This directory contains a dump of the UCSC genome annotation database for
the Sep. 2006 assembly of the S. purpuratus genome (strPur2, Baylor release 3 Spur 2.1).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the S. purpuratus genome, see the project website:
http://www.hgsc.bcm.tmc.edu/projects/seaurchin/

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=strPur2
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/strPur2/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

For conditions of use regarding the S. purpuratus genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .

All the files and tables in this directory are freely usable for any purpose.

      Name                     Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2022-10-02 03:06 33 bigFiles.sql 2022-10-02 03:06 1.4K tableList.txt.gz 2022-10-02 03:06 2.7K tableList.sql 2022-10-02 03:06 1.6K hgFindSpec.txt.gz 2021-08-02 14:33 613 hgFindSpec.sql 2021-08-02 14:33 1.8K trackDb.txt.gz 2021-08-02 14:33 25K trackDb.sql 2021-08-02 14:33 2.1K gbLoaded.txt.gz 2020-09-02 07:33 44K xenoRefSeqAli.txt.gz 2020-09-02 07:33 10M xenoRefFlat.txt.gz 2020-09-02 07:33 9.5M xenoRefSeqAli.sql 2020-09-02 07:33 2.1K xenoRefFlat.sql 2020-09-02 07:33 1.7K gbLoaded.sql 2020-09-02 07:33 1.6K xenoRefGene.txt.gz 2020-09-02 07:33 11M xenoRefGene.sql 2020-09-02 07:33 1.9K refFlat.txt.gz 2020-09-02 07:33 47K refGene.txt.gz 2020-09-02 07:33 52K refGene.sql 2020-09-02 07:33 1.9K refFlat.sql 2020-09-02 07:33 1.7K xenoMrna.txt.gz 2020-09-02 07:33 117M xenoMrna.sql 2020-09-02 07:33 2.1K refSeqAli.txt.gz 2020-03-01 09:02 63K refSeqAli.sql 2020-03-01 09:02 2.1K mrnaOrientInfo.txt.gz 2020-03-01 09:02 463K mrnaOrientInfo.sql 2020-03-01 09:02 1.8K tableDescriptions.txt.gz 2019-07-21 03:43 4.9K tableDescriptions.sql 2019-07-21 03:43 1.4K all_mrna.txt.gz 2019-07-14 09:26 2.3M all_mrna.sql 2019-07-14 09:26 2.1K netCi3.txt.gz 2017-06-13 19:56 1.3M netCi3.sql 2017-06-13 19:56 2.1K chainCi3Link.txt.gz 2017-06-13 19:56 3.8M chainCi3Link.sql 2017-06-13 19:56 1.5K chainCi3.txt.gz 2017-06-13 19:56 1.5M chainCi3.sql 2017-06-13 19:56 1.7K intronEst.txt.gz 2016-05-15 11:33 2.7M intronEst.sql 2016-05-15 11:33 2.1K estOrientInfo.txt.gz 2016-05-15 11:33 2.3M estOrientInfo.sql 2016-05-15 11:33 1.8K all_est.txt.gz 2016-05-15 11:33 9.8M all_est.sql 2016-05-15 11:33 2.1K microsat.txt.gz 2015-08-24 01:57 144K microsat.sql 2015-08-24 01:57 1.5K grp.txt.gz 2014-03-02 04:14 245 grp.sql 2014-03-02 04:14 1.4K cytoBandIdeo.txt.gz 2013-04-28 22:00 503K cytoBandIdeo.sql 2013-04-28 22:00 1.5K netCi2.txt.gz 2010-03-14 14:20 4.5M netCi2.sql 2010-03-14 14:20 2.3K chainCi2.txt.gz 2010-03-14 14:19 11M chainCi2.sql 2010-03-14 14:19 1.8K chainCi2Link.txt.gz 2010-03-14 14:19 54M chainCi2Link.sql 2010-03-14 14:19 1.5K netHg18.txt.gz 2007-10-15 12:01 12M netHg18.sql 2007-10-15 12:01 2.2K chainHg18Link.txt.gz 2007-10-15 11:55 225M chainHg18Link.sql 2007-10-15 11:50 1.4K chainHg18.txt.gz 2007-10-15 11:49 69M chainHg18.sql 2007-10-15 11:47 1.7K blastHg18KG.txt.gz 2007-10-15 11:47 1.2M blastHg18KG.sql 2007-10-15 11:47 2.1K simpleRepeat.txt.gz 2007-10-10 14:53 10M simpleRepeat.sql 2007-10-10 14:53 2.0K rmsk.txt.gz 2007-10-10 14:53 20M rmsk.sql 2007-10-10 14:52 1.9K quality.txt.gz 2007-10-10 14:52 20M quality.sql 2007-10-10 14:52 1.7K history.txt.gz 2007-10-10 14:52 558 history.sql 2007-10-10 14:52 1.4K gold.txt.gz 2007-10-10 14:51 2.8M gold.sql 2007-10-10 14:51 1.6K genscanSubopt.txt.gz 2007-10-10 14:51 3.1M genscanSubopt.sql 2007-10-10 14:51 1.5K genscanPep.txt.gz 2007-10-10 14:51 12M genscanPep.sql 2007-10-10 14:51 1.2K genscan.txt.gz 2007-10-10 14:51 2.6M genscan.sql 2007-10-10 14:51 1.6K gc5Base.txt.gz 2007-10-10 14:51 5.6M gc5Base.sql 2007-10-10 14:51 1.7K gap.txt.gz 2007-10-10 14:50 889K gap.sql 2007-10-10 14:50 1.5K chromInfo.txt.gz 2007-10-10 14:50 584K chromInfo.sql 2007-10-10 14:50 1.2K