This directory contains the August 6, 2001 GenBank freeze ordered and oriented according to the corresponding fingerprint map and genome layout from Wash. U., taking into account overlap between fragments and bridging mRNA, EST, plasmid and BAC end pairs. Chromosomes 20, 21 and 22 and Y are the finished versions as obtained from NCBI. This directory includes the following files: contigFa.zip - The working draft sequence one file per fingerprint contig (clone layout) in Fasta format. Unpacks with one directory for each chromosome and one subdirectory for each fingerprint contig. contigFaMasked.zip - RepeatMasked version of contigFa.zip (with N's in place of repeating elements.) contigAgp.zip - Description of how the working draft was generated from fragments at a contig layout level. contigOut.zip - RepeatMasker .out file for contigs. chromFa.zip - Similar to contigFa.zip, but it unpacks to one file per chromosome. chromFaMasked.zip - RepeatMasked version of chromFa.zip chromAgp.zip - Similar to contigAGP.zip, but it unpacks to one file per chromosome. chromOut.zip - RepeatMasker .out file for chromosomes. database.zip - The genome browser database as tab-delimited files and associated MySQL table-creation tiles. liftAll.zip - A file that contains the offsets of contigs within chromosomes.
Name Last modified Size Description
Parent Directory - chromAgp.zip 2001-10-18 12:19 3.4M chromFa.zip 2001-10-05 08:44 848M chromFaMasked.zip 2001-10-05 08:56 533M chromOut.zip 2001-11-28 13:38 129M contigAgp.zip 2001-10-05 08:35 3.5M contigFa.zip 2001-10-05 08:51 846M contigFaMasked.zip 2001-10-05 09:01 531M contigOut.zip 2001-10-05 08:36 130M database.zip 2002-08-11 19:59 1.3G liftAll.zip 2001-10-05 08:36 9.1K