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| hub gateway | description |
|---|---|
| primates | NCBI primate genomes (221 assemblies) |
| mammals | NCBI mammal genomes (608 assemblies) |
| birds | NCBI bird genomes (399 assemblies) |
| fishes | NCBI fish genomes (425 assemblies) |
| vertebrate | NCBI other vertebrate genomes (279 assemblies) |
| invertebrate | NCBI invertebrate genomes (1111 assemblies) |
| fungi | NCBI fungi genomes (912 assemblies) |
| plants | NCBI plant genomes (305 assemblies) |
| viral | NCBI virus genomes (287 assemblies) |
| bacteria | NCBI bacteria genomes (107 assemblies) |
| collections below are subsets of the assemblies above | |
| VGP | Vertebrate Genomes Project collection (389 assemblies) |
| CCGP | The California Conservation Genomics Project (126 assemblies) |
| HPRC | Human Pangenome Reference Consortium (96 assemblies) |
| BRC | BRC Analytics - Bioinformatics Research Center (775 assemblies) |
| globalReference | Global Human Reference genomes, January 2020 (10 assemblies) |
| mouseStrains | 16 mouse strain assembly and track hub, May 2017 |
| legacy | NCBI genomes legacy/superseded by newer versions (527 assemblies) |
Please note: text file listing of 5183 genome assembly hubs
Please note, the invertebrate category contains more than just invertebrate animals. Until these clades are sorted out, with extra categories created, you will also find parasites, protozoa, and other single celled eukaryotes in the invertebrate grouping.
Please use the Assembly Request page to find and request GenBank assemblies that have not yet been included in the collections here.
To reference these resources in publications, please credit:
Clawson, H., Lee, B.T., Raney, B.J. et al.
GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023).
https://doi.org/10.1186/s13059-023-03057-x