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  Golden Path Statistics
 

Statistics are available for these archived assemblies of the human genome:



  NCBI Build 31, Nov. 2002 Assembly (hg13)
 

                                                                                                                        |-----Ordered------|  |------Random------|
   Chr       Base    N50 Seq      N50 Seq   N50 Clone    N50 Clone  Seq Contig  Seq Contig  Clone Contig  Clone Contig  Map Contig   N50 Map  Map Contig   N50 Map
  Name      Count     Contig  Contig Scaf      Contig  Contig Scaf       Count  Scaf Count         Count    Scaf Count       Count    Contig       Count    Contig
 -----------------------------------------------------------------------------------------------------------------------------------------------------------------
     1  221710493    2773919      3669496     3669496      3669496         835         199           111           111         107   3669496           3    163129
     2  237620056    7543490      8978318     8978318      8978318         241         105            67            67          65   8978318           1    160669
     3  194758973    2089409      3769463     3919344      3919344         979         236           107           107         103   3919344           3    162110
     4  188355915    4528632      6052153     6497612      6497612         525         120            57            57          51   6497612           5    150736
     5  177639259    2258351      5976340     5976340      5976340         721         112            58            58          57   5976340           -         -
     6  175762617   26676743     26676743    26676743     26676743          17          17            17            17          14  26676743           2   4731698
     7  153794793   47427839     47427839    47427839     47427839          14          14            14            14          13  47427839           -         -
     8  142741362    3106153      5712752     5712752      5712752         519         200            52            52          48   5712752           3    140608
     9  116996962    9858781     10588745    10588745     10588745         217          80            53            53          51  10588745           1     36248
    10  131083577    8338970     13177770    13177770     13177770         183          93            29            29          27  13177770           1    141075
    11  133189279    6630089     13944112    13944112     13944112         547         284            43            43          35  13944112           7    175031
    12  129282703    1786829      3784899     3784899      3784899         873         238            74            74          67   3784899           6    165593
    13   95228136   25410838     25410838    25410838     25410838           7           7             7             7           6  25410838           -         -
    14   88181384   68224640     68224640    68224640     68224640          16           7             7             7           5  68224640           1     64039
    15   83561080    1778411      5391482     5391482      5391482         249          96            33            33          28   5391482           4    183417
    16   80845246    1790099      6817844     6817844      6817844         476         147            37            37          33   6817844           3    164566
    17   80678948    1037168      4446157     4446157      4446157         601         161            49            49          40   4446157           8    142326
    18   74606405    3529444      8730176     8730176      8730176         143          14            14            14          13   8730176           -         -
    19   56428652    4255343      7189553     7199523      7199523         192          83            17            17          14   7199523           2    159169
    20   59424940   24982240     24982240    24982240     24982240           7           7             7             7           6  24982240           -         -
    21   33917895   28598685     28598685    28598685     28598685           5           5             5             5           4  28598685           -         -
    22   33821705   23083944     23083944    23083944     23083944          11          11            11            11          10  23083944           -         -
     X  147239456    4040025      4438570     4438570      4438570         416         146            69            69          68   4438570           -         -
     Y   22660226    6380532      6380532     6380532      6380532           6           6             6             6           5   6380532           -         -
    Un    1361046      16838        38475      163565       163565         140          83             9             9           9    163565           -         -
 -----------------------------------------------------------------------------------------------------------------------------------------------------------------
Entire
Genome 2860891108    4731698      8354262     8464403      8464403        7940        2471           953           953         870   8479898          59   4265243



  NCBI Build 30, Jun. 2002 Assembly (hg12)
 

