The data files ("UCSC Chain Files") in this directory are property of The
Regents of the University of California, and made available free for
non-commercial use by Independent Researchers and Nonprofit Organizations. Any
other use of UCSC Chain Files requires a commercial license, for which users
should contact genomebrowser@ucsc.edu. As used herein, "Independent
Researcher" means an individual who is autonomous with respect to the
research activities for which he or she uses the UCSC Chain Files (note: such
use does not extend to any use of the UCSC Chain Files at the direction and/or
for the benefit of a for-profit organization); and "Nonprofit
Organization" means a university or other institution of higher education,
or a not-for-profit organization officially recognized or qualified under the
laws of the country in which it is organized or located, or any nonprofit
scientific or educational organization qualified under a federal, state or local
jurisdiction's nonprofit organization statute. Downloading or using UCSC Chain
Files indicates your acceptance of the End User License Agreement (EULA) posted
at "https://genome.ucsc.edu/license/EULA.pdf"; redistribution of UCSC Chain
Files by you must include this README file with these license restrictions, in
the same archive or directory with the chain files.

This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.soe.ucsc.edu/admin/exe/

The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
mm10ToHg19.over.chain.gz file contains the liftOver data needed to
convert mm10 (Mouse GRCm38) coordinates to hg19 (Human GRCh37).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.

To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.soe.ucsc.edu (user: anonymous),
then cd to goldenPath/mm10/liftOver.  To download multiple files,
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
-------------------------------------------------------
Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/mm10/liftOver/ .
For a single file, e.g. mm10ToHg19.over.chain.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/mm10/liftOver/mm10ToHg19.over.chain.gz .
    (Hg19 is merely an example here, not necessarily existing.)

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/mm10/liftOver/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/mm10/liftOver/mm10ToHg19.over.chain.gz'  
        -O mm10ToHg19.over.chain.gz

To uncompress the *.chain.gz files:
    gunzip <file>.chain.gz 
The liftOver utility can read the files in their .gz format,
it is not necessary to uncompress them to use with the liftOver command.

