This directory contains a dump of the UCSC genome annotation database for the Feb. 2007 assembly of the P. pacificus genome (priPac1, Washington University School of Medicine GSC Pristionchus pacificus 5.0). The annotations were generated by UCSC and collaborators worldwide. This assembly was produced by the Genome Sequencing Center at the Washington University School of Medicine in St. Louis. For more information on the P. pacificus genome, see the project website: http://genome.wustl.edu/genome.cgi?GENOME=Pristionchus+pacificus+var.+california Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=priPac1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. --------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/priPac1/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) The P. pacificus sequence is made freely available to the community by the Genome Sequencing Center, Washington University School of Medicine, with the following understanding: 1. The data may be freely downloaded, used in analyses, and repackaged in databases. 2. Users are free to use the data in scientific papers analyzing these data if the providers of these data are properly acknowledged. See http://genome.ucsc.edu/goldenPath/credits.html for credit information. 3. See also: http://genome.wustl.edu/data.cgi 4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory - chrUn_chainCaePb1.sql 2007-08-03 16:05 1.7K chrUn_chainCaePb1.txt.gz 2007-08-03 16:06 31M chrUn_chainCaePb1Link.sql 2007-08-03 16:06 1.4K chrUn_chainCaePb1Link.txt.gz 2007-08-03 16:07 56M chrUn_chainCaeRem2.sql 2007-08-03 16:07 1.7K chrUn_chainCaeRem2.txt.gz 2007-08-03 16:07 3.2M chrUn_chainCaeRem2Link.sql 2007-08-03 16:07 1.4K chrUn_chainCaeRem2Link.txt.gz 2007-08-03 16:07 8.9M chrUn_chainCb3.sql 2007-08-03 16:07 1.7K chrUn_chainCb3.txt.gz 2007-08-03 16:07 1.4M chrUn_chainCb3Link.sql 2007-08-03 16:07 1.4K chrUn_chainCb3Link.txt.gz 2007-08-03 16:07 4.1M chrUn_gap.sql 2007-08-03 16:08 1.5K chrUn_gap.txt.gz 2007-08-03 16:08 246K chrUn_gold.sql 2007-08-03 16:08 1.6K chrUn_gold.txt.gz 2007-08-03 16:08 83K chrUn_rmsk.sql 2007-08-03 16:08 1.9K chrUn_rmsk.txt.gz 2007-08-03 16:08 1.0M chromInfo.sql 2007-08-03 16:08 1.2K chromInfo.txt.gz 2007-08-03 16:08 70 ctgPos2.sql 2007-08-03 16:08 1.4K ctgPos2.txt.gz 2007-08-03 16:08 256K gc5Base.sql 2007-08-03 16:09 1.7K gc5Base.txt.gz 2007-08-03 16:09 708K history.sql 2007-08-03 16:09 1.4K history.txt.gz 2007-08-03 16:09 506 netCaePb1.sql 2007-08-03 16:10 2.2K netCaePb1.txt.gz 2007-08-03 16:10 2.1M netCaeRem2.sql 2007-08-03 16:10 2.2K netCaeRem2.txt.gz 2007-08-03 16:10 1.5M netCb3.sql 2007-08-03 16:10 2.2K netCb3.txt.gz 2007-08-03 16:10 1.4M quality.sql 2007-08-03 16:10 1.7K quality.txt.gz 2007-08-03 16:10 2.9M simpleRepeat.sql 2007-08-03 16:10 2.0K simpleRepeat.txt.gz 2007-08-03 16:10 859K chrUn_chainCe6.sql 2008-08-01 03:29 1.7K chrUn_chainCe6.txt.gz 2008-08-01 03:30 876K chrUn_chainCe6Link.sql 2008-08-01 03:30 1.4K chrUn_chainCe6Link.txt.gz 2008-08-01 03:30 2.9M netCe6.sql 2008-08-01 03:30 2.2K netCe6.txt.gz 2008-08-01 03:30 1.3M blastCe6SG.sql 2008-08-20 03:18 2.1K blastCe6SG.txt.gz 2008-08-20 03:18 1.1M tRNAs.sql 2012-04-16 04:27 1.7K tRNAs.txt.gz 2012-04-16 04:27 35K grp.sql 2014-03-02 04:14 1.4K grp.txt.gz 2014-03-02 04:14 208 augustusGene.sql 2015-07-26 17:21 1.9K augustusGene.txt.gz 2015-07-26 17:21 3.2M microsat.sql 2015-08-24 00:34 1.5K microsat.txt.gz 2015-08-24 00:34 8.7K xenoMrna.sql 2016-02-21 22:47 2.3K xenoMrna.txt.gz 2016-02-21 22:47 80M all_est.sql 2016-05-15 11:17 2.1K all_est.txt.gz 2016-05-15 11:17 1.6M estOrientInfo.sql 2016-05-15 11:17 1.8K estOrientInfo.txt.gz 2016-05-15 11:17 450K intronEst.sql 2016-05-15 11:17 2.1K intronEst.txt.gz 2016-05-15 11:17 1.2M all_mrna.sql 2017-01-02 03:16 2.1K all_mrna.txt.gz 2017-01-02 03:16 8.8K mrnaOrientInfo.sql 2017-01-02 03:16 1.8K mrnaOrientInfo.txt.gz 2017-01-02 03:16 1.8K xenoRefGene.sql 2020-09-01 08:22 2.0K xenoRefGene.txt.gz 2020-09-01 08:22 10M xenoRefFlat.sql 2020-09-01 08:22 1.7K xenoRefFlat.txt.gz 2020-09-01 08:22 9.1M xenoRefSeqAli.sql 2020-09-01 08:22 2.1K xenoRefSeqAli.txt.gz 2020-09-01 08:22 11M gbLoaded.sql 2020-09-01 08:22 1.6K gbLoaded.txt.gz 2020-09-01 08:22 43K trackDb.sql 2023-03-28 13:52 2.1K trackDb.txt.gz 2023-03-28 13:52 24K hgFindSpec.sql 2023-03-28 13:52 1.8K hgFindSpec.txt.gz 2023-03-28 13:52 631 tableDescriptions.sql 2024-11-09 02:03 1.5K tableDescriptions.txt.gz 2024-11-09 02:03 5.0K tableList.sql 2024-11-10 03:12 1.6K tableList.txt.gz 2024-11-10 03:12 2.8K bigFiles.sql 2024-11-10 03:12 1.4K bigFiles.txt.gz 2024-11-10 03:12 33