This directory contains a dump of the UCSC genome annotation database for
the Apr. 2006 assembly of the D. melanogaster genome (dm3, BDGP Release 5).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by the Berkeley Drosophila Genome Project.
For more information on the D. melanogaster genome, see the release notes:
  http://www.fruitfly.org/sequence/release5genomic.shtml

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=dm3
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
To download a large file or multiple files from this directory, we recommend 
that you use ftp rather than downloading the files via our website. To do so: 
    ftp hgdownload.cse.ucsc.edu 
    user name: anonymous
    password: <your email address>
    go to the directory goldenPath/dm3/database

To download multiple files from the UNIX command line, use the "mget" command. 
    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 
Use the "prompt" command to toggle the interactive mode if you do not want 
to be prompted for each file that you download.

All the files and tables in this directory are freely usable for any purpose.

      Name                              Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-11-24 03:15 209 bigFiles.sql 2024-11-24 03:15 1.4K tableList.txt.gz 2024-11-24 03:15 22K tableList.sql 2024-11-24 03:15 1.6K tableDescriptions.txt.gz 2024-11-23 02:03 12K tableDescriptions.sql 2024-11-23 02:03 1.5K hgFindSpec.txt.gz 2023-03-28 13:48 1.4K hgFindSpec.sql 2023-03-28 13:48 1.8K trackDb.txt.gz 2023-03-28 13:48 55K trackDb.sql 2023-03-28 13:48 2.1K gbLoaded.txt.gz 2020-08-18 23:53 111K gbLoaded.sql 2020-08-18 23:53 1.6K xenoRefSeqAli.txt.gz 2020-08-18 23:53 2.7M xenoRefSeqAli.sql 2020-08-18 23:53 2.1K refSeqAli.txt.gz 2020-08-18 23:53 1.9M refSeqAli.sql 2020-08-18 23:53 2.1K mrnaOrientInfo.txt.gz 2020-08-18 23:53 1.8M mrnaOrientInfo.sql 2020-08-18 23:53 1.8K xenoRefFlat.txt.gz 2020-08-18 23:53 2.4M xenoRefFlat.sql 2020-08-18 23:53 1.7K xenoRefGene.txt.gz 2020-08-18 23:53 2.7M xenoRefGene.sql 2020-08-18 23:53 1.9K refFlat.txt.gz 2020-08-18 23:53 1.7M refFlat.sql 2020-08-18 23:53 1.7K refGene.txt.gz 2020-08-18 23:53 1.9M refGene.sql 2020-08-18 23:53 1.9K xenoMrna.txt.gz 2020-08-18 23:28 69M xenoMrna.sql 2020-08-18 23:28 2.1K all_mrna.txt.gz 2020-08-18 23:28 4.3M all_mrna.sql 2020-08-18 23:28 2.1K chr2R_mrna.txt.gz 2020-08-18 23:28 795K chr2R_mrna.sql 2020-08-18 23:28 2.1K chr2L_mrna.txt.gz 2020-08-18 23:28 676K chr2L_mrna.sql 2020-08-18 23:28 2.1K chrX_mrna.txt.gz 2020-05-06 07:51 619K chrX_mrna.sql 2020-05-06 07:51 2.1K chr3L_mrna.txt.gz 2020-03-01 05:53 749K chr3L_mrna.sql 2020-03-01 05:53 2.1K chr4_mrna.txt.gz 2020-03-01 05:53 44K chr4_mrna.sql 2020-03-01 05:53 2.1K chr3R_mrna.txt.gz 2020-03-01 05:53 927K chr3R_mrna.sql 2020-03-01 05:53 2.1K chrUextra_mrna.txt.gz 2018-04-29 06:31 308K chrUextra_mrna.sql 2018-04-29 06:31 2.1K chrU_mrna.txt.gz 2016-10-30 06:45 