3217 229 96 2 chrY 95 948 -51512636 + L1PA12 LINE L1 656 1588 -5993 2623 192 25 17 chrY 948 1582 -51512002 + L1PA12 LINE L1 2405 3043 -4531 1206 81 46 12 chrY 1802 2007 -51511577 + AluY SINE Alu 111 311 0 263 235 67 0 chrY 2039 2158 -51511426 - L1M4 LINE L1 -1720 4426 4300 1694 199 14 0 chrY 2241 2538 -51511046 + AluJb SINE Alu 1 301 -11 2002 149 0 7 chrY 2581 2882 -51510702 + AluSq SINE Alu 1 299 -14 250 319 90 90 chrY 3552 3831 -51509753 + L2 LINE L2 3029 3307 -6 186 264 75 0 chrY 3901 3954 -51509630 + MIR SINE MIR 85 141 -121 325 269 19 10 chrY 4342 4446 -51509138 + MLT1D LTR MaLR 4 108 -397 2152 102 0 33 chrY 4965 5101 -51508483 + AluSx SINE Alu 1 140 -172 2141 121 24 0 chrY 5101 5391 -51508193 + AluSx SINE Alu 1 297 -15 2152 102 0 33 chrY 5391 5559 -51508025 + AluSx SINE Alu 140 295 -17 1690 189 3 10 chrY 5592 5883 -51507701 + AluJo SINE Alu 1 289 -23 22 0 0 0 chrY 5888 5910 -51507674 + AT_rich Low_complexity Low_complexity 1 22 0 2085 118 3 0 chrY 6085 6391 -51507193 - AluSx SINE Alu 0 312 1 2498 72 0 10 chrY 7331 7637 -51505947 + AluY SINE Alu 1 303 -8 2317 97 3 0 chrY 7957 8255 -51505329 - AluSq SINE Alu -14 299 1 2255 109 30 0 chrY 8672 8974 -51504610 - AluSx SINE Alu -1 311 1 2118 110 20 17 chrY 9313 9614 -51503970 - AluSx SINE Alu -10 302 1 973 124 11 10 chrY 9803 10093 -51503491 - THE1C LTR MaLR 0 375 1 1914 161 0 3 chrY 10350 10649 -51502935 + AluJo SINE Alu 3 300 -12 2339 102 0 0 chrY 10653 10948 -51502636 - AluY SINE Alu -16 295 1 21 0 0 0 chrY 10951 10972 -51502612 + AT_rich Low_complexity Low_complexity 1 21 0 1575 115 0 9 chrY 11219 11436 -51502148 + AluSg/x SINE Alu 95 309 0 2405 79 7 3 chrY 11784 12089 -51501495 + AluSx SINE Alu 1 306 -6 354 80 0 0 chrY 12366 12416 -51501168 - MADE1 DNA Mariner -1 79 30 301 121 0 121 chrY 12412 12478 -51501106 + AluJo SINE Alu 94 151 -151 * 294 77 19 58 chrY 12479 12531 -51501053 - AluJo SINE Alu -160 142 93 * 383 41 0 0 chrY 12526 12575 -51501009 + MADE1 DNA Mariner 30 78 -2 376 229 32 13 chrY 12917 13285 -51500299 + CT-rich Low_complexity Low_complexity 1 375 0 599 214 12 15 chrY 13306 13645 -51499939 + CT-rich Low_complexity Low_complexity 1 338 0 530 289 168 43 chrY 14595 14773 -51498811 - HAL1 LINE L1 -1179 1328 1174 2397 116 0 0 chrY 14773 15083 -51498501 - AluSx SINE Alu -2 310 1 530 289 168 43 chrY 15083 15326 -51498258 - HAL1 LINE L1 -1333 1174 881 2624 71 0 0 chrY 16397 16708 -51496876 + AluY SINE Alu 1 311 0 2349 91 0 0 chrY 17052 17377 -51496207 + AluY SINE Alu 1 325 0 2337 97 7 3 chrY 17644 17952 -51495632 - AluSc SINE Alu 0 309 1 2375 103 6 3 chrY 17962 18273 -51495311 - AluSx SINE Alu 0 312 1 1728 95 9 0 chrY 18992 19214 -51494370 + AluSg/x SINE Alu 70 293 -17 1725 141 6 72 chrY 19327 19646 -51493938 - AluJo SINE Alu -14 298 1 2009 138 0 13 chrY 19925 20230 -51493354 - AluSx SINE Alu -10 302 2 2316 89 0 52 chrY 20272 20597 -51492987 + AluSp SINE Alu 2 309 -4 184 271 21 0 chrY 22316 22364 -51491220 + L2 LINE L2 3261 3309 -4 2436 90 0 0 chrY 22497 22798 -51490786 - AluSx SINE Alu -11 301 1 240 122 0 0 chrY 23119 23160 -51490424 + (T)n Simple_repeat Simple_repeat 1 41 0 1168 95 0 0 chrY 24641 24789 -51488795 - AluSc SINE Alu -161 148 1 2461 68 0 19 chrY 25183 25492 -51488092 + AluSc SINE Alu 1 303 -6 295 294 50 0 chrY 25560 25679 -51487905 - L1M4 LINE L1 -2171 3975 3851 423 0 0 0 chrY 25910 25957 -51487627 + (TG)n Simple_repeat Simple_repeat 2 48 0 2192 123 3 0 chrY 26002 26295 -51487289 - AluSx SINE Alu -18 294 1 3378 80 0 13 chrY 26928 27378 -51486206 - MLT2A1 LTR ERVL 0 444 1 2261 124 0 6 chrY 27585 27899 -51485685 - AluSx SINE Alu 0 312 1 694 251 52 22 chrY 28294 28363 -51485221 + MER58 DNA MER1_type 6 71 -2349 2095 134 3 6 chrY 28363 28676 -51484908 - AluSx SINE Alu 0 312 1 694 251 52 22 chrY 28676 28890 -51484694 + MER58 DNA MER1_type 71 2420 0 597 189 13 75 chrY 29035 29077 -51484507 - L1MB5 LINE L1 0 6174 6131 1793 115 58 0 chrY 29077 29337 -51484247 - AluSx SINE Alu -16 296 22 597 189 13 75 chrY 29337 29453 -51484131 - L1MB5 LINE L1 -43 6131 6026 504 246 0 30 chrY 29467 29601 -51483983 - MLT1C LTR MaLR 0 467 338 893 138 6 17 chrY 29606 29787 -51483797 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 268 189 27 0 chrY 29792 29866 -51483718 + CT-rich Low_complexity Low_complexity 2 77 0 2084 110 0 21 chrY 29866 30148 -51483436 - AluSx SINE Alu -36 276 1 1003 176 131 0 chrY 30149 30370 -51483214 - MLT1C LTR MaLR -113 354 105 440 80 0 148 chrY 30372 30425 -51483159 - MADE1 DNA Mariner 0 80 43 2307 112 0 0 chrY 30425 30721 -51482863 + AluSg SINE Alu 1 296 -14 440 80 0 148 chrY 30721 30755 -51482829 - MADE1 DNA Mariner -37 43 6 524 191 0 9 chrY 30760 30865 -51482719 - MLT1C LTR MaLR -363 104 1 852 230 0 0 chrY 30868 31064 -51482520 - L1MB5 LINE L1 -169 6005 5810 534 165 0 0 chrY 31177 31280 -51482304 + (CA)n Simple_repeat Simple_repeat 1 103 0 2263 117 0 0 chrY 31338 31629 -51481955 + AluSx SINE Alu 3 293 -19 1477 158 3 89 chrY 33963 34089 -51479495 + MER47A DNA MER2_type 1 136 -2187 2034 125 24 14 chrY 34089 34386 -51479198 - AluSq SINE Alu -13 300 1 1477 158 3 89 chrY 34386 34595 -51478989 + MER47A DNA MER2_type 136 307 -59 1519 225 0 10 chrY 34595 34906 -51478678 - AluJo SINE Alu 0 312 5 270 280 17 68 chrY 34937 35029 -51478555 - MIR SINE MIR -40 222 136 3469 71 21 5 chrY 35029 35466 -51478118 - MLT2A1 LTR ERVL 0 444 1 270 280 17 68 chrY 35466 35491 -51478093 - MIR SINE MIR -126 136 111 3654 124 26 0 chrY 35619 36159 -51477425 - MER41A LTR ERV1 0 554 1 1036 109 14 0 chrY 36419 36566 -51477018 + L1PA10 LINE L1 6020 6168 0 1030 187 41 8 chrY 36862 37108 -51476476 + L1MA4 LINE L1 6046 6299 -1 4073 178 80 9 chrY 37194 37965 -51475619 - LTR1B LTR ERV1 0 826 1 2348 125 0 0 chrY 38200 38512 -51475072 + AluSx SINE Alu 1 312 0 346 194 62 131 chrY 38756 38916 -51474668 - MER5A DNA MER1_type 0 189 41 859 228 47 9 chrY 39102 39313 -51474271 + MER20 DNA MER1_type 1 219 0 318 194 37 37 chrY 39330 39438 -51474146 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 641 141 19 6 chrY 39449 39605 -51473979 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 728 254 46 0 chrY 39621 39818 -51473766 + MER20 DNA MER1_type 14 219 0 1014 97 0 156 chrY 40516 40702 -51472882 + AluSg/x SINE Alu 138 294 -18 1880 195 4 30 chrY 40855 40964 -51472620 + MLT1B LTR MaLR 1 111 -285 2298 70 33 33 chrY 40964 41266 -51472318 + AluY SINE Alu 1 302 -9 1880 195 4 30 chrY 41266 41560 -51472024 + MLT1B LTR MaLR 111 396 0 2178 167 8 13 chrY 41589 41978 -51471606 + MLT1B LTR MaLR 4 390 0 1093 175 5 24 chrY 41979 42216 -51471368 + MLT1B LTR MaLR 159 467 0 1235 178 9 0 chrY 42216 42446 -51471138 + MLT1B LTR MaLR 158 389 -1 334 278 21 10 chrY 42455 42552 -51471032 + MER5A DNA MER1_type 6 103 -86 3172 166 46 88 chrY 43306 43535 -51470049 + LTR39 LTR ERV1 1 238 -545 1960 135 10 10 chrY 43535 43823 -51469761 - AluSx SINE Alu -24 288 1 3172 166 46 88 chrY 43823 44402 -51469182 + LTR39 LTR ERV1 238 775 -8 3431 144 11 0 chrY 44407 44950 -51468634 + MER41A LTR ERV1 6 554 0 2099 143 0 0 chrY 45268 45576 -51468008 + AluSx SINE Alu 1 308 -4 1862 160 0 17 chrY 45576 45876 -51467708 + AluSg SINE Alu 1 295 -15 324 70 0 0 chrY 45876 45919 -51467665 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2977 144 20 64 chrY 46372 46653 -51466931 - MER39B LTR ERV1 -27 626 334 2462 73 0 0 chrY 46653 46941 -51466643 - AluSc SINE Alu -21 288 1 2977 144 20 64 chrY 46941 47060 -51466524 - MER39B LTR ERV1 -319 334 211 2619 52 0 3 chrY 47060 47367 -51466217 - AluY SINE Alu -5 306 1 2977 144 20 64 chrY 47367 47619 -51465965 - MER39B LTR ERV1 -442 211 2 2266 131 0 0 chrY 48987 49299 -51464285 + AluSx SINE Alu 1 312 0 228 378 56 14 chrY 49897 50040 -51463544 + MIR SINE MIR 103 251 -11 418 247 159 12 chrY 50316 50486 -51463098 - MLT1J2 LTR MaLR 0 450 256 1289 191 22 4 chrY 50632 50904 -51462680 + L1MB5 LINE L1 5809 6085 -89 1691 187 3 31 chrY 51333 51654 -51461930 - AluJo SINE Alu 0 312 1 2751 200 33 6 chrY 52688 53233 -51460351 + L1MB5 LINE L1 5615 6174 0 23 54 0 0 chrY 53510 53547 -51460037 + AT_rich Low_complexity Low_complexity 1 37 0 252 188 25 12 chrY 53555 53635 -51459949 + GA-rich Low_complexity Low_complexity 4 84 0 478 218 17 11 chrY 53659 53838 -51459746 + GA-rich Low_complexity Low_complexity 1 180 0 1167 112 0 0 chrY 53874 53982 -51459602 + (GGAA)n Simple_repeat Simple_repeat 1 287 0 1167 112 0 0 chrY 53982 54161 -51459423 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 198 71 0 0 chrY 54681 54709 -51458875 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 3983 193 19 4 chrY 55262 56013 -51457571 + L1MB5 LINE L1 5407 6168 -6 2412 106 0 0 chrY 56046 56358 -51457226 + AluSx SINE Alu 1 312 0 878 50 0 0 chrY 56375 56476 -51457108 + AluYa5 SINE Alu 1 101 -210 4287 74 9 7 chrY 56477 57034 -51456550 - LTR6B LTR ERV1 0 558 1 1560 63 5 15 chrY 57034 57240 -51456344 + AluYa5 SINE Alu 99 302 -9 1127 164 0 11 chrY 57802 57991 -51455593 + AluJb SINE Alu 123 309 -3 1148 39 0 0 chrY 58148 58277 -51455307 + AluY SINE Alu 1 129 -182 1976 142 13 10 chrY 58630 58941 -51454643 + AluJo SINE Alu 1 312 0 1979 122 42 7 chrY 59145 59433 -51454151 - AluSx SINE Alu -14 298 1 285 254 67 22 chrY 59440 59574 -51454010 + L1ME2 LINE L1 4976 5115 -1031 869 156 28 0 chrY 59575 59716 -51453868 + AluSg/x SINE Alu 153 297 -15 189 0 0 0 chrY 59756 59777 -51453807 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1061 186 4 75 chrY 59877 60014 -51453570 + MER2 DNA MER2_type 1 117 -228 2218 120 0 0 chrY 60014 60314 -51453270 - AluSx SINE Alu -12 300 1 1061 186 4 75 chrY 60314 60402 -51453182 + MER2 DNA MER2_type 117 210 -135 225 338 0 12 chrY 60434 60514 -51453070 + MER2 DNA MER2_type 267 345 0 227 30 0 30 chrY 60550 60583 -51453001 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 24 32 0 0 chrY 60777 60808 -51452776 + AT_rich Low_complexity Low_complexity 1 31 0 2034 112 35 0 chrY 60816 61102 -51452482 + AluSg SINE Alu 1 296 -14 443 189 7 45 chrY 61142 61290 -51452294 - MER4A LTR ERV1 -203 461 261 646 111 0 10 chrY 61290 61389 -51452195 - MER4A LTR ERV1 -566 98 1 4708 101 23 14 chrY 61427 61846 -51451738 + PABL_A LTR ERV1 1 430 -230 2499 56 0 3 chrY 61846 62152 -51451432 + AluY SINE Alu 1 305 -6 4708 101 23 14 chrY 62152 62384 -51451200 + PABL_A LTR ERV1 430 658 -2 575 260 50 10 chrY 62408 62608 -51450976 - MER67C LTR ERV1 -469 241 34 962 260 71 0 chrY 62971 63279 -51450305 + L1ME2 LINE L1 5465 5794 -370 379 259 121 50 chrY 63287 63349 -51450235 + L1ME2 LINE L1 5872 5928 -236 2351 78 3 0 chrY 63349 63645 -51449939 + AluY SINE Alu 1 297 -14 379 259 121 50 chrY 63645 63821 -51449763 + L1ME2 LINE L1 5928 6127 -37 22 0 0 0 chrY 63872 63894 -51449690 + AT_rich Low_complexity Low_complexity 1 22 0 2438 87 3 0 chrY 64201 64511 -51449073 - AluY SINE Alu 0 311 1 318 272 60 106 chrY 64516 64751 -51448833 - MIR SINE MIR -19 243 20 378 299 7 28 chrY 64945 65089 -51448495 + L1ME3 LINE L1 5627 5767 -403 459 245 20 0 chrY 65118 65220 -51448364 + U6 snRNA snRNA 4 107 0 975 206 46 27 chrY 65220 65482 -51448102 + L1MA8 LINE L1 5960 6226 -65 300 228 89 41 chrY 65523 65577 -51448007 + L1ME3 LINE L1 5868 5918 -244 2350 139 94 54 chrY 65577 66043 -51447541 - MER31A LTR ERV1 0 485 1 300 228 89 41 chrY 66043 66111 -51447473 + L1ME3 LINE L1 5918 5996 -166 366 234 156 44 chrY 66683 66888 -51446696 - LTR37A LTR ERV1 -2 424 197 1226 210 11 11 chrY 69462 69729 -51443855 + L1MB5 LINE L1 5831 6097 -77 210 253 0 80 chrY 70994 71069 -51442515 + L2 LINE L2 3203 3271 -1 310 239 87 0 chrY 72179 72271 -51441313 + L1M4 LINE L1 5102 5201 -945 483 258 39 7 chrY 74439 74594 -51438990 - MER39 LTR ERV1 -11 696 537 542 126 0 0 chrY 74599 74686 -51438898 - AluSp/q SINE Alu -5 308 222 550 287 71 35 chrY 74689 74943 -51438641 - LTR47B LTR ERVL -130 313 51 259 210 0 32 chrY 74989 75051 -51438533 - LTR49-int LTR ERV1 -2354 4244 4185 1422 332 89 37 chrY 75265 75996 -51437588 - LTR49-int LTR ERV1 -439 6683 5885 1981 140 0 10 chrY 75996 76322 -51437262 - AluSc SINE Alu 0 309 1 1422 332 89 37 chrY 76322 76589 -51436995 - LTR49-int LTR ERV1 -1237 5885 5633 1883 137 20 13 chrY 77187 77486 -51436098 + AluSx SINE Alu 1 301 -11 1451 193 64 10 chrY 77578 77874 -51435710 - AluJb SINE Alu 0 312 1 2492 168 46 26 chrY 77874 77940 -51435644 + Tigger3(Golem) DNA MER2_type 2511 2574 -455 2114 134 0 0 chrY 77940 78238 -51435346 + AluSx SINE Alu 1 298 -14 2492 168 46 26 chrY 78238 78670 -51434914 + Tigger3(Golem) DNA MER2_type 2574 3019 -10 306 50 0 0 chrY 78761 78801 -51434783 + (CA)n Simple_repeat Simple_repeat 2 41 0 2039 125 18 0 chrY 78827 79129 -51434455 + AluSg SINE Alu 1 307 0 1341 193 97 65 chrY 79218 79532 -51434052 - MER65C LTR ERV1 -15 446 113 1997 128 14 0 chrY 79532 79814 -51433770 - AluSx SINE Alu -26 286 1 1341 193 97 65 chrY 79814 79930 -51433654 - MER65C LTR ERV1 -348 113 2 325 328 67 45 chrY 80067 80184 -51433400 - LTR49-int LTR ERV1 -172 4699 4586 1908 140 13 17 chrY 80184 80484 -51433100 - AluSq SINE Alu -11 302 4 325 328 67 45 chrY 80484 80680 -51432904 - LTR49-int LTR ERV1 -285 4586 4379 922 252 117 11 chrY 80776 81058 -51432526 - LTR49-int LTR ERV1 -698 4173 3862 2052 125 3 0 chrY 81135 81423 -51432161 + AluSp SINE Alu 1 289 -24 351 113 0 0 chrY 81423 81476 -51432108 + (TA)n Simple_repeat Simple_repeat 2 54 0 328 224 122 10 chrY 81600 81698 -51431886 - LTR49-int LTR ERV1 -1409 3462 3354 942 246 45 10 chrY 81805 82094 -51431490 - LTR49-int LTR ERV1 -1570 3301 3003 18923 135 10 13 chrY 82115 85909 -51427675 - L1PA10 LINE L1 -6 6162 2377 36469 94 15 19 chrY 85933 92106 -51421478 - L1PA6 LINE L1 -2 6152 11 4212 159 37 8 chrY 92097 92878 -51420706 - L1PA10 LINE L1 -3739 2407 1604 * 453 237 61 132 chrY 92878 93017 -51420567 - LTR49-int LTR ERV1 -1850 4481 4334 2230 113 3 0 chrY 93017 93309 -51420275 - AluY SINE Alu -18 293 1 453 237 61 132 chrY 93309 93365 -51420219 - LTR49-int LTR ERV1 -1997 4334 4276 1728 180 0 7 chrY 93365 93660 -51419924 + AluSx SINE Alu 1 293 -19 453 237 61 132 chrY 93660 93680 -51419904 - LTR49-int LTR ERV1 -2055 4276 4256 1985 204 23 43 chrY 93680 94120 -51419464 - MSTB1 LTR MaLR 0 432 2 453 237 61 132 chrY 94120 94378 -51419206 - LTR49-int LTR ERV1 -2075 4256 4040 867 199 6 0 chrY 94449 94605 -51418979 + AluSg/x SINE Alu 113 269 -41 249 119 0 0 chrY 94619 94661 -51418923 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 7776 191 29 45 chrY 94672 95477 -51418107 - L1PA15 LINE L1 0 6165 5349 2135 111 0 38 chrY 95477 95793 -51417791 - AluSp SINE Alu -5 308 5 7776 191 29 45 chrY 95793 96191 -51417393 - L1PA15 LINE L1 -816 5349 4946 2140 128 0 0 chrY 96191 96488 -51417096 - AluY SINE Alu -14 297 1 7776 191 29 45 chrY 96488 97950 -51415634 - L1PA15 LINE L1 -1219 4946 3511 2282 107 3 0 chrY 97965 98273 -51415311 - AluY SINE Alu -2 309 1 1901 132 3 35 chrY 98641 98951 -51414633 + AluSc SINE Alu 1 300 -9 1518 209 3 11 chrY 99166 99449 -51414135 + AluSx SINE Alu 9 289 -23 501 152 114 32 chrY 99450 99608 -51413976 - LTR49-int LTR ERV1 -1149 3787 3617 1305 164 34 57 chrY 99797 100095 -51413489 - MER65C LTR ERV1 -31 430 140 2219 99 10 0 chrY 100103 100426 -51413158 + AluSp SINE Alu 1 313 0 272 182 0 0 chrY 100445 100489 -51413095 - MER65C LTR ERV1 -417 44 1 838 141 14 7 chrY 100511 100653 -51412931 - L1MA3 LINE L1 0 6305 6163 3901 182 33 53 chrY 100657 100905 -51412679 - L1MA5 LINE L1 -292 6008 5757 228 89 0 0 chrY 100905 100950 -51412634 + LTR66 LTR ERVL 398 442 -168 2165 90 53 17 chrY 100950 101249 -51412335 - AluSg SINE Alu 0 310 1 3901 182 33 53 chrY 101249 101854 -51411730 - L1MA5 LINE L1 -542 5758 5143 2209 126 3 0 chrY 101854 102163 -51411421 - AluSp SINE Alu -3 310 1 3901 182 33 53 chrY 102163 102950 -51410634 - L1MA5 LINE L1 -1157 5143 4411 2147 134 3 0 chrY 102950 103255 -51410329 - AluSx SINE Alu -6 306 1 861 200 31 17 chrY 103284 103484 -51410100 + L1MA8 LINE L1 5961 6178 -125 308 250 0 0 chrY 103451 103523 -51410061 + L1M4 LINE L1 3750 3821 -2325 * 781 264 29 13 chrY 103523 103762 -51409822 + MLT1D LTR MaLR 263 505 0 1903 137 47 3 chrY 103959 104280 -51409304 - AluSx SINE Alu 0 334 1 1724 232 104 35 chrY 104892 105410 -51408174 + LTR64 LTR ERVK 3 556 -2 1991 95 11 0 chrY 105539 105825 -51407759 + AluSp SINE Alu 22 310 0 313 238 122 49 chrY 106031 106195 -51407389 + L1ME LINE L1 5641 5816 -305 240 111 0 0 chrY 106751 106787 -51406797 + (CA)n Simple_repeat Simple_repeat 1 36 0 456 143 0 0 chrY 106921 106984 -51406600 - AluS SINE Alu -21 291 229 228 170 19 38 chrY 107040 107093 -51406491 - LTR68 LTR ERV1 -303 437 386 306 87 0 0 chrY 107565 107611 -51405973 + (CA)n Simple_repeat Simple_repeat 2 47 0 236 159 0 0 chrY 107623 107667 -51405917 + HAL1 LINE L1 2111 2154 -353 1918 151 14 0 chrY 107756 108040 -51405544 - AluSx SINE Alu -24 288 1 835 248 0 6 chrY 108095 108295 -51405289 - AluJo SINE Alu 0 320 122 6719 139 73 5 chrY 108631 108707 -51404877 - MER41-int LTR ERV1 -447 7090 7021 2099 128 3 13 chrY 108707 109020 -51404564 - AluSg SINE Alu 0 310 1 6719 139 73 5 chrY 109020 110029 -51403555 - MER41-int LTR ERV1 -516 7021 5931 10691 128 20 19 chrY 110029 112074 -51401510 + L1P3 LINE L1 687 2738 -3723 2445 216 28 55 chrY 112053 112776 -51400808 + L1M4 LINE L1 4392 5094 -1367 * 3366 135 43 53 chrY 112854 113478 -51400106 - MER41-int LTR ERV1 -1671 5866 5249 1736 111 23 24 chrY 113477 113517 -51400067 - MER41-int LTR ERV1 -2572 2645 2606 * 2078 137 0 3 chrY 113517 113823 -51399761 + AluSx SINE Alu 1 305 -7 1736 111 23 24 chrY 113823 114170 -51399414 - MER41-int LTR ERV1 -2611 2606 2214 * 2432 142 134 14 chrY 114152 114659 -51398925 - MER41-int LTR ERV1 -2578 3368 2801 520 78 184 58 chrY 114635 114738 -51398846 - MER41-int LTR ERV1 -4781 1165 1050 * 6258 127 48 50 chrY 114726 115245 -51398339 - MER41-int LTR ERV1 -4769 3047 2528 2596 148 42 29 chrY 115245 115723 -51397861 - LTR19A LTR ERV1 -2 484 1 6258 127 48 50 chrY 115723 116460 -51397124 - MER41-int LTR ERV1 -5288 2528 1794 1509 170 8 0 chrY 116480 116727 -51396857 - AluY SINE Alu -25 286 38 676 186 9 89 chrY 116731 116953 -51396631 - MER4A LTR ERV1 -140 524 261 475 155 31 21 chrY 116953 117050 -51396534 - MER4A LTR ERV1 -566 98 1 4559 160 36 32 chrY 117050 117942 -51395642 - MER41-int LTR ERV1 -6213 1603 709 2627 111 22 24 chrY 117942 118492 -51395092 - PABL_A LTR ERV1 -69 591 1 193 220 20 20 chrY 118543 118593 -51394991 + MIR SINE MIR 199 248 -14 673 118 80 96 chrY 118741 118869 -51394715 + MER4A LTR ERV1 1 127 -537 2153 89 3 48 chrY 118869 119183 -51394401 + AluY SINE Alu 1 300 -11 673 118 80 96 chrY 119183 119241 -51394343 + MER4A LTR ERV1 127 184 -480 1738 112 0 0 chrY 119241 119482 -51394102 - AluY SINE Alu -22 289 49 3109 182 47 7 chrY 119482 120059 -51393525 - MER41-int LTR ERV1 -7111 705 106 1068 183 0 0 chrY 120082 120268 -51393316 + MER4A LTR ERV1 171 356 -308 1561 114 0 0 chrY 120332 120533 -51393051 - AluSp SINE Alu -112 201 1 544 169 141 87 chrY 120553 120737 -51392847 + MER4A LTR ERV1 355 548 -116 414 0 0 0 chrY 120737 120783 -51392801 + (GA)n Simple_repeat Simple_repeat 1 46 0 765 180 0 14 chrY 120783 120922 -51392662 + L1MA10 LINE L1 6161 6297 -37 198 71 0 0 chrY 120939 120967 -51392617 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2497 34 0 20 chrY 120967 121254 -51392330 - AluY SINE Alu -28 283 1 272 292 21 10 chrY 121344 121440 -51392144 - L1MB7 LINE L1 -26 6158 6062 1845 173 92 19 chrY 124720 125131 -51388453 - MER67A LTR ERV1 -102 441 1 234 287 37 56 chrY 126379 126487 -51387097 + MIR SINE MIR 46 151 -111 1386 153 65 102 chrY 129142 129494 -51384090 - L1PB3 LINE L1 -9 6145 5807 2879 10 0 0 chrY 131199 131509 -51382075 - AluYa5 SINE Alu -1 310 1 2279 95 7 0 chrY 134202 134496 -51379088 - AluSp SINE Alu -16 297 2 308 270 43 43 chrY 136338 136501 -51377083 + L1MC5 LINE L1 7745 7907 -54 2222 104 3 7 chrY 136505 136803 -51376781 - AluY SINE Alu -14 297 1 779 145 16 0 chrY 136964 137088 -51376496 - AluSx SINE Alu -11 299 174 892 101 8 0 chrY 137089 137208 -51376376 - AluSx SINE Alu -192 120 1 225 246 57 57 chrY 137295 137417 -51376167 - L1MC4a LINE L1 -1347 6461 6340 3370 219 75 39 chrY 137437 137783 -51375801 - L1MB2 LINE L1 -2 6405 6073 1935 150 7 3 chrY 137783 138083 -51375501 - AluSq SINE Alu -12 301 1 3370 219 75 39 chrY 138083 139138 -51374446 - L1MB2 LINE L1 -334 6073 4955 497 215 93 19 chrY 139172 139377 -51374207 - L1MB2 LINE L1 -2912 3470 3251 679 253 5 61 chrY 139378 139668 -51373916 - L1MB2 LINE L1 -3750 2632 2361 455 209 57 81 chrY 139707 139918 -51373666 - L1MB2 LINE L1 -4048 2336 2131 453 250 167 15 chrY 140055 140132 -51373452 - L1MB2 LINE L1 -4512 1872 1808 195 42 0 0 chrY 140132 140156 -51373428 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 453 250 167 15 chrY 140156 140282 -51373302 - L1MB2 LINE L1 -4576 1808 1638 3550 158 74 36 chrY 140296 140998 -51372586 + MER4E LTR ERV1 1 729 -50 1344 208 135 75 chrY 141001 141726 -51371858 - L1MB2 LINE L1 -4761 1623 855 376 209 0 57 chrY 141730 141835 -51371749 - L1M3c LINE L1 -5124 1017 919 2132 125 7 0 chrY 141974 142279 -51371305 - AluSp SINE Alu -5 308 2 866 138 0 29 chrY 142279 142417 -51371167 - AluSq/x SINE Alu -177 135 2 1027 169 6 6 chrY 142418 142584 -51371000 - AluSg/x SINE Alu -11 299 134 370 294 57 64 chrY 142604 142869 -51370715 - L1MEd LINE L1 -4937 1182 920 2287 93 6 10 chrY 146236 146548 -51367036 - AluY SINE Alu 0 311 1 738 267 4 43 chrY 147540 147772 -51365812 - MLT1E2 LTR MaLR -160 466 244 3473 190 32 10 chrY 147877 148556 -51365028 - MER52A LTR ERV1 -2 1753 1060 342 229 79 14 chrY 148524 148664 -51364920 - MER52C LTR ERV1 -680 598 450 * 1279 213 48 21 chrY 148886 149177 -51364407 - AluSx SINE Alu -13 299 1 1857 143 0 4 chrY 150596 150868 -51362716 + AluSg SINE Alu 19 289 -21 507 237 237 6 chrY 150869 151042 -51362542 - MLT1C LTR MaLR -57 410 198 2252 120 3 0 chrY 151076 151384 -51362200 - AluY SINE Alu 0 311 3 663 227 65 38 chrY 151461 151646 -51361938 - Charlie1a DNA MER1_type -1225 230 41 283 281 110 20 chrY 151899 152045 -51361539 + L1ME3 LINE L1 5801 5959 -203 809 238 0 0 chrY 152365 152525 -51361059 - AluJo SINE Alu -15 297 138 3749 121 2 4 chrY 152526 153038 -51360546 - MER9 LTR ERVK 0 511 1 770 165 23 30 chrY 153049 153182 -51360402 - AluJo SINE Alu -169 133 2 923 248 97 71 chrY 153183 153427 -51360157 - L1MDa LINE L1 -2726 3814 3578 1958 148 3 16 chrY 153427 153732 -51359852 - AluSx SINE Alu -11 301 1 923 248 97 71 chrY 153732 154727 -51358857 - L1MDa LINE L1 -2962 3578 2524 583 234 37 21 chrY 154736 154924 -51358660 - PABL_B LTR ERV1 -2 665 475 535 203 149 47 chrY 155432 155753 -51357831 - L1MDa LINE L1 -4037 2503 2150 1408 286 75 21 chrY 155770 156740 -51356844 - L1MDa LINE L1 -5242 1298 35 7944 63 19 0 chrY 156835 157823 -51355761 + LTR13 LTR ERVK 1 1007 0 1856 136 3 89 chrY 157878 158216 -51355368 + AluSx SINE Alu 1 309 -3 2362 85 0 0 chrY 158216 158511 -51355073 + AluY SINE Alu 1 295 -16 2011 154 13 0 chrY 158964 159270 -51354314 + AluSx SINE Alu 1 310 -2 492 100 0 0 chrY 160094 160174 -51353410 + (TA)n Simple_repeat Simple_repeat 2 81 0 1665 183 37 0 chrY 160578 160878 -51352706 + AluSx SINE Alu 1 311 -1 1137 224 79 34 chrY 161366 161745 -51351839 + MSTD LTR MaLR 1 396 0 2319 64 17 10 chrY 162886 163184 -51350400 + AluY SINE Alu 1 300 -11 1300 136 15 5 chrY 164566 164764 -51348820 + AluSc SINE Alu 103 302 -7 2138 136 0 0 chrY 164775 165069 -51348515 + AluSg SINE Alu 5 298 -12 628 247 59 0 chrY 165069 165264 -51348320 + L1MB5 LINE L1 5964 6161 -5 2237 102 0 13 chrY 165269 165573 -51348011 + AluY SINE Alu 1 300 -11 12558 119 22 10 chrY 165573 167588 -51345996 - HERVK3 LTR ERVK -5167 2076 38 911 173 6 6 chrY 167594 167767 -51345817 - LTR3 LTR ERVK -3 429 257 1400 172 8 0 chrY 167803 168041 -51345543 - LTR3 LTR ERVK -171 261 22 4228 218 74 6 chrY 168053 168998 -51344586 - MER83-int LTR ERV1 -3268 1017 9 2105 161 25 39 chrY 169008 169444 -51344140 - MER83 LTR ERV1 -13 435 6 452 208 14 14 chrY 169638 169782 -51343802 + CT-rich Low_complexity Low_complexity 2 145 0 1164 247 36 23 chrY 169782 170090 -51343494 - AluJo SINE Alu 0 312 1 22 0 0 0 chrY 170191 170213 -51343371 + AT_rich Low_complexity Low_complexity 1 22 0 2053 122 3 0 chrY 170337 170623 -51342961 + AluSg1 SINE Alu 1 287 -22 1770 185 3 0 chrY 170632 170919 -51342665 + AluJb SINE Alu 1 288 -24 1643 169 26 0 chrY 170929 171196 -51342388 + AluJb SINE Alu 37 310 -2 314 208 24 24 chrY 171199 171324 -51342260 + GA-rich Low_complexity Low_complexity 3 127 0 769 148 9 0 chrY 171444 171559 -51342025 + FLAM_C SINE Alu 1 116 -17 1976 136 0 14 chrY 171674 171988 -51341596 + AluSg SINE Alu 1 310 0 2365 63 0 7 chrY 172053 172354 -51341230 + AluY SINE Alu 1 299 -12 1011 207 14 5 chrY 172355 172577 -51341007 - L1MB2 LINE L1 -344 5827 5604 1579 256 66 26 chrY 172598 173461 -51340123 - L1M4 LINE L1 -3172 3210 2307 762 246 62 9 chrY 173461 173685 -51339899 - MER46A DNA MER2_type 0 236 1 1579 256 66 26 chrY 173685 173849 -51339735 - L1M4 LINE L1 -4075 2307 2151 209 191 22 45 chrY 173851 173940 -51339644 + T-rich Low_complexity Low_complexity 2 88 0 457 310 21 7 chrY 173967 174109 -51339475 - FRAM SINE Alu -32 144 1 2129 227 62 82 chrY 174228 174259 -51339325 - L1M4 LINE L1 -4488 1896 1866 2101 85 44 10 chrY 174259 174552 -51339032 + AluY SINE Alu 1 303 -8 2129 227 62 82 chrY 174552 175031 -51338553 - L1M4 LINE L1 -4518 1866 1379 623 217 16 0 chrY 175031 175160 -51338424 - FLAM_A SINE Alu -1 132 2 2129 227 62 82 chrY 175160 175807 -51337777 - L1M4 LINE L1 -5005 1379 859 2275 67 16 22 chrY 175807 176119 -51337465 + AluY SINE Alu 1 310 -1 2129 227 62 82 chrY 176119 176201 -51337383 - L1M4 LINE L1 -5525 859 777 21 36 0 0 chrY 177172 177200 -51336384 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 178988 179008 -51334576 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2159 124 0 0 chrY 179014 179305 -51334279 - AluSx SINE Alu -21 291 1 512 268 7 7 chrY 179683 179821 -51333763 + AluSq/x SINE Alu 1 138 -175 771 208 169 0 chrY 179821 180028 -51333556 - AluSg SINE Alu -7 303 62 970 266 34 20 chrY 180041 180395 -51333189 + L1PB1 LINE L1 7 365 -6498 6501 196 49 118 chrY 180423 181275 -51332309 + L1PB1 LINE L1 2006 2915 -3952 2145 104 7 19 chrY 181275 181582 -51332002 + AluSg SINE Alu 1 303 -7 6501 196 49 118 chrY 181582 183051 -51330533 + L1PB1 LINE L1 2915 4484 -2383 238 226 52 87 chrY 183051 183166 -51330418 + LTR4 LTR ERV1 7 117 -479 6501 196 49 118 chrY 183166 183444 -51330140 + L1PB1 LINE L1 4484 4780 -2087 518 264 19 28 chrY 183444 183656 -51329928 + LTR4 LTR ERV1 385 594 -2 6501 196 49 118 chrY 183656 184558 -51329026 + L1PB1 LINE L1 4780 5743 -1124 2465 85 0 0 chrY 184558 184863 -51328721 + AluY SINE Alu 2 306 -5 6501 196 49 118 chrY 184863 185896 -51327688 + L1PB1 LINE L1 5743 6485 -382 1697 163 33 23 chrY 185896 186197 -51327387 + AluSx SINE Alu 1 304 -8 6501 196 49 118 chrY 186197 186555 -51327029 + L1PB1 LINE L1 6485 6866 -1 206 174 0 43 chrY 186943 186977 -51326607 + CT-rich Low_complexity Low_complexity 5 38 -10 2447 93 0 0 chrY 186977 187287 -51326297 - AluY SINE Alu -1 310 1 206 174 0 43 chrY 187287 187298 -51326286 + CT-rich Low_complexity Low_complexity 38 48 0 1240 197 32 29 chrY 187299 187450 -51326134 - AluJo SINE Alu -21 291 137 2132 135 3 3 chrY 187450 187746 -51325838 - AluSq SINE Alu -12 301 6 1240 197 32 29 chrY 187746 187873 -51325711 - AluJo SINE Alu -175 137 12 1632 206 0 13 chrY 188486 188787 -51324797 - AluJo SINE Alu -5 307 11 181 57 57 0 chrY 188797 188832 -51324752 + T-rich Low_complexity Low_complexity 1 37 0 284 323 16 16 chrY 189898 190022 -51323562 + MER21A LTR ERV1 550 673 -258 4786 119 53 12 chrY 190368 191117 -51322467 - LTR17 LTR ERV1 0 780 1 631 248 66 9 chrY 191145 191464 -51322120 - L1M4 LINE L1 -2912 3234 2898 695 203 86 16 chrY 191469 191656 -51321928 + LTR54 LTR ERV1 1 200 -310 455 178 0 0 chrY 191705 191795 -51321789 + L1M3f LINE L1 73 162 -5166 3469 234 82 19 chrY 191798 192958 -51320626 + L1M3f LINE L1 383 1704 -4624 252 0 0 0 chrY 192958 192986 -51320598 + (CA)n Simple_repeat Simple_repeat 2 29 0 3469 234 82 19 chrY 192986 193634 -51319950 + L1M3f LINE L1 1704 2310 -4018 408 194 28 0 chrY 193649 193721 -51319863 - AluJ/FRAM SINE Alu -23 289 216 5190 212 95 49 chrY 193745 195684 -51317900 + L1M3f LINE L1 2323 4350 -1978 2233 97 0 3 chrY 195684 195983 -51317601 + AluY SINE Alu 1 298 -13 189 45 45 45 chrY 196046 196090 -51317494 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 698 193 0 7 chrY 196374 196524 -51317060 + LOR1a LTR ERV1 1 149 -348 3603 220 13 29 chrY 196527 197016 -51316568 - L1 LINE L1 -900 5246 4751 1039 181 206 34 chrY 197016 197308 -51316276 + MER61A LTR ERV1 2 343 0 3603 220 13 29 chrY 197308 197941 -51315643 - L1 LINE L1 -1395 4751 4142 1195 177 0 51 chrY 197947 198145 -51315439 + LOR1-int LTR ERV1 3663 3870 -4250 276 30 0 0 chrY 198145 198178 -51315406 + (TTA)n Simple_repeat Simple_repeat 1 33 0 7544 28 0 0 chrY 198179 199839 -51313745 - L1PA3 LINE L1 -18 6137 4488 1195 177 0 51 chrY 199839 199892 -51313692 + LOR1-int LTR ERV1 3869 3903 -4217 795 180 0 31 chrY 199914 200075 -51313509 + MER61A LTR ERV1 188 343 0 631 161 0 8 chrY 200076 200206 -51313378 - L1 LINE L1 -1371 4775 4647 1356 126 59 20 chrY 200206 200460 -51313124 + LOR1-int LTR ERV1 3916 4179 -3941 10443 122 9 1 chrY 200461 202152 -51311432 - L1P LINE L1 -3178 2968 1263 * 12780 79 6 3 chrY 202146 202629 -51310955 + L1PA7 LINE L1 3101 3581 -2573 1990 118 31 10 chrY 202629 202917 -51310667 - AluSc SINE Alu -15 294 1 12780 79 6 3 chrY 202917 205483 -51308101 + L1PA7 LINE L1 3581 6151 -3 454 130 26 13 chrY 205602 205679 -51307905 + THE1B LTR MaLR 287 364 0 752 217 30 18 chrY 205679 205845 -51307739 - THE1C LTR MaLR -207 168 1 476 64 73 82 chrY 205846 205929 -51307655 + LOR1-int LTR ERV1 4235 4318 -3802 1471 217 20 7 chrY 205929 206228 -51307356 - AluJb SINE Alu -9 303 1 476 64 73 82 chrY 206228 206254 -51307330 + LOR1-int LTR ERV1 4318 4343 -3777 832 149 8 0 chrY 206261 206395 -51307189 + LOR1-int LTR ERV1 5930 6064 -2056 1385 163 6 27 chrY 206489 206802 -51306782 + MER4A LTR ERV1 261 625 -39 2297 182 7 10 chrY 206804 207221 -51306363 + LOR1a LTR ERV1 82 497 0 2529 121 0 16 chrY 207229 207608 -51305976 + THE1C LTR MaLR 1 373 -2 1911 137 0 0 chrY 207881 208152 -51305432 - AluSx SINE Alu -2 310 40 373 211 44 114 chrY 208342 208569 -51305015 - L1MC5 LINE L1 -94 7867 7657 284 198 44 11 chrY 208608 208699 -51304885 + (TA)n Simple_repeat Simple_repeat 2 95 0 978 243 53 60 chrY 208727 209197 -51304387 - L1MC5 LINE L1 -370 7591 7125 1552 186 7 30 chrY 209413 209736 -51303848 - AluJb SINE Alu 0 316 1 1971 125 45 0 chrY 210717 211006 -51302578 - AluSg SINE Alu -5 305 4 1304 176 137 4 chrY 211036 211298 -51302286 - AluSp SINE Alu -10 303 7 625 226 8 0 chrY 211314 211438 -51302146 - FLAM_C SINE Alu -8 125 1 600 188 91 108 chrY 211634 211695 -51301889 + Charlie1b DNA MER1_type 7 67 -2694 2236 99 0 19 chrY 211695 212009 -51301575 + AluY SINE Alu 1 308 -3 600 188 91 108 chrY 212009 212133 -51301451 + Charlie1b DNA MER1_type 67 189 -334 276 202 134 123 chrY 212137 212429 -51301155 - L1MC4 LINE L1 -830 7131 6837 247 143 18 36 chrY 212426 212482 -51301102 + MLT1B-int LTR MaLR 1680 1734 -1 * 1396 188 122 14 chrY 212483 212835 -51300749 + MLT1B LTR MaLR 1 390 0 450 254 48 8 chrY 213777 213903 -51299681 + FRAM SINE Alu 22 152 -24 794 224 145 28 chrY 214045 214300 -51299284 - AluJo SINE Alu -17 295 11 354 261 92 7 chrY 214544 214686 -51298898 - AluJb SINE Alu -33 269 116 1601 107 110 52 chrY 217589 217880 -51295704 + AluSq SINE Alu 1 308 -5 2286 53 0 69 chrY 218356 218675 -51294909 - AluY SINE Alu -14 297 1 1898 144 10 0 chrY 218953 219244 -51294340 - AluSx SINE Alu -18 294 1 366 42 0 0 chrY 219350 219398 -51294186 + (TA)n Simple_repeat Simple_repeat 1 48 0 180 214 0 0 chrY 220080 220108 -51293476 + L2 LINE L2 3224 3251 -21 785 249 56 9 chrY 221127 221360 -51292224 + Charlie1b DNA MER1_type 12 255 -268 547 198 48 21 chrY 221393 221580 -51292004 + Charlie1b DNA MER1_type 326 517 -6 328 245 173 34 chrY 221601 221866 -51291718 - L1ME LINE L1 -319 5802 5473 1721 188 0 10 chrY 221866 222169 -51291415 - AluSx SINE Alu -12 300 1 328 245 173 34 chrY 222169 222271 -51291313 - L1ME LINE L1 -648 5473 5387 261 0 0 0 chrY 222301 222330 -51291254 + (TG)n Simple_repeat Simple_repeat 2 30 0 1166 215 0 69 chrY 222334 222622 -51290962 - AluJo SINE Alu -44 268 1 21 0 0 0 chrY 222645 222666 -51290918 + AT_rich Low_complexity Low_complexity 1 21 0 293 121 0 17 chrY 222695 222753 -51290831 - Alu SINE Alu 0 302 246 1557 160 3 78 chrY 222761 223092 -51290492 - AluJb SINE Alu -6 306 1 506 181 20 11 chrY 223093 223264 -51290320 - L1M4 LINE L1 -373 5783 5516 341 252 0 3 chrY 223422 223581 -51290003 + HsTC2 DNA Tc2 2 208 -1690 1723 145 30 46 chrY 223653 223956 -51289628 - AluSg SINE Alu -12 298 1 716 269 67 34 chrY 224142 224440 -51289144 + HsTC2 DNA Tc2 1273 1756 -142 418 278 121 64 chrY 224578 224859 -51288725 - L1M4 LINE L1 -2040 4106 3810 2140 117 10 0 chrY 225103 225412 -51288172 - AluSx SINE Alu 0 312 1 207 0 0 0 chrY 225828 225851 -51287733 + (TCCCC)n Simple_repeat Simple_repeat 4 26 0 1378 168 45 62 chrY 225851 226142 -51287442 - AluSx SINE Alu -26 286 1 22 35 0 0 chrY 226400 226429 -51287155 + AT_rich Low_complexity Low_complexity 1 29 0 842 138 0 15 chrY 226486 226616 -51286968 - FLAM_C SINE Alu -5 128 1 22 0 0 0 chrY 227058 227080 -51286504 + AT_rich Low_complexity Low_complexity 1 22 0 1892 102 6 70 chrY 227081 227396 -51286188 + AluSq SINE Alu 1 295 -18 274 309 108 0 chrY 228601 228740 -51284844 + MIR SINE MIR 83 236 -26 330 235 104 17 chrY 228920 229035 -51284549 + L1M4 LINE L1 4481 4605 -1541 1025 215 70 0 chrY 229280 229494 -51284090 - AluJo SINE Alu -77 235 7 1585 203 17 0 chrY 229503 229799 -51283785 - AluJb SINE Alu -11 301 1 1412 199 3 59 chrY 229917 230239 -51283345 + AluJb SINE Alu 2 305 -7 216 238 0 0 chrY 230241 230283 -51283301 + (CA)n Simple_repeat Simple_repeat 1 42 0 288 182 0 0 chrY 230373 230417 -51283167 - AluSp SINE Alu -130 173 130 1420 190 10 24 chrY 230421 230716 -51282868 - AluJb SINE Alu -21 291 1 2188 91 3 36 chrY 232286 232594 -51280990 - AluY SINE Alu -13 298 1 23 33 0 0 chrY 232746 232776 -51280808 + AT_rich Low_complexity Low_complexity 1 30 0 953 190 0 6 chrY 233065 233228 -51280356 + AluJo SINE Alu 121 282 -30 1381 186 41 30 chrY 233425 233720 -51279864 + AluJo SINE Alu 2 299 -3 489 216 24 24 chrY 233950 234075 -51279509 + FLAM_A SINE Alu 12 136 -6 1468 265 74 51 chrY 234620 234768 -51278816 - MLT1E2 LTR MaLR 0 626 483 1225 228 10 54 chrY 234768 235113 -51278471 + AluJo SINE Alu 1 332 0 1468 265 74 51 chrY 235113 235574 -51278010 - MLT1E2 LTR MaLR -143 483 2 760 291 101 55 chrY 235768 236205 -51277379 - MLT1E2-int LTR MaLR -223 1148 692 318 190 25 38 chrY 236297 236455 -51277129 + CT-rich Low_complexity Low_complexity 3 158 0 2679 126 25 25 chrY 236573 237010 -51276574 - MER1A DNA MER1_type 0 529 93 525 274 59 14 chrY 237070 237289 -51276295 - MLT1E2-int LTR MaLR -781 590 362 539 242 83 83 chrY 237291 237532 -51276052 - MLT1E2-int LTR MaLR -957 414 171 1721 181 17 10 chrY 237532 237830 -51275754 - AluJo SINE Alu -12 300 1 539 242 83 83 chrY 237830 237890 -51275694 - MLT1E2-int LTR MaLR -1199 172 113 387 137 27 14 chrY 238000 238073 -51275511 - MLT1E2-int LTR MaLR -1297 74 1 974 285 113 57 chrY 238081 238646 -51274938 - MLT1E2 LTR MaLR -9 617 21 266 246 0 0 chrY 239375 239432 -51274152 + AluJ/FLAM SINE Alu 36 92 -210 398 245 53 60 chrY 239675 239826 -51273758 - MIR SINE MIR -41 221 72 219 139 0 0 chrY 240216 240252 -51273332 + (T)n Simple_repeat Simple_repeat 1 36 0 265 155 17 17 chrY 240258 240316 -51273268 - HY3 scRNA scRNA -7 94 37 189 294 0 0 chrY 240487 240538 -51273046 + MIR SINE MIR 81 131 -77 243 254 0 0 chrY 241162 241233 -51272351 + T-rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chrY 243250 243271 -51270313 + AT_rich Low_complexity Low_complexity 1 21 0 542 276 142 20 chrY 244867 245121 -51268463 + L1M4 LINE L1 9 293 -6249 1312 217 38 0 chrY 245130 245393 -51268191 + AluJo SINE Alu 15 287 -25 3117 246 83 39 chrY 245440 245504 -51268080 + L1M4 LINE L1 321 381 -6265 1722 153 0 51 chrY 245504 245817 -51267767 - AluSx SINE Alu -11 301 5 3117 246 83 39 chrY 245817 247130 -51266454 + L1M4 LINE L1 381 1769 -4877 222 37 0 0 chrY 247131 247158 -51266426 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 459 147 0 0 chrY 247195 247270 -51266314 - AluS SINE Alu -15 296 222 1890 196 103 50 chrY 247275 247817 -51265767 + L1MB7 LINE L1 5557 6127 -57 2150 125 0 0 chrY 247933 248229 -51265355 - AluSx SINE Alu -14 298 3 641 261 111 17 chrY 248267 248621 -51264963 + HAL1b LINE L1 425 781 -567 2254 86 3 13 chrY 248676 248977 -51264607 - AluY SINE Alu -11 300 3 242 282 58 39 chrY 249109 249212 -51264372 - L2 LINE L2 -2 3311 3207 811 310 268 28 chrY 249426 250213 -51263371 - L2 LINE L2 -1323 1991 1016 242 330 86 25 chrY 251396 251593 -51261991 + L2 LINE L2 2531 2739 -575 21 0 0 0 chrY 252020 252041 -51261543 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 252062 252083 -51261501 + AT_rich Low_complexity Low_complexity 1 21 0 1686 164 41 7 chrY 252153 252445 -51261139 + AluSx SINE Alu 1 302 -10 537 273 29 14 chrY 253175 253314 -51260270 + MIR SINE MIR 51 191 -71 1542 190 56 0 chrY 253430 253714 -51259870 - AluSx SINE Alu -12 300 1 325 0 0 0 chrY 254532 254568 -51259016 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1881 131 11 11 chrY 254568 254850 -51258734 - AluSx SINE Alu -30 282 1 1558 207 0 23 chrY 255033 255333 -51258251 + AluJo SINE Alu 1 293 -19 2926 73 0 3 chrY 256045 256426 -51257158 - L1PA8 LINE L1 -14 6158 5779 2298 90 0 17 chrY 256475 256775 -51256809 - AluSc SINE Alu -14 295 1 21 0 0 0 chrY 257007 257028 -51256556 + AT_rich Low_complexity Low_complexity 1 21 0 2493 79 0 16 chrY 257261 257577 -51256007 + AluY SINE Alu 1 311 0 2142 126 10 10 chrY 257865 258175 -51255409 + AluSx SINE Alu 1 310 -2 21 0 0 0 chrY 262824 262845 -51250739 + AT_rich Low_complexity Low_complexity 1 21 0 1620 184 3 32 chrY 263184 263499 -51250085 - AluJo SINE Alu -1 311 6 389 221 58 0 chrY 263716 263820 -51249764 - L1MB5 LINE L1 -11 6163 6054 30 0 0 0 chrY 264070 264100 -51249484 + AT_rich Low_complexity Low_complexity 1 30 0 413 254 27 18 chrY 264195 264305 -51249279 + MER5A DNA MER1_type 24 134 -55 671 180 225 4 chrY 264308 264552 -51249032 - L1MB2 LINE L1 -4 6167 5870 * 2855 242 70 68 chrY 264549 264638 -51248946 - L1M4c LINE L1 -2054 4372 4285 2026 136 3 0 chrY 264638 264933 -51248651 + AluSx SINE Alu 1 296 -16 1674 177 0 24 chrY 264938 265253 -51248331 + AluSx SINE Alu 3 310 0 2855 242 70 68 chrY 265253 265459 -51248125 - L1M4c LINE L1 -2144 4282 4078 2032 136 3 16 chrY 265459 265768 -51247816 - AluSq SINE Alu -8 305 1 1954 137 3 45 chrY 265778 266092 -51247492 - AluSx SINE Alu -11 301 1 2855 242 70 68 chrY 266092 266215 -51247369 - L1M4c LINE L1 -2356 4070 3949 1330 230 42 11 chrY 266215 266498 -51247086 - AluJo SINE Alu -20 292 1 2855 242 70 68 chrY 266498 266615 -51246969 - L1M4c LINE L1 -2477 3949 3834 1624 202 14 3 chrY 266615 266966 -51246618 - L1PA16 LINE L1 -14 6152 5798 2855 242 70 68 chrY 266966 267128 -51246456 - L1M4c LINE L1 -2592 3834 3674 1928 141 17 7 chrY 267128 267419 -51246165 - AluSx SINE Alu -18 294 1 2855 242 70 68 chrY 267419 267631 -51245953 - L1M4c LINE L1 -2752 3674 3464 2069 102 6 67 chrY 267631 267946 -51245638 - AluY SINE Alu -15 296 1 2855 242 70 68 chrY 267946 268215 -51245369 - L1M4c LINE L1 -2962 3464 3197 491 258 0 23 chrY 268215 268343 -51245241 - FLAM_A SINE Alu -8 125 1 2855 242 70 68 chrY 268343 268791 -51244793 - L1M4c LINE L1 -3229 3197 2751 9150 176 28 11 chrY 268791 269105 -51244479 - L1PA13 LINE L1 -4 6159 5852 2288 121 0 0 chrY 269105 269412 -51244172 - AluSg SINE Alu -3 307 1 9150 176 28 11 chrY 269412 269913 -51243671 - L1PA13 LINE L1 -311 5852 5361 2419 89 0 3 chrY 269913 270215 -51243369 - AluY SINE Alu -10 301 1 9150 176 28 11 chrY 270215 272025 -51241559 - L1PA13 LINE L1 -802 5361 3479 2855 242 70 68 chrY 272025 272220 -51241364 - L1M4c LINE L1 -3675 2751 2523 195 129 0 0 chrY 272298 272329 -51241255 + (T)n Simple_repeat Simple_repeat 1 31 0 1727 184 21 0 chrY 272344 272632 -51240952 - AluSx SINE Alu -12 300 7 645 186 108 44 chrY 272655 272950 -51240634 - L1M4c LINE L1 -3979 2449 2136 582 208 26 3 chrY 273010 273183 -51240401 - L1M4c LINE L1 -4707 1721 1539 251 306 22 30 chrY 273210 273344 -51240240 - L1M4c LINE L1 -6008 349 217 260 171 26 118 chrY 273407 273483 -51240101 + MER5A DNA MER1_type 121 189 0 2177 133 0 3 chrY 273577 273885 -51239699 + AluSx SINE Alu 1 307 -5 229 311 0 0 chrY 274418 274492 -51239092 + (TATG)n Simple_repeat Simple_repeat 3 76 0 928 147 179 62 chrY 274705 274929 -51238655 - AluJb SINE Alu -54 258 9 399 188 134 0 chrY 274973 275085 -51238499 - L1 LINE L1 -1286 4860 4734 3391 196 57 82 chrY 275640 276340 -51237244 - L1 LINE L1 -1913 4233 3491 493 191 0 0 chrY 276340 276424 -51237160 - AluJb SINE Alu -17 295 212 3391 196 57 82 chrY 276424 276885 -51236699 - L1 LINE L1 -2655 3491 3020 2619 207 52 3 chrY 276898 277532 -51236052 + L1MA7 LINE L1 5615 6279 -12 359 218 0 0 chrY 277533 277620 -51235964 + L1MB2 LINE L1 6051 6137 -34 3867 129 25 134 chrY 277759 279308 -51234276 - pTR5 LTR ERV1 0 2606 1524 548 160 109 51 chrY 279761 279917 -51233667 + MER65A LTR ERV1 2 166 -279 1991 173 70 2 chrY 280032 280431 -51233153 - MSTA LTR MaLR -2 426 1 943 174 26 10 chrY 280449 280759 -51232825 + MER65A LTR ERV1 166 445 0 502 145 13 0 chrY 280830 280906 -51232678 - AluS SINE Alu -230 82 6 591 259 112 0 chrY 280926 281212 -51232372 + L1MB2 LINE L1 4105 4422 -1724 1753 164 7 14 chrY 281214 281506 -51232078 - AluSp SINE Alu -22 291 2 2072 203 46 5 chrY 281506 282467 -51231117 + L1MB2 LINE L1 5121 6163 -8 2675 148 93 22 chrY 282803 283359 -51230225 + LTR4 LTR ERV1 1 596 0 12080 160 55 21 chrY 283359 285585 -51227999 + HERV3 LTR ERV1 2 2302 -6124 1819 252 5 2 chrY 285598 286022 -51227562 + HERV3 LTR ERV1 2729 3153 -5273 2271 126 12 0 chrY 286037 286378 -51227206 + HERV3 LTR ERV1 5421 5765 -2661 2311 143 24 7 chrY 286378 286798 -51226786 + LTR4 LTR ERV1 170 596 0 455 315 79 57 chrY 287148 287589 -51225995 + LTR67 LTR ERVL 2 452 -105 283 284 46 0 chrY 287716 287825 -51225759 - LTR33 LTR ERVL -41 480 367 420 311 74 26 chrY 288090 288402 -51225182 + LTR40b LTR ERVL 135 461 -1 453 291 97 0 chrY 288461 288657 -51224927 - LTR33 LTR ERVL -306 215 1 6806 204 149 15 chrY 288959 290507 -51223077 - MER52A LTR ERV1 0 1755 1 516 206 41 0 chrY 290551 290648 -51222936 + AluJ/FLAM SINE Alu 1 101 -211 27 49 0 0 chrY 291500 291541 -51222043 + AT_rich Low_complexity Low_complexity 1 41 0 432 258 55 73 chrY 291914 292352 -51221232 - L1MC5 LINE L1 -368 7593 7164 379 219 0 0 chrY 292375 292457 -51221127 + MER45A DNA AcHobo 97 178 0 2603 133 36 2 chrY 292756 293200 -51220384 - MER4E-int LTR ERV1 -6299 459 1 4791 104 33 13 chrY 293200 293751 -51219833 - MER4E LTR ERV1 0 766 195 1607 161 8 4 chrY 293751 294006 -51219578 + AluY SINE Alu 39 294 -17 4791 104 33 13 chrY 294006 294205 -51219379 - MER4E LTR ERV1 -571 195 1 1221 201 21 61 chrY 294250 294579 -51219005 - LTR62 LTR ERVK -403 316 1 2248 102 0 3 chrY 294779 295082 -51218502 - AluY SINE Alu -9 302 1 252 167 0 0 chrY 295114 295162 -51218422 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 230 158 18 35 chrY 295184 295241 -51218343 - LTR56 LTR ERV1 -381 64 9 2485 195 46 20 chrY 295342 295933 -51217651 - MER4B LTR ERV1 -4 606 1 410 159 53 61 chrY 296026 296158 -51217426 - MER4B-int LTR ERV1 -151 4972 4842 383 145 0 0 chrY 296237 296299 -51217285 - MER4A LTR ERV1 0 664 603 1731 89 12 0 chrY 296299 296558 -51217026 - L1P LINE L1 -1332 4814 4553 1808 102 0 37 chrY 296558 296852 -51216732 - L1P LINE L1 -2229 3917 3635 3528 99 25 14 chrY 296855 297419 -51216165 - L1P LINE L1 -1635 4511 3942 1581 205 7 13 chrY 297613 297916 -51215668 - AluSx SINE Alu -11 301 1 1896 157 14 0 chrY 297956 298250 -51215334 - AluSq SINE Alu -14 299 2 1227 70 0 64 chrY 299550 299737 -51213847 - AluY SINE Alu -24 287 113 3386 160 56 3 chrY 299783 300395 -51213189 - LTR9B LTR ERV1 0 644 1 2388 69 3 31 chrY 300906 301226 -51212358 + AluY SINE Alu 1 311 0 880 168 125 87 chrY 302299 302620 -51210964 - LTR56 LTR ERV1 -108 337 5 203 269 177 28 chrY 302799 302940 -51210644 - MIR SINE MIR -34 228 67 2034 193 7 7 chrY 303002 303452 -51210132 - L1PA13 LINE L1 -4590 2197 1748 591 115 10 10 chrY 303450 303554 -51210030 - L1PA13 LINE L1 -6625 162 59 * 3883 142 29 5 chrY 303557 304203 -51209381 - PABL_B LTR ERV1 -5 662 1 261 218 0 0 chrY 304204 304259 -51209325 - L1PA13 LINE L1 -6732 55 1 1988 265 89 44 chrY 304437 304857 -51208727 - L1 LINE L1 -2012 5553 5154 2124 120 0 25 chrY 304857 305173 -51208411 - AluSc SINE Alu -1 308 1 1988 265 89 44 chrY 305173 305283 -51208301 - L1 LINE L1 -2411 5154 5050 1755 163 11 0 chrY 305283 305559 -51208025 - AluSx SINE Alu -33 279 1 1988 265 89 44 chrY 305559 306838 -51206746 - L1 LINE L1 -2515 5050 3653 24 85 0 0 chrY 306868 306927 -51206657 + AT_rich Low_complexity Low_complexity 1 59 0 41862 65 3 2 chrY 307219 313361 -51200223 - L1PA6 LINE L1 -1 6153 3 10949 179 57 10 chrY 313362 315546 -51198038 - L1 LINE L1 -4220 3345 1060 841 153 6 6 chrY 315552 315715 -51197869 + CT-rich Low_complexity Low_complexity 3 165 0 852 194 19 0 chrY 315718 315878 -51197706 - AluSg/x SINE Alu -5 307 145 581 214 40 0 chrY 316493 316619 -51196965 - MLT1A1 LTR MaLR 0 365 235 1218 211 146 44 chrY 317519 317931 -51195653 + MSTB2 LTR MaLR 4 457 0 216 298 160 0 chrY 317948 318042 -51195542 - MIR SINE MIR -66 196 88 1743 167 3 16 chrY 318168 318474 -51195110 - AluSx SINE Alu 0 312 11 214 273 0 0 chrY 318559 318603 -51194981 - MER5B DNA MER1_type -1 177 134 909 203 5 0 chrY 318612 318799 -51194785 + L1PA15 LINE L1 5972 6159 -6 5413 134 25 17 chrY 318799 319727 -51193857 + L1MA2 LINE L1 5369 6303 -1 24 32 0 0 chrY 319787 319818 -51193766 + AT_rich Low_complexity Low_complexity 1 31 0 1967 154 31 58 chrY 319853 320301 -51193283 + LTR19A LTR ERV1 1 436 -50 1536 142 3 75 chrY 320301 320583 -51193001 - AluJb SINE Alu -36 276 15 901 333 23 26 chrY 320723 321150 -51192434 - LTR16B LTR ERVL -2 462 37 254 232 18 0 chrY 321277 321333 -51192251 + MLT1J LTR MaLR 110 166 -345 183 80 0 0 chrY 321560 321585 -51191999 + (A)n Simple_repeat Simple_repeat 1 25 0 366 145 0 0 chrY 321587 321649 -51191935 + LTR19A LTR ERV1 425 486 0 1843 171 7 0 chrY 321877 322170 -51191414 - AluSx SINE Alu -17 295 1 210 37 0 0 chrY 322483 322510 -51191074 + (TTG)n Simple_repeat Simple_repeat 1 27 0 683 268 145 11 chrY 323044 323313 -51190271 - MER2 DNA MER2_type -1 344 40 536 241 96 8 chrY 323627 323816 -51189768 + L1MB4 LINE L1 5907 6120 -60 942 242 33 5 chrY 323820 324031 -51189553 + AluJo SINE Alu 78 294 -18 2655 236 64 70 chrY 324123 325541 -51188043 - L1MD1 LINE L1 -10 6232 4822 185 333 16 57 chrY 325580 325703 -51187881 + MIR SINE MIR 43 160 -102 213 121 0 0 chrY 327184 327217 -51186367 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 * 973 199 106 43 chrY 327216 327679 -51185905 - AluJo SINE Alu 0 493 13 10078 150 29 5 chrY 327707 330280 -51183304 - L1PA10 LINE L1 -3 6165 3551 15113 156 29 47 chrY 330284 336854 -51176730 - L1PB1 LINE L1 -278 6589 127 180 392 65 30 chrY 336922 337154 -51176430 - L2 LINE L2 -582 2732 2493 38 39 0 0 chrY 337265 337317 -51176267 + AT_rich Low_complexity Low_complexity 1 52 0 308 298 33 8 chrY 338031 338152 -51175432 + L2 LINE L2 2934 3057 -215 217 132 26 0 chrY 338799 338837 -51174747 - L2 LINE L2 -3 3310 3272 3923 214 55 33 chrY 341512 342005 -51171579 - L1MC2 LINE L1 -2 6342 5861 2412 71 13 0 chrY 342005 342314 -51171270 - AluSp SINE Alu 0 313 1 3923 214 55 33 chrY 342314 343506 -51170078 - L1MC2 LINE L1 -483 5861 4617 24 0 0 0 chrY 343550 343574 -51170010 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chrY 344042 344071 -51169513 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chrY 344118 344143 -51169441 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chrY 344155 344179 -51169405 + (TG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrY 344717 344748 -51168836 + AT_rich Low_complexity Low_complexity 1 31 0 234 62 0 0 chrY 345379 345411 -51168173 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 352 100 0 0 chrY 345418 345468 -51168116 - Alu SINE Alu -27 274 225 942 168 7 0 chrY 345468 345617 -51167967 - AluSq SINE Alu -160 153 4 2472 57 0 7 chrY 346421 346719 -51166865 - AluY SINE Alu -15 296 1 1030 281 44 19 chrY 346757 347074 -51166510 + L1MCc LINE L1 892 1216 -5207 324 265 144 8 chrY 347136 347268 -51166316 + Zaphod DNA AcHobo 3854 4003 -28 266 276 80 35 chrY 347549 347748 -51165836 - L1M4 LINE L1 -611 5573 5366 258 253 63 25 chrY 347759 347838 -51165746 - L2 LINE L2 -1 3312 3231 1111 267 48 23 chrY 349364 349805 -51163779 - MLT1H LTR MaLR 0 549 75 3591 222 23 15 chrY 349816 350890 -51162694 + L1P4 LINE L1 4398 5476 -689 645 124 10 0 chrY 350930 351027 -51162557 + AluY SINE Alu 95 192 -119 2430 137 15 33 chrY 351028 351455 -51162129 - L1PA16 LINE L1 -261 5905 5485 2373 96 3 0 chrY 351455 351767 -51161817 - AluSp SINE Alu 0 313 1 2430 137 15 33 chrY 351767 351793 -51161791 - L1PA16 LINE L1 -681 5485 5460 1517 97 0 0 chrY 351793 352007 -51161577 + L1PA14 LINE L1 5942 6157 -4 984 285 40 14 chrY 352135 352559 -51161025 - L1M4 LINE L1 -2448 3698 3264 192 40 0 0 chrY 352616 352641 -51160943 + (ATG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chrY 352695 352718 -51160866 + AT_rich Low_complexity Low_complexity 1 23 0 230 303 0 15 chrY 352756 352822 -51160762 - MIR SINE MIR -165 97 33 804 198 48 52 chrY 352867 353119 -51160465 + pTR5 LTR ERV1 743 993 -1445 3949 118 72 35 chrY 353186 353848 -51159736 + LTR12 LTR ERV1 1 687 -1 1656 155 11 11 chrY 353928 354199 -51159385 + AluSx SINE Alu 1 271 -41 277 118 43 21 chrY 354201 354294 -51159290 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 370 296 91 26 chrY 354776 355006 -51158578 - L1ME4a LINE L1 -179 5942 5698 222 37 0 0 chrY 355008 355035 -51158549 + (TG)n Simple_repeat Simple_repeat 2 28 0 1608 186 13 13 chrY 355239 355550 -51158034 - AluJo SINE Alu -1 311 1 30 27 0 0 chrY 355609 355646 -51157938 + AT_rich Low_complexity Low_complexity 1 37 0 1858 183 70 79 chrY 355996 356555 -51157029 - MLT2B3 LTR ERVL 0 554 1 266 255 106 21 chrY 356987 357081 -51156503 + MIR SINE MIR 124 225 -37 321 201 43 30 chrY 358376 358540 -51155044 + (TA)n Simple_repeat Simple_repeat 2 167 0 210 208 0 0 chrY 358546 358594 -51154990 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 1491 157 36 25 chrY 358705 358985 -51154599 + AluJo SINE Alu 12 294 -18 1029 194 16 42 chrY 359167 359389 -51154195 + L1MDa LINE L1 1106 1319 -5221 1875 218 5 20 chrY 359389 359789 -51153795 + MSTD LTR MaLR 3 396 0 1029 194 16 42 chrY 359789 359875 -51153709 + L1MDa LINE L1 1319 1406 -5134 315 202 36 24 chrY 359895 359979 -51153605 + MER45C DNA AcHobo 528 612 -341 1050 251 31 0 chrY 360193 360616 -51152968 - L1M4 LINE L1 -2961 3185 2750 698 273 80 0 chrY 360623 360861 -51152723 + L1MDa LINE L1 2931 3187 -3353 201 175 0 0 chrY 360950 360990 -51152594 + (TA)n Simple_repeat Simple_repeat 1 40 0 486 170 98 45 chrY 360992 361104 -51152480 + Tigger7 DNA MER2_type 2370 2487 0 465 253 19 6 chrY 361104 361266 -51152318 - L1MCa LINE L1 -3712 2714 2551 424 171 0 0 chrY 361291 361379 -51152205 - L1MA4 LINE L1 0 6300 6213 613 189 12 30 chrY 361379 361531 -51152053 - L1MCa LINE L1 -3892 2536 2414 796 266 40 0 chrY 361774 361951 -51151633 + L1PA13 LINE L1 1 184 -6603 2240 232 18 11 chrY 361963 362510 -51151074 + L1PA13 LINE L1 1728 2278 -4509 281 132 0 19 chrY 362549 362602 -51150982 + (TA)n Simple_repeat Simple_repeat 1 52 0 231 186 0 17 chrY 362603 362662 -51150922 - L1MCa LINE L1 -4363 2063 2006 231 186 0 17 chrY 362687 362746 -51150838 - L1MCa LINE L1 -4363 2063 2006 188 108 0 27 chrY 362750 362787 -51150797 + (TA)n Simple_repeat Simple_repeat 2 37 0 311 270 0 0 chrY 362787 362861 -51150723 + L1PA13 LINE L1 2376 2449 -4348 5392 144 6 2 chrY 362861 364407 -51149177 + L1PA15 LINE L1 4593 6146 -19 418 343 33 9 chrY 364475 364685 -51148899 - L1M4 LINE L1 -1548 4598 4384 24 0 0 0 chrY 364696 364720 -51148864 + AT_rich Low_complexity Low_complexity 1 24 0 5153 203 16 19 chrY 364808 366952 -51146632 - L1PA15 LINE L1 -16 6149 4020 325 71 0 0 chrY 366946 366988 -51146596 - L1P LINE L1 -972 5174 5133 * 529 263 41 0 chrY 367007 367178 -51146406 + L1M4b LINE L1 1326 1503 -5356 7236 214 17 67 chrY 367213 367943 -51145641 - L1P LINE L1 -1023 5123 4358 1689 168 16 13 chrY 367943 368246 -51145338 - AluJb SINE Alu -4 308 5 7236 214 17 67 chrY 368246 368453 -51145131 - L1P LINE L1 -1788 4358 4142 3858 107 32 11 chrY 368453 369080 -51144504 + MER51C LTR ERV1 1 640 0 7236 214 17 67 chrY 369080 370336 -51143248 - L1P LINE L1 -2004 4142 3039 2083 297 69 25 chrY 370341 371718 -51141866 - L1M4b LINE L1 -5331 1528 12 1973 122 20 3 chrY 372113 372416 -51141168 + AluSg SINE Alu 1 308 -2 305 369 20 30 chrY 372951 373149 -51140435 + L1 LINE L1 3631 3826 -2320 418 195 35 44 chrY 373484 373597 -51139987 + Charlie4 DNA MER1_type 1835 1946 -15 417 331 24 52 chrY 373609 373857 -51139727 + LTR33 LTR ERVL 260 500 -21 944 313 74 18 chrY 375126 375516 -51138068 - L2 LINE L2 -447 2867 2456 207 204 0 0 chrY 375604 375648 -51137936 + GA-rich Low_complexity Low_complexity 3 46 0 514 179 28 9 chrY 375811 375917 -51137667 - L1MA1 LINE L1 -4 6298 6191 809 287 35 8 chrY 376116 376370 -51137214 - L2 LINE L2 -853 2461 2201 189 0 0 0 chrY 376742 376763 -51136821 + (CA)n Simple_repeat Simple_repeat 2 22 0 2942 115 23 6 chrY 378467 378947 -51134637 - L1MA3 LINE L1 0 6305 5818 362 85 17 0 chrY 379419 379478 -51134106 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2122 245 32 14 chrY 379480 380009 -51133575 - MLT2B3 LTR ERVL -19 507 1 1077 95 25 0 chrY 380254 380412 -51133172 - L1MA3 LINE L1 0 6305 6144 225 94 0 0 chrY 380413 380445 -51133139 + L1MA3 LINE L1 5929 5960 -345 1523 197 42 52 chrY 380627 381033 -51132551 - MER39 LTR ERV1 0 707 306 1387 173 54 45 chrY 381234 381454 -51132130 - MER44D DNA MER2_type -1883 608 391 213 39 0 0 chrY 381454 381480 -51132104 + (TC)n Simple_repeat Simple_repeat 1 26 0 1387 173 54 45 chrY 381480 381594 -51131990 - MER44D DNA MER2_type -2100 391 1 541 176 11 0 chrY 382190 382281 -51131303 + MLT1D LTR MaLR 1 92 -413 247 303 55 9 chrY 382441 382550 -51131034 - L1ME LINE L1 -477 5644 5531 324 0 0 0 chrY 382662 382698 -51130886 + (TG)n Simple_repeat Simple_repeat 2 37 0 677 243 87 0 chrY 382763 382936 -51130648 + MER20 DNA MER1_type 31 218 -1 238 136 17 17 chrY 383313 383372 -51130212 + (TG)n Simple_repeat Simple_repeat 2 60 0 532 297 25 29 chrY 383556 383808 -51129776 - L1ME3A LINE L1 -290 5880 5669 329 259 133 7 chrY 383824 383959 -51129625 - Charlie2a DNA MER1_type 0 2862 2711 * 467 247 77 12 chrY 383955 384125 -51129459 - Charlie2a DNA MER1_type -1200 1662 1482 399 325 81 10 chrY 384337 384534 -51129050 - Charlie2a DNA MER1_type -2555 307 97 616 295 89 47 chrY 384796 385199 -51128385 - LTR38 LTR ERV1 0 556 137 339 338 92 29 chrY 385258 385978 -51127606 - L1ME LINE L1 -749 5397 4633 348 309 65 22 chrY 386044 386458 -51127126 - L1ME LINE L1 -3158 2988 2557 404 236 11 0 chrY 386513 386602 -51126982 - Tigger5 DNA MER2_type 0 2323 2234 362 233 0 0 chrY 386653 386726 -51126858 - Tigger5 DNA MER2_type 0 2323 2251 240 284 0 0 chrY 386745 386819 -51126765 + (TA)n Simple_repeat Simple_repeat 2 75 0 258 278 0 0 chrY 386900 386990 -51126594 - L1ME LINE L1 -3783 2363 2274 22 56 0 0 chrY 387695 387731 -51125853 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chrY 388148 388186 -51125398 + AT_rich Low_complexity Low_complexity 1 38 0 9287 207 15 18 chrY 388535 389799 -51123785 + L1P LINE L1 2304 3560 -2586 255 103 0 0 chrY 389799 389838 -51123746 + (TG)n Simple_repeat Simple_repeat 2 40 0 9287 207 15 18 chrY 389838 390630 -51122954 + L1P LINE L1 3560 4353 -1793 439 319 79 37 chrY 390799 391370 -51122214 - L1ME3A LINE L1 -300 5870 5276 255 255 125 25 chrY 391407 391607 -51121977 - L1ME3A LINE L1 -913 5233 5014 266 91 0 55 chrY 391622 391677 -51121907 - AluSp/q SINE Alu -5 298 247 2206 123 0 0 chrY 391941 392250 -51121334 - AluSx SINE Alu -3 309 1 757 231 72 57 chrY 392860 393218 -51120366 + MLT2B2 LTR ERVL 1 453 -62 476 26 65 0 chrY 393218 393295 -51120289 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 757 231 72 57 chrY 393295 393359 -51120225 + MLT2B2 LTR ERVL 453 515 0 315 258 88 57 chrY 393397 393591 -51119993 - L1ME3A LINE L1 -1664 4482 4283 320 358 95 15 chrY 393889 394163 -51119421 - L1ME3A LINE L1 -1834 4312 4017 267 336 88 15 chrY 394286 394628 -51118956 - L1ME3A LINE L1 -2227 3919 3553 443 224 195 29 chrY 394756 395002 -51118582 - L1ME3A LINE L1 -2664 3482 3196 538 259 92 80 chrY 395014 395438 -51118146 + LTR68 LTR ERV1 1 429 -311 423 215 86 57 chrY 395588 395797 -51117787 - L1ME3A LINE L1 -2961 3185 2971 1259 260 34 47 chrY 396101 396313 -51117271 - L1MD2 LINE L1 -2 6357 6144 1909 160 3 6 chrY 396313 396625 -51116959 - AluSx SINE Alu -1 311 1 1259 260 34 47 chrY 396625 396855 -51116729 - L1MD2 LINE L1 -215 6144 5921 555 128 0 0 chrY 396937 397023 -51116561 - L1P4 LINE L1 -523 5638 5553 753 103 8 23 chrY 397033 397303 -51116281 + (TA)n Simple_repeat Simple_repeat 1 266 0 2961 136 12 10 chrY 397303 397804 -51115780 + L1PA14 LINE L1 5658 6159 -2 627 257 229 43 chrY 398073 398353 -51115231 + L1M4b LINE L1 91 422 -6437 527 265 73 0 chrY 398364 398500 -51115084 + L1M4b LINE L1 1130 1275 -5584 2145 273 45 11 chrY 398532 399495 -51114089 - L1MDb LINE L1 -2935 3471 2477 226 176 39 0 chrY 399475 399526 -51114058 + L1MA9 LINE L1 6254 6306 -6 * 1217 255 45 48 chrY 399535 400410 -51113174 - L1MDb LINE L1 -3900 2508 1543 2242 153 50 13 chrY 400433 400898 -51112686 - L1MA3 LINE L1 0 6305 5824 212 158 0 0 chrY 400941 400979 -51112605 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6157 220 49 10 chrY 401057 402439 -51111145 + L1M3 LINE L1 118 1553 -5310 4373 120 1 3 chrY 402438 403094 -51110490 + L1PB2 LINE L1 5380 6034 -117 * 2190 198 34 15 chrY 403101 403944 -51109640 + L1M3 LINE L1 5564 6426 -458 381 287 41 0 chrY 403943 404115 -51109469 - L1MDb LINE L1 -5542 867 663 * 274 335 151 11 chrY 404124 404309 -51109275 - L1MDb LINE L1 -5822 587 377 * 1263 309 60 35 chrY 404295 404859 -51108725 - L1MDb LINE L1 -5810 599 22 350 325 13 44 chrY 404896 405036 -51108548 - L1MEc LINE L1 -3611 2518 2386 1378 259 117 45 chrY 405036 405618 -51107966 - MLT1E2 LTR MaLR -2 624 1 350 325 13 44 chrY 405618 405705 -51107879 - L1MEc LINE L1 -3743 2386 2298 489 334 119 39 chrY 405743 406678 -51106906 - L1MEc LINE L1 -4049 2261 1252 391 267 62 12 chrY 406739 406935 -51106649 - L1MEc LINE L1 -4969 1150 947 23 0 0 0 chrY 406939 406962 -51106622 + AT_rich Low_complexity Low_complexity 1 23 0 362 291 72 66 chrY 407929 408300 -51105284 - L1MEc LINE L1 -5146 989 571 324 308 0 0 chrY 408579 408696 -51104888 - MER103 DNA DNA -48 118 2 231 61 0 0 chrY 408953 408986 -51104598 + (CA)n Simple_repeat Simple_repeat 2 34 0 1310 158 45 17 chrY 410908 411200 -51102384 + L1MA8 LINE L1 5987 6286 -5 1836 134 113 30 chrY 411956 412292 -51101292 + THE1B LTR MaLR 1 364 0 417 208 40 40 chrY 412718 412843 -51100741 + MER112 DNA MER1_type 84 208 -52 22 70 0 0 chrY 413018 413061 -51100523 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chrY 413195 413223 -51100361 + AT_rich Low_complexity Low_complexity 1 28 0 221 327 93 9 chrY 413534 413641 -51099943 + L2 LINE L2 3153 3268 -4 192 150 50 0 chrY 413705 413745 -51099839 + L2 LINE L2 3271 3312 -1 734 239 35 70 chrY 414397 414656 -51098928 - L1ME2 LINE L1 -1 6163 5914 381 275 50 39 chrY 414659 414939 -51098645 - L1ME2 LINE L1 -329 5835 5553 235 364 35 38 chrY 415433 415611 -51097973 + MIR3 SINE MIR 18 167 -41 942 247 56 3 chrY 416829 417181 -51096403 - L1MC3 LINE L1 -201 6143 5742 758 153 0 0 chrY 417191 417315 -51096269 - L1PA15 LINE L1 -3 6162 6039 4387 101 38 0 chrY 417492 418128 -51095456 + HERVL-A2 LTR ERVL 4995 5654 0 429 102 0 0 chrY 418128 418187 -51095397 + MLT2A2 LTR ERVL 1 59 -394 3180 139 5 10 chrY 418187 418748 -51094836 - L1PA15 LINE L1 -386 5779 5220 * 3728 216 29 1 chrY 418745 419550 -51094034 + L1P LINE L1 1831 2657 -3489 556 245 95 15 chrY 419590 419883 -51093701 - MER52A LTR ERV1 -148 894 275 680 257 29 11 chrY 419924 420099 -51093485 - LTR28 LTR ERV1 -842 178 1 1294 245 17 0 chrY 420101 420448 -51093136 + L1P LINE L1 2660 3012 -3134 2007 132 46 34 chrY 421872 422221 -51091363 - THE1B LTR MaLR -11 353 1 9496 137 75 0 chrY 422221 423691 -51089893 - THE1B-int LTR MaLR 0 1580 1 1949 146 36 36 chrY 423691 424054 -51089530 - THE1B LTR MaLR 0 364 2 388 325 34 3 chrY 424133 424273 -51089311 - MIR SINE MIR -63 145 25 183 364 24 73 chrY 424266 424472 -51089112 + L2 LINE L2 2438 2633 -681 * 1168 268 47 14 chrY 424799 425054 -51088530 + L1ME1 LINE L1 4822 5067 -1079 552 100 0 0 chrY 425054 425134 -51088450 + (TA)n Simple_repeat Simple_repeat 1 80 0 1168 268 47 14 chrY 425134 425371 -51088213 + L1ME1 LINE L1 5067 5330 -816 2051 156 43 0 chrY 425379 425726 -51087858 - THE1B LTR MaLR -2 362 1 8356 124 115 40 chrY 425726 427196 -51086388 - THE1B-int LTR MaLR 0 1580 1 2570 123 0 3 chrY 427196 427561 -51086023 - THE1B LTR MaLR 0 364 1 1574 281 78 33 chrY 427565 427901 -51085683 + L1ME1 LINE L1 5333 5652 -514 315 0 0 0 chrY 427901 427936 -51085648 + (CA)n Simple_repeat Simple_repeat 2 36 0 1574 281 78 33 chrY 427936 428378 -51085206 + L1ME1 LINE L1 5652 6146 -20 18128 181 30 15 chrY 428528 436134 -51077450 - L1MA1 LINE L1 0 7721 7 328 350 13 32 chrY 436267 436424 -51077160 - L2 LINE L2 -12 3301 3148 2925 199 24 13 chrY 436424 437043 -51076541 - MSTB-int LTR MaLR -992 659 34 1531 231 81 13 chrY 437062 437456 -51076128 - MSTB LTR MaLR -5 421 1 21 36 0 0 chrY 438118 438146 -51075438 + AT_rich Low_complexity Low_complexity 1 28 0 1146 207 97 60 chrY 438693 439045 -51074539 + MLT1A1 LTR MaLR 1 365 0 1417 239 0 13 chrY 439299 439613 -51073971 + AluJo SINE Alu 1 310 -2 21 57 0 0 chrY 439804 439839 -51073745 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chrY 440133 440184 -51073400 + AT_rich Low_complexity Low_complexity 1 51 0 34 0 0 0 chrY 440681 440715 -51072869 + AT_rich Low_complexity Low_complexity 1 34 0 2262 147 39 0 chrY 440959 441320 -51072264 - THE1C LTR MaLR 0 375 1 8822 136 57 37 chrY 441320 442870 -51070714 - THE1C-int LTR MaLR 0 1580 1 2573 121 5 0 chrY 442870 443243 -51070341 - THE1C LTR MaLR 0 375 1 28 86 0 0 chrY 443789 443859 -51069725 + AT_rich Low_complexity Low_complexity 1 70 0 39 38 0 0 chrY 443937 443990 -51069594 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chrY 444615 444643 -51068941 + AT_rich Low_complexity Low_complexity 1 28 0 1518 218 0 19 chrY 444942 445249 -51068335 - AluJb SINE Alu -9 303 3 2001 127 3 13 chrY 445262 445561 -51068023 - AluSp SINE Alu -17 296 1 8175 204 19 2 chrY 445781 447308 -51066276 - THE1C-int LTR MaLR -98 1553 1 1754 196 132 8 chrY 447308 447686 -51065898 - MSTA LTR MaLR -2 426 2 453 275 92 34 chrY 449124 449714 -51063870 + L1MEc LINE L1 1904 2487 -3728 2660 267 48 13 chrY 449813 450765 -51062819 - L1MB8 LINE L1 -2 6176 5187 3140 181 66 20 chrY 450786 451484 -51062100 - L1MA8 LINE L1 -4 7247 6518 2133 151 109 53 chrY 451498 451566 -51062018 + LOR1a LTR ERV1 1 64 -433 2631 147 95 42 chrY 451566 452145 -51061439 + LTR66 LTR ERVL 1 610 0 2133 151 109 53 chrY 452145 452165 -51061419 + LOR1a LTR ERV1 64 81 -416 2148 118 3 0 chrY 452165 452469 -51061115 - AluSp SINE Alu -8 305 1 2133 151 109 53 chrY 452469 452848 -51060736 + LOR1a LTR ERV1 81 495 -2 858 225 16 5 chrY 452849 453040 -51060544 - L1MA8 LINE L1 -2103 5003 4811 192 77 0 0 chrY 453040 453066 -51060518 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1447 225 0 7 chrY 453068 453352 -51060232 - AluJo SINE Alu -30 282 1 553 162 27 0 chrY 453360 453471 -51060113 - L1MA8 LINE L1 -4977 2053 1940 2433 273 59 15 chrY 453500 454548 -51059036 - L1MB8 LINE L1 -1201 4945 3852 1876 169 14 6 chrY 454612 454956 -51058628 - L1PA15 LINE L1 -3 6813 6467 6910 59 10 2 chrY 454976 456125 -51057459 - L1PA7 LINE L1 -11 6143 4998 9619 226 30 11 chrY 456125 461291 -51052293 - L1PA15 LINE L1 -340 6476 1212 1000 281 59 23 chrY 461305 461968 -51051616 - L1MB8 LINE L1 -2354 3792 3106 1219 206 0 46 chrY 462318 462580 -51051004 + AluJb SINE Alu 1 250 -62 509 259 43 0 chrY 462599 462761 -51050823 + L1MA7 LINE L1 6111 6279 -12 21 0 0 0 chrY 462762 462783 -51050801 + AT_rich Low_complexity Low_complexity 1 21 0 401 308 70 29 chrY 462907 463491 -51050093 + L1MC/D LINE L1 4991 5600 -566 621 235 126 10 chrY 463514 463733 -51049851 - L1MCc LINE L1 -6105 836 68 288 281 79 6 chrY 463840 464004 -51049580 - L1MCc LINE L1 -4458 2483 2308 3229 141 30 20 chrY 464013 464554 -51049030 - MER41A LTR ERV1 -8 546 1 1941 127 27 3 chrY 464554 464854 -51048730 - MER41A-int LTR ERV1 -2 5944 5638 * 10164 139 40 25 chrY 464851 467610 -51045974 - MER41A-int LTR ERV1 -462 4553 2167 681 158 0 0 chrY 467609 467723 -51045861 - MER41A-int LTR ERV1 -3932 2014 1901 * 2453 160 27 13 chrY 467725 468315 -51045269 - MER41A-int LTR ERV1 -4231 3585 648 * 5262 140 47 6 chrY 468298 469122 -51044462 - MER41B-int LTR ERV1 -5087 859 2 1334 127 5 0 chrY 469123 469320 -51044264 - MER41B LTR ERV1 0 635 438 4464 77 106 2 chrY 469364 469987 -51043597 + LTR12 LTR ERV1 1 688 0 21 0 0 0 chrY 469994 470015 -51043569 + AT_rich Low_complexity Low_complexity 1 21 0 1114 218 306 10 chrY 470047 470442 -51043142 + MER101B LTR ERV1 8 519 -51 192 158 0 0 chrY 470584 470622 -51042962 + (CA)n Simple_repeat Simple_repeat 2 39 0 247 170 0 0 chrY 470641 470688 -51042896 - L1MCc LINE L1 -5104 1837 1791 859 293 90 47 chrY 470714 471389 -51042195 - L1MCc LINE L1 -4903 1520 817 336 288 37 122 chrY 471577 471980 -51041604 - L1MCc LINE L1 -5629 793 84 1748 252 103 18 chrY 472107 473298 -51040286 - L1MC4 LINE L1 -130 7912 6472 2260 105 0 3 chrY 474067 474363 -51039221 + AluSx SINE Alu 1 295 -17 1723 280 70 51 chrY 474537 475492 -51038092 + L1MC2 LINE L1 69 986 -5578 2055 140 24 3 chrY 475492 475828 -51037756 + MER61A LTR ERV1 1 343 0 1723 280 70 51 chrY 475828 476639 -51036945 + L1MC2 LINE L1 986 1781 -4783 1197 245 89 61 chrY 476646 477407 -51036177 + L1MC2 LINE L1 4222 4977 -1587 506 290 94 27 chrY 477458 477786 -51035798 - LTR43 LTR ERV1 -66 536 187 1274 248 55 30 chrY 478140 478669 -51034915 + L1MC2 LINE L1 4975 5516 -1048 1978 234 27 12 chrY 478672 479151 -51034433 + L1MC2 LINE L1 6275 6760 -2 838 216 16 0 chrY 479152 479342 -51034242 + L1MC3 LINE L1 5823 6015 -1770 342 235 79 36 chrY 479367 479623 -51033961 - L1ME LINE L1 -391 5773 5403 550 260 65 62 chrY 479757 479839 -51033745 - L1ME LINE L1 -875 5271 5191 186 43 0 0 chrY 479839 479862 -51033722 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2024 95 26 4 chrY 479864 480137 -51033447 - AluSx SINE Alu -31 281 3 550 260 65 62 chrY 480137 480451 -51033133 - L1ME LINE L1 -955 5191 4871 606 182 31 3 chrY 480507 480661 -51032923 - L1ME LINE L1 -2027 4119 3959 947 143 25 5 chrY 480661 480857 -51032727 + L1MA7 LINE L1 6092 6291 0 210 310 60 20 chrY 481068 481168 -51032416 - MIR SINE MIR -7 255 152 449 299 9 0 chrY 481170 481277 -51032307 + L2 LINE L2 3164 3271 -1 1670 176 71 31 chrY 481323 481647 -51031937 + MER1B DNA MER1_type 1 337 0 255 413 7 7 chrY 481980 482123 -51031461 + MER5B DNA MER1_type 3 145 -33 684 321 69 17 chrY 482155 482501 -51031083 + LTR16A LTR ERVL 46 409 -41 541 291 39 43 chrY 482527 482781 -51030803 + L1MDa LINE L1 17 269 -6271 491 272 0 6 chrY 483005 483185 -51030399 + L1MDa LINE L1 2746 2924 -3616 558 191 21 7 chrY 483190 483331 -51030253 + L1MB8 LINE L1 6017 6159 -19 1534 106 74 0 chrY 483345 483601 -51029983 - L1MA2 LINE L1 0 6304 6030 215 263 162 20 chrY 483704 483803 -51029781 + L2 LINE L2 3189 3301 -12 230 271 24 24 chrY 484065 484150 -51029434 + MLT1L LTR MaLR 1 85 -530 1692 193 21 47 chrY 484221 484646 -51028938 - MLT2D LTR ERVL 0 414 1 21242 224 32 26 chrY 484646 485096 -51028488 - ERVL-D LTR ERVL -7 5757 5311 1023 211 225 0 chrY 485096 485394 -51028190 + MER47A DNA MER2_type 1 365 -1 21242 224 32 26 chrY 485394 488390 -51025194 - ERVL-D LTR ERVL -453 5311 2333 2609 36 10 0 chrY 488390 488698 -51024886 - AluY SINE Alu 0 311 1 21242 224 32 26 chrY 488698 488742 -51024842 - ERVL-D LTR ERVL -3431 2333 2291 1946 116 75 36 chrY 488742 489103 -51024481 + THE1C LTR MaLR 1 375 0 21242 224 32 26 chrY 489103 491231 -51022353 - ERVL-D LTR ERVL -3473 2291 3 288 123 0 92 chrY 491233 491298 -51022286 - ERVL-D LTR ERVL 0 520 462 209 125 0 42 chrY 491309 491357 -51022227 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 437 192 83 67 chrY 491360 491480 -51022104 - MLT2D LTR ERVL -48 366 245 395 259 9 9 chrY 491482 491594 -51021990 + L1M4 LINE L1 4849 4960 -1186 2126 126 3 7 chrY 491600 491909 -51021675 + AluSx SINE Alu 1 308 -4 620 220 163 63 chrY 491917 492249 -51021335 + LTR49-int LTR ERV1 1534 2112 -3834 1154 288 19 6 chrY 492328 492647 -51020937 + LTR49-int LTR ERV1 1908 2230 -4101 447 137 5 257 chrY 492861 492960 -51020624 - MER54A LTR ERVL -491 153 103 1177 65 7 0 chrY 492960 493115 -51020469 - L1MA1 LINE L1 -4 6298 6143 447 137 5 257 chrY 493115 493198 -51020386 - MER54A LTR ERVL -541 103 1 368 232 58 53 chrY 493317 493507 -51020077 + LTR49-int LTR ERV1 1290 1480 -3456 403 266 9 18 chrY 493641 493754 -51019830 + LTR49-int LTR ERV1 3260 3371 -2960 298 288 48 14 chrY 493943 494089 -51019495 + L1PA15-16 LINE L1 3 151 -6712 3618 165 6 40 chrY 494095 494775 -51018809 + L1PB3 LINE L1 5440 6096 -58 1117 126 10 94 chrY 494775 495074 -51018510 + L1PA5 LINE L1 5929 6166 -6 379 155 0 0 chrY 495074 495145 -51018439 + L1PB3 LINE L1 6081 6151 -3 328 145 0 0 chrY 495232 495294 -51018290 + MER39B-int LTR ERV1 2826 2887 -3871 579 243 16 58 chrY 495329 495518 -51018066 + MER39B-int LTR ERV1 6002 6182 -149 941 151 76 12 chrY 495577 495749 -51017835 + MER39B LTR ERV1 3 185 -468 440 217 54 23 chrY 495754 495883 -51017701 - LTR49-int LTR ERV1 -200 6131 5999 261 102 41 20 chrY 495895 495944 -51017640 + MER39B LTR ERV1 191 240 -413 1934 238 124 25 chrY 496031 496682 -51016902 - MER50 LTR ERV1 0 734 19 1902 204 25 10 chrY 496679 497086 -51016498 + MER39 LTR ERV1 295 707 0 * 3087 162 57 18 chrY 497223 497830 -51015754 + LTR29 LTR ERV1 6 653 0 1710 138 11 45 chrY 498466 498813 -51014771 - MER61B LTR ERV1 0 425 1 21 0 0 0 chrY 498870 498891 -51014693 + AT_rich Low_complexity Low_complexity 1 21 0 1824 171 73 14 chrY 498978 499322 -51014262 - THE1B LTR MaLR 0 364 1 11389 97 15 0 chrY 499322 500879 -51012705 - THE1B-int LTR MaLR 0 1580 1 1953 126 66 55 chrY 500879 501261 -51012323 - THE1B LTR MaLR 0 375 1 381 261 85 23 chrY 501329 501459 -51012125 + LTR48 LTR ERV1 1 138 -649 813 206 0 0 chrY 501470 501616 -51011968 - AluJb SINE Alu -18 294 149 2147 136 48 20 chrY 501616 501970 -51011614 - THE1B LTR MaLR 0 364 1 4504 133 17 4 chrY 501977 502670 -51010914 - MER4E LTR ERV1 0 779 78 552 237 17 0 chrY 502670 502788 -51010796 - AluJb SINE Alu -190 122 3 891 261 112 24 chrY 502800 503171 -51010413 + LTR29 LTR ERV1 152 556 -66 2377 220 53 70 chrY 503171 503699 -51009885 + LTR8A LTR ERV1 1 514 -213 2733 213 31 83 chrY 503699 504473 -51009111 - MER50 LTR ERV1 0 734 1 2377 220 53 70 chrY 504473 504684 -51008900 + LTR8A LTR ERV1 514 727 0 341 208 13 13 chrY 504684 504760 -51008824 + LTR49 LTR ERV1 520 595 0 1082 205 82 88 chrY 504761 505169 -51008415 - LTR48 LTR ERV1 -69 718 205 2308 71 0 0 chrY 505169 505452 -51008132 - AluY SINE Alu -2 309 27 1082 205 82 88 chrY 505452 505652 -51007932 - LTR48 LTR ERV1 -582 205 5 323 169 0 26 chrY 505889 505966 -51007618 + (TATG)n Simple_repeat Simple_repeat 2 76 0 191 244 217 78 chrY 506292 506407 -51007177 + MER5A DNA MER1_type 37 167 -22 1133 223 18 0 chrY 506886 507110 -51006474 - MER101B LTR ERV1 -341 229 2 30 69 0 0 chrY 507270 507328 -51006256 + AT_rich Low_complexity Low_complexity 1 58 0 1389 179 33 3 chrY 508133 508435 -51005149 - L1MA6 LINE L1 0 6300 5990 349 277 54 92 chrY 508507 508691 -51004893 + MER5B DNA MER1_type 2 178 0 26 30 0 0 chrY 508702 508735 -51004849 + AT_rich Low_complexity Low_complexity 1 33 0 22 94 0 0 chrY 509066 509130 -51004454 + AT_rich Low_complexity Low_complexity 1 64 0 25 0 0 0 chrY 509177 509202 -51004382 + AT_rich Low_complexity Low_complexity 1 25 0 * 2225 169 3 0 chrY 509202 509586 -51003998 - L1PB3 LINE L1 -3 6151 5767 5232 239 31 22 chrY 509586 512268 -51001316 - L1PBa LINE L1 -4208 2655 877 2195 114 74 0 chrY 512268 512619 -51000965 + MER51B LTR ERV1 1 377 0 5232 239 31 22 chrY 512619 513500 -51000084 - L1PBa LINE L1 -5986 877 5 503 224 10 0 chrY 513708 513806 -50999778 + FLAM_A SINE Alu 10 108 -34 234 363 0 22 chrY 514835 514926 -50998658 - L1MEd LINE L1 -5595 524 436 2013 151 0 3 chrY 514954 515252 -50998332 - AluJb SINE Alu -15 297 1 353 248 8 101 chrY 515339 515468 -50998116 - LTR4-int LTR ERV1 -2130 2061 1945 38693 133 19 13 chrY 515483 521428 -50992156 - LTR4-int LTR ERV1 -696 7730 1754 765 120 0 0 chrY 521428 521536 -50992048 - LTR4-int LTR ERV1 -6565 1861 1754 * 11333 128 32 39 chrY 521511 523419 -50990165 - LTR4-int LTR ERV1 -6531 1895 2 972 160 151 21 chrY 523419 523657 -50989927 - LTR4 LTR ERV1 0 596 328 228 238 12 71 chrY 523754 523838 -50989746 - LTR4 LTR ERV1 -239 357 279 2645 150 15 2 chrY 523939 524393 -50989191 + L1PA15 LINE L1 5705 6164 -1 241 391 23 0 chrY 524556 524643 -50988941 + MER91A DNA MER1_type 2 90 -106 238 200 43 0 chrY 524882 524952 -50988632 + (TA)n Simple_repeat Simple_repeat 2 74 0 309 319 62 12 chrY 525784 525944 -50987640 + L1M4 LINE L1 3605 3772 -2374 1712 218 128 26 chrY 525945 526529 -50987055 + LTR48B LTR ERV1 1 644 0 1981 132 13 26 chrY 526841 527151 -50986433 - AluSx SINE Alu -4 308 3 2021 147 0 0 chrY 527314 527607 -50985977 - AluSg SINE Alu -17 293 1 1193 285 49 35 chrY 527708 527771 -50985813 - L1ME2 LINE L1 -180 5984 5923 2178 109 0 3 chrY 527771 528074 -50985510 + AluY SINE Alu 3 304 -7 1193 285 49 35 chrY 528074 528606 -50984978 - L1ME2 LINE L1 -241 5923 5381 334 268 43 85 chrY 528610 528845 -50984739 - L1ME2 LINE L1 -1080 5066 4842 3049 154 4 53 chrY 528872 529515 -50984069 + MER4B LTR ERV1 1 779 0 229 306 67 67 chrY 529707 529962 -50983622 + L1ME LINE L1 458 712 -5493 21 0 0 0 chrY 529962 529983 -50983601 + AT_rich Low_complexity Low_complexity 1 21 0 1158 173 0 48 chrY 530091 530322 -50983262 + AluJo SINE Alu 86 305 -7 348 261 0 0 chrY 530333 530425 -50983159 + L1ME LINE L1 832 923 -5282 2302 261 65 16 chrY 530466 531683 -50981901 + L1ME LINE L1 2061 3301 -2914 21 36 0 0 chrY 531812 531840 -50981744 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chrY 533095 533122 -50980462 + AT_rich Low_complexity Low_complexity 1 27 0 934 111 0 0 chrY 533562 533697 -50979887 - AluSg/x SINE Alu -2 310 176 1709 122 4 4 chrY 533697 533943 -50979641 - AluSx SINE Alu -66 246 1 2564 122 41 14 chrY 534134 534551 -50979033 - MSTA LTR MaLR 0 428 1 22 0 0 0 chrY 534731 534753 -50978831 + AT_rich Low_complexity Low_complexity 1 22 0 1972 140 69 14 chrY 535561 535911 -50977673 - THE1C LTR MaLR -6 369 1 9750 114 37 36 chrY 535912 537490 -50976094 - THE1C-int LTR MaLR -1 1579 1 1948 140 83 14 chrY 537490 537841 -50975743 - THE1C LTR MaLR 0 375 1 835 379 27 15 chrY 537910 538316 -50975268 - L2 LINE L2 -2896 418 8 2087 164 65 12 chrY 538638 539041 -50974543 + MSTB LTR MaLR 3 426 0 7615 192 32 53 chrY 539048 539227 -50974357 + MSTB-int LTR MaLR 8 189 -1462 1320 156 141 15 chrY 539227 539496 -50974088 + AluSq SINE Alu 1 303 0 7615 192 32 53 chrY 539496 540671 -50972913 + MSTB-int LTR MaLR 189 1323 -328 2348 93 0 0 chrY 540671 540971 -50972613 + AluSg SINE Alu 1 300 -10 7615 192 32 53 chrY 540971 541288 -50972296 + MSTB-int LTR MaLR 1323 1645 -6 1637 198 119 22 chrY 541294 541663 -50971921 + MSTB LTR MaLR 1 405 -21 2684 105 6 0 chrY 543023 543385 -50970199 + THE1B LTR MaLR 1 364 0 441 0 0 0 chrY 543477 543526 -50970058 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 717 12 0 0 chrY 543783 543865 -50969719 + (TTCTC)n Simple_repeat Simple_repeat 3 84 0 1250 144 0 20 chrY 543865 544060 -50969524 - AluSg/x SINE Alu -31 279 89 584 194 194 51 chrY 544061 544257 -50969327 - MER95 LTR ERV -199 232 9 341 279 99 71 chrY 544259 544653 -50968931 - L1M4 LINE L1 -1120 5026 4622 44 20 0 0 chrY 545063 545114 -50968470 + AT_rich Low_complexity Low_complexity 1 51 0 4408 189 33 6 chrY 545115 546126 -50967458 + L1 LINE L1 4335 5372 -774 3850 197 25 93 chrY 546126 547317 -50966267 + MER39B-int LTR ERV1 5074 6183 -148 3149 175 14 36 chrY 547386 548025 -50965559 + MER39B LTR ERV1 29 653 0 2650 219 96 14 chrY 548025 548825 -50964759 - L1MB7 LINE L1 -63 6121 5256 402 244 13 97 chrY 548831 549069 -50964515 - L1MB7 LINE L1 -1459 4687 4470 959 145 30 30 chrY 549167 549367 -50964217 - L1MA7 LINE L1 -3 6288 6089 187 91 23 23 chrY 549711 549755 -50963829 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 925 254 52 0 chrY 550014 550305 -50963279 + L1M4 LINE L1 2639 2944 -3202 * 2772 124 26 0 chrY 550295 550827 -50962757 - L1PA14 LINE L1 -481 5680 5139 3258 102 10 10 chrY 550827 551310 -50962274 + L1PA14 LINE L1 5671 6159 -2 4686 250 16 63 chrY 551311 551409 -50962175 + L1M4 LINE L1 2928 3029 -3117 814 211 8 86 chrY 551409 551665 -50961919 - MER46A DNA MER2_type 0 236 1 4686 250 16 63 chrY 551665 552126 -50961458 + L1M4 LINE L1 3029 3510 -2636 1917 133 74 17 chrY 552126 552478 -50961106 - THE1C LTR MaLR 0 375 4 4686 250 16 63 chrY 552478 553753 -50959831 + L1M4 LINE L1 3510 4677 -1469 23 54 0 0 chrY 554733 554770 -50958814 + AT_rich Low_complexity Low_complexity 1 37 0 9526 69 1 0 chrY 554773 556022 -50957562 - L1P LINE L1 -3679 2467 1218 7151 54 1 0 chrY 556022 557611 -50955973 + L1PA5 LINE L1 4566 6154 0 604 259 92 6 chrY 558316 558490 -50955094 + MIR SINE MIR 72 260 -2 27 29 0 0 chrY 558667 558701 -50954883 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chrY 558998 559041 -50954543 + (TG)n Simple_repeat Simple_repeat 1 43 0 225 230 90 70 chrY 559193 559293 -50954291 + MLT1I LTR MaLR 308 409 0 199 188 0 50 chrY 560634 560714 -50952870 + GA-rich Low_complexity Low_complexity 2 77 0 1181 74 0 0 chrY 560743 560892 -50952692 - AluY SINE Alu -9 302 154 28 71 0 0 chrY 561627 561683 -50951901 + AT_rich Low_complexity Low_complexity 1 56 0 492 308 85 28 chrY 562527 562774 -50950810 - MIR SINE MIR -1 261 1 13760 181 43 18 chrY 562855 564556 -50949028 - L1PB1 LINE L1 0 6867 5210 536 0 0 15 chrY 564556 564621 -50948963 + (TTTTA)n Simple_repeat Simple_repeat 4 67 0 13760 181 43 18 chrY 564621 566405 -50947179 - L1PB1 LINE L1 -1657 5210 3472 1650 113 4 4 chrY 566405 566636 -50946948 - AluSx SINE Alu -81 231 1 13760 181 43 18 chrY 566636 569682 -50943902 - L1PB1 LINE L1 -3395 3472 1 1699 181 0 7 chrY 571010 571297 -50942287 + AluJb SINE Alu 1 285 -27 23 0 0 0 chrY 571297 571320 -50942264 + AT_rich Low_complexity Low_complexity 1 23 0 2750 281 81 48 chrY 572230 573814 -50939770 + HAL1 LINE L1 1 1637 -870 22 0 0 0 chrY 577454 577476 -50936108 + AT_rich Low_complexity Low_complexity 1 22 0 6991 175 75 37 chrY 577483 578874 -50934710 + L1PA16 LINE L1 16 1458 -6107 6708 47 1 6 chrY 578875 579708 -50933876 - L1PA5 LINE L1 0 6154 5326 4556 60 0 5 chrY 579704 580307 -50933277 + L1PA5 LINE L1 4718 5317 -829 * 6587 150 25 8 chrY 580303 582709 -50930875 + L1PA16 LINE L1 1444 3927 -3638 1972 156 72 29 chrY 582713 583247 -50930337 + MLT2A2 LTR ERVL 1 554 0 5600 187 19 141 chrY 583250 584771 -50928813 + L1PA16 LINE L1 3930 5149 -2416 228 86 0 0 chrY 584771 584806 -50928778 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 5600 187 19 141 chrY 584806 585285 -50928299 + L1PA16 LINE L1 5149 5685 -1880 928 152 0 0 chrY 585282 585440 -50928144 + L1 LINE L1 3650 3807 -2339 * 4902 178 38 46 chrY 585466 586689 -50926895 + L1PA16 LINE L1 5704 6893 -692 2333 74 3 6 chrY 586689 587000 -50926584 - AluY SINE Alu -1 310 1 4902 178 38 46 chrY 587000 587680 -50925904 + L1PA16 LINE L1 6893 7577 -8 982 237 60 82 chrY 587693 588388 -50925196 + L1M4 LINE L1 2977 3656 -3909 * 2005 169 52 54 chrY 588385 588726 -50924858 + L1MA7 LINE L1 5765 6106 -185 1709 154 82 113 chrY 588726 589167 -50924417 + MSTA LTR MaLR 2 428 0 2005 169 52 54 chrY 589167 589341 -50924243 + L1MA7 LINE L1 6106 6279 -12 783 295 61 40 chrY 589382 589673 -50923911 + HAL1 LINE L1 2020 2326 -181 1866 197 45 33 chrY 589673 590094 -50923490 + MSTB LTR MaLR 1 426 0 783 295 61 40 chrY 590094 590280 -50923304 + HAL1 LINE L1 2326 2507 0 2277 159 16 60 chrY 591347 591794 -50921790 + MSTB1 LTR MaLR 1 427 -5 22 35 0 0 chrY 592498 592527 -50921057 + AT_rich Low_complexity Low_complexity 1 29 0 237 316 20 20 chrY 592896 592994 -50920590 + MER5B DNA MER1_type 1 98 -80 8452 216 81 30 chrY 593552 593901 -50919683 - L1MC2 LINE L1 -11 7747 7417 2315 85 0 10 chrY 593901 594206 -50919378 + AluSc SINE Alu 1 302 -7 8452 216 81 30 chrY 594206 596118 -50917466 - L1MC2 LINE L1 -341 7417 5403 5200 208 52 14 chrY 596221 598054 -50915530 - L1MC1 LINE L1 0 6613 4711 2516 119 6 3 chrY 598054 598415 -50915169 + THE1B LTR MaLR 1 362 -2 5200 208 52 14 chrY 598415 598528 -50915056 - L1MC1 LINE L1 -1902 4711 4604 644 302 37 0 chrY 598597 598786 -50914798 - MLT2B1 LTR ERVL -322 198 3 2232 112 0 0 chrY 598787 599082 -50914502 + AluSg SINE Alu 1 295 -15 2714 96 5 8 chrY 599098 599474 -50914110 + THE1C LTR MaLR 1 375 0 351 293 50 0 chrY 599475 599615 -50913969 + L1M4 LINE L1 4840 4986 -2579 1036 255 7 29 chrY 599628 599906 -50913678 + AluJo SINE Alu 11 282 -30 2528 238 33 6 chrY 599934 600594 -50912990 + L1M4 LINE L1 4980 5657 -1908 264 191 16 32 chrY 600656 600719 -50912865 + MLT2B1 LTR ERVL 298 359 -161 3207 216 76 26 chrY 600727 602732 -50910852 - L1MC1 LINE L1 -2751 3675 1479 871 150 50 0 chrY 602747 602907 -50910677 - L1MA3 LINE L1 -8 6297 6130 11397 183 30 9 chrY 602948 606367 -50907217 - L1MA3 LINE L1 -102 7265 3772 7904 210 24 125 chrY 606363 608906 -50904678 - L1MA3 LINE L1 -4564 2645 1 * 1676 250 71 63 chrY 610150 611054 -50902530 - L1M4 LINE L1 -1171 4975 4065 1246 281 79 41 chrY 611273 611443 -50902141 - L1M4c LINE L1 -4539 2418 2256 186 103 0 0 chrY 611443 611472 -50902112 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1246 281 79 41 chrY 611472 612258 -50901326 - L1M4c LINE L1 -4701 2256 1356 286 232 61 0 chrY 612269 612351 -50901233 + L1M4b LINE L1 1330 1416 -5443 290 302 0 0 chrY 612370 612466 -50901118 - L1M4c LINE L1 -5555 1304 1209 285 146 0 0 chrY 612589 612637 -50900947 + (TG)n Simple_repeat Simple_repeat 1 48 0 896 333 38 10 chrY 612994 613387 -50900197 - L1M4c LINE L1 -5922 937 534 655 133 0 0 chrY 613658 613763 -50899821 - L1PA8A LINE L1 -29 6102 5998 23 0 0 0 chrY 614175 614198 -50899386 + AT_rich Low_complexity Low_complexity 1 23 0 2002 132 3 3 chrY 615175 615463 -50898121 - AluSx SINE Alu -22 290 3 30656 110 13 66 chrY 615567 622070 -50891514 + L1PA7 LINE L1 12 6153 -1 230 286 0 65 chrY 622762 622839 -50890745 + MER5B DNA MER1_type 4 75 -103 233 0 0 59 chrY 622982 623016 -50890568 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 247 366 0 20 chrY 623106 623207 -50890377 + MLT1K LTR MaLR 166 264 -324 392 339 0 0 chrY 623346 623473 -50890111 + MLT1K LTR MaLR 354 480 -108 333 234 102 55 chrY 624993 625249 -50888335 - L1MC5 LINE L1 -158 7803 7536 1524 246 20 9 chrY 625876 626221 -50887363 + MLT1A1 LTR MaLR 14 362 -3 374 343 116 5 chrY 627458 627656 -50885928 - MIR SINE MIR -6 256 37 23 0 0 0 chrY 628665 628688 -50884896 + AT_rich Low_complexity Low_complexity 1 23 0 281 259 0 24 chrY 628856 628941 -50884643 + L2 LINE L2 2152 2234 -1080 199 365 47 0 chrY 629183 629268 -50884316 + L2 LINE L2 2723 2811 -503 24 32 0 0 chrY 629496 629527 -50884057 + AT_rich Low_complexity Low_complexity 1 31 0 280 277 32 43 chrY 629539 629633 -50883951 - MLT1H1 LTR MaLR -82 473 381 10770 219 51 41 chrY 629725 630875 -50882709 - L1PA16 LINE L1 -1 7603 6466 1479 188 61 4 chrY 630875 631152 -50882432 + AluJb SINE Alu 2 294 -18 10770 219 51 41 chrY 631152 632245 -50881339 - L1PA16 LINE L1 -1138 6466 5385 1247 77 0 0 chrY 632245 632401 -50881183 + AluSg SINE Alu 1 156 -154 10770 219 51 41 chrY 632401 635346 -50878238 - L1PA16 LINE L1 -2219 5385 2199 348 283 0 10 chrY 635598 635697 -50877887 - L1PA16 LINE L1 -5399 2182 2085 873 345 36 46 chrY 635812 636420 -50877164 - L1PA16 LINE L1 -6185 1389 788 13729 155 26 11 chrY 636432 636632 -50876952 - Tigger1 DNA MER2_type 0 2418 2223 1600 189 14 7 chrY 636632 636918 -50876666 + AluJo SINE Alu 1 288 -24 219 36 0 0 chrY 636922 636950 -50876634 + (CAA)n Simple_repeat Simple_repeat 2 29 0 13729 155 26 11 chrY 636950 639119 -50874465 - Tigger1 DNA MER2_type -197 2221 8 211 279 36 117 chrY 639592 639703 -50873881 - MIR SINE MIR -98 164 63 222 118 0 0 chrY 641050 641084 -50872500 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1801 171 10 7 chrY 641195 641505 -50872079 + AluJb SINE Alu 1 311 -1 459 309 23 11 chrY 641617 641792 -50871792 + CT-rich Low_complexity Low_complexity 3 179 0 279 0 0 0 chrY 641861 641892 -50871692 + (TG)n Simple_repeat Simple_repeat 2 32 0 391 108 0 0 chrY 642078 642143 -50871441 + L1PA13 LINE L1 6096 6160 -3 543 250 119 6 chrY 642364 642524 -50871060 - MIR SINE MIR -49 213 36 21 0 0 0 chrY 643254 643275 -50870309 + AT_rich Low_complexity Low_complexity 1 21 0 237 339 18 46 chrY 643284 643393 -50870191 - MER5A DNA MER1_type -72 117 12 748 277 68 4 chrY 643665 643900 -50869684 + MIR SINE MIR 12 261 -1 216 111 0 0 chrY 643914 643950 -50869634 + (CAT)n Simple_repeat Simple_repeat 1 36 0 36 70 0 0 chrY 644083 644154 -50869430 + AT_rich Low_complexity Low_complexity 1 71 0 2309 68 0 10 chrY 644296 644592 -50868992 + AluY SINE Alu 2 294 -17 696 324 44 35 chrY 644694 645237 -50868347 - L1ME3 LINE L1 -280 5882 5335 1454 180 3 42 chrY 645404 645693 -50867891 - AluJo SINE Alu -21 291 14 3234 147 7 47 chrY 646125 646718 -50866866 + LTR24B LTR ERV1 1 569 -7 1246 237 76 57 chrY 646718 647312 -50866272 + LTR24B-int LTR ERV1 1 745 -4378 350 213 13 13 chrY 648056 648131 -50865453 + LTR24B-int LTR ERV1 1121 1195 -5136 312 274 14 0 chrY 648142 648215 -50865369 + tRNA-Glu-GAG tRNA tRNA 2 75 0 406 216 0 20 chrY 648215 648317 -50865267 + LTR24B-int LTR ERV1 1283 1382 -4949 848 191 39 22 chrY 648441 648619 -50864965 + LTR24B-int LTR ERV1 1372 1552 -4779 360 227 34 59 chrY 648727 648846 -50864738 + LTR24B-int LTR ERV1 873 988 -4135 369 250 0 0 chrY 648846 648922 -50864662 + MER34C LTR ERV1 155 230 -355 4432 192 77 80 chrY 648938 649878 -50863706 + LTR24B-int LTR ERV1 1093 2034 -4208 1365 237 0 33 chrY 649878 650182 -50863402 + AluJo SINE Alu 1 294 -8 4432 192 77 80 chrY 650182 651694 -50861890 + LTR24B-int LTR ERV1 2034 4848 -1394 2516 197 40 19 chrY 651694 652669 -50860915 + LTR24B-int LTR ERV1 4425 4999 -124 2282 97 3 0 chrY 652681 652981 -50860603 - AluSp SINE Alu -11 302 2 5930 109 32 12 chrY 652986 654647 -50858937 - L1PA13 LINE L1 0 6163 4489 511 182 16 8 chrY 654648 654769 -50858815 + L1PA13 LINE L1 4362 4483 -1663 2667 164 51 9 chrY 654859 655408 -50858176 + LTR24B LTR ERV1 1 572 -4 259 259 79 65 chrY 655957 656247 -50857337 + HAL1 LINE L1 947 1240 -1267 297 109 0 22 chrY 656268 656314 -50857270 + MER11B LTR ERVK 1191 1235 -1 2931 80 18 0 chrY 656314 656715 -50856869 + L1PA8 LINE L1 5762 6169 -3 588 112 5 4 chrY 656725 656843 -50856741 - L1MC/D LINE L1 -406 5760 5664 1886 137 7 17 chrY 656956 657256 -50856328 + AluSx SINE Alu 3 299 -13 442 342 46 29 chrY 657292 657532 -50856052 + L2 LINE L2 1717 1960 -1354 737 160 0 40 chrY 658692 658849 -50854735 - AluJb SINE Alu 0 316 165 2523 199 19 29 chrY 659035 659657 -50853927 - L1MC1 LINE L1 0 6613 5998 727 155 69 6 chrY 659675 659849 -50853735 - L1MA9 LINE L1 0 6312 6128 5365 192 31 2 chrY 659849 660979 -50852605 - L1 LINE L1 -1793 5313 4151 2121 256 72 33 chrY 660982 661709 -50851875 - L1 LINE L1 -6243 787 2 6171 230 27 84 chrY 661728 661792 -50851792 - L1MC1 LINE L1 -603 6010 5944 315 0 0 0 chrY 661792 661827 -50851757 + (TG)n Simple_repeat Simple_repeat 2 36 0 6171 230 27 84 chrY 661827 663192 -50850392 - L1MC1 LINE L1 -669 5944 4502 1622 190 80 86 chrY 663192 663782 -50849802 + LTR60 LTR ERV1 1 586 0 6171 230 27 84 chrY 663782 665488 -50848096 - L1MC1 LINE L1 -2111 4502 2699 2358 93 0 10 chrY 665488 665801 -50847783 - AluSg SINE Alu 0 310 1 6171 230 27 84 chrY 665801 665896 -50847688 - L1MC1 LINE L1 -3914 2699 2992 1638 174 31 10 chrY 665896 666184 -50847400 + AluJb SINE Alu 18 311 -1 6171 230 27 84 chrY 666184 666428 -50847156 - L1MC1 LINE L1 -3620 2993 2737 4976 224 36 30 chrY 666434 667699 -50845885 - L1MC1 LINE L1 -5108 1318 46 2025 107 3 7 chrY 668464 668762 -50844822 - AluSx SINE Alu -15 297 1 21 0 0 0 chrY 669383 669404 -50844180 + AT_rich Low_complexity Low_complexity 1 21 0 662 287 101 13 chrY 669614 669851 -50843733 - MIR SINE MIR 0 262 5 22 0 0 0 chrY 670498 670520 -50843064 + AT_rich Low_complexity Low_complexity 1 22 0 328 89 0 0 chrY 670932 670977 -50842607 - Alu SINE Alu -258 45 1 2106 70 0 22 chrY 671110 671383 -50842201 + AluY SINE Alu 37 303 -8 254 310 0 10 chrY 671384 671484 -50842100 - L1MCb LINE L1 -1973 4453 4355 25 0 0 0 chrY 671569 671594 -50841990 + AT_rich Low_complexity Low_complexity 1 25 0 616 292 88 86 chrY 671699 672010 -50841574 - L1M4 LINE L1 -2370 3776 3467 1369 218 14 0 chrY 672010 672290 -50841294 - AluJb SINE Alu -28 284 1 616 292 88 86 chrY 672290 672975 -50840609 - L1M4 LINE L1 -2679 3467 2778 418 330 52 73 chrY 673021 673406 -50840178 - L1MEd LINE L1 -5643 476 100 250 232 91 40 chrY 674084 674183 -50839401 - MLT1I LTR MaLR -2 407 304 2481 211 39 7 chrY 674757 675327 -50838257 + L1MB3 LINE L1 5586 6173 -10 10289 188 34 4 chrY 675371 677055 -50836529 - L1PB1 LINE L1 -1 6866 5233 234 0 0 0 chrY 677055 677081 -50836503 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 10289 188 34 4 chrY 677081 678675 -50834909 - L1PB1 LINE L1 -1634 5233 3500 251 229 41 8 chrY 678686 678808 -50834776 + (TA)n Simple_repeat Simple_repeat 2 127 0 6038 116 39 6 chrY 678808 679797 -50833787 - L1PB1 LINE L1 -4458 2405 1384 461 177 50 116 chrY 679797 679978 -50833606 - MER4B-int LTR ERV1 -3751 2195 2027 198 103 0 0 chrY 680021 680050 -50833534 + (CA)n Simple_repeat Simple_repeat 2 30 0 3285 194 12 5 chrY 680083 680860 -50832724 - MER4B-int LTR ERV1 -5698 1060 225 1660 135 51 11 chrY 680883 680960 -50832624 - MER4B-int LTR ERV1 -6473 285 213 182 31 0 62 chrY 680960 680992 -50832592 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1660 135 51 11 chrY 680992 681188 -50832396 - MER4B-int LTR ERV1 -6545 213 1 3258 152 6 11 chrY 681188 681802 -50831782 - MER4B LTR ERV1 0 779 3 838 250 44 0 chrY 681804 682032 -50831552 - L1MCb LINE L1 -2311 4115 3878 * 1431 209 55 13 chrY 682030 682733 -50830851 - L1MCb LINE L1 -3953 2473 1702 1758 150 3 46 chrY 682737 683098 -50830486 - MER4A LTR ERV1 0 664 261 236 111 22 22 chrY 683098 683143 -50830441 - MER4A LTR ERV1 -566 98 54 2026 220 49 52 chrY 683174 683250 -50830334 - L1MCb LINE L1 -4821 1605 1530 2510 69 0 0 chrY 683250 683555 -50830029 - AluY SINE Alu -6 305 1 2026 220 49 52 chrY 683555 684499 -50829085 - L1MCb LINE L1 -4896 1530 609 408 225 40 2 chrY 684537 684650 -50828934 - LTR9B LTR ERV1 0 644 557 255 283 0 0 chrY 684774 684834 -50828750 + LTR4 LTR ERV1 298 357 -239 1225 170 7 92 chrY 684920 685226 -50828358 + LTR4 LTR ERV1 317 596 0 2072 242 59 8 chrY 685226 685751 -50827833 - LTR9B LTR ERV1 -86 558 7 1437 167 7 11 chrY 685757 686022 -50827562 - HUERS-P3 LTR ERV1 0 8919 6828 811 154 18 6 chrY 686347 686516 -50827068 - HUERS-P3 LTR ERV1 -2453 2562 2392 515 200 16 24 chrY 686517 686642 -50826942 - HUERS-P3 LTR ERV1 -1934 6985 6862 3441 204 13 5 chrY 686653 687287 -50826297 - HUERS-P3 LTR ERV1 -2007 6912 6274 1418 173 68 0 chrY 687279 687528 -50826056 - HUERS-P3 LTR ERV1 -3753 5166 4901 * 736 167 91 0 chrY 687529 687661 -50825923 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 9203 163 14 2 chrY 687654 689130 -50824454 - HUERS-P3 LTR ERV1 -5635 3284 1791 4948 173 30 12 chrY 689127 690012 -50823572 - HUERS-P3 LTR ERV1 -7267 1652 752 * 2825 205 34 19 chrY 690057 690682 -50822902 - HUERS-P3 LTR ERV1 -8285 634 1 2740 208 59 8 chrY 690682 691289 -50822295 - LTR9B LTR ERV1 0 644 7 2657 222 11 81 chrY 691291 691759 -50821825 - L1MCa LINE L1 -5342 754 389 2039 61 0 0 chrY 691759 692063 -50821521 + AluY SINE Alu 34 337 0 2657 222 11 81 chrY 692063 692401 -50821183 - L1MCa LINE L1 -5707 389 29 23 0 0 0 chrY 692405 692428 -50821156 + AT_rich Low_complexity Low_complexity 1 23 0 314 204 97 11 chrY 692531 692624 -50820960 - L1MD1 LINE L1 -39 6203 6103 530 275 26 0 chrY 692642 692835 -50820749 - L1MDa LINE L1 -2934 3472 3275 476 301 25 0 chrY 692834 692997 -50820587 - L1MDa LINE L1 -4168 2238 2072 * 1555 260 57 67 chrY 693010 693798 -50819786 - L1MDa LINE L1 -4390 2016 1237 259 29 0 0 chrY 693831 693866 -50819718 - L1MA7 LINE L1 -21 6270 6236 1172 156 23 8 chrY 693869 694169 -50819415 + L1M2 LINE L1 5180 5482 -743 2281 257 67 123 chrY 694227 695400 -50818184 - L1MDa LINE L1 -5274 1135 28 3085 199 79 47 chrY 695405 695894 -50817690 - L1MC3 LINE L1 -16 7769 7238 3244 175 30 57 chrY 695894 696701 -50816883 + LTR1 LTR ERV1 1 785 0 3085 199 79 47 chrY 696701 697088 -50816496 - L1MC3 LINE L1 -547 7238 6865 3256 262 58 7 chrY 697106 697484 -50816100 - L1M4 LINE L1 -1164 4982 4625 1889 141 133 16 chrY 697484 697867 -50815717 + MSTA LTR MaLR 1 428 0 3256 262 58 7 chrY 697867 698586 -50814998 - L1M4 LINE L1 -1521 4625 3829 1494 211 5 83 chrY 698632 699053 -50814531 + MLT1B LTR MaLR 1 388 -2 545 224 86 82 chrY 699054 699358 -50814226 - L1MCa LINE L1 -5026 1400 1096 1181 217 102 110 chrY 699654 700064 -50813520 + MSTD-int LTR MaLR 1237 1643 -92 2547 273 57 62 chrY 700065 701880 -50811704 + L1MB7 LINE L1 2564 4368 -1778 2303 225 73 2 chrY 701895 702708 -50810876 + L1MB7 LINE L1 4951 5827 -357 32 75 0 0 chrY 703059 703126 -50810458 + AT_rich Low_complexity Low_complexity 1 67 0 27 73 0 0 chrY 703207 703262 -50810322 + AT_rich Low_complexity Low_complexity 1 55 0 184 280 96 88 chrY 703711 703836 -50809748 - MIR SINE MIR -19 243 118 2171 209 35 7 chrY 703848 704279 -50809305 + Tigger5 DNA MER2_type 10 452 -1871 395 190 25 0 chrY 704290 704369 -50809215 + Tigger5 DNA MER2_type 2243 2323 0 22 35 0 0 chrY 704469 704498 -50809086 + AT_rich Low_complexity Low_complexity 1 29 0 881 227 100 0 chrY 704969 705260 -50808324 + MER33 DNA MER1_type 1 320 -4 7086 235 13 10 chrY 706226 707741 -50805843 + ERVL LTR ERVL 417 1936 -3828 799 224 87 42 chrY 707743 708073 -50805511 + MSTD LTR MaLR 1 394 -2 629 73 0 109 chrY 708113 708223 -50805361 + L1MA3 LINE L1 6198 6295 -10 360 336 0 0 chrY 708237 708359 -50805225 + MSTD-int LTR MaLR 44 165 -1570 1943 137 77 14 chrY 708359 708710 -50804874 - THE1C LTR MaLR 0 375 3 399 133 0 13 chrY 708712 708787 -50804797 - THE1C-int LTR MaLR 0 1580 1507 1360 262 100 17 chrY 708794 709214 -50804370 + MLT2B1 LTR ERVL 1 455 -65 225 0 0 0 chrY 709214 709239 -50804345 + (TC)n Simple_repeat Simple_repeat 1 25 0 13908 181 22 9 chrY 709243 713326 -50800258 + L1MA1 LINE L1 2158 6296 -6 457 261 121 48 chrY 713332 713584 -50800000 + L1MC4 LINE L1 6369 6650 -1392 279 0 0 0 chrY 713584 713615 -50799969 + (CA)n Simple_repeat Simple_repeat 2 32 0 457 261 121 48 chrY 713615 713676 -50799908 + L1MC4 LINE L1 6650 6705 -1337 258 32 0 0 chrY 713839 713870 -50799714 + (TCTCC)n Simple_repeat Simple_repeat 5 35 0 465 272 44 0 chrY 713891 714027 -50799557 - MLT1E2 LTR MaLR -319 307 166 466 159 0 0 chrY 714038 714107 -50799477 + AluS SINE Alu 221 289 -23 354 297 34 46 chrY 714143 714318 -50799266 + L1ME LINE L1 5618 5790 -331 1088 300 47 16 chrY 714329 714823 -50798761 - L1MCb LINE L1 -5104 941 433 983 278 35 56 chrY 714811 715230 -50798354 - L1M4 LINE L1 -1931 4215 3789 * 2266 82 0 0 chrY 715230 715558 -50798026 - AluY SINE Alu 0 328 1 983 278 35 56 chrY 715558 715697 -50797887 - L1M4 LINE L1 -2357 3789 3668 245 29 29 0 chrY 715697 715731 -50797853 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 983 278 35 56 chrY 715731 715792 -50797792 - L1M4 LINE L1 -2478 3668 3607 2657 159 2 47 chrY 715794 716302 -50797282 - L1PA15 LINE L1 0 6165 5681 21 0 0 0 chrY 716306 716327 -50797257 + AT_rich Low_complexity Low_complexity 1 21 0 442 238 66 13 chrY 716556 716707 -50796877 - L1M4 LINE L1 -2915 3231 3073 2771 175 45 15 chrY 716723 717259 -50796325 + MER7C DNA MER2_type 2 553 -49 * 2813 190 87 0 chrY 717256 717788 -50795796 - Tigger4(Zombi) DNA MER2_type -2153 578 1 3434 193 52 75 chrY 717791 718526 -50795058 + L1MA6 LINE L1 5042 5774 -526 253 122 20 0 chrY 718526 718575 -50795009 + LTR66 LTR ERVL 389 438 -172 3434 193 52 75 chrY 718575 719090 -50794494 + L1MA6 LINE L1 5774 6299 -1 1941 149 44 16 chrY 719998 720361 -50793223 - THE1C LTR MaLR 0 375 3 9686 136 11 37 chrY 720367 721977 -50791607 - THE1C-int LTR MaLR -4 1576 8 1707 150 62 38 chrY 721977 722316 -50791268 - THE1C LTR MaLR -28 347 1 42448 32 24 2 chrY 723917 729932 -50783652 + L1HS LINE L1 2 6155 0 198 91 0 0 chrY 729934 729967 -50783617 + (A)n Simple_repeat Simple_repeat 1 33 0 246 32 0 0 chrY 730828 730859 -50782725 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 31 76 0 0 chrY 730964 731030 -50782554 + AT_rich Low_complexity Low_complexity 1 66 0 496 286 181 21 chrY 731165 731452 -50782132 + LTR16C LTR ERVL 157 489 -2 22 70 0 0 chrY 731929 731972 -50781612 + AT_rich Low_complexity Low_complexity 1 43 0 1501 237 67 5 chrY 732149 732520 -50781064 + MSTD LTR MaLR 3 396 0 4778 257 55 48 chrY 732523 733188 -50780396 + MSTD-int LTR MaLR 3 662 -1073 2364 72 0 0 chrY 733188 733509 -50780075 + AluY SINE Alu 1 321 0 4778 257 55 48 chrY 733509 734560 -50779024 + MSTD-int LTR MaLR 662 1735 0 1067 268 78 10 chrY 734560 734866 -50778718 + MSTD LTR MaLR 1 327 -69 219 209 30 0 chrY 734920 734987 -50778597 + (TA)n Simple_repeat Simple_repeat 1 69 0 23 54 0 0 chrY 735052 735089 -50778495 + AT_rich Low_complexity Low_complexity 1 37 0 183 80 0 0 chrY 735090 735115 -50778469 + (TC)n Simple_repeat Simple_repeat 1 25 0 1934 212 100 25 chrY 736667 737148 -50776436 - MLT2B1 LTR ERVL -1 519 3 7698 180 46 11 chrY 737149 738599 -50774985 - ERVL-B1 LTR ERVL -6 5758 4258 7420 218 14 23 chrY 738601 740150 -50773434 - ERVL-B1 LTR ERVL -3846 1918 385 585 173 23 20 chrY 740150 740466 -50773118 + (TA)n Simple_repeat Simple_repeat 1 317 0 1034 293 10 7 chrY 740492 740799 -50772785 - ERVL-B1 LTR ERVL -5346 308 1 1755 222 50 48 chrY 740799 741318 -50772266 - MLT2B1 LTR ERVL 0 520 1 43 64 0 0 chrY 741407 741485 -50772099 + AT_rich Low_complexity Low_complexity 1 78 0 377 302 21 57 chrY 741485 741677 -50771907 - MIR SINE MIR -6 256 72 5042 139 31 3 chrY 742580 743650 -50769934 - L1PA16 LINE L1 0 6166 5107 27 0 0 0 chrY 743778 743805 -50769779 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chrY 744034 744055 -50769529 + AT_rich Low_complexity Low_complexity 1 21 0 792 154 0 29 chrY 744433 744569 -50769015 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chrY 744569 744610 -50768974 + AT_rich Low_complexity Low_complexity 1 41 0 257 127 109 0 chrY 744634 744689 -50768895 - L1MA3 LINE L1 -1 6304 6244 248 212 0 15 chrY 745301 745367 -50768217 - L1MD2 LINE L1 -3 6356 6292 * 2815 100 0 2 chrY 745365 745766 -50767818 - L1PA7 LINE L1 -1227 4919 4520 6570 65 5 40 chrY 745766 747036 -50766548 + L1PA7 LINE L1 4911 6146 -8 450 211 42 0 chrY 747036 747131 -50766453 - L1MD1 LINE L1 -59 6183 6085 1051 254 99 9 chrY 747137 747608 -50765976 - L1MD1 LINE L1 -396 5963 5442 973 241 64 19 chrY 747609 747933 -50765651 - MSTD LTR MaLR -35 361 1 505 258 37 53 chrY 748177 748367 -50765217 - L2 LINE L2 -16 3297 3111 257 278 0 0 chrY 748462 748534 -50765050 - L2 LINE L2 -1015 2299 2228 306 333 95 26 chrY 749598 749829 -50763755 - MLT1J2 LTR MaLR -145 305 59 2090 163 22 3 chrY 751664 752019 -50761565 + MER57A LTR ERV1 1 362 -41 8524 144 29 41 chrY 752019 753467 -50760117 + MER57A-int LTR ERV1 14 1444 -6093 3463 124 4 0 chrY 753464 753954 -50759630 + MER57A-int LTR ERV1 6655 7146 -391 * 660 107 90 33 chrY 753954 754076 -50759508 + LTR54B LTR ERV1 3 131 -367 1540 113 43 31 chrY 754076 754171 -50759413 + MER57A-int LTR ERV1 7279 7371 -166 186 43 0 0 chrY 754171 754194 -50759390 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1540 113 43 31 chrY 754194 754354 -50759230 + MER57A-int LTR ERV1 7371 7537 0 2238 156 10 29 chrY 754354 754765 -50758819 + MER57A LTR ERV1 1 403 0 301 230 61 47 chrY 755726 755874 -50757710 + L1MC4 LINE L1 7892 8041 -1 6960 209 33 16 chrY 755907 758377 -50755207 - L1PA16 LINE L1 -144 6022 3486 22 0 0 0 chrY 758532 758554 -50755030 + AT_rich Low_complexity Low_complexity 1 22 0 20972 163 23 6 chrY 758652 761279 -50752305 + L1MA3 LINE L1 22 2728 -4837 2284 94 10 0 chrY 761279 761577 -50752007 + AluSc SINE Alu 1 301 -8 20972 163 23 6 chrY 761577 762587 -50750997 + L1MA3 LINE L1 2728 3720 -3845 272 239 0 28 chrY 762587 762658 -50750926 + L1P LINE L1 4890 4958 -1188 1316 122 0 0 chrY 762674 762855 -50750729 + AluJb SINE Alu 117 297 -15 9634 189 24 8 chrY 762871 763376 -50750208 + L1MA3 LINE L1 4624 5119 -2605 2861 104 0 5 chrY 763376 763790 -50749794 - L1PA13 LINE L1 -4 6159 5748 9634 189 24 8 chrY 763790 764026 -50749558 + L1MA3 LINE L1 5119 5350 -2374 6087 97 7 20 chrY 764026 764966 -50748618 + L1PA13 LINE L1 5231 6158 -5 9634 189 24 8 chrY 764966 767272 -50746312 + L1MA3 LINE L1 5350 7723 -1 227 333 14 0 chrY 767740 767809 -50745775 + MIR3 SINE MIR 124 193 -15 855 259 23 5 chrY 767823 768039 -50745545 - MER58A DNA MER1_type -4 220 1 1985 236 45 2 chrY 768498 769153 -50744431 - L1MB7 LINE L1 -301 5883 5197 2096 221 25 51 chrY 769172 769683 -50743901 - LTR53 LTR ERVL -21 498 1 4110 239 35 11 chrY 769907 770495 -50743089 - HERVL74 LTR ERVL -2335 3350 2728 2254 169 88 39 chrY 770495 770855 -50742729 + LTR49 LTR ERV1 1 401 -194 1857 162 0 17 chrY 770855 771152 -50742432 - AluJo SINE Alu -12 300 9 2254 169 88 39 chrY 771152 771358 -50742226 + LTR49 LTR ERV1 401 595 0 4110 239 35 11 chrY 771358 771754 -50741830 - HERVL74 LTR ERVL -2957 2728 2343 4091 118 14 62 chrY 771757 772483 -50741101 - LTR8 LTR ERV1 0 691 1 801 201 6 17 chrY 772495 772669 -50740915 - HERVL74 LTR ERVL -3423 2262 2091 2188 192 16 91 chrY 772784 773349 -50740235 - HERVL74 LTR ERVL -1483 2102 1623 1808 250 56 109 chrY 773374 774137 -50739447 - MER21B LTR ERV1 -124 739 17 549 211 14 19 chrY 774156 774370 -50739214 - HERVL74 LTR ERVL -4061 1624 1313 3804 172 33 7 chrY 774370 775063 -50738521 + MER50 LTR ERV1 1 711 -23 689 212 34 7 chrY 775144 775290 -50738294 - HERVL74 LTR ERVL -4368 1317 1168 2485 226 26 33 chrY 775290 775506 -50738078 + L1M3 LINE L1 4896 5112 -1071 1680 133 50 36 chrY 775506 775784 -50737800 - AluSx SINE Alu -27 285 4 2485 226 26 33 chrY 775784 776476 -50737108 + L1M3 LINE L1 5112 5787 -396 236 255 0 0 chrY 776695 776746 -50736838 - MER107 DNA MER1_type -46 151 101 1844 273 30 2 chrY 777714 778219 -50735365 - LTR53 LTR ERVL 0 519 1 2266 224 132 65 chrY 778219 779187 -50734397 - L1MB7 LINE L1 -944 5202 4142 1523 169 53 27 chrY 779187 779488 -50734096 - AluJo SINE Alu -1 311 3 2266 224 132 65 chrY 779488 779678 -50733906 - L1MB7 LINE L1 -2004 4142 3966 29 70 0 0 chrY 779740 779797 -50733787 + AT_rich Low_complexity Low_complexity 1 57 0 793 243 19 63 chrY 781364 781673 -50731911 + MLT2D LTR ERVL 83 475 -40 662 110 20 0 chrY 782503 782603 -50730981 - L1PA13 LINE L1 -265 5903 5802 1759 116 0 0 chrY 782604 782862 -50730722 + L1PA13 LINE L1 5902 6159 -4 458 75 15 0 chrY 782888 782955 -50730629 + (TA)n Simple_repeat Simple_repeat 2 69 0 2207 93 0 7 chrY 783323 783613 -50729971 - AluSx SINE Alu -24 288 1 24 0 0 0 chrY 783900 783924 -50729660 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrY 785289 785310 -50728274 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrY 785938 785965 -50727619 + AT_rich Low_complexity Low_complexity 1 27 0 228 287 124 39 chrY 786022 786151 -50727433 - MIR SINE MIR -52 210 71 312 191 119 79 chrY 786245 786371 -50727213 + L1MC3 LINE L1 5342 5472 -861 450 0 0 0 chrY 786374 786424 -50727160 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 5572 223 80 61 chrY 786425 786894 -50726690 + L1MC3 LINE L1 5658 6117 -1668 2219 102 13 0 chrY 786894 787199 -50726385 + AluSp SINE Alu 1 309 -4 5572 223 80 61 chrY 787199 788170 -50725414 + L1MC3 LINE L1 6117 7185 -600 249 213 0 0 chrY 788170 788217 -50725367 + MLT1H LTR MaLR 85 131 -418 5572 223 80 61 chrY 788217 788490 -50725094 + L1MC3 LINE L1 7185 7451 -334 8508 205 29 34 chrY 788499 790505 -50723079 + L1 LINE L1 13 2251 -5314 2005 144 3 0 chrY 790896 791195 -50722389 + AluSx SINE Alu 1 300 -12 1611 154 15 80 chrY 791949 792286 -50721298 - MER47A DNA MER2_type 0 366 52 318 188 100 25 chrY 793071 793151 -50720433 + MIR SINE MIR 103 188 -74 661 265 87 42 chrY 793686 794182 -50719402 - L1 LINE L1 -2983 3163 2635 358 270 0 63 chrY 794249 794423 -50719161 - L1 LINE L1 -3654 2492 2330 513 169 7 81 chrY 794453 794589 -50718995 - L1MB8 LINE L1 -1 6177 6052 * 4779 257 39 11 chrY 794588 796073 -50717511 - L1MEc LINE L1 -874 5341 3815 1598 203 70 0 chrY 796074 796433 -50717151 + Tigger2 DNA MER2_type 2 385 -2333 1401 124 26 0 chrY 796431 796664 -50716920 + Tigger2 DNA MER2_type 2404 2642 -76 * 267 205 27 89 chrY 796664 796776 -50716808 + L1 LINE L1 5062 5166 -2399 301 323 0 0 chrY 796776 796841 -50716743 - Tigger2 DNA MER2_type 0 2718 2654 3625 258 68 11 chrY 796841 796860 -50716724 - L1MEc LINE L1 -2501 3714 3698 1950 23 0 0 chrY 796860 797081 -50716503 - AluY SINE Alu -17 294 74 3625 258 68 11 chrY 797081 798567 -50715017 - L1MEc LINE L1 -2517 3698 2171 358 291 14 48 chrY 798599 798809 -50714775 + L1M4 LINE L1 2514 2716 -3430 441 298 98 46 chrY 798880 799249 -50714335 - L1MEc LINE L1 -4298 2098 1711 26 30 0 0 chrY 800273 800306 -50713278 + AT_rich Low_complexity Low_complexity 1 33 0 2238 92 0 16 chrY 801257 801561 -50712023 + AluSg SINE Alu 1 299 -11 501 245 35 0 chrY 801742 801885 -50711699 - MER63 DNA MER1_type 0 1060 913 591 219 39 0 chrY 801901 802029 -50711555 + L1M4b LINE L1 10 142 -6717 267 203 0 0 chrY 802031 802095 -50711489 + (TA)n Simple_repeat Simple_repeat 1 64 0 927 244 19 23 chrY 802377 802842 -50710742 + L1M4b LINE L1 400 921 -5938 3774 193 7 3 chrY 802847 803582 -50710002 - L1 LINE L1 -1910 4236 3499 1619 177 71 18 chrY 803583 803652 -50709932 + L1 LINE L1 4243 4307 -1839 2363 91 0 0 chrY 803652 803959 -50709625 + AluSc SINE Alu 1 307 -2 1619 177 71 18 chrY 803959 804285 -50709299 + L1 LINE L1 4307 4659 -1487 1718 109 0 0 chrY 804286 804515 -50709069 + AluSq SINE Alu 1 229 -84 6958 248 38 9 chrY 804581 806655 -50706929 - L1PA15-16 LINE L1 -1144 5705 3693 2807 7 0 0 chrY 806655 806965 -50706619 - AluYa5 SINE Alu -1 310 1 6958 248 38 9 chrY 806965 807788 -50705796 - L1PA15-16 LINE L1 -3156 3693 1246 4009 107 20 3 chrY 807960 808550 -50705034 - MER4A LTR ERV1 0 600 1 318 276 54 135 chrY 808676 809068 -50704516 - L1M2 LINE L1 -5781 1068 709 936 330 40 12 chrY 809736 810136 -50703448 - L1M2 LINE L1 -6429 420 10 6904 154 34 67 chrY 810139 811594 -50701990 - Tigger2 DNA MER2_type -756 1962 557 10429 177 37 12 chrY 811595 813882 -50699702 + Ricksha DNA DNA 296 2689 -557 324 100 0 0 chrY 813882 813932 -50699652 + L1 LINE L1 4784 4833 -1313 1394 280 31 50 chrY 814055 814618 -50698966 + L1MCb LINE L1 75 628 -5417 1792 151 27 3 chrY 814618 814956 -50698628 - L1MA9 LINE L1 -2 6310 5965 1394 280 31 50 chrY 814956 814978 -50698606 + L1MCb LINE L1 628 649 -5396 982 251 81 10 chrY 814958 815459 -50698125 + L1MCb LINE L1 2285 2837 -3727 * 1876 104 0 84 chrY 815459 815809 -50697775 + AluSq SINE Alu 1 324 0 982 251 81 10 chrY 815809 815887 -50697697 + L1MCb LINE L1 2837 2908 -3656 189 0 0 0 chrY 815950 815971 -50697613 + (CCA)n Simple_repeat Simple_repeat 1 21 0 10383 250 54 15 chrY 817007 821641 -50691943 + L1MB8 LINE L1 1621 6135 -1032 876 193 28 111 chrY 821640 821769 -50691815 + L1MB8 LINE L1 6596 6734 -465 * 1867 166 0 0 chrY 821769 822070 -50691514 - AluSx SINE Alu -11 301 1 876 193 28 111 chrY 822070 822192 -50691392 + L1MB8 LINE L1 6734 6824 -375 863 102 8 0 chrY 822192 822320 -50691264 + L1MA2 LINE L1 6169 6297 -7 876 193 28 111 chrY 822320 822354 -50691230 + L1MB8 LINE L1 6824 6859 -340 21 36 0 0 chrY 822385 822413 -50691171 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 822549 822569 -50691015 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2573 139 27 2 chrY 822882 823329 -50690255 - L1MA2 LINE L1 -8 7715 7258 8094 192 27 29 chrY 823329 823984 -50689600 - L1MA2 LINE L1 -679 7044 6389 282 27 0 9 chrY 823984 824032 -50689552 + AluY SINE Alu 259 299 0 8094 192 27 29 chrY 824032 824318 -50689266 - L1MA2 LINE L1 -1334 6389 6104 414 0 0 0 chrY 824318 824364 -50689220 + (TG)n Simple_repeat Simple_repeat 1 46 0 8094 192 27 29 chrY 824364 825611 -50687973 - L1MA2 LINE L1 -1619 6104 4814 5814 220 42 14 chrY 825616 826885 -50686699 - L1MA2 LINE L1 -6240 1325 22 2107 127 0 0 chrY 827472 827772 -50685812 - AluSx SINE Alu -12 300 1 284 274 24 0 chrY 828101 828185 -50685399 + MIR3 SINE MIR 121 206 -2 29 28 0 0 chrY 828742 828778 -50684806 + AT_rich Low_complexity Low_complexity 1 36 0 327 85 0 0 chrY 831066 831113 -50682471 + (CA)n Simple_repeat Simple_repeat 2 48 0 482 301 45 6 chrY 831273 831429 -50682155 - MIR SINE MIR -55 207 46 261 362 26 17 chrY 831490 831606 -50681978 + L2 LINE L2 3197 3313 0 3419 220 34 11 chrY 831882 832740 -50680844 - L1MC3 LINE L1 -2 7783 6906 266 0 0 29 chrY 832740 832775 -50680809 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1176 248 4 0 chrY 832778 833044 -50680540 - AluJo SINE Alu -34 278 12 1410 246 48 73 chrY 833050 833615 -50679969 - L1MC3 LINE L1 -863 6922 6372 450 269 0 8 chrY 833630 833749 -50679835 + L1MC4a LINE L1 1702 1819 -4565 4126 267 94 20 chrY 833753 835991 -50677593 + L1MC4a LINE L1 1919 4385 -1997 252 59 0 0 chrY 835991 836025 -50677559 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4126 267 94 20 chrY 836025 836367 -50677217 + L1MC4a LINE L1 4385 4700 -1682 727 178 16 0 chrY 836368 836497 -50677087 + FLAM_C SINE Alu 1 131 -12 814 246 33 11 chrY 836500 836772 -50676812 + L1MC4a LINE L1 4693 4970 -1412 3597 271 75 41 chrY 836774 837929 -50675655 + MSTD-int LTR MaLR 541 1735 0 1001 215 75 31 chrY 837929 838278 -50675306 + MSTD LTR MaLR 1 396 0 4797 202 34 4 chrY 838278 839239 -50674345 + ERVL-B1 LTR ERVL 4768 5757 -7 2296 201 47 38 chrY 839239 839746 -50673838 + MLT2B1 LTR ERVL 1 512 -8 392 184 31 20 chrY 839747 839845 -50673739 + L1MB8 LINE L1 6074 6172 -6 690 224 82 0 chrY 840036 840183 -50673401 + L1PA13 LINE L1 1 159 -6628 * 14072 175 19 11 chrY 840181 841009 -50672575 + L1PA13 LINE L1 3007 3827 -2987 411 73 0 0 chrY 841009 841064 -50672520 + (TA)n Simple_repeat Simple_repeat 1 55 0 14072 175 19 11 chrY 841064 843946 -50669638 + L1PA13 LINE L1 3827 6744 -70 220 211 11 56 chrY 844571 844661 -50668923 + A-rich Low_complexity Low_complexity 4 89 0 828 302 44 40 chrY 844668 845142 -50668442 + L1MC4a LINE L1 5643 6118 -1926 262 64 0 43 chrY 845178 845225 -50668359 + (TA)n Simple_repeat Simple_repeat 2 46 0 316 253 10 40 chrY 845227 845326 -50668258 - L1MC4 LINE L1 -1340 6702 6607 349 230 65 50 chrY 845436 845575 -50668009 + L1MC4a LINE L1 6336 6476 -1568 * 3355 220 40 23 chrY 845567 847226 -50666358 + L1MC2 LINE L1 4199 5393 -753 1334 198 34 22 chrY 847227 847551 -50666033 + L1MC2 LINE L1 6006 6333 -11 3439 225 73 24 chrY 847635 848493 -50665091 + L1MD2 LINE L1 5276 6194 -165 2247 62 21 0 chrY 848493 848783 -50664801 - AluY SINE Alu -15 296 1 3439 225 73 24 chrY 848783 848949 -50664635 + L1MD2 LINE L1 6194 6350 -9 23 0 0 0 chrY 850940 850963 -50662621 + AT_rich Low_complexity Low_complexity 1 23 0 996 296 47 73 chrY 851440 852437 -50661147 + L1ME LINE L1 490 1460 -5070 593 307 106 45 chrY 852438 853624 -50659960 + L1ME LINE L1 1413 2713 -3929 2847 203 50 9 chrY 853634 854486 -50659098 + L1MC2 LINE L1 4967 5850 -494 645 333 66 35 chrY 854487 855141 -50658443 - L1M4 LINE L1 -1531 4615 3942 186 43 0 0 chrY 855144 855167 -50658417 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1766 120 14 25 chrY 855170 855454 -50658130 - AluSx SINE Alu -31 281 1 591 76 0 0 chrY 856086 856203 -50657381 - AluY SINE Alu 0 320 204 1944 114 3 7 chrY 856277 856601 -50656983 - AluSg SINE Alu 0 310 1 22 35 0 0 chrY 857902 857931 -50655653 + AT_rich Low_complexity Low_complexity 1 29 0 2177 90 13 26 chrY 858118 858429 -50655155 + AluSx SINE Alu 1 307 -5 2162 82 3 44 chrY 858635 858954 -50654630 + AluY SINE Alu 1 306 -5 279 337 68 5 chrY 862832 863032 -50650552 - L1ME LINE L1 -594 5572 5361 438 234 101 39 chrY 863042 863328 -50650256 - L1ME LINE L1 -803 5343 5040 342 125 0 31 chrY 863333 863397 -50650187 - L1PA8 LINE L1 -4 6168 6107 1631 74 83 0 chrY 863397 863627 -50649957 - L1PA8 LINE L1 -30 6142 5894 1300 129 23 5 chrY 863696 863913 -50649671 - pTR5 LTR ERV1 -2046 392 172 365 224 10 0 chrY 863916 864014 -50649570 - LTR30 LTR ERV1 -80 642 544 4133 136 59 79 chrY 864014 865031 -50648553 - pTR5 LTR ERV1 -413 2025 743 21 0 0 0 chrY 865681 865702 -50647882 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chrY 866541 866589 -50646995 + AT_rich Low_complexity Low_complexity 1 48 0 212 250 0 0 chrY 867128 867172 -50646412 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chrY 867628 867656 -50645928 + AT_rich Low_complexity Low_complexity 1 28 0 32209 109 10 44 chrY 869430 871825 -50641759 - L1PA7 LINE L1 -5 6149 3675 2227 105 0 23 chrY 871825 872130 -50641454 - AluY SINE Alu -13 298 1 32209 109 10 44 chrY 872130 875704 -50637880 - L1PA7 LINE L1 -2479 3675 414 243 0 0 0 chrY 875704 875731 -50637853 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 32209 109 10 44 chrY 875731 876121 -50637463 - L1PA7 LINE L1 -5740 414 12 1059 166 5 49 chrY 876152 876357 -50637227 + AluJb SINE Alu 99 294 -18 2445 170 17 7 chrY 876697 877114 -50636470 - MST-int LTR MaLR -173 1478 1058 230 307 30 10 chrY 877587 877688 -50635896 - L1ME LINE L1 -5962 108 6 23 0 0 0 chrY 877688 877711 -50635873 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chrY 878750 878783 -50634801 + AT_rich Low_complexity Low_complexity 1 33 0 345 208 0 0 chrY 879770 879847 -50633737 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 331 311 0 0 chrY 879848 879938 -50633646 + L1MC4 LINE L1 6615 6704 -1338 22 56 0 0 chrY 880119 880155 -50633429 + AT_rich Low_complexity Low_complexity 1 36 0 186 200 0 0 chrY 880531 880577 -50633007 + (TA)n Simple_repeat Simple_repeat 2 50 -6 2231 202 103 41 chrY 880577 881313 -50632271 + LTR1 LTR ERV1 1 782 -3 186 200 0 0 chrY 881313 881321 -50632263 + (TA)n Simple_repeat Simple_repeat 49 56 0 21 36 0 0 chrY 883943 883971 -50629613 + AT_rich Low_complexity Low_complexity 1 28 0 306 325 107 24 chrY 884964 885133 -50628451 + L1MEd LINE L1 3 185 -5934 2164 149 20 73 chrY 885171 885368 -50628216 + MSTB LTR MaLR 1 207 -219 2034 154 0 0 chrY 885368 885680 -50627904 + AluSx SINE Alu 1 312 0 2164 149 20 73 chrY 885680 885932 -50627652 + MSTB LTR MaLR 207 426 0 276 331 84 24 chrY 885970 886136 -50627448 + L1MEd LINE L1 269 444 -5675 1166 304 22 25 chrY 886315 886716 -50626868 + MLT1E3 LTR MaLR 225 624 0 224 149 21 0 chrY 887071 887118 -50626466 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 642 284 148 33 chrY 887129 887651 -50625933 + L1MC4a LINE L1 5290 5871 -1937 1979 168 94 3 chrY 887831 888223 -50625361 - MSTA LTR MaLR 0 428 1 2139 145 23 6 chrY 888223 888575 -50625009 - MSTA-int LTR MaLR 0 1651 1294 326 309 44 39 chrY 888651 888832 -50624752 + LTR16C LTR ERVL 260 441 -50 380 293 94 17 chrY 888958 889310 -50624274 + L1ME3A LINE L1 5493 5878 -288 435 151 65 11 chrY 889389 889482 -50624102 + MER4A LTR ERV1 1 98 -566 1590 140 164 75 chrY 889482 889853 -50623731 + MER4A LTR ERV1 261 664 0 2368 105 58 43 chrY 889856 890173 -50623411 + MER4A-int LTR ERV1 1 312 -6286 315 0 0 0 chrY 890173 890208 -50623376 + (TG)n Simple_repeat Simple_repeat 1 35 0 2368 105 58 43 chrY 890208 890482 -50623102 + MER4A-int LTR ERV1 312 660 -5938 1658 77 89 52 chrY 890469 890864 -50622720 + MER4A-int LTR ERV1 504 817 -4198 * 3238 77 80 4 chrY 890857 891367 -50622217 + MER4A-int LTR ERV1 1809 2357 -4241 281 154 19 0 chrY 891367 891419 -50622165 + MER4A LTR ERV1 608 660 -4 1905 160 150 5 chrY 891859 892233 -50621351 + MSTA LTR MaLR 1 428 0 387 41 0 0 chrY 893138 893187 -50620397 + (TG)n Simple_repeat Simple_repeat 2 50 0 192 40 0 0 chrY 893836 893861 -50619723 + (A)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chrY 894215 894239 -50619345 + AT_rich Low_complexity Low_complexity 1 24 0 268 358 80 11 chrY 894546 894668 -50618916 - MIR SINE MIR -16 246 105 2023 90 8 0 chrY 894668 894934 -50618650 + AluSq SINE Alu 38 305 -8 268 358 80 11 chrY 894934 894998 -50618586 - MIR SINE MIR -157 105 47 1596 201 0 14 chrY 895624 895913 -50617671 + AluJo SINE Alu 3 287 -25 273 29 0 0 chrY 895955 895989 -50617595 + (CA)n Simple_repeat Simple_repeat 2 35 0 234 0 0 0 chrY 896148 896174 -50617410 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 254 18 0 chrY 896303 896358 -50617226 - L2 LINE L2 -14 3299 3244 2155 130 3 0 chrY 897405 897712 -50615872 + AluSq SINE Alu 3 310 -3 908 216 5 32 chrY 897800 897970 -50615614 + Tigger1 DNA MER2_type 1 165 -2253 3408 101 63 51 chrY 897970 898573 -50615011 - MER4B LTR ERV1 0 610 1 908 216 5 32 chrY 898573 898615 -50614969 + Tigger1 DNA MER2_type 165 207 -2211 505 237 63 78 chrY 898615 898975 -50614609 + LTR18B LTR ERVL 1 600 -2 12567 153 17 19 chrY 898983 900044 -50613540 + Tigger1 DNA MER2_type 203 1264 -1154 2384 77 0 0 chrY 900044 900330 -50613254 - AluY SINE Alu -25 286 1 12567 153 17 19 chrY 900330 901487 -50612097 + Tigger1 DNA MER2_type 1264 2417 -1 1138 232 3 35 chrY 902169 902488 -50611096 - L1PBb LINE L1 -869 6715 6407 6057 133 193 90 chrY 902488 904026 -50609558 - pTR5 LTR ERV1 -2 2436 741 11167 232 28 15 chrY 904038 904423 -50609161 - L1PBb LINE L1 -1183 6401 6023 2189 197 26 5 chrY 904423 904840 -50608744 - MSTB LTR MaLR 0 426 1 11167 232 28 15 chrY 904840 908955 -50604629 - L1PBb LINE L1 -1561 6023 1752 551 313 38 34 chrY 909147 909412 -50604172 - L1PBb LINE L1 -5788 1797 1532 225 222 0 0 chrY 909569 909614 -50603970 + L1M2b LINE L1 168 212 -6997 518 175 21 10 chrY 909662 909759 -50603825 + MER4A LTR ERV1 1 98 -566 1612 136 14 36 chrY 909759 910111 -50603473 + MER4A LTR ERV1 261 663 -1 504 246 8 8 chrY 910113 910235 -50603349 - L1PBb LINE L1 -7450 131 10 821 214 60 15 chrY 910305 910506 -50603078 + L1M4b LINE L1 4 213 -6646 524 125 0 0 chrY 910506 910586 -50602998 + MADE1 DNA Mariner 1 80 0 233 282 84 0 chrY 910656 910727 -50602857 + MER50 LTR ERV1 46 122 -612 1136 270 122 58 chrY 910728 910917 -50602667 + MER50 LTR ERV1 26 201 -533 7562 29 5 0 chrY 910917 912013 -50601571 + L1PA5 LINE L1 5053 6152 -2 1136 270 122 58 chrY 912013 912385 -50601199 + MER50 LTR ERV1 201 633 -101 3267 106 11 42 chrY 912385 912912 -50600672 - MER9 LTR ERVK 0 511 1 1136 270 122 58 chrY 912912 912971 -50600613 + MER50 LTR ERV1 633 687 -47 393 274 28 9 chrY 913001 913107 -50600477 + MER50-int LTR ERV1 18 125 -7080 6182 255 22 50 chrY 913171 914967 -50598617 + MER50-int LTR ERV1 97 1843 -5362 3013 167 14 24 chrY 914966 915461 -50598123 + MER50-int LTR ERV1 1004 1502 -3378 * 2138 131 0 0 chrY 915461 915758 -50597826 + AluSx SINE Alu 1 297 -15 3013 167 14 24 chrY 915758 916567 -50597017 + MER50-int LTR ERV1 1502 4394 -486 414 168 76 42 chrY 916671 916790 -50596794 + MER50-int LTR ERV1 3608 3730 -2868 922 140 29 22 chrY 916830 917037 -50596547 + MER50-int LTR ERV1 3738 4539 -341 482 133 0 0 chrY 917030 917105 -50596479 + MER50-int LTR ERV1 2883 2957 -2989 * 792 210 0 6 chrY 917099 917256 -50596328 + MER50-int LTR ERV1 3689 3844 -3693 * 1052 219 19 0 chrY 917253 917458 -50596126 + MER50-int LTR ERV1 6180 6388 -817 546 345 15 8 chrY 917442 917709 -50595875 + MER50-int LTR ERV1 3744 4012 -273 * 776 263 44 19 chrY 917724 917929 -50595655 + MER50-int LTR ERV1 6985 7194 -11 380 273 109 0 chrY 917933 918043 -50595541 + MER50 LTR ERV1 1 122 -612 1206 284 128 36 chrY 918044 918653 -50594931 + MER50 LTR ERV1 26 690 -44 3055 293 109 19 chrY 918713 920615 -50592969 + L1M4b LINE L1 228 2263 -4696 1894 262 51 8 chrY 920585 921448 -50592136 + L1M4b LINE L1 3279 4178 -2779 * 2639 216 100 7 chrY 921567 922642 -50590942 - L1MB8 LINE L1 0 6178 4993 460 256 15 36 chrY 922681 922818 -50590766 + MERVL-C2 LTR ERVL 3288 3421 -2064 * 4825 223 23 2 chrY 922799 923766 -50589818 + MERVL-C2 LTR ERVL 3525 4511 -1253 1587 220 25 35 chrY 923766 924162 -50589422 - MER50 LTR ERV1 -1 733 342 1448 84 0 0 chrY 924163 924342 -50589242 - AluY SINE Alu 0 311 133 2499 68 0 0 chrY 924342 924649 -50588935 - AluY SINE Alu -4 307 1 862 185 13 13 chrY 924729 924886 -50588698 - MER50 LTR ERV1 -566 168 12 387 335 7 7 chrY 924977 925132 -50588452 - MER52A LTR ERV1 0 1755 1601 841 238 49 117 chrY 925135 925546 -50588038 - MER52A LTR ERV1 -281 1474 1092 * 1064 216 52 93 chrY 925531 925855 -50587729 - MER52A LTR ERV1 -785 970 660 9097 113 12 24 chrY 925857 926844 -50586740 - MER52-int LTR ERV1 0 7091 6124 1963 152 3 3 chrY 926844 927141 -50586443 - AluSx SINE Alu -14 298 2 9097 113 12 24 chrY 927141 927512 -50586072 - MER52-int LTR ERV1 -967 6124 5750 19314 159 27 17 chrY 927527 931073 -50582511 - MER52-int LTR ERV1 -2223 4868 1003 191 269 30 45 chrY 931088 931155 -50582429 + MIR3 SINE MIR 135 200 -8 2023 242 42 12 chrY 931155 931729 -50581855 + MERVL-C2 LTR ERVL 5167 5757 -7 1757 234 46 7 chrY 931738 932173 -50581411 + MLT2C2 LTR ERVL 11 462 -2 21 57 0 0 chrY 932199 932234 -50581350 + AT_rich Low_complexity Low_complexity 1 35 0 415 259 41 53 chrY 932279 932449 -50581135 + MER3 DNA MER1_type 28 195 -14 1492 290 37 27 chrY 932753 933342 -50580242 - L1MEc LINE L1 -5765 631 37 196 159 0 43 chrY 933427 933496 -50580088 + A-rich Low_complexity Low_complexity 4 69 0 2051 73 0 15 chrY 933625 933886 -50579698 - AluY SINE Alu -16 295 39 21 36 0 0 chrY 934275 934303 -50579281 + AT_rich Low_complexity Low_complexity 1 28 0 2306 97 10 0 chrY 935014 935314 -50578270 + AluSc SINE Alu 1 303 -6 294 238 203 21 chrY 935348 935491 -50578093 - L1MD3 LINE L1 0 7995 7827 227 88 70 44 chrY 935491 935605 -50577979 + (TA)n Simple_repeat Simple_repeat 2 118 0 785 223 102 28 chrY 935611 935894 -50577690 - L1MC3 LINE L1 -185 7600 7297 * 1033 277 20 3 chrY 935893 936189 -50577395 - L1MC3 LINE L1 -926 6859 6559 1143 216 37 11 chrY 936237 936505 -50577079 - L1MC3 LINE L1 -1210 6575 6301 1222 237 58 6 chrY 936537 936862 -50576722 - L1MB7 LINE L1 -20 6164 5823 3649 223 60 27 chrY 936944 938084 -50575500 - L1MC2 LINE L1 -144 6200 4980 554 106 0 0 chrY 938084 938178 -50575406 - L1PA15 LINE L1 -4 6161 6068 3649 223 60 27 chrY 938178 938896 -50574688 - L1MC2 LINE L1 -1364 4980 4288 4139 158 53 12 chrY 938896 939729 -50573855 + L1MA7 LINE L1 5425 6291 0 873 274 50 6 chrY 939742 940059 -50573525 - L1MC2 LINE L1 -3386 2760 2430 495 157 56 0 chrY 940073 940162 -50573422 - AluJ/FLAM SINE Alu -218 94 1 9615 224 63 16 chrY 940162 944015 -50569569 - L1PB4 LINE L1 -154 6705 2662 5825 236 20 7 chrY 943989 946231 -50567353 - L1PA13 LINE L1 -3160 3637 1355 * 2616 142 70 32 chrY 946228 946568 -50567016 + THE1-int LTR MaLR 811 1173 -407 * 2350 98 0 0 chrY 946568 946863 -50566721 + AluSg SINE Alu 1 295 -15 2616 142 70 32 chrY 946863 946965 -50566619 + THE1-int LTR MaLR 1173 1270 -310 6030 124 30 20 chrY 946977 948067 -50565517 + L1MA2 LINE L1 5206 6304 0 1074 267 49 25 chrY 948100 948897 -50564687 - L1M4 LINE L1 -3473 2909 2094 2494 261 68 29 chrY 948967 950150 -50563434 - L1M4 LINE L1 -4485 1899 777 915 234 98 51 chrY 950565 951013 -50562571 + L1ME1 LINE L1 4709 5177 -969 * 24913 153 26 17 chrY 951007 955242 -50558342 - L1PA8 LINE L1 -20 6467 2171 2193 61 0 0 chrY 955242 955505 -50558079 + AluY SINE Alu 36 298 -13 24913 153 26 17 chrY 955505 956919 -50556665 - L1PA8 LINE L1 -4316 2171 771 2503 191 14 14 chrY 956925 957423 -50556161 - L1PA8 LINE L1 -5373 502 5 1027 277 110 22 chrY 957537 957563 -50556021 + L1ME1 LINE L1 5285 5307 -859 222 37 0 0 chrY 957563 957590 -50555994 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1027 277 110 22 chrY 957590 958122 -50555462 + L1ME1 LINE L1 5307 5898 -268 2366 223 13 2 chrY 958124 958577 -50555007 + MLT2B2 LTR ERVL 1 458 -57 271 257 0 0 chrY 958577 958647 -50554937 + CT-rich Low_complexity Low_complexity 2 71 0 2650 113 19 16 chrY 959471 959897 -50553687 - L1PA8 LINE L1 -1089 5057 4631 6542 74 18 9 chrY 959899 960988 -50552596 + L1PA8 LINE L1 5060 6156 -16 2327 95 3 0 chrY 960992 961288 -50552296 - AluSg SINE Alu -13 297 1 2887 155 20 0 chrY 961313 961804 -50551780 - L1PA13 LINE L1 -11 6152 5652 3439 212 21 0 chrY 961854 962599 -50550985 + L1P4 LINE L1 3991 4751 -1395 2178 80 48 0 chrY 962601 962890 -50550694 + AluSg SINE Alu 1 303 -7 216 0 0 0 chrY 962896 962920 -50550664 + (A)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chrY 965178 965215 -50548369 + AT_rich Low_complexity Low_complexity 1 37 0 734 180 40 29 chrY 967108 967291 -50546293 + MIR SINE MIR 31 213 -49 2914 186 6 6 chrY 967390 968257 -50545327 + L1P4 LINE L1 4739 5603 -558 28 48 0 0 chrY 969380 969422 -50544162 + AT_rich Low_complexity Low_complexity 1 42 0 31 0 0 0 chrY 969565 969596 -50543988 + AT_rich Low_complexity Low_complexity 1 31 0 33 43 0 0 chrY 969635 969682 -50543902 + AT_rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chrY 969685 969711 -50543873 + (TG)n Simple_repeat Simple_repeat 1 26 0 534 342 16 5 chrY 969811 969998 -50543586 - MIR SINE MIR -56 206 18 2046 144 3 0 chrY 970287 970592 -50542992 + AluSx SINE Alu 1 306 -6 941 258 34 18 chrY 971059 971416 -50542168 + MSTD LTR MaLR 1 396 0 1892 155 117 8 chrY 971659 972045 -50541539 + MSTA LTR MaLR 1 428 0 31 26 0 0 chrY 972307 972345 -50541239 + AT_rich Low_complexity Low_complexity 1 38 0 359 256 56 50 chrY 972735 972915 -50540669 + L1MCc LINE L1 28 208 -6215 482 279 63 11 chrY 973183 973452 -50540132 + L1ME2 LINE L1 4960 5242 -904 1426 230 70 28 chrY 973475 973544 -50540040 + L1ME2 LINE L1 5663 5728 -436 2224 109 0 0 chrY 973544 973847 -50539737 + AluSc SINE Alu 2 304 -5 1426 230 70 28 chrY 973847 974250 -50539334 + L1ME2 LINE L1 5728 6155 -9 324 374 0 8 chrY 974290 974413 -50539171 + MER5A DNA MER1_type 64 185 -4 2058 268 51 45 chrY 974533 975290 -50538294 - L1MEc LINE L1 -4923 1473 706 2191 64 3 7 chrY 975290 975614 -50537970 + AluY SINE Alu 1 311 0 2058 268 51 45 chrY 975614 975913 -50537671 - L1MEc LINE L1 -5690 706 410 488 264 61 17 chrY 976065 976296 -50537288 - L1MDb LINE L1 -5000 1083 843 5048 129 15 4 chrY 976592 977390 -50536194 - L1PA16 LINE L1 0 6166 5360 444 301 81 56 chrY 977450 977859 -50535725 - L1MDb LINE L1 -5416 654 236 35 63 0 0 chrY 978923 978986 -50534598 + AT_rich Low_complexity Low_complexity 1 63 0 187 259 12 111 chrY 979124 979205 -50534379 - L2 LINE L2 -4 3309 3237 42 0 0 0 chrY 979381 979423 -50534161 + AT_rich Low_complexity Low_complexity 1 42 0 1645 142 82 51 chrY 979706 979889 -50533695 + THE1B LTR MaLR 1 177 -187 204 40 0 0 chrY 979889 979914 -50533670 + (TC)n Simple_repeat Simple_repeat 1 25 0 1645 142 82 51 chrY 979914 980083 -50533501 + THE1B LTR MaLR 177 364 0 7455 148 106 51 chrY 980085 981580 -50532004 + THE1B-int LTR MaLR 3 1580 0 1603 157 74 44 chrY 981580 981944 -50531640 + THE1C LTR MaLR 1 375 0 1659 265 40 19 chrY 981945 982416 -50531168 + LTR40a LTR ERVL 37 517 -2 2624 183 66 74 chrY 983298 983518 -50530066 + MER67B LTR ERV1 1 221 -440 2757 118 47 2 chrY 983518 983983 -50529601 - LTR19A LTR ERV1 0 486 1 2624 183 66 74 chrY 983983 984089 -50529495 + MER67B LTR ERV1 221 326 -335 2662 48 0 0 chrY 984089 984400 -50529184 - AluY SINE Alu 0 311 1 2624 183 66 74 chrY 984400 984738 -50528846 + MER67B LTR ERV1 326 661 0 281 360 48 0 chrY 985391 985538 -50528046 + MIR SINE MIR 30 183 -79 1746 179 107 87 chrY 985540 986128 -50527456 + MER4A LTR ERV1 1 600 0 202 390 77 16 chrY 986355 986537 -50527047 + L3 LINE CR1 115 307 -1270 339 352 138 15 chrY 987116 987312 -50526272 + L3 LINE CR1 473 692 -885 351 391 87 16 chrY 987401 987713 -50525871 + L3 LINE CR1 1235 1568 -9 24 0 0 0 chrY 987757 987781 -50525803 + AT_rich Low_complexity Low_complexity 1 24 0 2397 100 42 50 chrY 987959 988339 -50525245 + MER51B LTR ERV1 1 377 0 2421 148 76 17 chrY 988609 989068 -50524516 - LTR19A LTR ERV1 0 486 1 258 376 11 0 chrY 989386 989479 -50524105 - MIR3 SINE MIR -102 106 13 22 35 0 0 chrY 991479 991508 -50522076 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chrY 991562 991600 -50521984 + AT_rich Low_complexity Low_complexity 1 38 0 257 280 76 0 chrY 993091 993209 -50520375 - L1MC/D LINE L1 -2015 5793 5667 26 0 0 0 chrY 993209 993235 -50520349 + AT_rich Low_complexity Low_complexity 1 26 0 254 299 17 34 chrY 993251 993368 -50520216 - L1MC/D LINE L1 -2200 5585 5471 641 261 67 15 chrY 993950 994145 -50519439 - MIR SINE MIR -57 205 1 1541 201 48 20 chrY 994320 994712 -50518872 + L1MB1 LINE L1 5761 6163 -5 225 0 0 0 chrY 995371 995396 -50518188 + (CA)n Simple_repeat Simple_repeat 2 26 0 348 339 46 0 chrY 995538 995647 -50517937 - L2 LINE L2 -1 3271 3158 323 365 52 16 chrY 996171 996363 -50517221 - MIR SINE MIR -19 243 45 1535 80 0 68 chrY 996998 997081 -50516503 + L1MA1 LINE L1 6057 6144 -158 2102 126 0 3 chrY 997081 997391 -50516193 - AluSx SINE Alu -3 309 1 1535 80 0 68 chrY 997391 997571 -50516013 + L1MA1 LINE L1 6144 6302 0 1338 153 36 0 chrY 998130 998352 -50515232 + MER30 DNA MER1_type 1 230 0 3143 213 50 48 chrY 998780 999614 -50513970 - L1MA10 LINE L1 -3 6331 5496 1988 91 66 3 chrY 999614 999900 -50513684 - AluSx SINE Alu -8 304 1 3501 212 85 24 chrY 999948 1000416 -50513168 - L1MA8 LINE L1 -10 6281 5843 441 0 0 0 chrY 1000416 1000465 -50513119 + (TA)n Simple_repeat Simple_repeat 1 49 0 3501 212 85 24 chrY 1000465 1001119 -50512465 - L1MA8 LINE L1 -448 5843 5092 827 246 10 0 chrY 1001108 1001303 -50512281 + L1 LINE L1 4030 4226 -1920 * 7194 215 176 12 chrY 1001328 1003076 -50510508 + L1M1 LINE L1 13 2046 -5519 * 10659 191 58 42 chrY 1003073 1004165 -50509419 + L1M1 LINE L1 2565 3638 -3927 180 97 0 0 chrY 1004165 1004196 -50509388 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10659 191 58 42 chrY 1004196 1005030 -50508554 + L1M1 LINE L1 3638 4457 -3108 1039 116 22 6 chrY 1005030 1005211 -50508373 + L1MA1 LINE L1 6119 6302 0 10659 191 58 42 chrY 1005211 1005991 -50507593 + L1M1 LINE L1 4457 5223 -2342 639 140 0 0 chrY 1005991 1006091 -50507493 - FLAM_C SINE Alu -12 131 32 10659 191 58 42 chrY 1006091 1007407 -50506177 + L1M1 LINE L1 5223 6753 -812 236 164 0 55 chrY 1007436 1007491 -50506093 + Alu SINE Alu 251 302 0 2896 176 14 9 chrY 1007509 1008078 -50505506 + L1 LINE L1 4553 5124 -1022 2003 141 3 3 chrY 1008122 1008140 -50505444 - AluSx SINE Alu 0 312 295 186 43 0 0 chrY 1008140 1008163 -50505421 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2003 141 3 3 chrY 1008163 1008456 -50505128 - AluSx SINE Alu -16 296 1 26 30 0 0 chrY 1008860 1008893 -50504691 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 1009119 1009140 -50504444 + AT_rich Low_complexity Low_complexity 1 21 0 204 299 35 23 chrY 1009471 1009558 -50504026 - MIR SINE MIR -116 146 59 6152 156 5 1 chrY 1010625 1011589 -50501995 - L1PA14 LINE L1 -4895 2686 1719 9596 233 46 22 chrY 1011596 1012950 -50500634 + L1PA14 LINE L1 2711 4030 -3554 2010 164 13 24 chrY 1012950 1013327 -50500257 - THE1C LTR MaLR -2 373 1 9596 233 46 22 chrY 1013327 1014632 -50498952 + L1PA14 LINE L1 4030 5426 -2158 1830 176 83 18 chrY 1014632 1015150 -50498434 + MLT2A2 LTR ERVL 1 546 -8 6519 199 31 3 chrY 1015153 1015813 -50497771 + L1PA14 LINE L1 5421 6062 -1537 2652 20 7 0 chrY 1015813 1016116 -50497468 - AluY SINE Alu -6 305 1 6519 199 31 3 chrY 1016116 1016943 -50496641 + L1PA14 LINE L1 6062 6950 -649 324 0 0 0 chrY 1016943 1016979 -50496605 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6519 199 31 3 chrY 1016979 1017647 -50495937 + L1PA14 LINE L1 6950 7598 -1 33 0 0 0 chrY 1018437 1018470 -50495114 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 1018718 1018739 -50494845 + AT_rich Low_complexity Low_complexity 1 21 0 2359 65 0 32 chrY 1018994 1019304 -50494280 - AluY SINE Alu -11 300 1 434 303 12 37 chrY 1020189 1020430 -50493154 + L1MCb LINE L1 41 275 -5770 1629 220 39 21 chrY 1020526 1021197 -50492387 + L1M4 LINE L1 4880 5566 -618 1520 232 135 7 chrY 1021190 1021738 -50491846 + L1MC3 LINE L1 5376 5993 -2049 * 1087 194 90 19 chrY 1021751 1022019 -50491565 - MLT1C LTR MaLR -153 314 28 3154 213 57 18 chrY 1022058 1022890 -50490694 + L1MC3 LINE L1 6798 7661 -124 605 159 18 9 chrY 1022890 1023003 -50490581 - MER57A LTR ERV1 -289 114 1 1383 149 7 64 chrY 1023003 1023285 -50490299 - MER57A-int LTR ERV1 0 7537 7272 635 163 24 8 chrY 1023285 1023408 -50490176 - LTR54B LTR ERV1 -371 127 3 4725 91 12 0 chrY 1023408 1024058 -50489526 - MER57A-int LTR ERV1 -391 7146 6489 4913 88 9 54 chrY 1024069 1024452 -50489132 + L1PB1 LINE L1 5397 5796 -355 210 105 0 0 chrY 1024452 1024490 -50489094 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 4913 88 9 54 chrY 1024490 1024710 -50488874 + L1PB1 LINE L1 5796 5958 -193 2411 77 0 0 chrY 1024710 1025007 -50488577 + AluY SINE Alu 1 297 -14 4913 88 9 54 chrY 1025007 1025193 -50488391 + L1PB1 LINE L1 5958 6151 0 14244 104 26 19 chrY 1025206 1027062 -50486522 - MER57A-int LTR ERV1 -1423 6114 4272 180 0 0 0 chrY 1027062 1027082 -50486502 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1814 147 0 0 chrY 1027089 1027354 -50486230 - AluSx SINE Alu -37 275 11 14244 104 26 19 chrY 1027354 1027697 -50485887 - MER57A-int LTR ERV1 -3270 4267 3892 6642 138 24 16 chrY 1027699 1028797 -50484787 - MER57A-int LTR ERV1 -3761 2185 1079 1707 142 4 11 chrY 1028783 1029043 -50484541 - MER57A-int LTR ERV1 -5328 618 361 * 5273 139 7 12 chrY 1029036 1029844 -50483740 - MER57A-int LTR ERV1 -6731 806 3 2433 145 10 2 chrY 1029846 1030246 -50483338 - MER57A LTR ERV1 0 403 1 23 33 0 0 chrY 1030951 1030981 -50482603 + AT_rich Low_complexity Low_complexity 1 30 0 3660 115 13 0 chrY 1031119 1031666 -50481918 + MER41A LTR ERV1 1 554 0 1199 191 0 4 chrY 1031713 1031943 -50481641 + L1PB4 LINE L1 5928 6156 0 5951 55 1 18 chrY 1032491 1033270 -50480314 + MER4E LTR ERV1 1 766 0 21 0 0 0 chrY 1033662 1033683 -50479901 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrY 1033958 1034008 -50479576 + AT_rich Low_complexity Low_complexity 1 50 0 180 259 0 19 chrY 1035030 1035084 -50478500 + L2 LINE L2 1968 2020 -1294 825 332 82 47 chrY 1035221 1035282 -50478302 + L2 LINE L2 2284 2341 -972 327 25 0 0 chrY 1035282 1035322 -50478262 + (TG)n Simple_repeat Simple_repeat 1 40 0 825 332 82 47 chrY 1035322 1035534 -50478050 + L2 LINE L2 2341 2544 -769 2059 79 3 20 chrY 1035534 1035837 -50477747 + L1MA1 LINE L1 6004 6301 -1 825 332 82 47 chrY 1035837 1036324 -50477260 + L2 LINE L2 2544 3068 -245 1797 185 3 0 chrY 1039672 1040100 -50473484 + AluJo SINE Alu 8 436 0 518 176 107 23 chrY 1040187 1040318 -50473266 + L1MC5 LINE L1 7305 7446 -515 1360 176 0 0 chrY 1040326 1040547 -50473037 - AluJo SINE Alu -8 304 84 473 191 38 118 chrY 1040574 1040682 -50472902 + L1MC5 LINE L1 7478 7593 -368 288 111 0 0 chrY 1040682 1040727 -50472857 + (TG)n Simple_repeat Simple_repeat 1 45 0 473 191 38 118 chrY 1040727 1040749 -50472835 + L1MC5 LINE L1 7593 7615 -346 2515 71 0 3 chrY 1040749 1041057 -50472527 + AluY SINE Alu 1 307 -4 473 191 38 118 chrY 1041057 1041213 -50472371 + L1MC5 LINE L1 7615 7742 -219 * 1275 231 39 3 chrY 1041185 1041493 -50472091 - L1MD2 LINE L1 -13 6346 6028 747 242 7 0 chrY 1041515 1041668 -50471916 - AluJb SINE Alu -22 290 137 2746 232 40 11 chrY 1041671 1042399 -50471185 - L1MD2 LINE L1 -323 6036 5288 * 14720 112 7 16 chrY 1042385 1042400 -50471184 + L1P3 LINE L1 407 421 -6040 15498 95 4 5 chrY 1042400 1045404 -50468180 - L1PA7 LINE L1 -4 6150 3148 14720 112 7 16 chrY 1045404 1048158 -50465426 + L1P3 LINE L1 421 3158 -3303 2199 95 7 0 chrY 1048158 1048441 -50465143 + AluY SINE Alu 1 285 -26 14720 112 7 16 chrY 1048441 1048669 -50464915 + L1P3 LINE L1 3158 3387 -3074 524 167 28 9 chrY 1048664 1048772 -50464812 - L1MD2 LINE L1 -850 5296 5187 * 352 128 291 12 chrY 1048846 1048932 -50464652 + MER34 LTR ERV1 6 115 -427 698 255 129 32 chrY 1048935 1049297 -50464287 + MER39 LTR ERV1 221 665 -42 2295 282 137 26 chrY 1049331 1050761 -50462823 - L1MD2 LINE L1 -1036 5110 3522 1100 141 15 201 chrY 1050749 1050958 -50462626 - L1MDb LINE L1 -4997 1412 1336 * 1494 210 15 4 chrY 1050958 1051225 -50462359 - AluJb SINE Alu -38 274 5 1100 141 15 201 chrY 1051225 1051482 -50462102 - L1MDb LINE L1 -5073 1336 1033 252 204 0 0 chrY 1051497 1051546 -50462038 - MLT2B3 LTR ERVL 0 520 472 1900 211 79 7 chrY 1051686 1052099 -50461485 - MLT2B3 LTR ERVL -39 508 77 996 161 92 23 chrY 1052197 1052260 -50461324 - Ricksha DNA DNA -838 416 339 1430 161 41 7 chrY 1052260 1052742 -50460842 - ERVL-B3 LTR ERVL 0 5764 5233 980 145 0 11 chrY 1052747 1052926 -50460658 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 525 32 0 0 chrY 1052999 1053062 -50460522 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 195 156 0 47 chrY 1053097 1053161 -50460423 + T-rich Low_complexity Low_complexity 4 64 0 * 534 70 0 0 chrY 1053147 1053218 -50460366 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 779 101 0 23 chrY 1053290 1053419 -50460165 + (TTTCC)n Simple_repeat Simple_repeat 4 129 0 1652 193 3 31 chrY 1053419 1053781 -50459803 - AluJo SINE Alu 0 353 1 7875 175 16 5 chrY 1053781 1055113 -50458471 - ERVL-B3 LTR ERVL -522 5242 3896 338 217 0 0 chrY 1055172 1055241 -50458343 - MLT2B3 LTR ERVL -483 71 3 916 273 8 0 chrY 1055243 1055492 -50458092 - L1MDb LINE L1 -5387 1022 772 357 233 143 8 chrY 1055644 1055777 -50457807 + L1MC5 LINE L1 7751 7901 -60 1261 281 113 10 chrY 1056285 1056780 -50456804 + MLT1H LTR MaLR 1 546 -3 23 0 0 0 chrY 1056935 1056958 -50456626 + AT_rich Low_complexity Low_complexity 1 23 0 226 197 16 16 chrY 1057001 1057062 -50456522 - MLT1E2 LTR MaLR -2 624 564 975 233 79 98 chrY 1057062 1057469 -50456115 - MLT1E2 LTR MaLR -106 399 1 423 337 28 6 chrY 1057476 1057654 -50455930 - MIR SINE MIR -6 256 75 7847 208 40 19 chrY 1059908 1062005 -50451579 + L1MA9 LINE L1 2373 4514 -1632 4221 140 71 8 chrY 1062011 1062739 -50450845 - Tigger1 DNA MER2_type -1644 774 1 553 200 114 11 chrY 1062739 1062795 -50450789 + L1MDa LINE L1 1564 1613 -4927 5744 135 32 17 chrY 1062795 1063749 -50449835 + LTR5 LTR ERVK 1 969 0 553 200 114 11 chrY 1063749 1063867 -50449717 + L1MDa LINE L1 1613 1756 -4784 2953 211 21 6 chrY 1064135 1065089 -50448495 + L1MA9 LINE L1 4670 5642 -649 2981 106 31 18 chrY 1065089 1065543 -50448041 - LTR46 LTR ERV1 0 460 1 2136 124 3 3 chrY 1065543 1065850 -50447734 - LTR46-int LTR ERV1 0 6985 6679 17105 119 14 8 chrY 1066172 1068891 -50444693 - LTR46-int LTR ERV1 -312 6673 3938 * 18789 158 20 30 chrY 1068887 1071991 -50441593 - LTR46-int LTR ERV1 -3195 3790 659 3579 117 11 16 chrY 1072183 1072728 -50440856 - LTR46-int LTR ERV1 -6443 542 1 2962 99 50 14 chrY 1072728 1073172 -50440412 - LTR46 LTR ERV1 0 460 1 1005 136 0 0 chrY 1073173 1073328 -50440256 + L1MA9 LINE L1 5639 5793 -498 588 171 19 0 chrY 1073367 1073472 -50440112 - L1MA9 LINE L1 -216 6096 5990 2776 152 28 2 chrY 1073478 1073984 -50439600 + L1MA9 LINE L1 5794 6312 0 185 139 23 0 chrY 1074463 1074506 -50439078 + (TA)n Simple_repeat Simple_repeat 1 44 0 639 338 51 0 chrY 1074566 1074800 -50438784 + MIR SINE MIR 17 262 0 313 322 0 0 chrY 1074928 1075018 -50438566 - L1MC4 LINE L1 -1339 6703 6614 666 263 0 0 chrY 1075030 1075339 -50438245 + (TA)n Simple_repeat Simple_repeat 1 309 0 325 255 0 43 chrY 1075342 1075436 -50438148 - L1MC4 LINE L1 -1339 6703 6614 339 213 0 0 chrY 1075436 1075511 -50438073 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 301 194 16 0 chrY 1075513 1075575 -50438009 - L1MCa LINE L1 -4358 2068 2006 381 207 0 0 chrY 1075575 1075657 -50437927 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 321 280 17 34 chrY 1075660 1075778 -50437806 - L1MC4 LINE L1 -1339 6703 6588 337 237 0 43 chrY 1075784 1075877 -50437707 - L1MC4 LINE L1 -1339 6703 6615 435 141 0 0 chrY 1075880 1075958 -50437626 + (TA)n Simple_repeat Simple_repeat 2 79 0 1802 213 28 8 chrY 1075997 1076391 -50437193 - MER74A LTR ERVL -27 531 130 1086 230 77 34 chrY 1077155 1077533 -50436051 + MER110A LTR ERV1 22 415 -53 827 254 66 39 chrY 1077542 1077620 -50435964 + MER76 LTR ERV 244 318 -370 3164 192 68 0 chrY 1077620 1078239 -50435345 + MER67B LTR ERV1 1 661 0 827 254 66 39 chrY 1078239 1078576 -50435008 + MER76 LTR ERV 318 686 -2 411 299 57 16 chrY 1078644 1079069 -50434515 - L1ME LINE L1 -471 5699 5255 2029 175 23 17 chrY 1079336 1079797 -50433787 + MLT2A2 LTR ERVL 1 364 -89 211 283 67 0 chrY 1079910 1079970 -50433614 + L2 LINE L2 3205 3268 -4 385 285 81 8 chrY 1080509 1080632 -50432952 - MIR3 SINE MIR -7 201 70 1616 215 0 6 chrY 1084162 1084474 -50429110 - AluJb SINE Alu -2 310 1 1328 66 33 0 chrY 1084511 1084694 -50428890 + LTR19A LTR ERV1 1 189 -297 4371 64 9 0 chrY 1084694 1085239 -50428345 + HERVFH19I LTR ERV1 2167 2716 -5003 643 249 117 10 chrY 1085733 1085938 -50427646 + AluJo SINE Alu 84 310 -2 238 340 78 0 chrY 1086974 1087077 -50426507 + L2 LINE L2 2543 2653 -661 364 291 99 35 chrY 1087101 1087242 -50426342 + L2 LINE L2 3163 3312 -1 22 99 0 0 chrY 1087499 1087570 -50426014 + AT_rich Low_complexity Low_complexity 1 71 0 1258 188 0 9 chrY 1087744 1087967 -50425617 - AluJb SINE Alu -91 221 1 189 74 0 0 chrY 1089898 1089925 -50423659 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3783 257 115 11 chrY 1089926 1091981 -50421603 + L1PA15-16 LINE L1 10 1630 -5220 387 0 0 0 chrY 1091981 1092024 -50421560 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4806 179 85 19 chrY 1092096 1093532 -50420052 + L1PB3 LINE L1 640 1981 -4222 1906 154 39 22 chrY 1093532 1093896 -50419688 - THE1C LTR MaLR -3 372 3 8766 144 70 8 chrY 1093898 1095385 -50418199 - THE1C-int LTR MaLR 0 1580 2 1637 198 16 26 chrY 1095386 1095765 -50417819 - THE1C LTR MaLR 0 375 1 4806 179 85 19 chrY 1095765 1096122 -50417462 + L1PB3 LINE L1 1980 2547 -3656 4415 284 91 5 chrY 1096136 1097292 -50416292 + L1PA13 LINE L1 1 1255 -5532 18245 189 44 7 chrY 1097303 1102552 -50411032 + L1PA13 LINE L1 1399 6810 -4 10718 201 32 14 chrY 1102544 1102645 -50410939 + L1PB3 LINE L1 2540 2638 -3573 * 207 100 0 0 chrY 1102645 1102675 -50410909 + (CAA)n Simple_repeat Simple_repeat 1 30 0 10718 201 32 14 chrY 1102675 1103444 -50410140 + L1PB3 LINE L1 2638 3392 -2819 2422 128 17 6 chrY 1103444 1103804 -50409780 - THE1B LTR MaLR 0 364 1 10562 114 3 34 chrY 1103805 1105434 -50408150 - THE1B-int LTR MaLR -1 1579 1 2128 137 28 28 chrY 1105434 1105798 -50407786 - THE1B LTR MaLR 0 364 1 10718 201 32 14 chrY 1105798 1108526 -50405058 + L1PB3 LINE L1 3391 6211 0 23 33 0 0 chrY 1108536 1108566 -50405018 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrY 1109509 1109530 -50404054 + AT_rich Low_complexity Low_complexity 1 21 0 682 224 37 5 chrY 1109618 1109781 -50403803 - MER45A DNA AcHobo 0 178 1 21 36 0 0 chrY 1109820 1109848 -50403736 + AT_rich Low_complexity Low_complexity 1 28 0 2424 134 0 19 chrY 1109890 1110256 -50403328 - THE1B LTR MaLR -5 359 1 432 193 0 0 chrY 1110256 1110339 -50403245 - L1MD1 LINE L1 -79 6163 6081 2268 244 38 31 chrY 1110350 1110569 -50403015 - L1MD2 LINE L1 -226 6133 5917 1075 227 129 9 chrY 1110569 1110895 -50402689 - MLT1A1 LTR MaLR 0 365 1 2268 244 38 31 chrY 1110895 1111310 -50402274 - L1MD2 LINE L1 -442 5917 5495 198 286 61 113 chrY 1111698 1111911 -50401673 + L2 LINE L2 2538 2739 -575 217 333 105 35 chrY 1112261 1112375 -50401209 + L2 LINE L2 3143 3264 -8 22 0 0 0 chrY 1112428 1112450 -50401134 + AT_rich Low_complexity Low_complexity 1 22 0 455 320 70 31 chrY 1113813 1114169 -50399415 + L1ME LINE L1 5403 5772 -349 297 0 0 0 chrY 1115141 1115174 -50398410 + (CA)n Simple_repeat Simple_repeat 2 34 0 1482 236 64 0 chrY 1115178 1115521 -50398063 + MLT1A1 LTR MaLR 1 365 0 734 162 0 22 chrY 1116336 1116472 -50397112 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chrY 1116793 1116825 -50396759 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chrY 1117095 1117127 -50396457 + AT_rich Low_complexity Low_complexity 1 32 0 445 204 7 44 chrY 1117340 1117477 -50396107 + L1MC5 LINE L1 7801 7932 -29 306 189 57 132 chrY 1117497 1117656 -50395928 + L1ME LINE L1 5176 5322 -824 311 227 55 86 chrY 1117785 1117986 -50395598 + L1ME LINE L1 5674 5884 -280 185 257 14 54 chrY 1118455 1118529 -50395055 - MER5A DNA MER1_type -86 103 33 53 40 0 0 chrY 1119019 1119093 -50394491 + AT_rich Low_complexity Low_complexity 1 74 0 186 240 0 0 chrY 1119096 1119146 -50394438 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 240 233 50 0 chrY 1119147 1119207 -50394377 + L1MC4 LINE L1 6653 6715 -1327 1797 144 37 0 chrY 1119311 1119581 -50394003 + AluSx SINE Alu 1 280 -32 847 185 60 0 chrY 1119611 1119762 -50393822 + FRAM SINE Alu 1 157 -19 1635 179 103 58 chrY 1120030 1120476 -50393108 + MER31B LTR ERV1 1 466 0 424 301 7 29 chrY 1120957 1121093 -50392491 + L2 LINE L2 3178 3310 -3 4846 154 32 35 chrY 1121579 1122759 -50390825 + L1PB4 LINE L1 4975 6156 0 404 250 11 109 chrY 1123351 1123627 -50389957 - L1MC5 LINE L1 -51 7910 7662 1008 101 0 0 chrY 1124572 1124701 -50388883 - AluSq/x SINE Alu -184 129 1 2198 203 4 62 chrY 1124904 1125436 -50388148 + MLT1D LTR MaLR 3 503 -2 502 249 34 65 chrY 1127079 1127351 -50386233 - L1ME2 LINE L1 -16 6148 5887 575 237 0 0 chrY 1127370 1127467 -50386117 - MER2 DNA MER2_type -248 97 1 2078 273 82 26 chrY 1127467 1128347 -50385237 - L1ME2 LINE L1 -262 5902 5073 2130 129 0 0 chrY 1128347 1128642 -50384942 + AluSg SINE Alu 1 295 -15 2078 273 82 26 chrY 1128642 1129775 -50383809 - L1ME2 LINE L1 -1091 5073 3775 965 177 64 0 chrY 1129825 1130028 -50383556 - L1MC1 LINE L1 -5 6328 6113 1163 235 40 87 chrY 1130226 1130596 -50382988 + LTR49-int LTR ERV1 2068 2420 -3911 3686 192 8 39 chrY 1130604 1131340 -50382244 - MER50 LTR ERV1 -21 713 1 6466 171 15 13 chrY 1131340 1132484 -50381100 - MER50-int LTR ERV1 -8 7197 3899 288 315 0 9 chrY 1133501 1133612 -50379972 - MER50-int LTR ERV1 -2489 6430 6321 18978 245 50 51 chrY 1133783 1140123 -50373461 - MER50-int LTR ERV1 -933 6158 1 1950 185 0 22 chrY 1140125 1140487 -50373097 - MER50 LTR ERV1 -24 710 357 403 105 0 0 chrY 1140487 1140544 -50373040 + AluSp/q SINE Alu 181 237 -76 1406 81 34 64 chrY 1140545 1140885 -50372699 + MER4A-int LTR ERV1 764 1149 -5609 372 119 0 0 chrY 1140885 1140944 -50372640 + (TG)n Simple_repeat Simple_repeat 2 60 0 4110 104 48 13 chrY 1140955 1141665 -50371919 + MER4A-int LTR ERV1 1761 2495 -4103 540 183 122 0 chrY 1141665 1141780 -50371804 - LTR8 LTR ERV1 -434 257 129 2946 125 79 21 chrY 1141780 1142485 -50371099 + MER4A-int LTR ERV1 2840 3677 -2921 14804 117 51 10 chrY 1142488 1144977 -50368607 + MER4A-int LTR ERV1 3837 6428 -170 2215 115 7 0 chrY 1145260 1145564 -50368020 - AluSq SINE Alu -2 311 6 1066 160 11 5 chrY 1147127 1147315 -50366269 + MER4A-int LTR ERV1 6405 6593 -5 480 177 21 10 chrY 1147326 1147422 -50366162 + MER4A LTR ERV1 1 97 -567 * 1593 176 3 27 chrY 1147419 1147777 -50365807 + MER4A LTR ERV1 257 664 0 896 212 42 19 chrY 1147777 1148109 -50365475 - L1M1 LINE L1 -2704 4861 2678 1087 298 42 27 chrY 1148177 1148796 -50364788 - L1MEc LINE L1 -3151 3064 2431 2073 128 3 0 chrY 1148796 1149086 -50364498 - AluY SINE Alu -20 291 1 1087 298 42 27 chrY 1149086 1149204 -50364380 - L1MEc LINE L1 -3784 2431 2316 396 265 106 41 chrY 1149227 1149472 -50364112 - L1MEc LINE L1 -4081 2315 2055 794 292 95 23 chrY 1149473 1150083 -50363501 - L1MEc LINE L1 -4358 2038 1385 502 285 55 80 chrY 1150280 1150592 -50362992 - L1MEc LINE L1 -5090 1115 812 303 365 42 23 chrY 1150888 1151102 -50362482 - MIR SINE MIR -11 251 34 22 0 0 0 chrY 1151726 1151748 -50361836 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 1152895 1152916 -50360668 + AT_rich Low_complexity Low_complexity 1 21 0 646 293 106 24 chrY 1152972 1153518 -50360066 + HAL1 LINE L1 659 1249 -1258 3441 154 41 0 chrY 1153655 1154241 -50359343 - MER4B LTR ERV1 0 610 1 1618 160 15 15 chrY 1154241 1154509 -50359075 - MER4B-int LTR ERV1 0 6758 6491 * 6860 151 31 67 chrY 1154501 1156011 -50357573 - MER4B-int LTR ERV1 -181 6577 5122 3789 189 12 34 chrY 1156011 1156755 -50356829 - MER50 LTR ERV1 -6 728 1 1681 142 11 36 chrY 1156755 1157234 -50356350 - MER50-int LTR ERV1 -8 7197 4041 625 137 0 0 chrY 1157245 1157340 -50356244 - MER50-int LTR ERV1 -3212 3546 3452 7205 167 43 51 chrY 1157347 1158265 -50355319 - MER50-int LTR ERV1 -3431 3327 2403 2236 112 0 0 chrY 1158265 1158559 -50355025 + AluY SINE Alu 1 294 -17 7205 167 43 51 chrY 1158559 1158639 -50354945 - MER50-int LTR ERV1 -4355 2403 2324 2202 120 0 0 chrY 1158639 1158940 -50354644 - AluSg SINE Alu -9 301 1 7205 167 43 51 chrY 1158940 1159464 -50354120 - MER50-int LTR ERV1 -4434 2324 1797 2168 124 0 3 chrY 1159464 1159770 -50353814 - AluSg SINE Alu -5 305 1 7205 167 43 51 chrY 1159770 1161314 -50352270 - MER50-int LTR ERV1 -4961 1797 180 3305 146 48 2 chrY 1161402 1161943 -50351641 - MER4B LTR ERV1 0 610 45 686 118 10 232 chrY 1161943 1162150 -50351434 - MLT2A2 LTR ERVL 0 444 287 747 307 154 44 chrY 1162211 1162853 -50350731 + HAL1 LINE L1 1792 2504 -3 502 279 92 85 chrY 1163441 1163724 -50349860 + L2 LINE L2 3029 3313 0 184 264 75 0 chrY 1163789 1163842 -50349742 + MIR SINE MIR 85 141 -121 1564 223 76 49 chrY 1164230 1164455 -50349129 + MLT1D LTR MaLR 4 222 -283 186 71 0 0 chrY 1164455 1164483 -50349101 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1564 223 76 49 chrY 1164483 1164746 -50348838 + MLT1D LTR MaLR 222 505 0 25 0 0 0 chrY 1165121 1165146 -50348438 + AT_rich Low_complexity Low_complexity 1 25 0 202 388 72 26 chrY 1165382 1165771 -50347813 - L2 LINE L2 -642 2672 2266 1656 178 165 8 chrY 1165928 1166298 -50347286 - MSTA LTR MaLR 0 428 1 8414 161 8 56 chrY 1166298 1167233 -50346351 - MSTA-int LTR MaLR 0 1580 755 2711 29 0 3 chrY 1167233 1167545 -50346039 + AluY SINE Alu 1 311 0 8414 161 8 56 chrY 1167545 1168265 -50345319 - MSTA-int LTR MaLR -825 755 3 1789 168 146 8 chrY 1168268 1168644 -50344940 - MSTA LTR MaLR 0 428 1 1331 288 65 17 chrY 1168644 1169124 -50344460 - LTR40a LTR ERVL -16 503 1 879 278 70 23 chrY 1169289 1169656 -50343928 - L1ME LINE L1 -519 5643 5182 33 25 0 0 chrY 1169656 1169696 -50343888 + AT_rich Low_complexity Low_complexity 1 40 0 879 278 70 23 chrY 1169696 1169929 -50343655 - L1ME LINE L1 -980 5182 4961 1544 292 69 51 chrY 1170071 1171791 -50341793 - L1ME LINE L1 -1987 4159 2409 1308 266 58 76 chrY 1171795 1172517 -50341067 + L1ME3A LINE L1 5462 6170 0 26 0 0 0 chrY 1172951 1172977 -50340607 + AT_rich Low_complexity Low_complexity 1 26 0 3178 141 41 23 chrY 1173072 1173634 -50339950 + MER4B LTR ERV1 3 574 -36 22 70 0 0 chrY 1174244 1174287 -50339297 + AT_rich Low_complexity Low_complexity 1 43 0 250 381 15 8 chrY 1174350 1174484 -50339100 - MIR SINE MIR -47 215 81 2458 138 58 22 chrY 1174719 1175168 -50338416 - MER4C LTR ERV1 0 465 1 2411 75 0 3 chrY 1175479 1175787 -50337797 + AluY SINE Alu 1 307 -4 31 76 0 0 chrY 1175940 1176006 -50337578 + AT_rich Low_complexity Low_complexity 1 66 0 23 33 0 0 chrY 1176477 1176507 -50337077 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrY 1176750 1176772 -50336812 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chrY 1177240 1177271 -50336313 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chrY 1177421 1177458 -50336126 + AT_rich Low_complexity Low_complexity 1 37 0 1458 277 123 11 chrY 1177670 1178233 -50335351 - MLT1E2 LTR MaLR 0 626 1 1877 171 3 0 chrY 1178665 1178974 -50334610 + AluSx SINE Alu 1 310 -2 1363 235 17 32 chrY 1179344 1179493 -50334091 + L1MB3 LINE L1 3392 3542 -2604 2014 152 91 15 chrY 1179493 1179889 -50333695 - MSTA LTR MaLR 0 428 3 7950 163 34 42 chrY 1179891 1180971 -50332613 - MSTA-int LTR MaLR 0 1580 516 213 39 0 0 chrY 1180971 1180997 -50332587 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 7950 163 34 42 chrY 1180997 1181507 -50332077 - MSTA-int LTR MaLR -1064 516 3 1812 149 79 82 chrY 1181509 1181747 -50331837 - MSTA LTR MaLR 0 428 190 2129 101 50 3 chrY 1181747 1182044 -50331540 - AluY SINE Alu 0 311 1 1812 149 79 82 chrY 1182044 1182234 -50331350 - MSTA LTR MaLR -238 190 1 1363 235 17 32 chrY 1182234 1182542 -50331042 + L1MB3 LINE L1 3544 3848 -2298 8487 216 15 2 chrY 1182552 1184108 -50329476 + L1PA13 LINE L1 9 1585 -5996 3616 210 15 17 chrY 1184111 1185248 -50328336 + L1PA13 LINE L1 2405 3560 -4024 * 9882 174 18 25 chrY 1185236 1188204 -50325380 + L1PA13 LINE L1 4648 7595 -6 4135 230 52 30 chrY 1188230 1188448 -50325136 + L1MB3 LINE L1 3876 4088 -2095 1718 225 10 20 chrY 1188448 1188848 -50324736 - MSTD LTR MaLR 0 396 1 4135 230 52 30 chrY 1188848 1189040 -50324544 + L1MB3 LINE L1 4088 4274 -1909 234 0 0 0 chrY 1189040 1189066 -50324518 + (CA)n Simple_repeat Simple_repeat 2 27 0 4135 230 52 30 chrY 1189066 1190030 -50323554 + L1MB3 LINE L1 4274 5216 -967 1073 248 39 19 chrY 1190030 1190393 -50323191 - MLT1A2 LTR MaLR -4 370 1 4135 230 52 30 chrY 1190393 1191289 -50322295 + L1MB3 LINE L1 5216 6183 0 180 329 13 13 chrY 1192397 1192473 -50321111 + MIR SINE MIR 187 262 0 572 383 82 21 chrY 1192926 1193755 -50319829 - L2 LINE L2 -213 3059 2180 394 299 57 53 chrY 1193853 1194154 -50319430 + L1M4 LINE L1 3684 3985 -2161 614 213 164 7 chrY 1194186 1194393 -50319191 - MER66A LTR ERV1 -257 341 97 1512 179 51 0 chrY 1194461 1194734 -50318850 - MER66A-int LTR ERV1 0 6676 6390 324 172 16 0 chrY 1194723 1194787 -50318797 - MER66A-int LTR ERV1 -1735 4941 4877 * 7545 196 107 86 chrY 1194789 1197307 -50316277 - MER66A-int LTR ERV1 -1758 4918 2348 13155 143 16 11 chrY 1197337 1200427 -50313157 - L1PA10 LINE L1 -3 6165 3044 10099 193 49 29 chrY 1200449 1202567 -50311017 - MER66A-int LTR ERV1 -4516 2160 1 1334 202 48 94 chrY 1202567 1203001 -50310583 - MER66A LTR ERV1 0 478 97 360 287 33 16 chrY 1203103 1203225 -50310359 + L1MC4 LINE L1 6580 6703 -1339 216 278 0 14 chrY 1203225 1203261 -50310323 + (TA)n Simple_repeat Simple_repeat 1 36 -35 1249 209 62 38 chrY 1203261 1203600 -50309984 + MER7A DNA MER2_type 1 345 -1 216 278 0 14 chrY 1203600 1203635 -50309949 + (TA)n Simple_repeat Simple_repeat 36 71 0 1179 176 0 39 chrY 1203715 1203948 -50309636 + Tigger5 DNA MER2_type 2085 2308 -15 192 40 0 0 chrY 1203959 1203984 -50309600 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 0 0 chrY 1203985 1204043 -50309541 + (TATG)n Simple_repeat Simple_repeat 3 60 0 1951 119 0 17 chrY 1204291 1204629 -50308955 + AluY SINE Alu 1 311 0 29 0 0 0 chrY 1204667 1204696 -50308888 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrY 1204925 1204949 -50308635 + AT_rich Low_complexity Low_complexity 1 24 0 651 259 95 69 chrY 1205057 1205751 -50307833 + L1MC/D LINE L1 3997 4708 -1438 459 215 117 78 chrY 1205795 1206000 -50307584 - L2 LINE L2 0 3313 3101 321 245 1 95 chrY 1206336 1206459 -50307125 + L1MC/D LINE L1 5476 5589 -540 591 211 37 0 chrY 1206639 1206748 -50306836 - FLAM_A SINE Alu -18 115 3 2827 297 128 38 chrY 1206933 1208484 -50305100 + L2 LINE L2 1171 2861 -453 529 290 26 59 chrY 1208543 1208815 -50304769 + L2 LINE L2 3051 3313 0 3464 215 96 17 chrY 1209960 1210320 -50303264 - L1MB7 LINE L1 -8 6176 5846 1788 198 40 0 chrY 1210320 1210669 -50302915 + MLT1A1 LTR MaLR 1 363 -2 3464 215 96 17 chrY 1210669 1211389 -50302195 - L1MB7 LINE L1 -338 5846 5028 435 19 0 0 chrY 1212397 1212449 -50301135 + (CA)n Simple_repeat Simple_repeat 1 52 0 378 315 129 18 chrY 1212871 1213211 -50300373 - L1ME4a LINE L1 -14 6107 5730 21 57 0 0 chrY 1213979 1214014 -50299570 + AT_rich Low_complexity Low_complexity 1 35 0 2201 90 0 0 chrY 1216321 1216609 -50296975 - AluY SINE Alu -23 288 1 1362 207 82 4 chrY 1216658 1216938 -50296646 + AluJb SINE Alu 1 302 -10 30 27 0 0 chrY 