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This file last updated: 2012-02-09 - 09 February 2012
------------------------------------------------------------------
      Name                                             Last modified      Size  Description
Parent Directory - mm10ToHg19.over.chain.gz 2012-03-08 11:57 74M mm10ToRn4.over.chain.gz 2012-03-08 14:22 52M mm10ToNomLeu1.over.chain.gz 2012-03-08 22:47 66M mm10ToGorGor3.over.chain.gz 2012-03-08 23:14 65M mm10ToPonAbe2.over.chain.gz 2012-03-09 08:43 67M mm10ToCalJac3.over.chain.gz 2012-03-09 19:02 63M mm10ToSaiBol1.over.chain.gz 2012-03-09 19:20 63M mm10ToPapHam1.over.chain.gz 2012-03-10 03:12 67M mm10ToPanTro4.over.chain.gz 2012-03-10 03:36 66M mm10ToTarSyr1.over.chain.gz 2012-03-12 05:15 53M mm10ToPanTro3.over.chain.gz 2012-03-12 09:06 67M mm10ToMicMur1.over.chain.gz 2012-03-13 22:10 55M mm10ToOtoGar3.over.chain.gz 2012-03-13 22:13 59M mm10ToHetGla1.over.chain.gz 2012-03-16 02:31 64M mm10ToDipOrd1.over.chain.gz 2012-03-16 04:46 43M mm10ToSpeTri2.over.chain.gz 2012-03-16 05:26 67M mm10ToEquCab2.over.chain.gz 2012-03-16 16:38 66M mm10ToCavPor3.over.chain.gz 2012-03-17 10:59 58M mm10ToSusScr2.over.chain.gz 2012-03-17 12:53 47M mm10ToOryCun2.over.chain.gz 2012-03-17 15:22 51M mm10ToTurTru1.over.chain.gz 2012-03-17 16:30 58M mm10ToVicPac1.over.chain.gz 2012-03-17 20:22 47M mm10ToTupBel1.over.chain.gz 2012-03-17 20:42 44M mm10ToLoxAfr3.over.chain.gz 2012-03-20 15:38 51M mm10ToPteVam1.over.chain.gz 2012-03-20 15:44 56M mm10ToCanFam3.over.chain.gz 2012-03-20 16:40 58M mm10ToAilMel1.over.chain.gz 2012-03-20 17:04 62M mm10ToFelCat4.over.chain.gz 2012-03-20 18:34 49M mm10ToOviAri1.over.chain.gz 2012-03-22 06:52 32M mm10ToMyoLuc2.over.chain.gz 2012-03-22 09:03 49M mm10ToChoHof1.over.chain.gz 2012-03-22 10:16 41M mm10ToBosTau7.over.chain.gz 2012-03-22 10:45 53M mm10ToDasNov2.over.chain.gz 2012-03-23 12:02 39M mm10ToProCap1.over.chain.gz 2012-03-23 15:53 35M mm10ToOchPri2.over.chain.gz 2012-03-24 06:12 33M mm10ToSorAra1.over.chain.gz 2012-03-24 06:58 23M mm10ToMacEug2.over.chain.gz 2012-03-24 11:54 12M mm10ToEriEur1.over.chain.gz 2012-03-24 13:36 25M mm10ToEchTel1.over.chain.gz 2012-03-24 14:15 27M mm10ToRn5.over.chain.gz 2012-03-26 12:53 64M mm10ToMelUnd1.over.chain.gz 2012-03-30 04:25 7.1M mm10ToSarHar1.over.chain.gz 2012-03-30 10:30 18M mm10ToChrPic1.over.chain.gz 2012-03-30 11:59 9.5M mm10ToOrnAna1.over.chain.gz 2012-03-30 12:18 11M mm10ToTriMan1.over.chain.gz 2012-03-30 12:53 53M mm10ToMonDom5.over.chain.gz 2012-03-30 19:24 20M mm10ToTetNig2.over.chain.gz 2012-04-02 22:47 3.7M mm10ToGasAcu1.over.chain.gz 2012-04-03 10:36 4.3M mm10ToGalGal4.over.chain.gz 2012-04-03 10:43 7.1M mm10ToDanRer7.over.chain.gz 2012-04-03 10:51 5.8M mm10ToOreNil1.over.chain.gz 2012-04-03 10:54 4.2M mm10ToTaeGut1.over.chain.gz 2012-04-03 11:04 7.2M mm10ToAnoCar2.over.chain.gz 2012-04-03 11:38 6.8M mm10ToMelGal1.over.chain.gz 2012-04-03 11:53 7.0M mm10ToXenTro3.over.chain.gz 2012-04-03 12:21 6.6M mm10ToFr3.over.chain.gz 2012-04-03 13:13 3.8M mm10ToOryLat2.over.chain.gz 2012-04-03 15:15 4.2M mm10ToLatCha1.over.chain.gz 2012-04-03 15:49 5.8M mm10ToPetMar1.over.chain.gz 2012-04-03 15:51 2.8M mm10ToGadMor1.over.chain.gz 2012-04-03 16:50 4.4M mm10ToOreNil2.over.chain.gz 2012-04-11 10:56 4.2M mm10ToFelCat5.over.chain.gz 2012-04-14 03:30 59M mm10ToSusScr3.over.chain.gz 2012-04-14 04:18 52M mm10ToDasNov3.over.chain.gz 2012-04-14 04:58 52M mm10ToNomLeu2.over.chain.gz 2012-04-14 21:16 65M mm10ToTurTru2.over.chain.gz 2012-04-14 21:26 62M mm10ToHetGla2.over.chain.gz 2012-04-14 22:13 65M mm10ToMm9.over.chain.gz 2012-04-30 21:52 940K mm10ToBosTau6.over.chain.gz 2012-06-19 12:57 53M mm10ToRheMac3.over.chain.gz 2012-07-11 04:40 65M mm10ToGeoFor1.over.chain.gz 2012-07-29 14:49 7.1M mm10ToPetMar2.over.chain.gz 2012-10-19 19:12 2.6M mm10ToCerSim1.over.chain.gz 2012-10-24 06:10 68M mm10ToSorAra2.over.chain.gz 2013-06-13 01:47 28M mm10ToEchTel2.over.chain.gz 2013-06-13 05:34 30M mm10ToVicPac2.over.chain.gz 