This directory contains a dump of the UCSC genome annotation
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.
The directory is updated nightly. The .txt.gz files contain the
database tables in a tab-delimited format compressed with gzip.
The .sql files contain the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/monDom5/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-----------------------------------------------------------
All the tables in this directory are freely usable for any
purpose. The opossum sequence is made freely available before scientific
publication with the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged
in databases.
2. Users are free to use the data in scientific papers analyzing
particular genes and regions if the providers of these data (The
Broad Institute) are properly acknowledged.
3. The centers producing the data reserve the right to publish the
initial large-scale analyses of the data set, including large-scale
identification of regions of evolutionary conservation and large-scale
genomic assembly. Large-scale refers to regions with size on the order
of a chromosome (that is, 30 Mb or more).
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
gap.sql 2009-07-20 15:57 1.5K
gap.txt.gz 2009-07-20 15:57 1.0M
genscan.sql 2009-07-20 15:57 1.6K
genscan.txt.gz 2009-07-20 15:57 2.3M
nestedRepeats.sql 2009-07-20 15:57 1.9K
nestedRepeats.txt.gz 2009-07-20 15:57 23M
genscanPep.sql 2009-07-20 15:58 1.2K
genscanPep.txt.gz 2009-07-20 15:58 7.9M
cpgIslandExt.sql 2009-07-20 15:58 1.6K
cpgIslandExt.txt.gz 2009-07-20 15:58 484K
chromInfo.sql 2009-07-20 15:58 1.2K
chromInfo.txt.gz 2009-07-20 15:58 164
quality.sql 2009-07-20 15:58 1.7K
quality.txt.gz 2009-07-20 15:59 64M
windowmaskerSdust.sql 2009-07-20 15:59 1.4K
windowmaskerSdust.txt.gz 2009-07-20 16:00 204M
gc5Base.sql 2009-07-20 16:01 1.7K
gc5Base.txt.gz 2009-07-20 16:02 14M
nscanGene.sql 2009-07-20 16:02 1.9K
nscanGene.txt.gz 2009-07-20 16:02 3.6M
blastHg18KG.sql 2009-07-20 16:02 2.1K
blastHg18KG.txt.gz 2009-07-20 16:02 3.6M
rmsk.sql 2009-07-20 16:02 1.9K
rmsk.txt.gz 2009-07-20 16:03 199M
history.sql 2009-07-20 16:05 1.4K
history.txt.gz 2009-07-20 16:05 3.7K
nscanPep.sql 2009-07-20 16:05 1.1K
nscanPep.txt.gz 2009-07-20 16:05 12M
simpleRepeat.sql 2009-07-20 16:05 1.9K
simpleRepeat.txt.gz 2009-07-20 16:05 26M
extFile.sql 2009-07-20 16:05 1.3K
extFile.txt.gz 2009-07-20 16:05 223
gold.sql 2009-07-20 16:06 1.6K
gold.txt.gz 2009-07-20 16:06 1.3M
chainGalGal3Link.sql 2010-12-10 10:57 1.5K
chainGalGal3Link.txt.gz 2010-12-10 10:58 144M
chainCanFam2Link.sql 2010-12-10 11:00 1.5K
chainCanFam2Link.txt.gz 2010-12-10 11:01 330M
chainAilMel1.sql 2010-12-10 11:02 1.6K
chainAilMel1.txt.gz 2010-12-10 11:02 33M
chainDanRer5.sql 2010-12-10 11:02 1.8K
chainDanRer5.txt.gz 2010-12-10 11:02 19M
netOryCun2.sql 2010-12-10 11:03 2.0K
netOryCun2.txt.gz 2010-12-10 11:03 18M
phastCons9way.sql 2010-12-10 11:03 1.9K
phastCons9way.txt.gz 2010-12-10 11:03 76M