1216938 1216975 -50296609 + AT_rich Low_complexity Low_complexity 1 37 0 615 12 0 0 chrY 1217003 1217083 -50296501 + AluYa5/8 SINE Alu 231 310 -1 22 56 0 0 chrY 1218437 1218473 -50295111 + AT_rich Low_complexity Low_complexity 1 36 0 1590 261 76 32 chrY 1218774 1219342 -50294242 + MLT1E LTR MaLR 1 593 0 13964 159 23 42 chrY 1219498 1219702 -50293882 - L1PA13 LINE L1 0 6163 5957 2072 128 0 0 chrY 1219702 1219991 -50293593 - AluSg SINE Alu -21 289 1 13964 159 23 42 chrY 1219991 1221459 -50292125 - L1PA13 LINE L1 -206 5957 4463 2534 33 13 0 chrY 1221459 1221761 -50291823 - AluY SINE Alu 0 311 6 13964 159 23 42 chrY 1221761 1221855 -50291729 - L1PA13 LINE L1 -1700 4463 4369 2296 96 0 6 chrY 1221855 1222167 -50291417 - AluSx SINE Alu -2 310 1 13964 159 23 42 chrY 1222167 1223442 -50290142 - L1PA13 LINE L1 -1794 4369 3072 1832 180 0 0 chrY 1223442 1223753 -50289831 - AluSx SINE Alu -1 311 1 13964 159 23 42 chrY 1223753 1223773 -50289811 - L1PA13 LINE L1 -3091 3072 3053 1773 182 3 0 chrY 1223773 1224081 -50289503 - AluSx SINE Alu -3 309 1 13964 159 23 42 chrY 1224081 1224918 -50288666 - L1PA13 LINE L1 -3110 3053 2341 195 114 0 0 chrY 1225022 1225057 -50288527 + (A)n Simple_repeat Simple_repeat 1 35 0 774 297 36 5 chrY 1225881 1226103 -50287481 + MER69 DNA AcHobo 304 532 -694 449 200 30 20 chrY 1226109 1226209 -50287375 + MER69 DNA AcHobo 801 901 -1625 1382 207 121 12 chrY 1226219 1226716 -50286868 + MER69 DNA AcHobo 1708 2258 -268 4807 181 16 12 chrY 1226765 1227195 -50286389 - L1PA16 LINE L1 -8 6158 5731 5869 61 30 13 chrY 1227195 1227962 -50285622 - LTR17 LTR ERV1 0 780 1 4807 181 16 12 chrY 1227962 1228490 -50285094 - L1PA16 LINE L1 -435 5731 5199 421 217 19 83 chrY 1228490 1228647 -50284937 + MER69 DNA AcHobo 2371 2517 -9 194 366 78 35 chrY 1228668 1228810 -50284774 + MIR3 SINE MIR 33 180 -28 2192 188 49 79 chrY 1228816 1229472 -50284112 + MER92B LTR ERV1 1 636 0 395 289 157 38 chrY 1230849 1231008 -50282576 + MER5A DNA MER1_type 11 188 -1 1049 302 132 21 chrY 1231125 1231307 -50282277 - L2 LINE L2 -4 3309 3149 1549 219 7 47 chrY 1231307 1231713 -50281871 + MLT1B LTR MaLR 1 390 0 1049 302 132 21 chrY 1231713 1232142 -50281442 - L2 LINE L2 -164 3149 2621 472 110 14 0 chrY 1232288 1232361 -50281223 - MADE1 DNA Mariner -1 79 6 310 274 176 19 chrY 1232381 1232911 -50280673 - L1M4 LINE L1 -901 5245 4633 2356 84 0 7 chrY 1232913 1233223 -50280361 + AluY SINE Alu 1 308 -3 1609 142 76 44 chrY 1233273 1233617 -50279967 - THE1C LTR MaLR -20 355 1 345 304 104 55 chrY 1233912 1234113 -50279471 - MIR SINE MIR -3 259 49 21 36 0 0 chrY 1234222 1234250 -50279334 + AT_rich Low_complexity Low_complexity 1 28 0 468 0 0 0 chrY 1235284 1235336 -50278248 + (TA)n Simple_repeat Simple_repeat 2 53 0 1442 238 85 25 chrY 1235383 1235826 -50277758 - MLT2B1 LTR ERVL -40 461 4 16474 190 32 20 chrY 1235833 1239038 -50274546 - ERVL-B1 LTR ERVL -11 5753 2510 953 238 32 69 chrY 1239042 1239319 -50274265 - MLT2B1 LTR ERVL -253 267 1 408 273 187 16 chrY 1239515 1239702 -50273882 - MIR SINE MIR -5 257 39 315 248 134 13 chrY 1240315 1240464 -50273120 - MER58C DNA MER1_type -1 214 48 25 75 0 0 chrY 1240887 1240940 -50272644 + AT_rich Low_complexity Low_complexity 1 53 0 671 119 0 0 chrY 1241059 1241160 -50272424 - LTR12 LTR ERV1 -133 581 481 378 224 42 0 chrY 1241161 1241267 -50272317 - LTR30 LTR ERV1 -79 677 544 660 218 8 77 chrY 1241267 1241501 -50272083 - LTR12 LTR ERV1 -444 270 53 235 269 0 0 chrY 1241501 1241553 -50272031 - LTR30 LTR ERV1 -670 52 1 22 56 0 0 chrY 1242115 1242151 -50271433 + AT_rich Low_complexity Low_complexity 1 36 0 200 238 0 0 chrY 1242180 1242222 -50271362 + (TAA)n Simple_repeat Simple_repeat 2 43 0 243 252 129 49 chrY 1242222 1242508 -50271076 + L1M4 LINE L1 2207 2515 -3631 335 342 97 51 chrY 1242591 1242828 -50270756 + L1M4 LINE L1 -260 4294967283 -6293 262 149 21 0 chrY 1243177 1243224 -50270360 + L1M4 LINE L1 619 666 -5718 2567 234 68 40 chrY 1243225 1243385 -50270199 + L1M4 LINE L1 777 931 -5372 198 0 0 0 chrY 1243385 1243407 -50270177 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2567 234 68 40 chrY 1243407 1244202 -50269382 + L1M4 LINE L1 931 1786 -4517 1208 256 36 31 chrY 1244202 1244555 -50269029 - MSTD LTR MaLR 0 396 44 405 0 0 0 chrY 1244555 1244600 -50268984 + (CA)n Simple_repeat Simple_repeat 2 46 0 1208 256 36 31 chrY 1244600 1244613 -50268971 - MSTD LTR MaLR -352 44 33 4830 208 44 12 chrY 1244613 1245682 -50267902 + L1MC3 LINE L1 6573 7675 -110 2062 115 0 26 chrY 1245686 1245990 -50267594 + AluSg SINE Alu 1 296 -14 205 184 0 0 chrY 1246354 1246392 -50267192 + (CATA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chrY 1246608 1246646 -50266938 + AT_rich Low_complexity Low_complexity 1 38 0 704 108 0 0 chrY 1246653 1246755 -50266829 - LTR12 LTR ERV1 -132 582 481 310 293 10 0 chrY 1246756 1246855 -50266729 - LTR30 LTR ERV1 -79 643 544 649 168 153 31 chrY 1246858 1247054 -50266530 - LTR12 LTR ERV1 -440 274 55 960 148 6 22 chrY 1247055 1247237 -50266347 - LTR12 LTR ERV1 -483 231 53 232 250 0 0 chrY 1247237 1247289 -50266295 - LTR30 LTR ERV1 -670 52 1 192 77 0 0 chrY 1249014 1249040 -50264544 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 21 57 0 0 chrY 1249264 1249299 -50264285 + AT_rich Low_complexity Low_complexity 1 35 0 543 241 103 0 chrY 1249341 1249486 -50264098 - MLT1A1 LTR MaLR 0 624 465 2198 86 3 16 chrY 1249770 1250074 -50263510 + AluY SINE Alu 12 311 0 1039 156 28 104 chrY 1250074 1250324 -50263260 - LOR1b LTR ERV1 -203 258 41 32 43 0 0 chrY 1250656 1250702 -50262882 + AT_rich Low_complexity Low_complexity 1 46 0 224 283 0 0 chrY 1250871 1250924 -50262660 - MIR SINE MIR -187 75 23 2179 113 3 6 chrY 1250924 1251235 -50262349 - AluSg SINE Alu 0 310 1 1586 202 35 11 chrY 1251331 1251678 -50261906 - MLT1A1 LTR MaLR -10 355 1 1837 109 0 0 chrY 1251997 1252245 -50261339 - AluSc SINE Alu -23 286 39 1340 291 85 6 chrY 1252764 1253234 -50260350 + L2 LINE L2 1780 2286 -1028 262 355 57 28 chrY 1253233 1253374 -50260210 + L2 LINE L2 3168 3312 -1 * 696 211 75 12 chrY 1254436 1254597 -50258987 + MER5B DNA MER1_type 2 172 -6 325 256 33 11 chrY 1254992 1255082 -50258502 + MER5A DNA MER1_type 96 187 -2 1802 207 56 25 chrY 1255159 1255603 -50257981 + LOR1b LTR ERV1 1 458 -3 21 36 0 0 chrY 1256066 1256094 -50257490 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 1256220 1256241 -50257343 + AT_rich Low_complexity Low_complexity 1 21 0 313 321 38 46 chrY 1256250 1256490 -50257094 - L1MC/D LINE L1 -2019 5789 5552 1781 324 62 15 chrY 1256636 1257414 -50256170 - ERVL LTR ERVL -1533 4231 3418 622 331 65 20 chrY 1257783 1258031 -50255553 - LTR33 LTR ERVL -237 284 26 329 204 49 21 chrY 1258046 1258188 -50255396 + (TA)n Simple_repeat Simple_repeat 1 146 0 263 311 54 56 chrY 1258214 1258805 -50254779 - L1MC/D LINE L1 -1449 4697 4108 1303 219 50 14 chrY 1258935 1259213 -50254371 + AluJo SINE Alu 1 288 -24 2268 262 16 8 chrY 1259595 1260305 -50253279 - L1MC/D LINE L1 -2400 3746 3032 432 338 76 60 chrY 1260368 1261146 -50252438 + L1M4 LINE L1 3604 4393 -1753 10302 175 18 65 chrY 1261158 1263236 -50250348 + L1PA15-16 LINE L1 5 1986 -4863 262 100 0 0 chrY 1263321 1263361 -50250223 - L1PA7 LINE L1 -5 6149 6110 7068 229 29 29 chrY 1263463 1266024 -50247560 - L1MA9 LINE L1 -372 5940 3393 221 252 0 8 chrY 1266047 1266178 -50247406 + (TA)n Simple_repeat Simple_repeat 2 131 0 280 314 21 0 chrY 1266204 1266344 -50247240 + (TA)n Simple_repeat Simple_repeat 1 143 0 495 252 125 22 chrY 1266350 1266719 -50246865 - L1MC/D LINE L1 -3506 2640 2234 255 103 0 0 chrY 1266765 1266804 -50246780 + (CA)n Simple_repeat Simple_repeat 2 40 0 1162 229 41 25 chrY 1266808 1267122 -50246462 - L1MD1 LINE L1 -152 6090 5772 13171 185 43 28 chrY 1267130 1273976 -50239608 - L1M1 LINE L1 -743 6822 17 263 350 36 29 chrY 1274207 1274347 -50239237 + L2 LINE L2 3101 3241 -31 22 35 0 0 chrY 1275098 1275127 -50238457 + AT_rich Low_complexity Low_complexity 1 29 0 2210 96 0 39 chrY 1275275 1275587 -50237997 + AluY SINE Alu 1 300 -11 1971 134 0 10 chrY 1275640 1275930 -50237654 + AluSx SINE Alu 1 287 -25 1547 209 0 20 chrY 1276046 1276347 -50237237 + AluJo SINE Alu 1 295 -17 1657 171 0 4 chrY 1276689 1276964 -50236620 - L1PB3 LINE L1 -2 6152 5879 2013 205 24 7 chrY 1276965 1277380 -50236204 - MER50 LTR ERV1 -23 711 290 1463 138 5 9 chrY 1277380 1277604 -50235980 - MER4A LTR ERV1 0 664 442 10181 123 43 23 chrY 1277604 1279448 -50234136 - MER4A-int LTR ERV1 -874 5724 3844 30348 107 9 25 chrY 1279448 1285231 -50228353 + L1PA7 LINE L1 1 5775 -701 2314 88 0 3 chrY 1285231 1285536 -50228048 + AluSc SINE Alu 4 307 -2 30348 107 9 25 chrY 1285536 1286228 -50227356 + L1PA7 LINE L1 5775 6476 0 1479 169 45 34 chrY 1286238 1286617 -50226967 - MER4A-int LTR ERV1 -2912 3686 3304 1704 144 70 3 chrY 1286645 1287033 -50226551 - MER4A-int LTR ERV1 -3448 3150 2737 1157 208 5 0 chrY 1287033 1287249 -50226335 + LTR8 LTR ERV1 1 217 -474 11314 122 117 46 chrY 1287255 1289591 -50223993 - MER4A-int LTR ERV1 -4095 2503 1 1860 121 6 22 chrY 1289605 1289945 -50223639 - MER4A LTR ERV1 -11 653 261 654 121 0 10 chrY 1289945 1290044 -50223540 - MER4A LTR ERV1 -566 98 1 1568 171 29 0 chrY 1290045 1290325 -50223259 - MER50 LTR ERV1 -446 288 1 1449 121 8 15 chrY 1290325 1290590 -50222994 - MER50-int LTR ERV1 -8 7197 6849 6918 116 29 38 chrY 1290590 1291741 -50221843 - MER50-int LTR ERV1 -1007 6198 5059 330 115 37 7 chrY 1291731 1291799 -50221785 - MER50-int LTR ERV1 -1499 4962 4381 * 1786 139 17 10 chrY 1291799 1292094 -50221490 + THE1A LTR MaLR 1 297 -58 1719 97 0 0 chrY 1292100 1292337 -50221247 + THE1A-int LTR MaLR 206 442 -1138 8057 213 38 18 chrY 1292343 1294114 -50219470 - MER50-int LTR ERV1 -2612 4593 2788 3831 156 32 47 chrY 1294118 1294251 -50219333 - MER50-int LTR ERV1 -5365 1840 1707 2059 102 11 7 chrY 1294251 1294561 -50219023 + AluSp SINE Alu 1 311 0 3831 156 32 47 chrY 1294561 1295152 -50218432 - MER50-int LTR ERV1 -5498 1707 1126 3075 179 20 6 chrY 1295174 1296086 -50217498 - MER50-int LTR ERV1 -6217 988 1 3646 170 33 35 chrY 1296086 1296822 -50216762 - MER50 LTR ERV1 0 734 1 383 167 0 0 chrY 1296822 1296882 -50216702 - L1PB3 LINE L1 -277 5877 5818 22 0 0 0 chrY 1297054 1297076 -50216508 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrY 1297216 1297258 -50216326 + AT_rich Low_complexity Low_complexity 1 42 0 1352 123 44 0 chrY 1297479 1297682 -50215902 + MER30 DNA MER1_type 1 212 -18 1091 220 5 59 chrY 1298234 1298608 -50214976 - MER31B LTR ERV1 0 466 1 224 271 0 0 chrY 1300487 1300535 -50213049 + L2 LINE L2 3213 3260 -12 222 113 0 57 chrY 1301272 1301325 -50212259 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 494 116 0 0 chrY 1301341 1301410 -50212174 - AluS SINE Alu -15 294 226 1521 180 27 9 chrY 1301438 1301876 -50211708 - LTR27 LTR ERV1 0 501 91 444 207 0 0 chrY 1301847 1301929 -50211655 - LTR28 LTR ERV1 -938 82 1 * 25 65 0 0 chrY 1302136 1302182 -50211402 + AT_rich Low_complexity Low_complexity 1 46 0 492 114 81 0 chrY 1302400 1302549 -50211035 + (TA)n Simple_repeat Simple_repeat 1 161 0 230 137 77 18 chrY 1302591 1302759 -50210825 + (TA)n Simple_repeat Simple_repeat 1 178 0 2214 236 69 20 chrY 1302954 1303559 -50210025 - MER99 DNA DNA -2 826 192 39 92 0 0 chrY 1303902 1304011 -50209573 + AT_rich Low_complexity Low_complexity 1 109 0 371 284 63 0 chrY 1304244 1304339 -50209245 - MER99 DNA DNA -727 101 1 374 289 47 23 chrY 1304529 1304657 -50208927 - MIR SINE MIR -10 252 122 660 298 18 11 chrY 1305935 1306217 -50207367 - L1ME3A LINE L1 -219 5951 5668 1690 192 28 43 chrY 1306491 1306921 -50206663 + MLT2D LTR ERVL 10 464 0 1095 296 82 60 chrY 1307029 1307790 -50205794 - L1ME3A LINE L1 -905 5241 4498 1993 95 21 7 chrY 1307790 1308107 -50205477 + AluY SINE Alu 1 311 0 1095 296 82 60 chrY 1308107 1308341 -50205243 - L1ME3A LINE L1 -1648 4498 4271 1749 199 3 0 chrY 1308341 1308643 -50204941 + AluJb SINE Alu 1 303 -9 1095 296 82 60 chrY 1308643 1308687 -50204897 - L1ME3A LINE L1 -1875 4271 4229 2372 86 0 0 chrY 1308687 1308991 -50204593 + AluSq SINE Alu 1 304 -9 1095 296 82 60 chrY 1308991 1309264 -50204320 - L1ME3A LINE L1 -1917 4229 3898 40 72 0 18 chrY 1309277 1309346 -50204238 + AT_rich Low_complexity Low_complexity 1 69 -40 1336 186 93 11 chrY 1309346 1309615 -50203969 + AluJb SINE Alu 1 291 -21 40 72 0 18 chrY 1309615 1309656 -50203928 + AT_rich Low_complexity Low_complexity 69 109 0 674 269 5 46 chrY 1309974 1310190 -50203394 - MLT1E1 LTR MaLR 0 654 448 2296 153 135 41 chrY 1310253 1310770 -50202814 + LTR49 LTR ERV1 1 566 -29 1206 234 116 54 chrY 1310867 1311559 -50202025 - MER61E LTR ERV1 -2 777 1 432 153 266 16 chrY 1311559 1311683 -50201901 - MER4C LTR ERV1 -20 445 291 1429 170 50 50 chrY 1311835 1312177 -50201407 - MER4A LTR ERV1 -322 342 1 2271 175 70 52 chrY 1312340 1312825 -50200759 + LTR26B LTR ERV1 1 494 -37 1897 160 16 0 chrY 1313112 1313419 -50200165 - AluSx SINE Alu 0 312 1 647 118 0 11 chrY 1313521 1313611 -50199973 - LTR35 LTR ERV1 0 618 530 301 192 0 0 chrY 1313611 1313663 -50199921 - MLT2B3 LTR ERVL 0 453 402 249 177 32 0 chrY 1313670 1313732 -50199852 + (TA)n Simple_repeat Simple_repeat 1 64 0 233 269 21 11 chrY 1313732 1313825 -50199759 + L1MC4 LINE L1 6610 6703 -1339 306 303 22 0 chrY 1313844 1313933 -50199651 + L1MC4 LINE L1 6615 6705 -1337 * 309 318 0 0 chrY 1313875 1313963 -50199621 - L1MC4 LINE L1 -1341 6701 6614 304 247 0 62 chrY 1313974 1314071 -50199513 + L1MC4 LINE L1 6613 6703 -1339 487 132 46 7 chrY 1314071 1314223 -50199361 + (TA)n Simple_repeat Simple_repeat 2 159 0 460 139 7 51 chrY 1314225 1314362 -50199222 + (TATAA)n Simple_repeat Simple_repeat 4 134 0 274 112 28 78 chrY 1314367 1314546 -50199038 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 557 84 78 0 chrY 1314541 1314708 -50198876 + (TA)n Simple_repeat Simple_repeat 1 180 0 353 140 28 34 chrY 1314690 1314869 -50198715 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 * 340 136 53 18 chrY 1314849 1315018 -50198566 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 368 123 59 17 chrY 1315021 1315264 -50198320 + (TA)n Simple_repeat Simple_repeat 1 253 0 1982 229 20 34 chrY 1315313 1315841 -50197743 - MLT2B3 LTR ERVL -44 508 1 361 159 16 0 chrY 1315841 1315904 -50197680 - LTR35 LTR ERV1 -84 534 471 370 227 83 41 chrY 1315926 1316098 -50197486 - LTR43 LTR ERV1 -163 516 184 2355 154 127 59 chrY 1316141 1316699 -50196885 - LTR4 LTR ERV1 0 596 1 785 189 123 18 chrY 1316799 1317027 -50196557 - PABL_B LTR ERV1 0 667 416 247 304 54 48 chrY 1317071 1317239 -50196345 - PABL_B LTR ERV1 -498 169 1 257 316 55 70 chrY 1317451 1317637 -50195947 + MIR SINE MIR 18 206 -56 22 35 0 0 chrY 1317803 1317832 -50195752 + AT_rich Low_complexity Low_complexity 1 29 0 599 288 110 21 chrY 1317988 1318224 -50195360 + MIR SINE MIR 3 259 -3 427 308 108 23 chrY 1318665 1318879 -50194705 + MIR SINE MIR 31 262 0 374 320 14 20 chrY 1318905 1319052 -50194532 + MLT1L LTR MaLR 434 579 -36 324 333 8 0 chrY 1319145 1319262 -50194322 - L1MC4a LINE L1 -1922 5886 5769 828 271 20 10 chrY 1319263 1319466 -50194118 - MLT1E1 LTR MaLR 0 654 450 283 259 48 24 chrY 1319578 1319744 -50193840 - L1ME4a LINE L1 -68 6053 5884 1456 186 25 179 chrY 1319849 1320375 -50193209 - MER21A LTR ERV1 -486 445 1 2201 214 65 34 chrY 1320375 1320787 -50192797 - L1MB7 LINE L1 -281 6401 6003 198 71 0 0 chrY 1320787 1320815 -50192769 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2201 214 65 34 chrY 1320815 1321141 -50192443 - L1MB7 LINE L1 -679 6003 5639 2447 60 0 28 chrY 1321141 1321459 -50192125 + AluY SINE Alu 1 309 -2 2201 214 65 34 chrY 1321459 1321637 -50191947 - L1MB7 LINE L1 -1043 5639 5468 2705 266 69 8 chrY 1321643 1322704 -50190880 - L1MB7 LINE L1 -1225 5419 4295 3789 156 65 9 chrY 1322713 1323385 -50190199 - MER50 LTR ERV1 -24 710 1 316 231 154 28 chrY 1323387 1323530 -50190054 - L1MB7 LINE L1 -2355 4289 4129 * 348 287 29 0 chrY 1323526 1323700 -50189884 - L1MB7 LINE L1 -3203 3441 3263 * 2457 253 57 44 chrY 1323697 1324472 -50189112 - L1MB7 LINE L1 -5750 792 8 789 208 13 0 chrY 1324538 1324692 -50188892 - AluSg/x SINE Alu 0 310 155 646 275 66 19 chrY 1324747 1325076 -50188508 - MLT1E1 LTR MaLR -262 392 1 44 20 0 0 chrY 1325101 1325152 -50188432 + AT_rich Low_complexity Low_complexity 1 51 0 245 280 70 0 chrY 1325152 1325252 -50188332 - L1ME LINE L1 -459 5662 5556 667 270 79 21 chrY 1325256 1325604 -50187980 - MSTD LTR MaLR -3 393 4 260 238 25 25 chrY 1325663 1325743 -50187841 - MIR SINE MIR 0 262 183 1887 140 25 69 chrY 1325804 1325857 -50187727 + THE1C LTR MaLR 1 55 -320 2768 136 71 2 chrY 1325857 1326335 -50187249 - MER9 LTR ERVK 0 511 1 1887 140 25 69 chrY 1326335 1326673 -50186911 + THE1C LTR MaLR 55 375 0 2211 98 3 7 chrY 1326982 1327278 -50186306 - AluSp SINE Alu -18 295 1 3177 255 75 105 chrY 1327774 1329447 -50184137 + L1MCa LINE L1 1 1779 -4785 1359 201 21 4 chrY 1329451 1329730 -50183854 + L1MC3 LINE L1 7304 7587 -198 2420 47 7 0 chrY 1329730 1330026 -50183558 - AluY SINE Alu -13 298 1 3160 286 108 38 chrY 1330043 1332209 -50181375 + L1M4b LINE L1 6 2331 -4628 934 136 32 1 chrY 1332226 1332409 -50181175 - MER61E LTR ERV1 -20 774 340 243 212 0 106 chrY 1332521 1332587 -50180997 - MER61E LTR ERV1 -412 157 99 * 258 214 34 90 chrY 1332584 1332673 -50180911 - LTR25 LTR ERV1 -431 363 280 29 28 0 0 chrY 1333104 1333140 -50180444 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chrY 1333176 1333205 -50180379 + AT_rich Low_complexity Low_complexity 1 29 0 2373 249 72 41 chrY 1333209 1334223 -50179361 + L1M4b LINE L1 2623 3604 -3353 2151 131 0 0 chrY 1334223 1334521 -50179063 + AluSg SINE Alu 1 298 -12 2373 249 72 41 chrY 1334521 1334611 -50178973 + L1M4b LINE L1 3604 3690 -3267 1337 146 22 22 chrY 1334611 1334886 -50178698 + L1MA2 LINE L1 6030 6304 0 2373 249 72 41 chrY 1334886 1335268 -50178316 + L1M4b LINE L1 3690 4105 -2852 618 189 0 0 chrY 1335277 1335388 -50178196 + FLAM_C SINE Alu 9 119 -24 189 107 0 0 chrY 1335388 1335416 -50178168 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2226 253 20 68 chrY 1335448 1336376 -50177208 + L1M4b LINE L1 4116 4999 -1958 7176 243 52 5 chrY 1336379 1338066 -50175518 - ERVL LTR ERVL -2149 3615 1851 528 254 18 0 chrY 1338046 1338160 -50175424 - ERVL LTR ERVL -4587 1177 1062 * 76 65 0 0 chrY 1338160 1338299 -50175285 + AT_rich Low_complexity Low_complexity 1 139 0 503 301 11 22 chrY 1338331 1338514 -50175070 - ERVL LTR ERVL -4721 1043 863 1271 229 80 6 chrY 1338536 1338850 -50174734 - MLT2C1 LTR ERVL -56 341 5 2091 211 45 48 chrY 1338855 1339556 -50174028 + L1MB8 LINE L1 5674 6174 -4 296 280 20 0 chrY 1340523 1340623 -50172961 - L1M4 LINE L1 -2218 3928 3827 398 267 5 82 chrY 1340680 1340875 -50172709 - L1MEc LINE L1 -4819 1396 1217 1359 249 76 83 chrY 1340893 1341136 -50172448 + MLT1F1 LTR MaLR 1 244 -323 3691 167 110 17 chrY 1341136 1341892 -50171692 - LTR1B LTR ERV1 0 826 1 1359 249 76 83 chrY 1341892 1342190 -50171394 + MLT1F1 LTR MaLR 244 563 -4 561 261 100 49 chrY 1342213 1342500 -50171084 - L1MEc LINE L1 -4872 1357 1069 1620 213 14 19 chrY 1342500 1342861 -50170723 - MLT1A1 LTR MaLR 0 365 7 924 125 17 10 chrY 1342885 1343183 -50170401 + (TA)n Simple_repeat Simple_repeat 1 300 0 1302 112 6 0 chrY 1343186 1343365 -50170219 - AluSg/x SINE Alu -20 289 110 2327 261 67 18 chrY 1343430 1344284 -50169300 - L1MEc LINE L1 -4968 912 45 21 36 0 0 chrY 1344303 1344331 -50169253 + AT_rich Low_complexity Low_complexity 1 28 0 206 324 127 12 chrY 1344479 1344652 -50168932 - L2 LINE L2 0 3313 3121 629 58 0 0 chrY 1344810 1344896 -50168688 + L1MA1 LINE L1 6213 6298 -4 252 174 0 0 chrY 1344956 1345002 -50168582 - MLT2B2 LTR ERVL -6 509 464 1809 226 116 9 chrY 1345002 1345449 -50168135 - MLT2B2 LTR ERVL -20 495 1 11702 189 9 43 chrY 1345451 1346863 -50166721 - ERVL-B2 LTR ERVL -9 5755 4297 2020 222 21 2 chrY 1346863 1347287 -50166297 - MSTB1 LTR MaLR 0 432 1 11702 189 9 43 chrY 1347287 1348049 -50165535 - ERVL-B2 LTR ERVL -1467 4297 3662 2123 215 24 5 chrY 1348049 1348467 -50165117 - MSTB LTR MaLR 0 426 1 11702 189 9 43 chrY 1348467 1348620 -50164964 - ERVL-B2 LTR ERVL -2102 3662 3505 6312 158 34 3 chrY 1348717 1350124 -50163460 + L1MA1 LINE L1 4832 6302 0 212 316 13 0 chrY 1350817 1350896 -50162688 + MIR SINE MIR 181 260 -2 33 43 0 0 chrY 1351024 1351071 -50162513 + AT_rich Low_complexity Low_complexity 1 47 0 1151 108 11 5 chrY 1351495 1351681 -50161903 - L1MA6 LINE L1 0 6300 6114 31 26 0 0 chrY 1352078 1352116 -50161468 + AT_rich Low_complexity Low_complexity 1 38 0 2921 220 54 18 chrY 1352128 1352868 -50160716 - L1MC3 LINE L1 -1635 6150 5384 185 0 40 0 chrY 1353350 1353375 -50160209 + (TA)n Simple_repeat Simple_repeat 1 26 0 1424 251 123 34 chrY 1353401 1353872 -50159712 + MLT1E LTR MaLR 8 520 -73 355 286 87 43 chrY 1354035 1354220 -50159364 + L2 LINE L2 3093 3285 -28 511 315 76 21 chrY 1354452 1354690 -50158894 + MIR SINE MIR 5 255 -7 318 357 0 9 chrY 1354736 1354848 -50158736 + MIR SINE MIR 2 112 -150 25 75 0 0 chrY 1354884 1354937 -50158647 + AT_rich Low_complexity Low_complexity 1 53 0 6596 84 2 3 chrY 1354962 1356625 -50156959 - L1PA8 LINE L1 -3 6169 4510 251 274 84 11 chrY 1356626 1356721 -50156863 + MIR SINE MIR 159 260 -2 26 30 0 0 chrY 1358708 1358741 -50154843 + AT_rich Low_complexity Low_complexity 1 33 0 318 301 21 21 chrY 1359323 1359416 -50154168 + L2 LINE L2 3102 3194 -78 3612 164 33 45 chrY 1361209 1361447 -50152137 - LTR62 LTR ERVK -4 715 476 2478 53 0 0 chrY 1361447 1361748 -50151836 + AluY SINE Alu 1 301 -10 3612 164 33 45 chrY 1361748 1362227 -50151357 - LTR62 LTR ERVK -243 476 6 31 44 0 0 chrY 1362894 1362939 -50150645 + AT_rich Low_complexity Low_complexity 1 45 0 323 228 43 0 chrY 1363313 1363405 -50150179 - L1ME LINE L1 -354 5808 5713 9966 191 53 2 chrY 1363546 1364662 -50148922 + L1MA1 LINE L1 584 1836 -5729 360 0 0 0 chrY 1364662 1364702 -50148882 + (GA)n Simple_repeat Simple_repeat 1 40 0 9966 191 53 2 chrY 1364702 1365467 -50148117 + L1MA1 LINE L1 1836 2561 -5004 12782 216 22 17 chrY 1365476 1369013 -50144571 + L1PB1 LINE L1 3 3520 -3347 246 32 0 0 chrY 1369013 1369044 -50144540 + (CA)n Simple_repeat Simple_repeat 2 32 0 12782 216 22 17 chrY 1369044 1369658 -50143926 + L1PB1 LINE L1 3520 4129 -2738 1848 164 4 0 chrY 1369658 1369938 -50143646 + AluSx SINE Alu 1 281 -31 350 21 21 0 chrY 1369941 1369988 -50143596 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 12782 216 22 17 chrY 1369988 1370230 -50143354 + L1PB1 LINE L1 4130 4369 -2498 2111 108 0 30 chrY 1370230 1370535 -50143049 + AluSc SINE Alu 6 301 -8 12782 216 22 17 chrY 1370535 1372665 -50140919 + L1PB1 LINE L1 4369 6859 -8 297 0 0 0 chrY 1372674 1372707 -50140877 + (TG)n Simple_repeat Simple_repeat 2 34 0 13100 183 31 17 chrY 1372786 1377797 -50135787 + L1MA1 LINE L1 2513 7721 0 24 32 0 0 chrY 1377797 1377828 -50135756 + AT_rich Low_complexity Low_complexity 1 31 0 1868 131 29 0 chrY 1377918 1378219 -50135365 - AluSx SINE Alu 0 309 1 213 192 96 55 chrY 1378390 1378463 -50135121 + L2 LINE L2 3150 3225 -88 3922 154 52 42 chrY 1379295 1380658 -50132926 + pTR5 LTR ERV1 741 2438 0 273 250 12 24 chrY 1380841 1380924 -50132660 - Charlie4a DNA MER1_type -1 507 426 515 186 0 39 chrY 1380924 1381026 -50132558 + MER4A LTR ERV1 1 98 -566 1479 142 13 120 chrY 1381026 1381413 -50132171 + MER4A LTR ERV1 261 664 0 2486 125 95 43 chrY 1381416 1382031 -50131553 + MER4A-int LTR ERV1 1 812 -5786 1163 266 85 3 chrY 1382133 1382452 -50131132 + MER4A-int LTR ERV1 1860 2204 -4127 5096 146 79 30 chrY 1382472 1383453 -50130131 + MER4A-int LTR ERV1 189 1185 -5573 3679 99 101 18 chrY 1383434 1384110 -50129474 + MER4A-int LTR ERV1 1764 2495 -4103 * 913 175 218 0 chrY 1384110 1384321 -50129263 - LTR8 LTR ERV1 -434 257 1 3374 167 74 25 chrY 1384327 1385207 -50128377 + MER4A-int LTR ERV1 2759 3681 -2917 * 13225 121 53 71 chrY 1385206 1388015 -50125569 + MER4A-int LTR ERV1 3837 6596 -2 602 111 10 20 chrY 1388042 1388141 -50125443 + MER4A LTR ERV1 1 98 -566 1614 144 158 78 chrY 1388141 1388515 -50125069 + MER4A LTR ERV1 261 664 0 921 256 96 23 chrY 1388520 1388914 -50124670 - Charlie4a DNA MER1_type -84 424 2 6070 118 43 12 chrY 1389665 1390684 -50122900 + L1MA2 LINE L1 5254 6304 0 2523 233 18 11 chrY 1392116 1392156 -50121428 - MLT2B3 LTR ERVL 0 554 516 240 35 0 0 chrY 1392156 1392185 -50121399 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2523 233 18 11 chrY 1392185 1392694 -50120890 - MLT2B3 LTR ERVL -38 516 1 5024 171 10 7 chrY 1393496 1393898 -50119686 + L1PA15 LINE L1 5090 5489 -676 189 74 0 0 chrY 1393898 1393925 -50119659 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 5024 171 10 7 chrY 1393925 1394596 -50118988 + L1PA15 LINE L1 5489 6163 -2 2678 223 26 23 chrY 1394703 1395349 -50118235 + MER82 DNA MER2_type 2 649 -4 180 176 0 0 chrY 1395423 1395457 -50118127 + GA-rich Low_complexity Low_complexity 1 34 0 633 161 0 18 chrY 1395576 1395688 -50117896 - FLAM_C SINE Alu -12 131 22 37 23 0 0 chrY 1396274 1396318 -50117266 + AT_rich Low_complexity Low_complexity 1 44 0 228 214 0 57 chrY 1396318 1396388 -50117196 + L1M4 LINE L1 4749 4814 -1332 23 86 0 0 chrY 1396513 1396571 -50117013 + AT_rich Low_complexity Low_complexity 1 58 0 374 316 43 0 chrY 1397209 1397326 -50116258 + MIR SINE MIR 40 161 -101 679 235 31 133 chrY 1397335 1397718 -50115866 + MLT1B LTR MaLR 18 386 -4 256 327 50 0 chrY 1397720 1397821 -50115763 + MIR SINE MIR 154 259 -3 327 347 45 23 chrY 1397928 1398104 -50115480 + MIR SINE MIR 1 180 -82 2160 52 7 17 chrY 1398172 1398510 -50115074 + AluY SINE Alu 1 335 0 848 320 68 10 chrY 1398596 1399084 -50114500 + Charlie7 DNA MER1_type 43 558 -2054 7849 158 18 41 chrY 1399130 1400623 -50112961 - Tigger1 DNA MER2_type -1 2417 959 3931 180 10 1 chrY 1400640 1401311 -50112273 - Tigger1 DNA MER2_type -1741 677 1 189 147 0 0 chrY 1401497 1401531 -50112053 + (TA)n Simple_repeat Simple_repeat 1 34 0 432 237 54 0 chrY 1401756 1401849 -50111735 + L1MC1 LINE L1 19 116 -6310 * 7101 238 44 44 chrY 1401825 1402706 -50110878 + L1MC1 LINE L1 2853 3733 -2880 2220 97 10 3 chrY 1402706 1403014 -50110570 + AluSx SINE Alu 1 310 -2 7101 238 44 44 chrY 1403014 1404077 -50109507 + L1MC1 LINE L1 3733 4795 -1818 1543 198 52 25 chrY 1404077 1404259 -50109325 + THE1C LTR MaLR 1 177 -198 234 62 0 0 chrY 1404259 1404291 -50109293 + (CA)n Simple_repeat Simple_repeat 2 33 0 1543 198 52 25 chrY 1404291 1404472 -50109112 + THE1C LTR MaLR 177 374 -1 7101 238 44 44 chrY 1404472 1406276 -50107308 + L1MC1 LINE L1 4795 6596 -17 13353 212 36 13 chrY 1406383 1406736 -50106848 + L1PB1 LINE L1 1326 1669 -5198 207 0 0 0 chrY 1406736 1406759 -50106825 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 13353 212 36 13 chrY 1406759 1407187 -50106397 + L1PB1 LINE L1 1669 2086 -4781 274 81 0 0 chrY 1407187 1407224 -50106360 - MADE1 DNA Mariner -41 39 3 13353 212 36 13 chrY 1407224 1409340 -50104244 + L1PB1 LINE L1 2086 4151 -2716 267 54 0 0 chrY 1409340 1409377 -50104207 + (CAA)n Simple_repeat Simple_repeat 2 38 0 13353 212 36 13 chrY 1409377 1411208 -50102376 + L1PB1 LINE L1 4151 6291 -576 4501 107 140 26 chrY 1411208 1411949 -50101635 - LTR12 LTR ERV1 0 826 1 13353 212 36 13 chrY 1411949 1412122 -50101462 + L1PB1 LINE L1 6291 6458 -409 360 111 0 0 chrY 1412124 1412178 -50101406 + (TA)n Simple_repeat Simple_repeat 2 55 0 2207 144 14 0 chrY 1412178 1412538 -50101046 + L1PB1 LINE L1 6502 6866 -1 1933 95 0 4 chrY 1412725 1412978 -50100606 - AluY SINE Alu -16 295 44 25 31 0 0 chrY 1413148 1413180 -50100404 + AT_rich Low_complexity Low_complexity 1 32 0 733 248 0 43 chrY 1413351 1413561 -50100023 - L1PA16 LINE L1 -5 6161 5961 1603 192 13 6 chrY 1413561 1413874 -50099710 - L1PA15 LINE L1 0 6816 6502 1012 225 120 0 chrY 1413908 1414184 -50099400 - L1PA15 LINE L1 -1415 5382 5074 1957 190 80 3 chrY 1414193 1414582 -50099002 + MSTA LTR MaLR 10 428 0 7358 230 15 9 chrY 1414582 1416219 -50097365 + MSTA-int LTR MaLR 1 1648 -3 1964 200 56 12 chrY 1416222 1416632 -50096952 + MSTA LTR MaLR 1 428 0 10821 224 25 31 chrY 1416632 1420275 -50093309 - L1PA15 LINE L1 -1720 5077 1459 1307 257 51 60 chrY 1420817 1421284 -50092300 + L1MCa LINE L1 47 509 -5917 995 149 13 53 chrY 1421287 1421488 -50092096 + THE1B LTR MaLR 193 364 0 9194 145 13 35 chrY 1421491 1423068 -50090516 + THE1C-int LTR MaLR 4 1544 -36 2643 211 58 26 chrY 1423068 1423106 -50090478 + LTR39 LTR ERV1 115 150 -633 1460 186 72 31 chrY 1423106 1423466 -50090118 + THE1C LTR MaLR 1 375 0 2643 211 58 26 chrY 1423466 1424047 -50089537 + LTR39 LTR ERV1 150 754 -29 3786 186 19 8 chrY 1424054 1424758 -50088826 - MER50 LTR ERV1 -23 711 1 2057 120 13 13 chrY 1424758 1425075 -50088509 - MER50-int LTR ERV1 -8 7197 6881 * 19817 152 29 29 chrY 1425072 1425449 -50088135 - MER50-int LTR ERV1 -1177 6028 5652 189 265 61 0 chrY 1425449 1425498 -50088086 + MIR SINE MIR 69 120 -88 19817 152 29 29 chrY 1425498 1429698 -50083886 - MER50-int LTR ERV1 -1553 5652 446 13193 145 10 2 chrY 1429698 1431898 -50081686 + L1PA10 LINE L1 3082 5299 -847 1418 163 11 65 chrY 1431911 1432187 -50081397 + AluSx SINE Alu 38 298 -14 5690 102 8 19 chrY 1432188 1433029 -50080555 + L1PA10 LINE L1 5320 6151 -17 857 97 15 30 chrY 1433029 1433163 -50080421 - MER50-int LTR ERV1 -6311 894 763 290 105 0 0 chrY 1433177 1433215 -50080369 + MER50-int LTR ERV1 757 794 -6411 * 4840 147 8 4 chrY 1433214 1433969 -50079615 - MER50-int LTR ERV1 -6447 758 1 3543 153 45 53 chrY 1433969 1434239 -50079345 - MER50 LTR ERV1 0 734 463 2344 82 7 0 chrY 1434239 1434544 -50079040 - AluSc SINE Alu -2 307 1 3543 153 45 53 chrY 1434544 1435013 -50078571 - MER50 LTR ERV1 -271 463 1 23 54 0 0 chrY 1435126 1435163 -50078421 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrY 1436016 1436045 -50077539 + AT_rich Low_complexity Low_complexity 1 29 0 1992 205 123 91 chrY 1436341 1437092 -50076492 + LTR48 LTR ERV1 13 787 0 24 67 0 0 chrY 1438318 1438363 -50075221 + AT_rich Low_complexity Low_complexity 1 45 0 1982 86 82 4 chrY 1438575 1438854 -50074730 - AluSq SINE Alu -12 301 1 858 246 20 106 chrY 1439815 1440210 -50073374 + MLT1A1 LTR MaLR 5 365 0 30 0 0 0 chrY 1441140 1441170 -50072414 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrY 1441917 1441953 -50071631 + AT_rich Low_complexity Low_complexity 1 36 0 187 283 0 19 chrY 1442891 1442944 -50070640 + MIR SINE MIR 161 212 -50 280 275 68 2 chrY 1443463 1443566 -50070018 - MIR SINE MIR -65 143 36 3372 172 47 37 chrY 1443659 1443709 -50069875 - L1MC2 LINE L1 -10 6614 6566 2250 69 0 33 chrY 1443709 1444013 -50069571 + AluY SINE Alu 1 294 -17 3372 172 47 37 chrY 1444013 1444711 -50068873 - L1MC2 LINE L1 -58 6566 5859 * 6973 208 12 6 chrY 1444695 1447196 -50066388 + L1PA16 LINE L1 3658 6166 0 2604 246 76 14 chrY 1447196 1448508 -50065076 - L1MC2 LINE L1 -750 5676 4477 1824 248 27 8 chrY 1448501 1449311 -50064273 - L1MC2 LINE L1 -3353 3073 2247 * 318 271 82 29 chrY 1449348 1449518 -50064066 + L1MCa LINE L1 2051 2229 -4197 369 243 19 0 chrY 1449691 1449794 -50063790 - L1MA10 LINE L1 -2 6332 6228 399 322 29 21 chrY 1449802 1450108 -50063476 - L1M4 LINE L1 -2324 3822 3519 21 36 0 0 chrY 1450646 1450674 -50062910 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrY 1451125 1451157 -50062427 + AT_rich Low_complexity Low_complexity 1 32 0 9202 240 81 21 chrY 1451157 1455329 -50058255 - L1PA16 LINE L1 -22 6144 1706 599 173 10 0 chrY 1455349 1455453 -50058131 - U6 snRNA snRNA -2 105 1 244 323 71 32 chrY 1455712 1455867 -50057717 - MIR SINE MIR -10 252 92 22 0 0 0 chrY 1456369 1456391 -50057193 + AT_rich Low_complexity Low_complexity 1 22 0 738 295 91 21 chrY 1457148 1457389 -50056195 - MIR SINE MIR 0 262 5 21 0 0 0 chrY 1458353 1458374 -50055210 + AT_rich Low_complexity Low_complexity 1 21 0 474 260 48 57 chrY 1458555 1458782 -50054802 + HAL1 LINE L1 2283 2507 0 16497 170 19 17 chrY 1458805 1461778 -50051806 + L1PA15-16 LINE L1 1 2979 -3870 2201 106 0 3 chrY 1461927 1462220 -50051364 - AluY SINE Alu -19 292 1 28 0 0 0 chrY 1462231 1462259 -50051325 + AT_rich Low_complexity Low_complexity 1 28 0 334 133 94 39 chrY 1462268 1462396 -50051188 + (TATAA)n Simple_repeat Simple_repeat 1 135 0 402 329 58 13 chrY 1462839 1462994 -50050590 - L2 LINE L2 -2074 1240 1079 2219 92 20 32 chrY 1463589 1463936 -50049648 - L1PA12 LINE L1 -2 6166 5824 253 349 94 9 chrY 1464007 1464113 -50049471 - L2 LINE L2 -5 3308 3194 329 365 37 45 chrY 1464310 1464554 -50049030 - MIR SINE MIR -19 243 2 483 214 10 10 chrY 1464582 1464680 -50048904 - Tigger7 DNA MER2_type 0 2487 2390 1094 235 49 4 chrY 1464680 1464927 -50048657 - Tigger7 DNA MER2_type -2223 264 7 201 342 22 82 chrY 1465864 1466048 -50047536 + L2 LINE L2 2911 3083 -189 207 333 67 44 chrY 1466165 1466255 -50047329 + L2 LINE L2 3173 3264 -8 1670 48 0 0 chrY 1467445 1467653 -50045931 - L1PA4 LINE L1 -8 6147 5940 2141 143 75 36 chrY 1469162 1469574 -50044010 - MSTA LTR MaLR 0 428 1 24 53 0 0 chrY 1469664 1469702 -50043882 + AT_rich Low_complexity Low_complexity 1 38 0 2209 96 0 0 chrY 1470287 1470607 -50042977 - AluSc SINE Alu 0 320 1 25 0 0 0 chrY 1470872 1470897 -50042687 + AT_rich Low_complexity Low_complexity 1 25 0 440 254 103 87 chrY 1471021 1471206 -50042378 - MIR SINE MIR -25 237 50 280 318 29 64 chrY 1471273 1471446 -50042138 + MER5B DNA MER1_type 2 168 -10 9036 184 105 19 chrY 1472032 1472966 -50040618 - L1MA3 LINE L1 -215 7509 6657 198 0 0 0 chrY 1472966 1472988 -50040596 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 9036 184 105 19 chrY 1472988 1475242 -50038342 - L1MA3 LINE L1 -1067 6657 4027 1686 212 3 3 chrY 1475240 1475551 -50038033 - L1MA3 LINE L1 -6840 725 415 * 3078 169 49 34 chrY 1475551 1476368 -50037216 - pTR5 LTR ERV1 -437 2001 5 320 246 45 18 chrY 1476940 1477050 -50036534 - L1MA9 LINE L1 -173 6139 6027 6811 248 43 36 chrY 1477720 1479404 -50034180 + L1M3 LINE L1 2466 4137 -2009 2142 125 6 10 chrY 1479404 1479717 -50033867 + AluSx SINE Alu 1 312 0 6811 248 43 36 chrY 1479717 1479830 -50033754 + L1M3 LINE L1 4137 4248 -1898 2426 83 0 0 chrY 1479830 1480142 -50033442 - AluSq SINE Alu -1 312 1 6811 248 43 36 chrY 1480142 1480371 -50033213 + L1M3 LINE L1 4248 4474 -1672 1503 220 31 11 chrY 1480371 1480725 -50032859 + MLT1A1 LTR MaLR 5 365 0 6811 248 43 36 chrY 1480725 1481452 -50032132 + L1M3 LINE L1 4474 5297 -849 2188 150 29 3 chrY 1481465 1481839 -50031745 + L1M3 LINE L1 5401 5784 -399 1595 239 20 0 chrY 1481841 1482197 -50031387 - MLT1A1 LTR MaLR -2 363 1 4471 241 47 51 chrY 1482197 1483481 -50030103 - MLT1A1-int LTR MaLR 0 1735 458 2621 204 24 9 chrY 1483464 1484042 -50029542 + L1MA7 LINE L1 5350 5936 -355 * 252 0 0 0 chrY 1484313 1484341 -50029243 + (CA)n Simple_repeat Simple_repeat 2 29 0 273 29 0 0 chrY 1484342 1484376 -50029208 + (GA)n Simple_repeat Simple_repeat 1 34 0 811 311 72 43 chrY 1484783 1485253 -50028331 - MLT1H LTR MaLR -1 548 65 1344 204 139 79 chrY 1485443 1485962 -50027622 + MLT2B3 LTR ERVL 1 550 -4 230 291 0 0 chrY 1485966 1486021 -50027563 + Tigger5 DNA MER2_type 1 55 -2268 * 514 209 38 0 chrY 1486013 1486118 -50027466 + Tigger5 DNA MER2_type 2215 2323 0 727 341 35 29 chrY 1486499 1486950 -50026634 + L1PA16 LINE L1 789 1242 -6332 1725 150 7 0 chrY 1487273 1487546 -50026038 + AluSx SINE Alu 3 277 -35 868 295 59 33 chrY 1487863 1488165 -50025419 + L1PA16 LINE L1 2183 2476 -5098 297 0 0 0 chrY 1488165 1488198 -50025386 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 868 295 59 33 chrY 1488198 1488298 -50025286 + L1PA16 LINE L1 2476 2589 -4985 2415 76 3 0 chrY 1488298 1488599 -50024985 + AluY SINE Alu 1 302 -9 868 295 59 33 chrY 1488599 1488651 -50024933 + L1PA16 LINE L1 2589 2638 -4936 2844 104 35 14 chrY 1488652 1489043 -50024541 + MLT2A1 LTR ERVL 1 403 -41 243 61 0 0 chrY 1489043 1489076 -50024508 + (TA)n Simple_repeat Simple_repeat 1 33 0 2844 104 35 14 chrY 1489076 1489116 -50024468 + MLT2A1 LTR ERVL 403 441 -3 40674 91 15 8 chrY 1489120 1493777 -50019807 + HERVL-A1 LTR ERVL 1 4732 -922 194 88 0 29 chrY 1493777 1493811 -50019773 + L2 LINE L2 1661 1693 -1621 40674 91 15 8 chrY 1493811 1494664 -50018920 + HERVL-A1 LTR ERVL 4732 5578 -76 2818 111 0 5 chrY 1494701 1495107 -50018477 + MLT2A1 LTR ERVL 1 404 -40 278 137 20 20 chrY 1495111 1495213 -50018371 + (TA)n Simple_repeat Simple_repeat 1 102 0 290 139 74 8 chrY 1495246 1495314 -50018270 + MLT2A2 LTR ERVL 400 453 0 12610 238 22 11 chrY 1495345 1500208 -50013376 + L1PA16 LINE L1 2676 7598 -6 184 0 0 88 chrY 1500442 1500476 -50013108 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 444 279 31 8 chrY 1500493 1500622 -50012962 + MIR SINE MIR 61 192 -70 23 0 0 0 chrY 1500754 1500777 -50012807 + AT_rich Low_complexity Low_complexity 1 23 0 262 258 31 12 chrY 1501450 1501613 -50011971 + (TA)n Simple_repeat Simple_repeat 2 167 0 9353 26 1 3 chrY 1501639 1503522 -50010062 - L1PA3 LINE L1 -3 6152 4271 280 249 45 124 chrY 1504872 1505049 -50008535 + MER103 DNA DNA 1 163 -3 21 36 0 0 chrY 1505277 1505305 -50008279 + AT_rich Low_complexity Low_complexity 1 28 0 191 267 22 67 chrY 1506502 1506592 -50006992 - MIR3 SINE MIR -13 195 110 202 244 0 0 chrY 1507415 1507460 -50006124 + (TA)n Simple_repeat Simple_repeat 1 45 0 1823 209 66 18 chrY 1508705 1509145 -50004439 + LOR1b LTR ERV1 1 461 0 656 142 55 31 chrY 1509148 1509275 -50004309 + LOR1b-int LTR ERV1 266 395 -7725 3301 153 83 15 chrY 1509276 1509890 -50003694 + LOR1-int LTR ERV1 203 858 -7262 881 158 35 0 chrY 1509882 1510053 -50003531 + LOR1-int LTR ERV1 2075 2251 -5869 * 2938 52 6 0 chrY 1510055 1510420 -50003164 - L1PA7 LINE L1 -4 6150 5784 12568 98 6 7 chrY 1510439 1512274 -50001310 + L1P LINE L1 1783 3615 -2531 1302 247 136 42 chrY 1512277 1513066 -50000518 - LTR28 LTR ERV1 -27 993 1 8436 125 30 33 chrY 1513066 1514540 -49999044 + LOR1b-int LTR ERV1 2363 3833 -4287 9631 139 31 32 chrY 1514580 1516367 -49997217 + LOR1b-int LTR ERV1 3743 5528 -2592 1596 161 20 0 chrY 1516353 1516608 -49996976 + LOR1b-int LTR ERV1 5801 6060 -2060 * 578 135 0 0 chrY 1516610 1516699 -49996885 + LOR1b-int LTR ERV1 8030 8118 -2 2028 189 90 2 chrY 1516710 1517134 -49996450 + LOR1b LTR ERV1 1 461 0 11934 243 52 24 chrY 1517378 1523766 -49989818 - L1MA5 LINE L1 -6 7356 1 712 235 45 30 chrY 1524847 1525047 -49988537 - MER3 DNA MER1_type -5 204 2 265 309 41 0 chrY 1525133 1525230 -49988354 - Charlie7 DNA MER1_type -2511 101 1 21 36 0 0 chrY 1525437 1525465 -49988119 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrY 1525833 1525855 -49987729 + AT_rich Low_complexity Low_complexity 1 22 0 375 41 0 0 chrY 1526763 1526812 -49986772 + (GA)n Simple_repeat Simple_repeat 2 50 0 1734 139 88 0 chrY 1527007 1527280 -49986304 - AluSx SINE Alu -15 297 1 10674 203 52 105 chrY 1527357 1530093 -49983491 + L1P3 LINE L1 4 2858 -3603 1864 150 64 9 chrY 1530093 1530420 -49983164 + THE1B LTR MaLR 1 345 -19 10674 203 52 105 chrY 1530420 1531639 -49981945 + L1P3 LINE L1 2858 4141 -2320 425 250 56 0 chrY 1531627 1531735 -49981849 + L1MC4a LINE L1 6725 6838 -970 * 24 32 0 0 chrY 1531738 1531769 -49981815 + AT_rich Low_complexity Low_complexity 1 31 0 654 294 86 46 chrY 1531885 1532517 -49981067 + L1M4 LINE L1 3106 3822 -2324 387 0 0 0 chrY 1532517 1532560 -49981024 + (CA)n Simple_repeat Simple_repeat 2 44 0 654 294 86 46 chrY 1532560 1533006 -49980578 + L1M4 LINE L1 3822 4249 -1897 1434 192 137 57 chrY 1533118 1533519 -49980065 - MLT2B1 LTR ERVL -87 433 1 366 247 58 31 chrY 1533643 1533866 -49979718 + L1M4 LINE L1 4370 4598 -1548 384 296 107 9 chrY 1533916 1534233 -49979351 + L1M4 LINE L1 4711 5058 -1088 430 284 57 5 chrY 1534237 1534431 -49979153 + L1M4 LINE L1 4904 5107 -1039 * 1784 282 73 25 chrY 1534417 1535360 -49978224 + L1MC4a LINE L1 2235 3132 -3014 1605 176 0 41 chrY 1535360 1535650 -49977934 + AluJo SINE Alu 1 278 -34 396 0 0 0 chrY 1535650 1535694 -49977890 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1784 282 73 25 chrY 1535694 1535739 -49977845 + L1MC4a LINE L1 3131 3271 -2875 1634 107 0 0 chrY 1535750 1535965 -49977619 + AluSq SINE Alu 5 219 -94 467 153 119 0 chrY 1535991 1536154 -49977430 + AluSg/x SINE Alu 176 352 0 893 122 0 7 chrY 1536160 1536308 -49977276 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 1199 271 10 43 chrY 1536331 1536837 -49976747 + L1MC4a LINE L1 3289 3777 -2369 1247 258 54 16 chrY 1536851 1537239 -49976345 + L1MD2 LINE L1 5947 6349 -10 4968 246 58 47 chrY 1537240 1539191 -49974393 + L1MC4a LINE L1 5837 7808 0 451 315 65 6 chrY 1539196 1539623 -49973961 + L1MC4a LINE L1 5189 5639 -525 2067 93 40 0 chrY 1539758 1540036 -49973548 + AluY SINE Alu 1 289 -22 24 0 0 0 chrY 1540039 1540063 -49973521 + AT_rich Low_complexity Low_complexity 1 24 0 298 197 115 41 chrY 1540254 1540376 -49973208 + L1ME4a LINE L1 5991 6121 0 442 263 23 8 chrY 1541179 1541312 -49972272 + L1ME3A LINE L1 5994 6128 -42 351 312 37 28 chrY 1541313 1541528 -49972056 + L1MC4a LINE L1 5814 6030 -1778 189 107 0 0 chrY 1541735 1541763 -49971821 + (TTCTCC)n Simple_repeat Simple_repeat 5 32 0 26 30 0 0 chrY 1543318 1543351 -49970233 + AT_rich Low_complexity Low_complexity 1 33 0 1346 168 4 58 chrY 1543530 1543804 -49969780 + AluJb SINE Alu 33 291 -21 493 276 74 12 chrY 1544226 1544389 -49969195 + MER45A DNA AcHobo 3 175 -3 23 0 0 0 chrY 1545341 1545364 -49968220 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chrY 1545832 1545858 -49967726 + AT_rich Low_complexity Low_complexity 1 26 0 2394 59 0 13 chrY 1546521 1546824 -49966760 + AluY SINE Alu 1 299 -12 320 301 32 26 chrY 1547256 1547412 -49966172 - L1M4 LINE L1 -3793 2353 2197 3877 213 52 20 chrY 1547564 1548674 -49964910 - L1MA9 LINE L1 -30 6282 5137 5935 220 30 37 chrY 1548680 1548963 -49964621 + L1 LINE L1 3414 3697 -2449 360 0 0 0 chrY 1548963 1549003 -49964581 + (CA)n Simple_repeat Simple_repeat 2 41 0 5935 220 30 37 chrY 1549003 1549949 -49963635 + L1 LINE L1 3697 4648 -1498 2507 146 21 14 chrY 1549949 1550374 -49963210 - MSTA LTR MaLR 0 428 1 7794 207 34 8 chrY 1550375 1551982 -49961602 - MSTA-int LTR MaLR -1 1650 2 2403 156 24 14 chrY 1551984 1552407 -49961177 - MSTA LTR MaLR -1 427 1 5935 220 30 37 chrY 1552407 1552901 -49960683 + L1 LINE L1 4649 5131 -1015 416 324 7 7 chrY 1552971 1553113 -49960471 + MIR SINE MIR 95 236 -26 1470 154 110 65 chrY 1553228 1553657 -49959927 + LTR7 LTR ERV1 1 448 -2 4276 120 3 0 chrY 1553886 1554519 -49959065 + L1PA15 LINE L1 5313 5947 -218 2734 66 54 84 chrY 1554519 1555020 -49958564 + LTR21A LTR ERV1 1 486 -19 1244 105 6 0 chrY 1555024 1555195 -49958389 + L1PA15 LINE L1 5948 6119 -46 308 349 28 0 chrY 1555539 1555648 -49957936 + Charlie1 DNA MER1_type 7 118 -2643 3187 188 8 8 chrY 1555664 1556587 -49956997 - L1PA12 LINE L1 -4103 3481 2552 399 103 0 0 chrY 1556593 1556661 -49956923 - MLT2A2 LTR ERVL 0 453 386 37828 97 5 6 chrY 1556661 1561792 -49951792 - HERVL-A2 LTR ERVL -529 5125 1 3154 112 16 0 chrY 1561792 1562238 -49951346 - MLT2A2 LTR ERVL 0 453 1 9292 221 12 12 chrY 1562249 1562793 -49950791 + L1PA15-16 LINE L1 2762 3305 -3544 2126 192 63 58 chrY 1562793 1563344 -49950240 - MLT2B3 LTR ERVL 0 554 1 9292 221 12 12 chrY 1563344 1565024 -49948560 + L1PA15-16 LINE L1 3305 4985 -1864 249 264 0 0 chrY 1566194 1566247 -49947337 - L2 LINE L2 -2323 991 939 4555 303 63 29 chrY 1566344 1567173 -49946411 - L2 LINE L2 -669 2645 1845 2233 154 39 20 chrY 1567173 1567613 -49945971 + LTR7 LTR ERV1 3 450 0 4555 303 63 29 chrY 1567613 1568546 -49945038 - L2 LINE L2 -1469 1845 945 1324 157 80 110 chrY 1568546 1569010 -49944574 + LTR7 LTR ERV1 1 450 0 4555 303 63 29 chrY 1569010 1569049 -49944535 - L2 LINE L2 -2369 945 909 1898 140 51 40 chrY 1569049 1569420 -49944164 - THE1C LTR MaLR 0 375 1 4555 303 63 29 chrY 1569420 1569511 -49944073 - L2 LINE L2 -2405 909 687 1208 231 51 20 chrY 1569766 1570061 -49943523 + MLT1C LTR MaLR 1 304 -163 3518 231 26 22 chrY 1570063 1571058 -49942526 - L1P LINE L1 -2192 3954 2956 1877 199 94 35 chrY 1571060 1571573 -49942011 - L1PA16 LINE L1 0 6166 5624 476 215 65 0 chrY 1572311 1572404 -49941180 + Tigger3b DNA MER2_type 1 99 -1132 4499 182 28 10 chrY 1572408 1573316 -49940268 + Tigger3b DNA MER2_type 277 1200 -31 11424 157 17 38 chrY 1573351 1574821 -49938763 + Tigger1 DNA MER2_type 1 1500 -918 877 209 0 0 chrY 1574821 1574979 -49938605 + FRAM SINE Alu 3 160 -6 11424 157 17 38 chrY 1574979 1575334 -49938250 + Tigger1 DNA MER2_type 1500 1861 -557 423 0 0 0 chrY 1575334 1575381 -49938203 + (TCTCCC)n Simple_repeat Simple_repeat 1 47 0 9646 82 47 2 chrY 1575381 1576645 -49936939 + SVA Other Other 50 1369 -17 208 51 26 26 chrY 1576651 1576690 -49936894 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 11424 157 17 38 chrY 1576690 1576990 -49936594 + Tigger1 DNA MER2_type 1865 2091 -327 8586 190 18 8 chrY 1577009 1578632 -49934952 + L1PBa LINE L1 1 1639 -5224 7053 159 53 16 chrY 1578628 1579708 -49933876 + L1PB2 LINE L1 50 1088 -5115 * 2160 94 0 20 chrY 1579708 1580006 -49933578 + AluSg SINE Alu 17 308 -2 7053 159 53 16 chrY 1580006 1581279 -49932305 + L1PB2 LINE L1 1088 2483 -3720 2907 227 13 21 chrY 1581260 1582027 -49931557 + L1PB2 LINE L1 3806 4566 -1637 * 4228 138 22 14 chrY 1582034 1582765 -49930819 + L1PB2 LINE L1 5469 6205 -3 1809 164 6 9 chrY 1582777 1583094 -49930490 + Tigger1 DNA MER2_type 2078 2393 -25 234 341 100 18 chrY 1583384 1583554 -49930030 - MIR SINE MIR -10 252 69 185 179 0 18 chrY 1583830 1583886 -49929698 + T-rich Low_complexity Low_complexity 4 58 0 261 344 80 31 chrY 1584220 1584383 -49929201 + L3b LINE CR1 1303 1473 -110 204 196 0 39 chrY 1584733 1584784 -49928800 + CT-rich Low_complexity Low_complexity 3 51 0 1751 190 128 8 chrY 1585176 1585644 -49927940 - MER69 DNA AcHobo -4 2522 1999 689 274 6 6 chrY 1585630 1585798 -49927786 - MER69 DNA AcHobo -1958 568 401 * 21 0 0 0 chrY 1586568 1586589 -49926995 + AT_rich Low_complexity Low_complexity 1 21 0 2121 108 26 10 chrY 1587285 1587592 -49925992 - AluSx SINE Alu 0 312 1 7995 223 57 8 chrY 1588360 1589459 -49924125 + L1MB1 LINE L1 3065 4109 -2059 324 0 0 0 chrY 1589459 1589495 -49924089 + (CA)n Simple_repeat Simple_repeat 2 37 0 7995 223 57 8 chrY 1589495 1591347 -49922237 + L1MB1 LINE L1 4109 6168 0 562 264 214 0 chrY 1591572 1591731 -49921853 - MIR SINE MIR -69 193 1 438 285 65 0 chrY 1591999 1592122 -49921462 + MIR SINE MIR 117 247 -15 186 341 24 12 chrY 1592190 1592275 -49921309 - L3b LINE CR1 -146 1437 1352 6911 52 17 1 chrY 1593250 1594237 -49919347 + L1PA6 LINE L1 5154 6154 0 343 244 12 12 chrY 1595700 1595786 -49917798 + MER54A LTR ERVL 1 86 -815 * 2176 175 27 3 chrY 1595770 1596142 -49917442 + MER54A LTR ERVL 520 900 -1 4452 111 69 8 chrY 1596726 1597394 -49916190 + THE1B-int LTR MaLR 872 1580 0 2474 121 6 3 chrY 1597394 1597757 -49915827 + THE1B LTR MaLR 1 364 0 198 336 24 11 chrY 1597763 1597851 -49915733 - MIR3 SINE MIR -48 160 71 229 127 84 28 chrY 1598046 1598117 -49915467 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 1540 263 185 4 chrY 1598122 1598635 -49914949 - MLT2F LTR ERVL -57 606 1 315 319 70 32 chrY 1598638 1598795 -49914789 + MIR SINE MIR 72 234 -28 22286 183 23 17 chrY 1599354 1605721 -49907863 + L1PA10 LINE L1 1 6479 -4 21 36 0 0 chrY 1606105 1606133 -49907451 + AT_rich Low_complexity Low_complexity 1 28 0 561 256 28 6 chrY 1606365 1606541 -49907043 - MER104 DNA MER2_type 0 180 1 2058 86 17 7 chrY 1607567 1607857 -49905727 - AluSx SINE Alu -19 293 1 350 314 59 0 chrY 1609050 1609219 -49904365 + HAL1 LINE L1 1087 1265 -1242 33 25 0 0 chrY 1609312 1609352 -49904232 + AT_rich Low_complexity Low_complexity 1 40 0 672 236 78 5 chrY 1609352 1609543 -49904041 - L1PA16 LINE L1 -2 6164 5960 * 4968 193 15 7 chrY 1609534 1610745 -49902839 - L1PBa LINE L1 -2843 4019 2799 4201 95 34 0 chrY 1610757 1611376 -49902208 - L1PBa LINE L1 -4122 2741 2102 9158 238 16 17 chrY 1611390 1614870 -49898714 + L1PA16 LINE L1 2516 5988 -178 686 220 52 0 chrY 1615051 1615224 -49898360 + L1PA16 LINE L1 5985 6166 0 1498 122 0 0 chrY 1615312 1615526 -49898058 + AluSg/x SINE Alu 95 308 -2 1633 233 19 74 chrY 1615528 1616266 -49897318 + L1MC1 LINE L1 2350 3044 -3382 5560 220 39 10 chrY 1616302 1618893 -49894691 + L1MC1 LINE L1 3931 6595 -18 191 309 94 74 chrY 1619121 1619578 -49894006 - L2 LINE L2 -1300 2014 1549 350 0 0 0 chrY 1620253 1620299 -49893285 + AluY SINE Alu 256 301 0 749 247 90 0 chrY 1621164 1621342 -49892242 - MER58A DNA MER1_type -30 194 1 243 277 196 16 chrY 1621955 1622139 -49891445 + L1ME LINE L1 5569 5785 -336 266 305 119 0 chrY 1622725 1622843 -49890741 - MLT1L LTR MaLR -2 613 482 388 294 24 8 chrY 1622927 1623053 -49890531 - MLT1L LTR MaLR -375 240 113 313 209 64 122 chrY 1623985 1624157 -49889427 - HAL1b LINE L1 0 1348 1187 268 301 13 78 chrY 1624574 1624727 -49888857 - MER5B DNA MER1_type -34 144 2 25 31 0 0 chrY 1625068 1625100 -49888484 + AT_rich Low_complexity Low_complexity 1 32 0 267 54 0 0 chrY 1626182 1626219 -49887365 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 131 16 11 chrY 1626495 1626868 -49886716 - THE1C LTR MaLR 0 375 1 6917 151 14 9 chrY 1626868 1627981 -49885603 - THE1C-int LTR MaLR 0 1580 463 739 219 52 41 chrY 1627981 1628251 -49885333 + pTR5 LTR ERV1 756 1028 -1410 1734 102 198 220 chrY 1628343 1628949 -49884635 + pTR5 LTR ERV1 31 558 -156 2544 136 101 5 chrY 1628951 1629386 -49884198 - THE1C-int LTR MaLR -1103 477 1 2462 112 48 0 chrY 1629386 1629744 -49883840 - THE1C LTR MaLR 0 375 1 230 351 18 9 chrY 1629744 1629855 -49883729 - L2 LINE L2 -1328 1986 1875 1174 157 0 5 chrY 1630188 1630398 -49883186 + L1MA1 LINE L1 6094 6302 0 198 71 0 0 chrY 1630404 1630432 -49883152 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4339 53 3 2 chrY 1630443 1631025 -49882559 + L1PA5 LINE L1 2954 3536 -2610 14170 49 11 3 chrY 1631027 1633569 -49880015 + L1PA5 LINE L1 3608 6154 0 264 137 0 0 chrY 1635025 1635076 -49878508 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 1255 172 159 7 chrY 1635418 1635720 -49877864 + MER58D DNA MER1_type 3 350 -36 3358 64 2 9 chrY 1635755 1636206 -49877378 - LTR7 LTR ERV1 -2 448 1 2389 96 45 13 chrY 1636206 1636582 -49877002 - HERVH LTR ERV1 0 7713 7326 1337 153 19 0 chrY 1636584 1636800 -49876784 - HERVH LTR ERV1 -1894 5819 5600 4298 149 1 1 chrY 1636804 1637463 -49876121 - HERVH LTR ERV1 -2567 5146 4488 3261 124 6 2 chrY 1637465 1637965 -49875619 - HERVH LTR ERV1 -3720 3993 3492 844 162 20 0 chrY 1637955 1638103 -49875481 - HERVH LTR ERV1 -4423 3290 3140 * 16670 107 34 14 chrY 1638097 1641143 -49872441 - HERVH LTR ERV1 -4726 2987 1 3320 60 2 7 chrY 1641145 1641593 -49871991 - LTR7 LTR ERV1 -2 448 3 1526 205 135 29 chrY 1642297 1642740 -49870844 + LTR2B LTR ERV1 1 490 0 5048 135 30 24 chrY 1642874 1643738 -49869846 + MER4D LTR ERV1 4 872 0 2530 214 21 8 chrY 1644021 1644534 -49869050 - MLT2B1 LTR ERVL 0 520 1 375 247 52 81 chrY 1644585 1644759 -49868825 + MIR SINE MIR 69 237 -25 * 626 265 42 11 chrY 1644735 1644924 -49868660 - MIR SINE MIR 0 262 68 315 164 6 218 chrY 1645052 1645217 -49868367 - L1MC5 LINE L1 -998 6963 6834 409 259 40 53 chrY 1645218 1645465 -49868119 + L1MC5 LINE L1 6933 7176 -785 * 417 235 28 88 chrY 1645462 1645679 -49867905 + L1MC5 LINE L1 7128 7331 -630 255 103 0 0 chrY 1645777 1645816 -49867768 + (CA)n Simple_repeat Simple_repeat 2 40 0 640 198 5 64 chrY 1645830 1646032 -49867552 + L1MC5 LINE L1 7716 7905 -56 286 297 51 72 chrY 1646629 1646824 -49866760 - MIR SINE MIR 0 262 72 305 323 108 18 chrY 1647047 1647270 -49866314 + MIR SINE MIR 8 250 -12 466 310 25 39 chrY 1647273 1647476 -49866108 + MIR SINE MIR 60 259 -3 24 0 0 0 chrY 1647483 1647507 -49866077 + AT_rich Low_complexity Low_complexity 1 24 0 299 246 0 0 chrY 1648065 1648130 -49865454 + L1ME4a LINE L1 5518 5582 -539 412 196 0 18 chrY 1648148 1648260 -49865324 + GA-rich Low_complexity Low_complexity 2 111 0 976 100 0 0 chrY 1648298 1648428 -49865156 + AluSq/x SINE Alu 1 130 -183 229 68 45 0 chrY 1648428 1648472 -49865112 + (TA)n Simple_repeat Simple_repeat 2 47 0 25 0 0 0 chrY 1648472 1648497 -49865087 + AT_rich Low_complexity Low_complexity 1 25 0 351 99 78 7 chrY 1648500 1648642 -49864942 + (TA)n Simple_repeat Simple_repeat 2 153 0 1236 125 0 0 chrY 1648642 1648810 -49864774 + AluSp SINE Alu 133 300 -13 301 295 68 32 chrY 1648811 1648849 -49864735 + L1ME4a LINE L1 5609 5644 -477 1744 146 52 73 chrY 1648849 1649232 -49864352 - THE1C LTR MaLR 0 375 1 301 295 68 32 chrY 1649232 1649444 -49864140 + L1ME4a LINE L1 5644 5868 -253 263 256 66 33 chrY 1649487 1649608 -49863976 + L1ME4a LINE L1 5955 6079 -42 219 69 0 0 chrY 1649618 1649647 -49863937 + (TG)n Simple_repeat Simple_repeat 2 30 0 812 261 59 3 chrY 1650183 1650489 -49863095 + L1ME3A LINE L1 5840 6162 -8 27 29 0 0 chrY 1650947 1650981 -49862603 + AT_rich Low_complexity Low_complexity 1 34 0 460 304 94 9 chrY 1651113 1651452 -49862132 + LTR37A LTR ERV1 38 405 -21 372 211 164 20 chrY 1651471 1651623 -49861961 - L1ME4a LINE L1 -235 5886 5713 216 248 90 113 chrY 1651651 1651784 -49861800 + L2 LINE L2 3183 3312 -1 497 295 96 46 chrY 1651815 1652364 -49861220 + L1ME4a LINE L1 5437 6015 -106 1066 175 19 19 chrY 1652501 1652707 -49860877 + MER34 LTR ERV1 1 206 -336 545 133 211 39 chrY 1652709 1652837 -49860747 - MER66A-int LTR ERV1 -1969 4707 4558 410 221 23 23 chrY 1652838 1652924 -49860660 - MER4D LTR ERV1 -744 159 74 1127 169 0 101 chrY 1652927 1653205 -49860379 - MER66A-int LTR ERV1 -2246 4430 4181 541 169 108 97 chrY 1653226 1653421 -49860163 - MER66A-int LTR ERV1 -5452 1224 1028 2067 241 96 87 chrY 1653456 1654323 -49859261 - MER66A-int LTR ERV1 -5799 877 3 1352 206 159 37 chrY 1654326 1654769 -49858815 - MER66A LTR ERV1 0 478 97 559 157 9 61 chrY 1654856 1654971 -49858613 + MER34 LTR ERV1 431 539 -3 2616 135 8 8 chrY 1655166 1655825 -49857759 + MER34-int LTR ERV1 106 806 -6731 1605 189 4 0 chrY 1655818 1656082 -49857502 + MER57A-int LTR ERV1 361 625 -5321 * 21339 133 13 22 chrY 1656073 1659641 -49853943 + MER57A-int LTR ERV1 1705 5238 -2299 4703 137 7 0 chrY 1659635 1660345 -49853239 + MER57A-int LTR ERV1 6432 7146 -391 * 652 154 32 8 chrY 1660347 1660470 -49853114 + LTR54B LTR ERV1 3 128 -370 1436 112 125 0 chrY 1660470 1660702 -49852882 + MER57A-int LTR ERV1 7272 7532 -5 2173 178 13 0 chrY 1660706 1661104 -49852480 + MER57A LTR ERV1 1 403 0 599 311 0 24 chrY 1661857 1662024 -49851560 + MIR SINE MIR 44 206 -56 2304 192 70 2 chrY 1662120 1662621 -49850963 - MER34C LTR ERV1 -46 539 5 3381 167 25 76 chrY 1662625 1662642 -49850942 - L1MC1 LINE L1 -181 6152 6136 2303 141 11 8 chrY 1662642 1663005 -49850579 - THE1B LTR MaLR 0 364 1 3381 167 25 76 chrY 1663005 1663351 -49850233 - L1MC1 LINE L1 -197 6136 5844 2014 156 10 0 chrY 1663351 1663658 -49849926 - AluSx SINE Alu -2 310 1 3381 167 25 76 chrY 1663658 1664041 -49849543 - L1MC1 LINE L1 -489 5844 5443 2154 220 34 51 chrY 1664254 1664781 -49848803 + MER73 LTR ERVL 127 644 0 389 244 35 12 chrY 1664799 1664971 -49848613 + (TA)n Simple_repeat Simple_repeat 1 176 0 187 317 0 0 chrY 1665060 1665101 -49848483 + L2 LINE L2 3251 3291 -22 21 36 0 0 chrY 1665948 1665976 -49847608 + AT_rich Low_complexity Low_complexity 1 28 0 182 341 61 37 chrY 1666560 1666642 -49846942 + MIR SINE MIR 58 141 -67 32 26 0 0 chrY 1666973 1667012 -49846572 + AT_rich Low_complexity Low_complexity 1 39 0 244 246 14 35 chrY 1667173 1667315 -49846269 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 * 301 219 59 6 chrY 1667290 1667516 -49846068 + (TA)n Simple_repeat Simple_repeat 1 238 0 47 0 0 0 chrY 1667528 1667575 -49846009 + AT_rich Low_complexity Low_complexity 1 47 0 1176 158 19 10 chrY 1667619 1667828 -49845756 - MER61A LTR ERV1 0 343 133 4427 207 43 3 chrY 1667828 1668774 -49844810 - L1PA12 LINE L1 -3490 4094 3111 4917 266 32 36 chrY 1668787 1670784 -49842800 - L1PA12 LINE L1 -4643 2938 528 3164 178 4 2 chrY 1670787 1671288 -49842296 - L1PA12 LINE L1 -7077 504 3 553 161 0 11 chrY 1671489 1671582 -49842002 + LTR59 LTR ERV1 1 92 -505 1772 177 0 19 chrY 1671583 1671893 -49841691 + MER72 LTR ERV1 155 458 -264 1004 201 80 0 chrY 1671893 1672159 -49841425 - L1M2 LINE L1 -753 5393 5150 2065 203 30 14 chrY 1672162 1672600 -49840984 + L1MB1 LINE L1 5655 6099 -69 921 207 23 54 chrY 1672600 1672912 -49840672 - MER2 DNA MER2_type 0 345 2 414 136 0 62 chrY 1672913 1672994 -49840590 + L1MB1 LINE L1 6098 6173 -16 1746 272 90 140 chrY 1672995 1674002 -49839582 - L2 LINE L2 -137 3176 2257 241 254 60 15 chrY 1674002 1674069 -49839515 + MER112 DNA MER1_type 2 71 -189 1746 272 90 140 chrY 1674069 1675055 -49838529 - L2 LINE L2 -1056 2257 1223 2322 91 3 0 chrY 1675361 1675658 -49837926 + AluSc SINE Alu 1 298 -11 308 250 12 12 chrY 1676282 1676362 -49837222 - MIR SINE MIR -71 191 112 26 0 0 0 chrY 1676909 1676935 -49836649 + AT_rich Low_complexity Low_complexity 1 26 0 401 312 53 11 chrY 1677035 1677224 -49836360 + L1ME4a LINE L1 5631 5827 -294 7477 206 16 30 chrY 1677310 1679095 -49834489 + L1M1 LINE L1 15 1776 -5789 2140 229 53 9 chrY 1679096 1679677 -49833907 - L1M4 LINE L1 -745 5637 5031 1056 229 40 112 chrY 1679678 1680079 -49833505 + MLT1A2 LTR MaLR 3 374 0 2225 229 36 0 chrY 1680079 1680582 -49833002 + MLT1A2-int LTR MaLR 1 521 -1214 6107 105 7 24 chrY 1680602 1682505 -49831079 - L1PA10 LINE L1 0 6168 4268 4247 88 2 4 chrY 1682505 1683061 -49830523 + HERVL LTR ERVL 2401 2955 -2699 1692 96 0 0 chrY 1683061 1683280 -49830304 + MLT2A1 LTR ERVL 145 363 -81 549 0 0 0 chrY 1683281 1683342 -49830242 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 281 0 108 0 chrY 1683342 1683379 -49830205 + MLT2A1 LTR ERVL 404 444 0 470 134 24 0 chrY 1683379 1683461 -49830123 - L1PA10 LINE L1 -1873 4273 4190 1640 213 0 16 chrY 1683483 1683793 -49829791 + AluJo SINE Alu 3 307 -5 451 280 0 89 chrY 1683801 1683969 -49829615 + MLT1A2-int LTR MaLR 555 707 -664 1872 261 30 54 chrY 1684173 1684798 -49828786 + MLT1A2-int LTR MaLR 1126 1735 0 528 276 47 12 chrY 1684798 1684968 -49828616 + MLT1A2 LTR MaLR 1 176 -189 1027 234 28 3 chrY 1684979 1685300 -49828284 - L1M4 LINE L1 -1542 4840 4512 207 0 0 0 chrY 1685313 1685336 -49828248 + (TG)n Simple_repeat Simple_repeat 2 24 0 2968 256 84 46 chrY 1685379 1686370 -49827214 - L1M4 LINE L1 -3344 3038 2085 1649 203 102 2 chrY 1686370 1686764 -49826820 - Tigger2a DNA MER2_type -1 433 1 2968 256 84 46 chrY 1686764 1686935 -49826649 - L1M4 LINE L1 -4297 2085 1922 1562 239 10 32 chrY 1686935 1687163 -49826421 - MSTD LTR MaLR -4 392 175 2388 76 0 13 chrY 1687163 1687298 -49826286 + AluY SINE Alu 1 136 -175 2552 67 0 3 chrY 1687298 1687610 -49825974 + AluY SINE Alu 1 311 0 2388 76 0 13 chrY 1687610 1687778 -49825806 + AluY SINE Alu 136 300 -11 1562 239 10 32 chrY 1687778 1687950 -49825634 - MSTD LTR MaLR -221 175 1 2968 256 84 46 chrY 1687950 1688488 -49825096 - L1M4 LINE L1 -4460 1922 1405 1906 230 47 5 chrY 1688488 1688897 -49824687 + MSTB LTR MaLR 1 426 0 2968 256 84 46 chrY 1688897 1689350 -49824234 - L1M4 LINE L1 -4977 1405 813 2792 13 0 0 chrY 1689523 1689831 -49823753 - AluYb8 SINE Alu -10 308 1 444 108 0 0 chrY 1690356 1690421 -49823163 - AluJ/FLAM SINE Alu -247 65 1 7496 233 25 15 chrY 1690425 1692052 -49821532 - L1P LINE L1 -825 5321 3672 258 81 0 0 chrY 1692052 1692089 -49821495 + (TG)n Simple_repeat Simple_repeat 2 38 0 7496 233 25 15 chrY 1692089 1692407 -49821177 - L1P LINE L1 -2474 3672 3358 31 0 0 0 chrY 1694664 1694695 -49818889 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 1694712 1694736 -49818848 + AT_rich Low_complexity Low_complexity 1 24 0 336 143 0 0 chrY 1694871 1694927 -49818657 + (CA)n Simple_repeat Simple_repeat 1 56 0 1065 222 60 4 chrY 1694946 1695194 -49818390 - MLT2C1 LTR ERVL -48 349 88 21 0 0 0 chrY 1696158 1696179 -49817405 + AT_rich Low_complexity Low_complexity 1 21 0 816 267 0 42 chrY 1696255 1696446 -49817138 - MER5A DNA MER1_type 0 189 7 400 257 0 50 chrY 1696556 1696657 -49816927 - MER5B DNA MER1_type 0 178 83 6637 83 24 0 chrY 1696659 1697626 -49815958 - L1PA8 LINE L1 -7 6165 5192 7809 124 6 0 chrY 1697630 1698843 -49814741 + L1PA8 LINE L1 3985 5204 -942 42758 53 3 1 chrY 1699010 1705148 -49808436 + L1PA4 LINE L1 1 6152 -3 12615 188 40 7 chrY 1705617 1711801 -49801783 - L1PB2 LINE L1 -7 6860 472 313 282 0 24 chrY 1711807 1711892 -49801692 - MER20 DNA MER1_type -57 162 80 1990 152 3 7 chrY 1712559 1712862 -49800722 + AluSx SINE Alu 1 302 -10 1514 217 3 20 chrY 1713276 1713576 -49800008 + AluJo SINE Alu 3 297 -15 1858 152 40 37 chrY 1713601 1713975 -49799609 - THE1C LTR MaLR 0 375 1 3797 213 30 11 chrY 1714312 1715446 -49798138 - L1PB4 LINE L1 -2 7216 6057 1894 231 14 19 chrY 1715449 1715865 -49797719 + MSTB LTR MaLR 3 416 -10 3086 230 35 5 chrY 1715873 1716824 -49796760 - L1PB4 LINE L1 -1153 6055 5045 * 3741 258 18 43 chrY 1716795 1717294 -49796290 - L1PB4 LINE L1 -2834 4374 3864 7260 45 28 0 chrY 1717294 1718167 -49795417 + MER11D LTR ERVK 1 897 0 3741 258 18 43 chrY 1718167 1718236 -49795348 - L1PB4 LINE L1 -3344 3864 3795 2322 95 3 0 chrY 1718236 1718532 -49795052 + AluSp SINE Alu 1 297 -16 3741 258 18 43 chrY 1718532 1719638 -49793946 - L1PB4 LINE L1 -3413 3795 2789 949 145 22 112 chrY 1719640 1719819 -49793765 + MSTA LTR MaLR 1 163 -263 528 209 0 0 chrY 1719835 1719950 -49793634 - L1 LINE L1 -3598 3610 3496 26 0 0 0 chrY 1719950 1719976 -49793608 + AT_rich Low_complexity Low_complexity 1 26 0 1234 183 35 0 chrY 1719976 1720205 -49793379 + MSTA LTR MaLR 192 428 0 5922 186 15 32 chrY 1720249 1721423 -49792161 + MSTA-int LTR MaLR 427 1580 0 2410 172 19 9 chrY 1721423 1721847 -49791737 + MSTA LTR MaLR 1 428 0 2584 250 25 20 chrY 1721847 1722723 -49790861 - L1PB4 LINE L1 -4506 2703 1824 683 391 18 39 chrY 1722731 1723189 -49790395 - L1PB4 LINE L1 -5602 1607 1160 1828 307 68 16 chrY 1723815 1724509 -49789075 - L1PB4 LINE L1 -6476 733 4 365 289 78 35 chrY 1724544 1724776 -49788808 - L1ME LINE L1 -342 5779 5538 372 342 34 34 chrY 1725147 1725381 -49788203 - LTR16C LTR ERVL -6 485 252 23584 177 17 21 chrY 1727391 1731299 -49782285 + L1PA10 LINE L1 1 3924 -2559 3667 174 62 30 chrY 1731299 1732054 -49781530 + LTR19C LTR ERV1 1 779 0 23584 177 17 21 chrY 1732054 1732204 -49781380 + L1PA10 LINE L1 3924 4073 -2410 2124 135 48 25 chrY 1732204 1732560 -49781024 + THE1B LTR MaLR 1 364 0 10082 117 28 12 chrY 1732560 1734115 -49779469 + THE1B-int LTR MaLR 1 1580 0 1849 158 47 44 chrY 1734116 1734478 -49779106 + THE1B LTR MaLR 2 364 0 23584 177 17 21 chrY 1734478 1736910 -49776674 + L1PA10 LINE L1 4071 6472 -11 25 31 0 0 chrY 1737160 1737192 -49776392 + AT_rich Low_complexity Low_complexity 1 32 0 2651 283 53 52 chrY 1737432 1738168 -49775416 - L1MEc LINE L1 -2172 4043 3309 1994 112 4 0 chrY 1738168 1738484 -49775100 - AluSq SINE Alu 0 323 7 2651 283 53 52 chrY 1738484 1740133 -49773451 - L1MEc LINE L1 -2906 3309 1686 8895 202 20 32 chrY 1740251 1741076 -49772508 - L1PA15 LINE L1 -12 6153 5320 2212 78 0 3 chrY 1741076 1741415 -49772169 - AluY SINE Alu 0 338 1 8895 202 20 32 chrY 1741415 1743683 -49769901 - L1PA15 LINE L1 -845 5320 3061 7768 66 4 12 chrY 1743683 1744703 -49768881 + MER11C LTR ERVK 1 1012 -59 385 319 42 7 chrY 1746615 1746759 -49766825 + MIR SINE MIR 3 151 -111 250 328 93 49 chrY 1747050 1747297 -49766287 + LTR16B LTR ERVL 57 314 -150 1598 306 20 30 chrY 1748189 1748728 -49764856 + HERV16 LTR ERVL 894 1427 -3569 280 254 34 0 chrY 1748778 1748896 -49764688 + (TA)n Simple_repeat Simple_repeat 1 122 0 1905 142 16 13 chrY 1749018 1749329 -49764255 - AluJb SINE Alu 0 312 1 16272 190 52 10 chrY 1751427 1758804 -49754780 - L1MA2 LINE L1 -19 7704 12 2206 119 0 3 chrY 1758881 1759191 -49754393 - AluSx SINE Alu -2 310 2 1220 188 164 21 chrY 1759466 1759753 -49753831 - MLT1A1 LTR MaLR -32 333 6 846 240 23 46 chrY 1759877 1760094 -49753490 + MIR SINE MIR 36 247 -15 3392 64 9 0 chrY 1760219 1760659 -49752925 + L1PA7 LINE L1 5711 6154 0 24 0 0 0 chrY 1760695 1760719 -49752865 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrY 1760721 1760744 -49752840 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chrY 1761388 1761422 -49752162 + AT_rich Low_complexity Low_complexity 1 34 0 1706 129 5 74 chrY 1761732 1762103 -49751481 - MER4A LTR ERV1 0 664 261 551 134 21 10 chrY 1762103 1762200 -49751384 - MER4A LTR ERV1 -566 98 1 226 263 63 63 chrY 1763567 1763662 -49749922 + MIR SINE MIR 51 145 -63 312 361 0 13 chrY 1763830 1763988 -49749596 + MER117 DNA MER1_type 11 166 -31 387 359 128 24 chrY 1764730 1764876 -49748708 + L2 LINE L2 1811 1940 -1374 2275 140 146 91 chrY 1764876 1765505 -49748079 + MER4A LTR ERV1 1 664 0 387 359 128 24 chrY 1765505 1765779 -49747805 + L2 LINE L2 1940 2275 -1039 2604 99 19 140 chrY 1766517 1767032 -49746552 + MLT2A2 LTR ERVL 1 453 0 2045 300 25 16 chrY 1767329 1768000 -49745584 + L2 LINE L2 2035 2711 -603 682 218 21 0 chrY 1768138 1768280 -49745304 - MLT2A2 LTR ERVL 0 453 309 311 286 17 34 chrY 1768989 1769167 -49744417 - L1M4 LINE L1 -866 5280 5106 4579 56 8 7 chrY 1770046 1770636 -49742948 - LTR10C LTR ERV1 0 591 1 250 183 28 0 chrY 1770953 1771024 -49742560 + (CA)n Simple_repeat Simple_repeat 2 74 0 502 283 97 37 chrY 1772443 1772852 -49740732 - MLT1L LTR MaLR -7 608 109 1509 202 46 0 chrY 1772927 1773044 -49740540 + AluJb SINE Alu 4 114 -198 180 0 0 0 chrY 1773044 1773064 -49740520 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1509 202 46 0 chrY 1773064 1773228 -49740356 + AluJb SINE Alu 114 298 -14 33 43 0 0 chrY 1774032 1774079 -49739505 + AT_rich Low_complexity Low_complexity 1 47 0 212 220 0 20 chrY 1774963 1775013 -49738571 + (TA)n Simple_repeat Simple_repeat 2 50 0 715 164 176 4 chrY 1775013 1775178 -49738406 + MLT1B LTR MaLR 2 179 -195 789 283 64 32 chrY 1775190 1775722 -49737862 - MLT1G1 LTR MaLR 0 595 4 1627 144 186 45 chrY 1777040 1777394 -49736190 - MER4A LTR ERV1 0 664 261 693 91 0 10 chrY 1777394 1777493 -49736091 - MER4A LTR ERV1 -566 98 1 28 48 0 0 chrY 1777866 1777908 -49735676 + AT_rich Low_complexity Low_complexity 1 42 0 393 176 0 12 chrY 1778059 1778144 -49735440 - pTR5 LTR ERV1 -1237 1201 1118 4901 109 28 65 chrY 1778301 1779154 -49734430 + LTR12 LTR ERV1 5 826 0 2908 187 34 5 chrY 1779154 1779774 -49733810 + L1P LINE L1 4721 5361 -785 * 3794 247 46 3 chrY 1779773 1780826 -49732758 - L1PA13 LINE L1 -4413 2384 1278 1385 245 55 54 chrY 1780863 1781566 -49732018 - L1M4c LINE L1 -2465 3917 3214 316 286 9 19 chrY 1781567 1781672 -49731912 - L1M4c LINE L1 -4279 2105 2002 3014 258 55 38 chrY 1781676 1782872 -49730712 - L1M4c LINE L1 -4497 1887 665 1983 212 52 50 chrY 1782872 1782916 -49730668 - MLT2B1 LTR ERVL 0 520 478 351 0 0 0 chrY 1782916 1782955 -49730629 + (CA)n Simple_repeat Simple_repeat 2 40 0 1983 212 52 50 chrY 1782955 1783429 -49730155 - MLT2B1 LTR ERVL -42 478 1 3014 258 55 38 chrY 1783429 1783559 -49730025 - L1M4c LINE L1 -5719 665 539 1188 148 0 0 chrY 1784061 1784237 -49729347 + AluSq SINE Alu 38 213 -100 357 301 161 16 chrY 1784572 1784765 -49728819 - MIR SINE MIR 0 262 42 317 314 57 21 chrY 1785134 1785274 -49728310 + MIR SINE MIR 31 175 -87 553 268 11 112 chrY 1785293 1785569 -49728015 + MER21B LTR ERV1 1 248 -615 399 159 0 0 chrY 1785574 1785643 -49727941 + L1MA5 LINE L1 6147 6215 -85 1147 259 71 69 chrY 1785643 1785914 -49727670 + MER21B LTR ERV1 253 527 -336 2090 136 3 0 chrY 1785914 1786223 -49727361 - AluSx SINE Alu -2 310 1 1147 259 71 69 chrY 1786223 1786456 -49727128 + MER21B LTR ERV1 527 758 -105 2167 121 3 6 chrY 1787729 1788042 -49725542 - AluSx SINE Alu 0 312 1 2410 88 3 0 chrY 1788184 1788490 -49725094 + AluSp SINE Alu 3 309 -4 4026 188 47 12 chrY 1788669 1789131 -49724453 - L1PA16 LINE L1 -12 6154 5647 2216 110 0 0 chrY 1789131 1789421 -49724163 + AluSq SINE Alu 1 290 -23 4026 188 47 12 chrY 1789421 1789802 -49723782 - L1PA16 LINE L1 -519 5647 5281 509 173 0 0 chrY 1789802 1789906 -49723678 + L1PA16 LINE L1 5174 5277 -869 318 78 20 20 chrY 1789927 1789978 -49723606 + MER4A LTR ERV1 48 98 -566 1469 152 16 80 chrY 1789978 1790286 -49723298 + MER4A LTR ERV1 261 602 -62 1933 110 55 14 chrY 1790286 1790577 -49723007 - AluSc SINE Alu -6 303 1 1469 152 16 80 chrY 1790577 1790637 -49722947 + MER4A LTR ERV1 602 664 0 1773 312 24 17 chrY 1790637 1790914 -49722670 - L1PA12 LINE L1 -4651 2930 2656 3201 74 2 22 chrY 1790914 1791371 -49722213 - LTR7 LTR ERV1 -2 448 1 1773 312 24 17 chrY 1791371 1791840 -49721744 - L1PA12 LINE L1 -4925 2656 2179 2340 55 3 10 chrY 1792129 1792422 -49721162 - AluY SINE Alu -20 291 1 448 299 86 11 chrY 1792612 1792786 -49720798 + L2 LINE L2 3094 3280 -33 611 268 85 0 chrY 1793077 1793230 -49720354 - MER5B DNA MER1_type -12 166 1 2828 216 76 6 chrY 1793284 1793482 -49720102 - L1MB7 LINE L1 -8 6176 5993 183 42 0 0 chrY 1793482 1793506 -49720078 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2828 216 76 6 chrY 1793506 1794001 -49719583 - L1MB7 LINE L1 -191 5993 5434 2276 116 0 0 chrY 1794491 1794801 -49718783 + AluSg SINE Alu 1 310 0 447 206 131 0 chrY 1794911 1795018 -49718566 - L1PA15 LINE L1 -4 6161 6041 1833 148 70 25 chrY 1795020 1795377 -49718207 - THE1C LTR MaLR 0 375 3 1988 103 6 29 chrY 1795377 1795689 -49717895 - THE1C-int LTR MaLR -1 1579 1275 5791 115 10 18 chrY 1795697 1797153 -49716431 - L1PA11 LINE L1 -1 6173 4703 5059 149 5 2 chrY 1797153 1797996 -49715588 + L1PA11 LINE L1 3837 4681 -1465 2523 160 10 0 chrY 1798005 1798412 -49715172 - THE1C-int LTR MaLR -303 1277 867 492 176 46 9 chrY 1798417 1798525 -49715059 + MSTB1-int LTR MaLR 1539 1650 -1 1834 175 108 5 chrY 1798529 1798918 -49714666 + MSTB1 LTR MaLR 4 432 0 520 246 0 0 chrY 1798922 1799036 -49714548 + MER77 LTR ERV1 426 539 -66 1162 254 73 51 chrY 1799099 1799697 -49713887 + L1MC4 LINE L1 6458 7089 -953 4348 163 25 6 chrY 1799816 1800620 -49712964 - L1PB2 LINE L1 0 6151 5333 603 122 10 10 chrY 1800620 1800718 -49712866 + MER4A LTR ERV1 1 98 -566 1310 155 47 46 chrY 1800718 1801059 -49712525 + MER4A LTR ERV1 261 660 -4 9320 137 139 60 chrY 1801065 1803613 -49709971 + MER4A-int LTR ERV1 1 2485 -4113 5593 134 55 17 chrY 1803609 1804604 -49708980 + MER4A-int LTR ERV1 5516 6548 -50 * 405 0 0 0 chrY 1804604 1804649 -49708935 + (A)n Simple_repeat Simple_repeat 1 45 0 496 188 10 10 chrY 1804682 1804778 -49708806 + MER4A LTR ERV1 1 96 -568 1846 144 3 24 chrY 1804780 1805133 -49708451 + MER4A LTR ERV1 261 664 0 837 232 0 5 chrY 1805140 1805364 -49708220 - L1PB2 LINE L1 -817 5329 5107 1611 193 174 0 chrY 1805371 1805479 -49708105 + MSTA LTR MaLR 1 89 -339 287 25 25 0 chrY 1805479 1805519 -49708065 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 1611 193 174 0 chrY 1805519 1805773 -49707811 + MSTA LTR MaLR 89 426 -2 6212 213 36 15 chrY 1805775 1805857 -49707727 + MSTA-int LTR MaLR 1 80 -1571 2365 89 0 3 chrY 1805857 1806159 -49707425 + AluY SINE Alu 2 302 -9 6212 213 36 15 chrY 1806159 1807363 -49706221 + MSTA-int LTR MaLR 80 1314 -337 5098 73 0 12 chrY 1807363 1808019 -49705565 - LTR17 LTR ERV1 0 780 133 2060 143 6 23 chrY 1808019 1808235 -49705349 + MSTA-int LTR MaLR 1316 1525 -126 2413 108 128 5 chrY 1808235 1808634 -49704950 - LTR7 LTR ERV1 -2 448 1 2060 143 6 23 chrY 1808634 1808759 -49704825 + MSTA-int LTR MaLR 1525 1651 0 2208 182 39 0 chrY 1808759 1809171 -49704413 + MSTA LTR MaLR 1 428 0 8202 234 24 37 chrY 1809188 1809362 -49704222 - L1PB2 LINE L1 -1059 5087 4912 2142 136 0 3 chrY 1809362 1809672 -49703912 - AluSx SINE Alu -1 311 3 8202 234 24 37 chrY 1809672 1810124 -49703460 - L1PB2 LINE L1 -1234 4912 4456 1984 148 0 0 chrY 1810124 1810429 -49703155 - AluY SINE Alu -6 305 1 8202 234 24 37 chrY 1810429 1812300 -49701284 - L1PB2 LINE L1 -1690 4456 2622 320 234 47 19 chrY 1812830 1812937 -49700647 + LTR43 LTR ERV1 187 296 -306 9873 270 29 33 chrY 1812993 1816355 -49697229 + L1PA13 LINE L1 1 3358 -4226 11623 213 8 29 chrY 1816355 1818600 -49694984 + L1PA13 LINE L1 3953 6179 -1422 183 42 0 0 chrY 1818600 1818624 -49694960 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 11623 213 8 29 chrY 1818624 1820018 -49693566 + L1PA13 LINE L1 6179 7601 0 9873 270 29 33 chrY 1820018 1820030 -49693554 + L1PA13 LINE L1 3358 3369 -4215 2138 74 30 17 chrY 1820940 1821239 -49692345 + AluY SINE Alu 1 303 -8 1461 277 103 15 chrY 1822334 1822944 -49690640 - L1MC4 LINE L1 -132 7910 7247 1211 258 16 0 chrY 1822953 1823271 -49690313 - L1MC4 LINE L1 -953 7089 6767 341 257 56 23 chrY 1823272 1823400 -49690184 - L1MD3 LINE L1 -1431 6564 6446 1659 254 39 34 chrY 1824019 1824662 -49688922 + L1MC4 LINE L1 7265 7910 -132 231 183 33 0 chrY 1824665 1824767 -49688817 + (TA)n Simple_repeat Simple_repeat 1 105 0 33 56 0 0 chrY 1824842 1824896 -49688688 + AT_rich Low_complexity Low_complexity 1 54 0 4699 127 21 3 chrY 1824954 1825709 -49687875 + L1MA2 LINE L1 5535 6303 -1 232 385 58 0 chrY 1825719 1825875 -49687709 - L3b LINE CR1 -202 1381 1217 33 43 0 0 chrY 1825958 1826005 -49687579 + AT_rich Low_complexity Low_complexity 1 47 0 50 18 0 0 chrY 1826119 1826176 -49687408 + AT_rich Low_complexity Low_complexity 1 57 0 2504 53 3 7 chrY 1826489 1826791 -49686793 - AluSp SINE Alu -12 301 1 205 162 0 0 chrY 1826821 1826858 -49686726 + (TG)n Simple_repeat Simple_repeat 2 38 0 319 260 57 8 chrY 1827321 1827444 -49686140 - HAL1b LINE L1 -11 1337 1209 308 312 72 51 chrY 1827543 1827835 -49685749 - L1MD3 LINE L1 -1897 5911 5614 21 0 0 0 chrY 1828590 1828611 -49684973 + AT_rich Low_complexity Low_complexity 1 21 0 2202 107 0 3 chrY 1828906 1829206 -49684378 + AluSx SINE Alu 1 299 -13 188 111 28 0 chrY 1829463 1829499 -49684085 + T-rich Low_complexity Low_complexity 2 38 0 272 172 0 16 chrY 1829499 1829563 -49684021 + CT-rich Low_complexity Low_complexity 2 64 0 238 250 36 77 chrY 1829845 1829936 -49683648 - L1MEd LINE L1 -4917 1202 1120 1933 169 14 14 chrY 1829936 1830284 -49683300 + MER7A DNA MER2_type 1 346 0 238 250 36 77 chrY 1830284 1830360 -49683224 - L1MEd LINE L1 -4999 1120 1042 2206 98 7 0 chrY 1830382 1830677 -49682907 - AluSp SINE Alu -16 297 1 286 224 0 24 chrY 1830695 1830780 -49682804 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 272 211 11 106 chrY 1830862 1831042 -49682542 - L1MEd LINE L1 -5188 931 769 722 104 157 0 chrY 1831102 1831217 -49682367 - AluSq/x SINE Alu -180 133 1 658 79 0 0 chrY 1831822 1831911 -49681673 - L1PBa LINE L1 -4657 2206 2118 * 15163 145 22 90 chrY 1831909 1835306 -49678278 - L1P LINE L1 -2969 3177 12 21 0 0 0 chrY 1835452 1835473 -49678111 + AT_rich Low_complexity Low_complexity 1 21 0 5337 169 22 20 chrY 1835474 1836139 -49677445 - L1MA5A LINE L1 -4 6293 5624 1692 153 0 0 chrY 1836139 1836387 -49677197 - AluSq SINE Alu -65 248 1 5337 169 22 20 chrY 1836387 1836748 -49676836 - L1MA5A LINE L1 -673 5624 5265 3089 172 24 15 chrY 1836761 1837431 -49676153 - L1MA5A LINE L1 -1129 5017 4342 21 0 0 0 chrY 1837482 1837503 -49676081 + AT_rich Low_complexity Low_complexity 1 21 0 29847 112 16 47 chrY 1838821 1844766 -49668818 + L1P3 LINE L1 1 5763 -724 569 171 0 18 chrY 1844798 1844909 -49668675 - L1MD3 LINE L1 -999 6996 6888 365 136 15 0 chrY 1844910 1844976 -49668608 + CT-rich Low_complexity Low_complexity 4 70 0 302 258 100 68 chrY 1844976 1845166 -49668418 - L1MC3 LINE L1 -1107 6678 6483 2986 268 57 36 chrY 1845177 1847397 -49666187 - L1MC3 LINE L1 -743 5403 4017 442 184 68 60 chrY 1847570 1847739 -49665845 - L1ME LINE L1 -642 5522 5345 5330 104 8 5 chrY 1849654 1850432 -49663152 + L1PA10 LINE L1 5389 6168 0 21 0 0 0 chrY 1850485 1850506 -49663078 + AT_rich Low_complexity Low_complexity 1 21 0 2260 192 66 25 chrY 1851040 1851633 -49661951 + pTR5 LTR ERV1 729 1345 -1093 4558 111 21 117 chrY 1851648 1852557 -49661027 + LTR12 LTR ERV1 5 826 0 25 90 0 0 chrY 1852941 1853008 -49660576 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chrY 1854200 1854232 -49659352 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chrY 1855772 1855807 -49657777 + AT_rich Low_complexity Low_complexity 1 35 0 271 300 33 50 chrY 1855997 1856117 -49657467 + MER77 LTR ERV1 68 185 -420 593 241 33 71 chrY 1856162 1856379 -49657205 + MER21B LTR ERV1 142 354 -251 2688 138 37 16 chrY 1856379 1856967 -49656617 + MER4B LTR ERV1 1 779 0 5758 136 92 37 chrY 1856967 1857613 -49655971 + MER4B-int LTR ERV1 1 734 -6024 7403 145 16 25 chrY 1857613 1858900 -49654684 - MER52C LTR ERV1 -2 1276 1 5758 136 92 37 chrY 1858900 1859345 -49654239 + MER4B-int LTR ERV1 734 1153 -5605 294 73 0 0 chrY 1859348 1859389 -49654195 + (TG)n Simple_repeat Simple_repeat 2 42 0 3185 106 70 42 chrY 1859394 1859872 -49653712 + MER4B-int LTR ERV1 1458 1921 -4677 2677 93 3 0 chrY 1859872 1860226 -49653358 - THE1A LTR MaLR 0 355 1 3185 106 70 42 chrY 1860226 1860869 -49652715 + MER4B-int LTR ERV1 1921 2482 -4116 1682 145 5 77 chrY 1860869 1861241 -49652343 - MER4A LTR ERV1 0 664 261 594 113 21 10 chrY 1861241 1861338 -49652246 - MER4A LTR ERV1 -566 98 1 4357 124 45 13 chrY 1861339 1862089 -49651495 - MER4A-int LTR ERV1 0 6598 5825 311 185 0 0 chrY 1862118 1862172 -49651412 - L1PA8A LINE L1 -3 6128 6075 3269 209 31 7 chrY 1862175 1862770 -49650814 - L1MB2 LINE L1 -67 6104 5488 2242 101 6 19 chrY 1862770 1863086 -49650498 - AluSq SINE Alu -1 312 1 3269 209 31 7 chrY 1863086 1863207 -49650377 - L1MB2 LINE L1 -683 5488 5371 26 64 0 0 chrY 1863507 1863554 -49650030 + AT_rich Low_complexity Low_complexity 1 47 0 860 194 196 60 chrY 1863554 1863921 -49649663 + MSTC LTR MaLR 1 417 -11 1333 207 97 20 chrY 1864009 1864309 -49649275 - MLT1A1 LTR MaLR -42 323 1 1896 235 10 2 chrY 1864313 1864722 -49648862 - MLT1A1-int LTR MaLR -5 1730 1319 230 296 70 92 chrY 1864801 1864943 -49648641 - MLT1A1-int LTR MaLR -397 1338 1200 733 233 75 46 chrY 1864943 1865183 -49648401 + MLT1A1 LTR MaLR 119 365 0 2961 228 24 31 chrY 1865331 1865585 -49647999 - L1MB3 LINE L1 -2 6181 5927 5390 67 32 8 chrY 1865585 1866333 -49647251 + MER4E LTR ERV1 1 766 0 2961 228 24 31 chrY 1866333 1866862 -49646722 - L1MB3 LINE L1 -256 5927 5403 753 255 113 24 chrY 1866884 1867256 -49646328 - L1MB3 LINE L1 -1458 4688 4284 350 257 0 0 chrY 1867270 1867340 -49646244 + FRAM/FAM SINE Alu 1 70 -105 366 23 0 0 chrY 1867357 1867400 -49646184 + (CA)n Simple_repeat Simple_repeat 2 44 0 5036 259 35 21 chrY 1867400 1869452 -49644132 - L1 LINE L1 -2328 4520 2458 1996 168 53 26 chrY 1869452 1869869 -49643715 - MSTA LTR MaLR 0 428 1 8724 186 16 13 chrY 1869871 1871514 -49642070 - MSTA-int LTR MaLR -2 1649 2 2078 131 22 6 chrY 1871515 1871834 -49641750 - MSTA LTR MaLR 0 428 105 2614 99 42 5 chrY 1871834 1872218 -49641366 + MLT2A1 LTR ERVL 1 398 -46 353 231 0 0 chrY 1872226 1872291 -49641293 + MST-int LTR MaLR 1095 1159 -492 228 86 0 0 chrY 1872297 1872332 -49641252 + (TA)n Simple_repeat Simple_repeat 1 35 0 309 24 0 24 chrY 1872332 1872373 -49641211 + MLT2A2 LTR ERVL 414 453 0 * 547 171 43 3 chrY 1872373 1872476 -49641108 - MSTA LTR MaLR -249 115 3 4077 221 37 31 chrY 1872479 1873653 -49639931 - L1PA15-16 LINE L1 -4387 3197 2017 431 290 77 18 chrY 1873655 1873824 -49639760 - L1PA15-16 LINE L1 -5672 1913 1735 295 337 87 53 chrY 1873994 1874258 -49639326 - L1M2 LINE L1 -5781 1804 1532 306 328 106 88 chrY 1874265 1874585 -49638999 - L1M2 LINE L1 -5986 1599 1274 1134 303 31 36 chrY 1875288 1875775 -49637809 - L1M2 LINE L1 -6411 1174 6 1664 228 20 12 chrY 1875783 1876182 -49637402 - L1MCa LINE L1 -6005 421 20 2263 233 56 10 chrY 1876311 1877012 -49636572 - L1MB8 LINE L1 -246 5932 5208 514 263 17 56 chrY 1877088 1877267 -49636317 + MLT1A1 LTR MaLR 25 196 -169 817 250 46 5 chrY 1877284 1877480 -49636104 + MLT1A1 LTR MaLR 162 365 0 44 88 0 0 chrY 1879145 1879259 -49634325 + AT_rich Low_complexity Low_complexity 1 114 0 3840 218 40 30 chrY 1879263 1880955 -49632629 + L1MB3 LINE L1 4077 5786 -394 1718 206 9 15 chrY 1880957 1881297 -49632287 + MER2 DNA MER2_type 3 340 -5 1840 133 41 85 chrY 1881299 1881711 -49631873 + L1MB3 LINE L1 5783 6176 -7 616 285 59 14 chrY 1881953 1882174 -49631410 - MIR SINE MIR -26 236 6 257 327 154 13 chrY 1882171 1882327 -49631257 - MIR SINE MIR -67 195 18 * 328 315 65 74 chrY 1882498 1882822 -49630762 + L1M4 LINE L1 3191 3511 -2635 1593 200 15 63 chrY 1882906 1883288 -49630296 + MLT1B LTR MaLR 1 363 -27 4295 108 14 17 chrY 1883288 1883325 -49630259 - LTR9B LTR ERV1 0 644 608 2773 19 0 6 chrY 1883325 1883637 -49629947 - AluY SINE Alu -1 310 1 4295 108 14 17 chrY 1883637 1884245 -49629339 - LTR9B LTR ERV1 -36 608 1 1593 200 15 63 chrY 1884245 1884272 -49629312 + MLT1B LTR MaLR 363 390 0 1281 356 69 11 chrY 1884498 1885740 -49627844 + L1M3a LINE L1 2 847 -5108 * 1803 255 48 2 chrY 1885736 1886336 -49627248 + L1M3a LINE L1 2512 3139 -2895 451 83 0 0 chrY 1886336 1886396 -49627188 - MSTA LTR MaLR 0 428 369 1285 185 63 69 chrY 1886416 1886603 -49626981 + L1MA9 LINE L1 5626 5813 -499 2231 104 0 3 chrY 1886603 1886892 -49626692 - AluSg SINE Alu -21 289 2 1285 185 63 69 chrY 1886892 1887335 -49626249 + L1MA9 LINE L1 5813 6290 -22 369 358 74 37 chrY 1887446 1887742 -49625842 + L1M2 LINE L1 10 316 -6533 1283 99 5 38 chrY 1887752 1887964 -49625620 + L1PA11 LINE L1 5970 6174 0 270 111 0 173 chrY 1887964 1888045 -49625539 + L1MA9 LINE L1 6246 6312 0 10516 231 16 4 chrY 1888048 1890704 -49622880 - L1P LINE L1 -796 5350 2662 8652 255 47 17 chrY 1890690 1893211 -49620373 - L1PA13 LINE L1 -4183 2614 1 * 417 263 32 0 chrY 1893225 1893381 -49620203 - Zaphod DNA AcHobo -2981 1050 890 24 53 0 0 chrY 1893385 1893423 -49620161 + AT_rich Low_complexity Low_complexity 1 38 0 265 224 141 12 chrY 1893673 1893758 -49619826 - MIR SINE MIR -71 191 96 364 338 32 32 chrY 1895237 1895453 -49618131 + MIR SINE MIR 40 255 -7 468 226 0 0 chrY 1896317 1896401 -49617183 - AluJ/FLAM SINE Alu -228 84 1 620 287 15 65 chrY 1896431 1896692 -49616892 - MIR SINE MIR 0 262 15 21 36 0 0 chrY 1897355 1897383 -49616201 + AT_rich Low_complexity Low_complexity 1 28 0 403 258 22 32 chrY 1897588 1897725 -49615859 + L1MC5 LINE L1 6766 6900 -908 394 255 28 75 chrY 1897749 1897961 -49615623 + L1MC5 LINE L1 6908 7109 -852 288 0 0 0 chrY 1898037 1898069 -49615515 + (TG)n Simple_repeat Simple_repeat 1 32 0 350 246 75 26 chrY 1898244 1898512 -49615072 + L1MC5 LINE L1 7472 7752 -209 908 319 60 30 chrY 1898516 1898986 -49614598 + L1PA16 LINE L1 1 484 -7097 8809 223 37 16 chrY 1898994 1902542 -49611042 + L1PA16 LINE L1 3954 7600 -4 25 0 0 0 chrY 1902563 1902588 -49610996 + AT_rich Low_complexity Low_complexity 1 25 0 214 210 113 32 chrY 1902632 1902694 -49610890 - MIR SINE MIR -152 110 44 22 0 0 0 chrY 1902920 1902942 -49610642 + AT_rich Low_complexity Low_complexity 1 22 0 269 54 89 0 chrY 1903866 1903922 -49609662 - L1MA7 LINE L1 0 6291 6231 5994 128 17 14 chrY 1904166 1905151 -49608433 - L1MA2 LINE L1 0 7723 6736 183 42 0 0 chrY 1905151 1905175 -49608409 + (TTG)n Simple_repeat Simple_repeat 1 24 0 995 143 0 0 chrY 1905175 1905322 -49608262 - AluSg/x SINE Alu -31 281 135 17704 194 25 29 chrY 1905322 1906861 -49606723 - L1MA2 LINE L1 -1376 6189 4645 2087 140 0 0 chrY 1906861 1907153 -49606431 - AluSx SINE Alu -18 294 3 17704 194 25 29 chrY 1907153 1908902 -49604682 - L1MA2 LINE L1 -2920 4645 2890 198 0 0 0 chrY 1908902 1908924 -49604660 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 17704 194 25 29 chrY 1908924 1909541 -49604043 - L1MA2 LINE L1 -4675 2890 2272 2849 174 17 42 chrY 1909541 1910132 -49603452 - LTR22 LTR ERVK -4 576 1 17704 194 25 29 chrY 1910132 1910501 -49603083 - L1MA2 LINE L1 -5293 2272 1903 2294 82 0 38 chrY 1910501 1910817 -49602767 - AluY SINE Alu -7 304 1 17704 194 25 29 chrY 1910817 1912732 -49600852 - L1MA2 LINE L1 -5662 1903 22 8433 186 29 24 chrY 1912855 1914385 -49599199 - L1MA2 LINE L1 0 7723 6203 3373 196 19 80 chrY 1914385 1915416 -49598168 + LTR5 LTR ERVK 1 969 0 8433 186 29 24 chrY 1915416 1915632 -49597952 - L1MA2 LINE L1 -1520 6203 5990 1935 116 0 38 chrY 1915632 1915973 -49597611 - AluSc SINE Alu 0 330 1 8433 186 29 24 chrY 1915973 1917355 -49596229 - L1MA2 LINE L1 -1733 5990 4572 10268 169 138 9 chrY 1917371 1919540 -49594044 - L1MA2 LINE L1 -4287 3278 831 2094 157 11 16 chrY 1919540 1919904 -49593680 + THE1B LTR MaLR 1 362 -2 9663 132 34 35 chrY 1919910 1921488 -49592096 + THE1B-int LTR MaLR 6 1580 0 2297 142 11 0 chrY 1921488 1921848 -49591736 + THE1B LTR MaLR 1 364 0 3440 236 39 20 chrY 1921849 1922645 -49590939 - L1MA2 LINE L1 -6731 834 24 201 121 0 0 chrY 1922676 1922709 -49590875 + (T)n Simple_repeat Simple_repeat 1 33 0 23 33 0 0 chrY 1922848 1922878 -49590706 + AT_rich Low_complexity Low_complexity 1 30 0 350 335 20 69 chrY 1923074 1923203 -49590381 + L1MDa LINE L1 17 134 -6406 2566 61 0 3 chrY 1923203 1923514 -49590070 + AluY SINE Alu 1 310 -1 350 335 20 69 chrY 1923514 1923587 -49589997 + L1MDa LINE L1 134 209 -6331 277 301 38 30 chrY 1924155 1924288 -49589296 + L1MDa LINE L1 882 1015 -5528 438 243 2 45 chrY 1924299 1924475 -49589109 + L1MDa LINE L1 999 1167 -5363 909 269 74 37 chrY 1924518 1925194 -49588390 + L1MDa LINE L1 1296 2756 -3784 * 3878 196 37 1 chrY 1925191 1925999 -49587585 - L1P LINE L1 -1004 5142 4306 1859 101 27 20 chrY 1925988 1926285 -49587299 + L1PA13 LINE L1 5746 6044 -119 * 1988 184 28 14 chrY 1926285 1926644 -49586940 + THE1B LTR MaLR 1 364 0 10504 121 25 3 chrY 1926644 1928177 -49585407 + THE1B-int LTR MaLR 11 1580 0 2110 164 28 17 chrY 1928177 1928537 -49585047 + THE1B LTR MaLR 1 364 0 766 124 8 0 chrY 1928537 1928658 -49584926 + L1PA13 LINE L1 6040 6161 -2 3749 234 27 5 chrY 1928661 1929729 -49583855 + L1MDa LINE L1 2740 3831 -2709 * 4178 187 57 16 chrY 1929720 1930689 -49582895 + L1MA8 LINE L1 5277 6285 -6 632 294 58 10 chrY 1930692 1930985 -49582599 + L1ME1 LINE L1 1895 2201 -4339 6133 152 39 4 chrY 1931007 1932090 -49581494 + HSMAR2 DNA Mariner 180 1300 -2 4207 235 79 115 chrY 1932148 1933366 -49580218 + L1ME1 LINE L1 2415 3675 -2865 2223 106 0 0 chrY 1933366 1933659 -49579925 + AluSc SINE Alu 1 293 -16 4207 235 79 115 chrY 1933659 1933744 -49579840 + L1ME1 LINE L1 3675 3761 -2779 186 43 0 0 chrY 1933744 1933767 -49579817 + (CA)n Simple_repeat Simple_repeat 2 24 0 4207 235 79 115 chrY 1933767 1933784 -49579800 + L1ME1 LINE L1 3761 3777 -2763 817 238 6 11 chrY 1933784 1933965 -49579619 + FRAM SINE Alu 1 176 0 4207 235 79 115 chrY 1933965 1935769 -49577815 + L1ME1 LINE L1 3777 5589 -951 11411 136 6 14 chrY 1935770 1936631 -49576953 + L1PA10 LINE L1 3412 4278 -1896 2440 77 0 0 chrY 1936631 1936942 -49576642 - AluY SINE Alu 0 311 1 11411 136 6 14 chrY 1936942 1938683 -49574901 + L1PA10 LINE L1 4278 5994 -180 552 107 0 0 chrY 1938684 1938768 -49574816 + L1PA10 LINE L1 6085 6168 0 1960 263 38 87 chrY 1938771 1939777 -49573807 + L1ME1 LINE L1 5583 6541 -19 367 353 85 5 chrY 1940252 1940476 -49573108 + L1MEc LINE L1 803 1044 -5352 1395 162 20 0 chrY 1940605 1940852 -49572732 + L1PA16 LINE L1 5909 6160 -6 22 70 0 0 chrY 1940867 1940910 -49572674 + AT_rich Low_complexity Low_complexity 1 43 0 2219 237 44 4 chrY 1941282 1941785 -49571799 + Tigger7 DNA MER2_type 44 566 -1921 2204 288 93 16 chrY 1941830 1943472 -49570112 + L1M4 LINE L1 2758 4525 -1621 868 152 72 72 chrY 1943611 1943848 -49569736 - MLT1B LTR MaLR 0 390 154 768 214 17 16 chrY 1943859 1944065 -49569519 + L1ME2 LINE L1 5732 5942 -252 3887 119 58 80 chrY 1944098 1944889 -49568695 + LTR1 LTR ERV1 12 785 0 329 178 68 0 chrY 1945090 1945163 -49568421 + L1ME2 LINE L1 6078 6155 -9 21 36 0 0 chrY 1945234 1945262 -49568322 + AT_rich Low_complexity Low_complexity 1 28 0 891 261 43 4 chrY 1945262 1945496 -49568088 - MIR SINE MIR -13 249 7 301 253 13 0 chrY 1946227 1946306 -49567278 - MER116 DNA Mariner 0 80 1 6057 97 3 6 chrY 1946622 1947698 -49565886 - L1PA13 LINE L1 -1 6162 5075 352 153 0 0 chrY 1947698 1947757 -49565827 + L1M4 LINE L1 3901 3959 -2187 246 340 19 28 chrY 1948871 1948977 -49564607 - L3b LINE CR1 -87 1496 1392 1033 96 7 0 chrY 1949261 1949397 -49564187 + AluSq/x SINE Alu 1 137 -175 2040 96 7 18 chrY 1949400 1949682 -49563902 + AluSg SINE Alu 5 283 -27 2298 92 3 0 chrY 1949908 1950214 -49563370 - AluSg SINE Alu -3 307 1 3984 152 33 16 chrY 1950768 1951236 -49562348 + MER50 LTR ERV1 1 486 -248 2128 91 9 35 chrY 1951236 1951554 -49562030 + AluSx SINE Alu 1 310 -2 3984 152 33 16 chrY 1951554 1951784 -49561800 + MER50 LTR ERV1 486 711 -23 568 335 45 0 chrY 1954942 1955121 -49558463 + MIR SINE MIR 76 262 0 346 357 51 0 chrY 1956600 1956757 -49556827 - MIR SINE MIR 0 262 98 267 54 0 0 chrY 1957446 1957483 -49556101 + (CA)n Simple_repeat Simple_repeat 2 38 0 2325 241 42 2 chrY 1957596 1958115 -49555469 - LTR9B LTR ERV1 0 644 105 510 306 108 13 chrY 1958371 1958603 -49554981 - MIR SINE MIR -8 254 1 319 264 157 0 chrY 1958680 1958801 -49554783 - MIR SINE MIR -3 259 120 745 262 16 5 chrY 1959294 1959481 -49554103 + MER5A DNA MER1_type 1 189 0 24 53 0 0 chrY 1959665 1959703 -49553881 + AT_rich Low_complexity Low_complexity 1 38 0 38 61 0 0 chrY 1960049 1960115 -49553469 + AT_rich Low_complexity Low_complexity 1 66 0 5735 60 3 7 chrY 1960190 1960943 -49552641 - L1PA7 LINE L1 0 6154 5405 5384 75 3 1 chrY 1962774 1963485 -49550099 - L1PA7 LINE L1 -4 6150 5439 538 153 57 57 chrY 1963612 1963769 -49549815 + L1MC/D LINE L1 5362 5518 -724 3019 266 70 33 chrY 1963922 1966191 -49547393 + L1MD3 LINE L1 3998 5403 -743 379 234 96 69 chrY 1966177 1966365 -49547219 + L1MC3 LINE L1 6486 6678 -1107 * 356 147 13 0 chrY 1966365 1966440 -49547144 + GA-rich Low_complexity Low_complexity 4 79 0 745 144 0 28 chrY 1966443 1966624 -49546960 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 228 35 0 0 chrY 1966629 1966658 -49546926 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1222 255 8 21 chrY 1966659 1967032 -49546552 + L1MD3 LINE L1 6909 7276 -719 537 226 0 32 chrY 1967035 1967159 -49546425 + MLT1F1 LTR MaLR 2 121 -446 1216 218 25 4 chrY 1967159 1967434 -49546150 + L1MD3 LINE L1 7402 7682 -313 1969 148 0 0 chrY 1967596 1967909 -49545675 + AluSx SINE Alu 1 313 0 73 23 0 0 chrY 1967999 1968086 -49545498 + AT_rich Low_complexity Low_complexity 1 87 0 34 24 0 0 chrY 1969649 1969690 -49543894 + AT_rich Low_complexity Low_complexity 1 41 0 276 293 54 42 chrY 1969933 1970100 -49543484 + MIR SINE MIR 78 246 -16 408 208 40 0 chrY 1970110 1970211 -49543373 - Ricksha_b DNA DNA -8 1643 1539 18061 187 36 19 chrY 1970231 1973976 -49539608 + L1MA2 LINE L1 18 3833 -3732 6801 151 15 5 chrY 1973980 1976002 -49537582 + L1MA2 LINE L1 5684 7723 0 5920 163 57 3 chrY 1976071 1977136 -49536448 - Ricksha_b DNA DNA -131 1123 1 268 267 100 0 chrY 1977417 1977477 -49536107 + MIR3 SINE MIR 91 156 -52 32 0 0 0 chrY 1978741 1978773 -49534811 + AT_rich Low_complexity Low_complexity 1 32 0 675 236 70 118 chrY 1980149 1980718 -49532866 + MLT1F LTR MaLR 1 542 0 22 0 0 0 chrY 1981554 1981576 -49532008 + AT_rich Low_complexity Low_complexity 1 22 0 777 124 8 0 chrY 1981604 1981733 -49531851 - L1MA5 LINE L1 -11 6289 6160 1119 158 10 0 chrY 1981934 1982130 -49531454 - L1MA4 LINE L1 -152 6148 5951 16751 167 31 18 chrY 1982139 1983257 -49530327 - L1PB1 LINE L1 -7 6860 5758 1633 129 20 109 chrY 1983257 1983605 -49529979 + AluYb8 SINE Alu 1 317 -1 16751 167 31 18 chrY 1983605 1984250 -49529334 - L1PB1 LINE L1 -1109 5758 5123 189 0 0 0 chrY 1984250 1984271 -49529313 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 16751 167 31 18 chrY 1984271 1989248 -49524336 - L1PB1 LINE L1 -1744 5123 3 255 61 0 0 chrY 1989415 1989448 -49524136 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 7109 156 23 34 chrY 1990211 1990500 -49523084 - L1MA3 LINE L1 -2 6303 6012 189 0 0 0 chrY 1990500 1990521 -49523063 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7109 156 23 34 chrY 1990521 1992767 -49520817 - L1MA3 LINE L1 -293 6012 3797 3267 267 47 27 chrY 1992769 1995354 -49518230 - L1M4 LINE L1 -2835 3547 823 180 0 0 0 chrY 1995354 1995374 -49518210 + (T)n Simple_repeat Simple_repeat 1 20 0 2396 75 0 7 chrY 1995434 1995742 -49517842 - AluY SINE Alu -5 306 1 229 269 0 0 chrY 1996419 1996471 -49517113 - L1M4 LINE L1 -6301 83 32 23 0 0 0 chrY 1997391 1997414 -49516170 + AT_rich Low_complexity Low_complexity 1 23 0 343 320 26 33 chrY 1997620 1997773 -49515811 + MER5A DNA MER1_type 9 160 -29 5716 147 33 25 chrY 1998749 1999615 -49513969 - L1PB1 LINE L1 0 6151 5257 3256 45 2 2 chrY 1999615 2000017 -49513567 - L1PA7 LINE L1 0 6154 5753 5716 147 33 25 chrY 2000017 2000775 -49512809 - L1PB1 LINE L1 -894 5257 4506 203 135 39 58 chrY 2000929 2000981 -49512603 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3127 221 9 5 chrY 2000988 2001881 -49511703 - L1PA13 LINE L1 -4253 2544 1634 2981 289 25 20 chrY 2001998 2002793 -49510791 - L1PA13 LINE L1 -5988 799 1 750 206 0 0 chrY 2002806 2002947 -49510637 - FLAM_C SINE Alu -2 141 1 202 340 89 36 chrY 2003438 2003685 -49509899 + L2 LINE L2 1752 2011 -1303 300 374 73 45 chrY 2003711 2004160 -49509424 + L2 LINE L2 2218 2679 -635 222 316 0 0 chrY 2004371 2004428 -49509156 + L2 LINE L2 2992 3048 -224 1883 146 10 0 chrY 2004783 2005071 -49508513 + AluSx SINE Alu 1 291 -21 21 0 0 0 chrY 2005668 2005689 -49507895 + AT_rich Low_complexity Low_complexity 1 21 0 1894 263 19 12 chrY 2005961 2006475 -49507109 + LTR40a LTR ERVL 2 519 0 29 28 0 0 chrY 2006643 2006679 -49506905 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chrY 2008176 2008201 -49505383 + AT_rich Low_complexity Low_complexity 1 25 0 345 328 34 0 chrY 2008695 2008814 -49504770 - L3 LINE CR1 -1 1576 1454 2261 96 7 0 chrY 2009266 2009558 -49504026 + AluSx SINE Alu 1 294 -18 521 186 106 0 chrY 2009743 2009856 -49503728 - MER94 DNA DNA -4 130 6 683 185 135 0 chrY 2009926 2010062 -49503522 - L1MA9 LINE L1 0 6312 6145 240 111 0 0 chrY 2010062 2010098 -49503486 + (TG)n Simple_repeat Simple_repeat 1 36 0 683 185 135 0 chrY 2010098 2010139 -49503445 - L1MA9 LINE L1 -167 6145 6111 571 159 28 0 chrY 2010135 2010242 -49503342 + L1MA9 LINE L1 6029 6138 -174 * 2451 248 73 29 chrY 2010322 2011115 -49502469 - L1ME2 LINE L1 -9 6155 5328 33 25 0 0 chrY 2011460 2011500 -49502084 + AT_rich Low_complexity Low_complexity 1 40 0 1197 247 69 44 chrY 2013479 2013960 -49499624 - L1ME2 LINE L1 -975 5171 4679 770 184 0 0 chrY 2014276 2014417 -49499167 - L1PA15 LINE L1 -4 6161 6021 6312 159 11 136 chrY 2014418 2015608 -49497976 - MSTA-int LTR MaLR -193 1387 441 2188 116 3 0 chrY 2015608 2015901 -49497683 - AluSx SINE Alu -18 294 1 6312 159 11 136 chrY 2015901 2016292 -49497292 - MSTA-int LTR MaLR -1139 441 3 2034 141 141 5 chrY 2016296 2016671 -49496913 - MSTA LTR MaLR -2 426 1 1084 267 65 28 chrY 2016895 2017292 -49496292 + L1MC4 LINE L1 6459 6870 -1172 371 237 17 34 chrY 2017288 2017406 -49496178 + L1MC4 LINE L1 7775 7890 -152 * 467 126 0 2 chrY 2017598 2017676 -49495908 - L1PA14 LINE L1 -191 5963 5887 324 218 73 18 chrY 2018315 2018425 -49495159 + MER4C LTR ERV1 1 116 -349 474 207 14 163 chrY 2018495 2018759 -49494825 + LTR34 LTR ERV1 136 455 -244 362 159 214 35 chrY 2018759 2018870 -49494714 + LTR34 LTR ERV1 278 496 -203 454 88 44 0 chrY 2018870 2018938 -49494646 - L1PA13 LINE L1 -330 5838 5768 2009 106 3 0 chrY 2018942 2019234 -49494350 + L1PA13 LINE L1 5860 6152 -11 588 246 44 22 chrY 2019253 2019436 -49494148 + MER4C LTR ERV1 275 461 -4 21 0 0 31 chrY 2019612 2019631 -49493953 + AT_rich Low_complexity Low_complexity 1 20 -11 1960 125 11 0 chrY 2019631 2019912 -49493672 - AluSg SINE Alu -26 284 1 21 0 0 31 chrY 2019912 2019924 -49493660 + AT_rich Low_complexity Low_complexity 20 31 0 274 336 96 0 chrY 2020379 2020504 -49493080 - MIR SINE MIR -31 231 95 245 200 0 36 chrY 2020785 2020840 -49492744 + L2 LINE L2 3205 3257 -15 21 100 0 0 chrY 2021128 2021198 -49492386 + AT_rich Low_complexity Low_complexity 1 70 0 857 327 88 34 chrY 2021287 2021841 -49491743 + L1PA16 LINE L1 788 1371 -6203 495 294 18 0 chrY 2021909 2022097 -49491487 + L1PA16 LINE L1 2083 2300 -5274 11537 260 33 10 chrY 2022326 2025064 -49488520 + L1PA16 LINE L1 2182 5084 -2500 207 0 0 0 chrY 2025064 2025087 -49488497 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 11537 260 33 10 chrY 2025087 2026845 -49486739 + L1PA16 LINE L1 5084 6801 -783 3862 115 11 4 chrY 2026855 2027561 -49486023 + L1P4 LINE L1 5106 5814 -349 4073 170 18 1 chrY 2027576 2028313 -49485271 + L1PA16 LINE L1 6846 7594 -10 3823 223 14 2 chrY 2028313 2029285 -49484299 + L1 LINE L1 4327 5310 -836 * 9224 193 18 18 chrY 2029259 2030541 -49483043 + L1P4 LINE L1 3271 4551 -1614 2446 82 0 0 chrY 2030541 2030835 -49482749 + AluY SINE Alu 1 294 -17 9224 193 18 18 chrY 2030835 2031823 -49481761 + L1P4 LINE L1 4551 5537 -628 7425 33 0 0 chrY 2031823 2033041 -49480543 - L1PA4 LINE L1 -2 6153 4933 25168 40 3 1 chrY 2033041 2036916 -49476668 + L1P LINE L1 810 4691 -1455 1161 134 6 0 chrY 2036910 2037089 -49476495 + L1P4 LINE L1 5523 5702 -464 * 1124 192 33 0 chrY 2037771 2038016 -49475568 + L1MB7 LINE L1 5923 6175 -9 508 265 111 19 chrY 2038198 2038360 -49475224 + MIR SINE MIR 37 213 -49 530 316 19 6 chrY 2038594 2038752 -49474832 + MIR SINE MIR 14 173 -89 1201 151 4 100 chrY 2038763 2039021 -49474563 - MSTB2 LTR MaLR 0 457 225 2133 195 2 5 chrY 2039021 2039416 -49474168 - MER57A LTR ERV1 0 403 10 937 233 30 0 chrY 2039422 2039624 -49473960 - MSTB2 LTR MaLR -249 208 1 10285 162 34 18 chrY 2040131 2040333 -49473251 - L1MA2 LINE L1 0 6304 6107 2125 124 3 0 chrY 2040333 2040639 -49472945 - AluSp SINE Alu -6 307 1 10285 162 34 18 chrY 2040639 2042473 -49471111 - L1MA2 LINE L1 -197 6107 4303 450 36 0 0 chrY 2042473 2042529 -49471055 + (TG)n Simple_repeat Simple_repeat 1 56 0 10285 162 34 18 chrY 2042529 2043078 -49470506 - L1MA2 LINE L1 -2001 4303 3764 387 0 0 0 chrY 2043078 2043121 -49470463 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 10285 162 34 18 chrY 2043121 2043594 -49469990 - L1MA2 LINE L1 -2540 3764 3206 1779 170 7 13 chrY 2044570 2044876 -49468708 + MER7A DNA MER2_type 45 346 0 341 332 100 11 chrY 2045614 2045804 -49467780 - MIR SINE MIR -54 208 2 24 77 0 0 chrY 2046001 2046053 -49467531 + AT_rich Low_complexity Low_complexity 1 52 0 2705 29 0 6 chrY 2046597 2046908 -49466676 + AluY SINE Alu 1 309 -2 21 0 0 0 chrY 2048003 2048024 -49465560 + AT_rich Low_complexity Low_complexity 1 21 0 2617 20 0 0 chrY 2048134 2048428 -49465156 + AluY SINE Alu 1 294 -17 234 0 0 0 chrY 2048428 2048454 -49465130 + (TA)n Simple_repeat Simple_repeat 2 27 0 3324 140 8 9 chrY 2050811 2051629 -49461955 - L1M1 LINE L1 -528 7193 6377 1828 112 158 78 chrY 2051629 2052003 -49461581 - MER4A LTR ERV1 0 664 261 645 120 0 20 chrY 2052003 2052103 -49461481 - MER4A LTR ERV1 -566 98 1 12084 190 24 20 chrY 2052103 2055632 -49457952 - L1M1 LINE L1 -1185 6380 2853 182 33 67 0 chrY 2055632 2055662 -49457922 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 12084 190 24 20 chrY 2055662 2055752 -49457832 - L1M1 LINE L1 -4712 2853 2765 5858 227 42 5 chrY 2055749 2057036 -49456548 - L1M1 LINE L1 -6219 1346 12 * 32 26 0 0 chrY 2057082 2057121 -49456463 + AT_rich Low_complexity Low_complexity 1 39 0 792 292 161 11 chrY 2057212 2057585 -49455999 + MLT1J2 LTR MaLR 1 429 -21 28 0 0 0 chrY 2058060 2058088 -49455496 + AT_rich Low_complexity Low_complexity 1 28 0 9255 169 171 9 chrY 2058468 2060189 -49453395 + L1PA12 LINE L1 5 2004 -5577 2785 283 134 12 chrY 2060187 2061007 -49452577 + L1PA13 LINE L1 339 1258 -5529 * 3854 169 4 17 chrY 2061008 2061704 -49451880 + L1PA13 LINE L1 1394 2082 -4705 1845 181 3 0 chrY 2061704 2062007 -49451577 + AluSx SINE Alu 7 310 -2 3854 169 4 17 chrY 2062007 2062020 -49451564 + L1PA13 LINE L1 2082 2094 -4693 * 16982 166 16 24 chrY 2062008 2062794 -49450790 + L1PA13 LINE L1 2494 3285 -3529 441 0 0 0 chrY 2062794 2062843 -49450741 + (TA)n Simple_repeat Simple_repeat 2 50 0 16982 166 16 24 chrY 2062843 2063150 -49450434 + L1PA13 LINE L1 3285 3593 -3221 1948 136 21 0 chrY 2063150 2063437 -49450147 + AluSx SINE Alu 1 293 -19 16982 166 16 24 chrY 2063437 2064841 -49448743 + L1PA13 LINE L1 3593 5007 -1807 1452 186 55 0 chrY 2064841 2065115 -49448469 + AluJo SINE Alu 1 289 -23 16982 166 16 24 chrY 2065115 2066870 -49446714 + L1PA13 LINE L1 5007 6710 -104 2362 84 0 3 chrY 2066870 2067169 -49446415 + AluSq SINE Alu 1 298 -15 16982 166 16 24 chrY 2067169 2067274 -49446310 + L1PA13 LINE L1 6710 6814 0 240 369 71 74 chrY 2067946 2068353 -49445231 + L2 LINE L2 2829 3234 -38 949 183 18 0 chrY 2068913 2069082 -49444502 - AluSg/x SINE Alu -10 300 129 2054 224 22 60 chrY 2073407 2073862 -49439722 + MER92B LTR ERV1 62 490 -146 1215 64 13 0 chrY 2073862 2074019 -49439565 + L1PA3 LINE L1 5997 6155 0 2054 224 22 60 chrY 2074019 2074161 -49439423 + MER92B LTR ERV1 490 636 0 257 250 53 0 chrY 2075198 2075274 -49438310 + L1MCb LINE L1 1 80 -5965 53 17 0 0 chrY 2075274 2075334 -49438250 + AT_rich Low_complexity Low_complexity 1 60 0 361 198 66 60 chrY 2075368 2075535 -49438049 + L1MCb LINE L1 1280 1447 -5117 1207 208 72 4 chrY 2075776 2076026 -49437558 + Tigger7 DNA MER2_type 1 267 -2220 438 237 21 0 chrY 2076024 2076121 -49437463 + Tigger7 DNA MER2_type 2489 2587 0 * 296 343 20 0 chrY 2076145 2076247 -49437337 - L2 LINE L2 -243 3070 2967 925 161 0 0 chrY 2077958 2078101 -49435483 + FRAM SINE Alu 8 150 -26 1075 184 61 17 chrY 2078130 2078424 -49435160 - L1MDb LINE L1 -4402 2004 1698 6702 135 26 15 chrY 2079393 2081374 -49432210 + L1MA2 LINE L1 4314 6304 0 2449 61 3 0 chrY 2081587 2081882 -49431702 - AluY SINE Alu -15 296 1 2660 250 136 24 chrY 2083298 2084514 -49429070 - L1MDb LINE L1 -4699 1707 378 1846 291 70 10 chrY 2084549 2085133 -49428451 - L1MDb LINE L1 -5782 627 9 229 250 0 0 chrY 2085576 2085628 -49427956 + LTR30 LTR ERV1 1 52 -670 1309 113 161 2 chrY 2085628 2085870 -49427714 + LTR12 LTR ERV1 57 2017 -421 349 247 0 0 chrY 2085870 2085951 -49427633 + LTR30 LTR ERV1 544 624 -98 704 139 4 0 chrY 2085951 2086071 -49427513 + LTR12 LTR ERV1 359 714 0 1756 234 73 16 chrY 2086170 2086597 -49426987 - MER21B LTR ERV1 -69 794 344 27 0 0 0 chrY 2087536 2087563 -49426021 + AT_rich Low_complexity Low_complexity 1 27 0 1156 228 88 28 chrY 2087707 2088027 -49425557 + MLT1A1 LTR MaLR 3 341 -24 606 318 82 14 chrY 2088793 2089013 -49424571 + MIR SINE MIR 20 254 -8 1595 167 3 35 chrY 2089075 2089363 -49424221 + AluJo SINE Alu 12 290 -22 196 191 45 79 chrY 2089827 2089916 -49423668 + L2 LINE L2 3103 3188 -125 22 0 0 0 chrY 2090100 2090122 -49423462 + AT_rich Low_complexity Low_complexity 1 22 0 378 301 87 0 chrY 2090987 2091090 -49422494 + L2 LINE L2 3197 3308 -5 4471 161 62 19 chrY 2091106 2091465 -49422119 + L1MB1 LINE L1 5104 5446 -722 2235 108 0 0 chrY 2091465 2091762 -49421822 + AluSg1 SINE Alu 1 297 -12 4471 161 62 19 chrY 2091762 2091893 -49421691 + L1MB1 LINE L1 5446 5570 -598 1991 138 3 6 chrY 2091893 2092204 -49421380 - AluSq SINE Alu -3 310 1 4471 161 62 19 chrY 2092204 2092754 -49420830 + L1MB1 LINE L1 5570 6168 0 398 347 33 20 chrY 2092863 2093108 -49420476 + L3b LINE CR1 1104 1351 -232 13851 37 7 0 chrY 2093653 2096122 -49417462 + L1PA4 LINE L1 3684 6154 -1 2084 88 7 0 chrY 2096664 2096958 -49416626 - L1PA7 LINE L1 0 6154 5859 2337 83 12 0 chrY 2096958 2097282 -49416302 + L1P LINE L1 4595 4922 -1224 22 80 0 0 chrY 2097467 2097517 -49416067 + AT_rich Low_complexity Low_complexity 1 50 0 479 179 0 21 chrY 2098070 2098165 -49415419 - FLAM_A SINE Alu -36 106 14 2459 65 0 0 chrY 2098614 2098924 -49414660 + AluY SINE Alu 1 310 -1 2170 88 11 0 chrY 2099329 2099614 -49413970 + AluSx SINE Alu 1 288 -24 1933 125 14 0 chrY 2099790 2100109 -49413475 + AluSq SINE Alu 1 323 0 26 50 0 0 chrY 2100535 2100575 -49413009 + AT_rich Low_complexity Low_complexity 1 40 0 5531 130 32 3 chrY 2101173 2102925 -49410659 - L1PA15 LINE L1 0 6165 4379 3088 185 15 8 chrY 2102932 2103543 -49410041 - L1 LINE L1 -1951 4195 3581 7577 182 36 15 chrY 2103579 2105424 -49408160 - L1MA4A LINE L1 -181 6824 4913 1772 169 3 10 chrY 2105424 2105720 -49407864 + AluSx SINE Alu 5 298 -14 7577 182 36 15 chrY 2105720 2106332 -49407252 - L1MA4A LINE L1 -2092 4913 4315 1403 205 57 0 chrY 2106358 2106689 -49406895 - L1MA4A LINE L1 -4099 2750 2401 * 3005 216 43 0 chrY 2106685 2107283 -49406301 + L1M1 LINE L1 15 638 -6927 6247 163 12 3 chrY 2107324 2108895 -49404689 + L1MA3 LINE L1 4717 6305 0 918 302 4 4 chrY 2108916 2109191 -49404393 + L1PA10 LINE L1 2 276 -5599 1211 162 10 0 chrY 2109194 2109398 -49404186 - L1P LINE L1 -4219 1927 1722 880 189 71 19 chrY 2109390 2109602 -49403982 + L1PA10 LINE L1 1133 1355 -5106 * 18016 143 7 14 chrY 2109582 2113603 -49399981 + L1PA10 LINE L1 2485 6474 -9 28 0 0 0 chrY 2113603 2113631 -49399953 + AT_rich Low_complexity Low_complexity 1 28 0 345 47 0 0 chrY 2115198 2115241 -49398343 + (TG)n Simple_repeat Simple_repeat 2 44 0 5493 154 51 12 chrY 2115924 2117170 -49396414 + L1MA4A LINE L1 5005 6297 -6 748 213 11 6 chrY 2117939 2118113 -49395471 + L1MD3 LINE L1 7819 7993 -2 415 267 0 84 chrY 2118723 2118854 -49394730 - L2 LINE L2 -4 3309 3190 682 183 14 0 chrY 2118885 2119027 -49394557 - L1MA7 LINE L1 -2 6289 6146 187 276 52 17 chrY 2119880 2119938 -49393646 + MIR SINE MIR 49 108 -154 2253 198 40 12 chrY 2120627 2121121 -49392463 + L1MB7 LINE L1 5566 6073 -111 1739 168 35 35 chrY 2121121 2121491 -49392093 - THE1C LTR MaLR 0 375 6 5678 141 9 3 chrY 2121496 2122367 -49391217 - THE1C-int LTR MaLR 0 1580 705 311 115 0 39 chrY 2122373 2122425 -49391159 - THE1C LTR MaLR -324 51 2 469 194 0 0 chrY 2122425 2122523 -49391061 + L1MB7 LINE L1 6069 6166 -18 354 274 78 28 chrY 2122573 2122752 -49390832 + MIR SINE MIR 75 262 0 184 140 60 0 chrY 2122908 2122958 -49390626 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 311 243 14 0 chrY 2123252 2123322 -49390262 - L1MB1 LINE L1 -200 5989 5919 191 327 19 0 chrY 2123532 2123584 -49390000 - MIR SINE MIR -113 149 97 5800 225 44 6 chrY 2123683 2124934 -49388650 + L1PB2 LINE L1 9 1306 -6259 864 158 36 108 chrY 2124934 2125156 -49388428 + MSTA LTR MaLR 170 428 0 4769 143 24 25 chrY 2125179 2126117 -49387467 + L1PB2 LINE L1 2729 3665 -3900 9264 214 25 7 chrY 2126119 2128281 -49385303 + L1PB2 LINE L1 3863 6063 -1502 5742 112 7 6 chrY 2128251 2129116 -49384468 + L1PB2 LINE L1 6702 7567 -3 * 5684 162 71 24 chrY 2129416 2129871 -49383713 - Tigger3b DNA MER2_type -1797 1231 799 1915 171 36 13 chrY 2129871 2130264 -49383320 + L1MA5 LINE L1 5899 6300 0 5684 162 71 24 chrY 2130264 2130984 -49382600 - Tigger3b DNA MER2_type -2229 799 1 29 60 0 0 chrY 2131546 2131596 -49381988 + AT_rich Low_complexity Low_complexity 1 50 0 2099 135 3 45 chrY 2131825 2132204 -49381380 + L1PA13 LINE L1 5794 6156 -7 2337 154 3 8 chrY 2132564 2132941 -49380643 - THE1C LTR MaLR 0 375 1 9204 142 44 7 chrY 2132941 2134464 -49379120 - THE1C-int LTR MaLR 0 1580 1 2557 123 3 3 chrY 2134464 2134839 -49378745 - THE1C LTR MaLR 0 375 1 189 391 64 35 chrY 2135603 2135805 -49377779 + L2 LINE L2 2421 2628 -686 550 323 32 14 chrY 2135814 2136034 -49377550 + L3 LINE CR1 1165 1388 -189 186 43 0 0 chrY 2136223 2136246 -49377338 + (TG)n Simple_repeat Simple_repeat 2 24 0 184 316 26 44 chrY 2136494 2136608 -49376976 - MIR SINE MIR -46 216 105 225 0 0 0 chrY 2137811 2137836 -49375748 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 23974 69 4 5 chrY 2137838 2141917 -49371667 - L1PA4 LINE L1 -2 6468 2392 5435 141 8 5 chrY 2141916 2142759 -49370825 - L1PA4 LINE L1 -5615 846 1 * 9750 218 43 11 chrY 2142761 2144785 -49368799 - L1M2 LINE L1 -4669 2180 91 279 361 57 16 chrY 2144856 2144978 -49368606 - L2 LINE L2 -5 3267 3141 21 0 0 0 chrY 2145247 2145268 -49368316 + AT_rich Low_complexity Low_complexity 1 21 0 287 281 0 0 chrY 2145290 2145354 -49368230 - LTR16B LTR ERVL 0 464 401 720 292 4 4 chrY 2145356 2145620 -49367964 + L1M4 LINE L1 4478 4741 -1405 195 42 0 0 chrY 2145633 2145657 -49367927 + (TC)n Simple_repeat Simple_repeat 2 25 0 1852 216 28 28 chrY 2145660 2146202 -49367382 - MLT2A2 LTR ERVL -15 539 3 983 329 36 18 chrY 2146239 2146625 -49366959 + L1M3d LINE L1 1 393 -5498 43440 45 1 3 chrY 2146720 2152887 -49360697 + L1PA3 LINE L1 1 6155 0 189 180 0 0 chrY 2152911 2152961 -49360623 + A-rich Low_complexity Low_complexity 1 50 0 1835 177 43 0 chrY 2153815 2154166 -49359418 + MER47A DNA MER2_type 1 366 0 1464 45 0 0 chrY 2154660 2154837 -49358747 + L1PA5 LINE L1 5965 6141 -13 300 154 0 0 chrY 2154837 2154889 -49358695 + (TA)n Simple_repeat Simple_repeat 1 52 0 213 211 0 0 chrY 2157902 2157954 -49355630 + CT-rich Low_complexity Low_complexity 3 54 0 248 292 21 69 chrY 2157960 2158104 -49355480 - L2 LINE L2 -17 3296 3160 270 95 0 0 chrY 2158660 2158702 -49354882 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chrY 2158977 2159008 -49354576 + AT_rich Low_complexity Low_complexity 1 31 0 2294 126 19 25 chrY 2159593 2159959 -49353625 - THE1B LTR MaLR 0 364 1 2968 135 18 8 chrY 2160454 2160966 -49352618 - L1MA3 LINE L1 0 7724 7208 7544 125 49 9 chrY 2160966 2162648 -49350936 + MER4B-int LTR ERV1 4974 6758 0 2543 167 72 35 chrY 2162648 2163192 -49350392 + MER4B LTR ERV1 1 564 -46 3592 157 18 11 chrY 2163212 2163777 -49349807 - L1MA3 LINE L1 -498 7225 6665 1937 133 67 28 chrY 2163777 2164138 -49349446 + THE1C LTR MaLR 1 375 0 3592 157 18 11 chrY 2164138 2164427 -49349157 - L1MA3 LINE L1 -1058 6665 6360 306 0 0 0 chrY 2164427 2164461 -49349123 + (TG)n Simple_repeat Simple_repeat 1 34 0 3592 157 18 11 chrY 2164461 2164606 -49348978 - L1MA3 LINE L1 -1363 6360 6217 1909 146 30 46 chrY 2164608 2164978 -49348606 + THE1B LTR MaLR 1 364 0 10969 109 25 0 chrY 2164978 2166512 -49347072 + THE1B-int LTR MaLR 8 1580 0 1868 146 33 36 chrY 2166512 2166874 -49346710 + THE1B LTR MaLR 1 361 -3 19361 188 31 30 chrY 2166877 2167759 -49345825 - L1MA3 LINE L1 -1346 6219 5340 538 131 0 0 chrY 2167759 2167843 -49345741 - AluS SINE Alu -229 84 1 19361 188 31 30 chrY 2167843 2173087 -49340497 - L1MA3 LINE L1 -2225 5340 17 2296 149 81 0 chrY 2173106 2173502 -49340082 - MSTA LTR MaLR 0 428 1 540 374 88 38 chrY 2173724 2174471 -49339113 + L2 LINE L2 1967 2751 -563 28 22 0 22 chrY 2175350 2175371 -49338213 + AT_rich Low_complexity Low_complexity 1 21 -24 2105 96 0 47 chrY 2175371 2175507 -49338077 + AluY SINE Alu 1 142 -169 2733 7 3 10 chrY 2175507 2175815 -49337769 + AluYa5 SINE Alu 1 306 -5 2105 96 0 47 chrY 2175815 2175979 -49337605 + AluY SINE Alu 142 287 -24 28 22 0 22 chrY 2175979 2176003 -49337581 + AT_rich Low_complexity Low_complexity 21 45 0 2758 13 0 3 chrY 2176009 2176317 -49337267 - AluYa5 SINE Alu -4 307 1 368 250 50 0 chrY 2176394 2176474 -49337110 - AluJo SINE Alu -12 290 207 747 214 76 0 chrY 2176474 2176619 -49336965 - AluJo SINE Alu -154 158 3 2148 159 3 23 chrY 2176663 2177053 -49336531 - L1PA15 LINE L1 -2 6163 5782 262 278 0 0 chrY 2177054 2177144 -49336440 + L1MC4 LINE L1 6614 6703 -1339 228 269 0 21 chrY 2177086 2177179 -49336405 - L1MC4 LINE L1 -1339 6703 6613 * 1878 128 17 10 chrY 2177158 2177455 -49336129 - L1P4 LINE L1 -373 5792 5494 1010 177 0 5 chrY 2177469 2177655 -49335929 + L1PA15 LINE L1 5979 6163 -2 321 240 0 13 chrY 2177697 2177772 -49335812 + AluS SINE Alu 1 74 -228 1300 77 14 19 chrY 2177777 2177985 -49335599 - L1P4 LINE L1 -679 5486 5280 390 356 80 41 chrY 2178216 2178895 -49334689 - L2 LINE L2 -1002 2312 1608 257 280 72 57 chrY 2178919 2179112 -49334472 - L2 LINE L2 -1816 1498 1303 21 36 0 0 chrY 2179366 2179394 -49334190 + AT_rich Low_complexity Low_complexity 1 28 0 200 103 0 0 chrY 2179459 2179488 -49334096 + L2 LINE L2 3244 3272 0 1248 293 124 6 chrY 2181069 2181621 -49331963 - L2 LINE L2 0 3313 2708 15108 153 16 15 chrY 2181997 2184581 -49329003 - Tigger2 DNA MER2_type -130 2588 1 347 259 129 70 chrY 2185253 2185454 -49328130 + MIR SINE MIR 2 214 -48 21 0 0 0 chrY 2185636 2185657 -49327927 + AT_rich Low_complexity Low_complexity 1 21 0 2100 104 7 0 chrY 2185798 2186085 -49327499 - AluSp SINE Alu 0 313 25 2352 129 13 11 chrY 2186125 2186497 -49327087 + THE1C LTR MaLR 1 373 -2 217 222 0 0 chrY 2186644 2186689 -49326895 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 180 274 123 27 chrY 2187070 2187143 -49326441 + L2 LINE L2 3229 3308 -5 21 0 0 0 chrY 2187269 2187290 -49326294 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrY 2188944 2188985 -49324599 + (CA)n Simple_repeat Simple_repeat 2 42 0 720 240 37 70 chrY 2189287 2189529 -49324055 + MER21B LTR ERV1 1 234 -629 1596 245 34 32 chrY 2189567 2190004 -49323580 + MER21B LTR ERV1 321 758 -105 2269 85 0 52 chrY 2190202 2190530 -49323054 + AluSp SINE Alu 3 313 0 2030 158 31 6 chrY 2190893 2191248 -49322336 + THE1B LTR MaLR 1 364 0 4351 40 3 42 chrY 2191918 2192493 -49321091 + L1PA5 LINE L1 5602 6154 0 180 77 0 0 chrY 2193500 2193526 -49320058 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 16490 36 38 1 chrY 2193526 2196330 -49317254 - L1PA4 LINE L1 -16 6139 3229 2503 120 5 8 chrY 2196610 2196986 -49316598 - THE1C LTR MaLR 0 375 1 673 146 8 32 chrY 2196990 2197113 -49316471 - THE1-int LTR MaLR -387 1193 1074 1371 100 5 11 chrY 2197119 2197309 -49316275 - THE1C LTR MaLR -186 189 1 2203 148 14 0 chrY 2197313 2197658 -49315926 - THE1-int LTR MaLR -387 1193 844 205 264 216 16 chrY 2197993 2198118 -49315466 - MIR SINE MIR 0 262 113 22 35 0 0 chrY 2198314 2198343 -49315241 + AT_rich Low_complexity Low_complexity 1 29 0 1380 24 12 0 chrY 2198371 2198537 -49315047 + L1PA3 LINE L1 5985 6152 -3 368 312 40 0 chrY 2199009 2199134 -49314450 - MIR SINE MIR -4 258 129 26 0 0 0 chrY 2199956 2199982 -49313602 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chrY 2200930 2200976 -49312608 + AT_rich Low_complexity Low_complexity 1 46 0 1997 144 36 36 chrY 2201066 2201428 -49312156 - THE1B LTR MaLR -2 362 1 25 51 0 0 chrY 2201448 2201487 -49312097 + AT_rich Low_complexity Low_complexity 1 39 0 237 280 9 56 chrY 2202264 2202371 -49311213 + MIR SINE MIR 100 201 -61 24 32 0 0 chrY 2203455 2203486 -49310098 + AT_rich Low_complexity Low_complexity 1 31 0 281 204 11 11 chrY 2203537 2203647 -49309937 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 28 71 0 0 chrY 2203648 2203704 -49309880 + AT_rich Low_complexity Low_complexity 1 56 0 18210 202 15 14 chrY 2203749 2206313 -49307271 + L1PA16 LINE L1 2 2563 -4306 2499 61 0 3 chrY 2206313 2206608 -49306976 - AluY SINE Alu -17 294 1 18210 202 15 14 chrY 2206608 2207037 -49306547 + L1PA16 LINE L1 2563 2990 -3879 609 27 0 0 chrY 2207037 2207111 -49306473 + L1PA5 LINE L1 6076 6149 -5 18210 202 15 14 chrY 2207111 2207168 -49306416 + L1PA16 LINE L1 2990 3045 -3824 2286 110 0 16 chrY 2207168 2207486 -49306098 - AluSq SINE Alu 0 313 1 18210 202 15 14 chrY 2207486 2211283 -49302301 + L1PA16 LINE L1 3045 6860 -9 4291 135 27 10 chrY 2212297 2213008 -49300576 - Tigger1 DNA MER2_type 0 2418 1696 5351 159 41 21 chrY 2213023 2214016 -49299568 - Tigger1 DNA MER2_type -1405 1013 1 275 333 22 0 chrY 2214016 2214106 -49299478 - MIR SINE MIR -64 198 107 4940 142 14 10 chrY 2214163 2216067 -49297517 - L1PA15 LINE L1 0 6816 4884 9233 254 34 29 chrY 2216067 2219559 -49294025 - L1PA15 LINE L1 -3276 3521 3 207 0 0 0 chrY 2219571 2219594 -49293990 + (A)n Simple_repeat Simple_repeat 1 23 0 1293 201 109 10 chrY 2219599 2219912 -49293672 + MER2 DNA MER2_type 1 344 0 509 216 43 0 chrY 2220643 2220759 -49292825 - MIR SINE MIR -16 246 126 21 0 0 0 chrY 2220886 2220907 -49292677 + AT_rich Low_complexity Low_complexity 1 21 0 181 245 204 41 chrY 2221124 2221222 -49292362 + L2 LINE L2 2566 2679 -635 200 116 23 23 chrY 2221258 2221301 -49292283 + L2 LINE L2 3266 3308 -5 2016 98 0 0 chrY 2221920 2222195 -49291389 + L1P3 LINE L1 4 278 -6183 5545 74 0 8 chrY 2222195 2222934 -49290650 + L1PA8 LINE L1 5434 6166 -6 5579 162 16 2 chrY 2222938 2224075 -49289509 + L1MA4A LINE L1 5144 6296 -7 4033 200 24 72 chrY 2224104 2225039 -49288545 + L1MB3 LINE L1 4614 5423 -760 2320 231 60 50 chrY 2225039 2225720 -49287864 + MER76 LTR ERV 1 688 0 4033 200 24 72 chrY 2225720 2226445 -49287139 + L1MB3 LINE L1 5423 6181 -2 23 33 0 0 chrY 2226498 2226528 -49287056 + AT_rich Low_complexity Low_complexity 1 30 0 752 266 12 8 chrY 2226583 2226824 -49286760 + L1 LINE L1 4452 4693 -1453 351 221 53 0 chrY 2226823 2226918 -49286666 + L1 LINE L1 4422 4521 -1625 * 842 298 24 60 chrY 2226985 2227398 -49286186 - MLT1I LTR MaLR 0 409 12 880 240 38 116 chrY 2227440 2227836 -49285748 - MLT1A1 LTR MaLR 0 365 1 190 307 175 9 chrY 2227852 2227966 -49285618 - MIR SINE MIR -49 213 81 42729 31 22 1 chrY 2229276 2235301 -49278283 - L1HS LINE L1 0 6155 4 3088 149 39 8 chrY 2235301 2235877 -49277707 - MER4B LTR ERV1 -20 759 1 190 308 65 56 chrY 2236258 2236365 -49277219 - L2 LINE L2 -158 3114 3007 27 29 0 0 chrY 2237426 2237460 -49276124 + AT_rich Low_complexity Low_complexity 1 34 0 192 286 41 0 chrY 2237915 2237964 -49275620 - L2 LINE L2 -3 3269 3219 29 0 0 0 chrY 2238410 2238439 -49275145 + AT_rich Low_complexity Low_complexity 1 29 0 40 67 0 0 chrY 2238533 2238608 -49274976 + AT_rich Low_complexity Low_complexity 1 75 0 23 78 0 0 chrY 2238642 2238693 -49274891 + AT_rich Low_complexity Low_complexity 1 51 0 396 0 0 0 chrY 2238722 2238766 -49274818 + (TA)n Simple_repeat Simple_repeat 1 44 0 284 288 161 8 chrY 2239376 2239494 -49274090 - MIR SINE MIR 0 262 127 1969 111 0 0 chrY 2240488 2240749 -49272835 - AluSx SINE Alu -10 302 42 4285 118 46 1 chrY 2240888 2241651 -49271933 + L1PBa LINE L1 1614 2410 -4453 14990 177 26 33 chrY 2241657 2241756 -49271828 - L1M1 LINE L1 -4462 3103 3005 1512 141 0 8 chrY 2241756 2241990 -49271594 - AluSg/x SINE Alu 0 310 79 14990 177 26 33 chrY 2241990 2242734 -49270850 - L1M1 LINE L1 -4560 3005 2257 2257 67 3 18 chrY 2242734 2243018 -49270566 - AluY SINE Alu -15 296 17 14990 177 26 33 chrY 2243018 2245291 -49268293 - L1M1 LINE L1 -5308 2257 8 306 269 186 14 chrY 2245469 2245614 -49267970 + MER5A DNA MER1_type 9 178 -11 843 227 152 28 chrY 2245896 2246218 -49267366 + MLT1D LTR MaLR 127 488 -17 201 208 0 21 chrY 2246325 2246373 -49267211 + (TAA)n Simple_repeat Simple_repeat 2 48 0 210 37 0 0 chrY 2246567 2246594 -49266990 + (A)n Simple_repeat Simple_repeat 1 27 0 257 264 109 9 chrY 2246710 2246820 -49266764 + L2 LINE L2 2933 3053 -219 830 282 53 8 chrY 2247122 2247367 -49266217 - MIR SINE MIR 0 262 7 242 270 217 26 chrY 2247903 2248018 -49265566 + MIR3 SINE MIR 20 156 -52 1361 36 0 6 chrY 2249723 2249889 -49263695 - L1PA4 LINE L1 -8 6147 5983 249 98 0 0 chrY 2250348 2250389 -49263195 + (GA)n Simple_repeat Simple_repeat 2 42 0 239 352 11 0 chrY 2251586 2251674 -49261910 - MIR3 SINE MIR -17 191 103 536 248 163 33 chrY 2251686 2251839 -49261745 + MER5A DNA MER1_type 16 188 -1 1113 163 28 23 chrY 2252494 2252709 -49260875 + MER20 DNA MER1_type 3 218 -1 41780 40 1 2 chrY 2253601 2259760 -49253824 + L1PA3 LINE L1 2 6155 0 345 47 0 0 chrY 2260673 2260716 -49252868 + (TA)n Simple_repeat Simple_repeat 2 44 0 2714 26 0 3 chrY 2260896 2261207 -49252377 - AluY SINE Alu -1 310 1 2208 212 47 21 chrY 2262007 2262540 -49251044 - MLT1E2 LTR MaLR 0 626 80 264 314 12 12 chrY 2262498 2262584 -49251000 - MLT2D LTR ERVL -289 125 41 * 241 333 39 0 chrY 2262684 2262762 -49250822 - MER91A DNA MER1_type -115 81 1 266 374 123 19 chrY 2263846 2264001 -49249583 + MIR3 SINE MIR 5 175 -33 296 307 68 43 chrY 2264121 2264305 -49249279 + MIR3 SINE MIR 33 216 -31 256 245 18 25 chrY 2264377 2264472 -49249112 + MIR3 SINE MIR 66 160 -48 204 40 0 0 chrY 2265526 2265551 -49248033 + (TA)n Simple_repeat Simple_repeat 1 25 0 2411 145 27 44 chrY 2265741 2266363 -49247221 + MER4B LTR ERV1 3 779 0 968 210 48 117 chrY 2266692 2267274 -49246310 + MER34 LTR ERV1 1 542 0 298 253 23 0 chrY 2267834 2267921 -49245663 + MER103 DNA DNA 22 110 -56 3853 137 16 3 chrY 2268857 2269484 -49244100 - MER41B LTR ERV1 0 635 1 786 208 74 0 chrY 2270488 2270719 -49242865 - MER69 DNA AcHobo -1 2525 2278 458 217 0 0 chrY 2270726 2270818 -49242766 - Tigger7 DNA MER2_type -29 2558 2467 384 165 13 0 chrY 2270809 2270888 -49242696 - MER69 DNA AcHobo -235 2291 2212 * 436 187 0 0 chrY 2270888 2270963 -49242621 - MER69 DNA AcHobo -2450 76 2 201 184 41 0 chrY 2271375 2271424 -49242160 + L2 LINE L2 3263 3313 0 273 352 95 11 chrY 2271563 2271742 -49241842 - MIR SINE MIR -34 228 35 486 333 27 31 chrY 2275962 2276087 -49237497 - MIR SINE MIR -29 233 109 979 171 114 30 chrY 2276087 2276247 -49237337 - MER33 DNA MER1_type -2261 324 179 204 40 0 0 chrY 2276247 2276272 -49237312 + (TTATA)n Simple_repeat Simple_repeat 5 29 0 1598 216 3 0 chrY 2276273 2276556 -49237028 - AluJo SINE Alu -28 284 1 979 171 114 30 chrY 2276556 2276572 -49237012 - MER33 DNA MER1_type -2406 179 166 297 51 0 0 chrY 2276572 2276611 -49236973 + (TG)n Simple_repeat Simple_repeat 1 39 0 979 171 114 30 chrY 2276611 2276730 -49236854 - MER33 DNA MER1_type -2419 166 1 486 333 27 31 chrY 2276730 2276826 -49236758 - MIR SINE MIR -153 109 13 364 236 157 39 chrY 2277763 2277941 -49235643 + MIR SINE MIR 49 247 -15 378 331 27 14 chrY 2278342 2278490 -49235094 + MIR SINE MIR 47 196 -66 312 279 49 103 chrY 2279633 2279837 -49233747 + L1M2 LINE L1 821 1013 -5836 342 0 0 0 chrY 2279877 2279915 -49233669 + (CA)n Simple_repeat Simple_repeat 1 38 0 276 111 0 0 chrY 2282916 2282961 -49230623 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chrY 2284754 2284776 -49228808 + AT_rich Low_complexity Low_complexity 1 22 0 321 302 26 17 chrY 2285127 2285243 -49228341 - L2 LINE L2 -10 3303 3187 23 54 0 0 chrY 2287988 2288025 -49225559 + AT_rich Low_complexity Low_complexity 1 37 0 380 253 44 0 chrY 2288878 2288969 -49224615 + MIR3 SINE MIR 86 180 -28 186 244 12 85 chrY 2289168 2289250 -49224334 - L2 LINE L2 -97 3216 3141 432 219 10 0 chrY 2289310 2289406 -49224178 - MIR3 SINE MIR -11 197 101 24 0 0 0 chrY 2289771 2289795 -49223789 + AT_rich Low_complexity Low_complexity 1 24 0 2311 83 0 13 chrY 2290285 2290598 -49222986 + AluSc SINE Alu 1 309 0 436 264 189 7 chrY 2291219 2291367 -49222217 - MER5A DNA MER1_type -2 187 13 2253 117 117 5 chrY 2292573 2292958 -49220626 - MSTA LTR MaLR 0 428 1 198 0 0 0 chrY 2293031 2293053 -49220531 + (T)n Simple_repeat Simple_repeat 1 22 0 2339 39 42 0 chrY 2293214 2293499 -49220085 - AluY SINE Alu -14 297 1 305 280 48 32 chrY 2294463 2294588 -49218996 - MIR SINE MIR -71 191 65 25 65 0 0 chrY 2294680 2294726 -49218858 + AT_rich Low_complexity Low_complexity 1 46 0 188 260 27 82 chrY 2295613 2295686 -49217898 - MIR SINE MIR -67 141 73 2198 120 22 33 chrY 2296111 2296479 -49217105 + THE1B LTR MaLR 1 364 0 332 184 81 14 chrY 2296626 2296724 -49216860 - MIR SINE MIR -100 108 1 254 329 128 34 chrY 2298136 2298285 -49215299 - MIR SINE MIR -91 171 9 23 86 0 0 chrY 2298286 2298344 -49215240 + AT_rich Low_complexity Low_complexity 1 58 0 1434 91 0 0 chrY 2299438 2299625 -49213959 + U2 snRNA snRNA 1 187 -1 2480 80 0 0 chrY 2299652 2299963 -49213621 + AluSx SINE Alu 1 311 -1 29 84 0 0 chrY 2300275 2300346 -49213238 + AT_rich Low_complexity Low_complexity 1 71 0 1955 122 0 14 chrY 2301604 2301900 -49211684 + AluSx SINE Alu 1 292 -20 1808 145 17 7 chrY 2302704 2303000 -49210584 + AluJb SINE Alu 2 300 -12 344 208 14 0 chrY 2304492 2304564 -49209020 - MER116 DNA Mariner -4 76 4 241 121 0 0 chrY 2304747 2304780 -49208804 + U2 snRNA snRNA 1 33 -155 655 322 89 13 chrY 2305317 2305553 -49208031 + MIR SINE MIR 9 262 0 26 30 0 0 chrY 2306178 2306211 -49207373 + AT_rich Low_complexity Low_complexity 1 33 0 1429 199 0 37 chrY 2307339 2307635 -49205949 + AluJo SINE Alu 1 285 -27 1550 191 0 16 chrY 2308851 2309155 -49204429 + AluJo SINE Alu 1 299 -13 23 0 0 0 chrY 2309803 2309826 -49203758 + AT_rich Low_complexity Low_complexity 1 23 0 2357 90 0 0 chrY 2310005 2310305 -49203279 + AluSg SINE Alu 1 300 -10 1056 148 64 35 chrY 2311396 2311599 -49201985 - MER3 DNA MER1_type 0 209 1 26 0 0 0 chrY 2313928 2313954 -49199630 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrY 2315988 2316012 -49197572 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chrY 2316150 2316180 -49197404 + AT_rich Low_complexity Low_complexity 1 30 0 430 277 37 41 chrY 2316507 2316665 -49196919 - MIR3 SINE MIR -9 199 41 901 223 59 25 chrY 2316778 2316980 -49196604 - MIR SINE MIR -31 231 23 24 0 0 0 chrY 2316988 2317012 -49196572 + AT_rich Low_complexity Low_complexity 1 24 0 2013 90 0 0 chrY 2317676 2317931 -49195653 + AluSx SINE Alu 28 282 -30 722 253 56 5 chrY 2319326 2319524 -49194060 + MER3 DNA MER1_type 2 209 0 2147 92 20 14 chrY 2320220 2320514 -49193070 + AluY SINE Alu 3 298 -13 22 0 0 0 chrY 2321133 2321155 -49192429 + AT_rich Low_complexity Low_complexity 1 22 0 192 158 0 0 chrY 2321429 2321467 -49192117 + T-rich Low_complexity Low_complexity 1 38 0 42404 37 21 1 chrY 2321470 2327502 -49186082 - L1PA3 LINE L1 0 6155 1 5729 119 35 3 chrY 2328262 2329869 -49183715 - L1PA14 LINE L1 -2 6159 4522 2067 58 0 4 chrY 2329920 2330179 -49183405 - AluY SINE Alu -9 302 45 23 0 0 0 chrY 2331527 2331550 -49182034 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 2333385 2333413 -49180171 + AT_rich Low_complexity Low_complexity 1 28 0 464 233 0 0 chrY 2333566 2333652 -49179932 + L2 LINE L2 3225 3310 -3 4880 40 0 5 chrY 2333850 2334443 -49179141 + L1PA5 LINE L1 5565 6154 0 1779 68 24 8 chrY 2334637 2334886 -49178698 - L1PA13 LINE L1 0 6163 5911 316 343 98 63 chrY 2336339 2336768 -49176816 - L3 LINE CR1 -2 1575 1132 21 0 0 0 chrY 2336919 2336940 -49176644 + AT_rich Low_complexity Low_complexity 1 21 0 685 81 0 10 chrY 2339077 2339176 -49174408 + L1M1 LINE L1 5505 5602 -700 213 362 76 19 chrY 2339260 2339365 -49174219 + MIR SINE MIR 36 146 -62 608 211 113 36 chrY 2339538 2339732 -49173852 + MER3 DNA MER1_type 1 209 0 300 357 18 9 chrY 2340898 2341010 -49172574 - MIR SINE MIR -65 143 31 1768 114 81 44 chrY 2341103 2341401 -49172183 + AluSx SINE Alu 3 311 -1 315 0 0 0 chrY 2345029 2345064 -49168520 + (TG)n Simple_repeat Simple_repeat 2 36 0 1797 154 10 35 chrY 2345067 2345379 -49168205 - AluSx SINE Alu -8 304 1 216 0 0 0 chrY 2346063 2346087 -49167497 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrY 2346402 2346433 -49167151 + AT_rich Low_complexity Low_complexity 1 31 0 2479 52 0 3 chrY 2348093 2348401 -49165183 + AluY SINE Alu 1 307 -4 333 0 0 0 chrY 2348905 2348942 -49164642 + (TG)n Simple_repeat Simple_repeat 2 38 0 820 215 0 0 chrY 2348947 2349105 -49164479 - FAM SINE Alu -17 158 1 1067 97 13 13 chrY 2349973 2350128 -49163456 - AluY SINE Alu -4 307 153 1275 132 4 22 chrY 2351058 2351285 -49162299 - L1PA14 LINE L1 -1 6160 5938 27 29 0 0 chrY 2353004 2353038 -49160546 + AT_rich Low_complexity Low_complexity 1 34 0 758 100 0 0 chrY 2353255 2353365 -49160219 - L1MA3 LINE L1 0 6305 6196 2419 76 0 3 chrY 2353797 2354100 -49159484 - AluSq SINE Alu -11 302 1 941 204 5 46 chrY 2354404 2354600 -49158984 - MER20 DNA MER1_type -1 218 31 9038 150 13 5 chrY 2355643 2358247 -49155337 - L1MA2 LINE L1 0 7723 5098 12382 136 11 13 chrY 2358250 2358789 -49154795 - L1PA10 LINE L1 -16 6152 5613 2368 111 17 14 chrY 2358789 2359150 -49154434 - THE1B LTR MaLR 0 364 3 10048 122 14 30 chrY 2359152 2360759 -49152825 - THE1B-int LTR MaLR 0 1580 1 12382 136 11 13 chrY 2360759 2363118 -49150466 - L1PA10 LINE L1 -556 5612 3279 1393 267 38 45 chrY 2363120 2363799 -49149785 - L1P3 LINE L1 -5088 787 2 14270 188 30 15 chrY 2363824 2366142 -49147442 - L1MA2 LINE L1 -2449 5116 2834 297 0 0 0 chrY 2366142 2366175 -49147409 + (TG)n Simple_repeat Simple_repeat 2 34 0 14270 188 30 15 chrY 2366175 2368594 -49144990 - L1MA2 LINE L1 -4731 2834 15 558 351 12 0 chrY 2371140 2371308 -49142276 + MIR3 SINE MIR 30 199 -9 190 315 0 19 chrY 2374230 2374284 -49139300 - L2 LINE L2 0 3272 3220 780 237 9 24 chrY 2374976 2375187 -49138397 + MER3 DNA MER1_type 2 209 0 345 47 0 0 chrY 2376796 2376839 -49136745 + (TG)n Simple_repeat Simple_repeat 2 44 0 2393 50 3 31 chrY 2377055 2377375 -49136209 - AluY SINE Alu 0 311 1 186 103 0 0 chrY 2377507 2377536 -49136048 + (A)n Simple_repeat Simple_repeat 1 29 0 1547 133 0 27 chrY 2377913 2378176 -49135408 + L1PB1 LINE L1 5895 6150 -1 378 335 73 43 chrY 2378255 2378419 -49135165 - MIR3 SINE MIR -10 198 30 38 39 0 0 chrY 2378490 2378542 -49135042 + AT_rich Low_complexity Low_complexity 1 52 0 183 80 0 0 chrY 2380637 2380662 -49132922 + (GAA)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chrY 2383244 2383277 -49130307 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 2384154 2384175 -49129409 + AT_rich Low_complexity Low_complexity 1 21 0 2510 44 0 0 chrY 2385323 2385617 -49127967 + AluY SINE Alu 1 294 -17 2446 80 0 3 chrY 2385707 2386020 -49127564 + AluSx SINE Alu 1 312 0 2630 36 0 0 chrY 2388140 2388447 -49125137 + AluY SINE Alu 1 307 -4 22 115 0 0 chrY 2388627 2388740 -49124844 + AT_rich Low_complexity Low_complexity 1 113 0 2586 51 0 0 chrY 2388828 2389139 -49124445 + AluY SINE Alu 1 311 0 1675 157 0 33 chrY 2390512 2390811 -49122773 + AluSx SINE Alu 1 289 -23 24 0 0 0 chrY 2390811 2390835 -49122749 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chrY 2391341 2391368 -49122216 + AT_rich Low_complexity Low_complexity 1 27 0 2006 112 22 0 chrY 2391458 2391760 -49121824 - AluSx SINE Alu 0 308 1 21 36 0 0 chrY 2392835 2392863 -49120721 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chrY 2394080 2394105 -49119479 + (A)n Simple_repeat Simple_repeat 1 25 0 252 0 0 0 chrY 2394160 2394188 -49119396 + (TG)n Simple_repeat Simple_repeat 2 29 0 232 348 135 23 chrY 2394268 2394711 -49118873 + L2 LINE L2 2438 2930 -384 918 54 0 0 chrY 2394845 2394957 -49118627 - AluSx SINE Alu -7 303 192 981 100 0 7 chrY 2394960 2395100 -49118484 - AluSx SINE Alu -174 139 1 756 21 0 0 chrY 2395496 2395589 -49117995 - AluY SINE Alu -2 309 217 2676 26 0 0 chrY 2396096 2396402 -49117182 - AluY SINE Alu -5 306 1 421 182 64 11 chrY 2398180 2398460 -49115124 + (TA)n Simple_repeat Simple_repeat 1 295 0 1573 167 28 24 chrY 2398603 2398890 -49114694 - AluJb SINE Alu -24 288 1 346 218 10 89 chrY 2399014 2399115 -49114469 - MIR3 SINE MIR -18 190 98 217 329 38 0 chrY 2399103 2399182 -49114402 - MIR SINE MIR -3 259 178 * 266 241 0 0 chrY 2400334 2400392 -49113192 - L2 LINE L2 -4 3268 3211 230 350 160 5 chrY 2400423 2400617 -49112967 + MIR SINE MIR 28 251 -11 306 243 90 36 chrY 2400626 2400737 -49112847 - MIR SINE MIR -56 206 90 250 365 39 10 chrY 2401056 2401160 -49112424 - MIR SINE MIR -72 136 30 294 266 40 65 chrY 2401279 2401403 -49112181 + MIR SINE MIR 30 150 -112 2206 149 61 28 chrY 2401490 2401994 -49111590 - MLT2A2 LTR ERVL -8 546 5 7340 97 10 5 chrY 2401998 2403061 -49110523 - HERVL-A2 LTR ERVL 0 5654 4545 367 351 34 13 chrY 2403465 2403681 -49109903 + MIR SINE MIR 18 241 -21 248 333 46 32 chrY 2403699 2403889 -49109695 - MIR SINE MIR -66 196 5 23 0 0 0 chrY 2404219 2404242 -49109342 + AT_rich Low_complexity Low_complexity 1 23 0 698 339 86 29 chrY 2404668 2405368 -49108216 + L2 LINE L2 1806 2545 -769 443 325 110 18 chrY 2405374 2405602 -49107982 - MIR SINE MIR 0 262 14 387 382 27 23 chrY 2405622 2405881 -49107703 + L2 LINE L2 2560 2819 -495 198 209 0 0 chrY 2406102 2406145 -49107439 + (TG)n Simple_repeat Simple_repeat 2 44 0 488 81 0 70 chrY 2406630 2406716 -49106868 - MADE1 DNA Mariner 0 80 1 546 222 25 49 chrY 2406953 2407115 -49106469 - L1ME4a LINE L1 -4 6117 5960 433 267 74 11 chrY 2407118 2407294 -49106290 - L1ME4a LINE L1 -264 5857 5671 1187 189 0 5 chrY 2407528 2407781 -49105803 - AluJb SINE Alu 0 312 89 298 325 162 7 chrY 2408886 2409040 -49104544 - MER5B DNA MER1_type 0 178 1 192 40 0 0 chrY 2409211 2409236 -49104348 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 315 49 0 0 chrY 2409801 2409842 -49103742 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrY 2409841 2409873 -49103711 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 25 51 0 0 chrY 2409879 2409918 -49103666 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chrY 2409949 2409982 -49103602 + AT_rich Low_complexity Low_complexity 1 33 0 3146 89 2 0 chrY 2410062 2410501 -49103083 - L1PA13 LINE L1 -7 6156 5717 2768 124 2 47 chrY 2410501 2410962 -49102622 + L1P4 LINE L1 5041 5471 -697 2034 119 3 3 chrY 2410962 2411256 -49102328 + AluSx SINE Alu 1 294 -18 2768 124 2 47 chrY 2411256 2411462 -49102122 + L1P4 LINE L1 5471 5685 -483 23 0 0 0 chrY 2412026 2412049 -49101535 + AT_rich Low_complexity Low_complexity 1 23 0 1402 94 70 4 chrY 2412207 2412451 -49101133 - L1MA9 LINE L1 0 6312 6053 2540 118 5 19 chrY 2413750 2414173 -49099411 - L1MA3 LINE L1 0 6305 5889 4536 176 27 8 chrY 2414173 2415088 -49098496 - L1 LINE L1 -1445 4701 3769 14240 204 21 9 chrY 2415110 2420438 -49093146 + L1PBa LINE L1 1 5531 -1331 688 188 30 0 chrY 2420532 2420665 -49092919 - MLT1E2 LTR MaLR 0 626 490 6018 14 1 0 chrY 2421208 2421898 -49091686 - L1HS LINE L1 0 6155 5465 5313 19 10 0 chrY 2421888 2422621 -49090963 + L1P1 LINE L1 4753 5489 -666 * 4459 136 26 11 chrY 2425007 2425771 -49087813 - L1MC1 LINE L1 0 6333 5558 662 269 151 9 chrY 2426035 2426247 -49087337 - MIR SINE MIR 0 262 21 1903 125 33 111 chrY 2426289 2426657 -49086927 + Charlie3 DNA MER1_type 1 2712 0 902 107 23 0 chrY 2426946 2427077 -49086507 + HERVL-A2 LTR ERVL 5520 5653 -1 2077 160 49 31 chrY 2427078 2427621 -49085963 + MLT2A2 LTR ERVL 1 554 0 1865 100 55 17 chrY 2427626 2427916 -49085668 + L1PA16 LINE L1 5864 6164 -2 1590 239 100 28 chrY 2427938 2428399 -49085185 + MLT1D LTR MaLR 12 505 0 1964 163 22 8 chrY 2428938 2429299 -49084285 - MER47A DNA MER2_type 0 366 1 1182 241 14 58 chrY 2429871 2429924 -49083660 - MLT2D LTR ERVL 0 414 360 408 20 0 0 chrY 2429924 2429973 -49083611 + (CA)n Simple_repeat Simple_repeat 2 50 0 1182 241 14 58 chrY 2429973 2430267 -49083317 - MLT2D LTR ERVL -54 360 82 2095 143 40 3 chrY 2430546 2430923 -49082661 - L1MA5A LINE L1 -5 6292 5902 900 274 46 0 chrY 2431158 2431377 -49082207 - MIR SINE MIR -29 233 5 306 243 97 29 chrY 2431441 2431544 -49082040 - MIR3 SINE MIR -5 203 94 22 88 0 0 chrY 2432931 2432988 -49080596 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chrY 2433094 2433136 -49080448 + AT_rich Low_complexity Low_complexity 1 42 0 723 274 104 9 chrY 2433192 2433422 -49080162 - MIR SINE MIR -9 253 2 347 155 0 14 chrY 2434359 2434430 -49079154 + (TA)n Simple_repeat Simple_repeat 2 71 0 311 65 22 0 chrY 2434989 2435035 -49078549 + (TG)n Simple_repeat Simple_repeat 1 47 0 433 329 128 9 chrY 2435243 2435462 -49078122 + L3 LINE CR1 1331 1575 -2 2400 108 13 13 chrY 2435670 2436049 -49077535 - L1PA11 LINE L1 -3 6171 5793 358 321 9 32 chrY 2436185 2436483 -49077101 + GA-rich Low_complexity Low_complexity 1 291 0 296 111 19 0 chrY 2436502 2436556 -49077028 + (TG)n Simple_repeat Simple_repeat 1 55 0 3118 147 66 9 chrY 2439440 2440017 -49073567 - MER4B LTR ERV1 0 610 1 491 0 17 0 chrY 2440387 2440446 -49073138 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 41 72 0 0 chrY 2440737 2440820 -49072764 + AT_rich Low_complexity Low_complexity 1 83 0 4754 257 62 56 chrY 2442083 2443825 -49069759 + L1MEc LINE L1 22 1751 -4645 1984 153 110 15 chrY 2443825 2444216 -49069368 + MSTA LTR MaLR 1 428 0 4754 257 62 56 chrY 2444216 2444406 -49069178 + L1MEc LINE L1 1751 1938 -4458 1455 194 25 18 chrY 2444406 2444689 -49068895 - AluJb SINE Alu -25 287 3 4754 257 62 56 chrY 2444689 2444866 -49068718 + L1MEc LINE L1 1938 2146 -4250 777 109 0 0 chrY 2444868 2444978 -49068606 + L1MA1 LINE L1 6099 6208 -94 4558 262 44 39 chrY 2444980 2446768 -49066816 + L1MEc LINE L1 2153 3910 -2305 3114 121 32 26 chrY 2446768 2447299 -49066285 + L1MC1 LINE L1 5798 6331 -2 4558 262 44 39 chrY 2447299 2447546 -49066038 + L1MEc LINE L1 3910 4154 -2061 405 0 0 0 chrY 2447880 2447925 -49065659 + (TG)n Simple_repeat Simple_repeat 2 46 0 486 0 0 0 chrY 2448905 2448959 -49064625 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 33 0 0 chrY 2449554 2449584 -49064000 + AT_rich Low_complexity Low_complexity 1 30 0 354 297 54 9 chrY 2450025 2450136 -49063448 - MIR SINE MIR -76 186 71 23 54 0 0 chrY 2450197 2450234 -49063350 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrY 2450527 2450548 -49063036 + AT_rich Low_complexity Low_complexity 1 21 0 1663 175 83 65 chrY 2452454 2452912 -49060672 - MER31B LTR ERV1 0 466 1 291 352 82 0 chrY 2453407 2453566 -49060018 + MIR3 SINE MIR 32 203 -5 2436 119 13 11 chrY 2454071 2454449 -49059135 - L1PB3 LINE L1 0 6154 5776 439 68 0 27 chrY 2454463 2454537 -49059047 + (TA)n Simple_repeat Simple_repeat 1 72 0 597 76 0 0 chrY 2454544 2454623 -49058961 - L1PB3 LINE L1 -366 5788 5710 382 250 76 0 chrY 2454670 2454762 -49058822 + L2 LINE L2 3179 3277 -36 7910 17 0 0 chrY 2455736 2456826 -49056758 - L1HS LINE L1 0 6155 5066 4880 102 20 12 chrY 2457609 2458360 -49055224 + L1MA1 LINE L1 5542 6298 -4 6185 102 12 1 chrY 2458975 2460433 -49053151 - L1PA11 LINE L1 0 6174 4705 9914 228 22 15 chrY 2460437 2463804 -49049780 - L1PA12 LINE L1 -3121 4463 9 4399 174 72 31 chrY 2464168 2464694 -49048890 - L1MA9 LINE L1 0 6312 5809 225 0 0 0 chrY 2464694 2464719 -49048865 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4399 174 72 31 chrY 2464719 2465433 -49048151 - L1MA9 LINE L1 -503 5809 5005 2082 136 3 0 chrY 2465433 2465741 -49047843 - AluSx SINE Alu -3 309 1 4399 174 72 31 chrY 2465741 2466057 -49047527 - L1MA9 LINE L1 -1307 5005 4703 4793 180 39 8 chrY 2466058 2466725 -49046859 + L1 LINE L1 3695 4340 -1806 2632 95 16 3 chrY 2466725 2467094 -49046490 - THE1C LTR MaLR -1 374 1 9654 142 11 32 chrY 2467094 2468708 -49044876 - THE1C-int LTR MaLR 0 1580 1 2635 117 0 3 chrY 2468708 2469084 -49044500 - THE1C LTR MaLR 0 375 1 4793 180 39 8 chrY 2469084 2469387 -49044197 + L1 LINE L1 4339 4697 -1449 2342 174 33 31 chrY 2470869 2471323 -49042261 - LOR1b LTR ERV1 -6 455 1 1769 58 8 8 chrY 2471439 2471679 -49041905 + L1PA6 LINE L1 5912 6151 -3 22 0 0 0 chrY 2471753 2471775 -49041809 + AT_rich Low_complexity Low_complexity 1 22 0 2260 90 0 27 chrY 2471822 2472156 -49041428 - L1PA8 LINE L1 0 6172 5848 2077 111 17 54 chrY 2472272 2472622 -49040962 + MER1B DNA MER1_type 1 337 0 215 284 136 0 chrY 2472927 2473015 -49040569 - MIR SINE MIR -111 151 52 224 360 61 0 chrY 2473420 2473534 -49040050 - MIR SINE MIR -67 141 21 1763 166 13 3 chrY 2474517 2474824 -49038760 + AluJo SINE Alu 2 311 -1 398 277 51 0 chrY 2474841 2474978 -49038606 + MIR SINE MIR 10 153 -109 704 139 61 0 chrY 2474978 2475093 -49038491 - LTR12 LTR ERV1 -234 480 359 350 210 0 0 chrY 2475093 2475174 -49038410 - LTR30 LTR ERV1 -98 624 544 1675 71 6 166 chrY 2475177 2475503 -49038081 - LTR12 LTR ERV1 -440 274 1 221 303 176 0 chrY 2475673 2475792 -49037792 + MIR SINE MIR 120 259 -3 778 161 54 0 chrY 2476785 2476934 -49036650 + L1MA8 LINE L1 5968 6124 -167 * 5511 23 2 10 chrY 2476927 2477792 -49035792 - L1PA2 LINE L1 -588 5567 4712 5297 66 3 17 chrY 2477754 2478506 -49035078 + L1PA2 LINE L1 5555 6260 -31 * 2438 89 0 0 chrY 2478506 2478810 -49034774 - AluSx SINE Alu -8 304 1 5297 66 3 17 chrY 2478810 2478841 -49034743 + L1PA2 LINE L1 6260 6290 -1 24 0 0 0 chrY 2478963 2478987 -49034597 + AT_rich Low_complexity Low_complexity 1 24 0 2939 266 88 27 chrY 2479257 2479641 -49033943 - L2 LINE L2 -214 3099 2740 2290 88 10 0 chrY 2479641 2479949 -49033635 - AluSp SINE Alu -2 311 1 2939 266 88 27 chrY 2479949 2480679 -49032905 - L2 LINE L2 -573 2740 1922 1129 167 0 0 chrY 2480945 2481131 -49032453 - AluJb SINE Alu -8 304 119 399 331 42 83 chrY 2483128 2483488 -49030096 + L2 LINE L2 2927 3271 -1 559 281 2 0 chrY 2484374 2484514 -49029070 - MIR SINE MIR -66 142 1 1142 152 193 16 chrY 2485388 2485631 -49027953 - AluJo SINE Alu -16 286 1 25 0 0 0 chrY 2485835 2485860 -49027724 + AT_rich Low_complexity Low_complexity 1 25 0 526 155 6 39 chrY 2485864 2486045 -49027539 + (TA)n Simple_repeat Simple_repeat 1 175 0 1188 124 10 36 chrY 2486508 2486702 -49026882 - THE1B LTR MaLR 0 364 176 195 259 35 71 chrY 2488281 2488366 -49025218 - L3 LINE CR1 -622 955 874 1098 131 33 25 chrY 2488489 2488705 -49024879 - THE1B LTR MaLR -161 214 1 1334 298 90 52 chrY 2489297 2490116 -49023468 - L1MEd LINE L1 -5267 852 3 2103 95 25 0 chrY 2490151 2490461 -49023123 + AluSg SINE Alu 1 317 0 1727 218 73 19 chrY 2491357 2491825 -49021759 - MLT1D LTR MaLR -6 499 7 1911 154 11 0 chrY 2492016 2492301 -49021283 - AluSx SINE Alu -24 288 1 21 0 0 0 chrY 2492951 2492972 -49020612 + AT_rich Low_complexity Low_complexity 1 21 0 343 305 15 8 chrY 2493099 2493230 -49020354 + CT-rich Low_complexity Low_complexity 3 134 0 198 47 0 70 chrY 2494166 2494200 -49019384 + (GAAAA)n Simple_repeat Simple_repeat 2 34 -7 2210 112 0 3 chrY 2494200 2494512 -49019072 + AluY SINE Alu 1 311 0 198 47 0 70 chrY 2494512 2494520 -49019064 + (GAAAA)n Simple_repeat Simple_repeat 34 41 0 246 240 53 0 chrY 2494637 2494712 -49018872 - MER103 DNA DNA -58 108 30 4733 215 35 90 chrY 2494712 2495077 -49018507 - L1MDa LINE L1 -4905 1635 1251 572 195 0 0 chrY 2495077 2495205 -49018379 - L1MA6 LINE L1 -5 6295 6168 4733 215 35 90 chrY 2495205 2496432 -49017152 - L1MDa LINE L1 -5289 1251 131 22 70 0 0 chrY 2496708 2496751 -49016833 + AT_rich Low_complexity Low_complexity 1 43 0 331 286 185 0 chrY 2497667 2497786 -49015798 - MIR SINE MIR -65 197 57 252 406 0 0 chrY 2497924 2498020 -49015564 - L2 LINE L2 -16 3256 3161 22 35 0 0 chrY 2498450 2498479 -49015105 + AT_rich Low_complexity Low_complexity 1 29 0 4824 177 41 35 chrY 2498971 2500770 -49012814 - L1MA9 LINE L1 0 6312 4527 2378 66 30 3 chrY 2500770 2501073 -49012511 - AluY SINE Alu 0 311 1 2309 88 3 10 chrY 2501073 2501381 -49012203 - AluSq SINE Alu -7 306 1 4824 177 41 35 chrY 2501381 2501462 -49012122 - L1MA9 LINE L1 -1784 4528 4411 2359 176 7 25 chrY 2501462 2501899 -49011685 + Tigger2a DNA MER2_type 1 429 -5 4869 180 34 23 chrY 2501919 2502848 -49010736 - L1MA9 LINE L1 -1754 4392 3446 2191 129 0 0 chrY 2502848 2503158 -49010426 - AluSx SINE Alu -1 311 2 4869 180 34 23 chrY 2503158 2503377 -49010207 - L1MA9 LINE L1 -2700 3446 3231 215 404 22 29 chrY 2503640 2503776 -49009808 + L2 LINE L2 3119 3253 -19 1669 190 7 7 chrY 2503809 2504119 -49009465 - AluJb SINE Alu -2 310 1 19410 177 17 15 chrY 2505345 2506364 -49007220 - L1MA1 LINE L1 -5 7716 6701 2282 107 3 0 chrY 2506364 2506673 -49006911 - AluSp SINE Alu -3 310 1 19410 177 17 15 chrY 2506673 2509670 -49003914 - L1MA1 LINE L1 -1020 6701 3712 2452 75 3 0 chrY 2509670 2509976 -49003608 - AluY SINE Alu -4 307 1 19410 177 17 15 chrY 2509976 2513629 -48999955 - L1MA1 LINE L1 -4009 3712 14 2157 113 3 7 chrY 2514599 2514908 -48998676 - AluSx SINE Alu -4 308 1 3953 170 20 0 chrY 2515629 2516318 -48997266 - L1PA16 LINE L1 -2 6164 5462 318 364 52 13 chrY 2516689 2516843 -48996741 - MIR3 SINE MIR -14 194 35 24 0 0 0 chrY 2516853 2516877 -48996707 + AT_rich Low_complexity Low_complexity 1 24 0 13532 138 13 65 chrY 2517643 2517816 -48995768 - Tigger1 DNA MER2_type -1 2417 2237 11474 32 1 1 chrY 2517816 2519950 -48993634 + L1PA4 LINE L1 4022 6155 0 13532 138 13 65 chrY 2519950 2519968 -48993616 - Tigger1 DNA MER2_type -181 2237 2220 258 81 0 0 chrY 2519968 2520005 -48993579 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 13532 138 13 65 chrY 2520005 2522079 -48991505 - Tigger1 DNA MER2_type -198 2220 40 1237 114 10 0 chrY 2522079 2522280 -48991304 + L1MA2 LINE L1 6102 6304 0 13532 138 13 65 chrY 2522280 2522334 -48991250 - Tigger1 DNA MER2_type -2378 40 236 1655 164 0 41 chrY 2522334 2522627 -48990957 + AluSx SINE Alu 5 285 -27 13532 138 13 65 chrY 2522627 2522853 -48990731 - Tigger1 DNA MER2_type -2181 237 1 398 358 11 21 chrY 2523390 2523580 -48990004 - MARNA DNA Mariner -398 188 1 1783 183 30 3 chrY 2523912 2524212 -48989372 + L1PA13 LINE L1 2 309 -6478 * 2035 242 17 0 chrY 2524200 2524667 -48988917 + L1P LINE L1 2551 3025 -3121 25406 151 20 16 chrY 2524691 2530257 -48983327 + L1PA13 LINE L1 339 5990 -807 5876 109 12 2 chrY 2530256 2531121 -48982463 + L1PA13 LINE L1 5266 6138 -25 * 1148 202 37 0 chrY 2531121 2531364 -48982220 + MER58B DNA MER1_type 90 341 0 21 0 0 0 chrY 2532924 2532945 -48980639 + AT_rich Low_complexity Low_complexity 1 21 0 970 265 109 3 chrY 2533316 2533629 -48979955 + L2 LINE L2 2556 2901 -413 2131 116 0 0 chrY 2534898 2535183 -48978401 - AluSc SINE Alu -24 285 1 7789 161 15 6 chrY 2535275 2537780 -48975804 - L1MA2 LINE L1 0 7723 5194 1305 183 39 4 chrY 2537793 2538023 -48975561 - AluJb SINE Alu -73 239 2 9395 176 20 12 chrY 2538024 2541209 -48972375 - L1MA2 LINE L1 -2360 5205 1994 2060 149 30 25 chrY 2541220 2541582 -48972002 + THE1B LTR MaLR 1 364 0 2670 80 11 0 chrY 2541582 2541946 -48971638 + THE1B-int LTR MaLR 1 368 -1212 285 29 0 0 chrY 2541948 2541982 -48971602 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 6081 92 17 27 chrY 2541982 2542937 -48970647 - L1PA8 LINE L1 -24 6148 5199 4244 125 16 0 chrY 2542926 2543550 -48970034 + THE1B-int LTR MaLR 350 983 -597 * 278 75 0 0 chrY 2543542 2543582 -48970002 + THE1B-int LTR MaLR 1541 1580 0 * 2131 146 34 14 chrY 2543582 2543938 -48969646 + THE1B LTR MaLR 1 363 -1 424 232 0 0 chrY 2543966 2544048 -48969536 - L1MA2 LINE L1 -5656 1909 1828 8659 190 40 10 chrY 2544059 2545694 -48967890 - L1MA2 LINE L1 -5861 1704 21 1082 150 9 9 chrY 2545899 2546112 -48967472 - L1MA4A LINE L1 -1 6302 6090 2161 112 3 0 chrY 2546617 2546911 -48966673 + AluSg SINE Alu 1 295 -15 28 0 0 0 chrY 2547080 2547108 -48966476 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrY 2547133 2547165 -48966419 + AT_rich Low_complexity Low_complexity 1 32 0 2216 91 3 13 chrY 2547560 2547868 -48965716 - AluSg1 SINE Alu -4 305 1 25 0 0 0 chrY 2549040 2549065 -48964519 + AT_rich Low_complexity Low_complexity 1 25 0 2210 104 3 0 chrY 2550588 2550886 -48962698 + AluSx SINE Alu 1 299 -13 757 272 30 5 chrY 2550993 2551195 -48962389 - MER63A DNA MER1_type -3 207 1 5463 74 12 19 chrY 2553650 2554422 -48959162 - MER4E LTR ERV1 0 766 1 25 51 0 0 chrY 2554576 2554615 -48958969 + AT_rich Low_complexity Low_complexity 1 39 0 1925 120 27 3 chrY 2554707 2555007 -48958577 - AluSq SINE Alu -6 307 1 656 233 14 20 chrY 2555395 2555541 -48958043 + MIR SINE MIR 4 148 -114 215 330 34 42 chrY 2555590 2555708 -48957876 + L2 LINE L2 3192 3308 -5 413 236 9 0 chrY 2556724 2556830 -48956754 + L1MB7 LINE L1 6066 6172 -12 2250 95 7 0 chrY 2558514 2558808 -48954776 - AluSg SINE Alu -11 299 4 335 301 91 50 chrY 2558818 2559017 -48954567 - MIR SINE MIR -22 240 34 2562 64 3 0 chrY 2559482 2559793 -48953791 + AluSp SINE Alu 2 313 0 5701 92 19 14 chrY 2560501 2561644 -48951940 - L1PA13 LINE L1 -3 6160 4980 26 88 0 0 chrY 2561649 2561717 -48951867 + AT_rich Low_complexity Low_complexity 1 68 0 811 214 17 12 chrY 2563178 2563351 -48950233 + L1PB4 LINE L1 5980 6153 -3 21 0 0 0 chrY 2563430 2563451 -48950133 + AT_rich Low_complexity Low_complexity 1 21 0 252 271 36 79 chrY 2564227 2564367 -48949217 - MIR SINE MIR -55 207 74 6008 184 25 7 chrY 2565263 2566721 -48946863 - L1PA15 LINE L1 -3 6813 5298 180 97 0 0 chrY 2566721 2566752 -48946832 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6008 184 25 7 chrY 2566752 2567469 -48946115 - L1PA15 LINE L1 -1518 5298 4595 6454 54 8 0 chrY 2567469 2568288 -48945296 + L1PA7 LINE L1 5329 6154 0 28 0 0 0 chrY 2568299 2568327 -48945257 + AT_rich Low_complexity Low_complexity 1 28 0 3198 282 22 15 chrY 2568327 2569248 -48944336 - L1PA15 LINE L1 -4818 1969 1043 876 246 0 47 chrY 2569323 2569447 -48944137 - L1ME2 LINE L1 -16 6148 6041 286 23 47 0 chrY 2569447 2569490 -48944094 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 876 246 0 47 chrY 2569490 2569621 -48943963 - L1ME2 LINE L1 -123 6041 5905 13601 171 38 48 chrY 2570101 2571776 -48941808 - L1MA2 LINE L1 -450 7273 5582 1871 159 3 0 chrY 2571776 2572066 -48941518 + AluSx SINE Alu 2 292 -20 13601 171 38 48 chrY 2572066 2573508 -48940076 - L1MA2 LINE L1 -2141 5582 4126 2094 127 0 0 chrY 2573508 2573792 -48939792 - AluSx SINE Alu -28 284 1 13601 171 38 48 chrY 2573792 2574630 -48938954 - L1MA2 LINE L1 -3597 4126 3281 1900 157 0 14 chrY 2574630 2574923 -48938661 - AluSx SINE Alu -23 289 1 13601 171 38 48 chrY 2574923 2575739 -48937845 - L1MA2 LINE L1 -4442 3281 2458 2115 119 0 17 chrY 2575739 2576041 -48937543 - AluSg SINE Alu -12 298 2 13601 171 38 48 chrY 2576041 2578327 -48935257 - L1MA2 LINE L1 -5265 2458 11 339 378 10 31 chrY 2580194 2580387 -48933197 - MER5A DNA MER1_type 0 189 1 259 248 103 43 chrY 2580709 2580826 -48932758 - MIR SINE MIR -66 196 73 439 313 27 0 chrY 2582003 2582115 -48931469 - L2 LINE L2 -2 3270 3156 180 365 16 0 chrY 2582186 2582249 -48931335 + L2 LINE L2 3205 3268 -4 194 466 0 8 chrY 2582266 2582399 -48931185 + MIR SINE MIR 16 147 -61 525 32 0 0 chrY 2582553 2582616 -48930968 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 642 158 88 0 chrY 2584003 2584117 -48929467 - MLT1D LTR MaLR -22 483 360 827 254 29 10 chrY 2584151 2584356 -48929228 - MER82 DNA MER2_type -1 652 444 312 342 50 20 chrY 2584387 2584586 -48928998 + MIR SINE MIR 1 205 -57 399 250 0 21 chrY 2584606 2584702 -48928882 - MER82 DNA MER2_type -559 94 1 1470 230 83 35 chrY 2584813 2585295 -48928289 + MLT1D LTR MaLR 1 505 0 2739 173 38 6 chrY 2585532 2586057 -48927527 - MER34 LTR ERV1 0 542 1 285 165 51 51 chrY 2586082 2586161 -48927423 + MER69 DNA AcHobo 67 145 -1081 277 217 0 0 chrY 2586185 2586245 -48927339 + MER69 DNA AcHobo 2467 2526 0 318 132 0 0 chrY 2586650 2586703 -48926881 + (CA)n Simple_repeat Simple_repeat 2 54 0 629 306 5 24 chrY 2586886 2587092 -48926492 - MIR SINE MIR -48 214 13 2109 86 7 11 chrY 2588743 2589022 -48924562 + AluSg SINE Alu 1 278 -32 2092 123 3 0 chrY 2589161 2589462 -48924122 + AluSp SINE Alu 1 302 -11 675 253 154 6 chrY 2589880 2590186 -48923398 - MER57A LTR ERV1 -4 398 60 242 338 12 0 chrY 2590199 2590279 -48923305 - MER93a LTR ERV1 -321 81 1 180 0 0 0 chrY 2590384 2590404 -48923180 + (A)n Simple_repeat Simple_repeat 1 20 0 1203 215 56 34 chrY 2590730 2591053 -48922531 + MER33 DNA MER1_type 1 316 -8 193 75 50 0 chrY 2591165 2591205 -48922379 + A-rich Low_complexity Low_complexity 3 44 0 3653 95 21 83 chrY 2591669 2592051 -48921533 - LTR66 LTR ERVL 0 610 283 2060 113 13 3 chrY 2592051 2592353 -48921231 - AluSp SINE Alu -8 305 1 3653 95 21 83 chrY 2592353 2592620 -48920964 - LTR66 LTR ERVL -327 283 1 229 129 69 0 chrY 2592865 2592981 -48920603 + (TA)n Simple_repeat Simple_repeat 1 124 0 189 0 0 0 chrY 2593915 2593936 -48919648 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2420 99 0 0 chrY 2594506 2594810 -48918774 - AluSq SINE Alu -8 305 2 5542 70 16 19 chrY 2596358 2597127 -48916457 - MER4E LTR ERV1 0 766 1 1375 163 11 70 chrY 2597288 2597655 -48915929 - MER4A LTR ERV1 0 664 261 511 132 22 11 chrY 2597656 2597747 -48915837 - MER4A LTR ERV1 -572 92 1 2208 138 66 17 chrY 2597749 2598156 -48915428 + MSTA LTR MaLR 2 428 0 297 0 0 0 chrY 2599076 2599109 -48914475 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chrY 2599116 2599139 -48914445 + AT_rich Low_complexity Low_complexity 1 23 0 279 114 0 0 chrY 2601352 2601396 -48912188 + (TG)n Simple_repeat Simple_repeat 2 45 0 1969 119 53 44 chrY 2601430 2601791 -48911793 - THE1B LTR MaLR 0 364 1 1536 185 34 7 chrY 2602050 2602342 -48911242 + AluJo SINE Alu 1 300 -12 213 164 18 55 chrY 2602612 2602645 -48910939 + (TATATG)n Simple_repeat Simple_repeat 6 38 -20 1296 186 83 31 chrY 2602645 2602972 -48910612 + MER2 DNA MER2_type 1 344 0 213 164 18 55 chrY 2602972 2602993 -48910591 + (TATATG)n Simple_repeat Simple_repeat 38 58 0 22 0 0 0 chrY 2603317 2603339 -48910245 + AT_rich Low_complexity Low_complexity 1 22 0 2410 94 3 0 chrY 2603550 2603859 -48909725 - AluSp SINE Alu -3 310 1 24 0 0 0 chrY 2605007 2605031 -48908553 + AT_rich Low_complexity Low_complexity 1 24 0 3294 69 5 7 chrY 2605149 2605598 -48907986 - LTR7 LTR ERV1 -2 448 1 2267 84 65 14 chrY 2605598 2605969 -48907615 - HERVH LTR ERV1 0 7713 7324 1326 119 18 9 chrY 2605969 2606187 -48907397 - HERVH LTR ERV1 -1894 5819 5600 3933 146 11 3 chrY 2606188 2606845 -48906739 - HERVH LTR ERV1 -2564 5149 4488 3146 113 4 6 chrY 2606847 2607350 -48906234 - HERVH LTR ERV1 -3720 3993 3492 816 155 20 0 chrY 2607340 2607488 -48906096 - HERVH LTR ERV1 -4423 3290 3140 * 14417 110 26 17 chrY 2607482 2610338 -48903246 - HERVH LTR ERV1 -4726 2987 1 3465 56 2 7 chrY 2610340 2610790 -48902794 - LTR7 LTR ERV1 -2 448 1 322 362 62 18 chrY 2611025 2611301 -48902283 - L1M4 LINE L1 -1491 4655 4368 3263 124 53 51 chrY 2611652 2612257 -48901327 + MER4B LTR ERV1 5 610 0 1687 53 5 5 chrY 2612337 2612544 -48901040 + AluSp SINE Alu 1 207 -106 1791 68 0 0 chrY 2612545 2612780 -48900804 + MER4E LTR ERV1 532 766 0 3011 142 29 107 chrY 2613788 2613983 -48899601 - LTR8 LTR ERV1 0 691 482 1954 107 50 11 chrY 2613983 2614264 -48899320 + AluSx SINE Alu 1 292 -20 3011 142 29 107 chrY 2614264 2614817 -48898767 - LTR8 LTR ERV1 -209 482 1 523 128 248 8 chrY 2615268 2615385 -48898199 - MER4C LTR ERV1 -21 444 300 1059 177 125 26 chrY 2615447 2615758 -48897826 - MER4A LTR ERV1 -322 342 1 216 0 0 0 chrY 2616101 2616125 -48897459 + (A)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chrY 2616360 2616390 -48897194 + AT_rich Low_complexity Low_complexity 1 30 0 393 323 63 32 chrY 2616459 2616618 -48896966 - MIR3 SINE MIR -9 199 32 1951 67 86 4 chrY 2616618 2616911 -48896673 - AluY SINE Alu 0 311 1 393 323 63 32 chrY 2616911 2616940 -48896644 - MIR3 SINE MIR -176 32 5 204 40 0 0 chrY 2616963 2616988 -48896596 + (A)n Simple_repeat Simple_repeat 1 25 0 1825 92 92 4 chrY 2619690 2619991 -48893593 - AluSx SINE Alu 0 324 1 1853 230 69 41 chrY 2620308 2620847 -48892737 - MLT2B3 LTR ERVL 0 554 1 180 77 0 0 chrY 2621451 2621477 -48892107 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1742 163 3 7 chrY 2621481 2621770 -48891814 - AluJb SINE Alu -24 288 1 26 0 0 0 chrY 2621773 2621799 -48891785 + AT_rich Low_complexity Low_complexity 1 26 0 310 396 0 0 chrY 2621855 2621994 -48891590 + MIR3 SINE MIR 64 202 -6 2011 116 7 3 chrY 2622042 2622335 -48891249 + AluSq SINE Alu 6 299 -14 2551 57 0 0 chrY 2623618 2623915 -48889669 - AluY SINE Alu -14 297 1 202 147 53 53 chrY 2623935 2623992 -48889592 + (TTAA)n Simple_repeat Simple_repeat 2 61 -15 1859 142 10 7 chrY 2623992 2624281 -48889303 - AluJb SINE Alu -22 290 1 202 147 53 53 chrY 2624281 2624298 -48889286 + (TTAA)n Simple_repeat Simple_repeat 60 76 0 25 75 0 0 chrY 2624529 2624582 -48889002 + AT_rich Low_complexity Low_complexity 1 53 0 2210 109 0 0 chrY 2625026 2625328 -48888256 - AluSg1 SINE Alu -7 302 1 2372 92 3 0 chrY 2626016 2626321 -48887263 - AluSx SINE Alu -2 310 5 1534 80 11 0 chrY 2626587 2626798 -48886786 - AluSc SINE Alu 0 305 93 2086 110 11 0 chrY 2626846 2627158 -48886426 - AluSq SINE Alu 0 315 1 2033 127 0 0 chrY 2627539 2627823 -48885761 + AluSx SINE Alu 9 292 -20 987 310 163 23 chrY 2628238 2629062 -48884522 + L2 LINE L2 2098 3066 -247 487 256 60 88 chrY 2629140 2629210 -48884374 - MER102b DNA MER1_type -1087 341 271 1970 144 7 0 chrY 2629210 2629502 -48884082 + AluSp SINE Alu 1 294 -19 487 256 60 88 chrY 2629502 2629782 -48883802 - MER102b DNA MER1_type -1157 271 1 591 266 32 7 chrY 2629788 2629942 -48883642 + L2 LINE L2 3156 3313 0 1265 71 0 0 chrY 2630590 2630758 -48882826 - L1PA5 LINE L1 0 6154 5987 2214 112 0 0 chrY 2630786 2631102 -48882482 + AluSq SINE Alu 1 316 0 2243 114 7 0 chrY 2631273 2631581 -48882003 + AluSp SINE Alu 2 311 -2 34 55 0 0 chrY 2631581 2631636 -48881948 + AT_rich Low_complexity Low_complexity 1 55 0 381 22 0 0 chrY 2631658 2631704 -48881880 + (TG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chrY 2631750 2631772 -48881812 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrY 2632155 2632185 -48881399 + AT_rich Low_complexity Low_complexity 1 30 0 2233 106 0 7 chrY 2632481 2632784 -48880800 - AluSg SINE Alu -9 301 1 2216 103 0 7 chrY 2633365 2633666 -48879918 - AluSx SINE Alu -13 299 1 25 31 0 0 chrY 2633704 2633736 -48879848 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chrY 2633946 2633989 -48879595 + AT_rich Low_complexity Low_complexity 1 43 0 2115 93 4 4 chrY 2634080 2634360 -48879224 + AluSg SINE Alu 1 280 -30 948 297 86 26 chrY 2634386 2634877 -48878707 - MER34 LTR ERV1 -18 524 5 243 146 0 0 chrY 2634929 2634970 -48878614 + (CA)n Simple_repeat Simple_repeat 2 42 0 2326 77 7 17 chrY 2635340 2635640 -48877944 + AluSp SINE Alu 3 299 -14 4633 70 55 23 chrY 2636396 2636957 -48876627 - PABL_A LTR ERV1 0 660 118 2366 81 0 26 chrY 2636957 2637267 -48876317 + AluSq SINE Alu 1 302 -11 2263 83 0 17 chrY 2637267 2637567 -48876017 + AluSc SINE Alu 1 295 -14 504 117 0 0 chrY 2637568 2637645 -48875939 + (TA)n