==============================================================================
This file is from:
http://hgdownloads.cse.ucsc.edu/goldenPath/hg19/hg19Patch13/README.txt
GRCh37.p13 data is from:
ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_genbank/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh37.p13/
Files in this directory:
hg19Patch13.fa.gz - GRCh37.p13 fasta sequences
hg19Patch13.2bit - GRCh37.p13 sequences in 2bit format
hg19Patch13.agp - GRCh37.p13 AGP structure definitions
md5sum.txt - MD5 sums to verify downloads of these files
Patch release 13 is the thirteenth patch release for the GRCh37 assembly.
Patch release 13 includes all contents that were in preceding patches.
This is a minor release of GRCh37 that does not disrupt the coordinate
system in the reference sequence GRCh37.
==============================================================================
Definitions:
Genome Patch: a sequence contig/scaffold that corrects sequence
in a major release of the genome, or adds sequence to it.
FIX patch: A patch that corrects sequence or reduces an assembly gap
in a given major release. FIX patch sequences are meant to be
incorporated into the primary or existing alt-loci assembly units at
the next major release, and their accessions will then be
deprecated.
NOVEL patch: A patch that adds sequence to a major release. Typically,
NOVEL patch sequences are meant to be incorporated into the assembly
as new alternate loci at the next major release, and their
accessions will not be deprecated. UCSC term: "New haplotype sequence"
Total patch scaffolds in this patch release: 204
131 patch scaffolds of type FIX
73 patch scaffolds of type NOVEL
==============================================================================
GRCh37 reference NCBI Entrez GRC region sequence patch
location nucleotide record name name type
chr1:31872759-32017063 chr1_gl949741_fix REGION60 HG989_PATCH fix-patch
chr1:143871003-150440213 chr1_jh636052_fix 1Q21 HG1287_PATCH fix-patch
chr1:120471050-121346350 chr1_jh636053_fix 1P11 HG1292_PATCH fix-patch
chr1:3823584-3845268 chr1_jh806574_fix REGION77 HG1472_PATCH fix-patch
chr1:153673007-153838214 chr1_gl383518_alt REGION2 HSCHR1_1_CTG31 novel-patch
chr1:155180173-155275036 chr1_gl383519_alt MTX1 HSCHR1_2_CTG31 novel-patch
chr1:198339213-198694304 chr1_gl383520_alt REGION3 HSCHR1_3_CTG31 novel-patch
chr1:248865779-249098883 chr1_gl383516_fix REGION1 HG999_1_PATCH fix-patch
chr1:248865779-249098883 chr1_gl383517_fix REGION1 HG999_2_PATCH fix-patch
chr1:206072708-206940869 chr1_jh636054_fix 1Q32 HG1293_PATCH fix-patch
chr1:205916833-205922707 chr1_jh806573_fix REGION78 HG1471_PATCH fix-patch
chr1:235167042-235192211 chr1_jh806575_fix REGION79 HG1473_PATCH fix-patch
chr2:36453102-36590458 chr2_gl383521_alt REGION4 HSCHR2_1_CTG1 novel-patch
chr2:95326172-95618108 chr2_gl877871_fix REGION55 HG686_PATCH fix-patch
