This directory contains a dump of the UCSC genome annotation database for
the Sep. 2006 assembly of the S. purpuratus genome (strPur2, Baylor release 3 Spur 2.1).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the S. purpuratus genome, see the project website:
http://www.hgsc.bcm.tmc.edu/projects/seaurchin/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=strPur2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/strPur2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
For conditions of use regarding the S. purpuratus genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-12-29 03:13 33
bigFiles.sql 2024-12-29 03:13 1.4K
tableList.txt.gz 2024-12-29 03:13 2.7K
tableList.sql 2024-12-29 03:13 1.6K
tableDescriptions.txt.gz 2024-12-28 02:12 5.0K
tableDescriptions.sql 2024-12-28 02:12 1.5K
hgFindSpec.txt.gz 2023-03-28 13:53 662
hgFindSpec.sql 2023-03-28 13:53 1.8K
trackDb.txt.gz 2023-03-28 13:53 27K
trackDb.sql 2023-03-28 13:53 2.1K
gbLoaded.txt.gz 2020-09-02 07:33 44K
gbLoaded.sql 2020-09-02 07:33 1.6K
xenoRefSeqAli.txt.gz 2020-09-02 07:33 10M
xenoRefSeqAli.sql 2020-09-02 07:33 2.1K
xenoRefFlat.txt.gz 2020-09-02 07:33 9.5M
xenoRefFlat.sql 2020-09-02 07:33 1.7K
xenoRefGene.txt.gz 2020-09-02 07:33 11M
xenoRefGene.sql 2020-09-02 07:33 2.0K
refFlat.txt.gz 2020-09-02 07:33 47K
refFlat.sql 2020-09-02 07:33 1.7K
refGene.txt.gz 2020-09-02 07:33 52K
refGene.sql 2020-09-02 07:33 1.9K
xenoMrna.txt.gz 2020-09-02 07:33 117M
xenoMrna.sql 2020-09-02 07:33 2.1K
refSeqAli.txt.gz 2020-03-01 09:02 63K
refSeqAli.sql 2020-03-01 09:02 2.1K
mrnaOrientInfo.txt.gz 2020-03-01 09:02 463K
mrnaOrientInfo.sql 2020-03-01 09:02 1.8K
all_mrna.txt.gz 2019-07-14 09:26 2.3M
all_mrna.sql 2019-07-14 09:26 2.1K
netCi3.txt.gz 2017-06-13 19:56 1.3M
netCi3.sql 2017-06-13 19:56 2.1K
chainCi3Link.txt.gz 2017-06-13 19:56 3.8M
chainCi3Link.sql 2017-06-13 19:56 1.5K
chainCi3.txt.gz 2017-06-13 19:56 1.5M
chainCi3.sql 2017-06-13 19:56 1.7K
intronEst.txt.gz 2016-05-15 11:33 2.7M
intronEst.sql 2016-05-15 11:33 2.1K
estOrientInfo.txt.gz 2016-05-15 11:33 2.3M
estOrientInfo.sql 2016-05-15 11:33 1.8K
all_est.txt.gz 2016-05-15 11:33 9.8M
all_est.sql 2016-05-15 11:33 2.1K
microsat.txt.gz 2015-08-24 01:57 144K
microsat.sql 2015-08-24 01:57 1.5K
grp.txt.gz 2014-03-02 04:14 245
grp.sql 2014-03-02 04:14 1.4K
cytoBandIdeo.txt.gz 2013-04-28 22:00 503K
cytoBandIdeo.sql 2013-04-28 22:00 1.5K
netCi2.txt.gz 2010-03-14 14:20 4.5M
netCi2.sql 2010-03-14 14:20 2.3K
chainCi2.txt.gz 2010-03-14 14:19 11M
chainCi2.sql 2010-03-14 14:19 1.8K
chainCi2Link.txt.gz 2010-03-14 14:19 54M
chainCi2Link.sql 2010-03-14 14:19 1.5K
netHg18.txt.gz 2007-10-15 12:01 12M
netHg18.sql 2007-10-15 12:01 2.2K
chainHg18Link.txt.gz 2007-10-15 11:55 225M
chainHg18Link.sql 2007-10-15 11:50 1.4K
chainHg18.txt.gz 2007-10-15 11:49 69M
chainHg18.sql 2007-10-15 11:47 1.7K
blastHg18KG.txt.gz 2007-10-15 11:47 1.2M
blastHg18KG.sql 2007-10-15 11:47 2.1K
simpleRepeat.txt.gz 2007-10-10 14:53 10M
simpleRepeat.sql 2007-10-10 14:53 2.0K
rmsk.txt.gz 2007-10-10 14:53 20M
rmsk.sql 2007-10-10 14:52 1.9K
quality.txt.gz 2007-10-10 14:52 20M
quality.sql 2007-10-10 14:52 1.7K
history.txt.gz 2007-10-10 14:52 558
history.sql 2007-10-10 14:52 1.4K
gold.txt.gz 2007-10-10 14:51 2.8M
gold.sql 2007-10-10 14:51 1.6K
genscanSubopt.txt.gz 2007-10-10 14:51 3.1M
genscanSubopt.sql 2007-10-10 14:51 1.5K
genscanPep.txt.gz 2007-10-10 14:51 12M
genscanPep.sql 2007-10-10 14:51 1.2K
genscan.txt.gz 2007-10-10 14:51 2.6M
genscan.sql 2007-10-10 14:51 1.6K
gc5Base.txt.gz 2007-10-10 14:51 5.6M
gc5Base.sql 2007-10-10 14:51 1.7K
gap.txt.gz 2007-10-10 14:50 889K
gap.sql 2007-10-10 14:50 1.5K
chromInfo.txt.gz 2007-10-10 14:50 584K
chromInfo.sql 2007-10-10 14:50 1.2K