141K chrU_mrna.sql 2016-10-30 06:45 2.1K chr3RHet_mrna.txt.gz 2016-10-02 05:57 35K chr3RHet_mrna.sql 2016-10-02 05:57 2.1K chr2RHet_mrna.txt.gz 2016-10-02 05:57 41K chr2RHet_mrna.sql 2016-10-02 05:57 2.1K chr3LHet_mrna.txt.gz 2016-10-02 05:57 40K chr3LHet_mrna.sql 2016-10-02 05:57 2.1K chrXHet_mrna.txt.gz 2016-10-02 05:56 4.1K chrXHet_mrna.sql 2016-10-02 05:56 2.1K chr2LHet_mrna.txt.gz 2016-10-02 05:56 8.7K chr2LHet_mrna.sql 2016-10-02 05:56 2.1K chrYHet_mrna.txt.gz 2016-06-05 10:00 4.1K chrYHet_mrna.sql 2016-06-05 10:00 2.1K chrYHet_intronEst.txt.gz 2016-06-05 10:00 930 chrYHet_intronEst.sql 2016-06-05 10:00 2.1K chrYHet_est.txt.gz 2016-06-05 10:00 2.9K chrYHet_est.sql 2016-06-05 10:00 2.1K estOrientInfo.txt.gz 2016-06-05 10:00 9.4M estOrientInfo.sql 2016-06-05 10:00 1.8K chrX_intronEst.txt.gz 2016-06-05 10:00 1.5M chrX_intronEst.sql 2016-06-05 10:00 2.1K chrXHet_intronEst.txt.gz 2016-06-05 10:00 6.7K chrXHet_intronEst.sql 2016-06-05 10:00 2.1K chrXHet_est.txt.gz 2016-06-05 10:00 20K chrXHet_est.sql 2016-06-05 10:00 2.1K chrUextra_intronEst.txt.gz 2016-06-05 10:00 116K chrUextra_intronEst.sql 2016-06-05 10:00 2.1K chrUextra_est.txt.gz 2016-06-05 10:00 1.8M chrUextra_est.sql 2016-06-05 10:00 2.1K chrX_est.txt.gz 2016-06-05 10:00 4.0M chrX_est.sql 2016-06-05 10:00 2.1K chrU_intronEst.txt.gz 2016-06-05 10:00 19K chrU_intronEst.sql 2016-06-05 10:00 2.1K chrU_est.txt.gz 2016-06-05 10:00 718K chrU_est.sql 2016-06-05 10:00 2.1K chrM_mrna.txt.gz 2016-06-05 10:00 723 chrM_mrna.sql 2016-06-05 10:00 2.1K chrM_est.txt.gz 2016-06-05 10:00 369K chrM_est.sql 2016-06-05 10:00 2.1K chr4_intronEst.txt.gz 2016-06-05 10:00 182K chr4_intronEst.sql 2016-06-05 10:00 2.1K chr4_est.txt.gz 2016-06-05 10:00 382K chr4_est.sql 2016-06-05 10:00 2.1K chr3R_intronEst.txt.gz 2016-06-05 10:00 2.7M chr3R_intronEst.sql 2016-06-05 10:00 2.1K chr3R_est.txt.gz 2016-06-05 10:00 5.7M chr3R_est.sql 2016-06-05 10:00 2.1K chr3RHet_intronEst.txt.gz 2016-06-05 10:00 12K chr3RHet_intronEst.sql 2016-06-05 10:00 2.1K chr3RHet_est.txt.gz 2016-06-05 10:00 95K chr3RHet_est.sql 2016-06-05 10:00 2.1K chr3L_intronEst.txt.gz 2016-06-05 10:00 2.0M chr3L_intronEst.sql 2016-06-05 10:00 2.1K chr3L_est.txt.gz 2016-06-05 10:00 4.8M chr3L_est.sql 2016-06-05 10:00 2.1K chr3LHet_intronEst.txt.gz 2016-06-05 10:00 40K chr3LHet_intronEst.sql 2016-06-05 10:00 2.1K chr3LHet_est.txt.gz 2016-06-05 10:00 133K chr3LHet_est.sql 2016-06-05 10:00 2.1K chr2R_intronEst.txt.gz 2016-06-05 10:00 2.2M chr2R_intronEst.sql 2016-06-05 10:00 2.1K chr2R_est.txt.gz 2016-06-05 10:00 4.6M chr2R_est.sql 2016-06-05 10:00 2.1K chr2RHet_intronEst.txt.gz 2016-06-05 10:00 17K chr2RHet_intronEst.sql 2016-06-05 10:00 2.1K chr2RHet_est.txt.gz 2016-06-05 10:00 146K chr2RHet_est.sql 2016-06-05 10:00 2.1K chr2L_intronEst.txt.gz 2016-06-05 10:00 2.0M chr2L_intronEst.sql 2016-06-05 10:00 2.1K chr2L_est.txt.gz 2016-06-05 10:00 4.6M chr2L_est.sql 2016-06-05 10:00 2.1K