This directory contains reciprocal-best netted chains for manPen1-hg38.

 - manPen1.hg38.rbest.net.gz: manPen1-referenced recip.best net to hg38.
 - manPen1.hg38.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from manPen1 to hg38 through the recip.best net.

 - hg38.manPen1.rbest.net.gz: hg38-referenced recip.best net.
 - hg38.manPen1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/manPen1.hg38.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
Parent Directory - axtRBestNet/ 2017-04-20 16:32 - md5sum.txt 2017-03-16 08:05 244 manPen1.hg38.rbest.net.gz 2017-03-16 08:05 111M manPen1.hg38.rbest.chain.gz 2017-03-16 08:04 73M hg38.manPen1.rbest.chain.gz 2017-03-16 08:02 73M hg38.manPen1.rbest.net.gz 2017-03-16 08:01 144M