chr2:70660851-71260429 chr2_kb663603_fix CD207 HG953_PATCH fix-patch
chr2:169686873-169793704 chr2_gl383522_alt SPC25 HSCHR2_1_CTG12 novel-patch
chr2:149790583-149880633 chr2_gl582966_alt REGION44 HSCHR2_2_CTG12 novel-patch
chr2:243059660-243189373 chr2_gl877870_fix REGION54 HG1007_PATCH fix-patch
chr3:11856742-12027971 chr3_jh636055_alt REGION73 HSCHR3_1_CTG1 novel-patch
chr3:51416109-51584055 chr3_gl383523_fix VPRBP HG186_PATCH fix-patch
chr3:57369478-57399969 chr3_gl383524_fix DNAH12 HG280_PATCH fix-patch
chr3:66270271-66308065 chr3_gl383525_fix SLC25A26 HG991_PATCH fix-patch
chr3:60558332-60952039 chr3_jh159131_fix REGION64 HG1091_PATCH fix-patch
chr3:50267585-50368277 chr3_jh159132_fix SEMA3B HG325_PATCH fix-patch
chr3:53185062-53448933 chr3_ke332495_fix DCP1A HG957_PATCH fix-patch
chr3:151307154-151477286 chr3_gl383526_alt REGION5 HSCHR3_1_CTG2_1 novel-patch
chr4:10001-507004 chr4_ke332496_fix ZNF595_ZNF718 HG174_HG254_PATCH fix-patch
chr4:34519577-34885480 chr4_gl383528_alt REGION6 HSCHR4_1_CTG6 novel-patch
chr4:62777687-62877254 chr4_gl383529_alt LPHN3 HSCHR4_2_CTG9 novel-patch
chr4:75382210-75689879 chr4_gl582967_fix REGION45 HG706_PATCH fix-patch
chr4:156756530-156908416 chr4_gl383527_alt REGION7 HSCHR4_1_CTG12 novel-patch
chr4:190828226-191044276 chr4_gl877872_fix REGION56 HG1032_PATCH fix-patch
chr5:68512646-70910270 chr5_gl339449_alt SMA HSCHR5_1_CTG1 novel-patch
chr5:94505561-94590195 chr5_gl383530_alt MCTP1 HSCHR5_1_CTG2 novel-patch
chr5:12681538-12744122 chr5_gl383532_alt REGION9 HSCHR5_2_CTG1 novel-patch
chr5:29036605-29254576 chr5_gl949742_alt REGION61 HSCHR5_3_CTG1 novel-patch
chr5:102420838-102687150 chr5_jh159133_fix PPIP5K2 HG1063_PATCH fix-patch
chr5:140144410-140687716 chr5_ke332497_fix PCDHB HG1082_HG167_PATCH fix-patch
chr5:161800673-161968654 chr5_gl383531_alt REGION8 HSCHR5_1_CTG5 novel-patch
chr6:28477797-33448354 chr6_jh636057_fix MHC HG1322_PATCH fix-patch
chr6:26585843-26826779 chr6_jh806576_fix REGION80 HG27_PATCH fix-patch
chr6:80059725-80156628 chr6_gl383533_alt REGION10 HSCHR6_1_CTG5 novel-patch
chr6:112323682-112586593 chr6_jh636056_fix LAMA4 HG1304_PATCH fix-patch
chr6:107143253-107495574 chr6_kb663604_fix CD24 HG357_PATCH fix-patch
chr6:157539699-157789039 chr6_ke332498_fix TMEM242 HG193_PATCH fix-patch
chr6:169194170-169351741 chr6_kb021644_alt REGION99 HSCHR6_2_CTG5 novel-patch
chr7:101718951-102072447 chr7_gl582968_fix SH2B2 HG115_PATCH fix-patch
chr7:57342227-57586048 chr7_gl582969_fix REGION46 HG14_PATCH fix-patch
chr7:56835596-57190579 chr7_gl582970_fix REGION48 HG736_PATCH fix-patch
chr7:98260131-98556215 chr7_gl582972_fix REGION47 HG946_PATCH fix-patch
chr7:71935722-75921852 chr7_jh159134_fix WILLIAMS HG1257_PATCH fix-patch
chr7:129984424-130721755 chr7_jh636058_fix COPG2 HG1308_PATCH fix-patch
chr7:65012083-65286677 chr7_ke332499_fix INTS4L2 HG444_PATCH fix-patch
chr7:141333209-141446383 chr7_gl383534_alt REGION11 HSCHR7_1_CTG6 novel-patch