chr2LHet_intronEst.txt.gz 2016-06-05 10:00 5.1K chr2LHet_intronEst.sql 2016-06-05 10:00 2.1K chr2LHet_est.txt.gz 2016-06-05 10:00 32K chr2LHet_est.sql 2016-06-05 10:00 2.1K all_est.txt.gz 2016-06-05 10:00 27M all_est.sql 2016-06-05 10:00 2.1K oregannoLink.txt.gz 2016-05-15 08:24 51K oregannoLink.sql 2016-05-15 08:24 1.4K oregannoAttr.txt.gz 2016-05-15 08:24 52K oregannoAttr.sql 2016-05-15 08:24 1.4K oreganno.txt.gz 2016-05-15 08:24 46K oreganno.sql 2016-05-15 08:24 1.5K microsat.txt.gz 2015-08-23 14:05 3.6K microsat.sql 2015-08-23 14:05 1.5K augustusGene.txt.gz 2015-07-26 12:07 759K augustusGene.sql 2015-07-26 12:07 1.9K hgBlastTab.txt.gz 2015-07-05 23:28 151K hgBlastTab.sql 2015-07-05 23:28 1.7K mmBlastTab.txt.gz 2015-05-31 21:01 148K mmBlastTab.sql 2015-05-31 21:01 1.7K ensemblToGeneName.txt.gz 2014-04-06 16:12 153K ensemblToGeneName.sql 2014-04-06 16:12 1.4K ensemblSource.txt.gz 2014-04-06 16:12 93K ensemblSource.sql 2014-04-06 16:12 1.3K ensPep.txt.gz 2014-04-06 16:12 6.5M ensPep.sql 2014-04-06 16:12 1.3K ensGtp.txt.gz 2014-04-06 16:12 217K ensGtp.sql 2014-04-06 16:12 1.4K ensGene.txt.gz 2014-04-06 16:12 1.1M ensGene.sql 2014-04-06 16:12 1.9K grp.txt.gz 2014-03-02 03:40 209 grp.sql 2014-03-02 03:40 1.4K pubsBingBlatPsl.txt.gz 2014-01-26 10:49 1.2M pubsBingBlatPsl.sql 2014-01-26 10:49 2.2K pubsBingBlat.txt.gz 2014-01-26 10:49 1.5M pubsBingBlat.sql 2014-01-26 10:49 2.4K drBlastTab.txt.gz 2013-10-27 12:26 158K drBlastTab.sql 2013-10-27 12:26 1.7K blastHg18KG.txt.gz 2012-07-15 08:44 1.4M blastHg18KG.sql 2012-07-15 08:44 2.1K pubsBlat.txt.gz 2012-05-07 16:01 637K pubsBlat.sql 2012-05-07 16:01 1.9K pubsBlatPsl.txt.gz 2012-05-07 16:01 1.1M pubsBlatPsl.sql 2012-05-07 16:01 2.1K rnBlastTab.txt.gz 2012-02-26 05:26 99K rnBlastTab.sql 2012-02-26 05:26 1.6K chrM_intronEst.txt.gz 2011-04-17 22:48 39 chrM_intronEst.sql 2011-04-17 22:48 2.0K bdtnpMed2S14Fdr25.txt.gz 2011-02-21 04:33 74 bdtnpMed2S14Fdr25.sql 2011-02-21 04:33 1.2K bdtnpMed2S14Fdr1.txt.gz 2011-02-21 04:33 72 bdtnpMed2S14Fdr1.sql 2011-02-21 04:33 1.2K bdtnpMed2S10Fdr25.txt.gz 2011-02-21 04:33 74 bdtnpMed2S10Fdr25.sql 2011-02-21 04:33 1.2K bdtnpMed2S10Fdr1.txt.gz 2011-02-21 04:33 72 bdtnpMed2S10Fdr1.sql 2011-02-21 04:33 1.2K bdtnpHb2S9Fdr1.txt.gz 2011-02-21 04:33 68 bdtnpHb2S9Fdr1.sql 2011-02-21 04:33 1.2K bdtnpHb1S9Fdr25.txt.gz 2011-02-21 04:33 70 bdtnpHb1S9Fdr25.sql 2011-02-21 04:33 1.2K bdtnpHb1S9Fdr1.txt.gz 2011-02-21 04:33 68 bdtnpHb1S9Fdr1.sql 2011-02-21 04:33 1.2K bdtnpDnaseS14R9478.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS14R9478.sql 2011-02-21 04:33 1.2K bdtnpDnaseS14R9477.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS14R9477.sql 2011-02-21 04:33 1.2K bdtnpDnaseS11R9486.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS11R9486.sql 2011-02-21 04:33 1.2K bdtnpDnaseS11R9485.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS11R9485.sql 2011-02-21 04:33 1.2K bdtnpDnaseS10R8820.