Simple_repeat Simple_repeat 1 77 0 4633 70 55 23 chrY 2637645 2637720 -48875864 - PABL_A LTR ERV1 -541 119 1 30 45 0 0 chrY 2637970 2638014 -48875570 + AT_rich Low_complexity Low_complexity 1 44 0 2183 102 7 0 chrY 2638293 2638598 -48874986 - AluSp SINE Alu -6 307 1 3666 101 21 62 chrY 2638723 2639349 -48874235 - MER4A LTR ERV1 0 600 1 189 0 0 0 chrY 2639409 2639430 -48874154 + (A)n Simple_repeat Simple_repeat 1 21 0 3541 107 57 0 chrY 2639459 2639983 -48873601 - MER41A LTR ERV1 0 554 1 345 47 0 0 chrY 2640685 2640728 -48872856 + (TG)n Simple_repeat Simple_repeat 1 43 0 793 231 74 9 chrY 2641119 2641335 -48872249 - L2 LINE L2 -280 3033 2804 1048 254 17 7 chrY 2641354 2641649 -48871935 + MER58B DNA MER1_type 44 341 0 529 268 12 48 chrY 2641656 2641824 -48871760 - L2 LINE L2 -507 2807 2646 998 186 12 0 chrY 2641922 2642094 -48871490 - FAM SINE Alu 0 175 2 1448 153 10 45 chrY 2642466 2642780 -48870804 - L1MB8 LINE L1 -15 6163 5861 3296 89 9 2 chrY 2642785 2643247 -48870337 - L1PA10 LINE L1 -2 6166 5702 225 135 27 81 chrY 2643396 2643470 -48870114 + A-rich Low_complexity Low_complexity 1 70 0 2200 90 42 3 chrY 2644204 2644493 -48869091 - AluSg SINE Alu 0 310 11 203 294 18 18 chrY 2645066 2645175 -48868409 + (TA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chrY 2646571 2646592 -48866992 + AT_rich Low_complexity Low_complexity 1 21 0 1847 79 18 129 chrY 2647086 2647426 -48866158 - AluSp SINE Alu -1 302 1 2855 16 0 6 chrY 2647728 2648048 -48865536 - AluYb8 SINE Alu 0 318 1 419 186 10 0 chrY 2648104 2648206 -48865378 + (CA)n Simple_repeat Simple_repeat 2 104 0 1538 198 0 11 chrY 2648244 2648527 -48865057 + AluJb SINE Alu 1 280 -32 7392 94 5 17 chrY 2648529 2649567 -48864017 + THE1A-int LTR MaLR 556 1580 0 2463 91 3 0 chrY 2649567 2649897 -48863687 + THE1A LTR MaLR 1 331 -24 22 0 0 0 chrY 2650844 2650866 -48862718 + AT_rich Low_complexity Low_complexity 1 22 0 2105 128 0 0 chrY 2651978 2652276 -48861308 + AluSx SINE Alu 1 298 -14 941 111 6 18 chrY 2653048 2653171 -48860413 + (TTCC)n Simple_repeat Simple_repeat 1 290 0 941 111 6 18 chrY 2653171 2653342 -48860242 + (TTCC)n Simple_repeat Simple_repeat 3 171 0 798 177 0 17 chrY 2653359 2653540 -48860044 + CT-rich Low_complexity Low_complexity 3 180 0 2068 98 39 0 chrY 2653560 2653846 -48859738 - AluSx SINE Alu -15 297 1 23 33 0 0 chrY 2653945 2653975 -48859609 + AT_rich Low_complexity Low_complexity 1 30 0 198 143 0 0 chrY 2654073 2654108 -48859476 + (TA)n Simple_repeat Simple_repeat 2 36 0 297 0 0 0 chrY 2654108 2654141 -48859443 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 74 0 0 chrY 2654746 2654773 -48858811 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chrY 2654774 2654794 -48858790 + (TG)n Simple_repeat Simple_repeat 1 20 0 369 109 0 0 chrY 2654794 2654849 -48858735 + (TA)n Simple_repeat Simple_repeat 1 55 0 2907 258 25 22 chrY 2654914 2655820 -48857764 - L1ME1 LINE L1 -1 6165 5257 253 212 0 15 chrY 2655901 2655967 -48857617 - L1ME1 LINE L1 -1465 4681 4617 1082 266 143 22 chrY 2655970 2656502 -48857082 - L1ME1 LINE L1 -1592 4554 3929 2371 71 0 0 chrY 2656502 2656825 -48856759 - AluY SINE Alu 0 311 1 1082 266 143 22 chrY 2656825 2656936 -48856648 - L1ME1 LINE L1 -2217 3929 3833 22 0 0 0 chrY 2657726 2657748 -48855836 + AT_rich Low_complexity Low_complexity 1 22 0 39 50 0 0 chrY 2658023 2658083 -48855501 + AT_rich Low_complexity Low_complexity 1 60 0 198 0 0 0 chrY 2658083 2658105 -48855479 + (TATG)n Simple_repeat Simple_repeat 3 24 0 2167 98 40 0 chrY 2658105 2658401 -48855183 - AluSx SINE Alu -4 308 1 297 0 0 0 chrY 2658651 2658684 -48854900 + (CA)n Simple_repeat Simple_repeat 2 34 0 3876 128 71 46 chrY 2659753 2660517 -48853067 + LTR1 LTR ERV1 1 783 -2 1104 245 93 117 chrY 2660724 2660941 -48852643 + L2 LINE L2 2374 2595 -718 2458 62 0 10 chrY 2660941 2661250 -48852334 - AluY SINE Alu -4 307 2 1104 245 93 117 chrY 2661250 2661994 -48851590 + L2 LINE L2 2595 3313 0 22 80 0 0 chrY 2663111 2663161 -48850423 + AT_rich Low_complexity Low_complexity 1 50 0 2070 128 0 7 chrY 2663282 2663587 -48849997 + AluSq SINE Alu 1 303 -10 1542 135 0 0 chrY 2663664 2663886 -48849698 + AluSg/x SINE Alu 85 306 -4 2144 109 0 0 chrY 2663995 2664279 -48849305 - AluSc SINE Alu -25 284 1 26 50 0 0 chrY 2664742 2664782 -48848802 + AT_rich Low_complexity Low_complexity 1 40 0 1642 156 158 18 chrY 2664980 2665416 -48848168 - LTR54B LTR ERV1 -1 497 1 219 114 0 0 chrY 2665425 2665460 -48848124 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2925 135 12 6 chrY 2665509 2666318 -48847266 - L1PB1 LINE L1 0 6867 5922 * 8645 132 51 9 chrY 2666311 2667391 -48846193 - L1PB1 LINE L1 -4152 2711 1678 2173 129 0 0 chrY 2667391 2667686 -48845898 - AluSx SINE Alu -15 297 3 8645 132 51 9 chrY 2667686 2669066 -48844518 - L1PB1 LINE L1 -5185 1678 2 2327 125 5 35 chrY 2669901 2670276 -48843308 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrY 2671296 2671317 -48842267 + AT_rich Low_complexity Low_complexity 1 21 0 1483 216 14 7 chrY 2671812 2672108 -48841476 + AluJo SINE Alu 1 298 -14 2486 45 0 0 chrY 2672465 2672752 -48840832 + AluY SINE Alu 15 301 -10 1557 193 0 0 chrY 2673485 2673739 -48839845 - AluJb SINE Alu -58 254 1 1493 173 108 0 chrY 2673772 2674097 -48839487 + AluJb SINE Alu 5 359 0 529 266 76 11 chrY 2674204 2674388 -48839196 - MIR3 SINE MIR -5 203 8 268 235 0 0 chrY 2675215 2675266 -48838318 - L2 LINE L2 -9 3304 3254 309 270 21 159 chrY 2675332 2675521 -48838063 - L2 LINE L2 -55 3217 3055 1231 173 20 123 chrY 2676108 2676302 -48837282 - AluJo SINE Alu -5 307 161 2237 115 0 0 chrY 2676302 2676615 -48836969 - AluSq SINE Alu 0 313 1 1231 173 20 123 chrY 2676615 2676762 -48836822 - AluJo SINE Alu -151 161 1 223 184 0 0 chrY 2676847 2676887 -48836697 - MIR SINE MIR -63 145 111 293 259 47 12 chrY 2676932 2677017 -48836567 - MER5B DNA MER1_type -2 176 89 1675 256 130 19 chrY 2677021 2677123 -48836461 - L1 LINE L1 -1439 4707 4618 1901 149 17 3 chrY 2677123 2677419 -48836165 - AluSx SINE Alu -12 300 1 1675 256 130 19 chrY 2677419 2678006 -48835578 - L1 LINE L1 -1528 4618 3941 1160 133 23 0 chrY 2678045 2678218 -48835366 - FRAM SINE Alu -4 172 1 21 0 0 0 chrY 2679015 2679036 -48834548 + AT_rich Low_complexity Low_complexity 1 21 0 2399 76 3 0 chrY 2679858 2680162 -48833422 - AluSp SINE Alu -8 305 1 3056 98 77 8 chrY 2680325 2680803 -48832781 - MER9 LTR ERVK 0 511 1 195 162 0 0 chrY 2681057 2681094 -48832490 + A-rich Low_complexity Low_complexity 1 37 0 213 139 0 0 chrY 2681121 2681164 -48832420 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 396 191 0 135 chrY 2681484 2681610 -48831974 + MIR SINE MIR 124 232 -30 1990 112 3 0 chrY 2681794 2682088 -48831496 - L1PA8 LINE L1 0 6172 5878 2061 148 119 10 chrY 2682376 2682762 -48830822 + MSTA LTR MaLR 1 428 0 1084 95 114 0 chrY 2683011 2683169 -48830415 - AluJb SINE Alu -4 308 133 23 0 0 0 chrY 2683814 2683837 -48829747 + AT_rich Low_complexity Low_complexity 1 23 0 1842 163 0 25 chrY 2685529 2685849 -48827735 - AluJb SINE Alu 0 312 1 225 132 0 0 chrY 2686507 2686545 -48827039 + (A)n Simple_repeat Simple_repeat 1 38 0 2450 55 6 10 chrY 2687994 2688306 -48825278 + AluY SINE Alu 1 311 0 1658 168 59 22 chrY 2688403 2688760 -48824824 + L1MC3 LINE L1 7396 7765 -20 1934 136 0 7 chrY 2688783 2689104 -48824480 - AluSq SINE Alu 0 319 1 1885 231 49 49 chrY 2689972 2690393 -48823191 - L1M4 LINE L1 -1815 5142 4722 291 28 0 0 chrY 2690393 2690429 -48823155 + (TG)n Simple_repeat Simple_repeat 2 37 0 1885 231 49 49 chrY 2690429 2690448 -48823136 - L1M4 LINE L1 -2235 4722 4704 2168 101 3 10 chrY 2690448 2690746 -48822838 + AluSq SINE Alu 1 296 -17 1885 231 49 49 chrY 2690746 2690897 -48822687 - L1M4 LINE L1 -2252 4705 4550 * 5138 130 5 0 chrY 2690889 2691668 -48821916 - L1PA15 LINE L1 -2 6814 6032 11354 209 14 9 chrY 2691673 2693366 -48820218 - L1PA15 LINE L1 -869 5928 4216 4680 77 24 24 chrY 2693366 2694026 -48819558 - PABL_A LTR ERV1 0 660 1 11354 209 14 9 chrY 2694026 2694900 -48818684 - L1PA15 LINE L1 -2581 4216 3348 286 24 0 0 chrY 2694903 2694944 -48818640 + L1MA3 LINE L1 6265 6305 0 1112 176 0 134 chrY 2694952 2695124 -48818460 - L1PA15 LINE L1 -5026 1761 1660 2141 110 13 3 chrY 2695124 2695424 -48818160 - AluSg SINE Alu -6 304 2 1112 176 0 134 chrY 2695424 2695610 -48817974 - L1PA15 LINE L1 -5127 1660 1451 * 2771 250 9 28 chrY 2695602 2696281 -48817303 - L1PA15 LINE L1 -5920 867 202 195 125 0 0 chrY 2696286 2696326 -48817258 + (T)n Simple_repeat Simple_repeat 1 40 0 957 217 22 18 chrY 2696326 2696552 -48817032 - L1M4 LINE L1 -2401 4556 4330 1652 311 50 19 chrY 2696553 2697168 -48816416 - L1M4 LINE L1 -6215 644 11 195 359 28 21 chrY 2697272 2697414 -48816170 - L2 LINE L2 -498 2816 2674 414 365 57 30 chrY 2697637 2698040 -48815544 - L2 LINE L2 -924 2390 1977 25 0 0 0 chrY 2698845 2698870 -48814714 + AT_rich Low_complexity Low_complexity 1 25 0 302 280 16 48 chrY 2699202 2699327 -48814257 - MIR3 SINE MIR -1 207 87 1190 201 43 114 chrY 2699898 2700292 -48813292 - MLT1B LTR MaLR -24 366 1 7442 226 55 31 chrY 2700598 2701290 -48812294 + L1MB3 LINE L1 2676 3350 -2833 2013 103 15 0 chrY 2701290 2701412 -48812172 + AluSg SINE Alu 3 122 -188 351 0 0 0 chrY 2701412 2701451 -48812133 + (CA)n Simple_repeat Simple_repeat 2 40 0 2013 103 15 0 chrY 2701451 2701599 -48811985 + AluSg SINE Alu 122 277 -33 7442 226 55 31 chrY 2701599 2704335 -48809249 + L1MB3 LINE L1 3350 6183 0 1809 114 78 0 chrY 2705062 2705333 -48808251 - AluSq SINE Alu -15 298 7 183 269 0 77 chrY 2707718 2707796 -48805788 - L3 LINE CR1 -1328 249 178 * 345 276 219 10 chrY 2707795 2707991 -48805593 - MIR SINE MIR -6 256 20 3484 149 51 39 chrY 2708166 2709261 -48804323 - Tigger3b DNA MER2_type 0 1232 1 1619 203 3 0 chrY 2710037 2710332 -48803252 - AluJb SINE Alu -16 296 1 243 285 89 49 chrY 2710580 2710703 -48802881 - L2 LINE L2 -9 3263 3136 21 57 0 0 chrY 2710703 2710738 -48802846 + AT_rich Low_complexity Low_complexity 1 35 0 510 331 73 8 chrY 2712190 2712435 -48801149 + MIR SINE MIR 2 262 0 204 182 0 0 chrY 2712437 2712481 -48801103 + (TAG)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chrY 2713807 2713828 -48799756 + AT_rich Low_complexity Low_complexity 1 21 0 828 152 8 0 chrY 2714023 2714148 -48799436 - FLAM_C SINE Alu -17 126 1 360 271 45 45 chrY 2714148 2714281 -48799303 + MIR SINE MIR 116 248 -14 24 32 0 0 chrY 2714307 2714338 -48799246 + AT_rich Low_complexity Low_complexity 1 31 0 312 27 0 0 chrY 2714883 2714920 -48798664 + (TC)n Simple_repeat Simple_repeat 2 38 0 5154 141 25 20 chrY 2715143 2715672 -48797912 - MER49 LTR ERV1 -2 921 383 2574 39 0 10 chrY 2715672 2715978 -48797606 - AluY SINE Alu -8 303 1 5154 141 25 20 chrY 2715978 2716364 -48797220 - MER49 LTR ERV1 -540 383 1 235 304 69 0 chrY 2716830 2716932 -48796652 - MIR SINE MIR -52 210 102 21 0 0 0 chrY 2718032 2718053 -48795531 + AT_rich Low_complexity Low_complexity 1 21 0 832 20 0 0 chrY 2718053 2718151 -48795433 - L1PA3 LINE L1 -3 6152 6055 2668 142 50 0 chrY 2719163 2719601 -48793983 - L1PA15 LINE L1 -13 6152 5693 640 166 106 46 chrY 2720498 2720649 -48792935 - MLT1G LTR MaLR -13 554 395 761 199 79 168 chrY 2720695 2721023 -48792561 - MLT1G LTR MaLR -295 300 3 198 0 0 0 chrY 2721100 2721122 -48792462 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 384 22 0 0 chrY 2721121 2721166 -48792418 + (GA)n Simple_repeat Simple_repeat 2 46 0 758 329 19 25 chrY 2722482 2722801 -48790783 + L1ME2 LINE L1 35 351 -6045 * 3381 257 36 14 chrY 2722798 2723888 -48789696 + L1ME2 LINE L1 3056 4169 -2046 4814 117 8 1 chrY 2723888 2724630 -48788954 + L1MA3 LINE L1 5559 6305 0 2702 246 52 31 chrY 2724646 2725598 -48787986 + L1ME2 LINE L1 5260 6232 -1 670 191 6 6 chrY 2725755 2725912 -48787672 + CT-rich Low_complexity Low_complexity 3 159 0 217 240 0 40 chrY 2726887 2726937 -48786647 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 339 25 0 0 chrY 2727230 2727270 -48786314 + (CAG)n Simple_repeat Simple_repeat 1 40 0 523 282 23 0 chrY 2727273 2727404 -48786180 + MER5A DNA MER1_type 50 183 -6 389 353 5 33 chrY 2727600 2727784 -48785800 + MIR SINE MIR 41 219 -43 4173 161 23 1 chrY 2728480 2729206 -48784378 + Tigger2 DNA MER2_type 3 744 -1974 1605 134 16 0 chrY 2729273 2729526 -48784058 + Tigger2 DNA MER2_type 2462 2718 0 23 0 0 0 chrY 2731033 2731056 -48782528 + AT_rich Low_complexity Low_complexity 1 23 0 300 281 149 16 chrY 2731941 2732062 -48781522 - L2 LINE L2 -2 3270 3134 2053 220 0 0 chrY 2733406 2733875 -48779709 + L1 LINE L1 4652 5120 -1026 2720 128 31 0 chrY 2733876 2734291 -48779293 - MSTA LTR MaLR 0 428 1 7912 192 46 3 chrY 2734291 2735870 -48777714 - MSTA-int LTR MaLR 0 1651 6 2614 142 31 0 chrY 2735883 2736298 -48777286 - MSTA LTR MaLR 0 428 1 5117 156 14 19 chrY 2736302 2737353 -48776231 + L1PA16 LINE L1 5120 6165 -1 23 33 0 0 chrY 2738758 2738788 -48774796 + AT_rich Low_complexity Low_complexity 1 30 0 185 370 41 0 chrY 2738863 2738936 -48774648 - MIR SINE MIR -114 94 19 28 0 0 0 chrY 2741606 2741634 -48771950 + AT_rich Low_complexity Low_complexity 1 28 0 241 260 13 26 chrY 2742813 2742890 -48770694 - MIR SINE MIR -183 79 4 2027 122 3 3 chrY 2742983 2743299 -48770285 - AluSq SINE Alu 0 316 1 729 252 35 53 chrY 2743867 2744088 -48769496 + L2 LINE L2 2633 2849 -465 2082 146 5 45 chrY 2744088 2744466 -48769118 + MER47A DNA MER2_type 4 366 0 729 252 35 53 chrY 2744466 2744526 -48769058 + L2 LINE L2 2849 2909 -405 2909 164 45 7 chrY 2744534 2745250 -48768334 - L1PBa LINE L1 -4921 1942 1 407 335 73 28 chrY 2746651 2746830 -48766754 - MIR3 SINE MIR -7 201 15 343 250 56 19 chrY 2747087 2747195 -48766389 - MARNA DNA Mariner -355 231 120 1964 178 19 3 chrY 2749287 2749646 -48763938 + MLT1A1 LTR MaLR 1 365 0 313 277 119 64 chrY 2749947 2750149 -48763435 - L2 LINE L2 -903 2411 2199 206 224 20 0 chrY 2750184 2750233 -48763351 - L2 LINE L2 0 3313 3264 211 233 33 17 chrY 2752584 2752644 -48760940 - L2 LINE L2 -3 3310 3250 187 316 74 51 chrY 2753096 2753311 -48760273 + L2 LINE L2 1587 1806 -1508 5810 220 34 27 chrY 2753529 2756042 -48757542 - L1MB3 LINE L1 -9 6568 4027 6115 126 27 35 chrY 2756042 2756636 -48756948 - Tigger3b DNA MER2_type -1798 1230 646 759 162 75 64 chrY 2756636 2756809 -48756775 + FAM SINE Alu 1 175 0 6115 126 27 35 chrY 2756809 2757280 -48756304 - Tigger3b DNA MER2_type -2382 646 173 738 168 0 0 chrY 2757315 2757434 -48756150 - FLAM_C SINE Alu -24 119 1 518 158 37 0 chrY 2757434 2757516 -48756068 - Tigger3b DNA MER2_type -1050 181 97 19838 146 12 89 chrY 2757519 2761860 -48751724 - L1P LINE L1 -2140 4006 2 1950 248 43 63 chrY 2761854 2762352 -48751232 - L1MB3 LINE L1 -3053 3487 3010 * 2373 91 3 0 chrY 2762352 2762659 -48750925 - AluSg SINE Alu -2 308 1 1950 248 43 63 chrY 2762659 2763167 -48750417 - L1MB3 LINE L1 -3530 3010 2494 531 277 87 31 chrY 2763474 2763669 -48749915 - L2 LINE L2 -5 3308 3103 25 75 0 0 chrY 2763859 2763912 -48749672 + AT_rich Low_complexity Low_complexity 1 53 0 205 250 0 0 chrY 2764466 2764518 -48749066 + (CAG)n Simple_repeat Simple_repeat 1 52 0 2844 177 23 8 chrY 2764949 2765480 -48748104 - MER34 LTR ERV1 -3 539 1 24 0 0 0 chrY 2765976 2766000 -48747584 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrY 2766965 2766986 -48746598 + AT_rich Low_complexity Low_complexity 1 21 0 636 50 0 0 chrY 2767035 2767115 -48746469 + (TA)n Simple_repeat Simple_repeat 2 81 0 2290 87 0 10 chrY 2767115 2767414 -48746170 - AluY SINE Alu -15 296 1 2318 94 0 0 chrY 2767550 2767859 -48745725 - AluSg1 SINE Alu 0 309 1 180 0 0 0 chrY 2768677 2768697 -48744887 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chrY 2769810 2769837 -48743747 + AT_rich Low_complexity Low_complexity 1 27 0 2112 165 8 14 chrY 2770475 2770832 -48742752 - MLT1A1 LTR MaLR 0 365 11 5287 187 164 47 chrY 2770927 2772428 -48741156 + MER52A LTR ERV1 1 1755 0 206 136 23 0 chrY 2772843 2772887 -48740697 + (TG)n Simple_repeat Simple_repeat 1 45 0 442 283 128 21 chrY 2773958 2774145 -48739439 + L3 LINE CR1 1133 1339 -238 327 25 0 0 chrY 2774888 2774928 -48738656 + (CA)n Simple_repeat Simple_repeat 1 40 0 2341 103 0 0 chrY 2775129 2775439 -48738145 + AluSg SINE Alu 1 310 0 1122 215 4 21 chrY 2776692 2776934 -48736650 + MER58B DNA MER1_type 103 340 -1 7102 54 9 0 chrY 2777011 2777985 -48735599 - L1PA7 LINE L1 0 6154 5176 5131 82 10 1 chrY 2778078 2778763 -48734821 - LTR8 LTR ERV1 0 691 1 1589 164 52 4 chrY 2779237 2779539 -48734045 + AluJb SINE Alu 1 315 0 769 294 44 63 chrY 2780114 2780543 -48733041 - MLT1G LTR MaLR 0 590 170 21 36 0 0 chrY 2780749 2780777 -48732807 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chrY 2781942 2781999 -48731585 + AT_rich Low_complexity Low_complexity 1 57 0 273 29 0 0 chrY 2784048 2784082 -48729502 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chrY 2784718 2784739 -48728845 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrY 2785941 2785991 -48727593 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chrY 2787245 2787285 -48726299 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrY 2788452 2788481 -48725103 + AT_rich Low_complexity Low_complexity 1 29 0 391 256 58 29 chrY 2789126 2789271 -48724313 + MIR3 SINE MIR 55 188 -27 307 278 0 0 chrY 2789317 2789389 -48724195 - MIR3 SINE MIR -17 191 120 2122 109 10 13 chrY 2790231 2790535 -48723049 + AluSx SINE Alu 1 303 -9 472 60 24 119 chrY 2791141 2791225 -48722359 - AluSg/x SINE Alu -20 290 215 587 295 36 6 chrY 2792347 2792513 -48721071 + MIR SINE MIR 34 204 -58 2373 67 0 3 chrY 2792558 2792856 -48720728 + AluY SINE Alu 1 297 -14 355 226 32 32 chrY 2792937 2793030 -48720554 - MER5A DNA MER1_type -88 101 9 2279 60 0 11 chrY 2793383 2793695 -48719889 - AluY SINE Alu 0 309 1 3474 184 26 4 chrY 2795787 2796490 -48717094 + L1P LINE L1 4492 5209 -937 291 28 0 0 chrY 2796982 2797018 -48716566 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 330 316 33 13 chrY 2798730 2798882 -48714702 + MIR SINE MIR 84 238 -24 2554 47 0 0 chrY 2799471 2799770 -48713814 + AluY SINE Alu 1 299 -12 461 267 87 65 chrY 2799817 2800155 -48713429 - L1MC4a LINE L1 -171 5950 5603 1990 118 13 25 chrY 2800294 2800608 -48712976 + AluSq SINE Alu 1 310 -3 353 303 106 24 chrY 2800744 2801041 -48712543 - L1ME3A LINE L1 -245 5925 5605 348 279 118 38 chrY 2801053 2801376 -48712208 - L1ME3A LINE L1 -748 5398 5189 350 333 12 0 chrY 2801393 2801511 -48712073 - L1MC4a LINE L1 -532 5589 5483 2232 103 3 0 chrY 2801527 2801828 -48711756 - AluSg SINE Alu -3 307 6 2328 86 0 13 chrY 2802220 2802535 -48711049 - AluY SINE Alu 0 311 1 24 0 0 0 chrY 2804344 2804368 -48709216 + AT_rich Low_complexity Low_complexity 1 24 0 3299 70 13 15 chrY 2804927 2805385 -48708199 - L1PA8 LINE L1 -13 6159 5703 480 214 0 22 chrY 2805535 2805717 -48707867 + GA-rich Low_complexity Low_complexity 3 180 0 225 0 0 0 chrY 2806307 2806332 -48707252 + (TG)n Simple_repeat Simple_repeat 2 26 0 982 75 14 0 chrY 2806581 2806728 -48706856 - L1PBa LINE L1 -6692 171 23 432 159 11 119 chrY 2806743 2806919 -48706665 - L1MCa LINE L1 -5226 1200 1044 3872 184 17 17 chrY 2807109 2807831 -48705753 - MER72 LTR ERV1 0 722 1 350 320 40 0 chrY 2807962 2808087 -48705497 - MIR SINE MIR -72 190 61 22 106 0 0 chrY 2809389 2809474 -48704110 + AT_rich Low_complexity Low_complexity 1 85 0 186 143 0 0 chrY 2809577 2809612 -48703972 + (TG)n Simple_repeat Simple_repeat 2 36 0 2116 105 29 9 chrY 2809650 2809993 -48703591 + L1MA1 LINE L1 5953 6302 0 749 215 6 0 chrY 2810100 2810277 -48703307 + L1MA4 LINE L1 6121 6298 -2 198 171 0 0 chrY 2811317 2811358 -48702226 + T-rich Low_complexity Low_complexity 1 41 0 225 222 28 0 chrY 2812045 2812117 -48701467 - L1MDa LINE L1 -2930 3610 3537 839 210 6 12 chrY 2812117 2812279 -48701305 - FRAM SINE Alu -19 157 1 473 236 149 8 chrY 2812282 2812523 -48701061 - L1MDa LINE L1 -3007 3533 3259 * 803 215 37 12 chrY 2812516 2812762 -48700822 - L1MDa LINE L1 -3623 2917 2666 225 108 0 0 chrY 2812774 2812811 -48700773 + (T)n Simple_repeat Simple_repeat 1 37 0 704 213 8 0 chrY 2812814 2812941 -48700643 - FLAM_A SINE Alu -5 128 1 1502 245 80 95 chrY 2813040 2813194 -48700390 - L1MDa LINE L1 -3936 2604 2449 2387 73 3 0 chrY 2813194 2813495 -48700089 - AluY SINE Alu -9 302 1 1502 245 80 95 chrY 2813495 2814592 -48698992 - L1MDa LINE L1 -4091 2449 1372 705 120 128 0 chrY 2814636 2814761 -48698823 - L1PA15 LINE L1 -2 6163 6023 3343 166 92 6 chrY 2814761 2815413 -48698171 - L1PA8A LINE L1 -170 5961 5254 233 213 40 0 chrY 2815420 2815495 -48698089 - L1MDa LINE L1 -5185 1355 1278 192 77 0 0 chrY 2815579 2815605 -48697979 + (T)n Simple_repeat Simple_repeat 1 26 0 5858 153 18 14 chrY 2815608 2816261 -48697323 - L1PB1 LINE L1 -3 6148 5499 199 70 23 23 chrY 2816261 2816304 -48697280 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2271 70 0 7 chrY 2816304 2816590 -48696994 - AluY SINE Alu -27 284 1 5858 153 18 14 chrY 2816590 2817597 -48695987 - L1PB1 LINE L1 -651 5500 4472 255 281 23 31 chrY 2818156 2818284 -48695300 - L1MDa LINE L1 -5882 648 522 559 302 132 5 chrY 2818331 2818543 -48695041 - LTR50 LTR ERVL -271 524 286 2332 290 43 44 chrY 2818584 2819522 -48694062 - L2 LINE L2 -569 2745 1809 257 400 17 0 chrY 2820242 2820357 -48693227 - MIR3 SINE MIR -31 177 61 293 274 0 14 chrY 2820447 2820520 -48693064 + CT-rich Low_complexity Low_complexity 2 73 0 305 377 7 7 chrY 2820899 2821037 -48692547 + MIR SINE MIR 40 177 -85 657 0 0 0 chrY 2822052 2822125 -48691459 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 21 36 0 0 chrY 2825840 2825868 -48687716 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrY 2826361 2826403 -48687181 + AT_rich Low_complexity Low_complexity 1 42 0 214 213 16 16 chrY 2827202 2827263 -48686321 + MIR SINE MIR 165 225 -37 378 74 0 0 chrY 2827610 2827664 -48685920 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 655 212 0 15 chrY 2828041 2828173 -48685411 - FRAM SINE Alu -15 161 32 880 118 0 8 chrY 2828211 2828338 -48685246 - THE1B LTR MaLR 0 364 239 3367 174 77 7 chrY 2828338 2829491 -48684093 + L1PA12 LINE L1 2393 3631 -3953 5714 123 14 3 chrY 2829491 2830480 -48683104 + L1PA14 LINE L1 5161 6161 0 1111 86 0 25 chrY 2830482 2830644 -48682940 + L1MA2 LINE L1 6143 6300 -4 1060 228 58 85 chrY 2831902 2832435 -48681149 + MER39 LTR ERV1 1 682 -25 265 261 15 0 chrY 2833202 2833267 -48680317 + CT-rich Low_complexity Low_complexity 2 67 0 7981 189 13 66 chrY 2833665 2833902 -48679682 - L1PA16 LINE L1 -4 6162 5914 2132 117 51 17 chrY 2833902 2834254 -48679330 + THE1B LTR MaLR 1 364 0 11001 107 13 5 chrY 2834254 2835822 -48677762 + THE1B-int LTR MaLR 1 1580 0 1869 151 98 21 chrY 2835822 2836160 -48677424 + THE1B LTR MaLR 1 364 0 7981 189 13 66 chrY 2836160 2838931 -48674653 - L1PA16 LINE L1 -249 5917 3319 234 328 132 35 chrY 2839072 2839383 -48674201 + L3b LINE CR1 1129 1469 -114 2203 130 14 27 chrY 2839850 2840219 -48673365 + THE1B LTR MaLR 1 364 0 10749 117 12 0 chrY 2840219 2841780 -48671804 + THE1B-int LTR MaLR 1 1580 0 2123 149 5 35 chrY 2841780 2842155 -48671429 + THE1B LTR MaLR 1 364 0 2854 16 0 0 chrY 2842844 2843161 -48670423 + AluYb8 SINE Alu 1 317 -1 282 263 50 10 chrY 2843372 2843471 -48670113 - MIR SINE MIR -117 145 43 439 275 215 25 chrY 2843552 2843752 -48669832 + MIR SINE MIR 2 239 -23 219 281 99 25 chrY 2845201 2845322 -48668262 - MER5B DNA MER1_type -48 130 1 189 0 0 0 chrY 2846287 2846308 -48667276 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 284 0 28 0 chrY 2846307 2846343 -48667241 + (TA)n Simple_repeat Simple_repeat 2 38 0 2213 92 0 3 chrY 2846344 2846636 -48666948 - AluSc SINE Alu -17 292 2 26 0 0 0 chrY 2846639 2846665 -48666919 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chrY 2847486 2847513 -48666071 + AT_rich Low_complexity Low_complexity 1 27 0 367 189 26 7 chrY 2848008 2848161 -48665423 + (TA)n Simple_repeat Simple_repeat 1 156 0 227 316 41 20 chrY 2848178 2848276 -48665308 + L2 LINE L2 3170 3269 -3 806 181 13 13 chrY 2849262 2849417 -48664167 - FRAM SINE Alu -16 160 6 21 0 0 0 chrY 2850366 2850387 -48663197 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chrY 2850873 2850913 -48662671 + AT_rich Low_complexity Low_complexity 1 40 0 28 71 0 0 chrY 2851439 2851495 -48662089 + AT_rich Low_complexity Low_complexity 1 56 0 4848 161 9 9 chrY 2852070 2852962 -48660622 - L1MA3 LINE L1 0 7724 6833 2128 199 37 25 chrY 2852965 2853452 -48660132 + L1 LINE L1 3964 4456 -1690 4856 167 23 3 chrY 2854860 2855778 -48657806 + L1 LINE L1 4441 5376 -770 391 309 36 30 chrY 2857342 2857507 -48656077 + MIR3 SINE MIR 43 208 0 2556 126 3 0 chrY 2858086 2858458 -48655126 + THE1C LTR MaLR 3 375 0 636 204 84 14 chrY 2858864 2859006 -48654578 + FRAM SINE Alu 10 161 -15 23 33 0 0 chrY 2859852 2859882 -48653702 + AT_rich Low_complexity Low_complexity 1 30 0 14934 184 23 35 chrY 2863241 2864950 -48648634 - L1MA3 LINE L1 -996 6569 4841 5845 113 17 35 chrY 2864950 2866943 -48646641 - L1PA13 LINE L1 0 6814 4836 14934 184 23 35 chrY 2866943 2869491 -48644093 - L1MA3 LINE L1 -2724 4841 2399 2334 130 17 8 chrY 2869491 2869852 -48643732 + THE1B LTR MaLR 1 364 0 14934 184 23 35 chrY 2869852 2871304 -48642280 - L1MA3 LINE L1 -5166 2399 931 12273 214 28 10 chrY 2871303 2871424 -48642160 - L1PA13 LINE L1 -2793 4004 3887 * 1628 159 49 85 chrY 2871424 2871813 -48641771 + THE1C LTR MaLR 1 375 0 12273 214 28 10 chrY 2871813 2874815 -48638769 - L1PA13 LINE L1 -2910 3887 773 259 44 44 0 chrY 2874815 2874860 -48638724 + (CA)n Simple_repeat Simple_repeat 1 47 0 12273 214 28 10 chrY 2874860 2875648 -48637936 - L1PA13 LINE L1 -6024 773 1 189 313 30 0 chrY 2875657 2875724 -48637860 + MIR SINE MIR 98 166 -96 23 54 0 0 chrY 2877249 2877286 -48636298 + AT_rich Low_complexity Low_complexity 1 37 0 1245 117 3 9 chrY 2877424 2877622 -48635962 + L1P5 LINE L1 5595 5791 -360 250 201 24 0 chrY 2877627 2877724 -48635860 + L1MC4 LINE L1 1995 6983 -1339 236 152 121 0 chrY 2877723 2877789 -48635795 + L1MC4 LINE L1 6920 6993 -1329 * 1238 141 0 0 chrY 2877780 2877972 -48635612 - L1P5 LINE L1 -523 5628 5437 2523 80 0 0 chrY 2877977 2878304 -48635280 + L1PB1 LINE L1 5782 6108 -43 23 0 0 0 chrY 2879732 2879755 -48633829 + AT_rich Low_complexity Low_complexity 1 23 0 1624 123 0 0 chrY 2880497 2880725 -48632859 - AluSg/x SINE Alu -4 306 79 208 267 33 0 chrY 2881031 2881091 -48632493 - L2 LINE L2 -4 3268 3207 822 152 30 0 chrY 2881423 2881555 -48632029 - FRAM SINE Alu -39 137 2 532 273 0 0 chrY 2881756 2881877 -48631707 + L2 LINE L2 3189 3309 -4 25 0 0 0 chrY 2882020 2882045 -48631539 + AT_rich Low_complexity Low_complexity 1 25 0 303 169 0 0 chrY 2883211 2883282 -48630302 + (TA)n Simple_repeat Simple_repeat 2 72 0 215 211 35 0 chrY 2883384 2883441 -48630143 + (TAA)n Simple_repeat Simple_repeat 3 61 0 1125 56 19 6 chrY 2884171 2884333 -48629251 + (GAAA)n Simple_repeat Simple_repeat 3 166 0 183 80 0 0 chrY 2884335 2884360 -48629224 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2071 211 15 19 chrY 2884968 2885321 -48628263 - L1MA9 LINE L1 -38 6274 5922 260 312 38 19 chrY 2885321 2885478 -48628106 - L1ME3A LINE L1 -244 5926 5767 31 0 0 0 chrY 2886502 2886533 -48627051 + AT_rich Low_complexity Low_complexity 1 31 0 42805 30 21 1 chrY 2886533 2892564 -48621020 - L1HS LINE L1 0 6155 1 686 127 59 0 chrY 2892859 2892977 -48620607 + L1MB1 LINE L1 6042 6166 -2 2191 107 3 3 chrY 2893232 2893530 -48620054 - AluSx SINE Alu -14 298 1 254 321 22 35 chrY 2894530 2894643 -48618941 - MIR SINE MIR -74 134 20 261 285 83 56 chrY 2895092 2895191 -48618393 - L1MA10 LINE L1 -4 6330 6224 2289 124 8 8 chrY 2895191 2895546 -48618038 - THE1A LTR MaLR 0 355 1 261 285 83 56 chrY 2895546 2895590 -48617994 - L1MA10 LINE L1 -110 6224 6183 824 202 54 34 chrY 2896559 2896944 -48616640 - MER31B LTR ERV1 0 466 3 376 257 143 0 chrY 2897008 2897113 -48616471 + L2 LINE L2 3145 3264 -8 31 26 0 0 chrY 2898477 2898515 -48615069 + AT_rich Low_complexity Low_complexity 1 38 0 1524 204 0 26 chrY 2899083 2899387 -48614197 + AluJb SINE Alu 3 298 -14 469 195 0 0 chrY 2899387 2899429 -48614155 + FLAM_C SINE Alu 3 348 0 13564 161 31 6 chrY 2900111 2902430 -48611154 + L1PA11 LINE L1 2820 5230 -944 279 0 0 0 chrY 2902430 2902461 -48611123 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13564 161 31 6 chrY 2902461 2903426 -48610158 + L1PA11 LINE L1 5230 6169 -5 8320 190 30 68 chrY 2903664 2906994 -48606590 - L1PA15 LINE L1 -13 6152 2928 2030 117 7 10 chrY 2907366 2907657 -48605927 - AluSx SINE Alu -20 292 3 394 176 0 0 chrY 2907664 2907738 -48605846 + Tigger7 DNA MER2_type 2457 2530 -57 1885 126 61 0 chrY 2907754 2908048 -48605536 - AluSq SINE Alu -1 312 1 23 78 0 0 chrY 2908154 2908205 -48605379 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chrY 2908321 2908358 -48605226 + AT_rich Low_complexity Low_complexity 1 37 0 796 284 66 8 chrY 2912305 2912548 -48601036 + MIR SINE MIR 2 258 -4 2546 191 111 15 chrY 2913270 2913863 -48599721 - L1MB8 LINE L1 -1 6177 5528 2126 93 0 3 chrY 2913989 2914278 -48599306 + AluSx SINE Alu 11 298 -14 2549 55 0 0 chrY 2914297 2914607 -48598977 + AluY SINE Alu 1 310 -1 306 0 0 0 chrY 2915151 2915185 -48598399 + (TG)n Simple_repeat Simple_repeat 1 34 0 2241 74 0 3 chrY 2918286 2918593 -48594991 - AluY SINE Alu 0 334 29 365 275 150 31 chrY 2918601 2918761 -48594823 + MIR SINE MIR 53 231 -31 240 301 41 0 chrY 2918756 2918829 -48594755 - MIR SINE MIR -127 135 60 * 13304 137 22 62 chrY 2919708 2922226 -48591358 - Tigger1 DNA MER2_type -1 2417 1 248 305 75 70 chrY 2922237 2922450 -48591134 - MIR SINE MIR -15 247 34 22 0 0 0 chrY 2922894 2922916 -48590668 + AT_rich Low_complexity Low_complexity 1 22 0 186 344 75 25 chrY 2923253 2923413 -48590171 - L3b LINE CR1 -105 1478 1311 2270 109 0 0 chrY 2924918 2925221 -48588363 + AluSq SINE Alu 3 305 -8 6734 125 6 1 chrY 2925928 2927009 -48586575 + L1MA1 LINE L1 5216 6301 -1 2253 97 3 7 chrY 2927862 2928172 -48585412 - AluSp SINE Alu -4 309 1 2015 153 22 27 chrY 2932293 2932659 -48580925 - THE1B LTR MaLR 0 364 1 456 337 55 10 chrY 2932947 2933149 -48580435 - L2 LINE L2 -252 3061 2851 185 304 0 0 chrY 2933229 2933285 -48580299 - L2 LINE L2 -152 3161 3106 8618 76 2 28 chrY 2933285 2934525 -48579059 + L1P LINE L1 830 2036 -4110 4428 133 21 0 chrY 2934525 2935233 -48578351 + L1PA13 LINE L1 5422 6144 -19 2129 169 5 36 chrY 2935610 2936029 -48577555 - L1PA13 LINE L1 -4641 2146 1741 1072 166 0 24 chrY 2936028 2936239 -48577345 - L1M1 LINE L1 -632 7092 6887 * 1419 149 5 0 chrY 2936241 2936462 -48577122 - AluJb SINE Alu -6 306 85 1235 206 5 12 chrY 2936462 2936892 -48576692 - L1M1 LINE L1 -745 6820 6472 2244 181 17 15 chrY 2936893 2937364 -48576220 + L1 LINE L1 4430 4901 -1245 1076 181 5 9 chrY 2937363 2937578 -48576006 - L1M1 LINE L1 -1777 5788 5575 * 3978 188 35 6 chrY 2937590 2941223 -48572361 - L1M1 LINE L1 -3641 3924 11 1631 96 32 0 chrY 2941328 2941548 -48572036 + AluSg/x SINE Alu 71 297 -13 21 0 0 0 chrY 2941661 2941682 -48571902 + AT_rich Low_complexity Low_complexity 1 21 0 1092 113 12 0 chrY 2943204 2943364 -48570220 + AluSg/x SINE Alu 130 291 -19 1975 138 3 0 chrY 2944961 2945266 -48568318 - AluSx SINE Alu -6 306 1 333 363 32 8 chrY 2945706 2945830 -48567754 - MIR3 SINE MIR -30 178 52 237 222 0 0 chrY 2947067 2947130 -48566454 + CT-rich Low_complexity Low_complexity 2 64 0 904 182 0 0 chrY 2947301 2947471 -48566113 - AluSg/x SINE Alu 0 312 143 180 0 0 0 chrY 2947473 2947493 -48566091 + (TA)n Simple_repeat Simple_repeat 1 20 0 1646 177 13 3 chrY 2947759 2948059 -48565525 - AluJb SINE Alu -9 303 1 29 28 0 0 chrY 2948423 2948459 -48565125 + AT_rich Low_complexity Low_complexity 1 36 0 219 175 25 0 chrY 2948772 2948812 -48564772 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 2447 159 20 0 chrY 2949402 2949843 -48563741 - L1MA5 LINE L1 -6 6294 5845 10311 175 30 7 chrY 2950029 2952578 -48561006 - L1MA2 LINE L1 0 7723 5076 180 0 0 0 chrY 2952578 2952598 -48560986 + (TG)n Simple_repeat Simple_repeat 2 21 0 10311 175 30 7 chrY 2952598 2953337 -48560247 - L1MA2 LINE L1 -2647 5076 4356 235 182 0 0 chrY 2953336 2953380 -48560204 - L1MA2 LINE L1 -7508 57 14 * 34 24 0 0 chrY 2953945 2953986 -48559598 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrY 2954168 2954200 -48559384 + AT_rich Low_complexity Low_complexity 1 32 0 180 361 74 8 chrY 2954564 2954686 -48558898 + L2 LINE L2 3181 3310 -3 341 324 9 9 chrY 2954688 2954796 -48558788 - MIR3 SINE MIR -16 192 85 2189 157 22 3 chrY 2955395 2955758 -48557826 - THE1C LTR MaLR 0 375 6 8846 146 34 46 chrY 2955763 2957362 -48556222 - THE1C-int LTR MaLR 0 1580 1 2163 163 22 3 chrY 2957362 2957730 -48555854 - THE1C LTR MaLR 0 375 1 21 36 0 0 chrY 2958517 2958545 -48555039 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 2958565 2958588 -48554996 + AT_rich Low_complexity Low_complexity 1 23 0 12557 201 84 5 chrY 2958919 2959005 -48554579 + L1MA2 LINE L1 11 89 -7476 180 0 0 0 chrY 2959005 2959025 -48554559 + (CA)n Simple_repeat Simple_repeat 2 21 0 12557 201 84 5 chrY 2959025 2961497 -48552087 + L1MA2 LINE L1 89 2772 -4793 2531 179 5 0 chrY 2961497 2961905 -48551679 - MSTA LTR MaLR 0 428 19 782 157 0 8 chrY 2961914 2962048 -48551536 - MSTA-int LTR MaLR 0 1651 1519 * 3269 164 2 2 chrY 2962045 2962601 -48550983 - MSTA-int LTR MaLR -1088 563 8 351 0 0 0 chrY 2962604 2962643 -48550941 + (T)n Simple_repeat Simple_repeat 1 39 0 2223 188 5 5 chrY 2962645 2963043 -48550541 - MSTA LTR MaLR -30 398 1 2467 130 20 0 chrY 2963043 2963450 -48550134 + L1MA2 LINE L1 2768 3182 -4383 6144 168 10 10 chrY 2963454 2965499 -48548085 + L1MA2 LINE L1 5677 7723 0 22 35 0 0 chrY 2965808 2965837 -48547747 + AT_rich Low_complexity Low_complexity 1 29 0 5087 133 6 4 chrY 2966503 2967313 -48546271 - L1P LINE L1 -1322 4824 4013 1914 88 4 0 chrY 2967313 2967571 -48546013 + L1PA11 LINE L1 5912 6173 -1 2346 66 3 7 chrY 2967686 2967987 -48545597 + AluY SINE Alu 1 300 -11 21 0 0 0 chrY 2968638 2968659 -48544925 + AT_rich Low_complexity Low_complexity 1 21 0 385 262 49 71 chrY 2968689 2968872 -48544712 + MIR SINE MIR 13 191 -71 375 167 78 0 chrY 2969134 2969224 -48544360 - L1ME4a LINE L1 -237 5884 5788 2374 92 0 0 chrY 2969282 2969585 -48543999 + AluSg SINE Alu 1 303 -7 47 67 0 0 chrY 2970889 2970978 -48542606 + AT_rich Low_complexity Low_complexity 1 89 0 2072 127 0 0 chrY 2972148 2972453 -48541131 + AluSx SINE Alu 1 305 0 297 291 149 0 chrY 2972677 2972811 -48540773 + MIR3 SINE MIR 32 185 -23 42 86 0 0 chrY 2974887 2974992 -48538592 + AT_rich Low_complexity Low_complexity 1 105 0 297 0 0 0 chrY 2975441 2975474 -48538110 + (CA)n Simple_repeat Simple_repeat 2 34 0 3293 188 23 26 chrY 2975488 2976463 -48537121 - L1 LINE L1 -3663 3902 2934 12585 217 26 40 chrY 2976473 2977583 -48536001 - L1PA12 LINE L1 -2491 5093 3970 1718 71 0 0 chrY 2977583 2977807 -48535777 + L1PA7 LINE L1 5931 6154 0 12585 217 26 40 chrY 2977807 2980512 -48533072 - L1M4 LINE L1 -3614 3970 1 2218 268 47 30 chrY 2980512 2980717 -48532867 + L1M4 LINE L1 3971 4171 -3413 2105 144 33 25 chrY 2980717 2981078 -48532506 + THE1B LTR MaLR 1 364 0 10882 118 13 9 chrY 2981078 2982533 -48531051 + THE1B-int LTR MaLR 1 1464 -116 2235 105 0 3 chrY 2982533 2982829 -48530755 - AluSx SINE Alu -17 295 1 10882 118 13 9 chrY 2982829 2982947 -48530637 + THE1B-int LTR MaLR 1464 1580 0 1951 144 42 33 chrY 2982948 2983308 -48530276 + THE1B LTR MaLR 2 364 0 2218 268 47 30 chrY 2983308 2984200 -48529384 + L1M4 LINE L1 4170 5090 -2494 1485 136 9 0 chrY 2984200 2984421 -48529163 - AluSp SINE Alu 0 313 91 1686 176 84 6 chrY 2984422 2984745 -48528839 - MSTA LTR MaLR -80 348 1 2560 55 3 0 chrY 2984785 2985093 -48528491 - AluY SINE Alu -2 309 1 30 0 0 0 chrY 2987647 2987677 -48525907 + AT_rich Low_complexity Low_complexity 1 30 0 244 148 0 33 chrY 2987798 2987859 -48525725 + L1MC4 LINE L1 6640 6698 -1344 * 6239 132 26 39 chrY 2987858 2989078 -48524506 + L1M1 LINE L1 2263 3467 -4098 2963 178 77 27 chrY 2989078 2989771 -48523813 + LTR8A LTR ERV1 1 727 0 544 258 85 42 chrY 2989771 2990051 -48523533 + HUERS-P1 LTR ERV1 1 387 -5876 4144 179 96 62 chrY 2990104 2991249 -48522335 + HUERS-P1 LTR ERV1 3 1624 -4639 * 11004 152 39 36 chrY 2991246 2991873 -48521711 + HUERS-P1 LTR ERV1 768 1392 -4932 2124 112 0 0 chrY 2991873 2992160 -48521424 + AluY SINE Alu 1 287 -24 11004 152 39 36 chrY 2992160 2995207 -48518377 + HUERS-P1 LTR ERV1 1392 5790 -534 1105 169 63 82 chrY 2995229 2995548 -48518036 + HUERS-P1 LTR ERV1 5914 6226 -105 812 255 111 16 chrY 2995553 2995796 -48517788 + HUERS-P1 LTR ERV1 5994 6259 -4 265 143 0 0 chrY 2995798 2995847 -48517737 + LTR8A LTR ERV1 1 49 -678 8443 182 23 15 chrY 2995849 2998720 -48514864 + L1MA2 LINE L1 3359 6263 -41 2203 140 34 3 chrY 2998720 2999070 -48514514 + THE1B LTR MaLR 1 361 -3 9710 125 32 32 chrY 2999073 3000653 -48512931 + THE1B-int LTR MaLR 1 1580 0 1095 134 0 0 chrY 3000653 3000810 -48512774 + THE1B LTR MaLR 1 157 -207 1156 198 16 43 chrY 3000829 3001087 -48512497 + L1M3 LINE L1 5503 5753 -430 * 4547 252 50 49 chrY 3001082 3003422 -48510162 + L1MB7 LINE L1 119 2584 -4373 25 0 0 0 chrY 3003593 3003618 -48509966 + AT_rich Low_complexity Low_complexity 1 25 0 233 195 0 0 chrY 3003833 3003874 -48509710 + (CA)n Simple_repeat Simple_repeat 2 42 0 2178 258 72 7 chrY 3003916 3004766 -48508818 + L1MB7 LINE L1 2874 3741 -3216 * 3181 246 103 25 chrY 3004760 3005357 -48508227 + L1MB7 LINE L1 4844 5394 -1601 2205 82 28 3 chrY 3005357 3005648 -48507936 + AluSp SINE Alu 1 298 -15 3181 246 103 25 chrY 3005648 3007027 -48506557 + L1MB7 LINE L1 5394 6986 -9 22 0 0 0 chrY 3007505 3007527 -48506057 + AT_rich Low_complexity Low_complexity 1 22 0 2434 281 38 19 chrY 3008150 3008999 -48504585 - L1ME1 LINE L1 -19 6147 5283 11745 208 81 15 chrY 3009006 3012932 -48500652 - L1PA16 LINE L1 -3 6866 2346 225 0 0 0 chrY 3012932 3012957 -48500627 + (TG)n Simple_repeat Simple_repeat 2 26 0 11745 208 81 15 chrY 3012957 3015469 -48498115 - L1PA16 LINE L1 -4523 2346 2 2386 260 27 22 chrY 3015499 3016346 -48497238 - L1ME1 LINE L1 -886 5260 4410 714 268 70 8 chrY 3016347 3016590 -48496994 - L1ME1 LINE L1 -1932 4214 3957 868 270 58 6 chrY 3016597 3016942 -48496642 - L1ME1 LINE L1 -3489 2657 2295 24 0 0 0 chrY 3017592 3017616 -48495968 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chrY 3020140 3020166 -48493418 + AT_rich Low_complexity Low_complexity 1 26 0 339 85 0 0 chrY 3020490 3020537 -48493047 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 190 0 63 chrY 3021835 3021914 -48491670 + T-rich Low_complexity Low_complexity 2 75 0 22 0 0 0 chrY 3022552 3022574 -48491010 + AT_rich Low_complexity Low_complexity 1 22 0 2241 173 32 28 chrY 3023963 3024430 -48489154 - L1MC3 LINE L1 -21 7764 7296 1827 198 25 3 chrY 3024925 3025283 -48488301 + MLT2D LTR ERVL 1 366 -48 498 183 15 26 chrY 3025283 3025560 -48488024 + CT-rich Low_complexity Low_complexity 1 274 0 253 343 56 14 chrY 3025725 3025868 -48487716 + MIR SINE MIR 2 150 -112 1594 240 22 3 chrY 3026137 3026495 -48487089 - MLT1A1 LTR MaLR 0 365 1 7267 239 37 11 chrY 3026496 3028186 -48485398 - MLT1A1-int LTR MaLR -1 1734 1 1683 209 44 3 chrY 3028193 3028537 -48485047 - MLT1A1 LTR MaLR -7 358 1 478 272 28 65 chrY 3028769 3028986 -48484598 - L2 LINE L2 -1 3312 3104 288 252 52 35 chrY 3029014 3029129 -48484455 - MLT1L LTR MaLR 0 615 499 432 294 156 9 chrY 3029214 3029425 -48484159 - MLT1L LTR MaLR -228 387 146 186 346 93 9 chrY 3029537 3029644 -48483940 - L2 LINE L2 -1234 2080 1965 1856 299 63 14 chrY 3029650 3030464 -48483120 + L2 LINE L2 1215 2113 -1201 3995 213 18 13 chrY 3030493 3030821 -48482763 - L1MB7 LINE L1 -21 6163 5838 9027 109 13 0 chrY 3030821 3032092 -48481492 - HSMAR1 DNA Mariner 0 1287 1 3995 213 18 13 chrY 3032092 3032248 -48481336 - L1MB7 LINE L1 -346 5838 5684 1514 208 3 13 chrY 3032248 3032574 -48481010 + AluJb SINE Alu 1 312 0 3995 213 18 13 chrY 3032574 3033138 -48480446 - L1MB7 LINE L1 -500 5684 5107 1307 220 70 55 chrY 3033140 3033587 -48479997 - L1MB7 LINE L1 -1447 4699 4241 288 53 0 0 chrY 3033587 3033625 -48479959 + (TG)n Simple_repeat Simple_repeat 2 39 0 1307 220 70 55 chrY 3033625 3033705 -48479879 - L1MB7 LINE L1 -1905 4241 4164 1631 185 20 57 chrY 3033721 3034126 -48479458 - MLT1B LTR MaLR 0 390 1 5237 233 19 39 chrY 3034126 3034971 -48478613 - L1M4c LINE L1 -1844 5113 4310 261 0 0 0 chrY 3034971 3035000 -48478584 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5237 233 19 39 chrY 3035000 3035692 -48477892 - L1M4c LINE L1 -2647 4310 3606 4635 146 39 3 chrY 3035708 3036813 -48476771 + L1PA12 LINE L1 4903 6040 -128 2096 121 71 6 chrY 3036813 3037153 -48476431 + THE1B LTR MaLR 1 362 -2 6121 118 7 4 chrY 3037155 3038054 -48475530 + THE1B-int LTR MaLR 1 901 -679 930 191 48 48 chrY 3038056 3038266 -48475318 + THE1B LTR MaLR 153 362 -2 835 63 18 0 chrY 3038268 3038379 -48475205 + L1PA13 LINE L1 6036 6148 -15 23 68 0 0 chrY 3038403 3038447 -48475137 + AT_rich Low_complexity Low_complexity 1 44 0 4759 265 39 22 chrY 3038457 3042717 -48470867 - L1PBa LINE L1 -3387 3475 27 516 282 64 32 chrY 3042757 3043197 -48470387 - L1M4c LINE L1 -4099 3039 2586 956 275 57 51 chrY 3043347 3043609 -48469975 - L1M4c LINE L1 -4452 2686 2427 2119 109 0 23 chrY 3043609 3043912 -48469672 - AluSp SINE Alu -17 296 1 956 275 57 51 chrY 3043912 3044274 -48469310 - L1M4c LINE L1 -4711 2427 1907 * 3594 291 34 14 chrY 3044272 3045321 -48468263 - L1M4c LINE L1 -5782 1077 8 4373 168 37 28 chrY 3045577 3045859 -48467725 + L1MA5 LINE L1 4728 5006 -1294 800 235 0 25 chrY 3045859 3046021 -48467563 + FAM SINE Alu 1 158 -17 4373 168 37 28 chrY 3046021 3047133 -48466451 + L1MA5 LINE L1 5006 6119 -181 1081 191 106 50 chrY 3047135 3047554 -48466030 + LTR22 LTR ERVK 1 509 0 2029 128 0 0 chrY 3047554 3047874 -48465710 - AluY SINE Alu 0 320 1 998 144 39 0 chrY 3047874 3048054 -48465530 + L1MA5 LINE L1 6108 6294 -6 4684 204 28 26 chrY 3048299 3049574 -48464010 - L1MA10 LINE L1 -14 6320 5038 269 305 104 36 chrY 3049721 3050134 -48463450 + L1 LINE L1 3718 4158 -1988 382 304 96 30 chrY 3050277 3050507 -48463077 + L1 LINE L1 4311 4555 -1591 6224 68 2 0 chrY 3050600 3051400 -48462184 - L1PA8 LINE L1 -5 6167 5366 1768 102 0 4 chrY 3051397 3051662 -48461922 + L1PA8 LINE L1 5076 5339 -807 * 953 259 124 45 chrY 3051854 3052321 -48461263 - MLT1J LTR MaLR -7 504 1 205 194 0 0 chrY 3052361 3052397 -48461187 - MER5A DNA MER1_type 0 189 154 1591 236 67 8 chrY 3052400 3052761 -48460823 + MLT1E LTR MaLR 206 587 -6 402 285 5 113 chrY 3053047 3053268 -48460316 - MER3 DNA MER1_type 0 209 13 932 276 114 52 chrY 3053572 3054036 -48459548 + HsTC2a DNA Tc2 3 495 -249 849 206 0 0 chrY 3054045 3054186 -48459398 - FRAM SINE Alu -23 153 13 560 209 118 14 chrY 3054194 3054405 -48459179 + HsTC2a DNA Tc2 499 731 -11 264 258 0 22 chrY 3054417 3054506 -48459078 + (TAA)n Simple_repeat Simple_repeat 3 89 0 28 29 0 0 chrY 3055080 3055115 -48458469 + AT_rich Low_complexity Low_complexity 1 35 0 555 305 79 41 chrY 3055121 3055515 -48458069 + MLT1H1 LTR MaLR 1 409 -146 2486 168 34 6 chrY 3055630 3056130 -48457454 + L1MA3 LINE L1 5786 6299 -6 480 282 84 19 chrY 3056343 3056516 -48457068 + L1MC4 LINE L1 7446 7637 -405 1705 197 28 17 chrY 3056516 3056877 -48456707 - MLT1A1 LTR MaLR 0 365 1 480 282 84 19 chrY 3056877 3056916 -48456668 + L1MC4 LINE L1 7637 7672 -370 676 211 66 13 chrY 3056931 3057083 -48456501 + MER31B LTR ERV1 1 160 -306 3769 182 68 73 chrY 3057127 3058046 -48455538 + MER21A LTR ERV1 1 914 -17 611 237 58 48 chrY 3058077 3058284 -48455300 + MER31B LTR ERV1 254 462 -4 23 0 0 0 chrY 3058430 3058453 -48455131 + AT_rich Low_complexity Low_complexity 1 23 0 210 128 0 0 chrY 3058497 3058536 -48455048 + (TG)n Simple_repeat Simple_repeat 2 40 0 852 257 29 86 chrY 3058773 3059147 -48454437 - HsTC2c DNA Tc2 -3 726 374 391 245 0 0 chrY 3059289 3059383 -48454201 + L1 LINE L1 5203 5296 -850 189 0 0 0 chrY 3059383 3059404 -48454180 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4143 143 18 83 chrY 3059407 3060300 -48453284 + L1PA6 LINE L1 5309 6143 -11 207 0 0 0 chrY 3060303 3060326 -48453258 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 409 304 82 62 chrY 3060492 3060735 -48452849 - MLT1G1 LTR MaLR -185 410 163 358 285 78 43 chrY 3060951 3061411 -48452173 + L1 LINE L1 4759 5234 -912 266 344 8 8 chrY 3061680 3061802 -48451782 + CT-rich Low_complexity Low_complexity 1 122 0 4519 273 32 21 chrY 3061917 3062905 -48450679 + L1PBa LINE L1 7 1064 -5799 408 20 0 0 chrY 3062905 3062954 -48450630 + (CA)n Simple_repeat Simple_repeat 2 50 0 4519 273 32 21 chrY 3062954 3063526 -48450058 + L1PBa LINE L1 1064 1628 -5235 * 4522 199 64 10 chrY 3063502 3064441 -48449143 + L1PA15 LINE L1 660 1649 -5214 33 25 0 0 chrY 3064442 3064482 -48449102 + AT_rich Low_complexity Low_complexity 1 40 0 7037 214 26 82 chrY 3064482 3066098 -48447486 + L1PA15 LINE L1 1952 3656 -3206 800 204 34 0 chrY 3066098 3066245 -48447339 + AluSp SINE Alu 132 283 -30 180 0 0 0 chrY 3066248 3066268 -48447316 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7037 214 26 82 chrY 3066268 3067619 -48445965 + L1PA15 LINE L1 3658 4982 -1880 2870 283 58 9 chrY 3067607 3068962 -48444622 + L1M4 LINE L1 2367 3788 -2358 * 5153 192 10 9 chrY 3069055 3070506 -48443078 + L1PA15 LINE L1 5068 6520 -361 585 88 0 0 chrY 3070506 3070586 -48442998 - MADE1 DNA Mariner 0 80 1 5153 192 10 9 chrY 3070586 3070926 -48442658 + L1PA15 LINE L1 6520 6858 -23 243 0 0 0 chrY 3070933 3070960 -48442624 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 559 244 81 11 chrY 3070962 3071265 -48442319 + MSTD LTR MaLR 32 396 0 1493 218 64 8 chrY 3071334 3071692 -48441892 + MSTB1 LTR MaLR 3 380 -52 1739 270 20 30 chrY 3071701 3072027 -48441557 - L1 LINE L1 -3381 2765 2446 528 16 0 0 chrY 3072027 3072088 -48441496 + (TA)n Simple_repeat Simple_repeat 1 61 0 1739 270 20 30 chrY 3072088 3072361 -48441223 - L1 LINE L1 -3700 2446 2172 6207 152 12 3 chrY 3072371 3073613 -48439971 - L1MA1 LINE L1 -7 7714 6461 7027 200 28 20 chrY 3074162 3074241 -48439343 - L1MA1 LINE L1 -1097 6468 6391 1654 150 48 58 chrY 3074241 3074620 -48438964 - THE1C LTR MaLR 0 375 1 7027 200 28 20 chrY 3074620 3076202 -48437382 - L1MA1 LINE L1 -1174 6391 4793 * 18062 197 24 20 chrY 3076200 3078780 -48434804 - L1MA1 LINE L1 -3198 4367 1759 183 42 0 0 chrY 3078780 3078804 -48434780 + (TC)n Simple_repeat Simple_repeat 1 24 0 18062 197 24 20 chrY 3078804 3080509 -48433075 - L1MA1 LINE L1 -5806 1759 63 391 186 30 46 chrY 3080509 3080627 -48432957 + MSTB1 LTR MaLR 249 432 0 187 255 78 98 chrY 3082160 3082262 -48431322 + MIR SINE MIR 137 236 -26 283 288 12 12 chrY 3082949 3083029 -48430555 + HAL1 LINE L1 757 836 -1671 300 281 42 10 chrY 3083103 3083199 -48430385 + L1MEc LINE L1 380 478 -5918 1365 285 41 32 chrY 3083227 3083728 -48429856 + L1MEc LINE L1 46 599 -5797 2291 98 0 7 chrY 3083728 3084033 -48429551 - AluSq SINE Alu -8 305 3 1365 285 41 32 chrY 3084033 3084210 -48429374 + L1MEc LINE L1 599 773 -5623 362 251 181 17 chrY 3084231 3084518 -48429066 + L1MEc LINE L1 980 1313 -5083 1246 256 89 32 chrY 3084544 3085020 -48428564 - LTR40b LTR ERVL 0 462 3 619 215 7 20 chrY 3085020 3085168 -48428416 - MER3 DNA MER1_type -51 158 13 350 325 40 8 chrY 3085211 3085337 -48428247 - MIR SINE MIR -76 186 57 729 280 144 89 chrY 3085375 3085475 -48428109 + MLT1G1 LTR MaLR 1 94 -501 1611 104 27 5 chrY 3085475 3085695 -48427889 + AluSg SINE Alu 1 225 -85 729 280 144 89 chrY 3085695 3086158 -48427426 + MLT1G1 LTR MaLR 94 595 0 2242 180 56 7 chrY 3087395 3087822 -48425762 + MER83 LTR ERV1 1 448 0 1387 183 23 12 chrY 3087822 3088079 -48425505 + MER83-int LTR ERV1 12 271 -4014 535 105 0 0 chrY 3088079 3088155 -48425429 + MSTA LTR MaLR 353 428 0 4084 123 63 11 chrY 3088155 3088804 -48424780 + MSTA-int LTR MaLR 1 683 -897 894 103 76 19 chrY 3088804 3088986 -48424598 + THE1C LTR MaLR 221 375 0 920 307 65 43 chrY 3089324 3089866 -48423718 - HUERS-P3 LTR ERV1 -1298 5231 4692 456 313 44 67 chrY 3090169 3090740 -48422844 - HUERS-P3 LTR ERV1 -1797 5294 3971 276 346 26 6 chrY 3090845 3091001 -48422583 - HUERS-P3 LTR ERV1 -4280 4639 4481 5116 126 7 0 chrY 3091030 3092148 -48421436 - THE1C-int LTR MaLR -413 1167 3 1942 144 87 17 chrY 3092150 3092496 -48421088 - THE1C LTR MaLR 0 375 6 23 0 0 0 chrY 3093228 3093251 -48420333 + AT_rich Low_complexity Low_complexity 1 23 0 2098 185 28 3 chrY 3093296 3093686 -48419898 + MER50-int LTR ERV1 1927 2326 -1959 382 338 62 40 chrY 3094670 3095090 -48418494 + MER50-int LTR ERV1 6257 6685 -520 10931 211 34 59 chrY 3095278 3095711 -48417873 - L1M1 LINE L1 -5073 2492 2049 4702 107 58 69 chrY 3095711 3096542 -48417042 - LTR12 LTR ERV1 0 826 5 10931 211 34 59 chrY 3096542 3099139 -48414445 - L1M1 LINE L1 -5516 2049 17 323 85 34 0 chrY 3100201 3100260 -48413324 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 564 384 98 18 chrY 3101120 3101557 -48412027 - L2 LINE L2 -653 2661 2190 617 256 26 67 chrY 3101902 3102028 -48411556 + MIR SINE MIR 4 134 -128 388 0 0 0 chrY 3102028 3102071 -48411513 + (TTA)n Simple_repeat Simple_repeat 1 180 0 1733 168 4 0 chrY 3102071 3102351 -48411233 - AluJb SINE Alu -31 281 1 617 256 26 67 chrY 3102351 3102493 -48411091 + MIR SINE MIR 132 262 0 483 359 70 16 chrY 3103010 3103439 -48410145 - L2 LINE L2 -1195 2119 1668 2278 100 0 7 chrY 3103491 3103800 -48409784 + AluSg SINE Alu 1 307 -3 259 349 19 9 chrY 3105126 3105232 -48408352 - MIR SINE MIR -105 157 51 563 291 93 0 chrY 3105616 3105798 -48407786 + MLT1E3 LTR MaLR 1 199 -425 450 235 35 0 chrY 3105816 3105931 -48407653 - L1MA9 LINE L1 -22 6290 6172 891 212 35 0 chrY 3105935 3106133 -48407451 - L1MA9 LINE L1 -241 6071 5867 1379 239 68 24 chrY 3106168 3106548 -48407036 + MLT1E3 LTR MaLR 223 619 -5 1191 228 35 25 chrY 3106830 3107146 -48406438 - PABL_B LTR ERV1 0 667 349 295 336 34 39 chrY 3107159 3107367 -48406217 - PABL_B LTR ERV1 -460 207 1 941 243 16 78 chrY 3108028 3108477 -48405107 + L1MB4 LINE L1 609 1029 -5251 507 252 0 67 chrY 3108477 3108521 -48405063 + MER21B LTR ERV1 328 373 -490 2350 118 78 10 chrY 3108521 3108918 -48404666 - MSTA LTR MaLR 0 428 5 507 252 0 67 chrY 3108918 3108992 -48404592 + MER21B LTR ERV1 373 438 -425 2158 190 5 12 chrY 3109129 3109534 -48404050 + MER21B LTR ERV1 455 856 -7 1209 172 10 0 chrY 3109565 3109769 -48403815 + MER21B-int LTR ERV1 18 223 -3968 3079 146 36 9 chrY 3109769 3110366 -48403218 + MER4B LTR ERV1 1 779 0 2126 170 8 16 chrY 3110366 3110748 -48402836 + MER21B-int LTR ERV1 220 598 -3593 3436 154 11 75 chrY 3110748 3111486 -48402098 - LTR8 LTR ERV1 0 691 1 1313 211 13 0 chrY 3111486 3111723 -48401861 + MER21B-int LTR ERV1 1561 1800 -2391 3551 206 22 44 chrY 3111752 3112058 -48401526 + MER21B-int LTR ERV1 1644 1955 -2236 2154 145 47 28 chrY 3112058 3112486 -48401098 + LTR23 LTR ERV1 2 437 0 3551 206 22 44 chrY 3112486 3112994 -48400590 + MER21B-int LTR ERV1 1955 2440 -1751 18049 84 11 12 chrY 3112994 3118725 -48394859 + L1PA6 LINE L1 365 6153 -1 8897 170 45 22 chrY 3118821 3120484 -48393100 + MER21B-int LTR ERV1 2428 4129 -62 2190 232 85 0 chrY 3120569 3121030 -48392554 + MER21B LTR ERV1 1 500 -363 4453 269 77 15 chrY 3121030 3124396 -48389188 + L1MB4 LINE L1 1030 4721 -1661 3336 104 2 0 chrY 3124402 3124854 -48388730 + MLT2A2 LTR ERVL 1 453 0 41522 97 10 2 chrY 3124855 3130464 -48383120 + HERVL-A2 LTR ERVL 2 5654 0 3306 104 4 0 chrY 3130464 3130915 -48382669 + MLT2A2 LTR ERVL 1 453 0 260 197 0 16 chrY 3130930 3130991 -48382593 + L1MB4 LINE L1 4769 4828 -1554 637 179 41 16 chrY 3131013 3131136 -48382448 - FLAM_C SINE Alu -17 126 1 3177 212 99 11 chrY 3131192 3132619 -48380965 + L1MB4 LINE L1 4875 6416 0 431 262 87 59 chrY 3132686 3133075 -48380509 + L1ME3A LINE L1 1173 1572 -4958 31 113 0 0 chrY 3133150 3133300 -48380284 + AT_rich Low_complexity Low_complexity 1 150 0 269 316 27 0 chrY 3133337 3133515 -48380069 + L1ME3A LINE L1 1675 1911 -990 25 31 0 0 chrY 3133730 3133762 -48379822 + AT_rich Low_complexity Low_complexity 1 32 0 353 331 99 11 chrY 3133959 3134290 -48379294 + L1ME3A LINE L1 2334 2684 -3856 229 225 72 45 chrY 3134428 3134539 -48379045 + L1MC5 LINE L1 7331 7444 -517 428 268 36 14 chrY 3134617 3134837 -48378747 + L1MC5 LINE L1 7555 7779 -182 1832 108 37 65 chrY 3134969 3135321 -48378263 + L1MA9 LINE L1 5971 6312 0 21 0 0 0 chrY 3135324 3135345 -48378239 + AT_rich Low_complexity Low_complexity 1 21 0 442 297 14 62 chrY 3135495 3135704 -48377880 - MLT1K LTR MaLR -12 576 378 562 258 126 28 chrY 3138117 3138473 -48375111 + L1ME3A LINE L1 4955 5345 -1195 386 279 37 25 chrY 3138535 3138696 -48374888 + LTR65 LTR ERV1 2 164 -505 323 247 17 33 chrY 3138881 3139001 -48374583 + LTR65 LTR ERV1 539 604 -10 525 257 15 80 chrY 3139011 3139350 -48374234 + L1ME3A LINE L1 5402 5718 -822 1148 261 23 37 chrY 3139400 3139833 -48373751 + L1ME3A LINE L1 5947 6373 -191 1788 215 18 5 chrY 3140491 3140873 -48372711 - MLT1B LTR MaLR -3 387 1 27 0 0 0 chrY 3140915 3140942 -48372642 + AT_rich Low_complexity Low_complexity 1 27 0 1127 173 40 108 chrY 3141052 3141404 -48372180 + MLT1B LTR MaLR 1 328 -62 655 275 26 11 chrY 3141404 3141593 -48371991 - MLT1A1 LTR MaLR 0 365 174 460 192 102 114 chrY 3141661 3141828 -48371756 - MLT1A1 LTR MaLR -171 194 30 286 203 17 0 chrY 3141841 3141900 -48371684 + MLT1B LTR MaLR 331 390 0 5009 152 4 0 chrY 3142044 3143564 -48370020 - L1PA13 LINE L1 0 6814 5282 1135 125 0 0 chrY 3143564 3143716 -48369868 - AluSp SINE Alu -28 285 134 13165 222 23 16 chrY 3143721 3148945 -48364639 - L1PA13 LINE L1 -1510 5287 1 556 190 10 2 chrY 3149002 3149115 -48364469 + L1ME LINE L1 5618 5727 -439 246 219 0 0 chrY 3149243 3149307 -48364277 + (TA)n Simple_repeat Simple_repeat 2 65 0 222 159 23 0 chrY 3149367 3149411 -48364173 + A-rich Low_complexity Low_complexity 1 45 0 365 347 92 20 chrY 3149497 3149941 -48363643 + L1MEc LINE L1 55 530 -5866 295 265 22 49 chrY 3150049 3150234 -48363350 + L1MEc LINE L1 688 867 -5529 * 2168 258 30 27 chrY 3150215 3151107 -48362477 + L1MEc LINE L1 2345 3239 -2976 231 163 0 0 chrY 3151128 3151171 -48362413 - L1PA15-16 LINE L1 -4015 2834 2792 3033 116 28 47 chrY 3151216 3151744 -48361840 + L1PA13 LINE L1 5645 6162 -1 3163 255 37 21 chrY 3151754 3152870 -48360714 + L1 LINE L1 2148 3280 -2866 2361 133 24 5 chrY 3152869 3153244 -48360340 + MSTA-int LTR MaLR 1270 1651 0 * 2212 133 84 30 chrY 3153244 3153304 -48360280 + MSTA LTR MaLR 1 56 -372 2121 132 0 0 chrY 3153304 3153600 -48359984 + AluSx SINE Alu 1 296 -16 2212 133 84 30 chrY 3153600 3153945 -48359639 + MSTA LTR MaLR 56 428 0 416 141 26 0 chrY 3154613 3154691 -48358893 + MADE1 DNA Mariner 1 80 0 210 37 0 0 chrY 3155102 3155129 -48358455 + (TC)n Simple_repeat Simple_repeat 2 28 0 252 234 28 28 chrY 3155131 3155272 -48358312 + (TATAA)n Simple_repeat Simple_repeat 5 145 0 21 57 0 0 chrY 3155726 3155761 -48357823 + AT_rich Low_complexity Low_complexity 1 35 0 337 293 77 24 chrY 3155806 3156052 -48357532 - L1MC5 LINE L1 -209 7752 7494 599 211 184 14 chrY 3156078 3156225 -48357359 + MER5A DNA MER1_type 17 188 -1 252 337 0 0 chrY 3156227 3156316 -48357268 - L1MC5 LINE L1 -527 7434 7346 1204 287 91 48 chrY 3156494 3158041 -48355543 - L1MC4 LINE L1 -735 7226 5612 1395 256 72 88 chrY 3158062 3158617 -48354967 + MLT2B3 LTR ERVL 1 546 -8 1652 232 32 22 chrY 3158621 3159022 -48354562 - LTR52 LTR ERVL -10 411 7 542 240 101 29 chrY 3159022 3159116 -48354468 - L1MC4 LINE L1 -2215 5593 5507 183 42 0 0 chrY 3159116 3159140 -48354444 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 542 240 101 29 chrY 3159140 3159253 -48354331 - L1MC4 LINE L1 -2301 5507 5371 24 0 0 0 chrY 3159371 3159395 -48354189 + AT_rich Low_complexity Low_complexity 1 24 0 493 201 186 25 chrY 3161379 3161578 -48352006 - L1MC/D LINE L1 -2323 5554 5324 245 314 69 25 chrY 3161832 3162077 -48351507 - L1MC/D LINE L1 -1167 5048 4793 3633 142 44 64 chrY 3162315 3163019 -48350565 + LTR8 LTR ERV1 2 691 0 734 189 154 12 chrY 3163027 3163196 -48350388 - MER6B DNA MER2_type -3 207 15 245 326 0 11 chrY 3165448 3165537 -48348047 - Charlie8 DNA MER1_type -2199 218 131 672 241 14 50 chrY 3166824 3167200 -48346384 - L1MEc LINE L1 -3669 2546 688 467 349 36 45 chrY 3167226 3167558 -48346026 - L1MEc LINE L1 -5830 566 238 323 306 31 0 chrY 3169160 3169258 -48344326 + L1MC4 LINE L1 6602 6702 -1340 2131 124 7 7 chrY 3169353 3169660 -48343924 + AluSg1 SINE Alu 1 307 -2 433 182 91 0 chrY 3169727 3169826 -48343758 - L1ME LINE L1 -439 5727 5620 16923 209 31 9 chrY 3169889 3174085 -48339499 + L1PA13 LINE L1 1 4468 -2346 180 0 0 0 chrY 3174085 3174105 -48339479 + (CAA)n Simple_repeat Simple_repeat 2 21 0 16923 209 31 9 chrY 3174105 3176502 -48337082 + L1PA13 LINE L1 4468 6811 -3 5754 201 25 29 chrY 3177588 3179087 -48334497 + L1PB1 LINE L1 3871 5363 -783 894 106 0 8 chrY 3179080 3179212 -48334372 + L1PA11 LINE L1 5725 5855 -319 * 5077 110 26 3 chrY 3179211 3179972 -48333612 + L1PB1 LINE L1 5367 6145 -6 249 362 75 32 chrY 3180009 3180197 -48333387 - MLT1K LTR MaLR -188 400 205 2909 155 8 10 chrY 3180447 3180944 -48332640 + L1PA13 LINE L1 5668 6163 0 244 277 24 0 chrY 3180946 3181029 -48332555 - L1M4 LINE L1 -1587 4559 4475 1877 243 34 22 chrY 3181053 3181499 -48332085 - L1M3 LINE L1 -393 5790 5336 2129 127 3 3 chrY 3181499 3181798 -48331786 - AluSx SINE Alu -13 299 1 1877 243 34 22 chrY 3181798 3181957 -48331627 - L1M3 LINE L1 -847 5336 5180 5138 202 9 36 chrY 3181961 3182662 -48330922 - MSTA-int LTR MaLR -610 1041 323 2240 114 0 10 chrY 3182662 3182969 -48330615 - AluSx SINE Alu -5 307 4 5138 202 9 36 chrY 3182969 3182985 -48330599 - MSTA-int LTR MaLR -1328 323 308 2108 102 0 60 chrY 3182985 3183300 -48330284 - AluSg SINE Alu -12 298 3 5138 202 9 36 chrY 3183300 3183463 -48330121 - MSTA-int LTR MaLR -1343 308 192 3046 186 26 2 chrY 3183463 3184007 -48329577 - MER41D LTR ERV1 0 557 1 5138 202 9 36 chrY 3184007 3184194 -48329390 - MSTA-int LTR MaLR -1459 192 1 2249 165 54 2 chrY 3184194 3184601 -48328983 - MSTA LTR MaLR 0 428 1 2032 136 10 0 chrY 3184876 3185171 -48328413 - AluSg SINE Alu -12 298 1 26 0 0 0 chrY 3185210 3185236 -48328348 + AT_rich Low_complexity Low_complexity 1 26 0 482 276 111 19 chrY 3185263 3185778 -48327806 - L1M3 LINE L1 -1445 4701 4140 660 215 27 16 chrY 3185875 3186061 -48327523 - MER53 DNA DNA 0 189 2 256 290 91 46 chrY 3186516 3187503 -48326081 - L1M3 LINE L1 -2663 3483 2452 1275 233 73 59 chrY 3187590 3188024 -48325560 - MLT2C2 LTR ERVL -20 534 1 307 238 171 45 chrY 3188059 3188328 -48325256 - L1M3 LINE L1 -3734 2412 2110 27 0 0 0 chrY 3188718 3188745 -48324839 + AT_rich Low_complexity Low_complexity 1 27 0 1068 78 0 0 chrY 3188756 3188884 -48324700 + AluSq/x SINE Alu 6 133 -180 219 69 0 0 chrY 3188884 3188913 -48324671 + (A)n Simple_repeat Simple_repeat 1 29 0 256 150 0 0 chrY 3188931 3188971 -48324613 + Alu SINE Alu 252 291 -11 624 274 48 6 chrY 3189343 3189511 -48324073 - MER20 DNA MER1_type -11 208 34 236 116 93 0 chrY 3189544 3189587 -48323997 - MLT1D LTR MaLR -9 496 450 17317 180 35 43 chrY 3189591 3193109 -48320475 + L1MA2 LINE L1 12 3556 -4167 195 42 0 0 chrY 3193109 3193133 -48320451 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 17317 180 35 43 chrY 3193133 3193239 -48320345 + L1MA2 LINE L1 3556 3661 -4062 2307 82 0 0 chrY 3193239 3193580 -48320004 + AluY SINE Alu 1 311 0 17317 180 35 43 chrY 3193580 3196137 -48317447 + L1MA2 LINE L1 3661 6167 -1556 1902 88 0 0 chrY 3196137 3196376 -48317208 + AluY SINE Alu 1 239 -72 17317 180 35 43 chrY 3196376 3197921 -48315663 + L1MA2 LINE L1 6167 7723 0 288 77 0 0 chrY 3197978 3198017 -48315567 + (A)n Simple_repeat Simple_repeat 1 39 0 4785 173 70 37 chrY 3198035 3198653 -48314931 + L1MA4 LINE L1 4681 5277 -1023 2248 117 0 0 chrY 3198653 3198962 -48314622 + AluSc SINE Alu 1 309 0 4785 173 70 37 chrY 3198962 3199899 -48313685 + L1MA4 LINE L1 5277 6289 -11 2365 71 3 0 chrY 3199899 3200194 -48313390 - AluY SINE Alu -15 296 1 1542 252 63 43 chrY 3200273 3200718 -48312866 - MLT1D LTR MaLR -51 454 1 378 323 44 44 chrY 3200719 3200877 -48312707 - MLT1H LTR MaLR -210 339 182 387 191 53 11 chrY 3201139 3201233 -48312351 - L1MEd LINE L1 -4867 1252 1155 260 241 55 21 chrY 3201270 3201415 -48312169 - HAL1 LINE L1 -335 2172 2023 1361 101 10 0 chrY 3201800 3201998 -48311586 + L1PB1 LINE L1 5950 6149 -2 22 0 0 0 chrY 3201999 3202021 -48311563 + AT_rich Low_complexity Low_complexity 1 22 0 1416 255 125 33 chrY 3202049 3202751 -48310833 + HAL1 LINE L1 1010 1776 -731 5054 254 14 10 chrY 3202829 3205075 -48308509 - L1PA12 LINE L1 -3154 4430 2233 263 360 13 20 chrY 3205644 3205797 -48307787 - L1PA12 LINE L1 -5269 2305 2154 610 383 29 11 chrY 3206070 3206417 -48307167 - L1PA12 LINE L1 -6434 1140 788 1744 221 26 0 chrY 3206428 3206808 -48306776 - MER57A LTR ERV1 -6 397 8 2313 109 0 0 chrY 3207236 3207540 -48306044 + AluY SINE Alu 1 304 -7 482 192 295 17 chrY 3208462 3208774 -48304810 + LTR29 LTR ERV1 1 424 -198 * 713 160 72 46 chrY 3208742 3208936 -48304648 + LTR49 LTR ERV1 395 593 -2 216 352 48 8 chrY 3209446 3209571 -48304013 - L2 LINE L2 -43 3270 3141 692 343 53 60 chrY 3209737 3209758 -48303826 - L2 LINE L2 -157 3156 3136 378 0 0 0 chrY 3209758 3209800 -48303784 + (TA)n Simple_repeat Simple_repeat 2 43 0 692 343 53 60 chrY 3209800 3210516 -48303068 - L2 LINE L2 -177 3136 2435 1071 201 69 3 chrY 3211368 3211657 -48301927 + L1MB5 LINE L1 5616 5923 -251 3267 246 25 37 chrY 3211675 3212815 -48300769 + L1MB5 LINE L1 4194 5319 -827 2788 205 50 72 chrY 3212820 3213121 -48300463 + L1MB5 LINE L1 5274 5580 -594 1115 247 92 86 chrY 3213121 3213729 -48299855 + LTR9 LTR ERV1 1 612 0 2788 205 50 72 chrY 3213729 3214346 -48299238 + L1MB5 LINE L1 5580 6172 -2 2425 101 62 0 chrY 3214830 3215185 -48298399 - MER51B LTR ERV1 0 377 1 7175 150 81 43 chrY 3215189 3217284 -48296300 - MER51B-int LTR ERV1 -4 7812 5407 1776 137 8 6 chrY 3217278 3217668 -48295916 - MER51-int LTR ERV1 -2570 2647 2213 * 1714 154 78 17 chrY 3217664 3218125 -48295459 - MER51-int LTR ERV1 -2774 3172 1474 * 360 141 103 0 chrY 3218097 3218175 -48295409 - MER51-int LTR ERV1 -4489 3327 3242 * 1458 117 94 2 chrY 3218158 3218491 -48295093 - MER51-int LTR ERV1 -4755 3061 2577 623 149 62 72 chrY 3218491 3219115 -48294469 + SVA Other Other 452 643 -743 5273 102 21 5 chrY 3219219 3220108 -48293476 - MER51-int LTR ERV1 -5103 2713 1810 627 210 17 73 chrY 3220108 3220286 -48293298 - MER4A LTR ERV1 -131 741 372 266 167 0 0 chrY 3220328 3220376 -48293208 - MER4A LTR ERV1 -566 98 51 4064 148 44 24 chrY 3220376 3220794 -48292790 - MER51-int LTR ERV1 -6305 1511 1068 2107 114 7 10 chrY 3220794 3221101 -48292483 - AluSg SINE Alu -3 307 2 4064 148 44 24 chrY 3221101 3221475 -48292109 - MER51-int LTR ERV1 -6748 1068 703 3496 53 2 7 chrY 3221475 3221925 -48291659 + LTR7 LTR ERV1 1 448 -2 19365 95 6 18 chrY 3221927 3224951 -48288633 + HERVH LTR ERV1 1 2987 -4726 787 150 27 0 chrY 3224945 3225092 -48288492 + HERVH LTR ERV1 3140 3290 -4423 * 1267 149 0 5 chrY 3225082 3225296 -48288288 + HERVH LTR ERV1 3492 3704 -4009 1290 134 18 5 chrY 3225399 3225616 -48287968 + HERVH LTR ERV1 5600 5819 -1894 1962 70 55 16 chrY 3225639 3225951 -48287633 + HERVH LTR ERV1 7390 7713 0 3363 62 2 7 chrY 3225951 3226401 -48287183 + LTR7 LTR ERV1 1 448 -2 3345 180 54 15 chrY 3226401 3227083 -48286501 - MER51B-int LTR ERV1 -7107 709 1 2343 119 57 0 chrY 3227087 3227440 -48286144 - MER51B LTR ERV1 -4 373 1 2293 65 7 19 chrY 3227633 3227940 -48285644 + AluY SINE Alu 1 303 -8 4486 128 31 7 chrY 3228116 3228867 -48284717 + MER4E LTR ERV1 1 769 -10 22 35 0 0 chrY 3229220 3229249 -48284335 + AT_rich Low_complexity Low_complexity 1 29 0 1261 186 17 8 chrY 3230026 3230262 -48283322 + AluJo SINE Alu 66 303 -9 519 17 0 0 chrY 3230451 3230511 -48283073 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 561 290 65 0 chrY 3230722 3230891 -48282693 - MIR SINE MIR -42 220 41 14559 192 27 8 chrY 3230923 3233887 -48279697 + L1MA1 LINE L1 14 3033 -4532 9521 206 19 2 chrY 3233885 3235638 -48277946 + L1MA1 LINE L1 4342 6144 -1421 * 186 43 0 0 chrY 3235638 3235661 -48277923 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9521 206 19 2 chrY 3235661 3236189 -48277395 + L1MA1 LINE L1 6144 6662 -903 1628 153 220 11 chrY 3236189 3236374 -48277210 - MSTA LTR MaLR 0 428 283 180 0 0 0 chrY 3236374 3236394 -48277190 + (GA)n Simple_repeat Simple_repeat 1 20 0 1628 153 220 11 chrY 3236394 3236562 -48277022 - MSTA LTR MaLR -145 283 1 9459 144 7 35 chrY 3236562 3238184 -48275400 - MSTA-int LTR MaLR 0 1580 3 1115 181 141 82 chrY 3238186 3238540 -48275044 - MSTA LTR MaLR 0 428 1 6003 120 36 9 chrY 3238541 3239576 -48274008 + L1MA1 LINE L1 6659 7721 0 266 133 0 0 chrY 3239583 3239628 -48273956 + L1PA16 LINE L1 6120 6164 -2 2945 6 0 0 chrY 3240759 3241077 -48272507 + AluYb8 SINE Alu 1 318 0 486 33 0 0 chrY 3241275 3241335 -48272249 + (CA)n Simple_repeat Simple_repeat 1 60 0 27 29 0 0 chrY 3241336 3241370 -48272214 + AT_rich Low_complexity Low_complexity 1 34 0 450 178 69 23 chrY 3242313 3242487 -48271097 - MER53 DNA DNA -1 188 7 22 94 0 0 chrY 3242570 3242634 -48270950 + AT_rich Low_complexity Low_complexity 1 64 0 195 316 105 0 chrY 3243131 3243226 -48270358 - MIR SINE MIR -54 208 104 1295 258 31 19 chrY 3243252 3243670 -48269914 + L1ME1 LINE L1 5695 6117 -49 36 53 0 0 chrY 3243675 3243732 -48269852 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chrY 3244047 3244069 -48269515 + AT_rich Low_complexity Low_complexity 1 22 0 1063 247 47 16 chrY 3244098 3244478 -48269106 + L1ME2 LINE L1 5764 6155 -9 25 31 0 0 chrY 3244546 3244578 -48269006 + AT_rich Low_complexity Low_complexity 1 32 0 195 280 67 13 chrY 3245318 3245393 -48268191 + L2 LINE L2 3164 3242 -71 1859 213 72 0 chrY 3245433 3245823 -48267761 - MER47B DNA MER2_type 0 418 1 612 353 19 8 chrY 3246339 3246597 -48266987 + MIR SINE MIR 1 261 -1 5741 116 12 3 chrY 3248606 3249682 -48263902 - L1PB1 LINE L1 0 6151 5069 334 200 0 0 chrY 3249690 3249750 -48263834 + L1 LINE L1 4560 4619 -1527 1734 229 69 55 chrY 3250714 3251370 -48262214 - L1ME2 LINE L1 -1 6163 5499 1379 207 58 29 chrY 3251375 3251718 -48261866 - MLT1A1 LTR MaLR -12 353 1 308 296 84 7 chrY 3251798 3251940 -48261644 - L1MEc LINE L1 -5716 680 528 228 213 0 67 chrY 3251970 3252045 -48261539 - L1MEc LINE L1 -6292 104 35 7055 222 14 4 chrY 3252091 3253714 -48259870 + L1PBa LINE L1 6 1643 -5220 * 13440 209 23 15 chrY 3253685 3257308 -48256276 + L1PB2 LINE L1 11 3800 -2408 4099 75 2 0 chrY 3257308 3257841 -48255743 + L1PA7 LINE L1 5618 6151 -3 13440 209 23 15 chrY 3257841 3260270 -48253314 + L1PB2 LINE L1 3800 6207 -1 1749 278 42 4 chrY 3260275 3260965 -48252619 - L1M4 LINE L1 -3113 3033 2318 464 273 54 88 chrY 3261284 3261746 -48251838 + MLT1H LTR MaLR 1 548 -1 263 140 0 0 chrY 3261902 3261952 -48251632 + L1MA9 LINE L1 6212 6261 -51 978 153 18 0 chrY 3263537 3263707 -48249877 + L1P4 LINE L1 5429 5601 -562 1949 143 32 37 chrY 3264016 3264393 -48249191 + THE1C LTR MaLR 1 375 0 1872 162 12 137 chrY 3264399 3264888 -48248696 + MSTC LTR MaLR 1 428 0 358 230 98 102 chrY 3265334 3265599 -48247985 + L1MEc LINE L1 744 1007 -5198 816 254 59 36 chrY 3265660 3266150 -48247434 + L1ME2 LINE L1 19 5631 -1310 1276 142 71 0 chrY 3266150 3266403 -48247181 - L1MC2 LINE L1 -1 6343 6073 2061 210 41 111 chrY 3266410 3266610 -48246974 - MER74A LTR ERVL 0 622 410 2201 108 0 3 chrY 3266610 3266906 -48246678 + AluY SINE Alu 3 297 -14 2061 210 41 111 chrY 3266906 3267319 -48246265 - MER74A LTR ERVL -212 410 26 568 220 129 21 chrY 3267319 3267505 -48246079 - L1MC2 LINE L1 -269 6075 5870 2117 110 0 3 chrY 3267524 3267814 -48245770 + AluY SINE Alu 1 289 -22 812 288 50 11 chrY 3267814 3268193 -48245391 + L1ME2 LINE L1 5642 6035 -906 838 279 46 53 chrY 3268194 3268800 -48244784 + MLT1E3 LTR MaLR 1 624 0 364 245 102 7 chrY 3268800 3268947 -48244637 + L1ME2 LINE L1 6032 6192 -749 1993 219 28 34 chrY 3268950 3269453 -48244131 - MLT1D LTR MaLR -5 500 1 2102 267 44 21 chrY 3269453 3270199 -48243385 + L1ME2 LINE L1 6186 6948 -11 418 258 105 53 chrY 3270207 3270397 -48243187 + L1MEc LINE L1 1619 1818 -4578 490 217 101 14 chrY 3270521 3270659 -48242925 - MLT1E LTR MaLR -428 165 16 634 302 13 38 chrY 3270676 3270911 -48242673 - MLT1E-int LTR MaLR -2 1369 1141 1898 216 76 24 chrY 3270929 3271351 -48242233 + MLT2B1 LTR ERVL 1 444 -76 539 264 22 51 chrY 3271688 3271866 -48241718 - MLT1E-int LTR MaLR -507 864 692 3195 107 9 34 chrY 3272005 3272529 -48241055 - MER9 LTR ERVK 0 511 1 912 282 39 6 chrY 3272598 3272928 -48240656 - MLT1E-int LTR MaLR -768 603 263 235 269 84 25 chrY 3273064 3273183 -48240401 - MLT2F LTR ERVL 0 663 538 302 261 0 0 chrY 3273362 3273427 -48240157 - MLT1E1 LTR MaLR -412 242 178 259 263 53 0 chrY 3273474 3273550 -48240034 - MLT1E1 LTR MaLR -507 117 38 * 376 343 0 7 chrY 3273546 3273683 -48239901 - MLT2F LTR ERVL -522 141 6 628 287 93 8 chrY 3273931 3274168 -48239416 + L1ME2 LINE L1 5899 6155 -9 645 267 22 30 chrY 3274214 3274484 -48239100 + L1MEd LINE L1 975 1242 -4877 187 240 50 140 chrY 3274486 3274586 -48238998 + L2 LINE L2 3221 3311 -2 517 343 43 30 chrY 3275245 3275501 -48238083 + L1ME2 LINE L1 5386 5637 -527 763 164 0 0 chrY 3275501 3275635 -48237949 + L1PB1 LINE L1 6016 6149 -2 517 343 43 30 chrY 3275635 3275885 -48237699 + L1ME2 LINE L1 5637 5899 -265 351 331 43 61 chrY 3275928 3276303 -48237281 + L1M3d LINE L1 413 780 -5523 4043 222 99 56 chrY 3276566 3278353 -48235231 + L1M3d LINE L1 777 2544 -3838 1326 207 6 48 chrY 3278357 3278671 -48234913 + AluJo SINE Alu 12 312 0 902 269 74 0 chrY 3278696 3279020 -48234564 + L1M3d LINE L1 2552 2899 -3483 5890 106 1 2 chrY 3279026 3279850 -48233734 + L1PA13 LINE L1 15 837 -5624 5458 128 20 1 chrY 3279850 3280443 -48233141 + L1PA13 LINE L1 4899 5479 -999 207 0 0 0 chrY 3280443 3280466 -48233118 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5458 128 20 1 chrY 3280466 3281422 -48232162 + L1PA13 LINE L1 5479 6467 -11 1069 237 13 43 chrY 3281662 3281962 -48231622 - AluJo SINE Alu -11 291 1 217 345 23 100 chrY 3282119 3282290 -48231294 - L2 LINE L2 -408 2906 2754 2188 120 3 3 chrY 3282290 3282599 -48230985 - AluSx SINE Alu -3 309 1 217 345 23 100 chrY 3282599 3282647 -48230937 - L2 LINE L2 -560 2754 2704 350 64 0 0 chrY 3282657 3282704 -48230880 + MADE1 DNA Mariner 33 79 -1 334 415 0 6 chrY 3282705 3282864 -48230720 - L2 LINE L2 -607 2707 2550 22 0 0 0 chrY 3282977 3282999 -48230585 + AT_rich Low_complexity Low_complexity 1 22 0 359 265 60 20 chrY 3283371 3283522 -48230062 + L1M3d LINE L1 2640 2796 -3586 347 293 106 49 chrY 3283597 3284284 -48229300 + L1M3d LINE L1 2921 3675 -2707 2562 20 0 7 chrY 3284284 3284608 -48228976 + AluYa5 SINE Alu 1 322 0 347 293 106 49 chrY 3284608 3284833 -48228751 + L1M3d LINE L1 3675 3886 -2496 988 172 0 0 chrY 3284910 3285067 -48228517 + FRAM SINE Alu 1 152 -24 29 0 0 0 chrY 3285068 3285097 -48228487 + AT_rich Low_complexity Low_complexity 1 29 0 373 296 87 12 chrY 3285206 3285378 -48228206 + MLT1J LTR MaLR 320 504 -7 297 294 35 0 chrY 3285413 3285498 -48228086 - HERV16 LTR ERVL -4907 89 2 575 275 143 72 chrY 3285512 3285912 -48227672 - LTR16A LTR ERVL -14 443 16 255 200 57 0 chrY 3286036 3286106 -48227478 + L1MC/D LINE L1 5368 5441 -2367 2265 149 78 7 chrY 3286171 3286593 -48226991 + LTR47A LTR ERVL 1 452 0 2046 195 47 31 chrY 3286691 3287311 -48226273 + L1M3 LINE L1 5064 5697 -486 309 279 15 22 chrY 3287921 3288057 -48225527 - L1MEd LINE L1 -5061 1058 924 1947 132 3 3 chrY 3288063 3288351 -48225233 + AluSx SINE Alu 1 288 -24 499 244 9 0 chrY 3288403 3288518 -48225066 - L1ME1 LINE L1 -20 6146 6031 14986 237 20 19 chrY 3288531 3293239 -48220345 - L1PA13 LINE L1 -847 5950 1220 2887 296 43 19 chrY 3293254 3294075 -48219509 - L1PA13 LINE L1 -5947 840 1 3353 234 25 16 chrY 3294110 3295024 -48218560 - L1 LINE L1 -1595 4551 3630 773 228 13 0 chrY 3295033 3295191 -48218393 + MLT1A1 LTR MaLR 1 160 -205 12416 133 7 11 chrY 3295191 3297235 -48216349 + L1P LINE L1 3236 5271 -875 7669 112 6 31 chrY 3297258 3298499 -48215085 - L1P LINE L1 -2733 3413 2205 1663 76 0 0 chrY 3298499 3298709 -48214875 - AluY SINE Alu -8 303 94 5478 220 3 11 chrY 3298718 3299948 -48213636 + L1P LINE L1 2674 3894 -2252 1619 186 0 24 chrY 3299952 3300247 -48213337 + AluJb SINE Alu 1 288 -24 387 158 0 10 chrY 3300275 3300365 -48213219 + L1M4 LINE L1 3869 3955 -2191 23 54 0 0 chrY 3301432 3301469 -48212115 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chrY 3301869 3301897 -48211687 + AT_rich Low_complexity Low_complexity 1 28 0 201 167 56 0 chrY 3302124 3302178 -48211406 + (TA)n Simple_repeat Simple_repeat 2 58 0 629 291 35 20 chrY 3303363 3303566 -48210018 + MLT1I LTR MaLR 1 206 -203 1174 333 10 15 chrY 3303853 3304256 -48209328 + MLT1I LTR MaLR 1 401 -8 1213 245 33 18 chrY 3304829 3305164 -48208420 + MER58B DNA MER1_type 2 341 0 3384 210 59 2 chrY 3305754 3306539 -48207045 - L1 LINE L1 -1154 6411 5583 2037 184 124 3 chrY 3306524 3307290 -48206294 + L1MB3 LINE L1 4952 5789 -523 * 715 171 11 17 chrY 3307304 3307485 -48206099 + (TA)n Simple_repeat Simple_repeat 1 180 0 1129 190 47 18 chrY 3307498 3307832 -48205752 + L1MB3 LINE L1 5776 6174 -9 22 0 0 0 chrY 3307837 3307859 -48205725 + AT_rich Low_complexity Low_complexity 1 22 0 3575 167 29 20 chrY 3307859 3308627 -48204957 + L1MA9 LINE L1 5413 6290 -22 376 344 46 0 chrY 3309030 3309179 -48204405 - MIR SINE MIR -6 256 101 263 316 84 26 chrY 3309179 3309334 -48204250 + MIR SINE MIR 1 164 -98 221 273 36 0 chrY 3310023 3310078 -48203506 + L2 LINE L2 3249 3305 -8 5356 163 18 22 chrY 3310169 3311594 -48201990 - L1 LINE L1 -3458 4107 2687 9310 106 3 1 chrY 3311635 3312983 -48200601 + L1P LINE L1 3646 4996 -1150 10135 231 84 25 chrY 3312985 3315245 -48198339 - L1 LINE L1 -4866 2699 559 7485 34 0 3 chrY 3315245 3316328 -48197256 + L1PA5 LINE L1 5074 6154 0 10135 231 84 25 chrY 3316328 3316905 -48196679 - L1 LINE L1 -7006 559 17 320 415 50 0 chrY 3317012 3317171 -48196413 + L2 LINE L2 3104 3270 -2 23 68 0 0 chrY 3317320 3317364 -48196220 + AT_rich Low_complexity Low_complexity 1 44 0 435 128 3 12 chrY 3317642 3317727 -48195857 - L1PA5 LINE L1 -253 5901 5820 2596 51 0 0 chrY 3317933 3318244 -48195340 + AluY SINE Alu 1 311 0 294 29 0 0 chrY 3319181 3319216 -48194368 + (CA)n Simple_repeat Simple_repeat 1 35 0 464 362 40 25 chrY 3319275 3319514 -48194070 + MIR SINE MIR 10 250 -12 258 250 0 0 chrY 3319520 3319576 -48194008 + (ATG)n Simple_repeat Simple_repeat 2 57 0 192 77 0 0 chrY 3319900 3319926 -48193658 + (CA)n Simple_repeat Simple_repeat 1 26 0 1424 192 59 50 chrY 3319928 3320267 -48193317 - MER2 DNA MER2_type -2 342 1 349 276 7 22 chrY 3321033 3321155 -48192429 + MLT1H LTR MaLR 1 162 -387 4457 185 41 4 chrY 3321256 3322260 -48191324 + L1MB8 LINE L1 5124 6178 0 336 283 93 73 chrY 3322320 3322567 -48191017 + L1ME LINE L1 4535 4786 -1360 22 0 0 0 chrY 3323036 3323058 -48190526 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrY 3323577 3323607 -48189977 + AT_rich Low_complexity Low_complexity 1 30 0 397 283 0 0 chrY 3323762 3323861 -48189723 + L1ME LINE L1 5638 5736 -434 37 62 0 0 chrY 3323994 3324059 -48189525 + AT_rich Low_complexity Low_complexity 1 65 0 188 260 77 10 chrY 3324068 3324172 -48189412 - L2 LINE L2 -150 3163 3053 1091 213 30 22 chrY 3324349 3324617 -48188967 + LTR43 LTR ERV1 177 446 -156 1033 278 108 32 chrY 3324710 3325171 -48188413 - L2 LINE L2 -417 2897 2402 1596 253 26 30 chrY 3325310 3325817 -48187767 - MLT1D LTR MaLR 0 505 1 319 296 175 25 chrY 3326068 3326162 -48187422 - L1ME4a LINE L1 -247 5874 5795 2123 125 47 33 chrY 3326162 3326521 -48187063 - THE1B LTR MaLR 0 364 1 319 296 175 25 chrY 3326521 3326666 -48186918 - L1ME4a LINE L1 -326 5795 5599 315 283 71 0 chrY 3327067 3327166 -48186418 - L1ME4a LINE L1 -2379 5429 5324 800 269 40 31 chrY 3327789 3328016 -48185568 + MIR SINE MIR 1 229 -33 5898 146 13 15 chrY 3328039 3329070 -48184514 + L1MC1 LINE L1 5298 6327 -6 941 130 10 47 chrY 3329062 3329254 -48184330 - L1PA15-16 LINE L1 -4786 2063 1879 * 4947 174 41 22 chrY 3329256 3330307 -48183277 + L1PA16 LINE L1 4438 5528 -638 1944 131 0 17 chrY 3330307 3330598 -48182986 + AluSx SINE Alu 10 295 -17 4947 174 41 22 chrY 3330598 3331244 -48182340 + L1PA16 LINE L1 5528 6160 -6 214 261 0 0 chrY 3333260 3333306 -48180278 - L2 LINE L2 -12 3301 3256 2388 194 58 79 chrY 3333475 3334180 -48179404 + LTR8 LTR ERV1 2 691 0 2223 151 5 13 chrY 3334183 3334561 -48179023 - THE1C LTR MaLR 0 375 1 329 236 57 89 chrY 3334636 3334793 -48178791 + MLT1K LTR MaLR 316 467 -121 23 33 0 0 chrY 3334822 3334852 -48178732 + AT_rich Low_complexity Low_complexity 1 30 0 273 315 79 39 chrY 3335315 3335442 -48178142 + L2 LINE L2 3141 3272 0 238 316 35 57 chrY 3335794 3336022 -48177562 - L1ME LINE L1 -203 5918 5696 319 348 92 27 chrY 3336115 3336299 -48177285 - L1ME LINE L1 -2239 5569 5374 892 224 73 29 chrY 3336498 3336743 -48176841 + LTR16A1 LTR ERVL 198 453 -4 217 384 20 0 chrY 3337053 3337152 -48176432 + L2 LINE L2 2376 2476 -838 1517 174 169 21 chrY 3337159 3337532 -48176052 - MSTA LTR MaLR 0 428 1 8846 201 15 1 chrY 3337532 3339143 -48174441 - MSTA-int LTR MaLR 0 1651 18 1955 148 137 5 chrY 3339176 3339549 -48174035 - MSTA LTR MaLR -6 422 1 4275 128 35 4 chrY 3339573 3340294 -48173290 - L1MA2 LINE L1 -296 7427 6685 11976 201 21 39 chrY 3340329 3343305 -48170279 - L1MA2 LINE L1 -874 6691 3769 811 162 0 15 chrY 3343316 3343452 -48170132 - AluSq/x SINE Alu -179 134 1 13163 180 65 48 chrY 3343453 3344242 -48169342 - L1MA2 LINE L1 -3783 3782 3008 2481 75 10 0 chrY 3344242 3344550 -48169034 - AluY SINE Alu 0 311 1 13163 180 65 48 chrY 3344550 3345276 -48168308 - L1MA2 LINE L1 -4557 3008 2296 2277 97 3 0 chrY 3345276 3345575 -48168009 + AluSp SINE Alu 2 301 -12 13163 180 65 48 chrY 3345575 3347103 -48166481 - L1MA2 LINE L1 -5269 2296 688 6311 205 47 60 chrY 3347094 3348461 -48165123 + L1MC3 LINE L1 5195 5039 -1107 * 225 87 0 0 chrY 3348461 3348507 -48165077 + LTR66 LTR ERVL 394 439 -171 6311 205 47 60 chrY 3348507 3348869 -48164715 + L1MC3 LINE L1 5038 5403 -743 251 136 17 51 chrY 3348871 3348930 -48164654 + MLT1F1 LTR MaLR 46 102 -465 1763 183 109 10 chrY 3348936 3349341 -48164243 + L1MC3 LINE L1 7188 7632 -153 823 143 7 0 chrY 3349392 3349532 -48164052 + L1MA2 LINE L1 6111 6251 -53 315 0 0 0 chrY 3349532 3349567 -48164017 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 341 53 0 53 chrY 3349566 3349623 -48163961 + (TA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chrY 3349639 3349663 -48163921 + AT_rich Low_complexity Low_complexity 1 24 0 1413 215 22 0 chrY 3349682 3349956 -48163628 + AluJo SINE Alu 3 282 -30 491 0 17 0 chrY 3349956 3350015 -48163569 + (CA)n Simple_repeat Simple_repeat 1 60 0 655 273 57 54 chrY 3351075 3351408 -48162176 + LTR52 LTR ERVL 3 336 -85 349 263 75 25 chrY 3351466 3351626 -48161958 + MER112 DNA MER1_type 68 235 -25 237 309 53 21 chrY 3351769 3351863 -48161721 - MIR3 SINE MIR -102 106 10 1236 277 103 14 chrY 3354545 3354982 -48158602 + MLT1H LTR MaLR 74 549 0 559 285 62 26 chrY 3355074 3355141 -48158443 + MIR SINE MIR 49 112 -150 1247 115 150 0 chrY 3355141 3355341 -48158243 + MER30 DNA MER1_type 1 230 0 559 285 62 26 chrY 3355341 3355466 -48158118 + MIR SINE MIR 112 248 -14 29 84 0 0 chrY 3356007 3356078 -48157506 + AT_rich Low_complexity Low_complexity 1 71 0 2618 7 0 0 chrY 3356319 3356609 -48156975 + AluYb8 SINE Alu 1 317 0 244 0 0 0 chrY 3356609 3356636 -48156948 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1029 314 73 15 chrY 3356774 3357185 -48156399 - LTR16A LTR ERVL -13 437 3 579 378 91 9 chrY 3357237 3357690 -48155894 - L2 LINE L2 -37 3276 2790 2524 68 0 0 chrY 3357786 3358097 -48155487 - AluY SINE Alu 0 311 1 2419 236 36 11 chrY 3358205 3358871 -48154713 + L1MD1 LINE L1 3593 4275 -1871 282 317 78 14 chrY 3358876 3359018 -48154566 + L1MD1 LINE L1 4201 4351 -1795 2313 215 24 15 chrY 3359031 3359625 -48153959 + L1MD1 LINE L1 5167 5753 -606 4300 94 10 0 chrY 3359642 3360258 -48153326 - L1PA13 LINE L1 0 6163 5542 3680 73 6 4 chrY 3360259 3360750 -48152834 - L1PA11 LINE L1 -55 6119 5628 2035 181 25 85 chrY 3360782 3361098 -48152486 + L1MD1 LINE L1 5745 6079 -163 2429 75 10 0 chrY 3361098 3361406 -48152178 + AluY SINE Alu 1 311 0 2350 73 0 19 chrY 3361409 3361722 -48151862 + AluY SINE Alu 1 307 -4 2035 181 25 85 chrY 3361722 3361930 -48151654 + L1MD1 LINE L1 6081 6241 -1 220 405 12 0 chrY 3363060 3363144 -48150440 - MIR SINE MIR -161 101 17 300 278 42 52 chrY 3363210 3363401 -48150183 + L1MC4a LINE L1 5753 5941 -1867 22 0 0 0 chrY 3364027 3364049 -48149535 + AT_rich Low_complexity Low_complexity 1 22 0 7885 230 45 31 chrY 3365136 3365930 -48147654 - L1MB3 LINE L1 -2 6181 5400 2239 75 3 0 chrY 3365930 3366223 -48147361 - AluY SINE Alu -17 294 1 7885 230 45 31 chrY 3366223 3367529 -48146055 - L1MB3 LINE L1 -783 5400 4114 1763 130 27 3 chrY 3367529 3367828 -48145756 - L1PA13 LINE L1 -1 6162 5857 7885 230 45 31 chrY 3367828 3369412 -48144172 - L1MB3 LINE L1 -2069 4114 2442 225 0 0 0 chrY 3369413 3369438 -48144146 + (CA)n Simple_repeat Simple_repeat 2 26 0 1361 187 65 0 chrY 3369445 3369760 -48143824 - L1PB4 LINE L1 -4 6152 5478 * 1621 238 15 11 chrY 3369759 3370226 -48143358 + L1MA7 LINE L1 4313 4781 -1365 3479 159 63 7 chrY 3370229 3370922 -48142662 + L1MA7 LINE L1 5557 6288 -3 234 244 23 12 chrY 3371018 3371104 -48142480 + (TA)n Simple_repeat Simple_repeat 2 88 0 301 390 13 0 chrY 3371577 3371731 -48141853 - L1ME2 LINE L1 -176 5988 5833 448 292 39 49 chrY 3372675 3372959 -48140625 - L1ME2 LINE L1 -2229 5579 5299 2314 90 0 6 chrY 3373020 3373331 -48140253 - AluSc SINE Alu 0 309 1 2197 209 19 86 chrY 3373433 3374025 -48139559 + MLT2B3 LTR ERVL 1 552 -2 712 289 82 16 chrY 3374109 3374424 -48139160 + L1MC5 LINE L1 5602 5937 -1871 360 0 0 0 chrY 3374433 3374473 -48139111 + (TA)n Simple_repeat Simple_repeat 2 41 0 7934 96 7 1 chrY 3374515 3376445 -48137139 + L1PA7 LINE L1 4204 6150 -4 22 0 0 0 chrY 3376445 3376467 -48137117 + AT_rich Low_complexity Low_complexity 1 22 0 1974 231 97 101 chrY 3376885 3378181 -48135403 + L1MC5 LINE L1 6635 7924 -37 32 57 0 0 chrY 3378236 3378289 -48135295 + AT_rich Low_complexity Low_complexity 1 53 0 3089 121 12 14 chrY 3378316 3378827 -48134757 + L1MA2 LINE L1 5795 6304 0 250 387 0 0 chrY 3378895 3379019 -48134565 + L1MEc LINE L1 296 419 -5977 294 310 41 46 chrY 3379145 3379342 -48134242 + L1MEc LINE L1 492 687 -5709 495 113 0 0 chrY 3379343 3379444 -48134140 + AluSg/x SINE Alu 213 313 0 535 278 107 56 chrY 3379445 3379823 -48133761 + L1MEc LINE L1 680 1086 -5310 180 0 0 0 chrY 3379823 3379843 -48133741 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 535 278 107 56 chrY 3379843 3379914 -48133670 + L1MEc LINE L1 1086 1152 -5244 356 207 0 0 chrY 3379937 3380019 -48133565 + L1MEc LINE L1 2907 2988 -3227 227 31 31 0 chrY 3380392 3380424 -48133160 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1957 114 0 4 chrY 3380689 3380961 -48132623 + AluSc SINE Alu 35 305 -4 307 358 43 21 chrY 3381173 3381360 -48132224 - MIR SINE MIR -52 210 20 27 29 0 0 chrY 3381667 3381701 -48131883 + AT_rich Low_complexity Low_complexity 1 34 0 559 308 107 8 chrY 3381873 3382107 -48131477 - MIR SINE MIR -4 258 2 1878 256 99 23 chrY 3382401 3382956 -48130628 - MLT2F LTR ERVL -66 597 1 1869 128 25 4 chrY 3385263 3385544 -48128040 - AluSg SINE Alu -15 295 9 231 218 126 58 chrY 3386001 3386072 -48127512 - MLT1J LTR MaLR -44 467 388 5235 95 70 13 chrY 3386072 3386853 -48126731 - LTR12 LTR ERV1 0 826 1 231 218 126 58 chrY 3386853 3386868 -48126716 - MLT1J LTR MaLR -123 388 375 2062 151 125 8 chrY 3387217 3387600 -48125984 + MSTA LTR MaLR 1 428 0 374 262 89 46 chrY 3387848 3388303 -48125281 + L1ME LINE L1 5295 5774 -396 54 49 0 0 chrY 3388303 3388385 -48125199 + AT_rich Low_complexity Low_complexity 1 82 0 1468 272 29 29 chrY 3388444 3388999 -48124585 - L1M4 LINE L1 -1573 4809 4255 207 0 0 0 chrY 3389007 3389030 -48124554 + (TC)n Simple_repeat Simple_repeat 2 24 0 183 129 0 0 chrY 3389074 3389105 -48124479 + (TA)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chrY 3389106 3389133 -48124451 + (TG)n Simple_repeat Simple_repeat 2 28 0 425 223 79 46 chrY 3389161 3389390 -48124194 - L1M4 LINE L1 -2162 4220 3989 186 43 0 0 chrY 3389390 3389413 -48124171 + (TA)n Simple_repeat Simple_repeat 1 23 0 959 277 64 4 chrY 3389467 3389954 -48123630 - L1M4 LINE L1 -2685 3697 3182 255 289 0 0 chrY 3389951 3390034 -48123550 + L1M4 LINE L1 2134 2216 -3930 * 4681 167 13 16 chrY 3390050 3391344 -48122240 + L1PA16 LINE L1 4876 6165 -1 740 205 12 6 chrY 3391378 3391539 -48122045 + AluJb SINE Alu 1 162 -150 303 250 22 0 chrY 3391713 3391805 -48121779 - L1M4 LINE L1 -4543 1841 1748 2133 158 14 19 chrY 3391810 3392176 -48121408 + THE1B LTR MaLR 1 364 0 10124 100 13 0 chrY 3392176 3393678 -48119906 + THE1B-int LTR MaLR 1 1580 0 2055 168 19 19 chrY 3393678 3394042 -48119542 + THE1B LTR MaLR 1 364 0 789 255 105 22 chrY 3394044 3394358 -48119226 - L1M4 LINE L1 -4639 1745 1406 * 2410 200 29 53 chrY 3394356 3394884 -48118700 + L1MB7 LINE L1 5568 6080 -104 571 76 13 0 chrY 3394884 3394963 -48118621 - MADE1 DNA Mariner 0 80 1 2410 200 29 53 chrY 3394963 3395058 -48118526 + L1MB7 LINE L1 6080 6176 -8 1800 182 5 32 chrY 3395973 3396346 -48117238 + MLT1A1 LTR MaLR 3 365 0 202 279 59 0 chrY 3396872 3396940 -48116644 + L2 LINE L2 2288 2359 -955 11090 170 13 7 chrY 3396972 3398923 -48114661 + Tigger1 DNA MER2_type 1 1963 -455 216 0 0 0 chrY 3398923 3398947 -48114637 + (T)n Simple_repeat Simple_repeat 1 24 0 8481 207 14 19 chrY 3398960 3399617 -48113967 - L1PA13 LINE L1 -762 6035 5376 1940 204 117 65 chrY 3399617 3400402 -48113182 + LTR1B LTR ERV1 1 826 0 8481 207 14 19 chrY 3400402 3401021 -48112563 - L1PA13 LINE L1 -1421 5376 4756 2016 178 51 10 chrY 3401021 3401432 -48112152 + MSTA LTR MaLR 1 428 0 8481 207 14 19 chrY 3401432 3402085 -48111499 - L1PA13 LINE L1 -2041 4756 4114 1895 144 64 25 chrY 3402085 3402446 -48111138 - THE1C LTR MaLR 0 375 1 9166 134 39 42 chrY 3402451 3404029 -48109555 - THE1C-int LTR MaLR -6 1574 1 1900 143 88 20 chrY 3404029 3404380 -48109204 - THE1C LTR MaLR 0 375 1 1517 231 26 3 chrY 3404380 3404766 -48108818 - L1PA13 LINE L1 -2679 4118 3724 1952 201 61 25 chrY 3404766 3405210 -48108374 - LTR2B LTR ERV1 0 490 31 6444 229 31 5 chrY 3405228 3407702 -48105882 - L1PA13 LINE L1 -3070 3727 1174 3501 198 3 0 chrY 3407707 3408282 -48105302 - L1PA13 LINE L1 -6209 578 2 2113 153 55 3 chrY 3408293 3408678 -48104906 + Tigger1 DNA MER2_type 1951 2355 -63 469 339 97 63 chrY 3408717 3408934 -48104650 + L2 LINE L2 2394 2602 -711 2508 71 0 0 chrY 3408934 3409245 -48104339 - AluY SINE Alu 0 311 1 469 339 97 63 chrY 3409245 3409912 -48103672 + L2 LINE L2 2602 3313 0 778 253 6 0 chrY 3410098 3410280 -48103304 + MER3 DNA MER1_type 1 183 -26 2559 173 47 49 chrY 3410949 3411561 -48102023 + LTR36 LTR ERV1 1 611 0 180 0 0 0 chrY 3411687 3411707 -48101877 + (A)n Simple_repeat Simple_repeat 1 20 0 223 298 83 50 chrY 3412165 3412318 -48101266 - MIR SINE MIR -66 142 19 780 323 23 19 chrY 3414153 3414413 -48099171 + MIR SINE MIR 2 262 0 4552 279 102 33 chrY 3414838 3418861 -48094723 + L1PA12 LINE L1 9 4404 -3180 2632 224 32 18 chrY 3418857 3419579 -48094005 + L1 LINE L1 5484 6215 -1369 * 2645 88 98 5 chrY 3419579 3419989 -48093595 + LTR7 LTR ERV1 1 448 -2 19696 104 20 12 chrY 3419991 3422955 -48090629 + HERVH LTR ERV1 1 2987 -4726 808 157 27 0 chrY 3422949 3423096 -48090488 + HERVH LTR ERV1 3140 3290 -4423 * 3400 103 4 4 chrY 3423095 3423589 -48089995 + HERVH LTR ERV1 3500 3993 -3720 4316 145 0 3 chrY 3423591 3424255 -48089329 + HERVH LTR ERV1 4488 5149 -2564 1340 103 25 5 chrY 3424270 3424474 -48089110 + HERVH LTR ERV1 5612 5819 -1894 * 2312 106 53 13 chrY 3424472 3424849 -48088735 + HERVH LTR ERV1 7322 7713 0 2623 86 100 5 chrY 3424849 3425258 -48088326 + LTR7 LTR ERV1 1 448 -2 1980 219 60 14 chrY 3425261 3425937 -48087647 + L1PA16 LINE L1 4774 5475 -691 25426 35 1 0 chrY 3425964 3429865 -48083719 - L1PA3 LINE L1 0 6155 2268 10223 61 11 8 chrY 3429866 3431217 -48082367 + L1P LINE L1 676 2030 -4116 3435 157 64 24 chrY 3431219 3431894 -48081690 + L1PA16 LINE L1 5464 6165 -1 24 0 0 0 chrY 3431911 3431935 -48081649 + AT_rich Low_complexity Low_complexity 1 24 0 264 330 28 9 chrY 3432070 3432179 -48081405 - MER20B DNA MER1_type -613 170 60 457 281 47 18 chrY 3432186 3432357 -48081227 + MER69A DNA AcHobo 2 177 0 255 31 0 0 chrY 3433003 3433035 -48080549 + (T)n Simple_repeat Simple_repeat 1 32 0 1626 146 168 76 chrY 3433804 3434174 -48079410 - MER4A LTR ERV1 0 664 261 303 130 0 0 chrY 3434181 3434227 -48079357 - MER4A LTR ERV1 -573 91 46 532 206 57 86 chrY 3434300 3434475 -48079109 - MER58C DNA MER1_type -2 213 44 268 348 0 0 chrY 3434848 3434940 -48078644 - LTR16B LTR ERVL -140 324 233 420 355 14 0 chrY 3434978 3435119 -48078465 - LTR16B LTR ERVL -318 146 4 26 30 0 0 chrY 3435246 3435279 -48078305 + AT_rich Low_complexity Low_complexity 1 33 0 1689 93 0 16 chrY 3435279 3435526 -48078058 - L1MA1 LINE L1 0 6302 6060 2989 191 67 19 chrY 3435541 3435582 -48078002 - L1 LINE L1 -2392 4456 4418 2097 112 20 0 chrY 3435582 3435877 -48077707 - AluSg SINE Alu -9 301 1 2989 191 67 19 chrY 3435877 3436661 -48076923 - L1 LINE L1 -2430 4418 3592 1143 184 29 0 chrY 3436663 3436860 -48076724 - MER41C LTR ERV1 0 554 349 378 61 0 0 chrY 3436860 3436909 -48076675 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 301 0 0 chrY 3436922 3437005 -48076579 - L1MC4 LINE L1 -1346 6696 6614 251 250 0 22 chrY 3437005 3437097 -48076487 - L1MC4 LINE L1 -1339 6703 6614 189 147 0 0 chrY 3437097 3437131 -48076453 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 316 269 0 43 chrY 3437134 3437227 -48076357 + L1MC4 LINE L1 6615 6703 -1339 357 289 0 0 chrY 3437229 3437319 -48076265 - L1MC4 LINE L1 -1339 6703 6614 345 300 0 0 chrY 3437243 3437333 -48076251 + L1MC4 LINE L1 6614 6703 -1339 * 1960 130 47 3 chrY 3437353 3437653 -48075931 - MER41C LTR ERV1 -241 313 1 2919 259 25 9 chrY 3437653 3439146 -48074438 - L1 LINE L1 -3255 3593 2077 1234 223 68 7 chrY 3439720 3439998 -48073586 - AluJo SINE Alu -7 295 1 2429 253 53 14 chrY 3440231 3441286 -48072298 - L1M4c LINE L1 -2299 4658 3563 1084 289 45 40 chrY 3441401 3442147 -48071437 - L1M4c LINE L1 -4391 2566 1759 1192 42 0 0 chrY 3442158 3442302 -48071282 - L1PA3 LINE L1 -3 6152 6009 593 29 0 0 chrY 3442302 3442372 -48071212 + L1P1 LINE L1 5701 5770 -385 316 181 183 17 chrY 3442401 3442556 -48071028 - L1M4c LINE L1 -5107 1748 1563 2512 162 24 2 chrY 3442566 3442985 -48070599 + MSTA LTR MaLR 1 428 0 5640 220 18 11 chrY 3442985 3444138 -48069446 + MSTA-int LTR MaLR 1 1161 -490 1845 153 23 3 chrY 3444138 3444439 -48069145 - MSTA LTR MaLR -119 309 3 708 152 32 0 chrY 3444441 3444566 -48069018 - MSTA-int LTR MaLR 0 1651 1523 1614 120 0 0 chrY 3444566 3444807 -48068777 + L1PA13 LINE L1 5915 6155 -8 2186 281 96 24 chrY 3444811 3445653 -48067931 - L1M4c LINE L1 -5888 971 69 363 324 60 0 chrY 3445721 3445903 -48067681 + LTR67 LTR ERVL 363 555 -2 5136 230 20 19 chrY 3446570 3447611 -48065973 - L1MC1 LINE L1 -6 6607 5568 4784 44 5 2 chrY 3447611 3448200 -48065384 - LTR10C LTR ERV1 0 591 1 5136 230 20 19 chrY 3448200 3449607 -48063977 - L1MC1 LINE L1 -1045 5568 4143 8957 210 84 42 chrY 3449616 3450408 -48063176 - L1MC1 LINE L1 -3709 2717 1960 1847 230 24 7 chrY 3450408 3450825 -48062759 - MSTB LTR MaLR 0 426 3 8957 210 84 42 chrY 3450825 3452608 -48060976 - L1MC1 LINE L1 -4466 1960 17 21 36 0 0 chrY 3453050 3453078 -48060506 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrY 3453113 3453135 -48060449 + (A)n Simple_repeat Simple_repeat 1 22 0 2227 121 0 7 chrY 3454044 3454349 -48059235 + AluSq SINE Alu 1 303 -10 316 232 36 27 chrY 3454933 3455045 -48058539 - L2 LINE L2 -518 2796 2684 473 257 57 54 chrY 3456055 3456294 -48057290 + L1PBb LINE L1 826 1063 -5140 2165 107 16 26 chrY 3456294 3456602 -48056982 - AluSp SINE Alu -8 305 1 473 257 57 54 chrY 3456602 3456807 -48056777 + L1PBb LINE L1 1063 1364 -4839 6846 197 78 23 chrY 3456808 3457705 -48055879 + L1P LINE L1 55 901 -5245 7353 33 0 0 chrY 3457705 3458587 -48054997 + L1PA4 LINE L1 5271 6152 -3 6846 197 78 23 chrY 3458587 3460034 -48053550 + L1P LINE L1 901 2549 -3597 22 0 0 0 chrY 3460453 3460475 -48053109 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chrY 3460695 3460720 -48052864 + (TG)n Simple_repeat Simple_repeat 2 26 0 4553 245 19 7 chrY 3460897 3462504 -48051080 + L1MA2 LINE L1 1 1730 -5835 * 5482 131 1 1 chrY 3462497 3463353 -48050231 + L1PA13 LINE L1 5307 6162 -1 6878 180 39 17 chrY 3463391 3464833 -48048751 + L1MA2 LINE L1 1716 3189 -4376 429 233 193 7 chrY 3464911 3465061 -48048523 - MER2 DNA MER2_type 0 345 168 281 193 0 18 chrY 3465115 3465172 -48048412 + MLT1G1 LTR MaLR 7 62 -533 5191 31 3 0 chrY 3465184 3465798 -48047786 - L1PA4 LINE L1 0 6155 5540 13543 180 25 11 chrY 3465798 3470279 -48043305 + L1MA2 LINE L1 3177 7723 0 227 86 0 0 chrY 3470557 3470592 -48042992 + L1M2 LINE L1 5767 5801 -490 275 313 78 43 chrY 3470603 3470718 -48042866 + MIR3 SINE MIR 46 164 -44 1950 145 13 0 chrY 3471137 3471441 -48042143 + AluSq SINE Alu 1 308 -5 2117 108 28 0 chrY 3471594 3471881 -48041703 + AluSq SINE Alu 1 295 -18 716 224 29 6 chrY 3472839 3473013 -48040571 + MER5B DNA MER1_type 1 178 0 851 250 64 74 chrY 3473170 3473466 -48040118 + L2 LINE L2 3019 3311 -2 2448 127 6 3 chrY 3474099 3474462 -48039122 - THE1B LTR MaLR 0 364 1 9621 138 16 31 chrY 3474462 3476065 -48037519 - THE1B-int LTR MaLR 0 1580 1 411 168 2 13 chrY 3476065 3476153 -48037431 - MSTA LTR MaLR 0 428 288 2065 177 58 3 chrY 3476578 3477011 -48036573 + LTR49 LTR ERV1 1 491 -131 2614 170 40 57 chrY 3477013 3477436 -48036148 + LTR29 LTR ERV1 1 430 -223 1571 177 3 14 chrY 3477436 3477781 -48035803 - AluSx SINE Alu 0 344 3 2614 170 40 57 chrY 3477781 3477794 -48035790 + LTR29 LTR ERV1 430 442 -211 2146 136 3 12 chrY 3477794 3478140 -48035444 - L1PB3 LINE L1 -1 6153 5811 2614 170 40 57 chrY 3478140 3478340 -48035244 + LTR29 LTR ERV1 442 648 -5 990 172 47 23 chrY 3478347 3478654 -48034930 + LTR29-int LTR ERV1 1 351 -5980 12808 204 41 15 chrY 3478659 3481160 -48032424 - L1M LINE L1 -743 5403 2814 2521 124 3 0 chrY 3481160 3481523 -48032061 - THE1B LTR MaLR 0 364 1 12808 204 41 15 chrY 3481523 3482166 -48031418 - L1M LINE L1 -3332 2814 2189 1905 150 137 8 chrY 3482167 3482546 -48031038 + MSTA LTR MaLR 1 428 0 1602 161 20 10 chrY 3482549 3482841 -48030743 + MSTA-int LTR MaLR 4 298 -1282 1388 174 0 23 chrY 3482834 3483093 -48030491 + MSTA-int LTR MaLR 631 883 -697 * 447 208 20 10 chrY 3483094 3483195 -48030389 + MSTA-int LTR MaLR 1541 1642 -9 330 155 0 0 chrY 3483218 3483276 -48030308 + MSTA LTR MaLR 371 428 0 16585 203 53 11 chrY 3483276 3486731 -48026853 - L1M1 LINE L1 -3954 3611 12 11940 180 55 49 chrY 3486747 3487012 -48026572 + LTR49-int LTR ERV1 3259 3521 -2810 396 0 0 0 chrY 3487012 3487056 -48026528 + (TG)n Simple_repeat Simple_repeat 1 44 0 261 53 0 0 chrY 3487056 3487094 -48026490 - L1PB3 LINE L1 -34 6120 6083 11940 180 55 49 chrY 3487094 3489842 -48023742 + LTR49-int LTR ERV1 3520 6327 -4 3034 154 47 24 chrY 3489849 3490422 -48023162 + LTR49 LTR ERV1 3 588 -7 2171 181 26 12 chrY 3490426 3490841 -48022743 - MSTA LTR MaLR -7 421 1 1836 258 50 47 chrY 3491137 3492033 -48021551 + L1MC5 LINE L1 6632 7530 -431 282 288 22 58 chrY 3492126 3492265 -48021319 + L1ME3A LINE L1 5967 6100 -70 622 274 43 11 chrY 3492277 3492463 -48021121 + L1ME3A LINE L1 5979 6170 0 1790 167 123 26 chrY 3492776 3493166 -48020418 + MSTA LTR MaLR 1 428 0 1790 76 8 19 chrY 3493193 3493456 -48020128 + MSTA-int LTR MaLR 1315 1574 -6 1866 165 134 11 chrY 3493462 3493843 -48019741 + MSTA LTR MaLR 1 428 0 676 310 41 20 chrY 3495648 3495893 -48017691 + MIR SINE MIR 3 252 -10 541 277 48 12 chrY 3496532 3496698 -48016886 + MIR SINE MIR 91 262 0 532 239 75 99 chrY 3497560 3497932 -48015652 - LTR24B LTR ERV1 -7 569 207 11106 239 34 28 chrY 3498165 3501254 -48012330 - L1PA16 LINE L1 -8 6809 3739 928 92 0 0 chrY 3501254 3501384 -48012200 - L1PB1 LINE L1 -6 6145 6016 11106 239 34 28 chrY 3501384 3501620 -48011964 - L1PA16 LINE L1 -3078 3739 3506 180 0 0 0 chrY 3501620 3501640 -48011944 + (TA)n Simple_repeat Simple_repeat 2 21 0 11106 239 34 28 chrY 3501640 3502361 -48011223 - L1PA16 LINE L1 -3311 3506 2791 1963 118 4 0 chrY 3502361 3502633 -48010951 + AluSq SINE Alu 34 306 -7 11106 239 34 28 chrY 3502633 3503487 -48010097 - L1PA16 LINE L1 -4026 2791 1867 1794 219 57 7 chrY 3503487 3503893 -48009691 - MSTB LTR MaLR 0 426 1 7251 226 12 40 chrY 3503893 3505585 -48007999 - MSTB-int LTR MaLR 0 1651 7 1877 179 23 89 chrY 3505606 3505853 -48007731 - MSTB LTR MaLR -15 411 204 2611 93 33 15 chrY 3505853 3506250 -48007334 - L1MA1 LINE L1 -9 6293 5890 1877 179 23 89 chrY 3506250 3506442 -48007142 - MSTB LTR MaLR -222 204 1 1090 246 50 169 chrY 3506442 3506845 -48006739 - L1PA16 LINE L1 -4935 1852 1500 340 321 9 9 chrY 3507551 3507660 -48005924 - MER110-int LTR ERV1 -783 6339 6231 22 0 0 0 chrY 3508761 3508783 -48004801 + AT_rich Low_complexity Low_complexity 1 22 0 276 329 66 48 chrY 3509147 3509375 -48004209 - MER110-int LTR ERV1 -2274 2373 2142 186 103 0 0 chrY 3509799 3509828 -48003756 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 281 336 24 24 chrY 3509945 3510153 -48003431 - MER110-int LTR ERV1 -3797 4938 4731 259 320 63 45 chrY 3510659 3510928 -48002656 - MER110-int LTR ERV1 -3640 3482 3209 419 336 41 0 chrY 3511194 3511340 -48002244 - MER110-int LTR ERV1 -4145 502 351 585 116 0 0 chrY 3511484 3511570 -48002014 + L1PA15 LINE L1 5513 5598 -568 5250 156 32 37 chrY 3511620 3512362 -48001222 + L1PA16 LINE L1 4576 5320 -846 1952 168 17 25 chrY 3512362 3512720 -48000864 + L1PA15 LINE L1 5811 6165 0 5250 156 32 37 chrY 3512720 3513569 -48000015 + L1PA16 LINE L1 5320 6166 0 23 0 0 0 chrY 3514181 3514204 -47999380 + AT_rich Low_complexity Low_complexity 1 23 0 262 111 0 0 chrY 3514936 3514972 -47998612 + L1 LINE L1 4882 4917 -1229 356 191 152 19 chrY 3514973 3515078 -47998506 - L1 LINE L1 -1265 4881 4763 792 248 124 0 chrY 3515416 3515618 -47997966 - AluJb SINE Alu -30 282 56 2190 108 0 10 chrY 3518099 3518405 -47995179 + AluY SINE Alu 1 303 -8 1189 244 3 7 chrY 3519668 3519951 -47993633 + AluJo SINE Alu 8 289 -23 1891 160 3 0 chrY 3519963 3520251 -47993333 + AluSx SINE Alu 6 294 -18 21 57 0 0 chrY 3521876 3521911 -47991673 + AT_rich Low_complexity Low_complexity 1 35 0 1511 177 54 0 chrY 3521964 3522241 -47991343 + AluSg SINE Alu 1 292 -18 396 82 0 0 chrY 3529388 3529449 -47984135 + (TG)n Simple_repeat Simple_repeat 2 62 0 235 188 0 47 chrY 3531734 3531798 -47981786 + CT-rich Low_complexity Low_complexity 1 61 0 794 257 27 54 chrY 3532108 3532404 -47981180 - AluJb SINE Alu -12 300 13 302 277 0 43 chrY 3532564 3532658 -47980926 + L1MC4 LINE L1 6614 6703 -1339 351 221 0 0 chrY 3532658 3532744 -47980840 + (TA)n Simple_repeat Simple_repeat 2 87 0 2170 260 55 57 chrY 3532898 3534618 -47978966 - L1MA8 LINE L1 -23 6268 4559 222 253 48 103 chrY 3538038 3538139 -47975445 + L2 LINE L2 2321 2413 -901 1576 207 3 7 chrY 3538139 3538444 -47975140 + AluSx SINE Alu 1 304 -8 222 253 48 103 chrY 3538444 3538488 -47975096 + L2 LINE L2 2413 2458 -856 1457 156 59 42 chrY 3538489 3538796 -47974788 + AluSx SINE Alu 1 312 0 2353 130 6 0 chrY 3538902 3539255 -47974329 - THE1A LTR MaLR 0 355 1 352 193 26 26 chrY 3540023 3540137 -47973447 + (TA)n Simple_repeat Simple_repeat 1 114 0 443 329 159 13 chrY 3540151 3540622 -47972962 - L1M4 LINE L1 -2743 3639 3100 476 195 12 0 chrY 3540698 3540780 -47972804 + AluSg/x SINE Alu 190 272 -38 288 0 0 0 chrY 3540787 3540819 -47972765 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 431 215 8 46 chrY 3542373 3542477 -47971107 + AluSg/x SINE Alu 185 285 -27 327 25 0 0 chrY 3542477 3542517 -47971067 + (CA)n Simple_repeat Simple_repeat 2 41 0 431 215 8 46 chrY 3542517 3542542 -47971042 + AluSg/x SINE Alu 285 309 -3 348 24 0 0 chrY 3542584 3542625 -47970959 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 0 0 0 chrY 3545942 3545964 -47967620 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 222 117 0 50 chrY 3549837 3549897 -47963687 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 210 91 0 0 chrY 3550108 3550141 -47963443 + (A)n Simple_repeat Simple_repeat 1 33 0 308 313 117 50 chrY 3550679 3550874 -47962710 - L1M4 LINE L1 -5019 1365 1142 876 238 30 34 chrY 3550874 3551172 -47962412 - AluJo SINE Alu -4 298 2 308 313 117 50 chrY 3551172 3551276 -47962308 - L1M4 LINE L1 -5242 1142 1046 306 0 0 0 chrY 3551314 3551348 -47962236 + (TG)n Simple_repeat Simple_repeat 2 35 0 2927 252 52 41 chrY 3551484 3552328 -47961256 - L1MA8 LINE L1 0 6291 5459 207 0 0 0 chrY 3552328 3552351 -47961233 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2927 252 52 41 chrY 3552351 3553226 -47960358 - L1MA8 LINE L1 -832 5459 4559 28 48 0 0 chrY 3555543 3555585 -47957999 + AT_rich Low_complexity Low_complexity 1 42 0 1738 205 0 0 chrY 3556776 3557078 -47956506 + AluSx SINE Alu 1 302 -10 1570 137 68 30 chrY 3557115 3557378 -47956206 + AluSx SINE Alu 1 273 -39 2451 119 6 0 chrY 3557520 3557873 -47955711 - THE1A LTR MaLR 0 355 1 348 212 26 0 chrY 3558645 3558758 -47954826 + (TA)n Simple_repeat Simple_repeat 1 116 0 561 330 136 5 chrY 3558769 3559211 -47954373 - L1M4 LINE L1 -2742 3404 2905 1428 292 38 36 chrY 3559239 3559770 -47953814 - HAL1 LINE L1 -462 2045 1504 2069 112 3 62 chrY 3559770 3560091 -47953493 - AluSp SINE Alu -11 302 1 1428 292 38 36 chrY 3560091 3560380 -47953204 - HAL1 LINE L1 -1003 1504 1217 198 250 132 26 chrY 3560659 3560735 -47952849 - L2 LINE L2 -50 3222 3139 1677 144 33 49 chrY 3560776 3561081 -47952503 + AluY SINE Alu 12 311 0 288 314 21 69 chrY 3561362 3561550 -47952034 - L2 LINE L2 -263 3009 2831 1587 182 10 27 chrY 3561551 3561848 -47951736 + AluSq SINE Alu 1 292 -21 1168 150 5 0 chrY 3561853 3562040 -47951544 + AluSp SINE Alu 123 310 -3 306 0 0 0 chrY 3562195 3562229 -47951355 + (CA)n Simple_repeat Simple_repeat 2 35 0 312 274 71 0 chrY 3562278 3562362 -47951222 + L1MC4 LINE L1 6614 6703 -1339 213 94 0 0 chrY 3562394 3562426 -47951158 + (CA)n Simple_repeat Simple_repeat 1 32 0 237 320 112 8 chrY 3562926 3563051 -47950533 - L2 LINE L2 -4 3309 3172 180 346 61 33 chrY 3563231 3563445 -47950139 - L2 LINE L2 -582 2732 2513 367 302 7 60 chrY 3563590 3563739 -47949845 - L2 LINE L2 -2 3311 3171 453 333 124 13 chrY 3563964 3564336 -47949248 - L2 LINE L2 -1310 2004 1592 24 32 0 0 chrY 3564696 3564727 -47948857 + AT_rich Low_complexity Low_complexity 1 31 0 192 311 16 0 chrY 3566103 3566164 -47947420 + L2 LINE L2 3246 3307 -6 724 256 49 67 chrY 3566675 3567019 -47946565 + MER93b LTR ERV1 34 371 -2 610 247 165 28 chrY 3567047 3567338 -47946246 + Charlie2 DNA MER1_type 1861 2191 -671 264 59 0 0 chrY 3567424 3567458 -47946126 + (TG)n Simple_repeat Simple_repeat 1 34 0 2039 124 7 7 chrY 3567458 3567740 -47945844 - AluSp SINE Alu -28 285 1 7318 36 2 0 chrY 3569038 3570204 -47943380 - L1PA4 LINE L1 -5 6150 4980 1142 23 0 0 chrY 3570204 3570333 -47943251 - AluYa5/8 SINE Alu -17 294 166 35188 70 15 1 chrY 3570333 3575251 -47938333 - L1PA4 LINE L1 -1156 4990 1 541 272 193 23 chrY 3575577 3575878 -47937706 - L2 LINE L2 -1177 2137 1786 938 218 38 85 chrY 3575878 3576046 -47937538 - AluSg SINE Alu 0 310 162 8737 56 2 0 chrY 3576046 3577951 -47935633 + L1PA4 LINE L1 4244 6154 -1 938 218 38 85 chrY 3577951 3578099 -47935485 - AluSg SINE Alu -148 162 9 816 327 80 35 chrY 3578103 3578700 -47934884 - L2 LINE L2 -1518 1796 1173 321 47 0 0 chrY 3579342 3579385 -47934199 + (TG)n Simple_repeat Simple_repeat 1 43 0 823 287 10 0 chrY 3579471 3579666 -47933918 + MIR SINE MIR 1 197 -65 227 296 99 0 chrY 3579666 3579747 -47933837 + MIR SINE MIR 52 140 -122 21 36 0 0 chrY 3580665 3580693 -47932891 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 3581806 3581827 -47931757 + AT_rich Low_complexity Low_complexity 1 21 0 466 225 0 42 chrY 3582657 3582777 -47930807 + MER41E LTR ERV1 1 115 -397 1793 185 36 74 chrY 3583146 3583751 -47929833 - LTR1 LTR ERV1 -91 694 113 1136 164 22 13 chrY 3583729 3583960 -47929624 - LTR1 LTR ERV1 -552 233 1 * 309 310 112 71 chrY 3586129 3586494 -47927090 - L1M2 LINE L1 -5712 1137 758 1757 183 0 3 chrY 3589789 3589805 -47923779 - AluSx SINE Alu -10 302 287 423 0 0 0 chrY 3589805 3589852 -47923732 + (TG)n Simple_repeat Simple_repeat 2 48 0 1757 183 0 3 chrY 3589852 3590136 -47923448 - AluSx SINE Alu -25 287 3 1806 171 20 0 chrY 3591916 3592209 -47921375 - AluSx SINE Alu -8 304 6 1135 264 40 0 chrY 3592220 3592378 -47921206 - AluJo SINE Alu -21 291 116 207 0 0 0 chrY 3592378 3592401 -47921183 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1135 264 40 0 chrY 3592401 3592515 -47921069 - AluJo SINE Alu -196 116 8 811 249 124 0 chrY 3595298 3595499 -47918085 + AluJb SINE Alu 57 282 -30 360 0 0 0 chrY 3595536 3595576 -47918008 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chrY 3595883 3595904 -47917680 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chrY 3596030 3596072 -47917512 + AT_rich Low_complexity Low_complexity 1 42 0 286 232 61 12 chrY 3604056 3604220 -47909364 + (TA)n Simple_repeat Simple_repeat 2 173 0 10579 134 11 11 chrY 3604667 3606572 -47907012 + L1PA7 LINE L1 2705 4608 -1538 5897 112 9 1 chrY 3606585 3607497 -47906087 + L1PA7 LINE L1 5232 6150 -4 250 219 29 29 chrY 3607497 3607602 -47905982 + (TA)n Simple_repeat Simple_repeat 1 105 0 283 392 17 0 chrY 3608158 3608278 -47905306 + L2 LINE L2 2921 3042 -271 14605 45 3 0 chrY 3608818 3611778 -47901806 - L1PA3 LINE L1 0 6155 3188 14244 47 1 0 chrY 3611780 3613537 -47900047 + L1PA3 LINE L1 1427 3185 -2961 289 275 35 0 chrY 3614042 3614213 -47899371 + (TA)n Simple_repeat Simple_repeat 1 177 0 534 196 14 22 chrY 3614263 3614452 -47899132 + (TA)n Simple_repeat Simple_repeat 1 190 -3072 18681 40 1 0 chrY 3614452 3617381 -47896203 + L1PA3 LINE L1 3213 6152 -3 534 196 14 22 chrY 3617381 3617551 -47896033 + (TA)n Simple_repeat Simple_repeat 190 3262 0 32 26 0 0 chrY 3617556 3617595 -47895989 + AT_rich Low_complexity Low_complexity 1 39 0 480 197 13 6 chrY 3617595 3617904 -47895680 + (TA)n Simple_repeat Simple_repeat 1 311 0 306 193 11 23 chrY 3617915 3618091 -47895493 + (TA)n Simple_repeat Simple_repeat 2 175 0 783 239 0 0 chrY 3618093 3618248 -47895336 + AluSg/x SINE Alu 141 295 -17 27 29 0 0 chrY 3618519 3618553 -47895031 + AT_rich Low_complexity Low_complexity 1 34 0 921 294 28 21 chrY 3619662 3619948 -47893636 - AluJo SINE Alu -14 288 1 21 0 0 0 chrY 3620062 3620083 -47893501 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chrY 3621361 3621386 -47892198 + (A)n Simple_repeat Simple_repeat 1 25 0 973 257 70 15 chrY 3621410 3621737 -47891847 - L1MB5 LINE L1 -13 6161 5817 743 196 178 18 chrY 3621762 3622123 -47891461 - L1MB5 LINE L1 -428 5746 5254 649 249 34 39 chrY 3622321 3622631 -47890953 - L1ME LINE L1 -614 5555 5254 22 35 0 0 chrY 3622994 3623023 -47890561 + AT_rich Low_complexity Low_complexity 1 29 0 1165 205 4 17 chrY 3624321 3624555 -47889029 + AluSx SINE Alu 56 286 -26 470 247 34 31 chrY 3624565 3624613 -47888971 - L1MA5 LINE L1 -80 6220 6174 1333 232 0 29 chrY 3624613 3624923 -47888661 - AluJo SINE Alu -10 302 2 470 247 34 31 chrY 3624923 3625096 -47888488 - L1MA5 LINE L1 -126 6174 6000 261 301 37 68 chrY 3625454 3625617 -47887967 + L1M3de LINE L1 1282 1439 -5214 2041 152 3 0 chrY 3625744 3626047 -47887537 - AluSx SINE Alu -8 304 1 1311 135 5 0 chrY 3626098 3626311 -47887273 - AluSp SINE Alu 0 312 99 1249 229 3 50 chrY 3626610 3626907 -47886677 + AluSx SINE Alu 3 285 -17 30 27 0 0 chrY 3626907 3626944 -47886640 + AT_rich Low_complexity Low_complexity 1 37 0 1137 292 10 17 chrY 3626972 3627270 -47886314 - AluJo SINE Alu -5 297 2 2945 129 197 69 chrY 3627274 3627884 -47885700 - LTR12 LTR ERV1 0 688 1 3920 148 8 2 chrY 3627891 3628505 -47885079 - HERV9 LTR ERV1 -25 8374 7757 2242 199 99 62 chrY 3628500 3629350 -47884234 - Harlequin LTR ERV1 -5176 1720 840 * 5464 151 3 16 chrY 3629317 3630223 -47883361 - Harlequin LTR ERV1 -3425 4974 4080 13229 140 16 15 chrY 3630230 3633281 -47880303 - Harlequin LTR ERV1 -5260 3139 1 3615 120 173 40 chrY 3633281 3633888 -47879696 - LTR12 LTR ERV1 0 688 1 227 327 39 88 chrY 3633898 3634041 -47879543 + L1M3de LINE L1 482 614 -6039 1698 185 30 3 chrY 3634041 3634339 -47879245 - AluSx SINE Alu -6 306 1 227 327 39 88 chrY 3634339 3634400 -47879184 + L1M3de LINE L1 614 676 -5977 1407 215 89 54 chrY 3634678 3635083 -47878501 + MSTB LTR MaLR 4 422 -4 1627 189 0 30 chrY 3635289 3635590 -47877994 - AluY SINE Alu -18 293 2 883 325 47 29 chrY 3635698 3636147 -47877437 + L1M3b LINE L1 54 510 -5771 247 241 9 71 chrY 3636990 3637102 -47876482 + L1P LINE L1 3463 3567 -2579 361 318 105 7 chrY 3637421 3637573 -47876011 + AluJ/FLAM SINE Alu 1 87 -215 32 26 0 0 chrY 3638114 3638153 -47875431 + AT_rich Low_complexity Low_complexity 1 39 0 1172 82 6 0 chrY 3638257 3638427 -47875157 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 1259 227 0 31 chrY 3638453 3638744 -47874840 - AluSx SINE Alu -26 286 5 1336 255 3 3 chrY 3638797 3639099 -47874485 - AluSx SINE Alu 0 302 1 312 278 56 24 chrY 3639566 3639692 -47873892 - MLT1F LTR MaLR -27 515 386 275 108 14 40 chrY 3640521 3640595 -47872989 + (TA)n Simple_repeat Simple_repeat 1 72 0 24 0 0 0 chrY 3640862 3640886 -47872698 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrY 3641073 3641104 -47872480 + AT_rich Low_complexity Low_complexity 1 31 0 369 86 0 0 chrY 3643565 3643623 -47869961 + (CA)n Simple_repeat Simple_repeat 1 58 0 299 293 90 18 chrY 3643647 3643814 -47869770 - SST1 Satellite centromeric -11 1552 1374 241 333 0 10 chrY 3643969 3644068 -47869516 - SST1 Satellite centromeric -334 1229 1132 319 316 87 62 chrY 3644534 3645053 -47868531 - SST1 Satellite centromeric -969 594 63 271 77 15 62 chrY 3646046 3646111 -47867473 + (CA)n Simple_repeat Simple_repeat 1 62 0 251 315 56 48 chrY 3646981 3647232 -47866352 - SST1 Satellite centromeric -962 601 349 234 0 0 0 chrY 3648294 3648320 -47865264 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 243 247 25 0 chrY 3648529 3648610 -47864974 + (CA)n Simple_repeat Simple_repeat 1 83 0 208 184 20 20 chrY 3650980 3651029 -47862555 + (CA)n Simple_repeat Simple_repeat 2 50 0 246 333 0 12 chrY 3651373 3651454 -47862130 - SST1 Satellite centromeric -336 1227 1148 280 359 36 26 chrY 3651933 3652323 -47861261 - SST1 Satellite centromeric -963 600 207 225 164 33 16 chrY 3653432 3653493 -47860091 + (CA)n Simple_repeat Simple_repeat 1 62 0 267 299 115 19 chrY 3653514 3653671 -47859913 - SST1 Satellite centromeric -4 1559 1388 23 0 0 0 chrY 3655015 3655038 -47858546 + AT_rich Low_complexity Low_complexity 1 23 0 225 250 0 0 chrY 3655547 3655607 -47857977 + (CA)n Simple_repeat Simple_repeat 1 60 0 249 327 64 56 chrY 3655644 3656017 -47857567 - SST1 Satellite centromeric -25 1538 1163 254 60 0 80 chrY 3656778 3656828 -47856756 + (CA)n Simple_repeat Simple_repeat 2 47 0 292 347 54 46 chrY 3657740 3658201 -47855383 - SST1 Satellite centromeric -961 602 138 22 0 0 0 chrY 3658734 3658756 -47854828 + AT_rich Low_complexity Low_complexity 1 22 0 3834 66 2 4 chrY 3659038 3659371 -47854213 - L1PA3 LINE L1 -2 6153 5820 2262 82 0 10 chrY 3659371 3659664 -47853920 - AluY SINE Alu -13 298 9 3834 66 2 4 chrY 3659664 3659799 -47853785 - L1PA3 LINE L1 -335 5820 5686 2286 32 0 0 chrY 3659799 3660076 -47853508 + L1P LINE L1 4979 5255 -891 200 189 40 14 chrY 3660309 3660383 -47853201 + (CA)n Simple_repeat Simple_repeat 2 77 0 304 327 57 36 chrY 3661259 3661647 -47851937 - SST1 Satellite centromeric -961 602 207 216 158 0 0 chrY 3662559 3662597 -47850987 + T-rich Low_complexity Low_complexity 1 38 0 233 100 0 67 chrY 3662802 3662862 -47850722 + (CA)n Simple_repeat Simple_repeat 1 56 0 182 279 139 0 chrY 3663900 3663979 -47849605 + L3 LINE CR1 1397 1486 -91 9429 182 32 21 chrY 3665884 3668192 -47845392 + Harlequin LTR ERV1 1684 4094 -3719 3665 215 11 4 chrY 3668191 3669684 -47843900 + Harlequin LTR ERV1 4386 5999 -1814 * 577 285 0 0 chrY 3669692 3669815 -47843769 + Harlequin LTR ERV1 5467 5589 -1307 * 737 210 156 0 chrY 3669810 3669977 -47843607 + Harlequin LTR ERV1 6703 6895 -1 921 256 3 36 chrY 3669977 3670338 -47843246 + LTR2 LTR ERV1 1 449 0 231 61 0 0 chrY 3672624 3672657 -47840927 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 330 0 0 chrY 3673016 3673110 -47840474 - SST1 Satellite centromeric -324 1239 1146 198 0 0 0 chrY 3674962 3674984 -47838600 + (CA)n Simple_repeat Simple_repeat 1 22 0 180 77 0 0 chrY 3677356 3677382 -47836202 + (CA)n Simple_repeat Simple_repeat 1 26 0 202 146 18 18 chrY 3677499 3677554 -47836030 + (CA)n Simple_repeat Simple_repeat 2 56 0 299 328 48 40 chrY 3678461 3678836 -47834748 - SST1 Satellite centromeric -963 600 223 183 80 0 0 chrY 3680020 3680045 -47833539 + (A)n Simple_repeat Simple_repeat 1 25 0 309 328 58 31 chrY 3682111 3682633 -47830951 - SST1 Satellite centromeric -962 601 66 444 298 63 54 chrY 3684680 3685143 -47828441 - SST1 Satellite centromeric -965 598 132 252 154 0 0 chrY 3686176 3686228 -47827356 + (CA)n Simple_repeat Simple_repeat 1 52 0 2094 143 0 0 chrY 3687691 3687991 -47825593 + AluY SINE Alu 1 300 -11 284 268 14 0 chrY 3692590 3692661 -47820923 - SST1 Satellite centromeric -336 1227 1156 237 298 32 40 chrY 3693473 3693597 -47819987 - SST1 Satellite centromeric -1303 260 138 207 114 0 0 chrY 3694634 3694669 -47818915 + (CA)n Simple_repeat Simple_repeat 2 36 0 234 272 47 70 chrY 3695528 3695741 -47817843 - SST1 Satellite centromeric -1039 524 317 268 234 21 0 chrY 3696969 3697063 -47816521 + (CA)n Simple_repeat Simple_repeat 1 96 0 225 83 0 0 chrY 3699287 3699323 -47814261 + (CA)n Simple_repeat Simple_repeat 1 36 0 281 319 55 40 chrY 3700314 3700643 -47812941 - SST1 Satellite centromeric -1039 524 191 250 244 22 0 chrY 3701750 3701840 -47811744 + (CA)n Simple_repeat Simple_repeat 1 92 0 234 143 0 0 chrY 3703430 3703479 -47810105 + (CA)n Simple_repeat Simple_repeat 2 50 0 258 95 0 0 chrY 3705659 3705701 -47807883 + (T)n Simple_repeat Simple_repeat 1 42 0 268 306 50 71 chrY 3706909 3707291 -47806293 - SST1 Satellite centromeric -963 600 227 183 114 0 0 chrY 3708146 3708181 -47805403 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 196 161 32 0 chrY 3708388 3708450 -47805134 + (CA)n Simple_repeat Simple_repeat 1 64 0 248 304 0 0 chrY 3708798 3708867 -47804717 - SST1 Satellite centromeric -339 1224 1156 294 87 0 0 chrY 3710797 3710843 -47802741 + (CA)n Simple_repeat Simple_repeat 1 46 0 17795 46 3 1 chrY 3711005 3713963 -47799621 - L1PA4 LINE L1 -1 6154 3189 1590 39 0 0 chrY 3713958 3714164 -47799420 + L1PA4 LINE L1 2979 3184 -2962 * 180 179 0 0 chrY 3715706 3715745 -47797839 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 284 14 14 chrY 3716122 3716196 -47797388 - SST1 Satellite centromeric -334 1229 1156 262 282 32 40 chrY 3716979 3717103 -47796481 - SST1 Satellite centromeric -1303 260 138 203 111 0 74 chrY 3718144 3718198 -47795386 + (CA)n Simple_repeat Simple_repeat 1 50 0 195 42 0 0 chrY 3718367 3718391 -47795193 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 227 338 0 0 chrY 3721133 3721210 -47792374 - SST1 Satellite centromeric -339 1224 1148 318 26 0 0 chrY 3723177 3723216 -47790368 + (CA)n Simple_repeat Simple_repeat 1 39 0 246 355 51 38 chrY 3724145 3724674 -47788910 - SST1 Satellite centromeric -962 601 66 234 107 27 53 chrY 3725620 3725695 -47787889 + (CA)n Simple_repeat Simple_repeat 1 73 0 374 296 68 52 chrY 3726560 3726810 -47786774 - SST1 Satellite centromeric -961 602 349 186 71 0 0 chrY 3727298 3727326 -47786258 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 285 214 20 10 chrY 3727550 3727648 -47785936 + (CA)n Simple_repeat Simple_repeat 2 100 0 263 319 60 57 chrY 3728492 3728740 -47784844 - SST1 Satellite centromeric -963 600 352 232 303 92 60 chrY 3730016 3730267 -47783317 - SST1 Satellite centromeric -1167 396 138 247 250 22 0 chrY 3731315 3731407 -47782177 + (CA)n Simple_repeat Simple_repeat 1 94 0 277 283 97 48 chrY 3731410 3731555 -47782029 - SST1 Satellite centromeric -25 1538 1387 230 287 85 60 chrY 3732393 3732710 -47780874 - SST1 Satellite centromeric -1102 461 137 542 306 66 46 chrY 3734665 3735119 -47778465 - SST1 Satellite centromeric -963 600 138 362 295 80 66 chrY 3737007 3737519 -47776065 - SST1 Satellite centromeric -962 601 83 180 97 0 0 chrY 3738533 3738564 -47775020 + (CA)n Simple_repeat Simple_repeat 2 32 0 245 290 103 19 chrY 3738588 3738743 -47774841 - SST1 Satellite centromeric -11 1552 1385 289 292 78 41 chrY 3739772 3740015 -47773569 - SST1 Satellite centromeric -1283 280 29 195 42 0 0 chrY 3740387 3740411 -47773173 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chrY 3740482 3740506 -47773078 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 222 62 0 0 chrY 3740629 3740661 -47772923 + (CA)n Simple_repeat Simple_repeat 1 32 0 6426 26 0 0 chrY 3740827 3741563 -47772021 + L1PA2 LINE L1 5412 6147 -8 26 50 0 0 chrY 3741628 3741668 -47771916 + AT_rich Low_complexity Low_complexity 1 40 0 339 149 0 0 chrY 3742510 3742584 -47771000 + (CA)n Simple_repeat Simple_repeat 1 74 0 310 309 77 77 chrY 3742608 3743013 -47770571 - SST1 Satellite centromeric -11 1552 1148 283 317 50 50 chrY 3743491 3743889 -47769695 - SST1 Satellite centromeric -959 604 207 185 83 28 0 chrY 3744978 3745014 -47768570 + (CA)n Simple_repeat Simple_repeat 1 37 0 342 276 58 46 chrY 3746024 3746198 -47767386 - SST1 Satellite centromeric -1039 524 349 388 300 74 74 chrY 3748939 3749329 -47764255 - SST1 Satellite centromeric -11 1552 1163 403 325 55 46 chrY 3750137 3750596 -47762988 - SST1 Satellite centromeric -962 601 139 28 0 0 0 chrY 3751146 3751174 -47762410 + AT_rich Low_complexity Low_complexity 1 28 0 273 29 0 0 chrY 3751438 3751472 -47762112 + (CA)n Simple_repeat Simple_repeat 2 35 0 508 304 66 33 chrY 3752195 3752590 -47760994 - SST1 Satellite centromeric -1039 524 117 180 167 0 0 chrY 3753620 3753668 -47759916 + (CA)n Simple_repeat Simple_repeat 1 48 0 243 315 83 79 chrY 3754569 3755074 -47758510 - SST1 Satellite centromeric -963 600 94 2367 192 35 53 chrY 3755963 3756567 -47757017 - LTR1 LTR ERV1 -104 681 89 650 165 8 25 chrY 3756572 3756693 -47756891 - LTR1 LTR ERV1 -666 119 1 252 286 91 0 chrY 3756858 3756935 -47756649 - LTR33A LTR ERVL -338 185 102 23 33 0 0 chrY 3757690 3757720 -47755864 + AT_rich Low_complexity Low_complexity 1 30 0 319 299 11 0 chrY 3757868 3757955 -47755629 - FRAM SINE Alu -10 156 69 436 54 0 27 chrY 3758406 3758480 -47755104 + (TA)n Simple_repeat Simple_repeat 1 72 0 327 319 0 69 chrY 3758521 3758665 -47754919 + L1MC4 LINE L1 6586 6719 -1323 180 0 0 0 chrY 3758669 3758689 -47754895 + (TA)n Simple_repeat Simple_repeat 2 21 0 1158 258 3 3 chrY 3759338 3759621 -47753963 + AluSx SINE Alu 1 283 -19 1264 211 0 14 chrY 3759690 3759969 -47753615 + AluSx SINE Alu 12 286 -26 1349 51 11 0 chrY 3759993 3760010 -47753574 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 1349 51 11 0 chrY 3760010 3760187 -47753397 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 420 245 7 116 chrY 3760976 3761123 -47752461 - FLAM_C SINE Alu -2 131 1 273 325 8 26 chrY 3761240 3761357 -47752227 + MLT1E LTR MaLR 361 475 -118 207 0 0 0 chrY 3761366 3761389 -47752195 + (TG)n Simple_repeat Simple_repeat 2 24 0 609 352 60 33 chrY 3762399 3762851 -47750733 - L1M3b LINE L1 -5771 510 47 1618 205 0 22 chrY 3762930 3763242 -47750342 + AluY SINE Alu 2 306 -5 1146 234 54 56 chrY 3763447 3763874 -47749710 - MSTB1 LTR MaLR -6 426 1 244 332 18 73 chrY 3764147 3764208 -47749376 - L1M3de LINE L1 -5977 676 613 1971 151 3 3 chrY 3764208 3764512 -47749072 + AluSx SINE Alu 1 304 -8 244 332 18 73 chrY 3764512 3764670 -47748914 - L1M3de LINE L1 -6040 613 469 18756 124 44 43 chrY 3764670 3768252 -47745332 + HERV17 LTR ERV1 6 3139 -236 5359 128 6 10 chrY 3768259 3769128 -47744456 + HERV17 LTR ERV1 4080 4944 -3455 1586 187 59 57 chrY 3769129 3770138 -47743446 + HERV17 LTR ERV1 706 1720 -5176 * 3302 138 74 2 chrY 3770134 3770713 -47742871 + HERV17 LTR ERV1 7758 8378 -21 3190 143 283 0 chrY 3770716 3771138 -47742446 + LTR12 LTR ERV1 1 303 -523 2868 10 0 0 chrY 3771138 3771449 -47742135 + AluY SINE Alu 1 311 0 3190 143 283 0 chrY 3771449 3771670 -47741914 + LTR12 LTR ERV1 303 826 0 1095 269 3 29 chrY 3771674 3771983 -47741601 + AluJo SINE Alu 2 302 0 1217 254 3 17 chrY 3772033 3772321 -47741263 - AluSx SINE Alu -16 286 3 1422 129 5 0 chrY 3772623 3772825 -47740759 + AluSp SINE Alu 102 304 -9 648 141 0 0 chrY 3772881 3772980 -47740604 + AluS SINE Alu 1 99 -214 366 277 39 0 chrY 3772993 3773147 -47740437 + L1MA4 LINE L1 6013 6176 -124 580 264 34 34 chrY 3773148 3773326 -47740258 + AluJb SINE Alu 2 179 -133 27 0 0 0 chrY 3774612 3774639 -47738945 + AT_rich Low_complexity Low_complexity 1 27 0 835 286 19 19 chrY 3774747 3775006 -47738578 + AluJo SINE Alu 2 260 -52 25 0 0 0 chrY 3775530 3775555 -47738029 + AT_rich Low_complexity Low_complexity 1 25 0 1424 227 0 3 chrY 3775837 3776136 -47737448 - AluSg SINE Alu -12 298 1 353 81 16 0 chrY 3776142 3776204 -47737380 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 21 36 0 0 chrY 3776216 3776244 -47737340 + AT_rich Low_complexity Low_complexity 1 28 0 7115 50 0 0 chrY 3777270 3778743 -47734841 - L1PA4 LINE L1 -1 6154 4687 2933 41 18 0 chrY 3778743 3779137 -47734447 + L1PA4 LINE L1 4301 4701 -1445 189 394 21 0 chrY 3779163 3779257 -47734327 - L2 LINE L2 -290 3023 2928 180 269 39 0 chrY 3779430 3779482 -47734102 - L2 LINE L2 -713 2601 2548 272 251 55 6 chrY 3779783 3779946 -47733638 + (TA)n Simple_repeat Simple_repeat 2 172 0 6013 101 6 6 chrY 3779946 3780860 -47732724 - L1PA7 LINE L1 -4 6150 5231 9641 142 45 9 chrY 3780872 3782709 -47730875 - L1PA7 LINE L1 -1538 4608 2706 31 0 0 0 chrY 3783014 3783045 -47730539 + AT_rich Low_complexity Low_complexity 1 31 0 230 257 68 0 chrY 3783072 3783220 -47730364 + (TA)n Simple_repeat Simple_repeat 2 159 0 5909 101 15 26 chrY 3786252 3787213 -47726371 - MER11C LTR ERVK 0 1071 122 6294 27 7 0 chrY 3787213 3787951 -47725633 + L1PA2 LINE L1 5409 6151 -4 30 45 0 0 chrY 3787951 3787995 -47725589 + AT_rich Low_complexity Low_complexity 1 44 0 1014 72 20 3 chrY 3788040 3788194 -47725390 - MER11B LTR ERVK -1006 260 1 239 286 6 57 chrY 3792822 3792997 -47720587 + CT-rich Low_complexity Low_complexity 1 166 0 33 43 0 0 chrY 3793618 3793665 -47719919 + AT_rich Low_complexity Low_complexity 1 47 0 375 23 0 0 chrY 3794113 3794157 -47719427 + (TG)n Simple_repeat Simple_repeat 1 44 0 782 255 68 0 chrY 3794182 3794374 -47719210 - AluJb SINE Alu -30 282 78 4115 86 2 9 chrY 3796461 3797034 -47716550 - L1PA5 LINE L1 0 6154 5586 1731 95 8 8 chrY 3797034 3797343 -47716241 + L1PA5 LINE L1 5337 5574 -580 1149 248 3 18 chrY 3798027 3798313 -47715271 + AluJo SINE Alu 8 289 -23 1670 170 21 18 chrY 3798325 3798608 -47714976 + AluSx SINE Alu 9 292 -20 25 90 0 0 chrY 3803094 3803161 -47710423 + AT_rich Low_complexity Low_complexity 1 67 0 3403 180 37 20 chrY 3804117 3804905 -47708679 - L1PA16 LINE L1 -9 6157 5357 13135 40 1 0 chrY 3804919 3806592 -47706992 - L1PA4 LINE L1 -918 5228 3555 7282 39 9 0 chrY 3806592 3807524 -47706060 + L1PA4 LINE L1 5215 6154 -1 22 0 0 0 chrY 3807703 3807725 -47705859 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chrY 3808003 3808044 -47705540 + AT_rich Low_complexity Low_complexity 1 41 0 240 308 53 8 chrY 3810104 3810275 -47703309 - L1M3 LINE L1 -642 5529 5352 190 324 27 27 chrY 3810734 3810808 -47702776 + MER5A DNA MER1_type 43 116 -73 423 0 0 0 chrY 3810891 3810961 -47702623 + (CA)n Simple_repeat Simple_repeat 1 117 0 423 0 0 0 chrY 3810961 3811008 -47702576 + (CA)n Simple_repeat Simple_repeat 2 48 0 420 313 121 29 chrY 3812109 3812390 -47701194 - L2 LINE L2 -812 2502 2196 278 266 23 0 chrY 3818092 3818220 -47695364 + (TA)n Simple_repeat Simple_repeat 1 131 0 21 0 0 0 chrY 3818637 3818658 -47694926 + AT_rich Low_complexity Low_complexity 1 21 0 205 343 37 19 chrY 3818677 3818785 -47694799 - MIR3 SINE MIR -89 119 10 226 300 82 18 chrY 3819756 3819866 -47693718 + MER117 DNA MER1_type 1 117 -80 264 262 287 8 chrY 3820084 3820206 -47693378 - MIR SINE MIR -7 255 100 949 142 5 63 chrY 3821829 3821992 -47691592 + MER34 LTR ERV1 11 163 -379 2525 118 6 3 chrY 3821992 3822355 -47691229 + THE1B LTR MaLR 1 364 0 949 142 5 63 chrY 3822355 3822381 -47691203 + MER34 LTR ERV1 163 189 -353 730 251 50 82 chrY 3822515 3822834 -47690750 + L2 LINE L2 3005 3313 0 2013 112 7 4 chrY 3822992 3823270 -47690314 + AluSx SINE Alu 3 281 -31 458 17 0 17 chrY 3823273 3823333 -47690251 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 22 70 0 0 chrY 3823540 3823583 -47690001 + AT_rich Low_complexity Low_complexity 1 43 0 374 285 81 41 chrY 3823777 3824023 -47689561 - L1MC/D LINE L1 -844 5515 5260 709 278 17 0 chrY 3824278 3824458 -47689126 + MER5A DNA MER1_type 2 184 -5 1852 200 28 16 chrY 3824577 3825025 -47688559 + MER89 LTR ERV1 6 559 0 1714 92 103 22 chrY 3826179 3826452 -47687132 - AluY SINE Alu -16 295 1 279 286 42 74 chrY 3826583 3826772 -47686812 + MLT1K LTR MaLR 403 585 -3 259 270 16 0 chrY 3827174 3827244 -47686340 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 280 161 36 0 chrY 3827560 3827616 -47685968 + Alu SINE Alu 245 302 0 27 0 0 0 chrY 3827649 3827676 -47685908 + AT_rich Low_complexity Low_complexity 1 27 0 1348 271 31 29 chrY 3827709 3828162 -47685422 + MER31B LTR ERV1 13 466 0 245 222 16 0 chrY 3828174 3828237 -47685347 - L1ME1 LINE L1 -86 6080 6017 25 31 0 0 chrY 3828250 3828282 -47685302 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chrY 3829688 3829723 -47683861 + AT_rich Low_complexity Low_complexity 1 35 0 2290 103 3 0 chrY 3830308 3830618 -47682966 - AluY SINE Alu 0 311 1 348 64 0 0 chrY 3831370 3831417 -47682167 + (TG)n Simple_repeat Simple_repeat 2 48 0 2083 105 3 7 chrY 3831487 3831782 -47681802 + AluSq SINE Alu 1 294 -19 193 325 48 36 chrY 3831894 3831977 -47681607 + L2 LINE L2 3189 3272 0 191 284 40 14 chrY 3832054 3832128 -47681456 - MIR3 SINE MIR -3 205 130 2177 178 31 5 chrY 3832129 3832550 -47681034 + MSTB1 LTR MaLR 1 432 0 461 250 56 19 chrY 3833198 3833358 -47680226 - HAL1 LINE L1 -131 2376 2211 528 310 6 6 chrY 3833407 3833565 -47680019 + LTR16B LTR ERVL 2 159 -305 331 293 12 0 chrY 3833569 3833651 -47679933 - Charlie1 DNA MER1_type -2678 83 1 241 94 0 0 chrY 3833731 3833763 -47679821 - Tigger1 DNA MER2_type 0 2418 2387 * 550 171 0 18 chrY 3833761 3833872 -47679712 + MSTB1 LTR MaLR 172 280 -152 * 12863 168 25 11 chrY 3833871 3836183 -47677401 - Tigger1 DNA MER2_type -30 2388 45 8485 260 33 48 chrY 3836190 3839386 -47674198 + L1PB3 LINE L1 10 3145 -3703 669 237 162 13 chrY 3839400 3839708 -47673876 - L1 LINE L1 -2988 3158 2805 6043 220 62 14 chrY 3839709 3842763 -47670821 + L1PB3 LINE L1 3149 6516 -340 342 0 0 0 chrY 3842763 3842801 -47670783 + (TA)n Simple_repeat Simple_repeat 1 38 0 6043 220 62 14 chrY 3842801 3843160 -47670424 + L1PB3 LINE L1 6516 6856 0 28 0 0 0 chrY 3843164 3843192 -47670392 + AT_rich Low_complexity Low_complexity 1 28 0 4952 189 57 9 chrY 3843210 3845261 -47668323 + L1MA4A LINE L1 4149 6298 -5 351 186 0 0 chrY 3845264 3845323 -47668261 - Tigger1 DNA MER2_type -2359 59 1 388 352 55 11 chrY 3846495 3846677 -47666907 + L3 LINE CR1 1379 1568 -9 532 371 4 9 chrY 3846727 3846959 -47666625 + L2 LINE L2 2160 2390 -924 341 307 16 8 chrY 3847043 3847170 -47666414 - MER91B DNA MER1_type -61 129 2 587 312 82 52 chrY 3847185 3847528 -47666056 + L2 LINE L2 2384 2736 -578 443 344 144 23 chrY 3848188 3848685 -47664899 + L2 LINE L2 2737 3300 -13 2122 95 34 0 chrY 3848993 3849287 -47664297 - AluY SINE Alu -7 304 1 247 309 55 27 chrY 3849288 3849398 -47664186 - L2 LINE L2 -22 3291 3179 1483 186 197 0 chrY 3849579 3849940 -47663644 + MER66A LTR ERV1 2 433 -45 22 0 0 0 chrY 3850558 3850580 -47663004 + AT_rich Low_complexity Low_complexity 1 22 0 1467 167 48 0 chrY 3851121 3851372 -47662212 - Tigger3(Golem) DNA MER2_type -1 3028 2766 1187 171 138 30 chrY 3852198 3852502 -47661082 - L1MC3 LINE L1 -21 7764 7428 2265 48 7 14 chrY 3852513 3852807 -47660777 - AluY SINE Alu -19 292 1 1385 250 121 13 chrY 3852808 3853204 -47660380 + MER31B LTR ERV1 7 445 -21 2335 188 22 53 chrY 3853207 3853713 -47659871 + MLT2B1 LTR ERVL 21 510 -10 4068 221 51 20 chrY 3853745 3854776 -47658808 - L1MC3 LINE L1 -352 7433 6371 2232 151 48 10 chrY 3854776 3855188 -47658396 + MSTA LTR MaLR 1 428 0 8641 186 22 7 chrY 3855188 3856815 -47656769 + MSTA-int LTR MaLR 1 1651 0 1930 152 53 6 chrY 3856818 3857160 -47656424 + MSTA LTR MaLR 4 361 -67 320 211 0 56 chrY 3857160 3857250 -47656334 - L1MC4 LINE L1 -1344 6698 6614 209 207 0 17 chrY 3857252 3857310 -47656274 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 372 96 0 0 chrY 3857313 3857365 -47656219 + MSTA LTR MaLR 377 428 0 4221 228 39 36 chrY 3857388 3858217 -47655367 - L1MC3 LINE L1 -748 5398 4573 6454 62 0 12 chrY 3858217 3859061 -47654523 + L1PA6 LINE L1 5321 6154 0 4221 228 39 36 chrY 3859061 3859090 -47654494 - L1MC3 LINE L1 -1573 4573 4546 1347 172 39 88 chrY 3859090 3859474 -47654110 - MLT1A1 LTR MaLR 0 365 1 4221 228 39 36 chrY 3859474 3860310 -47653274 - L1MC3 LINE L1 -1600 4546 4656 1905 157 0 0 chrY 3860310 3860610 -47652974 + AluSx SINE Alu 1 300 -12 4221 228 39 36 chrY 3860610 3860879 -47652705 - L1MC3 LINE L1 -1489 4657 4390 3057 147 85 5 chrY 3860947 3861533 -47652051 - L1PA16 LINE L1 -2 6164 5532 1818 224 30 72 chrY 3861534 3862064 -47651520 + MLT2B3 LTR ERVL 1 508 -46 8406 53 9 0 chrY 3862066 3863916 -47649668 - L1PA5 LINE L1 0 6154 4291 1909 23 0 0 chrY 3863916 3864135 -47649449 + L1P LINE L1 4027 4245 -1901 492 128 13 3 chrY 3864136 3864239 -47649345 + MLT2A2 LTR ERVL 386 453 0 * 3629 208 17 14 chrY 3864239 3865318 -47648266 - L1PA16 LINE L1 -631 5535 4448 186 71 0 0 chrY 3865318 3865346 -47648238 + (TG)n Simple_repeat Simple_repeat 1 28 0 3629 208 17 14 chrY 3865346 3865386 -47648198 - L1PA16 LINE L1 -1718 4448 4410 916 255 45 16 chrY 3865509 3866015 -47647569 - L1MC3 LINE L1 -2877 3269 2749 680 288 25 25 chrY 3866043 3866279 -47647305 + L1M4 LINE L1 24 259 -6283 9628 211 11 19 chrY 3866454 3867094 -47646490 + L1 LINE L1 17 660 -6905 2196 125 3 0 chrY 3867094 3867397 -47646187 + AluSq SINE Alu 1 304 -9 9628 211 11 19 chrY 3867397 3868686 -47644898 + L1 LINE L1 660 1931 -5634 972 192 4 73 chrY 3868688 3868775 -47644809 + L1 LINE L1 5235 5326 -2239 2356 100 0 0 chrY 3868775 3869085 -47644499 + AluSg SINE Alu 1 310 0 972 192 4 73 chrY 3869085 3869242 -47644342 + L1 LINE L1 5326 5462 -2103 243 143 0 0 chrY 3869243 3869278 -47644306 + MER61E LTR ERV1 531 565 -4 1657 269 52 37 chrY 3869291 3870093 -47643491 - L1ME3A LINE L1 -180 5990 5176 25 0 0 0 chrY 3870395 3870420 -47643164 + AT_rich Low_complexity Low_complexity 1 25 0 55 48 0 0 chrY 3872070 3872153 -47641431 + AT_rich Low_complexity Low_complexity 1 83 0 400 315 27 0 chrY 3872420 3872531 -47641053 - LTR16C LTR ERVL -314 177 64 239 208 217 19 chrY 3872641 3872747 -47640837 + MIR SINE MIR 122 248 -14 33 66 0 0 chrY 3872956 3873017 -47640567 + AT_rich Low_complexity Low_complexity 1 61 0 478 352 102 20 chrY 3873501 3873845 -47639739 + L2 LINE L2 2304 2675 -639 243 296 70 0 chrY 3873849 3873920 -47639664 + L2 LINE L2 3228 3303 -10 562 351 32 59 chrY 3874130 3874571 -47639013 + L2 LINE L2 2844 3272 0 1064 325 27 19 chrY 3874672 3875085 -47638499 + LTR16A LTR ERVL 30 445 -5 258 236 18 0 chrY 3875246 3875301 -47638283 + MER39 LTR ERV1 1 56 -651 * 811 269 71 47 chrY 3875296 3875660 -47637924 + MER39 LTR ERV1 335 707 0 246 283 74 30 chrY 3876145 3876279 -47637305 + LTR33A LTR ERVL 294 433 -88 191 167 24 0 chrY 3877454 3877496 -47636088 + CT-rich Low_complexity Low_complexity 2 44 0 4322 176 18 44 chrY 3877953 3878917 -47634667 - L1MA10 LINE L1 0 6334 5396 391 248 202 0 chrY 3878921 3879050 -47634534 + MER50 LTR ERV1 14 168 -566 1498 218 89 40 chrY 3879114 3879564 -47634020 + MER50 LTR ERV1 241 712 -22 3332 218 22 46 chrY 3879580 3880577 -47633007 - L1MA10 LINE L1 -745 5401 4443 1885 148 58 18 chrY 3880577 3880907 -47632677 - MER61A LTR ERV1 0 343 1 3332 218 22 46 chrY 3880907 3880918 -47632666 - L1MA10 LINE L1 -1703 4443 4433 24694 102 33 21 chrY 3880918 3883545 -47630039 - MER61A-int LTR ERV1 -11 5206 2519 4886 81 5 77 chrY 3883545 3884286 -47629298 - LTR12 LTR ERV1 0 688 1 24694 102 33 21 chrY 3884286 3885412 -47628172 - MER61A-int LTR ERV1 -2698 2519 1408 321 47 0 0 chrY 3885411 3885454 -47628130 - MER61A-int LTR ERV1 -3855 1362 1320 * 1321 170 31 40 chrY 3885447 3886052 -47627532 - MER61A-int LTR ERV1 -4440 777 1 1376 163 150 3 chrY 3886052 3886346 -47627238 - MER61A LTR ERV1 0 343 7 6539 219 65 47 chrY 3886348 3888583 -47625001 - L1MA10 LINE L1 -1698 4448 2172 24 0 0 0 chrY 3888594 3888618 -47624966 + AT_rich Low_complexity Low_complexity 1 24 0 4793 189 2 9 chrY 3888658 3889568 -47624016 - L1PA16 LINE L1 -6 6160 5257 1875 249 25 2 chrY 3889902 3890336 -47623248 + MLT1C LTR MaLR 3 446 -21 2007 205 29 20 chrY 3890336 3890784 -47622800 - MER66A LTR ERV1 0 478 27 756 235 0 0 chrY 3890791 3890927 -47622657 - MER66A-int LTR ERV1 0 6676 6541 437 210 56 31 chrY 3890927 3891089 -47622495 + L1M1 LINE L1 2711 3205 -4361 251 0 59 0 chrY 3891130 3891164 -47622420 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 271 362 8 16 chrY 3891854 3891981 -47621603 + L1PBb LINE L1 768 893 -5957 275 294 11 11 chrY 3892435 3892527 -47621057 + L1PBb LINE L1 1473 1564 -5285 * 10324 234 32 33 chrY 3892512 3897759 -47615825 + L1PA16 LINE L1 1335 6682 -187 40 87 0 0 chrY 3897788 3897891 -47615693 + AT_rich Low_complexity Low_complexity 1 103 0 333 150 159 9 chrY 3897896 3898009 -47615575 + L1MA7 LINE L1 6086 6215 -76 243 61 0 0 chrY 3898011 3898044 -47615540 + (TG)n Simple_repeat Simple_repeat 2 34 0 11423 166 27 2 chrY 3898050 3899872 -47613712 - L1PA12 LINE L1 -5712 1869 1 1264 325 61 103 chrY 3900447 3901191 -47612393 - L2 LINE L2 -2016 1298 524 1944 143 52 25 chrY 3901191 3901554 -47612030 + THE1C LTR MaLR 1 373 -2 229 62 31 0 chrY 3901554 3901586 -47611998 + THE1B LTR MaLR 332 364 0 1264 325 61 103 chrY 3901586 3902055 -47611529 - L2 LINE L2 -2788 526 106 36 70 0 0 chrY 3902454 3902525 -47611059 + AT_rich Low_complexity Low_complexity 1 71 0 3935 136 71 37 chrY 3902554 3903288 -47610296 - LTR1 LTR ERV1 0 785 27 571 293 68 60 chrY 3903398 3903798 -47609786 + L1ME1 LINE L1 2 404 -5641 1629 253 207 40 chrY 3903824 3904799 -47608785 + L1ME1 LINE L1 542 1353 -5211 1276 188 4 174 chrY 3904799 3905298 -47608286 - MLT2D LTR ERVL 0 414 1 1629 253 207 40 chrY 3905298 3905995 -47607589 + L1ME1 LINE L1 1353 1932 -4632 2316 108 3 0 chrY 3905995 3906300 -47607284 + AluSp SINE Alu 1 306 -7 1629 253 207 40 chrY 3906300 3906387 -47607197 + L1ME1 LINE L1 1932 2608 -3956 819 134 0 8 chrY 3906384 3906518 -47607066 - L1PA16 LINE L1 -263 5903 5771 * 785 164 16 28 chrY 3906505 3906733 -47606851 + L1PA16 LINE L1 5905 6165 -1 * 381 340 32 26 chrY 3906753 3907161 -47606423 + L1ME3 LINE L1 5482 5888 -274 * 41869 44 24 2 chrY 3907149 3913163 -47600421 + L1PA3 LINE L1 2 6155 0 1469 263 40 37 chrY 3913395 3914095 -47599489 + L1ME1 LINE L1 2618 3319 -3245 752 238 77 35 chrY 3914097 3914363 -47599221 + L1ME1 LINE L1 4120 4404 -2160 1990 216 41 5 chrY 3914363 3914774 -47598810 - MSTB LTR MaLR 0 426 1 752 238 77 35 chrY 3914774 3914847 -47598737 + L1ME1 LINE L1 4404 4473 -2091 * 3066 217 55 6 chrY 3914845 3915638 -47597946 + L1MC3 LINE L1 6945 7776 -9 1107 281 24 36 chrY 3915970 3916478 -47597106 - L1M LINE L1 -743 5403 4912 2383 267 35 34 chrY 3916503 3917687 -47595897 + L1ME1 LINE L1 5388 6569 -15 4031 153 24 1 chrY 3917840 3918537 -47595047 - L1MA1 LINE L1 -4 6298 5586 589 135 11 0 chrY 3918537 3918626 -47594958 - L1M1 LINE L1 -606 5696 5607 * 1823 205 14 0 chrY 3918625 3918995 -47594589 - L1M1 LINE L1 -1083 5063 4689 1488 223 8 51 chrY 3919095 3919450 -47594134 + MLT1A1 LTR MaLR 1 340 -25 6543 48 2 5 chrY 3919452 3920268 -47593316 - L1PA7 LINE L1 -13 6141 5328 2671 303 36 20 chrY 3920288 3921193 -47592391 - L1M4 LINE L1 -5621 921 2 3690 252 58 65 chrY 3921262 3923254 -47590330 - L1MDb LINE L1 -1525 4881 2904 5263 209 63 23 chrY 3923367 3924446 -47589138 - L1MC3 LINE L1 -9 7776 6627 1788 198 19 3 chrY 3924446 3924805 -47588779 + MLT1A1 LTR MaLR 1 365 0 5263 209 63 23 chrY 3924805 3925115 -47588469 - L1MC3 LINE L1 -1158 6627 6331 3696 228 40 24 chrY 3925131 3926307 -47587277 - L1MB4 LINE L1 -1 6179 5024 198 71 0 0 chrY 3926307 3926335 -47587249 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1710 173 7 0 chrY 3926338 3926622 -47586962 - AluJb SINE Alu -26 286 1 3696 228 40 24 chrY 3926622 3927284 -47586300 - L1MB4 LINE L1 -1157 5023 4309 462 255 68 0 chrY 3927274 3927466 -47586118 - L1M4 LINE L1 -807 5339 5135 * 860 257 49 6 chrY 3927445 3927791 -47585793 - L1MDb LINE L1 -3937 2469 2109 23 68 0 0 chrY 3927849 3927893 -47585691 + AT_rich Low_complexity Low_complexity 1 44 0 946 159 25 18 chrY 3927897 3928060 -47585524 - AluSg/x SINE Alu -20 292 129 2781 245 47 64 chrY 3928060 3929550 -47584034 - L1MDb LINE L1 -4458 1948 468 394 193 11 23 chrY 3930665 3930753 -47582831 + MER103 DNA DNA 6 92 -74 449 276 98 74 chrY 3931125 3931596 -47581988 + L1ME3A LINE L1 4364 4845 -1301 304 267 48 27 chrY 3931604 3931750 -47581834 + L1ME3A LINE L1 4904 5052 -1094 355 226 39 111 chrY 3931797 3932126 -47581458 + L1ME3A LINE L1 5185 5495 -669 1910 179 5 60 chrY 3932126 3932539 -47581045 - MLT1B LTR MaLR 0 390 1 414 302 92 8 chrY 3932659 3932981 -47580603 + L1ME3A LINE L1 5525 5883 -287 3129 173 45 21 chrY 3933007 3933712 -47579872 - L1M1 LINE L1 -4096 3469 2748 6540 215 21 25 chrY 3933779 3935408 -47578176 - L1 LINE L1 -1186 4960 3337 25 31 0 0 chrY 3935408 3935440 -47578144 + AT_rich Low_complexity Low_complexity 1 32 0 301 210 0 100 chrY 3935441 3935541 -47578043 + L1MC4 LINE L1 6614 6703 -1339 405 253 0 0 chrY 3935553 3935699 -47577885 + (TA)n Simple_repeat Simple_repeat 2 147 0 297 283 0 0 chrY 3935771 3935923 -47577661 + (TA)n Simple_repeat Simple_repeat 2 153 0 277 255 0 32 chrY 3935924 3936018 -47577566 + L1MC4 LINE L1 6613 6703 -1339 1782 132 10 28 chrY 3936021 3936309 -47577275 - AluSx SINE Alu -29 283 1 2706 242 39 18 chrY 3936309 3937155 -47576429 - L1 LINE L1 -2801 3345 2482 11922 184 29 47 chrY 3937184 3937812 -47575772 + L1P LINE L1 2386 3024 -3122 1845 148 7 16 chrY 3937812 3938116 -47575468 + AluSx SINE Alu 6 306 -6 11922 184 29 47 chrY 3938116 3940409 -47573175 + L1P LINE L1 3024 5253 -893 6937 59 5 2 chrY 3940409 3941306 -47572278 + L1PA7 LINE L1 5254 6152 -2 3022 269 28 22 chrY 3941319 3941787 -47571797 - L1PBb LINE L1 -3654 2549 2085 1737 248 41 5 chrY 3941787 3942198 -47571386 + MSTB LTR MaLR 1 426 0 3022 269 28 22 chrY 3942198 3942946 -47570638 - L1PBb LINE L1 -4118 2085 1318 4671 105 44 31 chrY 3942970 3944071 -47569513 + MER11A LTR ERVK 1 1071 0 1231 284 50 13 chrY 3944081 3945048 -47568536 - L1PBb LINE L1 -4995 1209 347 345 366 6 6 chrY 3945166 3945338 -47568246 - L1PBb LINE L1 -5848 356 185 347 309 67 43 chrY 3945485 3945695 -47567889 - L1PBa LINE L1 -5220 1643 1429 281 448 15 8 chrY 3945750 3946143 -47567441 - L1PBa LINE L1 -6397 466 71 3940 137 15 122 chrY 3946143 3947696 -47565888 - pTR5 LTR ERV1 0 2606 1524 471 213 158 55 chrY 3948689 3948961 -47564623 - L1ME1 LINE L1 -8 6158 5859 26 30 0 0 chrY 3948983 3949016 -47564568 + AT_rich Low_complexity Low_complexity 1 33 0 26 82 0 0 chrY 3949963 3950024 -47563560 + AT_rich Low_complexity Low_complexity 1 61 0 29 0 0 0 chrY 3950237 3950266 -47563318 + AT_rich Low_complexity Low_complexity 1 29 0 2305 137 58 35 chrY 3950421 3950940 -47562644 - MLT2A2 LTR ERVL 0 554 2 8084 216 28 27 chrY 3951465 3953659 -47559925 + L1M2 LINE L1 3289 5490 -743 499 227 10 0 chrY 3953660 3953757 -47559827 + L1MCa LINE L1 407 504 -5922 1918 240 79 15 chrY 3953758 3953799 -47559785 - MLT2B3 LTR ERVL 0 554 517 320 0 25 0 chrY 3953799 3953839 -47559745 + (GA)n Simple_repeat Simple_repeat 2 42 0 1918 240 79 15 chrY 3953839 3954317 -47559267 - MLT2B3 LTR ERVL -37 517 2 7626 226 51 44 chrY 3954318 3957250 -47556334 - ERVL LTR ERVL -7 5757 2813 332 182 40 7 chrY 3957250 3957398 -47556186 + (TA)n Simple_repeat Simple_repeat 1 153 0 29 70 0 0 chrY 3957737 3957794 -47555790 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chrY 3958496 3958519 -47555065 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrY 3958540 3958575 -47555009 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chrY 3958775 3958812 -47554772 + AT_rich Low_complexity Low_complexity 1 37 0 465 315 83 0 chrY 3958833 3959014 -47554570 - MIR SINE MIR -18 244 49 532 359 86 10 chrY 3959082 3959650 -47553934 - L2 LINE L2 -60 3253 2636 388 318 183 8 chrY 3959657 3959909 -47553675 - L2 LINE L2 -900 2414 2119 261 0 0 0 chrY 3960156 3960185 -47553399 + (TG)n Simple_repeat Simple_repeat 2 30 0 184 170 38 0 chrY 3960551 3960604 -47552980 + (TA)n Simple_repeat Simple_repeat 1 55 0 291 159 14 29 chrY 3960665 3960734 -47552850 - L1PA16 LINE L1 -1 7603 7536 12132 242 35 22 chrY 3960735 3964392 -47549192 - L1PA16 LINE L1 -105 7499 3750 2500 146 26 5 chrY 3964392 3964811 -47548773 + MSTA LTR MaLR 1 428 0 12132 242 35 22 chrY 3964811 3966365 -47547219 - L1PA16 LINE L1 -3854 3750 2217 276 284 0 0 chrY 3966632 3966713 -47546871 - L1PA16 LINE L1 -5398 2183 2103 698 346 59 41 chrY 3966830 3967419 -47546165 - L1PA16 LINE L1 -6187 1387 788 424 325 102 35 chrY 3967445 3967759 -47545825 - L2 LINE L2 -1812 1502 1168 524 348 100 58 chrY 3967826 3968359 -47545225 - L2 LINE L2 -2509 805 243 318 98 0 0 chrY 3968359 3968410 -47545174 + (TG)n Simple_repeat Simple_repeat 1 51 0 524 348 100 58 chrY 3968410 3968465 -47545119 - L2 LINE L2 -3071 243 192 249 327 10 48 chrY 3968662 3968766 -47544818 + MER5A DNA MER1_type 90 189 0 315 141 70 14 chrY 3968796 3968867 -47544717 + L1MCa LINE L1 1990 2064 -4362 * 331 306 10 0 chrY 3968821 3968919 -47544665 - L1MC4 LINE L1 -1340 6702 6604 27 0 0 0 chrY 3969011 3969038 -47544546 + AT_rich Low_complexity Low_complexity 1 27 0 442 281 73 37 chrY 3969358 3969604 -47543980 - MIR SINE MIR -3 259 5 30 27 0 0 chrY 3970296 3970333 -47543251 + AT_rich Low_complexity Low_complexity 1 37 0 1485 217 0 11 chrY 3970863 3971161 -47542423 - AluJo SINE Alu 0 307 13 632 241 88 72 chrY 3972213 3972656 -47540928 - L1MC4 LINE L1 -130 7912 7357 484 258 7 13 chrY 3972982 3973133 -47540451 + L1PBa LINE L1 43 192 -6671 25 65 0 0 chrY 3973444 3973490 -47540094 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chrY 3973674 3973712 -47539872 + AT_rich Low_complexity Low_complexity 1 38 0 3645 186 33 12 chrY 3973867 3974619 -47538965 - L1MB1 LINE L1 0 5992 5225 5073 230 49 19 chrY 3975087 3975792 -47537792 - L1MB1 LINE L1 -1188 4782 4099 2020 100 4 7 chrY 3975792 3976091 -47537493 + AluSc SINE Alu 1 298 0 5073 230 49 19 chrY 3976091 3976804 -47536780 - L1MB1 LINE L1 -1871 4099 3321 988 327 22 58 chrY 3976900 3977401 -47536183 - L1MB1 LINE L1 -5406 485 3 3018 181 34 47 chrY 3977603 3978303 -47535281 - LTR8 LTR ERV1 0 691 1 25 83 0 0 chrY 3979129 3979189 -47534395 + AT_rich Low_complexity Low_complexity 1 60 0 328 271 177 44 chrY 3979479 3979661 -47533923 - MLT1J LTR MaLR -89 526 238 447 331 54 29 chrY 3979978 3980220 -47533364 - MIR SINE MIR -12 250 3 1704 304 30 18 chrY 3980406 3980508 -47533076 - MLT1H1 LTR MaLR 0 555 456 1508 245 58 36 chrY 3980508 3981039 -47532545 - MER67A LTR ERV1 0 543 1 1704 304 30 18 chrY 3981039 3981479 -47532105 - MLT1H1 LTR MaLR -99 456 7 250 191 12 36 chrY 3981783 3981867 -47531717 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 198 0 0 0 chrY 3983334 3983356 -47530228 + (T)n Simple_repeat Simple_repeat 1 22 0 1375 337 65 27 chrY 3984126 3984942 -47528642 + ERVL LTR ERVL 3645 4491 -1273 896 335 46 27 chrY 3985108 3985754 -47527830 + ERVL LTR ERVL 4681 5333 -321 1711 303 30 10 chrY 3985939 3986447 -47527137 + LTR33 LTR ERVL 3 520 -1 12147 74 8 1 chrY 3986762 3989203 -47524381 + L1PA6 LINE L1 3725 6176 0 213 39 0 0 chrY 3990628 3990654 -47522930 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 206 229 21 21 chrY 3991660 3991708 -47521876 + L2 LINE L2 2734 2781 -533 297 0 0 0 chrY 3991760 3991793 -47521791 + (TC)n Simple_repeat Simple_repeat 1 33 0 270 0 0 0 chrY 3991792 3991822 -47521762 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 201 94 0 0 chrY 3991911 3991943 -47521641 + (TG)n Simple_repeat Simple_repeat 2 33 0 444 67 0 0 chrY 3991952 3992012 -47521572 + (GGA)n Simple_repeat Simple_repeat 1 60 0 417 312 7 35 chrY 3992117 3992258 -47521326 - MIR SINE MIR -99 163 27 219 114 0 0 chrY 3993227 3993262 -47520322 + (TG)n Simple_repeat Simple_repeat 2 36 0 252 0 0 0 chrY 3993888 3993916 -47519668 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chrY 3994544 3994565 -47519019 + AT_rich Low_complexity Low_complexity 1 21 0 365 304 8 8 chrY 3996030 3996155 -47517429 - L1ME1 LINE L1 -21 6145 6021 274 390 43 0 chrY 3996257 3996398 -47517186 + L2 LINE L2 1061 1207 -2107 23 0 0 0 chrY 3997783 3997806 -47515778 + AT_rich Low_complexity Low_complexity 1 23 0 1811 123 0 0 chrY 3999076 3999336 -47514248 - MER4D LTR ERV1 -2 870 611 1553 175 11 15 chrY 3999336 3999610 -47513974 - AluJb SINE Alu -39 273 1 269 297 28 28 chrY 3999625 3999770 -47513814 - L1ME LINE L1 -4598 1663 1519 377 289 69 19 chrY 3999789 3999948 -47513636 - L1ME LINE L1 -4670 1410 1244 612 249 92 59 chrY 3999980 4000318 -47513266 - L1ME LINE L1 -4817 1263 880 315 314 114 0 chrY 4000343 4000483 -47513101 - L1ME LINE L1 -5379 691 536 988 349 52 9 chrY 4000488 4000628 -47512956 - L1ME LINE L1 -5580 490 358 2002 82 86 0 chrY 4000628 4000907 -47512677 - AluSq SINE Alu -10 303 1 988 349 52 9 chrY 4000907 4001225 -47512359 - L1ME LINE L1 -5712 358 12 236 284 78 78 chrY 4001379 4001481 -47512103 + L3 LINE CR1 1329 1430 -147 185 265 20 0 chrY 4001502 4001551 -47512033 - L2 LINE L2 -6 3266 3217 229 130 0 37 chrY 4002066 4002120 -47511464 - L1MC4 LINE L1 -1339 6703 6652 21 36 0 0 chrY 4002598 4002626 -47510958 + AT_rich Low_complexity Low_complexity 1 28 0 5771 178 8 2 chrY 4003026 4004873 -47508711 - L1PB1 LINE L1 0 6867 5012 2664 201 42 0 chrY 4004871 4005393 -47508191 - L1PB1 LINE L1 -6188 675 132 * 21 36 0 0 chrY 4005416 4005444 -47508140 + AT_rich Low_complexity Low_complexity 1 28 0 1753 151 3 41 chrY 4005507 4005825 -47507759 - AluJo SINE Alu -6 306 1 836 189 13 6 chrY 4006143 4006302 -47507282 + MLT1E2 LTR MaLR 1 160 -466 1140 254 16 26 chrY 4006305 4006612 -47506972 + MLT1E2 LTR MaLR 319 622 -4 24 53 0 0 chrY 4007041 4007079 -47506505 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chrY 4008551 4008579 -47505005 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrY 4008758 4008800 -47504784 + AT_rich Low_complexity Low_complexity 1 42 0 796 271 75 18 chrY 4010390 4010670 -47502914 - L2 LINE L2 -22 3291 2996 208 206 65 122 chrY 4010963 4011061 -47502523 - MIR3 SINE MIR -15 193 100 384 22 0 0 chrY 4011061 4011106 -47502478 + (TG)n Simple_repeat Simple_repeat 1 45 0 665 100 0 0 chrY 4011419 4011519 -47502065 - L1MA1 LINE L1 0 6302 6203 1841 233 51 70 chrY 4011652 4012280 -47501304 + MLT1E2 LTR MaLR 11 626 0 1726 126 11 0 chrY 4012869 4013147 -47500437 - L1PB1 LINE L1 -5 6146 5866 207 0 0 0 chrY 4013147 4013170 -47500414 + (AATAG)n Simple_repeat Simple_repeat 4 26 0 11901 218 32 32 chrY 4013182 4013477 -47500107 - L1P3 LINE L1 -2610 3851 3558 8286 47 2 0 chrY 4013477 4014441 -47499143 + LTR5 LTR ERVK 1 966 -3 11901 218 32 32 chrY 4014441 4016692 -47496892 - L1P3 LINE L1 -2903 3558 1291 189 0 0 0 chrY 4016692 4016713 -47496871 + (TTG)n Simple_repeat Simple_repeat 1 21 0 11901 218 32 32 chrY 4016713 4017982 -47495602 - L1P3 LINE L1 -5170 1291 24 1429 97 0 0 chrY 4017986 4018182 -47495402 - L1PA7 LINE L1 0 6154 5959 28341 131 15 34 chrY 4018182 4023668 -47489916 - L1P3 LINE L1 -910 5551 10 1023 298 63 22 chrY 4025298 4025708 -47487876 - MLT1J2 LTR MaLR -19 431 5 624 109 33 0 chrY 4025777 4025869 -47487715 - THE1B LTR MaLR -13 351 257 1352 209 8 4 chrY 4026802 4027051 -47486533 - AluJb SINE Alu -30 282 33 1795 168 18 3 chrY 4027060 4027345 -47486239 - AluSx SINE Alu -15 297 9 1882 121 0 8 chrY 4027729 4027994 -47485590 - AluSg SINE Alu -13 297 35 1463 183 61 4 chrY 4028079 4028341 -47485243 + AluSx SINE Alu 21 297 -15 626 231 49 0 chrY 4028343 4028486 -47485098 + Tigger2 DNA MER2_type 2566 2715 -3 1578 221 58 25 chrY 4028500 4028985 -47484599 + L1MB4 LINE L1 5679 6179 -1 1099 224 39 39 chrY 4029174 4029509 -47484075 - L1MB5 LINE L1 0 6174 5840 5027 181 38 11 chrY 4029525 4030506 -47483078 - L1MC1 LINE L1 -1 6332 5326 2080 119 0 10 chrY 4030508 4030802 -47482782 - AluSg SINE Alu -14 296 6 757 182 98 0 chrY 4030807 4030950 -47482634 - FRAM SINE Alu -5 161 5 442 213 103 13 chrY 4030950 4031105 -47482479 - L1MB5 LINE L1 -344 5830 5662 1920 147 0 7 chrY 4031107 4031429 -47482155 + AluSg SINE Alu 1 310 0 1194 265 78 23 chrY 4031463 4032255 -47481329 - L1MB5 LINE L1 -501 5673 4817 21 0 0 0 chrY 4032457 4032478 -47481106 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrY 4033562 4033584 -47480000 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 38929 68 2 1 chrY 4033584 4039469 -47474115 - L1PA5 LINE L1 -11 6143 254 989 199 127 4 chrY 4039465 4039588 -47473996 - L1MB2 LINE L1 -106 6065 5943 * 293 251 108 36 chrY 4039588 4039738 -47473846 - L1MD1 LINE L1 -316 5926 5761 2048 110 119 3 chrY 4039738 4040074 -47473510 - MER51B LTR ERV1 -2 375 1 293 251 108 36 chrY 4040074 4040090 -47473494 - L1MD1 LINE L1 -481 5761 5748 7375 144 53 26 chrY 4040090 4041141 -47472443 - MER51B-int LTR ERV1 -15 7801 6780 2247 92 0 23 chrY 4041141 4041444 -47472140 - AluY SINE Alu -11 300 5 7375 144 53 26 chrY 4041444 4042361 -47471223 - MER51B-int LTR ERV1 -1036 6780 5551 1562 144 89 0 chrY 4042361 4042631 -47470953 - AluSg1 SINE Alu -15 294 1 7375 144 53 26 chrY 4042631 4042781 -47470803 - MER51B-int LTR ERV1 -2265 5551 5407 1800 131 20 9 chrY 4042758 4043155 -47470429 - MER51-int LTR ERV1 -2555 2662 2217 * 1734 150 73 34 chrY 4043167 4043604 -47469980 - MER51-int LTR ERV1 -2774 3172 1487 7489 124 77 15 chrY 4043607 4044333 -47469251 - MER51-int LTR ERV1 -4506 3310 2631 1920 183 93 30 chrY 4044333 4044793 -47468791 + LTR2B LTR ERV1 1 489 -1 7489 124 77 15 chrY 4044793 4045482 -47468102 - MER51-int LTR ERV1 -5185 2631 1807 660 166 50 68 chrY 4045483 4045682 -47467902 - MER4A LTR ERV1 -130 534 281 1088 152 25 0 chrY 4045739 4045937 -47467647 - MER51-int LTR ERV1 -6982 1138 936 1129 160 5 0 chrY 4045940 4046127 -47467457 - MER51-int LTR ERV1 -6593 1223 1036 * 3083 183 50 13 chrY 4046108 4046730 -47466854 - MER51-int LTR ERV1 -6996 820 176 262 263 0 26 chrY 4046752 4046828 -47466756 + HERVI LTR ERV1 101 174 -7611 320 317 4 8 chrY 4047754 4047896 -47465688 + GA-rich Low_complexity Low_complexity 1 239 0 3508 113 24 13 chrY 4047906 4048527 -47465057 + BaEV-int LTR ERV1 1919 2546 -4350 4117 288 46 42 chrY 4048703 4050400 -47463184 + BaEV-int LTR ERV1 4362 6064 -585 2955 83 21 3 chrY 4050650 4051165 -47462419 + LTR10C LTR ERV1 1 591 0 1199 81 5 48 chrY 4051165 4051351 -47462233 - MER51B-int LTR ERV1 -7638 178 1 2185 124 58 22 chrY 4051351 4051715 -47461869 - MER51B LTR ERV1 0 377 1 324 156 78 26 chrY 4051717 4051794 -47461790 - L1M3 LINE L1 -420 5763 5683 21 0 0 0 chrY 4051905 4051926 -47461658 + AT_rich Low_complexity Low_complexity 1 21 0 370 291 102 16 chrY 4054113 4054240 -47459344 - L2 LINE L2 -14 3299 3162 734 227 69 66 chrY 4054905 4055045 -47458539 - L1M4 LINE L1 -2444 3702 3564 1914 162 0 0 chrY 4055045 4055342 -47458242 - AluSc SINE Alu -11 298 2 734 227 69 66 chrY 4055342 4055518 -47458066 - L1M4 LINE L1 -2582 3564 3385 548 241 76 19 chrY 4055535 4055693 -47457891 - MER58A DNA MER1_type -16 208 42 944 280 78 28 chrY 4055768 4056001 -47457583 - L1M4 LINE L1 -2806 3340 3120 1113 279 49 14 chrY 4056001 4056428 -47457156 - LTR47B LTR ERVL -1 442 1 944 280 78 28 chrY 4056428 4056794 -47456790 - L1M4 LINE L1 -3026 3120 2711 295 244 13 0 chrY 4056991 4057069 -47456515 - MER116 DNA Mariner -1 79 1 660 216 7 15 chrY 4057994 4058168 -47455416 + L1MB3 LINE L1 5925 6095 -88 27 29 0 0 chrY 4058633 4058667 -47454917 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chrY 4059476 4059497 -47454087 + AT_rich Low_complexity Low_complexity 1 21 0 6608 80 0 4 chrY 4059499 4061212 -47452372 - L1PA7 LINE L1 -3 6151 4440 6325 207 38 20 chrY 4061229 4061952 -47451632 - L1PA7 LINE L1 -2550 3596 2888 2040 141 3 0 chrY 4061952 4062258 -47451326 - AluSc SINE Alu -2 307 1 6325 207 38 20 chrY 4062258 4063054 -47450530 - L1PA7 LINE L1 -3258 2888 2049 483 231 0 60 chrY 4063228 4063345 -47450239 + FRAM SINE Alu 48 157 -19 1689 206 16 32 chrY 4063366 4063739 -47449845 - Tigger2 DNA MER2_type -1987 731 365 1482 219 13 3 chrY 4063798 4064100 -47449484 - AluJo SINE Alu -1 311 7 1293 196 34 44 chrY 4064106 4064489 -47449095 - Tigger2 DNA MER2_type -2338 380 2 2883 227 36 46 chrY 4065297 4066368 -47447216 - L1MA6 LINE L1 0 6300 5289 217 184 20 0 chrY 4066519 4066568 -47447016 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 463 228 10 18 chrY 4066840 4067005 -47446579 - L1M3 LINE L1 -646 5534 5374 400 265 17 2 chrY 4067167 4067289 -47446295 + MER5A DNA MER1_type 3 138 -51 238 153 38 76 chrY 4067597 4067754 -47445830 + (TATAA)n Simple_repeat Simple_repeat 4 154 0 * 365 128 50 67 chrY 4067666 4067846 -47445738 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 339 186 43 37 chrY 4067858 4068019 -47445565 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 30 0 0 0 chrY 4068045 4068075 -47445509 + AT_rich Low_complexity Low_complexity 1 30 0 337 214 52 23 chrY 4068075 4068248 -47445336 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 269 199 30 23 chrY 4068315 4068446 -47445138 + (TTATA)n Simple_repeat Simple_repeat 3 134 0 40 37 0 0 chrY 4068654 4068708 -47444876 + AT_rich Low_complexity Low_complexity 1 54 0 972 230 19 5 chrY 4068848 4069057 -47444527 + AluJo SINE Alu 11 222 -90 312 281 61 0 chrY 4069058 4069140 -47444444 + AluJo SINE Alu 89 175 -127 973 246 11 8 chrY 4069143 4069403 -47444181 + AluJo SINE Alu 44 304 -8 288 291 101 7 chrY 4069413 4069561 -47444023 + L1M4 LINE L1 5 166 -6376 684 285 63 0 chrY 4069649 4069856 -47443728 - MER58A DNA MER1_type -4 220 1 641 190 0 36 chrY 4069917 4070054 -47443530 - FLAM_C SINE Alu -1 142 11 265 271 0 12 chrY 4070748 4070833 -47442751 - L1M4 LINE L1 -6376 166 83 2107 133 0 7 chrY 4071013 4071314 -47442270 - AluSq SINE Alu -14 299 1 1450 212 0 19 chrY 4071498 4071814 -47441770 - AluJo SINE Alu 0 312 3 610 276 109 0 chrY 4073004 4073196 -47440388 - MER20 DNA MER1_type -6 213 1 30 0 0 0 chrY 4073225 4073255 -47440329 + AT_rich Low_complexity Low_complexity 1 30 0 238 270 87 8 chrY 4073514 4073640 -47439944 - L1ME4a LINE L1 -19 6102 5967 184 309 36 0 chrY 4073779 4073834 -47439750 - L2 LINE L2 -22 3250 3194 292 245 167 52 chrY 4075422 4075614 -47437970 - MER41C LTR ERV1 -340 214 1 1259 254 17 17 chrY 4075661 4076020 -47437564 - MLT1A1 LTR MaLR -6 359 1 753 224 49 2 chrY 4076359 4076553 -47437031 + MER20 DNA MER1_type 1 219 0 642 236 10 51 chrY 4076825 4077020 -47436564 - MER5A DNA MER1_type -2 187 1 21 36 0 0 chrY 4078036 4078064 -47435520 + AT_rich Low_complexity Low_complexity 1 28 0 33561 107 14 13 chrY 4078451 4084572 -47429012 + L1PA6 LINE L1 11 6137 -17 210 129 48 0 chrY 4084575 4084637 -47428947 + (TA)n Simple_repeat Simple_repeat 2 66 0 5145 100 48 7 chrY 4084641 4085449 -47428135 + L1PA7 LINE L1 5313 6153 -1 213 167 24 0 chrY 4085763 4085805 -47427779 + (TA)n Simple_repeat Simple_repeat 1 43 0 1359 188 22 16 chrY 4085887 4086201 -47427383 - L1MA8 LINE L1 -22 6269 5954 521 161 21 0 chrY 4086201 4086294 -47427290 - MER66A LTR ERV1 0 478 384 10745 202 54 27 chrY 4086317 4089096 -47424488 - L1PB1 LINE L1 -5 6862 4160 2317 108 0 0 chrY 4089096 4089391 -47424193 + AluY SINE Alu 1 295 -16 10745 202 54 27 chrY 4089391 4092551 -47421033 - L1PB1 LINE L1 -2707 4160 621 823 176 28 34 chrY 4092551 4092727 -47420857 - HUERS-P3b LTR ERV1 -1382 6036 5862 235 307 117 24 chrY 4093040 