2013-06-20 19:44 59M mm10ToMicOch1.over.chain.gz 2014-05-16 20:13 82M mm10ToRheMac2.over.chain.gz 2014-05-23 17:43 65M mm10ToBosTau8.over.chain.gz 2014-10-16 12:15 53M mm10ToOviAri3.over.chain.gz 2015-01-08 12:26 33M mm10ToTarSyr2.over.chain.gz 2015-03-27 14:59 64M mm10ToHg38.over.chain.gz 2015-04-10 12:46 67M mm10ToDanRer10.over.chain.gz 2015-09-11 16:28 6.3M mm10ToRheMac8.over.chain.gz 2016-02-10 12:51 66M mm10ToRn6.over.chain.gz 2016-04-07 16:17 74M mm10ToGalGal5.over.chain.gz 2016-04-20 12:33 7.5M mm10ToGalVar1.over.chain.gz 2016-04-26 14:27 70M mm10ToPelSin1.over.chain.gz 2016-05-10 13:22 8.6M mm10ToPanPan2.over.chain.gz 2016-05-24 18:07 67M mm10ToPanTro5.over.chain.gz 2016-08-04 02:48 67M mm10ToMelGal5.over.chain.gz 2017-01-19 12:24 7.5M mm10ToMacNem1.over.chain.gz 2017-02-28 14:40 67M mm10ToColAng1.over.chain.gz 2017-02-28 14:52 66M mm10ToMicMur3.over.chain.gz 2017-03-05 02:29 66M mm10ToTupChi1.over.chain.gz 2017-03-09 16:18 51M mm10ToManPen1.over.chain.gz 2017-03-16 02:11 56M mm10ToAquChr2.over.chain.gz 2017-03-16 18:37 7.7M mm10ToBisBis1.over.chain.gz 2017-03-17 20:24 53M mm10ToXenLae2.over.chain.gz 2017-03-30 09:39 6.3M mm10ToXenTro9.over.chain.gz 2017-03-30 10:16 6.8M mm10ToChrPic2.over.chain.gz 2017-04-06 13:26 7.8M mm10ToCriGriChoV1.over.chain.gz 2017-04-13 21:12 83M mm10ToCriGri1.over.chain.gz 2017-05-12 12:10 85M mm10ToDanRer11.over.chain.gz 2017-06-12 17:04 3.8M mm10ToOrcOrc1.over.chain.gz 2017-06-15 13:33 61M mm10ToPapAnu3.over.chain.gz 2017-06-22 06:05 66M mm10ToOreNil3.over.chain.gz 2017-07-31 13:58 4.3M mm10ToSusScr11.over.chain.gz 2017-07-31 17:20 55M mm10ToGorGor5.over.chain.gz 2017-08-04 11:58 68M mm10ToManLeu1.over.chain.gz 2017-09-25 11:03 66M mm10ToNeoSch1.over.chain.gz 2017-09-25 19:26 62M mm10ToAotNan1.over.chain.gz 2017-09-25 19:32 65M mm10ToCerAty1.over.chain.gz 2017-09-27 14:19 67M mm10ToProCoq1.over.chain.gz 2017-09-28 21:26 64M mm10ToCebCap1.over.chain.gz 2017-10-03 17:09 65M mm10ToEulFla1.over.chain.gz 2017-10-04 17:20 66M mm10ToEulMac1.over.chain.gz 2017-10-05 11:20 67M mm10ToDipOrd2.over.chain.gz 2018-01-01 18:41 50M mm10ToFukDam1.over.chain.gz 2018-01-01 19:16 61M mm10ToCriGriChoV2.over.chain.gz 2018-01-05 16:22 85M mm10ToCavApe1.over.chain.gz 2018-01-08 22:23 34M mm10ToPapAnu4.over.chain.gz 2018-01-09 02:02 66M mm10ToFicAlb1.over.chain.gz 2018-01-09 12:30 7.3M mm10ToPetMar3.over.chain.gz 2018-01-25 11:15 3.4M mm10ToThaSir1.over.chain.gz 2018-03-13 12:17 6.6M mm10ToFelCat9.over.chain.gz 2018-03-14 15:59 59M mm10ToCasCan1.over.chain.gz 2018-03-20 00:44 73M mm10ToPanTro6.over.chain.gz 2018-03-25 02:38 67M mm10ToPonAbe3.over.chain.gz 2018-03-26 17:33 67M mm10ToOviAri4.over.chain.gz 2018-04-25 14:01 52M mm10ToEquCab3.over.chain.gz 2018-05-25 19:04 67M mm10ToBalAcu1.over.chain.gz 2018-06-13 11:37 63M mm10ToGalGal6.over.chain.gz 2018-10-12 11:02 7.4M mm10ToBosTau9.over.chain.gz 2018-11-08 13:29 53M mm10ToRheMac10.over.chain.gz 2019-07-03 16:18 67M mm10ToGorGor6.over.chain.gz 2019-11-20 19:43 67M mm10ToCanFam4.over.chain.gz 2020-04-02 18:15 58M mm10ToEnhLutNer1.over.chain.gz 2020-04-15 23:47 58M mm10ToGCA_901343595v1_MONAX5.over.chain.gz 2020-05-29 18:26 69M mm10ToPanPan3.over.chain.gz 2020-06-15 15:55 67M mm10ToCanFam5.over.chain.gz 2020-07-30 06:22 58M mm10ToMm39.over.chain.gz 2020-07-30 14:50 24K mm10ToCalJac4.over.chain.gz 2020-09-03 18:32 64M mm10ToRn7.over.chain.gz 2021-02-15 14:38 73M mm10ToXenTro10.over.chain.gz 2021-02-23 02:29 7.6M mm10ToGCF_002742125.1.over.chain.gz 2021-04-12 16:42 53M mm10ToGCA_001624865.1_SPRET_EiJ_v1.over.chain.gz 2021-04-12 18:17 26M mm10ToGCF_900094665.1.over.chain.gz 2021-04-26 16:35 36M mm10ToCanFam6.over.chain.gz 2021-05-17 16:49 59M mm10ToGCF_900095145.1.over.chain.gz 2021-09-09 12:40 51M mm10ToGCA_001624445.1.over.chain.gz 2021-09-14 18:19 19M mm10ToGCA_001624185.1.over.chain.gz 2021-09-14 18:34 11M mm10ToGCF_000349665.1.over.chain.gz 2021-10-20 00:07 84M mm10ToGCA_001624535.1.over.chain.gz 2022-04-22 08:11 12M md5sum.txt 2022-04-22 12:21 9.8K