This directory contains reciprocal-best netted chains for mm39-susScr11.

 - mm39.susScr11.rbest.net.gz: mm39-referenced recip.best net to susScr11.
 - mm39.susScr11.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm39 to susScr11 through the recip.best net.

 - susScr11.mm39.rbest.net.gz: susScr11-referenced recip.best net.
 - susScr11.mm39.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm39.susScr11.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                         Last modified      Size  Description
      Parent Directory                                  -   
      susScr11.mm39.rbest.net.gz   2021-09-24 14:06  108M  
      susScr11.mm39.rbest.chain.gz 2021-09-24 14:07   53M  
      mm39.susScr11.rbest.chain.gz 2021-09-24 14:08   53M  
      mm39.susScr11.rbest.net.gz   2021-09-24 14:09   81M  
      md5sum.txt                   2021-09-24 14:09  248   
      axtRBestNet/                 2021-10-13 18:33    -