Description

The GENCODE Genes track (version M34, Jan 2024) shows high-quality manual annotations merged with evidence-based automated annotations across the entire mouse genome generated by the GENCODE project. The GENCODE gene set presents a full merge between HAVANA manual annotation process and Ensembl automatic annotation pipeline. Priority is given to the manually curated HAVANA annotation using predicted Ensembl annotations when there are no corresponding manual annotations. The M34 annotation was carried out on genome assembly GRCm39 (mm39).

The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the corresponding release.

Downloads

GENCODE GFF3 and GTF files are available from the GENCODE release M34 site.

Release Notes

GENCODE version M34 corresponds to Ensembl 111.

See also: The GENCODE Project