                                                                                                                        |-----Ordered------|  |------Random------|
   Chr       Base    N50 Seq      N50 Seq   N50 Clone    N50 Clone  Seq Contig  Seq Contig  Clone Contig  Clone Contig  Map Contig   N50 Map  Map Contig   N50 Map
  Name      Count     Contig  Contig Scaf      Contig  Contig Scaf       Count  Scaf Count         Count    Scaf Count       Count    Contig       Count    Contig
 -----------------------------------------------------------------------------------------------------------------------------------------------------------------
     1  220882734    1089647      1089647     3132686      3132686        1457        1444           141           141         140   3132686           -         -
     2  236271569    3253404      3253404     8216582      8216582         688         688            81            81          79   8216582           1    160669
     3  189498636     488687       488687     1996788      1996788        2962        2923           167           167         166   1996788           -         -
     4  187907798    1663604      1663604     5239069      5239069        1183        1150            79            79          76   5239069           2    198084
     5  176710500     966172       966172     4409808      4409808        1688        1684            59            59          58   4409808           -         -
     6  174835484   19894959     19894959    19894959     19894959          34          34            34            34          19  19894959          14    940052
     7  153794993   47428039     47428039    47428039     47428039          14          14            14            14          13  47428039           -         -
     8  139587370     879173       879173     2789825      2789825        1236        1169            98            98          94   2825984           3    135070
     9  115391738    7631606      7631606     9717621      9717621         384         374            56            56          54   9717621           1    155782
    10  130723150    5712478      5712478     8042166      8042166         273         273            37            37          36   8042166           -         -
    11  130556334    1953326      1953326     7748307      7748307        1103        1060            65            65          61   7748307           3    192493
    12  126351326     512325       512325     1549192      1549192        1838        1787           150           150         148   1549192           1    179554
    13   95206004   12392129     12392129    25411115     25411115           9           9             8             8           7  25411115           -         -
    14   87163708   31059910     31059910    46538979     46538979          16          16             4             4           3  46538979           -         -
    15   80199929     666030       666030     3896929      3896929         679         651            49            49          45   3896929           3    183417
    16   77965664     851624       851624     2663007      2663007        1053        1028            53            53          50   3364278           2    187727
    17   76407261     550837       550837     2659795      2659795        1323        1263            72            72          67   2659795           4    167426
    18   73040609     629354       629354     3477175      3477175        1170        1152            38            38          37   3477175           -         -
    19   56555722    1309143      1309143     3396229      3396229         552         526            42            42          38   3396229           3    172525
    20   59422997   24982240     24982240    24982240     24982240           7           7             7             7           6  24982240           -         -
    21   33834763   28515771     28515771    28515771     28515771           5           5             5             5           4  28515771           -         -
    22   33821705   23083944     23083944    23083944     23083944          11          11            11            11          10  23083944           -         -
     X  144796354    2408944      2408944     3020093      3020093         759         734           112           112         104   3020093           7    169128
     Y   22668225    6380532      6380532     6380532      6380532           6           6             6             6           5   6380532           -         -
    Un    1079454      12592        29295      155992       155992         131          85             7             7           -         -           7    155992
 -----------------------------------------------------------------------------------------------------------------------------------------------------------------
Entire
Genome 2824674027    1981584      1981584     5484103      5484103       18581       18093          1395          1395        1320   5556498          51    459211


  NCBI Build 29, Apr. 2002 Assembly (hg11)
 

                                                                                                                       |-----Ordered------|  |------Random------|
  Chr       Base    N50 Seq      N50 Seq   N50 Clone    N50 Clone  Seq Contig  Seq Contig  Clone Contig  Clone Contig  Map Contig   N50 Map  Map Contig   N50 Map
 Name      Count     Contig  Contig Scaf      Contig  Contig Scaf       Count  Scaf Count         Count    Scaf Count       Count    Contig       Count    Contig
 ----------------------------------------------------------------------------------------------------------------------------------------------------------------
    1  223534746     760113      1045942     3126425      3505160        2069        1479           143           137         127   3505160          10    188775
    2  241806097    1880482      2008374     5082063      5343797        1301        1301           137           130         109   5343797          21    175669
    3  193509105     235312       287992     1442858      1476474        3974        3974           262           256         217   1500407          39    167167
    4  192315748     845622       967874     2848683      2848683        1713        1713           152           147         122   2986072          25    176379
    5  184254615     655472       756977     4571294      4571294        1817        1817           127           127         105   5368618          22    160826
    6  180373968   16517773     16517773    16745462     16745462        1231         566            96            96          72  16745462          24    182822
    7  158170021    7172694      7398427     9597171      9597171         298         298            57            54          40   9597171          14    182896
    8  143227393     613426       724645     2040902      2040902        1516        1516           131           124         104   2089755          20    173269
    9  113357097    3670829      5062573     7244292      7885514         267         267            55            53          48   7885514           5    154232
   10  133303594    1746931      2588383     4252770      4252770         907         681            74            72          66   4252770           6    187667
   11  130434058    1299368      1410222     5179405      5179405        1583        1583           102           102          75   5179405          27    155278
   12  126201961     437582       474907     1573378      1667713        2183        1763           141           135         126   1690744           9    187321
   13   97611767   10522862     10522862    19086841     19086841         222         132            19            19          13  19086841           6    401435
   14   88577446   17544745     17546657    23908527     23908527         142         100            13            13          10  23908527           3    330686
   15   82257513     506267       667746     3926007      3926007        1362        1072            66            66          48   3926007          18    159299
   16   78972894     573568       900791     3334558      3434162        1331        1012            59            58          49   3434162           9    161855
   17   79094973     350741       462187     2906933      3139804        1606        1249            72            68          49   3139804          19    192983
   18   78262379     350452       442892     1572153      1649768        1929        1570            93            90          67   1671366          23    164547
   19   56638441     630038      1029003     1501725      1902620         626         497            68            61          57   1902620           4    171946
   20   59387171   24982240     24982240    24982240     24982240           6           6             6             6           6  24982240           -         -
   21   33829444   28512199     28512199    28512199     28512199           5           5             5             5           5  28512199           -         -
   22   33821705   23083944     23083944    23083944     23083944          11          11            11            11          11  23083944           -         -
    X  143887792    1690491      1690491     2336584      2682800        1188         948           143           139         125   2682800          14    179633
    Y   22668225    6380532      6380532     6380532      6380532           6           6             6             6           6   6380532           -         -
    M          0          0            0           0            0           0           0             0             0           -         -           -         -
   Un    9036748      26525        57708      166860       166860         809         571            69            69           -         -          69    166860
 ----------------------------------------------------------------------------------------------------------------------------------------------------------------
  Tot 2884534901    1234199      1384563     4150941      4407972       31798       24137          2107          2044        1657   4571294         387    173037



