This directory contains a dump of the UCSC genome annotation database for the Build 1 Version 1 (panTro1) chimp Arachne assembly produced by the Chimp Genome Sequencing Consortium. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=panTro1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ------------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/panTro1/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the annotations in this directory are freely usable for any purpose. The chimpanzee sequence is made freely available before scientific publication with the following understanding: 1. The data may be freely downloaded, used in analyses, and repackaged in databases. 2. Users are free to use the data in scientific papers analyzing particular genes and regions if the providers of these data are properly acknowledged. See http://genome.ucsc.edu/goldenPath/credits.html for credit information. 3. The centers producing the data reserve the right to publish the initial large-scale analyses of the data set, including large-scale identification of regions of evolutionary conservation and large-scale genomic assembly. Large-scale refers to regions with size on the order of a chromosome (that is, 30 Mb or more). 4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-22 21:40 38M xenoRefSeqAli.sql 2020-08-22 21:40 2.1K xenoRefGene.txt.gz 2020-08-22 21:37 40M xenoRefGene.sql 2020-08-22 21:37 2.0K xenoRefFlat.txt.gz 2020-08-22 21:37 35M xenoRefFlat.sql 2020-08-22 21:37 1.7K xenoMrna.txt.gz 2016-02-21 21:44 350M xenoMrna.sql 2016-02-21 21:43 2.1K twinscanPep.txt.gz 2004-04-28 05:14 5.4M twinscanPep.sql 2013-10-01 12:48 341 twinscan.txt.gz 2004-04-28 05:14 1.7M twinscan.sql 2013-10-01 12:48 1.0K trackDb.txt.gz 2023-03-28 13:52 31K trackDb.sql 2023-03-28 13:52 2.1K tableList.txt.gz 2024-12-08 03:31 27K tableList.sql 2024-12-08 03:31 1.6K tableDescriptions.txt.gz 2024-12-07 02:03 6.7K tableDescriptions.sql 2024-12-07 02:03 1.5K snpSeq.txt.gz 2006-12-02 14:06 9.2M snpSeq.sql 2006-12-02 14:06 1.1K snp125Exceptions.txt.gz 2006-08-30 08:44 389K snp125Exceptions.sql 2006-08-30 08:44 1.3K snp125ExceptionDesc.txt.gz 2006-08-30 08:43 374 snp125ExceptionDesc.sql 2006-08-30 08:43 1.2K snp125.txt.gz 2006-08-30 08:43 17M snp125.sql 2006-08-30 08:43 2.2K simpleRepeat.txt.gz 2004-02-24 06:47 14M simpleRepeat.sql 2013-10-01 12:48 1.1K seq.txt.gz 2004-06-01 08:05 1.7M seq.sql 2013-10-01 12:48 591 refSeqAli.txt.gz 2020-08-22 21:40 240K refSeqAli.sql 2020-08-22 21:40 2.1K refGene.txt.gz 2020-08-22 21:36 227K