This directory contains a dump of the UCSC genome annotation database
for the Jan. 2005 rhesus genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (rheMac1, BCM HGSC Mmul_0.1). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/rmacaque/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables. See
http://genome.ucsc.edu/goldenPath/gbdDescriptions.html for
descriptions of the tables.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/rheMac1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the rhesus assembly data at
http://genome.ucsc.edu/goldenPath/credits.html#rhesus_use.
Name Last modified Size Description
Parent Directory -
all_est.sql 2013-10-01 12:48 1.3K
all_est.txt.gz 2005-11-30 11:19 3.2M
all_mrna.sql 2006-08-13 18:18 2.2K
all_mrna.txt.gz 2006-08-13 18:18 105K
author.sql 2006-08-13 18:17 1.2K
author.txt.gz 2006-08-13 18:17 5.6M
cds.sql 2006-08-13 18:16 1.2K
cds.txt.gz 2006-08-13 18:16 2.3M
cell.sql 2006-08-06 18:15 1.2K
cell.txt.gz 2006-08-06 18:15 91K
chainHg17.sql 2013-10-01 12:48 880
chainHg17.txt.gz 2005-05-18 06:34 168M
chainHg17Link.sql 2013-10-01 12:48 579
chainHg17Link.txt.gz 2005-05-18 06:44 795M
chainMm7.sql 2013-10-01 12:48 878
chainMm7.txt.gz 2005-12-22 06:01 38M
chainMm7Link.sql 2013-10-01 12:48 577
chainMm7Link.txt.gz 2005-12-22 06:06 385M
chromInfo.sql 2013-10-01 12:48 389
chromInfo.txt.gz 2005-05-18 06:54 878K
ctgPos2.sql 2013-10-01 12:48 615
ctgPos2.txt.gz 2005-05-18 06:54 32
description.sql 2006-08-13 18:17 1.2K
description.txt.gz 2006-08-13 18:17 5.3M
development.sql 2006-08-13 18:18 1.2K
development.txt.gz 2006-08-13 18:18 70K
estOrientInfo.sql 2013-10-01 12:48 855
estOrientInfo.txt.gz 2005-11-30 11:18 814K
gap.sql 2013-10-01 12:48 722
gap.txt.gz 2005-05-18 06:54 2.9M
gbCdnaInfo.sql 2006-08-13 18:19 2.4K
gbCdnaInfo.txt.gz 2006-08-13 18:20 21M
gbCdnaInfoNoGi.sql 2006-07-21 10:40 2.4K
gbCdnaInfoNoGi.txt.gz 2006-07-21 10:41 16M
gbDelete_tmp.sql 2013-10-01 12:48 326
gbDelete_tmp.txt.gz 2005-09-16 05:05 180K
gbExtFile.sql 2006-08-13 18:18 1.2K
gbExtFile.txt.gz 2006-08-13 18:18 6.3K
gbLoaded.sql 2006-08-13 18:17 1.4K
gbLoaded.txt.gz 2006-08-13 18:17 20K
gbSeq.sql 2006-08-13 18:17 1.6K
gbSeq.txt.gz 2006-08-13 18:17 21M
gbStatus.sql 2006-08-13 18:17 1.9K
gbStatus.txt.gz 2006-08-13 18:17 11M
gc5Base.sql 2013-10-01 12:48 892
gc5Base.txt.gz 2005-05-18 06:56 14M
geneName.sql 2006-08-13 18:17 1.2K
geneName.txt.gz 2006-08-13 18:17 2.5M
gold.sql 2013-10-01 12:48 799
gold.txt.gz 2005-05-18 06:56 6.4M
grp.sql 2013-10-01 12:48 362
grp.txt.gz 2005-05-18 06:56 204
hgFindSpec.sql 2013-10-01 12:48 829
hgFindSpec.txt.gz 2005-05-18 06:56 275
hgFindSpec_fanhsu.sql 2013-10-01 12:48 843
hgFindSpec_fanhsu.txt.gz 2005-05-18 06:56 2.3K
history.sql 2013-10-01 12:48 537
history.txt.gz 2005-05-18 06:56 132
imageClone.sql 2006-08-13 18:17 1.3K
imageClone.txt.gz 2006-08-13 18:17 931K
intronEst.sql 2013-10-01 12:48 1.3K
intronEst.txt.gz 2005-11-30 11:18 1.6M
keyword.sql 2006-08-13 18:17 1.2K
keyword.txt.gz 2006-08-13 18:17 767K
library.sql 2006-08-13 18:17 1.2K
library.txt.gz 2006-08-13 18:17 170K
mrnaClone.sql 2006-08-13 18:18 1.2K
mrnaClone.txt.gz 2006-08-13 18:18 6.1M
mrnaOrientInfo.sql 2006-08-13 18:19 1.7K
mrnaOrientInfo.txt.gz 2006-08-13 18:19 31K
netHg17.sql 2013-10-01 12:48 1.3K
netHg17.txt.gz 2005-05-18 06:57 36M
netMm7.sql 2013-10-01 12:48 1.3K
netMm7.txt.gz 2005-12-22 06:11 68M
organism.sql 2006-08-13 18:17 1.2K
organism.txt.gz 2006-08-13 18:17 175K
productName.sql 2006-08-13 18:16 1.2K
productName.txt.gz 2006-08-13 18:16 5.1M
quality.sql 2013-10-01 12:48 892
quality.txt.gz 2005-06-16 04:59 62M
refLink.sql 2006-08-13 18:18 1.6K
refLink.txt.gz 2006-08-13 18:18 4.2M
refSeqStatus.sql 2006-08-13 18:19 1.2K
refSeqStatus.txt.gz 2006-08-13 18:19 530K
refSeqSummary.sql 2006-08-13 18:18 1.3K
refSeqSummary.txt.gz 2006-08-13 18:18 4.0M
rmsk.sql 2013-10-01 12:48 1.1K
rmsk.txt.gz 2005-05-18 07:00 119M
scaffoldCoords.sql 2013-10-01 12:48 378
scaffoldCoords.txt.gz 2005-05-18 07:01 4.4M
sex.sql 2006-07-30 16:05 1.2K
sex.txt.gz 2006-07-30 16:05 1.2K
simpleRepeat.sql 2013-10-01 12:48 1.1K
simpleRepeat.txt.gz 2005-05-18 07:01 15M
source.sql 2006-08-13 18:18 1.2K
source.txt.gz 2006-08-13 18:18 205K
tableDescriptions.sql 2013-10-01 12:48 403
tableDescriptions.txt.gz 2006-02-12 08:36 5.0K
tissue.sql 2006-08-13 18:17 1.2K
tissue.txt.gz 2006-08-13 18:17 94K
trackDb.sql 2006-07-29 07:36 2.0K
trackDb.txt.gz 2006-07-29 07:36 9.1K
trackDb_fanhsu.sql 2013-10-01 12:48 1.2K
trackDb_fanhsu.txt.gz 2005-05-18 07:02 55K
xenoMrna.sql 2006-08-13 18:18 2.2K
xenoMrna.txt.gz 2006-08-13 18:19 68M
xenoRefFlat.sql 2006-08-13 18:20 1.6K
xenoRefFlat.txt.gz 2006-08-13 18:20 3.0M
xenoRefGene.sql 2006-08-13 18:18 1.6K
xenoRefGene.txt.gz 2006-08-13 18:18 2.7M
xenoRefSeqAli.sql 2006-08-13 18:17 2.2K
xenoRefSeqAli.txt.gz 2006-08-13 18:17 4.8M