[DIR] Parent Directory

This directory contains data generated by the Bernstein/Broad lab as part of the ENCODE project.

This directory contains the subset of the Broad ChIP-seq signal tracks used in the ENCODE Integrated Regulation Tracks

Further information is available in the ENCODE Histone Modifications by Broad Institute ChIP-seq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2009-10-04wgEncodeBroadHistoneGm12878H3k4me3StdSig.bigWig  435M  2009-01-04  dataType=ChipSeq; cell=GM12878; antibody=H3K4me3; control=std; expId=28; setType=exp; controlId=GM12878/Input/std; subId=2806; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000028; origAssembly=hg18
      2010-06-28wgEncodeBroadHistoneH1hescH3k4me3StdSig.bigWig  320M  2009-09-29  dataType=ChipSeq; cell=H1-hESC; antibody=H3K4me3; control=std; expId=86; setType=exp; controlId=H1-hESC/Input/std; subId=2815; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000086; origAssembly=hg18
      2010-09-16wgEncodeBroadHistoneHsmmH3k4me3StdSig.bigWig  258M  2009-12-16  dataType=ChipSeq; cell=HSMM; antibody=H3K4me3; control=std; expId=116; setType=exp; controlId=HSMM/Input/std; subId=2846; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000116; origAssembly=hg18
      2009-10-05wgEncodeBroadHistoneHuvecH3k4me3StdSig.bigWig  343M  2009-01-05  dataType=ChipSeq; cell=HUVEC; antibody=H3K4me3; control=std; expId=41; setType=exp; controlId=HUVEC/Input/std; subId=2878; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000041; origAssembly=hg18
      2009-10-05wgEncodeBroadHistoneK562H3k4me3StdSig.bigWig  354M  2009-01-05  dataType=ChipSeq; cell=K562; antibody=H3K4me3; control=std; expId=48; setType=exp; controlId=K562/Input/std; subId=2890; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000048; origAssembly=hg18
      2009-10-07wgEncodeBroadHistoneNhekH3k4me3StdSig.bigWig  332M  2009-01-07  dataType=ChipSeq; cell=NHEK; antibody=H3K4me3; control=std; expId=68; setType=exp; controlId=NHEK/Input/std; subId=2909; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000068; origAssembly=hg18
      2010-06-28wgEncodeBroadHistoneNhlfH3k4me3StdSig.bigWig  427M  2009-09-29  dataType=ChipSeq; cell=NHLF; antibody=H3K4me3; control=std; expId=102; setType=exp; controlId=NHLF/Input/std; subId=2921; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000102; origAssembly=hg18
    7 files