refGene.sql 2020-08-22 21:36 1.9K refFlat.txt.gz 2020-08-22 21:37 204K refFlat.sql 2020-08-22 21:37 1.7K quality.txt.gz 2004-02-24 06:46 76M quality.sql 2013-10-01 12:48 1.0K netMm8.txt.gz 2006-05-24 06:04 71M netMm8.sql 2013-10-01 12:48 1.3K netHg18.txt.gz 2006-04-30 18:10 13M netHg18.sql 2013-10-01 12:48 1.3K mrnaOrientInfo.txt.gz 2020-08-22 21:40 114K mrnaOrientInfo.sql 2020-08-22 21:40 1.8K microsat.txt.gz 2015-08-23 23:29 321K microsat.sql 2015-08-23 23:29 1.5K humanDels.txt.gz 2004-04-15 05:15 271K humanDels.sql 2013-10-01 12:48 601 history.txt.gz 2010-07-04 18:32 249 history.sql 2010-07-04 18:32 1.6K hgFindSpec.txt.gz 2023-03-28 13:52 1.1K hgFindSpec.sql 2023-03-28 13:52 1.8K grp.txt.gz 2014-03-02 04:14 223 grp.sql 2014-03-02 04:14 1.4K genscanPep.txt.gz 2004-05-08 07:05 9.3M genscanPep.sql 2013-10-01 12:48 339 genscan.txt.gz 2004-05-08 07:05 2.7M genscan.sql 2013-10-01 12:48 757 geneidPep.txt.gz 2004-04-08 05:16 6.4M geneidPep.sql 2013-10-01 12:48 337 geneid.txt.gz 2004-04-08 05:16 1.8M geneid.sql 2013-10-01 12:48 755 gc5Base.txt.gz 2004-02-24 06:44 13M gc5Base.sql 2013-10-01 12:48 1.0K gbLoaded.txt.gz 2020-08-22 21:41 43K gbLoaded.sql 2020-08-22 21:41 1.6K gbDelete_tmp.txt.gz 2009-03-01 12:43 159K gbDelete_tmp.sql 2009-03-01 12:43 1.2K extFile.txt.gz 2006-12-02 14:06 779 extFile.sql 2006-12-02 14:06 1.2K estOrientInfo.txt.gz 2016-05-15 11:03 234K estOrientInfo.sql 2016-05-15 11:03 1.8K ensPep.txt.gz 2004-06-24 06:11 5.6M ensPep.sql 2013-10-01 12:48 322 ensGtp.txt.gz 2004-06-24 06:11 259K ensGtp.sql 2013-10-01 12:48 438 ensGene.txt.gz 2004-06-24 06:11 2.4M ensGene.sql 2013-10-01 12:48 1.0K ctgPos.txt.gz 2004-04-29 05:46 5.2M ctgPos.sql 2013-10-01 12:48 586 cpgIsland.txt.gz 2004-02-24 06:18 501K cpgIsland.sql 2013-10-01 12:48 717 contigAcc.txt.gz 2004-10-31 04:13 1.8M contigAcc.sql 2013-10-01 12:48 343 chromInfo.txt.gz 2004-02-24 06:18 625 chromInfo.sql 2013-10-01 12:48 405 chrY_rmsk.txt.gz 2004-02-24 06:18 279K chrY_rmsk.sql 2013-10-01 12:48 1.1K chrY_random_rmsk.txt.gz 2004-02-24 06:18 80K chrY_random_rmsk.sql 2013-10-01 12:48 1.1K chrY_random_mrna.txt.gz 2016-06-26 07:25 266 chrY_random_mrna.sql 2016-06-26 07:25 2.1K chrY_random_intronEst.txt.gz 2016-05-15 11:03 46 chrY_random_intronEst.sql 2016-05-15 11:03 2.1K chrY_random_gold.txt.gz 2004-02-24 06:18 4.4K chrY_random_gold.sql 2013-10-01 12:48 804 chrY_random_gap.txt.gz 2004-02-24 06:18 7.3K chrY_random_gap.sql 2013-10-01 12:48 727 chrY_random_est.txt.gz 2016-05-15 11:03 294 chrY_random_est.sql 2016-05-15 11:03 2.1K