chr7:141557850-142778624 chr7_gl582971_fix TRB HG7_PATCH fix-patch
chr8:144743526-145146062 chr8_gl383535_fix EPPK1_SPATC1 HG104_HG975_PATCH fix-patch
chr8:145285645-145659901 chr8_gl383536_fix SCXB HG243_PATCH fix-patch
chr8:1965390-2498608 chr8_gl949743_fix REGION62 HG19_PATCH fix-patch
chr8:143711229-143813536 chr8_jh159135_fix JRK HG418_PATCH fix-patch
chr8:48176435-48405006 chr8_ke332500_fix REGION102 HG1699_PATCH fix-patch
chr9:7428994-7577169 chr9_gl383539_alt REGION14 HSCHR9_1_CTG1 novel-patch
chr9:70835469-71130847 chr9_jh636059_fix CBWD3 HG962_PATCH fix-patch
chr9:72028659-72092013 chr9_gl383540_alt REGION13 HSCHR9_1_CTG35 novel-patch
chr9:72639029-72804234 chr9_gl383541_alt MAMDC2 HSCHR9_2_CTG35 novel-patch
chr9:90793962-90842895 chr9_gl383542_alt REGION15 HSCHR9_3_CTG35 novel-patch
chr9:136049442-136369192 chr9_gl339450_fix ABO HG79_PATCH fix-patch
chr9:139136890-139252828 chr9_gl383537_fix REGION12 HG998_1_PATCH fix-patch
chr9:139136890-139252828 chr9_gl383538_fix REGION12 HG998_2_PATCH fix-patch
chr9:137025633-137247659 chr9_jh806577_fix REGION82 HG1500_PATCH fix-patch
chr9:137025633-137247659 chr9_jh806578_fix REGION82 HG1501_PATCH fix-patch
chr9:132892850-133073060 chr9_jh806579_fix REGION81 HG1502_PATCH fix-patch
chr9:92286339-92528796 chr9_kb663605_fix REGION100 HG50_PATCH fix-patch
chr10:17613209-18252930 chr10_gl383543_fix FAM23A_MRC1 HG544_PATCH fix-patch
chr10:60001-224405 chr10_gl877873_fix REGION57 HG905_PATCH fix-patch
chr10:5012527-5450243 chr10_jh636060_fix AKR1CL1 HG871_PATCH fix-patch
chr10:27574584-27706537 chr10_gl383545_alt REGION16 HSCHR10_1_CTG2 novel-patch
chr10:45670681-45964419 chr10_gl383546_alt REGION18 HSCHR10_1_CTG5 novel-patch
chr10:133258319-133381404 chr10_gl383544_fix REGION17 HG995_PATCH fix-patch
chr10:46224334-51886485 chr10_jh591181_fix 10Q11 HG1211_PATCH fix-patch
chr10:118348517-118544777 chr10_jh591182_fix PNLIPRP2 HG311_PATCH fix-patch
chr10:97861451-98039369 chr10_jh591183_fix ZNF518A HG339_PATCH fix-patch
chr10:133727528-133781577 chr10_jh806580_fix PPP2R2D HG1479_PATCH fix-patch
chr10:46224334-51886485 chr10_kb663606_fix 10Q11 HG1074_PATCH fix-patch
chr10:116786296-117806873 chr10_ke332501_fix ATRNL1 HG979_PATCH fix-patch
chr11:13963464-14425744 chr11_jh591184_fix SPON1 HG256_PATCH fix-patch
chr11:14873971-15041407 chr11_jh591185_fix CALCA HG873_PATCH fix-patch
chr11:25191953-25340626 chr11_gl383547_alt REGION19 HSCHR11_1_CTG1_1 novel-patch
chr11:49862648-50121284 chr11_gl582973_fix REGION49 HG281_PATCH fix-patch
chr11:55956728-56641043 chr11_jh159136_alt OLFACTORY_REGION_1 HG142_HG150_NOVEL_TEST novel-patch
chr11:55956728-56641043 chr11_jh159137_alt OLFACTORY_REGION_1 HG151_NOVEL_TEST novel-patch
chr11:69614786-69922571 chr11_gl949744_fix REGION63 HG536_PATCH fix-patch
chr11:118849111-118957986 chr11_jh159138_fix SLC37A4 HG299_PATCH fix-patch
chr11:102702497-102822936 chr11_jh159139_fix MMP12 HG305_PATCH fix-patch