4093245 -47420339 + L2 LINE L2 1758 1981 -1333 418 342 22 19 chrY 4093290 4093559 -47420025 + HERVI LTR ERV1 7378 7647 -138 2157 95 0 55 chrY 4095368 4095719 -47417865 - AluY SINE Alu 0 333 1 859 112 32 14 chrY 4095906 4096201 -47417383 + CT-rich Low_complexity Low_complexity 1 300 0 754 273 19 0 chrY 4096209 4096414 -47417170 - MER58A DNA MER1_type -12 212 4 287 304 78 17 chrY 4096514 4096629 -47416955 + FLAM_A SINE Alu 2 123 -10 2124 117 4 0 chrY 4097210 4097516 -47416068 + AluSq SINE Alu 1 307 0 349 325 42 0 chrY 4098352 4098472 -47415112 - L2 LINE L2 -3 3310 3186 323 387 43 18 chrY 4098538 4098866 -47414718 - L2 LINE L2 -1172 2142 1807 1555 234 47 20 chrY 4099295 4099740 -47413844 + MSTB2 LTR MaLR 1 457 0 277 205 55 16 chrY 4100206 4100333 -47413251 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 35 0 0 chrY 4101260 4101289 -47412295 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chrY 4101325 4101362 -47412222 + AT_rich Low_complexity Low_complexity 1 37 0 2549 111 22 3 chrY 4101781 4102149 -47411435 + THE1C LTR MaLR 1 375 0 3057 162 62 29 chrY 4102861 4103489 -47410095 - MER39B LTR ERV1 -4 649 1 373 267 163 12 chrY 4103644 4103816 -47409768 + MIR SINE MIR 58 255 -7 874 174 41 5 chrY 4103975 4104193 -47409391 - L1MA7 LINE L1 -11 6280 6055 239 262 0 0 chrY 4104319 4104380 -47409204 + MIR SINE MIR 199 259 -3 1517 143 57 0 chrY 4104444 4104709 -47408875 + MER7A DNA MER2_type 1 278 -68 499 174 54 0 chrY 4104801 4104893 -47408691 + MER7A DNA MER2_type 249 345 -1 25630 135 18 15 chrY 4105437 4111843 -47401741 - L1PA7 LINE L1 -1 6468 11 306 187 88 0 chrY 4111841 4111932 -47401652 - L1M4 LINE L1 -807 5339 5241 * 267 324 43 22 chrY 4112816 4112955 -47400629 - MIR3 SINE MIR -14 194 53 31 26 0 0 chrY 4113579 4113617 -47399967 + AT_rich Low_complexity Low_complexity 1 38 0 351 282 6 61 chrY 4114823 4114986 -47398598 - MER20 DNA MER1_type -64 155 2 190 268 0 54 chrY 4115626 4115682 -47397902 - MIR SINE MIR -140 122 70 1307 92 10 10 chrY 4116809 4117015 -47396569 - L1PA8A LINE L1 -223 6223 6018 29709 41 15 1 chrY 4117022 4123037 -47390547 + L1PA3 LINE L1 8 6155 0 19546 145 15 96 chrY 4123042 4125717 -47387867 - L1PA8A LINE L1 -416 6030 3575 2086 127 105 8 chrY 4125717 4126118 -47387466 - LTR7 LTR ERV1 -10 440 1 19546 145 15 96 chrY 4126118 4128329 -47385255 - L1PA8A LINE L1 -2871 3575 1187 4880 160 25 25 chrY 4128333 4129268 -47384316 - L1PA8A LINE L1 -4736 1139 205 313 281 116 30 chrY 4130894 4131058 -47382526 - MIR SINE MIR 0 262 85 1951 157 0 37 chrY 4131219 4131544 -47382040 - AluSq SINE Alu 0 313 1 221 335 40 40 chrY 4131657 4131809 -47381775 - MIR3 SINE MIR -27 181 30 184 333 0 19 chrY 4132053 4132107 -47381477 - MIR3 SINE MIR -13 195 143 421 341 52 6 chrY 4133521 4133694 -47379890 - MIR SINE MIR -10 252 72 227 328 42 25 chrY 4134116 4134235 -47379349 - MIR SINE MIR -56 206 86 273 282 28 0 chrY 4134649 4134720 -47378864 + GA-rich Low_complexity Low_complexity 6 78 0 2158 97 0 7 chrY 4136266 4136589 -47376995 + AluSc SINE Alu 1 309 0 304 282 32 34 chrY 4136635 4136753 -47376831 + MER5A DNA MER1_type 21 128 -50 28 29 0 0 chrY 4136753 4136788 -47376796 + AT_rich Low_complexity Low_complexity 1 35 0 425 155 0 0 chrY 4136796 4136880 -47376704 - L1MA7 LINE L1 -19 6272 6189 427 245 0 0 chrY 4136880 4136982 -47376602 + L1MB1 LINE L1 5795 5896 -293 375 277 40 0 chrY 4139790 4139891 -47373693 + MIR SINE MIR 88 192 -70 272 26 0 26 chrY 4140392 4140430 -47373154 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 972 338 57 7 chrY 4140909 4141367 -47372217 + L1M2 LINE L1 1 481 -6368 2804 290 68 21 chrY 4141691 4142553 -47371031 + L1M2 LINE L1 662 1581 -5268 243 0 0 0 chrY 4142553 4142580 -47371004 + (TG)n Simple_repeat Simple_repeat 2 28 0 2804 290 68 21 chrY 4142580 4142738 -47370846 + L1M2 LINE L1 1581 1730 -5119 6782 39 1 7 chrY 4143493 4144781 -47368803 - L1P2 LINE L1 -377 5778 4501 702 242 108 0 chrY 4144785 4145016 -47368568 + L1PA15 LINE L1 2584 2839 -4010 5040 122 2 1 chrY 4145018 4145852 -47367732 - L1P LINE L1 -2396 3750 2916 10432 104 8 0 chrY 4145852 4148190 -47365394 + L1PA7 LINE L1 3809 6153 -1 489 157 172 8 chrY 4148495 4148629 -47364955 + MER53 DNA DNA 1 156 -33 2483 87 55 11 chrY 4148642 4149056 -47364528 + L1PA7 LINE L1 5752 6154 0 1174 267 8 3 chrY 4149060 4149416 -47364168 + L1PA15 LINE L1 2832 3189 -3660 * 3880 209 15 25 chrY 4149409 4149786 -47363798 + L1PA15 LINE L1 5931 6310 -558 2212 89 14 0 chrY 4149786 4150066 -47363518 + AluY SINE Alu 1 284 -27 3880 209 15 25 chrY 4150066 4150636 -47362948 + L1PA15 LINE L1 6310 6868 0 994 283 101 42 chrY 4150627 4150979 -47362605 + L1M4c LINE L1 820 1150 -5234 * 1273 272 3 3 chrY 4150979 4151280 -47362304 + AluJo SINE Alu 1 301 -11 994 283 101 42 chrY 4151280 4151893 -47361691 + L1M4c LINE L1 1150 1842 -4542 360 260 65 53 chrY 4151910 4152079 -47361505 + L1M4c LINE L1 1965 2135 -4249 4394 132 53 12 chrY 4152112 4152918 -47360666 - L1PA8 LINE L1 -1 6171 5333 2965 88 13 119 chrY 4152918 4153176 -47360408 + HUERS-P1 LTR ERV1 3649 3933 -2330 2028 160 7 0 chrY 4153176 4153482 -47360102 + AluSx SINE Alu 1 308 -4 2965 88 13 119 chrY 4153482 4153516 -47360068 + HUERS-P1 LTR ERV1 3933 3969 -2294 1866 174 3 0 chrY 4153516 4153815 -47359769 + AluSg SINE Alu 6 305 -5 2965 88 13 119 chrY 4153815 4154088 -47359496 + HUERS-P1 LTR ERV1 3969 4148 -2115 2120 137 0 0 chrY 4154088 4154381 -47359203 + AluSg SINE Alu 1 293 -17 2965 88 13 119 chrY 4154381 4154427 -47359157 + HUERS-P1 LTR ERV1 4148 4197 -2066 771 239 0 0 chrY 4154430 4154585 -47358999 + AluJb SINE Alu 140 294 -18 250 261 45 3 chrY 4154598 4154722 -47358862 - MLT1E LTR MaLR -216 410 277 442 244 114 0 chrY 4154737 4154860 -47358724 - MLT1E LTR MaLR -434 159 23 1598 146 4 0 chrY 4155415 4155661 -47357923 + HERVS71 LTR ERV1 2692 2938 -6040 * 20755 183 17 4 chrY 4155658 4155684 -47357900 + HERVS71 LTR ERV1 5174 5198 -3780 3378 87 29 16 chrY 4155684 4156168 -47357416 + LTR2B LTR ERV1 1 490 0 20755 183 17 4 chrY 4156168 4159829 -47353755 + HERVS71 LTR ERV1 5198 8909 -69 2046 115 37 21 chrY 4159829 4160175 -47353409 + LTR6A LTR ERV1 1 316 -248 4397 65 7 0 chrY 4160175 4160791 -47352793 - L1P LINE L1 -1324 4822 4203 1148 203 0 5 chrY 4161144 4161341 -47352243 + AluJo SINE Alu 3 198 -114 432 175 0 12 chrY 4162082 4162162 -47351422 - AluS SINE Alu -226 87 9 1430 174 48 45 chrY 4162174 4162363 -47351221 - AluJo SINE Alu 0 312 120 2186 142 0 0 chrY 4162363 4162673 -47350911 - AluSx SINE Alu -2 310 1 1430 174 48 45 chrY 4162673 4162794 -47350790 - AluJo SINE Alu -192 120 1 1475 222 109 36 chrY 4162842 4163311 -47350273 - MLT2B1 LTR ERVL -15 505 3 562 198 9 0 chrY 4163313 4163429 -47350155 + MLT1D LTR MaLR 389 505 0 271 158 13 13 chrY 4163766 4163842 -47349742 - MER96B DNA MER1_type? -246 171 96 2220 94 3 26 chrY 4164032 4164341 -47349243 + AluSp SINE Alu 1 302 -11 1391 128 15 5 chrY 4164358 4164561 -47349023 + AluSx SINE Alu 6 210 -102 322 120 0 0 chrY 4164561 4164611 -47348973 + LTR22 LTR ERVK 1 50 -530 2555 182 19 39 chrY 4164611 4165199 -47348385 + LTR22 LTR ERVK 5 580 0 705 150 17 0 chrY 4165216 4165336 -47348248 + AluSx SINE Alu 187 308 -2 2388 83 0 0 chrY 4165433 4165723 -47347861 - AluY SINE Alu -13 298 9 304 145 16 0 chrY 4166067 4166129 -47347455 - MER96B DNA MER1_type? -306 111 49 2689 92 102 0 chrY 4166196 4166599 -47346985 - MLT2A1 LTR ERVL 0 444 1 3804 75 60 0 chrY 4166599 4167147 -47346437 - HERVL-A1 LTR ERVL 0 5654 5074 1404 150 0 61 chrY 4167147 4167306 -47346278 - AluSx SINE Alu -20 292 152 2108 138 0 3 chrY 4167306 4167604 -47345980 - AluSq SINE Alu -16 297 1 1404 150 0 61 chrY 4167604 4167690 -47345894 - AluSx SINE Alu -160 152 62 16645 94 5 2 chrY 4167690 4170018 -47343566 - HERVL LTR ERVL -566 5088 2754 768 129 26 13 chrY 4170018 4170173 -47343411 + CT-rich Low_complexity Low_complexity 3 159 0 2217 104 0 0 chrY 4170175 4170482 -47343102 - AluY SINE Alu -4 307 1 1881 176 30 30 chrY 4170501 4170864 -47342720 + THE1B LTR MaLR 2 364 0 322 271 0 62 chrY 4170912 4171008 -47342576 - L1MC4 LINE L1 -1339 6703 6614 220 138 0 52 chrY 4171008 4171066 -47342518 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 446 232 32 32 chrY 4171086 4171211 -47342373 - FRAM SINE Alu -46 130 6 284 268 31 10 chrY 4171216 4171313 -47342271 - L1M4 LINE L1 -874 5272 5174 1339 145 21 21 chrY 4171347 4171589 -47341995 - AluSg SINE Alu -10 300 59 702 200 72 90 chrY 4171617 4171670 -47341914 - L1M4 LINE L1 -1014 5132 5080 1407 161 26 71 chrY 4171670 4171980 -47341604 + AluSq SINE Alu 1 296 -17 702 200 72 90 chrY 4171980 4172216 -47341368 - L1M4 LINE L1 -1066 5080 4848 715 221 221 5 chrY 4172220 4172428 -47341156 + AluJb SINE Alu 5 257 -55 1719 145 39 0 chrY 4172448 4172730 -47340854 - AluSx SINE Alu -19 293 1 1901 138 0 0 chrY 4172776 4173073 -47340511 + AluSx SINE Alu 15 311 -1 2029 127 3 0 chrY 4177137 4177444 -47336140 + AluSx SINE Alu 1 308 -4 264 265 118 0 chrY 4177571 4177673 -47335911 - L2 LINE L2 -5 3308 3195 216 330 110 9 chrY 4178152 4178261 -47335323 + MIR3 SINE MIR 66 185 -23 183 186 0 0 chrY 4178380 4178423 -47335161 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 384 216 191 56 chrY 4178492 4178654 -47334930 - MER3 DNA MER1_type -17 192 9 1105 236 109 11 chrY 4178704 4178979 -47334605 + AluJo SINE Alu 1 302 0 1722 167 0 13 chrY 4178998 4179303 -47334281 + AluSx SINE Alu 3 303 -9 249 312 12 4 chrY 4179546 4179633 -47333951 + MIR SINE MIR 60 144 -64 612 124 21 0 chrY 4180950 4181047 -47332537 + AluSc SINE Alu 206 304 -5 1460 175 11 11 chrY 4181047 4181350 -47332234 + AluSq SINE Alu 21 323 0 631 248 23 61 chrY 4181432 4181646 -47331938 + MER20 DNA MER1_type 1 206 -13 1699 185 36 15 chrY 4181674 4182004 -47331580 + MER1B DNA MER1_type 1 337 0 1133 178 23 56 chrY 4182992 4183296 -47330288 - AluJo SINE Alu -7 305 12 1939 112 0 48 chrY 4183459 4183771 -47329813 - AluSg SINE Alu -13 297 1 268 257 82 105 chrY 4183815 4183986 -47329598 - L1ME1 LINE L1 -17 6149 5983 2343 218 26 14 chrY 4184034 4184533 -47329051 + LTR10B LTR ERV1 1 505 0 2713 118 56 12 chrY 4185614 4186028 -47327556 - LTR3 LTR ERVK 0 432 1 303 140 80 0 chrY 4186435 4186485 -47327099 - AluSc SINE Alu -10 289 236 4185 111 64 107 chrY 4186485 4187348 -47326236 - LTR12 LTR ERV1 0 826 1 764 210 52 52 chrY 4187428 4187714 -47325870 - pTR5 LTR ERV1 -1410 1028 743 1682 133 0 0 chrY 4187714 4187955 -47325629 - AluSx SINE Alu -71 241 1 1989 114 10 23 chrY 4188097 4188405 -47325179 - AluY SINE Alu -7 304 1 1196 217 72 40 chrY 4188429 4188706 -47324878 - AluJo SINE Alu -14 288 3 2392 77 3 3 chrY 4188895 4189206 -47324378 + AluY SINE Alu 1 311 0 1838 133 65 30 chrY 4189886 4190005 -47323579 + THE1B LTR MaLR 14 127 -237 1864 161 3 0 chrY 4190005 4190304 -47323280 - AluSg SINE Alu -10 300 1 1838 133 65 30 chrY 4190304 4190523 -47323061 + THE1B LTR MaLR 127 364 0 27 0 0 0 chrY 4190798 4190825 -47322759 + AT_rich Low_complexity Low_complexity 1 27 0 1683 166 11 0 chrY 4191175 4191489 -47322095 - AluSg SINE Alu 0 317 1 1730 179 7 0 chrY 4191525 4191816 -47321768 - AluSg SINE Alu -17 293 1 1590 162 20 20 chrY 4191816 4192113 -47321471 - AluSq SINE Alu -16 297 1 3317 198 130 28 chrY 4192936 4194314 -47319270 - MER52A LTR ERV1 0 1755 1 236 222 0 37 chrY 4195050 4195104 -47318480 + AluSg/x SINE Alu 116 167 -133 3734 94 322 0 chrY 4195104 4195729 -47317855 + LTR12 LTR ERV1 1 826 0 1715 137 7 28 chrY 4195729 4196014 -47317570 + AluSp SINE Alu 31 309 -4 623 208 58 79 chrY 4196947 4197058 -47316526 - L1MB8 LINE L1 -12 6166 6054 1920 139 3 3 chrY 4197058 4197361 -47316223 - AluSx SINE Alu -9 303 1 623 208 58 79 chrY 4197361 4197489 -47316095 - L1MB8 LINE L1 -124 6054 5932 1863 147 10 3 chrY 4197489 4197788 -47315796 - AluSx SINE Alu -11 301 1 263 132 0 0 chrY 4197962 4198000 -47315584 + MIR SINE MIR 118 155 -107 453 262 60 47 chrY 4198313 4198462 -47315122 + MER20 DNA MER1_type 66 216 -3 712 177 15 23 chrY 4199307 4199437 -47314147 - FLAM_C SINE Alu -10 133 5 830 189 36 106 chrY 4199442 4199743 -47313841 - AluJb SINE Alu -14 298 19 297 188 59 71 chrY 4199757 4199772 -47313812 - L1MA10 LINE L1 -82 6252 6238 893 268 70 41 chrY 4199772 4200160 -47313424 - L1ME1 LINE L1 -82 6084 5686 410 172 0 0 chrY 4200167 4200231 -47313353 - MER5A DNA MER1_type 0 189 126 885 211 119 8 chrY 4200243 4200504 -47313080 + AluJo SINE Alu 13 302 -10 401 305 21 28 chrY 4200516 4200657 -47312927 - MER5A DNA MER1_type -49 140 1 886 235 119 16 chrY 4201514 4201833 -47311751 - L1MB7 LINE L1 0 6184 5833 1661 181 7 0 chrY 4201877 4202164 -47311420 + AluSx SINE Alu 1 289 -23 1387 244 33 17 chrY 4202862 4203223 -47310361 - MLT1D LTR MaLR -2 503 137 2605 84 109 227 chrY 4203238 4204035 -47309549 - LTR12 LTR ERV1 -11 703 1 728 184 0 22 chrY 4204035 4204171 -47309413 - MLT1D LTR MaLR -371 134 2 1577 146 4 22 chrY 4204250 4204525 -47309059 - AluSp SINE Alu -2 311 42 1657 127 23 43 chrY 4204556 4204856 -47308728 + AluY SINE Alu 1 294 -17 198 0 0 0 chrY 4204930 4204952 -47308632 + (ATTG)n Simple_repeat Simple_repeat 3 24 0 576 154 0 86 chrY 4204969 4205086 -47308498 - FLAM_C SINE Alu -33 110 4 256 202 124 22 chrY 4205543 4205632 -47307952 - MLT1I LTR MaLR 0 409 312 1770 141 7 0 chrY 4205828 4206133 -47307451 + AluSq SINE Alu 1 307 0 1635 157 11 0 chrY 4206468 4206748 -47306836 + AluSx SINE Alu 6 288 -24 183 337 23 23 chrY 4207300 4207386 -47306198 - L2 LINE L2 -1526 1788 1703 670 248 7 7 chrY 4207425 4207570 -47306014 + FRAM SINE Alu 2 146 -30 815 232 11 11 chrY 4208004 4208181 -47305403 + MER8 DNA MER2_type 1 177 -62 250 178 22 0 chrY 4208367 4208412 -47305172 + MER3 DNA MER1_type 7 52 -157 212 373 32 0 chrY 4208476 4208602 -47304982 + (CACGC)n Simple_repeat Simple_repeat 4 133 0 1982 221 54 4 chrY 4208995 4209479 -47304105 - L1MB2 LINE L1 0 6171 5664 223 231 17 26 chrY 4209507 4209624 -47303960 + CT-rich Low_complexity Low_complexity 2 117 0 233 293 0 13 chrY 4209632 4209707 -47303877 + T-rich Low_complexity Low_complexity 3 76 0 402 217 18 44 chrY 4209708 4209998 -47303586 + CT-rich Low_complexity Low_complexity 1 282 0 845 238 24 24 chrY 4209998 4210250 -47303334 - AluJo SINE Alu -14 298 47 1444 136 15 133 chrY 4210912 4211051 -47302533 - MER4A LTR ERV1 0 664 585 1949 138 3 0 chrY 4211051 4211347 -47302237 - AluSx SINE Alu -15 297 1 1444 136 15 133 chrY 4211347 4211539 -47302045 - MER4A LTR ERV1 -79 585 372 462 135 112 0 chrY 4211591 4211680 -47301904 - MER4A LTR ERV1 -565 99 1 3194 136 83 14 chrY 4211681 4212270 -47301314 - MER4A-int LTR ERV1 0 6598 5969 1832 118 13 30 chrY 4212975 4213280 -47300304 + AluY SINE Alu 1 300 -11 285 62 0 62 chrY 4215337 4215385 -47298199 - L1PA5 LINE L1 -3 6151 6107 * 30772 71 8 1 chrY 4215383 4219387 -47294197 - L1P LINE L1 -2105 4041 11 1320 194 7 7 chrY 4220359 4220632 -47292952 - BaEV-int LTR ERV1 -4878 1771 1499 * 2429 233 19 2 chrY 4220626 4221145 -47292439 + BaEV-int LTR ERV1 2629 3156 -3740 4417 272 36 45 chrY 4221316 4222987 -47290597 + BaEV-int LTR ERV1 4991 6646 -3 3571 203 23 67 chrY 4222988 4224002 -47289582 - LTR5 LTR ERVK 0 969 1 10341 177 5 8 chrY 4224007 4225775 -47287809 - HERVK LTR ERVK -5 7238 5533 273 319 39 39 chrY 4225743 4225925 -47287659 - HERVK LTR ERVK -735 5181 5000 * 11552 108 4 2 chrY 4226019 4227630 -47285954 - HERVK LTR ERVK -1720 5523 3911 11508 198 15 24 chrY 4227622 4229932 -47283652 - HERVK LTR ERVK -4424 2819 531 * 1233 155 50 17 chrY 4229932 4230215 -47283369 + LTR10A LTR ERV1 290 609 0 675 291 0 0 chrY 4230228 4230403 -47283181 + BaEV-int LTR ERV1 7388 7562 -223 370 179 0 51 chrY 4230421 4230499 -47283085 - MER4A LTR ERV1 -203 461 388 1947 129 56 0 chrY 4230656 4230943 -47282641 - AluSx SINE Alu -9 303 1 207 0 0 0 chrY 4231422 4231445 -47282139 + (TC)n Simple_repeat Simple_repeat 2 24 0 2021 134 17 0 chrY 4231983 4232273 -47281311 - AluSq SINE Alu -18 295 1 365 111 0 0 chrY 4232284 4232338 -47281246 - AluSp/q SINE Alu -6 297 244 1547 227 20 6 chrY 4232473 4232825 -47280759 - MLT1B LTR MaLR -16 374 18 1188 170 65 0 chrY 4232839 4233069 -47280515 + L1MB7 LINE L1 5931 6175 -9 248 203 78 0 chrY 4234422 4234486 -47279098 - L1MB8 LINE L1 -13 6165 6097 432 227 10 0 chrY 4234704 4234801 -47278783 - L1MB1 LINE L1 -159 6009 5912 196 119 48 24 chrY 4234803 4234845 -47278739 + MIR SINE MIR 184 226 -36 203 0 0 36 chrY 4234872 4234900 -47278684 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1814 165 0 0 chrY 4234901 4235180 -47278404 - AluSx SINE Alu -33 279 1 315 179 0 0 chrY 4236152 4236219 -47277365 + GA-rich Low_complexity Low_complexity 1 67 0 1694 182 0 0 chrY 4236221 4236496 -47277088 - AluSx SINE Alu -36 276 2 240 220 18 101 chrY 4236500 4236609 -47276975 - MER69 DNA AcHobo -264 2262 2163 242 229 0 0 chrY 4236932 4236980 -47276604 - MER69 DNA AcHobo -841 385 338 328 175 0 16 chrY 4238608 4238671 -47274913 + MER20 DNA MER1_type 112 173 -46 860 138 0 0 chrY 4238844 4238960 -47274624 - AluSp SINE Alu -197 116 1 375 41 0 0 chrY 4240491 4240540 -47273044 + (TG)n Simple_repeat Simple_repeat 1 49 0 1701 168 7 11 chrY 4240542 4240822 -47272762 - AluSx SINE Alu -33 279 1 480 235 0 20 chrY 4242008 4242110 -47271474 - MER20 DNA MER1_type -114 105 6 2043 121 4 0 chrY 4243507 4243818 -47269766 - AluSg SINE Alu 0 314 3 975 201 66 8 chrY 4244221 4244275 -47269309 - MSTA LTR MaLR -173 253 204 1828 153 39 0 chrY 4244275 4244556 -47269028 - AluSx SINE Alu -20 292 1 975 201 66 8 chrY 4244556 4244740 -47268844 - MSTA LTR MaLR -222 204 3 832 208 104 6 chrY 4245427 4245610 -47267974 - MER3 DNA MER1_type -1 208 8 239 281 144 50 chrY 4245749 4245888 -47267696 + HAL1 LINE L1 1383 1534 -973 618 290 79 105 chrY 4246040 4246761 -47266823 + HAL1 LINE L1 1618 2313 -194 1248 207 32 25 chrY 4246761 4247062 -47266522 + AluJo SINE Alu 1 303 0 618 290 79 105 chrY 4247062 4247252 -47266332 + HAL1 LINE L1 2313 2506 -1 1941 123 3 72 chrY 4247318 4247650 -47265934 + MER1B DNA MER1_type 31 339 0 517 226 19 0 chrY 4247708 4247814 -47265770 - MER20 DNA MER1_type -111 108 1 201 261 108 0 chrY 4248330 4248395 -47265189 - MIR3 SINE MIR -28 180 109 641 210 0 0 chrY 4249479 4249603 -47263981 + FLAM_C SINE Alu 2 125 -8 743 238 53 5 chrY 4249915 4250121 -47263463 + MER20 DNA MER1_type 1 216 -3 190 254 111 0 chrY 4250200 4250263 -47263321 + L2 LINE L2 2267 2336 -978 1512 197 14 24 chrY 4250830 4251125 -47262459 + AluJo SINE Alu 1 292 -20 1762 165 62 9 chrY 4251408 4251730 -47261854 - MER47A DNA MER2_type -27 339 1 966 259 139 32 chrY 4251734 4251883 -47261701 - L1MD2 LINE L1 -227 6132 6000 1846 156 6 29 chrY 4251883 4252198 -47261386 - AluSq SINE Alu -5 308 1 966 259 139 32 chrY 4252198 4252422 -47261162 - L1MD2 LINE L1 -359 6000 5719 1922 149 0 17 chrY 4252969 4253299 -47260285 + AluJb SINE Alu 5 312 0 414 209 70 31 chrY 4253469 4253563 -47260021 + MER3 DNA MER1_type 76 178 -31 1722 104 108 4 chrY 4253563 4253814 -47259770 + AluY SINE Alu 21 297 -14 414 209 70 31 chrY 4253814 4253848 -47259736 + MER3 DNA MER1_type 178 209 0 550 217 133 59 chrY 4253991 4254194 -47259390 + MER20 DNA MER1_type 2 219 0 666 214 0 0 chrY 4254746 4254863 -47258721 - FRAM SINE Alu -14 162 46 2514 78 3 0 chrY 4255136 4255445 -47258139 - AluY SINE Alu -1 310 1 837 234 155 71 chrY 4256008 4256362 -47257222 + MLT1B LTR MaLR 1 384 -6 1698 193 24 26 chrY 4256784 4257162 -47256422 - MLT1C LTR MaLR -90 377 1 639 0 0 0 chrY 4257778 4257849 -47255735 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chrY 4257958 4257981 -47255603 + AT_rich Low_complexity Low_complexity 1 23 0 1956 114 30 3 chrY 4257982 4258280 -47255304 - L1PA10 LINE L1 -6 6162 5857 872 228 185 26 chrY 4259490 4259880 -47253704 - MLT1C LTR MaLR -15 452 1 1188 118 0 12 chrY 4260173 4260343 -47253241 - AluSq SINE Alu -14 299 132 189 0 0 0 chrY 4260366 4260387 -47253197 + (T)n Simple_repeat Simple_repeat 1 21 0 2269 99 3 17 chrY 4261012 4261314 -47252270 + AluSp SINE Alu 2 299 -14 1798 173 0 7 chrY 4261722 4262017 -47251567 + AluSx SINE Alu 1 293 -19 918 177 72 29 chrY 4262417 4262626 -47250958 - MLT1F1 LTR MaLR 0 567 350 874 214 85 10 chrY 4262992 4263193 -47250391 + AluJo SINE Alu 85 300 -12 189 175 0 0 chrY 4264219 4264259 -47249325 + T-rich Low_complexity Low_complexity 5 44 0 299 170 0 19 chrY 4264317 4264370 -47249214 + CT-rich Low_complexity Low_complexity 3 54 0 311 119 0 34 chrY 4264372 4264431 -47249153 + (TCCCC)n Simple_repeat Simple_repeat 3 59 0 1919 161 0 0 chrY 4265197 4265488 -47248096 - AluSx SINE Alu -21 291 1 2409 93 0 0 chrY 4265926 4266227 -47247357 + AluY SINE Alu 1 301 -10 381 283 141 23 chrY 4266771 4267153 -47246431 - L2 LINE L2 -89 3224 2792 515 251 103 56 chrY 4267159 4267552 -47246032 - LTR15 LTR ERV1 -4 530 149 201 306 89 8 chrY 4268003 4268127 -47245457 - L2 LINE L2 -939 2375 2242 1299 218 150 8 chrY 4269013 4269394 -47244190 - L1MB4 LINE L1 -176 6004 5570 591 309 65 0 chrY 4269474 4269675 -47243909 + MER58B DNA MER1_type 15 228 -113 1434 230 3 3 chrY 4269740 4270031 -47243553 + AluJb SINE Alu 6 296 -16 23 33 0 0 chrY 4270495 4270525 -47243059 + AT_rich Low_complexity Low_complexity 1 30 0 4496 45 2 2 chrY 4270896 4271454 -47242130 + L1P LINE L1 4839 5396 -750 232 176 0 20 chrY 4272016 4272055 -47241529 + (TG)n Simple_repeat Simple_repeat 2 41 -10 1661 183 7 3 chrY 4272055 4272340 -47241244 - AluJb SINE Alu -26 286 1 232 176 0 20 chrY 4272340 4272351 -47241233 + (TG)n Simple_repeat Simple_repeat 41 51 0 211 323 31 21 chrY 4272530 4272626 -47240958 - MIR SINE MIR -143 119 23 2097 122 17 3 chrY 4274342 4274638 -47238946 + AluSp SINE Alu 1 300 -13 190 300 169 50 chrY 4274988 4275148 -47238436 + MIR SINE MIR 34 212 -50 1870 143 27 7 chrY 4275242 4275543 -47238041 + AluSq SINE Alu 1 307 -6 813 255 28 5 chrY 4275725 4275937 -47237647 - MER20 DNA MER1_type 0 219 3 388 237 86 0 chrY 4276381 4276474 -47237110 + MER58A DNA MER1_type 1 101 -6 2267 168 66 16 chrY 4276525 4276966 -47236618 + MSTA-int LTR MaLR 181 643 -1008 2057 226 20 29 chrY 4277241 4277697 -47235887 + MSTA-int LTR MaLR 650 1101 -550 1162 244 36 32 chrY 4277697 4278188 -47235396 + LTR10B LTR ERV1 1 547 0 2351 162 134 19 chrY 4278188 4278658 -47234926 + MSTA-int LTR MaLR 1097 1620 -31 2056 148 65 35 chrY 4278677 4279076 -47234508 + MSTA LTR MaLR 1 411 -17 22 0 0 0 chrY 4280078 4280100 -47233484 + AT_rich Low_complexity Low_complexity 1 22 0 665 214 0 0 chrY 4280187 4280304 -47233280 - FLAM_C SINE Alu -16 117 1 351 228 128 20 chrY 4280634 4280783 -47232801 - MLT1F LTR MaLR -109 433 269 457 158 13 0 chrY 4280856 4280932 -47232652 - MER20 DNA MER1_type -113 106 30 329 278 35 0 chrY 4281515 4281630 -47231954 + L1M4 LINE L1 5714 5832 -342 1053 139 6 0 chrY 4281630 4281788 -47231796 + AluY SINE Alu 1 159 -152 367 113 14 99 chrY 4281793 4281864 -47231720 + FLAM SINE Alu 66 117 -16 186 298 0 0 chrY 4282889 4282936 -47230648 - L2 LINE L2 -1 3271 3225 315 278 60 60 chrY 4283101 4283252 -47230332 - MLT1J LTR MaLR -38 473 323 180 300 57 29 chrY 4284563 4284633 -47228951 - L3 LINE CR1 -1495 82 11 2011 149 13 0 chrY 4284890 4285198 -47228386 + AluSx SINE Alu 1 312 0 42 36 0 0 chrY 4285694 4285750 -47227834 + AT_rich Low_complexity Low_complexity 1 56 0 1064 188 87 37 chrY 4287133 4287431 -47226153 - L1MB8 LINE L1 -281 5897 5585 544 250 100 0 chrY 4288108 4288268 -47225316 - MER58B DNA MER1_type -3 338 163 6756 94 18 88 chrY 4288325 4289367 -47224217 - L1PA8 LINE L1 0 6172 5141 1242 214 122 67 chrY 4289981 4290415 -47223169 - MLT1C LTR MaLR 0 467 10 1487 179 77 4 chrY 4291517 4291790 -47221794 - AluJb SINE Alu -19 293 1 2154 112 3 0 chrY 4291990 4292294 -47221290 + AluY SINE Alu 1 305 -6 463 149 0 0 chrY 4292294 4292368 -47221216 + AluS SINE Alu 232 305 -5 1491 229 7 0 chrY 4293860 4294161 -47219423 - AluJo SINE Alu -9 303 1 1436 283 14 13 chrY 4294239 4294728 -47218856 - L1ME1 LINE L1 -104 6062 5569 490 92 27 71 chrY 4295295 4295479 -47218105 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 352 126 34 86 chrY 4295497 4295672 -47217912 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 1756 219 12 17 chrY 4296252 4296663 -47216921 + L1MB3 LINE L1 5733 6141 -42 1119 215 16 12 chrY 4296663 4296914 -47216670 + AluJo SINE Alu 42 293 -19 762 290 6 72 chrY 4297197 4297384 -47216200 + L1MD1 LINE L1 5704 5863 -379 17585 97 23 0 chrY 4297384 4300546 -47213038 + L1PA7 LINE L1 2952 6153 -1 762 290 6 72 chrY 4300546 4300679 -47212905 + L1MD1 LINE L1 5863 6003 -239 627 251 121 20 chrY 4301127 4301326 -47212258 - MER20 DNA MER1_type 0 219 1 893 150 30 129 chrY 4301793 4302026 -47211558 + MER2 DNA MER2_type 1 210 -135 640 270 7 0 chrY 4302175 4302323 -47211261 - MER58A DNA MER1_type 0 158 10 788 199 31 6 chrY 4303079 4303240 -47210344 + MER20 DNA MER1_type 55 219 0 1519 238 58 0 chrY 4303852 4304197 -47209387 - MLT1A1 LTR MaLR 0 365 1 246 348 0 0 chrY 4304218 4304287 -47209297 - MIR3 SINE MIR -16 192 124 211 307 114 2 chrY 4304386 4304528 -47209056 - MIR SINE MIR -58 150 3 2102 157 0 0 chrY 4306975 4307281 -47206303 - AluSx SINE Alu -6 306 1 1398 197 7 21 chrY 4307828 4308107 -47205477 + AluJb SINE Alu 1 275 -37 414 0 0 0 chrY 4308116 4308162 -47205422 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chrY 4308791 4308814 -47204770 + AT_rich Low_complexity Low_complexity 1 23 0 830 203 14 0 chrY 4308815 4308963 -47204621 - AluJb SINE Alu -24 288 139 1506 218 0 0 chrY 4309254 4309534 -47204050 - AluJb SINE Alu -32 280 1 2561 109 56 6 chrY 4309717 4310076 -47203508 - MER51B LTR ERV1 0 377 1 7854 162 66 54 chrY 4310076 4311725 -47201859 - LTR10C-int LTR ERV1 0 7816 5837 312 29 0 0 chrY 4311725 4311759 -47201825 - L1PA3 LINE L1 -19 6136 6103 7854 162 66 54 chrY 4311759 4312333 -47201251 - LTR10C-int LTR ERV1 -1979 5837 5272 2396 73 3 3 chrY 4312344 4312647 -47200937 - AluY SINE Alu -8 303 1 2091 152 136 58 chrY 4312692 4313472 -47200112 - LTR10C-int LTR ERV1 -2043 5375 4657 7095 67 35 3 chrY 4313472 4314525 -47199059 - L1PA6 LINE L1 -2 6152 5078 2091 152 136 58 chrY 4314525 4314611 -47198973 - LTR10C-int LTR ERV1 -2761 4657 3504 * 3682 128 86 61 chrY 4314609 4314803 -47198781 - LTR10C-int LTR ERV1 -4501 3315 3127 2205 110 13 7 chrY 4314803 4315113 -47198471 + AluSx SINE Alu 1 312 0 3682 128 86 61 chrY 4315113 4315717 -47197867 - LTR10C-int LTR ERV1 -4689 3127 2497 2766 118 22 49 chrY 4315715 4315808 -47197776 - LTR10C-int LTR ERV1 -5491 2325 2231 * 2092 131 0 3 chrY 4315808 4316099 -47197485 + AluSq SINE Alu 1 290 -23 2766 118 22 49 chrY 4316099 4316558 -47197026 - LTR10C-int LTR ERV1 -5585 2231 1788 492 165 0 128 chrY 4316558 4316691 -47196893 - MER4A LTR ERV1 -147 517 402 7876 153 47 23 chrY 4316695 4316999 -47196585 - LTR10C-int LTR ERV1 -6354 1462 1167 5013 61 0 2 chrY 4316999 4317591 -47195993 - LTR10C LTR ERV1 0 591 1 7876 153 47 23 chrY 4317591 4318714 -47194870 - LTR10C-int LTR ERV1 -6649 1167 1 2002 135 70 11 chrY 4318714 4318796 -47194788 - MER51B LTR ERV1 0 377 301 6285 80 10 18 chrY 4318796 4319582 -47194002 + LTR17 LTR ERV1 1 780 0 2002 135 70 11 chrY 4319582 4319855 -47193729 - MER51B LTR ERV1 -76 301 1 722 279 0 0 chrY 4320058 4320212 -47193372 + FRAM SINE Alu 1 154 -12 1053 228 19 0 chrY 4320974 4321189 -47192395 - MER20 DNA MER1_type 0 219 1 1702 176 87 113 chrY 4321370 4321920 -47191664 - LTR10A LTR ERV1 -61 548 13 12814 172 31 44 chrY 4321932 4326198 -47187386 - Harlequin LTR ERV1 -4 6645 719 4398 225 38 27 chrY 4326249 4327444 -47186140 - HERVI LTR ERV1 -5812 837 499 724 250 52 49 chrY 4327491 4327779 -47185805 - HERVI LTR ERV1 -6360 289 1 1903 169 88 81 chrY 4327788 4328332 -47185252 - LTR10A LTR ERV1 -61 548 1 2084 151 8 48 chrY 4329697 4330075 -47183509 + THE1B LTR MaLR 2 364 0 326 164 9 146 chrY 4330451 4330561 -47183023 + THE1A LTR MaLR 2 96 -259 * 1193 118 0 0 chrY 4330545 4330706 -47182878 - THE1B LTR MaLR -38 326 166 1805 129 11 4 chrY 4330931 4331254 -47182330 - AluSx SINE Alu 0 325 1 1309 223 3 0 chrY 4331277 4331564 -47182020 + AluJo SINE Alu 1 288 -24 1216 204 35 14 chrY 4331776 4332060 -47181524 + AluJo SINE Alu 4 293 -19 21 0 0 0 chrY 4332493 4332514 -47181070 + AT_rich Low_complexity Low_complexity 1 21 0 2218 101 0 10 chrY 4332608 4332943 -47180641 + AluSp SINE Alu 1 313 0 448 250 65 0 chrY 4333814 4333922 -47179662 - MER58A DNA MER1_type -2 222 108 1129 186 45 5 chrY 4333931 4334151 -47179433 - MLT1B LTR MaLR -12 378 150 238 281 16 31 chrY 4334176 4334240 -47179344 - MER58A DNA MER1_type -42 65 3 1358 234 7 7 chrY 4334276 4334562 -47179022 - AluJo SINE Alu -16 286 1 1593 172 11 7 chrY 4336509 4336788 -47176796 - AluSq SINE Alu -33 280 1 1088 233 5 9 chrY 4337771 4337986 -47175598 + MER58A DNA MER1_type 11 224 0 288 53 0 0 chrY 4338028 4338066 -47175518 + (TC)n Simple_repeat Simple_repeat 1 38 0 762 226 80 21 chrY 4338756 4339044 -47174540 + MER33 DNA MER1_type 20 324 0 402 214 0 0 chrY 4339258 4339328 -47174256 + AluJ/FLAM SINE Alu 2 71 -241 433 121 0 0 chrY 4339357 4339415 -47174169 + FLAM SINE Alu 69 126 -17 192 125 0 0 chrY 4339417 4339449 -47174135 + (GGATG)n Simple_repeat Simple_repeat 3 34 0 269 245 0 0 chrY 4339457 4339506 -47174078 + AluSg/x SINE Alu 135 183 -119 263 146 208 31 chrY 4340144 4340240 -47173344 - L1MB5 LINE L1 -112 6062 5950 1956 140 0 0 chrY 4340517 4340817 -47172767 - AluSx SINE Alu -12 300 1 469 302 172 26 chrY 4341168 4341212 -47172372 + L1MD2 LINE L1 5911 5947 -412 1875 147 13 0 chrY 4341212 4341519 -47172065 + AluSq SINE Alu 1 311 -2 469 302 172 26 chrY 4341519 4341852 -47171732 + L1MD2 LINE L1 5947 6343 -16 1347 201 10 30 chrY 4342476 4342779 -47170805 + AluJo SINE Alu 1 297 -15 543 285 7 0 chrY 4342780 4342924 -47170660 - MER82 DNA MER2_type -484 169 25 1754 128 10 20 chrY 4344648 4344945 -47168639 - AluSc SINE Alu 0 309 16 1011 154 44 118 chrY 4344945 4345217 -47168367 + AluJo SINE Alu 44 295 -17 1108 185 142 50 chrY 4345787 4346047 -47167537 + AluJo SINE Alu 1 284 -18 1852 181 127 0 chrY 4346118 4346489 -47167095 - MSTA LTR MaLR 0 428 11 609 261 94 47 chrY 4346509 4346911 -47166673 + L1M4c LINE L1 1116 1536 -4848 244 245 14 150 chrY 4348655 4348802 -47164782 + MER94 DNA DNA 6 132 -2 1927 92 0 51 chrY 4348877 4349189 -47164395 - AluSc SINE Alu 0 298 2 614 200 87 0 chrY 4349634 4349749 -47163835 + FLAM_C SINE Alu 1 125 -8 501 32 0 0 chrY 4349750 4349813 -47163771 + (CA)n Simple_repeat Simple_repeat 2 64 0 1259 176 69 35 chrY 4349817 4350107 -47163477 + AluJo SINE Alu 2 301 -1 1838 140 10 3 chrY 4351176 4351469 -47162115 + AluSq SINE Alu 3 297 -16 367 73 73 30 chrY 4351502 4351666 -47161918 + (TA)n Simple_repeat Simple_repeat 2 172 0 248 121 77 0 chrY 4351695 4351786 -47161798 + (TA)n Simple_repeat Simple_repeat 1 98 0 319 172 0 0 chrY 4351789 4351852 -47161732 - AluJb SINE Alu -185 117 71 712 179 8 8 chrY 4353587 4353710 -47159874 - FLAM_C SINE Alu -19 124 2 428 222 68 8 chrY 4353949 4354066 -47159518 - LTR16B LTR ERVL -26 438 315 1668 158 4 0 chrY 4354097 4354363 -47159221 + AluSx SINE Alu 1 267 -45 672 228 19 13 chrY 4355025 4355101 -47158483 + MER20 DNA MER1_type 3 77 -142 1681 211 18 0 chrY 4355101 4355442 -47158142 - MER7A DNA MER2_type -1 345 1 672 228 19 13 chrY 4355442 4355523 -47158061 + MER20 DNA MER1_type 77 161 -58 395 237 0 0 chrY 4355923 4355999 -47157585 - MER58A DNA MER1_type -30 77 2 1919 128 7 3 chrY 4356274 4356572 -47157012 - AluSq SINE Alu -14 299 1 206 174 22 0 chrY 4357205 4357251 -47156333 + CT-rich Low_complexity Low_complexity 3 49 0 1518 118 10 90 chrY 4360435 4360723 -47152861 - MER4A LTR ERV1 0 664 400 790 227 43 34 chrY 4361086 4361293 -47152291 + AluJo SINE Alu 87 295 -17 598 262 141 48 chrY 4361910 4362387 -47151197 - LTR67 LTR ERVL -8 549 29 6431 139 65 44 chrY 4362810 4364083 -47149501 + HSMAR2 DNA Mariner 1 1300 -2 1653 194 0 0 chrY 4364213 4364507 -47149077 + AluSx SINE Alu 1 294 -18 1107 183 57 57 chrY 4364667 4364930 -47148654 + Tigger3(Golem) DNA MER2_type 2761 3023 -6 749 278 134 30 chrY 4366676 4367173 -47146411 + L2 LINE L2 2752 3296 -17 1159 249 14 7 chrY 4367483 4367760 -47145824 + AluJo SINE Alu 12 290 -22 2276 79 0 3 chrY 4368152 4368455 -47145129 + AluY SINE Alu 1 302 -9 401 171 14 130 chrY 4368646 4368792 -47144792 - L1ME4a LINE L1 -2 6119 5991 1363 192 30 3 chrY 4368958 4369255 -47144329 - AluSx SINE Alu -5 307 3 1535 204 0 19 chrY 4369288 4369597 -47143987 + AluJo SINE Alu 1 303 -9 3326 199 45 10 chrY 4369697 4370384 -47143200 + MER50 LTR ERV1 1 711 -23 1676 187 171 31 chrY 4371687 4372168 -47141416 - LTR10A LTR ERV1 -61 548 1 7494 196 16 21 chrY 4372263 4374670 -47138914 + LTR10A-int LTR ERV1 2552 6647 -2 1951 191 104 48 chrY 4374671 4375190 -47138394 + LTR10A LTR ERV1 1 548 -61 1143 204 18 26 chrY 4375208 4375434 -47138150 - MER58A DNA MER1_type 0 224 1 276 250 10 48 chrY 4376011 4376115 -47137469 - MER58 DNA MER1_type -137 204 105 1182 205 193 4 chrY 4376128 4376382 -47137202 + AluJb SINE Alu 1 302 0 196 27 54 27 chrY 4376387 4376424 -47137160 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 230 268 127 0 chrY 4376426 4376497 -47137087 - MER58 DNA MER1_type -2330 90 11 2269 75 7 13 chrY 4377563 4377871 -47135713 + AluY SINE Alu 3 308 -3 1207 122 11 0 chrY 4377880 4378068 -47135516 + AluSg/x SINE Alu 121 310 0 372 22 0 0 chrY 4380137 4380182 -47133402 + (TG)n Simple_repeat Simple_repeat 2 46 0 5789 163 24 36 chrY 4380182 4380946 -47132638 - MER11C LTR ERVK -1 1070 321 2231 91 37 0 chrY 4380946 4381242 -47132342 - AluY SINE Alu -4 307 1 5789 163 24 36 chrY 4381242 4381560 -47132024 - MER11C LTR ERVK -750 321 1 189 0 0 0 chrY 4381648 4381669 -47131915 + (TG)n Simple_repeat Simple_repeat 1 21 0 695 283 99 72 chrY 4382478 4382621 -47130963 + L2 LINE L2 2507 2645 -668 1484 254 25 8 chrY 4382621 4382980 -47130604 - MLT1A1 LTR MaLR 0 365 1 695 283 99 72 chrY 4382980 4383456 -47130128 + L2 LINE L2 2645 3139 -174 921 182 6 12 chrY 4383815 4383980 -47129604 + AluSg/x SINE Alu 135 298 -12 1794 161 22 0 chrY 4384803 4385070 -47128514 + AluSx SINE Alu 1 273 -39 207 0 0 0 chrY 4385655 4385678 -47127906 + (A)n Simple_repeat Simple_repeat 1 23 0 259 252 163 0 chrY 4386317 4386440 -47127144 - L1ME LINE L1 -394 5768 5626 1868 148 0 33 chrY 4388777 4389080 -47124504 - AluSx SINE Alu -19 293 1 2066 151 3 0 chrY 4389088 4389399 -47124185 - AluSx SINE Alu 0 312 1 183 262 0 0 chrY 4390186 4390228 -47123356 + MIR SINE MIR 109 150 -112 553 201 63 90 chrY 4391025 4391214 -47122370 + MSTD LTR MaLR 210 393 -3 1633 151 55 24 chrY 4391553 4391844 -47121740 + AluSx SINE Alu 1 300 -12 284 251 143 54 chrY 4391938 4392364 -47121220 + L1M4 LINE L1 2598 3061 -3085 22 70 0 0 chrY 4392726 4392769 -47120815 + AT_rich Low_complexity Low_complexity 1 43 0 2078 122 3 3 chrY 4393244 4393538 -47120046 - AluSc SINE Alu -15 294 1 549 263 31 85 chrY 4393662 4393773 -47119811 - L1M4 LINE L1 -2117 4029 3913 1782 146 18 0 chrY 4393773 4394054 -47119530 - AluJb SINE Alu -19 293 8 549 263 31 85 chrY 4394054 4394235 -47119349 - L1M4 LINE L1 -2233 3913 3753 242 297 121 11 chrY 4394253 4394435 -47119149 - L1M4 LINE L1 -2468 3678 3477 * 29949 76 10 2 chrY 4394405 4399184 -47114400 - L1PA5 LINE L1 0 6154 1338 31853 59 2 3 chrY 4399187 4403162 -47110422 + L1PA3 LINE L1 1 3968 -2178 8116 37 5 0 chrY 4403162 4404885 -47108699 + L1PA3 LINE L1 4454 6180 0 1079 216 100 23 chrY 4404889 4405148 -47108436 - AluJb SINE Alu -33 279 1 1276 176 9 0 chrY 4405243 4405453 -47108131 - L1PA16 LINE L1 -9 6157 5946 207 100 0 0 chrY 4405633 4405663 -47107921 + (GA)n Simple_repeat Simple_repeat 1 30 0 1689 152 59 7 chrY 4405729 4406019 -47107565 - AluSc SINE Alu -4 305 1 2141 130 0 7 chrY 4406548 4406849 -47106735 - AluSg SINE Alu 0 310 12 198 0 0 0 chrY 4407774 4407796 -47105788 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 321 136 34 136 chrY 4407810 4407846 -47105738 + MADE1 DNA Mariner 2 40 -40 222 37 0 0 chrY 4407846 4407873 -47105711 + (TG)n Simple_repeat Simple_repeat 2 28 0 1857 143 56 0 chrY 4407874 4408140 -47105444 - AluSx SINE Alu -31 281 1 321 136 34 136 chrY 4408140 4408189 -47105395 + MADE1 DNA Mariner 39 80 0 3793 147 16 13 chrY 4408560 4409093 -47104491 + L1PA16 LINE L1 5530 6067 -99 1835 203 42 125 chrY 4409093 4409758 -47103826 + LTR9 LTR ERV1 3 612 0 3793 147 16 13 chrY 4409758 4409845 -47103739 + L1PA16 LINE L1 6067 6152 -14 1544 151 33 7 chrY 4409872 4410144 -47103440 + L1MB3 LINE L1 5895 6173 -10 768 197 0 0 chrY 4410147 4410274 -47103310 - FLAM_C SINE Alu -4 129 3 431 212 7 0 chrY 4411074 4411220 -47102364 + (TA)n Simple_repeat Simple_repeat 2 148 0 219 36 0 0 chrY 4411222 4411250 -47102334 + (GA)n Simple_repeat Simple_repeat 1 28 0 1175 162 20 10 chrY 4411250 4411454 -47102130 - AluJo SINE Alu -34 278 73 465 253 0 10 chrY 4411454 4411553 -47102031 - AluJo SINE Alu -128 184 87 1139 174 32 23 chrY 4411553 4411772 -47101812 - AluJo SINE Alu -91 221 1 2073 145 0 0 chrY 4411872 4412175 -47101409 - AluSx SINE Alu -7 305 3 1296 171 23 35 chrY 4412196 4412416 -47101168 + L1MA8 LINE L1 6018 6236 -55 2137 122 14 0 chrY 4412416 4412711 -47100873 + AluSp SINE Alu 1 299 -14 1296 171 23 35 chrY 4412711 4412747 -47100837 + L1MA8 LINE L1 6236 6271 -20 2026 138 3 0 chrY 4412763 4413046 -47100538 + AluSx SINE Alu 1 284 -28 1681 134 30 0 chrY 4413101 4413370 -47100214 - L1MA5A LINE L1 0 6297 6021 1540 161 71 29 chrY 4413740 4413991 -47099593 + MLT1A1 LTR MaLR 43 311 -54 1682 89 12 32 chrY 4413991 4414239 -47099345 + MER75B DNA T2_type 1 243 0 1540 161 71 29 chrY 4414239 4414297 -47099287 + MLT1A1 LTR MaLR 311 365 0 1770 158 3 36 chrY 4414414 4414717 -47098867 - AluSq SINE Alu -18 295 3 887 223 0 33 chrY 4414973 4415184 -47098400 + MER20 DNA MER1_type 1 204 -15 1591 159 3 76 chrY 4415429 4415602 -47097982 - AluJo SINE Alu -19 293 152 1884 172 0 3 chrY 4415602 4415893 -47097691 - AluSx SINE Alu -22 290 1 1591 159 3 76 chrY 4415893 4416034 -47097550 - AluJo SINE Alu -160 152 2 960 239 95 31 chrY 4416077 4416404 -47097180 - MLT1C LTR MaLR -8 459 112 1676 230 61 2 chrY 4416724 4417119 -47096465 + L1MB5 LINE L1 5728 6149 -25 1966 139 7 7 chrY 4417119 4417435 -47096149 + AluSx SINE Alu 3 312 0 1676 230 61 2 chrY 4417435 4417447 -47096137 + L1MB5 LINE L1 6149 6159 -15 1509 208 0 14 chrY 4417540 4417834 -47095750 + AluJo SINE Alu 1 290 -22 2104 131 7 0 chrY 4417938 4418228 -47095356 - AluSx SINE Alu -16 296 5 2070 120 7 10 chrY 4418257 4418556 -47095028 - AluY SINE Alu -13 298 1 268 77 39 0 chrY 4418652 4418704 -47094880 + (TTA)n Simple_repeat Simple_repeat 1 54 0 41593 37 25 1 chrY 4418704 4424722 -47088862 - L1PA2 LINE L1 -13 6142 1 22 0 0 0 chrY 4424854 4424876 -47088708 + AT_rich Low_complexity Low_complexity 1 22 0 1363 236 7 7 chrY 4425145 4425421 -47088163 - AluJo SINE Alu -32 280 5 748 207 64 11 chrY 4425575 4425762 -47087822 + MLT1B LTR MaLR 1 187 -187 966 183 52 0 chrY 4425764 4425955 -47087629 - L1MB1 LINE L1 -1 6167 5967 477 122 0 0 chrY 4425963 4426037 -47087547 + (TC)n Simple_repeat Simple_repeat 1 74 0 776 207 0 0 chrY 4426060 4426200 -47087384 + MLT1B LTR MaLR 193 332 -58 1773 162 184 11 chrY 4426295 4426470 -47087114 - MSTA LTR MaLR -7 421 278 180 0 0 0 chrY 4426470 4426490 -47087094 + (GA)n Simple_repeat Simple_repeat 1 20 0 1773 162 184 11 chrY 4426490 4426673 -47086911 - MSTA LTR MaLR -150 278 1 2379 215 45 8 chrY 4426994 4427497 -47086087 + L1MB1 LINE L1 5586 6111 -78 2207 112 48 0 chrY 4427497 4427828 -47085756 + L1PB1 LINE L1 5800 6146 -5 2379 215 45 8 chrY 4427828 4427854 -47085730 + L1MB1 LINE L1 6111 6135 -54 261 227 61 0 chrY 4427854 4427920 -47085664 + L1MB1 LINE L1 6092 6161 -28 22 0 0 0 chrY 4428241 4428263 -47085321 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrY 4428881 4428903 -47084681 + (T)n Simple_repeat Simple_repeat 1 22 0 560 205 8 33 chrY 4428991 4429391 -47084193 + CT-rich Low_complexity Low_complexity 1 390 0 1778 149 7 35 chrY 4429660 4429949 -47083635 + AluSx SINE Alu 1 281 -31 580 226 0 38 chrY 4429990 4430123 -47083461 + FLAM_C SINE Alu 1 128 -5 269 93 167 19 chrY 4430131 4430185 -47083399 + L1M3 LINE L1 5652 5713 -470 1474 193 10 49 chrY 4430198 4430504 -47083080 + AluJb SINE Alu 13 306 -6 849 237 56 40 chrY 4430511 4430845 -47082739 + L1MB5 LINE L1 5701 6037 -147 1394 108 0 0 chrY 4430853 4431039 -47082545 + AluSg/x SINE Alu 114 299 -13 341 202 71 12 chrY 4431101 4431185 -47082399 + L1MB3 LINE L1 6092 6180 -3 2320 141 68 34 chrY 4431705 4432144 -47081440 - MER50 LTR ERV1 -280 454 1 2224 121 3 0 chrY 4432148 4432461 -47081123 + MER41A LTR ERV1 1 314 -240 209 161 0 0 chrY 4433110 4433141 -47080443 + polypyrimidine Low_complexity Low_complexity 4 34 0 655 214 0 0 chrY 4433799 4433925 -47079659 + L1MB3 LINE L1 5804 5929 -254 670 152 14 58 chrY 4433928 4434066 -47079518 - LTR23 LTR ERV1 -1 436 305 1208 232 19 3 chrY 4434066 4434337 -47079247 - LTR10B LTR ERV1 0 591 310 248 269 0 0 chrY 4434356 4434408 -47079176 + LTR30 LTR ERV1 1 52 -670 1003 155 61 18 chrY 4434408 4434632 -47078952 + LTR12 LTR ERV1 60 1982 -456 284 145 87 14 chrY 4434670 4434739 -47078845 + LTR12 LTR ERV1 204 277 -437 291 165 63 90 chrY 4434739 4434850 -47078734 + LTR30 LTR ERV1 375 477 -92 589 141 0 0 chrY 4434855 4434940 -47078644 + LTR12 LTR ERV1 630 714 0 30341 133 13 11 chrY 4434960 4440381 -47073203 + HERV9 LTR ERV1 55 5568 -2831 6207 128 3 2 chrY 4440379 4441854 -47071730 + HERV9 LTR ERV1 6887 8399 0 * 252 208 0 19 chrY 4441854 4441907 -47071677 + LTR30 LTR ERV1 1 52 -670 677 178 22 144 chrY 4441907 4442177 -47071407 + LTR12 LTR ERV1 53 289 -425 259 222 0 42 chrY 4442177 4442249 -47071335 + LTR30 LTR ERV1 556 624 -98 662 144 14 1 chrY 4442249 4442366 -47071218 + LTR12 LTR ERV1 52 714 0 505 188 97 51 chrY 4442366 4442569 -47071015 - LTR10B LTR ERV1 -287 218 1 5256 254 43 28 chrY 4442570 4444453 -47069131 - LTR10B-int LTR ERV1 -2 6647 4795 7586 72 23 12 chrY 4444453 4445412 -47068172 + LTR5 LTR ERVK 1 969 0 5256 254 43 28 chrY 4445412 4445609 -47067975 - LTR10B-int LTR ERV1 -1854 4795 2603 1721 304 58 22 chrY 4445634 4446311 -47067273 - LTR10B-int LTR ERV1 -2545 5240 4540 623 173 0 127 chrY 4446310 4446460 -47067124 - LTR10B-int LTR ERV1 -3220 3429 3299 * 5187 256 23 23 chrY 4446459 4447845 -47065739 - LTR10B-int LTR ERV1 -3768 2761 1374 449 226 148 13 chrY 4447835 4447990 -47065594 - LTR10B-int LTR ERV1 -5869 780 605 * 979 257 92 4 chrY 4447986 4448258 -47065326 - LTR10B-int LTR ERV1 -6347 302 7 1690 208 139 29 chrY 4448260 4448741 -47064843 - LTR10B LTR ERV1 0 547 14 843 212 0 0 chrY 4448747 4448893 -47064691 - AluJb SINE Alu -59 253 108 1284 185 43 18 chrY 4448903 4449184 -47064400 - LTR56 LTR ERV1 -149 296 9 250 277 24 0 chrY 4449190 4449273 -47064311 + L1MB2 LINE L1 5928 6012 -159 1416 217 23 7 chrY 4449323 4449623 -47063961 + AluJb SINE Alu 1 305 -7 604 237 8 0 chrY 4449786 4449977 -47063607 + FLAM_C SINE Alu 2 193 0 2272 148 22 3 chrY 4450044 4450401 -47063183 + THE1B LTR MaLR 1 364 0 3680 154 22 14 chrY 4450495 4450936 -47062648 + MER41B LTR ERV1 1 450 -185 1766 186 30 19 chrY 4450936 4451307 -47062277 - THE1C LTR MaLR 0 375 1 3680 154 22 14 chrY 4451307 4451495 -47062089 + MER41B LTR ERV1 450 635 0 1410 169 31 0 chrY 4452013 4452273 -47061311 + LTR26 LTR ERV1 1 268 -335 528 286 29 29 chrY 4452326 4452443 -47061141 + L1MD2 LINE L1 6077 6193 -166 1569 173 67 50 chrY 4452443 4452801 -47060783 + THE1B LTR MaLR 1 364 0 528 286 29 29 chrY 4452801 4452956 -47060628 + L1MD2 LINE L1 6192 6349 -10 2372 243 35 34 chrY 4453215 4453866 -47059718 + MER82 DNA MER2_type 1 652 -1 234 324 39 0 chrY 4453880 4453982 -47059602 + MLT1G1 LTR MaLR 25 130 -463 239 343 118 22 chrY 4454096 4454274 -47059310 + MLT1G1 LTR MaLR 305 499 -96 276 130 0 0 chrY 4454561 4454607 -47058977 + (T)n Simple_repeat Simple_repeat 1 46 0 40318 78 10 1 chrY 4454607 4460707 -47052877 - L1PA5 LINE L1 0 6154 1 26227 277 24 32 chrY 4461550 4469009 -47044575 + HERV3 LTR ERV1 1031 8426 0 668 221 140 56 chrY 4469126 4469448 -47044136 + LTR15 LTR ERV1 127 475 -18 515 191 171 0 chrY 4469673 4469778 -47043806 + FLAM_C SINE Alu 3 125 -18 1280 239 10 16 chrY 4469790 4470104 -47043480 + AluJo SINE Alu 1 312 0 1960 149 0 4 chrY 4470205 4470481 -47043103 + AluSc SINE Alu 5 279 -30 324 48 0 0 chrY 4470481 4470523 -47043061 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 1496 187 11 22 chrY 4470970 4471248 -47042336 + AluJo SINE Alu 1 275 -37 271 328 8 23 chrY 4471280 4471408 -47042176 - L2 LINE L2 0 3313 3188 1627 191 0 3 chrY 4471420 4471702 -47041882 + AluJb SINE Alu 6 286 -26 198 0 0 0 chrY 4471705 4471727 -47041857 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 245 238 148 50 chrY 4471807 4471908 -47041676 - L2 LINE L2 -252 3061 2951 218 292 34 39 chrY 4472352 4472530 -47041054 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 * 363 237 52 12 chrY 4472405 4472578 -47041006 + (TA)n Simple_repeat Simple_repeat 1 180 0 360 278 34 17 chrY 4472534 4472710 -47040874 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 202 242 33 33 chrY 4472685 4472743 -47040841 + (CATATA)n Simple_repeat Simple_repeat 6 66 -30 * 1483 167 82 43 chrY 4472743 4472879 -47040705 + AluSx SINE Alu 1 130 -182 2966 0 0 0 chrY 4472879 4473189 -47040395 + AluYa5 SINE Alu 1 310 -1 1483 167 82 43 chrY 4473189 4473333 -47040251 + AluSx SINE Alu 130 292 -20 202 242 33 33 chrY 4473333 4473365 -47040219 + (CATATA)n Simple_repeat Simple_repeat 65 96 0 564 125 40 17 chrY 4473372 4473548 -47040036 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 439 278 5 48 chrY 4473665 4473852 -47039732 + (CA)n Simple_repeat Simple_repeat 2 180 0 208 355 13 20 chrY 4473906 4474058 -47039526 + (CA)n Simple_repeat Simple_repeat 1 151 0 335 89 0 0 chrY 4474068 4474113 -47039471 + AluSq SINE Alu 141 185 -118 305 283 30 18 chrY 4474116 4474282 -47039302 + (CATA)n Simple_repeat Simple_repeat 1 168 0 370 284 19 26 chrY 4474323 4474478 -47039106 + (CATA)n Simple_repeat Simple_repeat 4 157 0 1910 140 0 14 chrY 4474819 4475104 -47038480 + AluSg SINE Alu 1 308 0 244 0 0 0 chrY 4475104 4475131 -47038453 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 730 106 10 0 chrY 4475276 4475380 -47038204 + AluSq SINE Alu 134 238 -75 1868 169 0 3 chrY 4475671 4475972 -47037612 + AluSx SINE Alu 1 300 -12 821 172 84 47 chrY 4475972 4476019 -47037565 - L1MA8 LINE L1 -23 6268 6224 1932 135 56 0 chrY 4476019 4476307 -47037277 + AluSc SINE Alu 1 304 -5 821 172 84 47 chrY 4476307 4476463 -47037121 - L1MA8 LINE L1 -67 6224 6054 1935 163 3 16 chrY 4476651 4476957 -47036627 + AluSx SINE Alu 1 302 -10 1003 154 43 98 chrY 4477077 4477158 -47036426 + AluJo SINE Alu 46 130 -182 235 0 57 0 chrY 4477158 4477193 -47036391 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2050 143 0 0 chrY 4477200 4477486 -47036098 - AluSg SINE Alu -24 286 1 1003 154 43 98 chrY 4477486 4477630 -47035954 + AluJo SINE Alu 136 266 -46 2245 97 17 0 chrY 4477911 4478201 -47035383 - AluY SINE Alu -16 295 1 1736 201 14 47 chrY 4478241 4478652 -47034932 + L1MC2 LINE L1 5937 6335 -9 1618 158 8 71 chrY 4478652 4479006 -47034578 + L1PB2 LINE L1 5817 6148 -3 2008 147 0 7 chrY 4479166 4479458 -47034126 + AluSx SINE Alu 1 290 -22 189 107 0 0 chrY 4479489 4479517 -47034067 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1223 193 84 7 chrY 4479517 4479792 -47033792 + AluJo SINE Alu 1 296 -6 1418 129 4 43 chrY 4480130 4480362 -47033222 - AluSg/x SINE Alu -6 304 82 186 43 0 0 chrY 4480362 4480385 -47033199 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1793 170 0 7 chrY 4480425 4480731 -47032853 + AluSg SINE Alu 7 310 0 219 36 0 0 chrY 4480781 4480809 -47032775 + (CA)n Simple_repeat Simple_repeat 1 28 0 1881 156 7 17 chrY 4480815 4481104 -47032480 - AluSx SINE Alu -26 286 1 683 205 8 8 chrY 4481129 4481256 -47032328 + FLAM_C SINE Alu 1 127 -16 219 114 45 0 chrY 4481256 4481300 -47032284 + (TAA)n Simple_repeat Simple_repeat 3 48 0 566 207 51 109 chrY 4481957 4482137 -47031447 + L1MB3 LINE L1 5145 5334 -812 1694 193 3 0 chrY 4482137 4482432 -47031152 + AluSx SINE Alu 1 296 -16 1904 159 10 7 chrY 4482440 4482749 -47030835 + AluSx SINE Alu 1 310 -2 566 207 51 109 chrY 4482749 4482834 -47030750 + L1MB3 LINE L1 5341 5403 -743 * 1849 245 45 35 chrY 4482816 4483354 -47030230 + L1MA3 LINE L1 5477 6019 -286 * 3671 159 30 0 chrY 4482870 4483478 -47030106 + L1PA16 LINE L1 5521 6146 -20 748 194 62 0 chrY 4483487 4483647 -47029937 + L1MB3 LINE L1 5428 5597 -577 338 206 16 0 chrY 4483647 4483710 -47029874 + Charlie1 DNA MER1_type 2697 2760 -1 776 244 6 6 chrY 4484095 4484275 -47029309 + MER58A DNA MER1_type 45 224 0 2320 96 0 13 chrY 4484358 4484670 -47028914 + AluY SINE Alu 1 308 -3 25 0 0 0 chrY 4484670 4484695 -47028889 + AT_rich Low_complexity Low_complexity 1 25 0 2098 198 24 26 chrY 4484829 4485298 -47028286 + MER89 LTR ERV1 1 468 -91 405 214 39 0 chrY 4485307 4485461 -47028123 + (TGGA)n Simple_repeat Simple_repeat 3 162 0 337 261 35 0 chrY 4485476 4485591 -47027993 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 645 199 27 0 chrY 4485591 4485894 -47027690 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 499 196 22 17 chrY 4485914 4486093 -47027491 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 374 230 11 0 chrY 4486105 4486192 -47027392 + MER89 LTR ERV1 472 559 0 1907 142 17 0 chrY 4487066 4487355 -47026229 + AluY SINE Alu 1 294 -17 1624 189 7 23 chrY 4487622 4487924 -47025660 - AluJo SINE Alu -15 297 1 635 128 23 8 chrY 4488713 4488846 -47024738 + (TCCA)n Simple_repeat Simple_repeat 3 137 0 237 33 0 0 chrY 4488866 4488896 -47024688 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2099 130 0 0 chrY 4488899 4489184 -47024400 - AluSx SINE Alu -27 285 1 207 206 59 7 chrY 4489267 4489403 -47024181 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 1942 124 57 0 chrY 4489542 4489824 -47023760 + AluSc SINE Alu 1 298 -11 3014 199 17 5 chrY 4489868 4490472 -47023112 + L1MB3 LINE L1 5566 6176 -7 2078 134 0 7 chrY 4490784 4491091 -47022493 - AluSg1 SINE Alu 0 309 5 2131 131 3 3 chrY 4491163 4491461 -47022123 + AluSx SINE Alu 1 298 -14 1920 149 36 0 chrY 4491468 4491769 -47021815 + AluSx SINE Alu 1 312 0 1037 155 184 15 chrY 4491777 4491983 -47021601 + AluSg1 SINE Alu 1 241 -68 1775 195 102 36 chrY 4492604 4492731 -47020853 - MLT1D LTR MaLR -2 503 386 1819 166 0 3 chrY 4492731 4493014 -47020570 + AluJo SINE Alu 1 282 -30 1775 195 102 36 chrY 4493014 4493358 -47020226 - MLT1D LTR MaLR -119 386 1 508 158 11 0 chrY 4493506 4493601 -47019983 - L1PA11 LINE L1 0 6174 6079 426 178 0 0 chrY 4493601 4493674 -47019910 - L1P4 LINE L1 -680 5488 5416 * 4592 123 13 1 chrY 4493650 4494326 -47019258 - L1PA11 LINE L1 -81 6093 5410 1119 172 0 26 chrY 4494618 4494810 -47018774 + AluJo SINE Alu 90 276 -36 1006 139 75 111 chrY 4494844 4495124 -47018460 + L1MA8 LINE L1 6020 6289 -2 1914 142 14 3 chrY 4495131 4495426 -47018158 + AluSx SINE Alu 1 298 -14 213 288 0 0 chrY 4495445 4495518 -47018066 + A-rich Low_complexity Low_complexity 1 73 0 624 198 0 0 chrY 4495557 4495663 -47017921 + FLAM_A SINE Alu 25 130 -12 1838 179 3 0 chrY 4495694 4495995 -47017589 - AluSq SINE Alu -11 302 1 275 205 84 12 chrY 4496087 4496170 -47017414 - MLT1D LTR MaLR -30 475 387 * 1939 163 119 26 chrY 4496165 4496522 -47017062 - MSTA LTR MaLR -6 422 25 2566 102 28 3 chrY 4496522 4496886 -47016698 + THE1C LTR MaLR 3 375 0 1939 163 119 26 chrY 4496886 4496914 -47016670 - MSTA LTR MaLR -403 25 1 1828 220 32 3 chrY 4496914 4497291 -47016293 - MLT1D LTR MaLR -113 392 5 2281 125 0 3 chrY 4497504 4497816 -47015768 - AluY SINE Alu 0 311 1 1693 168 33 4 chrY 4497948 4498222 -47015362 - AluJb SINE Alu -30 282 1 3693 159 2 3 chrY 4498304 4498896 -47014688 + L1PA15 LINE L1 5467 6057 -108 698 236 14 7 chrY 4498901 4499049 -47014535 - AluJo SINE Alu -162 150 2 2146 132 0 7 chrY 4499054 4499349 -47014235 - AluSx SINE Alu -19 293 1 372 318 121 21 chrY 4499438 4499586 -47013998 - HAL1 LINE L1 -145 2362 2230 306 0 0 0 chrY 4499586 4499620 -47013964 + (CA)n Simple_repeat Simple_repeat 2 35 0 372 318 121 21 chrY 4499620 4499983 -47013601 - HAL1 LINE L1 -277 2230 1800 208 170 0 75 chrY 4500030 4500083 -47013501 + MIR SINE MIR 108 156 -106 1889 166 16 3 chrY 4500515 4500823 -47012761 - AluSx SINE Alu 0 312 1 488 192 6 33 chrY 4500833 4501015 -47012569 + CT-rich Low_complexity Low_complexity 2 178 0 209 213 0 32 chrY 4501032 4501126 -47012458 + CT-rich Low_complexity Low_complexity 2 92 0 1670 167 0 44 chrY 4501296 4501431 -47012153 + AluJb SINE Alu 1 140 -172 2100 148 0 0 chrY 4501431 4501729 -47011855 + AluSg SINE Alu 1 298 -12 1670 167 0 44 chrY 4501729 4501910 -47011674 + AluJb SINE Alu 140 303 -9 285 151 0 0 chrY 4502257 4502310 -47011274 + (TG)n Simple_repeat Simple_repeat 1 53 0 1748 179 15 3 chrY 4502469 4502793 -47010791 + MLT1A1 LTR MaLR 1 328 -37 1839 147 27 14 chrY 4502923 4503215 -47010369 + AluSq SINE Alu 1 296 -17 263 260 0 26 chrY 4503412 4503489 -47010095 + L1M3 LINE L1 5633 5707 -473 270 0 0 0 chrY 4503530 4503560 -47010024 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 369 0 0 0 chrY 4503559 4503600 -47009984 + (TA)n Simple_repeat Simple_repeat 2 42 0 236 69 0 0 chrY 4503600 4503629 -47009955 - Alu SINE Alu -17 283 255 2175 122 0 3 chrY 4503632 4503928 -47009656 - AluY SINE Alu -16 295 1 1628 192 3 14 chrY 4503937 4504229 -47009355 - AluJb SINE Alu -23 289 1 1510 126 8 8 chrY 4504255 4504493 -47009091 - L1PA14 LINE L1 -2 6159 5922 2069 149 0 0 chrY 4504575 4504876 -47008708 + AluSg SINE Alu 1 301 -9 292 156 13 13 chrY 4505129 4505206 -47008378 + (TA)n Simple_repeat Simple_repeat 1 77 0 710 171 18 9 chrY 4505412 4505634 -47007950 + CT-rich Low_complexity Low_complexity 1 224 0 1135 212 9 0 chrY 4505653 4505870 -47007714 - AluJb SINE Alu -93 219 1 1380 206 87 4 chrY 4505971 4506247 -47007337 + AluJo SINE Alu 1 299 -13 931 213 6 0 chrY 4506869 4507052 -47006532 - AluJo SINE Alu -8 304 121 22 0 0 0 chrY 4507065 4507087 -47006497 + AT_rich Low_complexity Low_complexity 1 22 0 1613 176 17 10 chrY 4507130 4507420 -47006164 - AluSx SINE Alu -20 292 1 4228 153 52 88 chrY 4507428 4507912 -47005672 - L1MC1 LINE L1 0 6333 5898 1567 215 10 0 chrY 4507912 4508205 -47005379 - AluJo SINE Alu -8 304 9 4228 153 52 88 chrY 4508205 4508674 -47004910 - L1MC1 LINE L1 -435 5898 5414 292 272 86 49 chrY 4508677 4508884 -47004700 - L1ME3A LINE L1 -224 5946 5748 1961 180 30 22 chrY 4508884 4509245 -47004339 + THE1B LTR MaLR 1 364 0 292 272 86 49 chrY 4509245 4509448 -47004136 - L1ME3A LINE L1 -422 5748 5530 33 43 0 0 chrY 4509608 4509655 -47003929 + AT_rich Low_complexity Low_complexity 1 47 0 1284 174 8 43 chrY 4509656 4509891 -47003693 - AluJo SINE Alu -49 263 37 295 270 62 89 chrY 4509913 4510094 -47003490 - L1ME3A LINE L1 -2066 4080 3907 2156 106 7 0 chrY 4510094 4510377 -47003207 + AluSc SINE Alu 1 285 -24 295 270 62 89 chrY 4510377 4510454 -47003130 - L1ME3A LINE L1 -2239 3907 3829 237 285 78 68 chrY 4510483 4510707 -47002877 - L1ME3A LINE L1 -2430 3716 3496 2552 103 5 14 chrY 4510707 4511053 -47002531 - L1PA8 LINE L1 -1 6171 5827 4914 99 133 1 chrY 4511053 4511783 -47001801 - LTR12 LTR ERV1 0 826 1 2552 103 5 14 chrY 4511783 4511806 -47001778 - L1PA8 LINE L1 -345 5827 5805 237 285 78 68 chrY 4511806 4511935 -47001649 - L1ME3A LINE L1 -2650 3496 3370 2042 141 7 10 chrY 4511935 4512241 -47001343 - AluSx SINE Alu -7 305 1 237 285 78 68 chrY 4512241 4512388 -47001196 - L1ME3A LINE L1 -2776 3370 3210 278 186 31 68 chrY 4512429 4512509 -47001075 + A-rich Low_complexity Low_complexity 1 82 -388 1610 161 79 0 chrY 4512509 4512789 -47000795 + AluSx SINE Alu 1 302 -10 278 186 31 68 chrY 4512789 4512918 -47000666 + A-rich Low_complexity Low_complexity 82 470 0 863 229 33 0 chrY 4513933 4514116 -46999468 + MER2 DNA MER2_type 1 189 -156 42429 41 23 1 chrY 4514148 4520106 -46993478 - L1PA2 LINE L1 -4 6151 60 886 178 13 0 chrY 4520106 4520258 -46993326 - FRAM SINE Alu -22 154 1 23 0 0 0 chrY 4520258 4520281 -46993303 + AT_rich Low_complexity Low_complexity 1 23 0 1298 121 0 53 chrY 4520303 4520509 -46993075 - AluSx SINE Alu -117 195 1 877 154 70 0 chrY 4520810 4520953 -46992631 + FRAM SINE Alu 11 163 -13 632 213 7 28 chrY 4521203 4521344 -46992240 - MLT1C LTR MaLR 0 467 330 2669 191 36 38 chrY 4521346 4521471 -46992113 - LTR39 LTR ERV1 -28 755 631 1813 175 3 0 chrY 4521471 4521763 -46991821 + AluJb SINE Alu 6 298 -14 2669 191 36 38 chrY 4521763 4522167 -46991417 - LTR39 LTR ERV1 -152 631 227 390 134 0 0 chrY 4522167 4522234 -46991350 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 265 206 309 0 chrY 4522235 4522332 -46991252 - AluSp/q SINE Alu -5 298 172 1421 219 137 35 chrY 4522367 4522850 -46990734 - LTR10B LTR ERV1 -3 544 13 1148 104 0 0 chrY 4522870 4523014 -46990570 - AluSq/x SINE Alu -169 144 1 843 145 38 44 chrY 4523014 4523072 -46990512 - LTR39 LTR ERV1 -554 229 172 2007 138 3 10 chrY 4523072 4523377 -46990207 - AluSq SINE Alu -7 306 4 843 145 38 44 chrY 4523377 4523477 -46990107 - LTR39 LTR ERV1 -611 172 72 237 220 0 17 chrY 4523465 4523524 -46990060 - MER61C LTR ERV1 -66 368 311 * 437 151 75 32 chrY 4523519 4523612 -46989972 - LTR39 LTR ERV1 -686 97 1 2279 113 3 0 chrY 4523613 4523940 -46989644 + MER41B LTR ERV1 1 328 -307 1569 164 63 13 chrY 4523954 4524253 -46989331 + MER61A LTR ERV1 30 343 0 1046 113 0 0 chrY 4524253 4524387 -46989197 + MER41B LTR ERV1 323 456 -179 831 191 0 0 chrY 4524390 4524537 -46989047 + AluSg/x SINE Alu 165 311 -1 2112 122 3 0 chrY 4524551 4524839 -46988745 + AluSx SINE Alu 1 289 -23 1138 160 5 5 chrY 4524847 4525047 -46988537 + MER41B LTR ERV1 436 635 0 923 222 105 52 chrY 4525061 4525166 -46988418 - MLT1C LTR MaLR -145 322 224 420 20 0 0 chrY 4525166 4525215 -46988369 + (TG)n Simple_repeat Simple_repeat 2 50 0 923 222 105 52 chrY 4525215 4525351 -46988233 - MLT1C LTR MaLR -243 224 59 3374 123 123 4 chrY 4525351 4525635 -46987949 + MER41B LTR ERV1 4 253 -382 315 71 0 0 chrY 4525635 4525677 -46987907 + (CCCTAA)n Simple_repeat Simple_repeat 1 42 0 3374 123 123 4 chrY 4525677 4525955 -46987629 + MER41B LTR ERV1 253 633 -2 923 222 105 52 chrY 4525955 4526018 -46987566 - MLT1C LTR MaLR -408 59 1 189 221 0 103 chrY 4526163 4526231 -46987353 - MER5B DNA MER1_type -8 170 110 1567 181 3 3 chrY 4526259 4526546 -46987038 - AluSx SINE Alu -21 291 5 1026 198 138 48 chrY 4526637 4526905 -46986679 + AluJo SINE Alu 1 292 -10 4274 57 14 16 chrY 4527547 4528106 -46985478 + LTR6B LTR ERV1 1 558 0 3261 149 76 117 chrY 4528405 4529343 -46984241 + pTR5 LTR ERV1 1131 2293 -145 1776 120 40 4 chrY 4529363 4529673 -46983911 + AluSx SINE Alu 3 312 0 1547 146 0 11 chrY 4530371 4530631 -46982953 + AluSx SINE Alu 1 257 -55 1383 200 40 0 chrY 4530675 4530975 -46982609 - AluJo SINE Alu 0 312 1 2176 109 0 3 chrY 4531159 4531461 -46982123 + AluSx SINE Alu 1 301 -11 27 0 0 0 chrY 4531598 4531625 -46981959 + AT_rich Low_complexity Low_complexity 1 27 0 1839 160 0 0 chrY 4531625 4531912 -46981672 - AluSx SINE Alu -25 287 1 1509 211 20 0 chrY 4531934 4532232 -46981352 - AluJo SINE Alu -8 304 1 225 178 0 0 chrY 4532793 4532838 -46980746 + A-rich Low_complexity Low_complexity 1 45 0 448 200 62 62 chrY 4532879 4533009 -46980575 - AluJb SINE Alu -177 135 6 1032 140 34 0 chrY 4533185 4533364 -46980220 - L1MA5A LINE L1 -2 6295 6111 333 118 0 0 chrY 4533371 4533410 -46980174 + (TG)n Simple_repeat Simple_repeat 1 90 0 333 118 0 0 chrY 4533410 4533461 -46980123 + (TG)n Simple_repeat Simple_repeat 2 52 0 1798 154 0 0 chrY 4533461 4533747 -46979837 - AluSx SINE Alu -26 286 1 342 215 0 0 chrY 4533762 4533841 -46979743 + (CA)n Simple_repeat Simple_repeat 2 80 0 1648 161 18 0 chrY 4533855 4534128 -46979456 - AluJb SINE Alu -22 290 13 478 146 0 0 chrY 4534139 4534221 -46979363 - L1MA5A LINE L1 -177 6120 6039 256 132 0 0 chrY 4534476 4534514 -46979070 + MADE1 DNA Mariner 2 39 -41 1130 148 30 15 chrY 4534514 4534535 -46979049 - AluSg/x SINE Alu -12 298 279 201 39 0 0 chrY 4534535 4534561 -46979023 + (TG)n Simple_repeat Simple_repeat 1 26 0 1130 148 30 15 chrY 4534561 4534741 -46978843 - AluSg/x SINE Alu -31 279 94 1069 165 133 39 chrY 4534843 4535098 -46978486 + AluJo SINE Alu 15 293 -19 823 222 0 30 chrY 4535285 4535452 -46978132 - FRAM SINE Alu 0 166 5 1671 152 0 0 chrY 4535456 4535713 -46977871 - AluSq SINE Alu -54 259 3 216 0 0 0 chrY 4535726 4535750 -46977834 + (CA)n Simple_repeat Simple_repeat 2 25 0 633 124 38 0 chrY 4535752 4535857 -46977727 + L1PB4 LINE L1 5793 5901 -255 21 82 0 0 chrY 4535874 4535923 -46977661 + AT_rich Low_complexity Low_complexity 1 49 0 368 241 36 18 chrY 4535929 4536095 -46977489 + (TA)n Simple_repeat Simple_repeat 2 170 0 1085 157 77 119 chrY 4536156 4536468 -46977116 - AluJo SINE Alu -3 299 1 319 240 48 41 chrY 4537714 4537860 -46975724 + MER53 DNA DNA 37 183 -6 24 32 0 0 chrY 4538336 4538367 -46975217 + GC_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chrY 4538906 4538938 -46974646 + GC_rich Low_complexity Low_complexity 1 32 0 397 308 0 22 chrY 4540206 4540388 -46973196 + CT-rich Low_complexity Low_complexity 2 179 0 270 0 0 0 chrY 4540934 4540964 -46972620 + (TG)n Simple_repeat Simple_repeat 2 31 0 1758 128 0 8 chrY 4541444 4541709 -46971875 + AluSq SINE Alu 1 263 -50 1272 219 0 28 chrY 4542037 4542357 -46971227 + AluJo SINE Alu 1 311 -1 291 54 0 0 chrY 4542381 4542418 -46971166 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 1912 148 0 0 chrY 4542569 4542866 -46970718 + AluSg SINE Alu 1 297 -13 285 256 49 24 chrY 4543034 4543116 -46970468 + MIR SINE MIR 100 183 -79 478 269 60 0 chrY 4543153 4543320 -46970264 - L1MD3 LINE L1 -17 7978 7802 1777 148 13 20 chrY 4543321 4543626 -46969958 - AluJo SINE Alu -9 303 1 362 238 20 86 chrY 4543626 4543777 -46969807 - L1MD2 LINE L1 -176 6183 6043 2127 223 21 23 chrY 4543934 4544446 -46969138 - LTR10D LTR ERV1 -2 511 1 259 222 0 0 chrY 4544516 4544561 -46969023 - MLT1A1 LTR MaLR -5 360 316 962 99 0 0 chrY 4544561 4544692 -46968892 - AluY SINE Alu -13 298 168 1796 158 13 13 chrY 4544692 4545003 -46968581 - MLT1A1 LTR MaLR -54 311 1 205 96 0 58 chrY 4545341 4545393 -46968191 + (TTAAA)n Simple_repeat Simple_repeat 1 49 0 469 139 0 0 chrY 4545423 4545495 -46968089 - FLAM_A SINE Alu -26 116 45 220 342 34 26 chrY 4545497 4545614 -46967970 + L2 LINE L2 3191 3308 -5 330 219 114 38 chrY 4545614 4545719 -46967865 + MER81 DNA DNA 1 113 -1 2377 75 0 0 chrY 4545859 4546165 -46967419 - AluY SINE Alu -5 306 1 1344 198 10 17 chrY 4546170 4546468 -46967116 - AluJo SINE Alu -10 302 7 578 158 53 9 chrY 4546700 4546814 -46966770 + AluJb SINE Alu 177 295 -17 1394 180 3 49 chrY 4546823 4546949 -46966635 + AluJb SINE Alu 1 131 -181 1872 141 7 0 chrY 4546949 4547240 -46966344 - AluSg SINE Alu -17 293 1 1394 180 3 49 chrY 4547240 4547419 -46966165 + AluJb SINE Alu 131 292 -20 187 200 0 0 chrY 4547443 4547478 -46966106 + L2 LINE L2 3261 3295 -18 207 0 0 0 chrY 4547603 4547626 -46965958 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1771 199 26 14 chrY 4547895 4548241 -46965343 + MLT1A1 LTR MaLR 14 363 -2 948 205 30 43 chrY 4548567 4548801 -46964783 + L1MB5 LINE L1 5936 6166 -8 1239 134 5 0 chrY 4548918 4549112 -46964472 - AluSg/x SINE Alu -19 293 99 2047 183 10 16 chrY 4549205 4549426 -46964158 - MLT1B LTR MaLR 0 390 170 1496 178 20 20 chrY 4549426 4549730 -46963854 - AluJo SINE Alu -8 304 1 2047 183 10 16 chrY 4549730 4549896 -46963688 - MLT1B LTR MaLR -220 170 5 240 268 0 0 chrY 4550042 4550098 -46963486 - MLT1C LTR MaLR 0 467 412 1268 187 8 8 chrY 4550110 4550356 -46963228 + L1MA8 LINE L1 5676 5921 -370 1528 170 21 10 chrY 4550358 4550646 -46962938 - AluJb SINE Alu -21 291 1 2006 135 0 6 chrY 4551061 4551373 -46962211 + AluSx SINE Alu 1 310 -2 990 140 0 28 chrY 4551726 4551905 -46961679 - FRAM SINE Alu -7 169 1 1694 176 10 13 chrY 4552041 4552348 -46961236 + AluJb SINE Alu 1 306 -6 3965 116 2 0 chrY 4552905 4553458 -46960126 - MER41A LTR ERV1 0 554 1 1718 132 62 10 chrY 4553629 4553949 -46959635 + AluSg SINE Alu 1 310 0 1299 209 14 17 chrY 4553962 4554254 -46959330 + AluJo SINE Alu 12 302 -10 21 0 0 0 chrY 4554285 4554306 -46959278 + AT_rich Low_complexity Low_complexity 1 21 0 1599 163 12 35 chrY 4554461 4554780 -46958804 + AluJb SINE Alu 1 312 0 244 233 0 17 chrY 4554783 4554843 -46958741 + A-rich Low_complexity Low_complexity 3 61 0 313 279 15 7 chrY 4554971 4555107 -46958477 - L1M4 LINE L1 -2910 3236 3100 736 195 31 130 chrY 4555500 4555593 -46957991 - MLT1C LTR MaLR -199 268 167 1754 151 3 7 chrY 4555593 4555897 -46957687 - AluSq SINE Alu -10 303 1 736 195 31 130 chrY 4555897 4556095 -46957489 - MLT1C LTR MaLR -300 167 6 1468 178 20 30 chrY 4556718 4557016 -46956568 - AluJo SINE Alu -17 295 1 1746 178 0 0 chrY 4557134 4557432 -46956152 - AluSx SINE Alu -14 298 1 2051 128 3 0 chrY 4557442 4557740 -46955844 - AluSp SINE Alu -14 299 1 2123 103 0 13 chrY 4558050 4558360 -46955224 - AluY SINE Alu -5 306 1 1347 185 56 0 chrY 4558602 4558872 -46954712 + AluJo SINE Alu 3 291 -21 198 0 0 0 chrY 4558872 4558894 -46954690 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1347 185 56 0 chrY 4558894 4558910 -46954674 + AluJo SINE Alu 291 305 -7 644 155 0 39 chrY 4558921 4559050 -46954534 + L1MB3 LINE L1 6059 6182 -1 780 191 8 0 chrY 4559087 4559218 -46954366 + FLAM_C SINE Alu 2 133 0 1720 164 0 7 chrY 4559545 4559844 -46953740 - AluJb SINE Alu -13 299 3 215 275 232 21 chrY 4560040 4560182 -46953402 - MIR SINE MIR -12 250 79 493 159 35 24 chrY 4560237 4560407 -46953177 + GA-rich Low_complexity Low_complexity 1 172 0 1054 190 0 5 chrY 4560506 4560701 -46952883 + AluJo SINE Alu 1 194 -118 1902 137 0 10 chrY 4560733 4561039 -46952545 + AluSg1 SINE Alu 1 303 -6 865 196 5 21 chrY 4561039 4561217 -46952367 + AluSg/x SINE Alu 136 312 0 906 210 44 0 chrY 4561221 4561426 -46952158 + MLT1B LTR MaLR 172 385 -5 1735 156 7 13 chrY 4561854 4562161 -46951423 - AluJo SINE Alu -7 305 1 1380 219 68 34 chrY 4562513 4562949 -46950635 - MLT1C LTR MaLR -19 444 1 339 226 226 5 chrY 4562959 4563149 -46950435 - MLT1C LTR MaLR -122 345 114 360 0 0 0 chrY 4563149 4563189 -46950395 + (TA)n Simple_repeat Simple_repeat 2 41 0 296 145 9 49 chrY 4563199 4563304 -46950280 - AluJo SINE Alu -166 136 1 421 240 10 0 chrY 4563317 4563421 -46950163 - MLT1C LTR MaLR -359 108 4 984 163 11 16 chrY 4564043 4564260 -46949324 - AluSg/x SINE Alu 0 315 100 274 263 0 0 chrY 4564441 4564498 -46949086 - MLT1J LTR MaLR -339 172 116 892 164 19 6 chrY 4565792 4565951 -46947633 + AluJb SINE Alu 129 289 -23 1793 217 36 36 chrY 4566039 4566217 -46947367 - L1MA9 LINE L1 -191 6121 5944 2522 111 3 14 chrY 4566217 4566585 -46946999 - THE1B LTR MaLR 0 364 1 1793 217 36 36 chrY 4566585 4566849 -46946735 - L1MA9 LINE L1 -367 5945 5679 952 191 156 13 chrY 4567235 4567460 -46946124 + AluSg1 SINE Alu 9 265 -44 182 191 21 0 chrY 4567563 4567610 -46945974 + GA-rich Low_complexity Low_complexity 1 48 0 437 244 0 13 chrY 4567722 4567878 -46945706 + GA-rich Low_complexity Low_complexity 1 154 0 213 132 0 0 chrY 4568278 4568316 -46945268 + (TC)n Simple_repeat Simple_repeat 2 39 0 1987 164 40 3 chrY 4569204 4569552 -46944032 - MLT1A1 LTR MaLR 0 365 5 1098 118 0 0 chrY 4570238 4570391 -46943193 + AluSx SINE Alu 5 157 -155 1574 185 0 17 chrY 4570671 4570969 -46942615 - AluSx SINE Alu -19 293 1 7542 37 2 0 chrY 4571027 4572408 -46941176 - L1PA4 LINE L1 0 6155 4774 27 49 0 0 chrY 4572484 4572525 -46941059 + AT_rich Low_complexity Low_complexity 1 41 0 854 189 0 0 chrY 4572530 4572694 -46940890 - AluJb SINE Alu -26 286 123 25 31 0 0 chrY 4572694 4572726 -46940858 + AT_rich Low_complexity Low_complexity 1 32 0 805 268 9 5 chrY 4572804 4573017 -46940567 - AluJo SINE Alu -98 214 1 698 197 0 0 chrY 4573325 4573447 -46940137 + FLAM_C SINE Alu 5 126 -7 1237 192 0 0 chrY 4573463 4573687 -46939897 + AluSg/x SINE Alu 87 310 -2 1749 177 0 0 chrY 4573896 4574184 -46939400 + AluJb SINE Alu 5 292 -20 619 242 43 54 chrY 4574701 4574887 -46938697 - MER20 DNA MER1_type -35 184 1 360 209 52 29 chrY 4574888 4575060 -46938524 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 700 195 65 18 chrY 4575562 4575731 -46937853 - MER20 DNA MER1_type 0 219 43 198 0 0 0 chrY 4575829 4575851 -46937733 + (TGGA)n Simple_repeat Simple_repeat 1 22 0 426 182 22 37 chrY 4575884 4576137 -46937447 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 192 77 0 0 chrY 4576147 4576173 -46937411 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 2023 148 7 0 chrY 4576282 4576587 -46936997 - AluSx SINE Alu -5 307 1 2337 98 0 0 chrY 4576635 4576932 -46936652 - AluY SINE Alu -14 297 1 587 267 37 37 chrY 4577241 4577432 -46936152 - MER20 DNA MER1_type -27 192 2 334 197 58 15 chrY 4577531 4577668 -46935916 + (TAGA)n Simple_repeat Simple_repeat 3 145 0 676 225 70 47 chrY 4577705 4577918 -46935666 - MER20 DNA MER1_type -1 218 1 218 169 42 68 chrY 4577919 4578037 -46935547 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 26 50 0 0 chrY 4578106 4578146 -46935438 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrY 4578999 4579022 -46934562 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1439 203 0 20 chrY 4579336 4579631 -46933953 - AluJo SINE Alu -21 291 3 496 229 110 0 chrY 4579637 4579755 -46933829 - FLAM_C SINE Alu -11 132 2 544 208 0 0 chrY 4579790 4579886 -46933698 + AluSg/x SINE Alu 170 265 -45 1964 193 23 44 chrY 4579897 4580375 -46933209 - L1MB3 LINE L1 -56 6127 5660 1810 160 13 7 chrY 4580389 4580696 -46932888 - AluSx SINE Alu -3 309 1 286 189 0 0 chrY 4580939 4580992 -46932592 - MER4-int LTR ERV1 -5434 1164 1112 209 261 22 0 chrY 4580992 4581038 -46932546 + (CACG)n Simple_repeat Simple_repeat 3 49 0 1879 185 19 29 chrY 4581150 4581561 -46932023 - L1PB4 LINE L1 -1 6155 5749 1706 179 0 13 chrY 4581592 4581893 -46931691 + AluJo SINE Alu 11 307 -5 1442 207 14 30 chrY 4582467 4582762 -46930822 - AluJo SINE Alu -17 295 6 748 169 0 0 chrY 4582937 4583055 -46930529 + AluJo/FLAM SINE Alu 2 119 -193 1383 199 33 11 chrY 4583055 4583326 -46930258 - AluJo SINE Alu -17 295 19 561 181 17 17 chrY 4583332 4583448 -46930136 - AluJo SINE Alu -166 146 31 1809 179 0 3 chrY 4584132 4584428 -46929156 - AluJo SINE Alu -14 298 4 229 185 31 0 chrY 4584818 4584883 -46928701 + CT-rich Low_complexity Low_complexity 4 70 0 300 53 0 0 chrY 4585241 4585279 -46928305 + (GA)n Simple_repeat Simple_repeat 1 38 0 1171 145 0 5 chrY 4585809 4585995 -46927589 + AluSg/x SINE Alu 128 312 0 1587 168 50 17 chrY 4586418 4586716 -46926868 - AluJo SINE Alu -4 308 1 1435 184 75 4 chrY 4587114 4587234 -46926350 + AluJb SINE Alu 1 111 -201 359 41 20 0 chrY 4587234 4587283 -46926301 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1435 184 75 4 chrY 4587283 4587428 -46926156 + AluJb SINE Alu 111 285 -27 1876 209 19 0 chrY 4587864 4588242 -46925342 - MLT1B LTR MaLR -4 386 2 963 249 63 20 chrY 4588345 4588695 -46924889 + MLT1A1 LTR MaLR 1 365 0 1005 107 4 179 chrY 4588949 4589183 -46924401 - 7SK RNA RNA 0 193 1 965 162 6 6 chrY 4590935 4591117 -46922467 + L1PB3 LINE L1 5830 6011 -143 1501 173 71 0 chrY 4591538 4591792 -46921792 + AluJo SINE Alu 28 299 -13 30 69 0 0 chrY 4591855 4591913 -46921671 + AT_rich Low_complexity Low_complexity 1 58 0 411 38 0 0 chrY 4592030 4592083 -46921501 + (TG)n Simple_repeat Simple_repeat 1 53 0 1612 159 19 0 chrY 4592115 4592386 -46921198 - AluSx SINE Alu -19 293 18 1668 199 0 10 chrY 4592590 4592897 -46920687 - AluJo SINE Alu -8 304 1 1955 119 37 14 chrY 4592953 4593248 -46920336 - AluSg SINE Alu -8 302 1 1901 123 20 20 chrY 4593619 4593921 -46919663 - AluSx SINE Alu -10 302 1 2103 108 0 51 chrY 4593933 4594248 -46919336 - AluY SINE Alu -4 307 9 560 193 0 83 chrY 4594250 4594395 -46919189 - AluJo SINE Alu -178 134 2 913 222 43 32 chrY 4594831 4595110 -46918474 - Charlie5 DNA MER1_type 0 2624 2343 753 187 0 8 chrY 4595121 4595255 -46918329 + FLAM_C SINE Alu 1 133 0 1102 130 17 74 chrY 4595279 4595510 -46918074 - MER39 LTR ERV1 -84 623 406 906 184 92 10 chrY 4595523 4595719 -46917865 - MSTC LTR MaLR -50 378 167 618 164 8 60 chrY 4595755 4595889 -46917695 - L1PB2 LINE L1 -3 6148 6022 1967 147 3 7 chrY 4595890 4596197 -46917387 - AluSx SINE Alu -6 306 1 2143 138 0 0 chrY 4596434 4596732 -46916852 - AluSx SINE Alu -5 307 10 2078 134 3 0 chrY 4597035 4597327 -46916257 - AluSg SINE Alu -17 293 1 1755 199 0 0 chrY 4597327 4597665 -46915919 - AluSx SINE Alu 0 312 1 1739 191 0 0 chrY 4597789 4598088 -46915496 - AluJo SINE Alu -9 303 5 316 146 49 0 chrY 4598088 4598170 -46915414 + C-rich Low_complexity Low_complexity 1 86 0 182 174 14 43 chrY 4598174 4598243 -46915341 + T-rich Low_complexity Low_complexity 3 69 0 1320 152 22 30 chrY 4598572 4598803 -46914781 - MER46A DNA MER2_type -7 229 1 700 186 8 0 chrY 4598922 4599046 -46914538 - AluJb SINE Alu -179 133 9 251 313 35 28 chrY 4599188 4599332 -46914252 - L1MC5 LINE L1 -54 7907 7763 306 113 0 113 chrY 4599426 4599488 -46914096 + AluJo SINE Alu 85 139 -163 417 237 14 3 chrY 4599490 4599645 -46913939 + MER58A DNA MER1_type 22 224 0 1326 216 97 8 chrY 4599677 4600028 -46913556 + L1MB3 LINE L1 5790 6171 -12 267 228 44 7 chrY 4600034 4600170 -46913414 + (TA)n Simple_repeat Simple_repeat 2 142 0 210 197 59 46 chrY 4600150 4600302 -46913282 + (TATAA)n Simple_repeat Simple_repeat 4 157 0 * 270 294 17 6 chrY 4600379 4600556 -46913028 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chrY 4600561 4600582 -46913002 + AT_rich Low_complexity Low_complexity 1 21 0 695 168 10 122 chrY 4601378 4601438 -46912146 - L1MB5 LINE L1 -1 6179 6114 1801 174 10 3 chrY 4601438 4601732 -46911852 - AluJo SINE Alu -16 296 1 695 168 10 122 chrY 4601732 4601867 -46911717 - L1MB5 LINE L1 -66 6114 6006 459 215 116 16 chrY 4601867 4601988 -46911596 - MLT1C LTR MaLR -327 140 8 1386 222 36 13 chrY 4602946 4603110 -46910474 - AluJo SINE Alu -3 309 133 2038 124 7 0 chrY 4603110 4603392 -46910192 - AluSq SINE Alu -20 293 10 1386 222 36 13 chrY 4603392 4603529 -46910055 - AluJo SINE Alu -179 133 1 39 68 0 0 chrY 4603906 4603980 -46909604 + AT_rich Low_complexity Low_complexity 1 74 0 1147 158 87 0 chrY 4604301 4604497 -46909087 - LTR36 LTR ERV1 0 611 399 1737 150 26 0 chrY 4604650 4604917 -46908667 - AluSg SINE Alu -36 274 1 27 49 0 0 chrY 4604982 4605023 -46908561 + AT_rich Low_complexity Low_complexity 1 41 0 1769 167 40 12 chrY 4605030 4605359 -46908225 - L1PA15 LINE L1 -13 6152 5815 615 182 9 0 chrY 4606119 4606229 -46907355 + HY1 scRNA scRNA 1 111 -1 4178 121 16 3 chrY 4606414 4606531 -46907053 - MER41B LTR ERV1 0 635 521 1911 131 21 0 chrY 4606531 4606813 -46906771 + AluSc SINE Alu 22 309 0 4178 121 16 3 chrY 4606813 4607322 -46906262 - MER41B LTR ERV1 -114 521 1 822 147 11 17 chrY 4608347 4608524 -46905060 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 485 241 29 3 chrY 4608618 4608967 -46904617 + (TCTA)n Simple_repeat Simple_repeat 1 358 0 1716 117 72 19 chrY 4609101 4609365 -46904219 + AluSp SINE Alu 1 278 -35 216 0 0 0 chrY 4609372 4609396 -46904188 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chrY 4609667 4609695 -46903889 + AT_rich Low_complexity Low_complexity 1 28 0 222 176 0 59 chrY 4609762 4609830 -46903754 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 1878 139 3 10 chrY 4609857 4610152 -46903432 + AluSq SINE Alu 3 295 -18 1476 216 0 16 chrY 4611411 4611717 -46901867 + AluJo SINE Alu 1 301 -11 388 258 8 25 chrY 4612046 4612166 -46901418 - Charlie1 DNA MER1_type -4 2757 2640 22 56 0 0 chrY 4612175 4612211 -46901373 + AT_rich Low_complexity Low_complexity 1 36 0 1592 154 16 46 chrY 4612309 4612615 -46900969 + AluJb SINE Alu 1 297 -15 308 339 6 17 chrY 4612617 4612791 -46900793 - Charlie1 DNA MER1_type -240 2521 2350 28 0 0 0 chrY 4613017 4613045 -46900539 + AT_rich Low_complexity Low_complexity 1 28 0 1898 142 14 14 chrY 4613045 4613334 -46900250 - AluSx SINE Alu -23 289 1 1899 149 13 16 chrY 4613698 4614006 -46899578 - AluJo SINE Alu -4 308 2 1661 168 7 46 chrY 4614008 4614311 -46899273 - AluJo SINE Alu -19 293 3 2021 147 3 0 chrY 4614313 4614606 -46898978 - AluJo SINE Alu -18 294 1 1145 240 102 37 chrY 4615597 4616030 -46897554 - MLT1C LTR MaLR -1 466 6 1717 168 145 18 chrY 4616317 4616697 -46896887 + MSTA LTR MaLR 1 428 0 23 54 0 0 chrY 4616746 4616783 -46896801 + AT_rich Low_complexity Low_complexity 1 37 0 1002 194 20 10 chrY 4617038 4617234 -46896350 + AluJo SINE Alu 97 294 -18 1414 186 0 77 chrY 4617333 4617644 -46895940 + AluJo SINE Alu 5 291 -21 446 129 0 0 chrY 4617882 4617944 -46895640 - AluSg/x SINE Alu -38 274 213 1788 169 4 0 chrY 4618048 4618321 -46895263 - AluSx SINE Alu -38 274 1 423 149 0 0 chrY 4618321 4618395 -46895189 + (TACTG)n Simple_repeat Simple_repeat 4 77 0 1030 215 14 9 chrY 4618417 4618640 -46894944 - AluJb SINE Alu -2 310 87 5529 138 9 74 chrY 4618644 4619454 -46894130 - L1MA5A LINE L1 0 6297 5436 1850 158 3 26 chrY 4619454 4619764 -46893820 + AluJb SINE Alu 2 304 -8 5529 138 9 74 chrY 4619764 4619831 -46893753 - L1MA5A LINE L1 -861 5436 5366 1983 126 11 3 chrY 4619831 4620117 -46893467 - AluSq SINE Alu -3 310 23 5529 138 9 74 chrY 4620117 4620336 -46893248 - L1MA5A LINE L1 -931 5366 5271 1625 189 7 13 chrY 4622011 4622318 -46891266 + AluJo SINE Alu 1 305 -7 207 0 0 0 chrY 4622318 4622341 -46891243 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 35 0 0 chrY 4622363 4622392 -46891192 + (CA)n Simple_repeat Simple_repeat 2 30 0 476 183 119 71 chrY 4622740 4622866 -46890718 - FLAM_C SINE Alu -1 132 1 1459 184 24 24 chrY 4623369 4623663 -46889921 - AluJo SINE Alu -14 298 5 216 62 42 21 chrY 4623753 4623801 -46889783 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1505 168 7 46 chrY 4624774 4625059 -46888525 - AluSx SINE Alu -10 302 29 658 283 5 24 chrY 4625145 4625350 -46888234 - L1MB8 LINE L1 0 6178 5978 524 65 0 0 chrY 4625350 4625412 -46888172 - Charlie3 DNA MER1_type -4 2706 2645 * 1524 158 12 20 chrY 4625409 4625656 -46887928 - Charlie3 DNA MER1_type -2464 246 2 1306 226 10 3 chrY 4625657 4625966 -46887618 - L1MB8 LINE L1 -193 5985 5675 1255 219 90 42 chrY 4626308 4626718 -46886866 - MLT1C LTR MaLR -16 451 22 1101 209 85 42 chrY 4626749 4627079 -46886505 - MLT1C LTR MaLR -123 344 1 2822 188 38 45 chrY 4627480 4627656 -46885928 - L1MA8 LINE L1 -1 6290 6114 866 144 8 0 chrY 4627656 4627781 -46885803 - FLAM_C SINE Alu -6 127 2 2822 188 38 45 chrY 4627781 4628029 -46885555 - L1MA8 LINE L1 -177 6114 5866 1390 181 96 4 chrY 4628029 4628310 -46885274 - AluSx SINE Alu -3 309 3 2822 188 38 45 chrY 4628310 4628593 -46884991 - L1MA8 LINE L1 -425 5866 5587 32 57 0 0 chrY 4629210 4629263 -46884321 + AT_rich Low_complexity Low_complexity 1 53 0 376 178 25 6 chrY 4629398 4629555 -46884029 + (TA)n Simple_repeat Simple_repeat 1 160 0 1594 208 3 3 chrY 4629564 4629862 -46883722 + AluJo SINE Alu 2 299 -13 656 219 16 1 chrY 4629862 4630117 -46883467 - Tigger3(Golem) DNA MER2_type -2738 291 1 232 94 0 125 chrY 4630120 4630138 -46883446 + (CA)n Simple_repeat Simple_repeat 2 21 -36 1725 188 3 7 chrY 4630138 4630430 -46883154 - AluJb SINE Alu -17 295 5 232 94 0 125 chrY 4630430 4630475 -46883109 + (CA)n Simple_repeat Simple_repeat 21 57 0 235 189 38 0 chrY 4630510 4630563 -46883021 + L1MC4 LINE L1 6649 6703 -1339 280 133 33 44 chrY 4630564 4630654 -46882930 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 252 155 141 0 chrY 4630656 4630727 -46882857 - L1MC3 LINE L1 -1137 6648 6568 400 174 0 37 chrY 4630731 4630840 -46882744 + (TATATG)n Simple_repeat Simple_repeat 6 110 0 267 297 25 55 chrY 4631469 4631607 -46881977 + MIR3 SINE MIR 28 162 -46 955 168 9 24 chrY 4632178 4632376 -46881208 - L1MA4A LINE L1 -342 5963 5766 864 159 8 0 chrY 4632393 4632525 -46881059 - FLAM_C SINE Alu 0 133 1 298 116 0 0 chrY 4632525 4632568 -46881016 - L1MA4A LINE L1 -505 5786 5744 1660 208 0 0 chrY 4632785 4633078 -46880506 + AluSx SINE Alu 3 295 -17 2020 122 0 0 chrY 4633079 4633350 -46880234 + AluSc SINE Alu 22 292 -17 271 278 28 0 chrY 4633381 4633453 -46880131 - MIR SINE MIR -119 143 70 3105 157 10 40 chrY 4633466 4633520 -46880064 - L1MA4A LINE L1 -27 6276 6222 2003 144 0 16 chrY 4633520 4633832 -46879752 + AluSg1 SINE Alu 1 307 -2 3105 157 10 40 chrY 4633832 4634182 -46879402 - L1MA4A LINE L1 -81 6222 5890 1805 159 44 0 chrY 4634182 4634478 -46879106 - AluSx SINE Alu -3 309 1 3105 157 10 40 chrY 4634478 4634670 -46878914 - L1MA4A LINE L1 -413 5890 5694 2008 153 0 10 chrY 4634808 4635108 -46878476 - AluSx SINE Alu -13 299 3 532 226 50 91 chrY 4635254 4635486 -46878098 - L1MC4a LINE L1 -1759 6049 5830 2104 129 0 0 chrY 4635486 4635781 -46877803 - AluSx SINE Alu -17 295 1 532 226 50 91 chrY 4635781 4635845 -46877739 - L1MC4a LINE L1 -1978 5830 5765 1692 172 0 14 chrY 4635862 4636152 -46877432 - AluJo SINE Alu -26 286 1 33 0 0 0 chrY 4636993 4637026 -46876558 + AT_rich Low_complexity Low_complexity 1 33 0 2073 145 0 0 chrY 4638101 4638405 -46875179 - AluSc SINE Alu -5 304 1 1960 122 18 4 chrY 4638462 4638768 -46874816 - AluSx SINE Alu 0 310 1 2153 105 14 3 chrY 4638976 4639272 -46874312 + AluSc SINE Alu 1 299 -10 1513 202 24 3 chrY 4639521 4639808 -46873776 + AluJb SINE Alu 1 293 -19 1781 128 4 0 chrY 4639811 4640062 -46873522 + AluSq SINE Alu 1 252 -61 189 0 0 0 chrY 4640601 4640622 -46872962 + (TG)n Simple_repeat Simple_repeat 2 22 0 1686 180 3 30 chrY 4641012 4641312 -46872272 + AluJb SINE Alu 1 292 -20 1636 148 35 35 chrY 4642456 4642746 -46870838 + AluJb SINE Alu 14 303 -9 726 227 8 0 chrY 4642817 4642945 -46870639 + FLAM_C SINE Alu 2 130 -3 712 140 0 9 chrY 4643261 4643368 -46870216 + U6 snRNA snRNA 2 107 0 2010 133 7 7 chrY 4643947 4644255 -46869329 + AluSx SINE Alu 3 310 -2 245 219 110 0 chrY 4646196 4646269 -46867315 - MER58 DNA MER1_type 0 2420 2340 522 227 0 0 chrY 4646296 4646393 -46867191 + AluJo SINE Alu 6 102 -210 30 45 0 0 chrY 4646754 4646798 -46866786 + AT_rich Low_complexity Low_complexity 1 44 0 810 176 0 16 chrY 4646966 4647091 -46866493 + AluJo SINE Alu 90 212 -100 342 0 0 0 chrY 4647093 4647131 -46866453 + (TG)n Simple_repeat Simple_repeat 2 39 0 204 144 68 34 chrY 4647131 4647249 -46866335 + (TAGA)n Simple_repeat Simple_repeat 2 123 0 1075 177 32 45 chrY 4647281 4647501 -46866083 - MER20 DNA MER1_type -1 218 2 648 306 111 34 chrY 4647946 4648461 -46865123 + L2 LINE L2 2729 3286 -27 2217 110 3 7 chrY 4648641 4648950 -46864634 + AluSq SINE Alu 1 308 -5 1694 178 0 14 chrY 4649648 4649958 -46863626 + AluJo SINE Alu 2 307 0 277 257 0 54 chrY 4650006 4650080 -46863504 + MER63 DNA MER1_type 672 741 -95 21298 110 22 10 chrY 4650080 4653918 -46859666 - HERV9 LTR ERV1 -4429 3970 1 4647 71 138 133 chrY 4653918 4654740 -46858844 - LTR12 LTR ERV1 0 826 1 3188 203 27 34 chrY 4654741 4655022 -46858562 + MER4D LTR ERV1 195 476 -427 2069 137 10 3 chrY 4655022 4655328 -46858256 + AluSq SINE Alu 1 308 -5 3188 203 27 34 chrY 4655328 4655423 -46858161 + MER4D LTR ERV1 476 570 -333 4766 144 27 23 chrY 4655423 4656199 -46857385 + MER4E LTR ERV1 1 779 0 3188 203 27 34 chrY 4656199 4656535 -46857049 + MER4D LTR ERV1 570 903 0 1168 169 41 9 chrY 4656711 4656930 -46856654 - MER41C LTR ERV1 0 554 329 1276 182 37 21 chrY 4656994 4657290 -46856294 + LTR10B LTR ERV1 306 547 0 1795 241 97 65 chrY 4657420 4658131 -46855453 + HERV17 LTR ERV1 405 1138 -6647 5675 268 23 28 chrY 4658193 4660136 -46853448 + HERV17 LTR ERV1 937 3284 -3963 584 248 0 0 chrY 4660136 4660249 -46853335 + HERV17 LTR ERV1 1062 1174 -7452 6670 28 1 11 chrY 4660253 4661040 -46852544 - L1PA3 LINE L1 -2 6153 5375 3812 48 15 1 chrY 4661040 4661557 -46852027 + L1M LINE L1 4863 5387 -796 7546 280 50 60 chrY 4661557 4665257 -46848327 + HERV17 LTR ERV1 2985 6649 0 1214 174 53 24 chrY 4665339 4665632 -46847952 + LTR10B LTR ERV1 306 547 0 * 1845 180 56 3 chrY 4665632 4665967 -46847617 - MER41C LTR ERV1 -201 353 1 2948 159 20 70 chrY 4666019 4666158 -46847426 - MER1A DNA MER1_type -2173 527 383 2190 141 0 3 chrY 4666158 4666471 -46847113 - AluSp SINE Alu -1 312 1 2948 159 20 70 chrY 4666471 4666819 -46846765 - MER1A DNA MER1_type -2317 383 69 2909 13 0 0 chrY 4666819 4667137 -46846447 - AluYb8 SINE Alu 0 318 1 2948 159 20 70 chrY 4667137 4667203 -46846381 - MER1A DNA MER1_type -2631 69 1 467 179 0 0 chrY 4667582 4667666 -46845918 - MER4B LTR ERV1 -163 447 364 23 0 0 0 chrY 4667678 4667701 -46845883 + AT_rich Low_complexity Low_complexity 1 23 0 302 248 50 0 chrY 4667703 4667804 -46845780 + CT-rich Low_complexity Low_complexity 3 108 0 375 182 23 45 chrY 4667825 4668001 -46845583 + CT-rich Low_complexity Low_complexity 3 174 0 1470 186 65 4 chrY 4668601 4668876 -46844708 - AluSx SINE Alu -19 293 2 236 302 50 36 chrY 4668883 4669022 -46844562 + LTR16C LTR ERVL 349 489 -2 2784 106 5 13 chrY 4669268 4669646 -46843938 + THE1C LTR MaLR 1 375 0 252 375 0 32 chrY 4669701 4669917 -46843667 + L1P LINE L1 4884 5092 -1054 293 307 58 61 chrY 4670121 4670466 -46843118 + L1ME LINE L1 5317 5660 -502 555 302 65 42 chrY 4670804 4671112 -46842472 + L2 LINE L2 2995 3309 -4 1369 149 0 9 chrY 4671364 4671623 -46841961 - AluSg/x SINE Alu 0 327 71 13787 135 11 23 chrY 4671623 4674252 -46839332 + L1P3 LINE L1 671 3284 -3177 586 126 29 58 chrY 4674452 4674555 -46839029 + AluS SINE Alu 1 100 -212 698 264 44 0 chrY 4674967 4675149 -46838435 - MER20 DNA MER1_type 0 219 30 2439 139 25 5 chrY 4675960 4676328 -46837256 - THE1C LTR MaLR 0 375 1 2011 121 55 0 chrY 4677500 4677789 -46835795 - AluSx SINE Alu -4 308 4 2013 187 19 8 chrY 4677924 4678283 -46835301 - MLT1A1 LTR MaLR -2 363 1 2012 164 0 0 chrY 4678695 4679011 -46834573 - AluSx SINE Alu 0 316 1 245 29 29 0 chrY 4679345 4679379 -46834205 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1802 150 0 33 chrY 4680592 4680899 -46832685 + AluJo SINE Alu 13 309 -3 993 219 24 5 chrY 4681624 4681834 -46831750 + AluJb SINE Alu 73 286 -26 341 236 19 19 chrY 4681834 4681991 -46831593 + (TA)n Simple_repeat Simple_repeat 2 158 0 293 231 7 0 chrY 4682012 4682159 -46831425 + (TA)n Simple_repeat Simple_repeat 1 148 0 21 0 0 0 chrY 4682207 4682228 -46831356 + AT_rich Low_complexity Low_complexity 1 21 0 407 108 0 83 chrY 4684211 4684368 -46829216 + (TA)n Simple_repeat Simple_repeat 2 145 0 1308 180 47 77 chrY 4684385 4684507 -46829077 + AluJo SINE Alu 1 125 -187 1937 156 0 10 chrY 4684507 4684814 -46828770 - AluSg SINE Alu -6 304 1 1308 180 47 77 chrY 4684814 4684991 -46828593 + AluJo SINE Alu 125 291 -21 509 174 0 31 chrY 4685163 4685261 -46828323 + L1PB4 LINE L1 6058 6152 -4 668 224 85 13 chrY 4685758 4685780 -46827804 - MLT1A1 LTR MaLR 0 390 371 2277 134 64 0 chrY 4685780 4686122 -46827462 - THE1B LTR MaLR 0 364 1 668 224 85 13 chrY 4686122 4686297 -46827287 - MLT1A1 LTR MaLR -19 371 178 345 82 0 0 chrY 4686297 4686346 -46827238 + (GA)n Simple_repeat Simple_repeat 1 49 0 1019 250 51 46 chrY 4686374 4686745 -46826839 + MLT2B1 LTR ERVL 3 428 -92 708 178 59 15 chrY 4686745 4686880 -46826704 - AluJo SINE Alu -49 263 123 300 274 118 0 chrY 4686929 4687031 -46826553 + L2 LINE L2 3197 3310 -3 296 277 42 25 chrY 4687317 4687436 -46826148 - MLT1H LTR MaLR 0 549 429 * 484 236 18 0 chrY 4687431 4687541 -46826043 + MER20 DNA MER1_type 90 201 -18 237 152 22 0 chrY 4687597 4687643 -46825941 + T-rich Low_complexity Low_complexity 3 49 0 568 173 19 10 chrY 4687643 4687747 -46825837 - U6 snRNA snRNA -2 105 1 427 312 27 25 chrY 4687972 4688196 -46825388 - MLT1H LTR MaLR -3 548 321 651 208 92 82 chrY 4688218 4688521 -46825063 + MLT1H1 LTR MaLR 242 547 -8 191 222 93 0 chrY 4689766 4689820 -46823764 - L2 LINE L2 0 3313 3255 500 126 29 46 chrY 4690280 4690455 -46823129 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 343 187 23 41 chrY 4690505 4690676 -46822908 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 1419 138 14 0 chrY 4690854 4691071 -46822513 + L1MA7 LINE L1 5682 5901 -390 1465 48 4 83 chrY 4691071 4691301 -46822283 - LTR66 LTR ERVL 0 610 399 255 0 86 74 chrY 4691311 4691392 -46822192 + (TA)n Simple_repeat Simple_repeat 2 83 0 2610 107 85 17 chrY 4691399 4691810 -46821774 - LTR66 LTR ERVL -168 442 4 672 226 45 6 chrY 4691868 4692045 -46821539 - MER20 DNA MER1_type -6 213 30 623 259 0 0 chrY 4692187 4692318 -46821266 + FLAM_A SINE Alu 1 131 -2 1406 185 83 4 chrY 4692321 4692597 -46820987 + AluJb SINE Alu 1 298 -14 7411 161 25 10 chrY 4692597 4693850 -46819734 + L1PA5 LINE L1 2 1274 -4872 * 20523 66 3 1 chrY 4693841 4698399 -46815185 + L1PA5 LINE L1 1490 6151 -3 3954 148 21 14 chrY 4698541 4699170 -46814414 + MER41B LTR ERV1 1 633 -2 1526 184 0 53 chrY 4699578 4699771 -46813813 - AluJo SINE Alu -9 303 132 2069 118 0 39 chrY 4699771 4700077 -46813507 + AluY SINE Alu 5 298 -13 1526 184 0 53 chrY 4700077 4700203 -46813381 - AluJo SINE Alu -180 132 1 1875 194 20 17 chrY 4700212 4700615 -46812969 - L1MA3 LINE L1 0 6305 5902 1995 141 35 55 chrY 4700638 4700857 -46812727 - L1PB3 LINE L1 0 6154 5943 1797 168 0 3 chrY 4700857 4701143 -46812441 - AluJb SINE Alu -23 289 5 1995 141 35 55 chrY 4701143 4701271 -46812313 - L1PB3 LINE L1 -211 5943 5814 756 226 83 6 chrY 4701298 4701479 -46812105 + MER20 DNA MER1_type 25 219 0 1693 173 53 0 chrY 4701484 4701767 -46811817 + AluSq SINE Alu 1 298 -15 1520 193 48 34 chrY 4701958 4702090 -46811494 - L1MA9 LINE L1 0 6312 6183 1971 145 7 3 chrY 4702090 4702387 -46811197 - AluSq SINE Alu -15 298 1 1520 193 48 34 chrY 4702387 4702612 -46810972 - L1MA9 LINE L1 -129 6183 5950 * 1731 188 3 87 chrY 4702609 4703145 -46810439 + L1MA9 LINE L1 4926 5419 -805 2166 137 0 13 chrY 4703145 4703460 -46810124 + AluSx SINE Alu 2 312 0 1731 188 3 87 chrY 4703460 4703519 -46810065 + L1MA9 LINE L1 5419 5481 -743 412 240 29 0 chrY 4703859 4703963 -46809621 + L1MA9 LINE L1 6019 6125 -187 * 516 116 0 23 chrY 4703951 4704037 -46809547 + L1PB1 LINE L1 5708 5791 -360 207 0 0 0 chrY 4704042 4704065 -46809519 + (GA)n Simple_repeat Simple_repeat 2 24 0 739 152 0 0 chrY 4704066 4704171 -46809413 - AluSq/x SINE Alu -201 111 7 2503 133 3 3 chrY 4704176 4704544 -46809040 + L1PB1 LINE L1 5782 6149 -2 570 257 22 28 chrY 4704574 4704753 -46808831 + L1MA9 LINE L1 6097 6274 -38 1617 184 13 25 chrY 4704776 4705092 -46808492 + AluJo SINE Alu 1 312 0 207 0 0 0 chrY 4705819 4705842 -46807742 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3075 72 2 25 chrY 4705981 4706384 -46807200 - L1PA10 LINE L1 -294 5874 5481 1350 98 62 0 chrY 4706389 4706582 -46807002 + L1PA10 LINE L1 5960 6164 -4 2422 58 0 7 chrY 4706819 4707113 -46806471 - AluY SINE Alu -17 294 3 189 0 0 0 chrY 4707119 4707140 -46806444 + (T)n Simple_repeat Simple_repeat 1 21 0 1699 233 6 0 chrY 4707140 4707496 -46806088 + L1MB5 LINE L1 5816 6173 -1 1765 160 4 4 chrY 4707503 4707805 -46805779 + AluSx SINE Alu 1 302 0 1181 88 0 11 chrY 4707883 4708065 -46805519 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 685 157 7 14 chrY 4708070 4708210 -46805374 + CT-rich Low_complexity Low_complexity 4 142 0 552 126 0 0 chrY 4709122 4709209 -46804375 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 1713 177 17 20 chrY 4709670 4709970 -46803614 - AluJo SINE Alu -6 306 8 1899 177 0 3 chrY 4709988 4710287 -46803297 - AluSx SINE Alu -14 298 1 842 167 20 13 chrY 4710292 4710442 -46803142 - MLT1A1 LTR MaLR -214 151 1 1564 190 4 14 chrY 4711051 4711330 -46802254 - AluJb SINE Alu -24 288 13 2618 134 14 0 chrY 4712072 4712430 -46801154 + THE1B LTR MaLR 1 363 -1 804 249 31 52 chrY 4712817 4713046 -46800538 - MER58A DNA MER1_type 0 224 1 2089 125 0 0 chrY 4713087 4713395 -46800189 + AluSc SINE Alu 1 308 0 2167 170 40 5 chrY 4713551 4713928 -46799656 + MLT1B LTR MaLR 1 390 0 423 0 0 0 chrY 4715038 4715085 -46798499 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1848 158 29 0 chrY 4715087 4715366 -46798218 - AluSx SINE Alu -24 288 2 1543 204 3 13 chrY 4716003 4716307 -46797277 + AluJo SINE Alu 1 301 -11 201 94 0 0 chrY 4716380 4716412 -46797172 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 897 174 0 43 chrY 4716412 4716499 -46797085 - AluJo SINE Alu -28 284 203 4038 70 63 4 chrY 4716499 4717026 -46796558 + LTR6B LTR ERV1 1 558 0 897 174 0 43 chrY 4717026 4717091 -46796493 - AluJo SINE Alu -109 203 137 863 207 61 15 chrY 4717160 4717358 -46796226 + MLT1D LTR MaLR 29 235 -270 372 148 11 66 chrY 4717358 4717541 -46796043 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 503 179 0 13 chrY 4717598 4717749 -46795835 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 241 200 52 52 chrY 4717756 4717871 -46795713 + MLT1D LTR MaLR 180 294 -211 1133 90 26 0 chrY 4717871 4718026 -46795558 + AluY SINE Alu 136 294 -17 1004 151 39 11 chrY 4718041 4718220 -46795364 - LTR43 LTR ERV1 -388 214 31 183 204 0 0 chrY 4718875 4718924 -46794660 + C-rich Low_complexity Low_complexity 4 52 0 584 162 30 0 chrY 4718924 4719023 -46794561 - FRAM SINE Alu -5 171 70 1838 145 37 0 chrY 4719072 4719369 -46794215 + Tigger3(Golem) DNA MER2_type 2721 3028 -1 1868 209 37 0 chrY 4719384 4719734 -46793850 + MLT1A1 LTR MaLR 3 365 0 378 221 0 13 chrY 4720782 4720859 -46792725 - LTR45B LTR ERV1 -390 99 24 29 37 0 19 chrY 4721217 4721251 -46792333 + AT_rich Low_complexity Low_complexity 1 35 -18 927 150 0 0 chrY 4721251 4721384 -46792200 - AluJo SINE Alu -169 133 1 29 37 0 19 chrY 4721384 4721403 -46792181 + AT_rich Low_complexity Low_complexity 35 53 0 306 315 0 11 chrY 4721581 4721673 -46791911 - L1MC4 LINE L1 -1335 6707 6617 2183 172 36 90 chrY 4721673 4722174 -46791410 + LTR45B LTR ERV1 6 479 -10 22 0 0 0 chrY 4722791 4722813 -46790771 + AT_rich Low_complexity Low_complexity 1 22 0 280 245 19 0 chrY 4723707 4723813 -46789771 + CT-rich Low_complexity Low_complexity 1 108 0 1365 219 28 15 chrY 4724135 4724460 -46789124 + L1MC3 LINE L1 7295 7623 -162 399 163 0 0 chrY 4724461 4724541 -46789043 + (ATG)n Simple_repeat Simple_repeat 1 80 0 * 918 126 6 27 chrY 4724539 4724722 -46788862 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 278 173 62 37 chrY 4724956 4725037 -46788547 - MLT1J LTR MaLR -358 153 71 964 202 66 141 chrY 4725351 4725777 -46787807 + MSTD LTR MaLR 1 394 -2 195 42 0 0 chrY 4727052 4727076 -46786508 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 979 175 32 5 chrY 4728041 4728230 -46785354 + L1PA16 LINE L1 5964 6157 -9 370 261 39 15 chrY 4728282 4728412 -46785172 + MLT1D LTR MaLR 6 138 -367 440 308 15 0 chrY 4728771 4728901 -46784683 + MLT1D LTR MaLR 302 433 -72 1856 162 0 14 chrY 4729057 4729353 -46784231 + AluJo SINE Alu 3 294 -18 1299 203 11 39 chrY 4729509 4729790 -46783794 + AluJo SINE Alu 1 273 -39 210 37 0 0 chrY 4729790 4729817 -46783767 + (TC)n Simple_repeat Simple_repeat 1 27 0 298 280 15 23 chrY 4730667 4730799 -46782785 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 349 117 51 36 chrY 4730810 4730947 -46782637 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 451 130 56 25 chrY 4730959 4731121 -46782463 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 2634 129 4 75 chrY 4731934 4732017 -46781567 - Tigger2a DNA MER2_type -2275 433 346 1710 127 70 0 chrY 4732017 4732276 -46781308 + AluSq SINE Alu 22 298 -15 2634 129 4 75 chrY 4732276 4732657 -46780927 - Tigger2a DNA MER2_type -2362 346 2 225 0 0 0 chrY 4733016 4733041 -46780543 + (TG)n Simple_repeat Simple_repeat 2 26 0 668 106 43 6 chrY 4733125 4733286 -46780298 + (TAGA)n Simple_repeat Simple_repeat 1 167 0 40 49 0 0 chrY 4733887 4733948 -46779636 + AT_rich Low_complexity Low_complexity 1 61 0 1115 142 0 0 chrY 4733948 4734110 -46779474 - AluSq SINE Alu -17 296 135 28 109 0 0 chrY 4734395 4734514 -46779070 + AT_rich Low_complexity Low_complexity 1 119 0 184 86 69 17 chrY 4734522 4734580 -46779004 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 22 0 0 0 chrY 4734594 4734616 -46778968 + AT_rich Low_complexity Low_complexity 1 22 0 1380 113 9 14 chrY 4734616 4734838 -46778746 - Tigger2 DNA MER2_type -146 2572 2352 335 141 86 31 chrY 4734875 4735038 -46778546 + (TA)n Simple_repeat Simple_repeat 1 172 0 382 188 28 61 chrY 4735044 4735225 -46778359 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 226 207 73 24 chrY 4735251 4735333 -46778251 + HSMAR1 DNA Mariner 1 86 -1201 226 218 61 14 chrY 4735333 4735480 -46778104 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 217 318 39 39 chrY 4735608 4735762 -46777822 + L2 LINE L2 2633 2786 -528 1451 159 28 0 chrY 4736207 4736459 -46777125 - L1MA4A LINE L1 0 6303 6045 3498 108 4 16 chrY 4736617 4737119 -46776465 + MER1A DNA MER1_type 34 529 0 1945 163 3 0 chrY 4737505 4737812 -46775772 - AluSx SINE Alu -4 308 1 1301 148 13 0 chrY 4738200 4738429 -46775155 - MLT1B LTR MaLR 0 390 159 1152 157 10 12 chrY 4738430 4738647 -46774937 - MLT1B LTR MaLR 0 467 175 10197 89 8 0 chrY 4738783 4740868 -46772716 - L1PA5 LINE L1 -4 6150 4041 24121 107 14 14 chrY 4740868 4744552 -46769032 - L1P LINE L1 -1678 4468 11 6836 99 2 62 chrY 4744815 4746058 -46767526 - L1PA7 LINE L1 -6 6148 4932 1350 221 78 7 chrY 4746245 4746410 -46767174 - AluJo SINE Alu 0 302 107 189 0 0 0 chrY 4746410 4746431 -46767153 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1350 221 78 7 chrY 4746431 4746546 -46767038 - AluJo SINE Alu -195 107 2 1053 166 6 11 chrY 4747256 4747437 -46766147 + AluJo SINE Alu 1 180 -132 2624 141 9 19 chrY 4747655 4748075 -46765509 + L1PB4 LINE L1 5739 6154 -2 224 342 0 0 chrY 4748341 4748417 -46765167 - MER5A DNA MER1_type -84 105 30 281 215 11 65 chrY 4748453 4748546 -46765038 - MER3 DNA MER1_type -1 208 121 603 209 72 0 chrY 4748573 4748726 -46764858 - MER3 DNA MER1_type -44 165 2 474 270 106 86 chrY 4749268 4749675 -46763909 - MLT1J2 LTR MaLR -11 439 25 680 335 48 15 chrY 4749710 4750091 -46763493 + L1ME3A LINE L1 5497 5893 -277 2035 167 21 11 chrY 4750731 4751103 -46762481 + L1MA7 LINE L1 5841 6216 -75 1932 155 0 0 chrY 4751104 4751394 -46762190 + AluSx SINE Alu 1 290 -22 813 177 0 43 chrY 4751405 4751591 -46761993 + L1MA7 LINE L1 6114 6291 0 592 200 33 16 chrY 4751747 4751954 -46761630 - MLT2B1 LTR ERVL -95 425 269 532 238 42 8 chrY 4751932 4752107 -46761477 - MLT2B1 LTR ERVL -123 397 267 * 602 219 21 141 chrY 4752082 4752324 -46761260 - MLT2B1 LTR ERVL -130 390 178 955 51 0 0 chrY 4752339 4752457 -46761127 - L1P5 LINE L1 -471 5680 5563 619 215 25 19 chrY 4752532 4752690 -46760894 - MLT2D LTR ERVL -255 159 1 220 231 39 0 chrY 4752690 4752742 -46760842 + (CATG)n Simple_repeat Simple_repeat 2 55 0 3527 154 2 9 chrY 4754419 4754950 -46758634 - MER1A DNA MER1_type 0 527 1 664 272 85 13 chrY 4754980 4755204 -46758380 + MLT1C LTR MaLR 218 457 -10 201 74 0 0 chrY 4755204 4755231 -46758353 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 393 203 16 8 chrY 4756015 4756138 -46757446 + CT-rich Low_complexity Low_complexity 3 126 0 690 143 9 9 chrY 4756150 4756255 -46757329 - AluSq/x SINE Alu -205 107 3 606 23 34 0 chrY 4756275 4756363 -46757221 + (TA)n Simple_repeat Simple_repeat 1 91 0 187 118 0 39 chrY 4756397 4756448 -46757136 + (TAA)n Simple_repeat Simple_repeat 2 50 0 * 274 182 34 23 chrY 4756442 4756618 -46756966 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 293 190 34 62 chrY 4756653 4756832 -46756752 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 2063 152 3 0 chrY 4756834 4757143 -46756441 + AluSx SINE Alu 1 310 -2 1856 206 33 23 chrY 4757158 4757585 -46755999 + L1MA8 LINE L1 5836 6266 -25 1965 151 28 0 chrY 4757723 4758014 -46755570 + AluSx SINE Alu 1 299 -13 321 300 132 21 chrY 4758212 4758455 -46755129 - MER97b DNA MER1_type? -735 318 49 233 232 0 0 chrY 4758506 4758562 -46755022 + T-rich Low_complexity Low_complexity 1 56 0 189 0 0 0 chrY 4758596 4758617 -46754967 + (TA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chrY 4758617 4758638 -46754946 + AT_rich Low_complexity Low_complexity 1 21 0 1946 171 0 0 chrY 4758638 4758947 -46754637 + AluSx SINE Alu 1 309 -3 1621 135 0 0 chrY 4759000 4759230 -46754354 + AluSg/x SINE Alu 69 298 -14 515 157 45 0 chrY 4759230 4759319 -46754265 - L1MA5A LINE L1 -12 6285 6193 1704 166 35 7 chrY 4759588 4759872 -46753712 + AluJo SINE Alu 1 292 -20 765 179 22 22 chrY 4760128 4760262 -46753322 + AluJo SINE Alu 3 136 -176 243 0 0 0 chrY 4760915 4760942 -46752642 + (T)n Simple_repeat Simple_repeat 1 27 0 2100 177 111 2 chrY 4762806 4763219 -46750365 + L1PA16 LINE L1 5708 6165 -1 203 370 4 0 chrY 4763508 4763595 -46749989 - MIR SINE MIR -74 134 45 595 181 23 12 chrY 4763695 4763866 -46749718 + CT-rich Low_complexity Low_complexity 3 175 0 1541 215 3 14 chrY 4763887 4764175 -46749409 - AluJo SINE Alu -15 287 3 894 194 6 0 chrY 4764180 4764345 -46749239 - L1M3 LINE L1 -554 5780 5615 3393 162 91 57 chrY 4764443 4765146 -46748438 - LTR8A LTR ERV1 0 727 1 1400 177 113 78 chrY 4765178 4765613 -46747971 + LTR7 LTR ERV1 1 450 0 14898 184 78 88 chrY 4765613 4769784 -46743800 + HERVH LTR ERV1 1 4125 -3588 2438 40 40 0 chrY 4769784 4770081 -46743503 - AluY SINE Alu -2 309 1 14898 184 78 88 chrY 4770081 4770504 -46743080 + HERVH LTR ERV1 4125 4551 -3162 1458 164 19 0 chrY 4770495 4770751 -46742833 + HERVH LTR ERV1 5756 6016 -1697 * 3869 106 5 5 chrY 4770744 4771301 -46742283 + HERVH LTR ERV1 7157 7713 0 1457 171 117 61 chrY 4771301 4771727 -46741857 + LTR7 LTR ERV1 1 450 0 1756 153 0 38 chrY 4771793 4772107 -46741477 - AluJo SINE Alu 0 312 11 21 36 0 0 chrY 4772627 4772655 -46740929 + AT_rich Low_complexity Low_complexity 1 28 0 226 219 195 49 chrY 4772806 4772888 -46740696 - MIR3 SINE MIR -5 203 110 1890 166 0 3 chrY 4772940 4773242 -46740342 - AluJb SINE Alu -11 301 1 2252 141 55 66 chrY 4773755 4773836 -46739748 + MER4E LTR ERV1 1 81 -698 2021 137 17 0 chrY 4773836 4774129 -46739455 + AluSx SINE Alu 1 298 -14 2252 141 55 66 chrY 4774129 4774668 -46738916 + MER4E LTR ERV1 81 779 0 11274 113 7 5 chrY 4774811 4776486 -46737098 - L1PA7 LINE L1 -1274 4872 3195 3198 118 27 1 chrY 4776485 4777102 -46736482 + L1PA7 LINE L1 4854 5489 -665 * 1591 112 21 156 chrY 4777103 4777207 -46736377 + AluYb8 SINE Alu 1 117 -201 4001 100 0 4 chrY 4777207 4777716 -46735868 + MER9 LTR ERVK 1 507 -4 1591 112 21 156 chrY 4777716 4777951 -46735633 + AluYb8 SINE Alu 117 294 -24 5029 79 39 17 chrY 4777951 4778612 -46734972 + L1PA7 LINE L1 5476 6151 -3 261 0 0 0 chrY 4778865 4778894 -46734690 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2145 122 3 0 chrY 4778925 4779219 -46734365 + AluY SINE Alu 1 295 -16 363 154 0 0 chrY 4780088 4780153 -46733431 - L1MD2 LINE L1 -7 6352 6288 1661 163 7 7 chrY 4780153 4780423 -46733161 + AluSq SINE Alu 38 307 -6 937 138 28 44 chrY 4780440 4780504 -46733080 - L1MD1 LINE L1 -55 6187 6123 4568 120 16 2 chrY 4780504 4781130 -46732454 - MER41B LTR ERV1 0 635 1 937 138 28 44 chrY 4781130 4781246 -46732338 - L1MD1 LINE L1 -119 6123 6010 1297 225 77 20 chrY 4781390 4781430 -46732154 - MLT1A1 LTR MaLR 0 365 329 2281 147 30 22 chrY 4781430 4781791 -46731793 + THE1B LTR MaLR 1 364 0 1297 225 77 20 chrY 4781791 4782048 -46731536 - MLT1A1 LTR MaLR -36 329 51 2176 160 47 32 chrY 4782048 4782585 -46730999 - MLT2A2 LTR ERVL 0 554 1 302 185 62 15 chrY 4782585 4782641 -46730943 - MLT1A1 LTR MaLR -306 59 1 449 238 38 0 chrY 4783804 4783909 -46729675 - L1MA4A LINE L1 -259 6044 5936 743 151 0 24 chrY 4783911 4784062 -46729522 - AluJb SINE Alu 0 337 190 626 179 104 8 chrY 4784122 4784206 -46729378 + L1MA4A LINE L1 6084 6187 -116 1785 157 22 29 chrY 4784206 4784519 -46729065 + AluJo SINE Alu 1 311 -1 626 179 104 8 chrY 4784519 4784568 -46729016 + L1MA4A LINE L1 6187 6230 -73 1049 245 0 12 chrY 4784896 4785149 -46728435 + L1MA8 LINE L1 6042 6291 0 293 297 13 0 chrY 4785205 4785509 -46728075 + (TA)n Simple_repeat Simple_repeat 1 308 0 260 268 0 7 chrY 4785528 4785666 -46727918 + (TA)n Simple_repeat Simple_repeat 2 138 0 257 347 0 0 chrY 4785677 4785775 -46727809 + (TA)n Simple_repeat Simple_repeat 2 99 0 270 43 0 130 chrY 4786419 4786432 -46727152 + L1P4 LINE L1 5729 5742 -432 2038 157 13 46 chrY 4786432 4786618 -46726966 + THE1C LTR MaLR 1 169 -206 1916 142 3 3 chrY 4786618 4786913 -46726671 + AluSq SINE Alu 1 295 -18 2038 157 13 46 chrY 4786913 4787114 -46726470 + THE1C LTR MaLR 169 375 0 270 43 0 130 chrY 4787114 4787146 -46726438 + L1P4 LINE L1 5742 5768 -406 2119 112 78 6 chrY 4787148 4787470 -46726114 + L1PA13 LINE L1 5819 6163 0 894 100 0 0 chrY 4787587 4787707 -46725877 - AluSg/x SINE Alu -3 306 187 1384 176 4 12 chrY 4788254 4788498 -46725086 + AluJb SINE Alu 68 309 -3 26 30 0 0 chrY 4788552 4788585 -46724999 + AT_rich Low_complexity Low_complexity 1 33 0 375 23 0 0 chrY 4788736 4788780 -46724804 + (TG)n Simple_repeat Simple_repeat 1 44 0 1803 158 54 6 chrY 4788862 4789197 -46724387 + MLT1A1 LTR MaLR 15 365 0 12382 32 1 1 chrY 4789348 4790825 -46722759 - L1PA3 LINE L1 -1845 4301 2825 3826 32 7 0 chrY 4790822 4791285 -46722299 + L1PA3 LINE L1 4317 4782 -1364 * 6080 22 5 1 chrY 4791285 4791955 -46721629 + L1PA3 LINE L1 5483 6155 0 198 0 0 0 chrY 4793116 4793138 -46720446 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 707 100 158 0 chrY 4794606 4794726 -46718858 - MER85 DNA T2_type 0 139 1 1373 183 0 0 chrY 4795068 4795319 -46718265 - L1MA4 LINE L1 -11 6289 6039 751 260 39 0 chrY 4795639 4795820 -46717764 + L1MB5 LINE L1 5950 6137 -37 2015 206 24 81 chrY 4795826 4796321 -46717263 + MLT1C LTR MaLR 1 467 0 667 285 80 75 chrY 4796385 4796837 -46716747 - L2 LINE L2 -889 2425 1972 327 25 0 0 chrY 4797105 4797145 -46716439 + (GA)n Simple_repeat Simple_repeat 1 40 0 764 240 29 0 chrY 4797171 4797342 -46716242 - MSTD LTR MaLR -218 178 3 2239 87 22 26 chrY 4797516 4797828 -46715756 - AluY SINE Alu 0 311 1 1720 204 38 0 chrY 4798477 4798796 -46714788 - MER2 DNA MER2_type -14 331 1 200 267 13 53 chrY 4799155 4799230 -46714354 - MIR SINE MIR -115 147 76 1463 302 93 24 chrY 4799324 4799874 -46713710 - MLT1E LTR MaLR -2 591 4 221 0 0 33 chrY 4799907 4799937 -46713647 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 832 200 38 5 chrY 4800736 4800921 -46712663 - MER20 DNA MER1_type -26 193 3 369 110 71 24 chrY 4800927 4801054 -46712530 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 493 126 58 27 chrY 4801071 4801437 -46712147 + (TAGA)n Simple_repeat Simple_repeat 1 377 0 497 107 40 27 chrY 4801459 4801608 -46711976 + (TAGA)n Simple_repeat Simple_repeat 1 151 0 894 174 67 0 chrY 4801625 4801803 -46711781 - MER20 DNA MER1_type 0 219 30 1254 214 80 48 chrY 4802422 4802773 -46710811 + MLT1A1 LTR MaLR 1 362 -3 3291 209 20 50 chrY 4802986 4803558 -46710026 + L1MA9 LINE L1 5459 5999 -313 3303 152 17 26 chrY 4803558 4804090 -46709494 - MER1A DNA MER1_type 0 527 1 3291 209 20 50 chrY 4804090 4804365 -46709219 + L1MA9 LINE L1 5999 6281 -31 439 223 58 19 chrY 4804519 4804622 -46708962 + L2 LINE L2 3152 3258 -14 1418 270 15 28 chrY 4805413 4805805 -46707779 + L1MB5 LINE L1 5748 6117 -66 1878 168 0 0 chrY 4805805 4806090 -46707494 - AluSx SINE Alu -21 291 7 1418 270 15 28 chrY 4806090 4806155 -46707429 + L1MB5 LINE L1 6117 6181 -2 2227 109 3 0 chrY 4806166 4806468 -46707116 + AluY SINE Alu 1 303 -8 976 178 11 83 chrY 4806788 4807052 -46706532 - MER66A LTR ERV1 -2 476 232 791 211 206 10 chrY 4807169 4807368 -46706216 - MER66B LTR ERV1 -240 246 9 2045 113 0 10 chrY 4807691 4807982 -46705602 - MER1A DNA MER1_type 0 529 242 237 208 0 0 chrY 4808098 4808151 -46705433 - LTR66 LTR ERVL -164 446 394 233 132 38 19 chrY 4808151 4808204 -46705380 + (TA)n Simple_repeat Simple_repeat 2 55 0 1565 185 0 0 chrY 4809449 4809730 -46703854 - L1 LINE L1 -1136 5010 4730 253 267 27 27 chrY 4809806 4809881 -46703703 - L2 LINE L2 0 3272 3198 2524 27 40 0 chrY 4810556 4810852 -46702732 + AluY SINE Alu 1 308 -3 714 98 40 29 chrY 4812046 4812219 -46701365 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 853 223 30 128 chrY 4812759 4813076 -46700508 - MLT1A2 LTR MaLR -5 370 24 2855 106 3 3 chrY 4813076 4813436 -46700148 - THE1B LTR MaLR -1 363 4 853 223 30 128 chrY 4813436 4813461 -46700123 - MLT1A2 LTR MaLR -351 24 94 2120 144 101 29 chrY 4813461 4813837 -46699747 + MER57A LTR ERV1 1 403 0 853 223 30 128 chrY 4813837 4813919 -46699665 - MLT1A2 LTR MaLR -280 95 7 186 103 0 0 chrY 4814025 4814054 -46699530 + (A)n Simple_repeat Simple_repeat 1 29 0 225 94 0 0 chrY 4814096 4814128 -46699456 + (T)n Simple_repeat Simple_repeat 1 32 0 2430 74 20 0 chrY 4814346 4814643 -46698941 + AluY SINE Alu 1 303 -8 438 75 0 0 chrY 4815229 4815282 -46698302 - Alu SINE Alu -260 53 1 469 251 2 8 chrY 4815282 4815414 -46698170 - L1M4 LINE L1 -1074 5072 4941 481 288 24 0 chrY 4815573 4815743 -46697841 + (TATG)n Simple_repeat Simple_repeat 1 174 0 411 366 6 0 chrY 4815693 4815868 -46697716 + (TG)n Simple_repeat Simple_repeat 1 176 0 * 248 244 12 35 chrY 4815886 4816058 -46697526 + (TATG)n Simple_repeat Simple_repeat 4 171 0 423 305 0 13 chrY 4816070 4816224 -46697360 + (TATG)n Simple_repeat Simple_repeat 4 155 0 2483 135 17 11 chrY 4816922 4817284 -46696300 + THE1B LTR MaLR 1 364 0 200 108 0 27 chrY 4818433 4818470 -46695114 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 728 198 37 119 chrY 4818519 4818688 -46694896 - MLT2B2 LTR ERVL 0 515 370 1962 162 35 54 chrY 4818688 4819058 -46694526 + THE1B LTR MaLR 2 364 0 728 198 37 119 chrY 4819058 4819131 -46694453 - MLT2B2 LTR ERVL -145 370 293 7936 171 12 34 chrY 4819308 4820579 -46693005 + L1P3 LINE L1 2 1253 -5208 210 91 0 0 chrY 4820579 4820612 -46692972 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7936 171 12 34 chrY 4820612 4821739 -46691845 + L1P3 LINE L1 1253 2403 -4058 334 157 0 0 chrY 4821747 4821798 -46691786 - L1MA8 LINE L1 -423 5868 5818 247 83 28 0 chrY 4821820 4821856 -46691728 - MER75 DNA T2_type -4 500 464 587 140 40 0 chrY 4821887 4821987 -46691597 - L1MA8 LINE L1 -496 5816 5713 311 315 18 0 chrY 4821989 4822100 -46691484 - MER5A DNA MER1_type -74 115 3 481 333 0 0 chrY 4822631 4822811 -46690773 + (CA)n Simple_repeat Simple_repeat 1 180 0 360 304 0 4 chrY 4822834 4823315 -46690269 + (CA)n Simple_repeat Simple_repeat 1 478 0 315 274 0 0 chrY 4823365 4823540 -46690044 + (CA)n Simple_repeat Simple_repeat 2 176 0 183 262 0 0 chrY 4823591 4823698 -46689886 + (CA)n Simple_repeat Simple_repeat 2 108 0 236 270 7 0 chrY 4823721 4823858 -46689726 + (CA)n Simple_repeat Simple_repeat 2 139 0 242 269 0 8 chrY 4823886 4824016 -46689568 + (CA)n Simple_repeat Simple_repeat 1 129 0 271 316 7 22 chrY 4824029 4824165 -46689419 + (CATATA)n Simple_repeat Simple_repeat 1 134 0 * 360 295 17 17 chrY 4824068 4824241 -46689343 + (CATA)n Simple_repeat Simple_repeat 4 176 0 222 232 27 0 chrY 4824258 4824370 -46689214 + (CA)n Simple_repeat Simple_repeat 2 116 0 4276 76 26 36 chrY 4826913 4827518 -46686066 + L1PB1 LINE L1 5550 6148 -3 845 182 123 13 chrY 4827977 4828131 -46685453 + AluJo SINE Alu 2 172 -140 1685 111 4 25 chrY 4828133 4828368 -46685216 - AluSq SINE Alu -83 230 1 351 0 0 0 chrY 4828792 4828831 -46684753 + (TG)n Simple_repeat Simple_repeat 1 39 0 2285 193 3 0 chrY 4828887 4829276 -46684308 - MLT1B LTR MaLR 0 390 1 5271 163 8 6 chrY 4829848 4830826 -46682758 + L1PA16 LINE L1 5170 6150 -16 2304 136 5 19 chrY 4831265 4831634 -46681950 - THE1B LTR MaLR 0 364 1 26 50 0 0 chrY 4831941 4831981 -46681603 + AT_rich Low_complexity Low_complexity 1 40 0 3595 121 8 25 chrY 4832445 4832517 -46681067 + L1PA14 LINE L1 5535 5607 -554 1752 171 0 17 chrY 4832517 4832845 -46680739 + AluSx SINE Alu 1 323 0 3595 121 8 25 chrY 4832845 4833377 -46680207 + L1PA14 LINE L1 5607 6130 -31 6205 90 9 0 chrY 4833383 4834250 -46679334 + L1PA6 LINE L1 5280 6154 0 204 270 157 78 chrY 4834350 4834554 -46679030 - MIR SINE MIR -10 252 33 195 42 0 0 chrY 4834595 4834619 -46678965 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 39144 47 23 1 chrY 4834645 4840662 -46672922 - L1PA3 LINE L1 -4 6151 1 1365 232 10 7 chrY 4840682 4840971 -46672613 - AluJb SINE Alu -22 290 1 559 188 72 68 chrY 4841354 4841561 -46672023 + MER3 DNA MER1_type 1 208 -1 2150 176 38 24 chrY 4841713 4842138 -46671446 + Tigger2a DNA MER2_type 1 431 -3 219 376 47 0 chrY 4842301 4842386 -46671198 + L2 LINE L2 3167 3255 -17 1003 120 0 22 chrY 4842403 4842586 -46670998 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 743 261 31 0 chrY 4842637 4842832 -46670752 + MLT2B1 LTR ERVL 1 201 -319 1429 104 0 0 chrY 4842837 4843048 -46670536 - L1P3 LINE L1 -4839 1622 1412 2245 282 42 55 chrY 4843613 4844746 -46668838 + L1M3de LINE L1 286 2051 -4602 1843 152 6 22 chrY 4844783 4845099 -46668485 + AluSx SINE Alu 1 311 -1 1406 270 97 70 chrY 4845140 4845941 -46667643 + L1M2b LINE L1 15 837 -6372 805 259 13 76 chrY 4845913 4846307 -46667277 + L1M2b LINE L1 1564 1932 -5277 * 338 318 148 47 chrY 4846320 4846704 -46666880 - L1MEc LINE L1 -5918 478 56 1322 178 73 11 chrY 4847138 4847413 -46666171 - AluSg SINE Alu -17 293 2 319 56 37 0 chrY 4847415 4847469 -46666115 + (TAAAAA)n Simple_repeat Simple_repeat 2 57 0 2121 89 19 29 chrY 4847472 4847786 -46665798 + AluY SINE Alu 1 311 0 2463 65 7 0 chrY 4847818 4848150 -46665434 - AluY SINE Alu 0 334 1 1410 270 87 11 chrY 4848378 4849000 -46664584 - LTR65 LTR ERV1 0 669 1 1329 228 7 17 chrY 4849586 4849880 -46663704 + AluSx SINE Alu 1 291 -21 22 35 0 0 chrY 4849880 4849909 -46663675 + AT_rich Low_complexity Low_complexity 1 29 0 805 207 0 30 chrY 4849941 4850110 -46663474 - FRAM SINE Alu -6 170 7 288 0 0 0 chrY 4850114 4850146 -46663438 + (TG)n Simple_repeat Simple_repeat 2 33 0 316 334 59 59 chrY 4850200 4850556 -46663028 - HAL1b LINE L1 -689 659 304 334 268 12 0 chrY 4850718 4850800 -46662784 + L2 LINE L2 3231 3313 0 2217 108 0 25 chrY 4853146 4853462 -46660122 + AluY SINE Alu 1 308 -3 185 348 51 44 chrY 4854043 4854201 -46659383 + MIR SINE MIR 48 206 -56 398 321 0 0 chrY 4854280 4854420 -46659164 - MIR SINE MIR -25 237 98 1032 254 13 30 chrY 4855313 4855612 -46657972 - MLT1E LTR MaLR -2 591 298 1459 221 3 24 chrY 4855787 4856081 -46657503 + AluJo SINE Alu 1 288 -24 243 326 68 14 chrY 4856103 4856250 -46657334 - L2 LINE L2 -2521 793 639 347 359 33 22 chrY 4856304 4856488 -46657096 - L2 LINE L2 -2835 479 294 341 141 49 82 chrY 4856704 4856888 -46656696 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 366 153 38 77 chrY 4856905 4857088 -46656496 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 366 153 38 77 chrY 4857105 4857288 -46656296 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 405 172 39 61 chrY 4857305 4857485 -46656099 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 575 294 34 21 chrY 4857496 4857734 -46655850 - MLT1E LTR MaLR -192 275 35 207 0 0 0 chrY 4857735 4857758 -46655826 + (T)n Simple_repeat Simple_repeat 1 23 0 2119 99 0 3 chrY 4858493 4858797 -46654787 - AluY SINE Alu -8 303 1 27 29 0 0 chrY 4858983 4859017 -46654567 + AT_rich Low_complexity Low_complexity 1 34 0 233 225 28 70 chrY 4859547 4859618 -46653966 + MIR3 SINE MIR 103 170 -38 2080 103 6 44 chrY 4859727 4860047 -46653537 + AluY SINE Alu 3 310 -1 25 0 0 0 chrY 4860365 4860390 -46653194 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chrY 4860602 4860631 -46652953 + AT_rich Low_complexity Low_complexity 1 29 0 1280 183 17 101 chrY 4861220 4861625 -46651959 + MLT1B LTR MaLR 1 371 -19 263 360 30 0 chrY 4862414 4862514 -46651070 + MIR SINE MIR 30 132 -130 439 273 30 8 chrY 4862677 4862809 -46650775 - MIR3 SINE MIR -8 200 66 1852 156 17 3 chrY 4863860 4864162 -46649422 - AluSp SINE Alu -7 306 1 313 353 90 64 chrY 4864548 4865015 -46648569 + L2 LINE L2 2831 3309 -4 1269 153 9 0 chrY 4865123 4865339 -46648245 - LTR19B LTR ERV1 0 580 363 3056 113 17 4 chrY 4865346 4865826 -46647758 - LTR15 LTR ERV1 -7 486 1 1952 147 34 0 chrY 4865826 4866180 -46647404 - LTR19B LTR ERV1 -214 366 1 1258 147 4 31 chrY 4866181 4866406 -46647178 - LTR19B-int LTR ERV1 -1 5585 5367 * 1420 186 66 77 chrY 4866402 4866643 -46646941 - LTR19B-int LTR ERV1 -332 5254 5012 464 48 0 0 chrY 4866643 4866706 -46646878 + AluY SINE Alu 243 305 -5 1420 186 66 77 chrY 4866706 4866945 -46646639 - LTR19B-int LTR ERV1 -574 5012 4718 * 5057 210 37 1 chrY 4866940 4868186 -46645398 - LTR19B-int LTR ERV1 -422 5507 3336 455 242 46 36 chrY 4868215 4868434 -46645150 - LTR19B-int LTR ERV1 -3091 2126 1906 1127 109 0 0 chrY 4868436 4868592 -46644992 + AluY SINE Alu 146 301 -10 4545 148 29 18 chrY 4869022 4869847 -46643737 - LTR19B-int LTR ERV1 -3624 1962 1129 3981 163 8 34 chrY 4869833 4870712 -46642872 - LTR19B-int LTR ERV1 -6786 933 1 * 1644 137 14 11 chrY 4870712 4870996 -46642588 - LTR19B LTR ERV1 0 580 296 2220 99 12 0 chrY 4870997 4871341 -46642243 - THE1-int LTR MaLR -1232 348 1 39 68 0 0 chrY 4871644 4871718 -46641866 + AT_rich Low_complexity Low_complexity 1 74 0 677 311 33 36 chrY 4872049 4872354 -46641230 - MLT1J LTR MaLR -105 406 103 2045 140 0 0 chrY 4874002 4874295 -46639289 + AluSp SINE Alu 1 293 -20 382 250 29 0 chrY 4875771 4875907 -46637677 - L1M4 LINE L1 -1539 4607 4468 10137 130 28 6 chrY 4876499 4879007 -46634577 - L1PA7 LINE L1 -8 6146 3596 1818 186 0 3 chrY 4879007 4879319 -46634265 - AluSx SINE Alu -1 311 1 1057 106 0 0 chrY 4879500 4879642 -46633942 + AluY SINE Alu 163 304 -7 1239 166 16 93 chrY 4879743 4880056 -46633528 + MER52C LTR ERV1 990 1278 0 36 53 0 0 chrY 4880223 4880280 -46633304 + AT_rich Low_complexity Low_complexity 1 57 0 214 331 91 0 chrY 4880879 4881000 -46632584 - MIR SINE MIR -78 184 53 207 0 0 0 chrY 4881237 4881260 -46632324 + (T)n Simple_repeat Simple_repeat 1 23 0 417 321 95 34 chrY 4881399 4881695 -46631889 + L2 LINE L2 2418 2731 -583 578 232 7 21 chrY 4881954 4882096 -46631488 - MLT1D LTR MaLR -65 440 301 299 234 0 27 chrY 4882212 4882323 -46631261 - L1ME LINE L1 -5282 788 681 2906 187 25 3 chrY 4882721 4883289 -46630295 - LTR22 LTR ERVK 0 580 1 7525 184 9 6 chrY 4883290 4885251 -46628333 - HERVK22 LTR ERVK -2 6835 4770 4168 127 15 128 chrY 4885251 4886178 -46627406 - LTR12 LTR ERV1 0 826 5 2487 182 15 26 chrY 4886193 4886804 -46626780 - pTR5 LTR ERV1 -1093 1345 742 * 12188 166 2 15 chrY 4886803 4889358 -46624226 - HERVK22 LTR ERVK -2064 4773 2267 1796 183 30 158 chrY 4889358 4889998 -46623586 + LTR6A LTR ERV1 1 564 0 12840 163 3 7 chrY 4889998 4892233 -46621351 - HERVK22 LTR ERVK -4566 2271 46 3048 109 15 0 chrY 4892233 4893046 -46620538 - L1P2 LINE L1 -420 5734 4909 2878 155 29 39 chrY 4893643 4894205 -46619379 - LTR6A LTR ERV1 0 564 9 195 42 0 0 chrY 4894774 4894798 -46618786 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2622 150 62 6 chrY 4896223 4896690 -46616894 - MER1A DNA MER1_type -6 523 31 2015 59 0 0 chrY 4897114 4897370 -46616214 + L1PA4 LINE L1 5899 6154 -1 22 56 0 0 chrY 4897582 4897618 -46615966 + AT_rich Low_complexity Low_complexity 1 36 0 465 204 0 0 chrY 4898305 4898437 -46615147 + CT-rich Low_complexity Low_complexity 1 132 0 207 364 8 8 chrY 4898851 4898972 -46614612 + (TTG)n Simple_repeat Simple_repeat 2 122 0 369 0 0 0 chrY 4899832 4899873 -46613711 + (CA)n Simple_repeat Simple_repeat 2 42 0 45 75 0 0 chrY 4899884 4899978 -46613606 + AT_rich Low_complexity Low_complexity 1 94 0 22 35 0 0 chrY 4900217 4900246 -46613338 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrY 4900331 4900354 -46613230 + AT_rich Low_complexity Low_complexity 1 23 0 1572 197 11 3 chrY 4900354 4900638 -46612946 - AluSx SINE Alu -25 287 2 21 36 0 0 chrY 4900864 4900892 -46612692 + AT_rich Low_complexity Low_complexity 1 28 0 2000 137 13 3 chrY 4901279 4901578 -46612006 + AluY SINE Alu 10 311 0 543 69 0 0 chrY 4904330 4904402 -46609182 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 369 180 0 22 chrY 4905710 4905799 -46607785 + L1MA9 LINE L1 6079 6165 -147 25 0 0 0 chrY 4905962 4905987 -46607597 + AT_rich Low_complexity Low_complexity 1 25 0 898 77 8 0 chrY 4906629 4906746 -46606838 + AluSc SINE Alu 1 118 -191 213 39 0 0 chrY 4908027 4908053 -46605531 + (TTG)n Simple_repeat Simple_repeat 2 27 0 213 311 27 27 chrY 4908148 4908222 -46605362 - MER5A DNA MER1_type -73 116 43 299 308 16 16 chrY 4908646 4908828 -46604756 + L1M4 LINE L1 5336 5517 -657 29 0 0 0 chrY 4908946 4908975 -46604609 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chrY 4909096 4909130 -46604454 + AT_rich Low_complexity Low_complexity 1 34 0 27 29 0 0 chrY 4909211 4909245 -46604339 + AT_rich Low_complexity Low_complexity 1 34 0 201 74 0 0 chrY 4910147 4910174 -46603410 + (A)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chrY 4910881 4910913 -46602671 + AT_rich Low_complexity Low_complexity 1 32 0 3405 181 42 20 chrY 4911417 4912208 -46601376 + L1PA16 LINE L1 5357 6164 -2 36 62 0 0 chrY 4912208 4912272 -46601312 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chrY 4913211 4913232 -46600352 + AT_rich Low_complexity Low_complexity 1 21 0 602 227 0 0 chrY 4914346 4914465 -46599119 + MER41E LTR ERV1 1 119 -393 2201 178 46 75 chrY 4914857 4915590 -46597994 - LTR1 LTR ERV1 -104 684 1 859 226 139 32 chrY 4916790 4917042 -46596542 - AluJo SINE Alu -23 289 11 22 56 0 0 chrY 4918779 4918815 -46594769 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chrY 4918971 4918994 -46594590 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 4919716 4919739 -46593845 + AT_rich Low_complexity Low_complexity 1 23 0 2260 83 13 0 chrY 4920500 4920813 -46592771 - L1PA6 LINE L1 -1 6153 5837 726 70 10 0 chrY 4920813 4920913 -46592671 + L1P2 LINE L1 5432 5532 -622 2235 102 0 7 chrY 4925445 4925740 -46587844 - AluY SINE Alu -16 295 3 239 294 56 24 chrY 4926389 4926515 -46587069 + MLT1F LTR MaLR 386 515 -27 1296 238 3 0 chrY 4926978 4927280 -46586304 + AluSx SINE Alu 1 303 -9 1342 206 0 59 chrY 4927328 4927634 -46585950 + AluSx SINE Alu 1 288 -14 250 276 31 10 chrY 4927641 4927739 -46585845 + GA-rich Low_complexity Low_complexity 3 102 0 414 69 0 0 chrY 4927741 4927799 -46585785 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 513 0 0 0 chrY 4928257 4928314 -46585270 + (TA)n Simple_repeat Simple_repeat 1 57 0 400 229 7 118 chrY 4928482 4928626 -46584958 - FLAM_C SINE Alu -5 128 1 262 289 13 0 chrY 4928768 4928844 -46584740 + MLT1E LTR MaLR 385 461 -132 201 74 0 0 chrY 4928902 4928929 -46584655 + (TG)n Simple_repeat Simple_repeat 2 28 0 246 163 20 0 chrY 4928944 4928993 -46584591 + L1MC/D LINE L1 5760 5809 -1999 568 363 55 14 chrY 4929941 4930362 -46583222 - L1M3b LINE L1 -5771 510 73 321 47 0 0 chrY 4930363 4930406 -46583178 + (T)n Simple_repeat Simple_repeat 1 43 0 1679 169 0 49 chrY 4930498 4930806 -46582778 + AluSg SINE Alu 1 293 -17 227 303 18 37 chrY 4930891 4931000 -46582584 - L1M3de LINE L1 -5898 755 649 1399 219 35 56 chrY 4931007 4931437 -46582147 - MSTB LTR MaLR -5 421 1 2682 7 0 0 chrY 4931763 4932051 -46581533 + AluYa5 SINE Alu 22 309 -2 2760 10 0 0 chrY 4932051 4932346 -46581238 + AluYa5 SINE Alu 15 309 -2 2049 147 0 7 chrY 4932351 4932657 -46580927 + AluSx SINE Alu 1 304 -8 265 366 21 24 chrY 4932686 4932941 -46580643 - L1M3de LINE L1 -5217 1436 605 608 255 34 39 chrY 4933286 4933458 -46580126 + L1MA4 LINE L1 5999 6171 -129 1242 223 3 42 chrY 4933458 4933768 -46579816 + AluJo SINE Alu 2 299 -13 608 255 34 39 chrY 4933768 4933803 -46579781 + L1MA4 LINE L1 6171 6205 -95 1443 222 3 14 chrY 4933834 4934122 -46579462 - AluSx SINE Alu -25 287 3 1511 196 28 3 chrY 4934604 4934889 -46578695 + AluSg SINE Alu 1 292 -18 327 233 53 15 chrY 4936836 4936969 -46576615 + L1M4 LINE L1 5308 5445 -733 1435 161 9 52 chrY 4936969 4937404 -46576180 + pTR5 LTR ERV1 743 1211 -1227 260 279 0 0 chrY 4937404 4937483 -46576101 + C-rich Low_complexity Low_complexity 1 79 0 314 43 43 0 chrY 4937484 4937531 -46576053 + pTR5 LTR ERV1 224 272 -2166 1330 153 18 0 chrY 4937531 4937759 -46575825 + AluSc SINE Alu 61 292 -17 1832 148 13 10 chrY 4938256 4938554 -46575030 - AluSc SINE Alu -10 299 1 258 255 32 0 chrY 4939824 4939918 -46573666 + (TA)n Simple_repeat Simple_repeat 2 98 0 821 237 0 25 chrY 4940445 4940681 -46572903 - AluJb SINE Alu -81 231 2 316 159 0 72 chrY 4940831 4940900 -46572684 + MER1B DNA MER1_type 213 276 -63 339 193 0 60 chrY 4941029 4941112 -46572472 + MER1B DNA MER1_type 243 320 -13 470 242 0 0 chrY 4941133 4941232 -46572352 - AluJ/FLAM SINE Alu -211 101 3 2831 243 61 48 chrY 4945769 4947507 -46566077 + L1MA8 LINE L1 4541 6291 0 31 0 0 0 chrY 4947640 4947671 -46565913 + AT_rich Low_complexity Low_complexity 1 31 0 916 224 27 54 chrY 4947818 4948112 -46565472 + AluJb SINE Alu 13 298 -14 229 294 44 38 chrY 4948159 4948319 -46565265 + L1M4c LINE L1 1203 1363 -5021 249 271 24 24 chrY 4949063 4949148 -46564436 + GA-rich Low_complexity Low_complexity 3 87 0 258 250 13 0 chrY 4949242 4949318 -46564266 + (CAGAGA)n Simple_repeat Simple_repeat 4 80 0 405 0 0 0 chrY 4950767 4950812 -46562772 + (CA)n Simple_repeat Simple_repeat 2 46 0 215 290 0 0 chrY 4953301 4953394 -46560190 + CT-rich Low_complexity Low_complexity 1 93 0 1542 220 0 0 chrY 4957925 4958264 -46555320 - AluSx SINE Alu 0 339 1 2080 135 3 0 chrY 4960007 4960296 -46553288 - AluSx SINE Alu -22 290 1 1174 254 7 0 chrY 4960300 4960579 -46553005 - AluJo SINE Alu -22 290 10 25 51 0 0 chrY 4962774 4962813 -46550771 + AT_rich Low_complexity Low_complexity 1 39 0 210 344 0 0 chrY 4963124 4963188 -46550396 + CT-rich Low_complexity Low_complexity 6 69 0 225 0 0 0 chrY 4963734 4963759 -46549825 + (T)n Simple_repeat Simple_repeat 1 25 0 2079 76 32 44 chrY 4963797 4964112 -46549472 + AluY SINE Alu 1 311 0 844 221 106 14 chrY 4964664 4964872 -46548712 + AluJb SINE Alu 56 282 -30 255 79 0 0 chrY 4964897 4964935 -46548649 + (CA)n Simple_repeat Simple_repeat 1 38 0 191 122 0 24 chrY 4965464 4965505 -46548079 + (TA)n Simple_repeat Simple_repeat 2 41 0 827 231 27 27 chrY 4967654 4967840 -46545744 - MER5A DNA MER1_type -2 187 2 2003 134 3 37 chrY 4968832 4969153 -46544431 + AluSx SINE Alu 1 310 -2 41635 64 3 14 chrY 4969173 4975289 -46538295 - L1PA4 LINE L1 -109 6046 2 5453 158 19 16 chrY 4975359 4976326 -46537258 + LTR5 LTR ERVK 1 969 0 447 309 0 0 chrY 4976498 4976621 -46536963 + MIR SINE MIR 83 205 -57 2007 151 3 3 chrY 4977805 4978117 -46535467 + AluSx SINE Alu 1 312 0 183 235 185 0 chrY 4978307 4978388 -46535196 + MIR3 SINE MIR 110 205 -3 1508 197 24 102 chrY 4978407 4978828 -46534756 + MLT1B LTR MaLR 3 390 0 1464 197 31 3 chrY 4979271 4979561 -46534023 - AluJo SINE Alu -9 303 6 615 302 123 28 chrY 4979571 4980140 -46533444 + L1ME4a LINE L1 5445 6067 -54 275 257 86 53 chrY 4980227 4980379 -46533205 + L3 LINE CR1 1304 1460 -117 317 264 227 40 chrY 4980413 4980792 -46532792 - L2 LINE L2 -17 3296 2847 374 258 118 42 chrY 4980843 4981139 -46532445 + MLT1H LTR MaLR 138 536 -13 325 242 61 30 chrY 4983740 4983839 -46529745 - L2 LINE L2 -11 3261 3160 232 250 40 13 chrY 4984124 4984200 -46529384 + L1ME3A LINE L1 5922 5999 -171 699 240 89 13 chrY 4984270 4984495 -46529089 + L1ME3A LINE L1 5920 6161 -9 1077 191 0 28 chrY 4984521 4984736 -46528848 - MER3 DNA MER1_type 0 209 1 256 250 8 100 chrY 4987150 4987270 -46526314 + MER113 DNA MER1_type? 99 207 -314 699 266 48 24 chrY 4987854 4988106 -46525478 - LTR16C LTR ERVL -8 483 226 312 295 21 11 chrY 4991144 4991239 -46522345 + MIR SINE MIR 127 222 -40 298 242 137 40 chrY 4991931 4992055 -46521529 - MIR SINE MIR -21 241 106 233 252 118 50 chrY 4992960 4993079 -46520505 + MIR SINE MIR 16 142 -66 243 23 68 0 chrY 4994053 4994097 -46519487 + T-rich Low_complexity Low_complexity 2 48 0 468 280 119 45 chrY 4995163 4995406 -46518178 - MIR SINE MIR 0 262 2 298 354 78 10 chrY 4995976 4996168 -46517416 + MIR SINE MIR 6 210 -52 1093 175 16 0 chrY 4996428 4996611 -46516973 + MER5A DNA MER1_type 1 186 -3 488 248 88 0 chrY 4996620 4996733 -46516851 + L2 LINE L2 3191 3313 0 190 211 53 0 chrY 4996758 4996796 -46516788 + L2 LINE L2 3180 3219 -94 239 320 8 86 chrY 4997474 4997602 -46515982 - L2 LINE L2 -258 3014 2897 457 239 18 0 chrY 4997987 4998096 -46515488 - L1ME LINE L1 -454 5667 5557 205 299 72 31 chrY 4998374 4998471 -46515113 + L2 LINE L2 2178 2278 -1036 25 51 0 0 chrY 4998870 4998909 -46514675 + AT_rich Low_complexity Low_complexity 1 39 0 39 0 0 0 chrY 4998958 4998997 -46514587 + AT_rich Low_complexity Low_complexity 1 39 0 2219 143 74 20 chrY 4999339 4999731 -46513853 + MLT2C2 LTR ERVL 8 420 -44 993 144 144 6 chrY 5000125 5000305 -46513279 - MER3 DNA MER1_type 0 209 5 319 321 20 2 chrY 5000863 5000988 -46512596 + MIR SINE MIR 30 154 -62 316 320 48 0 chrY 5000991 5001094 -46512490 - L2 LINE L2 0 3313 3206 243 302 42 98 chrY 5001835 5002050 -46511534 - MLT1K LTR MaLR -182 406 204 1024 250 21 8 chrY 5003130 5003370 -46510214 - MIR SINE MIR -13 249 7 318 239 15 0 chrY 5003782 5003849 -46509735 + MER94 DNA DNA 64 131 -3 531 90 0 0 chrY 5004400 5004478 -46509106 + (TC)n Simple_repeat Simple_repeat 1 78 0 192 152 0 0 chrY 5004521 5004554 -46509030 + A-rich Low_complexity Low_complexity 1 33 0 237 328 138 36 chrY 5004769 5005132 -46508452 + L2 LINE L2 2578 2977 -337 480 341 8 0 chrY 5005151 5005283 -46508301 + L2 LINE L2 3181 3313 0 188 255 39 20 chrY 5005421 5005472 -46508112 - MIR3 SINE MIR -46 162 111 213 39 0 0 chrY 5005719 5005745 -46507839 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1188 245 75 13 chrY 5006624 5007127 -46506457 + MLT1G1 LTR MaLR 1 589 -6 297 0 0 0 chrY 5007621 5007654 -46505930 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chrY 5008115 5008143 -46505441 + AT_rich Low_complexity Low_complexity 1 28 0 285 357 7 56 chrY 5008620 5008763 -46504821 - MIR3 SINE MIR -2 206 71 226 231 22 0 chrY 5009351 5009442 -46504142 + (TA)n Simple_repeat Simple_repeat 2 94 0 279 0 0 0 chrY 5009814 5009845 -46503739 + (A)n Simple_repeat Simple_repeat 1 31 0 2172 120 0 0 chrY 5009855 5010156 -46503428 + AluY SINE Alu 2 302 -9 215 287 140 15 chrY 5010268 5010404 -46503180 - L2 LINE L2 -193 3120 2968 1344 206 10 40 chrY 5010867 5011168 -46502416 + AluJo SINE Alu 1 292 -20 941 220 173 34 chrY 5011175 5011498 -46502086 + L1ME3A LINE L1 5796 6163 -7 21 0 0 0 chrY 5011858 5011879 -46501705 + AT_rich Low_complexity Low_complexity 1 21 0 376 169 31 15 chrY 5012151 5012216 -46501368 + Charlie5 DNA MER1_type 2 67 -2545 1993 129 4 0 chrY 5013543 5013821 -46499763 - AluSq SINE Alu -27 286 8 459 35 0 0 chrY 5014046 5014103 -46499481 + (TC)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chrY 5014335 5014359 -46499225 + AT_rich Low_complexity Low_complexity 1 24 0 280 237 0 0 chrY 5014365 5014424 -46499160 + L1MC/D LINE L1 5548 5606 -2202 186 320 27 13 chrY 5014839 5014914 -46498670 - MIR3 SINE MIR -130 78 3 184 119 48 48 chrY 5016367 5016409 -46497175 + L3b LINE CR1 1400 1441 -142 1779 248 120 26 chrY 5016456 5016933 -46496651 + MLT1E LTR MaLR 1 536 -57 1545 68 0 5 chrY 5016933 5017124 -46496460 - L1PA4 LINE L1 -6 6149 5960 1779 248 120 26 chrY 5017124 5017187 -46496397 + MLT1E LTR MaLR 536 592 -1 4350 80 14 16 chrY 5017188 5018223 -46495361 + MER11A LTR ERVK 1 1266 0 370 236 39 99 chrY 5018969 5019151 -46494433 + MIR SINE MIR 79 249 -13 1695 264 90 104 chrY 5019232 5019477 -46494107 - L2 LINE L2 0 3313 3066 2024 159 3 0 chrY 5019477 5019786 -46493798 + AluSx SINE Alu 3 312 0 1695 264 90 104 chrY 5019786 5020934 -46492650 - L2 LINE L2 -247 3066 1969 1278 203 8 8 chrY 5021514 5021770 -46491814 + L1MD3 LINE L1 7717 7972 -23 751 122 0 104 chrY 5022025 5022160 -46491424 - L1MB4 LINE L1 0 6180 6063 1556 207 0 10 chrY 5022160 5022464 -46491120 - AluJo SINE Alu -11 301 1 751 122 0 104 chrY 5022464 5022492 -46491092 - L1MB4 LINE L1 -117 6063 6034 346 287 185 30 chrY 5022997 5023332 -46490252 - Charlie8 DNA MER1_type -1920 497 111 1833 170 21 0 chrY 5023643 5023932 -46489652 - AluJb SINE Alu -17 295 1 6842 195 14 25 chrY 5025595 5026982 -46486602 + L1P LINE L1 12 1384 -4762 11743 92 22 0 chrY 5026982 5029340 -46484244 + L1PA6 LINE L1 3763 6152 -2 777 250 40 0 chrY 5030297 5030473 -46483111 + MER3 DNA MER1_type 27 209 0 587 174 157 6 chrY 5030482 5030636 -46482948 - MER5A DNA MER1_type -5 184 4 235 217 43 11 chrY 5030754 5030846 -46482738 - Charlie7 DNA MER1_type -105 2507 2413 844 273 50 66 chrY 5030859 5031240 -46482344 - Charlie7 DNA MER1_type -1919 693 319 250 313 18 0 chrY 5031296 5031408 -46482176 - Charlie7 DNA MER1_type -2415 197 84 2022 135 0 3 chrY 5031717 5032006 -46481578 + AluSc SINE Alu 6 293 -16 279 274 54 41 chrY 5032028 5032269 -46481315 + L1 LINE L1 4737 4982 -1164 945 207 69 20 chrY 5032275 5032478 -46481106 + MER20 DNA MER1_type 5 217 -2 209 233 58 126 chrY 5032552 5032655 -46480929 + MIR SINE MIR 56 151 -111 183 357 0 0 chrY 5032862 5032904 -46480680 + L2 LINE L2 3154 3195 -77 1375 208 0 64 chrY 5036820 5037174 -46476410 - AluJo SINE Alu 0 312 1 345 252 38 63 chrY 5037690 5037849 -46475735 - MIR3 SINE MIR -43 165 11 441 253 175 0 chrY 5037952 5038106 -46475478 + MER5A DNA MER1_type 9 189 0 536 304 132 9 chrY 5038518 5038738 -46474846 + MIR SINE MIR 16 262 0 1577 170 76 3 chrY 5038857 5039146 -46474438 + AluJb SINE Alu 1 310 -2 749 190 0 0 chrY 5039157 5039278 -46474306 + FLAM_C SINE Alu 3 123 -20 375 60 0 0 chrY 5039278 5039328 -46474256 + (GA)n Simple_repeat Simple_repeat 1 50 0 918 73 0 0 chrY 5039488 5039611 -46473973 + (GGGAA)n Simple_repeat Simple_repeat 3 125 0 1258 171 45 87 chrY 5040933 5041177 -46472407 + AluJb SINE Alu 1 231 -81 2305 75 7 10 chrY 5041177 5041482 -46472102 - AluY SINE Alu -7 304 1 1258 171 45 87 chrY 5041482 5041547 -46472037 + AluJb SINE Alu 231 297 -15 231 114 0 0 chrY 5041618 5041653 -46471931 + (A)n Simple_repeat Simple_repeat 1 35 0 278 211 111 0 chrY 5041986 5042076 -46471508 - L1MC4a LINE L1 -1635 6173 6074 1665 159 3 26 chrY 5042279 5042581 -46471003 + AluSq SINE Alu 9 303 -10 414 259 239 24 chrY 5042592 5042797 -46470787 - L1MC4a LINE L1 -1946 5862 5614 628 40 0 0 chrY 5042805 5042881 -46470703 + L1MA1 LINE L1 6227 6302 0 269 106 0 21 chrY 5042909 5042956 -46470628 + (TA)n Simple_repeat Simple_repeat 2 47 0 241 265 51 82 chrY 5043082 5043278 -46470306 - L1MC4a LINE L1 -2359 5449 5260 702 147 10 0 chrY 5043353 5043455 -46470129 - AluSg/x SINE Alu -17 292 190 366 299 107 27 chrY 5044203 5044427 -46469157 + L1MC4a LINE L1 5484 5725 -396 275 263 18 26 chrY 5044488 5044602 -46468982 + L1MC4a LINE L1 5814 5926 -1882 23 0 0 0 chrY 5044624 5044647 -46468937 + AT_rich Low_complexity Low_complexity 1 23 0 1429 189 0 12 chrY 5044880 5045139 -46468445 - AluJo SINE Alu -13 299 44 2053 107 3 14 chrY 5045147 5045436 -46468148 - AluSc SINE Alu -11 298 13 2750 132 30 0 chrY 5045999 5046454 -46467130 + MER1A DNA MER1_type 1 529 0 358 172 134 112 chrY 5046491 5046531 -46467053 + MER5A DNA MER1_type 39 77 -112 1971 154 0 3 chrY 5046531 5046830 -46466754 + AluSg SINE Alu 3 300 -10 358 172 134 112 chrY 5046830 5046923 -46466661 + MER5A DNA MER1_type 77 175 -14 671 219 11 27 chrY 5047081 5047264 -46466320 + MER96B DNA MER1_type? 1 180 -237 1495 167 0 15 chrY 5047264 5047528 -46466056 + AluJb SINE Alu 1 260 -52 430 152 89 0 chrY 5047559 5047638 -46465946 + MER96B DNA MER1_type? 168 253 -164 1725 178 0 3 chrY 5048174 5048466 -46465118 + AluJb SINE Alu 1 291 -21 312 235 17 92 chrY 5048527 5048646 -46464938 + MIR SINE MIR 119 228 -34 233 322 79 38 chrY 5049251 5049340 -46464244 + MIR SINE MIR 71 164 -44 1065 176 0 0 chrY 5050138 5050303 -46463281 - AluSg/x SINE Alu -76 234 70 415 257 126 50 chrY 5050454 5050676 -46462908 - MER102b DNA MER1_type -25 316 78 200 238 0 0 chrY 5051191 5051233 -46462351 + A-rich Low_complexity Low_complexity 1 42 0 1255 154 5 32 chrY 5052065 5052286 -46461298 - L1MB5 LINE L1 0 6174 5960 5050 170 12 31 chrY 5052329 5053348 -46460236 - L1MA9 LINE L1 -39 6273 5275 246 62 0 0 chrY 5053633 5053665 -46459919 + (CA)n Simple_repeat Simple_repeat 2 33 0 4440 181 7 3 chrY 5054271 5055022 -46458562 + MER6 DNA MER2_type 111 864 -1 236 207 9 153 chrY 5055799 5055910 -46457674 + MER5A DNA MER1_type 11 105 -84 254 291 68 17 chrY 5056280 5056397 -46457187 + L2 LINE L2 3191 3313 0 571 174 0 33 chrY 5058049 5058170 -46455414 - Charlie1 DNA MER1_type -25 2736 2620 * 832 170 211 5 chrY 5058158 5058352 -46455232 - Charlie1 DNA MER1_type -2527 234 1 573 267 186 5 chrY 5058721 5058942 -46454642 + MIR SINE MIR 2 262 0 26 30 0 0 chrY 5059054 5059087 -46454497 + AT_rich Low_complexity Low_complexity 1 33 0 1268 173 21 158 chrY 5059232 5059655 -46453929 + MLT1A1 LTR MaLR 1 365 0 357 232 14 0 chrY 5059656 5059725 -46453859 - L2 LINE L2 -17 3255 3186 473 115 42 0 chrY 5060402 5060498 -46453086 + CT-rich Low_complexity Low_complexity 2 101 0 1463 230 17 0 chrY 5060498 5060666 -46452918 - AluJb SINE Alu -7 305 128 185 0 40 0 chrY 5060666 5060691 -46452893 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1463 230 17 0 chrY 5060691 5060822 -46452762 - AluJb SINE Alu -184 128 1 927 235 11 0 chrY 5061025 5061212 -46452372 + AluJo SINE Alu 121 309 -3 23 33 0 0 chrY 5061237 5061267 -46452317 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chrY 5062159 5062179 -46451405 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 327 49 0 0 chrY 5062178 5062219 -46451365 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chrY 5062857 5062882 -46450702 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chrY 5062987 5063030 -46450554 + AT_rich Low_complexity Low_complexity 1 43 0 718 279 14 9 chrY 5063663 5063885 -46449699 + MIR SINE MIR 10 232 -30 1278 237 105 50 chrY 5063936 5064401 -46449183 + MLT1D LTR MaLR 15 505 0 518 259 93 58 chrY 5064746 5065360 -46448224 - L1MEd LINE L1 -4862 1343 784 2106 132 0 3 chrY 5066170 5066465 -46447119 + AluY SINE Alu 1 294 -17 1163 185 9 36 chrY 5066512 5066734 -46446850 + MER58A DNA MER1_type 9 224 0 387 41 0 0 chrY 5067274 5067323 -46446261 + (CA)n Simple_repeat Simple_repeat 2 50 0 670 286 15 17 chrY 5067798 5068509 -46445075 + BSR/Beta Satellite Satellite 1 709 -46 961 290 31 7 chrY 5068571 5068857 -46444727 + BSR/Beta Satellite Satellite 18 310 -69 582 255 17 27 chrY 5068916 5069179 -46444405 + BSR/Beta Satellite Satellite 1 260 -15 541 275 32 36 chrY 5069388 5070080 -46443504 + BSR/Beta Satellite Satellite 1 689 -21 277 302 27 54 chrY 5070235 5070384 -46443200 + BSR/Beta Satellite Satellite 2 146 -6 1388 274 29 9 chrY 5070471 5071243 -46442341 + BSR/Beta Satellite Satellite 1 787 -7 711 285 15 12 chrY 5071349 5071683 -46441901 + BSR/Beta Satellite Satellite 1 335 -47 494 226 0 21 chrY 5071695 5071827 -46441757 + BSR/Beta Satellite Satellite 1 129 -34 608 252 31 51 chrY 5071867 5072594 -46440990 + BSR/Beta Satellite Satellite 1 712 0 954 301 19 12 chrY 5072624 5072949 -46440635 + BSR/Beta Satellite Satellite 35 361 -18 902 277 24 18 chrY 5072971 5074513 -46439071 + BSR/Beta Satellite Satellite 1 1551 -35 975 268 25 45 chrY 5074556 5076051 -46437533 + BSR/Beta Satellite Satellite 1 1464 -38 351 340 31 0 chrY 5076200 5076356 -46437228 + BSR/Beta Satellite Satellite 1 160 -17 1237 296 22 0 chrY 5076461 5076906 -46436678 + BSR/Beta Satellite Satellite 1 454 -50 587 260 7 17 chrY 5076943 5077247 -46436337 + BSR/Beta Satellite Satellite 1 300 -7 791 313 8 11 chrY 5077354 5077619 -46435965 + BSR/Beta Satellite Satellite 35 298 -81 2122 117 0 20 chrY 5077619 5077919 -46435665 + AluY SINE Alu 1 294 -17 973 264 26 31 chrY 5077950 5079563 -46434021 + BSR/Beta Satellite Satellite 1 1604 0 1155 274 27 27 chrY 5079646 5080345 -46433239 + BSR/Beta Satellite Satellite 1 699 -5 645 277 14 30 chrY 5080465 5081162 -46432422 + BSR/Beta Satellite Satellite 1 685 -17 270 305 67 29 chrY 5081315 5081420 -46432164 + BSR/Beta Satellite Satellite 40 148 -4 1210 311 17 0 chrY 5081555 5081977 -46431607 + BSR/Beta Satellite Satellite 1 429 0 255 315 0 69 chrY 5081991 5082121 -46431463 + BSR/Beta Satellite Satellite 15 135 -7 * 1286 289 17 23 chrY 5082025 5083782 -46429802 + BSR/Beta Satellite Satellite 1 1746 -30 598 267 15 15 chrY 5083817 5084173 -46429411 + BSR/Beta Satellite Satellite 1 356 -5 1113 257 27 21 chrY 5084202 5084533 -46429051 + BSR/Beta Satellite Satellite 29 361 -18 903 316 41 11 chrY 5084555 5085008 -46428576 + BSR/Beta Satellite Satellite 1 466 -52 502 269 18 17 chrY 5085074 5085742 -46427842 + BSR/Beta Satellite Satellite 1 668 -5 566 253 34 8 chrY 5085836 5086133 -46427451 + BSR/Beta Satellite Satellite 1 304 -49 527 281 11 35 chrY 5086212 5086516 -46427068 + BSR/Beta Satellite Satellite 1 296 -14 529 254 34 46 chrY 5086644 5087335 -46426249 + BSR/Beta Satellite Satellite 1 682 -27 1370 281 17 17 chrY 5087651 5088525 -46425059 + BSR/Beta Satellite Satellite 1 873 -10 1187 288 19 6 chrY 5088646 5089230 -46424354 + BSR/Beta Satellite Satellite 1 591 -125 559 275 37 38 chrY 5089347 5089915 -46423669 + BSR/Beta Satellite Satellite 1 567 -7 543 302 15 17 chrY 5090104 5090909 -46422675 + BSR/Beta Satellite Satellite 1 802 -9 250 293 67 13 chrY 5091628 5091703 -46421881 - LTR32 LTR ERVL -1 470 392 1604 180 22 0 chrY 5091703 5091981 -46421603 - AluSp SINE Alu -29 284 1 339 284 43 43 chrY 5091982 5092098 -46421486 - LTR32 LTR ERVL -341 130 15 319 49 0 0 chrY 5094821 5094862 -46418722 - L1P LINE L1 -2774 3372 3332 1990 204 35 88 chrY 5094940 5095590 -46417994 + LTR6A LTR ERV1 1 564 0 44147 73 3 2 chrY 5095590 5104451 -46409133 + HERVS71 LTR ERV1 1 8910 -68 1928 215 34 87 chrY 5104451 5105101 -46408483 + LTR6A LTR ERV1 1 564 0 11142 82 3 0 chrY 5105209 5106716 -46406868 - L1PA5 LINE L1 -2774 3372 1862 15448 83 5 2 chrY 5106720 5109518 -46404066 + L1PA5 LINE L1 3365 6173 0 1510 208 0 7 chrY 5109904 5110188 -46403396 + AluSc SINE Alu 3 284 -25 1597 196 3 3 chrY 5110965 5111292 -46402292 - AluSq SINE Alu 0 327 1 22 0 0 0 chrY 5111318 5111340 -46402244 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chrY 5112458 5112501 -46401083 + AT_rich Low_complexity Low_complexity 1 43 0 7047 275 56 11 chrY 5112515 5113550 -46400034 + L1PA12 LINE L1 1 988 -6593 504 0 0 0 chrY 5113550 5113606 -46399978 + (TTTCC)n Simple_repeat Simple_repeat 1 56 0 7047 275 56 11 chrY 5113606 5113785 -46399799 + L1PA12 LINE L1 988 1158 -6423 1701 188 3 0 chrY 5113785 5114077 -46399507 - AluSp SINE Alu -19 294 2 7047 275 56 11 chrY 5114077 5114777 -46398807 + L1PA12 LINE L1 1158 2002 -5579 2703 284 108 61 chrY 5114784 5116455 -46397129 + L1PA13 LINE L1 347 1938 -4859 195 100 0 0 chrY 5116455 5116485 -46397099 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2703 284 108 61 chrY 5116485 5117051 -46396533 + L1PA13 LINE L1 1938 2476 -4321 2058 125 0 41 chrY 5117051 5117370 -46396214 + AluY SINE Alu 2 307 -4 2703 284 108 61 chrY 5117370 5117651 -46395933 + L1PA13 LINE L1 2476 3154 -3643 45 0 0 0 chrY 5119018 5119063 -46394521 + AT_rich Low_complexity Low_complexity 1 45 0 236 300 14 0 chrY 5119063 5119133 -46394451 + L1M4c LINE L1 414 484 -5819 1710 195 0 0 chrY 5119489 5119792 -46393792 + AluSq SINE Alu 2 304 -9 711 69 0 0 chrY 5119810 5119912 -46393672 + (GAAAA)n Simple_repeat Simple_repeat 4 105 0 1804 132 34 0 chrY 5119924 5120190 -46393394 - AluSq SINE Alu 0 313 39 25 0 0 0 chrY 5120396 5120421 -46393163 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrY 5120488 5120516 -46393068 + AT_rich Low_complexity Low_complexity 1 28 0 225 280 21 0 chrY 5120559 5120652 -46392932 + A-rich Low_complexity Low_complexity 3 97 0 393 306 82 22 chrY 5120719 5120987 -46392597 + L1M4c LINE L1 1374 1657 -4727 792 284 94 33 chrY 5121013 5121643 -46391941 + L1M4c LINE L1 2446 3113 -3269 1516 200 7 3 chrY 5121663 5121948 -46391636 - AluSc SINE Alu -23 286 1 231 264 0 0 chrY 5121980 5122033 -46391551 + L1 LINE L1 4527 4579 -1567 1118 279 20 8 chrY 5122045 5122650 -46390934 + BSR/Beta Satellite Satellite 1 612 -59 579 274 24 23 chrY 5122758 5123744 -46389840 + BSR/Beta Satellite Satellite 1 987 -46 1150 303 23 7 chrY 5123880 5124509 -46389075 + BSR/Beta Satellite Satellite 1 639 0 228 302 112 26 chrY 5124603 5124719 -46388865 + BSR/Beta Satellite Satellite 25 150 -2 641 275 15 25 chrY 5124776 5125483 -46388101 + BSR/Beta Satellite Satellite 1 699 -66 228 370 36 0 chrY 5125518 5125656 -46387928 + BSR/Beta Satellite Satellite 6 148 -4 1220 294 29 5 chrY 5125786 5126265 -46387319 + BSR/Beta Satellite Satellite 1 490 -15 1529 196 3 20 chrY 5126272 5126401 -46387183 + AluSg SINE Alu 1 131 -179 551 104 9 0 chrY 5126401 5126507 -46387077 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1529 196 3 20 chrY 5126507 5126683 -46386901 + AluSg SINE Alu 131 301 -9 1189 300 18 9 chrY 5126715 5127579 -46386005 + BSR/Beta Satellite Satellite 1 871 -254 255 250 22 43 chrY 5127578 5127670 -46385914 - LTR22A LTR ERVK 0 458 369 * 1365 251 44 18 chrY 5127804 5128191 -46385393 - LTR22 LTR ERVK -112 397 1 4506 195 42 4 chrY 5128191 5129210 -46384374 - HERVK22 LTR ERVK 0 6837 3180 447 158 0 13 chrY 5129208 5129284 -46384300 - HERVK22 LTR ERVK -3960 2877 2803 * 1118 159 92 59 chrY 5129284 5129523 -46384061 - LTR17 LTR ERV1 0 780 534 2510 157 2 16 chrY 5129524 5129950 -46383634 - LTR17 LTR ERV1 -360 420 1 4182 165 55 16 chrY 5129950 5131175 -46382409 - HERVK22 LTR ERVK -4031 2806 1 323 273 0 0 chrY 5131175 5131252 -46382332 - LTR22A LTR ERVK 0 458 382 264 170 0 0 chrY 5131292 5131345 -46382239 + (CAG)n Simple_repeat Simple_repeat 3 55 0 1231 242 74 25 chrY 5131426 5131790 -46381794 - LTR22 LTR ERVK -127 382 1 679 330 0 0 chrY 5131792 5132007 -46381577 + BSR/Beta Satellite Satellite 121 335 -44 379 295 0 0 chrY 5132018 5132146 -46381438 + BSR/Beta Satellite Satellite 1 128 -34 580 260 35 33 chrY 5132191 5132640 -46380944 + BSR/Beta Satellite Satellite 1 449 -46 1049 297 17 8 chrY 5132657 5133454 -46380130 + BSR/Beta Satellite Satellite 1 804 -35 516 279 21 27 chrY 5133497 5134495 -46379089 + BSR/Beta Satellite Satellite 1 991 -5 1375 280 10 12 chrY 5134667 5135272 -46378312 + BSR/Beta Satellite Satellite 1 603 -15 284 300 19 19 chrY 5135363 5135527 -46378057 + BSR/Beta Satellite Satellite 1 164 -58 504 277 16 23 chrY 5135684 5135957 -46377627 + BSR/Beta Satellite Satellite 1 270 -10 1154 293 4 18 chrY 5135982 5136401 -46377183 + BSR/Beta Satellite Satellite 1 413 -23 576 278 14 21 chrY 5136503 5137155 -46376429 + BSR/Beta Satellite Satellite 1 646 -4 364 303 0 42 chrY 5137227 5137369 -46376215 + BSR/Beta Satellite Satellite 3 138 -4 389 337 8 0 chrY 5137381 5137578 -46376006 + BSR/Beta Satellite Satellite 1 198 -6 1041 297 3 0 chrY 5137674 5137970 -46375614 + BSR/Beta Satellite Satellite 21 317 -62 580 295 2 5 chrY 5137998 5138371 -46375213 + BSR/Beta Satellite Satellite 1 372 -35 278 294 32 26 chrY 5138479 5138695 -46374889 + BSR/Beta Satellite Satellite 1 217 -6 * 555 258 11 46 chrY 5138609 5139140 -46374444 + BSR/Beta Satellite Satellite 1 512 -11 423 292 18 37 chrY 5139222 5139730 -46373854 + BSR/Beta Satellite Satellite 1 498 -5 548 282 14 14 chrY 5139749 5140301 -46373283 + BSR/Beta Satellite Satellite 1 551 0 1174 263 38 2 chrY 5140398 5140787 -46372797 + BSR/Beta Satellite Satellite 1 402 -6 322 294 28 32 chrY 5140798 5141089 -46372495 + BSR/Beta Satellite Satellite 1 289 0 506 269 9 39 chrY 5141207 5141854 -46371730 + BSR/Beta Satellite Satellite 1 627 0 680 316 25 0 chrY 5142238 5142507 -46371077 + BSR/Beta Satellite Satellite 1 275 -171 549 236 17 36 chrY 5142718 5143565 -46370019 + BSR/Beta Satellite Satellite 1 830 -22 899 270 32 35 chrY 5143773 5144084 -46369500 + BSR/Beta Satellite Satellite 21 330 -49 292 344 12 24 chrY 5144137 5144326 -46369258 + BSR/Beta Satellite Satellite 1 186 -7 306 345 0 0 chrY 5144409 5144528 -46369056 + BSR/Beta Satellite Satellite 4 122 -20 503 263 16 40 chrY 5144660 5145289 -46368295 + BSR/Beta Satellite Satellite 1 613 -23 328 357 37 4 chrY 5145447 5145658 -46367926 + BSR/Beta Satellite Satellite 1 217 -7 1100 288 24 4 chrY 5145677 5146097 -46367487 + BSR/Beta Satellite Satellite 1 428 -7 590 264 22 15 chrY 5146113 5146494 -46367090 + BSR/Beta Satellite Satellite 1 383 -44 2171 100 31 0 chrY 5146567 5146858 -46366726 - AluY SINE Alu -11 300 1 1142 293 6 6 chrY 5146873 5147543 -46366041 + BSR/Beta Satellite Satellite 1 670 -48 411 253 0 0 chrY 5147555 5147669 -46365915 + BSR/Beta Satellite Satellite 1 114 -50 579 300 6 18 chrY 5147763 5148173 -46365411 + BSR/Beta Satellite Satellite 1 404 -63 857 283 20 31 chrY 5148330 5148868 -46364716 + BSR/Beta Satellite Satellite 1 532 -20 1945 252 69 20 chrY 5148894 5149652 -46363932 - L1M4 LINE L1 -729 5445 4629 180 0 0 0 chrY 5149652 5149672 -46363912 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1945 252 69 20 chrY 5149672 5149914 -46363670 - L1M4 LINE L1 -1545 4629 4400 363 248 8 8 chrY 5149918 5150039 -46363545 + L1 LINE L1 3905 4025 -2121 4656 163 2 10 chrY 5150045 5150831 -46362753 - LTR17 LTR ERV1 0 780 1 1944 112 0 7 chrY 5150831 5151125 -46362459 - HERV17 LTR ERV1 0 8626 8335 295 26 0 0 chrY 5151115 5151154 -46362430 - HERV17 LTR ERV1 -1078 7548 7510 * 3941 103 4 0 chrY 5151147 5151709 -46361875 - HERV17 LTR ERV1 -2607 6019 5456 * 6279 118 4 2 chrY 5151696 5152648 -46360936 - HERV17 LTR ERV1 -3923 4703 3750 6780 113 9 1 chrY 5152667 5152977 -46360607 - HERV17 LTR ERV1 -5166 3460 3154 180 0 0 0 chrY 5152977 5152997 -46360587 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6780 113 9 1 chrY 5152997 5153709 -46359875 - HERV17 LTR ERV1 -5472 3154 2430 2159 121 0 6 chrY 5153698 5154030 -46359554 - HERV17 LTR ERV1 -6616 2010 1681 * 9557 140 42 38 chrY 5154029 5155885 -46357699 - HERV17 LTR ERV1 -6762 1864 2 4515 173 8 6 chrY 5155885 5156661 -46356923 - LTR17 LTR ERV1 0 780 4 981 234 7 0 chrY 5156691 5156960 -46356624 + L1 LINE L1 4057 4327 -1819 1899 141 3 3 chrY 5157114 5157428 -46356156 - AluY SINE Alu 0 314 1 1329 251 27 51 chrY 5157645 5158055 -46355529 + MER61B LTR ERV1 1 400 -25 207 173 0 0 chrY 5158059 5158111 -46355473 + A-rich Low_complexity Low_complexity 1 52 0 352 236 24 39 chrY 5158139 5158266 -46355318 + MER61B-int LTR ERV1 19 143 -5074 416 244 17 17 chrY 5158324 5158443 -46355141 + MER61B-int LTR ERV1 280 398 -4819 1588 199 12 39 chrY 5158506 5158937 -46354647 + MER61B-int LTR ERV1 422 840 -4377 1147 211 31 0 chrY 5158937 5159198 -46354386 + MER61B-int LTR ERV1 944 1212 -4005 * 9195 219 69 64 chrY 5159194 5163029 -46350555 + MER61B-int LTR ERV1 1361 5216 -1 1667 219 16 40 chrY 5163034 5163463 -46350121 + MER61B LTR ERV1 5 423 -2 317 285 16 8 chrY 5163493 5163616 -46349968 - L1 LINE L1 -1293 4853 4730 1116 234 23 23 chrY 5163699 5163955 -46349629 + AluJo SINE Alu 13 268 -44 306 352 0 0 chrY 5164152 5164328 -46349256 - L1 LINE L1 -3324 2822 2647 297 196 54 11 chrY 5164357 5164449 -46349135 + T-rich Low_complexity Low_complexity 2 97 0 376 194 24 59 chrY 5164506 5164676 -46348908 + T-rich Low_complexity Low_complexity 4 167 0 195 139 0 0 chrY 5164699 5164735 -46348849 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 202 197 56 14 chrY 5164752 5164823 -46348761 + T-rich Low_complexity Low_complexity 5 78 0 1396 204 62 0 chrY 5165235 5165509 -46348075 - AluSq SINE Alu -20 293 3 1396 280 22 32 chrY 5166413 5166874 -46346710 - LTR32 LTR ERVL -1 470 15 405 86 0 0 chrY 5168724 5168782 -46344802 + (TG)n Simple_repeat Simple_repeat 1 58 0 21 100 0 0 chrY 5169154 5169224 -46344360 + AT_rich Low_complexity Low_complexity 1 70 0 31 58 0 0 chrY 5169643 5169695 -46343889 + AT_rich Low_complexity Low_complexity 1 52 0 1542 195 50 0 chrY 5170080 5170199 -46343385 + AluY SINE Alu 1 113 -198 6170 44 5 0 chrY 5170199 5170948 -46342636 + L1PA3 LINE L1 5403 6155 0 1542 195 50 0 chrY 5170948 5171110 -46342474 + AluY SINE Alu 113 296 -15 29 28 0 0 chrY 5171614 5171650 -46341934 + AT_rich Low_complexity Low_complexity 1 36 0 1668 175 11 7 chrY 5172970 5173256 -46340328 - AluSc SINE Alu -14 295 9 5134 268 17 3 chrY 5173303 5175032 -46338552 + L1PA12 LINE L1 3 2007 -5574 1283 298 23 20 chrY 5175026 5175425 -46338159 + L1PA13 LINE L1 335 734 -6053 * 372 368 144 14 chrY 5175488 5175849 -46337735 + L1PA13 LINE L1 851 1258 -5529 1888 260 63 42 chrY 5175865 5176656 -46336928 + L1PA13 LINE L1 1410 2217 -4570 1616 247 117 24 chrY 5176653 5177328 -46336256 + L1PA13 LINE L1 2425 3162 -3635 * 253 343 22 15 chrY 5178236 5178373 -46335211 + L1M4c LINE L1 418 555 -5748 1678 188 26 0 chrY 5178719 5179022 -46334562 + AluSq SINE Alu 3 313 0 24 67 0 0 chrY 5179336 5179381 -46334203 + AT_rich Low_complexity Low_complexity 1 45 0 262 237 13 0 chrY 5179406 5179482 -46334102 + A-rich Low_complexity Low_complexity 3 79 0 284 329 47 12 chrY 5179548 5179803 -46333781 + L1M4c LINE L1 1370 1633 -4751 572 298 77 5 chrY 5179996 5180375 -46333209 + L1M4c LINE L1 2701 3106 -3276 286 23 47 0 chrY 5180378 5180421 -46333163 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 1271 230 7 11 chrY 5180426 5180704 -46332880 - AluSc SINE Alu -32 277 1 277 281 56 43 chrY 5180736 5181039 -46332545 + L1 LINE L1 4526 4832 -1314 536 268 8 10 chrY 5181048 5181365 -46332219 + BSR/Beta Satellite Satellite 1 316 0 999 288 22 20 chrY 5181395 5182722 -46330862 + BSR/Beta Satellite Satellite 1 1328 -39 455 274 19 19 chrY 5182775 5183284 -46330300 + BSR/Beta Satellite Satellite 1 509 -46 1017 281 14 20 chrY 5183419 5184048 -46329536 + BSR/Beta Satellite Satellite 1 625 0 285 299 31 20 chrY 5184135 5184282 -46329302 + BSR/Beta Satellite Satellite 1 148 -58 511 262 6 33 chrY 5184302 5184931 -46328653 + BSR/Beta Satellite Satellite 1 612 -28 246 325 34 17 chrY 5185099 5185216 -46328368 + BSR/Beta Satellite Satellite 258 376 -3 879 289 23 7 chrY 5185333 5186190 -46327394 + BSR/Beta Satellite Satellite 1 870 -2 1003 309 33 8 chrY 5186218 5186812 -46326772 + BSR/Beta Satellite Satellite 1 608 -122 305 319 11 0 chrY 5186923 5187017 -46326567 + BSR/Beta Satellite Satellite 1 95 -47 505 279 21 14 chrY 5187125 5187910 -46325674 + BSR/Beta Satellite Satellite 1 790 -25 575 259 34 26 chrY 5187944 5188145 -46325439 + BSR/Beta Satellite Satellite 1 202 -6 594 295 29 24 chrY 5188544 5188943 -46324641 + BSR/Beta Satellite Satellite 1 400 -18 579 270 10 25 chrY 5189080 5189691 -46323893 + BSR/Beta Satellite Satellite 1 602 -30 1193 288 26 18 chrY 5190004 5191810 -46321774 + BSR/Beta Satellite Satellite 1 1821 -49 575 282 31 24 chrY 5191928 5192904 -46320680 + BSR/Beta Satellite Satellite 1 982 -2 1151 300 20 12 chrY 5192993 5193545 -46320039 + BSR/Beta Satellite Satellite 1 556 -12 344 284 46 26 chrY 5193591 5193754 -46319830 + BSR/Beta Satellite Satellite 1 166 -23 951 293 39 13 chrY 5193826 5194284 -46319300 + BSR/Beta Satellite Satellite 1 469 -21 549 259 20 44 chrY 5194312 5194821 -46318763 + BSR/Beta Satellite Satellite 1 496 0 423 291 20 35 chrY 5194835 5195392 -46318192 + BSR/Beta Satellite Satellite 1 548 0 1159 289 13 7 chrY 5195489 5195790 -46317794 + BSR/Beta Satellite Satellite 28 330 -49 591 286 9 32 chrY 5195825 5196151 -46317433 + BSR/Beta Satellite Satellite 1 318 -40 680 245 14 35 chrY 5196425 5196969 -46316615 + BSR/Beta Satellite Satellite 1 532 -27 338 341 22 7 chrY 5197137 5197272 -46316312 + BSR/Beta Satellite Satellite 2 138 -14 1253 305 23 24 chrY 5197375 5198926 -46314658 + BSR/Beta Satellite Satellite 1 1549 -75 404 267 37 14 chrY 5198964 5199097 -46314487 + BSR/Beta Satellite Satellite 1 136 -39 515 303 11 17 chrY 5199146 5199967 -46313617 + BSR/Beta Satellite Satellite 1 816 -60 1242 300 14 8 chrY 5200028 5200778 -46312806 + BSR/Beta Satellite Satellite 1 754 -47 574 276 6 19 chrY 5200830 5201256 -46312328 + BSR/Beta Satellite Satellite 1 420 -5 241 320 0 0 chrY 5201275 5201350 -46312234 + BSR/Beta Satellite Satellite 34 108 -44 * 309 297 33 31 chrY 5201283 5201521 -46312063 + BSR/Beta Satellite Satellite 1 238 -10 547 274 18 48 chrY 5201674 5202391 -46311193 + BSR/Beta Satellite Satellite 1 696 -12 231 330 51 0 chrY 5202565 5202683 -46310901 + BSR/Beta Satellite Satellite 19 142 -10 1356 264 18 10 chrY 5202837 5203333 -46310251 + BSR/Beta Satellite Satellite 1 499 0 673 274 36 17 chrY 5203377 5204078 -46309506 + BSR/Beta Satellite Satellite 1 714 -13 1098 283 28 6 chrY 5204091 5204413 -46309171 + BSR/Beta Satellite Satellite 1 329 -50 565 280 20 21 chrY 5204436 5205624 -46307960 + BSR/Beta Satellite Satellite 1 1186 -49 979 295 27 33 chrY 5205763 5206378 -46307206 + BSR/Beta Satellite Satellite 1 611 -15 575 270 21 32 chrY 5206662 5207362 -46306222 + BSR/Beta Satellite Satellite 1 692 -7 233 425 0 0 chrY 5207519 5207658 -46305926 + BSR/Beta Satellite Satellite 5 143 -9 1244 285 19 21 chrY 5207677 5208641 -46304943 + BSR/Beta Satellite Satellite 1 962 -50 984 319 39 7 chrY 5208655 5209458 -46304126 + BSR/Beta Satellite Satellite 1 829 -15 584 257 55 20 chrY 5209484 5210329 -46303255 + BSR/Beta Satellite Satellite 1 874 0 929 288 21 12 chrY 5210359 5210685 -46302899 + BSR/Beta Satellite Satellite 35 363 -16 1497 189 121 22 chrY 5210836 5211207 -46302377 - LTR22 LTR ERVK -172 408 1 414 282 26 17 chrY 5211191 5211391 -46302193 + BSR/Beta Satellite Satellite 1 201 0 * 1112 308 29 8 chrY 5211427 