chrY_random_chainMm8Link.txt.gz 2006-05-24 06:12 82K chrY_random_chainMm8Link.sql 2013-10-01 12:48 589 chrY_random_chainMm8.txt.gz 2006-05-24 06:11 17K chrY_random_chainMm8.sql 2013-10-01 12:48 824 chrY_random_chainHg18Link.txt.gz 2006-04-30 18:28 17M chrY_random_chainHg18Link.sql 2013-10-01 12:48 591 chrY_random_chainHg18.txt.gz 2006-04-30 18:28 2.9M chrY_random_chainHg18.sql 2013-10-01 12:48 868 chrY_mrna.txt.gz 2016-06-26 07:24 2.3K chrY_mrna.sql 2016-06-26 07:24 2.1K chrY_intronEst.txt.gz 2016-05-15 11:03 310 chrY_intronEst.sql 2016-05-15 11:03 2.1K chrY_gold.txt.gz 2004-02-24 06:17 5.9K chrY_gold.sql 2013-10-01 12:48 790 chrY_gap.txt.gz 2004-02-24 06:17 26K chrY_gap.sql 2013-10-01 12:48 713 chrY_est.txt.gz 2016-05-15 11:03 1.3K chrY_est.sql 2016-05-15 11:03 2.1K chrY_chainMm8Link.txt.gz 2006-05-24 06:11 515K chrY_chainMm8Link.sql 2013-10-01 12:48 575 chrY_chainMm8.txt.gz 2006-05-24 06:11 83K chrY_chainMm8.sql 2013-10-01 12:48 810 chrY_chainHg18Link.txt.gz 2006-04-30 18:26 11M chrY_chainHg18Link.sql 2013-10-01 12:48 577 chrY_chainHg18.txt.gz 2006-04-30 18:26 2.9M chrY_chainHg18.sql 2013-10-01 12:48 854 chrX_rmsk.txt.gz 2004-02-24 06:17 5.0M chrX_rmsk.sql 2013-10-01 12:48 1.1K chrX_random_rmsk.txt.gz 2004-02-24 06:16 549K chrX_random_rmsk.sql 2013-10-01 12:48 1.1K chrX_random_mrna.txt.gz 2016-05-15 11:03 1.1K chrX_random_mrna.sql 2016-05-15 11:03 2.1K chrX_random_intronEst.txt.gz 2016-05-15 11:03 622 chrX_random_intronEst.sql 2016-05-15 11:03 2.1K chrX_random_gold.txt.gz 2004-02-24 06:16 30K chrX_random_gold.sql 2013-10-01 12:48 804 chrX_random_gap.txt.gz 2004-02-24 06:16 68K chrX_random_gap.sql 2013-10-01 12:48 727 chrX_random_est.txt.gz 2016-05-15 11:03 1.7K chrX_random_est.sql 2016-05-15 11:03 2.1K chrX_random_chainMm8Link.txt.gz 2006-05-24 06:11 961K chrX_random_chainMm8Link.sql 2013-10-01 12:48 589 chrX_random_chainMm8.txt.gz 2006-05-24 06:10 112K chrX_random_chainMm8.sql 2013-10-01 12:48 824 chrX_random_chainHg18Link.txt.gz 2006-04-30 18:26 2.4M chrX_random_chainHg18Link.sql 2013-10-01 12:48 591 chrX_random_chainHg18.txt.gz 2006-04-30 18:21 588K chrX_random_chainHg18.sql 2013-10-01 12:48 868 chrX_mrna.txt.gz 2018-11-25 07:57 7.3K chrX_mrna.sql 2018-11-25 07:57 2.1K chrX_intronEst.txt.gz 2016-05-15 11:03 21K chrX_intronEst.sql 2016-05-15 11:03 2.1K chrX_gold.txt.gz 2004-02-24 06:16 16K chrX_gold.sql 2013-10-01 12:48 790 chrX_gap.txt.gz 2004-02-24 06:16 497K chrX_gap.sql 2013-10-01 12:48 713 chrX_est.txt.gz 2016-05-15 11:03 31K chrX_est.sql 2016-05-15 11:03 2.1K chrX_chainMm8Link.txt.gz 2006-05-24 