chainCalJac3Link.sql 2010-12-10 11:03 1.5K
chainCalJac3Link.txt.gz 2010-12-10 11:05 758M
chainOryCun2Link.sql 2010-12-10 11:08 1.5K
chainOryCun2Link.txt.gz 2010-12-10 11:10 966M
chainCalJac3.sql 2010-12-10 11:20 1.6K
chainCalJac3.txt.gz 2010-12-10 11:21 272M
phastConsElements9way.sql 2010-12-10 11:22 1.5K
phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M
multiz9way.sql 2010-12-10 11:22 1.5K
multiz9way.txt.gz 2010-12-10 11:22 93M
netPonAbe2.sql 2010-12-10 11:22 2.3K
netPonAbe2.txt.gz 2010-12-10 11:23 28M
chainEquCab2.sql 2010-12-10 11:23 1.8K
chainEquCab2.txt.gz 2010-12-10 11:23 254M
chainSusScr2.sql 2010-12-10 11:24 1.6K
chainSusScr2.txt.gz 2010-12-10 11:25 153M
chainHg19Link.sql 2010-12-10 11:25 1.5K
chainHg19Link.txt.gz 2010-12-10 11:28 1.2G
chainOrnAna1.sql 2010-12-10 11:34 1.8K
chainOrnAna1.txt.gz 2010-12-10 11:34 88M
chainPonAbe2Link.sql 2010-12-10 11:36 1.5K
chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G
netGalGal3.sql 2010-12-10 11:45 2.3K
netGalGal3.txt.gz 2010-12-10 11:45 9.3M
chainSusScr2Link.sql 2010-12-10 11:45 1.5K
chainSusScr2Link.txt.gz 2010-12-10 11:46 520M
netCanFam2.sql 2010-12-10 11:48 2.3K
netCanFam2.txt.gz 2010-12-10 11:48 26M
chainFelCat4.sql 2010-12-10 11:48 1.6K
chainFelCat4.txt.gz 2010-12-10 11:48 28M
chainOrnAna1Link.sql 2010-12-10 11:49 1.5K
chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M
netFelCat4.sql 2010-12-10 11:51 2.0K
netFelCat4.txt.gz 2010-12-10 11:51 18M
chainCanFam2.sql 2010-12-10 11:51 1.8K
chainCanFam2.txt.gz 2010-12-10 11:51 39M
chainFelCat4Link.sql 2010-12-10 11:51 1.5K
chainFelCat4Link.txt.gz 2010-12-10 11:52 165M
chainGalGal3.sql 2010-12-10 11:53 1.8K
chainGalGal3.txt.gz 2010-12-10 11:53 40M
netHg19.sql 2010-12-10 11:53 2.3K
netHg19.txt.gz 2010-12-10 11:53 34M
netOrnAna1.sql 2010-12-10 11:56 2.3K
netOrnAna1.txt.gz 2010-12-10 11:56 23M
multiz9waySummary.sql 2010-12-10 11:57 1.6K
multiz9waySummary.txt.gz 2010-12-10 11:57 33M
netSusScr2.sql 2010-12-10 11:57 2.0K
netSusScr2.txt.gz 2010-12-10 11:57 17M
netEquCab2.sql 2010-12-10 11:57 2.3K
netEquCab2.txt.gz 2010-12-10 11:57 28M
chainEquCab2Link.sql 2010-12-10 12:05 1.5K
chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G
chainPonAbe2.sql 2010-12-10 12:19 1.8K
chainPonAbe2.txt.gz 2010-12-10 12:20 430M
multiz9wayFrames.sql 2010-12-10 12:25 1.8K
multiz9wayFrames.txt.gz 2010-12-10 12:25 18M
chainHg19.sql 2010-12-10 12:25 1.8K
chainHg19.txt.gz 2010-12-10 12:26 340M
chainOryCun2.sql 2010-12-10 12:27 1.6K
chainOryCun2.txt.gz 2010-12-10 12:28 337M
netCalJac3.sql 2010-12-10 12:29 2.0K
netCalJac3.txt.gz 2010-12-10 12:30 21M
chainDanRer5Link.sql 2010-12-10 12:30 1.5K
chainDanRer5Link.txt.gz 2010-12-10 12:30 98M
chainAilMel1Link.sql 2010-12-10 12:31 1.5K
chainAilMel1Link.txt.gz 2010-12-10 12:31 213M
netDanRer5.sql 2010-12-10 12:33 2.3K
netDanRer5.txt.gz 2010-12-10 12:33 8.8M
netAilMel1.sql 2010-12-10 12:33 2.0K
netAilMel1.txt.gz 2010-12-10 12:33 21M
all_est.sql 2011-04-18 07:18 2.0K
all_est.txt.gz 2011-04-18 07:18 17K