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS10R8820.sql 2011-02-21 04:33 1.2K bdtnpDnaseS10R8816.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS10R8816.sql 2011-02-21 04:33 1.2K bdtnpDnaseS9R9128.txt.gz 2011-02-21 04:33 74 bdtnpDnaseS9R9128.sql 2011-02-21 04:33 1.2K bdtnpDnaseS9R9127.txt.gz 2011-02-21 04:33 74 bdtnpDnaseS9R9127.sql 2011-02-21 04:33 1.2K bdtnpDnaseS5R9482.txt.gz 2011-02-21 04:33 74 bdtnpDnaseS5R9482.sql 2011-02-21 04:33 1.2K bdtnpDnaseS5R9481.txt.gz 2011-02-21 04:33 74 bdtnpDnaseS5R9481.sql 2011-02-21 04:33 1.2K bdtnpDnaseAccS14.txt.gz 2011-02-21 04:33 179K bdtnpDnaseAccS14.sql 2011-02-21 04:33 1.4K bdtnpDnaseAccS11.txt.gz 2011-02-21 04:33 155K bdtnpDnaseAccS11.sql 2011-02-21 04:33 1.4K bdtnpDnaseAccS10.txt.gz 2011-02-21 04:33 185K bdtnpDnaseAccS10.sql 2011-02-21 04:33 1.4K bdtnpDnaseAccS9.txt.gz 2011-02-21 04:33 130K bdtnpDnaseAccS9.sql 2011-02-21 04:33 1.4K bdtnpHb2S9Fdr25.txt.gz 2011-02-21 04:33 70 bdtnpHb2S9Fdr25.sql 2011-02-21 04:33 1.2K bdtnpDnaseAccS5.txt.gz 2011-02-21 04:33 178K bdtnpDnaseAccS5.sql 2011-02-21 04:33 1.4K flyBaseBlastTab.txt.gz 2010-08-29 10:50 10M scBlastTab.txt.gz 2010-08-29 10:50 50K scBlastTab.sql 2010-08-29 10:50 1.6K flyBaseBlastTab.sql 2010-08-29 10:50 1.6K ceBlastTab.txt.gz 2010-08-29 10:50 116K ceBlastTab.sql 2010-08-29 10:50 1.6K affyDrosDevTransfrags11.txt.gz 2010-06-28 03:59 302K affyDrosDevTransfrags11.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags7.txt.gz 2010-06-28 03:59 318K affyDrosDevTransfrags7.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags9.txt.gz 2010-06-28 03:59 372K affyDrosDevTransfrags9.sql 2010-06-28 03:59 1.4K affyDrosDevSignal8.txt.gz 2010-06-28 03:59 3.1M affyDrosDevSignal8.sql 2010-06-28 03:59 1.7K affyDrosDevSignal1.txt.gz 2010-06-28 03:59 3.1M affyDrosDevSignal1.sql 2010-06-28 03:59 1.7K affyDrosDevSignal6.txt.gz 2010-06-28 03:59 3.1M affyDrosDevSignal6.sql 2010-06-28 03:59 1.7K affyDrosDevSignal11.txt.gz 2010-06-28 03:59 3.0M affyDrosDevTransfrags8.txt.gz 2010-06-28 03:59 344K affyDrosDevTransfrags8.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags6.txt.gz 2010-06-28 03:59 400K affyDrosDevSignal11.sql 2010-06-28 03:59 1.7K affyDrosDevTransfrags10.txt.gz 2010-06-28 03:59 288K affyDrosDevTransfrags10.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags6.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags1.txt.gz 2010-06-28 03:59 238K affyDrosDevTransfrags1.sql 2010-06-28 03:59 1.4K affyDrosDevSignal7.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal7.sql 2010-06-28 03:58 1.7K affyDrosDevSignal10.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal10.sql 2010-06-28 03:58 1.7K affyDrosDevSignal9.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal9.sql 2010-06-28 03:58 1.7K affyDrosDevSignal3.