This directory contains the Nov. 13 2004 ARACHNE assembly of the chimpanzee genome (UCSC version panTro1) produced by the Chimpanzee Sequencing Consortium. Files included in this directory: - chr*.fa.zip: compressed FASTA sequence of each chromosome. Each chromosome is in a separate file in a zipped Fasta format. Repeats -- which are shown in lower case -- are annotated by RepeatMasker run at the sensitive setting. The primate library and 3 chimp repeats from the chimp analysis group were used with the 6/19/03 release of RepeatMasker. Tandem repeats of period 12 or less are also masked out using Tandem Repeats Finder. The main assembly is contained in the chrN.fa files, where N is the name of the chromosome. The chrN_random.fa files contain sequence that cannot be placed with certainty at a specific place on the chromosome. ------------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/panTro1/chromosomes. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) The chimp sequence is made freely available before scientific publication with the following understanding: 1. The data may be freely downloaded, used in analyses, and repackaged in databases. 2. Users are free to use the data in scientific papers analyzing particular genes and regions if the providers of these data are properly acknowledged. See http://genome.ucsc.edu/goldenPath/credits.html for credit information. 3. The centers producing the data reserve the right to publish the initial large-scale analyses of the data set, including large-scale identification of regions of evolutionary conservation and large-scale genomic assembly. Large-scale refers to regions with size on the order of a chromosome (that is, 30 Mb or more). 4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory - md5sum.txt 2004-02-19 21:11 2.5K chrUn_random.fa.zip 2004-01-26 15:23 27M chr1_random.fa.zip 2004-01-26 15:22 6.5M chr23_random.fa.zip 2004-01-23 10:01 928K chr23.fa.zip 2004-01-23 10:01 8.8M chr22_random.fa.zip 2004-01-23 10:00 692K chr22.fa.zip 2004-01-23 10:00 9.6M chr21_random.fa.zip 2004-01-23 10:00 1.4M chr21.fa.zip 2004-01-23 10:00 17M chr20_random.fa.zip 2004-01-23 09:59 1.6M chr20.fa.zip 2004-01-23 09:59 14M chr19_random.fa.zip 2004-01-23 09:59 8.5M chr19.fa.zip 2004-01-23 09:58 15M chr18_random.fa.zip 2004-01-23 09:58 2.4M chr18.fa.zip 2004-01-23 09:58 20M chr17_random.fa.zip 2004-01-23 09:57 2.8M chr17.fa.zip 2004-01-23 09:57 20M chr16_random.fa.zip 2004-01-23 09:56 3.2M chr16.fa.zip 2004-01-23 09:56 21M chr15_random.fa.zip 2004-01-23 09:55 1.6M chr15.fa.zip 2004-01-23 09:55 25M chr14_random.fa.zip 2004-01-23 09:53 7.0M chr14.fa.zip 2004-01-23 09:53 23M chr13_random.fa.zip 2004-01-23 09:52 2.9M chr13.fa.zip 2004-01-23 09:52 37M chr12_random.fa.zip 2004-01-23 09:50 3.1M chr12.fa.zip 2004-01-23 09:50 30M chr11_random.fa.zip 2004-01-23 09:49 2.9M chr11.fa.zip 2004-01-23 09:49 30M chr10_random.fa.zip 2004-01-23 09:48 2.6M chr10.fa.zip 2004-01-23 09:48 30M chrY_random.fa.zip 2004-01-23 09:46 710K chrY.fa.zip 2004-01-23 09:46 2.2M chrX_random.fa.zip 2004-01-23 09:46 4.2M chrX.fa.zip 2004-01-23 09:46 35M chrM.fa.zip 2004-01-23 09:45 626 chr9_random.fa.zip 2004-01-23 09:45 3.3M chr9.fa.zip 2004-01-23 09:44 37M chr8_random.fa.zip 2004-01-23 09:43 3.2M chr8.fa.zip 2004-01-23 09:43 37M chr7_random.fa.zip 2004-01-23 09:41 3.1M chr7.fa.zip 2004-01-23 09:41 41M chr6_random.fa.zip 2004-01-23 09:39 5.2M chr6.fa.zip 2004-01-23 09:39 42M chr5_random.fa.zip 2004-01-23 09:37 4.0M chr5.fa.zip 2004-01-23 09:37 48M chr4_random.fa.zip 2004-01-23 09:34 3.8M chr4.fa.zip 2004-01-23 09:34 51M chr3_random.fa.zip 2004-01-23 09:31 3.7M chr3.fa.zip 2004-01-23 09:31 54M chr2_random.fa.zip 2004-01-23 09:29 4.1M chr2.fa.zip 2004-01-23 09:28 56M chr1.fa.zip 2004-01-23 09:26 62M