chr11:112687997-113234431 chr11_jh159140_fix NCAM1 HG306_PATCH fix-patch
chr11:94611846-94852618 chr11_jh159141_fix CWC15_SRSF8 HG348_PATCH fix-patch
chr11:111618733-111945380 chr11_jh159142_fix DIXDC1_ALG9 HG388_HG400_PATCH fix-patch
chr11:76709408-76900812 chr11_jh159143_fix B3GNT6 HG414_PATCH fix-patch
chr11:118245278-118653701 chr11_jh720443_fix TREH HG122_PATCH fix-patch
chr11:70301893-71088948 chr11_jh806581_fix SHANK2 HG865_PATCH fix-patch
chr12:60001-282464 chr12_gl582974_fix REGION50 HG858_PATCH fix-patch
chr12:60001-282464 chr12_gl877875_alt REGION50 HSCHR12_1_CTG1 novel-patch
chr12:6907581-7178849 chr12_jh720444_fix EMG1 HG344_PATCH fix-patch
chr12:28148967-28263711 chr12_gl383549_alt REGION21 HSCHR12_1_CTG2 novel-patch
chr12:58326520-58486538 chr12_gl383550_alt REGION22 HSCHR12_1_CTG2_1 novel-patch
chr12:59323046-59454651 chr12_gl383552_alt REGION23 HSCHR12_2_CTG2_1 novel-patch
chr12:101505377-101652073 chr12_gl383553_alt REGION24 HSCHR12_3_CTG2_1 novel-patch
chr12:10953894-11330216 chr12_gl877876_alt REGION58 HSCHR12_2_CTG2 novel-patch
chr12:10953894-11330216 chr12_gl949745_alt REGION58 HG1133_PATCH novel-patch
chr12:121761801-122096824 chr12_kb663607_fix KDM2B HG1595_PATCH fix-patch
chr12:126711744-126890020 chr12_gl383551_alt REGION20 HSCHR12_1_CTG5 novel-patch
chr12:132806993-132967794 chr12_gl383548_fix GALNT9 HG996_PATCH fix-patch
chr13:115085142-115109878 chr13_gl582975_fix REGION51 HG531_PATCH fix-patch
chr14:105803171-107268434 chr14_kb021645_fix IGH HG1592_PATCH fix-patch
chr15:28557187-28842093 chr15_gl383554_alt REGION25 HSCHR15_1_CTG4 novel-patch
chr15:66200521-66577156 chr15_gl383555_alt MEGF11 HSCHR15_1_CTG8 novel-patch
chr15:99529037-99696045 chr15_jh720445_fix SYNM HG971_PATCH fix-patch
chr16:55822434-56002460 chr16_gl383556_alt REGION26 HSCHR16_1_CTG3_1 novel-patch
chr16:57774022-57871358 chr16_jh720446_fix REGION74 HG1208_PATCH fix-patch
chr16:69174054-69258593 chr16_gl383557_alt SNTB2 HSCHR16_2_CTG3_1 novel-patch
chr17:1-252428 chr17_jh806582_fix DOC2B_RPH3AL HG417_PATCH fix-patch
chr17:1-252428 chr17_gl383563_alt DOC2B_RPH3AL HSCHR17_1_CTG1 novel-patch
chr17:36372617-36711255 chr17_gl383559_fix SOCS7 HG745_PATCH fix-patch
chr17:34442621-35005379 chr17_gl383560_fix MYO19 HG75_PATCH fix-patch
chr17:21250948-21566608 chr17_gl383561_fix REGION27 HG987_PATCH fix-patch
chr17:252429-296626 chr17_gl383562_fix FAM101B HG990_PATCH fix-patch
chr17:26645159-26840019 chr17_jh159145_fix SLC46A1 HG883_PATCH fix-patch
chr17:34034852-34246252 chr17_kb021646_fix MMP28 HG385_PATCH fix-patch
chr17:22174115-22263006 chr17_ke332502_fix REGION103 HG1591_PATCH fix-patch
chr17:39006985-39589187 chr17_gl383564_alt KRTAP_REGION_1 HSCHR17_1_CTG4 novel-patch
chr17:39006985-39589187 chr17_jh159146_alt KRTAP_REGION_1 HSCHR17_4_CTG4 novel-patch
chr17:39006985-39589187 chr17_jh159147_alt KRTAP_REGION_1 HSCHR17_5_CTG4 novel-patch
chr17:39006985-39589187 chr17_jh159148_alt KRTAP_REGION_1 HSCHR17_6_CTG4 novel-patch
