#README.txt ## Exon RPKMs with iIDR for two biological replicates, based on Gencode version 7 #iIDR was calculated for continious values (binSize = 0.1), code written by A.Durbin @CSHL #Exon RPKMs were calculated as the sum of all transcript RPKMs for transcripts that share the exon (transcript quantifion with FluxCapacitor, developed by M.Sammeth @CRG (version 03/01/2011) ## format: # chr # source # element_type # start # end # score = normalized RPKM per sample (used for quantitative display in the UCSC browser similar to .bed scores): # [((RPKM1 + RPKM2)/2) *1000]/maxRPKMsample(RPKM1 + RPKM2)/2) # strand # frame # gene_ids = list of all genes that contain the exon # transcript_ids = list of all transcripts that contain the exon # RPKM1 = RPKM bioreplicate 1 # RPKM2 = RPKM bioreplicate 2 (in case there is only one bioreplicate, there will be only one RPKM displayed) # iIDR (NA= the element was not expressed in either bioreplicate, or there is only one bioreplicates for this experiment) #contact: angelika.merkel@crg.eu