This directory contains a dump of the UCSC genome annotation database for the Build 32 assembly of the mouse genome (mm4, Oct. 2003) from the Mouse Genome Sequencing Consortium. The directory is updated nightly. Files included in this directory: - *.sql files: contain the MySQL commands used to create the tables. See http://genome.ucsc.edu/goldenPath/gbdDescriptions.html for descriptions of the tables. - *.txt.gz files: contain the database tables in a tab-delimited format compressed with gzip. -------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/mm4/database. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the files and tables in this directory are freely usable for any purpose with the exception of: Swiss-Prot data in knownGene.txt - The Swiss-Prot entries in the Known Genes annotation track are copyrighted. They are produced through a collaboration between the Swiss Institute of Bioinformatics and the EMBL Outstation - the European Bioinformatics Institute. There are no restrictions on their use by non-profit institutions as long as their content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (see http://www.isb-sib.ch/announce/ or send an email to license@isb-sib.ch).
Name Last modified Size Description
Parent Directory - NIAGene.sql 2013-10-01 12:48 1.3K NIAGene.txt.gz 2004-10-20 07:03 8.6M affyGnf1m.sql 2013-10-01 12:48 1.3K affyGnf1m.txt.gz 2004-04-27 05:11 1.1M affyGnfU74A.sql 2013-10-01 12:48 1.0K affyGnfU74A.txt.gz 2004-03-03 05:24 3.2M affyGnfU74ADistance.sql 2013-10-01 12:48 409 affyGnfU74ADistance.txt.gz 2004-04-17 05:14 69M affyGnfU74B.sql 2013-10-01 12:48 1.0K affyGnfU74B.txt.gz 2004-03-03 05:27 1.1M affyGnfU74BDistance.sql 2013-10-01 12:48 409 affyGnfU74BDistance.txt.gz 2004-04-17 05:16 44M affyGnfU74C.sql 2013-10-01 12:48 1.0K affyGnfU74C.txt.gz 2004-03-03 05:27 653K affyGnfU74CDistance.sql 2013-10-01 12:48 409 affyGnfU74CDistance.txt.gz 2004-04-17 05:17 13M affyMOE430.sql 2013-10-01 12:48 1.3K affyMOE430.txt.gz 2004-04-29 05:19 3.9M affyU74.sql 2013-10-01 12:48 1.3K affyU74.txt.gz 2004-03-09 05:13 2.2M all_bacends.sql 2013-10-01 12:48 1.3K all_bacends.txt.gz 2004-09-28 13:56 397M all_est.sql 2013-10-01 12:48 1.3K all_est.txt.gz 2005-04-06 08:02 165M all_mrna.sql 2013-10-01 12:48 1.3K all_mrna.txt.gz 2005-04-27 07:04 11M all_sts_primer.sql 2013-10-01 12:48 1.2K all_sts_primer.txt.gz 2004-03-20 05:10 967K ancientRepeat.sql 2013-10-01 12:48 389 ancientRepeat.txt.gz 2003-11-23 16:16 532 author.sql 2013-10-01 12:48 392 author.txt.gz 2005-04-27 07:09 3.7M bacEndPairs.sql 2013-10-01 12:48 857 bacEndPairs.txt.gz 2004-02-12 05:04 4.9M cds.sql 2013-10-01 12:48 386 cds.txt.gz 2005-04-27 07:09 1.7M ceBlastTab.sql 2013-10-01 12:48 807 ceBlastTab.txt.gz 2004-04-17 05:12 617K cell.sql 2013-10-01 12:48 388 cell.txt.gz 2005-04-27 07:09 92K cgapAlias.sql 2013-10-01 12:48 367 cgapAlias.txt.gz 2004-04-17 05:11 906K cgapBiocDesc.sql 2013-10-01 12:48 356 cgapBiocDesc.txt.gz 2004-04-17 05:11 20K cgapBiocPathway.sql 2013-10-01 12:48 379 cgapBiocPathway.txt.gz 2004-04-17 05:11 15K