5212630 -46300954 + BSR/Beta Satellite Satellite 1 1227 -46 612 262 17 38 chrY 5212680 5212921 -46300663 + BSR/Beta Satellite Satellite 1 235 -44 577 252 23 4 chrY 5212965 5213314 -46300270 + BSR/Beta Satellite Satellite 1 355 -39 521 287 18 13 chrY 5213358 5213638 -46299946 + BSR/Beta Satellite Satellite 1 281 -6 1305 289 14 23 chrY 5213745 5215190 -46298394 + BSR/Beta Satellite Satellite 1 1431 -3 339 322 27 4 chrY 5215367 5215526 -46298058 + BSR/Beta Satellite Satellite 1 162 -15 931 312 26 2 chrY 5215651 5216054 -46297530 + BSR/Beta Satellite Satellite 1 412 0 504 277 10 32 chrY 5216113 5216459 -46297125 + BSR/Beta Satellite Satellite 1 338 -35 6590 112 23 2 chrY 5216582 5217461 -46296123 - MER11D LTR ERVK 0 897 1 36121 86 10 4 chrY 5217461 5225016 -46288568 - HERVK11D LTR ERVK 0 7752 1 6934 91 23 2 chrY 5225016 5225893 -46287691 - MER11D LTR ERVK 0 897 3 941 321 8 2 chrY 5225918 5226639 -46286945 + BSR/Beta Satellite Satellite 1 724 -46 668 281 19 19 chrY 5226699 5227764 -46285820 + BSR/Beta Satellite Satellite 1 1064 -6 561 291 21 90 chrY 5227860 5228052 -46285532 + BSR/Beta Satellite Satellite 21 225 -154 1283 6 41 0 chrY 5228052 5228221 -46285363 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 561 291 21 90 chrY 5228221 5228237 -46285347 + BSR/Beta Satellite Satellite 225 241 -138 1539 189 23 7 chrY 5228237 5228539 -46285045 - AluSc SINE Alu -2 307 1 561 291 21 90 chrY 5228539 5228662 -46284922 + BSR/Beta Satellite Satellite 241 330 -49 475 278 24 30 chrY 5228725 5229050 -46284534 + BSR/Beta Satellite Satellite 1 323 -10 607 271 24 31 chrY 5229143 5229835 -46283749 + BSR/Beta Satellite Satellite 1 686 -48 356 379 8 0 chrY 5229968 5230125 -46283459 + BSR/Beta Satellite Satellite 1 158 -30 1061 274 22 13 chrY 5230184 5230830 -46282754 + BSR/Beta Satellite Satellite 1 651 -5 449 298 5 9 chrY 5230844 5231001 -46282583 + BSR/Beta Satellite Satellite 1 156 -44 963 316 15 6 chrY 5231071 5231397 -46282187 + BSR/Beta Satellite Satellite 35 363 -16 1028 308 11 4 chrY 5231413 5231862 -46281722 + BSR/Beta Satellite Satellite 1 452 -54 572 279 31 25 chrY 5232167 5232935 -46280649 + BSR/Beta Satellite Satellite 1 772 0 947 263 11 64 chrY 5233177 5233876 -46279708 + BSR/Beta Satellite Satellite 1 662 -51 572 284 5 28 chrY 5233922 5234688 -46278896 + BSR/Beta Satellite Satellite 1 748 -38 298 331 31 15 chrY 5234867 5234997 -46278587 + BSR/Beta Satellite Satellite 7 138 -14 1308 262 31 25 chrY 5235100 5236398 -46277186 + BSR/Beta Satellite Satellite 1 1305 -9 819 312 9 12 chrY 5236410 5236880 -46276704 + BSR/Beta Satellite Satellite 1 468 -35 661 226 9 0 chrY 5236922 5237085 -46276499 + BSR/Beta Satellite Satellite 1 164 -46 585 273 12 16 chrY 5237109 5237758 -46275826 + BSR/Beta Satellite Satellite 1 646 -5 914 317 16 22 chrY 5237790 5238511 -46275073 + BSR/Beta Satellite Satellite 1 716 -24 598 278 16 17 chrY 5238546 5239607 -46273977 + BSR/Beta Satellite Satellite 1 1059 -6 1111 281 18 33 chrY 5239700 5240453 -46273131 + BSR/Beta Satellite Satellite 1 741 -33 461 265 15 38 chrY 5240609 5240801 -46272783 + BSR/Beta Satellite Satellite 1 187 -15 471 265 9 33 chrY 5240837 5241214 -46272370 + BSR/Beta Satellite Satellite 1 367 -41 231 297 27 0 chrY 5241391 5241465 -46272119 + BSR/Beta Satellite Satellite 77 152 0 896 275 33 7 chrY 5241627 5242498 -46271086 + BSR/Beta Satellite Satellite 1 894 -46 979 300 17 4 chrY 5242514 5243139 -46270445 + BSR/Beta Satellite Satellite 1 633 -81 401 258 0 39 chrY 5243185 5243313 -46270271 + BSR/Beta Satellite Satellite 1 123 -43 565 279 17 25 chrY 5243366 5244308 -46269276 + BSR/Beta Satellite Satellite 1 934 0 797 270 19 19 chrY 5244413 5244676 -46268908 + BSR/Beta Satellite Satellite 36 298 -81 7952 187 26 15 chrY 5244678 5247262 -46266322 + MER61-int LTR ERV1 2141 4818 -399 243 0 0 0 chrY 5247264 5247291 -46266293 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 788 224 0 11 chrY 5247293 5247467 -46266117 + MER61-int LTR ERV1 4872 5043 -174 554 212 80 57 chrY 5247476 5247688 -46265896 - HERVKC4 LTR ERVK -2166 3096 2880 21 0 0 0 chrY 5248523 5248544 -46265040 + AT_rich Low_complexity Low_complexity 1 21 0 1309 159 0 43 chrY 5249123 5249356 -46264228 - AluSq SINE Alu -86 227 5 31 0 0 0 chrY 5250531 5250562 -46263022 + AT_rich Low_complexity Low_complexity 1 31 0 4528 285 16 15 chrY 5250578 5252329 -46261255 + L1PA12 LINE L1 1 2007 -5574 1143 319 71 5 chrY 5252360 5252783 -46260801 + L1PA13 LINE L1 346 796 -5991 336 369 6 6 chrY 5253009 5253169 -46260415 + L1PA13 LINE L1 1099 1258 -5529 2370 261 71 33 chrY 5253170 5254844 -46258740 + L1PA13 LINE L1 1394 3154 -3643 6273 132 7 14 chrY 5255922 5256978 -46256606 - MER11C LTR ERVK -23 1048 1 6988 98 0 1 chrY 5256978 5257976 -46255608 - HERVK11 LTR ERVK 0 7953 6957 * 7873 87 15 2 chrY 5257963 5259136 -46254448 - HERVK11 LTR ERVK -1188 6765 5525 869 143 0 0 chrY 5259134 5259274 -46254310 - HERVK11 LTR ERVK -3352 4601 4462 * 7304 65 4 0 chrY 5259248 5260217 -46253367 - HERVK11 LTR ERVK -4069 3884 2912 2701 106 35 2 chrY 5260209 5260790 -46252794 - HERVK11 LTR ERVK -5253 2700 1165 * 3455 164 35 14 chrY 5260765 5261418 -46252166 - HERVK11 LTR ERVK -7081 872 206 1926 162 0 0 chrY 5261406 5261734 -46251850 - HERVK11 LTR ERVK -7625 328 1 * 6183 123 6 40 chrY 5261751 5262845 -46250739 - MER11C LTR ERVK -14 1057 1 1334 246 0 0 chrY 5263562 5263839 -46249745 + AluSq SINE Alu 2 278 -35 653 12 0 24 chrY 5263842 5263925 -46249659 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 2127 105 7 7 chrY 5263931 5264225 -46249359 + AluY SINE Alu 5 298 -13 487 309 7 22 chrY 5264735 5265010 -46248574 + L1M4 LINE L1 1371 1641 -4743 415 287 96 32 chrY 5265054 5265647 -46247937 + L1M4 LINE L1 2444 3066 -3316 1138 177 12 129 chrY 5265647 5265980 -46247604 - AluSg SINE Alu -6 294 1 269 325 31 24 chrY 5266005 5266297 -46247287 + L1 LINE L1 4521 4814 -1332 415 267 68 4 chrY 5266324 5266482 -46247102 + BSR/Beta Satellite Satellite 1 168 -11 233 227 11 45 chrY 5266610 5266698 -46246886 + L1M4 LINE L1 4966 5050 -1332 438 288 25 10 chrY 5266735 5266972 -46246612 + BSR/Beta Satellite Satellite 1 240 -40 768 266 70 67 chrY 5267042 5267274 -46246310 + BSR/Beta Satellite Satellite 35 270 -109 1716 185 0 7 chrY 5267274 5267571 -46246013 - AluSc SINE Alu -14 295 1 768 266 70 67 chrY 5267571 5267669 -46245915 + BSR/Beta Satellite Satellite 270 366 -13 1278 278 11 24 chrY 5267686 5269200 -46244384 + BSR/Beta Satellite Satellite 1 1495 -2 557 278 99 14 chrY 5269351 5269563 -46244021 + BSR/Beta Satellite Satellite 21 250 -129 2028 118 3 0 chrY 5269563 5269850 -46243734 + AluY SINE Alu 1 288 -23 568 107 64 4 chrY 5269850 5270089 -46243495 + (TA)n Simple_repeat Simple_repeat 1 253 0 530 311 6 9 chrY 5270096 5270565 -46243019 + BSR/Beta Satellite Satellite 1 467 -11 4158 113 2 0 chrY 5270640 5271226 -46242358 - LTR14C LTR ERVK 0 587 1 398 245 5 18 chrY 5271390 5271546 -46242038 + BSR/Beta Satellite Satellite 1 153 -15 532 279 14 28 chrY 5271579 5271970 -46241614 + BSR/Beta Satellite Satellite 1 385 -27 272 356 27 7 chrY 5272140 5272286 -46241298 + BSR/Beta Satellite Satellite 3 151 -1 616 335 12 2 chrY 5272314 5272667 -46240917 + BSR/Beta Satellite Satellite 1 356 -35 501 279 13 38 chrY 5272720 5273216 -46240368 + BSR/Beta Satellite Satellite 1 483 -7 423 257 20 46 chrY 5273237 5273486 -46240098 + BSR/Beta Satellite Satellite 1 242 -26 402 295 0 0 chrY 5273616 5273749 -46239835 + BSR/Beta Satellite Satellite 1 133 -64 1197 280 15 22 chrY 5273906 5274561 -46239023 + BSR/Beta Satellite Satellite 1 650 -52 570 262 6 29 chrY 5274788 5275439 -46238145 + BSR/Beta Satellite Satellite 1 635 0 1039 296 20 11 chrY 5275534 5276294 -46237290 + BSR/Beta Satellite Satellite 1 1082 -382 1471 243 0 0 chrY 5276294 5276599 -46236985 + AluSg SINE Alu 3 307 -3 1039 296 20 11 chrY 5276599 5276946 -46236638 + BSR/Beta Satellite Satellite 1082 1424 -40 980 291 27 16 chrY 5277023 5277823 -46235761 + BSR/Beta Satellite Satellite 1 809 -34 477 267 35 47 chrY 5277870 5278291 -46235293 + BSR/Beta Satellite Satellite 1 415 -3 569 282 18 19 chrY 5278303 5278704 -46234880 + BSR/Beta Satellite Satellite 1 400 -29 1053 283 9 6 chrY 5278770 5279092 -46234492 + BSR/Beta Satellite Satellite 41 363 -16 975 320 0 2 chrY 5279108 5279569 -46234015 + BSR/Beta Satellite Satellite 1 460 -47 494 282 26 14 chrY 5279627 5280608 -46232976 + BSR/Beta Satellite Satellite 1 993 0 792 294 43 27 chrY 5280703 5281002 -46232582 + BSR/Beta Satellite Satellite 27 330 -49 431 270 9 60 chrY 5281055 5281216 -46232368 + BSR/Beta Satellite Satellite 1 169 -1726 7119 55 0 1 chrY 5281216 5282461 -46231123 + L1PA4 LINE L1 4904 6147 -8 431 270 9 60 chrY 5282461 5283037 -46230547 + BSR/Beta Satellite Satellite 169 1880 -15 432 268 17 40 chrY 5283061 5283450 -46230134 + BSR/Beta Satellite Satellite 1 380 -42 920 285 10 18 chrY 5283798 5284691 -46228893 + BSR/Beta Satellite Satellite 1 885 -44 1002 286 9 10 chrY 5284788 5285370 -46228214 + BSR/Beta Satellite Satellite 1 581 -122 320 310 0 0 chrY 5285472 5285576 -46228008 + BSR/Beta Satellite Satellite 1 104 -43 671 289 17 18 chrY 5285626 5286704 -46226880 + BSR/Beta Satellite Satellite 1 1077 0 987 274 27 19 chrY 5286799 5287332 -46226252 + BSR/Beta Satellite Satellite 1 537 -12 330 240 115 0 chrY 5287353 5287449 -46226135 + AluSg/x SINE Alu 190 296 -4 290 329 11 30 chrY 5287451 5287650 -46225934 + BSR/Beta Satellite Satellite 1 195 -1 562 263 4 39 chrY 5287768 5288267 -46225317 + BSR/Beta Satellite Satellite 1 481 -10 356 354 29 0 chrY 5288475 5288658 -46224926 + BSR/Beta Satellite Satellite 1 188 -7 872 290 22 24 chrY 5288677 5289398 -46224186 + BSR/Beta Satellite Satellite 1 719 -9 240 347 21 0 chrY 5289485 5289580 -46224004 - BSR/Beta Satellite Satellite -16 136 40 576 264 20 30 chrY 5289670 5290150 -46223434 - BSR/Beta Satellite Satellite -4 475 1 457 236 26 17 chrY 5290187 5290356 -46223228 - BSR/Beta Satellite Satellite 0 170 1 304 315 5 0 chrY 5290422 5290572 -46223012 - BSR/Beta Satellite Satellite -23 150 1 15791 76 2 1 chrY 5290591 5293487 -46220097 - L1PA4 LINE L1 -3 6152 3254 10183 68 1 0 chrY 5293488 5294908 -46218676 + L1PA4 LINE L1 1849 3269 -2877 1123 282 8 14 chrY 5294908 5295561 -46218023 - BSR/Beta Satellite Satellite -49 649 1 423 263 11 56 chrY 5295585 5295788 -46217796 - BSR/Beta Satellite Satellite 0 193 1 974 316 17 5 chrY 5295846 5296826 -46216758 - BSR/Beta Satellite Satellite -8 992 1 566 255 19 24 chrY 5296903 5297663 -46215921 - BSR/Beta Satellite Satellite -47 756 1 288 326 35 0 chrY 5297763 5297907 -46215677 - BSR/Beta Satellite Satellite -3 149 1 * 1065 296 6 5 chrY 5297781 5298268 -46215316 - BSR/Beta Satellite Satellite -44 487 1 1034 268 38 6 chrY 5298288 5298601 -46214983 - BSR/Beta Satellite Satellite -16 363 41 1129 264 31 22 chrY 5298615 5299487 -46214097 - BSR/Beta Satellite Satellite -45 880 1 315 328 25 0 chrY 5299590 5299712 -46213872 - BSR/Beta Satellite Satellite -15 137 13 412 301 0 0 chrY 5299893 5300006 -46213578 - BSR/Beta Satellite Satellite -27 115 3 569 253 12 30 chrY 5300093 5300472 -46213112 - BSR/Beta Satellite Satellite 0 372 1 563 271 10 19 chrY 5300782 5301040 -46212544 - BSR/Beta Satellite Satellite -15 255 1 1103 294 0 7 chrY 5301108 5301418 -46212166 - BSR/Beta Satellite Satellite -51 328 21 936 268 22 23 chrY 5301538 5303282 -46210302 - BSR/Beta Satellite Satellite -2 1742 1 239 329 13 79 chrY 5303609 5303761 -46209823 - BSR/Beta Satellite Satellite 0 142 1 980 304 13 5 chrY 5303815 5304175 -46209409 - BSR/Beta Satellite Satellite -49 362 1 464 282 41 40 chrY 5304264 5305201 -46208383 - BSR/Beta Satellite Satellite 0 937 1 523 280 8 18 chrY 5305225 5305839 -46207745 - BSR/Beta Satellite Satellite 0 607 1 483 261 44 22 chrY 5306036 5306311 -46207273 - BSR/Beta Satellite Satellite 0 281 1 820 309 14 3 chrY 5306458 5306746 -46206838 - BSR/Beta Satellite Satellite -63 316 26 510 277 26 26 chrY 5306854 5307644 -46205940 - BSR/Beta Satellite Satellite -4 996 175 197 0 0 67 chrY 5307644 5307674 -46205910 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 510 277 26 26 chrY 5307674 5307850 -46205734 - BSR/Beta Satellite Satellite -825 175 1 364 299 8 8 chrY 5307937 5308064 -46205520 - BSR/Beta Satellite Satellite -14 128 2 621 322 54 0 chrY 5308170 5308412 -46205172 - BSR/Beta Satellite Satellite -122 257 3 899 327 3 9 chrY 5308430 5308763 -46204821 - BSR/Beta Satellite Satellite -16 363 33 603 234 16 19 chrY 5308833 5309172 -46204412 - BSR/Beta Satellite Satellite 0 337 1 1015 277 29 11 chrY 5309189 5309658 -46203926 - BSR/Beta Satellite Satellite -44 477 1 418 344 11 4 chrY 5309677 5309883 -46203701 - BSR/Beta Satellite Satellite -14 207 1 579 281 19 23 chrY 5309990 5310702 -46202882 - BSR/Beta Satellite Satellite 0 709 1 1129 290 28 22 chrY 5310753 5311491 -46202093 - BSR/Beta Satellite Satellite -25 742 1 478 274 27 25 chrY 5311582 5312617 -46200967 - BSR/Beta Satellite Satellite -5 1037 1 372 260 10 10 chrY 5312670 5312793 -46200791 - BSR/Beta Satellite Satellite -2 123 1 6686 151 5 9 chrY 5312793 5314774 -46198810 - L1PA6 LINE L1 -1 6153 4170 710 264 11 0 chrY 5314793 5314975 -46198609 - BSR/Beta Satellite Satellite -170 209 26 444 289 22 15 chrY 5315148 5315283 -46198301 - BSR/Beta Satellite Satellite -4 138 3 384 269 12 41 chrY 5315296 5315639 -46197945 - BSR/Beta Satellite Satellite 0 332 1 955 295 15 18 chrY 5315653 5317333 -46196251 - BSR/Beta Satellite Satellite -2 1676 1 357 279 85 27 chrY 5317343 5317637 -46195947 - L1 LINE L1 -1314 4832 4522 1525 215 7 3 chrY 5317665 5317958 -46195626 + AluSc SINE Alu 1 294 -15 893 326 101 38 chrY 5317983 5318590 -46194994 - L1M4c LINE L1 -3294 3088 2444 2680 186 25 12 chrY 5318673 5319265 -46194319 + LTR10E LTR ERV1 3 602 -31 238 359 14 9 chrY 5319274 5319486 -46194098 - L1M4c LINE L1 -4785 1599 1387 8521 51 0 4 chrY 5319517 5321371 -46192213 - L1PA4 LINE L1 -2 6153 4303 1713 205 0 0 chrY 5321851 5322149 -46191435 - AluSq SINE Alu -15 298 1 1143 269 33 13 chrY 5322325 5323603 -46189981 - BSR/Beta Satellite Satellite -44 1303 1 491 292 20 16 chrY 5323681 5323962 -46189622 - BSR/Beta Satellite Satellite 0 282 1 488 272 29 16 chrY 5323973 5324717 -46188867 - BSR/Beta Satellite Satellite 0 753 1 1217 282 32 1 chrY 5324827 5325525 -46188059 - BSR/Beta Satellite Satellite -13 719 1 298 282 32 8 chrY 5325623 5325800 -46187784 - BSR/Beta Satellite Satellite 0 181 1 873 297 10 12 chrY 5325829 5326219 -46187365 - BSR/Beta Satellite Satellite -44 892 503 254 28 0 28 chrY 5326219 5326255 -46187329 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 873 297 10 12 chrY 5326255 5326723 -46186861 - BSR/Beta Satellite Satellite -433 503 1 1066 287 14 8 chrY 5326746 5327972 -46185612 - BSR/Beta Satellite Satellite -45 1233 1 451 277 7 41 chrY 5328422 5329004 -46184580 - BSR/Beta Satellite Satellite 0 562 1 1024 305 5 14 chrY 5329144 5329883 -46183701 - BSR/Beta Satellite Satellite -51 732 1 546 280 48 15 chrY 5329978 5330936 -46182648 - BSR/Beta Satellite Satellite 0 989 1 905 324 4 3 chrY 5330975 5331445 -46182139 - BSR/Beta Satellite Satellite -44 470 1 827 254 36 61 chrY 5331462 5331557 -46182027 - BSR/Beta Satellite Satellite -16 363 267 1821 139 3 36 chrY 5331557 5331858 -46181726 + AluSc SINE Alu 11 301 -8 827 254 36 61 chrY 5331858 5332092 -46181492 - BSR/Beta Satellite Satellite -112 267 42 439 304 5 3 chrY 5332171 5332686 -46180898 - BSR/Beta Satellite Satellite -1 516 1 1645 199 3 3 chrY 5334638 5334929 -46178655 + AluSq SINE Alu 1 294 -19 255 93 0 0 chrY 5334929 5334972 -46178612 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1645 199 3 3 chrY 5334972 5334987 -46178597 + AluSq SINE Alu 293 307 -6 2272 94 3 28 chrY 5335164 5335483 -46178101 + AluY SINE Alu 1 311 0 597 268 101 53 chrY 5335855 5336480 -46177104 + L1 LINE L1 2209 2867 -3279 1402 229 3 10 chrY 5336480 5336785 -46176799 - AluSc SINE Alu -6 303 1 597 268 101 53 chrY 5336785 5336804 -46176780 + L1 LINE L1 2867 2884 -3262 348 287 97 17 chrY 5336816 5337105 -46176479 + L1 LINE L1 4524 4835 -1311 836 282 43 8 chrY 5337111 5337582 -46176002 + BSR/Beta Satellite Satellite 1 454 -521 1717 173 0 14 chrY 5337582 5337860 -46175724 + AluSg SINE Alu 1 274 -36 836 282 43 8 chrY 5337860 5338042 -46175542 + BSR/Beta Satellite Satellite 454 962 -13 924 281 24 18 chrY 5338053 5338384 -46175200 + BSR/Beta Satellite Satellite 1 333 -46 617 271 11 30 chrY 5338447 5339635 -46173949 + BSR/Beta Satellite Satellite 1 1165 -30 1042 276 8 0 chrY 5339761 5340029 -46173555 + BSR/Beta Satellite Satellite 27 296 -83 336 293 35 17 chrY 5340097 5340321 -46173263 + BSR/Beta Satellite Satellite 1 228 0 555 260 10 27 chrY 5340504 5341009 -46172575 + BSR/Beta Satellite Satellite 1 496 -4 281 314 19 9 chrY 5341324 5341429 -46172155 + BSR/Beta Satellite Satellite 33 138 -14 1145 284 27 8 chrY 5341531 5342283 -46171301 + BSR/Beta Satellite Satellite 1 766 -34 968 274 11 31 chrY 5342354 5342980 -46170604 + BSR/Beta Satellite Satellite 1 613 -105 1607 166 4 4 chrY 5343031 5343290 -46170294 - AluSg SINE Alu -36 274 16 366 276 29 10 chrY 5343290 5343419 -46170165 - BSR/Beta Satellite Satellite -5 397 1 339 265 109 37 chrY 5343425 5343719 -46169865 - L1 LINE L1 -1311 4835 4521 540 254 113 62 chrY 5343727 5343746 -46169838 - L1 LINE L1 -3262 2884 2867 1391 228 10 16 chrY 5343746 5344053 -46169531 + AluSc SINE Alu 1 305 -4 540 254 113 62 chrY 5344053 5344676 -46168908 - L1 LINE L1 -3279 2867 2209 613 278 25 23 chrY 5344771 5345587 -46167997 + BSR/Beta Satellite Satellite 1 817 -50 956 309 27 9 chrY 5345601 5346383 -46167201 + BSR/Beta Satellite Satellite 1 795 -53 552 267 14 25 chrY 5346516 5347281 -46166303 + BSR/Beta Satellite Satellite 1 756 -42 1007 286 15 6 chrY 5347352 5347677 -46165907 + BSR/Beta Satellite Satellite 35 362 -17 903 288 17 2 chrY 5347698 5348146 -46165438 + BSR/Beta Satellite Satellite 1 454 -47 489 267 18 29 chrY 5348208 5349063 -46164521 + BSR/Beta Satellite Satellite 1 845 -8 335 307 34 8 chrY 5349080 5349279 -46164305 + BSR/Beta Satellite Satellite 1 204 0 1210 223 3 47 chrY 5349373 5349691 -46163893 + BSR/Beta Satellite Satellite 27 330 -49 264 325 58 8 chrY 5350016 5350136 -46163448 + BSR/Beta Satellite Satellite 12 137 -15 1226 265 31 0 chrY 5350239 5350564 -46163020 + BSR/Beta Satellite Satellite 1 335 -44 636 269 13 16 chrY 5350594 5351051 -46162533 + BSR/Beta Satellite Satellite 1 455 -41 706 309 40 13 chrY 5351144 5351442 -46162142 + BSR/Beta Satellite Satellite 58 363 -16 897 298 13 4 chrY 5351458 5351905 -46161679 + BSR/Beta Satellite Satellite 1 451 -55 496 235 32 44 chrY 5351962 5352295 -46161289 + BSR/Beta Satellite Satellite 1 329 -42 484 266 7 39 chrY 5352448 5353168 -46160416 + BSR/Beta Satellite Satellite 1 696 -38 352 346 12 6 chrY 5353313 5353572 -46160012 + BSR/Beta Satellite Satellite 1 260 -1 1165 253 14 17 chrY 5353595 5354357 -46159227 + BSR/Beta Satellite Satellite 1 760 -7 447 191 46 6 chrY 5354423 5354596 -46158988 + (TA)n Simple_repeat Simple_repeat 1 180 0 211 159 23 23 chrY 5354599 5354643 -46158941 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 938 296 12 18 chrY 5354746 5355074 -46158510 + BSR/Beta Satellite Satellite 45 370 -9 566 356 12 3 chrY 5355091 5355411 -46158173 + BSR/Beta Satellite Satellite 9 331 -48 414 251 20 20 chrY 5355423 5355547 -46158037 + BSR/Beta Satellite Satellite 1 124 -43 597 287 17 14 chrY 5355623 5356641 -46156943 + BSR/Beta Satellite Satellite 1 1021 -60 900 290 22 19 chrY 5356807 5357121 -46156463 + BSR/Beta Satellite Satellite 38 352 -27 381 275 27 50 chrY 5357155 5357492 -46156092 + BSR/Beta Satellite Satellite 1 329 0 552 284 28 18 chrY 5357676 5358413 -46155171 + BSR/Beta Satellite Satellite 1 744 -51 292 366 21 0 chrY 5358462 5358604 -46154980 + BSR/Beta Satellite Satellite 2 146 -6 891 239 35 0 chrY 5358691 5358921 -46154663 + BSR/Beta Satellite Satellite 1 238 -141 612 269 14 28 chrY 5359031 5359807 -46153777 + BSR/Beta Satellite Satellite 1 765 -6 1007 286 31 9 chrY 5359903 5360228 -46153356 + BSR/Beta Satellite Satellite 21 352 -27 444 269 4 32 chrY 5360240 5360429 -46153155 + BSR/Beta Satellite Satellite 1 183 -27 36313 84 9 8 chrY 5360481 5366594 -46146990 - L1PA5 LINE L1 -12 6142 11 1384 270 90 10 chrY 5366605 5367596 -46145988 - L1M2 LINE L1 -736 5447 4400 1459 242 24 12 chrY 5367600 5368092 -46145492 + L1M2 LINE L1 3905 4402 -1744 1476 236 11 24 chrY 5368110 5368479 -46145105 + MER61B LTR ERV1 60 423 -2 414 165 51 0 chrY 5368498 5368577 -46145007 + MER61B-int LTR ERV1 19 101 -5116 1986 214 26 33 chrY 5368715 5369258 -46144326 + MER61B-int LTR ERV1 297 835 -4382 1370 144 31 8 chrY 5369268 5369524 -46144060 + MER61B-int LTR ERV1 952 1213 -4004 * 3896 173 24 14 chrY 5369519 5370433 -46143151 + MER61B-int LTR ERV1 1361 2283 -2934 2364 136 34 2 chrY 5370487 5370900 -46142684 + HERVL-A1 LTR ERVL 5229 5654 0 1840 201 14 3 chrY 5370900 5371254 -46142330 + MLT2A1 LTR ERVL 1 358 -86 198 71 0 0 chrY 5372141 5372169 -46141415 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 22 35 0 0 chrY 5372680 5372709 -46140875 + AT_rich Low_complexity Low_complexity 1 29 0 317 297 123 21 chrY 5372820 5373056 -46140528 + L1M4 LINE L1 2678 2937 -3209 761 347 84 34 chrY 5373205 5373791 -46139793 + L1M4 LINE L1 3132 3772 -2374 1265 203 153 24 chrY 5373791 5374170 -46139414 - MSTA LTR MaLR 0 428 1 761 347 84 34 chrY 5374170 5374402 -46139182 + L1M4 LINE L1 3772 3991 -2155 473 289 9 33 chrY 5374403 5374614 -46138970 + L1M4 LINE L1 4051 4256 -1890 442 243 19 0 chrY 5374782 5374889 -46138695 + MER2 DNA MER2_type 2 110 -235 1340 275 29 60 chrY 5375177 5375409 -46138175 + MER66B-int LTR ERV1 4548 4786 -2970 1908 176 0 0 chrY 5375409 5375704 -46137880 - AluSc SINE Alu -13 296 2 1340 275 29 60 chrY 5375704 5376596 -46136988 + MER66B-int LTR ERV1 4786 6189 -1567 1396 223 28 6 chrY 5376739 5377062 -46136522 + MER66B-int LTR ERV1 6347 6676 0 1244 222 92 58 chrY 5377062 5377530 -46136054 + MER66B LTR ERV1 1 484 -2 470 217 83 54 chrY 5377589 5377902 -46135682 + MER96B DNA MER1_type? 31 352 -65 1716 251 60 22 chrY 5377919 5378580 -46135004 - L1MC1 LINE L1 -22 6311 5588 348 243 66 52 chrY 5378603 5378739 -46134845 - L1MC1 LINE L1 -833 5511 5374 472 176 140 0 chrY 5378740 5378876 -46134708 + FRAM SINE Alu 21 175 -1 225 214 24 24 chrY 5378876 5378960 -46134624 + GA-rich Low_complexity Low_complexity 2 85 0 1164 220 12 4 chrY 5379055 5379296 -46134288 - AluSx SINE Alu -6 306 64 211 271 0 0 chrY 5379497 5379545 -46134039 + (TG)n Simple_repeat Simple_repeat 2 49 0 242 296 178 7 chrY 5379768 5379920 -46133664 - MIR SINE MIR -28 234 57 189 0 0 0 chrY 5380021 5380042 -46133542 + (A)n Simple_repeat Simple_repeat 1 21 0 7460 41 3 0 chrY 5380358 5382102 -46131482 + L1PA3 LINE L1 4466 6213 0 33 56 0 0 chrY 5382989 5383043 -46130541 + AT_rich Low_complexity Low_complexity 1 54 0 402 298 0 0 chrY 5384873 5384977 -46128607 + FLAM_C SINE Alu 3 106 -37 304 169 17 0 chrY 5384993 5385052 -46128532 - MER1B DNA MER1_type -13 326 267 1069 220 73 12 chrY 5385205 5385464 -46128120 - MER1B DNA MER1_type -64 275 1 23 0 0 0 chrY 5385487 5385510 -46128074 + AT_rich Low_complexity Low_complexity 1 23 0 722 211 46 59 chrY 5385571 5385808 -46127776 + AluJb SINE Alu 1 234 -78 4262 93 12 5 chrY 5385843 5386426 -46127158 - LTR14C LTR ERVK 0 587 1 14544 96 18 1 chrY 5386450 5388538 -46125046 - HERVK14C LTR ERVK -5 7412 5289 1012 95 0 7 chrY 5388530 5388678 -46124906 - HERVK14C LTR ERVK -4872 2545 2399 * 9830 127 8 1 chrY 5388663 5390205 -46123379 - HERVK14C LTR ERVK -5865 1552 1 4106 114 3 0 chrY 5390205 5390790 -46122794 - LTR14C LTR ERVK 0 587 1 262 200 31 0 chrY 5391268 5391333 -46122251 + (TA)n Simple_repeat Simple_repeat 2 68 0 317 163 0 0 chrY 5391333 5391382 -46122202 + LTR14C LTR ERVK 539 587 0 4404 153 16 28 chrY 5391699 5393104 -46120480 - pTR5 LTR ERV1 -29 2409 56 21 0 0 0 chrY 5396841 5396862 -46116722 + AT_rich Low_complexity Low_complexity 1 21 0 1661 166 0 0 chrY 5397246 5397511 -46116073 - AluSc SINE Alu -44 265 1 1951 117 3 49 chrY 5397827 5398135 -46115449 + AluY SINE Alu 5 298 -13 23 0 0 0 chrY 5398317 5398340 -46115244 + AT_rich Low_complexity Low_complexity 1 23 0 41689 43 22 2 chrY 5398340 5404357 -46109227 - L1PA2 LINE L1 -3 6152 13 857 279 27 44 chrY 5404634 5404931 -46108653 - AluJo SINE Alu -10 292 1 28 0 0 0 chrY 5405038 5405066 -46108518 + AT_rich Low_complexity Low_complexity 1 28 0 1271 248 22 3 chrY 5406400 5406718 -46106866 - L1MB5 LINE L1 -13 6161 5838 1193 224 106 22 chrY 5406755 5407161 -46106423 - L1MB5 LINE L1 -429 5745 5306 22 0 0 0 chrY 5407696 5407718 -46105866 + AT_rich Low_complexity Low_complexity 1 22 0 872 121 21 0 chrY 5408255 5408395 -46105189 + AluSp/q SINE Alu 171 313 0 1393 213 28 7 chrY 5409264 5409580 -46104004 - AluSg SINE Alu 0 310 3 1162 242 31 7 chrY 5410085 5410378 -46103206 + AluJb SINE Alu 3 302 0 495 264 64 7 chrY 5410650 5410790 -46102794 - MLT1A1 LTR MaLR -2 363 216 1858 139 7 3 chrY 5410791 5411078 -46102506 - AluSc SINE Alu 0 309 22 374 120 0 0 chrY 5411079 5411129 -46102455 - Alu SINE Alu -252 50 1 * 476 270 40 20 chrY 5411129 5411275 -46102309 - MLT1A1 LTR MaLR -141 224 76 681 278 43 36 chrY 5411277 5411579 -46102005 - LTR65-int LTR ERV1 -258 4678 4375 334 235 24 0 chrY 5411673 5411758 -46101826 - LTR65-int LTR ERV1 -721 4215 4129 1280 195 13 9 chrY 5411796 5411904 -46101680 - AluJb SINE Alu -80 232 126 186 43 0 0 chrY 5411904 5411927 -46101657 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1280 195 13 9 chrY 5411927 5412049 -46101535 - AluJb SINE Alu -186 126 1 1270 229 45 68 chrY 5412049 5412401 -46101183 - LTR65-int LTR ERV1 -805 4131 3791 2193 104 3 3 chrY 5412401 5412699 -46100885 + AluY SINE Alu 3 300 -11 1270 229 45 68 chrY 5412699 5412813 -46100771 - LTR65-int LTR ERV1 -1145 3791 3676 2087 131 23 0 chrY 5412914 5413219 -46100365 - AluSx SINE Alu 0 312 1 1884 250 55 39 chrY 5413350 5414311 -46099273 - LTR65-int LTR ERV1 -3647 1289 287 263 232 0 0 chrY 5414325 5414394 -46099190 + GA-rich Low_complexity Low_complexity 2 70 0 289 326 23 0 chrY 5415551 5415683 -46097901 - LTR65-int LTR ERV1 -4605 331 197 198 0 0 0 chrY 5416202 5416224 -46097360 + (A)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chrY 5416508 5416528 -46097056 + (A)n Simple_repeat Simple_repeat 1 20 0 227 358 0 11 chrY 5416711 5416806 -46096778 + L1M3de LINE L1 277 370 -6283 2204 297 43 59 chrY 5417479 5418605 -46094979 + L1M3de LINE L1 286 2051 -4602 25 51 0 0 chrY 5418605 5418644 -46094940 + AT_rich Low_complexity Low_complexity 1 39 0 1842 158 3 3 chrY 5418646 5418950 -46094634 + AluSx SINE Alu 3 306 -6 1565 278 102 71 chrY 5418968 5419731 -46093853 + L1M2b LINE L1 2 788 -6421 882 267 17 75 chrY 5419751 5420167 -46093417 + L1M2b LINE L1 1553 1944 -5265 300 354 128 26 chrY 5420168 5420552 -46093032 - L1MEc LINE L1 -5918 478 56 1201 197 84 15 chrY 5420862 5421136 -46092448 - AluSx SINE Alu -18 294 2 1406 278 83 7 chrY 5421350 5421943 -46091641 - LTR65 LTR ERV1 -31 638 1 1258 201 31 31 chrY 5422532 5422821 -46090763 + AluSg SINE Alu 1 289 -21 777 232 0 24 chrY 5422900 5423064 -46090520 - FRAM SINE Alu -16 160 1 2193 111 0 3 chrY 5423648 5423946 -46089638 - AluY SINE Alu -14 297 1 229 302 16 0 chrY 5423957 5424020 -46089564 + L2 LINE L2 3231 3294 -19 240 35 0 0 chrY 5426011 5426040 -46087544 + (A)n Simple_repeat Simple_repeat 1 29 0 205 277 21 75 chrY 5426952 5427046 -46086538 + MIR SINE MIR 118 206 -56 455 295 7 0 chrY 5427126 5427265 -46086319 - MIR SINE MIR -25 237 98 1041 272 51 34 chrY 5428155 5428508 -46085076 - MLT1E LTR MaLR -2 591 233 1425 222 3 24 chrY 5428632 5428925 -46084659 + AluJo SINE Alu 7 293 -19 198 365 66 7 chrY 5428952 5429089 -46084495 - L2 LINE L2 -2531 783 639 25 51 0 0 chrY 5429089 5429128 -46084456 + AT_rich Low_complexity Low_complexity 1 39 0 266 380 32 16 chrY 5429178 5429365 -46084219 - L2 LINE L2 -2854 460 271 1227 276 49 18 chrY 5430031 5430477 -46083107 - MLT1C LTR MaLR 0 467 8 22 0 0 0 chrY 5430487 5430509 -46083075 + AT_rich Low_complexity Low_complexity 1 22 0 184 265 88 44 chrY 5431727 5431795 -46081789 + MIR3 SINE MIR 115 185 -23 2021 147 0 0 chrY 5431888 5432181 -46081403 + AluY SINE Alu 1 293 -18 25 110 0 0 chrY 5432192 5432301 -46081283 + AT_rich Low_complexity Low_complexity 1 109 0 28 0 0 0 chrY 5433060 5433088 -46080496 + AT_rich Low_complexity Low_complexity 1 28 0 1233 185 40 77 chrY 5433377 5433728 -46079856 + MLT1B LTR MaLR 1 338 -52 268 305 61 0 chrY 5434579 5434661 -46078923 + MIR SINE MIR 49 135 -127 401 283 25 8 chrY 5434833 5434953 -46078631 - MIR3 SINE MIR -21 187 66 190 193 57 91 chrY 5435728 5435816 -46077768 + L2 LINE L2 1550 1634 -1680 1790 149 20 3 chrY 5435995 5436296 -46077288 - AluSp SINE Alu -7 306 1 368 332 84 50 chrY 5436774 5437154 -46076430 + L2 LINE L2 2917 3309 -4 3188 160 32 0 chrY 5437260 5437822 -46075762 - LTR19B LTR ERV1 0 580 1 1222 144 0 34 chrY 5437841 5438049 -46075535 - HERVFH19I LTR ERV1 -20 7699 7499 * 2829 159 16 36 chrY 5438044 5438592 -46074992 - LTR19B-int LTR ERV1 -332 5254 4718 * 3066 115 9 26 chrY 5438591 5439250 -46074334 - LTR19B-int LTR ERV1 -489 6109 3889 207 0 0 0 chrY 5439250 5439273 -46074311 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5778 21 0 0 chrY 5439273 5439935 -46073649 - L1PA3 LINE L1 -9 6146 5485 6540 30 0 6 chrY 5439935 5440740 -46072844 + L1P LINE L1 4595 5394 -752 2558 232 69 6 chrY 5440740 5441418 -46072166 - LTR19B-int LTR ERV1 -2098 3119 2399 806 239 18 18 chrY 5441406 5441678 -46071906 - LTR19B-int LTR ERV1 -3091 2126 1855 * 734 209 0 0 chrY 5441688 5441846 -46071738 - AluSc SINE Alu 0 305 148 24 0 0 0 chrY 5442374 5442398 -46071186 + AT_rich Low_complexity Low_complexity 1 24 0 5041 135 20 23 chrY 5443183 5444022 -46069562 - LTR19B-int LTR ERV1 -3621 1965 1129 3780 197 29 14 chrY 5444008 5444527 -46069057 - LTR19B-int LTR ERV1 -4665 921 307 * 306 50 0 0 chrY 5444527 5444567 -46069017 + (GA)n Simple_repeat Simple_repeat 2 41 0 3780 197 29 14 chrY 5444567 5444879 -46068705 - LTR19B-int LTR ERV1 -5279 307 1 1606 168 14 10 chrY 5444879 5445171 -46068413 - LTR19B LTR ERV1 0 580 288 2131 139 12 0 chrY 5445171 5445508 -46068076 - THE1B-int LTR MaLR -1239 341 1 240 88 0 0 chrY 5445508 5445542 -46068042 - THE1B LTR MaLR 0 364 331 42 77 0 0 chrY 5445778 5445869 -46067715 + AT_rich Low_complexity Low_complexity 1 91 0 917 302 97 38 chrY 5446164 5446585 -46066999 - MLT1J LTR MaLR -47 464 19 3723 176 38 47 chrY 5447688 5448674 -46064910 - MER11C LTR ERVK -4 1067 1 297 305 128 0 chrY 5448674 5448815 -46064769 + LTR67 LTR ERVL 391 549 -8 24 32 0 0 chrY 5448872 5448903 -46064681 + AT_rich Low_complexity Low_complexity 1 31 0 1636 141 35 28 chrY 5449305 5449595 -46063989 + AluSx SINE Alu 1 292 -20 23 0 0 0 chrY 5450592 5450615 -46062969 + AT_rich Low_complexity Low_complexity 1 23 0 298 254 76 0 chrY 5451072 5451190 -46062394 - L1M4 LINE L1 -1539 4607 4481 5756 113 18 18 chrY 5451795 5453149 -46060435 - L1PA7 LINE L1 -8 6146 4787 301 174 0 58 chrY 5453150 5453219 -46060365 + L1MC4 LINE L1 6641 6705 -1337 6719 141 32 3 chrY 5453277 5454424 -46059160 - L1PA7 LINE L1 -1350 4796 3616 1811 166 3 3 chrY 5454424 5454725 -46058859 - AluSx SINE Alu -6 306 6 511 110 0 0 chrY 5454912 5454985 -46058599 + AluYb8 SINE Alu 163 235 -83 1601 167 18 62 chrY 5455918 5456259 -46057325 + MER52C LTR ERV1 944 1269 -9 25 51 0 0 chrY 5456439 5456478 -46057106 + AT_rich Low_complexity Low_complexity 1 39 0 247 311 110 37 chrY 5457061 5457225 -46056359 - MIR SINE MIR -67 195 20 39522 77 7 2 chrY 5457488 5463610 -46049974 + L1PA4 LINE L1 1 6154 -1 374 354 107 28 chrY 5463704 5464199 -46049385 + L2 LINE L2 2427 2960 -354 558 257 7 14 chrY 5464260 5464400 -46049184 - MLT1D LTR MaLR -67 438 300 310 265 80 31 chrY 5464518 5464680 -46048904 - L1M4b LINE L1 -5324 1535 1366 15990 164 25 12 chrY 5465034 5465940 -46047644 - HERVK22 LTR ERVK -4004 2833 1940 2292 88 10 0 chrY 5465940 5466237 -46047347 - AluY SINE Alu -11 300 1 15990 164 25 12 chrY 5466237 5468083 -46045501 - HERVK22 LTR ERVK -4897 1940 45 3020 117 19 2 chrY 5468083 5468775 -46044809 - L1P2 LINE L1 -420 5734 5032 5192 121 70 0 chrY 5468786 5469558 -46044026 - LTR12 LTR ERV1 0 826 1 5082 113 13 8 chrY 5469558 5470319 -46043265 - HERV17 LTR ERV1 -11 8388 7621 1794 174 88 52 chrY 5470312 5471071 -46042513 - HERV17 LTR ERV1 -5156 1740 936 * 25357 126 30 21 chrY 5471057 5475867 -46037717 - HERV17 LTR ERV1 -3455 4944 1 5198 125 36 2 chrY 5475867 5476666 -46036918 - LTR12 LTR ERV1 0 826 1 724 148 0 0 chrY 5476667 5476782 -46036802 - L1P2 LINE L1 -1123 5023 4909 221 0 0 33 chrY 5477858 5477888 -46035696 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrY 5478429 5478452 -46035132 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrY 5479773 5479815 -46033769 + AT_rich Low_complexity Low_complexity 1 42 0 32 0 0 0 chrY 5480064 5480096 -46033488 + AT_rich Low_complexity Low_complexity 1 32 0 317 0 0 65 chrY 5480193 5480239 -46033345 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 1480 212 11 0 chrY 5480244 5480527 -46033057 - AluSx SINE Alu -25 287 2 1984 109 27 0 chrY 5481155 5481449 -46032135 + AluY SINE Alu 10 311 0 2647 39 0 0 chrY 5481488 5481797 -46031787 - AluY SINE Alu -2 309 1 461 125 0 12 chrY 5484505 5484585 -46028999 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 361 172 0 65 chrY 5485880 5485973 -46027611 + L1MA9 LINE L1 6078 6164 -148 22 0 0 0 chrY 5486128 5486150 -46027434 + AT_rich Low_complexity Low_complexity 1 22 0 7177 70 0 0 chrY 5486622 5488325 -46025259 + L1PA5 LINE L1 4439 6141 -13 1600 182 24 7 chrY 5488526 5488822 -46024762 - AluSq SINE Alu -12 301 1 22 0 0 0 chrY 5489187 5489209 -46024375 + AT_rich Low_complexity Low_complexity 1 22 0 2004 127 3 0 chrY 5489209 5489493 -46024091 + AluSc SINE Alu 1 285 -24 245 128 21 0 chrY 5489496 5489543 -46024041 + (TAA)n Simple_repeat Simple_repeat 2 49 0 341 275 29 54 chrY 5489710 5489921 -46023663 + L1ME LINE L1 5353 5556 -608 395 124 4 77 chrY 5490297 5490561 -46023023 + (TA)n Simple_repeat Simple_repeat 1 244 0 288 127 0 84 chrY 5490575 5490717 -46022867 + (TA)n Simple_repeat Simple_repeat 1 130 0 471 88 10 83 chrY 5490733 5490925 -46022659 + (TA)n Simple_repeat Simple_repeat 1 178 0 434 109 8 88 chrY 5491177 5491655 -46021929 + (TA)n Simple_repeat Simple_repeat 1 439 0 505 304 87 11 chrY 5491916 5492100 -46021484 - MIR SINE MIR -25 237 40 355 303 35 28 chrY 5492313 5492338 -46021246 + L1MDa LINE L1 2514 2537 -4003 3370 130 41 5 chrY 5492338 5492898 -46020686 + LTR19B LTR ERV1 1 580 0 355 303 35 28 chrY 5492898 5493189 -46020395 + L1MDa LINE L1 2537 2859 -3681 730 273 119 61 chrY 5493253 5493664 -46019920 + MLT2B1 LTR ERVL 5 439 -81 222 156 0 0 chrY 5493672 5493717 -46019867 + (TG)n Simple_repeat Simple_repeat 2 46 0 321 278 134 56 chrY 5495831 5496137 -46017447 + L2 LINE L2 2196 2525 -789 2670 42 0 3 chrY 5496336 5496648 -46016936 + AluY SINE Alu 1 311 0 299 301 55 35 chrY 5498087 5498343 -46015241 + L1M4 LINE L1 5257 5517 -657 24 0 0 0 chrY 5498462 5498486 -46015098 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chrY 5498625 5498655 -46014929 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrY 5498748 5498777 -46014807 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chrY 5500396 5500430 -46013154 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chrY 5500572 5500611 -46012973 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chrY 5500717 5500738 -46012846 + AT_rich Low_complexity Low_complexity 1 21 0 3917 166 38 24 chrY 5500932 5501727 -46011857 + L1PA16 LINE L1 5359 6164 -2 21 0 0 0 chrY 5501727 5501748 -46011836 + AT_rich Low_complexity Low_complexity 1 21 0 594 235 0 0 chrY 5504209 5504328 -46009256 + MER41E LTR ERV1 1 119 -393 2261 159 53 127 chrY 5504711 5505446 -46008138 - LTR1 LTR ERV1 -104 681 1 252 231 39 0 chrY 5505621 5505673 -46007911 - LTR33A LTR ERVL -339 184 131 381 162 0 0 chrY 5505723 5505791 -46007793 + (CTA)n Simple_repeat Simple_repeat 1 68 0 2254 81 0 3 chrY 5505792 5506077 -46007507 - AluY SINE Alu -26 285 2 3296 84 0 2 chrY 5506447 5506897 -46006687 - L1PA5 LINE L1 -1795 4351 3903 7377 78 7 0 chrY 5506897 5508703 -46004881 + L1PA5 LINE L1 4354 6139 -15 526 252 0 0 chrY 5508854 5508969 -46004615 + MER41E LTR ERV1 1 115 -397 2689 163 25 94 chrY 5509338 5510085 -46003499 - LTR1 LTR ERV1 -89 696 1 260 231 65 145 chrY 5510257 5510443 -46003141 - LTR33A LTR ERVL -344 179 9 196 178 67 0 chrY 5510704 5510749 -46002835 - L2 LINE L2 -4 3309 3262 379 262 12 0 chrY 5511284 5511368 -46002216 - FRAM SINE Alu -13 153 69 186 43 0 0 chrY 5511404 5511427 -46002157 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 541 162 10 10 chrY 5511438 5511537 -46002047 - FLAM_C SINE Alu -34 109 11 22 0 0 0 chrY 5513497 5513519 -46000065 + AT_rich Low_complexity Low_complexity 1 22 0 330 153 0 0 chrY 5513754 5513813 -45999771 + CT-rich Low_complexity Low_complexity 1 59 0 2051 123 3 0 chrY 5515047 5515364 -45998220 - L1PA6 LINE L1 0 6154 5837 635 121 10 0 chrY 5515365 5515464 -45998120 + L1P3 LINE L1 5433 5532 -622 271 300 64 21 chrY 5519654 5519794 -45993790 + MLT1F LTR MaLR 370 515 -27 1271 252 3 0 chrY 5520262 5520571 -45993013 + AluSx SINE Alu 1 310 -2 1416 194 0 31 chrY 5520622 5521049 -45992535 + AluSx SINE Alu 12 488 -48 510 17 0 0 chrY 5521049 5521108 -45992476 + (GAGAA)n Simple_repeat Simple_repeat 1 59 0 1416 194 0 31 chrY 5521108 5521156 -45992428 + AluSx SINE Alu 488 536 0 471 263 105 7 chrY 5521751 5521903 -45991681 - FRAM SINE Alu -9 167 1 252 325 8 26 chrY 5522021 5522138 -45991446 + MLT1E LTR MaLR 361 475 -118 274 176 20 0 chrY 5522180 5522231 -45991353 + L1MC/D LINE L1 5760 5811 -1997 238 301 19 0 chrY 5522227 5522280 -45991304 - L1P LINE L1 -2579 3567 3517 * 643 11 35 11 chrY 5522280 5522367 -45991217 + (TTTTA)n Simple_repeat Simple_repeat 2 90 0 238 301 19 0 chrY 5522367 5522416 -45991168 - L1P LINE L1 -2629 3517 3463 838 341 78 32 chrY 5523181 5523744 -45989840 - L1M3b LINE L1 -5675 606 18 1504 199 3 28 chrY 5523784 5524099 -45989485 + AluSg SINE Alu 1 308 0 240 306 18 36 chrY 5524200 5524311 -45989273 - L1M3de LINE L1 -5898 755 647 1455 211 58 50 chrY 5524322 5524738 -45988846 - MSTB LTR MaLR -7 419 1 386 346 59 72 chrY 5524768 5525074 -45988510 - L1M3de LINE L1 -5217 1436 1128 1925 157 0 3 chrY 5525074 5525373 -45988211 + AluSx SINE Alu 1 298 -14 386 346 59 72 chrY 5525373 5525656 -45987928 - L1M3de LINE L1 -5525 1128 605 24 32 0 0 chrY 5525902 5525933 -45987651 + AT_rich Low_complexity Low_complexity 1 31 0 305 192 55 0 chrY 5525933 5526006 -45987578 - L1MA4 LINE L1 -11 6289 6213 485 246 36 56 chrY 5526015 5526171 -45987413 + L1MA3 LINE L1 6019 6172 -133 1206 241 0 30 chrY 5526171 5526474 -45987110 + AluJo SINE Alu 2 295 -17 485 246 36 56 chrY 5526474 5526512 -45987072 + L1MA3 LINE L1 6172 6209 -96 1586 198 3 14 chrY 5526547 5526835 -45986749 - AluSx SINE Alu -25 287 3 1308 204 38 4 chrY 5527322 5527587 -45985997 + AluSg SINE Alu 15 288 -22 1158 226 109 19 chrY 5529509 5529941 -45983643 + L1MB5 LINE L1 5254 5746 -428 1079 255 68 9 chrY 5529967 5530292 -45983292 + L1MB5 LINE L1 5818 6161 -13 21 71 0 0 chrY 5530692 5530734 -45982850 + AT_rich Low_complexity Low_complexity 1 42 0 16222 64 20 0 chrY 5531387 5534249 -45979335 + L1PA4 LINE L1 3259 6152 -3 27 0 0 0 chrY 5534476 5534503 -45979081 + AT_rich Low_complexity Low_complexity 1 27 0 837 301 33 18 chrY 5534611 5534883 -45978701 + AluJo SINE Alu 1 276 -36 290 98 20 0 chrY 5536311 5536362 -45977222 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1629 170 4 4 chrY 5536362 5536638 -45976946 - AluSg SINE Alu -32 278 3 2040 142 0 0 chrY 5538651 5538954 -45974630 + AluSc SINE Alu 1 303 -6 1835 164 10 7 chrY 5539424 5539723 -45973861 - AluSc SINE Alu -9 300 1 26 30 0 0 chrY 5541006 5541039 -45972545 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chrY 5541485 5541520 -45972064 + AT_rich Low_complexity Low_complexity 1 35 0 816 254 27 9 chrY 5541588 5541812 -45971772 - AluJb SINE Alu -82 230 3 318 190 0 6 chrY 5542230 5542298 -45971286 + Charlie3 DNA MER1_type 2629 2699 -11 548 235 0 0 chrY 5542309 5542407 -45971177 - AluJ/FLAM SINE Alu -212 100 3 1636 179 7 3 chrY 5547441 5547726 -45965858 - AluSx SINE Alu -26 286 1 1685 177 7 36 chrY 5549503 5549595 -45963989 - AluSx SINE Alu -16 296 203 2533 45 7 3 chrY 5549595 5549903 -45963681 - AluY SINE Alu -2 309 1 1685 177 7 36 chrY 5549903 5550115 -45963469 - AluSx SINE Alu -109 203 1 1147 221 14 11 chrY 5550115 5550400 -45963184 - AluJo SINE Alu -14 298 13 868 264 23 63 chrY 5551343 5551734 -45961850 - L1M4 LINE L1 -421 5753 5381 22 0 0 0 chrY 5551812 5551834 -45961750 + AT_rich Low_complexity Low_complexity 1 22 0 252 263 23 58 chrY 5551942 5552113 -45961471 - L1MB2 LINE L1 -1 6170 6006 2907 136 0 7 chrY 5552184 5552610 -45960974 - L1PA8A LINE L1 -1 6130 5708 364 287 37 7 chrY 5552649 5552785 -45960799 - L1M4 LINE L1 -1968 4178 4039 1239 177 0 5 chrY 5552801 5552999 -45960585 - MER107 DNA MER1_type 0 197 1 311 247 139 25 chrY 5552999 5553157 -45960427 + L1M4 LINE L1 4965 5140 -1006 375 286 157 43 chrY 5553490 5553815 -45959769 + L1MDa LINE L1 2261 2622 -3918 348 286 24 0 chrY 5553896 5553980 -45959604 + L1MD2 LINE L1 6014 6099 -260 22 0 0 0 chrY 5554130 5554152 -45959432 + AT_rich Low_complexity Low_complexity 1 22 0 387 298 148 16 chrY 5554276 5554581 -45959003 + L1MC4a LINE L1 6276 6620 -1188 5451 200 14 5 chrY 5554645 5555754 -45957830 - L1P LINE L1 -1902 4244 3126 21 0 0 0 chrY 5555754 5555775 -45957809 + AT_rich Low_complexity Low_complexity 1 21 0 1274 174 60 23 chrY 5556176 5556475 -45957109 + L1P LINE L1 2755 3064 -3082 2811 164 14 116 chrY 5556475 5556861 -45956723 + LTR25 LTR ERV1 1 292 -502 198 0 0 0 chrY 5556861 5556883 -45956701 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2811 164 14 116 chrY 5556883 5557161 -45956423 + LTR25 LTR ERV1 292 597 -197 209 129 71 12 chrY 5557165 5557250 -45956334 + (TA)n Simple_repeat Simple_repeat 2 91 0 26 0 0 0 chrY 5557488 5557514 -45956070 + AT_rich Low_complexity Low_complexity 1 26 0 1603 159 0 8 chrY 5557900 5558157 -45955427 + AluSg SINE Alu 1 255 -55 862 244 35 18 chrY 5558256 5558591 -45954993 + L1MC1 LINE L1 4457 4800 -1346 2156 239 109 19 chrY 5558608 5559456 -45954128 + L1MC1 LINE L1 5333 6311 -22 332 234 72 48 chrY 5559473 5559640 -45953944 - MER96B DNA MER1_type? -65 352 182 1128 153 254 4 chrY 5559641 5559877 -45953707 - LTR12 LTR ERV1 -376 338 44 231 209 0 0 chrY 5559877 5559920 -45953664 - LTR30 LTR ERV1 -679 43 1 1456 284 23 37 chrY 5559928 5560837 -45952747 - MER61B-int LTR ERV1 -1567 6189 4894 2066 152 0 0 chrY 5560837 5561134 -45952450 + AluSc SINE Alu 1 297 -12 1456 284 23 37 chrY 5561134 5561422 -45952162 - MER61B-int LTR ERV1 -2862 4894 4604 545 215 19 0 chrY 5561659 5561766 -45951818 - MER2 DNA MER2_type -235 110 2 337 335 32 36 chrY 5561894 5562145 -45951439 - L1M4 LINE L1 -1846 4300 4051 403 165 35 12 chrY 5562374 5562459 -45951125 + MSTA LTR MaLR 3 89 -339 6291 133 137 116 chrY 5562459 5564120 -45949464 + pTR5 LTR ERV1 743 2438 0 1010 227 144 11 chrY 5564142 5564406 -45949178 + MSTA LTR MaLR 130 428 0 331 300 151 29 chrY 5564513 5565210 -45948374 - L1M4 LINE L1 -2509 3637 2856 35 24 0 0 chrY 5565218 5565260 -45948324 + AT_rich Low_complexity Low_complexity 1 42 0 675 82 0 31 chrY 5565283 5565381 -45948203 - L1PA4 LINE L1 -2 6153 6059 1354 65 0 0 chrY 5565381 5565551 -45948033 + L1PA4 LINE L1 5711 5880 -275 32 95 0 0 chrY 5566076 5566171 -45947413 + AT_rich Low_complexity Low_complexity 1 95 0 2071 82 0 4 chrY 5566299 5566566 -45947018 + AluY SINE Alu 23 288 -23 2146 160 17 3 chrY 5567531 5567887 -45945697 - MLT2A1 LTR ERVL -83 361 1 2837 116 12 16 chrY 5567887 5568317 -45945267 - HERVL-A1 LTR ERVL 0 5654 5227 1426 176 29 47 chrY 5568366 5568670 -45944914 - MER61B-int LTR ERV1 -2934 2283 1986 2378 67 17 0 chrY 5568670 5568968 -45944616 - AluY SINE Alu -8 303 1 1426 176 29 47 chrY 5568968 5569044 -45944540 - MER61B-int LTR ERV1 -3231 1986 1910 249 33 0 0 chrY 5569066 5569096 -45944488 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 504 256 0 16 chrY 5569113 5569234 -45944350 - MER61B-int LTR ERV1 -4819 398 280 591 150 47 63 chrY 5569295 5569422 -45944162 - MER61B-int LTR ERV1 -5074 143 19 724 262 21 5 chrY 5569439 5569556 -45944028 - MER61B LTR ERV1 0 425 302 183 42 0 0 chrY 5569556 5569580 -45944004 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 724 262 21 5 chrY 5569580 5569653 -45943931 - MER61B LTR ERV1 -123 302 232 30535 38 3 0 chrY 5569721 5574171 -45939413 - L1PA3 LINE L1 0 6155 1695 6095 72 1 1 chrY 5574190 5574993 -45938591 + L1PA3 LINE L1 900 1702 -4444 494 286 32 13 chrY 5574993 5575452 -45938132 - BSR/Beta Satellite Satellite -7 467 1 1296 266 16 9 chrY 5575465 5576120 -45937464 - BSR/Beta Satellite Satellite -44 659 1 596 269 21 34 chrY 5576410 5577136 -45936448 - BSR/Beta Satellite Satellite 0 716 1 2855 19 0 0 chrY 5577166 5577477 -45936107 - AluY SINE Alu 0 311 1 1006 260 33 57 chrY 5577740 5578375 -45935209 - BSR/Beta Satellite Satellite -21 619 1 525 285 22 23 chrY 5578495 5578880 -45934704 - BSR/Beta Satellite Satellite 0 384 1 580 267 21 36 chrY 5578892 5579537 -45934047 - BSR/Beta Satellite Satellite 0 635 1 461 316 0 0 chrY 5579604 5579729 -45933855 - BSR/Beta Satellite Satellite 0 125 1 860 327 6 9 chrY 5579744 5580068 -45933516 - BSR/Beta Satellite Satellite -48 331 9 934 282 6 58 chrY 5580085 5580429 -45933155 - BSR/Beta Satellite Satellite -9 370 45 268 253 35 23 chrY 5580443 5580530 -45933054 - BSR/Beta Satellite Satellite -46 96 9 519 138 52 17 chrY 5580552 5580726 -45932858 + (TA)n Simple_repeat Simple_repeat 1 180 0 1145 260 24 16 chrY 5580792 5581573 -45932011 - BSR/Beta Satellite Satellite -69 786 1 437 335 17 0 chrY 5581661 5581829 -45931755 - BSR/Beta Satellite Satellite -8 170 1 572 272 17 38 chrY 5581880 5582660 -45930924 - BSR/Beta Satellite Satellite -44 763 1 642 239 10 58 chrY 5582826 5583151 -45930433 - BSR/Beta Satellite Satellite 0 309 1 941 302 29 28 chrY 5583179 5584008 -45929576 - BSR/Beta Satellite Satellite -4 829 1 629 228 0 0 chrY 5584122 5584245 -45929339 - BSR/Beta Satellite Satellite -9 133 11 589 290 14 23 chrY 5584257 5584544 -45929040 - BSR/Beta Satellite Satellite 0 284 1 1216 281 25 0 chrY 5584580 5584907 -45928677 - BSR/Beta Satellite Satellite -44 335 1 303 352 16 8 chrY 5585012 5585137 -45928447 - BSR/Beta Satellite Satellite -15 137 12 238 278 35 7 chrY 5585208 5585289 -45928295 - BSR/Beta Satellite Satellite -68 148 1 1217 238 0 0 chrY 5585465 5585717 -45927867 - BSR/Beta Satellite Satellite -106 273 22 475 279 23 33 chrY 5585808 5586601 -45926983 - BSR/Beta Satellite Satellite -3 785 1 492 272 3 25 chrY 5586616 5586886 -45926698 - BSR/Beta Satellite Satellite 0 263 1 1095 300 28 3 chrY 5586958 5587765 -45925819 - BSR/Beta Satellite Satellite -16 827 1 720 261 26 36 chrY 5587840 5588605 -45924979 - BSR/Beta Satellite Satellite -18 757 1 1253 280 20 44 chrY 5588652 5589576 -45924008 - BSR/Beta Satellite Satellite -9 902 1 475 295 17 32 chrY 5589610 5590033 -45923551 - BSR/Beta Satellite Satellite 0 416 1 545 295 12 4 chrY 5590047 5590247 -45923337 - BSR/Beta Satellite Satellite -25 201 1 970 266 21 37 chrY 5590258 5590534 -45923050 - BSR/Beta Satellite Satellite -42 271 1 273 358 27 14 chrY 5590562 5590710 -45922874 - BSR/Beta Satellite Satellite -1 151 2 670 261 5 25 chrY 5590998 5591281 -45922303 - BSR/Beta Satellite Satellite 0 277 1 447 306 4 16 chrY 5591304 5591503 -45922081 - BSR/Beta Satellite Satellite -10 196 1 264 352 0 0 chrY 5591578 5591683 -45921901 - BSR/Beta Satellite Satellite -36 106 2 930 315 14 15 chrY 5591755 5592391 -45921193 - BSR/Beta Satellite Satellite -49 635 1 506 238 28 28 chrY 5592506 5592832 -45920752 - BSR/Beta Satellite Satellite -1 326 1 1149 270 17 36 chrY 5592843 5593246 -45920338 - BSR/Beta Satellite Satellite -1 2025 1616 1611 238 69 19 chrY 5593246 5593709 -45919875 + LTR22B LTR ERVK 5 490 -2 1149 270 17 36 chrY 5593709 5594907 -45918677 - BSR/Beta Satellite Satellite -410 1616 1 568 224 31 60 chrY 5594961 5595389 -45918195 - BSR/Beta Satellite Satellite 0 415 1 869 291 31 17 chrY 5595439 5595728 -45917856 - BSR/Beta Satellite Satellite -64 315 23 528 317 15 3 chrY 5595818 5596088 -45917496 - BSR/Beta Satellite Satellite -2 273 1 517 260 33 29 chrY 5596100 5596805 -45916779 - BSR/Beta Satellite Satellite 0 707 1 1153 300 15 4 chrY 5596934 5597713 -45915871 - BSR/Beta Satellite Satellite -9 787 1 1928 147 7 3 chrY 5597832 5598125 -45915459 + AluY SINE Alu 1 294 -17 1217 274 39 16 chrY 5598132 5598968 -45914616 - BSR/Beta Satellite Satellite -15 855 1 268 344 15 8 chrY 5599031 5599162 -45914422 - BSR/Beta Satellite Satellite -7 145 14 611 269 15 31 chrY 5599316 5600103 -45913481 - BSR/Beta Satellite Satellite -11 774 1 493 282 32 36 chrY 5600152 5600455 -45913129 - BSR/Beta Satellite Satellite -4 301 1 1255 264 31 12 chrY 5600481 5600818 -45912766 - BSR/Beta Satellite Satellite -49 343 1 944 278 19 20 chrY 5600909 5602491 -45911093 - BSR/Beta Satellite Satellite -46 1581 1 1209 268 16 26 chrY 5602507 5603742 -45909842 - BSR/Beta Satellite Satellite -4 1222 1 1665 160 7 29 chrY 5603806 5604087 -45909497 - AluSg SINE Alu -35 275 1 1169 283 5 7 chrY 5604109 5604888 -45908696 - BSR/Beta Satellite Satellite -1 777 1 446 284 24 10 chrY 5604968 5605200 -45908384 - BSR/Beta Satellite Satellite -11 235 1 1226 281 20 7 chrY 5605214 5605710 -45907874 - BSR/Beta Satellite Satellite -47 502 1 286 343 14 63 chrY 5605813 5605956 -45907628 - BSR/Beta Satellite Satellite -15 137 2 1126 298 12 21 chrY 5606097 5607625 -45905959 - BSR/Beta Satellite Satellite -58 1513 1 632 275 15 30 chrY 5607697 5608935 -45904649 - BSR/Beta Satellite Satellite -4 1219 1 1022 280 52 11 chrY 5608972 5609313 -45904271 - BSR/Beta Satellite Satellite -46 354 1 7004 87 2 0 chrY 5609313 5610544 -45903040 + L1PA6 LINE L1 4922 6154 0 664 296 0 0 chrY 5610612 5610781 -45902803 - BSR/Beta Satellite Satellite -13 366 198 1876 157 0 7 chrY 5610843 5611142 -45902442 - AluSg1 SINE Alu -4 305 9 425 266 24 8 chrY 5611153 5611277 -45902307 - BSR/Beta Satellite Satellite -219 160 35 589 262 9 14 chrY 5611347 5611620 -45901964 - BSR/Beta Satellite Satellite 0 271 1 668 279 74 17 chrY 5611626 5611924 -45901660 - L1 LINE L1 -1311 4835 4521 1110 209 5 5 chrY 5611953 5612173 -45901411 + AluSc SINE Alu 1 220 -89 667 266 96 53 chrY 5612205 5612375 -45901209 - L1M4c LINE L1 -3264 3118 2957 2534 57 0 10 chrY 5612375 5612689 -45900895 - AluY SINE Alu 0 311 1 667 266 96 53 chrY 5612689 5613164 -45900420 - L1M4c LINE L1 -3425 2957 2445 359 313 58 24 chrY 5613188 5613482 -45900102 - L1M4c LINE L1 -4723 1661 1358 238 209 0 0 chrY 5613877 5613920 -45899664 - L1M4c LINE L1 -5192 1121 1079 1640 193 24 0 chrY 5613966 5614439 -45899145 - AluSq SINE Alu 0 313 12 442 274 22 27 chrY 5616404 5616885 -45896699 + BSR/Beta Satellite Satellite 1 478 -51 652 284 29 83 chrY 5616953 5617211 -45896373 + BSR/Beta Satellite Satellite 29 265 -114 1498 172 21 31 chrY 5617211 5617501 -45896083 - AluY SINE Alu -14 297 11 652 284 29 83 chrY 5617501 5617591 -45895993 + BSR/Beta Satellite Satellite 265 358 -21 1088 273 25 17 chrY 5617611 5619143 -45894441 + BSR/Beta Satellite Satellite 1 1544 -14 1225 283 6 17 chrY 5619251 5619830 -45893754 + BSR/Beta Satellite Satellite 1 572 -43 475 277 56 27 chrY 5619885 5620138 -45893446 + BSR/Beta Satellite Satellite 1 245 -348 414 0 0 0 chrY 5620138 5620184 -45893400 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 475 277 56 27 chrY 5620184 5620407 -45893177 + BSR/Beta Satellite Satellite 245 537 -56 1242 286 13 22 chrY 5620436 5621439 -45892145 + BSR/Beta Satellite Satellite 1 994 -50 1181 270 25 12 chrY 5621453 5621779 -45891805 + BSR/Beta Satellite Satellite 41 370 -9 730 346 4 4 chrY 5621797 5622241 -45891343 + BSR/Beta Satellite Satellite 1 444 -53 254 49 0 24 chrY 5622258 5622299 -45891285 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 548 265 19 30 chrY 5622301 5622700 -45890884 + BSR/Beta Satellite Satellite 1 394 0 324 259 9 62 chrY 5622764 5622955 -45890629 + BSR/Beta Satellite Satellite 1 180 -5 1412 296 8 2 chrY 5623049 5623824 -45889760 + BSR/Beta Satellite Satellite 1 779 -3 593 269 22 19 chrY 5623912 5624962 -45888622 + BSR/Beta Satellite Satellite 1 1052 -7 1298 256 31 20 chrY 5625047 5625650 -45887934 + BSR/Beta Satellite Satellite 1 609 -53 311 370 16 0 chrY 5625917 5626044 -45887540 + BSR/Beta Satellite Satellite 10 138 -14 1656 185 4 0 chrY 5626080 5626356 -45887228 + AluJo SINE Alu 15 291 -21 493 253 16 55 chrY 5626418 5626600 -45886984 - L1MC4a LINE L1 -1941 5867 5693 1329 263 28 4 chrY 5626669 5627093 -45886491 + BSR/Beta Satellite Satellite 1 433 0 532 278 24 18 chrY 5627147 5627529 -45886055 + BSR/Beta Satellite Satellite 1 384 0 12165 55 0 1 chrY 5631212 5632712 -45880872 - L1PA4 LINE L1 -841 5305 3807 6943 60 1 0 chrY 5632712 5633539 -45880045 + L1PA4 LINE L1 5325 6153 -2 559 300 16 25 chrY 5636747 5637212 -45876372 + BSR/Beta Satellite Satellite 1 461 -43 1375 288 25 5 chrY 5637283 5637947 -45875637 + BSR/Beta Satellite Satellite 1 677 -47 631 256 39 24 chrY 5638120 5639165 -45874419 + BSR/Beta Satellite Satellite 1 1060 0 1147 269 19 34 chrY 5639255 5640738 -45872846 + BSR/Beta Satellite Satellite 1 1460 -37 299 355 18 0 chrY 5640883 5641046 -45872538 + BSR/Beta Satellite Satellite 1 165 -20 1227 237 26 8 chrY 5641151 5641591 -45871993 + BSR/Beta Satellite Satellite 1 447 -14 516 275 21 26 chrY 5641632 5642689 -45870895 + BSR/Beta Satellite Satellite 1 1051 -6 1082 293 26 20 chrY 5642786 5644394 -45869190 + BSR/Beta Satellite Satellite 1 1617 -51 259 336 32 8 chrY 5644425 5644550 -45869034 + BSR/Beta Satellite Satellite 22 149 -3 1235 259 26 2 chrY 5644672 5645097 -45868487 + BSR/Beta Satellite Satellite 1 435 0 451 285 13 14 chrY 5645109 5645490 -45868094 + BSR/Beta Satellite Satellite 1 380 -44 1132 287 9 6 chrY 5645555 5646240 -45867344 + BSR/Beta Satellite Satellite 1 686 -44 628 262 17 18 chrY 5646313 5647318 -45866266 + BSR/Beta Satellite Satellite 1 1003 -43 1126 286 8 16 chrY 5647449 5648066 -45865518 + BSR/Beta Satellite Satellite 1 612 -15 295 341 0 8 chrY 5648088 5648211 -45865373 + BSR/Beta Satellite Satellite 3 124 -18 491 271 5 23 chrY 5648353 5648974 -45864610 + BSR/Beta Satellite Satellite 1 609 -19 358 342 26 21 chrY 5649137 5649339 -45864245 + BSR/Beta Satellite Satellite 1 202 -7 1251 263 18 27 chrY 5649359 5649608 -45863976 + BSR/Beta Satellite Satellite 1 251 -905 2167 109 0 3 chrY 5649608 5649901 -45863683 + AluY SINE Alu 1 292 -19 1251 263 18 27 chrY 5649901 5650526 -45863058 + BSR/Beta Satellite Satellite 251 1156 0 901 303 12 11 chrY 5650561 5651479 -45862105 + BSR/Beta Satellite Satellite 1 918 0 228 281 26 61 chrY 5651491 5651605 -45861979 + BSR/Beta Satellite Satellite 33 142 0 321 310 21 17 chrY 5651617 5651788 -45861796 + BSR/Beta Satellite Satellite 1 171 -44 2292 48 3 3 chrY 5651795 5652084 -45861500 - L1PA4 LINE L1 -3 6152 5864 367 276 78 17 chrY 5652094 5652341 -45861243 + BSR/Beta Satellite Satellite 1 262 -7 1154 271 9 5 chrY 5652517 5653268 -45860316 + BSR/Beta Satellite Satellite 1 753 -47 384 274 0 0 chrY 5653357 5653461 -45860123 + BSR/Beta Satellite Satellite 1 104 -62 549 277 28 19 chrY 5653494 5654377 -45859207 + BSR/Beta Satellite Satellite 1 890 0 1244 261 13 0 chrY 5654465 5654768 -45858816 + BSR/Beta Satellite Satellite 19 325 -54 537 293 7 12 chrY 5654863 5655534 -45858050 + BSR/Beta Satellite Satellite 1 667 -15 657 226 11 71 chrY 5655565 5655922 -45857662 + BSR/Beta Satellite Satellite 1 335 -2 1184 296 19 11 chrY 5656137 5656862 -45856722 + BSR/Beta Satellite Satellite 1 730 -17 1666 188 7 10 chrY 5656871 5657169 -45856415 + AluSq SINE Alu 1 297 -16 627 263 14 15 chrY 5657202 5657579 -45856005 + BSR/Beta Satellite Satellite 1 376 0 870 303 9 19 chrY 5657618 5657942 -45855642 + BSR/Beta Satellite Satellite 43 363 -16 729 326 7 0 chrY 5657962 5658250 -45855334 + BSR/Beta Satellite Satellite 5 294 -85 400 275 35 0 chrY 5658298 5658415 -45855169 + BSR/Beta Satellite Satellite 1 121 -44 529 265 18 21 chrY 5658478 5659573 -45854011 + BSR/Beta Satellite Satellite 1 1091 -46 962 277 14 14 chrY 5659638 5659916 -45853668 + BSR/Beta Satellite Satellite 21 298 -81 334 302 25 25 chrY 5660000 5660177 -45853407 + BSR/Beta Satellite Satellite 1 177 -15 642 260 16 33 chrY 5660456 5661080 -45852504 + BSR/Beta Satellite Satellite 1 613 -19 902 311 16 5 chrY 5661234 5661661 -45851923 + BSR/Beta Satellite Satellite 1 432 -49 403 260 13 27 chrY 5661724 5661891 -45851693 + BSR/Beta Satellite Satellite 1 164 -21 1560 268 68 12 chrY 5661897 5662911 -45850673 - L1M3 LINE L1 -702 5481 4414 1477 244 27 10 chrY 5662930 5663418 -45850166 + L1M3 LINE L1 3905 4400 -1746 1526 236 57 17 chrY 5663588 5663875 -45849709 + MER61B LTR ERV1 1 310 -115 207 0 0 0 chrY 5663875 5663898 -45849686 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1526 236 57 17 chrY 5663898 5664016 -45849568 + MER61B LTR ERV1 310 422 -3 527 140 61 35 chrY 5664027 5664141 -45849443 + MER61B-int LTR ERV1 14 130 -5087 2092 211 32 29 chrY 5664218 5664776 -45848808 + MER61B-int LTR ERV1 280 839 -4378 1407 160 11 0 chrY 5664777 5665039 -45848545 + MER61B-int LTR ERV1 944 1208 -4009 10011 158 25 13 chrY 5665046 5667099 -45846485 + MER61B-int LTR ERV1 1571 3522 -1695 4963 196 41 25 chrY 5667082 5668218 -45845366 + MER61B-int LTR ERV1 4060 5213 -4 * 2221 194 7 16 chrY 5668221 5668648 -45844936 + MER61B LTR ERV1 1 423 -2 283 298 133 0 chrY 5668657 5668845 -45844739 - L1 LINE L1 -1272 4874 4662 1344 234 4 0 chrY 5668887 5669148 -45844436 + AluJb SINE Alu 24 285 -27 232 286 60 43 chrY 5669331 5669516 -45844068 - L1 LINE L1 -3312 2834 2647 385 236 85 113 chrY 5669527 5670021 -45843563 - L1M4 LINE L1 -1308 3499 895 366 200 1 0 chrY 5670452 5670532 -45843052 - AluS SINE Alu -3 297 227 562 258 0 0 chrY 5670553 5670677 -45842907 - AluSq/x SINE Alu -180 133 10 1318 225 20 43 chrY 5671601 5671948 -45841636 - LTR32 LTR ERVL -21 450 112 23424 55 5 2 chrY 5671985 5675801 -45837783 - L1PA4 LINE L1 -2 6153 2327 1688 194 7 0 chrY 5675808 5676097 -45837487 - AluSp SINE Alu -22 291 1 306 276 38 48 chrY 5676110 5676215 -45837369 - LTR32 LTR ERVL -353 118 15 21 36 0 0 chrY 5676831 5676859 -45836725 + AT_rich Low_complexity Low_complexity 1 28 0 1905 167 6 13 chrY 5677473 5677785 -45835799 + AluY SINE Alu 1 310 -1 1539 183 38 7 chrY 5679737 5680027 -45833557 - AluSc SINE Alu -9 300 2 6356 246 174 2 chrY 5680067 5681776 -45831808 + L1PA12 LINE L1 1 2003 -5578 1314 305 24 0 chrY 5681782 5682159 -45831425 + L1PA13 LINE L1 347 732 -6055 1290 252 119 17 chrY 5682172 5682751 -45830833 + L1PA13 LINE L1 2517 3154 -3643 1907 177 3 0 chrY 5684509 5684819 -45828765 + AluSq SINE Alu 1 311 -2 236 167 0 56 chrY 5684881 5684935 -45828649 + L1M4c LINE L1 1079 1129 -5184 247 383 4 4 chrY 5685346 5685576 -45828008 + L1M4c LINE L1 1370 1599 -4785 2774 179 32 8 chrY 5685587 5686175 -45827409 - LTR10E LTR ERV1 -31 602 1 288 65 22 0 chrY 5686185 5686231 -45827353 + L1M2 LINE L1 2480 2526 -4323 390 314 91 35 chrY 5686257 5686859 -45826725 + L1M4c LINE L1 2445 3080 -3302 1500 221 7 3 chrY 5686883 5687182 -45826402 - AluSc SINE Alu -9 300 1 342 245 114 41 chrY 5687209 5687499 -45826085 + L1 LINE L1 4522 4832 -1314 1026 295 21 10 chrY 5687510 5688524 -45825060 + BSR/Beta Satellite Satellite 1 1025 -44 404 299 16 22 chrY 5688554 5688917 -45824667 + BSR/Beta Satellite Satellite 1 360 -8 2787 20 0 0 chrY 5688917 5689263 -45824321 - L1P LINE L1 -934 5212 4867 4878 23 2 0 chrY 5689263 5689829 -45823755 + L1PA2 LINE L1 5582 6150 -5 21 0 0 0 chrY 5689832 5689853 -45823731 + AT_rich Low_complexity Low_complexity 1 21 0 450 123 27 0 chrY 5689877 5689950 -45823634 + MLT1A1 LTR MaLR 243 317 -48 539 252 12 26 chrY 5689977 5690820 -45822764 + BSR/Beta Satellite Satellite 1 831 -53 796 254 0 0 chrY 5690961 5691150 -45822434 + BSR/Beta Satellite Satellite 21 209 -170 1908 135 56 5 chrY 5691169 5692919 -45820665 + L1PA7 LINE L1 4170 6153 -1 420 257 0 0 chrY 5692919 5693043 -45820541 + BSR/Beta Satellite Satellite 1 124 -47 289 331 23 15 chrY 5693096 5693226 -45820358 + BSR/Beta Satellite Satellite 4 134 -8 453 262 19 26 chrY 5693309 5693935 -45819649 + BSR/Beta Satellite Satellite 1 621 -15 430 227 37 0 chrY 5693984 5694137 -45819447 + BSR/Beta Satellite Satellite 1 158 0 1090 273 17 7 chrY 5694234 5694534 -45819050 + BSR/Beta Satellite Satellite 28 330 -49 474 286 32 20 chrY 5694603 5694979 -45818605 + BSR/Beta Satellite Satellite 1 380 -25 586 256 22 27 chrY 5695047 5695329 -45818255 + BSR/Beta Satellite Satellite 1 280 -1 398 278 16 40 chrY 5695343 5695517 -45818067 + BSR/Beta Satellite Satellite 1 169 -29 1154 277 21 24 chrY 5695543 5695879 -45817705 + BSR/Beta Satellite Satellite 29 363 -16 797 338 6 6 chrY 5695903 5696223 -45817361 + BSR/Beta Satellite Satellite 9 328 -51 329 264 28 76 chrY 5696259 5696403 -45817181 + BSR/Beta Satellite Satellite 2 138 -4 422 262 36 24 chrY 5696419 5696649 -45816935 + BSR/Beta Satellite Satellite 1 232 -53 621 287 19 10 chrY 5696699 5697468 -45816116 + BSR/Beta Satellite Satellite 1 776 0 897 296 46 7 chrY 5697575 5697859 -45815725 + BSR/Beta Satellite Satellite 36 330 -49 539 306 11 24 chrY 5697896 5698307 -45815277 + BSR/Beta Satellite Satellite 1 405 -20 496 313 5 13 chrY 5698375 5699066 -45814518 + BSR/Beta Satellite Satellite 1 685 -21 354 333 28 7 chrY 5699223 5699364 -45814220 + BSR/Beta Satellite Satellite 3 146 -6 1217 275 40 8 chrY 5699455 5700256 -45813328 + BSR/Beta Satellite Satellite 1 826 -44 1292 306 8 4 chrY 5700328 5701105 -45812479 + BSR/Beta Satellite Satellite 1 779 -1 555 277 31 18 chrY 5701189 5702254 -45811330 + BSR/Beta Satellite Satellite 1 1079 -43 1049 324 4 6 chrY 5702388 5702748 -45810836 + BSR/Beta Satellite Satellite 1 359 -54 347 319 36 19 chrY 5702821 5703013 -45810571 + BSR/Beta Satellite Satellite 1 195 0 526 251 5 18 chrY 5703255 5703406 -45810178 + BSR/Beta Satellite Satellite 1 148 -52 1013 302 26 9 chrY 5703430 5703903 -45809681 + BSR/Beta Satellite Satellite 1 481 -21 614 281 27 20 chrY 5703995 5705011 -45808573 + BSR/Beta Satellite Satellite 1 1023 0 1282 282 19 0 chrY 5705101 5705446 -45808138 + BSR/Beta Satellite Satellite 1 351 -64 407 290 15 38 chrY 5705547 5705678 -45807906 + BSR/Beta Satellite Satellite 15 142 0 247 330 34 5 chrY 5705755 5705953 -45807631 + BSR/Beta Satellite Satellite 1 203 -11 620 325 10 12 chrY 5706069 5707033 -45806551 + BSR/Beta Satellite Satellite 1 961 -7 1156 286 26 19 chrY 5707054 5707925 -45805659 + BSR/Beta Satellite Satellite 1 876 -63 924 294 44 9 chrY 5707940 5708260 -45805324 + BSR/Beta Satellite Satellite 41 371 -8 1021 303 18 10 chrY 5708273 5708808 -45804776 + BSR/Beta Satellite Satellite 1 539 -35 602 230 27 46 chrY 5708857 5709651 -45803933 + BSR/Beta Satellite Satellite 1 778 -42 1089 296 17 28 chrY 5709728 5710121 -45803463 + BSR/Beta Satellite Satellite 1 397 -1192 2810 10 0 0 chrY 5710121 5710426 -45803158 - AluY SINE Alu -6 305 1 1089 296 17 28 chrY 5710426 5711293 -45802291 + BSR/Beta Satellite Satellite 397 1548 -41 1051 299 10 20 chrY 5711321 5712096 -45801488 + BSR/Beta Satellite Satellite 1 767 -35 603 278 21 27 chrY 5712167 5712893 -45800691 + BSR/Beta Satellite Satellite 1 721 -64 284 280 20 30 chrY 5712959 5713059 -45800525 + BSR/Beta Satellite Satellite 258 356 -23 484 274 0 0 chrY 5713155 5713268 -45800316 - BSR/Beta Satellite Satellite -14 128 16 475 242 33 39 chrY 5713281 5713434 -45800150 - BSR/Beta Satellite Satellite 0 152 1 792 280 6 0 chrY 5713447 5713742 -45799842 - BSR/Beta Satellite Satellite -44 296 1 625 293 20 25 chrY 5713868 5714625 -45798959 - BSR/Beta Satellite Satellite -1 753 1 371 309 0 40 chrY 5714652 5714778 -45798806 - BSR/Beta Satellite Satellite -5 137 17 423 165 139 0 chrY 5714781 5714860 -45798724 - AluSg/x SINE Alu -12 298 209 626 298 57 22 chrY 5714996 5715312 -45798272 - BSR/Beta Satellite Satellite -27 352 26 628 272 17 27 chrY 5715413 5716675 -45796909 - BSR/Beta Satellite Satellite -1 1249 1 1189 305 7 5 chrY 5716743 5717350 -45796234 - BSR/Beta Satellite Satellite -10 608 1 198 0 0 0 chrY 5717440 5717462 -45796122 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 27865 53 13 1 chrY 5717464 5721785 -45791799 - L1PA3 LINE L1 -9 6146 1776 392 319 0 0 chrY 5721788 5721904 -45791680 - BSR/Beta Satellite Satellite -14 128 13 5382 62 1 3 chrY 5721910 5722603 -45790981 + L1P LINE L1 1246 1937 -4209 1107 286 23 15 chrY 5722610 5723686 -45789898 - BSR/Beta Satellite Satellite -3 1084 1 486 288 20 34 chrY 5723846 5724563 -45789021 - BSR/Beta Satellite Satellite -1 706 1 505 310 15 25 chrY 5724621 5724987 -45788597 - BSR/Beta Satellite Satellite -4 362 1 758 320 40 0 chrY 5725045 5725323 -45788261 - BSR/Beta Satellite Satellite -50 329 41 582 285 30 12 chrY 5725433 5726399 -45787185 - BSR/Beta Satellite Satellite -2 983 1 1100 309 9 2 chrY 5726492 5726914 -45786670 - BSR/Beta Satellite Satellite -44 424 1 1252 259 22 12 chrY 5726934 5727254 -45786330 - BSR/Beta Satellite Satellite -16 363 41 1163 280 16 33 chrY 5727330 5729027 -45784557 - BSR/Beta Satellite Satellite -1 1668 1 577 255 24 25 chrY 5729062 5729440 -45784144 - BSR/Beta Satellite Satellite 0 622 10 1398 43 0 4 chrY 5729440 5729676 -45783908 + (TTC)n Simple_repeat Simple_repeat 1 235 0 1406 234 7 0 chrY 5729688 5729992 -45783592 - AluSg SINE Alu -2 308 3 889 299 38 12 chrY 5730001 5730480 -45783104 - BSR/Beta Satellite Satellite -44 491 1 323 380 21 0 chrY 5730576 5730718 -45782866 - BSR/Beta Satellite Satellite -7 145 1 477 264 38 25 chrY 5730862 5731235 -45782349 - BSR/Beta Satellite Satellite 0 377 1 507 267 11 32 chrY 5731254 5731471 -45782113 - BSR/Beta Satellite Satellite 0 212 1 281 358 22 0 chrY 5731518 5731655 -45781929 - BSR/Beta Satellite Satellite -2 140 1 1178 288 13 18 chrY 5731727 5732353 -45781231 - BSR/Beta Satellite Satellite -57 622 1 849 295 14 34 chrY 5732508 5734105 -45779479 - BSR/Beta Satellite Satellite -7 1564 1 637 271 14 25 chrY 5734269 5734852 -45778732 - BSR/Beta Satellite Satellite -3 576 1 1250 286 16 13 chrY 5735168 5735779 -45777805 - BSR/Beta Satellite Satellite -49 612 1 1091 288 11 27 chrY 5735907 5737456 -45776128 - BSR/Beta Satellite Satellite -44 1523 1 400 247 0 0 chrY 5737470 5737559 -45776025 - BSR/Beta Satellite Satellite -13 366 278 1771 170 7 3 chrY 5737568 5737862 -45775722 + AluY SINE Alu 1 295 -16 22 35 0 0 chrY 5737865 5737894 -45775690 + AT_rich Low_complexity Low_complexity 1 29 0 556 272 17 18 chrY 5737909 5738361 -45775223 - BSR/Beta Satellite Satellite 0 451 1 352 288 76 42 chrY 5738387 5738675 -45774909 - L1 LINE L1 -1332 4814 4517 684 194 16 8 chrY 5738692 5738821 -45774763 + AluSc SINE Alu 2 131 -178 5390 62 35 0 chrY 5738854 5739514 -45774070 - MER11D LTR ERVK 0 897 215 676 71 0 0 chrY 5739510 5739594 -45773990 - MER11D LTR ERVK -813 84 1 * 792 228 12 0 chrY 5739625 5739792 -45773792 + FRAM SINE Alu 1 40 0 331 297 62 0 chrY 5739796 5739941 -45773643 - L1 LINE L1 -3312 2834 2681 * 15132 78 8 17 chrY 5739938 5742045 -45771539 - L1P LINE L1 -1441 4705 2617 2666 239 82 36 chrY 5742042 5742980 -45770604 - L1PA13 LINE L1 -4396 2401 1417 * 333 415 34 8 chrY 5743003 5743268 -45770316 - L1PA13 LINE L1 -5529 1258 987 1412 306 76 4 chrY 5743355 5743815 -45769769 - L1PA13 LINE L1 -5956 831 339 * 5328 283 12 6 chrY 5743813 5745511 -45768073 - L1PA12 LINE L1 -5577 2004 20 28 0 0 0 chrY 5745531 5745559 -45768025 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrY 5746139 5746175 -45767409 + AT_rich Low_complexity Low_complexity 1 36 0 1293 184 5 0 chrY 5746724 5746947 -45766637 + AluSq SINE Alu 4 227 -86 21 0 0 0 chrY 5747523 5747544 -45766040 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chrY 5747731 5747757 -45765827 + AT_rich Low_complexity Low_complexity 1 26 0 3539 132 4 6 chrY 5748931 5749440 -45764144 - MER9 LTR ERVK 0 511 4 1283 202 151 4 chrY 5750346 5750604 -45762980 + AluSp SINE Alu 1 296 -7 1479 227 20 40 chrY 5750608 5750961 -45762623 + LTR32 LTR ERVL 124 469 -2 3903 185 18 9 chrY 5751663 5752516 -45761068 - MER61-int LTR ERV1 -1061 3954 2349 582 301 29 43 chrY 5752518 5752794 -45760790 - BSR/Beta Satellite Satellite -81 298 27 584 280 8 22 chrY 5752886 5753964 -45759620 - BSR/Beta Satellite Satellite -1 1063 1 563 342 40 4 chrY 5754015 5754290 -45759294 - BSR/Beta Satellite Satellite -90 289 5 905 304 22 13 chrY 5754313 5754626 -45758958 - BSR/Beta Satellite Satellite -19 360 45 707 233 26 15 chrY 5754640 5755043 -45758541 - BSR/Beta Satellite Satellite -2 407 1 914 295 56 6 chrY 5755105 5755580 -45758004 - BSR/Beta Satellite Satellite 0 498 1 327 326 30 0 chrY 5755614 5755746 -45757838 - BSR/Beta Satellite Satellite -15 137 2 608 281 18 31 chrY 5755832 5756639 -45756945 - BSR/Beta Satellite Satellite 0 796 1 1311 277 14 16 chrY 5756722 5757420 -45756164 - BSR/Beta Satellite Satellite -49 696 1 537 281 24 21 chrY 5757515 5758598 -45754986 - BSR/Beta Satellite Satellite 0 1085 1 572 309 6 6 chrY 5758654 5758964 -45754620 - BSR/Beta Satellite Satellite -44 310 1 1065 298 16 2 chrY 5758987 5759336 -45754248 - BSR/Beta Satellite Satellite -5 353 1 652 236 19 61 chrY 5759363 5759945 -45753639 - BSR/Beta Satellite Satellite 0 557 1 517 297 4 0 chrY 5759958 5760122 -45753462 - BSR/Beta Satellite Satellite -3 164 1 1048 300 6 12 chrY 5760303 5760636 -45752948 - BSR/Beta Satellite Satellite -44 335 5 1093 250 36 32 chrY 5760652 5760960 -45752624 - BSR/Beta Satellite Satellite -13 366 58 469 255 45 34 chrY 5760993 5761364 -45752220 - BSR/Beta Satellite Satellite 0 374 1 1295 270 23 16 chrY 5761392 5761949 -45751635 - BSR/Beta Satellite Satellite -44 560 1 255 304 13 13 chrY 5762077 5762156 -45751428 - BSR/Beta Satellite Satellite -41 111 33 412 274 35 16 chrY 5762328 5762719 -45750865 - BSR/Beta Satellite Satellite -1 398 1 * 533 252 12 16 chrY 5762594 5762779 -45750805 - BSR/Beta Satellite Satellite 0 184 1 1037 259 36 19 chrY 5763080 5763774 -45749810 - BSR/Beta Satellite Satellite 0 705 1 452 288 20 16 chrY 5763819 5764055 -45749529 - BSR/Beta Satellite Satellite -2 236 1 1037 299 20 4 chrY 5764132 5764873 -45748711 - BSR/Beta Satellite Satellite -1 752 1 609 279 14 23 chrY 5764916 5765321 -45748263 - BSR/Beta Satellite Satellite -5 401 1 234 0 0 0 chrY 5765351 5765377 -45748207 + (TTA)n Simple_repeat Simple_repeat 2 27 0 14605 63 7 3 chrY 5765377 5767995 -45745589 - L1PA4 LINE L1 -22 6133 3509 1120 273 52 6 chrY 5769468 5769798 -45743786 - L1MB5 LINE L1 -13 6161 5817 1189 231 151 16 chrY 5769805 5770256 -45743328 - L1MB5 LINE L1 -415 5765 5254 272 312 16 24 chrY 5770282 5770407 -45743177 + L1M3d LINE L1 772 895 -5758 331 346 27 43 chrY 5770536 5770820 -45742764 + L1M3d LINE L1 372 659 -5994 1819 159 10 3 chrY 5770820 5771115 -45742469 - AluSx SINE Alu -15 297 1 331 346 27 43 chrY 5771115 5771159 -45742425 + L1M3d LINE L1 659 1436 -5217 226 305 48 72 chrY 5771189 5771356 -45742228 + L1M3de LINE L1 283 445 -6208 1573 227 39 53 chrY 5771447 5771878 -45741706 + MSTB LTR MaLR 1 425 -1 1570 189 0 23 chrY 5772106 5772407 -45741177 - AluSg SINE Alu -16 294 1 709 354 39 25 chrY 5772497 5772904 -45740680 + L1M3de LINE L1 438 850 -5813 378 61 0 0 chrY 5773884 5773933 -45739651 + (CA)n Simple_repeat Simple_repeat 2 50 0 211 50 75 0 chrY 5773935 5773975 -45739609 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 287 283 11 22 chrY 5773985 5774077 -45739507 - MLT1E LTR MaLR -118 475 385 282 338 115 20 chrY 5774220 5774368 -45739216 + AluSc SINE Alu 135 296 -3 1019 89 17 17 chrY 5774968 5775102 -45738482 + (TTTC)n Simple_repeat Simple_repeat 1 314 0 1019 89 17 17 chrY 5775102 5775282 -45738302 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 284 159 0 0 chrY 5775324 5775368 -45738216 + T-rich Low_complexity Low_complexity 1 44 0 1247 223 45 3 chrY 5775377 5775544 -45738040 - AluSx SINE Alu -9 303 118 375 41 0 0 chrY 5775544 5775593 -45737991 + (TG)n Simple_repeat Simple_repeat 2 50 0 1247 223 45 3 chrY 5775593 5775712 -45737872 - AluSx SINE Alu -194 118 5 1367 232 3 0 chrY 5775756 5776062 -45737522 - AluSx SINE Alu -1 311 5 279 280 64 24 chrY 5776534 5776659 -45736925 - MLT1C LTR MaLR -27 515 386 22 0 0 0 chrY 5777199 5777221 -45736363 + AT_rich Low_complexity Low_complexity 1 22 0 208 259 129 35 chrY 5779359 5779444 -45734140 + MIR3 SINE MIR 87 179 -29 809 78 0 0 chrY 5781845 5781948 -45731636 - L1P3 LINE L1 -622 5532 5430 2160 103 29 7 chrY 5781948 5782256 -45731328 + L1PA6 LINE L1 5837 6153 -1 2000 116 18 7 chrY 5783524 5783808 -45729776 - AluSq SINE Alu -26 287 1 358 111 0 0 chrY 5784595 5784649 -45728935 - AluSc SINE Alu -2 297 244 817 108 57 38 chrY 5784750 5784907 -45728677 + AluJb SINE Alu 32 191 -121 467 75 164 15 chrY 5784908 5784975 -45728609 + AluSg/x SINE Alu 77 153 -159 1971 97 0 30 chrY 5785001 5785268 -45728316 - AluSc SINE Alu -12 297 39 197 245 19 0 chrY 5785485 5785538 -45728046 - L2 LINE L2 -70 3243 3190 2164 114 3 0 chrY 5786647 5786936 -45726648 - AluSx SINE Alu -17 295 6 2203 125 3 0 chrY 5786947 5787250 -45726334 - AluSx SINE Alu -8 304 1 2232 106 3 3 chrY 5787261 5787564 -45726020 - AluSx SINE Alu -7 305 3 653 62 0 0 chrY 5787588 5787668 -45725916 - AluSg/x SINE Alu -12 298 219 344 359 33 22 chrY 5787800 5787984 -45725600 - L2 LINE L2 -2835 479 294 213 178 59 59 chrY 5788191 5788292 -45725292 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 401 174 64 35 chrY 5788301 5788473 -45725111 + (TA)n Simple_repeat Simple_repeat 1 177 0 662 294 34 21 chrY 5788484 5788722 -45724862 - MLT1C LTR MaLR -192 275 35 207 0 0 0 chrY 5788723 5788746 -45724838 + (T)n Simple_repeat Simple_repeat 1 23 0 366 153 38 77 chrY 5789429 5789612 -45723972 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 370 161 77 37 chrY 5789589 5789928 -45723656 + (TA)n Simple_repeat Simple_repeat 1 352 0 366 153 42 76 chrY 5789870 5790462 -45723122 + (CATATA)n Simple_repeat Simple_repeat 1 572 0 * 408 246 59 0 chrY 5790570 5790688 -45722896 - L1MC3 LINE L1 -1571 6214 6090 229 304 76 67 chrY 5842366 5842826 -45670758 + SST1 Satellite centromeric 138 601 -962 302 200 44 0 chrY 5843678 5843768 -45669816 + (TG)n Simple_repeat Simple_repeat 1 94 0 252 0 0 0 chrY 5843901 5843929 -45669655 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 276 30 0 0 chrY 5844003 5844036 -45669548 + (A)n Simple_repeat Simple_repeat 1 33 0 1617 236 17 12 chrY 5844474 5844880 -45668704 + LTR2 LTR ERV1 42 449 0 9232 196 27 18 chrY 5844880 5847160 -45666424 + Harlequin LTR ERV1 1 2384 -5429 * 10916 171 2 22 chrY 5847151 5849031 -45664553 + Harlequin LTR ERV1 2504 4344 -3469 3595 42 2 37 chrY 5849033 5849722 -45663862 - L1P1 LINE L1 -430 5725 5070 3879 49 0 0 chrY 5849722 5850189 -45663395 + L1PA2 LINE L1 5685 6154 -1 16214 229 7 5 chrY 5850194 5853565 -45660019 + Harlequin LTR ERV1 4350 7811 -2 1496 246 57 24 chrY 5853565 5853766 -45659818 + LTR2 LTR ERV1 1 194 -255 351 0 0 0 chrY 5853766 5853805 -45659779 + (TTCTG)n Simple_repeat Simple_repeat 2 40 0 1496 246 57 24 chrY 5853805 5854026 -45659558 + LTR2 LTR ERV1 194 437 -12 417 314 65 57 chrY 5854286 5854745 -45658839 + SST1 Satellite centromeric 132 594 -969 195 69 0 0 chrY 5855689 5855718 -45657866 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 324 67 57 chrY 5856762 5857222 -45656362 + SST1 Satellite centromeric 138 602 -961 183 217 0 0 chrY 5858127 5858187 -45655397 + (TG)n Simple_repeat Simple_repeat 1 60 0 270 106 0 0 chrY 5860632 5860679 -45652905 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 281 39 0 77 chrY 5863033 5863085 -45650499 + (TG)n Simple_repeat Simple_repeat 1 48 0 296 241 12 0 chrY 5864504 5864587 -45648997 + (TG)n Simple_repeat Simple_repeat 1 84 0 24 0 0 0 chrY 5865084 5865108 -45648476 + AT_rich Low_complexity Low_complexity 1 24 0 388 303 72 55 chrY 5865648 5866103 -45647481 + SST1 Satellite centromeric 138 600 -963 600 14 0 0 chrY 5867107 5867176 -45646408 + (TTC)n Simple_repeat Simple_repeat 2 70 0 283 298 71 58 chrY 5868248 5868543 -45645041 + SST1 Satellite centromeric 207 505 -1058 216 0 0 0 chrY 5869673 5869697 -45643887 + (A)n Simple_repeat Simple_repeat 1 24 0 397 297 108 61 chrY 5870503 5870947 -45642637 + SST1 Satellite centromeric 137 601 -962 230 276 0 0 chrY 5871439 5871497 -45642087 + SST1 Satellite centromeric 1163 1220 -343 195 69 0 0 chrY 5871876 5871905 -45641679 + (TG)n Simple_repeat Simple_repeat 1 29 0 264 332 64 62 chrY 5873451 5873824 -45639760 + SST1 Satellite centromeric 1165 1538 -25 180 77 0 0 chrY 5873883 5873909 -45639675 + (TG)n Simple_repeat Simple_repeat 1 26 0 274 320 70 59 chrY 5874907 5875435 -45638149 + SST1 Satellite centromeric 62 595 -968 252 59 0 0 chrY 5876375 5876409 -45637175 + (TG)n Simple_repeat Simple_repeat 1 34 0 372 299 59 67 chrY 5877556 5877944 -45635640 + SST1 Satellite centromeric 227 611 -952 243 240 13 0 chrY 5883082 5883157 -45630427 + (TG)n Simple_repeat Simple_repeat 1 76 0 328 313 76 47 chrY 5884284 5884667 -45628917 + SST1 Satellite centromeric 207 600 -963 336 316 84 71 chrY 5885154 5885546 -45628038 + SST1 Satellite centromeric 1163 1559 -4 212 0 36 0 chrY 5885836 5885864 -45627720 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 234 250 12 12 chrY 5887536 5887620 -45625964 + (TG)n Simple_repeat Simple_repeat 1 84 0 257 339 59 51 chrY 5888762 5889137 -45624447 + SST1 Satellite centromeric 224 601 -962 303 113 0 0 chrY 5890067 5890120 -45623464 + (TG)n Simple_repeat Simple_repeat 2 54 0 295 289 0 0 chrY 5892125 5892201 -45621383 + SST1 Satellite centromeric 1163 1238 -325 249 167 0 0 chrY 5892826 5892880 -45620704 + A-rich Low_complexity Low_complexity 1 54 0 233 321 44 44 chrY 5893874 5894123 -45619461 + SST1 Satellite centromeric 352 600 -963 269 94 0 62 chrY 5895036 5895100 -45618484 + (TG)n Simple_repeat Simple_repeat 1 60 0 236 213 27 0 chrY 5897467 5897542 -45616042 + (TG)n Simple_repeat Simple_repeat 1 77 0 208 279 0 0 chrY 5899927 5899995 -45613589 + (TG)n Simple_repeat Simple_repeat 1 68 0 321 26 0 0 chrY 5900033 5900071 -45613513 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 234 0 0 0 chrY 5902705 5902731 -45610853 + (A)n Simple_repeat Simple_repeat 1 26 0 237 294 32 40 chrY 5903566 5903692 -45609892 + SST1 Satellite centromeric 138 262 -1301 264 130 0 0 chrY 5904957 5905003 -45608581 + (TG)n Simple_repeat Simple_repeat 1 46 0 264 314 72 55 chrY 5905752 5906099 -45607485 + SST1 Satellite centromeric 138 490 -1073 309 278 76 28 chrY 5906365 5906509 -45607075 + SST1 Satellite centromeric 1386 1536 -27 419 35 18 0 chrY 5906558 5906615 -45606969 + (TG)n Simple_repeat Simple_repeat 1 58 0 423 0 0 0 chrY 5906835 5906882 -45606702 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 245 264 47 62 chrY 5907341 5907534 -45606050 + SST1 Satellite centromeric 412 601 -962 240 342 13 0 chrY 5908039 5908118 -45605466 + SST1 Satellite centromeric 1148 1227 -336 198 0 0 0 chrY 5908462 5908484 -45605100 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chrY 5908706 5908730 -45604854 + (A)n Simple_repeat Simple_repeat 1 24 0 264 313 81 63 chrY 5909581 5910038 -45603546 + SST1 Satellite centromeric 138 602 -961 279 295 0 0 chrY 5910529 5910607 -45602977 + SST1 Satellite centromeric 1162 1239 -324 234 178 41 14 chrY 5910906 5910979 -45602605 + (TG)n Simple_repeat Simple_repeat 2 76 0 198 0 0 0 chrY 5911190 5911212 -45602372 + (A)n Simple_repeat Simple_repeat 1 22 0 180 167 0 0 chrY 5911858 5911906 -45601678 + (TG)n Simple_repeat Simple_repeat 1 48 0 241 313 30 30 chrY 5912958 5913089 -45600495 + SST1 Satellite centromeric 132 262 -1301 216 259 12 12 chrY 5914291 5914376 -45599208 + (TG)n Simple_repeat Simple_repeat 2 86 0 561 326 57 42 chrY 5915335 5915900 -45597684 + SST1 Satellite centromeric 29 601 -962 185 153 0 17 chrY 5916799 5916858 -45596726 + (TG)n Simple_repeat Simple_repeat 2 59 0 2346 65 3 0 chrY 5920032 5920339 -45593245 - AluY SINE Alu -3 308 1 21 0 0 0 chrY 5920568 5920589 -45592995 + AT_rich Low_complexity Low_complexity 1 21 0 415 297 62 56 chrY 5920690 5921010 -45592574 + SST1 Satellite centromeric 314 635 -928 724 12 105 0 chrY 5921674 5921836 -45591748 + (TA)n Simple_repeat Simple_repeat 2 180 0 309 247 41 55 chrY 5921847 5921993 -45591591 + L1MCa LINE L1 1948 2091 -4335 * 333 219 65 116 chrY 5921877 5922169 -45591415 - L1MC5 LINE L1 -209 7752 7476 489 319 46 40 chrY 5923484 5923857 -45589727 + SST1 Satellite centromeric 227 601 -962 257 235 24 0 chrY 5927190 5927275 -45586309 + (TG)n Simple_repeat Simple_repeat 2 88 0 195 152 0 0 chrY 5929689 5929735 -45583849 + (TG)n Simple_repeat Simple_repeat 1 46 0 212 241 0 0 chrY 5932042 5932096 -45581488 + (TG)n Simple_repeat Simple_repeat 1 54 0 224 137 20 0 chrY 5933734 5933785 -45579799 + (TG)n Simple_repeat Simple_repeat 1 52 0 234 265 42 54 chrY 5934785 5934951 -45578633 + SST1 Satellite centromeric 111 274 -1289 248 271 21 0 chrY 5936147 5936243 -45577341 + (TG)n Simple_repeat Simple_repeat 1 98 0 451 342 50 25 chrY 5937185 5937744 -45575840 + SST1 Satellite centromeric 29 601 -962 279 130 0 0 chrY 5938639 5938693 -45574891 + (TG)n Simple_repeat Simple_repeat 1 54 0 226 230 0 14 chrY 5939437 5939511 -45574073 + (TG)n Simple_repeat Simple_repeat 1 73 0 189 107 0 0 chrY 5939552 5939580 -45574004 + (T)n Simple_repeat Simple_repeat 1 28 0 476 294 61 56 chrY 5940576 5941038 -45572546 + SST1 Satellite centromeric 138 601 -962 237 238 24 0 chrY 5941950 5942034 -45571550 + (TG)n Simple_repeat Simple_repeat 1 86 0 1148 84 4 14 chrY 5942072 5942361 -45571223 + (TTC)n Simple_repeat Simple_repeat 1 285 0 180 0 0 0 chrY 5942433 5942453 -45571131 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 412 287 65 67 chrY 5943457 5943844 -45569740 + SST1 Satellite centromeric 227 612 -951 354 74 0 0 chrY 5944742 5944796 -45568788 + (TG)n Simple_repeat Simple_repeat 1 54 0 233 303 37 46 chrY 5946787 5946896 -45566688 + SST1 Satellite centromeric 1132 1239 -324 211 265 20 0 chrY 5947091 5947189 -45566395 + (TG)n Simple_repeat Simple_repeat 1 100 0 314 309 65 52 chrY 5948349 5948718 -45564866 + SST1 Satellite centromeric 227 600 -963 201 154 0 0 chrY 5949218 5949257 -45564327 + (TG)n Simple_repeat Simple_repeat 2 40 0 248 309 48 39 chrY 5950553 5950783 -45562801 + SST1 Satellite centromeric 370 601 -962 22 0 0 0 chrY 5951933 5951955 -45561629 + AT_rich Low_complexity Low_complexity 1 22 0 381 315 55 39 chrY 5952802 5953259 -45560325 + SST1 Satellite centromeric 138 601 -962 184 75 25 25 chrY 5954168 5954208 -45559376 + (TG)n Simple_repeat Simple_repeat 1 40 0 1702 244 13 33 chrY 5954817 5955275 -45558309 + LTR2 LTR ERV1 1 449 0 6954 193 47 13 chrY 5955275 5956948 -45556636 + Harlequin LTR ERV1 1 1806 -6007 * 20908 221 6 9 chrY 5956947 5961086 -45552498 + HERVE LTR ERV1 3681 7808 -5 1745 230 36 25 chrY 5961089 5961533 -45552051 + LTR2 LTR ERV1 1 449 0 270 303 68 64 chrY 5962216 5962467 -45551117 + SST1 Satellite centromeric 349 600 -963 240 268 24 0 chrY 5963311 5963393 -45550191 + (TG)n Simple_repeat Simple_repeat 1 84 0 249 108 0 0 chrY 5963589 5963626 -45549958 + (A)n Simple_repeat Simple_repeat 1 37 0 287 24 0 24 chrY 5963651 5963692 -45549892 + (CA)n Simple_repeat Simple_repeat 1 40 0 198 103 0 0 chrY 5964793 5964822 -45548762 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 1679 159 0 17 chrY 5965754 5966117 -45547467 - AluY SINE Alu 0 358 1 238 254 58 72 chrY 5966201 5966339 -45547245 + SST1 Satellite centromeric 131 266 -1297 248 224 0 0 chrY 5967576 5967634 -45545950 + (TG)n Simple_repeat Simple_repeat 1 58 0 280 312 78 73 chrY 5968478 5968875 -45544709 + SST1 Satellite centromeric 1132 1530 -33 390 279 64 54 chrY 5970071 5970462 -45543122 + SST1 Satellite centromeric 207 601 -962 237 98 0 0 chrY 5971360 5971401 -45542183 + (TG)n Simple_repeat Simple_repeat 1 41 0 264 290 77 82 chrY 5972470 5972936 -45540648 + SST1 Satellite centromeric 138 601 -962 226 340 78 7 chrY 5973658 5973799 -45539785 + SST1 Satellite centromeric 1386 1536 -27 303 49 0 0 chrY 5973874 5973915 -45539669 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 57 0 0 chrY 5975672 5975707 -45537877 + (TG)n Simple_repeat Simple_repeat 2 36 0 180 77 0 0 chrY 5975756 5975782 -45537802 + (T)n Simple_repeat Simple_repeat 1 26 0 279 0 0 0 chrY 5975982 5976013 -45537571 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 216 86 0 0 chrY 5978191 5978226 -45535358 + (TG)n Simple_repeat Simple_repeat 2 36 0 250 312 96 25 chrY 5980451 5980608 -45532976 + SST1 Satellite centromeric 1373 1540 -23 273 145 0 0 chrY 5980641 5980703 -45532881 + (TG)n Simple_repeat Simple_repeat 1 62 0 22 0 0 0 chrY 5980756 5980778 -45532806 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chrY 5980902 5980925 -45532659 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 269 337 55 41 chrY 5981732 5982221 -45531363 + SST1 Satellite centromeric 105 600 -963 202 71 24 24 chrY 5983113 5983155 -45530429 + (TG)n Simple_repeat Simple_repeat 1 42 0 231 265 41 68 chrY 5984200 5984347 -45529237 + SST1 Satellite centromeric 132 274 -1289 278 247 21 0 chrY 5985069 5985166 -45528418 + (CA)n Simple_repeat Simple_repeat 2 100 0 252 0 0 0 chrY 5987158 5987186 -45526398 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 284 306 35 40 chrY 5988315 5988488 -45525096 - SST1 Satellite centromeric -962 601 430 207 0 0 0 chrY 5989591 5989614 -45523970 + (T)n Simple_repeat Simple_repeat 1 23 0 220 186 0 0 chrY 5989816 5989859 -45523725 + (CA)n Simple_repeat Simple_repeat 2 44 0 328 323 52 39 chrY 5989928 5990334 -45523250 - SST1 Satellite centromeric -962 601 191 198 0 0 0 chrY 5991215 5991237 -45522347 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 209 196 0 0 chrY 5991462 5991508 -45522076 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 97 0 0 chrY 5993930 5993961 -45519623 + (CA)n Simple_repeat Simple_repeat 2 32 0 307 277 89 75 chrY 5994887 5995179 -45518405 - SST1 Satellite centromeric -1039 524 229 270 0 0 0 chrY 5996104 5996134 -45517450 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 280 253 10 10 chrY 5996330 5996429 -45517155 + (CA)n Simple_repeat Simple_repeat 1 99 0 1700 152 0 3 chrY 5996533 5996865 -45516719 - AluY SINE Alu 0 331 1 1205 7 0 0 chrY 5996872 5997007 -45516577 - AluYa5 SINE Alu -13 298 164 291 242 0 0 chrY 5997223 5997285 -45516299 - SST1 Satellite centromeric -339 1224 1163 225 250 24 0 chrY 5999305 5999389 -45514195 + (CA)n Simple_repeat Simple_repeat 1 86 0 244 276 109 63 chrY 5999948 6000122 -45513462 - SST1 Satellite centromeric -226 1337 1156 241 333 56 52 chrY 6000612 6000864 -45512720 - SST1 Satellite centromeric -962 601 349 203 83 0 83 chrY 6002153 6002201 -45511383 + (CA)n Simple_repeat Simple_repeat 1 44 0 207 152 0 0 chrY 6003497 6003543 -45510041 + (CA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chrY 6004304 6004325 -45509259 + (T)n Simple_repeat Simple_repeat 1 21 0 182 104 0 83 chrY 6004535 6004583 -45509001 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 311 9 9 chrY 6004662 6004768 -45508816 - SST1 Satellite centromeric -71 1492 1387 411 311 52 59 chrY 6005341 6005630 -45507954 - SST1 Satellite centromeric -963 600 314 241 250 26 0 chrY 6006851 6006927 -45506657 + (CA)n Simple_repeat Simple_repeat 2 79 0 300 161 0 0 chrY 6008964 6009045 -45504539 + T-rich Low_complexity Low_complexity 1 81 0 208 279 0 0 chrY 6009239 6009300 -45504284 + (CA)n Simple_repeat Simple_repeat 2 62 0 275 329 77 64 chrY 6009324 6009716 -45503868 - SST1 Satellite centromeric -11 1552 1156 240 328 42 72 chrY 6010204 6010469 -45503115 - SST1 Satellite centromeric -963 600 344 194 0 39 0 chrY 6011527 6011553 -45502031 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 286 321 59 63 chrY 6012687 6012974 -45500610 - SST1 Satellite centromeric -962 601 316 223 48 24 24 chrY 6013987 6014029 -45499555 + (TTG)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chrY 6014285 6014306 -45499278 + (CA)n Simple_repeat Simple_repeat 1 21 0 394 323 51 36 chrY 6015210 6015600 -45497984 - SST1 Satellite centromeric -961 602 207 252 0 0 0 chrY 6016514 6016542 -45497042 + (T)n Simple_repeat Simple_repeat 1 28 0 226 316 0 25 chrY 6017131 6017210 -45496374 - SST1 Satellite centromeric -325 1238 1162 257 0 30 0 chrY 6018660 6018693 -45494891 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 203 47 70 47 chrY 6018986 6019029 -45494555 + T-rich Low_complexity Low_complexity 2 45 0 201 94 0 0 chrY 6019199 6019231 -45494353 + (CA)n Simple_repeat Simple_repeat 1 32 0 229 255 0 0 chrY 6019509 6019556 -45494028 - SST1 Satellite centromeric -354 1209 1163 281 280 92 74 chrY 6020029 6020486 -45493098 - SST1 Satellite centromeric -962 601 137 683 254 12 48 chrY 6020982 6021314 -45492270 + LTR2 LTR ERV1 1 420 -29 231 36 0 0 chrY 6021314 6021342 -45492242 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2003 230 5 0 chrY 6021364 6021746 -45491838 + Harlequin LTR ERV1 1 384 -6512 452 137 8 18 chrY 6021833 6021960 -45491624 + Harlequin LTR ERV1 525 683 -6213 6029 195 40 7 chrY 6022401 6024918 -45488666 + Harlequin LTR ERV1 658 3376 -4437 6710 200 16 6 chrY 6024919 6026499 -45487085 + Harlequin LTR ERV1 4375 6005 -1808 388 350 0 0 chrY 6026501 6026624 -45486960 + Harlequin LTR ERV1 6383 6505 -1308 721 214 0 0 chrY 6026652 6026783 -45486801 + Harlequin LTR ERV1 6765 6895 -1 708 264 3 36 chrY 6026783 6027144 -45486440 + LTR2 LTR ERV1 1 449 0 227 342 0 0 chrY 6028094 6028173 -45485411 - SST1 Satellite centromeric -322 1241 1163 294 308 80 47 chrY 6028710 6028986 -45484598 - SST1 Satellite centromeric -1072 491 207 245 42 0 83 chrY 6030112 6030160 -45483424 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 294 68 20 chrY 6030205 6030351 -45483233 - SST1 Satellite centromeric -25 1538 1386 206 197 45 0 chrY 6032489 6032555 -45481029 + (CA)n Simple_repeat Simple_repeat 1 69 0 227 341 12 12 chrY 6032890 6032975 -45480609 - SST1 Satellite centromeric -344 1219 1135 227 324 77 50 chrY 6033433 6033915 -45479669 - SST1 Satellite centromeric -962 601 107 204 135 0 0 chrY 6034940 6034977 -45478607 + (CA)n Simple_repeat Simple_repeat 2 38 0 286 320 10 10 chrY 6035334 6035431 -45478153 - SST1 Satellite centromeric -335 1228 1132 315 299 23 40 chrY 6036213 6036387 -45477197 - SST1 Satellite centromeric -1289 274 104 216 143 0 0 chrY 6038276 6038318 -45475266 + (CA)n Simple_repeat Simple_repeat 1 42 0 252 246 0 46 chrY 6038695 6038760 -45474824 - SST1 Satellite centromeric -346 1217 1156 280 321 59 56 chrY 6039247 6039534 -45474050 - SST1 Satellite centromeric -962 601 314 249 33 0 0 chrY 6040550 6040580 -45473004 + (T)n Simple_repeat Simple_repeat 1 30 0 287 270 125 40 chrY 6040900 6041052 -45472532 - SST1 Satellite centromeric -25 1538 1374 458 315 61 52 chrY 6041773 6042233 -45471351 - SST1 Satellite centromeric -962 601 138 301 318 66 42 chrY 6043640 6043926 -45469658 - SST1 Satellite centromeric -1081 482 190 328 315 61 51 chrY 6045892 6046283 -45467301 - SST1 Satellite centromeric -962 601 207 195 129 0 0 chrY 6047147 6047178 -45466406 + (T)n Simple_repeat Simple_repeat 1 31 0 264 91 0 0 chrY 6047435 6047479 -45466105 + (CA)n Simple_repeat Simple_repeat 1 44 0 392 323 49 36 chrY 6050988 6051378 -45462206 - SST1 Satellite centromeric -962 601 207 192 111 0 0 chrY 6052506 6052542 -45461042 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 305 62 51 chrY 6054739 6054916 -45458668 - SST1 Satellite centromeric -1165 398 220 192 40 0 0 chrY 6055839 6055864 -45457720 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 216 253 13 0 chrY 6056064 6056139 -45457445 + (CA)n Simple_repeat Simple_repeat 1 76 0 276 247 21 0 chrY 6057096 6057193 -45456391 + (CA)n Simple_repeat Simple_repeat 2 100 0 273 29 0 0 chrY 6059554 6059588 -45453996 + (CA)n Simple_repeat Simple_repeat 1 34 0 228 275 33 33 chrY 6059948 6060039 -45453545 - SST1 Satellite centromeric -325 1238 1148 291 28 0 0 chrY 6061441 6061477 -45452107 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 32 0 0 chrY 6062757 6062788 -45450796 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 268 42 0 chrY 6063897 6063968 -45449616 - SST1 Satellite centromeric -334 1229 1156 207 0 0 0 chrY 6065236 6065259 -45448325 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 237 236 22 11 chrY 6066584 6066673 -45446911 + (CA)n Simple_repeat Simple_repeat 1 90 0 349 287 65 53 chrY 6067536 6067783 -45445801 - SST1 Satellite centromeric -962 601 352 215 24 0 98 chrY 6068981 6069022 -45444562 + (CA)n Simple_repeat Simple_repeat 1 37 0 471 277 80 72 chrY 6069937 6070327 -45443257 - SST1 Satellite centromeric -962 601 209 249 108 0 0 chrY 6071930 6071967 -45441617 + (T)n Simple_repeat Simple_repeat 1 37 0 268 202 24 12 chrY 6072492 6072576 -45441008 + (CA)n Simple_repeat Simple_repeat 2 86 0 242 309 0 0 chrY 6072887 6072955 -45440629 - SST1 Satellite centromeric -334 1229 1162 227 160 40 40 chrY 6073749 6073799 -45439785 - SST1 Satellite centromeric -1285 278 229 420 20 0 0 chrY 6074935 6074984 -45438600 + (CA)n Simple_repeat Simple_repeat 2 50 0 259 280 78 102 chrY 6075087 6075419 -45438165 - SST1 Satellite centromeric -77 1486 1163 258 293 68 78 chrY 6075917 6076316 -45437268 - SST1 Satellite centromeric -962 601 207 227 338 0 0 chrY 6077830 6077898 -45435686 - SST1 Satellite centromeric -334 1229 1162 248 349 39 35 chrY 6078366 6078621 -45434963 - SST1 Satellite centromeric -964 599 344 225 200 17 0 chrY 6079551 6079611 -45433973 + (CA)n Simple_repeat Simple_repeat 2 62 0 271 348 50 35 chrY 6080535 6080998 -45432586 - SST1 Satellite centromeric -962 601 132 211 270 22 0 chrY 6081944 6082033 -45431551 + (CA)n Simple_repeat Simple_repeat 2 92 0 353 322 61 47 chrY 6082988 6083413 -45430171 - SST1 Satellite centromeric -1039 524 94 2543 151 42 150 chrY 6084297 6085059 -45428525 - LTR1 LTR ERV1 -104 681 2 334 172 0 0 chrY 6085068 6085126 -45428458 - L1MC4 LINE L1 -1375 6667 6610 25 31 0 0 chrY 6086274 6086306 -45427278 + AT_rich Low_complexity Low_complexity 1 32 0 377 264 11 0 chrY 6086309 6086396 -45427188 - FRAM SINE Alu -10 156 69 23 0 0 0 chrY 6086429 6086452 -45427132 + AT_rich Low_complexity Low_complexity 1 23 0 319 313 17 9 chrY 6086452 6086567 -45427017 - FLAM_C SINE Alu -7 126 11 261 0 0 0 chrY 6088730 6088759 -45424825 + (TA)n Simple_repeat Simple_repeat 2 30 0 280 274 103 17 chrY 6089593 6089710 -45423874 + MLT1F LTR MaLR 389 515 -27 1124 217 34 24 chrY 6089879 6090174 -45423410 + AluSx SINE Alu 1 298 -4 1264 203 0 48 chrY 6090229 6090524 -45423060 + AluSx SINE Alu 12 292 -20 969 120 11 11 chrY 6090542 6090717 -45422867 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 270 125 0 0 chrY 6090718 6090766 -45422818 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 347 259 14 119 chrY 6091380 6091523 -45422061 - FLAM_C SINE Alu -5 128 1 287 273 11 23 chrY 6091663 6091751 -45421833 + MLT1E LTR MaLR 385 471 -122 197 119 24 0 chrY 6091755 6091797 -45421787 + (TG)n Simple_repeat Simple_repeat 2 44 0 595 369 44 20 chrY 6092763 6093221 -45420363 - L1M3b LINE L1 -5771 510 42 265 281 143 71 chrY 6093250 6093295 -45420289 - L1M3de LINE L1 -5750 903 863 1510 197 0 14 chrY 6093295 6093574 -45420010 + AluSc SINE Alu 14 288 -21 265 281 143 71 chrY 6093574 6093766 -45419818 - L1M3de LINE L1 -5790 863 649 1335 244 35 45 chrY 6093777 6094203 -45419381 - MSTB LTR MaLR -4 422 1 1762 174 13 3 chrY 6094535 6094839 -45418745 + AluSx SINE Alu 1 307 -5 358 344 23 20 chrY 6094879 6095122 -45418462 - L1M3de LINE L1 -5217 1436 604 22 35 0 0 chrY 6095366 6095395 -45418189 + AT_rich Low_complexity Low_complexity 1 29 0 253 220 0 0 chrY 6095395 6095454 -45418130 - L1MA4 LINE L1 -10 6290 6232 488 238 36 42 chrY 6095500 6095633 -45417951 + L1MA4 LINE L1 6039 6172 -128 1089 240 52 14 chrY 6095633 6095921 -45417663 + AluJo SINE Alu 2 300 -2 488 238 36 42 chrY 6095921 6095955 -45417629 + L1MA4 LINE L1 6172 6205 -95 1495 193 3 21 chrY 6095986 6096276 -45417308 - AluSx SINE Alu -25 287 3 1134 211 41 15 chrY 6096474 6096740 -45416844 + AluSg SINE Alu 15 287 -23 1600 189 3 0 chrY 6098280 6098582 -45415002 + L1MB1 LINE L1 5865 6167 -1 23 0 0 0 chrY 6098903 6098926 -45414658 + AT_rich Low_complexity Low_complexity 1 23 0 387 60 0 0 chrY 6098992 6099042 -45414542 + (TAA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chrY 6099178 6099199 -45414385 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrY 6099326 6099348 -45414236 + AT_rich Low_complexity Low_complexity 1 22 0 1612 155 35 21 chrY 6099394 6099701 -45413883 + AluSg SINE Alu 1 310 0 4836 209 31 15 chrY 6100706 6102616 -45410968 + L1PA16 LINE L1 3990 5924 -242 451 263 0 8 chrY 6102616 6102734 -45410850 + L1P LINE L1 4845 4961 -1185 270 207 0 0 chrY 6102731 6102789 -45410795 - L1PA16 LINE L1 -169 5997 5940 * 1018 195 10 5 chrY 6102804 6102999 -45410585 + L1PA16 LINE L1 5935 6130 -36 26 0 0 0 chrY 6103063 6103089 -45410495 + AT_rich Low_complexity Low_complexity 1 26 0 522 341 110 60 chrY 6103680 6103983 -45409601 - L2 LINE L2 -35 3237 2951 1996 134 0 17 chrY 6103983 6104281 -45409303 + AluSc SINE Alu 1 293 -16 522 341 110 60 chrY 6104281 6104670 -45408914 - L2 LINE L2 -321 2951 2517 890 61 0 0 chrY 6105305 6105419 -45408165 + L1PA4 LINE L1 6038 6151 -4 1472 153 42 0 chrY 6106197 6106433 -45407151 - AluSq SINE Alu -27 286 41 2846 264 41 94 chrY 6106631 6107281 -45406303 - L2 LINE L2 -214 3099 2474 866 0 0 0 chrY 6107281 6107377 -45406207 - AluYa5/8 SINE Alu -5 306 211 2846 264 41 94 chrY 6107377 6108061 -45405523 - L2 LINE L2 -839 2474 1755 1003 333 85 43 chrY 6108107 6108848 -45404736 - L2 LINE L2 -2325 989 218 4779 186 25 12 chrY 6108947 6109946 -45403638 - L1PA16 LINE L1 -11 6155 5144 2904 107 23 7 chrY 6109946 6110387 -45403197 + LTR7 LTR ERV1 1 448 -2 4779 186 25 12 chrY 6110387 6110627 -45402957 - L1PA16 LINE L1 -1022 5144 4909 750 265 33 23 chrY 6110722 6110937 -45402647 + MER58A DNA MER1_type 2 218 -6 217 326 11 34 chrY 6111006 6111095 -45402489 - MER5B DNA MER1_type -67 111 25 1973 196 61 25 chrY 6111616 6112059 -45401525 + LTR2B LTR ERV1 32 490 0 39800 216 10 8 chrY 6112059 6119859 -45393725 + HERVE LTR ERV1 1 7812 -1 1762 227 61 20 chrY 6119878 6120319 -45393265 + LTR2B LTR ERV1 32 490 0 202 273 18 0 chrY 6121186 6121241 -45392343 - MIR SINE MIR -66 142 87 545 345 72 5 chrY 6122338 6122547 -45391037 + MIR SINE MIR 36 258 -4 193 318 0 0 chrY 6122637 6122681 -45390903 + L2 LINE L2 3210 3253 -19 502 352 28 28 chrY 6123204 6123491 -45390093 - L3 LINE CR1 -78 1499 1213 1349 240 17 40 chrY 6123682 6124032 -45389552 - MLT1A1 LTR MaLR 0 365 24 2601 222 63 9 chrY 6124753 6125326 -45388258 - MER90 LTR ERV1 -10 604 1 409 280 93 90 chrY 6125352 6125620 -45387964 - L2 LINE L2 -65 3248 2980 247 270 112 66 chrY 6126679 6126831 -45386753 - MIR SINE MIR -56 206 48 287 304 114 43 chrY 6126893 6127077 -45386507 + MIR SINE MIR 66 262 0 313 325 25 8 chrY 6127105 6127225 -45386359 + MIR SINE MIR 124 245 -17 21 57 0 0 chrY 6129100 6129135 -45384449 + AT_rich Low_complexity Low_complexity 1 35 0 273 320 271 36 chrY 6130443 6130746 -45382838 - L2 LINE L2 -2 3311 2938 2749 23 0 0 chrY 6130766 6131076 -45382508 - AluYa5 SINE Alu -1 310 1 394 225 66 60 chrY 6132120 6132271 -45381313 + MIR SINE MIR 101 252 -10 1133 142 0 6 chrY 6132474 6132650 -45380934 - THE1C LTR MaLR -2 373 199 1808 158 59 31 chrY 6132657 6133011 -45380573 - THE1B LTR MaLR 0 364 1 4449 118 3 0 chrY 6133015 6133632 -45379952 - THE1B-int LTR MaLR -4 1576 958 3181 122 2 0 chrY 6133630 6134106 -45379478 - THE1B-int LTR MaLR -1088 492 16 * 1833 178 48 22 chrY 6134122 6134477 -45379107 - THE1B LTR MaLR 0 364 1 1071 192 21 0 chrY 6134478 6134671 -45378913 - THE1C LTR MaLR -178 197 1 953 214 136 16 chrY 6134750 6134993 -45378591 + AluSx SINE Alu 1 272 -40 281 259 35 26 chrY 6135167 6135283 -45378301 - L1MC5 LINE L1 -528 7433 7317 451 215 9 19 chrY 6135326 6135433 -45378151 - LTR16B LTR ERVL 0 464 359 268 366 37 101 chrY 6135609 6135964 -45377620 + L2 LINE L2 2936 3267 -5 345 283 151 19 chrY 6136064 6136223 -45377361 + MIR SINE MIR 12 191 -71 2019 150 0 3 chrY 6136371 6136664 -45376920 + AluSg SINE Alu 1 292 -18 1163 306 63 42 chrY 6136707 6137511 -45376073 - L2 LINE L2 -19 3294 2466 195 42 0 0 chrY 6137515 6137539 -45376045 + (TAA)n Simple_repeat Simple_repeat 3 26 0 487 302 63 40 chrY 6137552 6137774 -45375810 - MIR SINE MIR -23 239 13 236 289 0 0 chrY 6137910 6137962 -45375622 + LTR30 LTR ERV1 1 52 -670 1199 146 54 65 chrY 6137962 6138225 -45375359 + LTR12 LTR ERV1 53 258 -456 320 283 10 0 chrY 6138226 6138325 -45375259 + LTR30 LTR ERV1 525 624 -98 712 173 3 71 chrY 6138325 6138466 -45375118 + LTR12 LTR ERV1 300 483 -231 * 5773 138 1 7 chrY 6138460 6139352 -45374232 + HERV9 LTR ERV1 2086 2972 -5427 1045 155 92 5 chrY 6139351 6139558 -45374026 + HERV9 LTR ERV1 4756 4980 -3419 * 2282 176 90 88 chrY 6139525 6140424 -45373160 + HERV9 LTR ERV1 840 1740 -5156 269 105 0 0 chrY 6140422 6140460 -45373124 + HERV9 LTR ERV1 7626 7663 -736 * 1410 190 4 0 chrY 6140455 6140708 -45372876 + HERV9 LTR ERV1 7796 8049 -350 255 339 52 17 chrY 6141335 6141450 -45372134 + MIR SINE MIR 56 174 -88 407 309 54 36 chrY 6141661 6141820 -45371764 + MIR3 SINE MIR 35 199 -9 716 296 14 9 chrY 6141820 6142043 -45371541 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrY 6143368 6143389 -45370195 + (T)n Simple_repeat Simple_repeat 1 21 0 245 29 29 0 chrY 6143567 6143601 -45369983 + (CA)n Simple_repeat Simple_repeat 2 36 0 721 224 8 100 chrY 6143640 6143881 -45369703 + MER20 DNA MER1_type 1 219 0 1988 129 6 3 chrY 6144572 6144883 -45368701 - AluSp SINE Alu -1 312 1 381 271 84 67 chrY 6145146 6145537 -45368047 - L1MC/D LINE L1 -2048 5760 5363 421 298 88 19 chrY 6145590 6145795 -45367789 - L1MC/D LINE L1 -801 5345 5127 1916 140 39 0 chrY 6146256 6146541 -45367043 - AluSx SINE Alu -14 298 3 279 309 50 69 chrY 6146808 6147187 -45366397 - L1MC/D LINE L1 -2200 3946 3575 279 0 0 0 chrY 6147233 6147264 -45366320 + (GA)n Simple_repeat Simple_repeat 2 32 0 1431 176 44 37 chrY 6147338 6147610 -45365974 + THE1B LTR MaLR 1 274 -90 527 238 7 7 chrY 6147644 6147787 -45365797 + L1MB7 LINE L1 6033 6175 -9 358 336 43 43 chrY 6147834 6148114 -45365470 - L2 LINE L2 -809 2505 2226 300 53 0 0 chrY 6148926 6148964 -45364620 + (TG)n Simple_repeat Simple_repeat 2 39 0 319 320 41 46 chrY 6149776 6149970 -45363614 + MIR SINE MIR 60 252 -10 193 111 0 0 chrY 6150754 6150781 -45362803 - MIR SINE MIR -155 107 81 243 88 0 0 chrY 6150795 6150829 -45362755 + (TG)n Simple_repeat Simple_repeat 1 34 0 5869 118 20 3 chrY 6152425 6153874 -45359710 + L1PA11 LINE L1 4697 6169 -5 225 186 0 23 chrY 6153972 6154015 -45359569 + L2 LINE L2 3268 3309 -4 202 346 48 19 chrY 6154020 6154124 -45359460 - MIR SINE MIR -65 143 37 482 302 48 40 chrY 6154371 6154619 -45358965 - MIR SINE MIR -2 260 11 22 0 0 0 chrY 6155304 6155326 -45358258 + AT_rich Low_complexity Low_complexity 1 22 0 1131 233 77 52 chrY 6155454 6155573 -45358011 - MLT1A2 LTR MaLR 0 374 259 1927 154 0 10 chrY 6155573 6155878 -45357706 + AluSx SINE Alu 1 302 -10 1131 233 77 52 chrY 6155878 6156123 -45357461 - MLT1A2 LTR MaLR -115 259 1 266 303 13 0 chrY 6156538 6156614 -45356970 - MER81 DNA DNA -2 112 36 248 175 0 0 chrY 6158333 6158396 -45355188 + L1MA3 LINE L1 6243 6305 0 183 42 0 0 chrY 6158685 6158709 -45354875 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1482 153 3 93 chrY 6158729 6159030 -45354554 - AluSc SINE Alu -35 274 1 589 159 7 43 chrY 6159456 6159594 -45353990 + L1MA7 LINE L1 6158 6290 -1 756 151 0 0 chrY 6160430 6160600 -45352984 - AluSg/x SINE Alu 0 336 167 1454 156 34 1 chrY 6160601 6160839 -45352745 - LTR12 LTR ERV1 0 2425 478 325 247 31 0 chrY 6160846 6160943 -45352641 - LTR30 LTR ERV1 -99 623 524 1274 134 0 144 chrY 6160943 6161220 -45352364 - LTR12 LTR ERV1 -456 258 22 235 214 89 0 chrY 6161220 6161276 -45352308 - AluSq SINE Alu -109 194 134 644 215 15 0 chrY 6161276 6161406 -45352178 - AluJo/FLAM SINE Alu -169 133 2 909 155 7 7 chrY 6162679 6162859 -45350725 - AluSc SINE Alu 0 310 131 671 172 86 17 chrY 6162948 6163122 -45350462 - MER53 DNA DNA -1 188 3 573 320 34 7 chrY 6163232 6163604 -45349980 - L1ME LINE L1 -595 5571 5194 296 298 67 58 chrY 6163792 6163993 -45349591 - L1ME LINE L1 -3415 2731 2533 1995 125 0 67 chrY 6163993 6164321 -45349263 + AluSx SINE Alu 1 306 -6 296 298 67 58 chrY 6164321 6164615 -45348969 - L1ME LINE L1 -3613 2533 2232 207 139 0 0 chrY 6164679 6164715 -45348869 + (TA)n Simple_repeat Simple_repeat 2 37 0 305 318 23 0 chrY 6164718 6164806 -45348778 - L1MC4 LINE L1 -1340 6702 6613 305 318 23 0 chrY 6164806 6164894 -45348690 - L1MC4 LINE L1 -1340 6702 6613 319 311 0 0 chrY 6164907 6164997 -45348587 - L1MC4 LINE L1 -1339 6703 6614 313 233 0 68 chrY 6164914 6165017 -45348567 + L1MC4 LINE L1 6610 6705 -1337 * 480 245 0 0 chrY 6165017 6165160 -45348424 + (TA)n Simple_repeat Simple_repeat 1 143 0 2691 26 0 10 chrY 6165160 6165473 -45348111 - AluYa5 SINE Alu -1 310 1 468 192 30 1 chrY 6165475 6165590 -45347994 - L1MA6 LINE L1 0 6300 6174 24 67 0 0 chrY 6165751 6165796 -45347788 + AT_rich Low_complexity Low_complexity 1 45 0 41 21 0 0 chrY 6165924 6165972 -45347612 + AT_rich Low_complexity Low_complexity 1 48 0 333 309 21 0 chrY 6166188 6166282 -45347302 - MIR SINE MIR -126 136 41 342 0 0 0 chrY 6166317 6166355 -45347229 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 35 0 0 chrY 6166405 6166434 -45347150 + (CA)n Simple_repeat Simple_repeat 2 30 0 386 308 17 8 chrY 6167160 6167280 -45346304 + L2 LINE L2 3189 3309 -4 181 297 16 31 chrY 6168215 6168279 -45345305 + MIR SINE MIR 83 145 -63 1815 171 0 0 chrY 6168601 6168906 -45344678 + AluSx SINE Alu 1 305 0 534 172 104 8 chrY 6169160 6169294 -45344290 + MER96B DNA MER1_type? 88 234 -183 317 359 70 30 chrY 6169511 6169882 -45343702 - L1M4 LINE L1 -3631 2515 2130 364 257 0 38 chrY 6170054 6170159 -45343425 + L1M4 LINE L1 4915 5015 -1131 567 145 84 0 chrY 6170159 6170290 -45343294 + L1MB7 LINE L1 6043 6184 0 1671 226 56 8 chrY 6171403 6171486 -45342098 + LTR2 LTR ERV1 41 119 -330 321 26 0 0 chrY 6171486 6171524 -45342060 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1671 226 56 8 chrY 6171524 6171830 -45341754 + LTR2 LTR ERV1 119 449 0 16359 99 3 5 chrY 6171830 6174093 -45339491 + HERVE LTR ERV1 1 2259 -5554 3242 89 8 43 chrY 6174091 6174575 -45339009 + HERVE LTR ERV1 3061 3527 -4286 * 2087 192 30 82 chrY 6174575 6175170 -45338414 - LTR6A LTR ERV1 0 564 1 244 111 0 74 chrY 6175177 6175231 -45338353 - LTR6B LTR ERV1 -508 50 1 31935 90 3 8 chrY 6175231 6179540 -45334044 + HERVE LTR ERV1 3524 7812 -1 1693 201 67 15 chrY 6179629 6179712 -45333872 + LTR2 LTR ERV1 41 118 -331 369 0 0 0 chrY 6179712 6179753 -45333831 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1693 201 67 15 chrY 6179753 6180058 -45333526 + LTR2 LTR ERV1 118 449 0 12322 68 2 16 chrY 6180118 6182564 -45331020 - L1PA5 LINE L1 -4 6150 3721 474 65 0 0 chrY 6183296 6183358 -45330226 + (ATG)n Simple_repeat Simple_repeat 2 63 0 326 307 102 0 chrY 6183396 6183523 -45330061 - MIR SINE MIR -42 220 81 201 176 0 0 chrY 6185853 6185887 -45327697 + A-rich Low_complexity Low_complexity 1 34 0 1019 268 69 7 chrY 6186049 6186355 -45327229 - MER58B DNA MER1_type -2 339 15 295 373 71 6 chrY 6186564 6186733 -45326851 + MIR SINE MIR 13 192 -70 2021 130 27 0 chrY 6187276 6187575 -45326009 + AluSx SINE Alu 4 310 -2 21 36 0 0 chrY 6187712 6187740 -45325844 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chrY 6188254 6188290 -45325294 + (GA)n Simple_repeat Simple_repeat 1 36 0 496 206 24 8 chrY 6188657 6188783 -45324801 + L1MA4 LINE L1 5545 5672 -628 1127 226 0 5 chrY 6188783 6189000 -45324584 + AluJb SINE Alu 65 280 -32 3000 168 11 27 chrY 6189003 6189442 -45324142 + L1MA4 LINE L1 5672 6100 -200 1620 199 3 3 chrY 6189442 6189734 -45323850 + AluJb SINE Alu 1 292 -20 3000 168 11 27 chrY 6189734 6189918 -45323666 + L1MA4 LINE L1 6100 6285 -15 825 304 156 2 chrY 6190465 6191047 -45322537 - L1M4 LINE L1 -3037 3109 2438 368 246 59 36 chrY 6191068 6191288 -45322296 - L1M4 LINE L1 -3784 2362 2138 360 191 0 0 chrY 6191417 6191480 -45322104 - Tigger5 DNA MER2_type -3 2320 2258 215 106 30 76 chrY 6191481 6191547 -45322037 + (TA)n Simple_repeat Simple_repeat 2 64 0 301 229 14 0 chrY 6191596 6191666 -45321918 + L1MCa LINE L1 1994 2064 -4362 25 0 0 0 chrY 6191776 6191801 -45321783 + AT_rich Low_complexity Low_complexity 1 25 0 302 143 0 0 chrY 6192335 6192377 -45321207 - LTR33 LTR ERVL -2 519 478 * 781 339 85 6 chrY 6192376 6192718 -45320866 - LTR33 LTR ERVL -152 369 1 373 289 75 54 chrY 6192916 6193196 -45320388 - L1MC5 LINE L1 -37 7924 7639 485 276 40 9 chrY 6193286 6193552 -45320032 - L1MC5 LINE L1 -413 7395 7262 549 289 49 26 chrY 6193610 6193914 -45319670 - L1MC5 LINE L1 -744 7217 6907 327 333 62 23 chrY 6195012 6195141 -45318443 - MIR3 SINE MIR -43 165 32 182 296 19 0 chrY 6195215 6195269 -45318315 - MIR3 SINE MIR -3 205 151 205 340 28 66 chrY 6195311 6195417 -45318167 - MER5B DNA MER1_type -72 106 5 273 86 52 0 chrY 6196363 6196421 -45317163 + GA-rich Low_complexity Low_complexity 2 62 0 301 361 31 47 chrY 6196750 6196941 -45316643 + MIR SINE MIR 19 206 -56 357 299 48 42 chrY 6197506 6197673 -45315911 + L1ME LINE L1 5326 5493 -628 23 0 0 0 chrY 6198147 6198170 -45315414 + AT_rich Low_complexity Low_complexity 1 23 0 256 319 39 69 chrY 6198669 6198873 -45314711 + MIR SINE MIR 20 217 -45 381 403 0 0 chrY 6199273 6199392 -45314192 + L2 LINE L2 3133 3251 -21 32 0 0 0 chrY 6199420 6199452 -45314132 + AT_rich Low_complexity Low_complexity 1 32 0 204 292 0 0 chrY 6199491 6199539 -45314045 + L2 LINE L2 3248 3295 -18 2555 59 0 0 chrY 6201072 6201378 -45312206 - AluY SINE Alu -5 306 1 7176 104 6 20 chrY 6201823 6202895 -45310689 + MER11C LTR ERVK 1 1057 -14 21 36 0 0 chrY 6206140 6206168 -45307416 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 6206470 6206491 -45307093 + AT_rich Low_complexity Low_complexity 1 21 0 1205 229 14 10 chrY 6206510 6206798 -45306786 + AluJo SINE Alu 13 301 -11 1854 172 7 0 chrY 6206798 6207094 -45306490 + AluSx SINE Alu 1 298 -14 1430 172 0 101 chrY 6208858 6209170 -45304414 + AluSx SINE Alu 1 280 -32 315 0 0 0 chrY 6209170 6209205 -45304379 + (CA)n Simple_repeat Simple_repeat 2 36 0 1430 172 0 101 chrY 6209205 6209218 -45304366 + AluSx SINE Alu 280 293 -19 183 305 67 29 chrY 6212712 6212817 -45300767 + L2 LINE L2 390 498 -2816 510 253 0 0 chrY 6213564 6213663 -45299921 + AluJ/FLAM SINE Alu 3 101 -211 343 120 0 0 chrY 6213683 6213733 -45299851 - MER1B DNA MER1_type -13 326 277 351 107 0 107 chrY 6213902 6213977 -45299607 - MER1B DNA MER1_type -62 277 211 327 134 82 104 chrY 6214072 6214169 -45299415 + L1MA7 LINE L1 6132 6227 -64 937 183 183 38 chrY 6214169 6214432 -45299152 + AluJo SINE Alu 2 302 0 327 134 82 104 chrY 6214432 6214468 -45299116 + L1MA7 LINE L1 6227 6262 -29 239 71 24 0 chrY 6214759 6214801 -45298783 + (TTATG)n Simple_repeat Simple_repeat 2 44 0 2121 81 0 7 chrY 6214936 6215243 -45298341 - AluY SINE Alu 0 305 1 333 47 0 0 chrY 6215266 6215309 -45298275 + (TG)n Simple_repeat Simple_repeat 2 44 0 1759 171 3 7 chrY 6217097 6217407 -45296177 - AluSc SINE Alu 0 309 1 1601 182 0 7 chrY 6219394 6219674 -45293910 + AluSg SINE Alu 5 282 -28 1090 261 38 21 chrY 6221100 6221387 -45292197 - AluJo SINE Alu -10 292 1 28 0 0 0 chrY 6221495 6221523 -45292061 + AT_rich Low_complexity Low_complexity 1 28 0 1767 254 170 15 chrY 6222836 6223636 -45289948 - L1MB4 LINE L1 0 6180 5257 1406 201 31 3 chrY 6225556 6225844 -45287740 - AluSg SINE Alu -14 296 1 193 127 0 48 chrY 6226022 6226085 -45287499 + (TTTTTA)n Simple_repeat Simple_repeat 2 61 0 6586 73 17 8 chrY 6226086 6227508 -45286076 - SVA Other Other -875 1384 29 1411 219 3 14 chrY 6227813 6228101 -45285483 + AluSx SINE Alu 3 287 -25 983 249 55 18 chrY 6228167 6228335 -45285249 - AluJo SINE Alu -13 299 116 258 56 0 0 chrY 6228335 6228371 -45285213 + (TG)n Simple_repeat Simple_repeat 1 36 0 983 249 55 18 chrY 6228371 6228475 -45285109 - AluJo SINE Alu -196 116 17 514 250 48 12 chrY 6228483 6228651 -45284933 - L1MA4 LINE L1 -124 6176 6003 335 162 59 0 chrY 6228654 6228722 -45284862 + L1MA4 LINE L1 6218 6289 -11 276 301 30 38 chrY 6228748 6228881 -45284703 + L1M3d LINE L1 764 895 -5758 360 341 31 63 chrY 6228995 6229279 -45284305 + L1M3d LINE L1 371 662 -5991 2086 140 0 7 chrY 6229279 6229586 -45283998 - AluSx SINE Alu -7 305 1 360 341 31 63 chrY 6229586 6229643 -45283941 + L1M3d LINE L1 662 1436 -5217 1669 212 49 49 chrY 6229924 6230353 -45283231 + MSTB1 LTR MaLR 4 432 0 279 294 9 28 chrY 6230360 6230469 -45283115 + L1M3de LINE L1 649 755 -5898 1613 173 0 44 chrY 6230567 6230896 -45282688 - AluSg SINE Alu 0 316 1 744 338 49 36 chrY 6230980 6231430 -45282154 + L1M3b LINE L1 55 510 -5771 232 204 20 0 chrY 6232276 6232325 -45281259 - L1MC/D LINE L1 -1999 5809 5760 587 211 7 112 chrY 6232593 6232745 -45280839 + FLAM_C SINE Alu 2 137 -6 761 160 6 17 chrY 6233372 6233553 -45280031 + CT-rich Low_complexity Low_complexity 2 180 0 1458 228 0 27 chrY 6233589 6233887 -45279697 - AluSx SINE Alu -8 294 5 1345 226 13 0 chrY 6233932 6234238 -45279346 - AluSx SINE Alu -2 310 1 368 280 58 77 chrY 6234710 6235153 -45278431 - MLT1F LTR MaLR -27 515 102 839 99 0 0 chrY 6240122 6240233 -45273351 - L1P3 LINE L1 -614 5540 5430 2358 104 0 0 chrY 6240233 6240549 -45273035 + L1PA6 LINE L1 5837 6154 0 683 143 7 20 chrY 6241843 6241990 -45271594 + GA-rich Low_complexity Low_complexity 3 147 0 22 35 0 0 chrY 6242500 6242529 -45271055 + AT_rich Low_complexity Low_complexity 1 29 0 720 221 89 13 chrY 6244235 6244348 -45269236 + AluJo SINE Alu 11 141 -171 186 43 0 0 chrY 6244348 6244371 -45269213 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 720 221 89 13 chrY 6244371 6244415 -45269169 + AluJo SINE Alu 141 180 -132 240 174 0 22 chrY 6244453 6244499 -45269085 + Alu SINE Alu 86 130 -172 185 178 67 0 chrY 6245022 6245067 -45268517 + L2 LINE L2 3262 3309 -4 228 299 207 18 chrY 6245460 6245624 -45267960 + LTR33A LTR ERVL 131 325 -198 21 0 0 0 chrY 6245664 6245685 -45267899 + AT_rich Low_complexity Low_complexity 1 21 0 560 198 0 24 chrY 6245685 6245811 -45267773 + LTR1 LTR ERV1 1 123 -662 2421 172 36 62 chrY 6245812 6246421 -45267163 + LTR1 LTR ERV1 89 681 -104 6171 160 112 109 chrY 6246763 6248453 -45265131 + pTR5 LTR ERV1 743 2436 -2 655 170 18 0 chrY 6248487 6248599 -45264985 - MER41E LTR ERV1 -393 119 6 3791 179 51 17 chrY 6250707 6251489 -45262095 - L1PA16 LINE L1 -1 6165 5357 26286 82 3 2 chrY 6251645 6257781 -45255803 - L1PA5 LINE L1 -4 6150 12 22 0 0 0 chrY 6260111 6260133 -45253451 + AT_rich Low_complexity Low_complexity 1 22 0 394 316 73 10 chrY 6260263 6260469 -45253115 - L1ME LINE L1 -653 5511 5293 21 0 0 0 chrY 6260556 6260577 -45253007 + AT_rich Low_complexity Low_complexity 1 21 0 206 315 27 27 chrY 6260855 6260928 -45252656 + MER5A DNA MER1_type 43 115 -74 766 133 9 0 chrY 6262329 6262442 -45251142 - AluSc SINE Alu -193 116 3 24 0 0 0 chrY 6262442 6262466 -45251118 + AT_rich Low_complexity Low_complexity 1 24 0 1590 163 29 0 chrY 6262832 6263155 -45250429 + AluSq SINE Alu 1 331 0 26 0 0 0 chrY 6263314 6263340 -45250244 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrY 6263821 6263843 -45249741 + AT_rich Low_complexity Low_complexity 1 22 0 327 214 0 22 chrY 6264003 6264092 -45249492 - L1MA9 LINE L1 -147 6165 6079 17557 46 1 28 chrY 6264629 6266945 -45246639 + L1PA4 LINE L1 3159 5449 -706 2183 97 0 31 chrY 6266945 6267265 -45246319 + AluY SINE Alu 1 310 -1 17557 46 1 28 chrY 6267265 6267951 -45245633 + L1PA4 LINE L1 5449 6152 -3 252 86 0 0 chrY 6268730 6268765 -45244819 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 1992 122 17 7 chrY 6271544 6271917 -45241667 - AluY SINE Alu 0 385 10 1451 202 40 11 chrY 6272557 6272834 -45240750 + AluSx SINE Alu 3 287 -25 23 0 0 0 chrY 6272834 6272857 -45240727 + AT_rich Low_complexity Low_complexity 1 23 0 29 21 0 21 chrY 6273218 6273238 -45240346 + AT_rich Low_complexity Low_complexity 1 20 -26 189 0 0 0 chrY 6273238 6273259 -45240325 + (TTATA)n Simple_repeat Simple_repeat 5 25 0 29 21 0 21 chrY 6273259 6273285 -45240299 + AT_rich Low_complexity Low_complexity 20 46 0 405 218 0 0 chrY 6274762 6274886 -45238698 + GA-rich Low_complexity Low_complexity 1 124 0 610 156 11 22 chrY 6275665 6275915 -45237669 + CT-rich Low_complexity Low_complexity 1 247 0 1320 233 0 29 chrY 6275928 6276237 -45237347 - AluSx SINE Alu -8 304 5 356 0 23 0 chrY 6276283 6276327 -45237257 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 1290 232 11 0 chrY 6276329 6276613 -45236971 - AluSx SINE Alu -25 287 1 234 174 22 0 chrY 6276724 6276770 -45236814 + (CA)n Simple_repeat Simple_repeat 2 48 0 301 254 66 25 chrY 6277092 6277214 -45236370 - MLT1F LTR MaLR -27 515 389 1889 127 55 0 chrY 6280957 6281249 -45232335 - AluY SINE Alu -3 308 1 667 107 0 0 chrY 6282775 6282878 -45230706 - L1P3 LINE L1 -622 5532 5430 2134 115 0 0 chrY 6282878 6283188 -45230396 + L1PA6 LINE L1 5836 6148 -6 216 67 0 0 chrY 6283501 6283531 -45230053 + (A)n Simple_repeat Simple_repeat 1 30 0 1937 131 30 10 chrY 6284094 6284392 -45229192 - AluY SINE Alu -7 304 1 26 30 0 0 chrY 6285029 6285062 -45228522 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chrY 6285312 6285340 -45228244 + AT_rich Low_complexity Low_complexity 1 28 0 223 147 44 0 chrY 6286718 6286786 -45226798 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 447 240 62 10 chrY 6287070 6287183 -45226401 + AluJo SINE Alu 11 117 -195 186 43 0 0 chrY 6287183 6287206 -45226378 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 447 240 62 10 chrY 6287206 6287326 -45226258 + AluJo SINE Alu 117 289 -23 181 182 68 0 chrY 6287865 6287909 -45225675 + L2 LINE L2 3263 3309 -4 23 0 0 0 chrY 6288498 6288521 -45225063 + AT_rich Low_complexity Low_complexity 1 23 0 1677 87 138 255 chrY 6288569 6289201 -45224383 + LTR12 LTR ERV1 1 558 -156 5918 138 21 1 chrY 6289215 6290186 -45223398 + HERV9 LTR ERV1 2 991 -7408 25398 119 5 8 chrY 6290193 6294339 -45219245 + HERV9 LTR ERV1 1164 5418 -2981 17412 102 8 14 chrY 6294314 6297007 -45216577 + HERV9 LTR ERV1 5724 8399 0 * 1301 150 74 28 chrY 6297007 6297380 -45216204 + LTR12 LTR ERV1 1 2028 -410 275 277 11 0 chrY 6297381 6297475 -45216109 + LTR30 LTR ERV1 548 642 -80 1335 138 45 0 chrY 6297477 6297701 -45215883 + LTR12 LTR ERV1 481 714 0 2095 179 52 107 chrY 6297702 6298376 -45215208 + LTR1 LTR ERV1 45 681 -104 227 301 46 57 chrY 6299303 6299585 -45213999 + SST1 Satellite centromeric 132 410 -1153 266 271 0 0 chrY 6300249 6300319 -45213265 + SST1 Satellite centromeric 1148 1217 -346 6182 186 5 6 chrY 6300400 6301562 -45212022 + HERVE LTR ERV1 4376 5536 -2277 255 309 44 40 chrY 6302097 6302346 -45211238 + SST1 Satellite centromeric 352 601 -962 224 328 0 0 chrY 6303641 6303705 -45209879 + GA-rich Low_complexity Low_complexity 6 69 0 8191 134 22 6 chrY 6304661 6306046 -45207538 + HERVK14C LTR ERVK 376 1777 -5640 4457 130 12 5 chrY 6306023 6306693 -45206891 + HERVK14C LTR ERVK 1880 2554 -4863 * 15457 102 5 3 chrY 6306674 6308799 -45204785 + HERVK14C LTR ERVK 5289 7417 0 4230 109 3 0 chrY 6308799 6309384 -45204200 + LTR14C LTR ERVK 1 587 0 337 306 56 59 chrY 6311671 6311995 -45201589 + SST1 Satellite centromeric 207 529 -1034 270 296 92 28 chrY 6312779 6312921 -45200663 + SST1 Satellite centromeric 1386 1536 -27 214 254 28 0 chrY 6312926 6312997 -45200587 + (TG)n Simple_repeat Simple_repeat 2 74 0 254 279 0 0 chrY 6315007 6315068 -45198516 + SST1 Satellite centromeric 1157 1217 -346 189 132 0 0 chrY 6315435 6315473 -45198111 + (TG)n Simple_repeat Simple_repeat 1 38 0 288 336 35 38 chrY 6316707 6316996 -45196588 + SST1 Satellite centromeric 314 601 -962 295 341 68 51 chrY 6317457 6317871 -45195713 + SST1 Satellite centromeric 1132 1552 -11 22 0 0 0 chrY 6318454 6318476 -45195108 + AT_rich Low_complexity Low_complexity 1 22 0 2022 36 4 8 chrY 6319257 6319506 -45194078 + L1PA2 LINE L1 5907 6154 -1 291 293 37 52 chrY 6319545 6319736 -45193848 + SST1 Satellite centromeric 414 601 -962 4365 105 108 2 chrY 6319923 6320563 -45193021 - LTR12 LTR ERV1 -6 708 1 229 225 0 0 chrY 6320893 6320933 -45192651 + SST1 Satellite centromeric 1162 1201 -362 303 71 0 0 chrY 6321424 6321466 -45192118 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 243 125 0 0 chrY 6321689 6321729 -45191855 + (CA)n Simple_repeat Simple_repeat 1 40 0 266 301 98 26 chrY 6321767 6321920 -45191664 - SST1 Satellite centromeric -26 1537 1374 305 291 78 76 chrY 6322624 6323085 -45190499 - SST1 Satellite centromeric -962 601 140 195 114 0 0 chrY 6324160 6324195 -45189389 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 348 0 0 chrY 6324552 6324644 -45188940 - SST1 Satellite centromeric -324 1239 1148 463 330 55 39 chrY 6325124 6325688 -45187896 - SST1 Satellite centromeric -962 601 29 286 85 34 0 chrY 6326413 6326472 -45187112 + T-rich Low_complexity Low_complexity 97 157 0 303 326 59 39 chrY 6327634 6328021 -45185563 - SST1 Satellite centromeric -962 601 207 225 0 0 0 chrY 6328933 6328958 -45184626 + (T)n Simple_repeat Simple_repeat 1 25 0 246 95 0 0 chrY 6329156 6329198 -45184386 + (CA)n Simple_repeat Simple_repeat 1 42 0 225 259 101 58 chrY 6329247 6329386 -45184198 - SST1 Satellite centromeric -33 1530 1386 213 121 0 0 chrY 6331544 6331577 -45182007 + (GAA)n Simple_repeat Simple_repeat 2 34 0 249 250 0 0 chrY 6331615 6331687 -45181897 + (CA)n Simple_repeat Simple_repeat 1 72 0 305 315 68 14 chrY 6331720 6331866 -45181718 - SST1 Satellite centromeric -25 1538 1385 352 296 88 33 chrY 6332606 6332846 -45180738 - SST1 Satellite centromeric -962 601 349 204 143 0 0 chrY 6334112 6334154 -45179430 + (CA)n Simple_repeat Simple_repeat 1 42 0 386 296 92 50 chrY 6335034 6335392 -45178192 - SST1 Satellite centromeric -962 601 229 214 247 14 0 chrY 6336559 6336632 -45176952 + (CA)n Simple_repeat Simple_repeat 1 74 0 258 291 86 91 chrY 6336634 6337019 -45176565 - SST1 Satellite centromeric -25 1538 1156 360 237 36 57 chrY 6337514 6337708 -45175876 - SST1 Satellite centromeric -962 601 412 1613 104 0 0 chrY 6337733 6337954 -45175630 - AluY SINE Alu -90 221 1 929 184 70 0 chrY 6338158 6338386 -45175198 - MER33 DNA MER1_type -54 270 27 232 309 129 17 chrY 6338405 6338583 -45175001 - L1ME4a LINE L1 -40 6081 5884 359 266 94 52 chrY 6338913 6339105 -45174479 - L1MC4 LINE L1 -1 8041 7842 408 79 71 32 chrY 6341460 6341586 -45171998 + (TTATA)n Simple_repeat Simple_repeat 5 135 0 311 238 0 0 chrY 6341601 6341664 -45171920 - L1MC4 LINE L1 -1344 6698 6636 415 100 73 0 chrY 6341728 6341838 -45171746 + (TA)n Simple_repeat Simple_repeat 1 118 0 307 208 14 42 chrY 6341843 6341915 -45171669 + L1MCa LINE L1 1996 2065 -4361 315 213 43 64 chrY 6341934 6342028 -45171556 + L1MC4 LINE L1 6612 6703 -1339 653 224 0 0 chrY 6342307 6342423 -45171161 - FLAM_A SINE Alu -17 116 1 1844 146 3 0 chrY 6342543 6342838 -45170746 - AluSq SINE Alu -5 308 13 275 70 0 23 chrY 6343219 6343262 -45170322 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 184 283 22 22 chrY 6343662 6343708 -45169876 - MIR SINE MIR -159 103 58 208 195 49 0 chrY 6344030 6344071 -45169513 + L2 LINE L2 3227 3269 -3 227 302 194 50 chrY 6346528 6346750 -45166834 + MIR SINE MIR 2 255 -7 1333 187 10 49 chrY 6347053 6347229 -45166355 - AluSx SINE Alu -19 293 133 1377 214 7 0 chrY 6347229 6347528 -45166056 - AluSx SINE Alu -11 301 1 1333 187 10 49 chrY 6347528 6347656 -45165928 - AluSx SINE Alu -179 133 1 23 54 0 0 chrY 6347665 6347702 -45165882 + AT_rich Low_complexity Low_complexity 1 37 0 1521 144 128 4 chrY 6347963 6348220 -45165364 - AluSg SINE Alu -9 291 3 333 0 0 0 chrY 6348222 6348231 -45165353 + (TG)n Simple_repeat Simple_repeat 1 46 0 333 0 0 0 chrY 6348231 6348268 -45165316 + (TG)n Simple_repeat Simple_repeat 2 38 0 1278 156 0 36 chrY 6348601 6348826 -45164758 - AluSx SINE Alu -95 217 1 995 251 67 16 chrY 6349450 6350062 -45163522 - L1MC/D LINE L1 -748 5398 4924 253 287 63 21 chrY 6350118 6350261 -45163323 + TAR1 Satellite telomeric 309 457 -1654 235 338 110 0 chrY 6350338 6350483 -45163101 + TAR1 Satellite telomeric 1765 1925 -186 4511 131 135 0 chrY 6351592 6352320 -45161264 + LTR12 LTR ERV1 1 826 0 15151 145 24 47 chrY 6352344 6354730 -45158854 + HERV9 LTR ERV1 58 2496 -5761 360 0 0 0 chrY 6354730 6354770 -45158814 + (TTA)n Simple_repeat Simple_repeat 1 40 0 474 165 25 0 chrY 6354772 6354851 -45158733 - AluYb8 SINE Alu -26 292 212 15151 145 24 47 chrY 6354851 6355512 -45158072 + HERV9 LTR ERV1 2497 3132 -5125 2178 129 0 0 chrY 6556991 6557285 -44956299 + AluSg SINE Alu 1 294 -16 315 233 105 0 chrY 6557903 6557989 -44955595 - MER5B DNA MER1_type -1 177 83 216 0 0 0 chrY 6558320 6558344 -44955240 + (A)n Simple_repeat Simple_repeat 1 24 0 356 238 67 0 chrY 6558710 6558815 -44954769 + MIR SINE MIR 125 236 -26 2347 105 0 0 chrY 6558861 6559156 -44954428 - AluSx SINE Alu -17 295 1 361 209 107 45 chrY 6561227 6561404 -44952180 - L1 LINE L1 -1400 4746 4559 27 73 0 0 chrY 6563349 6563404 -44950180 + AT_rich Low_complexity Low_complexity 1 55 0 21 71 0 0 chrY 6563753 6563795 -44949789 + AT_rich Low_complexity Low_complexity 1 42 0 202 224 40 132 chrY 6564877 6564980 -44948604 + L2 LINE L2 2321 2407 -907 1466 223 7 7 chrY 6564980 6565276 -44948308 + AluSx SINE Alu 3 298 -4 202 224 40 132 chrY 6565276 6565324 -44948260 + L2 LINE L2 2407 2458 -856 1385 148 68 30 chrY 6565325 6565588 -44947996 + AluSx SINE Alu 1 273 -39 2307 136 6 0 chrY 6565736 6566089 -44947495 - THE1A LTR MaLR 0 355 1 348 191 16 40 chrY 6566855 6566981 -44946603 + (TA)n Simple_repeat Simple_repeat 1 123 0 245 251 61 75 chrY 6566984 6567279 -44946305 - L1 LINE L1 -2739 3407 3117 408 153 56 0 chrY 6567533 6567605 -44945979 + AluSc SINE Alu 192 267 -32 234 0 0 0 chrY 6567617 6567643 -44945941 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1353 189 27 34 chrY 6568918 6569188 -44944396 + AluSg SINE Alu 6 275 -35 192 77 0 0 chrY 6569188 6569214 -44944370 + (CA)n Simple_repeat Simple_repeat 2 27 0 1353 189 27 34 chrY 6569214 6569240 -44944344 + AluSg SINE Alu 275 300 -10 419 212 8 61 chrY 6571032 6571136 -44942448 + AluSg/x SINE Alu 183 280 -30 291 28 0 0 chrY 6571136 6571172 -44942412 + (CA)n Simple_repeat Simple_repeat 2 37 0 419 212 8 61 chrY 6571172 6571199 -44942385 + AluSg/x SINE Alu 280 307 -3 369 0 0 0 chrY 6571241 6571282 -44942302 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 156 0 0 chrY 6578380 6578425 -44935159 + (TG)n Simple_repeat Simple_repeat 2 46 0 873 268 52 7 chrY 6581724 6581893 -44931691 - AluJb SINE Alu -2 300 111 252 0 0 0 chrY 6581893 6581921 -44931663 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 873 268 52 7 chrY 6581921 6582038 -44931546 - AluJb SINE Alu -191 111 1 2612 254 66 39 chrY 6582345 6583179 -44930405 - L1MA8 LINE L1 0 6291 5481 207 0 0 0 chrY 6583179 6583202 -44930382 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2612 254 66 39 chrY 6583202 6584060 -44929524 - L1MA8 LINE L1 -810 5481 4559 1958 171 0 0 chrY 6587640 6587944 -44925640 + AluSx SINE Alu 1 304 -8 1554 149 58 45 chrY 6587989 6588297 -44925287 + AluSx SINE Alu 1 312 0 2404 128 8 0 chrY 6588403 6588755 -44924829 - THE1A LTR MaLR 0 355 1 384 284 129 46 chrY 6589240 6589758 -44923826 - L1M4 LINE L1 -2410 3736 3176 1553 298 39 35 chrY 6589995 6590531 -44923053 - HAL1 LINE L1 -462 2045 1503 2031 116 3 63 chrY 6590531 6590850 -44922734 - AluSp SINE Alu -13 300 1 1553 298 39 35 chrY 6590850 6591139 -44922445 - HAL1 LINE L1 -1004 1503 1217 1788 150 0 4 chrY 6591531 6591835 -44921749 + AluSc SINE Alu 7 309 0 430 324 6 39 chrY 6592102 6592284 -44921300 + MER5B DNA MER1_type 2 177 -1 1868 149 4 0 chrY 6592379 6592696 -44920888 - AluSg SINE Alu 0 318 1 23 33 0 0 chrY 6592699 6592729 -44920855 + AT_rich Low_complexity Low_complexity 1 30 0 1474 170 3 63 chrY 6592732 6593032 -44920552 + AluJb SINE Alu 2 283 -29 261 0 0 0 chrY 6593040 6593069 -44920515 + (TG)n Simple_repeat Simple_repeat 2 30 0 399 127 0 0 chrY 6593069 6593132 -44920452 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 321 26 0 0 chrY 6593155 6593193 -44920391 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chrY 6593409 6593430 -44920154 + (T)n Simple_repeat Simple_repeat 1 21 0 1359 165 4 17 chrY 6593697 6593933 -44919651 + AluSg SINE Alu 59 291 -19 4493 309 39 17 chrY 6593933 6596000 -44917584 - MER52-int LTR ERV1 -44 8875 6725 7979 282 31 16 chrY 6596006 6598305 -44915279 - MER52-int LTR ERV1 -668 6423 4122 1595 283 29 11 chrY 6598312 6598761 -44914823 - MER52-int LTR ERV1 -3419 3672 3216 * 1910 287 36 33 chrY 6598759 6599960 -44913624 + LTR25-int LTR ERV1 1650 2791 -4270 4815 34 0 0 chrY 6599960 6600528 -44913056 - L1P LINE L1 -1733 4413 3846 7961 18 1 0 chrY 6600528 6601689 -44911895 + L1PA2 LINE L1 4994 6155 0 1152 331 24 27 chrY 6601691 6602105 -44911479 + LTR25-int LTR ERV1 2778 3190 -5729 1522 265 32 24 chrY 6602105 6602474 -44911110 + LTR25 LTR ERV1 1 376 -418 234 0 0 0 chrY 6602474 6602500 -44911084 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1522 265 32 24 chrY 6602500 6602594 -44910990 + LTR25 LTR ERV1 376 468 -326 742 199 175 0 chrY 6602634 6602805 -44910779 + LTR25 LTR ERV1 408 608 -186 3775 213 34 29 chrY 6602805 6602913 -44910671 + LTR25-int LTR ERV1 1249 1355 -5850 1466 177 32 0 chrY 6602913 6603161 -44910423 + AluSx SINE Alu 30 285 -27 255 31 0 0 chrY 6603161 6603193 -44910391 + (CA)n Simple_repeat Simple_repeat 2 33 0 3775 213 34 29 chrY 6603193 6603426 -44910158 + LTR25-int LTR ERV1 1355 1585 -5620 1527 158 115 0 chrY 6603426 6603686 -44909898 + AluSg1 SINE Alu 2 291 -18 3775 213 34 29 chrY 6603686 6604398 -44909186 + LTR25-int LTR ERV1 1585 4645 -2560 565 121 0 0 chrY 6604411 6604494 -44909090 + AluSc SINE Alu 1 83 -226 * 713 160 40 0 chrY 6604488 6604613 -44908971 + Alu SINE Alu 176 305 -6 3553 220 53 49 chrY 6604624 6605641 -44907943 + LTR25-int LTR ERV1 2212 3223 -3773 2050 133 0 41 chrY 6605641 6605958 -44907626 + AluSq SINE Alu 1 304 -9 3553 220 53 49 chrY 6605958 6606995 -44906589 + LTR25-int LTR ERV1 3223 6996 0 2122 254 5 93 chrY 6606995 6607794 -44905790 + LTR25 LTR ERV1 1 729 -65 192 97 0 0 chrY 6607798 6607829 -44905755 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 232 0 14 chrY 6607833 6607902 -44905682 - L1MC4 LINE L1 -1339 6703 6636 780 249 27 22 chrY 6608031 6608256 -44905328 - LTR25-int LTR ERV1 -6228 2691 2466 1454 289 49 56 chrY 6608362 6609039 -44904545 - LTR25-int LTR ERV1 -6489 2430 1759 2534 228 17 47 chrY 6609119 6609764 -44903820 - LTR25-int LTR ERV1 0 6996 6333 1404 167 130 4 chrY 6609764 6610033 -44903551 + AluSp SINE Alu 1 303 0 2534 228 17 47 chrY 6610033 6610382 -44903202 - LTR25-int LTR ERV1 -663 6333 3314 2239 265 88 51 chrY 6610401 6610529 -44903055 - LTR25-int LTR ERV1 -1355 5736 5614 1859 146 0 34 chrY 6610529 6610823 -44902761 - AluSc SINE Alu -25 284 1 2239 265 88 51 chrY 6610823 6611614 -44901970 - LTR25-int LTR ERV1 -1477 5614 4783 3303 126 10 6 chrY 6611614 6612123 -44901461 - MER9 LTR ERVK 0 511 1 14832 94 7 29 chrY 6612125 6614378 -44899206 - HERVK9 LTR ERVK -3 5913 3711 16550 107 15 15 chrY 6614378 6616665 -44896919 - HERVK9 LTR ERVK -3130 2786 395 183 321 75 19 chrY 6616665 6616771 -44896813 - L3 LINE CR1 -28 1549 1438 16550 107 15 15 chrY 6616771 6617166 -44896418 - HERVK9 LTR ERVK -5521 395 1 3218 152 0 2 chrY 6617166 6617678 -44895906 - MER9 LTR ERVK 0 511 1 6102 287 21 50 chrY 6617678 6619849 -44893735 - LTR25-int LTR ERV1 -2303 4788 2682 2607 219 28 96 chrY 6619854 6620706 -44892878 + LTR25 LTR ERV1 1 794 0 2793 262 46 41 chrY 6620807 6621450 -44892134 + HUERS-P3 LTR ERV1 252 905 -6091 1785 173 6 13 chrY 6621450 6621763 -44891821 - AluSq SINE Alu -2 311 1 2793 262 46 41 chrY 6621763 6622227 -44891357 + HUERS-P3 LTR ERV1 905 1365 -5631 3153 271 73 47 chrY 6622284 6622564 -44891020 + HUERS-P3 LTR ERV1 1480 1751 -5496 1283 208 93 11 chrY 6622564 6622824 -44890760 + AluSx SINE Alu 1 285 -27 204 111 0 0 chrY 6622824 6622860 -44890724 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 3153 271 73 47 chrY 6622868 6623405 -44890179 + HUERS-P3 LTR ERV1 1751 2273 -4974 189 0 0 0 chrY 6623405 6623426 -44890158 + (CTG)n Simple_repeat Simple_repeat 1 21 0 3153 271 73 47 chrY 6623426 6624221 -44889363 + HUERS-P3 LTR ERV1 2273 3030 -4217 7011 268 37 39 chrY 6624269 6625825 -44887759 - LTR25-int LTR ERV1 -4336 2660 1112 1867 183 3 0 chrY 6625825 6626125 -44887459 + AluSg SINE Alu 1 301 -9 7011 268 37 39 chrY 6626125 6627233 -44886351 - LTR25-int LTR ERV1 -5884 1112 3 722 282 106 12 chrY 6627255 6627595 -44885989 - LTR25 LTR ERV1 -2 792 421 1495 309 22 2 chrY 6627714 6628260 -44885324 + HUERS-P3 LTR ERV1 2512 3045 -4300 1295 244 48 0 chrY 6628287 6628643 -44884941 - LTR25 LTR ERV1 0 794 422 270 185 0 0 chrY 6628644 6628698 -44884886 - LTR25 LTR ERV1 -260 534 481 * 1306 257 68 55 chrY 6628690 6629365 -44884219 - LTR25 LTR ERV1 -51 743 32 227 241 149 0 chrY 6629440 6629527 -44884057 - Tigger4(Zombi) DNA MER2_type -2631 100 1 535 280 147 0 chrY 6629655 6629866 -44883718 + MER21B LTR ERV1 1 242 -621 3012 279 128 85 chrY 6629868 6631367 -44882217 + MER52A LTR ERV1 4 1567 -188 565 225 8 0 chrY 6631384 6631504 -44882080 + MER21B LTR ERV1 236 356 -507 3736 264 107 25 chrY 6634379 6636394 -44877190 - L1M4c LINE L1 -4179 2205 25 22 0 0 0 chrY 6636550 6636572 -44877012 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chrY 6636602 6636641 -44876943 + AT_rich Low_complexity Low_complexity 1 39 0 711 301 138 12 chrY 6636862 6637747 -44875837 - L1M4c LINE L1 -4662 1984 989 268 333 39 26 chrY 6637851 6638004 -44875580 - L1M4c LINE L1 -5773 769 615 398 339 60 39 chrY 6638806 6639061 -44874523 - L2 LINE L2 -280 3033 2763 253 245 0 0 chrY 6639095 6639148 -44874436 + MER20 DNA MER1_type 93 145 -74 180 77 0 0 chrY 6640427 6640453 -44873131 + (TTA)n Simple_repeat Simple_repeat 2 27 0 180 179 0 0 chrY 6640939 6640978 -44872606 + (TA)n Simple_repeat Simple_repeat 1 39 0 1720 164 59 16 chrY 6641006 6641379 -44872205 - MLT2A1 LTR ERVL -44 400 12 21831 140 9 17 chrY 6641386 6641716 -44871868 - HERVL-A1-A1 LTR ERVL -1 5653 5322 2678 16 0 7 chrY 6641716 6642020 -44871564 + AluY SINE Alu 1 302 -9 21831 140 9 17 chrY 6642020 6645373 -44868211 - HERVL-A1-A1 LTR ERVL -332 5322 1998 10812 147 11 9 chrY 6645378 6647214 -44866370 - HERVL-A1-A1 LTR ERVL -3814 1840 1 2190 147 62 14 chrY 6647216 6647638 -44865946 - MLT2A1 LTR ERVL -2 442 1 296 259 12 0 chrY 6647638 6647719 -44865865 + MER52A LTR ERV1 680 761 -994 51 65 0 0 chrY 6647764 6647857 -44865727 + AT_rich Low_complexity Low_complexity 1 93 0 484 258 61 42 chrY 6647860 6648073 -44865511 + MER52A LTR ERV1 825 1041 -714 * 3222 270 36 12 chrY 6648051 6649045 -44864539 + MER52A LTR ERV1 880 1755 0 213 132 0 0 chrY 6649130 6649168 -44864416 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 261 57 0 0 chrY 6649168 6649203 -44864381 + (TG)n Simple_repeat Simple_repeat 2 36 0 1647 203 0 0 chrY 6649203 6649479 -44864105 - AluSg SINE Alu -34 276 1 3415 199 23 23 chrY 6650142 6650920 -44862664 + L1PA10 LINE L1 5388 6165 -3 866 205 0 0 chrY 6650987 6651143 -44862441 - AluSc SINE Alu -15 294 139 21 0 0 0 chrY 6651153 6651174 -44862410 + AT_rich Low_complexity Low_complexity 1 21 0 871 280 94 4 chrY 6651239 6651514 -44862070 - AluSx SINE Alu -1 301 2 22 35 0 0 chrY 6651554 6651583 -44862001 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 6652807 6652828 -44860756 + AT_rich Low_complexity Low_complexity 1 21 0 377 303 156 19 chrY 6653172 6653383 -44860201 - L1MC4a LINE L1 -1849 5959 5720 887 119 179 12 chrY 6653664 6653832 -44859752 + pTR5 LTR ERV1 1830 2025 -413 364 194 41 31 chrY 6653832 6653930 -44859654 + LTR30 LTR ERV1 544 642 -80 1517 108 0 5 chrY 6653933 6654155 -44859429 + pTR5 LTR ERV1 172 392 -2046 2874 169 78 0 chrY 6654156 6654658 -44858926 + THE1B-int LTR MaLR 1040 1580 0 1524 170 94 26 chrY 6654658 6654999 -44858585 + THE1B LTR MaLR 1 364 0 554 258 26 26 chrY 6655243 6655394 -44858190 - AluJo SINE Alu -30 282 132 443 294 8 8 chrY 6655418 6655544 -44858040 - AluJo SINE Alu -175 127 2 336 358 8 0 chrY 6655558 6655681 -44857903 - AluJ SINE Alu -178 124 1 21 36 0 0 chrY 6655885 6655913 -44857671 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 6656264 6656287 -44857297 + AT_rich Low_complexity Low_complexity 1 23 0 2070 128 3 3 chrY 6656938 6657236 -44856348 + AluY SINE Alu 1 298 -13 1646 156 14 21 chrY 6657518 6657807 -44855777 + AluSc SINE Alu 1 287 -22 717 265 29 5 chrY 6657927 6658131 -44855453 + MER2 DNA MER2_type 2 210 -135 255 259 62 0 chrY 6658394 6658475 -44855109 - MIR SINE MIR 0 262 177 1452 146 0 0 chrY 6658479 6658698 -44854886 - AluSq SINE Alu -14 299 81 1811 122 3 53 chrY 6658765 6659068 -44854516 + AluY SINE Alu 1 288 -23 1184 101 0 6 chrY 6659072 6659251 -44854333 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 414 232 0 0 chrY 6660167 6660236 -44853348 - FRAM SINE Alu -35 131 63 2386 216 11 2 chrY 6660240 6660708 -44852876 + MER1A DNA MER1_type 19 490 -39 8886 34 1 0 chrY 6660708 6661783 -44851801 - L1PA2 LINE L1 -1333 4813 3738 7686 24 0 0 chrY 6661783 6663126 -44850458 + L1PA2 LINE L1 4810 6153 -2 1867 134 69 0 chrY 6663134 6663410 -44850174 + AluSq SINE Alu 1 295 -18 237 158 0 0 chrY 6663585 6663623 -44849961 + MER1A DNA MER1_type 479 516 -17 814 278 102 4 chrY 6664302 6664547 -44849037 - AluSq SINE Alu -44 269 1 24 85 0 0 chrY 6664640 6664699 -44848885 + AT_rich Low_complexity Low_complexity 1 59 0 461 253 0 0 chrY 6664943 6665038 -44848546 - AluJb SINE Alu -131 181 87 249 239 92 18 chrY 6665047 6665156 -44848428 + L1MC5 LINE L1 7656 7772 -189 22 35 0 0 chrY 6665203 6665232 -44848352 + AT_rich Low_complexity Low_complexity 1 29 0 1930 134 0 36 chrY 6666883 6667189 -44846395 - AluY SINE Alu -15 296 2 22 0 0 0 chrY 6667717 6667739 -44845845 + AT_rich Low_complexity Low_complexity 1 22 0 227 170 0 0 chrY 6668800 6668847 -44844737 + LTR66 LTR ERVL 393 439 -171 262 261 0 22 chrY 6668857 6668949 -44844635 + L1MC4 LINE L1 6614 6703 -1339 1926 108 35 3 chrY 6668950 6669238 -44844346 - AluY SINE Alu -14 297 1 2609 61 0 0 chrY 6669349 6669660 -44843924 + AluY SINE Alu 1 311 0 435 151 8 17 chrY 6669668 6669787 -44843797 + (TA)n Simple_repeat Simple_repeat 2 119 0 285 223 43 11 chrY 6669813 6669907 -44843677 + L1MC4 LINE L1 6608 6704 -1338 23 0 0 0 chrY 6670563 6670586 -44842998 + AT_rich Low_complexity Low_complexity 1 23 0 30 77 0 0 chrY 6671244 6671309 -44842275 + AT_rich Low_complexity Low_complexity 1 65 0 860 249 144 4 chrY 6671414 6671671 -44841913 + AluSg SINE Alu 7 299 -11 23 33 0 0 chrY 6671782 6671812 -44841772 + AT_rich Low_complexity Low_complexity 1 30 0 3467 211 24 14 chrY 6671814 6672574 -44841010 - L1PA10 LINE L1 -1 6167 5401 1602 177 3 31 chrY 6672623 6672911 -44840673 - AluSq SINE Alu -23 290 11 286 130 87 76 chrY 6673102 6673194 -44840390 + MER20 DNA MER1_type 127 219 0 2375 288 45 0 chrY 6673464 6674038 -44839546 - MER52A LTR ERV1 0 1755 1156 1094 132 6 0 chrY 6674038 6674205 -44839379 + ERVL-A1 LTR ERVL 714 881 -4773 2228 160 46 64 chrY 6674205 6674705 -44838879 - LTR22B LTR ERVK 0 492 2 5065 151 14 20 chrY 6674706 6675514 -44838070 - HERVK22 LTR ERVK 0 6837 6033 7932 87 3 8 chrY 6675514 6676591 -44836993 - MER11C LTR ERVK 0 1071 1 5065 151 14 20 chrY 6676591 6676632 -44836952 - HERVK22 LTR ERVK -804 6033 5993 30494 139 25 18 chrY 6676660 6676735 -44836849 - HERVK22 LTR ERVK -951 5886 5813 2021 128 0 4 chrY 6676735 6677016 -44836568 - AluY SINE Alu -29 282 3 30494 139 25 18 chrY 6677016 6681879 -44831705 - HERVK22 LTR ERVK -1024 5813 911 2709 195 2 6 chrY 6681886 6682373 -44831211 - HERVK22 LTR ERVK -6345 492 8 2414 164 41 31 chrY 6682381 6682868 -44830716 - LTR22B LTR ERVK 0 492 1 14023 195 26 7 chrY 6682868 6686069 -44827515 + ERVL-A1 LTR ERVL 876 4613 -1151 4596 135 19 26 chrY 6686081 6686839 -44826745 + ERVL-A1 LTR ERVL 4901 5652 -2 1858 168 63 16 chrY 6686841 6687223 -44826361 + MLT2A1 LTR ERVL 1 400 -44 23 68 0 0 chrY 6687417 6687461 -44826123 + AT_rich Low_complexity Low_complexity 1 44 0 297 228 0 0 chrY 6688202 6688259 -44825325 - MER20 DNA MER1_type -73 146 90 236 357 21 36 chrY 6688316 6688456 -44825128 + L2 LINE L2 2791 2928 -386 24 32 0 0 chrY 6688955 6688986 -44824598 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 6689634 6689658 -44823926 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrY 6689726 6689754 -44823830 + AT_rich Low_complexity Low_complexity 1 28 0 286 279 61 35 chrY 6689804 6690001 -44823583 + L1M4c LINE L1 2295 2496 -3888 3454 260 99 40 chrY 6690028 6691736 -44821848 + L1M4c LINE L1 25 1834 -4550 3934 55 2 0 chrY 6691823 6692318 -44821266 - L1PA3 LINE L1 -3 6152 5657 1823 144 0 7 chrY 6692319 6692597 -44820987 - AluY SINE Alu -35 276 1 463 65 0 0 chrY 6692599 6692661 -44820923 - Alu SINE Alu -11 299 238 463 200 11 0 chrY 6692661 6692751 -44820833 - MER21B LTR ERV1 -522 341 251 2878 305 12 20 chrY 6692764 6693604 -44819980 - MER52A LTR ERV1 0 1755 923 630 321 98 4 chrY 6693572 6693837 -44819747 - MER52A LTR ERV1 -659 1096 807 * 332 236 23 23 chrY 6693893 6694207 -44819377 + (CCCTAA)n Simple_repeat Simple_repeat 1 314 0 222 128 0 0 chrY 6694226 6694265 -44819319 + (CCCCAA)n Simple_repeat Simple_repeat 4 42 0 207 182 0 45 chrY 6694403 6694513 -44819071 + (CCCTAA)n Simple_repeat Simple_repeat 5 109 0 336 275 22 34 chrY 6694536 6694714 -44818870 + (CCCTAA)n Simple_repeat Simple_repeat 5 180 0 181 200 16 24 chrY 6694736 6694861 -44818723 + (CCCTAA)n Simple_repeat Simple_repeat 3 126 0 297 182 6 38 chrY 6695053 6695212 -44818372 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 294 149 0 64 chrY 6695534 6695675 -44817909 + (CCCTAA)n Simple_repeat Simple_repeat 1 132 0 245 195 17 17 chrY 6695690 6695808 -44817776 + (CCCTAA)n Simple_repeat Simple_repeat 3 120 0 371 183 0 39 chrY 6695819 6696085 -44817499 + (CCCTAA)n Simple_repeat Simple_repeat 1 255 0 485 172 24 18 chrY 6696149 6696318 -44817266 + (CCCTAA)n Simple_repeat Simple_repeat 6 175 0 631 327 57 17 chrY 6696506 6697106 -44816478 + L1M4 LINE L1 3676 4299 -1847 30 45 0 0 chrY 6697617 6697661 -44815923 + AT_rich Low_complexity Low_complexity 1 44 0 1915 142 10 0 chrY 6697673 6697962 -44815622 - AluY SINE Alu -19 292 1 21 0 0 0 chrY 6698048 6698069 -44815515 + AT_rich Low_complexity Low_complexity 1 21 0 683 168 147 19 chrY 6698331 6698522 -44815062 + AluJb SINE Alu 19 289 -23 1867 160 0 7 chrY 6698584 6698908 -44814676 + AluSx SINE Alu 1 312 0 472 268 33 13 chrY 6699155 6699308 -44814276 + FRAM SINE Alu 5 160 -16 2107 229 92 46 chrY 6699332 6700259 -44813325 + L1M4 LINE L1 4421 5389 -757 233 340 90 33 chrY 6701523 6701735 -44811849 - TAR1 Satellite telomeric -123 1988 1765 654 245 86 27 chrY 6702113 6702494 -44811090 + L1MC/D LINE L1 5155 5556 -743 985 186 0 11 chrY 6702494 6702677 -44810907 + MER34C LTR ERV1 38 218 -367 518 214 7 0 chrY 6702683 6702828 -44810756 + CT-rich Low_complexity Low_complexity 2 147 0 1421 198 4 8 chrY 6702846 6703109 -44810475 - AluSg SINE Alu -33 277 16 241 217 67 0 chrY 6703127 6703187 -44810397 + MER34C LTR ERV1 211 274 -311 552 216 0 0 chrY 6703187 6703289 -44810295 - MLT2B3 LTR ERVL -452 102 1 1113 247 25 25 chrY 6703289 6703722 -44809862 + MER31-int LTR ERV1 1062 1494 -3442 299 195 121 116 chrY 6703880 6703920 -44809664 + MER31-int LTR ERV1 1808 1846 -3090 1900 143 40 7 chrY 6703920 6704221 -44809363 - AluSq SINE Alu 0 313 3 299 195 121 116 chrY 6704221 6704395 -44809189 + MER31-int LTR ERV1 1846 2023 -2913 3319 142 0 21 chrY 6704398 6704918 -44808666 + MER9 LTR ERVK 3 511 0 12202 93 40 2 chrY 6704918 6706578 -44807006 + HERVK9 LTR ERVK 1 1723 -4193 6658 132 10 25 chrY 6706580 6707651 -44805933 + MER11C LTR ERVK 3 1057 -14 4220 83 2 0 chrY 6707690 6708234 -44805350 + HERVK9 LTR ERVK 1718 2262 -3654 2861 59 6 0 chrY 6708234 6708591 -44804993 + HERVK9 LTR ERVK 2428 2786 -3130 13695 98 11 28 chrY 6708591 6710548 -44803036 + HERVK9 LTR ERVK 3711 5635 -281 2192 130 14 13 chrY 6710572 6710923 -44802661 + HERVK9 LTR ERVK 5635 5913 -3 3369 139 0 10 chrY 6710925 6711441 -44802143 + MER9 LTR ERVK 1 511 0 646 269 40 45 chrY 6711450 6711803 -44801781 + MER31-int LTR ERV1 2939 3289 -1647 836 247 63 26 chrY 6711888 6712159 -44801425 + MER31-int LTR ERV1 3342 3622 -1314 2502 154 26 100 chrY 6712159 6712812 -44800772 + MER4B LTR ERV1 4 779 0 265 178 59 69 chrY 6712822 6712923 -44800661 + MER31-int LTR ERV1 3623 3722 -1214 1937 264 79 14 chrY 6713015 6713900 -44799684 - L1M4 LINE L1 -698 5486 4559 21 0 0 0 chrY 6715433 6715454 -44798130 + AT_rich Low_complexity Low_complexity 1 21 0 182 277 59 30 chrY 6717266 6717367 -44796217 + L2 LINE L2 2321 2424 -890 1726 183 7 0 chrY 6717369 6717658 -44795926 + AluSx SINE Alu 3 293 -19 1648 184 0 19 chrY 6717693 6718009 -44795575 + AluSx SINE Alu 1 310 -2 2123 163 14 0 chrY 6718114 6718464 -44795120 - THE1A LTR MaLR 0 355 1 233 284 114 49 chrY 6718932 6719519 -44794065 - L1M4 LINE L1 -2401 3745 3121 307 322 9 0 chrY 6719558 6719673 -44793911 - L1M4 LINE L1 -3124 3022 2907 1916 291 34 23 chrY 6719696 6720228 -44793356 - HAL1 LINE L1 -458 2049 1503 1821 132 7 65 chrY 6720228 6720538 -44793046 - AluSp SINE Alu -21 292 1 1916 291 34 23 chrY 6720538 6720829 -44792755 - HAL1 LINE L1 -1004 1503 1217 205 218 128 26 chrY 6721107 6721185 -44792399 - L2 LINE L2 -50 3222 3137 1815 167 3 0 chrY 6721217 6721505 -44792079 + AluY SINE Alu 4 292 -19 1967 147 3 0 chrY 6721984 6722290 -44791294 + AluSp SINE Alu 1 307 -6 381 314 5 64 chrY 6722653 6722841 -44790743 + MER5B DNA MER1_type 2 178 0 1489 211 43 0 chrY 6722940 6723219 -44790365 - AluSg SINE Alu -19 291 1 24 0 0 0 chrY 6723219 6723243 -44790341 + AT_rich Low_complexity Low_complexity 1 24 0 1240 184 7 72 chrY 6723260 6723553 -44790031 + AluJb SINE Alu 7 280 -32 267 183 11 65 chrY 6723559 6723652 -44789932 + L1MC4 LINE L1 6614 6701 -1341 200 100 25 0 chrY 6726337 6726377 -44787207 + (TG)n Simple_repeat Simple_repeat 2 42 0 558 293 57 41 chrY 6727486 6727875 -44785709 + SST1 Satellite centromeric 207 601 -962 250 281 68 20 chrY 6728579 6728725 -44784859 + SST1 Satellite centromeric 1386 1538 -25 210 71 0 0 chrY 6728770 6728798 -44784786 + (TG)n Simple_repeat Simple_repeat 1 28 0 230 274 79 55 chrY 6731165 6731329 -44782255 + SST1 Satellite centromeric 800 967 -596 188 26 0 105 chrY 6731598 6731636 -44781948 + (CA)n Simple_repeat Simple_repeat 1 34 0 255 348 35 31 chrY 6732488 6732775 -44780809 - SST1 Satellite centromeric -962 601 314 208 247 25 0 chrY 6734011 6734092 -44779492 + (CA)n Simple_repeat Simple_repeat 1 83 0 228 86 0 0 chrY 6736478 6736513 -44777071 + (CA)n Simple_repeat Simple_repeat 2 36 0 276 299 0 0 chrY 6736847 6736924 -44776660 - SST1 Satellite centromeric -324 1239 1163 437 300 60 51 chrY 6737405 6737875 -44775709 - SST1 Satellite centromeric -952 611 138 21 0 0 0 chrY 6738414 6738435 -44775149 + AT_rich Low_complexity Low_complexity 1 21 0 4177 111 5 3 chrY 6740058 6740644 -44772940 - LTR14C LTR ERVK 0 587 1 15128 108 13 1 chrY 6740644 6742749 -44770835 - HERVK14C LTR ERVK 0 7417 5289 4512 94 19 5 chrY 6742730 6743359 -44770225 - HERVK14C LTR ERVK -4863 2554 1917 * 11917 122 13 22 chrY 6743351 6745143 -44768441 - HERVK14C LTR ERVK -5640 1777 1 4069 98 3 46 chrY 6745143 6745478 -44768106 - LTR14C LTR ERVK 0 587 288 1902 121 48 0 chrY 6745478 6745751 -44767833 + AluY SINE Alu 1 286 -25 4069 98 3 46 chrY 6745751 6746028 -44767556 - LTR14C LTR ERVK -299 288 1 1662 236 25 25 chrY 6746758 6747207 -44766377 - LTR2 LTR ERV1 0 449 1 9338 214 26 17 chrY 6747207 6749207 -44764377 - Harlequin LTR ERV1 -1 6895 4877 16388 171 6 8 chrY 6749318 6752626 -44760958 - HERVE LTR ERV1 -2016 5797 2507 9877 198 23 14 chrY 6752633 6754907 -44758677 - HERVE LTR ERV1 -5440 2373 1 1574 225 70 16 chrY 6754907 6755131 -44758453 - LTR2 LTR ERV1 0 449 239 183 80 0 0 chrY 6755131 6755156 -44758428 + (CAGAA)n Simple_repeat Simple_repeat 1 25 0 1574 225 70 16 chrY 6755156 6755357 -44758227 - LTR2 LTR ERV1 -210 239 1 200 149 21 0 chrY 6755945 6755992 -44757592 + (CA)n Simple_repeat Simple_repeat 1 48 0 198 0 0 0 chrY 6756247 6756269 -44757315 + (T)n Simple_repeat Simple_repeat 1 22 0 501 279 58 58 chrY 6756924 6757318 -44756266 - SST1 Satellite centromeric -963 600 207 306 269 81 31 chrY 6758166 6758326 -44755258 - SST1 Satellite centromeric -11 1552 1385 235 303 0 0 chrY 6758478 6758554 -44755030 - SST1 Satellite centromeric -325 1238 1163 272 306 68 62 chrY 6759051 6759518 -44754066 - SST1 Satellite centromeric -962 601 132 468 278 69 71 chrY 6760664 6761056 -44752528 - SST1 Satellite centromeric -25 1538 1148 465 271 80 74 chrY 6761524 6762012 -44751572 - SST1 Satellite centromeric -962 601 111 2572 164 29 134 chrY 6762916 6763677 -44749907 - LTR1 LTR ERV1 -104 681 1 284 239 122 94 chrY 6763782 6763962 -44749622 - LTR33A LTR ERVL -275 248 64 464 202 12 0 chrY 6764877 6764961 -44748623 - AluJo SINE Alu -23 289 205 * 657 221 89 13 chrY 6764953 6764997 -44748587 - AluJo SINE Alu -132 180 141 186 43 0 0 chrY 6764997 6765020 -44748564 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 657 221 89 13 chrY 6765020 6765133 -44748451 - AluJo SINE Alu -171 141 11 207 0 0 0 chrY 6765410 6765433 -44748151 + (TA)n Simple_repeat Simple_repeat 1 23 0 360 94 0 0 chrY 6767366 6767419 -44746165 + (TCC)n Simple_repeat Simple_repeat 1 53 0 1684 49 0 0 chrY 6768526 6768731 -44744853 - L1PA2 LINE L1 0 6155 5951 2223 92 9 3 chrY 6768732 6769048 -44744536 - L1PA6 LINE L1 0 6154 5837 756 71 20 0 chrY 6769048 6769147 -44744437 + L1P3 LINE L1 5432 5532 -622 313 263 75 38 chrY 6774399 6774532 -44739052 + MLT1F LTR MaLR 370 507 -35 865 226 5 0 chrY 6775034 6775220 -44738364 + AluSg/x SINE Alu 123 309 -1 1168 196 3 93 chrY 6775260 6775571 -44738013 + AluSg SINE Alu 5 287 -13 183 188 0 0 chrY 6775584 6775632 -44737952 + GA-rich Low_complexity Low_complexity 2 49 0 285 177 11 0 chrY 6775653 6775718 -44737866 - L1MA4 LINE L1 -11 6289 6223 499 279 35 0 chrY 6775720 6775892 -44737692 + L1MA4 LINE L1 5999 6176 -124 230 167 0 121 chrY 6775909 6775939 -44737645 + L1MA3 LINE L1 6152 6171 -134 1260 230 10 30 chrY 6775939 6776243 -44737341 + AluJo SINE Alu 2 299 -13 230 167 0 121 chrY 6776243 6776278 -44737306 + L1MA3 LINE L1 6171 6209 -96 1504 191 4 14 chrY 6776319 6776597 -44736987 - AluSx SINE Alu -35 277 3 257 201 87 57 chrY 6778522 6778725 -44734859 + L1P1 LINE L1 5257 5471 -684 301 91 0 0 chrY 6778728 6778772 -44734812 - L1PA6 LINE L1 -5 6149 6106 512 222 67 39 chrY 6778788 6778968 -44734616 + L1M4 LINE L1 5417 5601 -573 368 213 24 37 chrY 6779122 6779271 -44734313 + L1M4 LINE L1 5284 5423 -755 298 146 0 0 chrY 6779271 6779319 -44734265 - L1PA6 LINE L1 -1 6153 6106 545 225 60 33 chrY 6779333 6779515 -44734069 + L1M4 LINE L1 5415 5601 -577 721 181 33 106 chrY 6779700 6779814 -44733770 + L1M4 LINE L1 5306 5427 -757 309 125 0 0 chrY 6779814 6779862 -44733722 - L1PA6 LINE L1 -1 6153 6106 721 181 33 106 chrY 6779862 6780053 -44733531 + L1M4 LINE L1 5427 5601 -583 322 231 175 7 chrY 6780213 6780356 -44733228 + L1MB5 LINE L1 5254 5420 -746 298 143 0 0 chrY 6780357 6780406 -44733178 - L1PA6 LINE L1 0 6154 6106 1208 254 117 34 chrY 6780420 6781095 -44732489 + L1MB5 LINE L1 5415 6161 -13 805 248 26 26 chrY 6782548 6782778 -44730806 + AluJo SINE Alu 1 230 -82 21 0 0 0 chrY 6783993 6784014 -44729570 + AT_rich Low_complexity Low_complexity 1 21 0 1665 176 0 10 chrY 6784291 6784592 -44728992 - AluSg SINE Alu -12 298 1 1852 142 7 3 chrY 6786593 6786895 -44726689 + AluSc SINE Alu 1 303 -6 207 178 89 0 chrY 6787061 6787106 -44726478 - L2 LINE L2 -12 3260 3212 1838 147 0 26 chrY 6787372 6787685 -44725899 - AluSc SINE Alu -3 306 2 23 78 0 0 chrY 6788973 6789024 -44724560 + AT_rich Low_complexity Low_complexity 1 51 0 324 48 0 0 chrY 6789053 6789095 -44724489 + (CA)n Simple_repeat Simple_repeat 2 43 0 285 149 231 67 chrY 6789537 6789569 -44724015 - L1MA7 LINE L1 -33 6258 6233 865 236 80 22 chrY 6789569 6789845 -44723739 - AluJb SINE Alu -9 293 2 285 149 231 67 chrY 6789845 6789946 -44723638 - L1MA7 LINE L1 -58 6233 6103 382 147 0 44 chrY 6790036 6790104 -44723480 + MER1B DNA MER1_type 211 275 -64 324 182 0 0 chrY 6790261 6790316 -44723268 + MER1B DNA MER1_type 263 317 -16 496 241 9 0 chrY 6790326 6790434 -44723150 - FLAM_C SINE Alu -32 111 3 1941 148 0 0 chrY 6794989 6795272 -44718312 + AluSq SINE Alu 1 283 -30 276 287 17 9 chrY 6795991 6796106 -44717478 + L2 LINE L2 2196 2311 -1003 238 340 38 0 chrY 6798066 6798225 -44715359 + L1M3 LINE L1 5353 5517 -654 23 0 0 0 chrY 6798350 6798373 -44715211 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chrY 6798993 6799027 -44714557 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chrY 6802843 6802865 -44710719 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 183 167 0 0 chrY 6804070 6804112 -44709472 + (TGG)n Simple_repeat Simple_repeat 1 42 0 450 75 0 0 chrY 6806638 6806705 -44706879 + (TG)n Simple_repeat Simple_repeat 2 68 0 221 203 0 47 chrY 6808989 6809053 -44704531 + CT-rich Low_complexity Low_complexity 1 61 0 379 326 102 10 chrY 6809158 6809354 -44704230 - L1M4c LINE L1 -5021 1363 1150 907 253 27 54 chrY 6809363 6809659 -44703925 - AluJb SINE Alu -12 300 13 329 320 39 0 chrY 6809772 6809875 -44703709 - L1MCa LINE L1 -4325 2101 1995 * 354 277 0 43 chrY 6809823 6809917 -44703667 + L1MC4 LINE L1 6614 6703 -1339 333 315 0 22 chrY 6809871 6809963 -44703621 - L1MC4 LINE L1 -1339 6703 6614 * 22 0 0 0 chrY 6810045 6810067 -44703517 + AT_rich Low_complexity Low_complexity 1 22 0 1788 255 31 75 chrY 6810103 6811076 -44702508 - L1MA8 LINE L1 0 6291 5371 21 36 0 0 chrY 6861849 6861877 -44651707 + AT_rich Low_complexity Low_complexity 1 28 0 382 268 178 13 chrY 6861920 6862077 -44651507 - L2 LINE L2 -13 3300 3118 357 320 140 30 chrY 6862268 6862640 -44650944 - L2 LINE L2 -1310 2004 1592 837 308 82 6 chrY 6865021 6865339 -44648245 + MER93a LTR ERV1 61 402 0 759 257 123 62 chrY 6865368 6865742 -44647842 + Charlie2 DNA MER1_type 1864 2260 -602 23459 74 6 4 chrY 6865742 6868889 -44644695 - L1PA4 LINE L1 -2906 3240 89 16899 50 2 2 chrY 6868889 6871806 -44641778 + L1PA4 LINE L1 3240 6155 0 1873 154 10 0 chrY 6871811 6871830 -44641754 - AluSp SINE Alu -11 302 285 306 0 0 0 chrY 6871830 6871864 -44641720 + (TG)n Simple_repeat Simple_repeat 1 34 0 1873 154 10 0 chrY 6871864 6872136 -44641448 - AluSp SINE Alu -28 285 8 349 296 22 22 chrY 6872266 6872401 -44641183 + L1ME4a LINE L1 5971 6105 -16 1256 304 96 64 chrY 6873804 6874150 -44639434 - L2 LINE L2 -1177 2137 1804 1290 137 152 41 chrY 6874150 6874420 -44639164 - AluSg SINE Alu 0 300 1 1256 304 96 64 chrY 6874420 6875008 -44638576 - L2 LINE L2 -1510 1804 1173 309 26 0 0 chrY 6875655 6875693 -44637891 + (TG)n Simple_repeat Simple_repeat 1 38 0 726 306 24 5 chrY 6875779 6875985 -44637599 + MIR SINE MIR 1 210 -52 213 233 41 55 chrY 6875983 6876056 -44637528 + MIR SINE MIR 70 141 -67 * 1734 152 7 42 chrY 6876259 6876568 -44637016 + AluSg SINE Alu 1 298 -12 195 246 168 54 chrY 6876752 6876919 -44636665 + L2 LINE L2 3126 3311 -2 186 43 0 0 chrY 6877234 6877257 -44636327 + (CA)n Simple_repeat Simple_repeat 2 24 0 474 18 0 0 chrY 6877554 6877609 -44635975 + (TTA)n Simple_repeat Simple_repeat 2 56 0 256 341 65 0 chrY 6878201 6878324 -44635260 - MIR SINE MIR -71 191 61 1339 182 17 14 chrY 6878501 6878792 -44634792 + L1MA8 LINE L1 5998 6289 -2 2614 209 69 27 chrY 6878868 6879451 -44634133 - MER90 LTR ERV1 -7 607 1 281 276 138 29 chrY 6879886 6880125 -44633459 + L1ME LINE L1 5554 5818 -303 237 184 11 23 chrY 6880229 6880240 -44633344 + (TA)n Simple_repeat Simple_repeat 2 12 -75 1601 201 3 10 chrY 6880240 6880528 -44633056 + AluJb SINE Alu 1 286 -26 237 184 11 23 chrY 6880528 6880603 -44632981 + (TA)n Simple_repeat Simple_repeat 12 87 0 2371 269 55 51 chrY 6880825 6881748 -44631836 + L1MEc LINE L1 46 975 -5421 1733 135 50 0 chrY 6881748 6882030 -44631554 + AluY SINE Alu 1 296 -15 2371 269 