06:10 12M chrX_chainMm8Link.sql 2013-10-01 12:48 575 chrX_chainMm8.txt.gz 2006-05-24 06:09 1.3M chrX_chainMm8.sql 2013-10-01 12:48 810 chrX_chainHg18Link.txt.gz 2006-04-30 18:21 25M chrX_chainHg18Link.sql 2013-10-01 12:48 577 chrX_chainHg18.txt.gz 2006-04-30 18:16 7.6M chrX_chainHg18.sql 2013-10-01 12:48 854 chrUn_random_rmsk.txt.gz 2004-02-24 06:15 3.5M chrUn_random_rmsk.sql 2013-10-01 12:48 1.1K chrUn_random_mrna.txt.gz 2016-05-15 11:03 8.3K chrUn_random_mrna.sql 2016-05-15 11:03 2.1K chrUn_random_intronEst.txt.gz 2016-05-15 11:03 11K chrUn_random_intronEst.sql 2016-05-15 11:03 2.1K chrUn_random_gold.txt.gz 2004-02-24 06:15 243K chrUn_random_gold.sql 2013-10-01 12:48 806 chrUn_random_gap.txt.gz 2004-02-24 06:15 283K chrUn_random_gap.sql 2013-10-01 12:48 729 chrUn_random_est.txt.gz 2016-05-15 11:03 21K chrUn_random_est.sql 2016-05-15 11:03 2.1K chrUn_random_chainMm8Link.txt.gz 2006-05-24 06:09 13M chrUn_random_chainMm8Link.sql 2013-10-01 12:48 591 chrUn_random_chainMm8.txt.gz 2006-05-24 06:08 1.9M chrUn_random_chainMm8.sql 2013-10-01 12:48 826 chrUn_random_chainHg18Link.txt.gz 2006-04-30 18:16 52M chrUn_random_chainHg18Link.sql 2013-10-01 12:48 593 chrUn_random_chainHg18.txt.gz 2006-04-30 18:14 17M chrUn_random_chainHg18.sql 2013-10-01 12:48 870 chrM_rmsk.txt.gz 2004-02-24 06:11 95 chrM_rmsk.sql 2013-10-01 12:48 1.1K chrM_mrna.txt.gz 2016-05-15 11:03 34 chrM_mrna.sql 2016-05-15 11:03 2.1K chrM_intronEst.txt.gz 2016-05-15 11:03 39 chrM_intronEst.sql 2016-05-15 11:03 2.1K chrM_gold.txt.gz 2004-02-24 06:11 70 chrM_gold.sql 2013-10-01 12:48 790 chrM_gap.txt.gz 2004-02-24 06:11 33 chrM_gap.sql 2013-10-01 12:48 713 chrM_est.txt.gz 2016-05-15 11:03 33 chrM_est.sql 2016-05-15 11:03 2.1K chrM_chainMm8Link.txt.gz 2006-05-24 06:08 1.1K chrM_chainMm8Link.sql 2013-10-01 12:48 575 chrM_chainMm8.txt.gz 2006-05-24 06:08 401 chrM_chainMm8.sql 2013-10-01 12:48 810 chrM_chainHg18Link.txt.gz 2006-04-30 18:14 3.6K chrM_chainHg18Link.sql 2013-10-01 12:48 577 chrM_chainHg18.txt.gz 2006-04-30 18:22 2.4K chrM_chainHg18.sql 2013-10-01 12:48 854 chr23_rmsk.txt.gz 2004-02-24 06:06 1.5M chr23_rmsk.sql 2013-10-01 12:48 1.1K chr23_random_rmsk.txt.gz 2004-02-24 06:06 135K chr23_random_rmsk.sql 2013-10-01 12:48 1.1K chr23_random_mrna.txt.gz 2016-05-15 11:04 1.6K chr23_random_mrna.sql 2016-05-15 11:04 2.1K chr23_random_intronEst.txt.gz 2016-05-15 11:03 1.4K chr23_random_intronEst.sql 2016-05-15 11:03 2.1K chr23_random_gold.txt.gz 2004-02-24 06:06 5.1K chr23_random_gold.sql 2013-10-01 12:48 806 chr23_random_gap.txt.gz 