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| hub gateway | description |
|---|---|
| primates | NCBI primate genomes (221 assemblies) |
| mammals | NCBI mammal genomes (612 assemblies) |
| birds | NCBI bird genomes (399 assemblies) |
| fishes | NCBI fish genomes (426 assemblies) |
| vertebrate | NCBI other vertebrate genomes (280 assemblies) |
| invertebrate | NCBI invertebrate genomes (1114 assemblies) |
| fungi | NCBI fungi genomes (918 assemblies) |
| plants | NCBI plant genomes (306 assemblies) |
| viral | NCBI virus genomes (290 assemblies) |
| bacteria | NCBI bacteria genomes (111 assemblies) |
| collections below are subsets of the assemblies above | |
| VGP | Vertebrate Genomes Project collection (1067 assemblies) |
| CCGP | The California Conservation Genomics Project (126 assemblies) |
| HPRC | Human Pangenome Reference Consortium (96 assemblies) |
| BRC | BRC Analytics - Bioinformatics Research Center (778 assemblies) |
| globalReference | Global Human Reference genomes, January 2020 (10 assemblies) |
| mouseStrains | 16 mouse strain assembly and track hub, May 2017 |
| legacy | NCBI genomes legacy/superseded by newer versions (528 assemblies) |
Please note: text file listing of 5207 genome assembly hubs
Please note, the invertebrate category contains more than just invertebrate animals. Until these clades are sorted out, with extra categories created, you will also find parasites, protozoa, and other single celled eukaryotes in the invertebrate grouping.
Please use the Assembly Search page to find and request GenBank assemblies that have not yet been included in the collections here.
To reference these resources in publications, please credit:
Clawson, H., Lee, B.T., Raney, B.J. et al.
GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023).
https://doi.org/10.1186/s13059-023-03057-x