55 51 chrY 6882030 6882168 -44631416 + L1MEc LINE L1 975 1111 -5285 1112 225 38 86 chrY 6882183 6882578 -44631006 + MLT1B LTR MaLR 11 386 -4 4059 255 55 32 chrY 6882648 6883378 -44630206 + L1MEc LINE L1 2384 3096 -3119 1629 180 7 0 chrY 6883378 6883650 -44629934 + AluSx SINE Alu 1 274 -38 4059 255 55 32 chrY 6883650 6884730 -44628854 + L1MEc LINE L1 3096 4236 -1979 5741 76 6 12 chrY 6884739 6885585 -44627999 + L1PA3 LINE L1 1 969 -5177 4107 19 0 0 chrY 6885581 6886067 -44627517 - L1HS LINE L1 -821 5325 4840 * 7407 9 0 2 chrY 6886065 6886909 -44626675 + L1HS LINE L1 5314 6155 0 14314 54 20 1 chrY 6887088 6888970 -44624614 + L1PA3 LINE L1 936 2854 -3292 17584 42 6 1 chrY 6888977 6891973 -44621611 + L1PA3 LINE L1 3170 6155 0 458 266 78 13 chrY 6891982 6892290 -44621294 + L1M4 LINE L1 4181 4508 -1638 1262 278 56 24 chrY 6892396 6892983 -44620601 + L1M4 LINE L1 4526 5131 -1015 950 223 73 92 chrY 6892997 6893365 -44620219 - MLT1A1 LTR MaLR -4 361 1 2287 265 73 21 chrY 6893366 6894023 -44619561 - MLT1A1-int LTR MaLR -1 1734 1044 1725 144 92 50 chrY 6894058 6894221 -44619363 + THE1C LTR MaLR 1 156 -219 2387 133 19 0 chrY 6894221 6894589 -44618995 + THE1C LTR MaLR 1 375 0 1725 144 92 50 chrY 6894589 6894785 -44618799 + THE1C LTR MaLR 156 375 0 3752 217 24 45 chrY 6894785 6895515 -44618069 - MLT1A1-int LTR MaLR -642 938 392 2424 80 0 3 chrY 6895515 6895827 -44617757 - AluY SINE Alu 0 311 1 3752 217 24 45 chrY 6895827 6896210 -44617374 - MLT1A1-int LTR MaLR -1188 392 2 377 299 17 0 chrY 6896252 6896369 -44617215 - MLT1A2 LTR MaLR -72 302 184 663 281 208 19 chrY 6896401 6896761 -44616823 + L2 LINE L2 2880 3307 -6 433 116 72 7 chrY 6897215 6897353 -44616231 + (TA)n Simple_repeat Simple_repeat 1 147 0 1450 161 65 8 chrY 6897463 6897723 -44615861 + AluSg SINE Alu 1 275 -35 1738 158 7 27 chrY 6897827 6898124 -44615460 - AluJb SINE Alu -21 291 1 4038 55 0 0 chrY 6898496 6899002 -44614582 - L1PA3 LINE L1 -3 6152 5647 1895 169 0 3 chrY 6899352 6899654 -44613930 + AluSg SINE Alu 1 301 -9 301 340 44 50 chrY 6899900 6900059 -44613525 - MIR3 SINE MIR -49 159 2 365 329 112 38 chrY 6900570 6900883 -44612701 + L3 LINE CR1 715 1050 -527 531 246 29 41 chrY 6900890 6901061 -44612523 + MIR SINE MIR 94 262 0 654 344 120 41 chrY 6901066 6901551 -44612033 + L3 LINE CR1 1054 1576 -1 2080 147 3 0 chrY 6901823 6902135 -44611449 + AluSp SINE Alu 1 313 0 1977 157 0 10 chrY 6902196 6902501 -44611083 + AluSx SINE Alu 1 302 -10 28 29 0 0 chrY 6903027 6903062 -44610522 + AT_rich Low_complexity Low_complexity 1 35 0 505 238 47 12 chrY 6903127 6903299 -44610285 + L1MA4 LINE L1 5999 6176 -124 1146 234 13 57 chrY 6903312 6903611 -44609973 + AluJo SINE Alu 14 299 -13 1400 201 36 14 chrY 6903672 6903951 -44609633 - AluSx SINE Alu -25 287 3 1447 182 37 4 chrY 6904442 6904711 -44608873 + AluSg SINE Alu 12 289 -21 1089 197 112 22 chrY 6906633 6907034 -44606550 + L1MB5 LINE L1 5254 5690 -490 794 244 23 18 chrY 6907150 6907433 -44606151 + L1MB5 LINE L1 5905 6184 0 252 0 0 0 chrY 6908661 6908689 -44604895 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4018 47 0 8 chrY 6908689 6909184 -44604400 - L1PA3 LINE L1 -18 6137 5647 28 0 0 0 chrY 6909292 6909320 -44604264 + AT_rich Low_complexity Low_complexity 1 28 0 801 288 33 25 chrY 6909427 6909701 -44603883 + AluJo SINE Alu 1 276 -36 26 0 0 0 chrY 6910817 6910843 -44602741 + AT_rich Low_complexity Low_complexity 1 26 0 1694 189 0 3 chrY 6911119 6911426 -44602158 - AluSg SINE Alu 0 310 5 181 353 94 0 chrY 6913162 6913247 -44600337 + L2 LINE L2 2909 3001 -312 1759 150 11 4 chrY 6913408 6913715 -44599869 + AluSc SINE Alu 1 309 0 2023 131 0 7 chrY 6913880 6914178 -44599406 + AluY SINE Alu 1 296 -15 1735 171 7 7 chrY 6914517 6914809 -44598775 - AluSc SINE Alu -17 292 1 22 70 0 0 chrY 6916085 6916128 -44597456 + AT_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chrY 6916153 6916178 -44597406 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chrY 6916315 6916350 -44597234 + AT_rich Low_complexity Low_complexity 1 35 0 254 125 243 97 chrY 6916620 6916656 -44596928 - L1MA7 LINE L1 -29 6262 6233 656 241 130 11 chrY 6916656 6916800 -44596784 - AluJb SINE Alu -8 294 168 333 0 0 0 chrY 6916800 6916837 -44596747 + (TG)n Simple_repeat Simple_repeat 2 38 0 656 241 130 11 chrY 6916837 6916953 -44596631 - AluJb SINE Alu -134 168 3 254 125 243 97 chrY 6916953 6917060 -44596524 - L1MA7 LINE L1 -58 6233 6098 306 206 0 44 chrY 6917145 6917213 -44596371 + MER1B DNA MER1_type 211 275 -64 225 254 0 0 chrY 6917373 6917428 -44596156 + MER1B DNA MER1_type 266 320 -13 456 242 0 0 chrY 6917449 6917548 -44596036 - AluJ/FLAM SINE Alu -211 101 3 315 288 99 101 chrY 6918967 6919791 -44593793 - L1M2a LINE L1 -5490 1678 1185 279 0 0 0 chrY 6922554 6922585 -44590999 + (TG)n Simple_repeat Simple_repeat 2 32 0 1706 189 0 0 chrY 6922585 6922870 -44590714 - AluSx SINE Alu -27 285 1 23 0 0 0 chrY 6922939 6922962 -44590622 + AT_rich Low_complexity Low_complexity 1 23 0 1673 178 4 0 chrY 6923179 6923449 -44590135 + AluSq SINE Alu 13 283 -30 409 314 125 29 chrY 6924170 6924450 -44589134 + L2 LINE L2 2196 2502 -812 315 0 0 0 chrY 6925550 6925585 -44587999 + (TG)n Simple_repeat Simple_repeat 2 36 0 255 224 0 0 chrY 6925585 6925652 -44587932 + T-rich Low_complexity Low_complexity 1 67 0 205 311 27 27 chrY 6925735 6925809 -44587775 - MER5A DNA MER1_type -73 116 43 271 269 69 34 chrY 6926254 6926429 -44587155 + L1M2 LINE L1 5340 5520 -780 34 24 0 0 chrY 6928498 6928539 -44585045 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrY 6928817 6928839 -44584745 + AT_rich Low_complexity Low_complexity 1 22 0 7288 39 11 0 chrY 6929018 6929950 -44583634 - L1PA4 LINE L1 -1 6154 5215 13158 38 1 0 chrY 6929950 6931622 -44581962 + L1PA4 LINE L1 3555 5228 -918 3217 173 35 54 chrY 6931636 6932452 -44581132 + L1PA16 LINE L1 5357 6157 -9 21 36 0 0 chrY 6933408 6933436 -44580148 + AT_rich Low_complexity Low_complexity 1 28 0 1609 182 26 0 chrY 6937973 6938242 -44575342 - AluSx SINE Alu -30 282 7 1155 248 3 18 chrY 6938252 6938538 -44575046 - AluJo SINE Alu -23 289 8 1762 92 11 8 chrY 6939223 6939540 -44574044 - L1PA5 LINE L1 -580 5574 5328 4116 86 2 9 chrY 6939540 6940105 -44573479 + L1PA5 LINE L1 5586 6154 0 807 250 68 0 chrY 6943086 6943278 -44570306 + AluJb SINE Alu 78 282 -30 303 28 0 0 chrY 6943303 6943339 -44570245 + (CA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chrY 6943787 6943834 -44569750 + AT_rich Low_complexity Low_complexity 1 47 0 239 286 6 57 chrY 6944455 6944630 -44568954 + GA-rich Low_complexity Low_complexity 1 166 0 1100 95 14 0 chrY 6949258 6949406 -44564178 + MER11B LTR ERVK 1 150 -1086 6408 102 14 24 chrY 6949482 6949503 -44564081 + MER11C LTR ERVK 101 121 -950 6630 29 9 0 chrY 6949503 6950238 -44563346 - L1PA2 LINE L1 -5 6150 5409 6408 102 14 24 chrY 6950238 6951182 -44562402 + MER11C LTR ERVK 121 1057 -14 230 257 68 0 chrY 6954232 6954380 -44559204 + (TA)n Simple_repeat Simple_repeat 2 159 0 31 0 0 0 chrY 6954407 6954438 -44559146 + AT_rich Low_complexity Low_complexity 1 31 0 10622 139 45 9 chrY 6954740 6956577 -44557007 + L1PA7 LINE L1 2706 4608 -1538 1602 95 9 3 chrY 6956589 6957422 -44556162 + L1PA7 LINE L1 5231 6150 -4 283 239 49 7 chrY 6957422 6957564 -44556020 + (TA)n Simple_repeat Simple_repeat 1 148 0 184 259 86 0 chrY 6957888 6957946 -44555638 + L2 LINE L2 2548 2610 -704 3172 38 18 0 chrY 6958233 6958627 -44554957 - L1PA4 LINE L1 -1445 4701 4301 7455 54 3 16 chrY 6958627 6960105 -44553479 + L1PA4 LINE L1 4687 6153 -2 21 36 0 0 chrY 6961131 6961159 -44552425 + AT_rich Low_complexity Low_complexity 1 28 0 504 45 0 0 chrY 6961171 6961238 -44552346 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1390 228 0 3 chrY 6961244 6961547 -44552037 + AluSg SINE Alu 1 302 -8 35 24 0 0 chrY 6961808 6961850 -44551734 + AT_rich Low_complexity Low_complexity 1 42 0 1002 292 29 18 chrY 6962355 6962636 -44550948 - AluJo SINE Alu -18 284 1 27 0 0 0 chrY 6962744 6962771 -44550813 + AT_rich Low_complexity Low_complexity 1 27 0 687 253 34 34 chrY 6964057 6964235 -44549349 - AluJb SINE Alu -133 179 2 422 277 39 0 chrY 6964236 6964390 -44549194 - L1MA4 LINE L1 -124 6176 6013 687 143 0 0 chrY 6964403 6964501 -44549083 - AluS SINE Alu -214 99 2 1452 118 5 0 chrY 6964558 6964761 -44548823 - AluSp SINE Alu -8 305 102 1322 254 3 17 chrY 6965063 6965351 -44548233 + AluSx SINE Alu 3 286 -16 1208 269 3 29 chrY 6965413 6965722 -44547862 - AluJo SINE Alu 0 302 2 3509 140 283 0 chrY 6965726 6965947 -44547637 - LTR12 LTR ERV1 0 826 669 2872 7 0 0 chrY 6965947 6966253 -44547331 - AluY SINE Alu -5 306 1 3509 140 283 0 chrY 6966253 6966675 -44546909 - LTR12 LTR ERV1 -157 669 1 3681 132 74 0 chrY 6966678 6967256 -44546328 - HERV9 LTR ERV1 -21 8378 7758 1767 159 19 34 chrY 6967252 6968269 -44545315 - HERV17 LTR ERV1 -5176 1720 706 * 5748 130 6 10 chrY 6968270 6969139 -44544445 - HERV17 LTR ERV1 -3455 4944 4080 20153 126 29 47 chrY 6969146 6972675 -44540909 - HERV17 LTR ERV1 -236 478 43 229 250 0 0 chrY 6972682 6972730 -44540854 - LTR30 LTR ERV1 -673 49 2 288 333 19 74 chrY 6972730 6972884 -44540700 + L1M3de LINE L1 473 613 -6040 1978 148 3 3 chrY 6972884 6973188 -44540396 - AluSx SINE Alu -8 304 1 288 333 19 74 chrY 6973188 6973249 -44540335 + L1M3de LINE L1 613 676 -5977 1305 234 40 64 chrY 6973523 6973946 -44539638 + MSTB LTR MaLR 1 413 -13 1607 203 0 13 chrY 6974154 6974465 -44539119 - AluY SINE Alu -3 308 2 602 350 61 34 chrY 6974553 6974996 -44538588 + L1M3b LINE L1 56 510 -5771 261 0 0 0 chrY 6976010 6976039 -44537545 + (CA)n Simple_repeat Simple_repeat 2 30 0 451 243 7 112 chrY 6976283 6976435 -44537149 + FLAM_C SINE Alu 2 137 -6 226 194 0 0 chrY 6977099 6977135 -44536449 + polypyrimidine Low_complexity Low_complexity 1 36 0 943 134 11 11 chrY 6977135 6977314 -44536270 + CT-rich Low_complexity Low_complexity 1 179 0 1415 237 0 17 chrY 6977340 6977631 -44535953 - AluSx SINE Alu -16 286 1 1238 248 3 3 chrY 6977671 6977982 -44535602 - AluSx SINE Alu -1 311 1 311 270 56 24 chrY 6978447 6978573 -44535011 - MLT1F LTR MaLR -27 515 386 573 15 0 0 chrY 6979402 6979468 -44534116 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 27 62 0 0 chrY 6979474 6979522 -44534062 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chrY 6979790 6979815 -44533769 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chrY 6980004 6980035 -44533549 + AT_rich Low_complexity Low_complexity 1 31 0 308 267 22 22 chrY 6981420 6981510 -44532074 - L1MC4 LINE L1 -1339 6703 6614 252 235 0 0 chrY 6981511 6981562 -44532022 - MER4-int LTR ERV1 -5437 1161 1111 223 121 0 55 chrY 6981630 6981721 -44531863 + (TA)n Simple_repeat Simple_repeat 1 86 0 520 253 181 48 chrY 6982002 6982251 -44531333 + AluJo SINE Alu 11 292 -10 23 33 0 0 chrY 6982399 6982429 -44531155 + AT_rich Low_complexity Low_complexity 1 30 0 249 286 91 0 chrY 6983184 6983261 -44530323 + LTR33A LTR ERVL 102 185 -338 636 165 8 25 chrY 6983426 6983547 -44530037 + LTR1 LTR ERV1 1 119 -666 2329 190 35 53 chrY 6983552 6984156 -44529428 + LTR1 LTR ERV1 89 681 -104 225 319 79 75 chrY 6985045 6985550 -44528034 + SST1 Satellite centromeric 94 600 -963 180 167 0 0 chrY 6986451 6986499 -44527085 + (TG)n Simple_repeat Simple_repeat 1 48 0 497 304 66 33 chrY 6987529 6987924 -44525660 + SST1 Satellite centromeric 117 524 -1039 273 29 0 0 chrY 6988647 6988681 -44524903 + (TG)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chrY 6988945 6988973 -44524611 + AT_rich Low_complexity Low_complexity 1 28 0 381 331 50 41 chrY 6989523 6989982 -44523602 + SST1 Satellite centromeric 139 601 -962 350 300 74 74 chrY 6990790 6991180 -44522404 + SST1 Satellite centromeric 1163 1552 -11 287 313 63 52 chrY 6993713 6994096 -44519488 + SST1 Satellite centromeric 138 524 -1039 230 326 11 11 chrY 6994653 6994745 -44518839 + SST1 Satellite centromeric 1148 1239 -324 185 83 28 0 chrY 6995106 6995142 -44518442 + (TG)n Simple_repeat Simple_repeat 1 37 0 283 317 50 50 chrY 6996230 6996628 -44516956 + SST1 Satellite centromeric 207 604 -959 310 309 77 77 chrY 6997106 6997511 -44516073 + SST1 Satellite centromeric 1148 1552 -11 339 149 0 0 chrY 6997535 6997609 -44515975 + (TG)n Simple_repeat Simple_repeat 1 74 0 33 25 0 0 chrY 6998451 6998491 -44515093 + AT_rich Low_complexity Low_complexity 1 40 0 6451 25 0 0 chrY 6998556 6999292 -44514292 - L1PA2 LINE L1 -8 6147 5412 222 62 0 0 chrY 6999458 6999490 -44514094 + (TG)n Simple_repeat Simple_repeat 1 32 0 195 42 0 0 chrY 6999613 6999637 -44513947 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chrY 6999708 6999732 -44513852 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 289 292 78 41 chrY 7000104 7000347 -44513237 + SST1 Satellite centromeric 29 280 -1283 245 290 103 19 chrY 7001376 7001531 -44512053 + SST1 Satellite centromeric 1385 1552 -11 180 97 0 0 chrY 7001555 7001586 -44511998 + (TG)n Simple_repeat Simple_repeat 2 32 0 362 295 80 66 chrY 7002600 7003112 -44510472 + SST1 Satellite centromeric 83 601 -962 542 306 66 46 chrY 7005000 7005454 -44508130 + SST1 Satellite centromeric 138 600 -963 230 287 85 60 chrY 7007409 7007726 -44505858 + SST1 Satellite centromeric 137 461 -1102 277 283 97 48 chrY 7008564 7008709 -44504875 + SST1 Satellite centromeric 1387 1538 -25 247 250 22 0 chrY 7008712 7008804 -44504780 + (TG)n Simple_repeat Simple_repeat 1 94 0 232 303 92 60 chrY 7009852 7010103 -44503481 + SST1 Satellite centromeric 138 396 -1167 263 319 60 57 chrY 7011379 7011627 -44501957 + SST1 Satellite centromeric 352 600 -963 285 214 20 10 chrY 7012471 7012569 -44501015 + (TG)n Simple_repeat Simple_repeat 2 100 0 186 71 0 0 chrY 7012793 7012821 -44500763 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 374 296 68 52 chrY 7013309 7013559 -44500025 + SST1 Satellite centromeric 349 602 -961 234 107 27 53 chrY 7014424 7014499 -44499085 + (TG)n Simple_repeat Simple_repeat 1 73 0 266 354 51 38 chrY 7015445 7015974 -44497610 + SST1 Satellite centromeric 66 601 -962 318 26 0 0 chrY 7016903 7016942 -44496642 + (TG)n Simple_repeat Simple_repeat 1 39 0 227 338 0 0 chrY 7018909 7018986 -44494598 + SST1 Satellite centromeric 1148 1224 -339 195 42 0 0 chrY 7021728 7021752 -44491832 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 203 111 0 74 chrY 7021921 7021975 -44491609 + (TG)n Simple_repeat Simple_repeat 1 50 0 262 282 32 40 chrY 7023016 7023140 -44490444 + SST1 Satellite centromeric 138 260 -1303 231 284 14 14 chrY 7023923 7023997 -44489587 + SST1 Satellite centromeric 1156 1229 -334 180 179 0 0 chrY 7024374 7024413 -44489171 + (TG)n Simple_repeat Simple_repeat 1 39 0 1542 40 0 0 chrY 7025955 7026156 -44487428 - L1PA4 LINE L1 -2962 3184 2984 17734 46 6 1 chrY 7026156 7029114 -44484470 + L1PA4 LINE L1 3189 6154 -1 294 87 0 0 chrY 7029276 7029322 -44484262 + (TG)n Simple_repeat Simple_repeat 1 46 0 267 307 93 85 chrY 7031252 7031630 -44481954 + SST1 Satellite centromeric 1156 1536 -27 196 161 32 0 chrY 7031669 7031731 -44481853 + (TG)n Simple_repeat Simple_repeat 1 64 0 215 100 50 0 chrY 7031938 7031978 -44481606 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 381 306 50 71 chrY 7032828 7033210 -44480374 + SST1 Satellite centromeric 227 600 -963 249 98 0 0 chrY 7034418 7034459 -44479125 + (A)n Simple_repeat Simple_repeat 1 41 0 340 314 64 54 chrY 7035330 7035722 -44477862 + SST1 Satellite centromeric 207 602 -961 234 143 0 0 chrY 7036639 7036688 -44476896 + (TG)n Simple_repeat Simple_repeat 2 50 0 250 244 22 0 chrY 7038278 7038368 -44475216 + (TG)n Simple_repeat Simple_repeat 1 92 0 381 319 55 40 chrY 7039475 7039804 -44473780 + SST1 Satellite centromeric 191 524 -1039 214 256 26 0 chrY 7040753 7040831 -44472753 + (TG)n Simple_repeat Simple_repeat 1 80 0 255 266 56 56 chrY 7041804 7041947 -44471637 + SST1 Satellite centromeric 138 280 -1283 240 277 99 28 chrY 7042899 7043040 -44470544 + SST1 Satellite centromeric 1386 1536 -27 268 234 21 0 chrY 7043045 7043139 -44470445 + (TG)n Simple_repeat Simple_repeat 1 96 0 301 301 68 51 chrY 7044288 7044580 -44469004 + SST1 Satellite centromeric 228 524 -1039 207 114 0 0 chrY 7045440 7045475 -44468109 + (TG)n Simple_repeat Simple_repeat 2 36 0 237 298 32 40 chrY 7046512 7046636 -44466948 + SST1 Satellite centromeric 138 260 -1303 284 268 14 0 chrY 7047448 7047519 -44466065 + SST1 Satellite centromeric 1156 1227 -336 2094 143 0 0 chrY 7052118 7052418 -44461166 - AluY SINE Alu -11 300 1 252 154 0 0 chrY 7053881 7053933 -44459651 + (TG)n Simple_repeat Simple_repeat 1 52 0 443 300 73 53 chrY 7054906 7055429 -44458155 + SST1 Satellite centromeric 66 598 -965 309 328 58 31 chrY 7057476 7057998 -44455586 + SST1 Satellite centromeric 66 601 -962 183 80 0 0 chrY 7060064 7060089 -44453495 + (T)n Simple_repeat Simple_repeat 1 25 0 299 328 48 40 chrY 7061273 7061648 -44451936 + SST1 Satellite centromeric 223 600 -963 202 146 18 18 chrY 7062555 7062610 -44450974 + (TG)n Simple_repeat Simple_repeat 2 56 0 180 77 0 0 chrY 7062727 7062753 -44450831 + (TG)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chrY 7065125 7065147 -44448437 + (TG)n Simple_repeat Simple_repeat 1 22 0 238 330 0 0 chrY 7066999 7067093 -44446491 + SST1 Satellite centromeric 1146 1239 -324 231 61 0 0 chrY 7067452 7067485 -44446099 + (TG)n Simple_repeat Simple_repeat 2 34 0 921 256 3 36 chrY 7069771 7070132 -44443452 - LTR2 LTR ERV1 0 449 1 737 210 156 0 chrY 7070132 7070299 -44443285 - Harlequin LTR ERV1 -1 6895 6703 577 285 0 0 chrY 7070294 7070417 -44443167 - Harlequin LTR ERV1 -1307 5589 5467 * 3665 211 21 3 chrY 7070425 7071918 -44441666 - HERVE LTR ERV1 -1814 5999 4386 * 9468 182 31 21 chrY 7071917 7074226 -44439358 - HERVE LTR ERV1 -3719 4094 1684 182 279 139 0 chrY 7076131 7076210 -44437374 - L3 LINE CR1 -91 1486 1397 233 100 0 67 chrY 7077248 7077308 -44436276 + (TG)n Simple_repeat Simple_repeat 1 56 0 216 158 0 0 chrY 7077513 7077551 -44436033 + A-rich Low_complexity Low_complexity 1 38 0 200 189 40 14 chrY 7079727 7079801 -44433783 + (TG)n Simple_repeat Simple_repeat 2 77 0 2172 32 0 7 chrY 7080034 7080312 -44433272 - L1P LINE L1 -891 5255 4978 3644 68 2 4 chrY 7080312 7080446 -44433138 + L1PA3 LINE L1 5686 5819 -336 2285 85 0 10 chrY 7080446 7080739 -44432845 + AluY SINE Alu 9 298 -13 3644 68 2 4 chrY 7080739 7081074 -44432510 + L1PA3 LINE L1 5819 6155 0 22 0 0 0 chrY 7081354 7081376 -44432208 + AT_rich Low_complexity Low_complexity 1 22 0 254 60 0 80 chrY 7083282 7083332 -44430252 + (TG)n Simple_repeat Simple_repeat 2 47 0 229 286 13 13 chrY 7084093 7084170 -44429414 + SST1 Satellite centromeric 1163 1239 -324 225 250 0 0 chrY 7084503 7084563 -44429021 + (TG)n Simple_repeat Simple_repeat 1 60 0 23 0 0 0 chrY 7085072 7085095 -44428489 + AT_rich Low_complexity Low_complexity 1 23 0 225 164 33 16 chrY 7086617 7086678 -44426906 + (TG)n Simple_repeat Simple_repeat 1 62 0 231 315 0 14 chrY 7088664 7088737 -44424847 + SST1 Satellite centromeric 1156 1227 -336 208 184 20 20 chrY 7089081 7089130 -44424454 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 247 25 0 chrY 7091500 7091581 -44422003 + (TG)n Simple_repeat Simple_repeat 1 83 0 234 0 0 0 chrY 7091790 7091816 -44421768 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 271 77 15 62 chrY 7093999 7094064 -44419520 + (TG)n Simple_repeat Simple_repeat 1 62 0 262 293 90 18 chrY 7096297 7096464 -44417120 + SST1 Satellite centromeric 1374 1552 -11 387 83 0 0 chrY 7096488 7096548 -44417036 + (TG)n Simple_repeat Simple_repeat 1 60 0 456 19 0 0 chrY 7098305 7098358 -44415226 + (TG)n Simple_repeat Simple_repeat 2 54 0 191 48 0 95 chrY 7099649 7099691 -44413893 + (TG)n Simple_repeat Simple_repeat 1 38 0 252 244 23 0 chrY 7100466 7100552 -44413032 + (TG)n Simple_repeat Simple_repeat 1 88 0 196 85 0 85 chrY 7102958 7103017 -44410567 + (TG)n Simple_repeat Simple_repeat 1 54 0 186 43 0 0 chrY 7103066 7103089 -44410495 + (T)n Simple_repeat Simple_repeat 1 23 0 245 29 29 0 chrY 7103254 7103288 -44410296 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 208 156 62 0 chrY 7104766 7104830 -44408754 + (CA)n Simple_repeat Simple_repeat 2 69 0 186 39 0 0 chrY 7106480 7106506 -44407078 - L2 LINE L2 -4 3309 3284 34 24 0 0 chrY 7106888 7106929 -44406655 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrY 7107052 7107084 -44406500 + AT_rich Low_complexity Low_complexity 1 32 0 320 271 12 12 chrY 7107090 7107175 -44406409 - FRAM SINE Alu -13 153 69 421 254 18 9 chrY 7107236 7107346 -44406238 - FLAM_C SINE Alu -22 121 11 24 32 0 0 chrY 7109013 7109044 -44404540 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 7109231 7109255 -44404329 + AT_rich Low_complexity Low_complexity 1 24 0 275 108 14 40 chrY 7109522 7109596 -44403988 + (TA)n Simple_repeat Simple_repeat 1 72 0 261 278 56 24 chrY 7110425 7110551 -44403033 + MLT1F LTR MaLR 386 515 -27 1231 251 3 3 chrY 7111018 7111329 -44402255 + AluSx SINE Alu 1 311 -1 1298 227 0 31 chrY 7111373 7111664 -44401920 + AluSx SINE Alu 5 286 -26 1208 81 6 0 chrY 7111690 7111864 -44401720 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 32 26 0 0 chrY 7111968 7112007 -44401577 + AT_rich Low_complexity Low_complexity 1 39 0 340 318 105 7 chrY 7112548 7112700 -44400884 - AluJ/FLAM SINE Alu -215 87 1 746 334 42 25 chrY 7113974 7114423 -44399161 - L1M3b LINE L1 -5771 510 54 1662 189 0 30 chrY 7114531 7114832 -44398752 + AluY SINE Alu 2 293 -18 1248 213 89 55 chrY 7115038 7115441 -44398143 - MSTB LTR MaLR -4 422 6 1734 185 30 3 chrY 7115782 7116080 -44397504 + AluSx SINE Alu 1 306 -6 1962 115 140 183 chrY 7116233 7116841 -44396743 + LTR12 LTR ERV1 1 582 -132 12221 140 16 15 chrY 7116843 7119891 -44393693 + HERV9 LTR ERV1 4 3139 -5260 5050 146 3 11 chrY 7119898 7120770 -44392814 + HERV9 LTR ERV1 4080 4944 -3455 1887 201 99 62 chrY 7120771 7121621 -44391963 + HERV9 LTR ERV1 840 1720 -5176 * 3664 145 8 2 chrY 7121616 7122230 -44391354 + HERV9 LTR ERV1 7757 8374 -25 2680 129 197 69 chrY 7122237 7122847 -44390737 + LTR12 LTR ERV1 1 688 0 1032 292 10 17 chrY 7122851 7123149 -44390435 + AluJo SINE Alu 2 297 -5 30 27 0 0 chrY 7123177 7123214 -44390370 + AT_rich Low_complexity Low_complexity 1 37 0 1142 229 3 50 chrY 7123214 7123511 -44390073 - AluSx SINE Alu -17 285 3 1322 138 5 0 chrY 7123807 7124029 -44389555 + AluSp SINE Alu 96 318 0 2061 152 3 0 chrY 7124080 7124383 -44389201 + AluSx SINE Alu 1 304 -8 450 251 35 34 chrY 7125031 7125204 -44388380 + L1MA4 LINE L1 6000 6177 -125 1375 232 0 29 chrY 7125204 7125514 -44388070 + AluJo SINE Alu 2 302 -10 450 251 35 34 chrY 7125514 7125563 -44388021 + L1MA4 LINE L1 6177 6224 -78 1193 205 4 17 chrY 7125572 7125806 -44387778 - AluSx SINE Alu -26 286 56 22 35 0 0 chrY 7127107 7127136 -44386448 + AT_rich Low_complexity Low_complexity 1 29 0 569 237 38 34 chrY 7127567 7127803 -44385781 + L1M3 LINE L1 5313 5549 -631 323 175 210 21 chrY 7128007 7128150 -44385434 + L1MB5 LINE L1 5254 5423 -755 651 207 168 0 chrY 7128160 7128368 -44385216 + L1MB5 LINE L1 5504 5746 -428 839 257 70 15 chrY 7128393 7128720 -44384864 + L1MB5 LINE L1 5817 6161 -13 183 80 0 0 chrY 7128744 7128769 -44384815 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chrY 7130047 7130068 -44383516 + AT_rich Low_complexity Low_complexity 1 21 0 846 290 28 21 chrY 7130182 7130468 -44383116 + AluJo SINE Alu 1 288 -14 25 31 0 0 chrY 7131577 7131609 -44381975 + AT_rich Low_complexity Low_complexity 1 32 0 724 239 0 0 chrY 7131882 7132037 -44381547 - AluSg/x SINE Alu -17 295 141 304 179 14 21 chrY 7132039 7132184 -44381400 + (TA)n Simple_repeat Simple_repeat 2 145 0 468 201 19 9 chrY 7132222 7132756 -44380828 + (TA)n Simple_repeat Simple_repeat 1 539 0 17416 42 5 0 chrY 7132763 7135684 -44377900 - L1PA3 LINE L1 -11 6144 3213 192 208 28 0 chrY 7135684 7135790 -44377794 + (TA)n Simple_repeat Simple_repeat 1 109 0 276 291 29 0 chrY 7135916 7136088 -44377496 + (TA)n Simple_repeat Simple_repeat 1 177 0 13211 49 1 1 chrY 7136599 7138357 -44375227 - L1PA3 LINE L1 -2961 3185 1427 17318 49 0 0 chrY 7138359 7141319 -44372265 + L1PA3 LINE L1 3188 6155 0 283 392 17 0 chrY 7141859 7141979 -44371605 - L2 LINE L2 -271 3042 2921 250 219 29 29 chrY 7142535 7142640 -44370944 + (TA)n Simple_repeat Simple_repeat 1 105 0 5884 113 18 6 chrY 7142640 7143552 -44370032 - L1PA7 LINE L1 -4 6150 5232 10579 134 11 11 chrY 7143565 7145470 -44368114 - L1PA7 LINE L1 -1538 4608 2705 286 232 61 12 chrY 7145917 7146081 -44367503 + (TA)n Simple_repeat Simple_repeat 2 173 0 28 48 0 0 chrY 7154066 7154108 -44359476 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrY 7154234 7154255 -44359329 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrY 7154562 7154598 -44358986 + (TG)n Simple_repeat Simple_repeat 1 36 0 811 249 124 0 chrY 7154635 7154836 -44358748 - AluJb SINE Alu -30 282 57 1157 260 40 0 chrY 7157619 7157733 -44355851 + AluJo SINE Alu 8 116 -196 207 0 0 0 chrY 7157733 7157756 -44355828 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1157 260 40 0 chrY 7157756 7157914 -44355670 + AluJo SINE Alu 116 291 -21 1814 170 20 0 chrY 7157925 7158219 -44355365 + AluSx SINE Alu 6 305 -7 1757 183 0 3 chrY 7159999 7160283 -44353301 + AluSx SINE Alu 3 287 -25 351 0 0 0 chrY 7160283 7160322 -44353262 + (CA)n Simple_repeat Simple_repeat 2 40 0 1757 183 0 3 chrY 7160322 7160338 -44353246 + AluSx SINE Alu 287 302 -10 309 310 112 71 chrY 7163632 7163997 -44349587 + L1M2 LINE L1 758 1137 -5712 1115 169 22 13 chrY 7166166 7166397 -44347187 + LTR1 LTR ERV1 1 233 -552 * 1793 185 36 74 chrY 7166375 7166980 -44346604 + LTR1 LTR ERV1 113 694 -91 466 225 0 42 chrY 7167349 7167469 -44346115 - MER41E LTR ERV1 -397 115 1 21 0 0 0 chrY 7168299 7168320 -44345264 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 7169433 7169461 -44344123 + AT_rich Low_complexity Low_complexity 1 28 0 227 296 99 0 chrY 7170379 7170460 -44343124 - MIR SINE MIR -122 140 52 823 287 10 0 chrY 7170460 7170655 -44342929 - MIR SINE MIR -65 197 1 390 21 0 0 chrY 7170741 7170788 -44342796 + (CA)n Simple_repeat Simple_repeat 1 47 0 816 327 80 35 chrY 7171430 7172027 -44341557 + L2 LINE L2 1173 1796 -1518 938 218 38 85 chrY 7172031 7172179 -44341405 + AluSg SINE Alu 9 136 -174 8709 57 4 0 chrY 7172179 7174084 -44339500 - L1PA4 LINE L1 -1 6154 4244 938 218 38 85 chrY 7174084 7174252 -44339332 + AluSg SINE Alu 136 310 0 541 272 193 23 chrY 7174252 7174553 -44339031 + L2 LINE L2 1786 2137 -1177 35265 70 15 1 chrY 7174879 7179798 -44333786 + L1PA4 LINE L1 1 4990 -1156 1135 39 0 0 chrY 7179798 7179928 -44333656 + AluYa5/8 SINE Alu 166 295 -16 7285 38 6 0 chrY 7179928 7181094 -44332490 + L1PA4 LINE L1 4980 6150 -5 2039 124 7 7 chrY 7182392 7182674 -44330910 + AluSp SINE Alu 1 285 -28 267 31 0 0 chrY 7182674 7182706 -44330878 + (CA)n Simple_repeat Simple_repeat 1 32 0 610 247 165 28 chrY 7182792 7183083 -44330501 - Charlie2 DNA MER1_type -671 2191 1861 720 281 56 14 chrY 7183111 7183430 -44330154 - MER93b LTR ERV1 -2 371 62 192 311 16 0 chrY 7183966 7184027 -44329557 - L2 LINE L2 -6 3307 3246 24 32 0 0 chrY 7185404 7185435 -44328149 + AT_rich Low_complexity Low_complexity 1 31 0 453 333 124 13 chrY 7185795 7186167 -44327417 + L2 LINE L2 1592 2004 -1310 367 302 7 60 chrY 7186392 7186541 -44327043 + L2 LINE L2 3171 3311 -2 180 346 61 33 chrY 7186686 7186900 -44326684 + L2 LINE L2 2513 2732 -582 237 320 112 8 chrY 7187080 7187205 -44326379 + L2 LINE L2 3172 3309 -4 213 94 0 0 chrY 7187705 7187737 -44325847 + (TG)n Simple_repeat Simple_repeat 1 32 0 330 233 0 0 chrY 7187759 7187845 -44325739 + (TA)n Simple_repeat Simple_repeat 2 87 0 222 118 0 0 chrY 7187876 7187910 -44325674 + (TG)n Simple_repeat Simple_repeat 2 35 0 1184 140 6 0 chrY 7188065 7188244 -44325340 - AluSp SINE Alu -11 302 123 1613 180 10 27 chrY 7188247 7188547 -44325037 - AluSq SINE Alu -18 295 1 275 307 21 74 chrY 7188548 7188737 -44324847 + L2 LINE L2 2831 3009 -263 1688 141 33 49 chrY 7189018 7189323 -44324261 - AluY SINE Alu 0 311 12 222 211 132 26 chrY 7189364 7189440 -44324144 + L2 LINE L2 3139 3222 -50 1412 298 40 30 chrY 7189719 7190008 -44323576 + HAL1 LINE L1 1217 1502 -1005 2061 115 3 62 chrY 7190008 7190330 -44323254 + AluSp SINE Alu 1 303 -10 1412 298 40 30 chrY 7190330 7190838 -44322746 + HAL1 LINE L1 1502 2022 -485 310 313 88 25 chrY 7190854 7191330 -44322254 + L1M4 LINE L1 2860 3403 -2743 186 204 26 0 chrY 7191344 7191457 -44322127 + (TA)n Simple_repeat Simple_repeat 1 116 0 318 266 49 49 chrY 7191597 7191740 -44321844 + L1MA8 LINE L1 3594 3736 -2410 2622 116 6 0 chrY 7192225 7192578 -44321006 + THE1A LTR MaLR 1 355 0 1541 137 68 30 chrY 7192720 7192983 -44320601 - AluSx SINE Alu -39 273 1 1820 199 0 0 chrY 7193023 7193335 -44320249 - AluSx SINE Alu 0 312 1 28 48 0 0 chrY 7194525 7194567 -44319017 + AT_rich Low_complexity Low_complexity 1 42 0 2956 252 52 41 chrY 7196886 7197762 -44315822 + L1MA8 LINE L1 4559 5424 -867 207 0 0 0 chrY 7197762 7197785 -44315799 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2956 252 52 41 chrY 7197785 7198629 -44314955 + L1MA8 LINE L1 5424 6291 0 297 0 0 0 chrY 7198769 7198802 -44314782 + (CA)n Simple_repeat Simple_repeat 2 34 0 387 330 100 33 chrY 7198843 7198947 -44314637 + L1M4c LINE L1 1046 1142 -5242 999 218 40 44 chrY 7198947 7199245 -44314339 + AluJo SINE Alu 2 298 -4 387 330 100 33 chrY 7199245 7199440 -44314144 + L1M4c LINE L1 1142 1365 -5019 219 88 0 0 chrY 7199980 7200014 -44313570 + (T)n Simple_repeat Simple_repeat 1 34 0 222 117 0 50 chrY 7200225 7200285 -44313299 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 360 296 110 86 chrY 7202808 7203318 -44310266 + L1M2 LINE L1 906 1427 -5422 1500 177 54 0 chrY 7207555 7207832 -44305752 - AluSg SINE Alu -18 292 1 21 57 0 0 chrY 7207885 7207920 -44305664 + AT_rich Low_complexity Low_complexity 1 35 0 1880 160 3 0 chrY 7209544 7209832 -44303752 - AluSx SINE Alu -18 294 6 1183 244 3 7 chrY 7209844 7210127 -44303457 - AluJo SINE Alu -23 289 8 2169 108 0 10 chrY 7211390 7211696 -44301888 - AluY SINE Alu -8 303 1 860 241 123 5 chrY 7214173 7214376 -44299208 + AluJb SINE Alu 56 282 -30 216 97 0 0 chrY 7214889 7214920 -44298664 + (TA)n Simple_repeat Simple_repeat 1 31 0 4839 133 4 19 chrY 7218217 7218915 -44294669 - LTR12 LTR ERV1 0 688 1 2297 94 7 7 chrY 7221431 7221740 -44291844 + AluY SINE Alu 1 309 -2 528 122 0 0 chrY 7221742 7221824 -44291760 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 221 216 26 43 chrY 7222487 7222603 -44290981 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 23 54 0 0 chrY 7222661 7222698 -44290886 + AT_rich Low_complexity Low_complexity 1 37 0 17744 117 17 2 chrY 7223108 7226544 -44287040 + L1PA7 LINE L1 2707 6154 0 365 247 40 11 chrY 7226544 7226718 -44286866 + (TA)n Simple_repeat Simple_repeat 2 180 0 23 78 0 0 chrY 7226737 7226788 -44286796 + AT_rich Low_complexity Low_complexity 1 51 0 244 337 167 16 chrY 7227270 7227528 -44286056 + L2 LINE L2 2921 3217 -96 1260 161 5 13 chrY 7228462 7228686 -44284898 - AluSg/x SINE Alu -7 305 84 1332 219 25 7 chrY 7228701 7228984 -44284600 + AluJb SINE Alu 1 288 -24 1323 223 49 0 chrY 7229348 7229635 -44283949 - AluJo SINE Alu -4 308 8 33 35 0 17 chrY 7230724 7230742 -44282842 + AT_rich Low_complexity Low_complexity 1 18 -39 1227 198 13 76 chrY 7230742 7231045 -44282539 + AluSx SINE Alu 1 284 -28 33 35 0 17 chrY 7231045 7231084 -44282500 + AT_rich Low_complexity Low_complexity 18 57 0 1198 235 14 31 chrY 7231308 7231602 -44281982 - AluJb SINE Alu -13 299 11 698 216 0 0 chrY 7231632 7231748 -44281836 - FLAM_C SINE Alu -14 119 4 1100 60 18 12 chrY 7231765 7231932 -44281652 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 263 250 171 0 chrY 7232079 7232155 -44281429 - AluJo/FRAM SINE Alu -45 257 169 1466 218 0 7 chrY 7232155 7232440 -44281144 - AluJb SINE Alu -29 283 1 1771 178 3 3 chrY 7233429 7233732 -44279852 - AluSx SINE Alu -9 303 1 22 70 0 0 chrY 7233825 7233868 -44279716 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chrY 7234189 7234214 -44279370 + AT_rich Low_complexity Low_complexity 1 25 0 1962 147 3 6 chrY 7234445 7234757 -44278827 - AluSx SINE Alu -1 311 1 817 209 55 0 chrY 7234769 7234951 -44278633 + AluJo SINE Alu 120 311 -1 201 74 0 0 chrY 7234951 7234978 -44278606 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1411 202 10 7 chrY 7235140 7235432 -44278152 - AluSx SINE Alu -9 303 11 21 36 0 0 chrY 7235759 7235787 -44277797 + AT_rich Low_complexity Low_complexity 1 28 0 211 302 166 12 chrY 7235866 7236035 -44277549 - MIR SINE MIR -11 251 57 39607 30 17 1 chrY 7236154 7242175 -44271409 + L1HS LINE L1 3 6153 -2 255 111 0 0 chrY 7242186 7242222 -44271362 - L1M4 LINE L1 -1598 4548 4513 407 295 0 0 chrY 7245240 7245345 -44268239 + FLAM_C SINE Alu 6 110 -33 383 119 17 0 chrY 7245357 7245416 -44268168 - MER1B DNA MER1_type -13 320 261 1063 209 81 16 chrY 7245570 7245828 -44267756 - MER1B DNA MER1_type -64 275 1 673 225 42 51 chrY 7245937 7246173 -44267411 + AluJb SINE Alu 1 234 -78 22 56 0 0 chrY 7246234 7246270 -44267314 + AT_rich Low_complexity Low_complexity 1 36 0 495 48 0 0 chrY 7246690 7246752 -44266832 + (TG)n Simple_repeat Simple_repeat 2 63 0 22 94 0 0 chrY 7246813 7246877 -44266707 + AT_rich Low_complexity Low_complexity 1 64 0 1509 142 12 24 chrY 7250727 7250980 -44262604 - AluSc SINE Alu -45 264 15 963 263 27 44 chrY 7251147 7251444 -44262140 - AluJo SINE Alu -10 292 1 27 0 0 0 chrY 7251551 7251578 -44262006 + AT_rich Low_complexity Low_complexity 1 27 0 2007 230 147 21 chrY 7252618 7253378 -44260206 - L1MB5 LINE L1 -13 6161 5306 796 119 21 21 chrY 7254465 7254608 -44258976 + AluSp/q SINE Alu 171 313 0 1405 201 29 7 chrY 7255478 7255756 -44257828 - AluSg SINE Alu -12 298 15 1380 213 17 3 chrY 7256273 7256573 -44257011 + AluJb SINE Alu 3 306 -6 234 0 0 0 chrY 7256612 7256638 -44256946 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 43446 46 2 1 chrY 7256638 7262774 -44250810 - L1PA3 LINE L1 -6 6149 9 639 266 49 73 chrY 7263034 7263165 -44250419 - MLT1A1 LTR MaLR -14 351 218 1761 145 48 3 chrY 7263165 7263455 -44250129 - AluSc SINE Alu -6 303 1 639 266 49 73 chrY 7263455 7263609 -44249975 - MLT1A1 LTR MaLR -147 218 73 467 323 13 42 chrY 7263609 7263919 -44249665 - MER31-int LTR ERV1 -261 4675 4375 377 233 22 0 chrY 7264016 7264106 -44249478 - MER31-int LTR ERV1 -721 4215 4124 425 189 24 0 chrY 7264106 7264275 -44249309 + (TA)n Simple_repeat Simple_repeat 2 174 0 60 27 0 0 chrY 7264275 7264349 -44249235 + AT_rich Low_complexity Low_complexity 1 74 0 1071 206 0 83 chrY 7264362 7264615 -44248969 - AluJb SINE Alu -80 232 1 1137 256 40 47 chrY 7264643 7265072 -44248512 - MER31-int LTR ERV1 -835 4101 3676 1475 177 0 90 chrY 7265159 7265493 -44248091 - AluSx SINE Alu -8 304 1 1973 240 77 40 chrY 7265554 7266576 -44247008 - MER31-int LTR ERV1 -3570 1366 287 351 227 0 41 chrY 7266590 7266687 -44246897 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 558 226 16 0 chrY 7267913 7268037 -44245547 + L1M2 LINE L1 13 138 -6711 3227 109 21 0 chrY 7268048 7268857 -44244727 + L1P2 LINE L1 4918 5745 -409 38950 157 5 5 chrY 7268861 7275598 -44237986 + HERVK22 LTR ERVK 52 6835 -2 2963 188 23 3 chrY 7275599 7276168 -44237416 + LTR22 LTR ERVK 1 580 0 615 259 7 0 chrY 7276779 7276918 -44236666 + MLT1D LTR MaLR 301 440 -65 435 337 80 37 chrY 7277071 7277472 -44236112 - L2 LINE L2 -460 2854 2437 2061 118 0 10 chrY 7277857 7278191 -44235393 + AluSg1 SINE Alu 1 331 0 238 342 45 0 chrY 7278208 7278319 -44235265 + MIR SINE MIR 47 162 -100 33 56 0 0 chrY 7278930 7278984 -44234600 + AT_rich Low_complexity Low_complexity 1 54 0 1749 143 15 58 chrY 7279151 7279480 -44234104 - MER52C LTR ERV1 0 1278 964 2806 45 48 0 chrY 7279950 7280342 -44233242 + L1PA4 LINE L1 5774 6182 0 291 28 0 0 chrY 7280825 7280861 -44232723 + (TG)n Simple_repeat Simple_repeat 2 37 0 1390 113 0 16 chrY 7280861 7281055 -44232529 - AluSg/x SINE Alu -25 285 95 1851 169 10 0 chrY 7281178 7281479 -44232105 + AluSx SINE Alu 1 304 -8 5169 133 91 7 chrY 7281481 7282392 -44231192 + L1PA7 LINE L1 3598 4585 -1561 288 130 0 0 chrY 7282399 7282445 -44231139 + (CA)n Simple_repeat Simple_repeat 2 47 0 6037 107 8 1 chrY 7282447 7283780 -44229804 + L1PA7 LINE L1 4807 6146 -8 214 356 144 0 chrY 7284115 7284233 -44229351 - L2 LINE L2 -1 3271 3137 305 272 41 14 chrY 7284365 7284512 -44229072 + L1M4 LINE L1 4457 4607 -1539 1759 157 21 7 chrY 7285995 7286282 -44227302 - AluSx SINE Alu -21 291 1 187 317 50 30 chrY 7286574 7286675 -44226909 + L2 LINE L2 3204 3306 -7 812 309 94 42 chrY 7286946 7287370 -44226214 + MLT1J LTR MaLR 19 464 -47 57 61 0 0 chrY 7287658 7287757 -44225827 + AT_rich Low_complexity Low_complexity 1 99 0 211 274 0 0 chrY 7287816 7287878 -44225706 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 242 65 0 0 chrY 7288007 7288038 -44225546 + THE1A LTR MaLR 325 355 0 2351 112 11 0 chrY 7288041 7288390 -44225194 + THE1A-int LTR MaLR 4 356 -1224 1463 158 26 0 chrY 7288397 7288662 -44224922 + LTR19B LTR ERV1 307 578 -2 4165 176 7 47 chrY 7288664 7289557 -44224027 + HERVFH19I LTR ERV1 1 933 -6786 1001 137 34 64 chrY 7289524 7289728 -44223856 + HERVFH19I LTR ERV1 1113 1310 -4276 * 297 221 0 35 chrY 7289718 7289804 -44223780 + L1M4 LINE L1 5743 5825 -349 * 3428 30 0 0 chrY 7289728 7290129 -44223455 + L1PA3 LINE L1 5750 6150 -5 1846 134 34 3 chrY 7290156 7290484 -44223100 + HERVFH19I LTR ERV1 1300 1637 -3949 1622 180 23 3 chrY 7290485 7290791 -44222793 + AluSp SINE Alu 1 312 -1 189 0 0 0 chrY 7291495 7291516 -44222068 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 432 286 24 8 chrY 7291856 7291982 -44221602 + MIR3 SINE MIR 66 193 -15 325 282 24 0 chrY 7292148 7292233 -44221351 - MIR SINE MIR -127 135 49 1055 194 26 77 chrY 7293111 7293462 -44220122 - MLT1B LTR MaLR -57 333 1 21 36 0 0 chrY 7293746 7293774 -44219810 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 7294303 7294323 -44219261 + (T)n Simple_repeat Simple_repeat 1 20 0 227 267 17 17 chrY 7294742 7294802 -44218782 - MIR3 SINE MIR -54 154 95 28 29 0 0 chrY 7295334 7295369 -44218215 + AT_rich Low_complexity Low_complexity 1 35 0 1052 255 46 46 chrY 7296299 7296679 -44216905 + MLT1C LTR MaLR 36 418 -49 2136 118 0 0 chrY 7296679 7296983 -44216601 + AluY SINE Alu 1 304 -7 1052 255 46 46 chrY 7296983 7297034 -44216550 + MLT1C LTR MaLR 417 467 0 198 103 0 0 chrY 7297372 7297401 -44216183 + (ATG)n Simple_repeat Simple_repeat 2 30 0 413 376 24 10 chrY 7297681 7297886 -44215698 + L2 LINE L2 271 478 -2836 190 347 68 14 chrY 7297942 7298089 -44215495 + L2 LINE L2 639 793 -2521 1513 208 3 24 chrY 7298106 7298399 -44215185 - AluJo SINE Alu -19 293 7 997 262 23 30 chrY 7298569 7298874 -44214710 + MLT1E LTR MaLR 289 591 -2 23 0 0 0 chrY 7299611 7299634 -44213950 + AT_rich Low_complexity Low_complexity 1 23 0 290 45 23 0 chrY 7300600 7300644 -44212940 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 21 71 0 0 chrY 7301841 7301883 -44211701 + AT_rich Low_complexity Low_complexity 1 42 0 282 315 22 0 chrY 7302043 7302132 -44211452 - L2 LINE L2 0 3313 3223 225 0 0 0 chrY 7302700 7302725 -44210859 + (CA)n Simple_repeat Simple_repeat 2 26 0 801 236 0 22 chrY 7302726 7302904 -44210680 + FRAM SINE Alu 1 174 -2 1364 214 18 4 chrY 7302934 7303248 -44210336 - AluSx SINE Alu 0 318 1 1023 289 68 39 chrY 7303835 7304485 -44209099 + LTR65 LTR ERV1 1 669 0 252 0 0 0 chrY 7304704 7304732 -44208852 + (T)n Simple_repeat Simple_repeat 1 28 0 1248 210 70 3 chrY 7304732 7305018 -44208566 + AluSg SINE Alu 2 306 -4 307 314 164 48 chrY 7305412 7305791 -44207793 + L1MEc LINE L1 56 478 -5918 737 266 15 79 chrY 7305804 7306198 -44207386 - L1M2b LINE L1 -5277 1932 1564 1405 263 107 68 chrY 7306223 7306983 -44206601 - L1M2b LINE L1 -6420 789 1 1966 147 10 7 chrY 7307013 7307320 -44206264 - AluSx SINE Alu -4 308 1 1435 306 40 52 chrY 7307363 7308261 -44205323 - L1M3de LINE L1 -4600 2053 1167 341 238 56 24 chrY 7309068 7309194 -44204390 + MLT1F LTR MaLR 386 515 -27 1091 214 4 28 chrY 7309706 7309958 -44203626 + AluSx SINE Alu 58 303 -9 1371 206 14 31 chrY 7310005 7310296 -44203288 + AluSx SINE Alu 5 290 -22 821 144 29 0 chrY 7310329 7310502 -44203082 + GA-rich Low_complexity Low_complexity 3 180 0 351 211 0 0 chrY 7310518 7310608 -44202976 + GA-rich Low_complexity Low_complexity 2 91 0 23 33 0 0 chrY 7310679 7310709 -44202875 + AT_rich Low_complexity Low_complexity 1 30 0 384 284 52 3 chrY 7311236 7311366 -44202218 - AluJ/FLAM SINE Alu -215 87 1 255 294 11 22 chrY 7311507 7311599 -44201985 + MLT1E LTR MaLR 385 475 -118 824 347 20 32 chrY 7312665 7313111 -44200473 - L1M3de LINE L1 -5771 892 451 264 30 0 0 chrY 7313111 7313144 -44200440 + (TTG)n Simple_repeat Simple_repeat 2 34 0 824 347 20 32 chrY 7313144 7313201 -44200383 - L1M3de LINE L1 -6212 451 395 1688 185 0 14 chrY 7313236 7313545 -44200039 + AluSg SINE Alu 1 305 0 1528 201 37 62 chrY 7313745 7314182 -44199402 - MSTB LTR MaLR 0 426 1 2135 139 0 3 chrY 7314514 7314817 -44198767 + AluSx SINE Alu 1 302 -10 297 367 30 18 chrY 7314846 7315328 -44198256 - L1M3de LINE L1 -5214 1439 605 731 234 12 24 chrY 7315354 7315521 -44198063 + FRAM SINE Alu 1 165 -1 1362 229 3 14 chrY 7315583 7315871 -44197713 - AluSx SINE Alu -25 287 3 1486 197 31 3 chrY 7316335 7316624 -44196960 + AluSg SINE Alu 1 297 -13 1147 201 61 31 chrY 7318570 7318979 -44194605 + L1MB5 LINE L1 5306 5744 -439 1048 259 51 12 chrY 7319006 7319338 -44194246 + L1MB5 LINE L1 5817 6161 -13 27 0 0 0 chrY 7320703 7320730 -44192854 + AT_rich Low_complexity Low_complexity 1 27 0 800 296 19 23 chrY 7320838 7321098 -44192486 + AluJo SINE Alu 1 259 -53 1729 171 0 4 chrY 7322527 7322838 -44190746 - AluSg SINE Alu 0 310 1 22 35 0 0 chrY 7323788 7323817 -44189767 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 7324062 7324083 -44189501 + AT_rich Low_complexity Low_complexity 1 21 0 1665 171 0 10 chrY 7324368 7324661 -44188923 - AluSg SINE Alu -20 290 1 1647 151 41 0 chrY 7326665 7326959 -44186625 + AluSc SINE Alu 1 305 0 2050 132 3 3 chrY 7327439 7327743 -44185841 - AluSc SINE Alu -5 304 1 22 70 0 0 chrY 7329010 7329053 -44184531 + AT_rich Low_complexity Low_complexity 1 43 0 278 207 0 0 chrY 7329370 7329428 -44184156 + Charlie3 DNA MER1_type 2632 2689 -21 503 250 0 0 chrY 7329440 7329548 -44184036 - FLAM_C SINE Alu -33 110 3 1791 166 14 0 chrY 7334549 7334563 -44179021 - AluSx SINE Alu -12 300 288 180 111 0 0 chrY 7334563 7334590 -44178994 + (TG)n Simple_repeat Simple_repeat 2 28 0 1791 166 14 0 chrY 7334590 7334871 -44178713 - AluSx SINE Alu -24 288 1 23 0 0 0 chrY 7334936 7334959 -44178625 + AT_rich Low_complexity Low_complexity 1 23 0 1973 134 0 7 chrY 7335165 7335448 -44178136 + AluSq SINE Alu 3 283 -30 381 315 118 45 chrY 7336172 7336461 -44177123 + L2 LINE L2 2196 2505 -809 261 0 0 0 chrY 7337551 7337580 -44176004 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 284 47 47 31 chrY 7337577 7337641 -44175943 + (TTTTG)n Simple_repeat Simple_repeat 3 67 0 218 297 27 27 chrY 7337745 7337819 -44175765 - MER5A DNA MER1_type -73 116 43 335 292 34 56 chrY 7338172 7338439 -44175145 + L1M4 LINE L1 5257 5517 -661 22 0 0 0 chrY 7338560 7338582 -44175002 + AT_rich Low_complexity Low_complexity 1 22 0 524 218 82 0 chrY 7340534 7340644 -44172940 + MER41E LTR ERV1 1 119 -393 2912 169 35 56 chrY 7341000 7341710 -44171874 - LTR1 LTR ERV1 -90 695 1 250 208 42 0 chrY 7341880 7341928 -44171656 - LTR33A LTR ERVL -343 180 131 609 183 13 39 chrY 7342191 7342344 -44171240 - LTR7 LTR ERV1 0 450 302 774 134 92 14 chrY 7342388 7342546 -44171038 - LTR7 LTR ERV1 -232 218 1 3376 114 19 39 chrY 7342546 7343114 -44170470 - HERVH LTR ERV1 0 7713 7157 * 15583 156 7 30 chrY 7343109 7345831 -44167753 - HERVH LTR ERV1 -1699 6014 3357 12253 162 5 7 chrY 7345831 7347866 -44165718 - HERVH LTR ERV1 -4883 2830 800 1871 207 20 48 chrY 7347888 7348391 -44165193 - HERVH LTR ERV1 -7254 459 3 1208 203 197 29 chrY 7348393 7348778 -44164806 - LTR7 LTR ERV1 0 450 1 191 67 0 0 chrY 7348886 7348916 -44164668 - L2 LINE L2 0 3313 3284 1863 156 13 3 chrY 7349044 7349352 -44164232 - AluY SINE Alu 0 311 1 4600 94 7 0 chrY 7349677 7350260 -44163324 + LTR14C LTR ERVK 1 587 0 752 250 134 41 chrY 7350351 7350619 -44162965 - AluJo SINE Alu -1 311 19 21 0 0 0 chrY 7352963 7352984 -44160600 + AT_rich Low_complexity Low_complexity 1 21 0 2780 230 57 63 chrY 7355011 7356740 -44156844 + L1MA8 LINE L1 4558 6268 -23 25 40 0 20 chrY 7356746 7356761 -44156823 + AT_rich Low_complexity Low_complexity 1 15 -34 7376 71 1 1 chrY 7356761 7357775 -44155809 + L1PA5 LINE L1 5137 6150 -4 25 40 0 20 chrY 7357775 7357809 -44155775 + AT_rich Low_complexity Low_complexity 15 49 0 237 203 0 16 chrY 7357857 7357921 -44155663 + L1MC4 LINE L1 6647 6709 -1333 385 295 82 70 chrY 7357944 7358055 -44155529 + L1M4c LINE L1 1045 1153 -5231 1091 243 23 43 chrY 7358055 7358359 -44155225 + AluJb SINE Alu 5 302 0 385 295 82 70 chrY 7358359 7358562 -44155022 + L1M4c LINE L1 1153 1363 -5021 213 297 5 49 chrY 7359274 7359389 -44154195 + GA-rich Low_complexity Low_complexity 1 109 0 372 88 0 0 chrY 7361349 7361406 -44152178 + (CA)n Simple_repeat Simple_repeat 2 58 0 186 128 0 0 chrY 7363925 7363964 -44149620 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1201 168 2 1 chrY 7365849 7378331 -44135253 - ALR/Alpha Satellite centromeric 0 12494 1 1145 159 1 1 chrY 7378343 7382843 -44130741 - ALR/Alpha Satellite centromeric 0 4502 1 873 114 0 0 chrY 7382843 7382966 -44130618 + L1P LINE L1 16 138 -6008 255 274 0 0 chrY 7383344 7383428 -44130156 + (CA)n Simple_repeat Simple_repeat 1 84 0 439 306 0 17 chrY 7383443 7383623 -44129961 + GA-rich Low_complexity Low_complexity 2 178 0 186 192 0 0 chrY 7384716 7384768 -44128816 + (CA)n Simple_repeat Simple_repeat 1 52 0 439 267 7 7 chrY 7384774 7384909 -44128675 + GA-rich Low_complexity Low_complexity 2 136 0 859 142 0 0 chrY 7385431 7385551 -44128033 - 5S rRNA rRNA 0 121 2 281 221 10 0 chrY 7386298 7386402 -44127182 + (CA)n Simple_repeat Simple_repeat 2 106 0 2029 184 83 34 chrY 7386409 7386876 -44126708 + LTR2B LTR ERV1 1 490 0 230 206 14 0 chrY 7386912 7386985 -44126599 + GA-rich Low_complexity Low_complexity 2 75 0 301 211 26 0 chrY 7387002 7387078 -44126506 + GA-rich Low_complexity Low_complexity 6 83 0 684 149 8 8 chrY 7387896 7388017 -44125567 - 5S rRNA rRNA 0 121 1 7700 157 28 82 chrY 7388407 7390271 -44123313 - L1M1 LINE L1 -4326 3239 1477 * 9770 207 25 4 chrY 7390268 7392537 -44121047 - L1P LINE L1 -815 5331 3016 232 264 0 0 chrY 7393479 7393551 -44120033 + MER103 DNA DNA 12 83 -83 285 267 0 50 chrY 7393589 7393709 -44119875 + L2 LINE L2 1971 2084 -1230 2360 206 25 4 chrY 7394840 7395354 -44118230 - L1PB4 LINE L1 -12 6144 5620 300 205 64 13 chrY 7395629 7395707 -44117877 + L2 LINE L2 3191 3272 0 2075 187 104 38 chrY 7395922 7396451 -44117133 + LTR6A LTR ERV1 1 564 0 205 267 0 0 chrY 7396994 7397039 -44116545 + L2 LINE L2 3261 3305 -8 259 243 171 0 chrY 7397160 7397230 -44116354 + L2 LINE L2 3230 3311 -2 22 56 0 0 chrY 7397992 7398028 -44115556 + AT_rich Low_complexity Low_complexity 1 36 0 464 293 155 11 chrY 7398360 7398704 -44114880 - MLT1H1 LTR MaLR -120 422 32 2340 93 0 3 chrY 7399459 7399771 -44113813 - AluY SINE Alu 0 311 1 317 138 0 31 chrY 7399771 7399830 -44113754 - L1P LINE L1 -806 5361 5304 3659 172 30 13 chrY 7399834 7400578 -44113006 + L1PA16 LINE L1 5390 6145 -21 11204 214 98 15 chrY 7400589 7403493 -44110091 + L1M1 LINE L1 17 3159 -4406 * 32373 85 5 0 chrY 7403484 7408111 -44105473 - L1P LINE L1 -1491 4655 7 5075 264 61 17 chrY 7408125 7410010 -44103574 + L1M1 LINE L1 3288 5090 -2475 2025 147 0 7 chrY 7410010 7410334 -44103250 + AluSx SINE Alu 1 312 0 5075 264 61 17 chrY 7410334 7410703 -44102881 + L1M1 LINE L1 5090 5442 -2123 1689 229 33 14 chrY 7410703 7411123 -44102461 + MSTA LTR MaLR 1 428 0 6626 230 32 10 chrY 7411123 7412738 -44100846 + MSTA-int LTR MaLR 1 1651 0 1657 221 64 12 chrY 7412738 7413145 -44100439 + MSTA LTR MaLR 1 428 0 5075 264 61 17 chrY 7413145 7413494 -44100090 + L1M1 LINE L1 5442 5774 -1791 1904 146 6 32 chrY 7413494 7413810 -44099774 + AluSg SINE Alu 3 310 0 5075 264 61 17 chrY 7413810 7414117 -44099467 + L1M1 LINE L1 5774 6333 -1232 674 84 13 0 chrY 7414128 7414386 -44099198 - CER Satellite Satellite 0 261 1 4950 193 25 7 chrY 7414390 7414807 -44098777 + L1MA2 LINE L1 4850 5258 -1046 1787 159 39 62 chrY 7414807 7415135 -44098449 + THE1C LTR MaLR 1 320 -55 1990 139 3 0 chrY 7415135 7415422 -44098162 + AluSg1 SINE Alu 2 289 -20 1787 159 39 62 chrY 7415422 7415477 -44098107 + THE1C LTR MaLR 320 375 0 4950 193 25 7 chrY 7415477 7416491 -44097093 + L1MA2 LINE L1 5258 6304 0 688 176 103 0 chrY 7416518 7416654 -44096930 - MER4B LTR ERV1 -460 150 1 1876 159 3 0 chrY 7416977 7417318 -44096266 + AluSx SINE Alu 1 342 0 685 305 0 0 chrY 7417924 7418098 -44095486 + MER41D LTR ERV1 384 557 0 7472 321 33 19 chrY 7419264 7419425 -44094159 + PRIMA41-int LTR ERV1 1578 1735 -6021 5154 151 87 11 chrY 7419425 7420326 -44093258 - LTR5 LTR ERVK 0 969 1 7472 321 33 19 chrY 7420326 7423065 -44090519 + PRIMA41-int LTR ERV1 1735 4586 -3170 2332 139 3 27 chrY 7423065 7423274 -44090310 - THE1B LTR MaLR 0 364 166 1734 156 4 0 chrY 7423274 7423550 -44090034 + AluSx SINE Alu 23 299 -13 2332 139 3 27 chrY 7423550 7423713 -44089871 - THE1B LTR MaLR -198 166 1 7472 321 33 19 chrY 7423713 7425314 -44088270 + PRIMA41-int LTR ERV1 4586 6163 -1593 495 195 0 0 chrY 7425624 7425742 -44087842 + (TA)n Simple_repeat Simple_repeat 2 119 0 183 42 0 0 chrY 7425745 7425769 -44087815 + (T)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chrY 7427052 7427077 -44086507 + AT_rich Low_complexity Low_complexity 1 25 0 7431 35 3 0 chrY 7427077 7428594 -44084990 - L1PA3 LINE L1 0 6155 4636 5604 52 0 0 chrY 7428596 7429326 -44084258 + L1PA3 LINE L1 3900 4629 -1517 3720 254 110 25 chrY 7429329 7431207 -44082377 - L1 LINE L1 -1213 4933 2896 24 32 0 0 chrY 7431649 7431680 -44081904 + AT_rich Low_complexity Low_complexity 1 31 0 9314 141 11 3 chrY 7432497 7432756 -44080828 - L1PA7 LINE L1 -5 6464 6209 1894 152 61 3 chrY 7432756 7433052 -44080532 - AluSp SINE Alu 0 313 1 9314 141 11 3 chrY 7433052 7435154 -44078430 - L1PA7 LINE L1 -260 6209 4101 3706 246 36 40 chrY 7435168 7437003 -44076581 - L1PA7 LINE L1 -4636 1815 10 645 343 28 44 chrY 7437238 7437667 -44075917 + L1MC4a LINE L1 5491 5912 -1896 329 247 28 67 chrY 7437901 7438079 -44075505 - L1M4 LINE L1 -2554 3592 3422 527 211 11 15 chrY 7438124 7438395 -44075189 + GA-rich Low_complexity Low_complexity 1 270 0 1995 162 15 56 chrY 7438680 7439088 -44074496 + MSTD LTR MaLR 4 394 -2 983 98 8 0 chrY 7439367 7439544 -44074040 + BSR/Beta Satellite Satellite 1 178 -56 473 250 81 25 chrY 7439575 7439735 -44073849 + MIR SINE MIR 27 195 -67 324 163 100 12 chrY 7439735 7439815 -44073769 - MLT1I LTR MaLR 0 409 323 1922 136 0 0 chrY 7439850 7440129 -44073455 - AluY SINE Alu -32 279 1 270 297 77 56 chrY 7440148 7440343 -44073241 - MLT1I LTR MaLR -97 312 114 1710 171 0 3 chrY 7440355 7440647 -44072937 + AluSx SINE Alu 2 292 -20 231 263 94 41 chrY 7440804 7440975 -44072609 + LTR41 LTR ERVL 2 181 -592 321 246 27 27 chrY 7441667 7441777 -44071807 + LTR41 LTR ERVL 658 767 -6 276 349 38 0 chrY 7442060 7442166 -44071418 - MIR SINE MIR -75 133 24 488 204 64 63 chrY 7442663 7442883 -44070701 + MLT1H LTR MaLR 71 321 -228 529 299 129 48 chrY 7442995 7443208 -44070376 + L1M4 LINE L1 4957 5151 -995 2209 136 8 8 chrY 7443208 7443561 -44070023 + THE1A LTR MaLR 1 353 -2 529 299 129 48 chrY 7443561 7443641 -44069943 + L1M4 LINE L1 5151 5223 -923 1929 141 3 0 chrY 7443641 7443931 -44069653 + AluSp SINE Alu 1 291 -22 529 299 129 48 chrY 7443931 7444031 -44069553 + L1M4 LINE L1 5223 5383 -763 195 189 27 0 chrY 7444239 7444276 -44069308 + MER5A DNA MER1_type 15 52 -137 333 331 36 7 chrY 7444737 7444876 -44068708 + L1ME4a LINE L1 5975 6117 -4 1459 248 25 14 chrY 7445872 7446231 -44067353 + MLT1A1 LTR MaLR 1 363 -2 378 205 20 72 chrY 7447061 7447256 -44066328 - L1MEc LINE L1 -4158 2238 2054 2334 135 40 13 chrY 7447266 7447644 -44065940 + MSTA LTR MaLR 3 390 -38 1873 123 0 30 chrY 7447644 7447944 -44065640 - AluSc SINE Alu -18 291 1 26 0 0 0 chrY 7447962 7447988 -44065596 + AT_rich Low_complexity Low_complexity 1 26 0 5961 66 3 9 chrY 7447988 7448843 -44064741 - L1PA4 LINE L1 0 6155 5344 232 195 0 0 chrY 7448843 7448884 -44064700 + MSTA LTR MaLR 386 426 0 453 157 0 0 chrY 7448950 7449020 -44064564 - AluJ/FLAM SINE Alu -241 71 2 2023 126 3 3 chrY 7449052 7449354 -44064230 - AluSx SINE Alu -10 302 1 3004 269 75 21 chrY 7449370 7450566 -44063018 - L1MEc LINE L1 -4901 1495 235 348 290 0 11 chrY 7452677 7452770 -44060814 + L1 LINE L1 14 105 -5850 445 235 20 0 chrY 7452772 7452874 -44060710 + FLAM_C SINE Alu 3 106 -37 294 231 51 26 chrY 7452874 7452952 -44060632 + L1 LINE L1 106 185 -5770 428 263 105 12 chrY 7452952 7453123 -44060461 + L1 LINE L1 4434 4620 -1414 686 311 79 41 chrY 7453157 7453496 -44060088 + L1MA9 LINE L1 459 816 -5139 1952 137 3 0 chrY 7453496 7453803 -44059781 + AluSg1 SINE Alu 1 308 -1 686 311 79 41 chrY 7453803 7453855 -44059729 + L1MA9 LINE L1 816 865 -5090 2774 245 61 47 chrY 7453857 7455104 -44058480 + L1MA9 LINE L1 3977 5240 -794 * 41133 71 3 2 chrY 7455096 7461241 -44052343 - L1PA4 LINE L1 0 6155 7 2941 235 65 16 chrY 7461250 7462157 -44051427 + L1MA9 LINE L1 5225 6175 -25 311 179 63 74 chrY 7462181 7462262 -44051322 - L1MC4 LINE L1 -1339 6703 6622 312 27 0 0 chrY 7462262 7462299 -44051285 + (TG)n Simple_repeat Simple_repeat 2 38 0 311 179 63 74 chrY 7462299 7462312 -44051272 - L1MC4 LINE L1 -1420 6622 6610 26 0 0 0 chrY 7462348 7462374 -44051210 + AT_rich Low_complexity Low_complexity 1 26 0 197 425 0 0 chrY 7462838 7462925 -44050659 - L2 LINE L2 -488 2826 2740 189 292 45 34 chrY 7463351 7463440 -44050144 + MER5A DNA MER1_type 30 119 -70 691 184 0 0 chrY 7463443 7463557 -44050027 + AluJb SINE Alu 2 115 -197 418 255 0 39 chrY 7464421 7464574 -44049010 + CT-rich Low_complexity Low_complexity 3 149 0 384 226 0 0 chrY 7464620 7464744 -44048840 + (TG)n Simple_repeat Simple_repeat 2 125 0 657 238 0 4 chrY 7465814 7466062 -44047522 + CT-rich Low_complexity Low_complexity 1 246 0 458 279 112 29 chrY 7466093 7466433 -44047151 + LSAU Satellite Satellite 131 498 0 329 210 36 123 chrY 7467648 7467786 -44045798 + LSAU Satellite Satellite 2 127 -371 200 280 0 0 chrY 7469063 7469113 -44044471 + GA-rich Low_complexity Low_complexity 1 50 0 536 184 0 25 chrY 7470207 7470365 -44043219 + CT-rich Low_complexity Low_complexity 4 157 0 352 277 28 29 chrY 7470444 7470756 -44042828 + LSAU Satellite Satellite 141 498 0 2580 216 16 54 chrY 7471075 7471945 -44041639 + LTR5 LTR ERVK 133 969 0 1204 161 14 89 chrY 7471947 7472227 -44041357 + Tigger1 DNA MER2_type 2160 2418 0 894 196 6 0 chrY 7472231 7472399 -44041185 - AluJo/FRAM SINE Alu -9 303 135 2207 88 10 0 chrY 7472399 7472704 -44040880 - AluY SINE Alu -3 308 1 218 235 20 0 chrY 7473046 7473097 -44040487 + (TTG)n Simple_repeat Simple_repeat 2 53 0 768 240 114 38 chrY 7473103 7473420 -44040164 - L1PB4 LINE L1 -9 6147 5807 354 107 0 0 chrY 7473454 7473510 -44040074 + (TTTTC)n Simple_repeat Simple_repeat 3 58 0 331 223 48 39 chrY 7474230 7474333 -44039251 + MER89 LTR ERV1 323 426 -133 288 0 0 0 chrY 7474485 7474517 -44039067 + (CA)n Simple_repeat Simple_repeat 1 32 0 1462 190 18 0 chrY 7474653 7474932 -44038652 + AluSx SINE Alu 1 284 -28 420 231 0 37 chrY 7474953 7475061 -44038523 + AluJb SINE Alu 130 233 -69 400 138 12 12 chrY 7475113 7475193 -44038391 + CT-rich Low_complexity Low_complexity 1 80 0 186 209 0 0 chrY 7475207 7475250 -44038334 + CT-rich Low_complexity Low_complexity 4 46 0 393 140 0 0 chrY 7475254 7475311 -44038273 - AluJ/FLAM SINE Alu -242 60 4 733 214 133 85 chrY 7475387 7475544 -44038040 - AluJo SINE Alu -16 286 138 207 0 0 0 chrY 7475544 7475567 -44038017 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1942 121 3 0 chrY 7475571 7475853 -44037731 - AluSp SINE Alu -30 283 1 733 214 133 85 chrY 7475853 7475961 -44037623 - AluJo SINE Alu -166 136 3 228 48 48 71 chrY 7476027 7476039 -44037545 - Alu SINE Alu -8 292 281 225 0 0 0 chrY 7476039 7476064 -44037520 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 228 48 48 71 chrY 7476064 7476093 -44037491 - Alu SINE Alu -19 281 252 846 233 0 89 chrY 7476558 7476850 -44036734 + L1PA13 LINE L1 5888 6153 -10 242 116 23 0 chrY 7476853 7476896 -44036688 + GA-rich Low_complexity Low_complexity 1 44 0 1433 163 48 17 chrY 7476990 7477284 -44036300 - AluSx SINE Alu 0 312 10 315 114 0 0 chrY 7477389 7477433 -44036151 + AluSp/q SINE Alu 240 283 -20 278 25 0 25 chrY 7477451 7477491 -44036093 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1508 187 3 7 chrY 7477560 7477854 -44035730 + AluSg SINE Alu 8 300 -10 900 78 13 26 chrY 7477857 7478010 -44035574 + (GAAAA)n Simple_repeat Simple_repeat 2 152 0 381 191 0 0 chrY 7478035 7478145 -44035439 + CT-rich Low_complexity Low_complexity 2 111 0 597 194 0 0 chrY 7478172 7478342 -44035242 + CT-rich Low_complexity Low_complexity 2 171 0 211 194 32 16 chrY 7478345 7478407 -44035177 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 762 175 0 0 chrY 7478409 7478586 -44034998 + CT-rich Low_complexity Low_complexity 1 177 0 693 181 0 0 chrY 7478615 7478792 -44034792 + CT-rich Low_complexity Low_complexity 2 178 0 431 201 7 0 chrY 7478803 7478942 -44034642 + CT-rich Low_complexity Low_complexity 1 140 0 302 337 55 30 chrY 7478942 7479141 -44034443 - L1M4c LINE L1 -5078 1306 1103 465 238 8 24 chrY 7479179 7479305 -44034279 + MER39B LTR ERV1 284 407 -246 1812 115 0 21 chrY 7479442 7479751 -44033833 + AluSx SINE Alu 1 303 0 222 208 0 0 chrY 7480874 7480927 -44032657 + (CTG)n Simple_repeat Simple_repeat 1 53 0 527 201 6 0 chrY 7481016 7481195 -44032389 + CT-rich Low_complexity Low_complexity 1 180 0 562 183 6 11 chrY 7481219 7481399 -44032185 + CT-rich Low_complexity Low_complexity 2 180 0 328 293 113 63 chrY 7481412 7481791 -44031793 - HAL1 LINE L1 -1230 1277 880 435 162 0 0 chrY 7481799 7481898 -44031686 + CT-rich Low_complexity Low_complexity 2 100 0 277 171 43 0 chrY 7481899 7481969 -44031615 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 630 189 0 0 chrY 7481972 7482152 -44031432 + CT-rich Low_complexity Low_complexity 1 180 0 186 348 79 0 chrY 7482455 7482544 -44031040 + L2 LINE L2 2481 2576 -738 283 290 0 28 chrY 7482559 7482666 -44030918 - L1MC/D LINE L1 -591 5768 5665 183 42 0 0 chrY 7483203 7483227 -44030357 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 847 154 160 5 chrY 7483456 7483644 -44029940 - AluSg/x SINE Alu 0 312 96 189 0 0 0 chrY 7484409 7484430 -44029154 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2166 117 0 3 chrY 7484437 7484728 -44028856 - AluSc SINE Alu -18 291 2 5204 40 2 0 chrY 7487439 7488066 -44025518 - L1P LINE L1 -932 5214 4587 4752 53 0 4 chrY 7488067 7488639 -44024945 + L1PA3 LINE L1 5593 6155 0 247 288 24 40 chrY 7488736 7488861 -44024723 - LTR54B LTR ERV1 -337 161 39 622 160 0 130 chrY 7489205 7489374 -44024210 + AluJb SINE Alu 137 283 -29 1788 147 14 0 chrY 7489460 7489752 -44023832 - AluSp SINE Alu -17 296 1 23 54 0 0 chrY 7489759 7489796 -44023788 + AT_rich Low_complexity Low_complexity 1 37 0 2278 70 0 3 chrY 7489810 7490094 -44023490 - AluY SINE Alu -28 283 1 1143 253 92 82 chrY 7490098 7490695 -44022889 - L1M4 LINE L1 -946 5200 4598 360 211 84 23 chrY 7491311 7491433 -44022151 + L1MD2 LINE L1 5706 5816 -305 314 278 174 40 chrY 7492275 7492574 -44021010 - L1MC4 LINE L1 -109 7933 7595 198 71 0 0 chrY 7492579 7492607 -44020977 + (CAT)n Simple_repeat Simple_repeat 1 28 0 333 171 41 82 chrY 7493487 7493633 -44019951 + (GAGTG)n Simple_repeat Simple_repeat 4 143 0 872 172 18 6 chrY 7493798 7493961 -44019623 + L1MC1 LINE L1 6169 6333 0 207 260 0 14 chrY 7493980 7494053 -44019531 + L2 LINE L2 1721 1792 -1522 534 284 93 60 chrY 7494155 7494904 -44018680 + L2 LINE L2 2400 3295 -18 1881 141 20 10 chrY 7494980 7495279 -44018305 + AluJb SINE Alu 1 302 -10 2663 108 13 0 chrY 7495354 7495752 -44017832 + L1MA5A LINE L1 5742 6144 -153 1878 123 14 10 chrY 7495753 7496045 -44017539 + AluSx SINE Alu 6 298 -14 1563 162 30 43 chrY 7496245 7496548 -44017036 + AluJo SINE Alu 1 299 -13 2236 107 0 0 chrY 7496633 7496923 -44016661 - AluSg SINE Alu -20 290 1 2089 119 10 6 chrY 7496933 7497244 -44016340 - AluSx SINE Alu 0 312 1 2228 110 7 0 chrY 7497888 7498187 -44015397 - AluSg SINE Alu -9 301 1 1054 140 45 30 chrY 7498287 7498487 -44015097 + MER3 DNA MER1_type 1 203 -6 1823 190 67 36 chrY 7498585 7498894 -44014690 + MER63B DNA MER1_type 1 328 -734 1575 185 49 3 chrY 7498894 7499181 -44014403 - AluJo SINE Alu -12 300 1 1823 190 67 36 chrY 7499181 7499292 -44014292 + MER63B DNA MER1_type 328 434 -2 298 225 0 72 chrY 7503512 7503623 -44009961 + MER45C DNA AcHobo 488 590 -363 1260 249 65 32 chrY 7505762 7506195 -44007389 + L1MD2 LINE L1 5895 6341 -18 290 359 51 19 chrY 7506617 7506773 -44006811 + MIR3 SINE MIR 33 193 -15 1134 173 9 2 chrY 7506885 7511915 -44001669 + ALR/Alpha Satellite centromeric 1 5066 -75 235 146 0 91 chrY 7512309 7512364 -44001220 + LTR66 LTR ERVL 390 439 -171 8065 28 3 0 chrY 7512398 7514016 -43999568 + L1PA3 LINE L1 4535 6155 0 1043 174 6 1 chrY 7514031 7518791 -43994793 - ALR/Alpha Satellite centromeric 0 4780 1 9604 43 1 0 chrY 7518791 7519953 -43993631 - L1P LINE L1 -1535 4611 3449 1103 175 6 6 chrY 7519953 7523980 -43989604 - ALR/Alpha Satellite centromeric 0 4030 1 1111 30 0 0 chrY 7523980 7524111 -43989473 - L1P LINE L1 -1572 4574 4444 8198 20 0 3 chrY 7524111 7525627 -43987957 + L1PA2 LINE L1 4637 6149 -6 1210 161 5 2 chrY 7525652 7533479 -43980105 - ALR/Alpha Satellite centromeric -4 7852 1 262 175 165 0 chrY 7533517 7533614 -43979970 - ALR/Alpha Satellite centromeric -47 124 12 1108 155 7 2 chrY 7533905 7534846 -43978738 - ALR/Alpha Satellite centromeric 0 945 1 1285 154 4 4 chrY 7534851 7535091 -43978493 - L1PA3 LINE L1 0 6155 5916 1088 156 5 1 chrY 7535373 7538435 -43975149 + ALR/Alpha Satellite centromeric 1 3075 -80 1178 156 3 1 chrY 7538535 7542303 -43971281 - ALR/Alpha Satellite centromeric 0 3772 1 1115 158 9 6 chrY 7542314 7546488 -43967096 - ALR/Alpha Satellite centromeric 0 6268 695 6847 60 5 0 chrY 7546488 7547870 -43965714 - L1PA3 LINE L1 -3 6152 4767 1115 158 9 6 chrY 7547870 7548567 -43965017 - ALR/Alpha Satellite centromeric -5573 695 1 17118 64 5 3 chrY 7548572 7551646 -43961938 - L1PA3 LINE L1 0 6155 3076 4495 87 1 5 chrY 7551646 7553524 -43960060 - L1PA3 LINE L1 -4199 1947 1 1114 165 3 2 chrY 7553527 7556884 -43956700 - ALR/Alpha Satellite centromeric -1 3359 1 4935 54 3 0 chrY 7556985 7558127 -43955457 - L1PA3 LINE L1 -242 5913 4769 1112 155 8 0 chrY 7558127 7559480 -43954104 - ALR/Alpha Satellite centromeric -4 1362 1 1082 163 5 1 chrY 7559626 7567356 -43946228 - ALR/Alpha Satellite centromeric -1 7756 1 1096 164 5 0 chrY 7567370 7572040 -43941544 - ALR/Alpha Satellite centromeric 0 4690 1 2662 49 0 0 chrY 7572052 7572360 -43941224 + AluYb8 SINE Alu 1 308 -10 1120 165 6 1 chrY 7572363 7576597 -43936987 - ALR/Alpha Satellite centromeric 0 4252 1 486 155 0 0 chrY 7576603 7576700 -43936884 + (CATTC)n Simple_repeat Simple_repeat 1 97 0 332 161 32 0 chrY 7576715 7576777 -43936807 - AluS SINE Alu -14 288 225 870 148 0 0 chrY 7576789 7576951 -43936633 + (CACTC)n Simple_repeat Simple_repeat 1 162 0 204 111 0 0 chrY 7576962 7576998 -43936586 + (CATTC)n Simple_repeat Simple_repeat 3 38 0 252 234 31 0 chrY 7577006 7577070 -43936514 - AluJ/FRAM SINE Alu -12 290 225 503 171 16 0 chrY 7577070 7577193 -43936391 + (CATTC)n Simple_repeat Simple_repeat 2 126 0 277 229 0 0 chrY 7577193 7577254 -43936330 - AluJ/FRAM SINE Alu -14 288 228 894 153 0 0 chrY 7577286 7577463 -43936121 + (CATTC)n Simple_repeat Simple_repeat 3 179 0 * 935 142 6 0 chrY 7577449 7577625 -43935959 + (CACTC)n Simple_repeat Simple_repeat 1 177 0 819 169 0 0 chrY 7577638 7577810 -43935774 + (CACTC)n Simple_repeat Simple_repeat 1 172 0 891 174 4 0 chrY 7577890 7578394 -43935190 + (CATTC)n Satellite Satellite 1 506 0 298 222 16 0 chrY 7578394 7578457 -43935127 - AluJ/FRAM SINE Alu -14 288 225 236 177 32 0 chrY 7578457 7578519 -43935065 + (CATTC)n Simple_repeat Simple_repeat 2 65 0 1134 100 0 0 chrY 7578636 7578827 -43934757 + (CATTC)n Satellite Satellite 1 371 0 1134 100 0 0 chrY 7578827 7579007 -43934577 + (CATTC)n Satellite Satellite 1 180 0 338 175 16 0 chrY 7579068 7579131 -43934453 - AluJ/FRAM SINE Alu -14 288 225 1140 84 0 0 chrY 7579141 7579307 -43934277 + (CATTC)n Simple_repeat Simple_repeat 4 169 0 681 190 0 0 chrY 7579312 7579486 -43934098 + (CACTC)n Simple_repeat Simple_repeat 4 177 0 275 214 0 0 chrY 7579508 7579564 -43934020 - AluS SINE Alu -22 278 223 971 126 0 6 chrY 7579713 7579887 -43933697 + (CATTC)n Simple_repeat Simple_repeat 2 174 0 283 250 29 0 chrY 7579890 7579958 -43933626 - AluS SINE Alu -8 292 223 1011 139 0 0 chrY 7579971 7579995 -43933589 + (CACTC)n Simple_repeat Simple_repeat 1 204 0 1011 139 0 0 chrY 7579995 7580175 -43933409 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 753 159 0 0 chrY 7580229 7580392 -43933192 + (CATTC)n Simple_repeat Simple_repeat 5 167 0 318 172 31 0 chrY 7580396 7580460 -43933124 - AluJ/FRAM SINE Alu -12 290 225 360 138 0 0 chrY 7580477 7580542 -43933042 + (CACTC)n Simple_repeat Simple_repeat 1 65 0 672 136 0 0 chrY 7580742 7580867 -43932717 + (GAATG)n Simple_repeat Simple_repeat 1 125 0 329 188 31 0 chrY 7580879 7580943 -43932641 + AluS SINE Alu 224 289 -12 1026 96 0 0 chrY 7580984 7581141 -43932443 + (GAGTG)n Simple_repeat Simple_repeat 4 160 0 314 172 31 0 chrY 7581156 7581220 -43932364 + Alu SINE Alu 223 288 -12 1326 56 0 0 chrY 7581221 7581401 -43932183 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 257 250 31 0 chrY 7581418 7581482 -43932102 + AluS SINE Alu 223 288 -12 192 217 0 0 chrY 7581482 7581528 -43932056 + (GAATG)n Simple_repeat Simple_repeat 1 46 0 708 145 0 0 chrY 7581600 7581731 -43931853 + (GAATG)n Simple_repeat Simple_repeat 5 135 0 286 222 32 0 chrY 7581743 7581806 -43931778 + AluS SINE Alu 225 289 -12 1377 85 4 4 chrY 7581806 7582142 -43931442 + (GAATG)n Satellite Satellite 2 513 0 297 206 0 0 chrY 7782153 7782250 -43731334 + (GAATG)n Satellite Satellite 4 100 0 551 182 6 0 chrY 7782264 7782434 -43731150 + (GAATG)n Satellite Satellite 4 174 0 676 168 9 0 chrY 7782472 7782710 -43730874 + (GAATG)n Satellite Satellite 1 240 0 839 184 2 0 chrY 7782730 7783156 -43730428 + (GAATG)n Satellite Satellite 1 427 0 549 203 0 0 chrY 7783189 7783366 -43730218 + (GAATG)n Satellite Satellite 4 180 0 729 176 0 0 chrY 7783425 7783688 -43729896 + (GAATG)n Satellite Satellite 1 263 0 521 233 4 0 chrY 7783712 7783984 -43729600 + (GAATG)n Satellite Satellite 1 273 0 612 196 0 0 chrY 7783998 7784177 -43729407 + (GAATG)n Satellite Satellite 2 180 0 1101 167 1 0 chrY 7784193 7784902 -43728682 + (GAATG)n Satellite Satellite 1 710 0 795 180 0 3 chrY 7784943 7785309 -43728275 + (GAATG)n Satellite Satellite 1 364 0 678 195 0 0 chrY 7785330 7785676 -43727908 + (GAATG)n Satellite Satellite 1 346 0 486 216 0 0 chrY 7785695 7785871 -43727713 + (GAATG)n Satellite Satellite 4 179 0 675 205 5 3 chrY 7785907 7786294 -43727290 + (GAATG)n Satellite Satellite 1 388 0 1093 150 2 6 chrY 7786327 7787166 -43726418 + (GAATG)n Satellite Satellite 4 1011 0 204 150 25 0 chrY 7787166 7787206 -43726378 + (AATTG)n Simple_repeat Simple_repeat 2 42 0 366 224 0 0 chrY 7787210 7787357 -43726227 + (GAATG)n Satellite Satellite 4 150 0 735 190 0 0 chrY 7787390 7787747 -43725837 + (GAATG)n Satellite Satellite 1 357 0 654 179 0 0 chrY 7787780 7787953 -43725631 + (GAATG)n Satellite Satellite 3 175 0 747 169 0 0 chrY 7787983 7788160 -43725424 + (GAATG)n Satellite Satellite 4 180 0 693 195 0 7 chrY 7788173 7788846 -43724738 + (GAATG)n Satellite Satellite 1 668 0 939 156 0 4 chrY 7788866 7789225 -43724359 + (GAATG)n Satellite Satellite 1 536 0 258 205 0 0 chrY 7789280 7789358 -43724226 + (GAATG)n Satellite Satellite 3 80 0 773 154 0 16 chrY 7789422 7789604 -43723980 + (GAATG)n Satellite Satellite 1 179 0 222 180 0 0 chrY 7789623 7789684 -43723900 + (GAATG)n Satellite Satellite 5 65 0 801 153 0 0 chrY 7789703 7789879 -43723705 + (GAATG)n Satellite Satellite 4 179 0 885 171 0 0 chrY 7789957 7790355 -43723229 + (GAATG)n Satellite Satellite 1 398 0 445 211 6 6 chrY 7790391 7790571 -43723013 + (GAATG)n Satellite Satellite 1 180 0 836 173 6 4 chrY 7790627 7791113 -43722471 + (GAATG)n Satellite Satellite 1 487 0 432 179 0 0 chrY 7791161 7791278 -43722306 + (GAATG)n Satellite Satellite 4 120 0 651 178 0 0 chrY 7791296 7791465 -43722119 + (GAATG)n Satellite Satellite 1 169 0 730 171 4 4 chrY 7791477 7791719 -43721865 + (GAATG)n Satellite Satellite 1 242 0 945 172 0 0 chrY 7791745 7792046 -43721538 + (GAATG)n Satellite Satellite 1 301 0 1086 140 0 0 chrY 7792066 7792411 -43721173 + (GAATG)n Satellite Satellite 1 345 0 810 157 3 0 chrY 7792463 7792813 -43720771 + (GAATG)n Satellite Satellite 1 351 0 468 223 0 0 chrY 7792834 7793009 -43720575 + (GAATG)n Satellite Satellite 5 179 0 870 156 0 0 chrY 7793033 7793487 -43720097 + (GAATG)n Satellite Satellite 1 454 0 839 154 0 15 chrY 7793529 7793855 -43719729 + (GAATG)n Satellite Satellite 1 321 0 709 197 3 3 chrY 7793903 7794312 -43719272 + (GAATG)n Satellite Satellite 1 409 0 1158 85 0 0 chrY 7794358 7794535 -43719049 + (GAATG)n Satellite Satellite 4 180 0 1434 72 0 2 chrY 7794557 7794905 -43718679 + (GAATG)n Satellite Satellite 1 525 0 213 267 12 0 chrY 7794910 7794996 -43718588 + (AATAG)n Simple_repeat Simple_repeat 3 89 0 600 196 0 0 chrY 7794998 7795177 -43718407 + (GAATG)n Satellite Satellite 1 179 0 879 188 1 0 chrY 7795213 7796319 -43717265 + (GAATG)n Satellite Satellite 1 1107 0 705 199 0 0 chrY 7796332 7796765 -43716819 + (GAATG)n Satellite Satellite 1 433 0 468 214 0 0 chrY 7796777 7796950 -43716634 + (GAATG)n Satellite Satellite 2 174 0 939 152 0 4 chrY 7796966 7797326 -43716258 + (GAATG)n Satellite Satellite 2 538 0 816 151 0 0 chrY 7797352 7797531 -43716053 + (GAATG)n Satellite Satellite 1 179 0 684 193 0 0 chrY 7797578 7798015 -43715569 + (GAATG)n Satellite Satellite 1 437 0 960 124 0 0 chrY 7798033 7798211 -43715373 + (GAATG)n Satellite Satellite 1 178 0 795 171 0 0 chrY 7798285 7798532 -43715052 + (GAATG)n Satellite Satellite 1 247 0 840 156 0 0 chrY 7798547 7798727 -43714857 + (GAATG)n Satellite Satellite 1 180 0 714 143 0 0 chrY 7798747 7798894 -43714690 + (GAATG)n Satellite Satellite 4 150 0 1032 138 0 9 chrY 7798957 7799315 -43714269 + (GAATG)n Satellite Satellite 4 528 0 213 138 62 0 chrY 7799319 7799384 -43714200 - HSATII Satellite Satellite -82 88 20 655 164 6 6 chrY 7799394 7799571 -43714013 + (GAATG)n Satellite Satellite 4 180 0 798 116 6 28 chrY 7799594 7799775 -43713809 + (GAATG)n Satellite Satellite 4 180 0 366 197 0 0 chrY 7799793 7799910 -43713674 + (GAATG)n Satellite Satellite 4 120 0 564 200 0 0 chrY 7799943 7800123 -43713461 + (GAATG)n Satellite Satellite 1 180 0 872 128 0 23 chrY 7800169 7800388 -43713196 + (GAATG)n Satellite Satellite 1 214 0 689 163 6 0 chrY 7800423 7800601 -43712983 + (GAATG)n Satellite Satellite 2 180 0 864 167 3 3 chrY 7800638 7801839 -43711745 + (GAATG)n Satellite Satellite 1 1201 0 375 186 0 0 chrY 7801892 7801989 -43711595 + (GAATG)n Satellite Satellite 4 100 0 609 184 0 0 chrY 7802053 7802211 -43711373 + (GAATG)n Satellite Satellite 2 159 0 909 156 0 0 chrY 7802228 7802622 -43710962 + (GAATG)n Satellite Satellite 1 394 0 813 188 1 0 chrY 7802667 7803410 -43710174 + (GAATG)n Satellite Satellite 1 744 0 954 204 3 3 chrY 7803421 7804158 -43709426 + (GAATG)n Satellite Satellite 1 737 0 1023 132 0 4 chrY 7804206 7804563 -43709021 + (GAATG)n Satellite Satellite 2 535 0 1065 153 0 0 chrY 7804613 7804925 -43708659 + (GAATG)n Satellite Satellite 1 312 0 396 221 0 0 chrY 7804958 7805107 -43708477 + (GAATG)n Satellite Satellite 2 150 0 792 173 0 0 chrY 7805124 7805303 -43708281 + (GAATG)n Satellite Satellite 1 179 0 923 141 3 14 chrY 7805324 7805686 -43707898 + (GAATG)n Satellite Satellite 1 358 0 660 172 0 0 chrY 7805705 7805879 -43707705 + (GAATG)n Satellite Satellite 4 177 0 429 223 0 0 chrY 7805944 7806110 -43707474 + (GAATG)n Satellite Satellite 3 168 0 786 179 0 0 chrY 7806123 7806606 -43706978 + (GAATG)n Satellite Satellite 1 483 0 939 151 0 20 chrY 7806638 7807002 -43706582 + (GAATG)n Satellite Satellite 5 529 0 735 191 0 9 chrY 7807061 7807603 -43705981 + (GAATG)n Satellite Satellite 1 536 0 564 148 0 0 chrY 7807636 7807758 -43705826 + (GAATG)n Satellite Satellite 4 125 0 923 171 1 4 chrY 7807780 7808595 -43704989 + (GAATG)n Satellite Satellite 1 812 0 729 158 0 0 chrY 7808627 7808851 -43704733 + (GAATG)n Satellite Satellite 1 224 0 486 216 0 0 chrY 7808863 7809034 -43704550 + (GAATG)n Satellite Satellite 4 174 0 746 182 3 0 chrY 7809084 7809431 -43704153 + (GAATG)n Satellite Satellite 1 348 0 999 168 2 0 chrY 7809475 7809985 -43703599 + (GAATG)n Satellite Satellite 1 511 0 876 143 7 4 chrY 7810039 7810331 -43703253 + (GAATG)n Satellite Satellite 1 293 0 906 163 1 4 chrY 7810389 7810930 -43702654 + (GAATG)n Satellite Satellite 2 717 0 975 103 0 0 chrY 7810965 7811120 -43702464 + (GAATG)n Satellite Satellite 4 158 0 356 217 13 0 chrY 7811139 7811296 -43702288 + (GAATG)n Satellite Satellite 1 159 0 885 163 0 0 chrY 7811363 7811725 -43701859 + (GAATG)n Satellite Satellite 1 362 0 588 195 0 0 chrY 7811776 7811950 -43701634 + (GAATG)n Satellite Satellite 2 175 0 789 170 3 0 chrY 7811966 7812327 -43701257 + (GAATG)n Satellite Satellite 1 362 0 510 220 0 0 chrY 7812365 7812542 -43701042 + (GAATG)n Satellite Satellite 4 180 0 749 165 0 16 chrY 7812561 7812887 -43700697 + (GAATG)n Satellite Satellite 1 320 0 981 142 0 9 chrY 7812900 7813256 -43700328 + (GAATG)n Satellite Satellite 4 525 0 249 198 0 0 chrY 7813336 7813417 -43700167 + (GAATG)n Satellite Satellite 4 84 0 993 150 3 4 chrY 7813468 7813988 -43699596 + (GAATG)n Satellite Satellite 2 697 0 761 146 0 20 chrY 7814009 7814269 -43699315 + (GAATG)n Satellite Satellite 1 254 0 420 227 0 0 chrY 7814289 7814465 -43699119 + (GAATG)n Satellite Satellite 5 180 0 669 194 0 0 chrY 7814484 7814664 -43698920 + (GAATG)n Satellite Satellite 1 180 0 600 208 4 0 chrY 7814714 7815230 -43698354 + (GAATG)n Satellite Satellite 1 518 0 716 194 2 0 chrY 7815243 7815679 -43697905 + (GAATG)n Satellite Satellite 1 437 0 721 147 4 22 chrY 7815719 7815956 -43697628 + (GAATG)n Satellite Satellite 1 232 0 957 99 12 6 chrY 7815993 7816164 -43697420 + (GAATG)n Satellite Satellite 4 175 0 582 184 0 0 chrY 7816271 7816450 -43697134 + (GAATG)n Satellite Satellite 2 180 0 411 216 0 0 chrY 7816471 7816638 -43696946 + (GAATG)n Satellite Satellite 4 170 0 966 154 0 6 chrY 7816671 7817483 -43696101 + (GAATG)n Satellite Satellite 1 806 0 612 143 0 0 chrY 7817561 7817687 -43695897 + (GAATG)n Satellite Satellite 5 130 0 525 199 0 0 chrY 7817727 7817888 -43695696 + (GAATG)n Satellite Satellite 4 164 0 860 184 2 0 chrY 7817927 7818551 -43695033 + (GAATG)n Satellite Satellite 1 625 0 594 189 0 0 chrY 7818586 7818761 -43694823 + (GAATG)n Satellite Satellite 4 178 0 960 150 0 0 chrY 7818779 7819045 -43694539 + (GAATG)n Satellite Satellite 1 266 0 407 225 6 0 chrY 7819118 7819287 -43694297 + (GAATG)n Satellite Satellite 2 171 0 405 172 0 0 chrY 7819353 7819446 -43694138 + (GAATG)n Satellite Satellite 3 95 0 831 195 0 6 chrY 7819463 7820151 -43693433 + (GAATG)n Satellite Satellite 1 684 0 692 183 2 9 chrY 7820167 7820718 -43692866 + (GAATG)n Satellite Satellite 1 547 0 633 185 0 0 chrY 7820740 7820913 -43692671 + (GAATG)n Satellite Satellite 4 176 0 378 239 0 0 chrY 7820932 7821108 -43692476 + (GAATG)n Satellite Satellite 4 179 0 831 147 0 0 chrY 7821141 7821318 -43692266 + (GAATG)n Satellite Satellite 4 180 0 1200 140 0 2 chrY 7821392 7821986 -43691598 + (GAATG)n Satellite Satellite 1 772 0 1200 89 0 0 chrY 7821986 7822166 -43691418 + (GAATG)n Satellite Satellite 1 180 0 939 148 0 0 chrY 7822300 7822648 -43690936 + (GAATG)n Satellite Satellite 1 348 0 441 167 0 0 chrY 7822715 7822817 -43690767 + (GAATG)n Satellite Satellite 4 105 0 750 174 0 0 chrY 7822856 7823028 -43690556 + (GAATG)n Satellite Satellite 3 174 0 1080 152 0 7 chrY 7823075 7823612 -43689972 + (GAATG)n Satellite Satellite 4 708 0 453 226 0 0 chrY 7823660 7823837 -43689747 + (GAATG)n Satellite Satellite 4 180 0 291 141 0 0 chrY 7823885 7823949 -43689635 + (GAATG)n Satellite Satellite 2 65 0 678 184 0 0 chrY 7823961 7824140 -43689444 + (GAATG)n Satellite Satellite 1 179 0 797 160 0 19 chrY 7824160 7824425 -43689159 + (GAATG)n Satellite Satellite 1 259 0 537 208 0 0 chrY 7824445 7824623 -43688961 + (GAATG)n Satellite Satellite 3 180 0 870 158 4 0 chrY 7824660 7824906 -43688678 + (GAATG)n Satellite Satellite 1 247 0 753 168 0 0 chrY 7824955 7825134 -43688450 + (GAATG)n Satellite Satellite 1 179 0 943 174 2 10 chrY 7825149 7825863 -43687721 + (GAATG)n Satellite Satellite 4 884 0 1278 134 0 4 chrY 7825882 7826479 -43687105 + (GAATG)n Satellite Satellite 2 771 0 548 205 6 0 chrY 7826496 7826662 -43686922 + (GAATG)n Satellite Satellite 4 170 0 599 192 6 0 chrY 7826725 7826902 -43686682 + (GAATG)n Satellite Satellite 3 180 0 1116 126 0 0 chrY 7826941 7827402 -43686182 + (GAATG)n Satellite Satellite 1 461 0 1404 110 0 10 chrY 7827419 7827913 -43685671 + (GAATG)n Satellite Satellite 1 666 0 747 196 0 0 chrY 7827935 7828283 -43685301 + (GAATG)n Satellite Satellite 1 348 0 800 174 1 5 chrY 7828310 7829018 -43684566 + (GAATG)n Satellite Satellite 1 705 0 1028 155 5 10 chrY 7829048 7830329 -43683255 + (GAATG)n Satellite Satellite 4 1425 0 252 218 0 0 chrY 7830364 7830451 -43683133 + (GAATG)n Satellite Satellite 4 90 0 720 165 0 0 chrY 7830515 7830673 -43682911 + (GAATG)n Satellite Satellite 2 159 0 897 155 2 7 chrY 7830689 7831045 -43682539 + (GAATG)n Satellite Satellite 3 528 0 419 174 9 0 chrY 7831079 7831194 -43682390 + (GAATG)n Satellite Satellite 4 119 0 744 179 0 0 chrY 7831217 7831576 -43682008 + (GAATG)n Satellite Satellite 1 359 0 734 174 0 11 chrY 7831631 7831997 -43681587 + (GAATG)n Satellite Satellite 1 361 0 198 256 0 0 chrY 7832019 7832156 -43681428 + (GAATG)n Satellite Satellite 2 138 0 1071 167 2 5 chrY 7832197 7832622 -43680962 + (GAATG)n Satellite Satellite 1 602 0 1071 112 0 0 chrY 7832622 7832801 -43680783 + (GAATG)n Satellite Satellite 1 179 0 270 204 0 0 chrY 7832887 7832975 -43680609 + (GAATG)n Satellite Satellite 2 89 0 731 200 0 10 chrY 7833016 7833511 -43680073 + (GAATG)n Satellite Satellite 1 489 0 624 200 0 0 chrY 7833531 7833711 -43679873 + (GAATG)n Satellite Satellite 1 180 0 1062 126 0 1 chrY 7833722 7834215 -43679369 + (GAATG)n Satellite Satellite 1 672 0 753 175 0 0 chrY 7834267 7834773 -43678811 + (GAATG)n Satellite Satellite 1 506 0 810 183 0 0 chrY 7834791 7835304 -43678280 + (GAATG)n Satellite Satellite 1 513 0 1110 146 0 0 chrY 7835321 7835673 -43677911 + (GAATG)n Satellite Satellite 1 352 0 864 183 0 1 chrY 7835766 7836484 -43677100 + (GAATG)n Satellite Satellite 1 717 0 918 139 0 0 chrY 7836500 7836727 -43676857 + (GAATG)n Satellite Satellite 1 227 0 612 202 0 0 chrY 7836767 7837100 -43676484 + (GAATG)n Satellite Satellite 1 333 0 828 154 0 0 chrY 7837143 7837499 -43676085 + (GAATG)n Satellite Satellite 1 356 0 421 186 7 7 chrY 7837520 7837660 -43675924 + (GAATG)n Satellite Satellite 3 142 0 612 196 0 0 chrY 7837672 7837851 -43675733 + (GAATG)n Satellite Satellite 2 180 0 443 196 0 27 chrY 7837897 7838081 -43675503 + (GAATG)n Satellite Satellite 2 180 0 921 168 0 9 chrY 7838122 7838549 -43675035 + (GAATG)n Satellite Satellite 1 422 0 699 183 0 0 chrY 7838561 7838741 -43674843 + (GAATG)n Satellite Satellite 1 180 0 777 162 0 0 chrY 7838777 7838950 -43674634 + (GAATG)n Satellite Satellite 2 174 0 1016 106 6 0 chrY 7838976 7839155 -43674429 + (GAATG)n Satellite Satellite 1 180 0 879 171 0 0 chrY 7839179 7839536 -43674048 + (GAATG)n Satellite Satellite 1 357 0 478 198 11 0 chrY 7839569 7839746 -43673838 + (GAATG)n Satellite Satellite 2 180 0 1014 120 0 0 chrY 7839769 7839944 -43673640 + (GAATG)n Satellite Satellite 4 178 0 873 187 0 0 chrY 7839967 7840322 -43673262 + (GAATG)n Satellite Satellite 1 355 0 675 178 0 0 chrY 7840346 7840593 -43672991 + (GAATG)n Satellite Satellite 1 247 0 1107 145 1 5 chrY 7840646 7841466 -43672118 + (GAATG)n Satellite Satellite 1 988 0 972 121 0 0 chrY 7841466 7841639 -43671945 + (GAATG)n Satellite Satellite 2 174 0 206 259 9 0 chrY 7841660 7841776 -43671808 + (AATAG)n Simple_repeat Simple_repeat 5 121 0 957 153 0 0 chrY 7841794 7842154 -43671430 + (GAATG)n Satellite Satellite 1 360 0 771 170 0 0 chrY 7842195 7842699 -43670885 + (GAATG)n Satellite Satellite 1 504 0 973 174 2 2 chrY 7842728 7843188 -43670396 + (GAATG)n Satellite Satellite 1 460 0 738 161 0 0 chrY 7843202 7843376 -43670208 + (GAATG)n Satellite Satellite 4 177 0 1101 128 0 0 chrY 7843409 7843779 -43669805 + (GAATG)n Satellite Satellite 1 370 0 1020 129 0 14 chrY 7843820 7844181 -43669403 + (GAATG)n Satellite Satellite 1 356 0 543 201 0 0 chrY 7844219 7844398 -43669186 + (GAATG)n Satellite Satellite 2 180 0 741 172 0 0 chrY 7844414 7844594 -43668990 + (GAATG)n Satellite Satellite 1 180 0 798 186 2 14 chrY 7844615 7845057 -43668527 + (GAATG)n Satellite Satellite 1 436 0 515 201 6 0 chrY 7845068 7845247 -43668337 + (GAATG)n Satellite Satellite 1 180 0 587 174 0 22 chrY 7845261 7845445 -43668139 + (GAATG)n Satellite Satellite 1 180 0 1149 155 0 2 chrY 7845481 7846306 -43667278 + (GAATG)n Satellite Satellite 1 1001 0 813 149 0 0 chrY 7846369 7846544 -43667040 + (GAATG)n Satellite Satellite 1 175 0 885 162 0 11 chrY 7846563 7847025 -43666559 + (GAATG)n Satellite Satellite 1 456 0 599 199 3 14 chrY 7847037 7847390 -43666194 + (GAATG)n Satellite Satellite 1 348 0 569 194 6 0 chrY 7847417 7847582 -43666002 + (GAATG)n Satellite Satellite 4 169 0 765 158 0 0 chrY 7847600 7847777 -43665807 + (GAATG)n Satellite Satellite 4 180 0 1239 161 0 1 chrY 7847790 7848372 -43665212 + (GAATG)n Satellite Satellite 1 761 0 849 180 0 0 chrY 7848405 7848739 -43664845 + (GAATG)n Satellite Satellite 1 334 0 782 148 6 0 chrY 7848776 7848952 -43664632 + (GAATG)n Satellite Satellite 3 179 0 798 157 0 0 chrY 7848975 7849221 -43664363 + (GAATG)n Satellite Satellite 1 246 0 1005 126 0 11 chrY 7849235 7849596 -43663988 + (GAATG)n Satellite Satellite 1 533 0 687 203 0 0 chrY 7849679 7850222 -43663362 + (GAATG)n Satellite Satellite 1 543 0 861 140 0 0 chrY 7850234 7850398 -43663186 + (GAATG)n Satellite Satellite 2 165 0 282 132 0 0 chrY 7850410 7850463 -43663121 + (GAATG)n Satellite Satellite 2 54 0 747 174 5 0 chrY 7850480 7850917 -43662667 + (GAATG)n Satellite Satellite 1 439 0 947 124 6 0 chrY 7850942 7851119 -43662465 + (GAATG)n Satellite Satellite 3 180 0 357 191 0 0 chrY 7851142 7851252 -43662332 + (GAATG)n Satellite Satellite 5 114 0 735 169 0 0 chrY 7851272 7851449 -43662135 + (GAATG)n Satellite Satellite 3 179 0 180 111 0 0 chrY 7851505 7851532 -43662052 + (GAGTG)n Simple_repeat Simple_repeat 4 30 0 951 130 0 0 chrY 7851551 7852024 -43661560 + (GAATG)n Satellite Satellite 1 473 0 450 207 0 0 chrY 7852036 7852200 -43661384 + (GAATG)n Satellite Satellite 1 164 0 852 162 3 0 chrY 7852230 7852574 -43661010 + (GAATG)n Satellite Satellite 1 345 0 1239 119 0 0 chrY 7852595 7852954 -43660630 + (GAATG)n Satellite Satellite 1 359 0 1016 132 3 6 chrY 7852969 7853504 -43660080 + (GAATG)n Satellite Satellite 1 712 0 804 163 0 0 chrY 7853546 7853794 -43659790 + (GAATG)n Satellite Satellite 1 248 0 2172 165 13 10 chrY 7853800 7854194 -43659390 - Tigger2a DNA MER2_type -39 395 1 505 214 62 24 chrY 7854233 7854413 -43659171 - MLT1I LTR MaLR -3 406 244 1773 212 49 16 chrY 7854783 7855235 -43658349 - MLT1C LTR MaLR 0 467 1 707 328 21 18 chrY 7855430 7855759 -43657825 + MLT1I LTR MaLR 5 334 -75 429 309 62 29 chrY 7855779 7856051 -43657533 + L1ME3A LINE L1 5597 5877 -293 597 106 28 28 chrY 7856396 7856576 -43657008 + (TA)n Simple_repeat Simple_repeat 1 180 0 37 39 0 0 chrY 7856576 7856627 -43656957 + AT_rich Low_complexity Low_complexity 1 51 0 617 85 34 34 chrY 7856627 7856803 -43656781 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 329 75 118 0 chrY 7856770 7856931 -43656653 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 286 340 65 1 chrY 7857630 7857891 -43655693 - L1MDa LINE L1 -860 1630 1397 705 259 109 47 chrY 7857941 7858062 -43655522 - L1MDa LINE L1 -4918 1201 1089 1837 152 3 34 chrY 7858062 7858359 -43655225 - AluSx SINE Alu -24 288 1 705 259 109 47 chrY 7858359 7858816 -43654768 - L1MDa LINE L1 -5030 1089 587 829 235 0 24 chrY 7858977 7859147 -43654437 + FAM SINE Alu 1 166 -9 10608 21 0 1 chrY 7859194 7861261 -43652323 - L1HS LINE L1 0 6155 4090 7117 17 1 2 chrY 7861260 7862108 -43651476 + L1HS LINE L1 5291 6139 -16 * 244 0 56 0 chrY 7862108 7862144 -43651440 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 7117 17 1 2 chrY 7862144 7862161 -43651423 + L1HS LINE L1 6139 6155 0 317 155 0 17 chrY 7862258 7862316 -43651268 - FAM SINE Alu -83 92 36 2235 113 0 25 chrY 7862447 7862851 -43650733 + AluSx SINE Alu 3 398 0 335 250 19 37 chrY 7863585 7863693 -43649891 + HAL1b LINE L1 1243 1348 0 2215 133 0 0 chrY 7863706 7864014 -43649570 + AluSx SINE Alu 1 308 -4 229 351 30 61 chrY 7864617 7864748 -43648836 + MIR SINE MIR 21 147 -115 870 113 0 0 chrY 7864749 7864882 -43648702 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 2053 114 0 0 chrY 7864898 7865162 -43648422 + AluSx SINE Alu 33 296 -16 250 98 39 0 chrY 7865163 7865214 -43648370 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 337 246 235 11 chrY 7865427 7865614 -43647970 - HAL1 LINE L1 -154 2353 2125 453 230 29 83 chrY 7865615 7865810 -43647774 + MER20B DNA MER1_type 1 197 -22 407 206 9 19 chrY 7865827 7865934 -43647650 - HAL1 LINE L1 -378 2129 2024 * 2378 249 103 81 chrY 7865930 7866214 -43647370 - HAL1 LINE L1 -1044 1463 1187 2173 137 10 0 chrY 7866214 7866521 -43647063 - AluSx SINE Alu -2 310 1 2378 249 103 81 chrY 7866521 7867625 -43645959 - HAL1 LINE L1 -1320 1187 45 983 281 67 66 chrY 7867665 7868017 -43645567 + L2 LINE L2 2660 3006 -307 2329 122 0 0 chrY 7868017 7868328 -43645256 - AluY SINE Alu 0 311 1 983 281 67 66 chrY 7868328 7868589 -43644995 + L2 LINE L2 3006 3265 -48 675 232 310 12 chrY 7868592 7868632 -43644952 - MLT2B1 LTR ERVL 0 520 493 234 0 0 0 chrY 7868632 7868658 -43644926 + (TG)n Simple_repeat Simple_repeat 1 26 0 675 232 310 12 chrY 7868658 7868940 -43644644 - MLT2B1 LTR ERVL -27 493 102 555 222 0 0 chrY 7868940 7869066 -43644518 + L1PB4 LINE L1 6031 6156 0 27 0 0 0 chrY 7869066 7869093 -43644491 + AT_rich Low_complexity Low_complexity 1 27 0 2325 112 0 0 chrY 7869160 7869465 -43644119 + AluY SINE Alu 1 305 -6 277 243 0 0 chrY 7869486 7869556 -43644028 - MLT2B1 LTR ERVL -450 70 1 16166 186 17 20 chrY 7869618 7873838 -43639746 + L1PA13 LINE L1 1 4209 -2588 2212 142 0 0 chrY 7873838 7874148 -43639436 - AluSx SINE Alu -2 310 1 16166 186 17 20 chrY 7874148 7875425 -43638159 + L1PA13 LINE L1 4209 5489 -1308 2118 114 37 0 chrY 7875427 7875724 -43637860 + AluSp SINE Alu 3 310 -3 435 137 0 0 chrY 7875724 7875797 -43637787 + (GA)n Simple_repeat Simple_repeat 1 73 0 333 117 0 0 chrY 7875809 7875869 -43637715 + (CAGG)n Simple_repeat Simple_repeat 2 61 0 6000 110 19 1 chrY 7875871 7877184 -43636400 + L1PA13 LINE L1 5484 6813 -1 2314 110 3 0 chrY 7878853 7879161 -43634423 - AluSx SINE Alu -1 311 3 2162 77 42 3 chrY 7880470 7880755 -43632829 + AluY SINE Alu 16 311 0 2227 68 0 7 chrY 7880834 7881115 -43632469 + AluY SINE Alu 1 279 -32 260 119 75 0 chrY 7881115 7881182 -43632402 + GA-rich Low_complexity Low_complexity 3 74 0 1907 58 0 0 chrY 7881250 7881473 -43632111 + AluY SINE Alu 1 223 -88 34897 58 41 2 chrY 7881497 7885972 -43627612 - L1P LINE L1 -1496 4650 1 1329 232 10 7 chrY 7885992 7886281 -43627303 - AluJb SINE Alu -22 290 1 637 179 72 68 chrY 7886664 7886871 -43626713 + MER3 DNA MER1_type 1 208 -1 2231 175 37 30 chrY 7887023 7887451 -43626133 + Tigger2a DNA MER2_type 1 431 -3 194 376 47 0 chrY 7887616 7887701 -43625883 + L2 LINE L2 3167 3255 -17 1078 111 0 17 chrY 7887709 7887945 -43625639 + (GGAA)n Simple_repeat Simple_repeat 1 231 0 815 261 31 0 chrY 7887976 7888171 -43625413 + MLT2B1 LTR ERVL 1 201 -319 6037 109 55 2 chrY 7888176 7889063 -43624521 - L1P3 LINE L1 -4839 1622 689 12145 106 3 14 chrY 7889066 7891655 -43621929 + L1PA7 LINE L1 3565 6154 0 547 251 0 82 chrY 7891680 7891851 -43621733 + MLT2B1 LTR ERVL 228 384 -136 * 1081 241 78 4 chrY 7891840 7892116 -43621468 + MLT2B1 LTR ERVL 275 520 0 2116 185 3 8 chrY 7892665 7893054 -43620530 + MLT1B LTR MaLR 4 390 0 1389 153 5 1 chrY 7893063 7893292 -43620292 + MLT1B LTR MaLR 162 467 0 1097 215 18 9 chrY 7893293 7893521 -43620063 + MLT1B LTR MaLR 159 388 -2 189 303 176 14 chrY 7894821 7894963 -43618621 + L2 LINE L2 1047 1211 -2103 1079 257 12 4 chrY 7895017 7895258 -43618326 + Tigger7 DNA MER2_type 1 243 -490 257 220 0 0 chrY 7895262 7895312 -43618272 + Tigger7 DNA MER2_type 2259 2308 -183 247 317 58 0 chrY 7895932 7896052 -43617532 + LTR16C LTR ERVL 365 491 0 1320 174 0 5 chrY 7896166 7896390 -43617194 + AluSg/x SINE Alu 87 309 -3 2073 138 10 56 chrY 7896551 7896941 -43616643 - L1PA16 LINE L1 -9 6157 5786 366 239 9 46 chrY 7897505 7897614 -43615970 - MLT1D LTR MaLR -399 106 2 1456 217 75 53 chrY 7897794 7897826 -43615758 + MLT1D LTR MaLR 2 32 -473 1676 150 75 31 chrY 7897826 7898185 -43615399 - THE1C LTR MaLR 0 375 1 1456 217 75 53 chrY 7898185 7898645 -43614939 + MLT1D LTR MaLR 32 505 0 2735 143 19 15 chrY 7898958 7899421 -43614163 - MER4C LTR ERV1 0 465 1 2550 126 6 1 chrY 7900107 7900496 -43613088 + MLT1B LTR MaLR 1 467 0 1138 229 4 0 chrY 7900497 7900728 -43612856 + MLT1B LTR MaLR 159 390 0 2062 132 7 7 chrY 7901943 7902239 -43611345 - AluSg1 SINE Alu -13 296 1 1900 158 14 0 chrY 7902243 7902540 -43611044 - AluSx SINE Alu -11 301 1 183 139 0 0 chrY 7902848 7902884 -43610700 + (TG)n Simple_repeat Simple_repeat 1 36 0 1509 207 29 32 chrY 7902945 7903424 -43610160 + MLT1A1 LTR MaLR 1 365 0 1034 195 9 9 chrY 7903424 7903634 -43609950 + MLT1B LTR MaLR 158 367 -23 3943 141 134 23 chrY 7903636 7904969 -43608615 - pTR5 LTR ERV1 0 2606 1524 904 231 31 0 chrY 7904994 7905219 -43608365 + MLT1B LTR MaLR 159 390 0 1828 171 31 20 chrY 7906394 7906755 -43606829 - MLT1A1 LTR MaLR 0 626 1 340 219 20 60 chrY 7906769 7906920 -43606664 + (TATATG)n Simple_repeat Simple_repeat 2 146 0 24 67 0 0 chrY 7907866 7907911 -43605673 + AT_rich Low_complexity Low_complexity 1 45 0 1662 158 4 11 chrY 7909829 7910089 -43603495 + AluSq SINE Alu 18 275 -38 452 32 16 0 chrY 7910103 7910165 -43603419 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1845 214 77 0 chrY 7910478 7910879 -43602705 - MSTB1 LTR MaLR 0 432 1 246 335 59 30 chrY 7910905 7911108 -43602476 - L2 LINE L2 -993 2321 2113 3259 177 14 67 chrY 7911224 7911954 -43601630 + LTR8 LTR ERV1 1 691 0 324 203 0 14 chrY 7912032 7912106 -43601478 + LTR30 LTR ERV1 548 620 -102 4313 155 26 19 chrY 7912245 7912849 -43600735 - MER4E LTR ERV1 0 779 167 1696 132 0 84 chrY 7912849 7913145 -43600439 + AluSx SINE Alu 29 299 -13 4313 155 26 19 chrY 7913145 7913313 -43600271 - MER4E LTR ERV1 -612 167 2 1894 117 83 6 chrY 7913365 7913727 -43599857 - LTR7 LTR ERV1 0 450 1 35661 151 38 32 chrY 7913727 7921079 -43592505 - HERVH LTR ERV1 0 7713 1 2129 133 65 57 chrY 7921079 7921552 -43592032 - LTR7 LTR ERV1 0 450 1 2406 131 30 0 chrY 7922487 7922854 -43590730 - MER41A LTR ERV1 -176 378 1 1957 188 43 35 chrY 7922857 7923409 -43590175 + LTR10E LTR ERV1 1 618 -15 1138 29 0 0 chrY 7923441 7923577 -43590007 - L1PA4 LINE L1 -935 5211 5076 7775 41 5 0 chrY 7923577 7924516 -43589068 + L1PA4 LINE L1 5213 6155 0 1242 182 8 8 chrY 7924849 7925091 -43588493 - MLT1B LTR MaLR 0 390 149 1147 193 5 9 chrY 7925098 7925316 -43588268 - MLT1B LTR MaLR -16 374 158 2194 150 27 7 chrY 7925316 7925695 -43587889 - MLT1B LTR MaLR 0 467 5 208 286 200 23 chrY 7925706 7925881 -43587703 + MIR SINE MIR 57 262 0 3856 157 2 8 chrY 7925918 7926537 -43587047 + L1PB4 LINE L1 5538 6152 -4 433 102 0 0 chrY 7926777 7926836 -43586748 + MSTA LTR MaLR 1 59 -369 399 274 11 0 chrY 7926939 7927034 -43586550 + MER5A DNA MER1_type 14 109 -80 242 302 23 0 chrY 7928625 7928711 -43584873 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 378 182 51 14 chrY 7928711 7929013 -43584571 + (TAGA)n Simple_repeat Simple_repeat 1 313 0 252 244 13 26 chrY 7929026 7929128 -43584456 + (CATA)n Simple_repeat Simple_repeat 1 100 0 461 245 65 38 chrY 7929206 7929390 -43584194 + MER53 DNA DNA 1 189 0 1731 159 4 11 chrY 7929448 7929719 -43583865 + AluSx SINE Alu 11 279 -33 1095 93 6 22 chrY 7929734 7930281 -43583303 + (GAAA)n Simple_repeat Simple_repeat 1 537 0 286 125 62 0 chrY 7930849 7930929 -43582655 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 712 124 47 0 chrY 7931117 7931286 -43582298 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 254 170 50 28 chrY 7931297 7931438 -43582146 + (TCTA)n Simple_repeat Simple_repeat 2 145 0 535 145 50 20 chrY 7931468 7931769 -43581815 + (TCTA)n Simple_repeat Simple_repeat 1 310 0 208 147 67 0 chrY 7931804 7931879 -43581705 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 235 329 0 0 chrY 7931883 7931968 -43581616 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 389 208 21 0 chrY 7932179 7932275 -43581309 + (CATA)n Simple_repeat Simple_repeat 1 98 0 3976 201 31 12 chrY 7932539 7933307 -43580277 - LTR39 LTR ERV1 0 783 1 1656 226 11 25 chrY 7933584 7933952 -43579632 + MLT2D LTR ERVL 7 369 -45 630 194 0 17 chrY 7933988 7934168 -43579416 + (TA)n Simple_repeat Simple_repeat 2 178 0 322 192 50 71 chrY 7934173 7934272 -43579312 - L1MC4 LINE L1 -1337 6705 6609 229 286 0 0 chrY 7934272 7934342 -43579242 + (TA)n Simple_repeat Simple_repeat 1 70 -1101 1970 136 26 163 chrY 7934342 7934421 -43579163 - Tigger2a DNA MER2_type -2274 434 346 1761 156 17 0 chrY 7934421 7934709 -43578875 + AluSx SINE Alu 5 297 -15 1970 136 26 163 chrY 7934709 7934836 -43578748 - Tigger2a DNA MER2_type -2362 346 203 1832 164 10 0 chrY 7934836 7935129 -43578455 - AluSx SINE Alu -16 296 1 1970 136 26 163 chrY 7935129 7935423 -43578161 - Tigger2a DNA MER2_type -2505 203 2 229 286 0 0 chrY 7935423 7935443 -43578141 + (TA)n Simple_repeat Simple_repeat 69 1171 0 1606 199 0 3 chrY 7935838 7936289 -43577295 - AluJo SINE Alu 0 450 1 358 83 0 0 chrY 7936780 7936828 -43576756 + Alu SINE Alu 247 294 -6 849 192 10 5 chrY 7936828 7937021 -43576563 - L1P5 LINE L1 -686 5470 5277 849 171 0 0 chrY 7938018 7938188 -43575396 + (CA)n Simple_repeat Simple_repeat 1 170 0 1935 156 0 7 chrY 7938262 7938557 -43575027 - AluSx SINE Alu -19 293 1 1485 245 32 64 chrY 7938681 7938973 -43574611 + MLT1D LTR MaLR 24 295 -210 3540 111 82 48 chrY 7938973 7939559 -43574025 - MER4B LTR ERV1 -4 606 1 1485 245 32 64 chrY 7939559 7939764 -43573820 + MLT1D LTR MaLR 295 505 0 196 294 223 38 chrY 7940157 7940341 -43573243 + L2 LINE L2 2879 3096 -217 339 96 0 0 chrY 7940458 7940510 -43573074 + (TTAGGG)n Simple_repeat Simple_repeat 2 53 0 188 274 0 39 chrY 7940718 7940769 -43572815 - MER5B DNA MER1_type -1 177 129 245 363 24 8 chrY 7941810 7941934 -43571650 + MER5B DNA MER1_type 27 152 -26 2415 122 48 20 chrY 7942005 7942359 -43571225 + THE1B LTR MaLR 1 364 0 1063 291 104 3 chrY 7942913 7943250 -43570334 - MLT1D LTR MaLR 0 505 135 658 235 20 7 chrY 7943515 7943668 -43569916 - MLT1A1 LTR MaLR 0 365 211 1753 200 19 6 chrY 7943739 7944099 -43569485 - MLT1A1 LTR MaLR 0 365 1 1568 140 75 11 chrY 7945121 7945412 -43568172 - AluJb SINE Alu 0 308 1 804 240 91 33 chrY 7945852 7946148 -43567436 + MLT1C LTR MaLR 27 348 -119 340 195 37 12 chrY 7946173 7946255 -43567329 + MLT1D LTR MaLR 278 361 -144 703 251 51 51 chrY 7946272 7946571 -43567013 + MLT1C LTR MaLR 8 309 -158 1361 136 0 9 chrY 7946571 7946784 -43566800 + L1MA2 LINE L1 6091 6301 -3 703 251 51 51 chrY 7946784 7946799 -43566785 + MLT1C LTR MaLR 308 322 -145 269 229 0 0 chrY 7946806 7946867 -43566717 + MLT1D LTR MaLR 541 601 -25 1792 160 17 0 chrY 7946893 7947180 -43566404 + AluSx SINE Alu 1 292 -20 642 220 58 119 chrY 7949136 7949514 -43564070 + MLT1D LTR MaLR 7 361 -144 308 161 0 48 chrY 7949567 7949629 -43563955 + FLAM_A SINE Alu 75 133 0 1071 220 70 39 chrY 7949639 7949925 -43563659 + AluJo SINE Alu 2 296 -6 487 311 22 28 chrY 7949954 7950134 -43563450 + MLT1D LTR MaLR 316 494 -132 368 164 15 0 chrY 7950312 7950379 -43563205 - L1PA16 LINE L1 -13 6153 6086 633 178 7 105 chrY 7950379 7950531 -43563053 + MLT1C LTR MaLR 367 503 -2 334 261 9 9 chrY 7950990 7951101 -43562483 + LTR16C LTR ERVL 371 481 -10 35 41 0 0 chrY 7951512 7951561 -43562023 + AT_rich Low_complexity Low_complexity 1 49 0 215 98 66 0 chrY 7951625 7951686 -43561898 + (TA)n Simple_repeat Simple_repeat 2 66 0 227 220 52 46 chrY 7951704 7951772 -43561812 + (TATAA)n Simple_repeat Simple_repeat 1 67 -107 1956 130 14 3 chrY 7951772 7952057 -43561527 - AluSg SINE Alu -15 295 8 227 220 52 46 chrY 7952057 7952161 -43561423 + (TATAA)n Simple_repeat Simple_repeat 67 174 0 1927 177 3 0 chrY 7952400 7952711 -43560873 + AluJb SINE Alu 1 312 0 2321 123 23 6 chrY 7952943 7953292 -43560292 + THE1A LTR MaLR 1 355 0 3929 156 35 7 chrY 7953727 7954164 -43559420 - L1PB4 LINE L1 -17 6139 5675 1729 185 0 7 chrY 7954164 7954461 -43559123 - AluSg SINE Alu -15 295 1 3929 156 35 7 chrY 7954461 7954707 -43558877 - L1PB4 LINE L1 -481 5675 5437 1966 157 7 0 chrY 7954828 7955127 -43558457 + AluSx SINE Alu 1 301 -11 4542 140 31 70 chrY 7955255 7956070 -43557514 + LTR1 LTR ERV1 3 785 0 456 250 19 9 chrY 7956130 7956231 -43557353 + MLT1D LTR MaLR 1 102 -403 376 96 0 170 chrY 7956231 7956325 -43557259 + MADE1 DNA Mariner 1 78 -2 1074 188 309 3 chrY 7956325 7956629 -43556955 + MLT1D LTR MaLR 98 494 -11 1968 157 10 0 chrY 7956835 7957141 -43556443 - AluSx SINE Alu -3 309 1 244 178 27 27 chrY 7957774 7957847 -43555737 + A-rich Low_complexity Low_complexity 5 77 0 248 133 40 13 chrY 7957878 7957953 -43555631 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 3515 143 8 21 chrY 7957954 7958484 -43555100 - MER1A DNA MER1_type 0 527 5 191 152 22 0 chrY 7958566 7958612 -43554972 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2031 124 17 3 chrY 7958874 7959165 -43554419 + AluSx SINE Alu 1 295 -17 1021 189 64 161 chrY 7959187 7959467 -43554117 + L1MB5 LINE L1 5749 6055 -119 22503 42 0 1 chrY 7959467 7960355 -43553229 + L1PA4 LINE L1 2734 3621 -2534 2915 6 0 0 chrY 7960355 7960666 -43552918 + AluYa5 SINE Alu 1 311 0 22503 42 0 1 chrY 7960666 7963225 -43550359 + L1PA4 LINE L1 3621 6153 -2 1021 189 64 161 chrY 7963225 7963333 -43550251 + L1MB5 LINE L1 6055 6086 -88 3165 156 39 25 chrY 7963333 7963853 -43549731 + MER1A DNA MER1_type 1 527 0 1021 189 64 161 chrY 7963853 7963934 -43549650 + L1MB5 LINE L1 6086 6173 -1 1957 141 9 41 chrY 7964010 7964330 -43549254 + AluSg SINE Alu 1 310 0 2258 99 0 6 chrY 7965523 7965836 -43547748 - AluY SINE Alu 0 311 1 496 160 66 1 chrY 7966055 7966167 -43547417 + L1MB3 LINE L1 5660 5783 -400 288 0 0 0 chrY 7966182 7966214 -43547370 + (A)n Simple_repeat Simple_repeat 1 32 0 1594 161 62 44 chrY 7966214 7966362 -43547222 + L1MB3 LINE L1 5762 5906 -277 1873 184 0 0 chrY 7966362 7966661 -43546923 + AluJo SINE Alu 5 303 -9 1594 161 62 44 chrY 7966661 7966897 -43546687 + L1MB3 LINE L1 5906 6153 -30 31 0 0 0 chrY 7966911 7966942 -43546642 + AT_rich Low_complexity Low_complexity 1 31 0 263 161 18 0 chrY 7966946 7967002 -43546582 + (CA)n Simple_repeat Simple_repeat 2 58 0 1681 170 0 14 chrY 7967035 7967317 -43546267 + AluJb SINE Alu 5 282 -30 723 54 0 0 chrY 7967317 7967409 -43546175 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 184 98 196 39 chrY 7968060 7968111 -43545473 + L2 LINE L2 1965 2023 -1291 24 0 0 0 chrY 7968411 7968435 -43545149 + AT_rich Low_complexity Low_complexity 1 24 0 2038 131 3 20 chrY 7968412 7968717 -43544867 - AluSx SINE Alu -9 303 4 457 236 115 7 chrY 7968760 7968908 -43544676 - MIR SINE MIR -7 255 92 1484 226 68 53 chrY 7969453 7969927 -43543657 - MLT1D LTR MaLR 0 505 25 1113 221 83 28 chrY 7969936 7970261 -43543323 + MLT1C LTR MaLR 110 452 -15 3092 143 41 19 chrY 7970940 7971456 -43542128 + MER1A DNA MER1_type 1 527 0 1019 197 32 9 chrY 7971707 7971925 -43541659 - L1MC1 LINE L1 0 6333 6111 1947 149 0 0 chrY 7972025 7972307 -43541277 + AluSx SINE Alu 1 282 -30 2192 96 13 19 chrY 7972503 7972816 -43540768 - AluY SINE Alu 0 311 1 187 320 52 31 chrY 7974753 7974850 -43538734 - L2 LINE L2 -5 3267 3169 547 282 41 0 chrY 7975069 7975239 -43538345 - L1MB5 LINE L1 -8 6166 5990 1445 199 62 10 chrY 7975526 7975684 -43537900 - AluJb SINE Alu -5 307 159 264 30 0 0 chrY 7975684 7975717 -43537867 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1445 199 62 10 chrY 7975717 7975850 -43537734 - AluJb SINE Alu -153 159 1 197 191 0 95 chrY 7975899 7975962 -43537622 - L2 LINE L2 0 3272 3216 226 121 0 0 chrY 7976971 7977004 -43536580 + Alu SINE Alu 137 169 -134 1643 156 71 45 chrY 7977004 7977356 -43536228 - LTR7 LTR ERV1 0 450 90 646 113 47 0 chrY 7977357 7977463 -43536121 - AluSp/q SINE Alu -1 312 202 604 141 0 0 chrY 7977464 7977556 -43536028 - LTR7 LTR ERV1 -358 92 1 1268 181 7 65 chrY 7977556 7977868 -43535716 + AluSq SINE Alu 30 313 0 342 0 0 0 chrY 7979771 7979809 -43533775 + (A)n Simple_repeat Simple_repeat 1 38 0 2089 108 3 0 chrY 7980606 7980892 -43532692 - AluSp SINE Alu -26 287 1 955 105 0 8 chrY 7981420 7981553 -43532031 - AluSp SINE Alu -181 132 1 180 0 0 0 chrY 7983530 7983550 -43530034 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2516 135 8 3 chrY 7983552 7983944 -43529640 - L1PA8A LINE L1 -18 6113 5720 522 0 0 0 chrY 7984207 7984265 -43529319 + (TA)n Simple_repeat Simple_repeat 2 59 0 364 186 47 17 chrY 7985860 7986032 -43527552 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 551 110 27 27 chrY 7986156 7986302 -43527282 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 370 250 12 0 chrY 7986307 7986387 -43527197 + MER20 DNA MER1_type 4 84 -135 278 353 119 15 chrY 7986607 7987129 -43526455 + L2 LINE L2 2294 2869 -445 762 161 0 8 chrY 7987169 7987293 -43526291 - AluSc SINE Alu -21 288 166 496 116 0 0 chrY 7987289 7987358 -43526226 - AluS SINE Alu -234 79 11 * 905 234 23 15 chrY 7987493 7987729 -43525855 - MER20 DNA MER1_type -17 202 1 296 133 17 0 chrY 7987731 7987791 -43525793 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 488 149 57 40 chrY 7987800 7987975 -43525609 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 741 125 56 17 chrY 7987999 7988472 -43525112 + (TAGA)n Simple_repeat Simple_repeat 1 491 0 373 145 52 29 chrY 7988483 7988655 -43524929 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 336 289 10 0 chrY 7988696 7988793 -43524791 - MER20 DNA MER1_type -1 218 121 181 304 29 39 chrY 7989150 7989252 -43524332 + L2 LINE L2 2950 3050 -263 1210 218 23 4 chrY 7989649 7989915 -43523669 - L1MB5 LINE L1 0 6174 5904 3014 127 5 5 chrY 7989947 7990373 -43523211 - MER1A DNA MER1_type 0 529 104 212 365 32 25 chrY 7990373 7990650 -43522934 - L2 LINE L2 -1034 2280 2002 368 267 23 0 chrY 7990701 7990877 -43522707 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chrY 7990884 7990916 -43522668 + AT_rich Low_complexity Low_complexity 1 32 0 441 221 29 20 chrY 7990918 7991323 -43522261 + (TA)n Simple_repeat Simple_repeat 1 408 0 651 169 33 12 chrY 7991343 7991682 -43521902 + (TA)n Simple_repeat Simple_repeat 1 346 0 278 209 35 9 chrY 7991707 7991822 -43521762 + (TA)n Simple_repeat Simple_repeat 2 119 0 460 141 35 12 chrY 7991906 7992076 -43521508 + (TA)n Simple_repeat Simple_repeat 1 174 0 503 130 51 10 chrY 7992090 7992510 -43521074 + (TA)n Simple_repeat Simple_repeat 1 437 0 23 54 0 0 chrY 7992704 7992741 -43520843 + AT_rich Low_complexity Low_complexity 1 37 0 1418 118 13 22 chrY 7998074 7998303 -43515281 - L1PA16 LINE L1 0 6166 5940 1872 195 37 0 chrY 7998748 7999122 -43514462 - MLT1B LTR MaLR 0 390 3 753 206 275 5 chrY 8000810 8001028 -43512556 - MER101B LTR ERV1 -51 519 243 376 234 0 47 chrY 8001041 8001148 -43512436 - MER101B LTR ERV1 -442 128 27 2440 207 40 8 chrY 8001187 8001690 -43511894 - MER74A LTR ERVL -32 526 8 207 109 18 36 chrY 8001897 8001952 -43511632 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 * 1393 189 4 31 chrY 8001950 8002230 -43511354 - AluJo SINE Alu 0 301 29 3954 162 44 21 chrY 8002560 8003312 -43510272 - L1MA8 LINE L1 -119 6172 5404 1026 188 64 108 chrY 8003324 8003638 -43509946 + AluJo SINE Alu 3 302 0 1898 134 11 0 chrY 8004860 8005143 -43508441 + AluSx SINE Alu 1 286 -26 1362 169 90 23 chrY 8005166 8005300 -43508284 - AluJo SINE Alu -28 284 160 1140 66 9 23 chrY 8005300 8005649 -43507935 + (TTC)n Simple_repeat Simple_repeat 1 344 0 1362 169 90 23 chrY 8005649 8005779 -43507805 - AluJo SINE Alu -152 160 1 201 167 0 0 chrY 8005889 8005925 -43507659 + A-rich Low_complexity Low_complexity 1 36 0 853 234 28 23 chrY 8006197 8006415 -43507169 + MER20 DNA MER1_type 1 219 0 978 66 24 12 chrY 8006431 8006598 -43506986 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 817 227 0 44 chrY 8006600 8006829 -43506755 + MER20 DNA MER1_type 1 219 0 212 239 22 54 chrY 8006845 8006937 -43506647 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 555 132 0 0 chrY 8006952 8007043 -43506541 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 971 203 37 32 chrY 8007045 8007262 -43506322 + MER20 DNA MER1_type 1 218 -1 465 184 0 53 chrY 8007283 8007473 -43506111 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1005 209 38 5 chrY 8007510 8007721 -43505863 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chrY 8008371 8008393 -43505191 + AT_rich Low_complexity Low_complexity 1 22 0 2022 151 3 0 chrY 8008394 8008693 -43504891 + AluSx SINE Alu 1 300 -12 1190 216 50 32 chrY 8009096 8009203 -43504381 + AluJo SINE Alu 9 113 -199 343 62 16 31 chrY 8009203 8009267 -43504317 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 1190 216 50 32 chrY 8009267 8009442 -43504142 + AluJo SINE Alu 113 296 -16 278 75 60 0 chrY 8012788 8012855 -43500729 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chrY 8012923 8012955 -43500629 + AT_rich Low_complexity Low_complexity 1 32 0 37082 48 50 2 chrY 8013490 8019344 -43494240 - L1PA2 LINE L1 0 6155 13 729 185 76 38 chrY 8020022 8020233 -43493351 - MER20 DNA MER1_type 0 219 1 212 138 92 20 chrY 8020280 8020432 -43493152 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 413 188 47 0 chrY 8020444 8020593 -43492991 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 330 191 40 12 chrY 8020666 8020839 -43492745 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 372 22 0 0 chrY 8020847 8020892 -43492692 + (CATA)n Simple_repeat Simple_repeat 2 46 0 792 221 33 9 chrY 8020947 8021160 -43492424 - MER20 DNA MER1_type -1 218 1 546 146 0 0 chrY 8021644 8021726 -43491858 + FRAM/FAM SINE Alu 9 90 -86 470 247 57 31 chrY 8021746 8021940 -43491644 + MLT1D LTR MaLR 48 246 -259 939 226 80 32 chrY 8022027 8022403 -43491181 + MLT1C LTR MaLR 1 394 -73 18140 68 7 1 chrY 8022460 8028470 -43485114 - L1PA4 LINE L1 0 6155 1 236 212 15 30 chrY 8028470 8028536 -43485048 + MLT1C LTR MaLR 403 467 0 1618 186 7 0 chrY 8029038 8029312 -43484272 + AluJo SINE Alu 20 295 -17 926 249 80 42 chrY 8029583 8030033 -43483551 - MLT1C LTR MaLR 0 467 1 249 164 27 12 chrY 8030045 8030175 -43483409 - MLT1D LTR MaLR -146 359 200 724 174 0 15 chrY 8030192 8030324 -43483260 - AluSp/q SINE Alu -9 304 175 306 237 167 26 chrY 8030332 8030488 -43483096 - MLT1D LTR MaLR -327 178 1 403 298 87 19 chrY 8030740 8030901 -43482683 + MIR SINE MIR 88 259 -3 21 0 0 0 chrY 8032253 8032274 -43481310 + AT_rich Low_complexity Low_complexity 1 21 0 33244 78 3 95 chrY 8032274 8037187 -43476397 - L1PA5 LINE L1 -9 6145 785 7325 40 2 1 chrY 8037187 8038487 -43475097 + L1PA3 LINE L1 4855 6155 0 33244 78 3 95 chrY 8038487 8039108 -43474476 - L1PA5 LINE L1 -5369 785 1355 2348 60 3 0 chrY 8039108 8039406 -43474178 - L1PA3 LINE L1 -1 6154 5856 33244 78 3 95 chrY 8039406 8040640 -43472944 - L1PA5 LINE L1 -4798 1356 11 384 169 0 0 chrY 8042817 8042894 -43470690 + (CAT)n Simple_repeat Simple_repeat 3 79 0 24 0 0 0 chrY 8043355 8043379 -43470205 + AT_rich Low_complexity Low_complexity 1 24 0 484 290 20 27 chrY 8043983 8044156 -43469428 - MIR SINE MIR -55 153 32 425 238 26 104 chrY 8044403 8044596 -43468988 - MER5B DNA MER1_type 0 178 1 24 53 0 0 chrY 8045001 8045039 -43468545 + AT_rich Low_complexity Low_complexity 1 38 0 231 229 16 0 chrY 8045795 8045856 -43467728 + MLT1J2 LTR MaLR 64 125 -325 1948 128 13 36 chrY 8046343 8046648 -43466936 - AluSg SINE Alu -12 298 1 24 53 0 0 chrY 8047000 8047038 -43466546 + AT_rich Low_complexity Low_complexity 1 38 0 543 184 22 0 chrY 8047731 8047867 -43465717 + GA-rich Low_complexity Low_complexity 1 139 0 2128 128 7 3 chrY 8047999 8048303 -43465281 - AluSx SINE Alu -5 307 3 398 253 0 63 chrY 8048821 8048979 -43464605 - L1ME LINE L1 -474 5647 5500 275 211 0 13 chrY 8049043 8049119 -43464465 + CT-rich Low_complexity Low_complexity 2 76 0 283 265 15 0 chrY 8049167 8049235 -43464349 - MER5B DNA MER1_type -109 69 1 253 217 24 0 chrY 8049482 8049565 -43464019 + CT-rich Low_complexity Low_complexity 2 86 0 1262 145 60 0 chrY 8049655 8049903 -43463681 - L1MA5A LINE L1 -6 6291 6029 2066 89 0 0 chrY 8050097 8050377 -43463207 + L1PA5 LINE L1 5875 6154 0 21 36 0 0 chrY 8050478 8050506 -43463078 + AT_rich Low_complexity Low_complexity 1 28 0 1247 233 39 21 chrY 8050514 8050797 -43462787 + AluJo SINE Alu 1 288 -24 246 107 54 0 chrY 8050797 8050853 -43462731 + (TA)n Simple_repeat Simple_repeat 1 59 0 1033 146 50 5 chrY 8050948 8051254 -43462330 - THE1C LTR MaLR 0 375 7 2557 21 0 0 chrY 8051903 8052221 -43461363 + AluY SINE Alu 1 318 0 225 213 0 0 chrY 8052472 8052519 -43461065 - MER63 DNA MER1_type -333 728 682 1300 114 0 0 chrY 8053210 8053411 -43460173 - L1PA14 LINE L1 -358 5803 5603 2371 86 3 65 chrY 8053411 8053794 -43459790 + L1PA14 LINE L1 5800 6159 -2 1503 229 7 0 chrY 8054602 8054912 -43458672 - AluJo SINE Alu 0 312 1 624 114 13 82 chrY 8056911 8056937 -43456647 + L1PA15 LINE L1 5306 5332 -834 1814 173 7 3 chrY 8056937 8057237 -43456347 + AluSx SINE Alu 1 301 -11 624 114 13 82 chrY 8057237 8057368 -43456216 + L1PA15 LINE L1 5332 5452 -714 * 18104 69 3 1 chrY 8057365 8059903 -43453681 - L1PA4 LINE L1 -1873 4273 1730 8127 55 4 3 chrY 8059896 8061743 -43451841 + L1PA4 LINE L1 4292 6142 -13 * 3745 163 24 9 chrY 8061789 8062487 -43451097 + L1PA15 LINE L1 5442 6150 -15 195 100 0 0 chrY 8062497 8062527 -43451057 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrY 8062764 8062786 -43450798 + AT_rich Low_complexity Low_complexity 1 22 0 316 151 0 0 chrY 8062854 8062907 -43450677 - L1MC/D LINE L1 -490 5843 5791 533 222 17 0 chrY 8062915 8063032 -43450552 + L1MC1 LINE L1 6215 6333 0 21 71 0 0 chrY 8063048 8063090 -43450494 + AT_rich Low_complexity Low_complexity 1 42 0 348 24 0 0 chrY 8063650 8063691 -43449893 + (TG)n Simple_repeat Simple_repeat 2 42 0 1869 123 58 0 chrY 8063701 8063978 -43449606 - AluSq SINE Alu -20 293 1 38659 71 2 1 chrY 8064270 8070396 -43443188 + L1PA3 LINE L1 13 6149 -6 11277 56 3 0 chrY 8070412 8072599 -43440985 + L1PA4 LINE L1 3950 6139 -16 649 192 13 32 chrY 8072979 8073135 -43440449 - LTR22B LTR ERVK 0 492 340 * 1070 135 49 0 chrY 8073120 8073305 -43440279 - LTR22B LTR ERVK -294 198 5 3239 174 31 3 chrY 8073642 8074229 -43439355 + LTR26 LTR ERV1 1 603 0 835 216 44 0 chrY 8074375 8074556 -43439028 + MER5A DNA MER1_type 1 189 0 1292 205 3 68 chrY 8074857 8075179 -43438405 + AluJo SINE Alu 1 301 -11 1147 213 4 4 chrY 8075300 8075525 -43438059 + LTR26 LTR ERV1 379 603 0 445 256 99 50 chrY 8075866 8076230 -43437354 - MER20B DNA MER1_type -110 673 292 702 187 27 7 chrY 8076230 8076380 -43437204 + L1MA4 LINE L1 5846 5998 -302 21 0 0 0 chrY 8076694 8076715 -43436869 + AT_rich Low_complexity Low_complexity 1 21 0 786 209 31 7 chrY 8076845 8077119 -43436465 - L1MA7 LINE L1 -1 6290 5893 1027 234 31 73 chrY 8077299 8077604 -43435980 - MLT1A1 LTR MaLR 0 365 78 1589 180 18 85 chrY 8077604 8077993 -43435591 - MLT1A1 LTR MaLR 0 365 3 1027 234 31 73 chrY 8077993 8078068 -43435516 - MLT1A1 LTR MaLR -287 78 1 2048 117 0 78 chrY 8078705 8078920 -43434664 + L1PB4 LINE L1 5607 5776 -380 2022 141 42 36 chrY 8078920 8079281 -43434303 - THE1B LTR MaLR 0 364 2 2048 117 0 78 chrY 8079281 8079475 -43434109 + L1PB4 LINE L1 5776 5984 -172 2607 127 24 12 chrY 8079591 8080016 -43433568 + L1PB2 LINE L1 5720 6149 -2 478 139 0 0 chrY 8080109 8080195 -43433389 - L1PB1 LINE L1 -3 6148 6063 2221 107 8 46 chrY 8080195 8080328 -43433256 + L1PB1 LINE L1 5696 5833 -318 2016 143 3 0 chrY 8080328 8080629 -43432955 + AluSc SINE Alu 1 302 -7 2221 107 8 46 chrY 8080629 8080886 -43432698 + L1PB1 LINE L1 5833 6071 -80 509 229 28 16 chrY 8080912 8081069 -43432515 + L1MB3 LINE L1 6019 6184 0 228 316 168 19 chrY 8081543 8081698 -43431886 - MIR SINE MIR -56 206 29 28615 120 30 19 chrY 8081936 8086831 -43426753 + L1PA6 LINE L1 11 4959 -1187 6492 81 10 0 chrY 8086831 8087795 -43425789 + L1PA6 LINE L1 5174 6146 -8 1436 214 42 6 chrY 8087957 8088293 -43425291 - MLT1A1 LTR MaLR -15 350 3 1760 178 20 3 chrY 8088317 8088620 -43424964 + AluSx SINE Alu 1 308 -4 2051 139 0 3 chrY 8088620 8088913 -43424671 + AluSc SINE Alu 1 293 -16 2401 253 18 8 chrY 8089561 8090167 -43423417 - MER82 DNA MER2_type 0 653 42 1521 122 5 0 chrY 8090167 8090389 -43423195 - AluSc SINE Alu -7 302 80 805 230 129 94 chrY 8090870 8090923 -43422661 - MLT1D LTR MaLR 0 505 455 2402 140 37 0 chrY 8090923 8090977 -43422607 + L1PB1 LINE L1 5731 5782 -369 318 50 0 0 chrY 8090977 8091017 -43422567 + (CA)n Simple_repeat Simple_repeat 2 41 0 2402 140 37 0 chrY 8091017 8091368 -43422216 + L1PB1 LINE L1 5782 6151 0 805 230 129 94 chrY 8091368 8091749 -43421835 - MLT1D LTR MaLR -50 455 56 1281 204 43 43 chrY 8091749 8092101 -43421483 - MLT1A2 LTR MaLR 0 374 23 1928 158 31 19 chrY 8092106 8092466 -43421118 - THE1B LTR MaLR 0 364 1 198 367 31 41 chrY 8093220 8093318 -43420266 - L2 LINE L2 0 3313 3217 1134 240 62 35 chrY 8094159 8094593 -43418991 + MLT1C LTR MaLR 22 467 0 6373 88 6 0 chrY 8095291 8096362 -43417222 - L1PA7 LINE L1 -16 6138 5063 1589 185 104 32 chrY 8096949 8097465 -43416119 + MLT2A2 LTR ERVL 1 554 0 250 317 161 19 chrY 8097822 8098027 -43415557 - L2 LINE L2 0 3313 3080 1834 132 68 11 chrY 8098375 8098656 -43414928 - AluSx SINE Alu -13 299 3 618 229 6 34 chrY 8098794 8098871 -43414713 - L1MB7 LINE L1 -300 5884 5806 2201 126 73 59 chrY 8098871 8099106 -43414478 + MSTA LTR MaLR 1 246 -182 2211 94 3 0 chrY 8099106 8099403 -43414181 + AluY SINE Alu 1 298 -13 2201 126 73 59 chrY 8099403 8099589 -43413995 + MSTA LTR MaLR 246 428 0 618 229 6 34 chrY 8099589 8099690 -43413894 - L1MB7 LINE L1 -378 5806 5711 401 185 120 0 chrY 8099701 8099809 -43413775 + L1MB4 LINE L1 6035 6155 -25 2189 93 19 26 chrY 8099867 8100179 -43413405 + AluY SINE Alu 1 310 -1 1743 187 3 10 chrY 8100219 8100524 -43413060 + AluSx SINE Alu 1 303 -9 290 260 7 0 chrY 8100653 8100807 -43412777 + CT-rich Low_complexity Low_complexity 2 156 0 444 243 0 0 chrY 8100859 8101007 -43412577 + CT-rich Low_complexity Low_complexity 2 149 0 21 36 0 0 chrY 8101298 8101326 -43412258 + AT_rich Low_complexity Low_complexity 1 28 0 266 264 12 12 chrY 8102205 8102368 -43411216 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 502 268 12 27 chrY 8102369 8102715 -43410869 + (TA)n Simple_repeat Simple_repeat 1 340 0 330 220 0 80 chrY 8102731 8102831 -43410753 + L1MC4 LINE L1 6612 6703 -1339 310 216 18 36 chrY 8102875 8103042 -43410542 + (CATATA)n Simple_repeat Simple_repeat 5 168 0 333 282 17 17 chrY 8103043 8103160 -43410424 + (CA)n Simple_repeat Simple_repeat 2 118 0 544 259 93 5 chrY 8104710 8104903 -43408681 - MER20 DNA MER1_type -9 210 1 540 0 0 0 chrY 8104914 8104974 -43408610 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 1865 166 33 28 chrY 8104974 8105335 -43408249 + THE1B LTR MaLR 2 364 0 293 191 33 26 chrY 8105336 8105488 -43408096 + (TAGA)n Simple_repeat Simple_repeat 4 156 0 742 196 50 17 chrY 8105536 8105715 -43407869 - MER20 DNA MER1_type -17 202 18 1877 179 0 6 chrY 8105899 8106212 -43407372 + AluSx SINE Alu 1 311 -1 365 188 12 0 chrY 8107145 8107230 -43406354 + (CATA)n Simple_repeat Simple_repeat 4 89 0 303 276 46 0 chrY 8107173 8107260 -43406324 - L1MC4 LINE L1 -1338 6704 6614 * 2260 94 0 16 chrY 8107316 8107625 -43405959 + AluY SINE Alu 1 304 -7 7628 92 41 23 chrY 8107680 8109526 -43404058 + L1PA6 LINE L1 4299 6153 -1 1078 182 84 16 chrY 8111141 8111423 -43402161 + LTR47A LTR ERVL 2 364 -88 192 40 0 0 chrY 8111423 8111448 -43402136 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1078 182 84 16 chrY 8111448 8111541 -43402043 + LTR47A LTR ERVL 364 449 -3 298 269 14 14 chrY 8112572 8112868 -43400716 + CT-rich Low_complexity Low_complexity 1 296 0 268 241 30 8 chrY 8112883 8113016 -43400568 + CT-rich Low_complexity Low_complexity 2 137 0 464 250 14 7 chrY 8113059 8113342 -43400242 + CT-rich Low_complexity Low_complexity 1 284 0 1634 214 91 8 chrY 8113945 8114328 -43399256 - MLT1D LTR MaLR -90 415 1 291 188 42 0 chrY 8114329 8114377 -43399207 - MLT1D LTR MaLR -455 50 1 289 188 42 0 chrY 8114378 8114426 -43399158 - MLT1D LTR MaLR -455 50 1 299 133 44 0 chrY 8114430 8114475 -43399109 - MLT1D LTR MaLR -458 47 1 254 188 42 0 chrY 8114476 8114524 -43399060 - MLT1D LTR MaLR -455 50 1 225 154 39 77 chrY 8114571 8114623 -43398961 - MLT1D LTR MaLR -455 50 1 303 196 0 0 chrY 8114623 8114674 -43398910 - MLT1D LTR MaLR -454 51 1 3089 190 38 3 chrY 8114971 8115555 -43398029 - L1PB4 LINE L1 -17 6139 5536 1360 240 59 84 chrY 8116060 8116368 -43397216 + MER77 LTR ERV1 41 355 -325 2199 170 78 5 chrY 8116368 8116767 -43396817 + MSTA LTR MaLR 1 428 0 1360 240 59 84 chrY 8116767 8117056 -43396528 + MER77 LTR ERV1 355 673 -7 1726 172 0 38 chrY 8117191 8117505 -43396079 + AluJo SINE Alu 11 312 0 667 181 17 14 chrY 8117505 8117859 -43395725 + GA-rich Low_complexity Low_complexity 1 355 0 1091 68 17 23 chrY 8117872 8118048 -43395536 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 1601 207 11 28 chrY 8118416 8118779 -43394805 + L1MB8 LINE L1 5782 6138 -40 1451 198 38 0 chrY 8118779 8119042 -43394542 + AluJo SINE Alu 1 273 -39 1775 53 0 0 chrY 8119042 8119250 -43394334 + L1PA4 LINE L1 5947 6154 -1 26 0 0 0 chrY 8119250 8119276 -43394308 + AT_rich Low_complexity Low_complexity 1 26 0 317 123 0 35 chrY 8119280 8119337 -43394247 + L1MB8 LINE L1 6124 6178 0 207 382 42 14 chrY 8120073 8120217 -43393367 - MIR3 SINE MIR -36 172 25 721 238 12 0 chrY 8120316 8120480 -43393104 - L1PB4 LINE L1 -5 6151 5986 1590 168 49 0 chrY 8120607 8120893 -43392691 - MLT1A1 LTR MaLR -2 363 64 1722 190 20 72 chrY 8120940 8121345 -43392239 - MLT1B LTR MaLR -4 386 3 638 181 87 0 chrY 8121657 8121795 -43391789 + MLT2D LTR ERVL 144 293 -121 1778 250 86 26 chrY 8121853 8122434 -43391150 + MLT1E3 LTR MaLR 1 616 -8 4003 102 56 0 chrY 8122444 8123002 -43390582 + L1PA10 LINE L1 5576 6164 -4 733 230 0 0 chrY 8123295 8123421 -43390163 - FLAM_C SINE Alu -7 126 1 201 121 0 0 chrY 8123498 8123531 -43390053 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2100 128 0 10 chrY 8123602 8123906 -43389678 + AluY SINE Alu 1 301 -10 207 0 0 0 chrY 8123908 8123931 -43389653 + (GGAGAA)n Simple_repeat Simple_repeat 3 25 0 1629 175 0 36 chrY 8124075 8124384 -43389200 + AluJo SINE Alu 1 298 -14 944 202 77 37 chrY 8124725 8125013 -43388571 - MSTD LTR MaLR -1 395 49 1906 161 7 0 chrY 8125013 8125311 -43388273 - AluSx SINE Alu -12 300 1 944 202 77 37 chrY 8125311 8125362 -43388222 - MSTD LTR MaLR -347 49 1 974 239 12 36 chrY 8125546 8125797 -43387787 + AluJo SINE Alu 14 258 -54 1188 274 17 59 chrY 8126668 8126779 -43386805 + MER44D DNA MER2_type 1 115 -2472 239 0 32 0 chrY 8126779 8126810 -43386774 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1979 154 0 0 chrY 8126812 8127092 -43386492 - AluSx SINE Alu -32 280 1 1188 274 17 59 chrY 8127092 8127335 -43386249 + MER44D DNA MER2_type 116 343 -362 1565 177 41 38 chrY 8127619 8127963 -43385621 + Tigger7 DNA MER2_type 2139 2483 -4 2191 121 0 0 chrY 8128116 8128414 -43385170 + AluY SINE Alu 1 298 -13 1757 174 10 3 chrY 8128437 8128735 -43384849 - AluSx SINE Alu -12 300 1 1014 139 35 60 chrY 8129262 8129463 -43384121 + MLT2A2 LTR ERVL 258 453 0 3263 119 80 25 chrY 8130387 8130948 -43382636 + MER4B LTR ERV1 10 601 -9 3947 155 19 13 chrY 8131507 8131630 -43381954 - MER41B LTR ERV1 0 635 514 1848 152 41 0 chrY 8131630 8131920 -43381664 + AluSx SINE Alu 1 302 -10 3947 155 19 13 chrY 8131920 8132427 -43381157 - MER41B LTR ERV1 -121 514 1 366 284 0 0 chrY 8132482 8132563 -43381021 + Tigger4(Zombi) DNA MER2_type 1 81 -2650 1592 205 0 13 chrY 8132621 8132923 -43380661 - AluJo SINE Alu -14 298 1 431 97 0 14 chrY 8132924 8132996 -43380588 + Tigger4(Zombi) DNA MER2_type 2480 2550 -181 1416 206 25 4 chrY 8132996 8133277 -43380307 + AluJo SINE Alu 1 287 -25 894 189 11 6 chrY 8133322 8133502 -43380082 + Tigger4(Zombi) DNA MER2_type 2545 2725 -6 1574 182 0 44 chrY 8133908 8134227 -43379357 + AluJb SINE Alu 1 306 0 186 103 0 0 chrY 8134402 8134431 -43379153 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2278 135 82 15 chrY 8134760 8135101 -43378483 - THE1B LTR MaLR 0 364 1 2773 42 0 0 chrY 8136011 8136324 -43377260 + L1PA3 LINE L1 5840 6152 -3 481 149 22 39 chrY 8136463 8136700 -43376884 + CT-rich Low_complexity Low_complexity 1 233 0 500 213 17 33 chrY 8136754 8137554 -43376030 + CT-rich Low_complexity Low_complexity 1 786 0 212 200 18 0 chrY 8137547 8137602 -43375982 + C-rich Low_complexity Low_complexity 3 58 0 * 226 223 32 11 chrY 8137602 8137696 -43375888 + T-rich Low_complexity Low_complexity 4 99 0 363 177 9 35 chrY 8137710 8137823 -43375761 + CT-rich Low_complexity Low_complexity 4 113 0 331 258 13 7 chrY 8137844 8137999 -43375585 + CT-rich Low_complexity Low_complexity 1 156 0 1250 234 42 60 chrY 8138356 8138740 -43374844 + MLT1B LTR MaLR 1 377 -13 1156 209 7 9 chrY 8138736 8138970 -43374614 + MLT1B LTR MaLR 159 396 0 * 1130 154 9 69 chrY 8138971 8139204 -43374380 + MLT1B LTR MaLR 159 377 -13 455 102 8 211 chrY 8139846 8139919 -43373665 - Tigger5 DNA MER2_type 0 2323 2285 1557 204 13 3 chrY 8139919 8140227 -43373357 + AluJo SINE Alu 1 311 -1 455 102 8 211 chrY 8140227 8140281 -43373303 - Tigger5 DNA MER2_type -38 2285 2222 264 313 56 25 chrY 8140280 8140440 -43373144 - LTR16C LTR ERVL -29 462 298 * 1178 215 71 62 chrY 8140686 8141071 -43372513 + MLT1B LTR MaLR 4 396 0 369 351 5 39 chrY 8141163 8141368 -43372216 - LTR16C LTR ERVL -233 258 61 454 225 153 80 chrY 8141417 8141782 -43371802 + L1ME3A LINE L1 4883 5274 -872 586 281 47 71 chrY 8141870 8142052 -43371532 + L1ME3A LINE L1 5385 5570 -596 1920 126 10 40 chrY 8142052 8142354 -43371230 - AluSx SINE Alu -19 293 1 586 281 47 71 chrY 8142354 8142708 -43370876 + L1ME3A LINE L1 5570 5919 -247 844 101 0 17 chrY 8142739 8142880 -43370704 - L1PA10 LINE L1 0 6168 6035 1893 169 54 17 chrY 8142880 8143234 -43370350 - L1PB4 LINE L1 -8 6148 5782 182 171 24 0 chrY 8143234 8143275 -43370309 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 264 283 33 0 chrY 8143276 8143368 -43370216 + L1MC4 LINE L1 6614 6708 -1334 * 1092 154 53 8 chrY 8143345 8143550 -43370034 - L1M4 LINE L1 -364 5792 5579 1648 179 7 40 chrY 8143899 8144059 -43369525 + AluJo SINE Alu 2 149 -163 2758 122 47 0 chrY 8144059 8144468 -43369116 - MSTA LTR MaLR 0 428 1 1648 179 7 40 chrY 8144468 8144608 -43368976 + AluJo SINE Alu 149 292 -20 1479 207 29 4 chrY 8145315 8145595 -43367989 + AluJo SINE Alu 1 287 -25 225 305 0 0 chrY 8146090 8146149 -43367435 - LTR16A LTR ERVL -7 443 385 260 193 61 26 chrY 8146418 8146532 -43367052 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 618 14 0 0 chrY 8146537 8146608 -43366976 + (ATATG)n Simple_repeat Simple_repeat 5 75 0 382 49 33 0 chrY 8146608 8146669 -43366915 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 533 105 35 35 chrY 8146688 8146859 -43366725 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 427 119 36 42 chrY 8146884 8147052 -43366532 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 209 111 44 0 chrY 8147087 8147132 -43366452 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 279 0 0 0 chrY 8147891 8147922 -43365662 + (TG)n Simple_repeat Simple_repeat 2 32 0 1111 188 34 21 chrY 8148032 8148266 -43365318 - AluJo SINE Alu -29 283 47 1450 211 50 0 chrY 8148321 8148620 -43364964 - MER2 DNA MER2_type -31 314 1 1453 181 3 64 chrY 8149072 8149386 -43364198 + AluJo SINE Alu 12 306 -6 567 135 0 0 chrY 8149386 8149482 -43364102 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 1446 193 65 0 chrY 8150664 8150939 -43362645 + AluJb SINE Alu 1 293 -19 7088 55 1 0 chrY 8150974 8151804 -43361780 + L1PA4 LINE L1 5323 6153 -2 26 0 0 0 chrY 8151804 8151830 -43361754 + AT_rich Low_complexity Low_complexity 1 26 0 214 114 0 0 chrY 8153035 8153070 -43360514 - L2 LINE L2 -3 3269 3235 2191 179 25 6 chrY 8153301 8153658 -43359926 - THE1B LTR MaLR 0 364 1 618 241 97 0 chrY 8153688 8153833 -43359751 + AluSg/x SINE Alu 138 296 -16 2738 115 13 68 chrY 8154058 8154598 -43358986 + L1PA6 LINE L1 3840 4349 -1797 6620 74 12 2 chrY 8154598 8156114 -43357470 + L1PA6 LINE L1 4636 6154 0 464 236 9 0 chrY 8156281 8156387 -43357197 - Tigger2 DNA MER2_type -11 2707 2601 375 204 48 12 chrY 8156471 8156638 -43356946 + (TA)n Simple_repeat Simple_repeat 2 174 0 41 66 0 0 chrY 8156643 8156719 -43356865 + AT_rich Low_complexity Low_complexity 1 76 0 1465 164 70 32 chrY 8156804 8157117 -43356467 - Tigger2 DNA MER2_type -109 2609 1 2575 50 0 0 chrY 8157145 8157444 -43356140 + AluY SINE Alu 1 299 -12 254 261 46 0 chrY 8157532 8157662 -43355922 + (TA)n Simple_repeat Simple_repeat 1 136 0 1861 156 0 0 chrY 8157800 8158075 -43355509 - AluSx SINE Alu -19 293 19 536 253 39 39 chrY 8158099 8158277 -43355307 - MER20 DNA MER1_type -33 186 9 579 163 0 113 chrY 8158568 8158582 -43355002 + LTR62 LTR ERVK 1 15 -704 2076 173 14 6 chrY 8158582 8158941 -43354643 - THE1B LTR MaLR -2 362 1 579 163 0 113 chrY 8158941 8159086 -43354498 + LTR62 LTR ERVK 15 142 -577 230 186 0 0 chrY 8159086 8159129 -43354455 + LTR30 LTR ERV1 1 43 -679 704 213 25 31 chrY 8159129 8159403 -43354181 + LTR12 LTR ERV1 62 234 -480 2463 58 0 0 chrY 8159442 8159752 -43353832 + L1PA3 LINE L1 5843 6152 -3 288 279 0 0 chrY 8159777 8159845 -43353739 + MER106B DNA MER1_type 1 68 -991 39635 52 2 2 chrY 8159859 8165855 -43347729 + L1PA3 LINE L1 127 6127 -28 216 67 0 0 chrY 8165860 8165890 -43347694 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 865 220 0 0 chrY 8165918 8166091 -43347493 + L1PA15 LINE L1 5993 6165 0 982 139 6 12 chrY 8166564 8166737 -43346847 - L1PA13 LINE L1 0 6163 5992 1731 80 0 0 chrY 8167473 8167743 -43345841 + L1PA7 LINE L1 5912 6181 0 1954 166 3 0 chrY 8167821 8168122 -43345462 - AluSx SINE Alu -10 302 1 237 33 0 0 chrY 8169037 8169067 -43344517 + (TG)n Simple_repeat Simple_repeat 2 31 0 207 139 0 0 chrY 8169396 8169432 -43344152 + (TC)n Simple_repeat Simple_repeat 1 36 0 180 273 26 78 chrY 8169463 8169540 -43344044 - L3 LINE CR1 0 1577 1505 691 282 98 25 chrY 8169599 8169996 -43343588 - MER77 LTR ERV1 -7 598 173 379 250 92 0 chrY 8170044 8170164 -43343420 - MER77 LTR ERV1 -406 199 69 236 257 29 0 chrY 8170354 8170424 -43343160 + MER96B DNA MER1_type? 345 416 -1 311 111 0 19 chrY 8170456 8170510 -43343074 + (TA)n Simple_repeat Simple_repeat 2 54 0 208 184 54 0 chrY 8170557 8170704 -43342880 + (TA)n Simple_repeat Simple_repeat 1 155 0 209 33 33 0 chrY 8170785 8170815 -43342769 + (TA)n Simple_repeat Simple_repeat 1 31 0 267 247 12 12 chrY 8170839 8170920 -43342664 - Tigger5 DNA MER2_type 0 2323 2243 792 173 0 23 chrY 8171017 8171150 -43342434 + FLAM_C SINE Alu 1 130 -3 1432 228 10 3 chrY 8171164 8171458 -43342126 + AluJo SINE Alu 1 296 -16 255 152 0 0 chrY 8171493 8171539 -43342045 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1777 166 85 39 chrY 8171576 8172011 -43341573 - LTR2B LTR ERV1 0 490 36 9269 86 5 1 chrY 8172034 8173347 -43340237 - Harlequin LTR ERV1 0 6896 5578 1098 96 0 0 chrY 8173349 8173485 -43340099 + AluY SINE Alu 1 136 -175 10556 76 16 3 chrY 8173489 8174928 -43338656 - Harlequin LTR ERV1 -1943 4953 3496 20035 91 57 39 chrY 8174928 8178246 -43335338 - Harlequin LTR ERV1 -3517 3379 1 1295 234 75 35 chrY 8178250 8178674 -43334910 - LTR2B LTR ERV1 -16 474 34 421 290 6 19 chrY 8178749 8178868 -43334716 - MER96B DNA MER1_type? -5 412 294 1979 155 7 0 chrY 8178868 8179165 -43334419 + AluSx SINE Alu 1 299 -13 421 290 6 19 chrY 8179165 8179207 -43334377 - MER96B DNA MER1_type? -123 294 253 1985 142 36 0 chrY 8179474 8179776 -43333808 - AluSp SINE Alu 0 313 1 1571 214 72 2 chrY 8179882 8180297 -43333287 + L1MC3 LINE L1 7325 7768 -17 1391 197 7 36 chrY 8180304 8180608 -43332976 + AluJb SINE Alu 2 296 -16 576 207 95 18 chrY 8181071 8181240 -43332344 - MER34C LTR ERV1 -3 582 401 * 2100 155 61 26 chrY 8181232 8181659 -43331925 - MER4B LTR ERV1 -160 450 9 341 239 26 52 chrY 8181867 8182018 -43331566 - L1MB7 LINE L1 -10 6174 6025 1435 142 77 0 chrY 8182066 8182326 -43331258 + MER4E LTR ERV1 1 280 -499 4287 124 18 137 chrY 8182327 8183802 -43329782 - pTR5 LTR ERV1 0 2606 1524 2753 147 26 30 chrY 8183802 8184307 -43329277 + MER4E LTR ERV1 277 779 0 507 229 39 56 chrY 8184332 8184511 -43329073 + LTR8A LTR ERV1 298 473 -254 543 213 67 0 chrY 8184527 8184691 -43328893 - L1MB7 LINE L1 -190 5988 5814 1430 175 38 16 chrY 8184708 8185023 -43328561 - L1MC1 LINE L1 0 6333 6012 3410 113 49 6 chrY 8185023 8185554 -43328030 + MER41A LTR ERV1 1 554 0 1948 156 39 28 chrY 8186558 8186918 -43326666 - THE1B LTR MaLR 0 364 1 419 222 26 0 chrY 8187184 8187337 -43326247 + (TA)n Simple_repeat Simple_repeat 2 158 0 652 226 5 38 chrY 8187349 8187364 -43326220 - MLT1C LTR MaLR -112 355 341 1790 158 32 45 chrY 8187364 8187744 -43325840 - THE1C LTR MaLR 0 375 1 652 226 5 38 chrY 8187744 8187914 -43325670 - MLT1C LTR MaLR -126 341 176 855 119 0 0 chrY 8187934 8188052 -43325532 - AluSq/x SINE Alu -194 118 1 636 173 73 45 chrY 8188052 8188231 -43325353 - MLT1C LTR MaLR -281 186 3 1943 137 37 7 chrY 8188603 8188903 -43324681 - AluSx SINE Alu -3 309 1 1543 199 3 34 chrY 8189008 8189330 -43324254 - AluJb SINE Alu 0 312 1 1773 192 0 0 chrY 8189647 8189944 -43323640 + AluJo SINE Alu 1 297 -15 1846 175 3 0 chrY 8190243 8190534 -43323050 + AluSx SINE Alu 1 292 -20 1029 213 136 37 chrY 8190955 8191228 -43322356 - AluJb SINE Alu -1 311 12 16648 56 3 3 chrY 8193191 8196112 -43317472 - L1PA5 LINE L1 -6 6148 3228 6636 74 34 0 chrY 8196115 8197075 -43316509 + L1PA5 LINE L1 2224 3216 -2930 240 35 0 0 chrY 8197583 8197612 -43315972 + (TC)n Simple_repeat Simple_repeat 2 30 0 2195 106 3 7 chrY 8197682 8197984 -43315600 + AluSg SINE Alu 1 301 -9 854 44 0 0 chrY 8198120 8198233 -43315351 - L1PA3 LINE L1 -186 5969 5857 1530 43 0 0 chrY 8198233 8198417 -43315167 + L1PA3 LINE L1 5968 6153 -2 237 182 18 0 chrY 8198440 8198495 -43315089 + A-rich Low_complexity Low_complexity 4 59 0 241 345 82 9 chrY 8198689 8198799 -43314785 - MIR3 SINE MIR -8 200 83 1615 194 0 35 chrY 8198909 8199219 -43314365 + AluJo SINE Alu 1 299 -13 1741 207 0 0 chrY 8199329 8199629 -43313955 - AluSx SINE Alu -12 300 1 205 267 0 0 chrY 8199712 8199757 -43313827 + (TG)n Simple_repeat Simple_repeat 1 45 0 28 29 0 0 chrY 8200321 8200356 -43313228 + AT_rich Low_complexity Low_complexity 1 35 0 1363 206 0 34 chrY 8200368 8200635 -43312949 - AluJo SINE Alu -54 258 1 657 227 8 0 chrY 8200781 8200913 -43312671 + FLAM_C SINE Alu 1 133 0 1438 170 42 8 chrY 8200937 8201196 -43312388 + AluJb SINE Alu 23 290 -22 305 146 37 12 chrY 8201196 8201278 -43312306 + (TA)n Simple_repeat Simple_repeat 1 84 0 2110 134 0 0 chrY 8201368 8201659 -43311925 - AluSx SINE Alu -16 296 6 1870 161 3 3 chrY 8201806 8202086 -43311498 + AluSx SINE Alu 3 283 -25 180 0 0 0 chrY 8202086 8202106 -43311478 + (CA)n Simple_repeat Simple_repeat 1 20 0 2123 109 7 3 chrY 8202114 8202408 -43311176 + AluSx SINE Alu 7 301 -11 4372 128 44 0 chrY 8202586 8203248 -43310336 - LTR8 LTR ERV1 0 691 1 2049 167 92 0 chrY 8203763 8204153 -43309431 + MSTA LTR MaLR 1 426 -2 2275 104 0 7 chrY 8204205 8204513 -43309071 - AluY SINE Alu -3 308 3 2024 154 3 0 chrY 8204572 8204878 -43308706 + AluSx SINE Alu 1 307 -5 415 174 10 31 chrY 8204961 8205059 -43308525 + L1MC2 LINE L1 6073 6168 -176 1280 177 2 40 chrY 8205059 8205568 -43308016 + MER4A LTR ERV1 1 558 -106 41379 70 3 4 chrY 8205701 8211850 -43301734 + L1PA4 LINE L1 2 6142 -13 257 274 42 0 chrY 8211854 8211949 -43301635 + LTR30 LTR ERV1 516 614 -108 804 165 24 0 chrY 8211951 8212078 -43301506 + LTR12 LTR ERV1 351 480 -234 438 103 0 0 chrY 8212081 8212139 -43301445 + Alu SINE Alu 238 295 -15 2793 139 14 91 chrY 8212139 8212230 -43301354 + MER4B LTR ERV1 19 115 -664 2009 156 0 3 chrY 8212230 8212537 -43301047 + AluSq SINE Alu 1 306 -7 2793 139 14 91 chrY 8212537 8213007 -43300577 + MER4B LTR ERV1 115 689 -90 3604 156 34 11 chrY 8213007 8213628 -43299956 + MER41B LTR ERV1 1 635 0 2793 139 14 91 chrY 8213628 8213713 -43299871 + MER4B LTR ERV1 689 779 0 396 145 26 0 chrY 8213714 8213790 -43299794 + L1MC2 LINE L1 6255 6332 -12 257 160 0 40 chrY 8214255 8214305 -43299279 + LTR30 LTR ERV1 1 48 -674 1301 165 157 30 chrY 8214305 8214764 -43298820 + pTR5 LTR ERV1 57 480 -234 1662 209 62 81 chrY 8215493 8216009 -43297575 + LTR64 LTR ERVK 43 548 -10 1733 147 4 0 chrY 8216063 8216328 -43297256 - AluY SINE Alu -45 266 1 745 201 0 8 chrY 8216329 8216463 -43297121 - AluJb SINE Alu -178 134 2 193 109 43 0 chrY 8216480 8216526 -43297058 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2294 198 27 5 chrY 8216762 8217211 -43296373 + MLT2C2 LTR ERVL 1 459 -5 1910 95 89 131 chrY 8217615 8218026 -43295558 - LTR14B LTR ERVK -5 603 1 2855 105 66 0 chrY 8218223 8218632 -43294952 - MLT2A1 LTR ERVL -8 436 1 1821 125 88 4 chrY 8219579 8219851 -43293733 - AluSc SINE Alu -14 295 1 1295 229 35 7 chrY 8220357 8220645 -43292939 - AluJb SINE Alu -16 296 1 443 282 14 57 chrY 8221391 8221600 -43291984 + LTR4 LTR ERV1 1 200 -396 554 268 65 51 chrY 8221786 8222062 -43291522 + LTR4 LTR ERV1 317 596 0 581 256 17 28 chrY 8223292 8223472 -43290112 - MER39 LTR ERV1 0 707 530 743 224 0 0 chrY 8223475 8223622 -43289962 - AluJb SINE Alu -31 281 135 309 151 0 0 chrY 8223622 8223675 -43289909 + (TA)n Simple_repeat Simple_repeat 2 54 0 337 204 23 0 chrY 8223675 8223763 -43289821 + L1MC4 LINE L1 6614 6703 -1339 700 194 0 8 chrY 8223790 8223919 -43289665 - AluSq/x SINE Alu -184 129 2 541 198 27 94 chrY 8223947 8224189 -43289395 - MER39 LTR ERV1 -206 501 150 232 239 0 0 chrY 8224402 8224448 -43289136 - MER39 LTR ERV1 -661 46 1 661 215 0 0 chrY 8224806 8224936 -43288648 - FRAM SINE Alu -2 174 45 1069 207 10 5 chrY 8225160 8225358 -43288226 + MER58A DNA MER1_type 26 224 0 1675 227 57 4 chrY 8225618 8226054 -43287530 + MER89 LTR ERV1 1 559 0 1637 204 43 6 chrY 8226856 8227208 -43286376 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chrY 8227558 8227581 -43286003 + AT_rich Low_complexity Low_complexity 1 23 0 1756 182 49 0 chrY 8228103 8228411 -43285173 + MST-int LTR MaLR 1249 1571 -80 1958 124 0 40 chrY 8228419 8228746 -43284838 + AluY SINE Alu 6 311 0 2398 187 15 41 chrY 8228747 8229062 -43284522 - L1MB5 LINE L1 -37 6137 5840 2199 112 3 7 chrY 8229062 8229365 -43284219 - AluSc SINE Alu -1 308 7 2398 187 15 41 chrY 8229365 8229588 -43283996 - L1MB5 LINE L1 -334 5840 5613 1700 210 0 0 chrY 8229616 8229907 -43283677 + AluJo SINE Alu 3 293 -19 585 238 123 87 chrY 8230554 8231045 -43282539 - MER34C LTR ERV1 -64 501 5 235 176 39 20 chrY 8231298 8231349 -43282235 + MLT1C LTR MaLR 130 181 -209 776 179 0 7 chrY 8231349 8231489 -43282095 + AluJb SINE Alu 3 141 -171 1116 254 17 17 chrY 8231517 8231816 -43281768 + MLT1C LTR MaLR 169 467 0 3270 140 22 15 chrY 8232104 8232647 -43280937 - L1PB4 LINE L1 0 6156 5610 216 327 109 27 chrY 8233234 8233491 -43280093 - L2 LINE L2 -167 3105 2828 289 315 216 4 chrY 8233812 8234066 -43279518 + L2 LINE L2 2963 3270 -2 235 228 0 35 chrY 8234362 8234419 -43279165 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 680 218 63 17 chrY 8235342 8235516 -43278068 - AluJb SINE Alu -15 297 116 809 234 152 4 chrY 8235616 8235885 -43277699 - MLT1E2 LTR MaLR -207 419 111 3651 30 0 0 chrY 8237056 8237487 -43276097 - L1P LINE L1 -1014 5132 4702 * 5981 31 0 4 chrY 8237484 8238190 -43275394 + L1P LINE L1 4003 4705 -1441 2386 94 0 0 chrY 8239788 8240097 -43273487 + AluY SINE Alu 3 311 0 234 0 0 0 chrY 8242100 8242126 -43271458 + (TG)n Simple_repeat Simple_repeat 2 27 0 306 313 8 31 chrY 8243116 8243244 -43270340 + L2 LINE L2 2715 2839 -475 264 200 0 0 chrY 11245423 11245473 -40268111 + AluJ/FRAM SINE Alu 233 282 -20 441 0 0 0 chrY 11245485 11245534 -40268050 + (TAA)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chrY 11245533 11245555 -40268029 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 980 252 65 9 chrY 11245664 11246367 -40267217 - L1M4 LINE L1 -3542 2840 2098 484 249 81 1 chrY 11246484 11246705 -40266879 - L1M4 LINE L1 -4456 1926 1612 434 295 57 34 chrY 11246731 11247096 -40266488 - L1M4 LINE L1 -4517 1786 1128 247 81 0 27 chrY 11247108 11247145 -40266439 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 353 147 0 15 chrY 11247146 11247214 -40266370 + (TCCCC)n Simple_repeat Simple_repeat 5 71 0 851 228 103 23 chrY 11247218 11247481 -40266103 - AluJo SINE Alu -3 309 26 332 276 24 24 chrY 11247483 11247610 -40265974 - L1M4 LINE L1 -5265 1119 993 663 266 15 0 chrY 11247621 11247824 -40265760 + L1MB2 LINE L1 3734 3939 -2207 1281 221 4 30 chrY 11247828 11248090 -40265494 + AluJo SINE Alu 1 255 -57 204 40 0 0 chrY 11248119 11248144 -40265440 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2158 254 87 44 chrY 11248171 11248471 -40265113 + L1MB2 LINE L1 3967 4253 -1893 387 0 0 0 chrY 11248471 11248514 -40265070 + (CA)n Simple_repeat Simple_repeat 2 44 0 2158 254 87 44 chrY 11248514 11249401 -40264183 + L1MB2 LINE L1 4253 5205 -941 243 0 0 0 chrY 11249401 11249428 -40264156 + (A)n Simple_repeat Simple_repeat 1 27 0 1734 208 89 109 chrY 11249433 11249982 -40263602 + L1MB2 LINE L1 5299 5857 -314 1475 113 5 0 chrY 11249982 11250177 -40263407 + AluSc SINE Alu 1 196 -113 337 115 16 0 chrY 11250178 11250239 -40263345 + AluSc SINE Alu 238 299 0 1734 208 89 109 chrY 11250239 11250478 -40263106 + L1MB2 LINE L1 5856 6132 -39 1952 160 7 0 chrY 11250499 11250805 -40262779 + AluSx SINE Alu 5 312 0 651 244 76 23 chrY 11250836 11251139 -40262445 + Charlie2 DNA MER1_type 2004 2322 -540 638 329 71 53 chrY 11251274 11251912 -40261672 - L2 LINE L2 -255 3058 2415 1339 188 22 43 chrY 11251974 11252251 -40261333 - AluJo SINE Alu -21 291 21 749 226 84 8 chrY 11252327 11252694 -40260890 + Charlie2 DNA MER1_type 2393 2787 -75 430 320 74 7 chrY 11252740 11253024 -40260560 - L1ME LINE L1 -482 5688 5386 424 258 27 86 chrY 11253162 11253245 -40260339 - L1ME LINE L1 -888 5258 5172 1646 197 17 14 chrY 11253245 11253535 -40260049 + AluJb SINE Alu 1 291 -21 424 258 27 86 chrY 11253535 11253672 -40259912 - L1ME LINE L1 -974 5172 5051 335 263 103 67 chrY 11253684 11253908 -40259676 + L1ME3A LINE L1 5793 6024 -146 314 331 83 6 chrY 11254005 11254174 -40259410 + MIR SINE MIR 9 190 -72 807 269 47 25 chrY 11254316 11254595 -40258989 - MLT1E LTR MaLR -1 592 308 250 267 13 13 chrY 11254605 11254680 -40258904 - MLT1F LTR MaLR -467 75 1 2099 128 3 0 chrY 11254832 11255129 -40258455 + AluSg1 SINE Alu 1 298 -11 236 190 0 89 chrY 11256269 11256348 -40257236 + CT-rich Low_complexity Low_complexity 4 75 0 2736 93 30 5 chrY 11256968 11257396 -40256188 - LTR7 LTR ERV1 -11 439 1 500 228 80 25 chrY 11257526 11257619 -40255965 + MER45A DNA AcHobo 1 108 -1473 1865 163 30 3 chrY 11257619 11257920 -40255664 - AluSx SINE Alu -3 309 1 500 228 80 25 chrY 11257920 11257988 -40255596 + MER45A DNA AcHobo 108 171 -7 336 323 74 9 chrY 11258230 11258447 -40255137 - LTR50 LTR ERVL -112 683 453 863 273 92 44 chrY 11258799 11259254 -40254330 + L1M4 LINE L1 8 484 -6058 877 267 31 16 chrY 11259272 11259737 -40253847 - MER74A LTR ERVL 0 622 89 373 314 80 29 chrY 11259782 11260021 -40253563 + L1M4 LINE L1 523 773 -5769 951 167 103 138 chrY 11260040 11260203 -40253381 + AluY SINE Alu 1 149 -152 1191 112 0 0 chrY 11260203 11260382 -40253202 + (GAA)n Simple_repeat Simple_repeat 1 179 0 951 167 103 138 chrY 11260382 11260529 -40253055 + AluY SINE Alu 149 300 -1 213 296 0 0 chrY 11260538 11260609 -40252975 + A-rich Low_complexity Low_complexity 1 71 0 467 257 71 11 chrY 11260633 11260816 -40252768 + L1M4 LINE L1 984 1177 -5365 264 230 40 20 chrY 11260862 11260962 -40252622 - L1MA8 LINE L1 -3 6288 6187 654 200 75 0 chrY 11260998 11261118 -40252466 - FLAM_A SINE Alu 0 133 5 599 201 20 106 chrY 11261118 11261372 -40252212 - L1M3e LINE L1 -3280 3048 2817 497 129 43 0 chrY 11261421 11261514 -40252070 + L1 LINE L1 3479 3575 -2571 902 227 33 115 chrY 11261566 11262050 -40251534 - L1M3e LINE L1 -3514 2814 2379 2198 96 0 20 chrY 11262050 11262343 -40251241 - AluSc SINE Alu -22 287 1 902 227 33 115 chrY 11262343 11262405 -40251179 - L1M3e LINE L1 -3949 2379 2313 376 156 0 0 chrY 11262410 11262474 -40251110 - AluSx SINE Alu -9 292 229 666 229 28 1 chrY 11262501 11262687 -40250897 - MER61E LTR ERV1 -6 773 340 361 174 65 11 chrY 11262865 11262957 -40250627 - LTR25 LTR ERV1 -428 366 270 1251 155 0 21 chrY 11263130 11263324 -40250260 - AluSq SINE Alu -24 289 100 294 95 0 0 chrY 11263324 11263366 -40250218 + (A)n Simple_repeat Simple_repeat 1 42 0 839 129 9 0 chrY 11263366 11263482 -40250102 - AluSq SINE Alu -196 117 1 267 233 56 33 chrY 11263485 11263575 -40250009 - LTR9 LTR ERV1 -512 100 9 1259 173 4 76 chrY 11263583 11263681 -40249903 - AluSx SINE Alu -79 233 129 2154 113 3 10 chrY 11263681 11263982 -40249602 - AluSg SINE Alu -11 299 1 1259 173 4 76 chrY 11263982 11264132 -40249452 - AluSx SINE Alu -183 129 3 1299 240 182 42 chrY 11264133 11264389 -40249195 - L1M3e LINE L1 -3996 2332 2113 1951 133 4 7 chrY 11264389 11264696 -40248888 + AluSp SINE Alu 5 310 0 1299 240 182 42 chrY 11264696 11264785 -40248799 - L1M3e LINE L1 -4215 2113 2038 1149 210 100 15 chrY 11264785 11265056 -40248528 - AluJb SINE Alu -8 294 1 1299 240 182 42 chrY 11265056 11265667 -40247917 - L1M3e LINE L1 -4290 2038 1260 21 36 0 0 chrY 11265682 11265710 -40247874 + AT_rich Low_complexity Low_complexity 1 28 0 222 134 45 0 chrY 11265719 11265786 -40247798 + (TA)n Simple_repeat Simple_repeat 1 70 0 550 219 65 14 chrY 11265810 11266025 -40247559 - L1 LINE L1 -4141 1187 962 471 149 0 0 chrY 11266035 11266109 -40247475 + AluS SINE Alu 229 302 -10 381 242 63 77 chrY 11266130 11266211 -40247373 - L1M3e LINE L1 -4984 1268 1187 2097 138 0 7 chrY 11266211 11266507 -40247077 - AluSx SINE Alu -18 294 1 381 242 63 77 chrY 11266507 11266675 -40246909 - L1M3e LINE L1 -5065 1187 1018 2201 173 68 15 chrY 11266675 11267142 -40246442 + LTR22B LTR ERVK 1 492 0 381 242 63 77 chrY 11267142 11267187 -40246397 - L1M3e LINE L1 -5234 1018 661 228 371 9 0 chrY 11267288 11267404 -40246180 - L1M3e LINE L1 -4754 574 458 1097 153 67 40 chrY 11267413 11267636 -40245948 + MER30 DNA MER1_type 2 230 0 4200 216 79 61 chrY 11267654 11269103 -40244481 + L1PB4 LINE L1 27 1448 -4880 1820 187 0 3 chrY 11269103 11269397 -40244187 + AluSx SINE Alu 1 293 -19 4200 216 79 61 chrY 11269397 11270258 -40243326 + L1PB4 LINE L1 1448 2383 -3945 1550 217 3 6 chrY 11270258 11270571 -40243013 + AluJb SINE Alu 1 312 0 4200 216 79 61 chrY 11270571 11271220 -40242364 + L1PB4 LINE L1 2383 3018 -3310 1186 238 13 16 chrY 11271242 11271530 -40242054 + L1PB4 LINE L1 4558 4846 -1482 198 0 0 0 chrY 11271530 11271552 -40242032 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1186 238 13 16 chrY 11271552 11271641 -40241943 + L1PB4 LINE L1 4846 4934 -1394 1710 176 3 14 chrY 11271642 11271931 -40241653 + AluJb SINE Alu 3 288 -24 198 50 75 0 chrY 11271931 11271971 -40241613 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chrY 11272009 11272030 -40241554 + AT_rich Low_complexity Low_complexity 1 21 0 243 241 101 0 chrY 11272055 11272134 -40241450 + L1MC4 LINE L1 6612 6698 -1344 1016 230 22 4 chrY 11272143 11272417 -40241167 + L1PB4 LINE L1 4920 5198 -1130 3855 164 7 4 chrY 11272417 11273155 -40240429 - L1P LINE L1 -1195 4951 4212 4285 131 10 0 chrY 11273159 11273832 -40239752 + L1PA10 LINE L1 5486 6165 -3 1852 148 0 0 chrY 11273860 11274131 -40239453 - AluSx SINE Alu -41 271 1 4303 185 39 1 chrY 11274135 11275191 -40238393 + L1PB4 LINE L1 5227 6330 -8 461 306 48 77 chrY 11275282 11275402 -40238182 + L1MC4a LINE L1 4910 5032 -1114 2158 136 10 0 chrY 11275402 11275711 -40237873 + AluSx SINE Alu 1 312 0 461 306 48 77 chrY 11275711 11276087 -40237497 + L1MC4a LINE L1 5032 5392 -754 2232 120 3 0 chrY 11276090 11276389 -40237195 + AluSg SINE Alu 1 300 -10 1046 233 39 16 chrY 11276434 11276692 -40236892 + AluJo SINE Alu 19 282 -30 1102 293 75 22 chrY 11276730 11277358 -40236226 + L1MC4a LINE L1 5440 6100 -1708 3902 237 76 96 chrY 11277367 11278519 -40235065 - L1PA15-16 LINE L1 -3733 3116 1942 996 177 0 0 chrY 11278519 11278692 -40234892 - AluSg/x SINE Alu 0 306 134 3902 237 76 96 chrY 11278692 11279724 -40233860 - L1PA15-16 LINE L1 -4907 1942 600 1719 209 24 40 chrY 11279727 11280034 -40233550 - L1PA15-16 LINE L1 -6433 416 116 2173 137 0 9 chrY 11280034 11280349 -40233235 - AluSx SINE Alu 0 312 1 1719 209 24 40 chrY 11280349 11280462 -40233122 - L1PA15-16 LINE L1 -6733 116 3 471 214 24 8 chrY 11280467 11280593 -40232991 - L1M4c LINE L1 -2535 3847 3720 574 183 161 0 chrY 11280695 11280832 -40232752 + AluJb SINE Alu 1 159 -153 384 249 138 37 chrY 11280860 11281185 -40232399 - L1M4c LINE L1 -2694 3688 3331 360 285 48 30 chrY 11281200 11281470 -40232114 - L1M4c LINE L1 -3270 3112 2702 185 269 0 8 chrY 11281493 11281627 -40231957 + (TA)n Simple_repeat Simple_repeat 2 134 0 1063 200 10 10 chrY 11281676 11281876 -40231708 - AluJb SINE Alu -112 200 1 2095 125 23 0 chrY 11282042 11282345 -40231239 + AluSg SINE Alu 1 310 0 1217 153 13 47 chrY 11282983 11283219 -40230365 + MER57A LTR ERV1 135 362 -41 482 191 91 100 chrY 11283232 11283462 -40230122 - L1M4c LINE L1 -4014 2370 2143 1329 291 79 16 chrY 11283553 11284595 -40228989 - L1M4c LINE L1 -4244 2139 1041 366 327 75 31 chrY 11285021 11285247 -40228337 - L1M4c LINE L1 -5896 417 182 418 237 109 11 chrY 11285247 11285530 -40228054 + L1MDb LINE L1 1053 1363 -5046 5868 211 153 11 chrY 11285530 11287010 -40226574 - MER52A LTR ERV1 0 1755 67 1181 274 140 41 chrY 11287039 11287338 -40226246 + L1M4 LINE L1 2737 3005 -3141 1374 227 52 0 chrY 11287338 11287607 -40225977 - AluJo SINE Alu -27 285 3 1181 274 140 41 chrY 11287607 11288811 -40224773 + L1M4 LINE L1 3005 4389 -1757 8076 238 61 50 chrY 11288835 11292261 -40221323 + L1MA4A LINE L1 9 3399 -3449 1474 200 54 0 chrY 11292261 11292541 -40221043 + AluJo SINE Alu 5 299 -13 8076 238 61 50 chrY 11292541 11292562 -40221022 + L1MA4A LINE L1 3399 3418 -3430 575 178 44 59 chrY 11292562 11292697 -40220887 + FLAM_C SINE Alu 1 133 0 8076 238 61 50 chrY 11292697 11293341 -40220243 + L1MA4A LINE L1 3418 4148 -2700 1864 142 44 3 chrY 11293341 11293637 -40219947 + AluSg1 SINE Alu 1 308 -1 8076 238 61 50 chrY 11293637 11293883 -40219701 + L1MA4A LINE L1 4148 4390 -2458 2603 203 57 37 chrY 11294034 11294521 -40219063 + L1MA4A LINE L1 5215 5691 -1199 1648 174 8 0 chrY 11294521 11294785 -40218799 + AluSq SINE Alu 24 289 -24 378 57 43 14 chrY 11294788 11294858 -40218726 + (TAAAA)n Simple_repeat Simple_repeat 2 73 0 2603 203 57 37 chrY 11294858 11295293 -40218291 + L1MA4A LINE L1 5692 6145 -745 1722 198 24 54 chrY 11295307 11295364 -40218220 + L1MA4A LINE L1 6520 6577 -428 1645 195 7 0 chrY 11295364 11295651 -40217933 - AluJb SINE Alu -23 289 1 1722 198 24 54 chrY 11295651 11296094 -40217490 + L1MA4A LINE L1 6577 7005 0 360 309 73 0 chrY 11296106 11296242 -40217342 + L1M2 LINE L1 5131 5276 -1572 611 268 130 13 chrY 11296329 11296714 -40216870 + L1M2 LINE L1 5299 5728 -1120 1985 133 7 7 chrY 11297504 11297797 -40215787 - AluSx SINE Alu -17 295 3 2060 115 33 10 chrY 11298146 11298451 -40215133 + AluSq SINE Alu 2 313 0 1966 139 0 44 chrY 11298951 11299267 -40214317 + AluSg SINE Alu 1 302 -8 201 220 40 0 chrY 11300461 11300511 -40213073 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 25 0 0 0 chrY 11300866 11300891 -40212693 + AT_rich Low_complexity Low_complexity 1 25 0 2158 124 7 0 chrY 11301562 11301860 -40211724 - AluSp SINE Alu -11 302 3 22 35 0 0 chrY 11302002 11302031 -40211553 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 11302732 11302753 -40210831 + AT_rich Low_complexity Low_complexity 1 21 0 2797 3 0 0 chrY 11303442 11303744 -40209840 + AluYa5 SINE Alu 1 302 -9 3348 122 8 6 chrY 11304070 11304580 -40209004 + MER9 LTR ERVK 1 511 0 24579 76 9 7 chrY 11304580 11307981 -40205603 + HERVK9 LTR ERVK 1 3409 -2507 15054 73 6 0 chrY 11308003 11310022 -40203562 + HERVK9 LTR ERVK 3603 5634 -282 2064 75 11 0 chrY 11310118 11310397 -40203187 + HERVK9 LTR ERVK 5635 5916 0 3496 115 4 6 chrY 11310397 11310909 -40202675 + MER9 LTR ERVK 1 511 0 200 185 25 111 chrY 11312929 11313010 -40200574 + L2 LINE L2 3171 3244 -69 24 67 0 0 chrY 11313028 11313073 -40200511 + AT_rich Low_complexity Low_complexity 1 45 0 227 285 47 99 chrY 11313792 11313983 -40199601 - MIR3 SINE MIR -63 145 2 2168 116 3 0 chrY 11314105 11314397 -40199187 - AluSq SINE Alu -10 303 11 21 36 0 0 chrY 11314652 11314680 -40198904 + AT_rich Low_complexity Low_complexity 1 28 0 23757 123 55 25 chrY 11315373 11321096 -40192488 - L1PA7 LINE L1 -50 6419 378 552 15 0 0 chrY 11321096 11321161 -40192423 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 23757 123 55 25 chrY 11321161 11321551 -40192033 - L1PA7 LINE L1 -6091 378 1 2947 157 47 32 chrY 11321673 11322266 -40191318 + LTR43 LTR ERV1 1 602 0 1561 207 10 3 chrY 11322343 11322642 -40190942 + AluJb SINE Alu 3 303 -9 201 294 78 0 chrY 11323009 11323060 -40190524 - MIR SINE MIR -196 66 12 267 292 42 0 chrY 11323093 11323165 -40190419 + MIR SINE MIR 113 187 -75 789 255 40 51 chrY 11323232 11323646 -40189938 + MLT1D LTR MaLR 26 500 -5 316 341 59 24 chrY 11323871 11324041 -40189543 - MIR SINE MIR -86 176 1 183 42 0 0 chrY 11324280 11324304 -40189280 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 602 217 51 29 chrY 11324309 11324447 -40189137 - AluSc SINE Alu -37 272 132 224 203 38 0 chrY 11325364 11325443 -40188141 + (TA)n Simple_repeat Simple_repeat 2 83 0 392 266 55 64 chrY 11325532 11325750 -40187834 + L1MC4 LINE L1 7390 7645 -203 1009 104 104 0 chrY 11325772 11325935 -40187649 - L1PA7 LINE L1 -110 6044 5865 841 96 0 0 chrY 11325935 11326047 -40187537 + L1PA7 LINE L1 6037 6151 -3 2017 95 46 11 chrY 11326053 11326372 -40187212 + AluSp SINE Alu 1 313 0 401 308 57 44 chrY 11326406 11326721 -40186863 + L1MC4 LINE L1 7723 8041 -1 1431 222 3 14 chrY 11327506 11327794 -40185790 + AluJb SINE Alu 1 285 -27 201 74 0 0 chrY 11327794 11327821 -40185763 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 721 249 91 56 chrY 11327845 11327971 -40185613 + L1M1 LINE L1 2796 2916 -4650 2178 74 3 65 chrY 11327971 11328296 -40185288 + AluY SINE Alu 1 305 -6 721 249 91 56 chrY 11328296 11328675 -40184909 + L1M1 LINE L1 2916 3340 -4226 13084 197 111 29 chrY 11328873 11330798 -40182786 + L1M1 LINE L1 22 1788 -5777 1820 174 3 7 chrY 11330798 11331091 -40182493 - AluSg SINE Alu -18 292 1 13084 197 111 29 chrY 11331091 11331656 -40181928 + L1M1 LINE L1 1788 2305 -5260 1911 136 25 3 chrY 11331656 11331942 -40181642 + AluSq SINE Alu 1 292 -21 13084 197 111 29 chrY 11331942 11332060 -40181524 + L1M1 LINE L1 2305 2412 -5153 2044 121 7 10 chrY 11332060 11332357 -40181227 - AluSq SINE Alu -17 296 1 13084 197 111 29 chrY 11332357 11333667 -40179917 + L1M1 LINE L1 2412 4262 -3303 321 289 22 0 chrY 11333752 11333842 -40179742 + L1M1 LINE L1 4288 4379 -3186 3652 69 31 4 chrY 11333843 11334320 -40179264 + LTR2B LTR ERV1 1 490 0 2292 117 30 0 chrY 11334320 11334689 -40178895 + Harlequin LTR ERV1 1 380 -6516 * 4518 66 9 20 chrY 11334684 11335323 -40178261 + Harlequin LTR ERV1 262 893 -6003 * 4978 66 30 2 chrY 11335316 11336269 -40177315 + Harlequin LTR ERV1 1572 2574 -4322 * 12465 111 12 2 chrY 11336268 11338109 -40175475 + Harlequin LTR ERV1 3352 5210 -1686 8972 164 16 19 chrY 11339094 11340799 -40172785 + Harlequin LTR ERV1 5196 6896 0 3413 78 58 0 chrY 11340799 11341261 -40172323 + LTR2B LTR ERV1 1 489 -1 257 280 2 40 chrY 11341301 11341511 -40172073 + L1M1 LINE L1 3801 4003 -3562 189 94 0 0 chrY 11341524 11341556 -40172028 + (A)n Simple_repeat Simple_repeat 1 32 0 2307 199 64 45 chrY 11341570 11342108 -40171476 + L1M1 LINE L1 4403 4929 -2636 1974 157 10 0 chrY 11342108 11342408 -40171176 - AluSq SINE Alu -10 303 1 2307 199 64 45 chrY 11342408 11342429 -40171155 + L1M1 LINE L1 4929 4948 -2617 1736 96 131 4 chrY 11342429 11342689 -40170895 - AluSc SINE Alu -16 293 1 2307 199 64 45 chrY 11342689 11342923 -40170661 + L1M1 LINE L1 4948 5212 -2353 1975 114 74 0 chrY 11342920 11343274 -40170310 + L1PA10 LINE L1 5799 6176 0 * 1388 199 19 16 chrY 11343277 11343599 -40169985 + L1M1 LINE L1 5203 5525 -2040 4694 236 48 42 chrY 11343599 11343712 -40169872 + L1MA9 LINE L1 4606 4717 -2848 2086 128 7 7 chrY 11343712 11344018 -40169566 + AluSg SINE Alu 1 306 -4 4694 236 48 42 chrY 11344018 11344867 -40168717 + L1MA9 LINE L1 4717 5559 -2006 2023 133 7 17 chrY 11344867 11345160 -40168424 - AluSc SINE Alu -19 290 1 4694 236 48 42 chrY 11345160 11346057 -40167527 + L1MA9 LINE L1 5559 6477 -1088 660 251 52 14 chrY 11346072 11346283 -40167301 + L1MA9 LINE L1 7290 7508 -223 1521 220 30 44 chrY 11346285 11346319 -40167265 - MSTB1 LTR MaLR -6 426 393 2149 114 3 7 chrY 11346319 11346627 -40166957 + AluSq SINE Alu 1 307 -6 1521 220 30 44 chrY 11346627 11347024 -40166560 - MSTB1 LTR MaLR -39 393 1 3706 236 113 44 chrY 11347025 11348552 -40165032 - MSTB1-int LTR MaLR -3 1648 34 1010 147 162 5 chrY 11348590 11348794 -40164790 - MSTB1 LTR MaLR 0 432 197 294 188 12 35 chrY 11348797 11348882 -40164702 + L1MA9 LINE L1 7637 7719 -12 282 354 53 24 chrY 11349566 11349703 -40163881 - MIR SINE MIR -20 242 95 189 74 0 0 chrY 11349703 11349730 -40163854 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 282 354 53 24 chrY 11349730 11349801 -40163783 - MIR SINE MIR -167 95 28 2460 97 0 0 chrY 11350016 11350325 -40163259 + AluY SINE Alu 1 309 -2 1677 169 0 60 chrY 11350848 11351179 -40162405 + AluSx SINE Alu 1 311 -1 1804 128 3 74 chrY 11351826 11352138 -40161446 + AluSx SINE Alu 3 292 -20 1889 167 10 0 chrY 11352435 11352734 -40160850 - AluSx SINE Alu -10 302 1 972 220 180 12 chrY 11353988 11354238 -40159346 - AluJb SINE Alu -19 293 2 2856 224 102 30 chrY 11355362 11356471 -40157113 + Cheshire DNA MER1_type 1215 2403 -17 773 159 0 0 chrY 11358243 11358369 -40155215 - AluSg/x SINE Alu -11 301 176 24 85 0 0 chrY 11358776 11358835 -40154749 + AT_rich Low_complexity Low_complexity 1 59 0 1685 253 49 42 chrY 11358893 11359513 -40154071 + L1MB8 LINE L1 4909 5523 -655 1822 173 10 13 chrY 11359513 11359819 -40153765 + AluSx SINE Alu 1 305 -7 1685 253 49 42 chrY 11359819 11359880 -40153704 + L1MB8 LINE L1 5523 5582 -596 1796 189 14 0 chrY 11359880 11360177 -40153407 + AluSx SINE Alu 1 301 -11 1685 253 49 42 chrY 11360177 11360753 -40152831 + L1MB8 LINE L1 5582 6176 -2 2424 87 0 3 chrY 11360852 11361163 -40152421 + AluY SINE Alu 1 310 -1 2370 95 0 0 chrY 11361478 11361782 -40151802 + AluY SINE Alu 1 304 -7 846 278 68 16 chrY 11361800 11362228 -40151356 + L1MB4 LINE L1 3640 4089 -2057 3362 192 64 56 chrY 11362236 11362350 -40151234 + L1PA16 LINE L1 4529 4641 -1525 2172 98 10 10 chrY 11362350 11362646 -40150938 + AluY SINE Alu 1 296 -15 3362 192 64 56 chrY 11362646 11362857 -40150727 + L1PA16 LINE L1 4641 4849 -1317 2697 17 0 0 chrY 11362857 