This directory contains a dump of the UCSC genome annotation database for the Sep. 2006 assembly of the S. purpuratus genome (strPur2, Baylor release 3 Spur 2.1). The annotations were generated by UCSC and collaborators worldwide. This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center. For more information on the S. purpuratus genome, see the project website: http://www.hgsc.bcm.tmc.edu/projects/seaurchin/ Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=strPur2 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. --------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/strPur2/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) For conditions of use regarding the S. purpuratus genome sequence data, see http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html . All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-09-02 07:33 10M xenoRefSeqAli.sql 2020-09-02 07:33 2.1K xenoRefGene.txt.gz 2020-09-02 07:33 11M xenoRefGene.sql 2020-09-02 07:33 2.0K xenoRefFlat.txt.gz 2020-09-02 07:33 9.5M xenoRefFlat.sql 2020-09-02 07:33 1.7K xenoMrna.txt.gz 2020-09-02 07:33 117M xenoMrna.sql 2020-09-02 07:33 2.1K trackDb.txt.gz 2023-03-28 13:53 27K trackDb.sql 2023-03-28 13:53 2.1K tableList.txt.gz 2024-10-13 03:16 2.7K tableList.sql 2024-10-13 03:16 1.6K tableDescriptions.txt.gz 2024-10-12 02:03 5.0K tableDescriptions.sql 2024-10-12 02:03 1.5K simpleRepeat.txt.gz 2007-10-10 14:53 10M simpleRepeat.sql 2007-10-10 14:53 2.0K rmsk.txt.gz 2007-10-10 14:53 20M rmsk.sql 2007-10-10 14:52 1.9K refSeqAli.txt.gz 2020-03-01 09:02 63K refSeqAli.sql 2020-03-01 09:02 2.1K refGene.txt.gz 2020-09-02 07:33 52K refGene.sql 2020-09-02 07:33 1.9K refFlat.txt.gz 2020-09-02 07:33 47K refFlat.sql 2020-09-02 07:33 1.7K quality.txt.gz 2007-10-10 14:52 20M quality.sql 2007-10-10 14:52 1.7K netHg18.txt.gz 2007-10-15 12:01 12M netHg18.sql 2007-10-15 12:01 2.2K netCi3.txt.gz 2017-06-13 19:56 1.3M netCi3.sql 2017-06-13 19:56 2.1K netCi2.txt.gz 2010-03-14 14:20 4.5M netCi2.sql 2010-03-14 14:20 2.3K mrnaOrientInfo.txt.gz 2020-03-01 09:02 463K mrnaOrientInfo.sql 2020-03-01 09:02 1.8K microsat.txt.gz 2015-08-24 01:57 144K microsat.sql 2015-08-24 01:57 1.5K intronEst.txt.gz 2016-05-15 11:33 2.7M intronEst.sql 2016-05-15 11:33 2.1K history.txt.gz 2007-10-10 14:52 558 history.sql 2007-10-10 14:52 1.4K hgFindSpec.txt.gz 2023-03-28 13:53 662 hgFindSpec.sql 2023-03-28 13:53 1.8K grp.txt.gz 2014-03-02 04:14 245 grp.sql 2014-03-02 04:14 1.4K gold.txt.gz 2007-10-10 14:51 2.8M gold.sql 2007-10-10 14:51 1.6K genscanSubopt.txt.gz 2007-10-10 14:51 3.1M genscanSubopt.sql 2007-10-10 14:51 1.5K genscanPep.txt.gz 2007-10-10 14:51 12M genscanPep.sql 2007-10-10 14:51 1.2K genscan.txt.gz 2007-10-10 14:51 2.6M genscan.sql 2007-10-10 14:51 1.6K gc5Base.txt.gz 2007-10-10 14:51 5.6M gc5Base.sql 2007-10-10 14:51 1.7K gbLoaded.txt.gz 2020-09-02 07:33 44K gbLoaded.sql 2020-09-02 07:33 1.6K gap.txt.gz 2007-10-10 14:50 889K gap.sql 2007-10-10 14:50 1.5K estOrientInfo.txt.gz 2016-05-15 11:33 2.3M estOrientInfo.sql 2016-05-15 11:33 1.8K cytoBandIdeo.txt.gz 2013-04-28 22:00 503K cytoBandIdeo.sql 2013-04-28 22:00 1.5K chromInfo.txt.gz 2007-10-10 14:50 584K chromInfo.sql 2007-10-10 14:50 1.2K chainHg18Link.txt.gz 2007-10-15 11:55 225M chainHg18Link.sql 2007-10-15 11:50 1.4K chainHg18.txt.gz 2007-10-15 11:49 69M chainHg18.sql 2007-10-15 11:47 1.7K chainCi3Link.txt.gz 2017-06-13 19:56 3.8M chainCi3Link.sql 2017-06-13 19:56 1.5K chainCi3.txt.gz 2017-06-13 19:56 1.5M chainCi3.sql 2017-06-13 19:56 1.7K chainCi2Link.txt.gz 2010-03-14 14:19 54M chainCi2Link.sql 2010-03-14 14:19 1.5K chainCi2.txt.gz 2010-03-14 14:19 11M chainCi2.sql 2010-03-14 14:19 1.8K blastHg18KG.txt.gz 2007-10-15 11:47 1.2M blastHg18KG.sql 2007-10-15 11:47 2.1K bigFiles.txt.gz 2024-10-13 03:16 33 bigFiles.sql 2024-10-13 03:16 1.4K all_mrna.txt.gz 2019-07-14 09:26 2.3M all_mrna.sql 2019-07-14 09:26 2.1K all_est.txt.gz 2016-05-15 11:33 9.8M all_est.sql 2016-05-15 11:33 2.1K