This directory contains the assembled sequence for the
Nov. 2002 freeze of the rat genome in separate files
for each chromosome in a zipped Fasta format. This
assembly is from the Rat Genome Sequencing Consortium.
It was produced at the Baylor College of Medicine.
For more information on the rat genome, see the Rat
Genome Project website for the Baylor College of Medicine
Human Genome Sequencing Center at http://www.hgsc.bcm.tmc.edu/.
This data has specific conditions concerning its use. Refer
to http://genome.ucsc.edu/goldenPath/credits.html for
details.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgarchive.cse.ucsc.edu, then go to the directory
goldenPath/rnNov2002/chromosomes. To download multiple files, use
the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
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chromAgp.zip - Description of how the working draft was generated from
fragments at a chromosome layout level.
chromFa.zip - The working draft sequence chromosome in one file per
chromosome. Repeats (from RepeatMasker and Tandem Repeat Finder)
are in lower case while non-repeating sequence is in upper case.
chromFaMasked.zip - The working draft sequence chromosome in one file
per chromosome. Repeats and non-repeating sequence are in upper case.
Name Last modified Size Description
Parent Directory -
chr1.fa.gz 2002-11-27 15:43 80M
chr2.fa.gz 2002-11-27 15:46 72M
chr5.fa.gz 2002-11-27 15:54 56M
chr4.fa.gz 2002-11-27 15:51 55M
chr3.fa.gz 2002-11-27 15:49 48M
chr6.fa.gz 2002-11-27 15:56 43M
chr7.fa.gz 2002-11-27 15:58 40M
chr9.fa.gz 2002-11-27 16:01 38M
chr8.fa.gz 2002-11-27 16:00 38M
chrX.fa.gz 2002-11-27 16:03 34M
chr10.fa.gz 2002-11-27 16:05 31M
chr13.fa.gz 2002-11-27 16:08 30M
chr15.fa.gz 2002-11-27 16:11 30M
chr14.fa.gz 2002-11-27 16:10 29M
chr11.fa.gz 2002-11-27 16:06 27M
chr17.fa.gz 2002-11-27 16:14 27M
chr18.fa.gz 2002-11-27 16:15 25M
chr16.fa.gz 2002-11-27 16:12 24M
chr19.fa.gz 2002-11-27 16:15 16M
chr20.fa.gz 2002-11-27 16:16 16M
chr12.fa.gz 2002-11-27 16:07 13M
chrUn.fa.gz 2002-11-27 16:17 12M
chr1_random.fa.gz 2002-11-27 16:03 2.2M
chrUn_random.fa.gz 2002-11-27 16:17 1.6M
chr2_random.fa.gz 2002-11-27 16:03 1.6M
chr5_random.fa.gz 2002-11-27 16:03 1.3M
chr14_random.fa.gz 2002-11-27 16:17 1.1M
chr9_random.fa.gz 2002-11-27 16:04 1.1M
chr3_random.fa.gz 2002-11-27 16:03 1.0M
chr6_random.fa.gz 2002-11-27 16:03 1.0M
chr17_random.fa.gz 2002-11-27 16:17 1.0M
chrX_random.fa.gz 2002-11-27 16:04 868K
chr4_random.fa.gz 2002-11-27 16:03 823K
chr8_random.fa.gz 2002-11-27 16:04 814K
chr10_random.fa.gz 2002-11-27 16:17 809K
chr7_random.fa.gz 2002-11-27 16:03 793K
chr13_random.fa.gz 2002-11-27 16:17 720K
chr15_random.fa.gz 2002-11-27 16:17 666K
chr11_random.fa.gz 2002-11-27 16:17 638K
chr20_random.fa.gz 2002-11-27 16:17 522K
chr19_random.fa.gz 2002-11-27 16:17 456K
chr12_random.fa.gz 2002-11-27 16:17 437K
chr16_random.fa.gz 2002-11-27 16:17 422K
chr18_random.fa.gz 2002-11-27 16:17 394K