This directory contains a dump of the UCSC genome annotation database
for the April 2005 Spur_0.5 freeze of the S. purpuratus genome (UCSC version
strPur1) obtained from the Baylor College of Medicine Human Genome
Sequencing Center.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=strPur1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/strPur1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
The Spur_0.5 data are made available before scientific publication with the
following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing particular
genes and regions if the providers of these data are properly acknowledged.
Please cite the BCM-HGSC web site or publications from BCM-HGSC referring to
the genome sequence.
3. BCM HGSC plans to publish the assembly and genomic annotation of the dataset,
including large-scale identification of regions of evolutionary conservation.
4. This is in accordance with, and with the understandings in the Fort
Lauderdale meeting discussing Community Resource Projects and the resulting
NHGRI policy statement.
5. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
chainHg18Link.txt.gz 2006-07-15 08:52 231M
chainHg18.txt.gz 2006-07-15 08:47 72M
repeatScout.txt.gz 2006-03-06 15:40 58M
repeatScout20.txt.gz 2006-03-06 15:42 48M
repeatScout30.txt.gz 2006-03-06 15:43 44M
repeatScout100.txt.gz 2006-03-06 15:41 38M
quality.txt.gz 2006-03-06 15:39 24M
xenoRefSeqAli.txt.gz 2020-09-02 07:33 22M
xenoRefGene.txt.gz 2020-09-02 07:33 20M
xenoRefFlat.txt.gz 2020-09-02 07:33 18M
rmsk.txt.gz 2006-03-06 15:43 16M
genscanPep.txt.gz 2006-03-06 15:38 13M
netHg18.txt.gz 2006-07-15 08:55 13M
simpleRepeat.txt.gz 2006-03-06 15:44 11M
gc5Base.txt.gz 2006-03-06 15:38 7.0M
gold.txt.gz 2006-03-06 15:38 4.4M
genscan.txt.gz 2006-03-06 15:38 2.9M
all_mrna.txt.gz 2019-07-14 09:24 2.8M
blastHg18KG.txt.gz 2007-02-28 07:30 1.4M
gap.txt.gz 2006-03-06 15:37 960K
chromInfo.txt.gz 2006-03-06 15:37 905K
mrnaOrientInfo.txt.gz 2020-03-01 09:02 596K
refSeqAli.txt.gz 2020-03-01 09:02 69K
refGene.txt.gz 2020-09-02 07:33 57K
refFlat.txt.gz 2020-09-02 07:33 51K
trackDb.txt.gz 2023-03-28 13:53 21K
gbLoaded.txt.gz 2020-09-02 07:33 15K
trackDb_pushedout.txt.gz 2021-08-02 14:33 14K
tableDescriptions.txt.gz 2024-04-20 02:04 4.7K
tableList.txt.gz 2024-04-21 03:28 2.4K
netHg18.sql 2006-07-15 08:55 2.2K
xenoRefSeqAli.sql 2020-09-02 07:33 2.1K
blastHg18KG.sql 2007-02-28 07:30 2.1K
refSeqAli.sql 2020-03-01 09:02 2.1K
all_mrna.sql 2019-07-14 09:24 2.1K
trackDb_pushedout.sql 2021-08-02 14:33 2.1K
trackDb.sql 2023-03-28 13:53 2.1K
xenoRefGene.sql 2020-09-02 07:33 2.0K
refGene.sql 2020-09-02 07:33 1.9K
hgFindSpec_pushedout.sql 2021-08-02 14:33 1.8K
mrnaOrientInfo.sql 2020-03-01 09:02 1.8K
hgFindSpec.sql 2023-03-28 13:53 1.8K
xenoRefFlat.sql 2020-09-02 07:33 1.7K
refFlat.sql 2020-09-02 07:33 1.7K
chainHg18.sql 2006-07-15 08:46 1.6K
gbLoaded.sql 2020-09-02 07:33 1.6K
tableList.sql 2024-04-21 03:28 1.6K
tableDescriptions.sql 2024-04-20 02:04 1.5K
bigFiles.sql 2024-04-21 03:28 1.4K
grp.sql 2014-03-02 04:14 1.4K
chainHg18Link.sql 2006-07-15 08:48 1.4K
repeatScout100.sql 2013-10-01 12:48 1.1K
repeatScout30.sql 2013-10-01 12:48 1.1K
simpleRepeat.sql 2013-10-01 12:48 1.1K
rmsk.sql 2013-10-01 12:48 1.1K
repeatScout20.sql 2013-10-01 12:48 1.0K
repeatScout.sql 2013-10-01 12:48 1.0K
quality.sql 2013-10-01 12:48 892
gc5Base.sql 2013-10-01 12:48 892
gold.sql 2013-10-01 12:48 799
genscan.sql 2013-10-01 12:48 748
gap.sql 2013-10-01 12:48 722
hgFindSpec.txt.gz 2023-03-28 13:53 662
hgFindSpec_pushedout.txt.gz 2021-08-02 14:33 623
history.sql 2013-10-01 12:48 537
chromInfo.sql 2013-10-01 12:48 396
genscanPep.sql 2013-10-01 12:48 330
history.txt.gz 2006-03-06 15:38 241
grp.txt.gz 2014-03-02 04:14 223
bigFiles.txt.gz 2024-04-21 03:28 33