This directory contains reciprocal-best netted chains for rheMac10-hg38.
- rheMac10.hg38.rbest.net.gz: rheMac10-referenced recip.best net to hg38.
- rheMac10.hg38.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from rheMac10 to hg38 through the recip.best net.
- hg38.rheMac10.rbest.net.gz: hg38-referenced recip.best net.
- hg38.rheMac10.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/rheMac10.hg38.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
rheMac10.hg38.rbest.net.gz 2019-07-03 21:09 54M
rheMac10.hg38.rbest.chain.gz 2019-07-03 21:08 34M
md5sum.txt 2019-07-03 21:09 248
hg38.rheMac10.rbest.net.gz 2019-07-03 21:07 58M
hg38.rheMac10.rbest.chain.gz 2019-07-03 21:08 34M
axtRBestNet/ 2019-09-03 15:17 -