chr17:62273514-62649312 chr17_gl383558_fix PECAM1 HG183_PATCH fix-patch
chr17:39869611-40277911 chr17_gl582976_fix TTC25 HG185_PATCH fix-patch
chr17:65936106-66324470 chr17_jh159144_fix REGION65 HG747_PATCH fix-patch
chr17:43384864-44913631 chr17_jh720447_fix MAPT HG1146_PATCH fix-patch
chr17:68302419-68520360 chr17_gl383565_alt REGION28 HSCHR17_2_CTG4 novel-patch
chr17:75216812-75295408 chr17_gl383566_alt REGION30 HSCHR17_3_CTG4 novel-patch
chr17:77412077-77766016 chr17_jh591186_fix REGION69 HG748_PATCH fix-patch
chr17:79319163-79498447 chr17_jh636061_fix BAHCC1 HG271_PATCH fix-patch
chr18:47818564-48101162 chr18_gl383567_alt REGION31 HSCHR18_1_CTG1_1 novel-patch
chr18:70600357-70692016 chr18_gl383568_alt REGION34 HSCHR18_1_CTG2 novel-patch
chr18:76253467-76412030 chr18_gl383569_alt REGION35 HSCHR18_1_CTG2_1 novel-patch
chr18:49189306-49348012 chr18_gl383570_alt REGION32 HSCHR18_2_CTG1_1 novel-patch
chr18:65090960-65219788 chr18_gl383571_alt REGION33 HSCHR18_2_CTG2 novel-patch
chr18:76694886-76848997 chr18_gl383572_alt REGION36 HSCHR18_2_CTG2_1 novel-patch
chr19:20193557-20845946 chr19_gl582977_fix REGION52 HG730_PATCH fix-patch
chr19:8634915-8926179 chr19_jh159149_fix REGION66 HG729_PATCH fix-patch
chr19:20845947-21225187 chr19_gl383573_alt ZNF66 HSCHR19_1_CTG3 novel-patch
chr19:34643165-34791855 chr19_gl383574_alt REGION38 HSCHR19_1_CTG3_1 novel-patch
chr19:21831092-21991834 chr19_gl383575_alt REGION37 HSCHR19_2_CTG3 novel-patch
chr19:22303652-22483468 chr19_gl383576_alt REGION39 HSCHR19_3_CTG3 novel-patch
chr19:54528888-55595686 chr19_kb021647_fix LRC HG1079_PATCH fix-patch
chr19:41936867-42514711 chr19_ke332505_fix CEACAM_REGION_1 HG1350_HG959_PATCH fix-patch
chr19:54528888-55595686 chr19_gl949746_alt LRC HSCHR19LRC_COX1_CTG1 novel-patch
chr19:54528888-55595686 chr19_gl949747_alt LRC HSCHR19LRC_COX2_CTG1 novel-patch
chr19:54528888-55595686 chr19_gl949748_alt LRC HSCHR19LRC_LRC_I_CTG1 novel-patch
chr19:54528888-55595686 chr19_gl949749_alt LRC HSCHR19LRC_LRC_J_CTG1 novel-patch
chr19:54528888-55595686 chr19_gl949750_alt LRC HSCHR19LRC_LRC_S_CTG1 novel-patch
chr19:54528888-55595686 chr19_gl949751_alt LRC HSCHR19LRC_LRC_T_CTG1 novel-patch
chr19:54528888-55595686 chr19_gl949752_alt LRC HSCHR19LRC_PGF1_CTG1 novel-patch
chr19:54528888-55595686 chr19_gl949753_alt LRC HSCHR19LRC_PGF2_CTG1 novel-patch
chr20:17751747-17874115 chr20_gl383577_alt REGION40 HSCHR20_1_CTG1 novel-patch
chr20:61031539-61267733 chr20_gl582979_fix REGION53 HG506_HG507_HG1000_PATCH fix-patch
chr20:34883261-34994224 chr20_jh720448_fix DLGAP4 HG144_PATCH fix-patch
chr20:53978607-54220677 chr20_kb663608_fix REGION101 HG944_PATCH fix-patch
chr21:15796462-15847792 chr21_gl383578_alt REGION41 HSCHR21_1_CTG1_1 novel-patch
chr21:23474793-23669288 chr21_gl383579_alt REGION42 HSCHR21_2_CTG1_1 novel-patch
chr21:34141390-34210247 chr21_gl383580_alt REGION43 HSCHR21_3_CTG1_1 novel-patch