intronEst.sql 2011-04-18 07:19 2.0K
intronEst.txt.gz 2011-04-18 07:19 9.5K
estOrientInfo.sql 2011-04-18 07:22 1.7K
estOrientInfo.txt.gz 2011-04-18 07:22 6.6K
chainOviAri1Link.sql 2011-04-25 09:58 1.5K
chainOviAri1Link.txt.gz 2011-04-25 09:59 114M
netOviAri1.sql 2011-04-25 10:01 2.0K
netOviAri1.txt.gz 2011-04-25 10:01 16M
chainOviAri1.sql 2011-04-25 10:01 1.6K
chainOviAri1.txt.gz 2011-04-25 10:01 33M
netPanTro3.sql 2011-06-12 11:15 2.0K
netPanTro3.txt.gz 2011-06-12 11:15 34M
chainPanTro3Link.sql 2011-06-12 11:15 1.5K
chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G
chainPanTro3.sql 2011-06-12 11:24 1.6K
chainPanTro3.txt.gz 2011-06-12 11:25 344M
netMelGal1.sql 2011-11-06 14:42 2.0K
netMelGal1.txt.gz 2011-11-06 14:42 8.5M
chainMelGal1Link.sql 2011-11-06 14:53 1.5K
chainMelGal1Link.txt.gz 2011-11-06 14:53 36M
chainMelGal1.sql 2011-11-06 14:55 1.6K
chainMelGal1.txt.gz 2011-11-06 14:55 7.9M
chainLoxAfr3.sql 2011-11-21 19:08 1.6K
chainLoxAfr3.txt.gz 2011-11-21 19:09 420M
netLoxAfr3.sql 2011-11-21 19:12 2.0K
netLoxAfr3.txt.gz 2011-11-21 19:12 22M
chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K
chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G
tRNAs.sql 2012-04-16 03:06 1.7K
tRNAs.txt.gz 2012-04-16 03:06 12K
chainBosTau7Link.sql 2012-06-16 19:47 1.5K
chainBosTau7Link.txt.gz 2012-06-16 19:57 776M
netBosTau7.sql 2012-06-16 20:25 2.0K
netBosTau7.txt.gz 2012-06-16 20:26 20M
chainBosTau7.sql 2012-06-16 20:27 1.6K
chainBosTau7.txt.gz 2012-06-16 20:30 250M
netRheMac3.sql 2012-12-02 18:39 2.1K
netRheMac3.txt.gz 2012-12-02 18:39 21M
chainRheMac3.sql 2012-12-02 18:39 1.7K
chainRheMac3.txt.gz 2012-12-02 18:40 559M
chainRheMac3Link.sql 2012-12-02 18:42 1.6K
chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G
chainPetMar2Link.sql 2013-01-24 03:47 1.6K
chainPetMar2Link.txt.gz 2013-01-24 03:47 43M
netPetMar2.sql 2013-01-24 03:47 2.1K
netPetMar2.txt.gz 2013-01-24 03:47 2.8M
chainPetMar2.sql 2013-01-24 03:48 1.7K
chainPetMar2.txt.gz 2013-01-24 03:48 13M
netCerSim1.sql 2013-01-29 23:26 2.1K
netCerSim1.txt.gz 2013-01-29 23:26 29M
chainCerSim1Link.sql 2013-01-29 23:26 1.6K
chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G
chainCerSim1.sql 2013-01-29 23:32 1.7K
chainCerSim1.txt.gz 2013-01-29 23:32 253M
cytoBandIdeo.sql 2013-04-28 19:07 1.5K
cytoBandIdeo.txt.gz 2013-04-28 19:07 155
chainMm10.sql 2013-10-27 18:38 1.7K
chainMm10.txt.gz 2013-10-27 18:38 198M
chainMm10Link.sql 2013-10-27 18:38 1.5K
chainMm10Link.txt.gz 2013-10-27 18:40 1.1G
netMm10.sql 2013-10-27 18:43 2.1K
netMm10.txt.gz 2013-10-27 18:44 23M
grp.sql 2014-03-02 04:14 1.4K
grp.txt.gz 2014-03-02 04:14 208
cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K
cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K
augustusGene.sql 2015-07-26 16:46 1.9K
augustusGene.txt.gz 2015-07-26 16:46 2.0M
microsat.sql 2015-08-23 21:56 1.5K
microsat.txt.gz 2015-08-23 21:56 1.0M
chainMelGal5.sql 2017-03-20 09:11 1.7K
chainMelGal5.txt.gz 2017-03-20 09:11 12M