11363154 -40150430 + AluY SINE Alu 1 297 -14 3362 192 64 56 chrY 11363154 11363654 -40149930 + L1PA16 LINE L1 4849 5344 -822 2617 10 0 3 chrY 11363654 11363947 -40149637 + AluY SINE Alu 1 292 -19 3362 192 64 56 chrY 11363947 11364025 -40149559 + L1PA16 LINE L1 5344 5420 -746 1981 123 27 3 chrY 11364025 11364318 -40149266 + AluSp SINE Alu 1 300 -13 3362 192 64 56 chrY 11364318 11364680 -40148904 + L1PA16 LINE L1 5420 5778 -388 4162 104 55 14 chrY 11364680 11365321 -40148263 + PABL_B LTR ERV1 1 667 0 3362 192 64 56 chrY 11365321 11365699 -40147885 + L1PA16 LINE L1 5778 6154 -12 1880 100 4 8 chrY 11365719 11365978 -40147606 + AluY SINE Alu 45 302 -9 1146 272 72 10 chrY 11365981 11366470 -40147114 + L1MB4 LINE L1 4720 5238 -908 296 283 11 0 chrY 11366498 11366600 -40146984 + L1MB4 LINE L1 5525 5627 -547 468 195 163 14 chrY 11366626 11366833 -40146751 + L1MB4 LINE L1 5688 5939 -236 2213 118 3 0 chrY 11366874 11367180 -40146404 + AluSp SINE Alu 5 311 -2 375 149 0 15 chrY 11367229 11367296 -40146288 + MER4A LTR ERV1 33 98 -566 1352 154 20 49 chrY 11367296 11367652 -40145932 + MER4A LTR ERV1 261 664 0 2987 116 143 45 chrY 11367656 11368353 -40145231 + MER4A-int LTR ERV1 2 835 -5763 266 125 0 0 chrY 11368451 11368499 -40145085 + MER4A-int LTR ERV1 839 886 -5712 * 365 150 0 0 chrY 11368497 11368557 -40145027 + MER4A-int LTR ERV1 993 1052 -5546 1906 162 0 0 chrY 11368557 11368847 -40144737 - AluSx SINE Alu -22 290 1 438 122 0 0 chrY 11368847 11368921 -40144663 + MER4A-int LTR ERV1 2420 2493 -4105 1031 167 103 8 chrY 11368924 11369158 -40144426 - LTR8 LTR ERV1 -435 256 1 2615 147 82 98 chrY 11369158 11369422 -40144162 + MER4A-int LTR ERV1 2737 3004 -3594 1997 139 11 0 chrY 11369422 11369768 -40143816 + AluSx SINE Alu 1 349 0 2615 147 82 98 chrY 11369768 11370272 -40143312 + MER4A-int LTR ERV1 3004 3491 -3107 1751 164 22 0 chrY 11370272 11370547 -40143037 + AluSc SINE Alu 1 281 -28 2615 147 82 98 chrY 11370547 11370734 -40142850 + MER4A-int LTR ERV1 3491 3679 -2919 10223 131 85 18 chrY 11370742 11372848 -40140736 + MER4A-int LTR ERV1 3842 6088 -510 649 78 0 0 chrY 11372850 11372940 -40140644 + MER4A-int LTR ERV1 6495 6584 -14 444 158 32 11 chrY 11372959 11373054 -40140530 + MER4A LTR ERV1 1 97 -567 1676 158 9 22 chrY 11373055 11373403 -40140181 + MER4A LTR ERV1 261 662 -2 477 220 45 9 chrY 11373409 11373558 -40140026 + L1MB3 LINE L1 6001 6144 -27 1895 155 7 0 chrY 11373831 11374127 -40139457 - AluSx SINE Alu -14 298 1 2173 126 3 7 chrY 11374660 11374969 -40138615 + AluSx SINE Alu 3 310 -2 321 177 0 0 chrY 11375614 11375676 -40137908 + MER4A-int LTR ERV1 4405 4466 -1120 537 103 35 0 chrY 11375679 11375766 -40137818 + MER4A-int LTR ERV1 6495 6584 -14 459 156 31 10 chrY 11375786 11375882 -40137702 + MER4A LTR ERV1 1 98 -566 673 234 41 18 chrY 11377398 11377569 -40136015 - MER58A DNA MER1_type -12 212 38 23 33 0 0 chrY 11378557 11378587 -40134997 + AT_rich Low_complexity Low_complexity 1 30 0 1905 130 3 0 chrY 11379490 11379818 -40133766 + AluSp SINE Alu 2 330 0 241 242 15 0 chrY 11380151 11380217 -40133367 + CT-rich Low_complexity Low_complexity 4 70 0 23 54 0 0 chrY 11380465 11380502 -40133082 + AT_rich Low_complexity Low_complexity 1 37 0 461 269 0 7 chrY 11381092 11381237 -40132347 + L1MB8 LINE L1 6029 6172 -6 8245 153 92 17 chrY 11381784 11383540 -40130044 + L1P3 LINE L1 14 1885 -4576 * 10995 127 24 7 chrY 11383536 11385300 -40128284 + L1P LINE L1 3379 5182 -964 3244 121 29 26 chrY 11385300 11385846 -40127738 + LTR14 LTR ERVK 1 548 0 10995 127 24 7 chrY 11385846 11386021 -40127563 + L1P LINE L1 5182 5352 -794 6050 89 15 2 chrY 11386021 11386903 -40126681 + L1PA8 LINE L1 5270 6163 -9 654 274 69 19 chrY 11388259 11388722 -40124862 + L1M4 LINE L1 2700 3185 -2961 403 291 89 22 chrY 11388863 11389176 -40124408 + L1M4 LINE L1 3555 3888 -2258 * 801 240 103 6 chrY 11389169 11389498 -40124086 + L1M4 LINE L1 4692 5052 -1094 244 139 70 128 chrY 11389511 11389556 -40124028 - MLT2C1 LTR ERVL -243 154 115 1808 146 0 76 chrY 11389556 11389771 -40123813 - AluSx SINE Alu -9 303 120 2085 134 0 19 chrY 11389771 11390084 -40123500 + AluSx SINE Alu 1 307 -5 1808 146 0 76 chrY 11390084 11390196 -40123388 - AluSx SINE Alu -192 120 1 244 139 70 128 chrY 11390196 11390236 -40123348 - MLT2C1 LTR ERVL -282 115 74 484 225 116 66 chrY 11390320 11390756 -40122828 + LTR15 LTR ERV1 193 596 0 15519 286 41 46 chrY 11390775 11398280 -40115304 + HERV3 LTR ERV1 19 7718 -1017 437 374 0 9 chrY 11398358 11398585 -40114999 + HERV3 LTR ERV1 8202 8426 0 683 235 90 108 chrY 11398676 11398983 -40114601 + LTR30 LTR ERV1 108 368 -125 2095 105 0 14 chrY 11398983 11399278 -40114306 + AluY SINE Alu 1 291 -20 683 235 90 108 chrY 11399278 11399402 -40114182 + LTR30 LTR ERV1 368 493 0 208 320 73 87 chrY 11399574 11399874 -40113710 - L2 LINE L2 -22 3291 2996 310 227 40 13 chrY 11399886 11399961 -40113623 - MER2 DNA MER2_type 0 345 269 568 253 56 25 chrY 11400239 11400401 -40113183 + L1MB5 LINE L1 5854 6020 -154 * 1764 269 53 37 chrY 11400376 11400994 -40112590 + L1MCa LINE L1 130 757 -5669 625 166 7 28 chrY 11401052 11401197 -40112387 + LTR21A LTR ERV1 345 486 -19 554 215 77 48 chrY 11401197 11401406 -40112178 + L1MCa LINE L1 1346 1560 -4866 1488 217 49 23 chrY 11401415 11401760 -40111824 + MLT1A1 LTR MaLR 11 364 -1 311 203 170 4 chrY 11401761 11401894 -40111690 + L1MCa LINE L1 1554 1815 -4611 348 252 65 9 chrY 11401913 11402020 -40111564 + L1MC2 LINE L1 6222 6334 -10 1809 185 96 23 chrY 11402176 11402604 -40110980 + LTR2B LTR ERV1 32 490 0 355 266 13 0 chrY 11402983 11403062 -40110522 - Tigger7 DNA MER2_type 0 2487 2408 1213 203 58 16 chrY 11403075 11403317 -40110267 - Tigger7 DNA MER2_type -466 267 16 9563 166 68 74 chrY 11403368 11403853 -40109731 + Tigger1 DNA MER2_type 1 488 -1930 1663 184 0 7 chrY 11403853 11404152 -40109432 - AluJo SINE Alu -15 297 1 9563 166 68 74 chrY 11404152 11405668 -40107916 + Tigger1 DNA MER2_type 488 1987 -431 1879 138 18 0 chrY 11405668 11405950 -40107634 + AluSx SINE Alu 5 291 -21 9563 166 68 74 chrY 11405950 11406380 -40107204 + Tigger1 DNA MER2_type 1987 2418 0 2191 107 0 0 chrY 11407699 11407998 -40105586 - AluY SINE Alu -12 299 1 1994 130 0 7 chrY 11408065 11408365 -40105219 + AluSc SINE Alu 6 303 -6 351 294 125 33 chrY 11408496 11408680 -40104904 + L1MC4a LINE L1 5697 5897 -1911 260 125 0 0 chrY 11408734 11408782 -40104802 + AluSp/q SINE Alu 255 302 -1 1774 170 7 7 chrY 11408812 11409106 -40104478 + AluSx SINE Alu 1 294 -18 21 36 0 0 chrY 11409628 11409656 -40103928 + AT_rich Low_complexity Low_complexity 1 28 0 34 65 0 0 chrY 11410454 11410516 -40103068 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chrY 11411281 11411309 -40102275 + AT_rich Low_complexity Low_complexity 1 28 0 1281 244 3 10 chrY 11411578 11411881 -40101703 - AluJb SINE Alu -11 301 1 348 327 42 42 chrY 11413788 11413956 -40099628 + MIR3 SINE MIR 41 208 0 2074 124 3 0 chrY 11414454 11414745 -40098839 - AluSg SINE Alu -18 292 1 1325 187 56 4 chrY 11414749 11415016 -40098568 - AluJo SINE Alu -18 294 14 1326 172 135 11 chrY 11415908 11416175 -40097409 - AluSg SINE Alu 0 300 1 215 266 29 54 chrY 11416185 11416282 -40097302 - MIR SINE MIR -129 79 12 21 57 0 0 chrY 11416515 11416550 -40097034 + AT_rich Low_complexity Low_complexity 1 35 0 1326 147 9 0 chrY 11416773 11416984 -40096600 + AluSg/x SINE Alu 97 309 -1 61 46 0 39 chrY 11417089 11417219 -40096365 + AT_rich Low_complexity Low_complexity 1 125 0 2127 115 3 0 chrY 11417409 11417705 -40095879 - AluY SINE Alu -14 297 1 1584 191 0 11 chrY 11418400 11418683 -40094901 - AluSx SINE Alu -28 284 5 24 32 0 0 chrY 11418805 11418836 -40094748 + AT_rich Low_complexity Low_complexity 1 31 0 2183 78 3 19 chrY 11419606 11419913 -40093671 - AluY SINE Alu -9 302 1 1741 151 4 0 chrY 11419916 11420194 -40093390 - AluSx SINE Alu -5 307 29 832 228 147 9 chrY 11420294 11420526 -40093058 + Tigger7 DNA MER2_type 1 264 -469 230 225 112 22 chrY 11420529 11420618 -40092966 + Tigger7 DNA MER2_type 2395 2491 0 27 0 0 0 chrY 11420618 11420645 -40092939 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chrY 11420924 11420949 -40092635 + AT_rich Low_complexity Low_complexity 1 25 0 34 65 0 0 chrY 11421024 11421086 -40092498 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chrY 11421482 11421512 -40092072 + AT_rich Low_complexity Low_complexity 1 30 0 1550 176 3 30 chrY 11422310 11422605 -40090979 + AluJb SINE Alu 1 287 -25 671 230 224 13 chrY 11422624 11422889 -40090695 + L1MB5 LINE L1 3954 4296 -1850 249 119 0 0 chrY 11422889 11422931 -40090653 + (CA)n Simple_repeat Simple_repeat 1 42 0 671 230 224 13 chrY 11422931 11422978 -40090606 + L1MB5 LINE L1 4296 4332 -1814 957 226 25 69 chrY 11422978 11423253 -40090331 + Tigger7 DNA MER2_type 4 266 -284 239 263 40 53 chrY 11423265 11423341 -40090243 + Tigger7 DNA MER2_type 2402 2476 -11 2767 246 95 11 chrY 11423396 11425036 -40088548 + L1MB5 LINE L1 4341 6130 -44 579 244 0 15 chrY 11425050 11425181 -40088403 + AluJo SINE Alu 37 165 -147 407 119 0 0 chrY 11425333 11425392 -40088192 - AluJ/FLAM SINE Alu -207 95 37 871 195 126 0 chrY 11425394 11425625 -40087959 - L1MB4 LINE L1 -39 6141 5882 1710 100 0 4 chrY 11425645 11425874 -40087710 - AluSc SINE Alu -81 228 1 2566 257 110 67 chrY 11426181 11428086 -40085498 - L1MC3 LINE L1 -751 5395 4845 393 351 73 11 chrY 11428087 11428278 -40085306 + L1MDb LINE L1 73 275 -6134 686 247 82 46 chrY 11428362 11428974 -40084610 + L1MDb LINE L1 659 1504 -4902 2021 133 3 0 chrY 11428974 11429276 -40084308 + AluSq SINE Alu 1 303 -10 686 247 82 46 chrY 11429276 11429322 -40084262 + L1MDb LINE L1 1504 1547 -4859 590 254 207 17 chrY 11429325 11429852 -40083732 + L1MDb LINE L1 1662 2288 -4118 24 0 0 0 chrY 11430012 11430036 -40083548 + AT_rich Low_complexity Low_complexity 1 24 0 1939 155 3 0 chrY 11430036 11430326 -40083258 + AluSx SINE Alu 1 291 -21 936 206 41 10 chrY 11430334 11430528 -40083056 - AluSx SINE Alu -108 204 5 410 62 0 31 chrY 11430571 11430636 -40082948 + AluJ/FLAM SINE Alu 1 63 -249 240 299 63 17 chrY 11430688 11430862 -40082722 + L1M4 LINE L1 912 1093 -5449 1769 240 123 33 chrY 11430874 11432800 -40080784 + L1MCa LINE L1 12 2264 -4162 1718 144 49 0 chrY 11432800 11433064 -40080520 + AluSq SINE Alu 3 279 -34 1769 240 123 33 chrY 11433064 11433227 -40080357 + L1MCa LINE L1 2264 2411 -4015 1359 220 70 3 chrY 11433228 11433542 -40080042 + Tigger3(Golem) DNA MER2_type 2 336 -2693 26 0 0 0 chrY 11433547 11433573 -40080011 + AT_rich Low_complexity Low_complexity 1 26 0 395 273 99 47 chrY 11433628 11433869 -40079715 + L1MCa LINE L1 2626 2877 -3549 696 289 12 0 chrY 11433892 11434065 -40079519 + MER8 DNA MER2_type 2 176 -63 522 225 40 72 chrY 11434081 11434303 -40079281 + L1MCa LINE L1 2946 3160 -3266 1895 268 90 24 chrY 11434333 11434562 -40079022 + L1MCa LINE L1 3088 3300 -3126 1787 150 44 0 chrY 11434562 11434856 -40078728 + AluSx SINE Alu 1 307 -5 1861 113 57 3 chrY 11434858 11435140 -40078444 + AluY SINE Alu 1 297 -14 1895 268 90 24 chrY 11435140 11435928 -40077656 + L1MCa LINE L1 3300 4176 -2250 1567 184 0 0 chrY 11435946 11436212 -40077372 + AluSx SINE Alu 23 288 -24 595 243 77 48 chrY 11436223 11436393 -40077191 + L1MCa LINE L1 4437 4601 -1825 1842 153 10 10 chrY 11436393 11436688 -40076896 - AluSp SINE Alu -18 295 1 595 243 77 48 chrY 11436688 11436892 -40076692 + L1MCa LINE L1 4601 4822 -1604 947 259 92 0 chrY 11436999 11437250 -40076334 - AluJo SINE Alu -38 274 1 741 187 0 0 chrY 11437270 11437393 -40076191 - FLAM_C SINE Alu -9 124 2 2822 3 0 0 chrY 11437636 11437943 -40075641 - AluYa5 SINE Alu -4 307 1 1429 146 9 89 chrY 11438233 11438548 -40075036 + AluSx SINE Alu 1 290 -12 30 0 0 0 chrY 11439039 11439069 -40074515 + AT_rich Low_complexity Low_complexity 1 30 0 1994 148 0 0 chrY 11439071 11439369 -40074215 + AluSq SINE Alu 1 298 -15 4742 224 84 30 chrY 11439891 11440228 -40073356 - L1M2 LINE L1 -499 5813 5496 1729 139 92 14 chrY 11440228 11440574 -40073010 + THE1C LTR MaLR 1 373 -2 4742 224 84 30 chrY 11440574 11442195 -40071389 - L1M2 LINE L1 -816 5496 3742 2362 132 11 19 chrY 11442958 11443322 -40070262 + THE1C LTR MaLR 15 375 0 1168 221 37 27 chrY 11443433 11443731 -40069853 + AluJo SINE Alu 1 301 -1 895 86 78 0 chrY 11443878 11444006 -40069578 - MER85 DNA T2_type 0 139 2 1121 235 76 0 chrY 11444404 11444681 -40068903 - AluJo SINE Alu -3 299 2 1252 180 69 59 chrY 11446909 11447198 -40066386 + AluJb SINE Alu 7 298 -14 297 0 0 0 chrY 11447203 11447236 -40066348 + (CA)n Simple_repeat Simple_repeat 2 34 0 1997 127 13 16 chrY 11447447 11447755 -40065829 - AluSx SINE Alu -5 307 1 22 35 0 0 chrY 11448749 11448778 -40064806 + AT_rich Low_complexity Low_complexity 1 29 0 1158 215 106 11 chrY 11449881 11450417 -40063167 + L1MB4 LINE L1 4900 5488 -696 563 209 45 47 chrY 11450488 11450660 -40062924 + L1P4 LINE L1 5655 5827 -341 599 178 0 0 chrY 11450661 11450768 -40062816 + FRAM SINE Alu 62 168 -8 1048 238 102 9 chrY 11450768 11451091 -40062493 + L1MB4 LINE L1 5823 6175 -5 612 225 93 24 chrY 11451265 11451560 -40062024 + MER34B LTR ERV1 1 361 -204 2469 133 141 24 chrY 11451614 11452116 -40061468 + LTR24B LTR ERV1 9 569 -7 240 194 30 15 chrY 11452129 11452196 -40061388 + MER34B LTR ERV1 427 494 -71 225 149 391 35 chrY 11452320 11452407 -40061177 + L1MD2 LINE L1 6191 6308 -51 1030 271 112 6 chrY 11452527 11452885 -40060699 + MSTD LTR MaLR 1 396 0 2129 125 17 0 chrY 11453139 11453436 -40060148 + AluSq SINE Alu 3 304 -9 462 235 0 20 chrY 11454621 11454723 -40058861 - Tigger7 DNA MER2_type 0 2587 2488 828 151 184 110 chrY 11454725 11454842 -40058742 - Tigger7 DNA MER2_type -470 263 156 2135 127 0 0 chrY 11454842 11455133 -40058451 - AluSc SINE Alu -16 293 3 828 151 184 110 chrY 11455133 11455260 -40058324 - Tigger7 DNA MER2_type -577 156 1 762 223 32 0 chrY 11455305 11455462 -40058122 + FAM SINE Alu 1 162 -13 1851 180 74 2 chrY 11456166 11456600 -40056984 + L1MA6 LINE L1 5324 5788 -503 421 225 8 33 chrY 11456690 11456810 -40056774 + MER6 DNA MER2_type 25 862 -3 1832 189 75 31 chrY 11456817 11457268 -40056316 + L1MA6 LINE L1 5830 6300 0 31 0 0 0 chrY 11457268 11457299 -40056285 + AT_rich Low_complexity Low_complexity 1 31 0 270 259 17 9 chrY 11458231 11458347 -40055237 + (TA)n Simple_repeat Simple_repeat 1 117 0 286 205 154 0 chrY 11458347 11458464 -40055120 - L1MA9 LINE L1 -25 6287 6153 233 271 141 0 chrY 11459910 11459995 -40053589 + MLT1L LTR MaLR 450 546 -69 2158 238 32 30 chrY 11461061 11461663 -40051921 + MER77 LTR ERV1 3 605 0 1377 211 0 4 chrY 11463053 11463314 -40050270 - AluJo SINE Alu -32 280 21 415 293 9 48 chrY 11463371 11463600 -40049984 - L1M4 LINE L1 -1180 4966 4747 1851 252 74 95 chrY 11464451 11465546 -40048038 + MER52A LTR ERV1 684 1755 0 2295 164 31 11 chrY 11466591 11467036 -40046548 - Tigger4(Zombi) DNA MER2_type 0 2731 2278 1377 212 55 13 chrY 11467051 11467358 -40046226 + MER7A DNA MER2_type 29 346 0 609 87 0 95 chrY 11467358 11467484 -40046100 - Tigger4(Zombi) DNA MER2_type -462 2269 2156 910 174 0 0 chrY 11467490 11467639 -40045945 - AluSg/x SINE Alu -23 289 141 4875 168 80 6 chrY 11467681 11468627 -40044957 - Tigger4(Zombi) DNA MER2_type -647 2084 1069 3634 183 95 12 chrY 11468623 11469394 -40044190 - Tigger4(Zombi) DNA MER2_type -1892 839 5 * 624 168 7 87 chrY 11469393 11469464 -40044120 - Tigger4(Zombi) DNA MER2_type -1920 811 757 * 5541 52 7 3 chrY 11469464 11470161 -40043423 - L1PA5 LINE L1 -6 6148 5449 624 168 7 87 chrY 11470161 11470238 -40043346 - Tigger4(Zombi) DNA MER2_type -1974 757 675 2978 188 96 3 chrY 11470359 11470993 -40042591 - MER54A LTR ERVL 0 901 209 712 194 65 0 chrY 11470995 11471134 -40042450 - MER47A DNA MER2_type 0 366 219 1089 204 27 5 chrY 11471134 11471354 -40042230 - AluJb SINE Alu -1 311 87 1055 215 14 9 chrY 11471359 11471582 -40042002 - MER47A DNA MER2_type -141 225 2 707 264 35 30 chrY 11471582 11471777 -40041807 - MER54A LTR ERVL -692 209 14 1518 203 45 13 chrY 11471844 11472218 -40041366 + L1P LINE L1 4675 5060 -1086 3265 156 61 75 chrY 11472219 11473459 -40040125 + L1PA14 LINE L1 4927 6144 -17 231 345 22 29 chrY 11474231 11474370 -40039214 + L1MEc LINE L1 266 403 -5993 326 290 179 28 chrY 11474598 11474850 -40038734 + L1MDa LINE L1 137 426 -6114 1929 151 0 0 chrY 11475669 11475978 -40037606 + AluSg SINE Alu 1 309 0 1859 136 28 0 chrY 11475987 11476273 -40037311 + AluY SINE Alu 1 294 -17 400 238 12 0 chrY 11476279 11476363 -40037221 + FLAM_A SINE Alu 48 121 -12 568 207 45 29 chrY 11476480 11476720 -40036864 + L1MC/D LINE L1 5194 5436 -743 309 347 32 23 chrY 11476793 11477009 -40036575 + L1M3b LINE L1 1451 1668 -5828 1725 269 90 26 chrY 11477409 11479367 -40034217 + L1M3b LINE L1 2114 4058 -3507 5719 232 38 6 chrY 11479372 11481068 -40032516 - L1P5 LINE L1 -617 5539 3794 1451 185 120 95 chrY 11481081 11481616 -40031968 + LTR10A LTR ERV1 1 548 -61 2212 227 19 19 chrY 11481628 11482197 -40031387 - L1 LINE L1 -2361 3785 3217 1114 199 30 56 chrY 11482213 11482480 -40031104 + AluJb SINE Alu 12 271 -41 1950 229 73 30 chrY 11482517 11483823 -40029761 + L1M3b LINE L1 4621 6108 -1457 5274 273 59 15 chrY 11483825 11485740 -40027844 + L1M2 LINE L1 899 2898 -3951 1520 173 12 0 chrY 11485760 11486009 -40027575 - AluSx SINE Alu -25 287 36 1922 243 66 18 chrY 11486029 11486769 -40026815 + L1M2 LINE L1 2887 3662 -3186 3844 270 56 60 chrY 11487241 11488511 -40025073 + HERV15 LTR ERV1 26 1125 -7301 333 0 0 0 chrY 11488511 11488548 -40025036 + (CA)n Simple_repeat Simple_repeat 2 38 0 3844 270 56 60 chrY 11488548 11489438 -40024146 + HERV15 LTR ERV1 1125 2017 -6409 * 4006 297 25 30 chrY 11489418 11490770 -40022814 + HERV3 LTR ERV1 3492 4836 -3590 2972 290 39 18 chrY 11490797 11491784 -40021800 + HERV3 LTR ERV1 5165 6171 -2255 201 196 0 0 chrY 11491811 11491857 -40021727 + (TAAG)n Simple_repeat Simple_repeat 1 46 0 4070 296 73 59 chrY 11491858 11492727 -40020857 + HERV3 LTR ERV1 6153 7008 -1418 186 71 0 0 chrY 11492727 11492755 -40020829 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 4070 296 73 59 chrY 11492755 11494064 -40019520 + HERV3 LTR ERV1 7008 8363 -63 202 122 0 61 chrY 11494666 11494715 -40018869 + (TAAAA)n Simple_repeat Simple_repeat 3 48 0 689 248 64 32 chrY 11495164 11495446 -40018138 + L1M2 LINE L1 3584 3874 -2974 680 131 0 0 chrY 11495537 11495636 -40017948 + AluS SINE Alu 1 99 -213 650 184 49 5 chrY 11495648 11495833 -40017751 + L1M2 LINE L1 3951 4143 -2705 816 182 20 5 chrY 11495838 11496041 -40017543 + L1M2 LINE L1 4039 4244 -2604 581 219 58 34 chrY 11496016 11496221 -40017363 + L1PB4 LINE L1 6649 6858 0 * 478 271 109 44 chrY 11496264 11496421 -40017163 + L1M4 LINE L1 2554 2699 -3447 1956 142 7 3 chrY 11496421 11496723 -40016861 + AluSc SINE Alu 3 305 -4 478 271 109 44 chrY 11496723 11496788 -40016796 + L1M4 LINE L1 2699 2758 -3388 342 0 0 0 chrY 11496788 11496826 -40016758 + (TA)n Simple_repeat Simple_repeat 2 39 0 478 271 109 44 chrY 11496826 11497171 -40016413 + L1M4 LINE L1 2758 3159 -2987 1271 248 13 6 chrY 11497174 11497489 -40016095 - L1P LINE L1 -1927 4219 3903 2391 104 42 13 chrY 11497491 11497877 -40015707 + L1PA15 LINE L1 5769 6165 0 507 189 42 0 chrY 11497995 11498090 -40015494 + AluJ/FLAM SINE Alu 1 99 -213 705 56 0 0 chrY 11498095 11498185 -40015399 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 545 283 119 8 chrY 11498217 11498468 -40015116 + L1M4 LINE L1 4519 4797 -1349 1977 94 0 30 chrY 11498508 11498807 -40014777 - L1PA7 LINE L1 0 6154 5865 984 212 65 23 chrY 11498825 11499131 -40014453 + L1MC3 LINE L1 7467 7785 0 753 257 76 9 chrY 11499217 11499427 -40014157 + L1M3a LINE L1 6 229 -5726 823 219 159 39 chrY 11499528 11499997 -40013587 - L1M4 LINE L1 -514 5664 5141 725 236 75 28 chrY 11499990 11500244 -40013340 + L1MB8 LINE L1 5913 6178 0 * 1000 305 94 37 chrY 11501779 11502086 -40011498 + L1M4b LINE L1 103 391 -6468 2111 128 0 0 chrY 11502086 11502384 -40011200 + AluY SINE Alu 1 298 -13 1000 305 94 37 chrY 11502384 11502892 -40010692 + L1M4b LINE L1 391 965 -5894 486 293 177 41 chrY 11502987 11503478 -40010106 + L1MDa LINE L1 169 726 -5814 1666 170 33 14 chrY 11503630 11503906 -40009678 + AluSx SINE Alu 1 281 -31 436 291 59 16 chrY 11504001 11504358 -40009226 + L1MDa LINE L1 1174 1557 -4983 423 259 29 14 chrY 11504426 11504565 -40009019 + L1MB5 LINE L1 285 425 -6424 1491 235 96 25 chrY 11504567 11505416 -40008168 + L1MB5 LINE L1 5378 6299 -583 1045 83 0 0 chrY 11505484 11505616 -40007968 + AluSq/x SINE Alu 2 133 -179 975 164 0 0 chrY 11505635 11505781 -40007803 + AluSp SINE Alu 121 266 -47 960 238 84 20 chrY 11505796 11506140 -40007444 + L1MB5 LINE L1 6354 6719 -157 1842 168 13 0 chrY 11506199 11506503 -40007081 + AluSq SINE Alu 1 308 -5 733 227 91 31 chrY 11506503 11506855 -40006729 + L1MB4 LINE L1 5808 6180 0 1860 229 43 7 chrY 11507145 11507582 -40006002 - MER88 LTR ERVL -11 453 1 432 276 35 58 chrY 11507615 11507872 -40005712 + HAL1 LINE L1 1461 1711 -796 1165 259 24 10 chrY 11507893 11508187 -40005397 + AluJb SINE Alu 1 298 -4 402 232 119 55 chrY 11508712 11509057 -40004527 + L1ME LINE L1 4235 4601 -1545 2122 202 63 13 chrY 11509098 11509652 -40003932 + L1MC3 LINE L1 7138 7719 -66 4098 27 0 0 chrY 11509704 11510312 -40003272 - L1PA4 LINE L1 -398 5757 5150 3239 45 17 0 chrY 11510312 11510713 -40002871 + L1PA4 LINE L1 5742 6152 -3 1566 220 3 0 chrY 11511963 11512259 -40001325 + AluJb SINE Alu 1 297 -15 928 179 127 11 chrY 11512260 11512528 -40001056 + L1MA8 LINE L1 5989 6287 -4 300 161 36 36 chrY 11512689 11512801 -40000783 + GA-rich Low_complexity Low_complexity 3 114 0 324 300 15 54 chrY 11512875 11513005 -40000579 + L1ME LINE L1 5481 5605 -516 1663 122 26 82 chrY 11513174 11513477 -40000107 - AluSx SINE Alu -26 286 1 1664 189 65 21 chrY 11513849 11514386 -39999198 - L1MB5 LINE L1 0 6171 5589 225 94 0 0 chrY 11514386 11514418 -39999166 + (TA)n Simple_repeat Simple_repeat 2 33 0 5169 62 1 1 chrY 11514418 11515074 -39998510 - L1PA5 LINE L1 -9 6145 5490 604 272 88 33 chrY 11515753 11516025 -39997559 - MER82 DNA MER2_type -10 643 357 1879 149 0 55 chrY 11516033 11516342 -39997242 + AluSx SINE Alu 1 292 -20 1970 109 10 33 chrY 11516342 11516644 -39996940 + AluY SINE Alu 1 296 -15 194 136 0 51 chrY 11516647 11516706 -39996878 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 1279 195 3 65 chrY 11516732 11517071 -39996513 - MER82 DNA MER2_type -301 352 35 1250 186 40 90 chrY 11517200 11517554 -39996030 - MER70A LTR ERVL -117 355 20 1183 97 0 0 chrY 11517720 11517885 -39995699 + L1PA11 LINE L1 6009 6173 -1 1940 142 3 3 chrY 11518453 11518742 -39994842 - AluSg SINE Alu -16 294 6 1940 124 19 32 chrY 11519031 11519346 -39994238 + AluSx SINE Alu 2 312 0 2089 130 10 0 chrY 11519534 11519833 -39993751 + AluSx SINE Alu 1 302 -10 2196 84 7 17 chrY 11519937 11520235 -39993349 + AluY SINE Alu 1 295 -16 2196 113 10 0 chrY 11520757 11521048 -39992536 - AluSx SINE Alu -14 298 5 192 97 0 0 chrY 11522199 11522230 -39991354 + (TAA)n Simple_repeat Simple_repeat 1 31 0 322 235 0 0 chrY 11522419 11522487 -39991097 + MER33 DNA MER1_type 17 84 -240 325 254 36 36 chrY 11522744 11522909 -39990675 + L1ME1 LINE L1 5811 5975 -191 1825 126 0 11 chrY 11523108 11523379 -39990205 + AluSc SINE Alu 25 292 -17 253 274 60 60 chrY 11523493 11523694 -39989890 + L1M4b LINE L1 1330 1530 -5329 421 200 59 0 chrY 11523707 11523792 -39989792 + AluJb SINE Alu 207 296 -16 2520 161 39 9 chrY 11523792 11524357 -39989227 + L1PB4 LINE L1 5322 5903 -253 1313 133 0 5 chrY 11524520 11524715 -39988869 + AluSg SINE Alu 1 194 -116 986 154 0 0 chrY 11524722 11524871 -39988713 + AluSg/x SINE Alu 156 304 -6 447 280 59 0 chrY 11525166 11525352 -39988232 + L1M4b LINE L1 2228 2424 -4535 520 197 38 154 chrY 11525449 11525511 -39988073 + L1M4b LINE L1 2669 2737 -4220 1779 140 38 7 chrY 11525511 11525804 -39987780 + AluSq SINE Alu 1 302 -11 520 197 38 154 chrY 11525804 11526235 -39987349 + L1M4b LINE L1 2737 3105 -3852 898 225 0 0 chrY 11526273 11526442 -39987142 - AluJb SINE Alu -143 169 1 2051 141 0 3 chrY 11527288 11527585 -39985999 + AluSq SINE Alu 1 296 -17 22 35 0 0 chrY 11528272 11528301 -39985283 + AT_rich Low_complexity Low_complexity 1 29 0 1111 214 102 20 chrY 11528692 11528996 -39984588 + MSTD LTR MaLR 1 329 -67 182 118 29 0 chrY 11529496 11529530 -39984054 + (TA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chrY 11529963 11529989 -39983595 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chrY 11532214 11532236 -39981348 + (A)n Simple_repeat Simple_repeat 1 22 0 2959 116 116 36 chrY 11532462 11532656 -39980928 - MER4A LTR ERV1 -2 598 421 2274 105 3 0 chrY 11532656 11532961 -39980623 + AluSp SINE Alu 1 306 -7 2959 116 116 36 chrY 11532961 11533320 -39980264 - MER4A LTR ERV1 -179 421 1 226 232 143 0 chrY 11534072 11534128 -39979456 + MIR SINE MIR 49 112 -150 27 0 0 0 chrY 11534421 11534448 -39979136 + AT_rich Low_complexity Low_complexity 1 27 0 6155 102 17 2 chrY 11534581 11535272 -39978312 - L1PA8 LINE L1 -2 6170 5478 2099 85 32 3 chrY 11535272 11535554 -39978030 - AluY SINE Alu -21 290 1 6155 102 17 2 chrY 11535554 11536122 -39977462 - L1PA8 LINE L1 -694 5478 4920 21137 161 15 20 chrY 11536123 11540622 -39972962 - L1M2 LINE L1 -1151 5697 1178 918 215 187 24 chrY 11540646 11541097 -39972487 + LTR61 LTR ERV1 16 595 0 4530 240 24 44 chrY 11541097 11542301 -39971283 - L1M2 LINE L1 -5668 1181 2 814 216 93 0 chrY 11542424 11542628 -39970956 - L1M2 LINE L1 -6242 607 385 29 28 0 0 chrY 11542683 11542719 -39970865 + AT_rich Low_complexity Low_complexity 1 36 0 1941 155 19 7 chrY 11543741 11544050 -39969534 + AluSq SINE Alu 1 313 0 1331 205 13 0 chrY 11544166 11544400 -39969184 + AluJo SINE Alu 1 237 -75 36 23 0 0 chrY 11544402 11544445 -39969139 + AT_rich Low_complexity Low_complexity 1 43 0 1183 177 58 13 chrY 11544619 11544845 -39968739 - AluJo SINE Alu -19 293 58 1108 252 0 0 chrY 11544911 11545149 -39968435 - AluJb SINE Alu -74 238 1 3748 75 21 0 chrY 11545168 11545648 -39967936 - LTR2B LTR ERV1 0 490 1 1291 150 5 0 chrY 11545852 11546065 -39967519 + L1P3 LINE L1 5 218 -6243 3544 120 21 7 chrY 11546066 11546684 -39966900 + L1P LINE L1 2518 3144 -3002 400 176 0 0 chrY 11546688 11546762 -39966822 + L1P LINE L1 4227 4300 -1846 618 298 51 28 chrY 11546814 11547069 -39966515 - MLT2F LTR ERVL -217 446 186 1627 151 0 75 chrY 11547436 11547515 -39966069 + MER41B LTR ERV1 315 398 -237 2381 94 7 0 chrY 11547515 11547823 -39965761 - AluSp SINE Alu -3 310 1 1627 151 0 75 chrY 11547823 11548088 -39965496 + MER41B LTR ERV1 398 633 -2 568 254 0 0 chrY 11548147 11548257 -39965327 - FLAM_A SINE Alu -30 112 3 437 178 0 0 chrY 11548816 11548889 -39964695 - MSTC LTR MaLR -173 255 183 997 153 0 0 chrY 11548895 11549045 -39964539 + AluSg/x SINE Alu 156 305 -7 802 217 33 0 chrY 11549045 11549229 -39964355 - MSTC LTR MaLR -238 190 1 2705 265 85 76 chrY 11549267 11550849 -39962735 - MSTC-int LTR MaLR -25 1710 33 1261 240 149 13 chrY 11550882 11551257 -39962327 - MSTC LTR MaLR 0 428 3 1861 137 14 11 chrY 11551448 11551726 -39961858 + AluSq SINE Alu 2 280 -33 189 0 0 0 chrY 11551726 11551747 -39961837 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 198 103 0 0 chrY 11551807 11551836 -39961748 + (TA)n Simple_repeat Simple_repeat 1 29 0 310 219 0 0 chrY 11551843 11551907 -39961677 - L1MC4 LINE L1 -1339 6703 6640 1909 149 0 3 chrY 11551920 11552209 -39961375 + AluSq SINE Alu 1 288 -25 593 258 127 27 chrY 11552469 11552729 -39960855 + L1M4 LINE L1 3916 4201 -1945 819 205 82 0 chrY 11552741 11552936 -39960648 + L1M2 LINE L1 5351 5561 -730 4621 267 54 22 chrY 11552952 11554445 -39959139 + L1PBa LINE L1 3 1543 -5320 198 350 136 0 chrY 11654669 11654772 -39858812 + L2 LINE L2 3109 3225 -47 2064 119 20 0 chrY 11655013 11655307 -39858277 + AluSc SINE Alu 1 300 -9 945 183 24 0 chrY 11655316 11655485 -39858099 + FAM SINE Alu 1 173 -2 2063 131 6 29 chrY 11656194 11656537 -39857047 - MER1B DNA MER1_type -2 335 1 1731 130 54 11 chrY 11656929 11657206 -39856378 - AluSg SINE Alu -21 289 1 1653 224 57 28 chrY 11657207 11657702 -39855882 - L1M4 LINE L1 -1669 4477 3969 221 83 28 0 chrY 11657702 11657738 -39855846 + (TCCCC)n Simple_repeat Simple_repeat 5 41 0 2521 74 0 6 chrY 11657747 11658059 -39855525 - AluY SINE Alu -1 310 1 1534 153 12 20 chrY 11658087 11658335 -39855249 - AluJo SINE Alu -66 246 1 891 225 71 55 chrY 11658336 11658647 -39854937 - L1M4 LINE L1 -2358 3788 3473 252 0 0 0 chrY 11658690 11658718 -39854866 + (TA)n Simple_repeat Simple_repeat 1 28 0 266 234 40 57 chrY 11658757 11658881 -39854703 - AluSc SINE Alu -29 270 149 309 287 57 51 chrY 11659372 11659570 -39854014 + MIR SINE MIR 2 191 -63 964 202 0 0 chrY 11660122 11660290 -39853294 + AluJb SINE Alu 134 301 -11 2290 72 0 39 chrY 11660820 11661127 -39852457 + AluY SINE Alu 1 295 -16 252 0 0 0 chrY 11662161 11662189 -39851395 + (A)n Simple_repeat Simple_repeat 1 28 0 444 19 0 0 chrY 11662248 11662301 -39851283 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 0 0 0 chrY 11664271 11664293 -39849291 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 604 163 141 22 chrY 11666108 11666243 -39847341 + L1MD2 LINE L1 6207 6357 -2 1548 184 88 0 chrY 11666338 11666658 -39846926 - MER7A DNA MER2_type 0 346 1 1533 176 3 50 chrY 11666937 11667260 -39846324 + AluJb SINE Alu 1 308 -4 1606 93 42 13 chrY 11667733 11667969 -39845615 + AluSq SINE Alu 1 243 -70 184 260 0 0 chrY 11669339 11669389 -39844195 - L2 LINE L2 -6 3266 3217 200 224 104 30 chrY 11669392 11669427 -39844157 + MIR SINE MIR 72 103 -105 2415 75 0 0 chrY 11669427 11669722 -39843862 - AluSc SINE Alu -14 295 1 200 224 104 30 chrY 11669722 11669753 -39843831 + MIR SINE MIR 103 143 -65 851 142 54 14 chrY 11669962 11670110 -39843474 + FRAM SINE Alu 1 154 -22 379 323 145 0 chrY 11670310 11670592 -39842992 + L1MC4a LINE L1 5273 5595 -2213 903 205 0 6 chrY 11670594 11670760 -39842824 + FRAM SINE Alu 1 159 -17 2108 132 0 0 chrY 11670768 11671055 -39842529 + AluSx SINE Alu 1 287 -25 318 267 148 5 chrY 11671133 11671343 -39842241 + L1MC4a LINE L1 5672 5911 -1897 858 123 0 0 chrY 11671378 11671500 -39842084 + L1M2 LINE L1 3 124 -6725 433 326 158 20 chrY 11671646 11671950 -39841634 - L3 LINE CR1 -896 681 336 480 129 439 0 chrY 11674948 11675026 -39838558 + MER3 DNA MER1_type 20 63 -146 2349 101 3 0 chrY 11675026 11675334 -39838250 - AluSq SINE Alu -4 309 1 480 129 439 0 chrY 11675334 11675387 -39838197 + MER3 DNA MER1_type 63 209 0 230 192 19 0 chrY 11675426 11675478 -39838106 + L2 LINE L2 3261 3313 0 351 0 0 0 chrY 11676316 11676355 -39837229 + (A)n Simple_repeat Simple_repeat 1 39 0 281 250 50 25 chrY 11676764 11676844 -39836740 - L2 LINE L2 -38 3234 3153 455 245 122 0 chrY 11677652 11677799 -39835785 - MER104 DNA Tc2 -15 165 1 299 286 15 53 chrY 11677869 11678002 -39835582 - MIR SINE MIR -72 190 63 224 350 79 20 chrY 11678866 11679069 -39834515 + L3b LINE CR1 1117 1331 -252 1797 295 123 25 chrY 11679502 11680547 -39833037 + L2 LINE L2 1587 2734 -580 367 247 89 100 chrY 11680908 11681426 -39832158 + L1MEd LINE L1 686 1197 -4922 2442 41 49 8 chrY 11681484 11681849 -39831735 - L1PA4 LINE L1 0 6155 5776 2388 228 86 30 chrY 11681949 11682077 -39831507 - L2 LINE L2 -838 2476 2357 2195 114 7 7 chrY 11682077 11682383 -39831201 - AluSx SINE Alu -6 306 1 2388 228 86 30 chrY 11682383 11683025 -39830559 - L2 LINE L2 -957 2357 1663 467 221 93 83 chrY 11683093 11683366 -39830218 + MLT1J2 LTR MaLR 85 370 -55 698 142 13 184 chrY 11683366 11683599 -39829985 + 7SK RNA RNA 1 193 0 467 221 93 83 chrY 11683599 11683648 -39829936 + MLT1J2 LTR MaLR 370 417 -8 336 219 124 0 chrY 11683655 11683760 -39829824 - L2 LINE L2 -1648 1666 1549 215 191 21 0 chrY 11683779 11683826 -39829758 + MIR3 SINE MIR 127 174 -34 235 333 111 7 chrY 11687673 11687826 -39825758 + L3b LINE CR1 1276 1444 -139 225 132 0 0 chrY 11687839 11687877 -39825707 + (TG)n Simple_repeat Simple_repeat 1 38 0 541 288 31 31 chrY 11688530 11688752 -39824832 + L3 LINE CR1 1308 1529 -48 1291 194 12 10 chrY 11690117 11690415 -39823169 - L1MB2 LINE L1 -34 6134 5846 465 331 115 13 chrY 11691573 11691887 -39821697 + L2 LINE L2 2967 3312 -1 697 297 84 7 chrY 11691889 11692185 -39821399 + L2 LINE L2 2994 3312 -1 1223 254 56 21 chrY 11692453 11692831 -39820753 - L1MC4 LINE L1 -130 7912 7522 393 219 66 147 chrY 11692890 11693318 -39820266 - L1MC4a LINE L1 -1558 6250 5868 2204 108 3 34 chrY 11693318 11693641 -39819943 + AluSp SINE Alu 1 313 0 393 219 66 147 chrY 11693641 11693724 -39819860 - L1MC4a LINE L1 -1940 5868 5780 1782 171 43 29 chrY 11693831 11694182 -39819402 + MLT1B LTR MaLR 33 388 -2 312 252 114 48 chrY 11695734 11695944 -39817640 - L1ME4a LINE L1 -2 6119 5896 302 265 115 70 chrY 11695993 11696193 -39817391 - L1MC4 LINE L1 -312 7730 7522 1955 138 3 3 chrY 11698479 11698775 -39814809 + AluJb SINE Alu 1 296 -16 2387 53 7 20 chrY 11699115 11699418 -39814166 + AluY SINE Alu 1 299 -12 631 281 157 38 chrY 11700376 11700846 -39812738 - L1ME4a LINE L1 -2028 5780 5255 3560 172 19 61 chrY 11701245 11702014 -39811570 - L1MB7 LINE L1 -19 6165 5429 186 133 0 0 chrY 11702269 11702299 -39811285 + (GA)n Simple_repeat Simple_repeat 1 30 0 197 255 31 93 chrY 11702701 11702855 -39810729 - MIR SINE MIR -76 186 43 34 79 0 0 chrY 11703489 11703565 -39810019 + AT_rich Low_complexity Low_complexity 1 76 0 915 139 0 0 chrY 11703855 11703984 -39809600 + FLAM_C SINE Alu 2 130 -3 1495 196 39 6 chrY 11705979 11706291 -39807293 + MER33 DNA MER1_type 3 324 0 2072 136 3 0 chrY 11706653 11706954 -39806630 + AluSx SINE Alu 1 302 -10 1591 133 39 142 chrY 11706961 11707298 -39806286 + AluJb SINE Alu 1 302 0 1643 214 74 53 chrY 11707453 11707911 -39805673 - MLT1F LTR MaLR -9 533 60 406 283 80 0 chrY 11707973 11708086 -39805498 - MIR SINE MIR -62 146 25 207 69 0 0 chrY 11708969 11708998 -39804586 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 141 7 3 chrY 11709120 11709410 -39804174 + AluSx SINE Alu 1 291 -21 653 249 122 5 chrY 11709416 11709637 -39803947 - MIR SINE MIR -3 259 13 186 43 0 0 chrY 11710213 11710236 -39803348 + (TTG)n Simple_repeat Simple_repeat 2 24 0 459 244 108 131 chrY 11710419 11710507 -39803077 + L2 LINE L2 2926 3015 -257 872 150 0 0 chrY 11710507 11710627 -39802957 + FLAM_C SINE Alu 1 120 -13 459 244 108 131 chrY 11710627 11710882 -39802702 + L2 LINE L2 3015 3261 -11 24 77 0 0 chrY 11711920 11711972 -39801612 + AT_rich Low_complexity Low_complexity 1 52 0 2211 117 7 3 chrY 11712270 11712569 -39801015 - AluSx SINE Alu -12 300 1 1787 148 6 46 chrY 11712919 11713243 -39800341 - AluJb SINE Alu -1 311 1 2530 132 40 2 chrY 11713244 11713639 -39799945 - L1MC1 LINE L1 -10 6323 5914 306 39 58 0 chrY 11714959 11715011 -39798573 + (TA)n Simple_repeat Simple_repeat 2 56 0 234 0 0 0 chrY 11715329 11715355 -39798229 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 818 277 73 108 chrY 11716495 11716707 -39796877 - L1MC1 LINE L1 -831 5315 5097 2131 113 0 0 chrY 11716707 11716998 -39796586 - AluY SINE Alu -20 291 1 818 277 73 108 chrY 11716998 11718906 -39794678 - L1MC1 LINE L1 -1049 5097 3714 269 297 42 42 chrY 11719020 11719350 -39794234 - L1MC1 LINE L1 -2845 3301 2972 1719 152 19 39 chrY 11719503 11719813 -39793771 - AluJb SINE Alu -8 304 1 783 297 14 40 chrY 11720164 11720460 -39793124 - L2 LINE L2 -656 2658 2371 981 162 60 5 chrY 11720512 11720697 -39792887 + MSTD LTR MaLR 1 195 -201 353 134 0 15 chrY 11720787 11720854 -39792730 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 298 206 0 15 chrY 11720854 11720922 -39792662 + MSTD LTR MaLR 391 457 0 568 328 83 28 chrY 11720977 11721303 -39792281 + L2 LINE L2 2914 3257 -15 * 1988 259 109 34 chrY 11721302 11722347 -39791237 - L2 LINE L2 -1 3312 2170 279 239 161 71 chrY 11723560 11723715 -39789869 - L2 LINE L2 0 3272 3104 194 244 160 34 chrY 11723867 11723986 -39789598 + L3 LINE CR1 1218 1351 -226 2039 95 37 0 chrY 11724236 11724536 -39789048 - AluSq SINE Alu 0 310 1 1676 170 0 0 chrY 11725432 11725703 -39787881 - AluJo SINE Alu -1 311 41 22 0 0 0 chrY 11725994 11726016 -39787568 + AT_rich Low_complexity Low_complexity 1 22 0 299 306 109 14 chrY 11726164 11726311 -39787273 + MIR SINE MIR 49 209 -53 722 296 110 44 chrY 11726440 11726758 -39786826 - L2 LINE L2 0 3313 2975 6182 189 62 24 chrY 11726770 11728092 -39785492 + Charlie1a DNA MER1_type 15 1394 -1367 2182 94 0 7 chrY 11728092 11728369 -39785215 - AluSx SINE Alu -17 295 21 6182 189 62 24 chrY 11728369 11728429 -39785155 + Charlie1a DNA MER1_type 1394 1450 -5 245 238 88 88 chrY 11728458 11728639 -39784945 - L1MDa LINE L1 -1687 4528 4348 981 260 113 30 chrY 11728654 11728683 -39784901 - L1MDa LINE L1 -2887 3328 3303 1038 244 23 5 chrY 11728683 11728900 -39784684 + MER58A DNA MER1_type 4 224 0 981 260 113 30 chrY 11728900 11729074 -39784510 - L1MDa LINE L1 -2912 3303 3145 423 62 0 31 chrY 11729074 11729139 -39784445 + L1PA8 LINE L1 6110 6172 0 981 260 113 30 chrY 11729139 11729500 -39784084 - L1MDa LINE L1 -3070 3145 2716 259 283 130 7 chrY 11729637 11729705 -39783879 - L1MDa LINE L1 -3698 2517 2459 2080 132 0 16 chrY 11729705 11729728 -39783856 - AluSx SINE Alu -6 306 284 186 43 0 0 chrY 11729728 11729751 -39783833 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2080 132 0 16 chrY 11729751 11730038 -39783546 - AluSx SINE Alu -28 284 1 259 283 130 7 chrY 11730038 11730107 -39783477 - L1MDa LINE L1 -3756 2459 2363 385 284 54 54 chrY 11730114 11730318 -39783266 - L1MDa LINE L1 -4038 2358 2155 646 289 85 47 chrY 11730495 11730596 -39782988 - L1MDa LINE L1 -4549 1666 1570 1575 207 13 10 chrY 11730596 11730896 -39782688 - AluJo SINE Alu -11 301 1 646 289 85 47 chrY 11730896 11731288 -39782296 - L1MDa LINE L1 -4645 1570 1311 45255 39 1 1 chrY 11731299 11737017 -39776567 + L1P2 LINE L1 2 5716 -439 227 306 0 14 chrY 11736957 11737029 -39776555 - L1P2 LINE L1 -434 5720 5650 * 1788 109 10 33 chrY 11737141 11737444 -39776140 - AluSx SINE Alu -16 296 1 243 293 104 73 chrY 11737994 11738158 -39775426 + L2 LINE L2 3103 3271 -1 246 81 0 0 chrY 11738787 11738824 -39774760 + (T)n Simple_repeat Simple_repeat 1 37 0 210 147 29 0 chrY 11741894 11741928 -39771656 - MIR SINE MIR -6 256 222 877 247 87 4 chrY 11743061 11743292 -39770292 - MIR SINE MIR -5 257 8 902 168 119 5 chrY 11743759 11743944 -39769640 + MLT1D LTR MaLR 1 206 -299 786 173 15 15 chrY 11744205 11744338 -39769246 - FLAM_A SINE Alu 0 133 1 2230 97 10 7 chrY 11744342 11744650 -39768934 - AluSq SINE Alu -4 309 1 418 301 74 81 chrY 11745300 11745522 -39768062 + L2 LINE L2 2855 3074 -198 2513 102 16 38 chrY 11745522 11745894 -39767690 + THE1B LTR MaLR 1 364 0 418 301 74 81 chrY 11745894 11746090 -39767494 + L2 LINE L2 3074 3270 -2 2389 79 3 7 chrY 11748105 11748408 -39765176 + AluSp SINE Alu 2 303 -10 2123 146 0 0 chrY 11748428 11748730 -39764854 - AluSx SINE Alu -10 302 1 711 161 0 9 chrY 11750477 11750589 -39762995 + FLAM_C SINE Alu 21 131 -12 378 283 62 0 chrY 11751747 11751860 -39761724 + L3 LINE CR1 1211 1330 -247 2125 122 3 7 chrY 11752271 11752567 -39761017 + AluSx SINE Alu 1 295 -17 1099 126 45 93 chrY 11752982 11753228 -39760356 - L1MB2 LINE L1 -2 6169 5936 3970 174 18 41 chrY 11753235 11753863 -39759721 - L1MB2 LINE L1 0 6155 5567 1768 188 13 0 chrY 11753863 11754171 -39759413 + AluJb SINE Alu 1 312 0 3970 174 18 41 chrY 11754171 11754708 -39758876 - L1MB2 LINE L1 -588 5567 5019 389 256 101 8 chrY 11757055 11757184 -39756400 + MIR3 SINE MIR 3 143 -65 638 219 26 31 chrY 11757192 11757384 -39756200 - LTR33A LTR ERVL -17 506 316 242 258 116 58 chrY 11757482 11757707 -39755877 - LTR50 LTR ERVL -557 238 1 300 313 15 15 chrY 11758066 11758197 -39755387 - ERVL LTR ERVL -3970 1794 1664 396 0 0 0 chrY 11758305 11758349 -39755235 + (TG)n Simple_repeat Simple_repeat 1 44 0 976 184 46 23 chrY 11758374 11758548 -39755036 + MER45A DNA AcHobo 1 178 0 226 323 71 0 chrY 11758554 11758653 -39754931 - L2 LINE L2 -222 3091 2986 * 267 298 71 90 chrY 11758650 11758905 -39754679 + L2 LINE L2 2963 3212 -60 508 210 7 116 chrY 11758953 11759091 -39754493 - MIR SINE MIR -93 169 47 969 143 0 0 chrY 11759166 11759299 -39754285 + FLAM_C SINE Alu 1 133 0 1576 204 4 11 chrY 11759609 11759889 -39753695 + AluJb SINE Alu 3 280 -32 23 0 0 0 chrY 11759891 11759914 -39753670 + AT_rich Low_complexity Low_complexity 1 23 0 917 153 0 0 chrY 11759917 11760048 -39753536 + FLAM_C SINE Alu 1 131 -2 188 317 49 0 chrY 11761392 11761474 -39752110 - L3 LINE CR1 -505 1072 987 388 300 57 14 chrY 11762217 11762357 -39751227 + MIR SINE MIR 36 181 -81 187 256 23 0 chrY 11762357 11762400 -39751184 + L2 LINE L2 3217 3260 -12 1525 51 22 0 chrY 11762959 11763137 -39750447 + L1PA3 LINE L1 5974 6155 0 231 377 41 25 chrY 11763752 11763874 -39749710 - L2 LINE L2 -13 3259 3136 2091 107 7 7 chrY 11765387 11765677 -39747907 - AluSc SINE Alu -19 290 1 1589 166 13 26 chrY 11765677 11765984 -39747600 - AluJo SINE Alu -9 303 1 3661 238 57 36 chrY 11765987 11767589 -39745995 - L1MEc LINE L1 -2780 3435 1829 5230 236 65 28 chrY 11767590 11768144 -39745440 - L1MEc LINE L1 -4683 1713 1181 1700 157 89 7 chrY 11768144 11768425 -39745159 - AluSx SINE Alu -8 304 1 5230 236 65 28 chrY 11768425 11769489 -39744095 - L1MEc LINE L1 -5215 1181 36 403 339 38 21 chrY 11770279 11770465 -39743119 + MIR3 SINE MIR 17 205 -3 2326 143 82 12 chrY 11771156 11771556 -39742028 + MSTC LTR MaLR 1 428 0 207 125 0 0 chrY 11772194 11772234 -39741350 + (A)n Simple_repeat Simple_repeat 1 40 0 2232 115 0 0 chrY 11773206 11773493 -39740091 + AluSx SINE Alu 1 287 -25 1114 272 42 26 chrY 11773689 11774071 -39739513 + L1ME3A LINE L1 5560 5947 -223 2712 102 58 17 chrY 11774100 11774511 -39739073 + MSTA LTR MaLR 1 428 0 1694 182 60 12 chrY 11774511 11774851 -39738733 + MLT1A1 LTR MaLR 9 365 0 353 279 142 33 chrY 11774862 11775045 -39738539 + L1ME3A LINE L1 5941 6143 -27 255 278 211 0 chrY 11775409 11775499 -39738085 + MIR3 SINE MIR 97 205 -3 249 308 187 39 chrY 11778584 11778766 -39734818 + MIR SINE MIR 53 261 -1 257 284 156 0 chrY 11779420 11779529 -39734055 + MIR SINE MIR 13 138 -124 745 264 16 16 chrY 11779646 11779828 -39733756 + MIR SINE MIR 7 188 -74 247 284 80 11 chrY 11780150 11780238 -39733346 + MIR SINE MIR 56 149 -113 546 284 87 31 chrY 11780278 11780567 -39733017 + L2 LINE L2 2988 3292 -21 19424 31 2 0 chrY 11781313 11784271 -39729313 + L1PA4 LINE L1 3194 6155 0 306 342 25 25 chrY 11786632 11786790 -39726794 - MIR3 SINE MIR -18 190 33 433 264 40 30 chrY 11787373 11787574 -39726010 - L1MC4 LINE L1 -4 8038 7836 924 226 54 21 chrY 11787622 11787901 -39725683 - L1ME2 LINE L1 -10 6154 5867 2445 148 38 49 chrY 11788569 11789041 -39724543 + MLT1C LTR MaLR 1 467 0 1086 231 87 13 chrY 11789085 11789396 -39724188 - L1ME3A LINE L1 -17 6153 5820 2002 122 11 11 chrY 11789662 11789949 -39723635 + AluSg SINE Alu 3 289 -21 2127 127 3 0 chrY 11789979 11790279 -39723305 - AluSx SINE Alu -11 301 1 998 184 87 0 chrY 11790281 11790488 -39723096 + L1ME1 LINE L1 4475 4699 -1447 824 193 17 28 chrY 11790531 11790641 -39722943 + AluJb SINE Alu 1 111 -201 432 37 0 0 chrY 11790641 11790695 -39722889 + (CA)n Simple_repeat Simple_repeat 1 54 0 2069 104 4 0 chrY 11790697 11790966 -39722618 - AluSg SINE Alu -19 291 22 824 193 17 28 chrY 11790966 11791028 -39722556 + AluJb SINE Alu 112 174 -138 232 179 179 45 chrY 11791028 11791114 -39722470 + AluJ/FRAM SINE Alu 222 302 0 3748 201 63 14 chrY 11791217 11792538 -39721046 + L1ME1 LINE L1 4786 6334 0 2250 113 0 3 chrY 11792663 11792965 -39720619 + AluSq SINE Alu 1 301 -12 300 27 0 0 chrY 11793732 11793769 -39719815 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 319 333 49 10 chrY 11794827 11794929 -39718655 - MER91C DNA MER1_type -2 138 33 338 272 9 44 chrY 11795022 11795136 -39718448 - MER102a DNA MER1_type 0 330 221 864 146 0 0 chrY 11795162 11795285 -39718299 + FLAM_A SINE Alu 1 123 -10 1927 104 0 4 chrY 11795292 11795543 -39718041 + AluSg SINE Alu 39 288 -22 26 0 0 0 chrY 11795543 11795569 -39718015 + AT_rich Low_complexity Low_complexity 1 26 0 1781 178 0 7 chrY 11795710 11796013 -39717571 + AluJo SINE Alu 1 301 -11 466 187 0 0 chrY 11796391 11796466 -39717118 - FLAM SINE Alu -21 122 48 275 242 108 33 chrY 11798437 11798557 -39715027 + L3b LINE CR1 1368 1496 -87 195 280 0 0 chrY 11798948 11798998 -39714586 + MIR SINE MIR 83 132 -76 792 272 246 14 chrY 11799005 11799483 -39714101 - L2 LINE L2 0 3313 2737 332 215 0 0 chrY 11802550 11802615 -39710969 + MLT1H LTR MaLR 263 327 -222 819 214 114 15 chrY 11802641 11802842 -39710742 - MER58A DNA MER1_type -2 222 2 523 134 31 118 chrY 11802859 11802986 -39710598 + MLT1H LTR MaLR 431 546 -3 335 354 82 6 chrY 11803252 11803410 -39710174 + L2 LINE L2 3103 3272 0 196 350 45 23 chrY 11804395 11804572 -39709012 - L2 LINE L2 -264 3008 2828 181 318 34 45 chrY 11804901 11804989 -39708595 - L2 LINE L2 0 3272 3186 240 257 54 68 chrY 11805072 11805146 -39708438 + L2 LINE L2 3191 3263 -9 471 242 0 0 chrY 11805149 11805240 -39708344 - L2 LINE L2 0 3313 3223 217 283 71 26 chrY 11805485 11805598 -39707986 - L2 LINE L2 -4 3309 3192 180 209 15 60 chrY 11806007 11806074 -39707510 - L2 LINE L2 -3140 174 111 223 241 17 0 chrY 11806199 11806257 -39707327 + CT-rich Low_complexity Low_complexity 2 60 0 220 150 25 88 chrY 11806997 11807077 -39706507 + GA-rich Low_complexity Low_complexity 3 77 0 233 274 53 62 chrY 11807251 11807364 -39706220 - MIR SINE MIR -32 230 119 705 306 128 20 chrY 11807792 11808191 -39705393 - L3 LINE CR1 -32 1545 1104 813 197 11 44 chrY 11808192 11808375 -39705209 - FRAM SINE Alu 0 176 1 379 322 91 7 chrY 11808376 11808519 -39705065 - L3 LINE CR1 -466 1111 957 308 304 78 37 chrY 11808583 11808774 -39704810 - L2 LINE L2 -165 3107 2909 2370 121 74 2 chrY 11808879 11809283 -39704301 - Tigger2 DNA MER2_type -5 2713 2281 433 127 0 0 chrY 11809290 11809353 -39704231 - Tigger2 DNA MER2_type -2655 63 1 389 232 81 85 chrY 11815886 11816097 -39697487 - MIR SINE MIR -52 210 1 375 191 51 51 chrY 11819809 11819966 -39693618 + L1ME4a LINE L1 5965 6121 0 3296 137 21 21 chrY 11823039 11823643 -39689941 - L1MB3 LINE L1 -7 6176 5573 409 193 18 28 chrY 11823652 11823761 -39689823 - L1MC2 LINE L1 0 6344 6237 188 333 0 0 chrY 11823985 11824042 -39689542 - MIR3 SINE MIR -16 192 136 2601 89 31 31 chrY 11824964 11825378 -39688206 - L1MA1 LINE L1 0 6302 5889 1037 183 16 0 chrY 11825828 11826014 -39687570 + MER5A DNA MER1_type 1 189 0 340 200 93 50 chrY 11826825 11826950 -39686634 - L1ME4a LINE L1 -2 6119 5986 871 221 80 55 chrY 11826950 11827276 -39686308 - MER46C DNA MER2_type -2 336 3 340 200 93 50 chrY 11827276 11827290 -39686294 - L1ME4a LINE L1 -135 5986 5974 506 277 118 33 chrY 11827353 11827682 -39685902 - L1ME4a LINE L1 -252 5869 5513 183 219 141 16 chrY 11827790 11827854 -39685730 + L3b LINE CR1 1271 1342 -241 35 0 0 0 chrY 11829504 11829539 -39684045 + AT_rich Low_complexity Low_complexity 1 35 0 414 280 227 0 chrY 11829936 11830068 -39683516 + MIR3 SINE MIR 16 177 -31 1012 189 35 0 chrY 11830640 11830841 -39682743 + MER3 DNA MER1_type 2 209 0 241 308 29 39 chrY 11830918 11831022 -39682562 - L2 LINE L2 -6 3266 3164 10330 225 46 31 chrY 11931510 11933522 -39580062 + L1PB2 LINE L1 1 1982 -4226 2194 111 0 10 chrY 11933522 11933828 -39579756 - AluY SINE Alu -6 305 3 10330 225 46 31 chrY 11933828 11938191 -39575393 + L1PB2 LINE L1 1982 6206 -2 1959 179 114 65 chrY 11938755 11939089 -39574495 + L1MA8 LINE L1 5596 5912 -379 1831 136 3 65 chrY 11939089 11939222 -39574362 + AluSx SINE Alu 3 143 -169 2124 105 3 33 chrY 11939222 11939527 -39574057 + AluSg SINE Alu 1 296 -14 1831 136 3 65 chrY 11939527 11939701 -39573883 + AluSx SINE Alu 143 291 -21 1959 179 114 65 chrY 11939701 11940026 -39573558 + L1MA8 LINE L1 5912 6287 -4 24 41 0 20 chrY 11940063 11940090 -39573494 + AT_rich Low_complexity Low_complexity 1 28 -20 1971 134 3 10 chrY 11940090 11940382 -39573202 - AluSc SINE Alu -19 290 1 24 41 0 20 chrY 11940382 11940403 -39573181 + AT_rich Low_complexity Low_complexity 28 48 0 1071 265 67 2 chrY 11940454 11940899 -39572685 + L1M4 LINE L1 3897 4370 -1776 1837 244 63 120 chrY 11940918 11942387 -39571197 + L1M3e LINE L1 460 1844 -5645 775 277 156 16 chrY 11942383 11943068 -39570516 + L1M3e LINE L1 2894 3674 -3891 * 278 175 62 25 chrY 11943117 11943197 -39570387 - MER65A LTR ERV1 -83 362 280 279 0 0 0 chrY 11943201 11943232 -39570352 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 21276 62 9 4 chrY 11943232 11946831 -39566753 - L1PA5 LINE L1 -12 6142 2530 15108 129 8 4 chrY 11946832 11949223 -39564361 - L1PA5 LINE L1 -3736 2410 11 1184 206 21 18 chrY 11949231 11949517 -39564067 - MER65A LTR ERV1 -158 287 1 1690 267 42 2 chrY 11949519 11950118 -39563466 + L1M3e LINE L1 3679 4301 -3264 227 138 73 55 chrY 11950138 11950247 -39563337 + L1M3e LINE L1 4579 4689 -2876 761 311 60 8 chrY 11950254 11950624 -39562960 + L1PA12 LINE L1 2 390 -7191 225 350 10 10 chrY 11951368 11951471 -39562113 + L1M2 LINE L1 964 1066 -5783 2337 163 29 23 chrY 11952111 11952812 -39560772 + L1PA12 LINE L1 2131 2984 -4600 39891 43 22 3 chrY 11952812 11958852 -39554732 + L1PA3 LINE L1 4 6155 0 2203 202 82 12 chrY 11958906 11959500 -39554084 + L1PA12 LINE L1 2960 3595 -3989 307 125 156 0 chrY 11959535 11959599 -39553985 + THE1-int LTR MaLR 489 562 -1018 31 26 0 0 chrY 11959613 11959651 -39553933 + AT_rich Low_complexity Low_complexity 1 38 0 26985 130 17 57 chrY 11959664 11966060 -39547524 - L1PA7 LINE L1 -13 6141 12 1741 258 73 34 chrY 11966076 11966703 -39546881 + L1PA12 LINE L1 3569 4239 -3345 2443 128 8 13 chrY 11966703 11967077 -39546507 - THE1C LTR MaLR 0 375 4 1741 258 73 34 chrY 11967077 11967285 -39546299 + L1PA12 LINE L1 4239 4437 -3147 1525 131 25 29 chrY 11967375 11967650 -39545934 + THE1C LTR MaLR 81 354 -21 2815 255 174 7 chrY 11967672 11968520 -39545064 + L1PA13 LINE L1 58 1047 -5740 5225 206 23 16 chrY 11968522 11969624 -39543960 + L1PA13 LINE L1 1085 2193 -4594 1933 122 0 0 chrY 11969635 11969890 -39543694 - AluSg SINE Alu -55 255 1 11220 233 19 33 chrY 11969895 11970335 -39543249 + L1PA13 LINE L1 2484 2929 -3868 225 0 0 0 chrY 11970335 11970360 -39543224 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3539 22 5 0 chrY 11970360 11970773 -39542811 - L1PA3 LINE L1 -18 6137 5723 11220 233 19 33 chrY 11970773 11972778 -39540806 + L1PA13 LINE L1 2928 4867 -1930 3722 151 23 97 chrY 11972778 11973635 -39539949 - LTR25 LTR ERV1 0 794 1 11220 233 19 33 chrY 11973635 11974629 -39538955 + L1PA13 LINE L1 4867 5874 -923 1867 168 3 0 chrY 11974669 11974955 -39538629 + AluSx SINE Alu 1 287 -25 213 39 0 0 chrY 11974956 11974982 -39538602 + (TA)n Simple_repeat Simple_repeat 1 26 0 362 255 0 21 chrY 11975021 11975115 -39538469 - L1MC4 LINE L1 -1339 6703 6612 302 153 17 0 chrY 11975115 11975174 -39538410 + (TA)n Simple_repeat Simple_repeat 1 60 0 256 59 0 0 chrY 11975174 11975208 -39538376 + (CA)n Simple_repeat Simple_repeat 1 34 0 2104 255 55 49 chrY 11975285 11976314 -39537270 - L1M4 LINE L1 -1197 4949 3914 634 178 15 44 chrY 11976722 11976857 -39536727 + FLAM_C SINE Alu 2 132 -1 1987 159 0 0 chrY 11977117 11977406 -39536178 - AluSc SINE Alu -20 289 1 1949 163 0 0 chrY 11977780 11978080 -39535504 + AluSg SINE Alu 1 300 -10 806 262 93 54 chrY 11978183 11978592 -39534992 + MLT1D LTR MaLR 81 505 0 3951 174 39 8 chrY 11978594 11980102 -39533482 - L1M1 LINE L1 -507 5797 2989 3578 184 35 57 chrY 11980102 11980716 -39532868 + LTR25 LTR ERV1 1 595 -199 1963 130 0 14 chrY 11980716 11981030 -39532554 + AluSc SINE Alu 1 310 0 3578 184 35 57 chrY 11981030 11981226 -39532358 + LTR25 LTR ERV1 595 794 0 315 154 77 0 chrY 11981226 11981291 -39532293 + LTR25-int LTR ERV1 13 82 -6914 595 230 24 85 chrY 11981621 11981869 -39531715 + LTR12 LTR ERV1 231 463 -251 19821 189 41 54 chrY 11981890 11982537 -39531047 + LTR25-int LTR ERV1 268 922 -6074 1898 151 0 7 chrY 11982537 11982857 -39530727 - AluY SINE Alu 0 311 3 19821 189 41 54 chrY 11982857 11986591 -39526993 + LTR25-int LTR ERV1 922 4535 -2461 2347 92 0 13 chrY 11986591 11986896 -39526688 + AluY SINE Alu 1 301 -10 19821 189 41 54 chrY 11986896 11988062 -39525522 + LTR25-int LTR ERV1 4535 5715 -1281 40158 38 23 1 chrY 11988066 11994086 -39519498 - L1PA2 LINE L1 0 6155 4 5265 176 13 37 chrY 11994086 11994138 -39519446 + LTR25-int LTR ERV1 2934 2986 -4010 2106 138 0 3 chrY 11994138 11994435 -39519149 + AluSg SINE Alu 1 296 -14 5265 176 13 37 chrY 11994435 11995711 -39517873 + LTR25-int LTR ERV1 2986 6946 -50 3583 173 29 51 chrY 11995712 11996481 -39517103 + LTR25 LTR ERV1 20 771 -23 2156 255 37 4 chrY 11996481 11997191 -39516393 - L1M1 LINE L1 -3190 2956 2224 3459 221 43 10 chrY 11997284 11999015 -39514569 - L1PA16 LINE L1 0 6166 4376 682 194 59 6 chrY 11999016 11999186 -39514398 - L1PA13 LINE L1 -18 6145 5967 886 200 54 0 chrY 11999187 11999503 -39514081 + L1P4 LINE L1 5156 5483 -682 3144 105 58 14 chrY 11999506 11999992 -39513592 + L1PA10 LINE L1 2 508 -5638 8314 183 33 26 chrY 12000005 12000254 -39513330 + L1PA10 LINE L1 1970 2216 -3930 2847 16 0 0 chrY 12000254 12000566 -39513018 + AluYb8 SINE Alu 1 312 -6 8314 183 33 26 chrY 12000566 12001590 -39511994 + L1PA10 LINE L1 2216 3231 -2915 201 39 0 0 chrY 12001590 12001616 -39511968 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 8314 183 33 26 chrY 12001616 12002055 -39511529 + L1PA10 LINE L1 3231 3701 -2445 390 57 0 0 chrY 12002055 12002108 -39511476 + (CAA)n Simple_repeat Simple_repeat 3 55 0 8314 183 33 26 chrY 12002108 12002348 -39511236 + L1PA10 LINE L1 3701 3938 -2208 4180 79 8 36 chrY 12002353 12002970 -39510614 + L1PA7 LINE L1 5542 6141 -13 5211 133 50 7 chrY 12002975 12003991 -39509593 + L1PA10 LINE L1 5122 6164 -4 1103 241 18 3 chrY 12004048 12004376 -39509208 + L1PB3 LINE L1 5005 5337 -809 * 5136 137 9 17 chrY 12004363 12005107 -39508477 + L1PA8 LINE L1 4928 5666 -506 450 32 0 32 chrY 12005107 12005169 -39508415 + L1PA4 LINE L1 6088 6147 -8 5136 137 9 17 chrY 12005169 12005642 -39507942 + L1PA8 LINE L1 5666 6141 -31 192 40 0 0 chrY 12005645 12005670 -39507914 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 459 129 0 12 chrY 12005692 12005777 -39507807 + L1PA8A LINE L1 5750 5833 -298 2469 134 35 5 chrY 12005786 12006190 -39507394 + L1PA10 LINE L1 5742 6157 -11 1457 132 40 52 chrY 12006208 12006534 -39507050 + L1PB3 LINE L1 5319 5640 -514 1674 160 102 140 chrY 12006534 12007084 -39506500 + MER1A DNA MER1_type 1 529 0 2578 156 38 22 chrY 12007089 12007588 -39505996 + L1PB3 LINE L1 5645 6151 -3 21 36 0 0 chrY 12007588 12007616 -39505968 + AT_rich Low_complexity Low_complexity 1 28 0 605 249 61 0 chrY 12007632 12007797 -39505787 + MLT2D LTR ERVL 180 354 -60 1754 279 26 11 chrY 12008159 12009041 -39504543 + ERVL-D LTR ERVL 285 1297 -4467 * 2939 243 82 32 chrY 12009039 12010052 -39503532 - ERVL LTR ERVL -2582 3182 2119 * 4722 235 60 12 chrY 12010048 12011254 -39502330 + ERVL LTR ERVL 3322 4586 -1178 585 250 69 0 chrY 12011585 12011745 -39501839 - MER77 LTR ERV1 -8 597 427 1624 237 8 9 chrY 12011752 12012276 -39501308 - LTR69 LTR ERVL 0 588 4 54 84 0 0 chrY 12012664 12012795 -39500789 + AT_rich Low_complexity Low_complexity 1 131 0 2114 191 18 18 chrY 12013260 12013709 -39499875 + L1PA16 LINE L1 5709 6157 -9 2087 98 4 0 chrY 12013739 12014040 -39499544 + AluY SINE Alu 17 318 0 329 138 0 0 chrY 12014093 12014151 -39499433 - LTR69 LTR ERVL -338 250 193 1411 241 10 10 chrY 12014498 12014896 -39498688 + L1PA13 LINE L1 2165 2562 -3584 9717 197 29 22 chrY 12014898 12015671 -39497913 + L1PA13 LINE L1 2871 3637 -2526 441 0 0 0 chrY 12015671 12015720 -39497864 + (CA)n Simple_repeat Simple_repeat 2 50 0 9717 197 29 22 chrY 12015720 12018192 -39495392 + L1PA13 LINE L1 3637 6162 -1 711 226 12 24 chrY 12018482 12018650 -39494934 - AluSg/x SINE Alu -8 304 139 21 57 0 0 chrY 12019084 12019119 -39494465 + AT_rich Low_complexity Low_complexity 1 35 0 1613 159 30 15 chrY 12019193 12019457 -39494127 + AluSx SINE Alu 21 288 -24 398 295 57 19 chrY 12019485 12019695 -39493889 + L1ME3A LINE L1 5690 5907 -263 870 242 90 20 chrY 12019700 12020124 -39493460 - MLT2B1 LTR ERVL -8 512 1 292 161 54 0 chrY 12020183 12020239 -39493345 + L1ME3A LINE L1 5955 6013 -157 349 227 21 21 chrY 12020254 12020351 -39493233 + L1ME3A LINE L1 6065 6161 -9 348 242 81 12 chrY 12020485 12020640 -39492944 + MER41B LTR ERV1 142 350 -242 270 238 12 36 chrY 12020862 12020946 -39492638 + MER66-int LTR ERV1 185 266 -6410 417 326 27 32 chrY 12020951 12021138 -39492446 + MER66-int LTR ERV1 400 585 -6091 6078 208 41 32 chrY 12021892 12023346 -39490238 + MER66-int LTR ERV1 1253 2718 -3958 1553 229 38 83 chrY 12023347 12023927 -39489657 - MLT2B3 LTR ERVL 0 554 1 5125 178 5 6 chrY 12023927 12024865 -39488719 - HERVL-B3 LTR ERVL 0 5654 4718 10800 172 32 30 chrY 12024877 12027091 -39486493 - HERVL LTR ERVL -3434 2220 2 584 214 55 62 chrY 12027092 12027276 -39486308 - MLT2A2 LTR ERVL 0 453 293 5734 215 113 30 chrY 12027299 12028724 -39484860 + MSTA-int LTR MaLR 1 1563 -88 1483 223 0 7 chrY 12028724 12029007 -39484577 + AluJb SINE Alu 1 281 -31 5734 215 113 30 chrY 12029007 12029105 -39484479 + MSTA-int LTR MaLR 1563 1651 0 881 245 95 11 chrY 12029118 12029580 -39484004 - LTR2 LTR ERV1 -2 488 3 1970 186 35 2 chrY 12029582 12029986 -39483598 + MSTA LTR MaLR 8 424 -4 247 250 0 0 chrY 12029989 12030069 -39483515 + L1 LINE L1 4303 4382 -1764 * 2032 170 4 58 chrY 12030066 12030518 -39483066 - L1PA13 LINE L1 -197 5966 5539 383 173 0 13 chrY 12030624 12030699 -39482885 + LTR25 LTR ERV1 220 293 -501 932 205 9 47 chrY 12030722 12030937 -39482647 + LTR25 LTR ERV1 244 450 -344 3074 90 2 2 chrY 12030985 12031409 -39482175 - MER11D LTR ERVK -473 424 1 1125 211 65 4 chrY 12031409 12031669 -39481915 - HERVL-B3 LTR ERVL -4152 1502 1227 * 4094 216 19 3 chrY 12031661 12032575 -39481009 - HERVL-B3 LTR ERVL -4726 928 1 1373 245 68 84 chrY 12032575 12033134 -39480450 - MLT2B3 LTR ERVL 0 554 5 1284 344 18 19 chrY 12033342 12033959 -39479625 + L1PBa LINE L1 1053 1668 -5181 1872 132 44 0 chrY 12033961 12034301 -39479283 - L1PA8 LINE L1 -743 5403 5049 4862 111 5 40 chrY 12034301 12035076 -39478508 + L1PA8 LINE L1 5416 6164 -8 1477 221 47 27 chrY 12035084 12035676 -39477908 + L1PBa LINE L1 1664 2267 -4582 2299 200 11 0 chrY 12035686 12036141 -39477443 - L1P3 LINE L1 -5530 931 472 2577 170 22 9 chrY 12036141 12036593 -39476991 + LTR22A LTR ERVK 1 458 0 5265 179 22 11 chrY 12036593 12037564 -39476020 + HERVK22 LTR ERVK 1 981 -5856 * 18192 143 25 2 chrY 12037556 12040576 -39473008 + HERVK22 LTR ERVK 2248 5335 -1502 1047 181 0 0 chrY 12040569 12040751 -39472833 + HERVK22 LTR ERVK 6656 6837 0 * 2608 163 11 17 chrY 12040751 12041212 -39472372 + LTR22A LTR ERVK 1 458 0 761 166 22 17 chrY 12041226 12041407 -39472177 + L1PBa LINE L1 2764 2945 -3904 2838 125 56 113 chrY 12041409 12042049 -39471535 - LTR14B LTR ERVK 0 608 5 2290 310 55 39 chrY 12042058 12043793 -39469791 - HERVK14C LTR ERVK -40 7377 5616 20272 112 4 8 chrY 12043836 12046886 -39466698 - HERVK14C LTR ERVK -800 5145 2107 3339 128 0 0 chrY 12046887 12047409 -39466175 - HERVK14C LTR ERVK -4360 1585 1064 6870 58 7 9 chrY 12047425 12048487 -39465097 + L1PA4 LINE L1 5094 6154 -1 1997 152 48 25 chrY 12048827 12049183 -39464401 - THE1B LTR MaLR 0 364 1 8348 129 20 111 chrY 12049183 12050341 -39463243 - THE1B-int LTR MaLR 0 1580 319 1994 141 0 0 chrY 12050341 12050648 -39462936 + AluY SINE Alu 1 307 0 1145 144 40 0 chrY 12050648 12050821 -39462763 + AluSg/x SINE Alu 131 310 -2 8348 129 20 111 chrY 12050821 12051225 -39462359 - THE1B-int LTR MaLR -1259 321 1 1543 168 100 29 chrY 12051225 12051565 -39462019 - THE1B LTR MaLR 0 364 1 539 199 80 80 chrY 12051837 12052123 -39461461 - LTR23-int LTR ERV1 -4425 698 413 5563 64 4 1 chrY 12052156 12052874 -39460710 - L1PA5 LINE L1 0 6154 5435 2558 161 32 32 chrY 12053031 12053559 -39460025 + MER4D LTR ERV1 95 622 -250 8302 160 24 3 chrY 12053563 12055073 -39458511 + MER4B-int LTR ERV1 4659 6200 -558 948 177 0 6 chrY 12055078 12055242 -39458342 + MER4B-int LTR ERV1 6596 6758 0 2243 164 69 70 chrY 12055242 12055440 -39458144 + MER4B LTR ERV1 1 198 -581 1372 256 3 0 chrY 12055440 12055748 -39457836 + AluJb SINE Alu 1 309 -3 2243 164 69 70 chrY 12055748 12056146 -39457438 + MER4B LTR ERV1 198 770 -9 4519 131 136 0 chrY 12056157 12056884 -39456700 + LTR12 LTR ERV1 1 826 0 890 184 75 18 chrY 12056890 12057156 -39456428 + LTR12 LTR ERV1 142 714 0 * 22676 114 12 6 chrY 12057156 12060621 -39452963 + HERV9 LTR ERV1 80 3566 -4833 516 132 0 0 chrY 12060598 12060674 -39452910 + HERV9 LTR ERV1 1584 1659 -6740 * 34020 105 8 16 chrY 12060681 12065568 -39448016 + HERV9 LTR ERV1 3553 8399 0 5049 104 121 8 chrY 12065568 12066310 -39447274 + LTR12 LTR ERV1 1 826 0 738 106 3 0 chrY 12066310 12066417 -39447167 + LTR12 LTR ERV1 73 710 -4 1756 102 3 89 chrY 12067242 12067535 -39446049 - AluY SINE Alu -18 293 26 816 65 0 0 chrY 12069522 12069629 -39443955 + (TTC)n Simple_repeat Simple_repeat 3 109 0 1643 190 10 26 chrY 12070092 12070397 -39443187 - AluJb SINE Alu -10 302 3 388 149 103 0 chrY 12070696 12070783 -39442801 - L1 LINE L1 -1204 4942 4847 * 5159 239 126 19 chrY 12070775 12071282 -39442302 + L1 LINE L1 1 452 -7113 1751 179 0 0 chrY 12071282 12071585 -39441999 + AluSg SINE Alu 1 303 0 5159 239 126 19 chrY 12071585 12072625 -39440959 + L1 LINE L1 452 2403 -5162 583 261 13 26 chrY 12072628 12072781 -39440803 + L1PA12 LINE L1 80 230 -7351 397 291 6 113 chrY 12072807 12073010 -39440574 + L1PA12 LINE L1 610 2022 -4976 1566 149 75 0 chrY 12073014 12073294 -39440290 - AluSq SINE Alu 0 313 23 1825 217 10 5 chrY 12073330 12073722 -39439862 + L1PA12 LINE L1 3201 3594 -3990 27550 128 14 32 chrY 12075261 12081204 -39432380 - L1PA7 LINE L1 -5 6464 601 1226 174 0 14 chrY 12081204 12081417 -39432167 - AluSg SINE Alu -100 210 1 3442 280 53 32 chrY 12081835 12083101 -39430483 - HERVL32 LTR ERVL -2125 1293 1 1376 209 76 21 chrY 12083113 12083443 -39430141 - LTR32 LTR ERVL -11 460 113 535 264 10 15 chrY 12083568 12083765 -39429819 + L1 LINE L1 4366 4561 -3004 3459 137 13 16 chrY 12083765 12084313 -39429271 + MER41A LTR ERV1 1 546 -8 2497 188 21 13 chrY 12084321 12084799 -39428785 + MER41A-int LTR ERV1 1 482 -5464 * 4369 116 39 78 chrY 12084797 12085639 -39427945 - MER4B-int LTR ERV1 -1391 5367 4559 572 156 62 0 chrY 12085640 12085736 -39427848 - LTR12 LTR ERV1 -133 581 480 332 278 43 0 chrY 12085736 12085851 -39427733 - LTR30 LTR ERV1 -79 643 524 1191 142 9 66 chrY 12085851 12086077 -39427507 - LTR12 LTR ERV1 -456 258 46 2224 86 4 0 chrY 12086077 12086380 -39427204 + AluY SINE Alu 1 304 0 244 186 0 0 chrY 12086387 12086430 -39427154 - LTR30 LTR ERV1 -679 43 1 32450 129 25 11 chrY 12086431 12094586 -39418998 - MER4A-int LTR ERV1 -1 8398 54 612 173 42 18 chrY 12094578 12094704 -39418880 - LTR12 LTR ERV1 -130 584 300 * 322 244 12 0 chrY 12094704 12094790 -39418794 - LTR30 LTR ERV1 -80 642 556 1353 138 200 4 chrY 12094792 12095032 -39418552 - LTR12 LTR ERV1 -427 287 1 10083 175 46 31 chrY 12095033 12095406 -39418178 - MER4A-int LTR ERV1 -2198 4560 4194 1552 174 10 35 chrY 12095406 12095694 -39417890 - AluY SINE Alu -25 286 6 10083 175 46 31 chrY 12095694 12096758 -39416826 - MER4A-int LTR ERV1 -2564 4194 3079 588 99 0 12 chrY 12096758 12096839 -39416745 + MADE1 DNA Mariner 1 80 0 10083 175 46 31 chrY 12096839 12097475 -39416109 - MER4A-int LTR ERV1 -3679 3079 2454 1195 258 91 46 chrY 12097475 12098045 -39415539 + LTR9 LTR ERV1 1 596 -16 356 116 0 0 chrY 12098062 12098131 -39415453 - MER4B-int LTR ERV1 -4301 2457 2389 233 245 0 5 chrY 12098148 12098304 -39415280 + AluSq/x SINE Alu 2 237 -62 9085 162 65 67 chrY 12098357 12099172 -39414412 - MER4A-int LTR ERV1 -4368 2390 1575 471 203 0 0 chrY 12099172 12099266 -39414318 + AluSg/x SINE Alu 205 298 0 9085 162 65 67 chrY 12099266 12100573 -39413011 - MER4A-int LTR ERV1 -5183 1575 198 999 266 84 32 chrY 12100625 12100933 -39412651 - MER4A-int LTR ERV1 -4163 2168 1845 3614 256 57 6 chrY 12101123 12102115 -39411469 + L1PB1 LINE L1 6 1047 -5816 6936 171 53 10 chrY 12102117 12102455 -39411129 + L1PB1 LINE L1 1093 1415 -5448 3575 133 6 8 chrY 12102455 12102967 -39410617 - MER9 LTR ERVK 0 511 1 6936 171 53 10 chrY 12102967 12104090 -39409494 + L1PB1 LINE L1 1415 2759 -4104 3439 126 42 70 chrY 12104132 12104745 -39408839 - LTR4 LTR ERV1 0 596 1 12847 204 25 25 chrY 12104751 12108430 -39405154 + L1PB1 LINE L1 2833 6507 -360 221 182 23 0 chrY 12108431 12108475 -39405109 + (CATA)n Simple_repeat Simple_repeat 2 46 0 230 209 45 0 chrY 12108478 12108545 -39405039 - L1MCa LINE L1 -4362 2064 1995 2135 159 33 3 chrY 12108552 12108911 -39404673 + L1PB1 LINE L1 6498 6867 0 195 42 0 0 chrY 12108944 12108968 -39404616 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 371 134 60 15 chrY 12108978 12109045 -39404539 - MER4A-int LTR ERV1 -5790 808 739 532 181 43 26 chrY 12109065 12109281 -39404303 - MER4A-int LTR ERV1 -5992 606 344 5768 213 72 82 chrY 12109285 12110851 -39402733 + L1PA8 LINE L1 719 2261 -4601 2781 22 0 0 chrY 12110851 12111162 -39402422 + AluYa5 SINE Alu 1 311 0 5768 213 72 82 chrY 12111162 12111643 -39401941 + L1PA8 LINE L1 2261 2745 -4117 * 18351 125 22 2 chrY 12111640 12115391 -39398193 + L1PA8 LINE L1 3067 6894 0 1403 201 99 19 chrY 12115396 12115719 -39397865 - MER4A-int LTR ERV1 -6249 349 1 1494 183 8 0 chrY 12115721 12115977 -39397607 - MER4A LTR ERV1 0 664 417 1038 148 0 0 chrY 12115977 12116030 -39397554 + (TTTC)n Simple_repeat Simple_repeat 1 229 0 1038 148 0 0 chrY 12116030 12116206 -39397378 + (TTTC)n Simple_repeat Simple_repeat 4 179 0 2084 138 19 58 chrY 12116388 12116765 -39396819 - MER4B LTR ERV1 -248 362 1 887 249 55 121 chrY 12116848 12117526 -39396058 - MER21B LTR ERV1 -207 656 24 28 0 0 0 chrY 12118065 12118093 -39395491 + AT_rich Low_complexity Low_complexity 1 28 0 2215 228 42 15 chrY 12118112 12118436 -39395148 - L1MB5 LINE L1 -8 6166 5821 1755 129 17 46 chrY 12118436 12118738 -39394846 - AluSx SINE Alu -19 293 1 2215 228 42 15 chrY 12118738 12118943 -39394641 - L1MB5 LINE L1 -353 5821 5623 341 164 123 0 chrY 12120059 12120132 -39393452 - MER45A DNA AcHobo -1 177 96 41513 49 29 2 chrY 12120132 12126108 -39387476 + L1PA3 LINE L1 4 6146 -9 436 298 18 0 chrY 12126108 12126222 -39387362 - MER45A DNA AcHobo -60 118 3 392 312 111 21 chrY 12126825 12127059 -39386525 + MIR SINE MIR 8 262 0 226 369 0 54 chrY 12127236 12127347 -39386237 + L3 LINE CR1 1460 1564 -13 182 237 53 53 chrY 12127623 12127699 -39385885 + MIR SINE MIR 95 170 -92 357 24 0 0 chrY 12127876 12127918 -39385666 + (TG)n Simple_repeat Simple_repeat 2 43 0 705 219 0 3 chrY 12127919 12128142 -39385442 - AluJb SINE Alu -22 290 2 1985 141 3 3 chrY 12128154 12128451 -39385133 - AluSx SINE Alu -8 304 8 207 216 20 0 chrY 12128655 12128706 -39384878 + CT-rich Low_complexity Low_complexity 3 54 0 185 167 0 0 chrY 12129336 12129366 -39384218 + MIR SINE MIR 111 140 -68 378 248 67 0 chrY 12129658 12129763 -39383821 - MIR SINE MIR -72 190 79 2423 15 0 0 chrY 12132014 12132307 -39381277 + AluYa5 SINE Alu 46 338 0 1572 149 48 0 chrY 12133408 12133676 -39379908 + AluSx SINE Alu 25 305 -7 23 0 0 0 chrY 12135147 12135170 -39378414 + AT_rich Low_complexity Low_complexity 1 23 0 219 234 0 0 chrY 12135274 12135321 -39378263 - L2 LINE L2 0 3313 3267 2072 122 7 0 chrY 12135325 12135613 -39377971 - AluSx SINE Alu -22 290 1 1976 137 3 10 chrY 12135733 12136047 -39377537 - AluSx SINE Alu 0 312 1 234 252 41 7 chrY 12136653 12136800 -39376784 + (TTATA)n Simple_repeat Simple_repeat 2 153 0 232 328 172 0 chrY 12136880 12136996 -39376588 - L2 LINE L2 -4 3268 3133 1919 151 27 7 chrY 12138267 12138566 -39375018 + AluSc SINE Alu 3 307 -2 2883 249 63 41 chrY 12139226 12140391 -39373193 + L1MB7 LINE L1 3135 4325 -1821 1425 200 0 28 chrY 12140404 12140487 -39373097 + AluJb SINE Alu 12 96 -216 1745 154 87 42 chrY 12140487 12140845 -39372739 + THE1C LTR MaLR 1 374 -1 1425 200 0 28 chrY 12140845 12141046 -39372538 + AluJb SINE Alu 96 288 -24 24 32 0 0 chrY 12141046 12141077 -39372507 + AT_rich Low_complexity Low_complexity 1 31 0 2024 200 23 14 chrY 12141137 12141567 -39372017 + L1MB7 LINE L1 5369 5802 -489 1282 231 88 0 chrY 12141558 12141887 -39371697 + L1MB3 LINE L1 5568 5925 -258 * 1767 164 73 95 chrY 12141899 12142406 -39371178 - LTR1 LTR ERV1 -289 496 1 580 173 50 14 chrY 12142765 12142904 -39370680 + L1MB7 LINE L1 6040 6183 -1 219 319 80 18 chrY 12143406 12143519 -39370065 + MIR SINE MIR 69 188 -74 2322 112 0 0 chrY 12145337 12145640 -39367944 + AluSg SINE Alu 1 303 -7 520 304 74 47 chrY 12146393 12146689 -39366895 + LTR57-int LTR ERVL 1875 2178 -3165 1729 181 3 10 chrY 12148237 12148554 -39365030 + AluSx SINE Alu 1 312 0 455 275 77 10 chrY 12148587 12148794 -39364790 + MER31-int LTR ERV1 2356 2576 -2547 390 203 65 72 chrY 12148766 12148904 -39364680 + MER31-int LTR ERV1 2460 2596 -2340 * 598 170 128 144 chrY 12148898 12149122 -39364462 + MER31-int LTR ERV1 1282 1499 -3437 2524 84 0 0 chrY 12149122 12149433 -39364151 - AluY SINE Alu 0 311 1 598 170 128 144 chrY 12149433 12149584 -39364000 + MER31-int LTR ERV1 1499 1651 -3285 43776 53 2 1 chrY 12150739 12156888 -39356696 + L1PA4 LINE L1 1 6155 0 868 259 95 11 chrY 12156892 12157154 -39356430 + LTR57-int LTR ERVL 2837 3120 -2410 259 281 88 18 chrY 12157707 12157821 -39355763 + L2 LINE L2 3192 3313 0 726 175 46 133 chrY 12158388 12158597 -39354987 + MER20 DNA MER1_type 1 188 -31 1940 121 0 7 chrY 12158597 12158870 -39354714 + AluSg SINE Alu 35 305 -5 726 175 46 133 chrY 12158870 12158900 -39354684 + MER20 DNA MER1_type 188 219 0 401 281 55 0 chrY 12158981 12159109 -39354475 + MER5B DNA MER1_type 4 138 -40 2067 127 0 3 chrY 12159439 12159765 -39353819 - AluSg SINE Alu 0 325 1 1668 178 3 24 chrY 12159923 12160221 -39353363 + AluSx SINE Alu 5 296 -16 1666 173 37 0 chrY 12160320 12160620 -39352964 - AluSx SINE Alu -1 311 1 263 247 0 25 chrY 12160682 12160763 -39352821 + CT-rich Low_complexity Low_complexity 1 79 0 239 318 36 18 chrY 12161144 12161254 -39352330 + L2 LINE L2 2140 2251 -1063 3314 120 0 0 chrY 12161327 12161795 -39351789 - L1PB1 LINE L1 -185 5966 5499 1101 122 0 64 chrY 12161796 12161984 -39351600 + L1PB1 LINE L1 5974 6149 -2 1882 168 3 10 chrY 12162670 12162980 -39350604 - AluSx SINE Alu -4 308 1 281 351 47 32 chrY 12163027 12163432 -39350152 - L1ME3A LINE L1 -235 5935 5525 623 239 17 0 chrY 12163441 12163558 -39350026 + FLAM_C SINE Alu 1 119 -24 330 277 71 52 chrY 12164149 12164304 -39349280 - MIR SINE MIR -64 198 41 229 279 13 13 chrY 12165375 12165454 -39348130 + L1MDa LINE L1 1859 1937 -4603 226 49 24 24 chrY 12165511 12165552 -39348032 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chrY 12165576 12165604 -39347980 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrY 12165616 12165652 -39347932 + AT_rich Low_complexity Low_complexity 1 36 0 234 0 0 0 chrY 12165876 12165902 -39347682 + (TA)n Simple_repeat Simple_repeat 1 26 0 189 132 0 0 chrY 12165923 12165961 -39347623 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 851 169 71 71 chrY 12166576 12166801 -39346783 - AluJo SINE Alu -1 311 87 860 139 60 13 chrY 12167098 12167249 -39346335 + AluSx SINE Alu 14 171 -141 1813 117 37 4 chrY 12167735 12168037 -39345547 - AluSg SINE Alu 0 311 1 25 0 0 0 chrY 12169489 12169514 -39344070 + AT_rich Low_complexity Low_complexity 1 25 0 42027 49 23 1 chrY 12169514 12175536 -39338048 - L1PA3 LINE L1 0 6155 2 312 70 0 0 chrY 12175587 12175630 -39337954 + (TG)n Simple_repeat Simple_repeat 2 44 0 1525 177 8 4 chrY 12176351 12176617 -39336967 - AluJb SINE Alu -13 299 33 237 369 15 23 chrY 12176647 12176777 -39336807 + MER5A DNA MER1_type 9 137 -52 209 157 78 0 chrY 12176809 12176860 -39336724 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 1848 166 0 10 chrY 12176862 12177164 -39336420 + AluSx SINE Alu 1 299 -13 1856 171 43 12 chrY 12178489 12178816 -39334768 - MER1B DNA MER1_type 0 337 1 705 234 120 0 chrY 12178850 12179008 -39334576 - MER45A DNA AcHobo -1 177 1 2125 105 13 0 chrY 12179795 12180100 -39333484 + AluSc SINE Alu 1 309 0 198 0 0 0 chrY 12182463 12182485 -39331099 + (T)n Simple_repeat Simple_repeat 1 22 0 333 0 0 0 chrY 12182860 12182897 -39330687 + (T)n Simple_repeat Simple_repeat 1 37 0 1890 119 82 17 chrY 12182918 12183212 -39330372 + AluSq SINE Alu 1 313 0 633 168 80 9 chrY 12183237 12183350 -39330234 + AluSq/x SINE Alu 2 122 -190 285 253 73 0 chrY 12185415 12185533 -39328051 + MIR SINE MIR 81 208 -54 1282 214 22 54 chrY 12185968 12186281 -39327303 - AluJo SINE Alu -7 305 3 1896 142 0 17 chrY 12187186 12187475 -39326109 + AluSx SINE Alu 1 284 -28 1713 144 20 17 chrY 12187489 12187788 -39325796 + AluSc SINE Alu 1 300 -9 894 191 0 13 chrY 12188281 12188438 -39325146 - AluSg/x SINE Alu -16 296 142 360 200 0 0 chrY 12188442 12188502 -39325082 - AluS SINE Alu -243 60 1 2050 119 3 14 chrY 12188516 12188810 -39324774 - AluSx SINE Alu -11 301 11 749 228 6 13 chrY 12189959 12190117 -39323467 + FRAM SINE Alu 1 157 -19 1192 200 0 9 chrY 12190228 12190453 -39323131 - AluJo SINE Alu -3 309 87 676 164 62 39 chrY 12190457 12190585 -39322999 - FLAM_C SINE Alu -2 131 1 232 254 32 0 chrY 12190615 12190678 -39322906 + CT-rich Low_complexity Low_complexity 2 66 0 1684 153 41 20 chrY 12190960 12191255 -39322329 + AluSc SINE Alu 1 301 -8 640 225 72 34 chrY 12191514 12191723 -39321861 - MER20 DNA MER1_type -2 217 1 273 275 0 50 chrY 12191723 12191883 -39321701 + (TCTCTG)n Simple_repeat Simple_repeat 4 155 0 595 221 25 8 chrY 12192830 12192952 -39320632 + FLAM_A SINE Alu 11 134 -8 1291 210 7 46 chrY 12193159 12193464 -39320120 + AluJo SINE Alu 5 297 -15 512 316 64 0 chrY 12194903 12195074 -39318510 - MER5A DNA MER1_type -7 182 1 231 114 0 0 chrY 12195199 12195234 -39318350 + (TG)n Simple_repeat Simple_repeat 2 36 0 1960 123 0 41 chrY 12195242 12195535 -39318049 - AluY SINE Alu -30 281 1 1735 204 89 34 chrY 12196347 12196787 -39316797 + MLT1C LTR MaLR 3 466 -1 21 0 0 0 chrY 12198662 12198683 -39314901 + AT_rich Low_complexity Low_complexity 1 21 0 2955 6 0 0 chrY 12198700 12199016 -39314568 + AluYb8 SINE Alu 1 316 -2 536 153 0 12 chrY 12199160 12199245 -39314339 + AluJb SINE Alu 205 288 -24 576 149 28 0 chrY 12199372 12199479 -39314105 + L1MB7 LINE L1 5968 6077 -107 42108 46 22 2 chrY 12199497 12205527 -39308057 - L1PA2 LINE L1 0 6155 1 557 122 31 20 chrY 12205528 12205626 -39307958 + L1MB7 LINE L1 6067 6165 -19 41511 66 6 5 chrY 12205626 12211766 -39301818 - L1PA4 LINE L1 -6 6149 1 993 184 38 52 chrY 12212022 12212234 -39301350 + MER2 DNA MER2_type 30 238 -107 24 53 0 0 chrY 12212279 12212317 -39301267 + AT_rich Low_complexity Low_complexity 1 38 0 182 162 54 0 chrY 12212794 12212831 -39300753 - L2 LINE L2 -212 3060 3022 877 191 12 6 chrY 12212956 12213124 -39300460 - AluSq SINE Alu -11 302 134 1737 118 27 8 chrY 12213232 12213494 -39300090 - L1MC1 LINE L1 -1 6332 6066 2129 130 3 0 chrY 12214387 12214688 -39298896 - AluSp SINE Alu -11 302 1 220 273 15 0 chrY 12215050 12215116 -39298468 - MIR SINE MIR -32 230 164 2732 118 0 11 chrY 12215533 12215899 -39297685 - THE1B LTR MaLR -2 362 1 21 0 0 0 chrY 12215973 12215994 -39297590 + AT_rich Low_complexity Low_complexity 1 21 0 259 342 71 7 chrY 12216247 12216402 -39297182 + MIR SINE MIR 69 233 -29 22 0 0 0 chrY 12216412 12216434 -39297150 + AT_rich Low_complexity Low_complexity 1 22 0 1648 161 92 28 chrY 12218005 12218396 -39295188 + L1MB7 LINE L1 5762 6177 -7 194 415 0 0 chrY 12218757 12218875 -39294709 - MIR SINE MIR -61 201 84 1728 176 201 8 chrY 12218916 12219275 -39294309 + MSTA LTR MaLR 1 428 0 21 0 0 0 chrY 12219617 12219638 -39293946 + AT_rich Low_complexity Low_complexity 1 21 0 413 264 100 0 chrY 12219792 12219932 -39293652 - L1MD2 LINE L1 -12 6347 6194 2178 110 3 0 chrY 12220189 12220481 -39293103 - AluSg SINE Alu -17 293 1 2100 137 3 0 chrY 12220783 12221083 -39292501 + AluY SINE Alu 1 301 -10 181 373 0 0 chrY 12222207 12222282 -39291302 - MIR SINE MIR -117 145 71 259 309 81 7 chrY 12222481 12222630 -39290954 + L2 LINE L2 2500 2659 -655 2324 47 44 3 chrY 12222687 12222984 -39290600 + AluY SINE Alu 1 309 -2 267 152 0 0 chrY 12222988 12223034 -39290550 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1829 180 3 3 chrY 12223157 12223463 -39290121 - AluSx SINE Alu -6 306 1 460 300 167 45 chrY 12223506 12223836 -39289748 + L2 LINE L2 2944 3313 0 2311 202 55 0 chrY 12223974 12224409 -39289175 + MER65C LTR ERV1 1 459 -2 1051 236 19 5 chrY 12224528 12224744 -39288840 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chrY 12224796 12224825 -39288759 + AT_rich Low_complexity Low_complexity 1 29 0 202 256 0 0 chrY 12224831 12224874 -39288710 - L2 LINE L2 -20 3252 3210 797 270 94 82 chrY 12224921 12225387 -39288197 + MLT1J LTR MaLR 2 473 -38 197 225 169 28 chrY 12225453 12225524 -39288060 - MIR SINE MIR -115 147 67 375 23 0 0 chrY 12225964 12226008 -39287576 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 837 183 102 0 chrY 12226008 12226145 -39287439 - AluSg/x SINE Alu -25 287 137 305 178 0 0 chrY 12226145 12226190 -39287394 - Alu SINE Alu -254 45 1 2054 140 0 3 chrY 12226296 12226604 -39286980 - AluSx SINE Alu -5 307 1 324 0 0 0 chrY 12226668 12226704 -39286880 + (TA)n Simple_repeat Simple_repeat 2 37 0 280 337 0 11 chrY 12227678 12227767 -39285817 - MIR3 SINE MIR -15 193 106 922 224 109 52 chrY 12228005 12228354 -39285230 - MER39 LTR ERV1 -6 701 333 359 255 37 15 chrY 12228404 12228515 -39285069 - LTR48B LTR ERV1 -514 108 1 1233 267 46 3 chrY 12228558 12228884 -39284700 - MER58B DNA MER1_type -1 340 1 2198 110 10 0 chrY 12228969 12229270 -39284314 - AluSq SINE Alu -9 304 1 689 187 69 149 chrY 12229530 12229905 -39283679 + LTR37A LTR ERV1 81 425 -1 1742 179 0 13 chrY 12231072 12231379 -39282205 - AluJo SINE Alu -9 303 1 5683 96 30 28 chrY 12232941 12233720 -39279864 + LTR17 LTR ERV1 1 780 0 1558 161 12 62 chrY 12234547 12234870 -39278714 - AluSx SINE Alu -5 307 1 980 115 22 7 chrY 12235224 12235363 -39278221 + AluSg1 SINE Alu 1 141 -168 318 240 16 8 chrY 12235364 12235489 -39278095 + CT-rich Low_complexity Low_complexity 2 127 0 28860 125 16 12 chrY 12235534 12241337 -39272247 - L1PA7 LINE L1 -2 6467 622 727 69 59 0 chrY 12241798 12241900 -39271684 - L1P LINE L1 -2683 3463 3356 27 62 0 0 chrY 12241924 12241972 -39271612 + AT_rich Low_complexity Low_complexity 1 48 0 213 339 28 51 chrY 12242195 12242372 -39271212 + MER5B DNA MER1_type 4 176 -2 381 257 21 43 chrY 12242650 12242790 -39270794 + MIR SINE MIR 65 201 -61 264 30 0 0 chrY 12242899 12242932 -39270652 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1234 230 48 79 chrY 12243964 12244511 -39269073 - MER34 LTR ERV1 -9 533 4 385 181 28 0 chrY 12244967 12245039 -39268545 + AluJ/FRAM SINE Alu 227 300 -2 1072 167 20 5 chrY 12245051 12245249 -39268335 - L1MB2 LINE L1 -31 6140 5940 261 57 0 0 chrY 12245276 12245311 -39268273 + (T)n Simple_repeat Simple_repeat 1 35 0 1960 126 4 0 chrY 12245365 12245635 -39267949 + AluSx SINE Alu 31 301 -11 241 254 0 0 chrY 12245839 12245894 -39267690 - MLT1I LTR MaLR -2 407 353 284 308 105 0 chrY 12245959 12246087 -39267497 - MLT1I LTR MaLR -211 198 68 402 198 198 12 chrY 12246843 12246989 -39266595 - MER5A DNA MER1_type -9 180 4 561 139 9 17 chrY 12247648 12247763 -39265821 + CT-rich Low_complexity Low_complexity 1 114 0 * 852 130 5 32 chrY 12247742 12247927 -39265657 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1351 162 81 7 chrY 12247942 12248214 -39265370 - L1MB3 LINE L1 -23 6160 5869 1272 121 1 7 chrY 12248306 12248501 -39265083 - pTR5 LTR ERV1 -2046 392 66 327 213 43 32 chrY 12248501 12248595 -39264989 - LTR30 LTR ERV1 -80 642 548 3593 162 60 50 chrY 12248596 12249548 -39264036 - pTR5 LTR ERV1 -410 2028 741 886 88 7 59 chrY 12250952 12251088 -39262496 - L1MA1 LINE L1 -2 6300 6172 552 217 28 80 chrY 12251115 12251207 -39262377 - MER3 DNA MER1_type -5 204 109 960 199 27 59 chrY 12251207 12251428 -39262156 + MER20 DNA MER1_type 2 215 -4 552 217 28 80 chrY 12251428 12251547 -39262037 - MER3 DNA MER1_type -100 109 4 2650 127 65 0 chrY 12252433 12252820 -39260764 + L1PA10 LINE L1 5755 6166 -2 511 171 12 0 chrY 12253223 12253305 -39260279 + AluSg/x SINE Alu 212 294 -18 8234 75 15 1 chrY 12253470 12254463 -39259121 + LTR13 LTR ERVK 1 1007 0 22 0 0 0 chrY 12254659 12254681 -39258903 + AT_rich Low_complexity Low_complexity 1 22 0 341 177 35 50 chrY 12254884 12255025 -39258559 + (TA)n Simple_repeat Simple_repeat 2 140 0 215 297 0 54 chrY 12255949 12256023 -39257561 - L2 LINE L2 -334 2979 2910 387 319 159 48 chrY 12256075 12256621 -39256963 - L2 LINE L2 -508 2806 2200 2434 84 0 0 chrY 12256939 12257249 -39256335 + AluY SINE Alu 1 310 -1 1252 229 47 7 chrY 12258088 12258385 -39255199 - L1MC2 LINE L1 -58 6286 5978 455 194 19 19 chrY 12258405 12258513 -39255071 + L1PA11 LINE L1 6066 6173 -1 426 219 7 75 chrY 12258897 12259043 -39254541 - pTR5 LTR ERV1 -2284 154 19 342 206 79 56 chrY 12259044 12259170 -39254414 - LTR12 LTR ERV1 -347 367 239 1685 156 100 0 chrY 12259615 12259674 -39253910 + L1PB1 LINE L1 5710 5762 -389 330 26 0 0 chrY 12259674 12259713 -39253871 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 1685 156 100 0 chrY 12259713 12259973 -39253611 + L1PB1 LINE L1 5762 6061 -90 4289 160 123 47 chrY 12259973 12261411 -39252173 + pTR5 LTR ERV1 743 2438 0 575 141 0 0 chrY 12261414 12261506 -39252078 + L1PB1 LINE L1 6058 6149 -2 1561 205 27 23 chrY 12261650 12262040 -39251544 + MLT1B LTR MaLR 1 396 0 1308 153 14 0 chrY 12262044 12262266 -39251318 + MLT1B LTR MaLR 162 386 -4 704 192 0 23 chrY 12262604 12262734 -39250850 - FLAM_C SINE Alu -6 127 1 213 205 133 48 chrY 12262774 12262857 -39250727 + MIR SINE MIR 16 105 -103 1131 196 0 0 chrY 12263318 12263502 -39250082 + AluSx SINE Alu 2 185 -127 836 203 14 14 chrY 12263502 12263650 -39249934 - AluJo SINE Alu -163 149 2 3297 171 8 28 chrY 12264093 12264740 -39248844 - MER41B LTR ERV1 -11 597 1 22 0 0 0 chrY 12264865 12264887 -39248697 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chrY 12265839 12265869 -39247715 + AT_rich Low_complexity Low_complexity 1 30 0 474 361 33 0 chrY 12266110 12266293 -39247291 - MER5A DNA MER1_type 0 189 1 231 143 33 33 chrY 12266810 12266901 -39246683 + (TA)n Simple_repeat Simple_repeat 1 91 0 2037 125 3 0 chrY 12267351 12267646 -39245938 + AluY SINE Alu 1 296 -15 731 282 76 31 chrY 12267723 12268457 -39245127 - L1MEc LINE L1 -2659 3556 2790 499 280 95 24 chrY 12268463 12268799 -39244785 - L1MEc LINE L1 -4394 2002 1643 255 31 0 0 chrY 12268814 12268846 -39244738 + (TG)n Simple_repeat Simple_repeat 1 32 0 1444 138 36 4 chrY 12268850 12269075 -39244509 - AluY SINE Alu -37 274 43 1251 322 71 43 chrY 12269081 12269504 -39244080 - L1MEc LINE L1 -4767 1629 1219 246 32 0 0 chrY 12269504 12269535 -39244049 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1251 322 71 43 chrY 12269535 12269579 -39244005 - L1MEc LINE L1 -5177 1219 1178 2218 123 3 0 chrY 12269579 12269888 -39243696 - AluSp SINE Alu -3 310 1 1251 322 71 43 chrY 12269888 12270891 -39242693 - L1MEc LINE L1 -5218 1178 117 2544 133 46 14 chrY 12270891 12271326 -39242258 - HSMAR2 DNA Mariner 0 1302 854 1871 181 115 13 chrY 12271323 12271715 -39241869 - LTR51 LTR ERV1 -239 432 1 * 377 235 25 0 chrY 12271715 12271794 -39241790 - MER20 DNA MER1_type -107 112 32 1927 130 79 23 chrY 12271873 12272227 -39241357 - THE1C LTR MaLR -1 374 1 188 222 16 127 chrY 12273102 12273165 -39240419 + L2 LINE L2 3184 3239 -33 1652 186 3 17 chrY 12273780 12274081 -39239503 - AluSx SINE Alu -15 297 1 271 291 47 0 chrY 12274210 12274296 -39239288 + MER68 LTR ERV1 4 93 -469 554 300 70 21 chrY 12274357 12274684 -39238900 - HAL1b LINE L1 -358 990 648 42310 54 2 2 chrY 12274718 12280875 -39232709 - L1PA3 LINE L1 0 6155 1 1004 95 0 0 chrY 12280879 12281016 -39232568 - AluY SINE Alu -16 295 159 405 329 34 30 chrY 12281278 12281512 -39232072 - HAL1b LINE L1 -854 494 260 1564 158 4 0 chrY 12281553 12281793 -39231791 - AluSx SINE Alu -14 298 58 21 0 0 0 chrY 12284020 12284041 -39229543 + AT_rich Low_complexity Low_complexity 1 21 0 2109 121 16 22 chrY 12284353 12284732 -39228852 - AluSx SINE Alu 0 377 1 235 286 88 0 chrY 12285656 12285747 -39227837 - MLT1J2 LTR MaLR -295 155 57 1541 203 16 3 chrY 12286592 12286898 -39226686 + AluJo SINE Alu 3 312 0 2260 109 0 0 chrY 12288139 12288441 -39225143 - AluY SINE Alu -9 302 1 1568 150 3 92 chrY 12288448 12288623 -39224961 - AluSx SINE Alu -15 297 163 297 0 0 0 chrY 12288623 12288656 -39224928 + (TG)n Simple_repeat Simple_repeat 2 34 0 1568 150 3 92 chrY 12288656 12288806 -39224778 - AluSx SINE Alu -149 163 1 3189 155 11 19 chrY 12288933 12289463 -39224121 - MER1A DNA MER1_type 0 527 2 1262 204 74 11 chrY 12291143 12291412 -39222172 + AluJo SINE Alu 1 286 -26 2055 142 0 3 chrY 12291739 12292035 -39221549 - AluSg SINE Alu -11 299 5 36 40 0 0 chrY 12292303 12292353 -39221231 + AT_rich Low_complexity Low_complexity 1 50 0 216 158 0 0 chrY 12292502 12292540 -39221044 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1981 159 0 0 chrY 12292552 12292841 -39220743 - AluSq SINE Alu -24 289 1 180 211 189 22 chrY 12293025 12293115 -39220469 - L3b LINE CR1 -275 1308 1204 208 143 0 0 chrY 12297635 12297670 -39215914 + (A)n Simple_repeat Simple_repeat 1 35 0 303 104 0 0 chrY 12298717 12298765 -39214819 + (CA)n Simple_repeat Simple_repeat 1 48 0 186 43 0 0 chrY 12301388 12301411 -39212173 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 515 156 16 66 chrY 12302327 12302377 -39211207 - L1MB7 LINE L1 -10 6174 6123 8921 44 3 0 chrY 12302377 12303445 -39210139 + MER11C LTR ERVK 1 1071 0 515 156 16 66 chrY 12303445 12303516 -39210068 - L1MB7 LINE L1 -61 6123 6059 1913 102 0 0 chrY 12303518 12303783 -39209801 - AluY SINE Alu -5 306 42 211 302 63 38 chrY 12304073 12304232 -39209352 + L2 LINE L2 2366 2528 -786 524 344 59 60 chrY 12304430 12305116 -39208468 + L2 LINE L2 2637 3311 -2 309 281 50 22 chrY 12305215 12305354 -39208230 + L1MB7 LINE L1 6033 6175 -9 956 229 14 62 chrY 12306882 12307174 -39206410 - LTR4 LTR ERV1 -2 594 317 463 282 18 47 chrY 12307376 12307546 -39206038 - LTR4 LTR ERV1 -396 200 36 216 0 0 0 chrY 12308720 12308744 -39204840 + (T)n Simple_repeat Simple_repeat 1 24 0 211 224 17 35 chrY 12309810 12309868 -39203716 + MIR SINE MIR 113 169 -93 1088 229 0 0 chrY 12309962 12310172 -39203412 + MER58A DNA MER1_type 1 210 -14 218 305 24 24 chrY 12310362 12310444 -39203140 + MIR SINE MIR 60 141 -67 327 203 0 0 chrY 12310545 12310614 -39202970 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1555 209 13 13 chrY 12310929 12311240 -39202344 - AluJo SINE Alu -1 311 1 519 233 7 67 chrY 12312004 12312154 -39201430 - L2 LINE L2 -1 3312 3172 2104 154 64 29 chrY 12312175 12312689 -39200895 - MLT2A2 LTR ERVL 0 554 1 1603 265 133 42 chrY 12312786 12313775 -39199809 - L2 LINE L2 -281 3032 1959 3260 138 11 18 chrY 12314086 12314637 -39198947 + L1PA10 LINE L1 5606 6152 -16 1601 204 3 7 chrY 12315627 12315926 -39197658 - AluJb SINE Alu -10 302 5 43257 104 36 30 chrY 12316469 12324715 -39188869 + HERV9 LTR ERV1 17 6550 0 7376 119 103 15 chrY 12324715 12326788 -39186796 + HERV9 LTR ERV1 506 8399 0 367 296 52 9 chrY 12327003 12327118 -39186466 - L2 LINE L2 -5 3308 3189 2282 123 0 0 chrY 12327542 12327852 -39185732 - AluSq SINE Alu -3 310 1 300 393 15 15 chrY 12328278 12328413 -39185171 - L2 LINE L2 0 3272 3138 1226 214 81 27 chrY 12328574 12328944 -39184640 + MLT1D LTR MaLR 116 505 0 202 243 54 63 chrY 12328946 12329057 -39184527 - MIR SINE MIR -68 194 85 190 253 41 153 chrY 12329500 12329639 -39183945 + L2 LINE L2 2855 3008 -305 610 247 79 0 chrY 12329639 12329829 -39183755 - MER3 DNA MER1_type -4 205 1 190 253 41 153 chrY 12329829 12329977 -39183607 + L2 LINE L2 3008 3079 -234 2337 71 6 46 chrY 12329977 12330303 -39183281 - AluSq SINE Alu 0 313 1 190 253 41 153 chrY 12330303 12330453 -39183131 + L2 LINE L2 3079 3244 -69 315 0 0 0 chrY 12333635 12333670 -39179914 + (CA)n Simple_repeat Simple_repeat 2 36 0 605 234 9 0 chrY 12333678 12333789 -39179795 - FLAM_A SINE Alu -30 112 1 840 173 0 0 chrY 12335080 12335213 -39178371 + FLAM_C SINE Alu 1 133 0 187 256 44 7 chrY 12337329 12337466 -39176118 + CT-rich Low_complexity Low_complexity 3 144 0 40263 53 3 4 chrY 12338068 12344213 -39169371 + L1PA3 LINE L1 13 6152 -3 297 219 0 0 chrY 12345875 12345948 -39167636 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 39 22 0 0 chrY 12346878 12346924 -39166660 + AT_rich Low_complexity Low_complexity 1 46 0 28 29 0 0 chrY 12347035 12347070 -39166514 + AT_rich Low_complexity Low_complexity 1 35 0 1020 184 38 19 chrY 12347658 12347870 -39165714 - MER20 DNA MER1_type -3 216 1 299 80 27 27 chrY 12348271 12348346 -39165238 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 741 178 7 30 chrY 12348858 12348993 -39164591 + FLAM_A SINE Alu 1 132 -1 1386 177 17 27 chrY 12349491 12349791 -39163793 - L1PB4 LINE L1 -76 6080 5784 1284 146 46 13 chrY 12349790 12350029 -39163555 + L1PB4 LINE L1 5519 5765 -391 * 2115 98 103 59 chrY 12350040 12350449 -39163135 - LTR49 LTR ERV1 -168 427 1 1567 175 52 14 chrY 12350981 12351272 -39162312 + AluJo SINE Alu 1 302 -10 194 277 198 10 chrY 12351310 12351411 -39162173 + MIR SINE MIR 101 220 -42 234 0 0 0 chrY 12351415 12351441 -39162143 + (TG)n Simple_repeat Simple_repeat 2 27 0 5609 128 10 2 chrY 12351458 12352524 -39161060 + L1PA13 LINE L1 5098 6163 0 1003 144 27 78 chrY 12353177 12353434 -39160150 - L1MD2 LINE L1 0 6359 6116 305 345 71 18 chrY 12353977 12354145 -39159439 + MER5B DNA MER1_type 1 177 -1 443 307 74 62 chrY 12354846 12354995 -39158589 - MIR SINE MIR -4 258 112 1901 124 22 0 chrY 12354995 12355269 -39158315 + AluSx SINE Alu 1 280 -32 252 0 0 0 chrY 12355269 12355297 -39158287 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 443 307 74 62 chrY 12355297 12355390 -39158194 - MIR SINE MIR -149 113 12 275 228 17 56 chrY 12355475 12355655 -39157929 + (TA)n Simple_repeat Simple_repeat 2 174 0 * 283 203 51 45 chrY 12355590 12355767 -39157817 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 206 318 15 15 chrY 12355899 12355965 -39157619 - MER5B DNA MER1_type -111 67 2 21 0 0 0 chrY 12356660 12356681 -39156903 + AT_rich Low_complexity Low_complexity 1 21 0 277 279 0 13 chrY 12356965 12357044 -39156540 + Charlie2 DNA MER1_type 369 446 -2416 2110 109 7 33 chrY 12357716 12358020 -39155564 - AluSg SINE Alu -14 296 1 312 250 29 70 chrY 12358656 12358928 -39154656 - Charlie7 DNA MER1_type -3 2609 2349 595 332 52 13 chrY 12358951 12359334 -39154250 - Charlie7 DNA MER1_type -1898 714 317 210 191 21 0 chrY 12360181 12360228 -39153356 + T-rich Low_complexity Low_complexity 5 52 0 238 146 0 0 chrY 12360862 12360903 -39152681 - MLT1K LTR MaLR -64 524 484 332 164 15 0 chrY 12362030 12362097 -39151487 + CT-rich Low_complexity Low_complexity 2 69 0 1708 201 3 6 chrY 12362100 12362413 -39151171 - AluJo SINE Alu 0 312 1 2650 137 8 81 chrY 12362422 12362888 -39150696 + MER4B LTR ERV1 1 576 -203 183 42 0 0 chrY 12362888 12362912 -39150672 + (TTATG)n Simple_repeat Simple_repeat 1 24 0 2650 137 8 81 chrY 12362912 12363103 -39150481 + MER4B LTR ERV1 576 779 0 306 0 0 0 chrY 12363545 12363579 -39150005 + (CA)n Simple_repeat Simple_repeat 2 35 0 1077 305 114 54 chrY 12363612 12364967 -39148617 - L1M4 LINE L1 -1692 4454 3019 219 316 7 22 chrY 12365245 12365295 -39148289 + (CATATA)n Simple_repeat Simple_repeat 1 50 -87 1963 155 0 7 chrY 12365295 12365592 -39147992 + AluSx SINE Alu 1 295 -17 219 316 7 22 chrY 12365592 12365680 -39147904 + (CATATA)n Simple_repeat Simple_repeat 50 137 0 570 310 57 62 chrY 12365707 12366146 -39147438 + LTR16C LTR ERVL 51 487 -4 22 0 0 0 chrY 12367341 12367363 -39146221 + AT_rich Low_complexity Low_complexity 1 22 0 1254 95 0 0 chrY 12367613 12367793 -39145791 + (TTTC)n Simple_repeat Simple_repeat 1 359 0 1254 95 0 0 chrY 12367793 12367972 -39145612 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1252 151 31 9 chrY 12368205 12368430 -39145154 + MER30 DNA MER1_type 1 230 0 2211 92 20 7 chrY 12369180 12369541 -39144043 + AluSp SINE Alu 1 313 0 606 281 120 43 chrY 12371601 12372068 -39141516 + MLT1F1 LTR MaLR 60 562 -5 3223 164 10 92 chrY 12372068 12372337 -39141247 - MER44D DNA MER2_type -1882 705 416 2357 94 32 29 chrY 12372337 12372711 -39140873 + THE1C LTR MaLR 1 375 0 3223 164 10 92 chrY 12372711 12373209 -39140375 - MER44D DNA MER2_type -2171 416 1 275 261 25 84 chrY 12373519 12373602 -39139982 + MIR SINE MIR 80 157 -105 2379 49 0 3 chrY 12373602 12373915 -39139669 + AluY SINE Alu 1 312 0 275 261 25 84 chrY 12373915 12373949 -39139635 + MIR SINE MIR 157 191 -71 203 133 0 0 chrY 12374647 12374677 -39138907 + (TC)n Simple_repeat Simple_repeat 1 30 0 214 301 0 55 chrY 12375708 12375781 -39137803 + L3 LINE CR1 888 956 -621 1556 203 13 23 chrY 12375942 12376242 -39137342 - AluJo SINE Alu -11 301 5 409 309 164 35 chrY 12376375 12376692 -39136892 + L3 LINE CR1 1112 1469 -108 1313 259 73 77 chrY 12377245 12378124 -39135460 + L1MC4 LINE L1 7048 7922 -120 659 182 0 28 chrY 12378231 12378412 -39135172 + (CAGA)n Simple_repeat Simple_repeat 2 177 0 288 130 0 0 chrY 12378446 12378492 -39135092 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 752 173 6 0 chrY 12378493 12378672 -39134912 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 238 77 32 0 chrY 12378673 12378740 -39134844 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1842 130 11 4 chrY 12378747 12379008 -39134576 + AluSq SINE Alu 1 263 -50 186 103 0 0 chrY 12379019 12379048 -39134536 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 316 242 33 50 chrY 12379063 12379183 -39134401 + L1MC4 LINE L1 7925 8042 0 900 46 33 13 chrY 12380085 12380237 -39133347 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 1960 143 0 13 chrY 12380240 12380540 -39133044 - AluSg SINE Alu -14 296 1 39996 57 1 1 chrY 12380621 12386769 -39126815 + L1PA2 LINE L1 10 6155 0 351 287 143 42 chrY 12386783 12386968 -39126616 + L1MEc LINE L1 1848 2069 -4327 2308 92 7 0 chrY 12386968 12387260 -39126324 - AluSp SINE Alu -19 294 1 351 287 143 42 chrY 12387260 12387339 -39126245 + L1MEc LINE L1 2069 2139 -4257 552 100 0 0 chrY 12387412 12387492 -39126092 + MADE1 DNA Mariner 1 80 0 569 174 8 8 chrY 12387499 12387620 -39125964 + MLT2B2 LTR ERVL 1 121 -394 1924 131 81 0 chrY 12388018 12388301 -39125283 + AluSg SINE Alu 5 310 0 1859 134 87 0 chrY 12388644 12388919 -39124665 - AluSx SINE Alu -13 299 1 208 256 0 0 chrY 12390109 12390152 -39123432 + A-rich Low_complexity Low_complexity 3 45 0 211 336 62 31 chrY 12391333 12391461 -39122123 + MIR SINE MIR 130 261 -1 351 0 0 0 chrY 12391680 12391719 -39121865 + (T)n Simple_repeat Simple_repeat 1 39 0 1925 172 18 18 chrY 12392161 12392562 -39121022 - L1PA16 LINE L1 -2 6164 5764 373 177 0 13 chrY 12392564 12392643 -39120941 - L1P4 LINE L1 -356 5810 5733 343 152 0 0 chrY 12392963 12393029 -39120555 + L1P5 LINE L1 5594 5659 -492 1684 194 0 0 chrY 12393805 12394094 -39119490 + AluJb SINE Alu 1 289 -23 1784 152 9 43 chrY 12394158 12394481 -39119103 + AluJo SINE Alu 1 312 0 23 0 0 0 chrY 12394581 12394604 -39118980 + AT_rich Low_complexity Low_complexity 1 23 0 324 292 19 19 chrY 12394638 12394792 -39118792 + L1MEd LINE L1 1292 1445 -4971 363 265 74 33 chrY 12394792 12395062 -39118522 + L1MEd LINE L1 1300 1662 -4840 1179 247 63 28 chrY 12395073 12395185 -39118399 + L1MEd LINE L1 2837 2944 -3482 2007 143 14 51 chrY 12395185 12395535 -39118049 + MER1B DNA MER1_type 1 337 0 1179 247 63 28 chrY 12395535 12396093 -39117491 + L1MEd LINE L1 2944 3530 -2896 208 182 0 45 chrY 12396102 12396146 -39117438 + GA-rich Low_complexity Low_complexity 1 42 0 29708 40 4 1 chrY 12396169 12400773 -39112811 - L1PA3 LINE L1 -3 6152 1539 4897 84 6 1 chrY 12400782 12401476 -39112108 - L1PA3 LINE L1 -5448 698 2 624 268 168 68 chrY 12401527 12402319 -39111265 + L1MEd LINE L1 3617 4329 -2097 2835 125 9 21 chrY 12402319 12402752 -39110832 - MSTA LTR MaLR 0 428 1 624 268 168 68 chrY 12402752 12402784 -39110800 + L1MEd LINE L1 4329 4356 -2070 368 170 11 21 chrY 12402784 12402878 -39110706 - L1PB1 LINE L1 0 6151 6059 624 268 168 68 chrY 12402878 12402977 -39110607 + L1MEd LINE L1 4356 4444 -1982 1518 72 5 0 chrY 12402977 12403184 -39110400 + L1MA1 LINE L1 6095 6302 0 624 268 168 68 chrY 12403184 12403559 -39110025 + L1MEd LINE L1 4444 5046 -1380 1792 134 33 18 chrY 12404298 12404633 -39108951 - L1MA5A LINE L1 -4 6293 5954 284 166 96 118 chrY 12404761 12404948 -39108636 + MER53 DNA DNA 1 183 -6 240 279 39 16 chrY 12404958 12405087 -39108497 + L1ME2 LINE L1 676 807 -5609 479 316 46 28 chrY 12405355 12405640 -39107944 + L1ME2 LINE L1 5290 5579 -847 1603 268 60 27 chrY 12405660 12406355 -39107229 + L1ME2 LINE L1 5620 6337 -107 2477 106 11 0 chrY 12406449 12406798 -39106786 + THE1A LTR MaLR 1 353 -2 604 94 0 10 chrY 12406800 12406896 -39106688 + THE1A-int LTR MaLR 1 95 -1485 309 310 13 77 chrY 12407229 12407384 -39106200 + L1MC5 LINE L1 7757 7901 -60 1062 154 39 5 chrY 12407437 12407645 -39105939 + L1MB1 LINE L1 5842 6056 -133 1624 177 59 33 chrY 12407646 12408183 -39105401 - MLT2A2 LTR ERVL -6 548 1 387 233 0 33 chrY 12408185 12408305 -39105279 + L1MB1 LINE L1 6053 6168 0 308 302 166 18 chrY 12408371 12408540 -39105044 + MIR3 SINE MIR 1 194 -14 355 197 0 0 chrY 12408593 12408654 -39104930 + L2 LINE L2 3210 3270 -2 1293 280 57 18 chrY 12409378 12409657 -39103927 + MLT2B2 LTR ERVL 1 309 -206 2070 66 69 7 chrY 12409657 12409931 -39103653 - AluY SINE Alu -20 291 1 1293 280 57 18 chrY 12409931 12410147 -39103437 + MLT2B2 LTR ERVL 309 515 0 21 0 0 0 chrY 12411314 12411335 -39102249 + AT_rich Low_complexity Low_complexity 1 21 0 350 232 31 9 chrY 12412214 12412542 -39101042 + (TA)n Simple_repeat Simple_repeat 1 335 0 320 183 29 0 chrY 12412823 12412960 -39100624 + (TA)n Simple_repeat Simple_repeat 1 141 0 188 198 28 9 chrY 12413008 12413114 -39100470 + (TA)n Simple_repeat Simple_repeat 1 108 0 294 295 0 25 chrY 12413603 12413725 -39099859 + CT-rich Low_complexity Low_complexity 1 119 0 184 241 0 29 chrY 12413737 12413907 -39099677 + CT-rich Low_complexity Low_complexity 1 165 0 420 241 0 58 chrY 12413945 12414136 -39099448 + CT-rich Low_complexity Low_complexity 1 180 0 312 211 0 33 chrY 12414152 12414332 -39099252 + CT-rich Low_complexity Low_complexity 4 177 0 241 236 0 30 chrY 12414370 12414535 -39099049 + CT-rich Low_complexity Low_complexity 2 161 0 22 0 0 0 chrY 12415440 12415462 -39098122 + GC_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chrY 12416001 12416048 -39097536 + (TG)n Simple_repeat Simple_repeat 2 48 0 252 208 15 88 chrY 12416102 12416211 -39097373 - MLT2C1 LTR ERVL -34 430 260 1109 206 30 6 chrY 12416211 12416662 -39096922 + L1M2 LINE L1 5158 5689 -611 27 0 0 0 chrY 12417786 12417813 -39095771 + AT_rich Low_complexity Low_complexity 1 27 0 * 258 222 56 11 chrY 12417805 12417895 -39095689 - L1MB3 LINE L1 -3 6180 6087 * 3559 179 38 52 chrY 12417891 12418911 -39094673 - L1MA4 LINE L1 -280 6020 4987 314 73 0 18 chrY 12418911 12418966 -39094618 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3559 179 38 52 chrY 12418966 12418981 -39094603 - L1MA4 LINE L1 -1313 4987 4973 1702 144 4 22 chrY 12418981 12419259 -39094325 - AluSx SINE Alu -39 273 1 3559 179 38 52 chrY 12419259 12419783 -39093801 - L1MA4 LINE L1 -1327 4973 4492 1377 174 33 7 chrY 12419888 12420164 -39093420 + Tigger1 DNA MER2_type 1 283 -2135 345 91 36 0 chrY 12420172 12420227 -39093357 + L1 LINE L1 4711 4767 -1379 634 183 7 39 chrY 12420241 12420394 -39093190 + L1M1 LINE L1 18 165 -7400 1435 77 0 0 chrY 12420401 12420596 -39092988 + THE1A LTR MaLR 1 195 -160 1057 166 0 52 chrY 12421276 12421487 -39092097 - AluSg/x SINE Alu 0 312 113 297 170 0 0 chrY 12421503 12421556 -39092028 + L1M1 LINE L1 113 165 -7400 574 116 0 0 chrY 12421563 12421649 -39091935 + THE1A LTR MaLR 1 86 -269 427 245 49 86 chrY 12421657 12421902 -39091682 - MER84-int LTR ERV1 -1561 4968 4733 463 338 16 24 chrY 12422313 12422695 -39090889 - MER84-int LTR ERV1 -2806 4950 4572 699 330 47 18 chrY 12422932 12423570 -39090014 - MER84-int LTR ERV1 -1114 3840 3304 1099 229 16 12 chrY 12423570 12423823 -39089761 + AluJo SINE Alu 55 308 -4 234 308 44 22 chrY 12423947 12424038 -39089546 - MIR SINE MIR -118 144 52 1971 71 114 11 chrY 12424359 12424639 -39088945 - AluSc SINE Alu 0 309 1 701 23 11 0 chrY 12425610 12425697 -39087887 + (TTTTC)n Simple_repeat Simple_repeat 3 90 0 391 129 114 0 chrY 12425977 12426047 -39087537 + MADE1 DNA Mariner 1 78 -2 204 218 13 77 chrY 12426428 12426506 -39087078 - L2 LINE L2 -78 3235 3163 1446 176 49 73 chrY 12427046 12427416 -39086168 - THE1C LTR MaLR 0 375 15 1065 239 70 16 chrY 12427433 12427802 -39085782 - L1MB7 LINE L1 -83 6101 5713 27 0 0 0 chrY 12427982 12428009 -39085575 + AT_rich Low_complexity Low_complexity 1 27 0 710 300 114 17 chrY 12428091 12428564 -39085020 - L1MC4 LINE L1 -142 7900 7382 8381 71 148 10 chrY 12429192 12430398 -39083186 - SVA Other Other -7 1379 8 189 0 0 0 chrY 12430408 12430429 -39083155 + (GGGAGA)n Simple_repeat Simple_repeat 5 25 0 747 204 22 11 chrY 12430494 12430675 -39082909 - MER20 DNA MER1_type -6 213 31 222 37 0 0 chrY 12431166 12431193 -39082391 + (TG)n Simple_repeat Simple_repeat 2 28 0 351 145 0 0 chrY 12431193 12431262 -39082322 + (TA)n Simple_repeat Simple_repeat 1 69 0 301 303 22 0 chrY 12431262 12431351 -39082233 + L1MC4 LINE L1 6613 6703 -1339 549 174 0 0 chrY 12431351 12431483 -39082101 + (TA)n Simple_repeat Simple_repeat 2 133 0 309 292 22 0 chrY 12431485 12431574 -39082010 - L1MC4 LINE L1 -1337 6705 6615 30 0 0 0 chrY 12431574 12431604 -39081980 + AT_rich Low_complexity Low_complexity 1 30 0 1940 147 0 0 chrY 12432107 12432431 -39081153 - AluSc SINE Alu 0 326 3 198 0 0 0 chrY 12432433 12432455 -39081129 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrY 12433286 12433308 -39080276 + (A)n Simple_repeat Simple_repeat 1 22 0 895 206 34 0 chrY 12433683 12433887 -39079697 - MER20 DNA MER1_type -8 211 1 23 0 0 0 chrY 12434553 12434576 -39079008 + AT_rich Low_complexity Low_complexity 1 23 0 2100 86 3 7 chrY 12434604 12434896 -39078688 + AluY SINE Alu 20 310 -1 2502 58 0 6 chrY 12434910 12435223 -39078361 + AluY SINE Alu 1 311 0 1391 231 156 65 chrY 12435294 12435896 -39077688 - L1MC4 LINE L1 -198 7844 7153 1613 177 7 10 chrY 12435896 12436184 -39077400 - AluJo SINE Alu 0 312 26 1391 231 156 65 chrY 12436184 12436364 -39077220 - L1MC4 LINE L1 -889 7153 6991 483 63 0 0 chrY 12436873 12436936 -39076648 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 370 283 178 13 chrY 12438202 12438354 -39075230 - MER5B DNA MER1_type 0 178 2 233 209 0 0 chrY 12438410 12438453 -39075131 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 356 0 0 chrY 12438935 12438994 -39074590 - MIR SINE MIR -71 137 79 498 169 90 0 chrY 12439314 12439403 -39074181 + AluJ/FLAM SINE Alu 3 99 -213 563 217 7 36 chrY 12439404 12439542 -39074042 + FRAM SINE Alu 1 40 0 392 138 0 15 chrY 12439642 12439707 -39073877 + MER20 DNA MER1_type 2 65 -154 22 0 0 0 chrY 12439973 12439995 -39073589 + AT_rich Low_complexity Low_complexity 1 22 0 251 273 16 0 chrY 12440504 12440584 -39073000 + MLT2C1 LTR ERVL 124 194 -203 278 263 12 25 chrY 12440584 12440664 -39072920 + GA-rich Low_complexity Low_complexity 2 80 0 238 135 0 0 chrY 12440830 12440867 -39072717 - MLT1E3 LTR MaLR -500 124 88 227 233 151 0 chrY 12440832 12440905 -39072679 - MLT2C1 LTR ERVL -296 101 18 * 1057 139 42 28 chrY 12440910 12441126 -39072458 - THE1C LTR MaLR -156 219 1 362 305 61 12 chrY 12441150 12441314 -39072270 - L1 LINE L1 -1793 4353 4182 40140 39 26 2 chrY 12441325 12447329 -39066255 + L1PA2 LINE L1 3 6155 0 1871 112 0 83 chrY 12447864 12448177 -39065407 - AluSc SINE Alu -22 287 1 285 154 0 31 chrY 12449127 12449192 -39064392 - MLT2B3 LTR ERVL 0 520 458 809 109 36 0 chrY 12449209 12449374 -39064210 + (TAGA)n Simple_repeat Simple_repeat 2 172 0 1673 231 24 50 chrY 12449431 12449972 -39063612 - MLT2B3 LTR ERVL -20 515 18 244 330 52 17 chrY 12450551 12450666 -39062918 + L2 LINE L2 3154 3272 0 1926 136 4 0 chrY 12450930 12451202 -39062382 + AluSc SINE Alu 1 273 -36 369 0 0 0 chrY 12451209 12451250 -39062334 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1340 199 30 24 chrY 12451342 12451451 -39062133 + AluJb SINE Alu 12 119 -193 276 30 0 0 chrY 12451451 12451484 -39062100 + (CA)n Simple_repeat Simple_repeat 2 34 0 1340 199 30 24 chrY 12451484 12451671 -39061913 + AluJb SINE Alu 119 310 -2 1871 112 0 83 chrY 12452139 12452452 -39061132 + AluSc SINE Alu 1 287 -22 40180 39 26 2 chrY 12452987 12458992 -39054592 - L1PA2 LINE L1 0 6155 3 362 305 61 12 chrY 12459003 12459167 -39054417 + L1 LINE L1 4182 4353 -1793 1057 139 42 28 chrY 12459191 12459407 -39054177 + THE1C LTR MaLR 1 219 -156 227 233 151 0 chrY 12459412 12459485 -39054099 + MLT2C1 LTR ERVL 18 101 -296 * 238 135 0 0 chrY 12459450 12459487 -39054097 + MLT1E3 LTR MaLR 88 124 -500 278 263 12 25 chrY 12459653 12459733 -39053851 + CT-rich Low_complexity Low_complexity 2 80 0 251 273 16 0 chrY 12459733 12459813 -39053771 - MLT2C1 LTR ERVL -203 194 124 22 0 0 0 chrY 12460322 12460344 -39053240 + AT_rich Low_complexity Low_complexity 1 22 0 392 138 0 15 chrY 12460610 12460675 -39052909 - MER20 DNA MER1_type -154 65 2 563 217 7 36 chrY 12460775 12460913 -39052671 - FRAM SINE Alu 0 40 1 498 169 90 0 chrY 12460914 12461003 -39052581 - AluJ/FLAM SINE Alu -213 99 3 200 356 0 0 chrY 12461323 12461382 -39052202 + MIR SINE MIR 79 137 -71 233 209 0 0 chrY 12461864 12461907 -39051677 + (CA)n Simple_repeat Simple_repeat 2 44 0 370 283 178 13 chrY 12461963 12462115 -39051469 + MER5B DNA MER1_type 2 178 0 483 63 0 0 chrY 12463381 12463444 -39050140 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1391 231 156 65 chrY 12463953 12464133 -39049451 + L1MC4 LINE L1 6991 7153 -889 1613 177 7 10 chrY 12464133 12464421 -39049163 + AluJo SINE Alu 26 312 0 1391 231 156 65 chrY 12464421 12465023 -39048561 + L1MC4 LINE L1 7153 7844 -198 2502 58 0 6 chrY 12465094 12465407 -39048177 - AluY SINE Alu 0 311 1 2100 86 3 7 chrY 12465421 12465713 -39047871 - AluY SINE Alu -1 310 20 23 0 0 0 chrY 12465741 12465764 -39047820 + AT_rich Low_complexity Low_complexity 1 23 0 895 206 34 0 chrY 12466430 12466634 -39046950 + MER20 DNA MER1_type 1 211 -8 198 0 0 0 chrY 12467009 12467031 -39046553 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrY 12467862 12467884 -39045700 + (A)n Simple_repeat Simple_repeat 1 22 0 1941 147 0 0 chrY 12467886 12468165 -39045419 + AluSc SINE Alu 3 326 0 385 22 0 0 chrY 12468165 12468210 -39045374 + (TAAA)n Simple_repeat Simple_repeat 2 96 0 30 0 0 0 chrY 12468713 12468743 -39044841 + AT_rich Low_complexity Low_complexity 1 30 0 * 422 129 12 0 chrY 12468719 12468804 -39044780 + (TA)n Simple_repeat Simple_repeat 2 87 0 309 292 22 0 chrY 12468743 12468832 -39044752 + L1MC4 LINE L1 6615 6705 -1337 * 885 161 0 0 chrY 12468834 12469093 -39044491 + (TA)n Simple_repeat Simple_repeat 1 259 0 24 32 0 0 chrY 12469093 12469124 -39044460 + AT_rich Low_complexity Low_complexity 1 31 0 222 37 0 0 chrY 12469124 12469151 -39044433 + (CA)n Simple_repeat Simple_repeat 2 28 0 747 204 22 11 chrY 12469642 12469823 -39043761 + MER20 DNA MER1_type 31 213 -6 189 0 0 0 chrY 12469888 12469909 -39043675 + (TCTCCC)n Simple_repeat Simple_repeat 5 25 0 8381 71 148 10 chrY 12469919 12471125 -39042459 + SVA Other Other 8 1379 -7 710 300 114 17 chrY 12471753 12472226 -39041358 + L1MC4 LINE L1 7382 7900 -142 27 0 0 0 chrY 12472308 12472335 -39041249 + AT_rich Low_complexity Low_complexity 1 27 0 1065 239 70 16 chrY 12472515 12472884 -39040700 + L1MB7 LINE L1 5713 6101 -83 1446 176 49 73 chrY 12472901 12473271 -39040313 + THE1C LTR MaLR 15 375 0 204 218 13 77 chrY 12473811 12473889 -39039695 + L2 LINE L2 3163 3235 -78 391 129 114 0 chrY 12474270 12474340 -39039244 - MADE1 DNA Mariner -2 78 1 701 23 11 0 chrY 12474620 12474707 -39038877 + (GAAAA)n Simple_repeat Simple_repeat 3 90 0 1971 71 114 11 chrY 12475678 12475958 -39037626 + AluSc SINE Alu 1 309 0 234 308 44 22 chrY 12476279 12476370 -39037214 + MIR SINE MIR 52 144 -118 1099 229 16 12 chrY 12476494 12476747 -39036837 - AluJo SINE Alu -4 308 55 699 330 47 18 chrY 12476747 12477385 -39036199 + HERVFH21 LTR ERV1 3304 4630 -1114 484 345 13 21 chrY 12477622 12478004 -39035580 + HERVFH21 LTR ERV1 4572 4950 -2806 427 245 49 86 chrY 12478415 12478660 -39034924 + HERVFH21 LTR ERV1 4733 4968 -1561 574 116 0 0 chrY 12478668 12478754 -39034830 - THE1A LTR MaLR -269 86 1 297 170 0 0 chrY 12478761 12478814 -39034770 - L1M1 LINE L1 -7400 165 113 1057 166 0 52 chrY 12478830 12479041 -39034543 + AluSg/x SINE Alu 113 312 0 1435 77 0 0 chrY 12479721 12479916 -39033668 - THE1A LTR MaLR -160 195 1 634 183 7 39 chrY 12479923 12480076 -39033508 - L1M1 LINE L1 -7400 165 18 345 91 36 0 chrY 12480090 12480145 -39033439 - L1 LINE L1 -1379 4767 4711 1377 174 33 7 chrY 12480153 12480429 -39033155 - Tigger1 DNA MER2_type -2135 283 1 3559 179 38 52 chrY 12480534 12481058 -39032526 + L1MA4 LINE L1 4492 5022 -1278 1702 144 4 22 chrY 12481058 12481336 -39032248 + AluSx SINE Alu 1 273 -39 3559 179 38 52 chrY 12481336 12481351 -39032233 + L1MA4 LINE L1 5022 5036 -1264 314 73 0 18 chrY 12481351 12481406 -39032178 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3559 179 38 52 chrY 12481406 12482426 -39031158 + L1MA4 LINE L1 5036 6020 -280 258 222 56 11 chrY 12482422 12482512 -39031072 + L1MB3 LINE L1 6087 6180 -3 * 1109 191 36 2 chrY 12483655 12484106 -39029478 - L1M2 LINE L1 -611 5689 5158 252 208 15 88 chrY 12484106 12484215 -39029369 + MLT2C1 LTR ERVL 260 430 -34 423 0 0 0 chrY 12484269 12484316 -39029268 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chrY 12484855 12484877 -39028707 + GC_rich Low_complexity Low_complexity 1 22 0 241 236 0 30 chrY 12485782 12485947 -39027637 + GA-rich Low_complexity Low_complexity 2 161 0 312 211 0 33 chrY 12485985 12486165 -39027419 + GA-rich Low_complexity Low_complexity 4 177 0 420 241 0 58 chrY 12486181 12486372 -39027212 + GA-rich Low_complexity Low_complexity 1 180 0 184 241 0 29 chrY 12486410 12486580 -39027004 + GA-rich Low_complexity Low_complexity 1 165 0 294 295 0 25 chrY 12486592 12486714 -39026870 + GA-rich Low_complexity Low_complexity 1 119 0 263 171 27 9 chrY 12487204 12487315 -39026269 + (TA)n Simple_repeat Simple_repeat 1 113 0 335 220 17 17 chrY 12487359 12487477 -39026107 + (TA)n Simple_repeat Simple_repeat 1 118 0 25 0 0 0 chrY 12488748 12488773 -39024811 + AT_rich Low_complexity Low_complexity 1 25 0 320 343 131 7 chrY 12490509 12490646 -39022938 - L2 LINE L2 -2 3270 3117 1967 163 0 3 chrY 12491943 12492249 -39021335 - AluSq SINE Alu -8 305 1 246 307 71 24 chrY 12492289 12492416 -39021168 + MER94 DNA DNA 2 134 0 290 337 90 6 chrY 12492924 12493102 -39020482 + MIR SINE MIR 44 236 -26 218 237 32 21 chrY 12493107 12493200 -39020384 + (CTA)n Simple_repeat Simple_repeat 1 94 0 1957 179 8 19 chrY 12493223 12493592 -39019992 + MLT1A1 LTR MaLR 1 365 0 1679 165 45 48 chrY 12493611 12493644 -39019940 - THE1C LTR MaLR 0 375 343 1714 178 0 0 chrY 12493644 12493925 -39019659 + AluSx SINE Alu 16 296 -16 1679 165 45 48 chrY 12493925 12494267 -39019317 - THE1C LTR MaLR -32 343 1 274 365 37 23 chrY 12494553 12494852 -39018732 + LTR16B LTR ERVL 37 339 -125 21 0 0 0 chrY 12494943 12494964 -39018620 + AT_rich Low_complexity Low_complexity 1 21 0 209 309 32 21 chrY 12495494 12495588 -39017996 - MIR SINE MIR -26 236 142 277 304 70 9 chrY 12495692 12495807 -39017777 - MIR SINE MIR -34 228 107 1885 174 10 58 chrY 12495808 12496205 -39017379 - MER83B LTR ERV1 0 378 1 769 225 34 10 chrY 12496205 12496414 -39017170 + L1MA1 LINE L1 18 231 -7334 2144 171 14 2 chrY 12496479 12496917 -39016667 + L1MA1 LINE L1 5515 5957 -1608 5639 160 20 14 chrY 12497088 12498117 -39015467 + L1MA1 LINE L1 5985 7031 -690 2043 122 0 13 chrY 12498117 12498420 -39015164 + AluY SINE Alu 1 299 -12 5639 160 20 14 chrY 12498420 12499115 -39014469 + L1MA1 LINE L1 7031 7720 -1 445 185 12 0 chrY 12499136 12499217 -39014367 - MIR SINE MIR -133 129 48 22 80 0 0 chrY 12499343 12499393 -39014191 + AT_rich Low_complexity Low_complexity 1 50 0 1856 163 3 0 chrY 12499613 12499896 -39013688 - AluSc SINE Alu -13 296 13 234 263 38 0 chrY 12500564 12500644 -39012940 + MARNA DNA Mariner 485 567 -19 22 0 0 0 chrY 12500696 12500718 -39012866 + AT_rich Low_complexity Low_complexity 1 22 0 2066 142 3 0 chrY 12501224 12501519 -39012065 - AluY SINE Alu -15 296 1 715 149 50 0 chrY 12502743 12502904 -39010680 - L1MA8 LINE L1 -3 6288 6120 291 264 14 0 chrY 12503162 12503234 -39010350 + MER45 DNA AcHobo 1 73 -880 326 214 8 103 chrY 12503242 12503306 -39010278 - MER45 DNA AcHobo -855 185 135 2519 56 0 0 chrY 12503306 12503634 -39009950 + AluY SINE Alu 1 311 0 326 214 8 103 chrY 12503634 12503686 -39009898 - MER45 DNA AcHobo -905 135 80 1692 168 22 32 chrY 12504157 12504526 -39009058 + MLT1A1 LTR MaLR 1 365 0 183 161 32 16 chrY 12504575 12504637 -39008947 + (TA)n Simple_repeat Simple_repeat 2 64 0 225 94 0 0 chrY 12505079 12505111 -39008473 + (T)n Simple_repeat Simple_repeat 1 32 0 214 383 92 0 chrY 12505983 12506124 -39007460 + L2 LINE L2 3117 3270 -2 209 284 75 0 chrY 12506272 12506339 -39007245 - L2 LINE L2 -12 3301 3230 691 229 0 0 chrY 12506384 12506515 -39007069 - FLAM_A SINE Alu -11 131 1 684 113 0 0 chrY 12506609 12506706 -39006878 + AluSc SINE Alu 1 97 -212 307 106 0 0 chrY 12506708 12506755 -39006829 - AluSq/x SINE Alu -161 142 96 1310 247 108 20 chrY 12508085 12508531 -39005053 - MLT1D LTR MaLR 0 505 21 220 336 36 18 chrY 12508737 12508847 -39004737 + L2 LINE L2 3197 3308 -5 370 319 56 0 chrY 12508850 12508994 -39004590 + MIR SINE MIR 40 191 -71 2149 132 0 6 chrY 12509539 12509850 -39003734 - AluY SINE Alu -2 309 1 1862 169 3 3 chrY 12510670 12510966 -39002618 - AluSx SINE Alu -16 296 1 319 266 44 9 chrY 12511520 12511633 -39001951 + L2 LINE L2 3197 3313 0 991 258 21 74 chrY 12511872 12512400 -39001184 + MLT1D LTR MaLR 1 500 -5 616 164 8 41 chrY 12513072 12513194 -39000390 + THE1C LTR MaLR 64 181 -194 32 0 0 0 chrY 12513465 12513497 -39000087 + AT_rich Low_complexity Low_complexity 1 32 0 678 274 6 0 chrY 12513611 12513779 -38999805 + MER45A DNA AcHobo 10 178 0 34 0 0 0 chrY 12516616 12516650 -38996934 + AT_rich Low_complexity Low_complexity 1 34 0 207 100 0 0 chrY 12516673 12516703 -38996881 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 765 308 85 6 chrY 12517163 12517527 -38996057 + MLT1J LTR MaLR 2 394 -117 283 276 29 29 chrY 12517595 12517700 -38995884 - MIR SINE MIR -88 174 70 25 0 0 0 chrY 12518917 12518942 -38994642 + AT_rich Low_complexity Low_complexity 1 25 0 887 235 66 5 chrY 12518942 12519138 -38994446 + AluJb SINE Alu 87 294 -18 225 143 0 0 chrY 12519602 12519637 -38993947 + U2 snRNA snRNA 1 35 -153 556 241 86 25 chrY 12520581 12520743 -38992841 - MER58A DNA MER1_type -16 208 37 253 209 9 136 chrY 12520777 12520887 -38992697 + MIR SINE MIR 117 212 -50 237 211 0 0 chrY 12522564 12522621 -38990963 + (TA)n Simple_repeat Simple_repeat 2 58 0 1708 157 0 47 chrY 12522710 12523028 -38990556 - AluSx SINE Alu -9 303 1 287 51 51 17 chrY 12523035 12523094 -38990490 + T-rich Low_complexity Low_complexity 1 61 0 34553 53 0 0 chrY 12523094 12528271 -38985313 - L1PA3 LINE L1 -24 6131 954 2287 160 20 33 chrY 12528872 12529328 -38984256 - Tigger2 DNA MER2_type -2 2716 2267 297 161 113 0 chrY 12529313 12529375 -38984209 - Tigger2 DNA MER2_type -2649 69 1 * 593 184 9 0 chrY 12529760 12529872 -38983712 + THE1B LTR MaLR 245 367 -8 697 208 52 7 chrY 12530681 12530835 -38982749 - MER20 DNA MER1_type -1 218 58 22553 61 24 3 chrY 12531000 12533915 -38979669 + L1P LINE L1 8 2984 -3162 97 42 0 18 chrY 12534801 12534966 -38978618 + AT_rich Low_complexity Low_complexity 1 162 0 313 342 7 39 chrY 12535203 12535358 -38978226 - L2 LINE L2 -8 3305 3156 234 325 33 86 chrY 12535469 12535620 -38977964 - MER91B DNA MER1_type -1 189 47 1358 183 0 106 chrY 12535661 12535973 -38977611 - AluJo SINE Alu -25 287 9 23 54 0 0 chrY 12536125 12536162 -38977422 + AT_rich Low_complexity Low_complexity 1 37 0 438 57 0 0 chrY 12536571 12536624 -38976960 + LTR46 LTR ERV1 1 53 -407 512 133 0 24 chrY 12536630 12536713 -38976871 + LTR46 LTR ERV1 1 81 -379 887 235 18 14 chrY 12537456 12537673 -38975911 + MER20 DNA MER1_type 2 219 0 774 121 0 50 chrY 12537713 12537853 -38975731 - L1PA8 LINE L1 -2 6170 6038 25 51 0 0 chrY 12537963 12538002 -38975582 + AT_rich Low_complexity Low_complexity 1 39 0 205 111 0 111 chrY 12538419 12538464 -38975120 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chrY 12538859 12538890 -38974694 + AT_rich Low_complexity Low_complexity 1 31 0 4364 207 51 42 chrY 12539146 12540286 -38973298 - L1MC1 LINE L1 -18 6315 5152 1729 184 3 3 chrY 12540286 12540591 -38972993 - AluSg SINE Alu -5 305 1 4364 207 51 42 chrY 12540591 12540990 -38972594 - L1MC1 LINE L1 -1181 5152 4758 22 94 0 0 chrY 12541947 12542011 -38971573 + AT_rich Low_complexity Low_complexity 1 64 0 183 316 70 80 chrY 12542256 12542443 -38971141 - MIR SINE MIR -77 185 1 3328 141 24 2 chrY 12542568 12543120 -38970464 + L1MA2 LINE L1 5741 6304 0 33 25 0 0 chrY 12543123 12543163 -38970421 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chrY 12543236 12543267 -38970317 + AT_rich Low_complexity Low_complexity 1 31 0 538 318 13 0 chrY 12543902 12544056 -38969528 + L2 LINE L2 1094 1249 -2065 503 294 31 19 chrY 12544099 12544259 -38969325 - MER5B DNA MER1_type -9 169 8 347 253 209 0 chrY 12544261 12544396 -38969188 - MER5A DNA MER1_type -18 171 4 765 241 76 38 chrY 12544400 12544716 -38968868 + L2 LINE L2 1305 1632 -1682 582 63 0 0 chrY 12544769 12544848 -38968736 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 269 106 0 21 chrY 12544896 12544943 -38968641 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 529 201 29 0 chrY 12544973 12545112 -38968472 + GA-rich Low_complexity Low_complexity 2 144 0 332 218 73 48 chrY 12545141 12545265 -38968319 + L2 LINE L2 1846 1972 -1342 254 324 103 16 chrY 12545831 12546276 -38967308 - HAL1 LINE L1 -20 2487 2004 572 325 94 22 chrY 12546342 12546702 -38966882 - HAL1 LINE L1 -621 1886 1501 1921 152 0 0 chrY 12546703 12547021 -38966563 - AluSc SINE Alu 0 321 4 406 317 80 43 chrY 12547094 12547394 -38966190 + HAL1 LINE L1 652 962 -1545 181 307 27 27 chrY 12549294 12549369 -38964215 - L2 LINE L2 -62 3210 3136 1748 187 121 23 chrY 12549448 12549838 -38963746 + MSTA LTR MaLR 1 428 0 1545 175 38 67 chrY 12550195 12550251 -38963333 + MLT1A1 LTR MaLR 1 57 -308 1331 201 12 75 chrY 12550251 12550584 -38963000 + AluJb SINE Alu 1 312 0 1545 175 38 67 chrY 12550584 12550899 -38962685 + MLT1A1 LTR MaLR 57 361 -4 261 241 152 62 chrY 12551112 12551224 -38962360 - MIR SINE MIR -108 154 33 2266 84 0 0 chrY 12551894 12552179 -38961405 + AluY SINE Alu 1 285 -26 22 35 0 0 chrY 12552179 12552208 -38961376 + AT_rich Low_complexity Low_complexity 1 29 0 1999 133 4 0 chrY 12552868 12553194 -38960390 + AluSc SINE Alu 1 327 0 586 264 19 0 chrY 12553516 12553671 -38959913 + L1ME LINE L1 5547 5704 -466 312 338 113 0 chrY 12553923 12554056 -38959528 - MIR SINE MIR -47 215 68 795 338 107 40 chrY 12554146 12555040 -38958544 - L2 LINE L2 -271 3042 2087 25 0 0 0 chrY 12555180 12555205 -38958379 + AT_rich Low_complexity Low_complexity 1 25 0 292 226 0 28 chrY 12556496 12556602 -38956982 + CT-rich Low_complexity Low_complexity 4 106 0 506 255 219 20 chrY 12556646 12556842 -38956742 - MER21B LTR ERV1 -609 254 20 385 43 0 0 chrY 12556967 12557014 -38956570 + THE1A LTR MaLR 1 47 -308 * 814 184 0 0 chrY 12557010 12557146 -38956438 + THE1A LTR MaLR 220 355 0 10072 142 7 2 chrY 12557146 12558719 -38954865 + THE1A-int LTR MaLR 1 1580 0 2155 148 32 0 chrY 12558719 12559063 -38954521 + THE1A LTR MaLR 1 355 0 265 250 0 48 chrY 12559367 12559451 -38954133 + CT-rich Low_complexity Low_complexity 3 82 0 696 45 0 0 chrY 12559501 12559589 -38953995 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 2213 133 14 8 chrY 12559768 12560121 -38953463 + THE1A LTR MaLR 1 355 0 1734 166 21 0 chrY 12561140 12561429 -38952155 + AluSp SINE Alu 5 299 -14 183 129 0 0 chrY 12561669 12561700 -38951884 + (CA)n Simple_repeat Simple_repeat 2 32 0 294 29 0 0 chrY 12561706 12561741 -38951843 + (TG)n Simple_repeat Simple_repeat 1 35 0 1373 195 11 25 chrY 12561783 12561969 -38951615 + AluSx SINE Alu 7 189 -123 3002 203 29 83 chrY 12561969 12562993 -38950591 + LTR5 LTR ERVK 1 969 0 1373 195 11 25 chrY 12562993 12563083 -38950501 + AluSx SINE Alu 189 279 -33 251 54 27 0 chrY 12563088 12563125 -38950459 + (CAA)n Simple_repeat Simple_repeat 2 39 0 188 234 0 16 chrY 12564794 12564858 -38948726 + CT-rich Low_complexity Low_complexity 1 63 0 325 203 14 29 chrY 12564859 12564928 -38948656 - L1MC4a LINE L1 -1715 6093 6026 343 148 0 25 chrY 12564954 12565035 -38948549 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 583 177 22 22 chrY 12565036 12565270 -38948314 + CT-rich Low_complexity Low_complexity 1 234 0 243 287 35 0 chrY 12565330 12565417 -38948167 + MER102a DNA MER1_type 241 330 0 29 0 0 0 chrY 12566017 12566046 -38947538 + AT_rich Low_complexity Low_complexity 1 29 0 383 153 28 0 chrY 12566276 12566348 -38947236 - MER20 DNA MER1_type -144 75 2 510 262 37 25 chrY 12566580 12566747 -38946837 + MER5B DNA MER1_type 10 189 0 483 324 72 83 chrY 12567119 12567731 -38945853 - HAL1b LINE L1 -690 658 54 459 289 16 8 chrY 12568625 12568753 -38944831 - MIR SINE MIR -37 225 97 420 312 64 6 chrY 12569292 12569449 -38944135 + MIR SINE MIR 60 225 -37 1222 306 37 27 chrY 12569504 12570020 -38943564 + LTR26 LTR ERV1 68 588 -15 2013 152 0 0 chrY 12570768 12571051 -38942533 - AluSq SINE Alu -24 289 7 547 113 0 0 chrY 12571945 12572025 -38941559 + MADE1 DNA Mariner 1 80 0 196 337 43 33 chrY 12573557 12573649 -38939935 + MIR SINE MIR 35 127 -81 450 267 121 0 chrY 12573852 12573968 -38939616 + FLAM_C SINE Alu 1 130 -3 770 235 8 51 chrY 12574092 12574326 -38939258 + MER58A DNA MER1_type 1 224 0 180 274 95 21 chrY 12574530 12574625 -38938959 - MER5A DNA MER1_type 0 189 88 314 306 52 46 chrY 12575289 12575462 -38938122 - HAL1 LINE L1 -776 1731 1558 2344 120 31 6 chrY 12575896 12576246 -38937338 - THE1B LTR MaLR -5 359 1 3269 114 16 8 chrY 12577160 12577669 -38935915 + LTR10D LTR ERV1 1 513 0 1741 194 0 0 chrY 12577925 12578219 -38935365 - AluSx SINE Alu -18 294 1 218 197 30 15 chrY 12578343 12578409 -38935175 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 1409 195 3 36 chrY 12579410 12579712 -38933872 - AluJo SINE Alu -20 292 1 225 171 71 0 chrY 12580089 12580159 -38933425 + (TTAA)n Simple_repeat Simple_repeat 2 76 0 880 318 73 46 chrY 12580685 12582187 -38931397 + L1ME LINE L1 270 1812 -4584 677 275 120 12 chrY 12582235 12582738 -38930846 + L1ME LINE L1 5033 5602 -633 7258 69 22 1 chrY 12582738 12584437 -38929147 + L1PA5 LINE L1 4437 6152 -2 252 182 0 0 chrY 12584716 12584760 -38928824 + MER3 DNA MER1_type 3 46 -163 271 262 71 0 chrY 12584790 12584874 -38928710 + MER3 DNA MER1_type 120 209 0 264 267 10 69 chrY 12585027 12585128 -38928456 + MER20 DNA MER1_type 32 126 -93 803 224 0 34 chrY 12586355 12586534 -38927050 - FRAM SINE Alu -6 170 1 886 204 68 171 chrY 12587029 12587614 -38925970 + LTR12 LTR ERV1 1 478 -236 * 51279 140 18 13 chrY 12587588 12593983 -38919601 + HERV9 LTR ERV1 54 6505 -1894 2078 105 41 10 chrY 12593983 12594277 -38919307 - AluY SINE Alu -8 303 1 51279 140 18 13 chrY 12594277 12596183 -38917401 + HERV9 LTR ERV1 6505 8399 0 1564 169 50 55 chrY 12596183 12596601 -38916983 + LTR12 LTR ERV1 1 480 -234 227 273 60 33 chrY 12596660 12596810 -38916774 + L1ME LINE L1 5617 5770 -420 510 372 19 12 chrY 12597974 12598232 -38915352 + MIR SINE MIR 3 262 0 412 229 78 54 chrY 12598949 12599024 -38914560 + Charlie8 DNA MER1_type 34 106 -224 2132 99 3 32 chrY 12599024 12599336 -38914248 + AluY SINE Alu 3 305 -6 412 229 78 54 chrY 12599336 12599465 -38914119 + Charlie8 DNA MER1_type 106 243 -87 459 316 35 44 chrY 12599547 12599775 -38913809 - MIR SINE MIR -32 230 5 2166 130 27 14 chrY 12600921 12601291 -38912293 + THE1C LTR MaLR 1 375 0 1442 282 20 5 chrY 12601440 12601830 -38911754 - MSTD LTR MaLR 0 396 1 298 306 57 19 chrY 12602060 12602269 -38911315 + L1M4 LINE L1 4962 5178 -968 262 272 114 0 chrY 12602321 12602435 -38911149 + MLT1I LTR MaLR 5 131 -278 1113 194 54 60 chrY 12605202 12605449 -38908135 - MER96B DNA MER1_type? -69 348 102 2669 129 11 5 chrY 12605449 12605883 -38907701 + L1PA13 LINE L1 5724 6160 -3 1113 194 54 60 chrY 12605883 12605985 -38907599 - MER96B DNA MER1_type? -315 102 1 219 275 38 38 chrY 12606352 12606432 -38907152 - L2 LINE L2 0 3313 3234 209 363 50 0 chrY 12606716 12606796 -38906788 - L2 LINE L2 -516 2798 2715 2786 208 6 9 chrY 12606960 12607489 -38906095 - MER1A DNA MER1_type 0 527 1 230 259 49 0 chrY 12607605 12607686 -38905898 - L1MA9 LINE L1 -5 6307 6223 330 288 8 25 chrY 12607694 12607812 -38905772 - L1MC4 LINE L1 -1339 6703 6588 262 115 26 39 chrY 12607812 12607890 -38905694 + (TA)n Simple_repeat Simple_repeat 1 77 0 419 277 8 17 chrY 12608801 12608920 -38904664 + MIR SINE MIR 97 214 -48 22 0 0 0 chrY 12608999 12609021 -38904563 + AT_rich Low_complexity Low_complexity 1 22 0 2870 6 0 0 chrY 12609478 12609789 -38903795 - AluYa5 SINE Alu 0 311 1 2042 145 0 3 chrY 12610453 12610750 -38902834 - AluSg SINE Alu -14 296 1 9991 191 33 35 chrY 12610953 12614411 -38899173 - L1MA6 LINE L1 0 6300 2837 1894 247 22 21 chrY 12614410 12615125 -38898459 + L1M1 LINE L1 3474 4192 -3373 * 1695 181 0 14 chrY 12615125 12615459 -38898125 + AluSx SINE Alu 1 330 0 1894 247 22 21 chrY 12615459 12615488 -38898096 + L1M1 LINE L1 4192 4219 -3346 381 374 36 12 chrY 12615949 12616198 -38897386 + MIR SINE MIR 6 260 -2 25 0 0 0 chrY 12617706 12617731 -38895853 + AT_rich Low_complexity Low_complexity 1 25 0 658 232 7 26 chrY 12618346 12618497 -38895087 + MER20 DNA MER1_type 16 163 -56 338 224 30 0 chrY 12618578 12618645 -38894939 - Charlie8 DNA MER1_type -4 2413 2345 1857 167 7 7 chrY 12619069 12619374 -38894210 + AluSq SINE Alu 1 305 -8 21 36 0 0 chrY 12619408 12619436 -38894148 + AT_rich Low_complexity Low_complexity 1 28 0 200 122 24 0 chrY 12620950 12620991 -38892593 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 31 0 0 chrY 12621454 12621486 -38892098 + AT_rich Low_complexity Low_complexity 1 32 0 243 330 83 49 chrY 12622069 12622443 -38891141 - L2 LINE L2 -166 3106 2716 345 217 70 85 chrY 12622446 12622557 -38891027 + LTR28 LTR ERV1 2 87 -338 2862 3 0 0 chrY 12622557 12622865 -38890719 + AluYa5 SINE Alu 1 308 -3 345 217 70 85 chrY 12622865 12622918 -38890666 + LTR28 LTR ERV1 87 139 -286 1173 208 106 97 chrY 12622919 12623567 -38890017 + LTR28 LTR ERV1 109 950 -70 283 271 279 8 chrY 12623610 12623732 -38889852 + LTR28 LTR ERV1 866 1020 0 2102 201 50 2 chrY 12623808 12624246 -38889338 + LOR1b LTR ERV1 1 459 -2 286 89 62 36 chrY 12624515 12624627 -38888957 + (TA)n Simple_repeat Simple_repeat 2 116 0 248 167 37 0 chrY 12625048 12625102 -38888482 + L1MC4 LINE L1 6648 6703 -1339 225 0 0 0 chrY 12625400 12625425 -38888159 + (T)n Simple_repeat Simple_repeat 1 25 0 2761 16 0 3 chrY 12625877 12626184 -38887400 + AluYb8 SINE Alu 1 306 -12 2230 114 0 0 chrY 12626204 12626502 -38887082 + AluY SINE Alu 1 298 -13 1175 224 0 34 chrY 12627345 12627608 -38885976 - AluJo SINE Alu -16 296 43 1818 165 0 20 chrY 12628697 12629000 -38884584 + AluSx SINE Alu 9 305 -7 1301 211 21 31 chrY 12629217 12629506 -38884078 - AluJo SINE Alu -24 288 3 358 337 29 5 chrY 12629540 12629745 -38883839 - L1ME3 LINE L1 -8 6154 5945 509 221 12 14 chrY 12629890 12630238 -38883346 + GA-rich Low_complexity Low_complexity 1 347 0 265 246 29 23 chrY 12630254 12630425 -38883159 + GA-rich Low_complexity Low_complexity 4 175 0 281 287 80 48 chrY 12631745 12631933 -38881651 + LTR16C LTR ERVL 127 320 -171 1802 177 0 0 chrY 12632311 12632599 -38880985 - AluSx SINE Alu -24 288 1 259 278 11 67 chrY 12632809 12632899 -38880685 + L2 LINE L2 3187 3271 -1 537 277 7 0 chrY 12633035 12633176 -38880408 - MER3 DNA MER1_type 0 209 68 23 33 0 0 chrY 12633329 12633359 -38880225 + AT_rich Low_complexity Low_complexity 1 30 0 1684 195 30 0 chrY 12633570 12633873 -38879711 + AluSx SINE Alu 1 312 0 5255 144 96 0 chrY 12633965 12634957 -38878627 - L1PA8 LINE L1 -2 6170 5152 33875 118 8 14 chrY 12634995 12641169 -38872415 + L1PA6 LINE L1 13 6146 -8 258 259 173 7 chrY 12642172 12642311 -38871273 - L2 LINE L2 -18 3295 3134 436 158 10 10 chrY 12643364 12643465 -38870119 + CT-rich Low_complexity Low_complexity 2 102 0 1039 241 55 0 chrY 12645258 12645511 -38868073 - AluJo SINE Alu -22 290 24 393 268 116 20 chrY 12645627 12645825 -38867759 + L1MC4a LINE L1 5779 5995 -1813 312 200 0 0 chrY 12645960 12646030 -38867554 + L1MC4a LINE L1 7656 7725 -83 1303 273 89 25 chrY 12646097 12646783 -38866801 + L1ME2 LINE L1 5362 6098 -66 267 324 177 47 chrY 12647613 12647912 -38865672 + L3 LINE CR1 152 489 -1088 24 53 0 0 chrY 12648153 12648191 -38865393 + AT_rich Low_complexity Low_complexity 1 38 0 1664 210 47 26 chrY 12649493 12649922 -38863662 - L1MC3 LINE L1 -19 7766 7329 210 273 0 26 chrY 12649922 12649999 -38863585 + T-rich Low_complexity Low_complexity 2 76 0 804 162 0 0 chrY 12650063 12650180 -38863404 - FRAM SINE Alu -24 152 36 60 73 0 0 chrY 12650451 12650574 -38863010 + AT_rich Low_complexity Low_complexity 1 123 0 864 210 29 147 chrY 12651016 12651114 -38862470 + MLT2D LTR ERVL 6 114 -300 612 241 0 0 chrY 12651114 12651247 -38862337 - L1MA2 LINE L1 0 6304 6172 864 210 29 147 chrY 12651247 12651557 -38862027 + MLT2D LTR ERVL 114 366 -48 273 135 0 0 chrY 12651562 12651614 -38861970 + (TG)n Simple_repeat Simple_repeat 1 52 0 1099 259 29 38 chrY 12652351 12652694 -38860890 - MER58B DNA MER1_type 0 341 2 2641 35 0 0 chrY 12652919 12653233 -38860351 - L1PA3 LINE L1 -469 5686 5373 3822 33 0 0 chrY 12653233 12653690 -38859894 + L1PA3 LINE L1 5699 6155 0 1366 211 0 7 chrY 12653804 12654083 -38859501 - AluJb SINE Alu 0 312 36 1920 152 48 25 chrY 12654864 12655220 -38858364 - THE1B LTR MaLR 0 364 1 209 174 0 65 chrY 12655385 12655431 -38858153 + L2 LINE L2 3267 3309 -4 560 283 116 41 chrY 12656175 12656614 -38856970 - L1ME4a LINE L1 -54 6067 5596 198 0 0 0 chrY 12657061 12657083 -38856501 + (A)n Simple_repeat Simple_repeat 1 22 0 537 144 18 27 chrY 12657414 12657525 -38856059 - L1MA10 LINE L1 -4 6330 6221 2208 181 5 34 chrY 12657734 12658181 -38855403 - L1PB1 LINE L1 -9 6142 5709 1114 310 108 3 chrY 12658294 12658869 -38854715 + L1ME3A LINE L1 5446 6080 -90 1315 212 58 0 chrY 12658899 12659317 -38854267 + AluJo SINE Alu 11 444 0 312 146 0 0 chrY 12659317 12659365 -38854219 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 763 168 15 19 chrY 12659366 12659635 -38853949 + GA-rich Low_complexity Low_complexity 1 268 0 1153 117 4 18 chrY 12661228 12661592 -38851992 + (TTC)n Simple_repeat Simple_repeat 1 540 0 794 201 2 10 chrY 12661594 12661970 -38851614 + CT-rich Low_complexity Low_complexity 1 373 0 240 35 0 0 chrY 12662006 12662035 -38851549 + (TTG)n Simple_repeat Simple_repeat 2 30 0 * 695 126 0 8 chrY 12662033 12662152 -38851432 + (TTC)n Simple_repeat Simple_repeat 3 120 0 1256 211 126 0 chrY 12662264 12662525 -38851059 + AluJb SINE Alu 5 298 -4 1015 308 85 47 chrY 12662635 12663232 -38850352 + L2 LINE L2 1822 2441 -873 812 275 82 9 chrY 12663460 12663878 -38849706 - L1M4 LINE L1 -1728 4418 3975 1516 199 39 30 chrY 12663881 12664242 -38849342 + THE1B LTR MaLR 1 364 0 251 288 0 0 chrY 12664968 12665034 -38848550 + AluJ SINE Alu 66 131 -171 1517 177 40 40 chrY 12666860 12667233 -38846351 - THE1C LTR MaLR -2 373 1 19716 143 17 15 chrY 12667812 12674227 -38839357 + L1PA8 LINE L1 6 6466 -21 228 240 21 10 chrY 12674228 12674324 -38839260 + (TA)n Simple_repeat Simple_repeat 1 97 0 363 224 50 40 chrY 12674334 12674535 -38839049 + L1M4 LINE L1 5143 5345 -801 363 60 0 0 chrY 12676436 12676486 -38837098 + (TATG)n Simple_repeat Simple_repeat 2 51 0 761 189 50 142 chrY 12676505 12676906 -38836678 - MLT1A1 LTR MaLR 0 365 2 550 58 23 0 chrY 12676914 12677001 -38836583 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 416 265 0 0 chrY 12677017 12677119 -38836465 - MLT2C1 LTR ERVL -48 349 248 534 225 189 28 chrY 12677292 12677541 -38836043 + LTR50 LTR ERVL 1 289 -506 476 100 0 0 chrY 12678260 12678363 -38835221 + Alu SINE Alu 220 322 0 316 257 111 47 chrY 12678833 12679004 -38834580 - MIR SINE MIR -49 213 32 1483 230 21 0 chrY 12679201 12679484 -38834100 - AluJo SINE Alu -22 290 2 931 192 0 23 chrY 12679524 12679701 -38833883 + AluJ SINE Alu 138 310 -2 186 343 14 14 chrY 12679774 12679844 -38833740 + L2 LINE L2 3015 3084 -188 1602 155 0 0 chrY 12680732 12680971 -38832613 + AluSc SINE Alu 51 289 -20 180 0 0 0 chrY 12680972 12680992 -38832592 + (TA)n Simple_repeat Simple_repeat 1 20 0 305 175 36 23 chrY 12680992 12681075 -38832509 - L1MC4 LINE L1 -1339 6983 1992 307 131 33 0 chrY 12681982 12682043 -38831541 - MLT2B1 LTR ERVL 0 520 458 448 59 29 0 chrY 12682043 12682111 -38831473 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 1903 213 46 64 chrY 12682118 12682662 -38830922 - MLT2B3 LTR ERVL -20 534 1 2106 103 10 17 chrY 12683013 12683304 -38830280 + AluY SINE Alu 3 291 -20 285 51 0 0 chrY 12683885 12683924 -38829660 + (TC)n Simple_repeat Simple_repeat 2 40 0 2068 139 5 49 chrY 12684125 12684536 -38829048 + MER31A LTR ERV1 1 393 -92 402 198 10 0 chrY 12684660 12684756 -38828828 + MER31A LTR ERV1 388 484 -1 2605 116 57 7 chrY 12685852 12686275 -38827309 + MLT2A1 LTR ERVL 1 444 0 2004 158 0 0 chrY 12686367 12686664 -38826920 + AluSx SINE Alu 1 297 -15 1984 169 0 0 chrY 12687641 12687943 -38825641 - AluSx SINE Alu -6 306 5 655 251 42 0 chrY 12688104 12688271 -38825313 - MER20 DNA MER1_type -9 210 37 1529 248 3 0 chrY 12688851 12689162 -38824422 - AluJb SINE Alu 0 312 1 289 339 88 10 chrY 12689330 12689551 -38824033 + MIR SINE MIR 22 256 -6 230 133 17 17 chrY 12689860 12689876 -38823708 - L1MA10 LINE L1 0 6334 6319 691 268 74 4 chrY 12689876 12690107 -38823477 - L1ME1 LINE L1 -7 6159 5913 294 179 0 0 chrY 12690111 12690167 -38823417 + Alu SINE Alu 243 298 -2 1482 122 22 22 chrY 12690393 12690664 -38822920 + L1MA8 LINE L1 6013 6283 -8 272 292 15 0 chrY 12691034 12691099 -38822485 + L2 LINE L2 3207 3272 0 25 31 0 0 chrY 12692579 12692611 -38820973 + AT_rich Low_complexity Low_complexity 1 32 0 1629 193 10 7 chrY 12692749 12693044 -38820540 + AluSx SINE Alu 1 296 -16 552 257 243 27 chrY 12693414 12693710 -38819874 + L2 LINE L2 2131 2490 -824 395 300 70 51 chrY 12693734 12693991 -38819593 - HERVL LTR ERVL -2048 2948 2687 298 328 37 0 chrY 12694124 12694318 -38819266 - HERVL LTR ERVL -2994 2491 2286 302 353 0 0 chrY 12694609 12694725 -38818859 - HERVL LTR ERVL -3165 1831 1716 1213 241 0 0 chrY 12695428 12695673 -38817911 + AluJo SINE Alu 44 288 -24 2039 114 50 0 chrY 12695736 12696053 -38817531 - LTR10C LTR ERV1 0 591 259 15143 54 1 5 chrY 12696066 12698791 -38814793 - L1PA4 LINE L1 -8 6147 3430 13808 146 17 37 chrY 12698793 12701862 -38811722 + L1PA4 LINE L1 732 3740 -2721 904 230 14 23 chrY 12702147 12702364 -38811220 - MER20 DNA MER1_type 0 219 5 242 206 15 0 chrY 12702546 12702614 -38810970 + (TA)n Simple_repeat Simple_repeat 1 69 0 1832 218 36 32 chrY 12702774 12703241 -38810343 - MER21B LTR ERV1 -61 802 334 2132 145 16 26 chrY 12703299 12703678 -38809906 + THE1C LTR MaLR 1 375 0 292 203 0 14 chrY 12703683 12703752 -38809832 - MER21B LTR ERV1 -548 315 248 919 241 82 47 chrY 12703752 12704093 -38809491 + MLT1A1 LTR MaLR 1 353 -12 545 336 22 9 chrY 12704104 12704333 -38809251 - MER21B LTR ERV1 -609 254 23 314 292 19 28 chrY 12704684 12704811 -38808773 + CT-rich Low_complexity Low_complexity 1 125 0 1603 174 70 4 chrY 12704959 12705229 -38808355 + AluSg SINE Alu 1 288 -22 243 257 14 14 chrY 12707055 12707129 -38806455 - MLT2F LTR ERVL -173 490 417 230 383 31 26 chrY 12707166 12707393 -38806191 - MLT2F LTR ERVL -206 457 230 1555 218 50 2 chrY 12707492 12707878 -38805706 - LTR39 LTR ERV1 0 783 295 1147 193 39 32 chrY 12708042 12708322 -38805262 - LTR39 LTR ERV1 -501 282 1 276 286 0 0 chrY 12708334 12708397 -38805187 - MLT2E LTR ERVL -524 104 42 464 309 49 58 chrY 12710461 12710684 -38802900 + MIR SINE MIR 13 233 -29 37964 71 4 1 chrY 12711062 12717087 -38796497 + L1PA4 LINE L1 104 6150 -5 198 396 73 0 chrY 12718029 12718125 -38795459 + L2 LINE L2 3116 3218 -54 316 296 64 63 chrY 12718365 12718472 -38795112 + MIR SINE MIR 3 108 -154 505 258 96 34 chrY 12718472 12718650 -38794934 + MER5A DNA MER1_type 1 189 0 316 296 64 63 chrY 12718650 12718765 -38794819 + MIR SINE MIR 108 224 -38 276 30 0 0 chrY 12718881 12718914 -38794670 + (TA)n Simple_repeat Simple_repeat 1 33 0 928 254 9 0 chrY 12718967 12719180 -38794404 + MER20 DNA MER1_type 1 215 -4 1930 162 19 50 chrY 12722156 12722532 -38791052 - THE1B LTR MaLR 0 364 1 25 0 0 0 chrY 12722541 12722566 -38791018 + AT_rich Low_complexity Low_complexity 1 25 0 1990 194 28 44 chrY 12722879 12723313 -38790271 + MSTC LTR MaLR 2 428 0 428 230 158 53 chrY 12723416 12723568 -38790016 - MER5A DNA MER1_type 0 189 22 627 294 107 3 chrY 12723583 12723760 -38789824 - MER58B DNA MER1_type -2079 341 184 1502 188 56 17 chrY 12723760 12724048 -38789536 - AluJb SINE Alu -3 309 11 627 294 107 3 chrY 12724048 12724179 -38789405 - MER58B DNA MER1_type -2236 184 1 266 238 0 0 chrY 12724949 12725012 -38788572 - HsTC2 DNA Tc2 -6 1892 1830 342 0 0 0 chrY 12725028 12725066 -38788518 + (CA)n Simple_repeat Simple_repeat 1 38 0 345 279 99 15 chrY 12725432 12725749 -38787835 - MLT1J1 LTR MaLR -73 377 30 1671 130 17 0 chrY 12725927 12726165 -38787419 - AluSx SINE Alu -11 301 60 23 0 0 0 chrY 12726948 12726971 -38786613 + AT_rich Low_complexity Low_complexity 1 23 0 1473 114 0 5 chrY 12726971 12727191 -38786393 - L1PA7 LINE L1 -7 6147 5929 4896 63 5 5 chrY 12727197 12728087 -38785497 + L1PA7 LINE L1 5032 5923 -231 4033 205 38 21 chrY 12728095 12729997 -38783587 + L1MB2 LINE L1 4223 6169 -2 264 293 114 0 chrY 12730959 12731082 -38782502 - LTR16C LTR ERVL 0 491 355 770 218 31 59 chrY 12731094 12731283 -38782301 - MER33 DNA MER1_type -2273 312 134 1770 119 43 11 chrY 12731283 12731560 -38782024 - AluSq SINE Alu -27 286 1 770 218 31 59 chrY 12731560 12731691 -38781893 - MER33 DNA MER1_type -2451 134 1 206 337 117 29 chrY 12732096 12732301 -38781283 - L3b LINE CR1 -116 1467 1245 22 35 0 0 chrY 12733736 12733765 -38779819 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrY 12734188 12734216 -38779368 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chrY 12734254 12734295 -38779289 + (TTTAA)n Simple_repeat Simple_repeat 1 41 0 1899 121 13 0 chrY 12734296 12734602 -38778982 - L1PA10 LINE L1 -21 6147 5838 229 343 116 17 chrY 12735352 12735524 -38778060 - MIR SINE MIR -71 191 3 1637 204 7 18 chrY 12735825 12736110 -38777474 - AluJo SINE Alu -30 282 1 14107 117 70 34 chrY 12737909 12741657 -38771927 + HERV9 LTR ERV1 17 2438 0 9964 100 85 45 chrY 12741657 12744634 -38768950 + HERV9 LTR ERV1 514 2438 0 185 191 0 21 chrY 12744842 12744889 -38768695 + (TA)n Simple_repeat Simple_repeat 1 46 0 2513 119 3 0 chrY 12745102 12745456 -38768128 + THE1A LTR MaLR 1 355 0 10254 127 5 29 chrY 12745460 12745840 -38767744 + THE1A-int LTR MaLR 5 393 -1187 2247 113 0 13 chrY 12745840 12746150 -38767434 + AluY SINE Alu 1 306 -5 10254 127 5 29 chrY 12746150 12747384 -38766200 + THE1A-int LTR MaLR 393 1580 0 1344 130 36 70 chrY 12747384 12747786 -38765798 + THE1A LTR MaLR 1 355 0 480 306 21 58 chrY 12747790 12747860 -38765724 - L1ME LINE L1 -439 5723 5652 2141 130 0 3 chrY 12747860 12748161 -38765423 + AluY SINE Alu 1 300 -11 480 306 21 58 chrY 12748161 12748472 -38765112 - L1ME LINE L1 -510 5652 5356 2271 94 0 0 chrY 12748909 12749196 -38764388 + AluY SINE Alu 1 287 -24 1074 195 76 0 chrY 12749358 12749413 -38764171 - L1PB4 LINE L1 -308 5848 5799 306 73 0 0 chrY 12749413 12749454 -38764130 + (TG)n Simple_repeat Simple_repeat 2 42 0 1074 195 76 0 chrY 12749454 12749649 -38763935 - L1PB4 LINE L1 -357 5799 5579 820 117 8 17 chrY 12749649 12749769 -38763815 + AluSg/x SINE Alu 168 286 -23 1435 154 0 0 chrY 12749772 12750032 -38763552 - L1PB4 LINE L1 -570 5586 5327 786 259 47 0 chrY 12750211 12750404 -38763180 + MER58A DNA MER1_type 6 207 -17 725 205 16 16 chrY 12751256 12751646 -38761938 + CT-rich Low_complexity Low_complexity 1 390 0 1700 207 35 0 chrY 12752169 12752546 -38761038 + MLT1B LTR MaLR 1 390 0 409 176 15 0 chrY 12752853 12752921 -38760663 - Alu SINE Alu -14 297 229 1924 133 0 7 chrY 12754148 12754457 -38759127 + AluY SINE Alu 1 307 0 426 333 98 40 chrY 12755891 12756269 -38757315 + HAL1 LINE L1 2 401 -2106 369 109 0 0 chrY 12756354 12756409 -38757175 + (CACGA)n Simple_repeat Simple_repeat 4 58 0 686 245 96 40 chrY 12756439 12756814 -38756770 - L1MEc LINE L1 -5141 1255 860 22 0 0 0 chrY 12757274 12757296 -38756288 + AT_rich Low_complexity Low_complexity 1 22 0 294 228 40 0 chrY 12758746 12758847 -38754737 - Charlie2 DNA MER1_type -28 2834 2730 222 62 0 0 chrY 12758854 12758886 -38754698 + (TC)n Simple_repeat Simple_repeat 2 33 0 214 156 31 0 chrY 12758885 12758949 -38754635 + (TA)n Simple_repeat Simple_repeat 1 66 0 * 23 92 0 0 chrY 12758964 12759029 -38754555 + AT_rich Low_complexity Low_complexity 1 65 0 2655 184 60 9 chrY 12759205 12759787 -38753797 - L1MC1 LINE L1 -178 6155 5544 225 292 42 0 chrY 12759793 12759865 -38753719 + L2 LINE L2 3227 3301 -12 601 272 12 19 chrY 12759880 12760042 -38753542 - MER5A DNA MER1_type -28 161 1 652 192 275 11 chrY 12760425 12760701 -38752883 - L1MC4 LINE L1 -215 7827 7479 377 273 22 98 chrY 12761460 12761643 -38751941 + MIR SINE MIR 28 196 -66 28 48 0 0 chrY 12762038 12762080 -38751504 + AT_rich Low_complexity Low_complexity 1 42 0 1607 207 30 3 chrY 12762761 12763133 -38750451 + MLT1B LTR MaLR 5 386 -4 249 218 0 18 chrY 12763956 12764011 -38749573 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 405 0 0 0 chrY 12764072 12764117 -38749467 + (CA)n Simple_repeat Simple_repeat 2 46 0 3182 221 87 25 chrY 12764117 12764862 -38748722 + MER21A LTR ERV1 24 828 -103 2256 140 26 0 chrY 12764862 12765213 -38748371 + THE1B LTR MaLR 1 360 -4 3182 221 87 25 chrY 12765213 12765308 -38748276 + MER21A LTR ERV1 828 916 -15 2427 134 11 8 chrY 12767058 12767432 -38746152 - THE1C LTR MaLR 0 375 1 263 242 36 38 chrY 12767822 12767944 -38745640 + AluS SINE Alu 1 99 -204 284 298 127 48 chrY 12768710 12768938 -38744646 + MLT1H LTR MaLR 58 303 -246 278 298 12 12 chrY 12769158 12769242 -38744342 + MER2 DNA MER2_type 2 85 -260 553 200 18 120 chrY 12769299 12769524 -38744060 - LTR12 LTR ERV1 -262 452 251 4102 280 14 7 chrY 12769835 12771027 -38742557 - HERV17 LTR ERV1 0 8626 7426 7792 204 27 20 chrY 12771037 12772719 -38740865 - HERV17 LTR ERV1 -4661 3965 2273 1760 212 17 53 chrY 12772941 12773491 -38740093 - HERV17 LTR ERV1 -7697 560 1 619 220 46 50 chrY 12773538 12773756 -38739828 - LTR12 LTR ERV1 -262 452 236 240 150 0 0 chrY 12774054 12774094 -38739490 + MER2 DNA MER2_type 93 132 -213 376 239 110 0 chrY 12774106 12774261 -38739323 - MER2 DNA MER2_type -23 322 151 1691 212 3 20 chrY 12774261 12774576 -38739008 + MER7A DNA MER2_type 1 309 -2729 3799 170 41 36 chrY 12774576 12775351 -38738233 + MER4E LTR ERV1 1 779 0 1691 212 3 20 chrY 12775351 12775389 -38738195 + MER7A DNA MER2_type 309 346 0 746 222 0 0 chrY 12775389 12775541 -38738043 - MER2 DNA MER2_type -193 152 1 207 100 0 0 chrY 12775561 12775591 -38737993 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 282 100 40 0 chrY 12775591 12775641 -38737943 + MER2 DNA MER2_type 156 207 -138 25 0 0 0 chrY 12775666 12775691 -38737893 + AT_rich Low_complexity Low_complexity 1 25 0 391 356 4 29 chrY 12776200 12776439 -38737145 + MIR SINE MIR 30 262 0 362 127 0 0 chrY 12776845 12776908 -38736676 + MER4E LTR ERV1 702 764 -2 405 167 0 0 chrY 12779298 12779370 -38734214 - LTR12 LTR ERV1 -642 72 1 7172 150 3 2 chrY 12779375 12780574 -38733010 - HERV9 LTR ERV1 -5 8394 7194 * 20818 138 6 11 chrY 12780571 12784051 -38729533 - HERV9 LTR ERV1 -2689 5710 2250 721 148 0 7 chrY 12784054 12784189 -38729395 - HERVH LTR ERV1 -1967 5746 5613 5363 138 14 10 chrY 12784202 12785127 -38728457 - HERVH LTR ERV1 -2564 5149 4221 1751 152 8 5 chrY 12785127 12785432 -38728152 - HERVH LTR ERV1 -3425 4288 3993 1057 172 30 30 chrY 12785446 12785678 -38727906 - HERVH LTR ERV1 -3978 3735 3504 * 5166 143 1 9 chrY 12785675 12786567 -38727017 - HERVH LTR ERV1 -4728 2985 2101 6799 148 14 47 chrY 12786567 12788426 -38725158 - HERVH LTR ERV1 -5765 1948 3 1840 120 49 8 chrY 12788428 12788809 -38724775 - LTR7 LTR ERV1 0 450 1 1842 154 7 3 chrY 12791510 12791830 -38721754 + AluSq SINE Alu 1 321 0 1368 170 142 27 chrY 12791900 12792230 -38721354 - LTR10A LTR ERV1 -61 548 181 244 264 126 0 chrY 12792278 12792365 -38721219 - LTR10A LTR ERV1 -511 98 1 436 138 27 69 chrY 12792851 12793039 -38720545 + GA-rich Low_complexity Low_complexity 1 180 0 1568 188 14 4 chrY 12793125 12793402 -38720182 + AluSx SINE Alu 16 295 -17 227 275 9 0 chrY 12793420 12793529 -38720055 + GA-rich Low_complexity Low_complexity 3 112 0 1675 179 4 0 chrY 12793580 12793848 -38719736 + AluSx SINE Alu 5 273 -39 1681 191 9 19 chrY 12794988 12795303 -38718281 + AluJo SINE Alu 1 312 0 349 238 122 12 chrY 12795557 12795721 -38717863 + MLT1C LTR MaLR 164 345 -122 873 269 76 31 chrY 12795759 12796179 -38717405 + MLT1C LTR MaLR 24 466 -1 722 143 41 51 chrY 12796798 12796994 -38716590 + L1PA3 LINE L1 5277 5470 -684 1199 28 0 0 chrY 12796996 12797138 -38716446 + L1PA4 LINE L1 6006 6147 -8 66 35 0 0 chrY 12797138 12797225 -38716359 + AT_rich Low_complexity Low_complexity 1 87 0 950 35 0 0 chrY 12797225 12797340 -38716244 - L1PA4 LINE L1 -8 6147 6033 1360 59 0 2 chrY 12797340 12797526 -38716058 + L1PA3 LINE L1 5655 5836 -285 4093 124 32 1 chrY 12797538 12798198 -38715386 + L1PB3 LINE L1 5475 6154 0 1091 208 104 74 chrY 12798234 12798327 -38715257 + MLT2C2 LTR ERVL 1 90 -374 1354 212 13 33 chrY 12798327 12798633 -38714951 - AluJo SINE Alu -12 300 1 1091 208 104 74 chrY 12798633 12798942 -38714642 + MLT2C2 LTR ERVL 90 415 -49 489 232 6 17 chrY 12799073 12799254 -38714330 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 201 171 0 0 chrY 12799257 12799292 -38714292 + (TA)n Simple_repeat Simple_repeat 2 36 0 1180 128 45 16 chrY 12799293 12799535 -38714049 - L1MA2 LINE L1 -126 6178 5930 193 164 0 33 chrY 12799585 12799646 -38713938 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 2951 110 38 0 chrY 12801012 12801465 -38712119 - L1PA13 LINE L1 0 6163 5694 1416 216 7 14 chrY 12802599 12802890 -38710694 + AluJb SINE Alu 5 293 -19 439 221 8 16 chrY 12803140 12803267 -38710317 - L1MB2 LINE L1 -2 6169 6044 263 157 0 0 chrY 12803267 12803318 -38710266 - L1PA15 LINE L1 -9 6156 6106 1517 171 72 41 chrY 12803319 12803681 -38709903 + THE1C LTR MaLR 1 373 -2 19494 92 5 2 chrY 12803681 12806416 -38707168 - HERVK11 LTR ERVK -111 7842 5100 * 19706 106 1 12 chrY 12806406 12809302 -38704282 - HERVK11 LTR ERVK -5082 2871 6 3176 103 27 12 chrY 12809309 12810239 -38703345 - MER11A LTR ERVK 0 1266 1 498 332 25 68 chrY 12810239 12810519 -38703065 + L1MEd LINE L1 493 760 -5359 251 299 44 38 chrY 12810745 12811089 -38702495 + L1MEd LINE L1 908 1253 -4866 410 114 13 0 chrY 12811231 12811310 -38702274 + (TA)n Simple_repeat Simple_repeat 2 81 0 189 0 0 0 chrY 12811310 12811331 -38702253 + (GA)n Simple_repeat Simple_repeat 2 22 0 279 249 120 40 chrY 12811429 12811654 -38701930 + L1ME LINE L1 5337 5579 -591 385 150 39 39 chrY 12811924 12812104 -38701480 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 460 138 46 26 chrY 12812157 12812425 -38701159 + (TCTA)n Simple_repeat Simple_repeat 1 273 0 224 119 0 24 chrY 12813451 12813493 -38700091 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 257 0 0 chrY 12813523 12813593 -38699991 + (TA)n Simple_repeat Simple_repeat 1 70 0 476 108 22 65 chrY 12813609 12813794 -38699790 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 450 290 63 36 chrY 12813855 12814076 -38699508 - MIR SINE MIR -34 228 2 40068 58 2 2 chrY 12814850 12820840 -38692744 - L1PA3 LINE L1 -3 6152 9 246 271 0 0 chrY 12821074 12821133 -38692451 - LTR16A1 LTR ERVL -7 450 392 21 0 0 0 chrY 12822188 12822209 -38691375 + AT_rich Low_complexity Low_complexity 1 21 0 2044 156 0 0 chrY 12822869 12823211 -38690373 - AluSx SINE Alu 0 346 5 2105 143 0 0 chrY 12823399 12823699 -38689885 + AluY SINE Alu 1 300 -11 2043 195 3 3 chrY 12823761 12824150 -38689434 - MLT1B LTR MaLR 0 390 2 3475 191 47 26 chrY 12824237 12825112 -38688472 + L1MC1 LINE L1 5433 6325 -8 1361 175 9 0 chrY 12825112 12825421 -38688163 + AluSc SINE Alu 1 311 0 1714 194 3 0 chrY 12825429 12825717 -38687867 + AluSx SINE Alu 2 290 -22 2040 193 39 7 chrY 12825961 12826376 -38687208 + MSTA LTR MaLR 1 428 0 1199 273 93 16 chrY 12826696 12827552 -38686032 - Charlie1a DNA MER1_type -480 975 2 1806 185 7 0 chrY 12828057 12828349 -38685235 + AluSx SINE Alu 1 294 -18 1825 172 0 10 chrY 12829153 12829449 -38684135 - AluSx SINE Alu -5 307 15 783 259 112 82 chrY 12829727 12830263 -38683321 + MER20B DNA MER1_type 92 643 -140 198 224 112 71 chrY 12830265 12830363 -38683221 + MIR SINE MIR 161 262 0 333 0 0 0 chrY 12831218 12831255 -38682329 + (TG)n Simple_repeat Simple_repeat 2 38 0 315 65 0 0 chrY 12831761 12831807 -38681777 - MADE1 DNA Mariner -34 46 1 22 0 0 0 chrY 12832476 12832498 -38681086 + AT_rich Low_complexity Low_complexity 1 22 0 1081 206 46 21 chrY 12832665 12832821 -38680763 - AluJo SINE Alu -28 284 118 465 19 0 0 chrY 12832821 12832875 -38680709 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 1081 206 46 21 chrY 12832875 12832956 -38680628 - AluJo SINE Alu -194 118 41 1335 188 61 11 chrY 12832998 12833275 -38680309 + AluJo SINE Alu 1 291 -21 846 187 8 0 chrY 12833297 12833431 -38680153 + FRAM SINE Alu 18 152 -24 366 342 82 31 chrY 12834986 12835410 -38678174 + L1MEd LINE L1 374 819 -5300 412 184 11 11 chrY 12835642 12835729 -38677855 + FLAM SINE Alu 47 133 -10 214 191 16 16 chrY 12835735 12835798 -38677786 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 377 236 54 34 chrY 12835831 12835979 -38677605 + L1MEd LINE L1 938 1088 -5031 1112 224 192 0 chrY 12835997 12836252 -38677332 + AluSx SINE Alu 1 304 -8 244 280 9 37 chrY 12836523 12836630 -38676954 + HAL1 LINE L1 1500 1603 -904 2271 118 0 0 chrY 12837625 12837922 -38675662 + AluY SINE Alu 1 297 -14 8419 55 7 14 chrY 12839095 12840172 -38673412 - MER11C LTR ERVK -2 1069 1 426 280 140 6 chrY 12840172 12840329 -38673255 - MIR SINE MIR -83 179 2 471 282 94 11 chrY 12841061 12841242 -38672342 + MER58A DNA MER1_type 29 224 0 432 116 0 0 chrY 12841618 12841687 -38671897 - L1MA8 LINE L1 -336 5976 5908 660 185 139 62 chrY 12841688 12841808 -38671776 + L1MA8 LINE L1 6003 6112 -179 2610 148 12 2 chrY 12841808 12842234 -38671350 + MER57B LTR ERV1 1 430 -4 660 185 139 62 chrY 12842234 12842372 -38671212 + L1MA8 LINE L1 6112 6281 -10 1364 201 8 4 chrY 12843368 12843622 -38669962 + AluSx SINE Alu 1 255 -57 432 0 0 0 chrY 12843642 12843690 -38669894 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 34 24 0 0 chrY 12844500 12844541 -38669043 + AT_rich Low_complexity Low_complexity 1 41 0 405 198 0 0 chrY 12844597 12844688 -38668896 + CT-rich Low_complexity Low_complexity 2 92 0 569 302 91 75 chrY 12844861 12844915 -38668669 + L1M4 LINE L1 4711 4763 -1383 1950 157 3 0 chrY 12844915 12845215 -38668369 + AluSx SINE Alu 6 306 -6 569 302 91 75 chrY 12845215 12845785 -38667799 + L1M4 LINE L1 4763 5349 -797 1691 116 14 0 chrY 12845785 12846060 -38667524 + L1PA13 LINE L1 5878 6156 -7 569 302 91 75 chrY 12846060 12846112 -38667472 + L1M4 LINE L1 5349 5399 -747 3202 120 4 4 chrY 12846785 12847270 -38666314 - LTR19A LTR ERV1 -1 485 1 30 59 0 0 chrY 12847590 12847641 -38665943 + AT_rich Low_complexity Low_complexity 1 51 0 2149 157 0 0 chrY 12847715 12848021 -38665563 + AluSx SINE Alu 1 306 -6 2336 264 70 23 chrY 12848651 12849769 -38663815 - L1M4 LINE L1 -1304 4842 3673 623 275 59 19 chrY 12849815 12850135 -38663449 - L1MCa LINE L1 -4455 1941 1609 724 139 47 0 chrY 12850144 12850316 -38663268 + (TA)n Simple_repeat Simple_repeat 1 180 0 821 130 22 15 chrY 12850355 12850762 -38662822 + (TA)n Simple_repeat Simple_repeat 1 410 0 564 297 56 26 chrY 12850800 12851242 -38662342 - L1MCa LINE L1 -4822 1574 979 1659 154 27 0 chrY 12851270 12851530 -38662054 - AluSx SINE Alu -25 287 21 754 292 70 86 chrY 12851571 12852359 -38661225 - L1MCa LINE L1 -5594 802 28 532 340 20 0 chrY 12852583 12852780 -38660804 + MIR SINE MIR 37 237 -25 849 232 11 5 chrY 12853684 12853874 -38659710 - AluJo SINE Alu -76 236 46 743 267 34 27 chrY 12854595 12854891 -38658693 - MLT1D LTR MaLR -2 503 206 181 269 58 0 chrY 12855187 12855239 -38658345 - MIR3 SINE MIR 0 208 154 1972 142 42 28 chrY 12855597 12855956 -38657628 + THE1B LTR MaLR 1 364 0 600 225 19 32 chrY 12856505 12856702 -38656882 - L1MC2 LINE L1 -127 7657 6105 3989 132 15 130 chrY 12856702 12858255 -38655329 + pTR5 LTR ERV1 744 2606 0 1066 209 18 32 chrY 12858256 12858539 -38655045 - L1MC3 LINE L1 -301 7484 7206 3301 169 13 32 chrY 12858985 12859678 -38653906 + L1PA16 LINE L1 5465 6144 -22 22 35 0 0 chrY 12859678 12859707 -38653877 + AT_rich Low_complexity Low_complexity 1 29 0 495 253 6 24 chrY 12860168 12860326 -38653258 + MLT2C2 LTR ERVL 6 160 -304 1480 204 26 26 chrY 12860326 12860669 -38652915 - MLT1A1 LTR MaLR 0 365 23 704 223 143 5 chrY 12860694 12860918 -38652666 + MLT2C2 LTR ERVL 161 415 -49 1527 216 0 4 chrY 12861204 12861477 -38652107 + AluJb SINE Alu 12 283 -29 822 115 14 14 chrY 12861477 12861625 -38651959 + (GGAA)n Simple_repeat Simple_repeat 1 148 0 1273 207 50 23 chrY 12862053 12862414 -38651170 + AluJb SINE Alu 1 369 0 23 78 0 0 chrY 12863325 12863376 -38650208 + AT_rich Low_complexity Low_complexity 1 51 0 1757 230 92 30 chrY 12863715 12864375 -38649209 + L1MB8 LINE L1 4023 4723 -1423 1443 216 31 34 chrY 12864356 12864772 -38648812 + L1MB8 LINE L1 5727 6141 -37 * 2299 213 50 9 chrY 12865081 12865606 -38647978 - MER41C LTR ERV1 -8 546 1 2296 152 0 81 chrY 12866047 12866541 -38647043 + LTR8 LTR ERV1 1 454 -237 1636 122 61 24 chrY 12866541 12866836 -38646748 + MER61E LTR ERV1 1 306 -263 799 146 20 46 chrY 12866858 12867009 -38646575 + LTR8 LTR ERV1 545 691 0 267 254 0 0 chrY 12867294 12867357 -38646227 - L1MD3 LINE L1 -516 7479 7417 1229 103 3 201 chrY 12867367 12867679 -38645905 - MLT2A2 LTR ERVL -4 449 201 447 105 0 0 chrY 12867679 12867755 -38645829 - MLT2A1 LTR ERVL 0 444 369 33 56 0 0 chrY 12867755 12867809 -38645775 + AT_rich Low_complexity Low_complexity 1 54 0 2450 112 5 23 chrY 12867809 12868203 -38645381 - MLT2A1 LTR ERVL -46 398 12 1057 288 113 21 chrY 12868214 12868559 -38645025 - L1MC4 LINE L1 -994 7048 6635 2610 180 52 38 chrY 12868559 12869171 -38644413 - LTR29 LTR ERV1 -1 621 1 1057 288 113 21 chrY 12869171 12869357 -38644227 - L1MC4 LINE L1 -1407 6635 6468 1719 197 0 7 chrY 12869449 12869748 -38643836 - AluSx SINE Alu -15 297 1 675 233 38 13 chrY 12869951 12870110 -38643474 - AluJb SINE Alu -147 165 3 686 283 43 12 chrY 12870128 12870476 -38643108 + MSTD LTR MaLR 2 396 0 2256 134 13 15 chrY 12870619 12871014 -38642570 + L1PA10 LINE L1 5764 6157 -11 24 53 0 0 chrY 12871015 12871053 -38642531 + AT_rich Low_complexity Low_complexity 1 38 0 4644 117 9 1 chrY 12871615 12872300 -38641284 + LTR8 LTR ERV1 2 691 0 1056 228 67 46 chrY 12872348 12872694 -38640890 + MLT1A2 LTR MaLR 9 361 -13 189 281 104 21 chrY 12873393 12873489 -38640095 + MIR SINE MIR 105 208 -54 198 0 0 0 chrY 12875091 12875113 -38638471 + (TA)n Simple_repeat Simple_repeat 1 22 0 1326 219 14 3 chrY 12875330 12875618 -38637966 + AluJo SINE Alu 1 291 -21 454 317 28 7 chrY 12876525 12876670 -38636914 - MIR SINE MIR -69 193 46 1373 206 7 36 chrY 12876725 12877026 -38636558 + AluJo SINE Alu 1 292 -10 36 0 0 0 chrY 12878287 12878323 -38635261 + AT_rich Low_complexity Low_complexity 1 36 0 258 214 80 36 chrY 12878921 12879033 -38634551 + LTR37A LTR ERV1 50 166 -260 