chr21:34777735-34884866 chr21_gl383581_alt TMEM50B HSCHR21_4_CTG1_1 novel-patch
chr21:45916561-46223846 chr21_ke332506_fix KRTAP_REGION_2 HG237_PATCH fix-patch
chr22:19134297-19346604 chr22_jh720449_fix CLTCL1 HG329_PATCH fix-patch
chr22:16656462-16697850 chr22_jh806583_fix REGION84 HG1486_PATCH fix-patch
chr22:16050001-16087693 chr22_jh806584_fix REGION83 HG1487_PATCH fix-patch
chr22:16847851-16884805 chr22_jh806585_fix REGION85 HG1488_PATCH fix-patch
chr22:42473660-42648568 chr22_gl383582_alt CYP2D6 HSCHR22_1_CTG1 novel-patch
chr22:39280299-39407165 chr22_gl383583_alt APOBEC HSCHR22_1_CTG2 novel-patch
chr22:42473660-42648568 chr22_kb663609_alt CYP2D6 HSCHR22_2_CTG1 novel-patch
chr22:51203354-51244566 chr22_jh806586_fix REGION86 HG497_PATCH fix-patch
chrX:803878-1227822 chrX_gl877877_fix REGION59 HG480_HG481_PATCH fix-patch
chrX:36202464-37669766 chrX_jh720451_fix REGION75 HG1423_PATCH fix-patch
chrX:36202464-37669766 chrX_jh720452_fix REGION75 HG1424_PATCH fix-patch
chrX:45534581-45805400 chrX_jh806589_fix REGION87 HG1435_PATCH fix-patch
chrX:46609875-47079810 chrX_kb021648_fix PHF16 HG29_PATCH fix-patch
chrX:47619971-54424077 chrX_jh806590_fix DGKK_REGION98 HG1436_HG1432_PATCH fix-patch
chrX:47619971-54424077 chrX_jh806587_fix DGKK_REGION98 HG1433_PATCH fix-patch
chrX:62203738-63086230 chrX_jh806591_fix REGION88 HG1437_PATCH fix-patch
chrX:71530834-72366730 chrX_jh806592_fix REGION89 HG1438_PATCH fix-patch
chrX:75200416-77450502 chrX_jh720453_fix REGION76 HG1425_PATCH fix-patch
chrX:75200416-77450502 chrX_jh720454_fix REGION76 HG1426_PATCH fix-patch
chrX:100573313-100962928 chrX_jh806593_fix REGION90 HG1439_PATCH fix-patch
chrX:101383115-101773566 chrX_jh806594_fix REGION91 HG1440_PATCH fix-patch
chrX:103118514-103552339 chrX_jh806595_fix REGION92 HG1441_PATCH fix-patch
chrX:104423968-104489003 chrX_jh720455_fix TEX13A HG375_PATCH fix-patch
chrX:112661943-115918761 chrX_jh806588_fix REGION93 HG1434_PATCH fix-patch
chrX:112661943-115918761 chrX_jh806601_fix REGION93 HG1462_PATCH fix-patch
chrX:112661943-115918761 chrX_jh806602_fix REGION93 HG1463_PATCH fix-patch
chrX:112661943-115918761 chrX_jh806603_fix REGION93 HG1490_PATCH fix-patch
chrX:119081534-119495352 chrX_jh806596_fix REGION94 HG1442_PATCH fix-patch
chrX:134202887-135196638 chrX_jh806597_fix REGION95 HG1443_HG1444_PATCH fix-patch
chrX:139986363-140891303 chrX_jh806598_fix REGION96 HG1453_PATCH fix-patch
chrX:142299066-150174083 chrX_jh806599_fix REGION97 HG1458_PATCH fix-patch
chrX:142299066-150174083 chrX_jh806600_fix REGION97 HG1459_PATCH fix-patch
chrX:151734490-154906585 chrX_jh159150_fix REGION67 HG1497_PATCH fix-patch
==============================================================================
Name Last modified Size Description
Parent Directory -
md5sum.txt 2018-06-07 15:15 198
hg19Patch13.agp 2018-05-25 15:12 68K
hg19Patch13.2bit 2018-05-25 15:09 23M
hg19Patch13.fa.gz 2018-05-25 14:27 27M