This directory contains reciprocal-best netted chains for dm3-droSim2.

 - dm3.droSim2.rbest.net.gz: dm3-referenced recip.best net to droSim2.
 - dm3.droSim2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from dm3 to droSim2 through the recip.best net.

 - droSim2.dm3.rbest.net.gz: droSim2-referenced recip.best net.
 - droSim2.dm3.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.dm3.droSim2.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                       Last modified      Size  Description
      Parent Directory                                -   
      axtRBestNet/               2016-11-02 10:23    -   
      md5sum.txt                 2016-11-02 10:11  240   
      droSim2.dm3.rbest.chain.gz 2016-11-02 10:11  2.5M  
      dm3.droSim2.rbest.chain.gz 2016-11-02 10:11  2.5M  
      droSim2.dm3.rbest.net.gz   2016-11-02 10:11  3.7M  
      dm3.droSim2.rbest.net.gz   2016-11-02 10:11  4.4M