chainMelGal5Link.sql 2017-03-20 09:11 1.5K
chainMelGal5Link.txt.gz 2017-03-20 09:11 42M
netMelGal5.sql 2017-03-20 09:13 2.1K
netMelGal5.txt.gz 2017-03-20 09:13 8.5M
chainRn6.sql 2017-03-27 16:45 1.7K
chainRn6.txt.gz 2017-03-27 16:46 103M
chainRn6Link.sql 2017-03-27 16:49 1.5K
chainRn6Link.txt.gz 2017-03-27 16:57 749M
netRn6.sql 2017-03-27 17:27 2.1K
netRn6.txt.gz 2017-03-27 17:27 24M
chromAlias.sql 2017-09-03 05:42 1.4K
chromAlias.txt.gz 2017-09-03 05:42 205
chainXenTro9.sql 2017-12-14 12:34 1.7K
chainXenTro9.txt.gz 2017-12-14 12:34 230M
chainXenTro9Link.sql 2017-12-14 12:35 1.5K
chainXenTro9Link.txt.gz 2017-12-14 12:36 809M
netXenTro9.sql 2017-12-14 12:38 2.1K
netXenTro9.txt.gz 2017-12-14 12:38 7.8M
ensGtp.sql 2019-02-10 03:42 1.4K
ensGtp.txt.gz 2019-02-10 03:42 327K
ensPep.sql 2019-02-10 03:42 1.3K
ensPep.txt.gz 2019-02-10 03:42 6.4M
ensGene.sql 2019-02-10 03:42 1.9K
ensGene.txt.gz 2019-02-10 03:42 2.5M
ensemblSource.sql 2019-02-10 03:42 1.4K
ensemblSource.txt.gz 2019-02-10 03:42 96K
ensemblToGeneName.sql 2019-02-10 03:42 1.4K
ensemblToGeneName.txt.gz 2019-02-10 03:42 104K
chainXenTro3.sql 2019-06-02 03:21 1.7K
chainXenTro3.txt.gz 2019-06-02 03:21 223M
chainXenTro3Link.sql 2019-06-02 03:22 1.5K
chainXenTro3Link.txt.gz 2019-06-02 03:23 788M
netXenTro3.sql 2019-06-02 03:26 2.1K
netXenTro3.txt.gz 2019-06-02 03:26 7.5M
chainNeoSch1.sql 2020-07-17 10:23 1.7K
chainNeoSch1.txt.gz 2020-07-17 10:23 318M
chainNeoSch1Link.sql 2020-07-17 10:30 1.6K
chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G
netNeoSch1.sql 2020-07-17 10:31 2.1K
netNeoSch1.txt.gz 2020-07-17 10:31 33M
all_mrna.sql 2020-08-19 18:14 2.1K
all_mrna.txt.gz 2020-08-19 18:14 61K
xenoMrna.sql 2020-08-19 18:14 2.1K
xenoMrna.txt.gz 2020-08-19 18:14 213M
refGene.sql 2020-08-19 18:28 1.9K
refGene.txt.gz 2020-08-19 18:28 43K
refFlat.sql 2020-08-19 18:28 1.7K
refFlat.txt.gz 2020-08-19 18:28 38K
xenoRefGene.sql 2020-08-19 18:32 2.0K
xenoRefGene.txt.gz 2020-08-19 18:32 26M
xenoRefFlat.sql 2020-08-19 18:32 1.7K
xenoRefFlat.txt.gz 2020-08-19 18:32 23M
mrnaOrientInfo.sql 2020-08-19 18:32 1.8K
mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K
refSeqAli.sql 2020-08-19 18:45 2.1K
refSeqAli.txt.gz 2020-08-19 18:45 40K
xenoRefSeqAli.sql 2020-08-19 18:45 2.1K
xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M
gbLoaded.sql 2020-08-19 18:55 1.6K
gbLoaded.txt.gz 2020-08-19 18:55 111K
chainMm39.sql 2020-11-25 07:47 1.7K
chainMm39.txt.gz 2020-11-25 07:47 41M
chainMm39Link.sql 2020-11-25 07:49 1.6K
chainMm39Link.txt.gz 2020-11-25 07:49 240M
netMm39.sql 2020-11-25 07:50 2.1K
netMm39.txt.gz 2020-11-25 07:50 15M
trackDb.sql 2024-01-31 15:13 2.1K
trackDb.txt.gz 2024-01-31 15:13 73K
hgFindSpec.sql 2024-01-31 15:13 1.8K
hgFindSpec.txt.gz 2024-01-31 15:13 1.0K
tableDescriptions.sql 2024-12-07 02:03 1.5K
tableDescriptions.txt.gz 2024-12-07 02:03 9.1K
tableList.sql 2024-12-08 03:20 1.6K
tableList.txt.gz 2024-12-08 03:20 7.2K
bigFiles.sql 2024-12-08 03:20 1.4K
bigFiles.txt.gz 2024-12-08 03:20 33