The GENCODE Genes track (version 39lift37, Oct 2021) shows high-quality manual annotations merged with evidence-based automated annotations across the entire human genome generated by the GENCODE project. The GENCODE gene set presents a full merge between HAVANA manual annotation process and Ensembl automatic annotation pipeline. Priority is given to the manually curated HAVANA annotation using predicted Ensembl annotations when there are no corresponding manual annotations. The GENCODE V39 annotations on the GRCh38 (hg38) primary assembly were mapped to GRCh37 (hg19) using the process documented here.
The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the corresponding release.
GENCODE GFF3 and GTF files are available from the GENCODE release 39lift37 site.
GENCODE version 39lift37 corresponds to Ensembl 105.
See also: The GENCODE Project