chr1_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr1_blastzTightHg16.txt.gz 2003-11-23 17:02 2.4M chr1_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr1_blastzTightRn3.txt.gz 2003-11-23 17:02 16M chr1_chainHg16.sql 2013-10-01 12:48 851 chr1_chainHg16.txt.gz 2003-11-23 17:02 11M chr1_chainHg16Link.sql 2013-10-01 12:48 574 chr1_chainHg16Link.txt.gz 2003-11-23 17:03 44M chr1_chainRn3.sql 2013-10-01 12:48 849 chr1_chainRn3.txt.gz 2003-11-23 17:04 43M chr1_chainRn3Link.sql 2013-10-01 12:48 572 chr1_chainRn3Link.txt.gz 2003-11-23 17:07 170M chr1_est.sql 2013-10-01 12:48 1.3K chr1_est.txt.gz 2005-04-06 07:35 9.7M chr1_gap.sql 2013-10-01 12:48 701 chr1_gap.txt.gz 2003-11-25 07:38 77K chr1_gold.sql 2013-10-01 12:48 778 chr1_gold.txt.gz 2003-11-23 17:09 179K chr1_intronEst.sql 2013-10-01 12:48 1.3K chr1_intronEst.txt.gz 2005-04-06 07:35 4.7M chr1_mrna.sql 2013-10-01 12:48 1.3K chr1_mrna.txt.gz 2005-04-27 07:25 662K chr1_random_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr1_random_blastzTightHg16.txt.gz 2003-11-23 17:09 18K chr1_random_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr1_random_blastzTightRn3.txt.gz 2003-11-23 17:09 84K chr1_random_chainHg16.sql 2013-10-01 12:48 865 chr1_random_chainHg16.txt.gz 2003-11-23 17:09 45K chr1_random_chainHg16Link.sql 2013-10-01 12:48 588 chr1_random_chainHg16Link.txt.gz 2003-11-23 17:09 228K chr1_random_chainRn3.sql 2013-10-01 12:48 863 chr1_random_chainRn3.txt.gz 2003-11-23 17:09 1.6M chr1_random_chainRn3Link.sql 2013-10-01 12:48 586 chr1_random_chainRn3Link.txt.gz 2003-11-23 17:09 3.0M chr1_random_est.sql 2013-10-01 12:48 1.3K chr1_random_est.txt.gz 2005-01-19 08:42 29K chr1_random_gap.sql 2013-10-01 12:48 715 chr1_random_gap.txt.gz 2003-11-23 17:09 950 chr1_random_gold.sql 2013-10-01 12:48 792 chr1_random_gold.txt.gz 2003-11-23 17:09 1.7K chr1_random_intronEst.sql 2013-10-01 12:48 1.3K chr1_random_intronEst.txt.gz 2005-01-19 08:41 9.1K chr1_random_mrna.sql 2013-10-01 12:48 1.3K chr1_random_mrna.txt.gz 2005-03-09 08:45 1.5K chr1_random_rmsk.sql 2013-10-01 12:48 1.1K chr1_random_rmsk.txt.gz 2003-11-23 17:09 46K chr1_rmsk.sql 2013-10-01 12:48 1.0K chr1_rmsk.txt.gz 2003-11-23 17:09 8.7M chr2_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr2_blastzTightHg16.txt.gz 2003-11-23 17:09 2.5M chr2_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr2_blastzTightRn3.txt.gz 2003-11-23 17:09 15M chr2_chainHg16.sql 2013-10-01 12:48 851 chr2_chainHg16.txt.gz 2003-11-23 17:10 21M chr2_chainHg16Link.sql 2013-10-01 12:48 574 chr2_chainHg16Link.txt.gz 2003-11-23 17:11 90M chr2_chainRn3.sql 2013-10-01 12:48 849 chr2_chainRn3.txt.gz 2003-11-23 17:13 49M chr2_chainRn3Link.sql 2013-10-01 12:48 572 chr2_chainRn3Link.txt.gz 2003-11-23 17:17 206M chr2_est.sql 2013-10-01 12:48 1.3K chr2_est.txt.gz 2005-04-06 07:51 12M chr2_gap.sql 2013-10-01 12:48 701 chr2_gap.txt.gz 2003-11-25 07:38 3.3K chr2_gold.sql 2013-10-01 12:48 778 chr2_gold.txt.gz 2003-11-23 17:19 32K chr2_intronEst.sql 2013-10-01 12:48 1.3K chr2_intronEst.txt.gz 2005-03-30 10:04 6.3M chr2_mrna.sql 2013-10-01 12:48 1.3K chr2_mrna.txt.gz 2005-04-27 07:09 820K