2004-02-24 06:06 8.6K chr23_random_gap.sql 2013-10-01 12:48 729 chr23_random_est.txt.gz 2016-05-15 11:03 1.7K chr23_random_est.sql 2016-05-15 11:03 2.1K chr23_random_chainMm8Link.txt.gz 2006-05-24 06:09 457K chr23_random_chainMm8Link.sql 2013-10-01 12:48 591 chr23_random_chainMm8.txt.gz 2006-05-24 06:08 91K chr23_random_chainMm8.sql 2013-10-01 12:48 826 chr23_random_chainHg18Link.txt.gz 2006-04-30 18:27 1.2M chr23_random_chainHg18Link.sql 2013-10-01 12:48 593 chr23_random_chainHg18.txt.gz 2006-04-30 18:25 526K chr23_random_chainHg18.sql 2013-10-01 12:48 870 chr23_mrna.txt.gz 2016-05-15 11:03 7.3K chr23_mrna.sql 2016-05-15 11:03 2.1K chr23_intronEst.txt.gz 2016-05-15 11:03 12K chr23_intronEst.sql 2016-05-15 11:03 2.1K chr23_gold.txt.gz 2004-02-24 06:06 3.9K chr23_gold.sql 2013-10-01 12:48 792 chr23_gap.txt.gz 2004-02-24 06:06 58K chr23_gap.sql 2013-10-01 12:48 715 chr23_est.txt.gz 2016-05-15 11:03 16K chr23_est.sql 2016-05-15 11:03 2.1K chr23_chainMm8Link.txt.gz 2006-05-24 06:02 3.5M chr23_chainMm8Link.sql 2013-10-01 12:48 577 chr23_chainMm8.txt.gz 2006-05-24 06:02 297K chr23_chainMm8.sql 2013-10-01 12:48 812 chr23_chainHg18Link.txt.gz 2006-04-30 18:25 6.1M chr23_chainHg18Link.sql 2013-10-01 12:48 579 chr23_chainHg18.txt.gz 2006-04-30 18:25 2.1M chr23_chainHg18.sql 2013-10-01 12:48 856 chr22_rmsk.txt.gz 2004-02-24 06:06 1.3M chr22_rmsk.sql 2013-10-01 12:48 1.1K chr22_random_rmsk.txt.gz 2004-02-24 06:06 85K chr22_random_rmsk.sql 2013-10-01 12:48 1.1K chr22_random_mrna.txt.gz 2016-05-15 11:03 42 chr22_random_mrna.sql 2016-05-15 11:03 2.1K chr22_random_intronEst.txt.gz 2016-05-15 11:03 184 chr22_random_intronEst.sql 2016-05-15 11:03 2.1K chr22_random_gold.txt.gz 2004-02-24 06:06 3.5K chr22_random_gold.sql 2013-10-01 12:48 806 chr22_random_gap.txt.gz 2004-02-24 06:06 5.2K chr22_random_gap.sql 2013-10-01 12:48 729 chr22_random_est.txt.gz 2016-05-15 11:03 267 chr22_random_est.sql 2016-05-15 11:03 2.1K chr22_random_chainMm8Link.txt.gz 2006-05-24 06:05 247K chr22_random_chainMm8Link.sql 2013-10-01 12:48 591 chr22_random_chainMm8.txt.gz 2006-05-24 06:02 29K chr22_random_chainMm8.sql 2013-10-01 12:48 826 chr22_random_chainHg18Link.txt.gz 2006-04-30 18:24 1.2M chr22_random_chainHg18Link.sql 2013-10-01 12:48 593 chr22_random_chainHg18.txt.gz 2006-04-30 18:24 344K chr22_random_chainHg18.sql 2013-10-01 12:48 870 chr22_mrna.txt.gz 2016-05-15 11:04 2.5K chr22_mrna.sql 2016-05-15 11:04 2.1K chr22_intronEst.txt.gz 2016-05-15 11:03 4.8K chr22_intronEst.sql 2016-05-15 11:03 2.1K chr22_gold.txt.gz 2004-02-24 06:06 