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal3.sql 2010-06-28 03:58 1.7K affyDrosDevSignal4.txt.gz 2010-06-28 03:58 3.1M affyDrosDevTransfrags5.txt.gz 2010-06-28 03:58 357K affyDrosDevTransfrags5.sql 2010-06-28 03:58 1.4K affyDrosDevTransfrags2.txt.gz 2010-06-28 03:58 264K affyDrosDevTransfrags2.sql 2010-06-28 03:58 1.4K affyDrosDevSignal4.sql 2010-06-28 03:58 1.7K affyDrosDevSignal5.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal5.sql 2010-06-28 03:58 1.7K affyDrosDevSignal12.txt.gz 2010-06-28 03:58 3.0M affyDrosDevSignal12.sql 2010-06-28 03:58 1.7K affyDrosDevSignal2.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal2.sql 2010-06-28 03:58 1.7K affyDrosDevTransfrags12.txt.gz 2010-06-28 03:58 326K affyDrosDevTransfrags12.sql 2010-06-28 03:58 1.4K affyDrosDevTransfrags4.txt.gz 2010-06-28 03:58 333K affyDrosDevTransfrags4.sql 2010-06-28 03:58 1.4K affyDrosDevTransfrags3.txt.gz 2010-06-28 03:58 234K affyDrosDevTransfrags3.sql 2010-06-28 03:58 1.4K bdtnpPrd1Fdr25.txt.gz 2009-07-26 06:50 493K bdtnpHkb2Fdr25.txt.gz 2009-07-26 06:50 283K bdtnpHkb2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpHb1Fdr25.txt.gz 2009-07-26 06:50 325K bdtnpHb1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpFtz3Fdr1.txt.gz 2009-07-26 06:50 24K bdtnpFtz3Fdr1.sql 2009-07-26 06:50 1.9K bdtnpCad1Fdr1.txt.gz 2009-07-26 06:50 119K bdtnpCad1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpBcd2Fdr25.txt.gz 2009-07-26 06:50 193K bdtnpBcd2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpSna1Fdr25.txt.gz 2009-07-26 06:50 265K bdtnpSna1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpSna1Fdr1.txt.gz 2009-07-26 06:50 36K bdtnpSna1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpShn3Fdr25.txt.gz 2009-07-26 06:50 21K bdtnpShn3Fdr25.sql 2009-07-26 06:50 1.9K bdtnpPrd1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpPolIIFdr25.txt.gz 2009-07-26 06:50 946K bdtnpPolIIFdr25.sql 2009-07-26 06:50 1.9K bdtnpKr2Fdr1.txt.gz 2009-07-26 06:50 327K bdtnpKr2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpKni1Fdr25.txt.gz 2009-07-26 06:50 19K bdtnpKni1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpFtz3Fdr25.txt.gz 2009-07-26 06:50 200K bdtnpKr1Fdr25.txt.gz 2009-07-26 06:50 789K bdtnpKr1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpHkb1Fdr1.txt.gz 2009-07-26 06:50 63K bdtnpHkb1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpH2Fdr1.txt.gz 2009-07-26 06:50 175K bdtnpH2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpFtz3Fdr25.sql 2009-07-26 06:50 1.9K bdtnpDl3Fdr1.txt.gz 2009-07-26 06:50 884K bdtnpDl3Fdr1.sql 2009-07-26 06:50 1.9K bdtnpTwi1Fdr25.txt.gz 2009-07-26 06:50 1.4M bdtnpTwi1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpRun1Fdr1.txt.gz 2009-07-26 06:50 56K bdtnpRun1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpGt2Fdr1.txt.gz 2009-07-26 06:50 77K bdtnpGt2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpShn2Fdr25.txt.gz 2009-07-26 06:50 84K bdtnpShn2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpRun1Fdr25.txt.gz 2009-07-26 06:50 538K 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