chr2_random_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr2_random_blastzTightHg16.txt.gz 2003-11-23 17:19 42K chr2_random_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr2_random_blastzTightRn3.txt.gz 2003-11-23 17:19 268K chr2_random_chainHg16.sql 2013-10-01 12:48 865 chr2_random_chainHg16.txt.gz 2003-11-23 17:19 37K chr2_random_chainHg16Link.sql 2013-10-01 12:48 588 chr2_random_chainHg16Link.txt.gz 2003-11-23 17:19 471K chr2_random_chainRn3.sql 2013-10-01 12:48 863 chr2_random_chainRn3.txt.gz 2003-11-23 17:19 652K chr2_random_chainRn3Link.sql 2013-10-01 12:48 586 chr2_random_chainRn3Link.txt.gz 2003-11-23 17:19 2.6M chr2_random_est.sql 2013-10-01 12:48 1.3K chr2_random_est.txt.gz 2005-04-06 07:43 128K chr2_random_gap.sql 2013-10-01 12:48 715 chr2_random_gap.txt.gz 2003-11-23 17:19 2.4K chr2_random_gold.sql 2013-10-01 12:48 792 chr2_random_gold.txt.gz 2003-11-23 17:19 3.8K chr2_random_intronEst.sql 2013-10-01 12:48 1.3K chr2_random_intronEst.txt.gz 2005-03-09 08:47 42K chr2_random_mrna.sql 2013-10-01 12:48 1.3K chr2_random_mrna.txt.gz 2005-04-27 07:04 11K chr2_random_rmsk.sql 2013-10-01 12:48 1.1K chr2_random_rmsk.txt.gz 2003-11-23 17:19 149K chr2_rmsk.sql 2013-10-01 12:48 1.0K chr2_rmsk.txt.gz 2003-11-23 17:19 8.1M chr3_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr3_blastzTightHg16.txt.gz 2003-11-23 17:19 1.9M chr3_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr3_blastzTightRn3.txt.gz 2003-11-23 17:19 13M chr3_chainHg16.sql 2013-10-01 12:48 851 chr3_chainHg16.txt.gz 2003-11-23 17:19 5.7M chr3_chainHg16Link.sql 2013-10-01 12:48 574 chr3_chainHg16Link.txt.gz 2003-11-23 17:20 30M chr3_chainRn3.sql 2013-10-01 12:48 849 chr3_chainRn3.txt.gz 2003-11-23 17:21 36M chr3_chainRn3Link.sql 2013-10-01 12:48 572 chr3_chainRn3Link.txt.gz 2003-11-23 17:23 138M chr3_est.sql 2013-10-01 12:48 1.3K chr3_est.txt.gz 2005-04-06 08:29 8.4M chr3_gap.sql 2013-10-01 12:48 701 chr3_gap.txt.gz 2003-11-25 07:38 56K chr3_gold.sql 2013-10-01 12:48 778 chr3_gold.txt.gz 2003-11-23 17:24 132K chr3_intronEst.sql 2013-10-01 12:48 1.3K chr3_intronEst.txt.gz 2005-03-09 08:54 4.5M chr3_mrna.sql 2013-10-01 12:48 1.3K chr3_mrna.txt.gz 2005-04-27 07:22 527K chr3_random_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr3_random_blastzTightHg16.txt.gz 2003-11-23 17:24 21K chr3_random_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr3_random_blastzTightRn3.txt.gz 2003-11-23 17:24 162K chr3_random_chainHg16.sql 2013-10-01 12:48 865 chr3_random_chainHg16.txt.gz 2003-11-23 17:24 26K chr3_random_chainHg16Link.sql 2013-10-01 12:48 588 chr3_random_chainHg16Link.txt.gz 2003-11-23 17:24 291K chr3_random_chainRn3.sql 2013-10-01 12:48 863 chr3_random_chainRn3.txt.gz 2003-11-23 17:24 447K chr3_random_chainRn3Link.sql 2013-10-01 12:48 586 chr3_random_chainRn3Link.txt.gz 2003-11-23 17:25 1.9M chr3_random_est.sql 2013-10-01 12:48 1.3K chr3_random_est.txt.gz 2005-03-09 08:47 74K chr3_random_gap.sql 2013-10-01 12:48 715 chr3_random_gap.txt.gz 2003-11-23 17:25 2.1K chr3_random_gold.sql 2013-10-01 12:48 792 chr3_random_gold.txt.gz 2003-11-23 17:25 3.5K