This directory contains a dump of the UCSC genome annotation database
for the Jan. 2005 rhesus genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (rheMac1, BCM HGSC Mmul_0.1). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/rmacaque/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables. See
http://genome.ucsc.edu/goldenPath/gbdDescriptions.html for
descriptions of the tables.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/rheMac1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the rhesus assembly data at
http://genome.ucsc.edu/goldenPath/credits.html#rhesus_use.
Name Last modified Size Description
Parent Directory -
chainHg17.txt.gz 2005-05-18 06:34 168M
chainHg17Link.txt.gz 2005-05-18 06:44 795M
chromInfo.txt.gz 2005-05-18 06:54 878K
ctgPos2.txt.gz 2005-05-18 06:54 32
gap.txt.gz 2005-05-18 06:54 2.9M
gc5Base.txt.gz 2005-05-18 06:56 14M
gold.txt.gz 2005-05-18 06:56 6.4M
grp.txt.gz 2005-05-18 06:56 204
hgFindSpec.txt.gz 2005-05-18 06:56 275
hgFindSpec_fanhsu.txt.gz 2005-05-18 06:56 2.3K
history.txt.gz 2005-05-18 06:56 132
netHg17.txt.gz 2005-05-18 06:57 36M
rmsk.txt.gz 2005-05-18 07:00 119M
scaffoldCoords.txt.gz 2005-05-18 07:01 4.4M
simpleRepeat.txt.gz 2005-05-18 07:01 15M
trackDb_fanhsu.txt.gz 2005-05-18 07:02 55K
quality.txt.gz 2005-06-16 04:59 62M
gbDelete_tmp.txt.gz 2005-09-16 05:05 180K
estOrientInfo.txt.gz 2005-11-30 11:18 814K
intronEst.txt.gz 2005-11-30 11:18 1.6M
all_est.txt.gz 2005-11-30 11:19 3.2M
chainMm7.txt.gz 2005-12-22 06:01 38M
chainMm7Link.txt.gz 2005-12-22 06:06 385M
netMm7.txt.gz 2005-12-22 06:11 68M
tableDescriptions.txt.gz 2006-02-12 08:36 5.0K
gbCdnaInfoNoGi.sql 2006-07-21 10:40 2.4K
gbCdnaInfoNoGi.txt.gz 2006-07-21 10:41 16M
trackDb.sql 2006-07-29 07:36 2.0K
trackDb.txt.gz 2006-07-29 07:36 9.1K
sex.sql 2006-07-30 16:05 1.2K
sex.txt.gz 2006-07-30 16:05 1.2K
cell.sql 2006-08-06 18:15 1.2K
cell.txt.gz 2006-08-06 18:15 91K
cds.sql 2006-08-13 18:16 1.2K
cds.txt.gz 2006-08-13 18:16 2.3M
productName.sql 2006-08-13 18:16 1.2K
productName.txt.gz 2006-08-13 18:16 5.1M
imageClone.sql 2006-08-13 18:17 1.3K
imageClone.txt.gz 2006-08-13 18:17 931K
gbStatus.sql 2006-08-13 18:17 1.9K
gbStatus.txt.gz 2006-08-13 18:17 11M
keyword.sql 2006-08-13 18:17 1.2K
keyword.txt.gz 2006-08-13 18:17 767K
geneName.sql 2006-08-13 18:17 1.2K
geneName.txt.gz 2006-08-13 18:17 2.5M
description.sql 2006-08-13 18:17 1.2K
gbLoaded.sql 2006-08-13 18:17 1.4K
gbLoaded.txt.gz 2006-08-13 18:17 20K
organism.sql 2006-08-13 18:17 1.2K
organism.txt.gz 2006-08-13 18:17 175K
description.txt.gz 2006-08-13 18:17 5.3M
author.sql 2006-08-13 18:17 1.2K
tissue.sql 2006-08-13 18:17 1.2K
tissue.txt.gz 2006-08-13 18:17 94K
author.txt.gz 2006-08-13 18:17 5.6M
library.sql 2006-08-13 18:17 1.2K
library.txt.gz 2006-08-13 18:17 170K
xenoRefSeqAli.sql 2006-08-13 18:17 2.2K
xenoRefSeqAli.txt.gz 2006-08-13 18:17 4.8M
gbSeq.sql 2006-08-13 18:17 1.6K
gbSeq.txt.gz 2006-08-13 18:17 21M
refLink.sql 2006-08-13 18:18 1.6K
refLink.txt.gz 2006-08-13 18:18 4.2M
development.sql 2006-08-13 18:18 1.2K
development.txt.gz 2006-08-13 18:18 70K
mrnaClone.sql 2006-08-13 18:18 1.2K
mrnaClone.txt.gz 2006-08-13 18:18 6.1M
refSeqSummary.sql 2006-08-13 18:18 1.3K
refSeqSummary.txt.gz 2006-08-13 18:18 4.0M
gbExtFile.sql 2006-08-13 18:18 1.2K
gbExtFile.txt.gz 2006-08-13 18:18 6.3K
source.sql 2006-08-13 18:18 1.2K
source.txt.gz 2006-08-13 18:18 205K
xenoRefGene.sql 2006-08-13 18:18 1.6K
xenoRefGene.txt.gz 2006-08-13 18:18 2.7M
all_mrna.sql 2006-08-13 18:18 2.2K
all_mrna.txt.gz 2006-08-13 18:18 105K
xenoMrna.sql 2006-08-13 18:18 2.2K
xenoMrna.txt.gz 2006-08-13 18:19 68M
mrnaOrientInfo.sql 2006-08-13 18:19 1.7K
mrnaOrientInfo.txt.gz 2006-08-13 18:19 31K
refSeqStatus.sql 2006-08-13 18:19 1.2K
refSeqStatus.txt.gz 2006-08-13 18:19 530K
gbCdnaInfo.sql 2006-08-13 18:19 2.4K
gbCdnaInfo.txt.gz 2006-08-13 18:20 21M
xenoRefFlat.sql 2006-08-13 18:20 1.6K
xenoRefFlat.txt.gz 2006-08-13 18:20 3.0M
all_est.sql 2013-10-01 12:48 1.3K
chainHg17.sql 2013-10-01 12:48 880
chainHg17Link.sql 2013-10-01 12:48 579
chainMm7.sql 2013-10-01 12:48 878
chainMm7Link.sql 2013-10-01 12:48 577
chromInfo.sql 2013-10-01 12:48 389
ctgPos2.sql 2013-10-01 12:48 615
estOrientInfo.sql 2013-10-01 12:48 855
gap.sql 2013-10-01 12:48 722
gbDelete_tmp.sql 2013-10-01 12:48 326
gc5Base.sql 2013-10-01 12:48 892
gold.sql 2013-10-01 12:48 799
grp.sql 2013-10-01 12:48 362
hgFindSpec.sql 2013-10-01 12:48 829
hgFindSpec_fanhsu.sql 2013-10-01 12:48 843
history.sql 2013-10-01 12:48 537
intronEst.sql 2013-10-01 12:48 1.3K
netHg17.sql 2013-10-01 12:48 1.3K
netMm7.sql 2013-10-01 12:48 1.3K
quality.sql 2013-10-01 12:48 892
rmsk.sql 2013-10-01 12:48 1.1K
scaffoldCoords.sql 2013-10-01 12:48 378
simpleRepeat.sql 2013-10-01 12:48 1.1K
tableDescriptions.sql 2013-10-01 12:48 403
trackDb_fanhsu.sql 2013-10-01 12:48 1.2K