This track shows the genomic regions of subtrees of an Ancestral Recombination Graph (ARG) inferred by Kelleher et al. from phased variant calls produced by the International Genome Sample Resource (IGSR) from sequence data generated by the 1000 Genomes Project in its Phase 3 sequencing of 2,504 genomes from 16 populations worldwide 1000 Genomes/IGSR variant calls. Clicking on a region opens Lorax, an interactive multi-tree viewer developed by Pratik Katte at UCSC.
In the track image, currently each tree region is represented by an empty box. TODO: add some data to the bigBed so we can display something a little more interesting.
Click on a subtree region to open the Lorax multi-tree viewer on the selected subtree. TODO: briefly describe Lorax interactive usage, link to user documentation.
TODO: link to tskit-produced data files?
TODO: Kelleher et al.
Fairley S, Lowy-Gallego E, Perry E, Flicek P. The International Genome Sample Resource (IGSR) collection of open human genomic variation resources. Nucleic Acids Res. 2019 Oct 4. PMID: 31584097
TODO: Lorax preprint?