This directory contains reciprocal-best netted chains for mm10-orcOrc1.

 - mm10.orcOrc1.rbest.net.gz: mm10-referenced recip.best net to orcOrc1.
 - mm10.orcOrc1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to orcOrc1 through the recip.best net.

 - orcOrc1.mm10.rbest.net.gz: orcOrc1-referenced recip.best net.
 - orcOrc1.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.orcOrc1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
Parent Directory - axtRBestNet/ 2017-06-16 00:14 - md5sum.txt 2017-06-15 19:43 244 mm10.orcOrc1.rbest.chain.gz 2017-06-15 19:42 59M mm10.orcOrc1.rbest.net.gz 2017-06-15 19:43 92M orcOrc1.mm10.rbest.chain.gz 2017-06-15 19:41 59M orcOrc1.mm10.rbest.net.gz 2017-06-15 19:40 125M