1.9K chr22_gold.sql 2013-10-01 12:48 792 chr22_gap.txt.gz 2004-02-24 06:06 45K chr22_gap.sql 2013-10-01 12:48 715 chr22_est.txt.gz 2016-05-15 11:03 6.3K chr22_est.sql 2016-05-15 11:03 2.1K chr22_chainMm8Link.txt.gz 2006-05-24 06:02 3.5M chr22_chainMm8Link.sql 2013-10-01 12:48 577 chr22_chainMm8.txt.gz 2006-05-24 06:02 275K chr22_chainMm8.sql 2013-10-01 12:48 812 chr22_chainHg18Link.txt.gz 2006-04-30 18:23 6.1M chr22_chainHg18Link.sql 2013-10-01 12:48 579 chr22_chainHg18.txt.gz 2006-04-30 18:22 1.6M chr22_chainHg18.sql 2013-10-01 12:48 856 chr21_rmsk.txt.gz 2004-02-24 06:06 2.7M chr21_rmsk.sql 2013-10-01 12:48 1.1K chr21_random_rmsk.txt.gz 2004-02-24 06:06 217K chr21_random_rmsk.sql 2013-10-01 12:48 1.1K chr21_random_mrna.txt.gz 2016-05-15 11:03 1.0K chr21_random_mrna.sql 2016-05-15 11:03 2.1K chr21_random_intronEst.txt.gz 2016-05-15 11:03 1.9K chr21_random_intronEst.sql 2016-05-15 11:03 2.1K chr21_random_gold.txt.gz 2004-02-24 06:06 6.3K chr21_random_gold.sql 2013-10-01 12:48 806 chr21_random_gap.txt.gz 2004-02-24 06:06 12K chr21_random_gap.sql 2013-10-01 12:48 729 chr21_random_est.txt.gz 2016-05-15 11:03 2.1K chr21_random_est.sql 2016-05-15 11:03 2.1K chr21_random_chainMm8Link.txt.gz 2006-05-24 06:01 494K chr21_random_chainMm8Link.sql 2013-10-01 12:48 591 chr21_random_chainMm8.txt.gz 2006-05-24 06:01 58K chr21_random_chainMm8.sql 2013-10-01 12:48 826 chr21_random_chainHg18Link.txt.gz 2006-04-30 18:22 1.6M chr21_random_chainHg18Link.sql 2013-10-01 12:48 593 chr21_random_chainHg18.txt.gz 2006-04-30 18:22 463K chr21_random_chainHg18.sql 2013-10-01 12:48 870 chr21_mrna.txt.gz 2016-05-15 11:03 8.1K chr21_mrna.sql 2016-05-15 11:03 2.1K chr21_intronEst.txt.gz 2016-05-15 11:03 17K chr21_intronEst.sql 2016-05-15 11:03 2.1K chr21_gold.txt.gz 2004-02-24 06:06 1.7K chr21_gold.sql 2013-10-01 12:48 792 chr21_gap.txt.gz 2004-02-24 06:06 82K chr21_gap.sql 2013-10-01 12:48 715 chr21_est.txt.gz 2016-05-15 11:03 23K chr21_est.sql 2016-05-15 11:03 2.1K chr21_chainMm8Link.txt.gz 2006-05-24 06:01 7.6M chr21_chainMm8Link.sql 2013-10-01 12:48 577 chr21_chainMm8.txt.gz 2006-05-24 06:01 614K chr21_chainMm8.sql 2013-10-01 12:48 812 chr21_chainHg18Link.txt.gz 2006-04-30 18:21 11M chr21_chainHg18Link.sql 2013-10-01 12:48 579 chr21_chainHg18.txt.gz 2006-04-30 18:21 3.5M chr21_chainHg18.sql 2013-10-01 12:48 856 chr20_rmsk.txt.gz 2004-02-24 06:06 2.6M chr20_rmsk.sql 2013-10-01 12:48 1.1K chr20_random_rmsk.txt.gz 2004-02-24 06:06 285K chr20_random_rmsk.sql 2013-10-01 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