  NCBI Build 28, Dec. 2001 Assembly (hg10)
 

   Chr       Base    N50 Seq      N50 Seq   N50 Clone    N50 Clone  Seq Contig  Seq Contig  Clone Contig  Clone Contig  Map Contig   N50 Map  Map Contig   N50 Map
  Name      Count     Contig  Contig Scaf      Contig  Contig Scaf       Count  Scaf Count         Count    Scaf Count       Count    Contig       Count    Contig
 -----------------------------------------------------------------------------------------------------------------------------------------------------------------
     1  230828149     445974       456561     1807730      1807730        3241        2942           229           229         207   1815979          21    169149
     2  230302280     575173       641112     1630459      1630459        3658        3355           255           255         229   1651416          25    172188
     3  191490475     152678       164372     1042653      1042653        7122        6465           316           316         273   1074042          42    170191
     4  175359334     202693       216874      852549       852549        5132        4650           333           333         311    860056          21    176379
     5  171754684     257101       286003     1198023      1198023        4271        3732           247           247         232   1221945          14    145436
     6  175014737    6326156      6326156     7089305      7089305         602         546            64            64          50   7089305          13    200859
     7  159243782    1920500      1920500     4243828      4243828         958         892            86            86          74   4243828          11    193277
     8  136788776     313937       333261     1174774      1174774        2736        2556           193           193         174   1180259          18    179323
     9  115607426    1467717      1492313     4168174      4168174         747         661            80            80          75   4168174           4    154685
    10  134428202     955363       974616     2171663      2171663        1293        1181           136           136         124   2230810          11    187667
    11  137516857     586073       598140     5816908      5816908        3081        2869           119           119          88   5816908          30    160163
    12  130789200     356726       370796     1601064      1601064        2556        2347           145           145         136   1601064           8    175998
    13   98864125    4987954      4987954     7195537      7195537         365         303            30            30          21   7195537           8    229000
    14   89004877    4737049      4737049     9545717      9545717         164         142            23            23          20   9545717           2    368172
    15   79794613     281408       308812     1655278      1655278        1542        1386            91            91          74   1655278          16    157534
    16   78910285     248620       294564     1424796      1424796        2168        1891            90            90          77   1483959          12    183481
    17   80487962     242767       250989     1737082      1737082        2137        1976           100           100          79   2063182          20    181338
    18   78335116     201420       211166     1277814      1277814        2453        2266           108           108          85   1286374          22    166782
    19   58572947     464215       525213     1285509      1285509         661         577            98            98          94   1285509           3    172549
    20   60448505   23595477     23595477    23595477     23595477          32          18            14            14           8  23595477           5    988176
    21   33978248   28511026     28511026    28511026     28511026          34          32             6             6           4  28511026           1    152777
    22   34574777   23083944     23083944    23083944     23083944          42          38            17            17          10  23083944           6    164323
     X  142842342    1149060      1176733     1827193      1827193        1563        1387           162           162         148   1840534          13    169318
     Y   22851348    6380532      6380532     6380532      6380532          62          62             8             8           5   6380532           2    155017
    Un    5285279      23630        25223      162209       162209         497         480            42            42           -         -          42    162209
 -----------------------------------------------------------------------------------------------------------------------------------------------------------------
Entire
Genome 2853074326     575265       613216     1976304      1976304       47117       42754          2992          2992        2598   2036162         370    172188