chr3_random_intronEst.sql 2013-10-01 12:48 1.3K chr3_random_intronEst.txt.gz 2005-03-09 09:31 38K chr3_random_mrna.sql 2013-10-01 12:48 1.3K chr3_random_mrna.txt.gz 2005-04-20 09:26 5.7K chr3_random_rmsk.sql 2013-10-01 12:48 1.1K chr3_random_rmsk.txt.gz 2003-11-23 17:25 90K chr3_rmsk.sql 2013-10-01 12:48 1.0K chr3_rmsk.txt.gz 2003-11-23 17:25 6.8M chr4_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr4_blastzTightHg16.txt.gz 2003-11-23 17:25 2.0M chr4_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr4_blastzTightRn3.txt.gz 2003-11-23 17:25 12M chr4_chainHg16.sql 2013-10-01 12:48 851 chr4_chainHg16.txt.gz 2003-11-23 17:25 24M chr4_chainHg16Link.sql 2013-10-01 12:48 574 chr4_chainHg16Link.txt.gz 2003-11-23 17:26 64M chr4_chainRn3.sql 2013-10-01 12:48 849 chr4_chainRn3.txt.gz 2003-11-23 17:27 33M chr4_chainRn3Link.sql 2013-10-01 12:48 572 chr4_chainRn3Link.txt.gz 2003-11-23 17:30 128M chr4_est.sql 2013-10-01 12:48 1.3K chr4_est.txt.gz 2005-04-06 08:00 11M chr4_gap.sql 2013-10-01 12:48 701 chr4_gap.txt.gz 2003-11-25 07:38 3.8K chr4_gold.sql 2013-10-01 12:48 778 chr4_gold.txt.gz 2003-11-23 17:31 30K chr4_intronEst.sql 2013-10-01 12:48 1.3K chr4_intronEst.txt.gz 2005-04-06 07:35 6.1M chr4_mrna.sql 2013-10-01 12:48 1.3K chr4_mrna.txt.gz 2005-04-27 07:22 648K chr4_random_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr4_random_blastzTightHg16.txt.gz 2003-11-23 17:31 41K chr4_random_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr4_random_blastzTightRn3.txt.gz 2003-11-23 17:31 244K chr4_random_chainHg16.sql 2013-10-01 12:48 865 chr4_random_chainHg16.txt.gz 2003-11-23 17:31 41K chr4_random_chainHg16Link.sql 2013-10-01 12:48 588 chr4_random_chainHg16Link.txt.gz 2003-11-23 17:31 430K chr4_random_chainRn3.sql 2013-10-01 12:48 863 chr4_random_chainRn3.txt.gz 2003-11-23 17:31 856K chr4_random_chainRn3Link.sql 2013-10-01 12:48 586 chr4_random_chainRn3Link.txt.gz 2003-11-23 17:31 3.0M chr4_random_est.sql 2013-10-01 12:48 1.3K chr4_random_est.txt.gz 2005-04-06 07:36 298K chr4_random_gap.sql 2013-10-01 12:48 715 chr4_random_gap.txt.gz 2003-11-23 17:31 2.3K chr4_random_gold.sql 2013-10-01 12:48 792 chr4_random_gold.txt.gz 2003-11-23 17:31 3.5K chr4_random_intronEst.sql 2013-10-01 12:48 1.3K chr4_random_intronEst.txt.gz 2005-03-09 08:47 151K chr4_random_mrna.sql 2013-10-01 12:48 1.3K chr4_random_mrna.txt.gz 2005-04-20 09:02 21K chr4_random_rmsk.sql 2013-10-01 12:48 1.1K chr4_random_rmsk.txt.gz 2003-11-23 17:31 147K chr4_rmsk.sql 2013-10-01 12:48 1.0K chr4_rmsk.txt.gz 2003-11-23 17:31 7.1M chr5_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr5_blastzTightHg16.txt.gz 2003-11-23 17:31 1.6M chr5_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr5_blastzTightRn3.txt.gz 2003-11-23 17:31 12M chr5_chainHg16.sql 2013-10-01 12:48 851 chr5_chainHg16.txt.gz 2003-11-23 17:32 12M chr5_chainHg16Link.sql 2013-10-01 12:48 574 chr5_chainHg16Link.txt.gz 2003-11-23 17:32 37M chr5_chainRn3.sql 2013-10-01 12:48 849 chr5_chainRn3.txt.gz 2003-11-23 17:33 30M chr5_chainRn3Link.sql 2013-10-01 12:48 572 chr5_chainRn3Link.txt.gz 2003-11-23 17:35 131M chr5_est.sql 2013-10-01 12:48 1.3K chr5_est.txt.gz 2005-04-06 07:36 10M chr5_gap.sql 2013-10-01 12:48 701 chr5_gap.txt.gz 2003-11-25 07:38 51K chr5_gold.sql 2013-10-01 12:48 778 chr5_gold.txt.gz 2003-11-23 17:37 138K chr5_intronEst.sql 2013-10-01 12:48 1.3K chr5_intronEst.txt.gz 2005-04-06 07:34 5.6M chr5_mrna.sql 2013-10-01 12:48 1.3K chr5_mrna.txt.gz 2005-04-27 07:09 645K chr5_random_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr5_random_blastzTightHg16.txt.gz 2003-11-23 17:37 158K chr5_random_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr5_random_blastzTightRn3.txt.gz 2003-11-23 17:37 1.1M chr5_random_chainHg16.sql 2013-10-01 12:48 865 chr5_random_chainHg16.txt.gz 2003-11-23 17:37 744K chr5_random_chainHg16Link.sql 2013-10-01 12:48 588 chr5_random_chainHg16Link.txt.gz 2003-11-23 17:37 3.0M chr5_random_chainRn3.sql 2013-10-01 12:48 863 chr5_random_chainRn3.txt.gz 2003-11-23 17:37 2.4M chr5_random_chainRn3Link.sql 2013-10-01 12:48 586 chr5_random_chainRn3Link.txt.gz 2003-11-23 17:37 10M chr5_random_est.sql 2013-10-01 12:48 1.3K chr5_random_est.txt.gz 2005-04-06 08:03 904K chr5_random_gap.sql 2013-10-01 12:48 715 chr5_random_gap.txt.gz 2003-11-23 17:37 9.9K chr5_random_gold.sql 2013-10-01 12:48 792 chr5_random_gold.txt.gz 2003-11-23 17:37 15K chr5_random_intronEst.sql 2013-10-01 12:48 1.3K chr5_random_intronEst.txt.gz 2005-04-06 08:03 526K chr5_random_mrna.sql 2013-10-01 12:48 1.3K chr5_random_mrna.txt.gz 2005-04-20 09:24 64K chr5_random_rmsk.sql 2013-10-01 12:48 1.1K chr5_random_rmsk.txt.gz 2003-11-23 17:37 667K chr5_rmsk.sql 2013-10-01 12:48 1.0K chr5_rmsk.txt.gz 2003-11-23 17:37 6.7M chr6_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr6_blastzTightHg16.txt.gz 2003-11-23 17:37 1.8M chr6_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr6_blastzTightRn3.txt.gz 2003-11-23 17:37 12M chr6_chainHg16.sql 2013-10-01 12:48 851 chr6_chainHg16.txt.gz 2003-11-23 17:38 11M chr6_chainHg16Link.sql 2013-10-01 12:48 574 chr6_chainHg16Link.txt.gz 2003-11-23 17:38 43M chr6_chainRn3.sql 2013-10-01 12:48 849 chr6_chainRn3.txt.gz 2003-11-23 17:39 37M chr6_chainRn3Link.sql 2013-10-01 12:48 572 chr6_chainRn3Link.txt.gz 2003-11-23 17:42 138M chr6_est.sql 2013-10-01 12:48 1.3K chr6_est.txt.gz 2005-04-06 08:29 8.0M chr6_gap.sql 2013-10-01 12:48 701 chr6_gap.txt.gz 2003-11-25 07:38 55K chr6_gold.sql 2013-10-01 12:48 778 chr6_gold.txt.gz 2003-11-23 17:43 134K chr6_intronEst.sql 2013-10-01 12:48 1.3K chr6_intronEst.txt.gz 2005-03-30 09:29 4.2M chr6_mrna.sql 2013-10-01 12:48 1.3K chr6_mrna.txt.gz 2005-04-27 07:22 649K chr6_random_blastzTightHg16.sql 2013-10-01 12:48 1.3K chr6_random_blastzTightHg16.txt.gz 2003-11-23 17:43 6.0K chr6_random_blastzTightRn3.sql 2013-10-01 12:48 1.3K chr6_random_blastzTightRn3.txt.gz 2003-11-23 17:43 53K chr6_random_chainHg16.sql 2013-10-01 12:48 865 chr6_random_chainHg16.txt.gz 2003-11-23 17:43 3.8M chr6_random_chainHg16Link.sql 2013-10-01 12:48 588 chr6_random_chainHg16Link.txt.gz 2003-11-23 17:43 6.3M chr6_random_chainRn3.sql 2013-10-01 12:48 863 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