298 287 10 0 chrY 12879219 12879320 -38634264 + LTR37A LTR ERV1 314 415 -11 339 318 39 0 chrY 12879329 12879458 -38634126 + L1MCc LINE L1 337 470 -5953 367 220 42 4 chrY 12879458 12879562 -38634022 + AluJ/FLAM SINE Alu 2 98 -204 894 132 7 59 chrY 12879562 12879714 -38633870 + AluJo/FRAM SINE Alu 157 300 -12 1568 174 8 4 chrY 12879742 12880007 -38633577 + AluSc SINE Alu 34 299 -10 1836 193 41 32 chrY 12880095 12880629 -38632955 + MLT2A2 LTR ERVL 4 554 0 379 337 61 61 chrY 12880744 12881154 -38632430 + L1MCc LINE L1 658 1067 -5356 37 39 0 0 chrY 12881191 12881242 -38632342 + AT_rich Low_complexity Low_complexity 1 51 0 541 60 12 12 chrY 12881243 12881326 -38632258 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 918 177 10 61 chrY 12881326 12881524 -38632060 - AluJo SINE Alu -38 274 87 225 209 0 0 chrY 12881530 12881573 -38632011 + MER45 DNA AcHobo 1515 1557 -24 816 262 86 25 chrY 12881644 12882003 -38631581 + Charlie1b DNA MER1_type 1 381 -142 221 250 58 0 chrY 12882745 12882797 -38630787 - MER5A DNA MER1_type -72 117 63 348 236 11 0 chrY 12882813 12882902 -38630682 - L1MA4A LINE L1 -23 6280 6191 1535 205 36 3 chrY 12882910 12883295 -38630289 - L1MA4A LINE L1 -183 6120 5723 1133 211 9 5 chrY 12883297 12883515 -38630069 - AluSx SINE Alu -93 219 1 219 277 15 15 chrY 12883598 12883663 -38629921 - MER5A DNA MER1_type -114 75 11 232 211 70 0 chrY 12883715 12883772 -38629812 - MLT1J2 LTR MaLR -389 61 1 24 0 0 0 chrY 12884802 12884826 -38628758 + AT_rich Low_complexity Low_complexity 1 24 0 1865 173 0 3 chrY 12885516 12885811 -38627773 + AluSg SINE Alu 3 296 -14 1299 225 17 33 chrY 12885963 12886265 -38627319 + AluJo SINE Alu 3 299 -13 2288 149 6 3 chrY 12886601 12886964 -38626620 + THE1B LTR MaLR 1 364 0 254 320 98 13 chrY 12887145 12887370 -38626214 - Tigger8 DNA MER2_type -18 648 405 28 48 0 0 chrY 12887384 12887426 -38626158 + AT_rich Low_complexity Low_complexity 1 42 0 215 324 9 0 chrY 12887733 12887841 -38625743 + (TA)n Simple_repeat Simple_repeat 1 109 0 261 278 174 26 chrY 12888003 12888118 -38625466 + MIR SINE MIR 63 194 -68 21 57 0 0 chrY 12888397 12888432 -38625152 + AT_rich Low_complexity Low_complexity 1 35 0 1703 165 48 31 chrY 12888644 12889002 -38624582 + THE1B LTR MaLR 1 364 0 941 274 69 34 chrY 12889454 12889563 -38624021 + MLT1E LTR MaLR 171 275 -318 11861 124 17 3 chrY 12889563 12889846 -38623738 + L1PA7 LINE L1 3419 3697 -2457 243 0 0 0 chrY 12889846 12889873 -38623711 + (CA)n Simple_repeat Simple_repeat 2 28 0 11861 124 17 3 chrY 12889873 12892314 -38621270 + L1PA7 LINE L1 3697 6154 0 941 274 69 34 chrY 12892314 12892583 -38621001 + MLT1E LTR MaLR 275 562 -31 199 176 39 20 chrY 12893409 12893460 -38620124 - L2 LINE L2 -2 3270 3219 1829 135 4 9 chrY 12894334 12894733 -38618851 + LTR7 LTR ERV1 1 448 -2 1352 214 91 22 chrY 12897445 12897809 -38615775 + MLT1B LTR MaLR 1 389 -1 231 150 0 0 chrY 12898130 12898170 -38615414 - MLT2C1 LTR ERVL 0 397 358 1056 171 0 0 chrY 12898201 12898365 -38615219 + AluJb SINE Alu 134 297 -15 200 145 40 13 chrY 12898398 12898474 -38615110 + (TA)n Simple_repeat Simple_repeat 1 78 0 278 177 63 40 chrY 12898643 12898818 -38614766 + (TA)n Simple_repeat Simple_repeat 1 179 0 1210 232 30 16 chrY 12898855 12899193 -38614391 - MLT2C1 LTR ERVL -35 429 18 420 202 12 0 chrY 12899193 12899277 -38614307 + MLT1B LTR MaLR 3 87 -303 1088 203 105 35 chrY 12899284 12899427 -38614157 + MER2 DNA MER2_type 8 140 -205 1518 221 18 32 chrY 12899427 12899767 -38613817 + MER1B DNA MER1_type 3 337 0 1088 203 105 35 chrY 12899767 12899938 -38613646 + MER2 DNA MER2_type 140 344 -1 * 1439 195 10 10 chrY 12899938 12900029 -38613555 + MLT1B LTR MaLR 87 177 -213 2343 50 40 0 chrY 12900029 12900326 -38613258 + AluY SINE Alu 1 309 -2 1439 195 10 10 chrY 12900326 12900535 -38613049 + MLT1B LTR MaLR 176 387 -3 23 33 0 0 chrY 12900678 12900708 -38612876 + AT_rich Low_complexity Low_complexity 1 30 0 369 0 0 0 chrY 12900824 12900865 -38612719 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1426 112 0 0 chrY 12900865 12901070 -38612514 - L1PA7 LINE L1 -13 6141 5937 299 276 37 70 chrY 12901093 12901365 -38612219 + L1MC/D LINE L1 5557 5819 -1989 1280 248 34 39 chrY 12902438 12902845 -38610739 + MLT1C LTR MaLR 3 407 -60 24 77 0 0 chrY 12903203 12903255 -38610329 + AT_rich Low_complexity Low_complexity 1 52 0 1233 152 31 5 chrY 12903255 12903479 -38610105 - L1PA16 LINE L1 -9 6157 5928 1303 165 4 4 chrY 12903479 12903722 -38609862 + L1PA16 LINE L1 5677 5919 -247 2081 144 55 27 chrY 12904057 12904495 -38609089 - LTR7 LTR ERV1 0 450 1 418 285 33 23 chrY 12904597 12904811 -38608773 + LTR16B LTR ERVL 5 220 -244 646 154 0 0 chrY 12904935 12905045 -38608539 - L1PA16 LINE L1 -330 5836 5727 * 3011 111 6 0 chrY 12905031 12905499 -38608085 - L1P LINE L1 -1835 4311 3841 22 35 0 0 chrY 12905744 12905773 -38607811 + AT_rich Low_complexity Low_complexity 1 29 0 1629 149 0 71 chrY 12905927 12906222 -38607362 + AluSg SINE Alu 1 274 -36 312 158 0 0 chrY 12906223 12906280 -38607304 + (CACAA)n Simple_repeat Simple_repeat 4 60 0 336 340 51 6 chrY 12906298 12906454 -38607130 - MIR3 SINE MIR -2 206 44 192 40 0 0 chrY 12906474 12906499 -38607085 + (TG)n Simple_repeat Simple_repeat 2 26 0 946 204 98 129 chrY 12906679 12907212 -38606372 + MLT1E1 LTR MaLR 139 654 0 2719 20 0 0 chrY 12907499 12907804 -38605780 + AluYb8 SINE Alu 1 305 -13 1173 281 109 29 chrY 12908630 12909179 -38604405 - MLT1E LTR MaLR 0 593 1 381 280 102 27 chrY 12909250 12909475 -38604109 - MLT1E1 LTR MaLR -412 242 1 1880 158 7 0 chrY 12910407 12910699 -38602885 - AluSg SINE Alu -2 308 15 386 84 72 0 chrY 12910765 12910848 -38602736 + (TATAG)n Simple_repeat Simple_repeat 2 90 0 249 108 0 0 chrY 12910844 12910881 -38602703 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 481 196 8 7 chrY 12911229 12911347 -38602237 + L1PA16 LINE L1 6051 6165 0 1877 172 0 3 chrY 12912833 12913130 -38600454 - AluSc SINE Alu -13 296 1 627 311 73 16 chrY 12913631 12913946 -38599638 - MER58B DNA MER1_type 0 341 9 1357 207 33 33 chrY 12914103 12914403 -38599181 + AluJo SINE Alu 5 304 -8 492 111 0 0 chrY 12914419 12914500 -38599084 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 215 196 39 0 chrY 12914508 12914559 -38599025 + GA-rich Low_complexity Low_complexity 2 54 0 1538 212 3 16 chrY 12915294 12915610 -38597974 + AluJb SINE Alu 1 312 0 2029 126 0 20 chrY 12915621 12915923 -38597661 + AluSg1 SINE Alu 12 307 -2 24 67 0 0 chrY 12915961 12916006 -38597578 + AT_rich Low_complexity Low_complexity 1 45 0 438 70 0 0 chrY 12916458 12916515 -38597069 - Alu SINE Alu -253 57 1 1538 211 0 17 chrY 12917598 12917896 -38595688 - AluJo SINE Alu -19 293 1 2906 0 0 0 chrY 12918233 12918544 -38595040 + AluYa5 SINE Alu 1 311 0 315 0 0 0 chrY 12918544 12918579 -38595005 + (TA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chrY 12919401 12919424 -38594160 + AT_rich Low_complexity Low_complexity 1 23 0 1920 159 23 3 chrY 12919541 12919843 -38593741 - AluSx SINE Alu -4 308 1 1159 170 41 32 chrY 12920008 12920373 -38593211 - L1P4 LINE L1 -686 5480 5096 714 279 37 0 chrY 12920915 12921247 -38592337 - MER63 DNA MER1_type -75 986 9 1529 216 0 3 chrY 12921316 12921621 -38591963 - AluJo SINE Alu -8 304 1 2143 128 0 3 chrY 12922149 12922445 -38591139 + AluSx SINE Alu 1 295 -17 3149 119 221 14 chrY 12922470 12923040 -38590544 - LTR12 LTR ERV1 0 688 1 189 121 0 0 chrY 12923355 12923388 -38590196 + (TG)n Simple_repeat Simple_repeat 1 33 0 213 268 0 28 chrY 12923392 12923463 -38590121 + CT-rich Low_complexity Low_complexity 2 70 0 1207 200 28 28 chrY 12923508 12923798 -38589786 + AluSx SINE Alu 1 290 -22 183 42 0 0 chrY 12924393 12924417 -38589167 + (TG)n Simple_repeat Simple_repeat 2 25 0 1511 167 70 0 chrY 12924451 12924708 -38588876 + AluSx SINE Alu 2 276 -36 228 67 0 0 chrY 12924717 12924747 -38588837 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1700 147 7 32 chrY 12924788 12925097 -38588487 - AluSq SINE Alu 0 306 5 297 0 0 0 chrY 12925587 12925620 -38587964 + (TG)n Simple_repeat Simple_repeat 1 33 0 215 150 25 0 chrY 12925622 12925662 -38587922 + GA-rich Low_complexity Low_complexity 2 42 0 22 70 0 0 chrY 12925700 12925743 -38587841 + AT_rich Low_complexity Low_complexity 1 43 0 302 206 76 0 chrY 12926240 12926332 -38587252 + L1MB3 LINE L1 6085 6183 0 1774 188 0 10 chrY 12926338 12926642 -38586942 + AluSx SINE Alu 1 301 -11 227 342 50 0 chrY 12927040 12927160 -38586424 + MER20B DNA MER1_type 25 150 -633 194 81 27 0 chrY 12927259 12927296 -38586288 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 1024 233 5 22 chrY 12927327 12927550 -38586034 + MER20 DNA MER1_type 1 219 0 664 321 27 57 chrY 12928033 12928332 -38585252 - MLT1E LTR MaLR -24 569 280 321 262 90 55 chrY 12928525 12928670 -38584914 - MLT1E LTR MaLR -347 246 97 1685 203 0 7 chrY 12928721 12929017 -38584567 + AluSx SINE Alu 1 294 -18 237 139 0 0 chrY 12929039 12929082 -38584502 + (TC)n Simple_repeat Simple_repeat 2 44 0 1247 214 11 22 chrY 12929128 12929403 -38584181 - AluJo SINE Alu -38 274 3 189 0 0 0 chrY 12929496 12929517 -38584067 + (CA)n Simple_repeat Simple_repeat 2 22 0 1044 178 5 25 chrY 12929535 12929732 -38583852 - AluSq SINE Alu 0 313 121 32 0 0 0 chrY 12930032 12930064 -38583520 + AT_rich Low_complexity Low_complexity 1 32 0 2493 183 41 71 chrY 12930114 12930326 -38583258 - L1MC3 LINE L1 -471 7314 7097 2446 169 36 7 chrY 12930326 12930740 -38582844 - MSTA LTR MaLR -2 426 1 2493 183 41 71 chrY 12930740 12931189 -38582395 - L1MC3 LINE L1 -688 7097 6673 2530 112 46 3 chrY 12931402 12931749 -38581835 + THE1B LTR MaLR 1 362 -2 937 269 123 6 chrY 12932217 12932541 -38581043 + MLT1A1 LTR MaLR 2 363 -2 286 159 200 106 chrY 12932851 12932887 -38580697 - MER53 DNA DNA 0 189 158 1619 207 3 10 chrY 12932887 12933187 -38580397 - AluSx SINE Alu -14 298 1 286 159 200 106 chrY 12933187 12933320 -38580264 - MER53 DNA DNA -31 158 4 258 180 36 36 chrY 12933530 12933669 -38579915 + (TTA)n Simple_repeat Simple_repeat 1 139 0 1123 256 114 29 chrY 12933802 12934223 -38579361 + MLT1C LTR MaLR 11 467 0 3943 143 88 71 chrY 12934309 12935267 -38578317 + pTR5 LTR ERV1 745 2025 -413 265 265 31 20 chrY 12935267 12935365 -38578219 + LTR30 LTR ERV1 544 642 -80 36275 101 8 7 chrY 12935368 12940547 -38573037 + Harlequin LTR ERV1 1 4979 -1975 679 139 224 0 chrY 12940515 12940760 -38572824 + Harlequin LTR ERV1 840 1139 -5757 * 6138 124 39 49 chrY 12940816 12942431 -38571153 + pTR5 LTR ERV1 494 8399 0 334 224 31 20 chrY 12942431 12942529 -38571055 + LTR30 LTR ERV1 544 642 -80 1185 119 97 0 chrY 12942530 12942715 -38570869 + LTR12 LTR ERV1 377 579 -135 297 161 0 36 chrY 12942715 12942771 -38570813 + AluJo SINE Alu 66 115 -187 402 154 0 0 chrY 12942789 12942854 -38570730 - MADE1 DNA Mariner -14 66 2 777 177 16 8 chrY 12942854 12942978 -38570606 + AluJo SINE Alu 118 242 -70 234 125 0 0 chrY 12942999 12943047 -38570537 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 263 291 38 0 chrY 12943285 12943364 -38570220 - MLT1K LTR MaLR -348 240 159 277 305 0 93 chrY 12943478 12943596 -38569988 - MER5A DNA MER1_type -72 117 11 293 230 0 17 chrY 12944299 12944473 -38569111 + (TA)n Simple_repeat Simple_repeat 1 171 0 495 87 0 0 chrY 12944608 12944677 -38568907 + (TA)n Simple_repeat Simple_repeat 1 69 0 240 211 44 0 chrY 12945548 12945638 -38567946 + (TA)n Simple_repeat Simple_repeat 2 95 0 1587 140 34 0 chrY 12946033 12946268 -38567316 + AluSc SINE Alu 56 298 -11 181 309 31 41 chrY 12947326 12947423 -38566161 + MER5B DNA MER1_type 54 149 -29 1426 212 28 0 chrY 12948376 12948664 -38564920 - AluJb SINE Alu -16 296 1 34 24 0 0 chrY 12948664 12948705 -38564879 + AT_rich Low_complexity Low_complexity 1 41 0 284 115 49 0 chrY 12948902 12948963 -38564621 + C-rich Low_complexity Low_complexity 3 66 0 183 184 0 0 chrY 12948980 12949018 -38564566 + CT-rich Low_complexity Low_complexity 1 38 0 253 333 25 58 chrY 12949043 12949286 -38564298 + L2 LINE L2 2611 2845 -469 225 220 0 17 chrY 12949760 12949819 -38563765 + (TA)n Simple_repeat Simple_repeat 2 59 0 210 250 127 98 chrY 12950002 12950238 -38563346 - MIR SINE MIR -19 243 1 287 287 190 29 chrY 12950453 12950627 -38562957 - MIR SINE MIR -60 202 1 180 194 28 0 chrY 12950844 12950880 -38562704 - L3 LINE CR1 -886 691 655 26 50 0 0 chrY 12951871 12951911 -38561673 + AT_rich Low_complexity Low_complexity 1 40 0 209 238 0 0 chrY 12952194 12952236 -38561348 + (TA)n Simple_repeat Simple_repeat 2 43 0 216 200 0 0 chrY 12952250 12952295 -38561289 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 0 74 0 chrY 12954430 12954457 -38559127 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 294 73 0 0 chrY 12955218 12955259 -38558325 + (TG)n Simple_repeat Simple_repeat 2 42 0 29 28 0 0 chrY 12957119 12957155 -38556429 + AT_rich Low_complexity Low_complexity 1 36 0 1931 134 31 22 chrY 12957162 12957483 -38556101 - THE1C LTR MaLR -51 324 1 390 173 0 0 chrY 12958735 12958810 -38554774 + (TA)n Simple_repeat Simple_repeat 1 75 0 901 184 66 79 chrY 12958905 12959133 -38554451 + AluJo SINE Alu 88 312 0 29 104 0 0 chrY 12960342 12960448 -38553136 + AT_rich Low_complexity Low_complexity 1 106 0 244 177 99 0 chrY 12960475 12960616 -38552968 + (TA)n Simple_repeat Simple_repeat 2 156 0 181 290 47 75 chrY 12961333 12961440 -38552144 - L2 LINE L2 -1 3271 3168 659 157 13 13 chrY 12961567 12961720 -38551864 + CT-rich Low_complexity Low_complexity 3 155 0 4010 134 14 3 chrY 12962380 12963022 -38550562 - L1PA8 LINE L1 -2 6170 5522 480 18 0 0 chrY 12962996 12963052 -38550532 + L1P LINE L1 5371 5426 -746 * 342 0 0 0 chrY 12963562 12963600 -38549984 + (TG)n Simple_repeat Simple_repeat 2 39 0 2616 51 0 3 chrY 12965029 12965340 -38548244 - AluY SINE Alu -1 310 1 1296 201 36 79 chrY 12965408 12965711 -38547873 + AluJo SINE Alu 1 290 -12 1439 206 70 0 chrY 12966459 12966746 -38546838 + AluSx SINE Alu 1 307 -5 780 200 8 0 chrY 12967565 12967695 -38545889 - FLAM_C SINE Alu -1 132 2 678 218 103 6 chrY 12967909 12968083 -38545501 - L1MD3 LINE L1 -266 7729 7539 318 214 0 0 chrY 12968081 12968151 -38545433 - L1MC3 LINE L1 -756 7029 6960 * 12798 161 18 62 chrY 12968736 12968893 -38544691 + L1PA12 LINE L1 473 635 -6949 225 0 0 0 chrY 12968893 12968918 -38544666 + (TG)n Simple_repeat Simple_repeat 1 25 0 12798 161 18 62 chrY 12968918 12971453 -38542131 + L1PA12 LINE L1 635 4277 -3307 3616 93 18 18 chrY 12971453 12971933 -38541651 + L1PA7 LINE L1 5654 6150 -4 420 244 146 28 chrY 12971934 12972188 -38541396 - L1MC5 LINE L1 -227 7734 7451 651 200 0 9 chrY 12972431 12972546 -38541038 - FRAM SINE Alu -21 155 42 260 156 0 0 chrY 12972630 12972675 -38540909 - LTR29-int LTR ERV1 -5439 1159 1115 211 140 0 100 chrY 12972926 12972976 -38540608 - L2 LINE L2 -8 3305 3261 797 201 180 143 chrY 12973486 12973573 -38540011 - MLT1F1 LTR MaLR 0 567 485 12809 47 5 1 chrY 12973573 12975852 -38537732 - L1PA2 LINE L1 0 6155 3871 797 201 180 143 chrY 12975852 12976191 -38537393 - MLT1F1 LTR MaLR -82 485 125 1314 222 3 0 chrY 12977001 12977300 -38536284 + AluJb SINE Alu 42 300 -12 225 89 0 125 chrY 12979024 12979080 -38534504 + L1PA8A LINE L1 5683 5731 -400 4779 121 11 3 chrY 12979111 12979838 -38533746 - L1P LINE L1 -3935 2211 1479 * 16247 126 12 3 chrY 12979836 12982360 -38531224 + L1P LINE L1 2240 4789 -1357 315 0 0 0 chrY 12982360 12982395 -38531189 + (TG)n Simple_repeat Simple_repeat 2 36 0 274 188 20 0 chrY 12982415 12982516 -38531068 + (TA)n Simple_repeat Simple_repeat 1 103 0 1298 188 56 43 chrY 12982993 12983296 -38530288 - AluJo SINE Alu -5 307 1 2142 178 17 3 chrY 12983994 12984354 -38529230 - MLT1A1 LTR MaLR 0 365 1 1762 172 3 0 chrY 12984675 12984965 -38528619 + AluSx SINE Alu 12 302 -10 315 324 65 32 chrY 12985134 12985230 -38528354 - MIR SINE MIR -11 251 160 1270 223 153 50 chrY 12985230 12985687 -38527897 - MLT1D LTR MaLR -1 504 1 315 324 65 32 chrY 12985687 12985775 -38527809 - MIR SINE MIR -102 160 61 306 214 0 0 chrY 12985810 12985866 -38527718 - LTR29 LTR ERV1 0 622 567 665 203 0 68 chrY 12985867 12986030 -38527554 - LTR29-int LTR ERV1 -6167 164 13 2690 184 137 2 chrY 12986044 12986592 -38526992 - LTR29 LTR ERV1 0 622 1 231 146 0 0 chrY 12987422 12987463 -38526121 + (CA)n Simple_repeat Simple_repeat 2 42 0 359 172 47 0 chrY 12987474 12987538 -38526046 + MER47A DNA MER2_type 15 81 -285 2003 214 47 11 chrY 12987545 12988013 -38525571 - MER4D LTR ERV1 -26 877 393 2086 178 13 5 chrY 12988180 12988557 -38525027 - MER4D LTR ERV1 -523 380 1 1379 200 28 10 chrY 12988559 12988849 -38524735 + MER47A DNA MER2_type 72 366 0 315 85 0 0 chrY 12988860 12988907 -38524677 + (TG)n Simple_repeat Simple_repeat 2 48 0 260 308 55 22 chrY 12988916 12989007 -38524577 + MIR SINE MIR 89 182 -80 16152 128 15 1 chrY 12989884 12993083 -38520501 - L1PA7 LINE L1 -6 6148 2902 12981 141 22 72 chrY 12993184 12995820 -38517764 + L1P LINE L1 387 2890 -3256 2201 105 16 3 chrY 12996013 12996317 -38517267 - AluSp SINE Alu -3 310 3 1715 186 0 29 chrY 12996318 12996630 -38516954 - AluJb SINE Alu -9 303 1 2002 75 4 0 chrY 12996766 12997019 -38516565 - L1PA4 LINE L1 0 6155 5902 26 30 0 0 chrY 12997547 12997580 -38516004 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrY 12997606 12997629 -38515955 + AT_rich Low_complexity Low_complexity 1 23 0 703 199 32 43 chrY 12997748 12997934 -38515650 - MER39B LTR ERV1 0 653 470 4406 165 38 25 chrY 12997934 12998769 -38514815 - L1PA16 LINE L1 -16 6150 5305 2582 156 48 8 chrY 12998770 12999252 -38514332 - MER39B LTR ERV1 -152 501 1 239 0 32 0 chrY 12999368 12999399 -38514185 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 41319 72 5 1 chrY 12999399 13005518 -38508066 - L1PA4 LINE L1 -11 6144 1 2315 100 0 6 chrY 13006351 13006672 -38506912 - L1P3 LINE L1 -431 5723 5405 2793 94 3 3 chrY 13006672 13007024 -38506560 + L1PA7 LINE L1 5787 6146 -8 225 0 0 0 chrY 13007031 13007056 -38506528 + (CAT)n Simple_repeat Simple_repeat 1 25 0 2025 191 75 10 chrY 13007202 13007604 -38505980 - MSTA LTR MaLR 0 428 1 454 311 59 25 chrY 13007662 13007900 -38505684 + HAL1 LINE L1 1548 1793 -714 1524 206 3 17 chrY 13008219 13008511 -38505073 + AluJb SINE Alu 1 288 -24 180 0 0 0 chrY 13008515 13008535 -38505049 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 318 313 23 30 chrY 13008562 13008693 -38504891 + HAL1 LINE L1 2269 2398 -109 1720 94 4 0 chrY 13008782 13009059 -38504525 + AluY SINE Alu 78 355 0 527 106 6 3 chrY 13009119 13009213 -38504371 - L1P4 LINE L1 -476 5678 5587 484 286 23 35 chrY 13009332 13009503 -38504081 - MER5B DNA MER1_type -6 172 4 1236 213 0 94 chrY 13009550 13009878 -38503706 + AluJb SINE Alu 3 299 -13 811 178 0 0 chrY 13011148 13011277 -38502307 + AluJb SINE Alu 167 295 -17 1098 201 22 18 chrY 13011277 13011506 -38502078 + AluJo SINE Alu 1 230 -82 1391 228 21 0 chrY 13012925 13013215 -38500369 - AluJb SINE Alu -16 296 1 240 276 45 22 chrY 13013468 13013602 -38499982 - Charlie4 DNA MER1_type -20 1941 1805 672 221 0 21 chrY 13013616 13013761 -38499823 + FLAM_C SINE Alu 2 143 0 401 246 8 31 chrY 13013891 13014021 -38499563 - Charlie4 DNA MER1_type -1822 139 13 838 86 94 0 chrY 13014023 13014140 -38499444 + L1MA1 LINE L1 6170 6297 -5 1975 159 0 0 chrY 13015341 13015649 -38497935 + AluSc SINE Alu 1 308 -1 217 274 11 32 chrY 13016959 13016982 -38496602 + (TATATG)n Simple_repeat Simple_repeat 2 24 -70 2199 155 5 50 chrY 13016982 13017363 -38496221 - THE1B LTR MaLR 0 364 1 217 274 11 32 chrY 13017363 13017434 -38496150 + (TATATG)n Simple_repeat Simple_repeat 24 94 0 14557 109 57 51 chrY 13017480 13021154 -38492430 - HERV9 LTR ERV1 0 8399 504 10627 94 9 9 chrY 13021127 13022582 -38491002 - HERV9 LTR ERV1 -2067 6332 4878 22058 116 42 41 chrY 13022582 13027559 -38486025 - HERV9 LTR ERV1 0 2438 30 337 26 0 0 chrY 13027634 13027673 -38485911 - MLT2A2 LTR ERVL -2 451 413 267 31 0 0 chrY 13027674 13027706 -38485878 + (TA)n Simple_repeat Simple_repeat 2 33 0 192 40 0 0 chrY 13027732 13027757 -38485827 + (TG)n Simple_repeat Simple_repeat 2 26 0 267 213 16 8 chrY 13027790 13027917 -38485667 + (TA)n Simple_repeat Simple_repeat 2 129 0 244 257 14 0 chrY 13027949 13028019 -38485565 + (TA)n Simple_repeat Simple_repeat 1 71 0 2506 122 46 3 chrY 13028021 13028413 -38485171 - MLT2A2 LTR ERVL -44 409 1 21 0 0 0 chrY 13028965 13028986 -38484598 + AT_rich Low_complexity Low_complexity 1 21 0 22 99 0 0 chrY 13029191 13029262 -38484322 + AT_rich Low_complexity Low_complexity 1 71 0 1793 168 12 3 chrY 13029517 13029862 -38483722 - L1MA3 LINE L1 -2 6303 5956 1870 151 0 25 chrY 13029880 13030198 -38483386 - AluSg SINE Alu 0 310 1 2017 99 34 24 chrY 13030441 13030733 -38482851 + AluSc SINE Alu 1 295 -14 301 277 100 58 chrY 13031330 13031550 -38482034 - L1ME3 LINE L1 -232 5930 5721 1853 138 16 10 chrY 13031550 13031855 -38481729 + L1PA11 LINE L1 5865 6171 -3 301 277 100 58 chrY 13031855 13031928 -38481656 - L1ME3 LINE L1 -441 5721 5652 299 25 25 0 chrY 13031928 13031968 -38481616 + (TG)n Simple_repeat Simple_repeat 2 42 0 301 277 100 58 chrY 13031968 13032206 -38481378 - L1ME3 LINE L1 -510 5652 5360 1022 240 42 13 chrY 13032790 13033102 -38480482 + MLT1A1 LTR MaLR 3 323 -42 481 248 34 0 chrY 13033544 13033661 -38479923 - FLAM_A SINE Alu -12 121 1 3402 170 50 12 chrY 13033801 13034520 -38479064 - L1PA16 LINE L1 -9 6157 5412 303 161 0 0 chrY 13035601 13035657 -38477927 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 24245 146 12 34 chrY 13036000 13040337 -38473247 - L1PA8 LINE L1 -4 6483 2229 396 59 0 0 chrY 13040337 13040388 -38473196 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 24245 146 12 34 chrY 13040388 13042209 -38471375 - L1PA8 LINE L1 -4258 2229 368 276 100 0 0 chrY 13042209 13042249 -38471335 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 20735 90 13 25 chrY 13042249 13046193 -38467391 - L1PA6 LINE L1 -17 6452 2545 6239 165 45 3 chrY 13046193 13047318 -38466266 - L1PA6 LINE L1 -5283 1178 6 195 100 0 0 chrY 13047349 13047379 -38466205 + (CA)n Simple_repeat Simple_repeat 1 30 0 624 279 14 24 chrY 13047469 13047677 -38465907 + MER20 DNA MER1_type 2 207 -12 2446 181 2 2 chrY 13048519 13048983 -38464601 + L1PA13 LINE L1 5697 6160 -3 243 311 0 14 chrY 13050240 13050314 -38463270 - L2 LINE L2 -1 3312 3240 1174 225 58 7 chrY 13050338 13050614 -38462970 + AluJo SINE Alu 3 292 -10 24 0 0 0 chrY 13051490 13051514 -38462070 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chrY 13054130 13054162 -38459422 + AT_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chrY 13054316 13054340 -38459244 + (TG)n Simple_repeat Simple_repeat 2 25 0 3066 156 39 77 chrY 13054889 13055709 -38457875 - LTR12 LTR ERV1 0 1528 671 1999 107 10 10 chrY 13055709 13056000 -38457584 + AluY SINE Alu 11 301 -10 3066 156 39 77 chrY 13056000 13056643 -38456941 - LTR12 LTR ERV1 -857 671 5 732 185 31 21 chrY 13056699 13056925 -38456659 + AluSx SINE Alu 3 307 -3 1443 196 30 33 chrY 13057576 13057877 -38455707 - AluJb SINE Alu 0 312 13 617 227 28 150 chrY 13058885 13059378 -38454206 + MLT1D LTR MaLR 69 501 -4 676 161 40 8 chrY 13059668 13059792 -38453792 - AluJ SINE Alu -29 283 156 1551 144 39 0 chrY 13059867 13060096 -38453488 - AluSq SINE Alu -20 293 56 633 209 72 0 chrY 13060147 13060286 -38453298 - AluJ SINE Alu -161 151 3 285 313 201 22 chrY 13060688 13060867 -38452717 + MIR SINE MIR 45 255 -7 183 130 87 43 chrY 13061926 13061972 -38451612 - MIR3 SINE MIR -10 198 151 1781 153 28 7 chrY 13062132 13062420 -38451164 - AluSx SINE Alu -18 294 1 1373 211 11 0 chrY 13063122 13063402 -38450182 + AluJb SINE Alu 22 304 -8 198 91 0 0 chrY 13063461 13063494 -38450090 + (TG)n Simple_repeat Simple_repeat 1 33 0 26 30 0 0 chrY 13064075 13064108 -38449476 + AT_rich Low_complexity Low_complexity 1 33 0 2200 137 0 0 chrY 13064330 13064685 -38448899 - AluSq SINE Alu 0 313 1 21 36 0 0 chrY 13065183 13065211 -38448373 + AT_rich Low_complexity Low_complexity 1 28 0 207 351 0 14 chrY 13065519 13065593 -38447991 - MIR3 SINE MIR -1 207 135 965 127 13 0 chrY 13065866 13066023 -38447561 + L1PA7 LINE L1 5993 6151 -3 24 0 0 0 chrY 13066251 13066275 -38447309 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chrY 13066654 13066678 -38446906 + (TG)n Simple_repeat Simple_repeat 1 24 0 3010 84 2 2 chrY 13066833 13067236 -38446348 - L1PA7 LINE L1 -15 6139 5737 258 148 0 0 chrY 13067419 13067473 -38446111 + (CAT)n Simple_repeat Simple_repeat 2 55 0 536 265 37 16 chrY 13067654 13067843 -38445741 + MLT1C LTR MaLR 1 193 -274 360 218 53 101 chrY 13069732 13069886 -38443698 + MER5A DNA MER1_type 2 162 -27 548 240 22 11 chrY 13069928 13070107 -38443477 - Charlie2 DNA MER1_type 0 2862 2682 542 248 53 102 chrY 13070110 13070413 -38443171 + MLT1C LTR MaLR 171 458 -9 1123 308 70 17 chrY 13070660 13071131 -38442453 + MLT1E LTR MaLR 55 550 -43 708 174 0 116 chrY 13071333 13071505 -38442079 + FRAM SINE Alu 1 152 -14 242 253 121 33 chrY 13073155 13073246 -38440338 - L2 LINE L2 -267 3005 2907 721 249 19 24 chrY 13073497 13073702 -38439882 + MER58A DNA MER1_type 21 224 0 485 278 38 15 chrY 13073813 13073946 -38439638 + MER5A DNA MER1_type 48 183 -6 2234 101 10 10 chrY 13073957 13074265 -38439319 - AluY SINE Alu -3 308 1 535 177 7 7 chrY 13074589 13074730 -38438854 + (ATG)n Simple_repeat Simple_repeat 1 141 0 383 200 0 17 chrY 13074761 13074881 -38438703 + (ATG)n Simple_repeat Simple_repeat 3 120 0 185 273 0 0 chrY 13075009 13075053 -38438531 + L2 LINE L2 2325 2368 -946 182 303 0 66 chrY 13075729 13075805 -38437779 - L2 LINE L2 -559 2755 2685 21 0 0 0 chrY 13076290 13076311 -38437273 + AT_rich Low_complexity Low_complexity 1 21 0 1677 155 64 4 chrY 13076937 13077227 -38436357 + AluSg SINE Alu 1 306 0 21 0 0 0 chrY 13077249 13077270 -38436314 + AT_rich Low_complexity Low_complexity 1 21 0 1326 226 7 20 chrY 13077522 13077814 -38435770 + AluJo SINE Alu 11 298 -14 21 0 0 0 chrY 13078024 13078045 -38435539 + AT_rich Low_complexity Low_complexity 1 21 0 616 217 23 0 chrY 13078999 13079128 -38434456 + FLAM_A SINE Alu 1 132 -1 242 250 0 0 chrY 13079370 13079438 -38434146 - L1 LINE L1 -1140 5006 4939 342 357 63 30 chrY 13080190 13080554 -38433030 - L1 LINE L1 -1713 4433 4058 24 32 0 0 chrY 13081272 13081303 -38432281 + AT_rich Low_complexity Low_complexity 1 31 0 417 298 32 26 chrY 13081367 13081713 -38431871 - L1 LINE L1 -2877 3269 2922 204 200 0 0 chrY 13081797 13081847 -38431737 + (TA)n Simple_repeat Simple_repeat 2 51 0 206 179 18 0 chrY 13082045 13082101 -38431483 + (TG)n Simple_repeat Simple_repeat 1 57 0 1551 151 35 19 chrY 13082205 13082342 -38431242 - AluSx SINE Alu -38 274 130 2034 146 0 0 chrY 13082342 13082643 -38430941 - AluSx SINE Alu -11 301 1 1551 151 35 19 chrY 13082643 13082764 -38430820 - AluSx SINE Alu -182 130 12 226 245 157 75 chrY 13083794 13083953 -38429631 - HAL1 LINE L1 -890 1617 1446 679 150 0 0 chrY 13084658 13084758 -38428826 + AluS SINE Alu 1 100 -213 23 54 0 0 chrY 13084897 13084934 -38428650 + AT_rich Low_complexity Low_complexity 1 37 0 1661 181 3 7 chrY 13085099 13085402 -38428182 + AluSx SINE Alu 1 302 -10 22 88 0 0 chrY 13085793 13085850 -38427734 + AT_rich Low_complexity Low_complexity 1 57 0 2098 236 30 14 chrY 13085851 13086428 -38427156 - L1MC3 LINE L1 -1 7784 7199 228 268 71 31 chrY 13086429 13086556 -38427028 - MLT1F1 LTR MaLR -424 143 12 412 239 34 0 chrY 13086556 13086673 -38426911 - L1MC3 LINE L1 -714 7071 6951 317 216 0 27 chrY 13086682 13086756 -38426828 - FLAM SINE Alu -6 127 63 463 243 79 36 chrY 13086798 13086938 -38426646 - L1PA16 LINE L1 -14 6152 6007 1012 196 144 88 chrY 13087265 13087339 -38426245 - MLT1A1 LTR MaLR -5 360 292 1494 201 0 31 chrY 13087339 13087627 -38425957 - AluJo SINE Alu -22 290 12 1012 196 144 88 chrY 13087627 13087893 -38425691 - MLT1A1 LTR MaLR -73 292 1 861 237 0 21 chrY 13088685 13088875 -38424709 - AluJo SINE Alu -126 186 1 249 366 11 32 chrY 13088977 13089070 -38424514 - L2 LINE L2 -195 3077 2987 1085 193 81 49 chrY 13089180 13089465 -38424119 - AluJb SINE Alu -8 304 11 22 35 0 0 chrY 13089504 13089533 -38424051 + AT_rich Low_complexity Low_complexity 1 29 0 2165 200 11 0 chrY 13089849 13090300 -38423284 + L1PA16 LINE L1 5708 6163 -3 407 98 33 49 chrY 13091040 13091162 -38422422 + (TCTA)n Simple_repeat Simple_repeat 4 123 0 1238 168 16 110 chrY 13091261 13091519 -38422065 - MLT1A1 LTR MaLR -84 281 55 3777 152 8 8 chrY 13091519 13092175 -38421409 - L1MA2 LINE L1 0 6304 5649 1238 168 16 110 chrY 13092175 13092225 -38421359 - MLT1A1 LTR MaLR -310 55 2 1516 156 0 0 chrY 13092388 13092612 -38420972 + AluSg/x SINE Alu 68 291 -21 627 201 224 6 chrY 13094064 13094243 -38419341 + MER20 DNA MER1_type 1 218 -1 28 48 0 0 chrY 13094835 13094877 -38418707 + AT_rich Low_complexity Low_complexity 1 42 0 1399 199 7 21 chrY 13094878 13095159 -38418425 - AluJo SINE Alu -23 289 13 460 275 38 38 chrY 13095894 13096156 -38417428 + L1M4 LINE L1 2288 2549 -3597 275 179 0 13 chrY 13096192 13096270 -38417314 + (CA)n Simple_repeat Simple_repeat 2 78 0 1594 202 137 8 chrY 13097430 13097802 -38415782 - MSTA LTR MaLR 0 428 9 209 128 0 26 chrY 13099183 13099222 -38414362 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 274 236 139 0 chrY 13099386 13099458 -38414126 + L1ME LINE L1 5625 5706 -415 334 352 0 0 chrY 13099575 13099717 -38413867 + (TA)n Simple_repeat Simple_repeat 2 143 0 1520 204 10 16 chrY 13100042 13100356 -38413228 + AluJo SINE Alu 1 312 0 2131 138 3 0 chrY 13100359 13100670 -38412914 + AluSp SINE Alu 2 313 0 7627 23 0 7 chrY 13101017 13101037 -38412547 + L1PA2 LINE L1 4498 4517 -1638 2317 93 0 3 chrY 13101037 13101348 -38412236 + AluY SINE Alu 2 311 0 7627 23 0 7 chrY 13101348 13102988 -38410596 + L1PA2 LINE L1 4517 6151 -4 243 0 0 0 chrY 13103010 13103037 -38410547 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 219 69 0 0 chrY 13103120 13103149 -38410435 + (T)n Simple_repeat Simple_repeat 1 29 0 864 199 150 53 chrY 13104381 13104742 -38408842 - MSTD LTR MaLR 0 396 1 358 344 146 29 chrY 13104983 13105670 -38407914 + L2 LINE L2 1715 2481 -833 550 191 68 7 chrY 13105904 13106039 -38407545 - MSTC LTR MaLR -11 417 290 1585 202 3 13 chrY 13106506 13106818 -38406766 - AluJo SINE Alu -2 310 2 1192 213 59 31 chrY 13107655 13107784 -38405800 + AluJo SINE Alu 2 126 -176 1320 192 6 91 chrY 13107784 13108102 -38405482 - AluSx SINE Alu -21 291 1 1192 213 59 31 chrY 13108102 13108259 -38405325 + AluJo SINE Alu 126 296 -6 197 319 42 0 chrY 13109360 13109432 -38404152 - MIR SINE MIR 0 262 188 244 304 111 61 chrY 13109696 13109877 -38403707 - MIR SINE MIR -66 196 7 1932 164 10 34 chrY 13109932 13110316 -38403268 - THE1C LTR MaLR 0 375 1 246 335 97 36 chrY 13110748 13111026 -38402558 - L2 LINE L2 0 3313 3019 1232 223 88 4 chrY 13111514 13111788 -38401796 + AluJo SINE Alu 1 297 -5 2008 196 2 51 chrY 13113090 13113544 -38400040 - MSTB1 LTR MaLR 0 432 1 216 250 0 0 chrY 13113979 13114023 -38399561 + L2 LINE L2 3217 3260 -12 186 211 0 0 chrY 13114376 13114414 -38399170 + MIR SINE MIR 101 138 -70 434 161 97 0 chrY 13115241 13115334 -38398250 - L1MB3 LINE L1 -1 6182 6081 751 195 0 50 chrY 13115730 13115889 -38397695 - AluJo SINE Alu -161 151 1 924 281 111 87 chrY 13115897 13116156 -38397428 - L2 LINE L2 -159 3154 2903 2187 137 36 17 chrY 13116156 13116513 -38397071 - THE1B LTR MaLR 0 364 1 924 281 111 87 chrY 13116513 13117616 -38395968 - L2 LINE L2 -410 2903 1756 33 25 0 0 chrY 13117616 13117656 -38395928 + AT_rich Low_complexity Low_complexity 1 40 0 428 171 85 0 chrY 13117656 13117738 -38395846 + THE1B LTR MaLR 83 171 -193 46 45 0 0 chrY 13117738 13117805 -38395779 + AT_rich Low_complexity Low_complexity 1 67 0 540 350 46 8 chrY 13117888 13118125 -38395459 - MLT1I LTR MaLR -73 336 91 1083 326 67 22 chrY 13118224 13118804 -38394780 - L2 LINE L2 -1657 1657 1052 724 201 24 30 chrY 13121789 13121953 -38391631 - AluJo SINE Alu -149 163 1 1193 239 18 18 chrY 13122233 13122505 -38391079 - AluJo SINE Alu -24 288 17 21 0 0 0 chrY 13122699 13122720 -38390864 + AT_rich Low_complexity Low_complexity 1 21 0 1275 243 15 35 chrY 13124488 13124889 -38388695 - MLT1E3 LTR MaLR 0 624 201 1226 231 59 35 chrY 13125084 13125456 -38388128 - MLT1C LTR MaLR 0 467 87 286 228 0 0 chrY 13125457 13125514 -38388070 + Tigger7 DNA MER2_type 1 57 -648 672 159 106 0 chrY 13125557 13125689 -38387895 + Tigger7 DNA MER2_type 2329 2474 -13 231 118 0 0 chrY 13125706 13125740 -38387844 - MLT1C LTR MaLR -380 87 54 590 60 12 0 chrY 13125976 13126059 -38387525 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 303 235 59 24 chrY 13126107 13126192 -38387392 + L1MC4 LINE L1 6616 6703 -1339 855 169 34 6 chrY 13126207 13126542 -38387042 + (TAGA)n Simple_repeat Simple_repeat 1 344 0 186 222 111 19 chrY 13126673 13126727 -38386857 + L2 LINE L2 3156 3214 -58 293 254 0 0 chrY 13127256 13127315 -38386269 - MLT1D LTR MaLR -169 336 278 1450 194 54 6 chrY 13127586 13127900 -38385684 - L1MA5A LINE L1 -31 6266 5938 1105 144 77 29 chrY 13128012 13128220 -38385364 - MER30 DNA MER1_type -10 220 3 336 248 77 34 chrY 13129436 13129553 -38384031 + MIR SINE MIR 42 163 -99 1376 239 30 27 chrY 13129857 13129983 -38383601 + L1MC3 LINE L1 6743 6867 -918 336 48 0 0 chrY 13129983 13130025 -38383559 + (CA)n Simple_repeat Simple_repeat 1 42 0 1376 239 30 27 chrY 13130025 13130198 -38383386 + L1MC3 LINE L1 6867 7038 -747 1056 224 112 86 chrY 13130198 13130689 -38382895 - MLT1D LTR MaLR 0 505 2 1376 239 30 27 chrY 13130689 13130775 -38382809 + L1MC3 LINE L1 7038 7133 -652 243 0 0 0 chrY 13130775 13130802 -38382782 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1376 239 30 27 chrY 13130802 13130816 -38382768 + L1MC3 LINE L1 7133 7145 -640 574 254 31 0 chrY 13130818 13130948 -38382636 - AluJo SINE Alu -178 134 1 16843 49 3 1 chrY 13130958 13133851 -38379733 - L1PA4 LINE L1 -3 6152 3256 2540 222 26 14 chrY 13133859 13134480 -38379104 + L1MC3 LINE L1 7151 7778 -7 1001 219 6 0 chrY 13135201 13135407 -38378177 - AluSg/x SINE Alu 0 306 100 231 36 0 0 chrY 13135591 13135619 -38377965 + (TA)n Simple_repeat Simple_repeat 2 29 0 273 247 0 0 chrY 13135666 13135747 -38377837 + (TA)n Simple_repeat Simple_repeat 1 81 0 247 196 0 0 chrY 13135752 13135808 -38377776 - L1MC4 LINE L1 -1339 6703 6648 399 41 0 0 chrY 13135879 13135928 -38377656 + (TA)n Simple_repeat Simple_repeat 2 50 0 1043 223 4 0 chrY 13135972 13136201 -38377383 - AluSg/x SINE Alu 0 312 83 883 232 24 40 chrY 13137896 13138146 -38375438 + L1MB7 LINE L1 5929 6174 -10 1804 170 3 3 chrY 13138224 13138518 -38375066 + AluSx SINE Alu 1 294 -18 412 247 50 93 chrY 13138914 13139025 -38374559 + MIR SINE MIR 79 180 -82 1348 199 30 30 chrY 13139025 13139322 -38374262 + AluJo SINE Alu 1 297 -15 412 247 50 93 chrY 13139322 13139392 -38374192 + MIR SINE MIR 180 252 -10 253 302 63 44 chrY 13139506 13139711 -38373873 + L1ME LINE L1 5366 5574 -590 711 335 82 20 chrY 13139755 13140208 -38373376 - MLT1H LTR MaLR 0 549 69 268 267 35 12 chrY 13140333 13140419 -38373165 + Charlie2 DNA MER1_type 43 130 -2652 1793 167 3 3 chrY 13140589 13140883 -38372701 + AluSq SINE Alu 6 299 -14 26 50 0 0 chrY 13142119 13142159 -38371425 + AT_rich Low_complexity Low_complexity 1 40 0 1150 213 76 11 chrY 13142258 13142521 -38371063 - AluSg SINE Alu -20 290 11 23 54 0 0 chrY 13142694 13142731 -38370853 + AT_rich Low_complexity Low_complexity 1 37 0 2152 236 41 78 chrY 13143233 13143370 -38370214 + L1MB3 LINE L1 4590 4730 -1448 5973 90 18 22 chrY 13143370 13144576 -38369008 + L1PA7 LINE L1 4934 6141 -13 2152 236 41 78 chrY 13144576 13144671 -38368913 + L1MB3 LINE L1 4730 4827 -1351 2062 162 46 44 chrY 13144671 13145103 -38368481 - Tigger2a DNA MER2_type 0 434 2 2152 236 41 78 chrY 13145103 13145761 -38367823 + L1MB3 LINE L1 4827 5391 -787 1389 209 3 52 chrY 13145761 13145905 -38367679 + AluSx SINE Alu 1 151 -161 2312 65 0 3 chrY 13145905 13146198 -38367386 + AluY SINE Alu 1 292 -19 1389 209 3 52 chrY 13146198 13146379 -38367205 + AluSx SINE Alu 151 310 -2 2152 236 41 78 chrY 13146379 13146941 -38366643 + L1MB3 LINE L1 5391 5972 -206 222 37 0 0 chrY 13149193 13149220 -38364364 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 306 0 0 0 chrY 13150569 13150603 -38362981 + (CA)n Simple_repeat Simple_repeat 2 35 0 2895 3 0 0 chrY 13151379 13151690 -38361894 + AluYa5 SINE Alu 1 311 0 706 248 178 53 chrY 13153173 13153413 -38360171 - MLT1C LTR MaLR 0 467 258 1758 158 12 43 chrY 13153413 13153735 -38359849 - AluSx SINE Alu 0 312 1 706 248 178 53 chrY 13153735 13153905 -38359679 - MLT1C LTR MaLR -209 258 6 1403 214 47 7 chrY 13155596 13155895 -38357689 + AluJb SINE Alu 1 311 -1 205 278 165 43 chrY 13156637 13156752 -38356832 - MIR SINE MIR -56 152 24 223 316 13 13 chrY 13156802 13156881 -38356703 + L2 LINE L2 3189 3267 -46 3002 188 13 80 chrY 13156947 13157734 -38355850 + L1MB3 LINE L1 5450 6183 0 642 201 54 71 chrY 13157874 13158098 -38355486 - L1MB3 LINE L1 -217 5957 5738 616 221 120 23 chrY 13158099 13158316 -38355268 + L1MB3 LINE L1 5946 6183 0 1911 163 0 0 chrY 13158921 13159209 -38354375 + AluSg SINE Alu 1 288 -22 3095 161 12 83 chrY 13159210 13159781 -38353803 - L1PB4 LINE L1 -10 6146 5536 405 0 0 0 chrY 13159781 13159826 -38353758 + (TG)n Simple_repeat Simple_repeat 2 46 0 2042 149 0 0 chrY 13159830 13160126 -38353458 - AluSc SINE Alu -13 296 1 3095 161 12 83 chrY 13160126 13160286 -38353298 - L1PB4 LINE L1 -623 5533 5462 974 238 103 3 chrY 13160739 13161029 -38352555 - LTR48B LTR ERV1 -325 319 1 959 251 132 110 chrY 13162548 13163277 -38350307 - LTR1B LTR ERV1 -81 745 1 2230 152 22 5 chrY 13164015 13164384 -38349200 + THE1C LTR MaLR 1 375 0 2449 105 22 6 chrY 13164384 13164745 -38348839 + THE1C-int LTR MaLR 1 367 -1213 * 3457 160 30 7 chrY 13164738 13165339 -38348245 + THE1C-int LTR MaLR 966 1580 0 2285 144 16 3 chrY 13165340 13165707 -38347877 + THE1C LTR MaLR 2 373 -2 1051 200 85 0 chrY 13166272 13166532 -38347052 + L1MA4 LINE L1 6014 6295 -5 28 29 0 0 chrY 13166651 13166686 -38346898 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chrY 13166776 13166803 -38346781 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chrY 13166988 13167011 -38346573 + AT_rich Low_complexity Low_complexity 1 23 0 200 333 43 8 chrY 13167049 13167166 -38346418 - MIR SINE MIR -29 233 113 1125 233 0 13 chrY 13167915 13168151 -38345433 - AluJo SINE Alu -31 281 49 1474 280 71 17 chrY 13168151 13168552 -38345032 - MER90 LTR ERV1 -60 554 117 222 37 0 0 chrY 13168552 13168579 -38345005 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1474 280 71 17 chrY 13168579 13168699 -38344885 - MER90 LTR ERV1 -497 117 5 902 128 0 0 chrY 13169705 13169830 -38343754 - AluY SINE Alu -20 291 167 399 228 145 21 chrY 13171139 13171284 -38342300 + MIR SINE MIR 79 241 -21 186 133 0 0 chrY 13171287 13171317 -38342267 + (CA)n Simple_repeat Simple_repeat 2 31 0 211 280 48 6 chrY 13171545 13171713 -38341871 + (TA)n Simple_repeat Simple_repeat 1 175 0 1573 221 7 0 chrY 13172005 13172303 -38341281 + AluSx SINE Alu 1 300 -12 619 283 35 0 chrY 13175380 13175553 -38338031 + MER20 DNA MER1_type 41 219 0 687 320 0 0 chrY 13175631 13175828 -38337756 + MER20 DNA MER1_type 23 219 0 1979 175 14 11 chrY 13175932 13176297 -38337287 + MSTB1 LTR MaLR 1 366 -66 1199 252 13 23 chrY 13176297 13176606 -38336978 - AluJo SINE Alu -1 311 6 419 109 16 0 chrY 13176613 13176677 -38336907 + MSTB1 LTR MaLR 368 432 0 247 203 14 81 chrY 13176679 13176753 -38336831 + MIR SINE MIR 52 120 -142 528 146 0 0 chrY 13177663 13177752 -38335832 + (A)n Simple_repeat Simple_repeat 1 89 0 246 325 89 57 chrY 13178021 13178178 -38335406 + MER91A DNA MER1_type 13 174 -22 219 235 29 44 chrY 13178617 13178685 -38334899 - L3 LINE CR1 -473 1104 1038 1256 225 11 8 chrY 13179000 13179262 -38334322 - AluJo SINE Alu -43 269 7 297 290 159 32 chrY 13179789 13180375 -38333209 - L1ME3A LINE L1 -221 6018 5359 300 303 127 47 chrY 13180376 13180457 -38333127 - L1ME3A LINE L1 -878 5337 5264 2144 123 0 0 chrY 13180457 13180741 -38332843 - AluSg SINE Alu -16 294 11 300 303 127 47 chrY 13180741 13180959 -38332625 - L1ME3A LINE L1 -951 5264 5014 463 301 74 68 chrY 13181014 13181529 -38332055 - L1ME3A LINE L1 -1337 4878 4361 320 291 41 73 chrY 13181535 13181875 -38331709 - L1ME3A LINE L1 -1894 4321 3993 2129 131 3 3 chrY 13181897 13182232 -38331352 - AluSx SINE Alu 0 312 1 249 229 60 6 chrY 13182271 13182437 -38331147 + (TA)n Simple_repeat Simple_repeat 2 176 0 668 176 0 0 chrY 13182750 13182858 -38330726 - FRAM SINE Alu -9 167 60 1783 158 11 11 chrY 13182887 13183202 -38330382 + AluSx SINE Alu 3 317 0 317 274 125 30 chrY 13183309 13183637 -38329947 - L1ME3A LINE L1 -2935 3280 2922 595 324 45 59 chrY 13183690 13184202 -38329382 - L1ME3A LINE L1 -3435 2780 2276 1450 185 9 68 chrY 13184342 13184666 -38328918 + AluJo SINE Alu 1 305 -7 309 297 141 32 chrY 13184980 13185229 -38328355 - L1ME3A LINE L1 -4616 1780 1505 1890 137 11 0 chrY 13185268 13185539 -38328045 + AluSq SINE Alu 10 283 -30 51 0 0 0 chrY 13185545 13185596 -38327988 + AT_rich Low_complexity Low_complexity 1 51 0 323 238 36 12 chrY 13185602 13185686 -38327898 - L1MC4 LINE L1 -1343 6699 6614 1249 219 15 25 chrY 13186397 13186671 -38326913 - AluJo SINE Alu -39 273 3 951 210 15 10 chrY 13187442 13187642 -38325942 - AluJb SINE Alu -26 286 86 2214 62 0 28 chrY 13188077 13188401 -38325183 - AluY SINE Alu 0 316 1 183 382 24 16 chrY 13188751 13188874 -38324710 + MIR SINE MIR 131 254 -8 981 269 45 52 chrY 13189507 13189972 -38323612 + L1M4 LINE L1 4416 4877 -1269 347 217 12 12 chrY 13190489 13190572 -38323012 - MER20 DNA MER1_type -3 216 134 24 0 0 0 chrY 13190614 13190638 -38322946 + AT_rich Low_complexity Low_complexity 1 24 0 1371 221 7 17 chrY 13190664 13190962 -38322622 + AluJo SINE Alu 1 295 -17 2505 196 44 21 chrY 13192438 13192963 -38320621 + MER44D DNA MER2_type 14 605 0 1227 283 3 6 chrY 13192967 13193310 -38320274 - MLT1A1-int LTR MaLR -1393 342 1 1437 205 16 53 chrY 13193310 13193686 -38319898 - MLT1A1 LTR MaLR 0 365 4 25 51 0 0 chrY 13195672 13195711 -38317873 + AT_rich Low_complexity Low_complexity 1 39 0 10352 147 11 31 chrY 13198216 13200646 -38312938 + L1PA7 LINE L1 172 2606 -3855 * 13018 129 4 9 chrY 13200643 13202751 -38310833 + L1PA7 LINE L1 3247 5343 -1118 6074 88 10 8 chrY 13202837 13203956 -38309628 + L1PA7 LINE L1 5346 6463 -6 188 67 33 0 chrY 13204271 13204301 -38309283 + (CA)n Simple_repeat Simple_repeat 2 32 0 319 238 50 6 chrY 13204970 13205130 -38308454 + (TA)n Simple_repeat Simple_repeat 2 168 0 191 113 65 0 chrY 13205161 13205223 -38308361 + (TA)n Simple_repeat Simple_repeat 1 66 0 23 33 0 0 chrY 13205557 13205587 -38307997 + AT_rich Low_complexity Low_complexity 1 30 0 309 207 0 0 chrY 13206406 13206488 -38307096 + GA-rich Low_complexity Low_complexity 1 82 0 1742 164 3 28 chrY 13206538 13206825 -38306759 + AluJo SINE Alu 3 282 -30 396 0 0 0 chrY 13206828 13206872 -38306712 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 742 261 54 0 chrY 13207484 13207706 -38305878 - L1MA3 LINE L1 -1 6304 6071 1561 193 7 20 chrY 13207706 13208006 -38305578 - AluJo SINE Alu -16 296 1 582 183 17 36 chrY 13208275 13208455 -38305129 + MLT2C1 LTR ERVL 193 433 -31 234 271 211 49 chrY 13208668 13208952 -38304632 + L2 LINE L2 1562 1891 -1423 1435 169 45 87 chrY 13209243 13209621 -38303963 + MLT1A1 LTR MaLR 4 365 0 22 0 0 0 chrY 13210570 13210592 -38302992 + AT_rich Low_complexity Low_complexity 1 22 0 571 289 118 53 chrY 13211085 13211534 -38302050 + MLT1G1 LTR MaLR 111 588 -7 3635 157 14 16 chrY 13212982 13213172 -38300412 + L1PA13 LINE L1 5496 5685 -478 2626 30 0 0 chrY 13213172 13213470 -38300114 + AluY SINE Alu 1 298 -13 3635 157 14 16 chrY 13213470 13213946 -38299638 + L1PA13 LINE L1 5685 6160 -3 798 170 0 20 chrY 13214257 13214279 -38299305 + L1P4 LINE L1 5470 5491 -670 2486 58 3 10 chrY 13214279 13214589 -38298995 + AluY SINE Alu 3 310 -1 798 170 0 20 chrY 13214589 13214713 -38298871 + L1P4 LINE L1 5491 5613 -548 694 284 0 20 chrY 13214817 13215014 -38298570 + MER20 DNA MER1_type 25 217 -2 1164 139 11 0 chrY 13215216 13215403 -38298181 - L1PA13 LINE L1 -74 6089 5901 385 188 10 10 chrY 13215698 13215799 -38297785 + CT-rich Low_complexity Low_complexity 3 103 0 1303 210 10 35 chrY 13215802 13216119 -38297465 - AluJo SINE Alu 0 310 1 823 269 61 103 chrY 13216967 13217618 -38295966 - MLT1E2 LTR MaLR 0 626 1 1888 183 0 0 chrY 13217752 13218063 -38295521 - AluSx SINE Alu -1 311 1 1306 196 91 7 chrY 13218188 13218464 -38295120 - AluJo SINE Alu -3 299 1 21 0 0 0 chrY 13219309 13219330 -38294254 + AT_rich Low_complexity Low_complexity 1 21 0 214 330 47 9 chrY 13220927 13221033 -38292551 - L2 LINE L2 0 3313 3204 1696 167 26 7 chrY 13221301 13221607 -38291977 + AluJo SINE Alu 1 312 0 360 0 0 0 chrY 13221645 13221685 -38291899 + (TG)n Simple_repeat Simple_repeat 2 41 0 1933 125 0 41 chrY 13222490 13222809 -38290775 + AluY SINE Alu 1 306 -5 251 308 125 33 chrY 13223192 13223585 -38289999 - L1ME3A LINE L1 -229 5941 5513 1819 163 7 0 chrY 13223679 13223968 -38289616 - AluSx SINE Alu -21 291 1 540 318 0 32 chrY 13224613 13224802 -38288782 - MLT1E2 LTR MaLR -18 608 426 235 123 0 88 chrY 13225040 13225097 -38288487 + L1MA9 LINE L1 5777 5828 -463 1938 48 0 8 chrY 13225105 13225353 -38288231 + AluY SINE Alu 1 246 -65 1020 178 56 0 chrY 13225380 13225594 -38287990 + L1MA9 LINE L1 5814 6039 -273 2242 107 0 0 chrY 13226080 13226389 -38287195 - AluY SINE Alu -2 309 1 21 0 0 0 chrY 13226668 13226689 -38286895 + AT_rich Low_complexity Low_complexity 1 21 0 232 398 8 0 chrY 13226933 13227061 -38286523 - HAL1 LINE L1 -987 1520 1392 281 82 20 0 chrY 13229300 13229349 -38284235 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 285 153 45 9 chrY 13229433 13229544 -38284040 + (TA)n Simple_repeat Simple_repeat 2 116 0 228 67 0 0 chrY 13229587 13229617 -38283967 + (TATATG)n Simple_repeat Simple_repeat 2 31 0 399 288 97 67 chrY 13229621 13229982 -38283602 + L1MC5 LINE L1 6820 7191 -770 1094 153 11 0 chrY 13229988 13230165 -38283419 - THE1C LTR MaLR 0 375 197 189 0 0 0 chrY 13230336 13230357 -38283227 + (A)n Simple_repeat Simple_repeat 1 21 0 234 321 12 12 chrY 13230763 13230844 -38282740 - MER5B DNA MER1_type -62 116 36 299 173 12 0 chrY 13231018 13231099 -38282485 + CT-rich Low_complexity Low_complexity 2 83 0 353 180 56 9 chrY 13231354 13231680 -38281904 + (TA)n Simple_repeat Simple_repeat 1 341 0 234 200 32 48 chrY 13231684 13231809 -38281775 + (TATAA)n Simple_repeat Simple_repeat 2 124 0 284 154 41 45 chrY 13231821 13232074 -38281510 + (TATAA)n Simple_repeat Simple_repeat 1 251 0 180 53 79 0 chrY 13232093 13232131 -38281453 + (TA)n Simple_repeat Simple_repeat 2 42 0 181 326 67 30 chrY 13232709 13232844 -38280740 + L2 LINE L2 2490 2629 -685 339 300 128 0 chrY 13233214 13233441 -38280143 + L1M4 LINE L1 5037 5292 -854 1210 202 39 4 chrY 13233464 13233795 -38279789 - Charlie3 DNA MER1_type 0 2712 35 670 302 118 20 chrY 13234020 13234411 -38279173 + MLT1D LTR MaLR 77 505 0 317 360 20 47 chrY 13234427 13234577 -38279007 + L2 LINE L2 3122 3267 -5 1927 139 3 25 chrY 13234646 13234962 -38278622 + AluY SINE Alu 1 309 -2 200 108 0 27 chrY 13235176 13235213 -38278371 + (TA)n Simple_repeat Simple_repeat 2 37 0 22 56 0 0 chrY 13236153 13236189 -38277395 + AT_rich Low_complexity Low_complexity 1 36 0 200 297 47 0 chrY 13236391 13236455 -38277129 + L2 LINE L2 3206 3272 0 1445 188 4 12 chrY 13236824 13237080 -38276504 - AluSx SINE Alu -13 299 46 24 0 0 0 chrY 13237965 13237989 -38275595 + AT_rich Low_complexity Low_complexity 1 24 0 1552 178 19 4 chrY 13237990 13238249 -38275335 + AluSx SINE Alu 1 263 -49 200 59 29 0 chrY 13238263 13238297 -38275287 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chrY 13238299 13238327 -38275257 + AT_rich Low_complexity Low_complexity 1 28 0 954 142 0 0 chrY 13238345 13238486 -38275098 - AluSg/x SINE Alu -16 294 154 1621 170 81 7 chrY 13239064 13239335 -38274249 + AluSx SINE Alu 3 293 -19 220 312 13 0 chrY 13240178 13240255 -38273329 + (TA)n Simple_repeat Simple_repeat 2 79 0 1980 152 83 0 chrY 13240742 13241078 -38272506 - THE1B LTR MaLR 0 364 1 511 116 11 11 chrY 13241705 13241800 -38271784 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 834 246 86 52 chrY 13242066 13242428 -38271156 - LTR8A LTR ERV1 0 727 354 390 40 0 0 chrY 13242450 13242500 -38271084 - THE1C LTR MaLR -325 50 1 318 188 0 0 chrY 13242768 13242832 -38270752 + L1PA15 LINE L1 6087 6150 -15 255 146 0 0 chrY 13242858 13242906 -38270678 - LTR8A LTR ERV1 -405 322 275 331 137 0 0 chrY 13242907 13242958 -38270626 - pTR5 LTR ERV1 -2280 158 108 260 125 0 0 chrY 13242951 13242991 -38270593 - LTR12 LTR ERV1 -668 46 7 * 9115 129 7 21 chrY 13243007 13244539 -38269045 - HERV9 LTR ERV1 -3 8396 6887 * 26027 148 15 10 chrY 13244537 13249940 -38263644 - HERV9 LTR ERV1 -2831 5568 54 698 167 41 20 chrY 13249916 13250078 -38263506 - LTR12 LTR ERV1 -231 483 299 * 316 235 0 0 chrY 13250078 13250159 -38263425 - LTR30 LTR ERV1 -98 624 544 988 139 8 123 chrY 13250276 13250528 -38263056 - LTR12 LTR ERV1 -483 231 9 1495 159 10 14 chrY 13250528 13250823 -38262761 - LTR8A LTR ERV1 -433 294 1 1177 216 63 4 chrY 13253347 13253601 -38259983 - AluJo SINE Alu -41 271 3 475 207 13 0 chrY 13253975 13254125 -38259459 + CT-rich Low_complexity Low_complexity 1 152 0 380 265 0 17 chrY 13254179 13254360 -38259224 + CT-rich Low_complexity Low_complexity 2 179 0 1537 181 0 7 chrY 13255123 13255393 -38258191 - AluSx SINE Alu -2 310 43 1495 192 0 22 chrY 13255419 13255732 -38257852 + AluJo SINE Alu 1 306 -6 181 312 101 37 chrY 13255781 13255890 -38257694 + MIR3 SINE MIR 93 208 0 1606 214 0 3 chrY 13256292 13256596 -38256988 + AluJb SINE Alu 1 303 -9 452 207 9 0 chrY 13257036 13257147 -38256437 + (TATATG)n Simple_repeat Simple_repeat 3 114 0 271 44 44 0 chrY 13257805 13257850 -38255734 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 198 0 0 0 chrY 13258302 13258324 -38255260 + (TG)n Simple_repeat Simple_repeat 2 23 0 243 240 0 0 chrY 13259403 13259453 -38254131 + (CA)n Simple_repeat Simple_repeat 1 50 0 931 202 22 53 chrY 13259650 13259825 -38253759 - AluJo SINE Alu -5 307 139 1370 221 34 10 chrY 13259825 13260123 -38253461 - AluJo SINE Alu -7 305 1 931 202 22 53 chrY 13260123 13260175 -38253409 - AluJo SINE Alu -173 139 87 367 233 19 19 chrY 13260303 13260619 -38252965 + (TA)n Simple_repeat Simple_repeat 1 316 0 696 176 0 24 chrY 13261325 13261450 -38252134 + FLAM_C SINE Alu 2 123 -20 6829 73 3 3 chrY 13261454 13262377 -38251207 - MER11C LTR ERVK -148 923 1 2140 86 0 0 chrY 13262379 13262671 -38250913 - L1P LINE L1 -5851 295 4 286 280 28 0 chrY 13262695 13262802 -38250782 + MER113 DNA MER1_type? 199 308 -213 213 128 0 26 chrY 13262803 13262842 -38250742 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 219 276 0 0 chrY 13264061 13264159 -38249425 + GA-rich Low_complexity Low_complexity 4 101 0 676 190 6 17 chrY 13264173 13264352 -38249232 + GA-rich Low_complexity Low_complexity 1 177 0 357 229 23 23 chrY 13264383 13264558 -38249026 + GA-rich Low_complexity Low_complexity 4 178 0 219 204 0 0 chrY 13264606 13264655 -38248929 + GA-rich Low_complexity Low_complexity 3 51 0 1699 159 27 33 chrY 13265277 13265578 -38248006 - AluSg SINE Alu -11 299 1 221 209 15 0 chrY 13267197 13267264 -38246320 + (TA)n Simple_repeat Simple_repeat 1 68 0 300 330 122 27 chrY 13267484 13267672 -38245912 - MIR SINE MIR -10 252 47 704 230 65 10 chrY 13268641 13268841 -38244743 - MER20 DNA MER1_type 0 219 9 241 253 10 10 chrY 13273551 13273650 -38239934 + (TA)n Simple_repeat Simple_repeat 1 99 0 1464 206 16 0 chrY 13273651 13273962 -38239622 + MER7A DNA MER2_type 2 315 -31 329 301 29 12 chrY 13273989 13274162 -38239422 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 1253 199 71 0 chrY 13274222 13274518 -38239066 + MER44D DNA MER2_type 14 600 -9 240 232 0 29 chrY 13274521 13274590 -38238994 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 231 167 0 0 chrY 13274657 13274699 -38238885 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 234 305 24 12 chrY 13274838 13274920 -38238664 - L2 LINE L2 0 3272 3190 485 276 90 0 chrY 13277244 13277378 -38236206 - MIR SINE MIR -40 222 77 228 86 0 0 chrY 13277569 13277604 -38235980 + (CA)n Simple_repeat Simple_repeat 2 36 0 273 29 0 0 chrY 13279597 13279631 -38233953 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 312 225 0 0 chrY 13279634 13279705 -38233879 - AluJ/FRAM SINE Alu -2 300 230 1543 182 0 4 chrY 13279730 13279983 -38233601 - AluSx SINE Alu -60 252 1 327 121 0 0 chrY 13280074 13280132 -38233452 + (ATG)n Simple_repeat Simple_repeat 2 59 0 1898 170 0 3 chrY 13280890 13281196 -38232388 + AluSx SINE Alu 5 309 -3 1985 140 0 0 chrY 13281376 13281661 -38231923 + AluSg SINE Alu 1 285 -25 27 62 0 0 chrY 13282270 13282318 -38231266 + AT_rich Low_complexity Low_complexity 1 48 0 202 348 22 0 chrY 13283082 13283171 -38230413 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 418 178 30 21 chrY 13283385 13283488 -38230096 - L1MD3 LINE L1 -2 7987 7682 457 188 43 0 chrY 13283501 13283618 -38229966 - L1MA7 LINE L1 -11 6280 6159 1343 198 45 10 chrY 13283622 13283910 -38229674 - L1MA8 LINE L1 -243 6048 5751 301 144 22 55 chrY 13284143 13284324 -38229260 + (TA)n Simple_repeat Simple_repeat 2 176 0 202 130 43 29 chrY 13284347 13284416 -38229168 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 1205 114 0 23 chrY 13284914 13285090 -38228494 + AluSc SINE Alu 134 305 -4 243 173 0 0 chrY 13286273 13286325 -38227259 + T-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chrY 13286336 13286358 -38227226 + AT_rich Low_complexity Low_complexity 1 22 0 1350 179 199 14 chrY 13286400 13286751 -38226833 + MSTA LTR MaLR 13 428 0 215 194 0 0 chrY 13286989 13287025 -38226559 + (TGG)n Simple_repeat Simple_repeat 3 38 0 1430 209 4 4 chrY 13287059 13287332 -38226252 + AluJo SINE Alu 1 273 -39 298 238 71 0 chrY 13287372 13287456 -38226128 + L1MD3 LINE L1 7136 7225 -770 5756 153 1 2 chrY 13287973 13288893 -38224691 + L1P3 LINE L1 500 1418 -5043 6141 138 16 4 chrY 13288894 13289923 -38223661 + L1P3 LINE L1 2120 3161 -3300 * 40523 62 10 3 chrY 13289922 13295853 -38217731 + L1PA3 LINE L1 1 5977 -178 9093 130 10 2 chrY 13295865 13297314 -38216270 + L1P3 LINE L1 3775 5234 -1227 1518 227 67 61 chrY 13297316 13297822 -38215762 - LTR22 LTR ERVK 0 509 1 29355 131 14 4 chrY 13297822 13302290 -38211294 - HERVK22 LTR ERVK 0 6837 2325 4991 143 20 85 chrY 13302283 13303251 -38210333 - HERVK22 LTR ERVK -5932 905 1 * 1625 233 56 32 chrY 13303251 13303748 -38209836 - LTR22 LTR ERVK 0 509 1 5999 97 23 1 chrY 13303748 13304955 -38208629 + L1PA7 LINE L1 4916 6152 -2 31 0 0 0 chrY 13305363 13305394 -38208190 + AT_rich Low_complexity Low_complexity 1 31 0 216 182 0 0 chrY 13305456 13305500 -38208084 + (TG)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chrY 13305567 13305594 -38207990 + AT_rich Low_complexity Low_complexity 1 27 0 1697 181 10 7 chrY 13305987 13306286 -38207298 + AluSx SINE Alu 1 300 -12 1059 68 0 0 chrY 13306806 13306938 -38206646 + AluY SINE Alu 1 132 -179 35 0 0 0 chrY 13306938 13306973 -38206611 + AT_rich Low_complexity Low_complexity 1 35 0 1355 119 0 0 chrY 13306973 13307205 -38206379 + AluY SINE Alu 118 349 0 1516 153 8 28 chrY 13307684 13307939 -38205645 + AluSq SINE Alu 1 250 -63 23 0 0 0 chrY 13309350 13309373 -38204211 + AT_rich Low_complexity Low_complexity 1 23 0 842 285 82 17 chrY 13309649 13310115 -38203469 - L1ME3 LINE L1 -8 6154 5660 5812 108 10 8 chrY 13310181 13311043 -38202541 - L1PA7 LINE L1 -15 6454 5591 * 40162 69 3 3 chrY 13311020 13313555 -38200029 - L1PA4 LINE L1 -5 6465 3933 2794 19 0 0 chrY 13313555 13313864 -38199720 - AluYa5 SINE Alu -2 309 1 40162 69 3 3 chrY 13313864 13317473 -38196111 - L1PA4 LINE L1 -2537 3933 318 3774 142 16 1 chrY 13317493 13318168 -38195416 - L1PA7 LINE L1 -844 5617 4933 * 10814 125 24 11 chrY 13318160 13319973 -38193611 - L1PA7 LINE L1 -1796 4665 2830 422 191 0 0 chrY 13320036 13320104 -38193480 + AluSp SINE Alu 13 80 -232 992 104 0 0 chrY 13370107 13370241 -38143343 + AluSg/x SINE Alu 156 289 -23 5304 149 28 80 chrY 13370245 13371410 -38142174 - L1PA7 LINE L1 -4633 1828 732 665 219 0 8 chrY 13371512 13371640 -38141944 + MER50 LTR ERV1 608 734 0 2537 247 84 1 chrY 13371798 13372596 -38140988 - L1MB5 LINE L1 0 6174 5311 927 217 169 35 chrY 13372980 13373348 -38140236 + L1M4 LINE L1 4787 5203 -943 538 157 168 0 chrY 13373352 13373480 -38140104 + L1MC3 LINE L1 6093 6219 -1566 388 253 113 41 chrY 13373505 13373699 -38139885 - L1MC/D LINE L1 -2037 5771 5564 987 192 103 0 chrY 13374000 13374214 -38139370 - LTR9B LTR ERV1 0 644 409 1148 177 9 28 chrY 13374314 13374529 -38139055 + AluSp SINE Alu 75 285 -28 225 94 0 0 chrY 13374529 13374561 -38139023 + (TA)n Simple_repeat Simple_repeat 2 33 0 205 229 0 48 chrY 13374563 13374646 -38138938 + (TCTCTG)n Simple_repeat Simple_repeat 3 81 0 594 286 123 17 chrY 13374675 13375025 -38138559 - L1MDa LINE L1 -3296 3244 2858 235 290 104 42 chrY 13375190 13375449 -38138135 - L1MDa LINE L1 -4814 1726 1452 2208 96 7 0 chrY 13375470 13375772 -38137812 + AluY SINE Alu 2 305 -6 36 0 0 0 chrY 13375922 13375958 -38137626 + AT_rich Low_complexity Low_complexity 1 36 0 420 243 17 28 chrY 13377202 13377383 -38136201 + (TA)n Simple_repeat Simple_repeat 2 180 0 1315 151 4 110 chrY 13377387 13377568 -38136016 - AluSx SINE Alu -9 303 159 283 78 39 0 chrY 13377568 13377619 -38135965 + (TA)n Simple_repeat Simple_repeat 2 54 0 1315 151 4 110 chrY 13377619 13377709 -38135875 - AluSx SINE Alu -153 159 61 207 216 27 27 chrY 13377735 13377809 -38135775 + (TA)n Simple_repeat Simple_repeat 1 74 0 290 99 28 28 chrY 13377837 13377908 -38135676 + (TA)n Simple_repeat Simple_repeat 2 72 0 1157 224 120 7 chrY 13377913 13378221 -38135363 + MER2 DNA MER2_type 2 344 -1 201 39 0 0 chrY 13378240 13378266 -38135318 + (CA)n Simple_repeat Simple_repeat 1 26 0 225 303 40 10 chrY 13379048 13379147 -38134437 - MLT1H LTR MaLR -48 501 400 242 281 0 0 chrY 13379848 13379912 -38133672 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 382 250 20 54 chrY 13379936 13380084 -38133500 - MER3 DNA MER1_type -79 130 35 1147 198 73 51 chrY 13380659 13380932 -38132652 + AluJo SINE Alu 9 287 -25 476 273 40 54 chrY 13383242 13383539 -38130045 - L1MC5 LINE L1 -582 7379 7087 292 281 24 16 chrY 13383559 13383682 -38129902 + L1MC4 LINE L1 6884 7038 -1004 225 0 0 0 chrY 13383916 13383941 -38129643 + (TA)n Simple_repeat Simple_repeat 2 26 0 1366 124 287 176 chrY 13385071 13385593 -38127991 - LTR12 LTR ERV1 0 714 2 228 207 0 146 chrY 13385641 13385663 -38127921 + MIR SINE MIR 47 71 -191 1538 193 18 7 chrY 13385663 13385974 -38127610 + AluSx SINE Alu 1 312 0 228 207 0 146 chrY 13385974 13386033 -38127551 + MIR SINE MIR 71 116 -146 1394 211 0 11 chrY 13386475 13386754 -38126830 + AluJo SINE Alu 26 301 -11 257 291 12 0 chrY 13386770 13386856 -38126728 - MLT1F1 LTR MaLR -408 159 73 659 310 25 8 chrY 13387019 13387264 -38126320 - MIR SINE MIR -2 260 12 2302 204 42 9 chrY 13387856 13388384 -38125200 + L1MB4 LINE L1 5600 6144 -36 44 56 0 0 chrY 13388417 13388489 -38125095 + AT_rich Low_complexity Low_complexity 1 72 0 435 338 14 0 chrY 13388984 13389123 -38124461 + MER5B DNA MER1_type 7 147 -31 1020 143 0 227 chrY 13389126 13389496 -38124088 + AluJb SINE Alu 1 286 -16 244 234 21 53 chrY 13390391 13390485 -38123099 + GA-rich Low_complexity Low_complexity 6 96 0 24 67 0 0 chrY 13390685 13390730 -38122854 + AT_rich Low_complexity Low_complexity 1 45 0 297 51 0 0 chrY 13390743 13390782 -38122802 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1609 215 32 9 chrY 13391727 13392067 -38121517 - MER7A DNA MER2_type 0 346 1 380 335 116 38 chrY 13392111 13392838 -38120746 + L1ME4a LINE L1 5299 6103 -18 1359 230 96 8 chrY 13392981 13393337 -38120247 - MLT2C1 LTR ERVL -2 395 9 23 0 0 0 chrY 13394117 13394140 -38119444 + AT_rich Low_complexity Low_complexity 1 23 0 30198 47 3 0 chrY 13394392 13398995 -38114589 - L1PA2 LINE L1 0 6155 1540 219 198 79 0 chrY 13399829 13399930 -38113654 + (TA)n Simple_repeat Simple_repeat 2 110 0 1433 195 59 3 chrY 13400326 13400613 -38112971 + AluSx SINE Alu 1 303 -9 1762 147 6 72 chrY 13401704 13402038 -38111546 - AluSx SINE Alu 0 312 1 532 223 13 13 chrY 13402343 13402578 -38111006 + GA-rich Low_complexity Low_complexity 1 235 0 2066 150 25 11 chrY 13402632 13402998 -38110586 + THE1C LTR MaLR 1 371 -4 1701 168 4 0 chrY 13403728 13404002 -38109582 - AluSc SINE Alu -19 290 16 245 276 142 15 chrY 13404168 13404302 -38109282 - L2 LINE L2 -4 3309 3159 23 33 0 0 chrY 13404852 13404882 -38108702 + AT_rich Low_complexity Low_complexity 1 30 0 301 299 102 27 chrY 13405197 13405384 -38108200 + HAL1 LINE L1 1450 1650 -857 358 328 8 23 chrY 13405613 13405741 -38107843 + MLT1G LTR MaLR 243 368 -222 732 272 47 43 chrY 13405777 13406009 -38107575 + MLT1G LTR MaLR 357 589 -1 16402 38 3 0 chrY 13406010 13408050 -38105534 + L1P LINE L1 1801 3846 -2300 1745 111 0 8 chrY 13408358 13408626 -38104958 - AluY SINE Alu 0 304 39 1353 238 77 71 chrY 13408674 13409183 -38104401 - MLT2B1 LTR ERVL -8 512 1 26 0 0 0 chrY 13409247 13409273 -38104311 + AT_rich Low_complexity Low_complexity 1 26 0 3674 123 27 2 chrY 13409484 13410047 -38103537 + LTR19B LTR ERV1 1 577 -3 1573 77 0 0 chrY 13410047 13410256 -38103328 - L1PA4 LINE L1 -2 6153 5945 1540 206 0 0 chrY 13410256 13410518 -38103066 - AluSx SINE Alu -50 262 1 655 295 43 6 chrY 13410874 13411100 -38102484 - MLT1E1 LTR MaLR -22 632 334 281 282 14 0 chrY 13411275 13411346 -38102238 - MLT1E LTR MaLR -463 130 59 23 54 0 0 chrY 13411855 13411892 -38101692 + AT_rich Low_complexity Low_complexity 1 37 0 2175 157 8 3 chrY 13412834 13413191 -38100393 + THE1B LTR MaLR 1 359 -5 4066 144 32 4 chrY 13413743 13414467 -38099117 - L1MA4A LINE L1 -5 6298 5555 188 303 0 40 chrY 13414725 13414801 -38098783 + L3 LINE CR1 402 474 -1103 24 67 0 0 chrY 13415057 13415102 -38098482 + AT_rich Low_complexity Low_complexity 1 45 0 893 164 0 0 chrY 13415103 13415249 -38098335 - L1PB3 LINE L1 -5 6149 6004 3284 173 10 11 chrY 13415496 13416103 -38097481 - L1PA15 LINE L1 0 6165 5560 373 241 30 84 chrY 13416486 13416689 -38096895 + L1M4 LINE L1 3199 3390 -2756 1574 194 0 58 chrY 13416689 13416998 -38096586 + MER1A DNA MER1_type 1 291 -238 300 258 8 25 chrY 13417020 13417140 -38096444 + (TA)n Simple_repeat Simple_repeat 1 118 0 215 250 0 24 chrY 13417198 13417282 -38096302 + (TA)n Simple_repeat Simple_repeat 2 83 0 994 285 62 0 chrY 13417353 13417676 -38095908 + MER2 DNA MER2_type 2 344 0 1545 194 3 48 chrY 13417678 13417993 -38095591 - AluSx SINE Alu -11 301 1 257 75 25 0 chrY 13418031 13418071 -38095513 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 1125 247 85 16 chrY 13418071 13418435 -38095149 - MLT2B1 LTR ERVL -62 458 70 421 281 75 75 chrY 13418445 13418714 -38094870 - MLT1D LTR MaLR -198 269 1 1634 185 3 7 chrY 13419010 13419307 -38094277 - AluSx SINE Alu -14 298 3 606 207 0 0 chrY 13419309 13419425 -38094159 - AluJo SINE Alu -8 304 189 933 173 0 101 chrY 13419446 13419683 -38093901 - AluJo SINE Alu -99 213 1 298 296 0 0 chrY 13420667 13420755 -38092829 + MER58 DNA MER1_type 173 260 -2160 230 71 0 24 chrY 13420895 13420937 -38092647 + (TTTTTG)n Simple_repeat Simple_repeat 6 46 0 249 33 0 0 chrY 13421214 13421244 -38092340 + (T)n Simple_repeat Simple_repeat 1 30 0 1835 188 18 9 chrY 13421284 13421624 -38091960 + MER61A LTR ERV1 1 343 0 200 35 35 0 chrY 13422160 13422189 -38091395 + (TG)n Simple_repeat Simple_repeat 1 30 0 26 0 0 0 chrY 13422506 13422532 -38091052 + AT_rich Low_complexity Low_complexity 1 26 0 605 307 29 4 chrY 13422826 13423048 -38090536 - MIR SINE MIR -2 260 34 21 0 0 0 chrY 13424990 13425011 -38088573 + AT_rich Low_complexity Low_complexity 1 21 0 539 59 247 0 chrY 13425424 13425509 -38088075 - L1P LINE L1 -2021 4125 4020 516 72 0 0 chrY 13425996 13426065 -38087519 + (TA)n Simple_repeat Simple_repeat 2 70 0 472 238 98 69 chrY 13426084 13426411 -38087173 + MLT1B LTR MaLR 52 390 0 577 107 0 0 chrY 13426820 13426895 -38086689 + LTR22B LTR ERVK 418 492 0 584 101 56 22 chrY 13426895 13426984 -38086600 + THE1B LTR MaLR 8 99 -265 1443 131 0 0 chrY 13426988 13427210 -38086374 - HERV9 LTR ERV1 -7759 640 419 333 281 58 16 chrY 13427365 13427486 -38086098 + MIR SINE MIR 58 183 -79 22 70 0 0 chrY 13427549 13427592 -38085992 + AT_rich Low_complexity Low_complexity 1 43 0 2001 62 0 8 chrY 13427800 13428093 -38085491 + L1PA3 LINE L1 5884 6174 0 1300 227 22 7 chrY 13428434 13428703 -38084881 - AluJo SINE Alu -30 282 10 711 256 6 0 chrY 13429235 13429395 -38084189 - AluJo SINE Alu -2 300 140 667 189 68 20 chrY 13429433 13429581 -38084003 - AluJo SINE Alu -153 159 5 13127 52 1 1 chrY 13429735 13432163 -38081421 - L1PA3 LINE L1 -1 6154 3728 21937 65 26 0 chrY 13432163 13435114 -38078470 + L1PA3 LINE L1 727 3753 -2393 246 320 16 24 chrY 13435143 13435268 -38078316 - MLT1E2 LTR MaLR -496 130 7 1096 245 14 25 chrY 13435480 13435762 -38077822 + AluJo SINE Alu 1 279 -33 39308 66 2 8 chrY 13435765 13441969 -38071615 + L1PA3 LINE L1 3 6102 -29 258 71 18 36 chrY 13441976 13442032 -38071552 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 1018 70 0 0 chrY 13442032 13442161 -38071423 + L1PA3 LINE L1 6024 6152 -3 825 158 17 6 chrY 13442209 13442386 -38071198 + GA-rich Low_complexity Low_complexity 1 179 0 762 173 6 11 chrY 13442413 13442592 -38070992 + GA-rich Low_complexity Low_complexity 3 180 0 475 141 0 24 chrY 13442592 13442677 -38070907 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 1420 196 34 45 chrY 13443115 13443473 -38070111 + MLT1A1 LTR MaLR 12 365 0 1951 159 7 3 chrY 13443623 13443932 -38069652 - AluSx SINE Alu -2 310 1 812 118 72 26 chrY 13444111 13444264 -38069320 + L1MA1 LINE L1 5448 5607 -695 1856 132 30 10 chrY 13444273 13444771 -38068813 + L1MA1 LINE L1 5721 6302 0 21 0 0 0 chrY 13444771 13444792 -38068792 + AT_rich Low_complexity Low_complexity 1 21 0 548 232 38 26 chrY 13445082 13445268 -38068316 - L1MB5 LINE L1 -10 6164 5980 198 103 0 0 chrY 13445269 13445298 -38068286 + (TG)n Simple_repeat Simple_repeat 2 30 0 2091 180 20 48 chrY 13445415 13445771 -38067813 - L1MA7 LINE L1 -1 6290 5951 2818 3 0 0 chrY 13445771 13446072 -38067512 - AluYa5 SINE Alu 0 311 11 2091 180 20 48 chrY 13446072 13446220 -38067364 - L1MA7 LINE L1 -340 5951 5800 488 118 32 21 chrY 13446219 13446312 -38067272 + L1MA7 LINE L1 5706 5799 -504 * 26 50 0 0 chrY 13446320 13446360 -38067224 + AT_rich Low_complexity Low_complexity 1 40 0 661 251 92 38 chrY 13446611 13446961 -38066623 + MLT1C LTR MaLR 14 391 -76 191 271 0 86 chrY 13449256 13449326 -38064258 + MIR SINE MIR 129 192 -70 766 120 0 63 chrY 13449701 13449843 -38063741 - L1PA8 LINE L1 -138 6034 5902 * 923 67 75 0 chrY 13449820 13449954 -38063630 + L1PA8 LINE L1 6029 6172 0 23 0 0 0 chrY 13451093 13451116 -38062468 + AT_rich Low_complexity Low_complexity 1 23 0 840 37 0 0 chrY 13452349 13452457 -38061127 + (TA)n Simple_repeat Simple_repeat 1 108 0 28 0 0 0 chrY 13453233 13453261 -38060323 + AT_rich Low_complexity Low_complexity 1 28 0 772 39 19 0 chrY 13454063 13454167 -38059417 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 14428 54 5 14 chrY 13454167 13456827 -38056757 - L1PA4 LINE L1 -11 6144 3501 2044 160 0 0 chrY 13456841 13457148 -38056436 - AluSx SINE Alu 0 312 6 1171 220 27 36 chrY 13457154 13457491 -38056093 - THE1C LTR MaLR -41 334 1 27 0 0 0 chrY 13457665 13457692 -38055892 + AT_rich Low_complexity Low_complexity 1 27 0 380 217 46 33 chrY 13457692 13457732 -38055852 - L1MA4 LINE L1 0 6300 6262 396 0 0 0 chrY 13457732 13457776 -38055808 + (TA)n Simple_repeat Simple_repeat 2 45 0 380 217 46 33 chrY 13457776 13457887 -38055697 - L1MA4 LINE L1 -38 6262 6147 319 291 0 15 chrY 13457946 13458077 -38055507 + L1MC4 LINE L1 6614 6703 -1339 339 171 0 0 chrY 13458082 13458158 -38055426 + (TA)n Simple_repeat Simple_repeat 1 76 0 195 42 0 0 chrY 13458177 13458201 -38055383 + (GA)n Simple_repeat Simple_repeat 2 25 0 2512 122 13 0 chrY 13458201 13458585 -38054999 - MLT2A1 LTR ERVL -52 392 1 34249 122 24 29 chrY 13458585 13464270 -38049314 - HERVL-A1 LTR ERVL 0 5654 1 248 140 0 35 chrY 13464270 13464327 -38049257 - MLT2A1 LTR ERVL 0 444 390 320 264 8 0 chrY 13464390 13464515 -38049069 + (TA)n Simple_repeat Simple_repeat 1 126 0 2474 129 5 0 chrY 13464572 13464951 -38048633 - MLT2A1 LTR ERVL -63 381 1 1857 216 131 9 chrY 13464957 13465490 -38048094 - L1MA3 LINE L1 -163 6142 5545 838 222 35 117 chrY 13465870 13466212 -38047372 - MLT1C LTR MaLR -7 460 147 1768 162 43 118 chrY 13466212 13466719 -38046865 + LTR12 LTR ERV1 6 474 -240 19203 150 12 15 chrY 13466745 13466861 -38046723 + HERV9 LTR ERV1 54 169 -8230 2297 105 0 0 chrY 13466861 13467156 -38046428 + AluY SINE Alu 2 296 -15 19203 150 12 15 chrY 13467156 13471315 -38042269 + HERV9 LTR ERV1 169 4394 -4005 * 22904 129 10 16 chrY 13471313 13475184 -38038400 + HERV9 LTR ERV1 4551 8399 0 720 153 324 5 chrY 13475184 13475400 -38038184 + LTR12 LTR ERV1 1 285 -429 301 194 15 0 chrY 13475401 13475468 -38038116 + LTR30 LTR ERV1 553 620 -102 643 174 25 0 chrY 13475468 13475589 -38037995 + LTR12 LTR ERV1 355 478 -236 567 264 0 25 chrY 13475592 13475751 -38037833 - MLT1C LTR MaLR -312 155 1 40 21 0 0 chrY 13475950 13475997 -38037587 + AT_rich Low_complexity Low_complexity 1 47 0 1386 222 0 11 chrY 13476119 13476394 -38037190 - AluJo SINE Alu -28 284 13 394 273 0 0 chrY 13476587 13476697 -38036887 + L1MA9 LINE L1 6170 6279 -33 198 250 0 0 chrY 13477046 13477090 -38036494 + MIR SINE MIR 219 262 0 21 0 0 0 chrY 13477248 13477269 -38036315 + AT_rich Low_complexity Low_complexity 1 21 0 189 74 0 0 chrY 13477289 13477316 -38036268 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 24 0 0 0 chrY 13477550 13477574 -38036010 + AT_rich Low_complexity Low_complexity 1 24 0 879 219 0 6 chrY 13477583 13477743 -38035841 + FRAM SINE Alu 1 157 -19 228 217 33 0 chrY 13478162 13478254 -38035330 + GA-rich Low_complexity Low_complexity 2 96 0 255 125 0 0 chrY 13479113 13479153 -38034431 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 1726 170 62 0 chrY 13479596 13479984 -38033600 - L1MB3 LINE L1 -2 6181 5770 450 0 0 0 chrY 13480221 13480271 -38033313 + (CA)n Simple_repeat Simple_repeat 2 51 0 388 293 166 51 chrY 13480272 13480760 -38032824 - L1M4 LINE L1 -1559 4587 4044 509 263 0 0 chrY 13480999 13481113 -38032471 + FLAM_C SINE Alu 5 118 -25 1294 192 54 4 chrY 13481331 13481592 -38031992 - AluSx SINE Alu -6 306 33 26 0 0 0 chrY 13481594 13481620 -38031964 + AT_rich Low_complexity Low_complexity 1 26 0 327 316 35 29 chrY 13481792 13481963 -38031621 - L1M4 LINE L1 -1868 4278 4107 26 0 0 0 chrY 13482250 13482276 -38031308 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chrY 13484620 13484640 -38028944 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 432 212 17 8 chrY 13484808 13485050 -38028534 + GA-rich Low_complexity Low_complexity 1 244 0 342 0 0 0 chrY 13485815 13485853 -38027731 + (CA)n Simple_repeat Simple_repeat 2 39 0 28 61 0 0 chrY 13486030 13486079 -38027505 + AT_rich Low_complexity Low_complexity 1 49 0 1332 198 4 24 chrY 13486132 13486379 -38027205 - AluJo SINE Alu -32 280 39 200 324 21 78 chrY 13487071 13487213 -38026371 + MIR SINE MIR 52 185 -77 1410 209 4 18 chrY 13488536 13488814 -38024770 - AluJb SINE Alu -4 308 35 2095 143 0 0 chrY 13489516 13489817 -38023767 - AluSg1 SINE Alu -5 304 4 1250 192 61 34 chrY 13491020 13491270 -38022314 - L1MB3 LINE L1 0 6183 5922 2017 205 29 92 chrY 13491270 13491923 -38021661 + LTR9 LTR ERV1 1 612 0 1250 192 61 34 chrY 13491923 13492027 -38021557 - L1MB3 LINE L1 -261 5922 5822 349 182 0 45 chrY 13492008 13492096 -38021488 - L1MB3 LINE L1 -304 5879 5796 * 1821 173 12 9 chrY 13492451 13492797 -38020787 + MLT1B LTR MaLR 4 350 -40 1135 184 24 0 chrY 13492805 13493012 -38020572 + MLT1B LTR MaLR 179 390 0 25 51 0 0 chrY 13493019 13493058 -38020526 + AT_rich Low_complexity Low_complexity 1 39 0 16953 71 8 1 chrY 13493376 13496450 -38017134 - L1PA5 LINE L1 -7 6147 3054 16723 86 1 0 chrY 13496450 13498737 -38014847 + L1PA5 LINE L1 768 3056 -3090 549 305 5 43 chrY 13498969 13499156 -38014428 + MIR SINE MIR 36 215 -47 655 165 0 0 chrY 13499165 13499280 -38014304 + L1PB3 LINE L1 6033 6147 -7 33 56 0 0 chrY 13499280 13499334 -38014250 + AT_rich Low_complexity Low_complexity 1 54 0 325 262 27 96 chrY 13499554 13499665 -38013919 + L1M4 LINE L1 3521 3615 -2531 1386 214 34 7 chrY 13499665 13499960 -38013624 - AluJo SINE Alu -5 307 5 325 262 27 96 chrY 13499960 13500035 -38013549 + L1M4 LINE L1 3615 3694 -2452 956 206 34 129 chrY 13500047 13500372 -38013212 + AluSx SINE Alu 2 295 -7 234 229 0 0 chrY 13500408 13500469 -38013115 + L1M4 LINE L1 3693 3753 -2393 27 0 0 0 chrY 13501096 13501123 -38012461 + AT_rich Low_complexity Low_complexity 1 27 0 1904 154 17 0 chrY 13501530 13501828 -38011756 - AluSx SINE Alu -9 303 1 224 222 0 0 chrY 13502535 13502580 -38011004 + GA-rich Low_complexity Low_complexity 1 45 0 2483 162 80 0 chrY 13502987 13503450 -38010134 - LTR26 LTR ERV1 0 603 104 1528 200 3 17 chrY 13504881 13505176 -38008408 - AluJo SINE Alu -21 291 1 2128 255 17 24 chrY 13505270 13505804 -38007780 - MER74A LTR ERVL 0 558 29 410 330 86 39 chrY 13506212 13506748 -38006836 + ERVL LTR ERVL 4578 5138 -626 799 151 20 7 chrY 13506768 13506914 -38006670 + MSTA-int LTR MaLR 1498 1645 -6 1888 170 78 8 chrY 13506919 13507319 -38006265 + MSTA LTR MaLR 1 428 0 219 88 0 0 chrY 13507581 13507615 -38005969 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1456 145 168 4 chrY 13508056 13508318 -38005266 - AluSx SINE Alu -7 305 1 847 241 21 113 chrY 13510249 13510364 -38003220 + MLT1C LTR MaLR 79 203 -264 4029 163 14 10 chrY 13510364 13511052 -38002532 + LTR8 LTR ERV1 1 691 0 847 241 21 113 chrY 13511052 13511318 -38002266 + MLT1C LTR MaLR 203 425 -42 1782 180 3 0 chrY 13511640 13511935 -38001649 - AluSx SINE Alu -11 301 6 338 106 0 61 chrY 13512793 13512859 -38000725 + Alu SINE Alu 241 302 0 976 178 69 5 chrY 13512869 13513071 -38000513 + MER46A DNA MER2_type 21 235 -1 354 61 0 0 chrY 13513072 13513121 -38000463 + (TG)n Simple_repeat Simple_repeat 2 50 0 3111 136 32 2 chrY 13513136 13513599 -37999985 - MER1A DNA MER1_type 0 529 53 1605 122 4 39 chrY 13513628 13513883 -37999701 - AluY SINE Alu -65 246 1 2069 232 21 23 chrY 13513919 13514437 -37999147 - MER74A LTR ERVL -38 520 4 25 51 0 0 chrY 13514545 13514584 -37999000 + AT_rich Low_complexity Low_complexity 1 39 0 340 275 12 0 chrY 13514939 13515019 -37998565 + MER58A DNA MER1_type 9 89 -18 2900 3 0 0 chrY 13515026 13515337 -37998247 - AluYa5 SINE Alu 0 311 1 343 280 167 0 chrY 13516096 13516228 -37997356 - MER5A DNA MER1_type -1 188 35 674 254 42 0 chrY 13516245 13516438 -37997146 - MER3 DNA MER1_type 0 209 9 1437 210 4 7 chrY 13517405 13517716 -37995868 + AluJo SINE Alu 9 318 0 1576 212 10 0 chrY 13518132 13518302 -37995282 - AluJb SINE Alu -12 300 124 225 0 0 0 chrY 13518302 13518327 -37995257 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1576 212 10 0 chrY 13518327 13518453 -37995131 - AluJb SINE Alu -188 124 1 1053 60 16 38 chrY 13518524 13518707 -37994877 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chrY 13519068 13519089 -37994495 + AT_rich Low_complexity Low_complexity 1 21 0 2398 148 0 6 chrY 13520900 13521265 -37992319 + THE1B LTR MaLR 1 363 -1 4076 135 30 18 chrY 13522042 13522754 -37990830 - L1PA16 LINE L1 -1 6165 5446 25 51 0 0 chrY 13523893 13523932 -37989652 + AT_rich Low_complexity Low_complexity 1 39 0 243 272 57 63 chrY 13524069 13524227 -37989357 - L1MA10 LINE L1 -7 6327 6171 505 218 24 87 chrY 13524251 13524457 -37989127 - L1ME1 LINE L1 -177 6058 5866 10137 54 11 1 chrY 13524457 13526530 -37987054 - L1PA4 LINE L1 0 6155 4069 4748 50 2 0 chrY 13526533 13527132 -37986452 + L1PA4 LINE L1 3450 4049 -2097 1067 268 92 43 chrY 13527130 13527894 -37985690 - L1ME1 LINE L1 -1053 5162 4362 * 853 274 5 80 chrY 13527978 13528351 -37985233 - L1ME1 LINE L1 -5602 794 450 2164 142 25 35 chrY 13528381 13528446 -37985138 + THE1B LTR MaLR 3 67 -297 2057 56 22 0 chrY 13528446 13528714 -37984870 + L1PA4 LINE L1 5882 6155 0 2164 142 25 35 chrY 13528714 13529014 -37984570 + THE1B LTR MaLR 67 364 0 667 310 91 29 chrY 13529015 13529431 -37984153 - L1ME1 LINE L1 -5915 481 40 1866 158 0 0 chrY 13529444 13529747 -37983837 - AluSc SINE Alu -6 303 1 3229 199 15 13 chrY 13529758 13530098 -37983486 - L1MD1 LINE L1 -10 6232 5894 2082 62 0 4 chrY 13530098 13530354 -37983230 - AluY SINE Alu -4 307 53 3229 199 15 13 chrY 13530354 13530700 -37982884 - L1MD1 LINE L1 -348 5894 5545 40421 61 23 3 chrY 13530730 13536754 -37976830 - L1PA5 LINE L1 0 6154 9 23 0 0 0 chrY 13536763 13536786 -37976798 + AT_rich Low_complexity Low_complexity 1 23 0 2210 181 40 0 chrY 13537692 13538117 -37975467 - L1PB4 LINE L1 -7 6149 5708 1600 194 30 0 chrY 13538861 13539129 -37974455 + AluSg SINE Alu 3 278 -32 326 23 23 0 chrY 13539134 13539177 -37974407 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 28 48 0 0 chrY 13540458 13540500 -37973084 + AT_rich Low_complexity Low_complexity 1 42 0 2152 121 0 3 chrY 13540770 13541060 -37972524 + AluSg SINE Alu 3 291 -19 2440 59 0 28 chrY 13541285 13541605 -37971979 - AluY SINE Alu 0 311 1 704 207 7 0 chrY 13541605 13541740 -37971844 - FLAM_C SINE Alu -7 136 1 1141 254 3 45 chrY 13542117 13542428 -37971156 + AluJb SINE Alu 1 298 -4 21 0 0 0 chrY 13545681 13545702 -37967882 + AT_rich Low_complexity Low_complexity 1 21 0 11378 133 18 3 chrY 13546121 13548734 -37964850 - L1PA7 LINE L1 -4 6150 3504 3503 210 4 60 chrY 13549339 13549698 -37963886 - LTR39 LTR ERV1 -13 770 392 1502 207 4 0 chrY 13549698 13549968 -37963616 + AluSx SINE Alu 3 273 -39 3503 210 4 60 chrY 13549968 13550260 -37963324 - LTR39 LTR ERV1 -391 392 172 1899 226 171 45 chrY 13550260 13550993 -37962591 - LTR1B LTR ERV1 -1 825 1 3503 210 4 60 chrY 13550993 13551156 -37962428 - LTR39 LTR ERV1 -611 172 1 414 0 0 0 chrY 13551283 13551329 -37962255 + (CA)n Simple_repeat Simple_repeat 2 47 0 3314 115 48 24 chrY 13551338 13551877 -37961707 + MER41A LTR ERV1 3 554 0 1807 178 50 3 chrY 13552108 13552429 -37961155 + L1P3 LINE L1 9 344 -6117 5861 108 25 2 chrY 13552434 13553656 -37959928 + L1PA8 LINE L1 4919 6163 -9 3200 121 4 8 chrY 13553918 13554413 -37959171 - L1PA8 LINE L1 -16 6156 5664 2081 171 26 5 chrY 13554413 13554825 -37958759 + L1P LINE L1 4636 5059 -1087 690 249 17 0 chrY 13554827 13555004 -37958580 - MER4D LTR ERV1 -38 865 686 28 0 0 0 chrY 13556229 13556257 -37957327 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 13556484 13556505 -37957079 + AT_rich Low_complexity Low_complexity 1 21 0 1140 272 52 60 chrY 13557551 13558054 -37955530 + MLT1D LTR MaLR 7 505 0 201 367 142 13 chrY 13558054 13558280 -37955304 - L2 LINE L2 -1845 1469 1215 1910 164 3 0 chrY 13558414 13558724 -37954860 + AluSq SINE Alu 1 311 -2 183 80 0 0 chrY 13560485 13560510 -37953074 + (A)n Simple_repeat Simple_repeat 1 25 0 221 312 65 48 chrY 13560549 13560735 -37952849 + L3 LINE CR1 588 776 -801 1665 163 16 23 chrY 13562242 13562548 -37951036 - AluSx SINE Alu -8 304 1 1663 115 56 4 chrY 13562746 13562998 -37950586 + AluY SINE Alu 37 301 -10 1708 167 7 20 chrY 13563635 13563935 -37949649 + AluSq SINE Alu 1 296 -17 218 214 0 14 chrY 13564030 13564100 -37949484 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 252 0 0 0 chrY 13564100 13564128 -37949456 + (CA)n Simple_repeat Simple_repeat 2 29 0 1332 159 91 4 chrY 13564129 13564393 -37949191 - L1PA15 LINE L1 -164 6001 5715 275 229 22 26 chrY 13564397 13564632 -37948952 + (TA)n Simple_repeat Simple_repeat 1 234 0 343 189 40 0 chrY 13564695 13564769 -37948815 + L1P4 LINE L1 5715 5791 -370 239 250 0 12 chrY 13564771 13564851 -37948733 + (TA)n Simple_repeat Simple_repeat 1 79 0 249 159 0 0 chrY 13564879 13564923 -37948661 + (CA)n Simple_repeat Simple_repeat 2 45 0 4468 157 26 42 chrY 13565303 13566318 -37947266 - L1PA15 LINE L1 -1 6164 5163 194 61 0 30 chrY 13566910 13566943 -37946641 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 918 226 28 74 chrY 13566953 13567236 -37946348 - AluJo SINE Alu -31 281 12 397 200 0 12 chrY 13567287 13567367 -37946217 + MER76 LTR ERV 1 79 -609 1265 189 73 40 chrY 13567367 13567669 -37945915 + AluSx SINE Alu 1 312 0 630 130 16 8 chrY 13567669 13567792 -37945792 + GA-rich Low_complexity Low_complexity 4 127 0 1366 12 24 0 chrY 13567802 13567972 -37945612 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 1436 259 27 43 chrY 13567992 13568207 -37945377 + MER76 LTR ERV 93 299 -389 1614 166 63 30 chrY 13568207 13568569 -37945015 + THE1C LTR MaLR 1 374 -1 1436 259 27 43 chrY 13568569 13568794 -37944790 + MER76 LTR ERV 299 526 -162 597 231 0 0 chrY 13568796 13568913 -37944671 - FLAM_C SINE Alu -26 117 1 339 25 0 0 chrY 13569588 13569628 -37943956 + (GA)n Simple_repeat Simple_repeat 1 40 0 408 234 71 35 chrY 13570251 13570448 -37943136 - LTR15 LTR ERV1 -6 487 284 6274 14 7 0 chrY 13570676 13571393 -37942191 - L1PA2 LINE L1 -4 6151 5430 234 269 23 103 chrY 13571415 13571590 -37941994 - LTR15 LTR ERV1 -225 268 108 3613 314 21 45 chrY 13571701 13572888 -37940696 - HERV15 LTR ERV1 -2 8733 7604 2253 92 0 10 chrY 13572888 13573192 -37940392 - AluY SINE Alu -10 301 1 3613 314 21 45 chrY 13573192 13573851 -37939733 - HERV15 LTR ERV1 -1131 7604 6931 3137 248 18 25 chrY 13573856 13574451 -37939133 - HERV15 LTR ERV1 -2268 6359 5784 2785 16 0 0 chrY 13574451 13574760 -37938824 - AluYa8 SINE Alu -1 309 1 3137 248 18 25 chrY 13574760 13574987 -37938597 - HERV15 LTR ERV1 -2843 5784 5557 578 180 20 20 chrY 13575125 13575275 -37938309 + L1MA10 LINE L1 6184 6333 -1 1715 177 18 0 chrY 13575288 13575570 -37938014 + AluSc SINE Alu 1 287 -22 371 124 10 93 chrY 13575586 13575683 -37937901 + L1PA6 LINE L1 6061 6149 -5 2463 169 5 87 chrY 13576355 13576929 -37936655 - LTR26B LTR ERV1 -4 527 1 206 233 0 0 chrY 13577065 13577108 -37936476 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 22 70 0 0 chrY 13577440 13577483 -37936101 + AT_rich Low_complexity Low_complexity 1 43 0 1517 192 0 0 chrY 13577483 13577738 -37935846 - AluSx SINE Alu -36 276 22 1232 239 25 0 chrY 13577740 13578024 -37935560 - AluJb SINE Alu -21 291 1 310 320 10 0 chrY 13578033 13578136 -37935448 - MER106B DNA MER1_type -51 1008 905 1502 202 11 14 chrY 13578358 13578645 -37934939 + AluJo SINE Alu 4 289 -23 281 248 0 28 chrY 13579475 13579584 -37934000 + CT-rich Low_complexity Low_complexity 1 106 0 561 244 5 7 chrY 13579596 13580044 -37933540 + CT-rich Low_complexity Low_complexity 1 447 0 246 299 67 57 chrY 13580070 13580581 -37933003 - L1MEc LINE L1 -3627 2588 2119 1493 164 67 55 chrY 13580733 13581017 -37932567 - Tigger3(Golem) DNA MER2_type -338 2690 2398 1400 209 3 47 chrY 13581017 13581337 -37932247 - AluJo SINE Alu -6 306 1 1493 164 67 55 chrY 13581337 13581454 -37932130 - Tigger3(Golem) DNA MER2_type -630 2398 2284 27 29 0 0 chrY 13581582 13581616 -37931968 + AT_rich Low_complexity Low_complexity 1 34 0 710 185 0 8 chrY 13581719 13581849 -37931735 - L1MC/D LINE L1 -781 5578 5450 1573 145 91 23 chrY 13581852 13582230 -37931354 - LTR7 LTR ERV1 0 450 1 2524 114 10 12 chrY 13582230 13582635 -37930949 - HERVH LTR ERV1 0 7713 7310 6273 146 12 6 chrY 13582636 13583688 -37929896 - HERVH LTR ERV1 -820 6893 5835 6960 214 42 48 chrY 13583695 13586633 -37926951 - HERVH LTR ERV1 -3711 2898 1 1444 188 90 14 chrY 13586633 13587008 -37926576 - LTR7 LTR ERV1 0 450 1 905 218 112 56 chrY 13587055 13587340 -37926244 - AluJb SINE Alu 0 302 2 725 244 37 43 chrY 13587345 13587782 -37925802 - L1MC/D LINE L1 -746 5400 4997 2084 233 43 35 chrY 13587794 13588441 -37925143 - L1PB4 LINE L1 -1 6155 5504 200 108 0 27 chrY 13588441 13588478 -37925106 + (TTC)n Simple_repeat Simple_repeat 1 36 0 1793 177 6 19 chrY 13588478 13588795 -37924789 - AluSq SINE Alu 0 313 1 333 251 6 86 chrY 13588920 13589083 -37924501 - L1MDa LINE L1 -4936 1604 1455 16150 64 3 0 chrY 13589177 13592044 -37921540 - L1PA4 LINE L1 -7 6148 3237 7490 170 33 105 chrY 13592044 13594077 -37919507 - L1PA4 LINE L1 -4249 1897 11 1124 227 47 32 chrY 13594497 13594801 -37918783 - AluJo SINE Alu 0 308 1 4663 183 55 35 chrY 13594930 13595918 -37917666 - LTR13 LTR ERVK 0 1007 1 22 0 0 0 chrY 13596196 13596218 -37917366 + AT_rich Low_complexity Low_complexity 1 22 0 220 114 51 51 chrY 13596291 13596370 -37917214 + (TA)n Simple_repeat Simple_repeat 2 80 0 * 243 117 67 0 chrY 13596313 13596373 -37917211 + (TTATA)n Simple_repeat Simple_repeat 2 65 0 296 293 28 0 chrY 13596504 13596610 -37916974 + HAL1b LINE L1 427 535 -813 330 199 21 14 chrY 13596726 13596820 -37916764 + L1MDb LINE L1 1098 1189 -5217 15986 70 2 1 chrY 13596821 13598917 -37914667 + L1P LINE L1 697 2794 -3352 12715 112 35 3 chrY 13598914 13602811 -37910773 + L1PA6 LINE L1 2017 6151 -3 * 21 36 0 0 chrY 13603063 13603091 -37910493 + AT_rich Low_complexity Low_complexity 1 28 0 198 253 74 95 chrY 13603245 13603340 -37910244 + MIR SINE MIR 20 112 -150 1265 208 55 10 chrY 13603379 13603672 -37909912 + MLT1B LTR MaLR 1 306 -84 213 167 42 0 chrY 13603713 13603761 -37909823 + T-rich Low_complexity Low_complexity 2 51 0 694 35 0 0 chrY 13603770 13603857 -37909727 - L1PA4 LINE L1 -8 6147 6061 1050 189 25 0 chrY 13604518 13604719 -37908865 - MER2 DNA MER2_type -139 206 1 23 54 0 0 chrY 13604935 13604972 -37908612 + AT_rich Low_complexity Low_complexity 1 37 0 378 227 367 0 chrY 13604973 13605101 -37908483 - AluJb SINE Alu -15 287 113 23 0 0 0 chrY 13606634 13606657 -37906927 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chrY 13606741 13606772 -37906812 + AT_rich Low_complexity Low_complexity 1 31 0 370 230 12 12 chrY 13608245 13608356 -37905228 + L1MD2 LINE L1 5764 5839 -325 1089 225 62 17 chrY 13608608 13608914 -37904670 + Tigger7 DNA MER2_type 6 2491 0 931 264 12 25 chrY 13609139 13609381 -37904203 + AluJb SINE Alu 1 239 -73 209 106 0 64 chrY 13609576 13609623 -37903961 + (TAAAA)n Simple_repeat Simple_repeat 3 46 0 339 44 0 0 chrY 13610420 13610465 -37903119 + (TA)n Simple_repeat Simple_repeat 2 46 0 1796 207 16 8 chrY 13610466 13610847 -37902737 - MLT1B LTR MaLR -6 384 1 363 252 224 27 chrY 13611095 13611242 -37902342 - MER5A DNA MER1_type -1 188 13 255 266 90 0 chrY 13611383 13611493 -37902091 + MIR SINE MIR 40 159 -49 1363 201 46 21 chrY 13611506 13611790 -37901794 + AluJo SINE Alu 1 291 -21 1514 239 11 17 chrY 13612233 13612589 -37900995 + MER47A DNA MER2_type 12 365 -1 1433 226 31 31 chrY 13612748 13613043 -37900541 + L1MD1 LINE L1 5764 6061 -181 1894 170 138 0 chrY 13613043 13613419 -37900165 + MSTA LTR MaLR 1 428 0 1433 226 31 31 chrY 13613419 13613512 -37900072 + L1MD1 LINE L1 6060 6152 -90 31 82 0 0 chrY 13613530 13613603 -37899981 + AT_rich Low_complexity Low_complexity 1 73 0 996 163 76 0 chrY 13614091 13614108 -37899476 + AluJb SINE Alu 101 115 -197 333 0 0 0 chrY 13614108 13614145 -37899439 + (CA)n Simple_repeat Simple_repeat 2 38 0 996 163 76 0 chrY 13614145 13614299 -37899285 + AluJb SINE Alu 115 285 -27 27389 145 20 48 chrY 13614481 13616376 -37897208 + L1PA7 LINE L1 89 2036 -4118 2034 144 7 0 chrY 13616376 13616681 -37896903 + AluSx SINE Alu 1 307 -5 27389 145 20 48 chrY 13616681 13616712 -37896872 + L1PA7 LINE L1 2036 2066 -4088 3510 60 0 0 chrY 13616712 13617160 -37896424 - L1PA4 LINE L1 -2 6153 5706 27389 145 20 48 chrY 13617160 13620939 -37892645 + L1PA7 LINE L1 2066 5625 -529 3518 108 37 8 chrY 13620939 13621817 -37891767 + LTR13 LTR ERVK 1 1007 0 3246 122 33 2 chrY 13621817 13622332 -37891252 + L1PA7 LINE L1 5620 6150 -4 1706 203 24 11 chrY 13622332 13622707 -37890877 + L1PA16 LINE L1 5773 6157 -9 1136 224 199 6 chrY 13623129 13623486 -37890098 - MSTB LTR MaLR 0 426 1 1323 213 100 69 chrY 13623664 13623788 -37889796 + MLT1C LTR MaLR 3 122 -345 668 134 79 0 chrY 13623788 13623915 -37889669 - MER85 DNA T2_type -2 137 1 1323 213 100 69 chrY 13623915 13624241 -37889343 + MLT1C LTR MaLR 122 467 0 379 264 118 7 chrY 13624408 13624552 -37889032 - MER20 DNA MER1_type -1 218 59 829 151 13 7 chrY 13624553 13624850 -37888734 + L1MA5A LINE L1 5951 6292 -5 26 30 0 0 chrY 13624850 13624883 -37888701 + AT_rich Low_complexity Low_complexity 1 33 0 1358 196 44 22 chrY 13624966 13625241 -37888343 - AluJb SINE Alu -26 286 6 1287 208 18 0 chrY 13625465 13625744 -37887840 - L1PB4 LINE L1 -2 6154 5871 2321 140 0 21 chrY 13625783 13626155 -37887429 - THE1B LTR MaLR 0 364 1 1696 146 32 36 chrY 13626206 13626393 -37887191 - AluSg SINE Alu -3 307 120 1868 201 61 29 chrY 13626393 13626837 -37886747 - LTR22A LTR ERVK 0 458 1 1696 146 32 36 chrY 13626837 13626957 -37886627 - AluSg SINE Alu -190 120 1 1022 200 5 0 chrY 13627520 13627725 -37885859 + L1PB4 LINE L1 5949 6154 -2 23061 61 2 0 chrY 13628889 13631894 -37881690 - L1PA3 LINE L1 -2409 3737 727 12955 52 8 1 chrY 13631894 13634310 -37879274 + L1PA3 LINE L1 3728 6155 0 24 0 0 0 chrY 13634312 13634336 -37879248 + AT_rich Low_complexity Low_complexity 1 24 0 578 185 89 27 chrY 13634489 13634635 -37878949 + AluJo SINE Alu 5 159 -153 747 255 0 0 chrY 13634673 13634834 -37878750 + AluJo SINE Alu 140 300 -2 1376 219 22 4 chrY 13635363 13635633 -37877951 + AluJo SINE Alu 8 282 -30 414 0 0 0 chrY 13635973 13636019 -37877565 + (TTA)n Simple_repeat Simple_repeat 3 48 0 21438 57 2 1 chrY 13636019 13642064 -37871520 - L1PA3 LINE L1 -18 6137 1 25 0 0 0 chrY 13642574 13642599 -37870985 + AT_rich Low_complexity Low_complexity 1 25 0 1676 176 64 20 chrY 13643574 13643920 -37869664 - MLT1B LTR MaLR -29 361 1 566 197 7 0 chrY 13644616 13644753 -37868831 + (TGGA)n Simple_repeat Simple_repeat 1 138 0 1483 211 33 19 chrY 13644756 13645070 -37868514 - MLT2B2 LTR ERVL -24 496 126 1958 181 19 6 chrY 13645070 13645429 -37868155 - THE1B LTR MaLR 0 364 1 1483 211 33 19 chrY 13645429 13645557 -37868027 - MLT2B2 LTR ERVL -394 126 1 327 253 133 32 chrY 13645760 13645918 -37867666 + L1MDa LINE L1 1741 1914 -4626 833 76 8 0 chrY 13646062 13646180 -37867404 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 315 294 49 0 chrY 13646449 13646551 -37867033 - MER94 DNA DNA -2 132 26 1949 153 0 0 chrY 13646591 13646878 -37866706 + AluSg SINE Alu 3 289 -21 627 81 0 0 chrY 13646878 13646964 -37866620 + (GGGAA)n Simple_repeat Simple_repeat 4 89 0 297 0 0 0 chrY 13646965 13646998 -37866586 + (CAAAG)n Simple_repeat Simple_repeat 3 35 0 509 255 0 0 chrY 13647110 13647208 -37866376 + AluJo SINE Alu 1 98 -214 537 114 13 0 chrY 13647208 13647287 -37866297 - THE1C LTR MaLR 0 375 296 1072 67 24 18 chrY 13647287 13647451 -37866133 - L1P LINE L1 -777 5369 5205 5030 30 3 0 chrY 13647451 13648029 -37865555 + L1PA3 LINE L1 5558 6155 0 1851 126 56 3 chrY 13648042 13648344 -37865240 - THE1C LTR MaLR -57 318 1 993 190 5 15 chrY 13648346 13648541 -37865043 + AluJo SINE Alu 96 288 -24 23 0 0 0 chrY 13648548 13648571 -37865013 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chrY 13648611 13648651 -37864933 + (CA)n Simple_repeat Simple_repeat 1 40 0 910 61 8 8 chrY 13649370 13649501 -37864083 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 265 174 26 90 chrY 13650780 13650935 -37862649 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 286 351 36 12 chrY 13650959 13651127 -37862457 - MIR SINE MIR -3 259 88 189 0 0 0 chrY 13652396 13652417 -37861167 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1808 139 8 0 chrY 13652419 13652686 -37860898 - AluSc SINE Alu -40 269 1 734 139 26 21 chrY 13652799 13653233 -37860351 + (TAGA)n Simple_repeat Simple_repeat 1 436 0 27 0 0 0 chrY 13654318 13654345 -37859239 + AT_rich Low_complexity Low_complexity 1 27 0 205 235 12 24 chrY 13654554 13654639 -37858945 + (TA)n Simple_repeat Simple_repeat 1 84 0 263 276 152 0 chrY 13655171 13655316 -37858268 + Charlie2a DNA MER1_type 914 1080 -1782 23 97 0 0 chrY 13655343 13655415 -37858169 + AT_rich Low_complexity Low_complexity 1 72 0 2300 83 10 0 chrY 13655659 13655961 -37857623 - AluY SINE Alu -6 305 1 1873 151 0 22 chrY 13656080 13656399 -37857185 - AluSx SINE Alu 0 312 1 2319 104 0 0 chrY 13658383 13658690 -37854894 - AluY SINE Alu -4 307 1 2007 185 26 8 chrY 13658753 13659142 -37854442 - Tigger2 DNA MER2_type -1 2717 2322 24 0 0 0 chrY 13659688 13659712 -37853872 + AT_rich Low_complexity Low_complexity 1 24 0 375 248 14 25 chrY 13660037 13660322 -37853262 + CT-rich Low_complexity Low_complexity 1 281 0 788 260 105 30 chrY 13661406 13661555 -37852029 + LTR48B LTR ERV1 6 143 -501 1689 172 138 24 chrY 13661555 13661938 -37851646 - MSTA LTR MaLR 0 428 2 788 260 105 30 chrY 13661938 13662084 -37851500 + LTR48B LTR ERV1 143 323 -321 188 0 0 69 chrY 13662276 13662305 -37851279 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1129 171 8 50 chrY 13662305 13662583 -37851001 + LTR29 LTR ERV1 363 651 -2 21 0 0 0 chrY 13663583 13663604 -37849980 + AT_rich Low_complexity Low_complexity 1 21 0 2993 163 42 30 chrY 13663880 13664441 -37849143 - MER39B LTR ERV1 0 653 81 2467 137 0 0 chrY 13664441 13664805 -37848779 + THE1B LTR MaLR 1 364 0 2993 163 42 30 chrY 13664805 13664887 -37848697 - MER39B LTR ERV1 -572 81 2 917 183 52 44 chrY 13666691 13666920 -37846664 + L1M3 LINE L1 5325 5555 -625 2079 198 132 34 chrY 13666920 13667565 -37846019 + LTR1B LTR ERV1 1 740 -86 239 259 69 35 chrY 13667576 13667685 -37845899 + MER39 LTR ERV1 545 657 -50 2175 130 8 117 chrY 13667685 13668154 -37845430 - LTR8 LTR ERV1 0 691 274 343 130 0 0 chrY 13668154 13668208 -37845376 + Alu SINE Alu 1 54 -248 3378 95 15 0 chrY 13668208 13668762 -37844822 - L1PA16 LINE L1 -262 5904 5315 598 223 7 22 chrY 13668869 13669008 -37844576 + AluJo SINE Alu 1 137 -175 239 122 20 0 chrY 13670098 13670147 -37843437 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 335 140 94 41 chrY 13670229 13670370 -37843214 + (TAGA)n Simple_repeat Simple_repeat 1 133 -47 293 100 20 0 chrY 13670370 13670420 -37843164 + (CATA)n Simple_repeat Simple_repeat 2 52 0 424 269 80 76 chrY 13670421 13670960 -37842624 + MER34 LTR ERV1 1 541 -1 335 140 94 41 chrY 13670960 13670987 -37842597 + (TAGA)n Simple_repeat Simple_repeat 132 180 0 623 109 0 43 chrY 13671010 13671148 -37842436 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 28 29 0 0 chrY 13671266 13671301 -37842283 + AT_rich Low_complexity Low_complexity 1 35 0 447 15 0 45 chrY 13671594 13671661 -37841923 + L1PA2 LINE L1 6092 6155 0 2456 47 7 0 chrY 13671670 13671967 -37841617 + AluY SINE Alu 1 299 -12 1663 195 26 0 chrY 13672094 13672396 -37841188 + AluJo SINE Alu 1 310 -2 1997 155 3 0 chrY 13673088 13673391 -37840193 + AluSx SINE Alu 1 304 -8 1285 260 10 0 chrY 13674665 13674969 -37838615 - AluJb SINE Alu -5 307 1 290 226 143 0 chrY 13675076 13675160 -37838424 - MER5B DNA MER1_type 0 178 83 337 128 0 12 chrY 13675559 13675637 -37837947 - MLT2B3 LTR ERVL 0 554 408 716 87 16 49 chrY 13675681 13675864 -37837720 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 603 128 5 53 chrY 13675905 13676092 -37837492 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 1839 171 3 3 chrY 13676229 13676539 -37837045 + AluSx SINE Alu 1 310 -2 3552 147 11 24 chrY 13677425 13678087 -37835497 - MER39B LTR ERV1 0 653 1 741 53 0 0 chrY 13678310 13678404 -37835180 + (CATTG)n Simple_repeat Simple_repeat 2 95 0 981 129 0 14 chrY 13678423 13678570 -37835014 - AluSg/x SINE Alu -45 267 123 572 99 25 16 chrY 13678585 13678706 -37834878 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 198 128 0 0 chrY 13678926 13678965 -37834619 + (TA)n Simple_repeat Simple_repeat 2 40 0 347 253 23 0 chrY 13678966 13679053 -37834531 + L1MC4 LINE L1 6614 6702 -1340 182 179 18 0 chrY 13679098 13679154 -37834430 + (TA)n Simple_repeat Simple_repeat 2 58 0 1269 240 33 0 chrY 13680673 13680971 -37832613 - AluJo SINE Alu 0 307 1 622 219 0 0 chrY 13680983 13681106 -37832478 - AluJb SINE Alu -189 123 1 595 247 44 43 chrY 13681584 13681794 -37831790 + MLT1E1 LTR MaLR 33 247 -407 1532 147 60 7 chrY 13681835 13682195 -37831389 - L1PB4 LINE L1 -600 5556 5184 * 3035 175 5 18 chrY 13682194 13682764 -37830820 + L1PB4 LINE L1 5565 6127 -29 501 173 209 0 chrY 13682766 13682876 -37830708 + FLAM_C SINE Alu 1 133 0 746 58 19 0 chrY 13684355 13684458 -37829126 + (TATTG)n Simple_repeat Simple_repeat 3 107 0 2585 161 0 2 chrY 13684460 13684894 -37828690 - L1PB4 LINE L1 -17 6139 5707 2851 212 52 53 chrY 13684894 13685851 -37827733 + L1MA5 LINE L1 5345 6300 0 21 36 0 0 chrY 13686301 13686329 -37827255 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chrY 13686655 13686688 -37826896 + AT_rich Low_complexity Low_complexity 1 33 0 478 139 0 0 chrY 13687100 13687172 -37826412 - THE1B LTR MaLR -292 72 1 313 133 398 24 chrY 13687172 13687255 -37826329 - MER4C LTR ERV1 -50 415 302 1822 124 22 68 chrY 13687324 13687694 -37825890 - MER4A LTR ERV1 -311 353 1 2094 135 0 0 chrY 13688429 13688732 -37824852 + AluSc SINE Alu 1 303 -6 611 213 0 0 chrY 13688740 13688848 -37824736 + FLAM_C SINE Alu 1 108 -35 414 0 0 0 chrY 13688850 13688896 -37824688 + (CA)n Simple_repeat Simple_repeat 1 46 0 419 264 0 0 chrY 13689022 13689109 -37824475 - MIR SINE MIR -103 159 73 2081 215 35 2 chrY 13689118 13689602 -37823982 - L1MC3 LINE L1 -10 7775 7276 450 158 42 11 chrY 13689602 13689697 -37823887 + MER4A LTR ERV1 1 98 -566 1586 187 0 23 chrY 13689747 13690047 -37823537 + MER4A LTR ERV1 372 664 0 976 65 187 0 chrY 13690050 13690205 -37823379 + MER4A-int LTR ERV1 1 184 -6414 482 229 92 0 chrY 13690200 13690341 -37823243 - L1MC4 LINE L1 -517 7268 7129 * 217 322 0 0 chrY 13690619 13690678 -37822906 - L2 LINE L2 -236 3036 2978 1752 163 3 0 chrY 13690711 13690994 -37822590 + AluSp SINE Alu 1 450 0 1314 36 12 0 chrY 13690994 13691160 -37822424 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 275 158 0 18 chrY 13691160 13691217 -37822367 + GA-rich Low_complexity Low_complexity 1 56 0 1527 208 7 7 chrY 13691574 13691863 -37821721 - AluJo SINE Alu -23 289 1 372 144 0 41 chrY 13692235 13692332 -37821252 + (GGGGA)n Simple_repeat Simple_repeat 2 94 0 416 122 0 14 chrY 13692398 13692472 -37821112 + (GGGGA)n Simple_repeat Simple_repeat 3 75 0 497 219 6 18 chrY 13693194 13693363 -37820221 + GA-rich Low_complexity Low_complexity 4 170 0 602 263 3 26 chrY 13693381 13693724 -37819860 + GA-rich Low_complexity Low_complexity 1 335 0 440 171 19 0 chrY 13693738 13693843 -37819741 + GA-rich Low_complexity Low_complexity 3 109 0 201 289 0 0 chrY 13693888 13693985 -37819599 + GA-rich Low_complexity Low_complexity 2 98 0 524 214 8 39 chrY 13693998 13694335 -37819249 + GA-rich Low_complexity Low_complexity 1 326 0 564 95 0 0 chrY 13694392 13694476 -37819108 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 303 280 0 0 chrY 13694490 13694622 -37818962 + GA-rich Low_complexity Low_complexity 2 133 0 255 313 0 0 chrY 13694642 13694709 -37818875 + GA-rich Low_complexity Low_complexity 4 70 0 1069 114 9 8 chrY 13694728 13694965 -37818619 + (GGAA)n Simple_repeat Simple_repeat 1 237 0 286 270 0 14 chrY 13694984 13695132 -37818452 + GA-rich Low_complexity Low_complexity 1 146 0 741 144 0 0 chrY 13695145 13695277 -37818307 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 408 260 0 19 chrY 13695293 13695397 -37818187 + GA-rich Low_complexity Low_complexity 1 102 0 323 252 0 16 chrY 13695411 13695534 -37818050 + GA-rich Low_complexity Low_complexity 4 124 0 556 188 11 28 chrY 13695570 13695751 -37817833 + GA-rich Low_complexity Low_complexity 1 178 0 188 204 37 0 chrY 13695802 13695856 -37817728 + GA-rich Low_complexity Low_complexity 89 144 0 251 286 62 93 chrY 13696502 13696792 -37816792 - L2 LINE L2 -437 2877 2597 1362 190 21 0 chrY 13696905 13697147 -37816437 - AluSx SINE Alu -35 277 31 583 254 89 37 chrY 13697151 13697494 -37816090 - L2 LINE L2 -179 3134 2770 286 288 0 0 chrY 13697509 13697575 -37816009 - MER20 DNA MER1_type -71 148 83 252 307 119 0 chrY 13697769 13697870 -37815714 - L2 LINE L2 -752 2562 2450 492 319 7 0 chrY 13698187 13698325 -37815259 + MER5B DNA MER1_type 2 140 -38 709 236 141 5 chrY 13698389 13698580 -37815004 + MER20 DNA MER1_type 2 218 -1 692 253 18 58 chrY 13699221 13699446 -37814138 + MER20 DNA MER1_type 2 217 -2 385 295 86 0 chrY 13699859 13699964 -37813620 - MER81 DNA DNA 0 114 1 27 29 0 0 chrY 13700019 13700053 -37813531 + AT_rich Low_complexity Low_complexity 1 34 0 203 260 0 0 chrY 13700907 13700957 -37812627 + (CATA)n Simple_repeat Simple_repeat 3 52 0 * 325 251 53 18 chrY 13700929 13700977 -37812607 + (TAGA)n Simple_repeat Simple_repeat 1 46 -131 207 0 0 0 chrY 13700977 13701000 -37812584 + (CA)n Simple_repeat Simple_repeat 2 24 0 325 251 53 18 chrY 13701000 13701122 -37812462 + (TAGA)n Simple_repeat Simple_repeat 46 177 0 1893 156 3 3 chrY 13701227 13701243 -37812341 - AluSx SINE Alu -10 302 287 219 88 0 0 chrY 13701243 13701277 -37812307 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1893 156 3 3 chrY 13701277 13701562 -37812022 - AluSx SINE Alu -24 288 1 1123 216 18 27 chrY 13701694 13701903 -37811681 + MER58A DNA MER1_type 4 212 -2208 1324 181 32 42 chrY 13701903 13702213 -37811371 + AluJo SINE Alu 1 307 -5 1123 216 18 27 chrY 13702213 13702225 -37811359 + MER58A DNA MER1_type 212 223 -1 246 278 55 46 chrY 13702436 13702545 -37811039 + L1MD2 LINE L1 6242 7990 -5 235 318 65 58 chrY 13703541 13703597 -37809987 + L1ME LINE L1 5562 5616 -505 2095 125 0 13 chrY 13703597 13703902 -37809682 + AluSc SINE Alu 1 301 -8 235 318 65 58 chrY 13703902 13704106 -37809478 + L1ME LINE L1 5616 5824 -297 249 349 60 7 chrY 13704186 13704335 -37809249 - MIR SINE MIR -50 212 56 22 35 0 0 chrY 13704520 13704549 -37809035 + AT_rich Low_complexity Low_complexity 1 29 0 2089 125 23 3 chrY 13705032 13705336 -37808248 - AluSg SINE Alu 0 310 1 1512 207 4 4 chrY 13705625 13705905 -37807679 - AluJo SINE Alu -30 282 3 2007 126 0 3 chrY 13706091 13706384 -37807200 - L1P4 LINE L1 -427 5741 5450 7299 59 7 0 chrY 13708694 13709802 -37803782 + L1PA4 LINE L1 5040 6153 -2 2001 148 3 0 chrY 13710075 13710372 -37803212 + AluSx SINE Alu 1 298 -14 1725 193 7 0 chrY 13711815 13712111 -37801473 - AluSx SINE Alu -9 303 6 285 309 133 62 chrY 13712603 13712988 -37800596 - L2 LINE L2 -539 2775 2364 328 51 0 0 chrY 13713177 13713216 -37800368 + THE1B LTR MaLR 1 39 -325 5200 139 10 40 chrY 13713374 13714501 -37799083 - L1PB1 LINE L1 -24 6127 5029 1453 178 101 43 chrY 13714502 13714828 -37798756 + THE1B LTR MaLR 18 362 -2 235 221 34 40 chrY 13714933 13715082 -37798502 + (TTATA)n Simple_repeat Simple_repeat 1 148 0 2363 268 41 14 chrY 13715100 13715735 -37797849 - MER82 DNA MER2_type -1 652 1 191 364 45 0 chrY 13715768 13715834 -37797750 - L2 LINE L2 -4 3268 3200 2698 168 80 28 chrY 13716514 13717090 -37796494 + L1MB7 LINE L1 5567 6172 -12 2093 121 0 19 chrY 13717262 13717577 -37796007 - AluY SINE Alu -2 309 1 22 0 0 0 chrY 13717603 13717625 -37795959 + AT_rich Low_complexity Low_complexity 1 22 0 1852 165 7 3 chrY 13718463 13718754 -37794830 + AluSx SINE Alu 1 292 -20 1426 211 10 30 chrY 13719308 13719612 -37793972 + AluJb SINE Alu 1 298 -14 2936 13 0 0 chrY 13720220 13720560 -37793024 + AluYb8 SINE Alu 1 340 0 1052 191 22 49 chrY 13720905 13721130 -37792454 - MER20 DNA MER1_type 0 219 1 242 322 46 63 chrY 13722465 13722639 -37790945 + MIR SINE MIR 65 235 -27 1356 210 13 23 chrY 13723392 13723701 -37789883 + AluJb SINE Alu 1 306 -6 28 19 0 56 chrY 13724333 13724387 -37789197 + AT_rich Low_complexity Low_complexity 1 51 0 344 257 37 9 chrY 13724448 13724557 -37789027 - L1ME4a LINE L1 -202 5919 5808 243 216 196 29 chrY 13724570 13724672 -37788912 + MER58B DNA MER1_type 11 129 -212 1320 206 0 43 chrY 13724673 13724926 -37788658 + AluSx SINE Alu 1 242 -70 797 249 56 14 chrY 13724934 13725147 -37788437 + MER58B DNA MER1_type 118 339 -2 314 250 53 8 chrY 13726105 13726237 -37787347 + MER103 DNA DNA 25 162 -4 424 284 36 75 chrY 13726336 13726528 -37787056 + L1 LINE L1 4227 4425 -1721 1562 183 0 36 chrY 13726528 13726834 -37786750 + AluJb SINE Alu 11 305 -7 424 284 36 75 chrY 13726834 13727136 -37786448 + L1 LINE L1 4425 4697 -1449 3136 211 65 18 chrY 13727281 13728117 -37785467 + L1MDa LINE L1 1538 2412 -4128 949 253 18 5 chrY 13728116 13728337 -37785247 - L1MD1 LINE L1 -101 6141 5918 * 353 135 54 0 chrY 13728348 13728422 -37785162 + L1MD1 LINE L1 6163 6240 -2 1951 156 0 0 chrY 13728522 13728817 -37784767 - AluSc SINE Alu -13 296 2 656 289 0 13 chrY 13730130 13730289 -37783295 - MER58A DNA MER1_type 0 158 2 475 204 0 0 chrY 13730877 13730970 -37782614 + AluJ/FRAM SINE Alu 217 309 -3 1572 219 78 61 chrY 13731644 13731907 -37781677 + MER66B LTR ERV1 4 280 -206 2046 154 3 0 chrY 13731907 13732213 -37781371 + AluSx SINE Alu 1 307 -5 1572 219 78 61 chrY 13732213 13732424 -37781160 + MER66B LTR ERV1 280 486 0 334 302 0 0 chrY 13732670 13732756 -37780828 - MER5A DNA MER1_type -84 105 20 218 246 0 49 chrY 13732898 13732959 -37780625 - MER5B DNA MER1_type -8 170 113 1973 213 50 11 chrY 13733010 13733466 -37780118 - L1MB5 LINE L1 -8 6166 5693 185 0 40 0 chrY 13733527 13733552 -37780032 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 270 116 0 0 chrY 13733562 13733605 -37779979 + (CA)n Simple_repeat Simple_repeat 2 44 0 1611 177 20 99 chrY 13733646 13734041 -37779543 + MLT1A1 LTR MaLR 1 364 -1 337 228 0 13 chrY 13734042 13734121 -37779463 - L1MB5 LINE L1 -566 5618 5541 506 196 19 146 chrY 13734254 13734317 -37779267 + MER5A DNA MER1_type 14 47 -142 1598 201 10 0 chrY 13734317 13734610 -37778974 + AluSx SINE Alu 1 296 -16 506 196 19 146 chrY 13734610 13734704 -37778880 + MER5A DNA MER1_type 47 151 -38 324 288 61 34 chrY 13734717 13735043 -37778541 - L1ME4a LINE L1 -187 5934 5600 31 44 0 0 chrY 13735232 13735277 -37778307 + AT_rich Low_complexity Low_complexity 1 45 0 3144 163 89 8 chrY 13736180 13736776 -37776808 + LTR9B LTR ERV1 1 644 0 1753 199 88 32 chrY 13737732 13738165 -37775419 + LTR2B LTR ERV1 32 488 -2 1070 147 0 0 chrY 13738166 13738322 -37775262 + Harlequin LTR ERV1 1 156 -6740 5077 205 13 0 chrY 13738322 13739224 -37774360 + Harlequin LTR ERV1 456 1369 -6444 * 15401 198 7 19 chrY 13739222 13742993 -37770591 + Harlequin LTR ERV1 1480 5233 -2580 4306 133 45 35 chrY 13742989 13743932 -37769652 + pTR5 LTR ERV1 741 2025 -413 * 264 235 0 47 chrY 13743932 13744017 -37769567 + LTR30 LTR ERV1 544 624 -98 32899 109 29 13 chrY 13744017 13749122 -37764462 + HERV9 LTR ERV1 2 4944 -1935 463 164 41 76 chrY 13749123 13749460 -37764124 + HERV9 LTR ERV1 702 1141 -5755 315 200 0 0 chrY 13749456 13749516 -37764068 + HERV9 LTR ERV1 7501 7560 -839 * 4300 147 29 29 chrY 13749521 13751056 -37762528 + HERV9 LTR ERV1 504 8399 0 338 235 31 20 chrY 13751056 13751154 -37762430 + LTR30 LTR ERV1 544 642 -80 1551 101 9 4 chrY 13751157 13751385 -37762199 + pTR5 LTR ERV1 172 400 -2038 * 5357 190 13 13 chrY 13751378 13752356 -37761228 + HERVE LTR ERV1 5229 6206 -1607 * 5708 86 1 1 chrY 13752340 13753086 -37760498 + HERVE LTR ERV1 6151 6896 0 1912 207 89 20 chrY 13753086 13753544 -37760040 + LTR2B LTR ERV1 1 490 0 1497 174 10 34 chrY 13753578 13753876 -37759708 + AluJo SINE Alu 13 303 -9 236 133 0 44 chrY 13754093 13754138 -37759446 + L1MC4 LINE L1 6658 6700 -1342 1848 160 3 3 chrY 13754675 13754963 -37758621 + AluSx SINE Alu 8 295 -17 597 90 0 0 chrY 13754964 13755053 -37758531 + (AGATG)n Simple_repeat Simple_repeat 1 89 0 1467 220 78 50 chrY 13755607 13756070 -37757514 + MER39 LTR ERV1 232 707 0 916 192 7 172 chrY 13756182 13756376 -37757208 - MLT1A1 LTR MaLR 0 365 288 458 115 11 103 chrY 13756376 13756425 -37757159 - MADE1 DNA Mariner 0 80 41 2193 98 0 44 chrY 13756425 13756742 -37756842 + AluY SINE Alu 1 303 -8 458 115 11 103 chrY 13756742 13756779 -37756805 - MADE1 DNA Mariner -39 41 2 916 192 7 172 chrY 13756779 13757027 -37756557 - MLT1A1 LTR MaLR -77 288 1 1768 167 31 0 chrY 13757631 13757919 -37755665 + AluSq SINE Alu 1 297 -16 2763 153 80 101 chrY 13757944 13758449 -37755135 - Tigger3(Golem) DNA MER2_type 0 3028 2543 1760 179 3 0 chrY 13758449 13758734 -37754850 - AluSx SINE Alu -24 288 3 2763 153 80 101 chrY 13758734 13758988 -37754596 - Tigger3(Golem) DNA MER2_type -485 2543 2285 431 289 10 0 chrY 13758984 13759088 -37754496 - Tigger3(Golem) DNA MER2_type -2924 105 1 * 1413 266 37 37 chrY 13759125 13759639 -37753945 - LTR40a LTR ERVL 0 519 6 264 68 45 0 chrY 13760457 13760501 -37753083 - L1PA7 LINE L1 -1 6153 6108 219 224 0 0 chrY 13760627 13760676 -37752908 + GA-rich Low_complexity Low_complexity 2 50 0 59 0 0 0 chrY 13760965 13761024 -37752560 + AT_rich Low_complexity Low_complexity 1 59 0 199 102 20 20 chrY 13761024 13761073 -37752511 + (TA)n Simple_repeat Simple_repeat 2 50 0 289 148 49 33 chrY 13761086 13761208 -37752376 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 2010 259 11 45 chrY 13761451 13762012 -37751572 + MLT1F LTR MaLR 1 542 0 2129 167 28 0 chrY 13762257 13762611 -37750973 - THE1B LTR MaLR 0 364 1 342 230 18 35 chrY 13762838 13762951 -37750633 + L1ME LINE L1 5713 5823 -298 1236 217 11 4 chrY 13763043 13763315 -37750269 - AluJo SINE Alu -28 284 11 246 277 0 0 chrY 13763513 13763560 -37750024 - MLT1F1 LTR MaLR -218 349 303 269 200 40 40 chrY 13766162 13766237 -37747347 - MIR SINE MIR -80 182 108 213 229 0 0 chrY 13766318 13766366 -37747218 + MIR SINE MIR 106 153 -109 269 243 43 0 chrY 13766374 13766444 -37747140 - MIR SINE MIR -95 167 95 1597 195 31 0 chrY 13766605 13766897 -37746687 + AluSx SINE Alu 9 309 -3 1504 188 16 44 chrY 13768205 13768525 -37745059 - AluJb SINE Alu -1 311 1 288 0 0 0 chrY 13771062 13771094 -37742490 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1272 177 0 102 chrY 13771253 13771558 -37742026 - AluJo SINE Alu -27 285 12 767 218 41 23 chrY 13771567 13771787 -37741797 - MER20B DNA MER1_type -23 760 537 951 201 32 27 chrY 13771844 13772063 -37741521 + AluJo SINE Alu 87 306 -6 369 277 34 8 chrY 13772397 13772516 -37741068 - MER20B DNA MER1_type -319 464 343 1855 176 3 0 chrY 13773294 13773600 -37739984 - AluSx SINE Alu 0 307 1 785 136 72 16 chrY 13773631 13773756 -37739828 - FLAM_C SINE Alu -1 132 1 1334 228 82 11 chrY 13774774 13774895 -37738689 + AluJo SINE Alu 1 112 -190 312 27 0 0 chrY 13774895 13774932 -37738652 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1334 228 82 11 chrY 13774932 13775091 -37738493 + AluJo SINE Alu 112 301 -1 559 186 23 28 chrY 13775091 13775268 -37738316 + GA-rich Low_complexity Low_complexity 2 177 0 304 202 71 125 chrY 13776610 13776778 -37736806 + HAL1 LINE L1 2347 2505 -2 202 274 113 0 chrY 13776809 13776871 -37736713 + L2 LINE L2 2679 2747 -567 307 328 25 16 chrY 13777581 13777703 -37735881 + MER5A DNA MER1_type 61 183 -6 445 291 57 48 chrY 13777750 13777960 -37735624 - L3 LINE CR1 -87 1490 1279 257 235 25 12 chrY 13777974 13778055 -37735529 + (TA)n Simple_repeat Simple_repeat 2 83 0 190 154 45 27 chrY 13778129 13778239 -37735345 + (TA)n Simple_repeat Simple_repeat 1 112 0 242 186 6 58 chrY 13778294 13778450 -37735134 + (TA)n Simple_repeat Simple_repeat 1 148 0 225 109 87 11 chrY 13778494 13778586 -37734998 + (CTATA)n Simple_repeat Simple_repeat 2 100 0 317 152 38 89 chrY 13778589 13778747 -37734837 + (CATATA)n Simple_repeat Simple_repeat 3 152 0 237 136 23 91 chrY 13778772 13778860 -37734724 + Charlie7 DNA MER1_type 2465 2546 -66 1414 196 53 0 chrY 13778939 13779205 -37734379 - AluJo SINE Alu -28 284 5 192 182 0 0 chrY 13779212 13779245 -37734339 - L3 LINE CR1 -308 1269 1237 1400 167 0 5 chrY 13779267 13779488 -37734096 - AluSx SINE Alu -87 225 6 439 155 0 0 chrY 13779492 13779563 -37734021 - L1MB5 LINE L1 -310 5864 5794 2124 201 11 0 chrY 13779889 13780268 -37733316 - Tigger2 DNA MER2_type -1 2717 2335 1995 204 12 29 chrY 13780450 13780866 -37732718 + Tigger2a DNA MER2_type 7 415 -19 1613 152 86 20 chrY 13781645 13781947 -37731637 + MER84 LTR ERVI 1 322 -185 786 192 22 33 chrY 13782000 13782182 -37731402 + MLT2B1 LTR ERVL 1 180 -340 1469 205 7 14 chrY 13782777 13783060 -37730524 - AluJo SINE Alu -26 286 6 982 282 105 67 chrY 13783190 13783623 -37729961 + MER21B LTR ERV1 3 477 -386 1423 203 6 37 chrY 13783623 13783944 -37729640 - AluJo SINE Alu -1 311 1 982 282 105 67 chrY 13783944 13784231 -37729353 + MER21B LTR ERV1 477 751 -112 1986 132 42 45 chrY 13784249 13784583 -37729001 + THE1B LTR MaLR 32 364 0 2116 191 116 98 chrY 13784621 13785335 -37728249 + LTR8A LTR ERV1 1 727 0 314 293 112 0 chrY 13785341 13785457 -37728127 - MIR SINE MIR -108 154 26 339 25 0 0 chrY 13785461 13785501 -37728083 + (TTA)n Simple_repeat Simple_repeat 2 41 0 800 223 0 122 chrY 13785531 13785759 -37727825 - AluJo SINE Alu -91 221 24 2069 128 7 0 chrY 13785759 13786056 -37727528 + AluY SINE Alu 1 299 -12 800 223 0 122 chrY 13786056 13786074 -37727510 - AluJo SINE Alu -288 24 5 258 219 201 93 chrY 13786923 13787202 -37726382 - LTR16C LTR ERVL -4 487 179 1818 175 7 7 chrY 13787419 13787722 -37725862 - AluSg SINE Alu -7 303 1 907 169 14 157 chrY 13788459 13788649 -37724935 - Charlie5 DNA MER1_type -1 2623 2408 700 269 19 0 chrY 13788649 13788809 -37724775 - FAM SINE Alu -12 163 1 907 169 14 157 chrY 13788809 13788944 -37724640 - Charlie5 DNA MER1_type -216 2408 2255 3427 206 35 3 chrY 13788944 13789594 -37723990 - LTR51 LTR ERV1 0 671 1 907 169 14 157 chrY 13789594 13789652 -37723932 - Charlie5 DNA MER1_type -369 2255 9 1267 253 74 39 chrY 13790093 13790552 -37723032 - MLT1D LTR MaLR -2 503 29 225 0 0 0 chrY 13790569 13790594 -37722990 + (T)n Simple_repeat Simple_repeat 1 25 0 29 0 0 0 chrY 13791448 13791477 -37722107 + AT_rich Low_complexity Low_complexity 1 29 0 1448 207 18 0 chrY 13791477 13791752 -37721832 - AluJo SINE Alu -30 282 3 1813 163 0 10 chrY 13791898 13792193 -37721391 - AluY SINE Alu -11 300 9 226 333 40 0 chrY 13792592 13792667 -37720917 - L2 LINE L2 -61 3252 3175 240 382 0 36 chrY 13793075 13793185 -37720399 - L2 LINE L2 -11 3302 3197 708 171 7 23 chrY 13793195 13793501 -37720083 + (ATGGTG)n Simple_repeat Simple_repeat 1 300 0 268 286 0 12 chrY 13793505 13793524 -37720060 + (TGG)n Simple_repeat Simple_repeat 1 19 -64 1815 202 86 21 chrY 13793524 13793896 -37719688 - MSTD LTR MaLR 0 396 1 268 286 0 12 chrY 13793896 13793960 -37719624 + (TGG)n Simple_repeat Simple_repeat 19 83 0 245 352 33 0 chrY 13794067 13794158 -37719426 - L2 LINE L2 -239 3074 2981 291 269 113 75 chrY 13794763 13794949 -37718635 + LTR16A1 LTR ERVL 1 193 -264 1565 300 18 9 chrY 13794956 13795412 -37718172 - MLT1G LTR MaLR 0 590 131 614 210 24 17 chrY 13795412 13796044 -37717540 + L1MB3 LINE L1 5373 6117 -66 2162 136 60 28 chrY 13796044 13796397 -37717187 + THE1B LTR MaLR 1 364 0 614 210 24 17 chrY 13796397 13796462 -37717122 + L1MB3 LINE L1 6117 6180 -3 375 290 19 0 chrY 13796485 13796592 -37716992 - MLT1G LTR MaLR -457 133 25 838 222 12 0 chrY 13796607 13796774 -37716810 - AluJo SINE Alu -23 289 121 700 247 7 0 chrY 13796910 13797056 -37716528 + MLT1A1 LTR MaLR 159 305 -60 543 31 0 0 chrY 13797141 13797206 -37716378 + (TTTTC)n Simple_repeat Simple_repeat 2 66 0 2257 128 5 53 chrY 13797211 13797585 -37715999 - L1PB1 LINE L1 -2 6149 5794 3618 86 94 0 chrY 13797586 13798235 -37715349 + L1PB1 LINE L1 5116 5806 -348 549 152 105 110 chrY 13798333 13798524 -37715060 + LTR49 LTR ERV1 406 595 0 233 119 24 0 chrY 13798975 13799017 -37714567 + MADE1 DNA Mariner 1 43 -37 760 301 32 0 chrY 13799031 13799280 -37714304 - L1MB7 LINE L1 -67 6117 5861 * 35129 115 12 17 chrY 13799276 13805468 -37708116 - L1PA6 LINE L1 0 6154 11 362 100 0 0 chrY 13805477 13805527 -37708057 + MADE1 DNA Mariner 31 80 0 187 377 66 0 chrY 13807752 13807858 -37705726 + MIR SINE MIR 39 151 -57 712 256 10 10 chrY 13807903 13808098 -37705486 + L1MEc LINE L1 35 229 -6167 1301 253 35 29 chrY 13808122 13808497 -37705087 + L1MEc LINE L1 466 842 -5554 1939 243 90 46 chrY 13808558 13809683 -37703901 - L1 LINE L1 -1083 5063 3814 689 250 29 39 chrY 13811436 13811640 -37701944 + MER20 DNA MER1_type 3 204 -15 243 246 35 0 chrY 13811657 13811714 -37701870 + MER20 DNA MER1_type 161 219 0 462 79 0 0 chrY 13812305 13812368 -37701216 + (TA)n Simple_repeat Simple_repeat 2 64 0 619 0 0 47 chrY 13812836 13812879 -37700705 + (TCTA)n Simple_repeat Simple_repeat 1 121 0 619 0 0 47 chrY 13812879 13812964 -37700620 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2393 114 8 75 chrY 13815052 13815439 -37698145 + THE1B LTR MaLR 1 361 -3 257 249 150 51 chrY 13817203 13817449 -37696135 + MER34 LTR ERV1 368 535 -7 1917 151 23 0 chrY 13817903 13818208 -37695376 - AluSx SINE Alu 0 312 1 1380 194 17 50 chrY 13819110 13819409 -37694175 - AluJb SINE Alu -15 297 9 25 0 0 0 chrY 13819746 13819771 -37693813 + AT_rich Low_complexity Low_complexity 1 25 0 28638 137 12 64 chrY 13820221 13824980 -37688604 - L1PA7 LINE L1 -1 6153 1829 5622 35 2 0 chrY 13824980 13825602 -37687982 - L1PA3 LINE L1 -6 6149 5527 28638 137 12 64 chrY 13825602 13827340 -37686244 - L1PA7 LINE L1 -4325 1829 2 568 236 8 8 chrY 13828237 13828360 -37685224 - FLAM_C SINE Alu -17 126 4 865 208 0 12 chrY 13828360 13828533 -37685051 + AluJo/FRAM SINE Alu 137 307 -5 1614 271 56 60 chrY 13829196 13829385 -37684199 + MER21B LTR ERV1 1 189 -674 1695 165 18 4 chrY 13829385 13829687 -37683897 + AluSx SINE Alu 1 306 0 1614 271 56 60 chrY 13829687 13830060 -37683524 + MER21B LTR ERV1 189 563 -300 1928 154 3 3 chrY 13830060 13830359 -37683225 - AluSx SINE Alu -13 299 1 1614 271 56 60 chrY 13830359 13830532 -37683052 + MER21B LTR ERV1 563 735 -128 225 0 0 0 chrY 13830615 13830640 -37682944 + (A)n Simple_repeat Simple_repeat 1 25 0 3214 239 82 43 chrY 13832898 13834247 -37679337 + L1M4 LINE L1 2341 3742 -2404 488 294 35 10 chrY 13834250 13834447 -37679137 + Charlie7 DNA MER1_type 1932 2133 -479 252 0 0 0 chrY 13834451 13834479 -37679105 + (TA)n Simple_repeat Simple_repeat 1 28 0 1003 161 11 22 chrY 13834482 13834662 -37678922 + AluSg/x SINE Alu 133 310 0 522 270 83 19 chrY 13834697 13834892 -37678692 + Charlie7 DNA MER1_type 2219 2400 -212 1433 214 34 0 chrY 13834892 13835187 -37678397 - AluJo SINE Alu -7 305 1 522 270 83 19 chrY 13835187 13835354 -37678230 + Charlie7 DNA MER1_type 2400 2604 -8 216 307 68 11 chrY 13835452 13835540 -37678044 + MIR SINE MIR 81 173 -89 763 257 120 51 chrY 13836663 13837095 -37676489 + MLT1C LTR MaLR 6 467 0 1286 140 104 107 chrY 13837487 13837623 -37675961 + AluSg1 SINE Alu 1 136 -173 2017 116 24 0 chrY 13837623 13837916 -37675668 + AluY SINE Alu 1 300 -11 1286 140 104 107 chrY 13837916 13837931 -37675653 + AluSg1 SINE Alu 136 150 -159 2286 65 0 0 chrY 13837931 13838210 -37675374 + AluY SINE Alu 1 279 -32 189 0 0 0 chrY 13838210 13838231 -37675353 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1286 140 104 107 chrY 13838231 13838385 -37675199 + AluSg1 SINE Alu 148 307 -2 183 156 0 0 chrY 13839078 13839110 -37674474 + L2 LINE L2 3265 3296 -17 831 196 23 0 chrY 13839163 13839336 -37674248 + L1MA8 LINE L1 6110 6286 -5 2039 198 90 28 chrY 13840220 13840730 -37672854 + MER67A LTR ERV1 1 542 -1 1568 197 92 32 chrY 13841592 13842029 -37671555 + MLT1C LTR MaLR 5 467 0 541 254 0 8 chrY 13842765 13842887 -37670697 - AluSq/x SINE Alu -177 136 16 266 358 34 6 chrY 13844180 13844356 -37669228 + MER58B DNA MER1_type 120 300 -41 25 0 0 0 chrY 13844938 13844963 -37668621 + AT_rich Low_complexity Low_complexity 1 25 0 1918 163 3 16 chrY 13845884 13846062 -37667522 - AluSx SINE Alu -1 311 137 2852 6 0 6 chrY 13846062 13846373 -37667211 - AluYa5 SINE Alu -2 309 1 1918 163 3 16 chrY 13846373 13846507 -37667077 - AluSx SINE Alu -175 137 3 1330 157 25 4 chrY 13847684 13847926 -37665658 - L1MB3 LINE L1 -13 6170 5924 1167 146 73 16 chrY 13847927 13848119 -37665465 + MER51A LTR ERV1 1 203 -431 1291 201 53 27 chrY 13848500 13848799 -37664785 + AluJb SINE Alu 1 307 -5 216 349 28 9 chrY 13849501 13849610 -37663974 + MIR SINE MIR 2 112 -150 1434 193 6 55 chrY 13850866 13851177 -37662407 + AluJo SINE Alu 1 296 -16 553 187 65 0 chrY 13851300 13851423 -37662161 - MLT2B1 LTR ERVL -364 156 26 8136 131 68 16 chrY 13852181 13855156 -37658428 + L1PA6 LINE L1 469 3289 -2865 8136 146 48 0 chrY 13855156 13857573 -37656011 + L1PA6 LINE L1 3660 6153 -1 8136 131 68 16 chrY 13857573 13857588 -37655996 + L1PA6 LINE L1 3289 6153 -1 623 258 18 0 chrY 13857901 13858064 -37655520 - MLT1A1 LTR MaLR -1 364 199 189 107 0 0 chrY 13859909 13859937 -37653647 + (CA)n Simple_repeat Simple_repeat 1 28 0 4610 193 106 71 chrY 13860460 13861111 -37652473 + L1MB2 LINE L1 3226 3853 -2318 811 140 0 0 chrY 13861111 13861225 -37652359 + AluSg/x SINE Alu 183 296 -16 4610 193 106 71 chrY 13861225 13863045 -37650539 + L1MB2 LINE L1 3853 5910 -261 1768 136 55 0 chrY 13863045 13863317 -37650267 - AluSx SINE Alu -25 287 1 4610 193 106 71 chrY 13863317 13863557 -37650027 + L1MB2 LINE L1 5910 6140 -31 1481 210 31 7 chrY 13866557 13866847 -37646737 + AluSx SINE Alu 1 297 -15 507 205 55 39 chrY 13867690 13867817 -37645767 - AluJb SINE Alu -182 130 2 1801 152 99 18 chrY 13868767 13869110 -37644474 + THE1C LTR MaLR 1 371 -4 3786 119 174 3 chrY 13869499 13870200 -37643384 - pTR5 LTR ERV1 0 2468 1520 3356 90 18 20 chrY 13870195 13870685 -37642899 - HERV17 LTR ERV1 -155 8244 7756 * 843 139 0 0 chrY 13870679 13870816 -37642768 - HERV17 LTR ERV1 -5176 1720 1584 * 1765 115 54 0 chrY 13870793 13871072 -37642512 - HERV17 LTR ERV1 -3380 4405 1275 * 1821 108 8 106 chrY 13871059 13871456 -37642128 - HERV17 LTR ERV1 -7577 1049 692 27370 118 15 9 chrY 13871462 13876298 -37637286 - HERV17 LTR ERV1 -3445 4954 1 4038 127 176 47 chrY 13876298 13877029 -37636555 - LTR12 LTR ERV1 0 826 1 39 22 0 0 chrY 13877143 13877189 -37636395 + AT_rich Low_complexity Low_complexity 1 46 0 1440 202 50 0 chrY 13877517 13877799 -37635785 - AluJo SINE Alu -16 296 1 340 256 13 0 chrY 13878616 13878694 -37634890 + MER5A DNA MER1_type 4 82 -107 2272 158 23 33 chrY 13878694 13879123 -37634461 - MSTC LTR MaLR 0 428 4 531 209 36 0 chrY 13879126 13879236 -37634348 + MER5A DNA MER1_type 76 189 0 963 271 34 4 chrY 13880554 13880820 -37632764 - MER89 LTR ERV1 0 559 286 1891 218 34 14 chrY 13881244 13881662 -37631922 + MSTB LTR MaLR 1 426 0 7245 216 42 2 chrY 13881703 13883186 -37630398 + MSTB-int LTR MaLR 110 1651 0 767 186 7 7 chrY 13883186 13883326 -37630258 + MSTB LTR MaLR 1 140 -286 1710 137 196 14 chrY 13883329 13883742 -37629842 + LTR14B LTR ERVK 1 608 0 10960 110 15 1 chrY 13883742 13885273 -37628311 + HERVK14 LTR ERVK 1 1553 -4392 11203 95 13 40 chrY 13885276 13886437 -37627147 + HERVK14 LTR ERVK 3976 4983 -962 2353 91 3 0 chrY 13886437 13886734 -37626850 + AluY SINE Alu 3 300 -11 11203 95 13 40 chrY 13886734 13887276 -37626308 + HERVK14 LTR ERVK 4983 5538 -407 1207 202 0 5 chrY 13887278 13887491 -37626093 + PRIMA41-int LTR ERV1 7545 7756 0 * 1513 112 0 0 chrY 13887306 13887511 -37626073 + HERVK14 LTR ERVK 5575 5779 -166 461 261 43 48 chrY 13887504 13887692 -37625892 + HERVK LTR ERVK 7054 7240 -3 * 1633 144 214 12 chrY 13887697 13888106 -37625478 + LTR14B LTR ERVK 1 608 0 324 202 0 50 chrY 13888106 13888199 -37625385 + MSTA LTR MaLR 136 222 -206 1449 90 20 0 chrY 13888199 13888400 -37625184 - HERVK14 LTR ERVK -1734 4211 4007 823 201 57 0 chrY 13888400 13888595 -37624989 + MSTA LTR MaLR 222 457 0 39238 55 2 2 chrY 13889543 13895283 -37618301 + L1PA3 LINE L1 416 6154 -1 22 0 0 0 chrY 13895882 13895904 -37617680 + AT_rich Low_complexity Low_complexity 1 22 0 300 177 61 134 chrY 13896251 13896415 -37617169 + L1ME1 LINE L1 5146 5297 -849 860 212 93 21 chrY 13896433 13896849 -37616735 + MLT1D LTR MaLR 12 501 -4 1153 256 85 59 chrY 13896856 13897434 -37616150 + L1ME1 LINE L1 5569 6161 -5 1409 216 14 31 chrY 13898164 13898456 -37615128 + AluJo SINE Alu 2 288 -14 1008 102 0 0 chrY 13898457 13898604 -37614980 + (TA)n Simple_repeat Simple_repeat 1 147 0 503 252 181 11 chrY 13899607 13899956 -37613628 + L1M4c LINE L1 2005 2412 -3972 491 138 0 0 chrY 13899956 13900036 -37613548 + AluS SINE Alu 231 310 -1 2653 231 20 58 chrY 13900052 13900958 -37612626 + L1M4c LINE L1 2399 3269 -3113 585 183 139 22 chrY 13900962 13901099 -37612485 + MLT1D LTR MaLR 235 387 -118 235 174 0 0 chrY 13901122 13901168 -37612416 + MLT1D LTR MaLR 581 626 0 1813 187 89 6 chrY 13901506 13901864 -37611720 - MLT1B LTR MaLR -2 388 1 204 40 0 0 chrY 13901890 13901915 -37611669 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1804 164 10 3 chrY 13903112 13903404 -37610180 - AluSx SINE Alu -18 294 1 192 324 0 14 chrY 13904502 13904576 -37609008 - L2 LINE L2 -50 3263 3191 189 0 0 0 chrY 13904954 13904975 -37608609 + (A)n Simple_repeat Simple_repeat 1 21 0 180 97 0 0 chrY 13905486 13905517 -37608067 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1864 185 0 0 chrY 13905666 13905968 -37607616 + AluSx SINE Alu 10 311 -1 2950 120 17 19 chrY 13905989 13906454 -37607130 + LTR15 LTR ERV1 14 477 -16 7155 161 26 20 chrY 13906470 13907773 -37605811 + HERV15 LTR ERV1 1 1124 -7302 1236 267 45 9 chrY 13907775 13908105 -37605479 + HERV15 LTR ERV1 1046 1387 -7039 731 264 23 6 chrY 13908095 13908269 -37605315 + HERV15 LTR ERV1 1704 1880 -6546 * 4334 217 17 0 chrY 13908259 13909071 -37604513 + HERV3 LTR ERV1 4600 5425 -3001 40623 57 24 1 chrY 13909071 13915082 -37598502 + L1PA3 LINE L1 7 6155 0 225 119 0 0 chrY 13915092 13915134 -37598450 + (A)n Simple_repeat Simple_repeat 1 42 0 2026 202 0 0 chrY 13915143 13915484 -37598100 + HERV3 LTR ERV1 5414 5754 -2672 353 164 0 0 chrY 13915485 13915540 -37598044 + Alu SINE Alu 1 55 -244 8334 119 16 13 chrY 13915542 13917334 -37596250 + HERV3 LTR ERV1 504 8399 0 1725 91 29 0 chrY 13917334 13917558 -37596026 + pTR5 LTR ERV1 175 405 -2033 19373 99 8 5 chrY 13917551 13920192 -37593392 + HERV3 LTR ERV1 6086 8734 -1 2738 106 24 62 chrY 13920192 13920646 -37592938 + LTR15 LTR ERV1 1 437 -56 264 42 28 56 chrY 13920646 13920717 -37592867 + (TTA)n Simple_repeat Simple_repeat 1 69 0 182 160 20 0 chrY 13920720 13920770 -37592814 + (CTAA)n Simple_repeat Simple_repeat 2 52 0 364 91 36 0 chrY 13920779 13920834 -37592750 + LTR15 LTR ERV1 421 477 -16 746 207 61 28 chrY 13921204 13921417 -37592167 + MLT1D LTR MaLR 1 220 -285 576 198 19 0 chrY 13922357 13922463 -37591121 - LTR9B LTR ERV1 0 644 537 668 13 0 0 chrY 13922463 13922538 -37591046 - L1PA5 LINE L1 -369 5785 5711 3119 55 3 3 chrY 13922538 13922947 -37590637 + L1PA5 LINE L1 5785 6154 0 2845 160 87 4 chrY 13922947 13923453 -37590131 - LTR9B LTR ERV1 -96 548 1 275 271 178 50 chrY 13926399 13926702 -37586882 - L1MC4 LINE L1 -209 7833 7492 239 318 85 0 chrY 13926955 13927084 -37586500 - L1MC4a LINE L1 -648 7160 7021 339 184 41 41 chrY 13927224 13927322 -37586262 - L1MD3 LINE L1 -1132 6863 6766 1844 134 22 0 chrY 13928297 13928566 -37585018 - AluSx SINE Alu -17 295 21 518 215 107 28 chrY 13929217 13929394 -37584190 - MER3 DNA MER1_type -18 191 1 13047 157 37 16 chrY 13930699 13930778 -37582806 + Tigger1 DNA MER2_type 30 106 -2312 1964 143 7 0 chrY 13930778 13931064 -37582520 - AluSx SINE Alu -14 298 11 13047 157 37 16 chrY 13931064 13932928 -37580656 + Tigger1 DNA MER2_type 106 2034 -384 1731 136 0 88 chrY 13932928 13933266 -37580318 - AluSx SINE Alu 0 311 1 13047 157 37 16 chrY 13933266 13933660 -37579924 + Tigger1 DNA MER2_type 2034 2418 0 21 36 0 0 chrY 13935249 13935277 -37578307 + AT_rich Low_complexity Low_complexity 1 28 0 931 233 76 10 chrY 13935435 13935736 -37577848 + MER33 DNA MER1_type 4 324 0 312 230 0 27 chrY 13937208 13937282 -37576302 + MIR SINE MIR 60 131 -77 543 245 33 66 chrY 13937763 13937975 -37575609 - MER20 DNA MER1_type -13 206 2 3302 177 30 7 chrY 13938054 13938619 -37574965 + LTR22 LTR ERVK 3 580 0 2150 133 3 0 chrY 13940073 13940381 -37573203 + AluSx SINE Alu 1 309 -3 705 156 14 71 chrY 13940393 13940534 -37573050 + BC200 scRNA scRNA 10 142 -58 1561 199 15 81 chrY 13940883 13941289 -37572295 - MLT1B LTR MaLR 0 390 12 333 232 0 12 chrY 13942706 13942788 -37570796 + MER5A DNA MER1_type 24 104 -85 379 261 181 45 chrY 13942840 13942946 -37570638 + Charlie7 DNA MER1_type 35 125 -2487 1474 196 37 17 chrY 13942946 13943242 -37570342 - AluSx SINE Alu -10 302 1 379 261 181 45 chrY 13943242 13943472 -37570112 + Charlie7 DNA MER1_type 125 417 -2195 342 278 11 27 chrY 13943852 13944423 -37569161 + CT-rich Low_complexity Low_complexity 1 562 0 231 401 14 14 chrY 13944898 13945040 -37568544 - MIR SINE MIR -70 192 51 769 219 63 44 chrY 13946056 13946223 -37567361 - MER6B DNA MER2_type -656 209 36 1621 192 31 3 chrY 13946223 13946509 -37567075 + AluJb SINE Alu 1 294 -18 769 219 63 44 chrY 13946509 13946546 -37567038 - MER6B DNA MER2_type -829 36 1 333 0 0 0 chrY 13946610 13946647 -37566937 + (T)n Simple_repeat Simple_repeat 1 37 0 2054 157 3 0 chrY 13947089 13947389 -37566195 + AluSx SINE Alu 1 301 -11 334 275 55 9 chrY 13948195 13948304 -37565280 - MIR SINE MIR -124 138 25 243 0 0 0 chrY 13949378 13949405 -37564179 + (TG)n Simple_repeat Simple_repeat 2 28 0 1455 218 29 0 chrY 13949415 13949690 -37563894 - AluJo SINE Alu -27 285 3 195 42 0 0 chrY 13949852 13949876 -37563708 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1198 198 10 21 chrY 13950609 13950897 -37562687 + L1MA7 LINE L1 5945 6229 -62 2940 158 53 10 chrY 13950949 13951454 -37562130 - MER1A DNA MER1_type 0 527 1 2340 66 0 30 chrY 13951895 13952196 -37561388 - AluY SINE Alu -14 297 6 485 162 50 0 chrY 13952381 13952480 -37561104 + L1PA16 LINE L1 6063 6166 0 1306 153 35 85 chrY 13952969 13953251 -37560333 + AluJb SINE Alu 1 268 -44 954 189 57 53 chrY 13953988 13954253 -37559331 + MLT1C LTR MaLR 5 270 -197 301 398 0 9 chrY 13954579 13954692 -37558892 - MIR SINE MIR -81 127 16 2567 7 0 0 chrY 13955260 13955538 -37558046 - AluY SINE Alu -4 307 30 21 0 0 0 chrY 13955546 13955567 -37558017 + AT_rich Low_complexity Low_complexity 1 21 0 560 279 34 5 chrY 13955738 13955946 -37557638 - MER46C DNA MER2_type -4 334 121 439 227 102 8 chrY 13956509 13956637 -37556947 - MER58A DNA MER1_type 0 140 1 235 207 0 35 chrY 13957687 13957745 -37555839 - MER20 DNA MER1_type -5 214 159 672 263 40 0 chrY 13957752 13957927 -37555657 - MER20 DNA MER1_type -33 186 5 1669 171 0 0 chrY 13958161 13958407 -37555177 + AluSx SINE Alu 1 246 -66 614 245 131 35 chrY 13959007 13959302 -37554282 - MER58B DNA MER1_type 0 341 11 353 288 82 49 chrY 13959349 13959592 -37553992 - L2 LINE L2 -75 3238 2988 2934 137 36 0 chrY 13959634 13960103 -37553481 - MER1A DNA MER1_type 0 529 44 1418 195 66 0 chrY 13960145 13960417 -37553167 + AluJo SINE Alu 1 290 -22 1891 142 0 24 chrY 13960595 13960891 -37552693 + AluSg SINE Alu 1 289 -21 334 320 176 56 chrY 13961388 13961763 -37551821 - L1M4b LINE L1 -6180 679 260 193 232 19 13 chrY 13962232 13962304 -37551280 + MIR SINE MIR 70 143 -65 1825 167 3 19 chrY 13962314 13962631 -37550953 + AluSx SINE Alu 1 312 0 533 243 62 0 chrY 13962818 13962962 -37550622 + MER20 DNA MER1_type 15 167 -52 216 0 0 0 chrY 13963475 13963499 -37550085 + (T)n Simple_repeat Simple_repeat 1 24 0 675 235 174 47 chrY 13964335 13964633 -37548951 - MER4D LTR ERV1 0 779 444 299 238 6 0 chrY 13964634 13964705 -37548879 - MER4E LTR ERV1 -613 166 99 200 57 0 29 chrY 13964705 13964740 -37548844 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 299 238 6 0 chrY 13964740 13964780 -37548804 - MER4E LTR ERV1 -680 99 61 396 272 4 0 chrY 13964821 13964940 -37548644 + MER4E LTR ERV1 1 386 -397 653 228 52 26 chrY 13964950 13965143 -37548441 - LTR8 LTR ERV1 -485 206 9 1515 222 48 3 chrY 13965179 13965512 -37548072 - MER7A DNA MER2_type 0 346 1 742 166 25 18 chrY 13966393 13966556 -37547028 - MER34C LTR ERV1 -2 583 420 302 96 0 19 chrY 13966570 13966622 -37546962 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 945 190 61 122 chrY 13967355 13967650 -37545934 - AluJo SINE Alu -25 287 11 343 322 87 24 chrY 13967650 13967858 -37545726 - HAL1 LINE L1 -920 1587 1367 345 100 0 0 chrY 13967940 13967990 -37545594 + (TC)n Simple_repeat Simple_repeat 1 50 0 452 272 23 15 chrY 13967991 13968252 -37545332 - HAL1 LINE L1 -1233 1274 1012 219 69 0 0 chrY 13968275 13968304 -37545280 + (T)n Simple_repeat Simple_repeat 1 29 0 1648 193 0 31 chrY 13968747 13969069 -37544515 + AluJb SINE Alu 1 312 0 2021 106 0 7 chrY 13970109 13970384 -37543200 - AluY SINE Alu -2 309 37 383 255 10 0 chrY 13970579 13970681 -37542903 - L1MD1 LINE L1 -8 6234 6132 275 130 19 0 chrY 13970772 13970826 -37542758 + CT-rich Low_complexity Low_complexity 3 57 0 918 244 20 14 chrY 13970847 13971308 -37542276 - MLT1D LTR MaLR -5 500 1 22 35 0 0 chrY 13971484 13971513 -37542071 + AT_rich Low_complexity Low_complexity 1 29 0 204 200 0 0 chrY 13971519 13971584 -37542000 + (TA)n Simple_repeat Simple_repeat 2 66 0 65 74 0 0 chrY 13971595 13971730 -37541854 + AT_rich Low_complexity Low_complexity 1 135 0 235 225 50 12 chrY 13971735 13971763 -37541821 + (TA)n Simple_repeat Simple_repeat 1 26 -140 3864 106 14 10 chrY 13971763 13972347 -37541237 - L1PA8A LINE L1 0 6131 5546 235 225 50 12 chrY 13972347 13972478 -37541106 + (TA)n Simple_repeat Simple_repeat 26 166 0 23 33 0 0 chrY 13972485 13972515 -37541069 + AT_rich Low_complexity Low_complexity 1 30 0 1030 130 38 124 chrY 13972615 13972930 -37540654 - L1MA8 LINE L1 -3 6288 6001 614 249 110 12 chrY 13972960 13973205 -37540379 - MLT1E3 LTR MaLR 0 624 356 1655 185 7 10 chrY 13973971 13974274 -37539310 + AluSx SINE Alu 1 302 -10 486 285 64 71 chrY 13974693 13975258 -37538326 - MER34B LTR ERV1 0 565 5 1329 216 30 14 chrY 13975412 13975708 -37537876 + AluJo SINE Alu 1 301 -11 2071 142 10 0 chrY 13976061 13976363 -37537221 - AluSq SINE Alu -6 307 3 3577 109 0 2 chrY 13976463 13976978 -37536606 - L1PB1 LINE L1 -8 6143 5630 207 0 0 0 chrY 13978064 13978087 -37535497 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1252 229 177 25 chrY 13978089 13978573 -37535011 - MER92B LTR ERV1 -19 617 60 2060 175 22 26 chrY 13978573 13979025 -37534559 - MER31A LTR ERV1 0 485 36 42 36 0 0 chrY 13979484 13979540 -37534044 + AT_rich Low_complexity Low_complexity 1 56 0 540 245 98 0 chrY 13980205 13980389 -37533195 - MER31A LTR ERV1 -283 202 1 504 264 7 14 chrY 13980564 13980704 -37532880 + LTR69 LTR ERVL 13 151 -437 33 0 0 0 chrY 13980768 13980801 -37532783 + AT_rich Low_complexity Low_complexity 1 33 0 3953 195 19 11 chrY 13981046 13982093 -37531491 - L1MB1 LINE L1 -1 6561 5507 404 294 84 38 chrY 13982139 13982447 -37531137 - L1MB1 LINE L1 -5072 1457 1141 1425 206 21 18 chrY 13983238 13983519 -37530065 - AluJo SINE Alu -30 282 1 2175 219 42 57 chrY 13983562 13983836 -37529748 + L1MB5 LINE L1 5517 5794 -380 1734 167 71 8 chrY 13983836 13984189 -37529395 - THE1C LTR MaLR 0 375 1 2175 219 42 57 chrY 13984189 13984582 -37529002 + L1MB5 LINE L1 5794 6174 0 2347 174 11 24 chrY 13984667 13985121 -37528463 + MER83 LTR ERV1 1 448 0 4160 144 16 12 chrY 13986123 13986723 -37526861 - L1MA4A LINE L1 -8 6295 5690 1770 160 27 37 chrY 13986723 13987099 -37526485 + THE1C LTR MaLR 1 372 -3 4160 144 16 12 chrY 13987099 13987250 -37526334 - L1MA4A LINE L1 -613 5690 5541 431 130 15 179 chrY 13987597 13987759 -37525825 - MER83B-int LTR ERV1 -581 4299 3149 19662 121 12 11 chrY 13987766 13991922 -37521662 + L1PA7 LINE L1 1975 6138 -16 1705 129 29 23 chrY 13991959 13992345 -37521239 - MER83B-int LTR ERV1 -3479 3119 2732 1026 211 58 4 chrY 13992351 13992593 -37520991 + LTR8 LTR ERV1 3 257 -434 4121 94 53 40 chrY 13992593 13993084 -37520500 - MER4-int LTR ERV1 -4103 2495 1987 3386 67 9 2 chrY 13993084 13993529 -37520055 - LTR7 LTR ERV1 -2 448 1 4121 94 53 40 chrY 13993529 13993844 -37519740 - MER4-int LTR ERV1 -4611 1987 1678 1208 134 17 9 chrY 13993890 13994121 -37519463 - MER4-int LTR ERV1 -5372 1226 994 316 120 0 0 chrY 13994120 13994170 -37519414 - MER4-int LTR ERV1 -5712 886 837 * 1229 178 4 54 chrY 13994623 13994881 -37518703 - MER4A LTR ERV1 -48 616 372 943 122 131 11 chrY 13995078 13995322 -37518262 + LTR7 LTR ERV1 1 327 -123 2533 79 121 15 chrY 13995323 13995728 -37517856 + LTR7 LTR ERV1 1 448 -2 19807 105 4 29 chrY 13995730 13998788 -37514796 + HERVH LTR ERV1 1 2985 -4728 802 168 20 7 chrY 13998784 13998933 -37514651 + HERVH LTR ERV1 3140 3290 -4423 * 3474 106 6 6 chrY 13998923 13999424 -37514160 + HERVH LTR ERV1 3492 3992 -3721 4499 142 0 0 chrY 13999427 14000089 -37513495 + HERVH LTR ERV1 4488 5149 -2564 1276 163 23 0 chrY 14000090 14000305 -37513279 + HERVH LTR ERV1 5600 5819 -1894 * 2349 111 48 13 chrY 14000303 14000682 -37512902 + HERVH LTR ERV1 7322 7713 0 2548 110 122 5 chrY 14000682 14001083 -37512501 + LTR7 LTR ERV1 1 448 -2 837 119 0 8 chrY 14001087 14001213 -37512371 + LTR7 LTR ERV1 326 450 0 1266 224 16 20 chrY 14001693 14001997 -37511587 - L1MB1 LINE L1 -1 6167 5865 1073 181 0 5 chrY 14001997 14002185 -37511399 - AluSg/x SINE Alu -10 302 116 5827 102 32 3 chrY 14002185 14002943 -37510641 - LTR17 LTR ERV1 0 780 1 649 214 8 0 chrY 14002944 14003061 -37510523 - FLAM_C SINE Alu -15 118 1 293 241 25 0 chrY 14003061 14003140 -37510444 - L1MB1 LINE L1 -293 5875 5795 807 129 0 0 chrY 14003176 14003292 -37510292 + MLT2B2 LTR ERVL 1 116 -399 1420 181 24 31 chrY 14003295 14003583 -37510001 - L1PB4 LINE L1 -1 6155 5870 237 33 33 0 chrY 14003632 14003662 -37509922 + L1P5 LINE L1 5829 5859 -297 * 446 139 0 109 chrY 14003652 14003753 -37509831 - L1PB4 LINE L1 -284 5872 5783 232 256 122 12 chrY 14003775 14003857 -37509727 - L1MC4 LINE L1 -1338 6704 6614 * 282 160 20 0 chrY 14003848 14003911 -37509673 - L1P3 LINE L1 -363 5791 5728 240 380 11 11 chrY 14003975 14004067 -37509517 - MIR SINE MIR -57 151 60 1264 230 10 37 chrY 14004071 14004371 -37509213 + AluJo SINE Alu 1 292 -20 25 0 0 0 chrY 14004374 14004399 -37509185 + AT_rich Low_complexity Low_complexity 1 25 0 2054 113 13 36 chrY 14004696 14005005 -37508579 + AluY SINE Alu 3 304 -7 21 57 0 0 chrY 14005014 14005049 -37508535 + AT_rich Low_complexity Low_complexity 1 35 0 8194 49 4 0 chrY 14005591 14007328 -37506256 - L1PA4 LINE L1 0 6155 4415 5314 62 12 0 chrY 14007328 14008008 -37505576 + L1PA4 LINE L1 3709 4396 -1750 1730 180 3 20 chrY 14008153 14008458 -37505126 - AluSx SINE Alu -3 309 10 387 0 0 0 chrY 14008768 14008811 -37504773 + (CA)n Simple_repeat Simple_repeat 2 44 0 1595 185 0 56 chrY 14008835 14009138 -37504446 - AluSx SINE Alu -26 286 1 35154 110 12 10 chrY 14009263 14015399 -37498185 - L1PA6 LINE L1 0 6154 11 1894 138 0 35 chrY 14015424 14015768 -37497816 - AluY SINE Alu 0 343 11 204 351 14 0 chrY 14015814 14015888 -37497696 + L2 LINE L2 2458 2532 -782 2025 125 0 0 chrY 14016619 14016946 -37496638 - AluY SINE Alu 0 327 1 1632 249 122 21 chrY 14017136 14017669 -37495915 - MLT1E LTR MaLR -6 587 1 25 65 0 0 chrY 14017718 14017764 -37495820 + AT_rich Low_complexity Low_complexity 1 46 0 799 192 4 113 chrY 14017834 14018063 -37495521 + AluSg/x SINE Alu 104 307 -5 301 241 134 27 chrY 14018087 14018199 -37495385 - MIR SINE MIR -74 188 65 1012 149 0 12 chrY 14018527 14018688 -37494896 - AluJo SINE Alu -34 278 120 791 261 51 10 chrY 14018694 14018889 -37494695 - AluJo SINE Alu -108 204 2 1774 170 0 7 chrY 14019316 14019599 -37493985 + AluSx SINE Alu 1 281 -31 207 0 0 0 chrY 14019602 14019625 -37493959 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2160 117 7 3 chrY 14019666 14019965 -37493619 - AluSc SINE Alu -9 300 1 4910 119 31 4 chrY 14020394 14021097 -37492487 - LTR30 LTR ERV1 0 722 1 939 171 25 113 chrY 14021126 14021365 -37492219 + MER20 DNA MER1_type 1 218 -1 206 219 68 27 chrY 14021444 14021517 -37492067 + MIR SINE MIR 186 261 -1 913 188 11 17 chrY 14023917 14024093 -37489491 + MER20 DNA MER1_type 45 219 0 1762 166 18 0 chrY 14024834 14025137 -37488447 - AluSg SINE Alu 0 308 1 939 160 63 6 chrY 14025229 14025404 -37488180 - L1MB3 LINE L1 -2 6181 5997 21 0 0 0 chrY 14025416 14025437 -37488147 + AT_rich Low_complexity Low_complexity 1 21 0 358 253 68 41 chrY 14026190 14026336 -37487248 + MIR3 SINE MIR 42 191 -17 22 0 0 0 chrY 14026429 14026451 -37487133 + AT_rich Low_complexity Low_complexity 1 22 0 1322 226 7 14 chrY 14026452 14026731 -37486853 - AluJo SINE Alu -35 277 1 268 347 13 0 chrY 14026732 14026807 -37486777 + MIR3 SINE MIR 108 183 -25 209 277 0 0 chrY 14027174 14027221 -37486363 - L2 LINE L2 -963 2351 2305 351 180 67 22 chrY 14028086 14028175 -37485409 + L1PB4 LINE L1 6063 6155 -1 778 200 0 0 chrY 14028195 14028310 -37485274 + FLAM_C SINE Alu 2 116 -17 1276 215 13 60 chrY 14028335 14028651 -37484933 + AluJo SINE Alu 2 302 0 236 293 0 17 chrY 14028680 14028738 -37484846 - MIR3 SINE MIR -53 155 99 1809 181 0 13 chrY 14028924 14029239 -37484345 - AluSx SINE Alu -1 311 1 1121 172 0 0 chrY 14029892 14030061 -37483523 + AluJo SINE Alu 37 205 -107 1611 195 3 10 chrY 14032275 14032572 -37481012 + AluSx SINE Alu 1 295 -17 421 32 32 0 chrY 14033140 14033203 -37480381 + (TG)n Simple_repeat Simple_repeat 2 66 0 763 148 6 28 chrY 14033235 14033417 -37480167 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 439 163 12 25 chrY 14033461 14033621 -37479963 + (TAGA)n Simple_repeat Simple_repeat 1 158 0 303 152 38 29 chrY 14033666 14033771 -37479813 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 258 81 0 0 chrY 14034237 14034274 -37479310 + (A)n Simple_repeat Simple_repeat 1 37 0 255 31 0 0 chrY 14034356 14034388 -37479196 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 2695 27 0 0 chrY 14035800 14036101 -37477483 - AluYa5 SINE Alu -10 301 1 429 243 170 34 chrY 14037070 14037276 -37476308 - MLT1J2 LTR MaLR -44 406 173 1712 144 3 110 chrY 14037871 14038226 -37475358 + MER7A DNA MER2_type 2 316 -30 223 245 0 20 chrY 14038357 14038459 -37475125 + (TATATG)n Simple_repeat Simple_repeat 5 104 0 215 333 60 33 chrY 14039210 14039393 -37474191 - MER5A DNA MER1_type -1 188 1 325 254 157 49 chrY 14039501 14039626 -37473958 + MER112 DNA MER1_type 35 188 -72 289 42 21 21 chrY 14039626 14039674 -37473910 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 325 254 157 49 chrY 14039674 14039733 -37473851 + MER112 DNA MER1_type 188 239 -21 282 95 0 0 chrY 14040830 14040872 -37472712 + (TA)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chrY 14042324 14042345 -37471239 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 754 236 0 14 chrY 14043023 14043157 -37470427 + AluJo SINE Alu 4 137 -175 1387 215 10 33 chrY 14043157 14043464 -37470120 + AluJo SINE Alu 1 300 -12 754 236 0 14 chrY 14043464 14043477 -37470107 + AluJo SINE Alu 137 149 -163 190 388 53 44 chrY 14043754 14043981 -37469603 + L2 LINE L2 3026 3254 -18 1919 170 0 6 chrY 14046380 14046691 -37466893 + AluSx SINE Alu 1 309 -3 2565 167 56 4 chrY 14046825 14047155 -37466429 + MER39B LTR ERV1 91 453 -200 2244 125 0 0 chrY 14047155 14047459 -37466125 - AluSc SINE Alu -5 304 1 2565 167 56 4 chrY 14047459 14047595 -37465989 + MER39B LTR ERV1 453 581 -72 222 345 99 42 chrY 14047642 14047784 -37465800 - L2 LINE L2 -2 3270 3121 2118 166 23 27 chrY 14048745 14049222 -37464362 + L1MA7 LINE L1 5788 6262 -29 212 174 0 22 chrY 14049275 14049321 -37464263 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 246 128 0 0 chrY 14049738 14049777 -37463807 + (T)n Simple_repeat Simple_repeat 1 39 0 1159 159 29 19 chrY 14050100 14050308 -37463276 + AluJo SINE Alu 84 293 -19 506 147 52 5 chrY 14050496 14050605 -37462979 - LTR29 LTR ERV1 -527 95 1 230 348 44 22 chrY 14050644 14050779 -37462805 - MIR SINE MIR -98 164 27 897 211 29 45 chrY 14050922 14051164 -37462420 - MLT1D LTR MaLR -263 242 5 3513 202 47 22 chrY 14052542 14053306 -37460278 - LTR39 LTR ERV1 0 783 1 9917 53 1 8 chrY 14053567 14054902 -37458682 - L1PA4 LINE L1 -913 5233 3909 7018 47 12 3 chrY 14054902 14055823 -37457761 + L1PA4 LINE L1 5226 6154 -1 311 169 31 0 chrY 14056469 14056534 -37457050 - AluS SINE Alu -4 296 230 234 79 0 26 chrY 14056604 14056642 -37456942 + L1PA14 LINE L1 5750 5786 -375 2056 120 3 19 chrY 14056646 14056954 -37456630 + AluY SINE Alu 9 311 0 2412 114 13 10 chrY 14056959 14057345 -37456239 + L1PA14 LINE L1 5769 6155 -6 371 334 64 62 chrY 14058428 14059071 -37454513 + L2 LINE L2 2067 2710 -604 770 257 91 21 chrY 14059083 14059324 -37454260 - MLT1C LTR MaLR -6 461 204 1553 209 0 10 chrY 14059347 14059643 -37453941 + AluJo SINE Alu 3 295 -17 588 250 147 0 chrY 14059655 14059811 -37453773 + FRAM SINE Alu 1 175 -1 347 345 209 0 chrY 14059925 14060264 -37453320 + L2 LINE L2 2900 3309 -4 2048 178 8 3 chrY 14060269 14060628 -37452956 + THE1B LTR MaLR 4 364 0 2577 143 30 2 chrY 14062976 14063417 -37450167 + L1PA15 LINE L1 5709 6161 -4 1349 177 28 0 chrY 14064176 14064425 -37449159 - L1PA16 LINE L1 -23 6143 5888 525 141 240 0 chrY 14064425 14064546 -37449038 - MER4D LTR ERV1 -520 352 203 826 241 0 6 chrY 14064650 14064816 -37448768 - AluJb SINE Alu -22 290 126 654 124 18 18 chrY 14064834 14064947 -37448637 - L1PA7 LINE L1 0 6154 6042 366 95 16 0 chrY 14064947 14065010 -37448574 + L1P LINE L1 5066 5129 -1017 431 203 0 0 chrY 14065036 14065110 -37448474 - AluJ/FLAM SINE Alu -236 76 3 190 322 0 0 chrY 14065366 14065425 -37448159 - MIR3 SINE MIR -2 206 148 21 89 0 0 chrY 14066793 14066849 -37446735 + AT_rich Low_complexity Low_complexity 1 56 0 234 311 0 39 chrY 14067381 14067484 -37446100 - L2 LINE L2 -276 2996 2898 37700 55 33 2 chrY 14068019 14073982 -37439602 - L1PA3 LINE L1 -3 6152 1 551 162 0 0 chrY 14074293 14074438 -37439146 + FLAM_C SINE Alu 45 189 0 888 201 0 0 chrY 14074440 14074594 -37438990 + AluJo/FRAM SINE Alu 137 290 -22 21 36 0 0 chrY 14075698 14075726 -37437858 + AT_rich Low_complexity Low_complexity 1 28 0 491 309 34 6 chrY 14075911 14076089 -37437495 + MIR SINE MIR 20 202 -60 2592 42 0 6 chrY 14078223 14078534 -37435050 + AluY SINE Alu 1 309 -2 302 315 39 8 chrY 14078700 14078830 -37434754 - L2 LINE L2 0 3313 3180 213 326 63 21 chrY 14078831 14078926 -37434658 - L2 LINE L2 -40 3232 3134 23 33 0 0 chrY 14079659 14079689 -37433895 + AT_rich Low_complexity Low_complexity 1 30 0 318 220 100 0 chrY 14080252 14080352 -37433232 + L1MA4 LINE L1 6186 6295 -5 223 322 0 35 chrY 14082001 14082088 -37431496 - MIR SINE MIR 0 262 179 279 229 24 12 chrY 14082403 14082486 -37431098 - MLT1J LTR MaLR -351 160 77 909 188 0 0 chrY 14082610 14082754 -37430830 + AluSg/x SINE Alu 147 290 -20 370 114 101 38 chrY 14083321 14083400 -37430184 - ORSL DNA AcHobo -28 247 164 39 38 0 0 chrY 14083456 14083509 -37430075 + AT_rich Low_complexity Low_complexity 1 53 0 639 133 9 0 chrY 14083996 14084101 -37429483 + MER31A LTR ERV1 3 108 -377 1222 201 53 3 chrY 14084227 14084530 -37429054 + MER31A LTR ERV1 168 485 0 1976 163 7 0 chrY 14084977 14085283 -37428301 - AluSx SINE Alu -4 308 1 2775 182 41 18 chrY 14085797 14086309 -37427275 + MER1A DNA MER1_type 3 526 -1 2282 105 31 6 chrY 14086391 14086743 -37426841 - THE1C LTR MaLR 0 375 15 7367 174 95 16 chrY 14086746 14088342 -37425242 - MLT1J-int LTR MaLR 0 1580 2 2174 147 25 5 chrY 14088344 14088712 -37424872 - THE1C LTR MaLR 0 375 1 380 197 66 109 chrY 14088712 14088895 -37424689 + MLT1J2 LTR MaLR 276 450 0 1740 128 0 116 chrY 14089361 14089688 -37423896 - AluSq SINE Alu -24 289 1 350 301 73 0 chrY 14090469 14090592 -37422992 - MIR SINE MIR -36 226 95 416 357 39 0 chrY 14090650 14090779 -37422805 - MER91C DNA MER1_type 0 140 7 229 230 27 54 chrY 14091048 14091122 -37422462 + MLT1I LTR MaLR 10 81 -328 432 304 14 0 chrY 14091198 14091336 -37422248 + MLT1I LTR MaLR 230 369 -40 1989 72 0 0 chrY 14092004 14092266 -37421318 - L1PA4 LINE L1 -2 6153 5892 3131 164 36 2 chrY 14093364 14093912 -37419672 + L1PA8 LINE L1 6 572 -5889 33556 68 5 3 chrY 14093913 14100043 -37413541 + L1PA4 LINE L1 1 6144 -11 12095 169 94 30 chrY 14100060 14103577 -37410007 + L1PA8 LINE L1 566 4395 -2066 6799 72 1 3 chrY 14103579 14104729 -37408855 + L1PA5 LINE L1 5022 6184 0 7524 140 2 4 chrY 14104754 14106839 -37406745 + L1PA8 LINE L1 4383 6484 -3 27 0 0 0 chrY 14107737 14107764 -37405820 + AT_rich Low_complexity Low_complexity 1 27 0 585 290 22 31 chrY 14107858 14108082 -37405502 + L1M4 LINE L1 24 245 -6297 1280 214 50 8 chrY 14108212 14108571 -37405013 + L1MB7 LINE L1 5790 6163 -21 771 177 14 7 chrY 14108627 14108768 -37404816 + FLAM_C SINE Alu 1 142 -1 666 209 177 0 chrY 14108790 14108948 -37404636 + AluSq SINE Alu 2 187 -126 813 234 0 71 chrY 14108979 14109205 -37404379 + AluJo SINE Alu 85 294 -18 265 299 58 11 chrY 14109569 14109656 -37403928 + L2 LINE L2 3151 3241 -31 3467 155 29 18 chrY 14109793 14110452 -37403132 + L1MC1 LINE L1 5649 6314 -19 2139 153 3 40 chrY 14110809 14111187 -37402397 + THE1B LTR MaLR 1 364 0 10432 138 5 0 chrY 14111188 14112759 -37400825 + THE1B-int LTR MaLR 2 1580 0 1804 193 28 25 chrY 14112759 14113122 -37400462 + THE1B LTR MaLR 1 364 0 677 279 35 4 chrY 14115077 14115306 -37398278 - MLT1E1 LTR MaLR 0 654 419 1250 197 26 45 chrY 14115335 14115599 -37397985 - AluJb SINE Alu -18 294 36 404 246 203 0 chrY 14115621 14115759 -37397825 - MLT1E1 LTR MaLR -337 289 124 255 165 0 18 chrY 14115869 14115939 -37397645 - MLT1E1 LTR MaLR -463 191 52 1067 209 9 5 chrY 14116134 14116349 -37397235 + AluJo SINE Alu 84 299 -13 363 263 63 0 chrY 14116362 14116457 -37397127 - MLT1J LTR MaLR -341 170 70 231 296 0 0 chrY 14116804 14116875 -37396709 + (TG)n Simple_repeat Simple_repeat 2 72 0 1401 207 25 25 chrY 14117053 14117333 -37396251 + AluJo SINE Alu 11 290 -22 340 314 71 0 chrY 14118389 14118529 -37395055 - MIR SINE MIR -5 257 108 655 248 27 13 chrY 14119195 14119344 -37394240 + FRAM SINE Alu 2 152 -14 5460 216 25 74 chrY 14119557 14121021 -37392563 - MER52A LTR ERV1 0 1755 384 1626 208 21 44 chrY 14121025 14121432 -37392152 + THE1B LTR MaLR 1 423 -5 743 245 0 69 chrY 14121429 14121662 -37391922 - MER52A LTR ERV1 -1538 217 1 * 1585 215 16 3 chrY 14121892 14122199 -37391385 - AluJo SINE Alu -1 311 1 2141 179 39 52 chrY 14122688 14122901 -37390683 - L1PA16 LINE L1 -21 6145 5931 1547 213 21 0 chrY 14122901 14123183 -37390401 - AluSx SINE Alu -24 288 1 2141 179 39 52 chrY 14123183 14123484 -37390100 - L1PA16 LINE L1 -235 5931 5638 2035 248 37 35 chrY 14124358 14124983 -37388601 - MLT1E2 LTR MaLR 0 626 1 812 288 57 42 chrY 14125434 14125951 -37387633 - MLT1E LTR MaLR 0 593 21 3658 231 107 21 chrY 14126313 14127545 -37386039 - Charlie1a DNA MER1_type -1308 1453 99 225 0 0 0 chrY 14127545 14127570 -37386014 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3658 231 107 21 chrY 14127570 14127650 -37385934 - Charlie1a DNA MER1_type -2662 99 27 7482 35 0 0 chrY 14127720 14128836 -37384748 - L1PA3 LINE L1 0 6155 5040 1065 16 0 0 chrY 14128837 14128965 -37384619 + L1PA3 LINE L1 4903 5030 -1116 225 277 186 23 chrY 14129925 14130113 -37383471 + MIR SINE MIR 25 247 -15 1638 227 0 6 chrY 14130177 14130490 -37383094 - AluJb SINE Alu -1 311 1 463 225 78 23 chrY 14130706 14130835 -37382749 - Charlie1a DNA MER1_type -1244 211 76 1913 142 7 23 chrY 14131477 14131779 -37381805 - AluSq SINE Alu -16 297 1 1517 93 0 9 chrY 14134165 14134380 -37379204 - L1PA5 LINE L1 -5 6149 5937 1585 199 0 21 chrY 14134905 14135196 -37378388 + AluJb SINE Alu 1 285 -27 279 0 0 0 chrY 14135198 14135229 -37378355 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 453 299 143 13 chrY 14135808 14136032 -37377552 + MIR SINE MIR 7 259 -3 228 316 0 13 chrY 14136612 14136688 -37376896 + GA-rich Low_complexity Low_complexity 5 79 0 316 196 0 0 chrY 14138767 14138818 -37374766 + L2 LINE L2 3252 3302 -11 198 71 0 0 chrY 14138819 14138847 -37374737 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 768 217 0 72 chrY 14139244 14139451 -37374133 + MLT1D LTR MaLR 1 192 -313 507 190 25 16 chrY 14139452 14139573 -37374011 + MLT1D LTR MaLR 384 505 0 1954 99 51 20 chrY 14140645 14140939 -37372645 - AluY SINE Alu -8 303 1 2300 52 0 0 chrY 14141156 14141470 -37372114 + AluY SINE Alu 13 326 0 1046 232 121 11 chrY 14141577 14141849 -37371735 - AluJb SINE Alu 0 302 1 269 116 0 0 chrY 14142650 14142693 -37370891 + L1PA7 LINE L1 6102 6144 -10 347 382 8 29 chrY 14143093 14143331 -37370253 + MIR SINE MIR 29 261 -1 235 281 16 108 chrY 14143466 14143606 -37369978 + LTR33 LTR ERVL 20 141 -380 2834 183 47 10 chrY 14143606 14144184 -37369400 - LTR26 LTR ERV1 0 603 5 235 281 16 108 chrY 14144184 14144228 -37369356 + LTR33 LTR ERVL 141 187 -334 1132 172 13 0 chrY 14144576 14144808 -37368776 + L1MA7 LINE L1 6051 6285 -6 1584 183 66 0 chrY 14144956 14145230 -37368354 - AluSx SINE Alu -12 300 9 24 32 0 0 chrY 14145280 14145311 -37368273 + AT_rich Low_complexity Low_complexity 1 31 0 1155 238 44 11 chrY 14145314 14145587 -37367997 - AluJo SINE Alu -30 282 1 16709 137 17 2 chrY 14145812 14150194 -37363390 - L1PA7 LINE L1 -7 6147 1703 1493 104 284 190 chrY 14150194 14150725 -37362859 + LTR12 LTR ERV1 1 581 -133 1644 141 4 0 chrY 14150725 14150994 -37362590 - L1PA7 LINE L1 -4440 1706 1437 352 300 18 9 chrY 14152421 14152531 -37361053 - MLT1E LTR MaLR -142 451 341 1574 188 35 14 chrY 14152613 14152989 -37360595 - AluJo SINE Alu 0 382 1 24 32 0 0 chrY 14153440 14153471 -37360113 + AT_rich Low_complexity Low_complexity 1 31 0 225 287 32 11 chrY 14153719 14153813 -37359771 - L1M4 LINE L1 -2310 3836 3741 6156 84 7 21 chrY 14153833 14154739 -37358845 - L1PA7 LINE L1 0 6154 5262 * 8094 145 1 13 chrY 14154737 14155401 -37358183 - L1P LINE L1 -2425 3721 3051 7231 43 7 0 chrY 14155401 14157053 -37356531 - L1PA3 LINE L1 0 6155 4497 8094 145 1 13 chrY 14157053 14157797 -37355787 - L1P LINE L1 -3095 3051 2329 9964 139 6 44 chrY 14157798 14160286 -37353298 + L1PA7 LINE L1 3711 6152 -2 2012 177 14 27 chrY 14160685 14161053 -37352531 + THE1B LTR MaLR 1 363 -1 1361 181 67 11 chrY 14161426 14161541 -37352043 + AluJo SINE Alu 5 112 -200 261 0 0 0 chrY 14161541 14161570 -37352014 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1361 181 67 11 chrY 14161570 14161724 -37351860 + AluJo SINE Alu 112 289 -23 216 192 269 0 chrY 14162140 14162218 -37351366 - MER5A DNA MER1_type -87 102 4 946 243 146 73 chrY 14162750 14163236 -37350348 + MLT1E2 LTR MaLR 1 624 -2 1831 162 7 0 chrY 14163240 14163536 -37350048 + AluSq SINE Alu 1 298 -15 1601 199 0 7 chrY 14164254 14164556 -37349028 - AluJo SINE Alu -8 304 5 474 105 39 50 chrY 14164954 14165135 -37348449 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 350 42 21 0 chrY 14165192 14165240 -37348344 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1199 40 29 6 chrY 14165240 14165273 -37348311 + (TTTC)n Simple_repeat Simple_repeat 1 210 0 1199 40 29 6 chrY 14165273 14165446 -37348138 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 372 253 149 36 chrY 14165489 14165683 -37347901 + L2 LINE L2 3096 3311 -2 2026 175 8 3 chrY 14165798 14166153 -37347431 + MLT1A1 LTR MaLR 4 360 -5 7982 107 7 6 chrY 14166496 14167714 -37345870 - L1P LINE L1 -2542 3604 2386 11398 117 45 10 chrY 14167738 14170232 -37343352 + L1PA6 LINE L1 3617 6151 -3 325 264 58 16 chrY 14172580 14172701 -37340883 + MLT1I LTR MaLR 278 403 -6 336 143 0 0 chrY 14173296 14173352 -37340232 + (A)n Simple_repeat Simple_repeat 1 56 0 26 30 0 0 chrY 14173964 14173997 -37339587 + AT_rich Low_complexity Low_complexity 1 33 0 1582 211 7 0 chrY 14174268 14174566 -37339018 - AluJo SINE Alu -12 300 1 3072 68 2 113 chrY 14175226 14175730 -37337854 - LTR7 LTR ERV1 -2 448 1 282 29 0 0 chrY 14176653 14176688 -37336896 + (TG)n Simple_repeat Simple_repeat 1 35 0 1538 169 60 58 chrY 14176826 14177216 -37336368 + MLT1B LTR MaLR 1 365 0 990 189 57 0 chrY 14177222 14177434 -37336150 + MLT1B LTR MaLR 167 390 0 1935 244 70 21 chrY 14177611 14178193 -37335391 + MLT1E2 LTR MaLR 14 624 -2 438 224 17 35 chrY 14178261 14178377 -37335207 + MER5A DNA MER1_type 13 126 -63 4627 163 44 14 chrY 14178496 14179408 -37334176 + L1MA5A LINE L1 5353 6291 -6 1799 163 7 0 chrY 14179495 14179789 -37333795 - AluSx SINE Alu -6 306 11 986 259 84 19 chrY 14181120 14181549 -37332035 + L1ME LINE L1 5264 5720 -450 1903 168 3 0 chrY 14182131 14182429 -37331155 + AluSx SINE Alu 1 299 -13 24 0 0 0 chrY 14183083 14183107 -37330477 + AT_rich Low_complexity Low_complexity 1 24 0 4445 66 3 0 chrY 14183146 14183724 -37329860 - L1P LINE L1 -1839 4307 3728 6542 66 27 1 chrY 14183724 14184834 -37328750 + L1PA5 LINE L1 5022 6154 0 443 117 53 23 chrY 14185560 14185731 -37327853 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 442 328 47 13 chrY 14186064 14186370 -37327214 - L1ME3A LINE L1 -306 5864 5539 571 158 0 0 chrY 14186438 14186533 -37327051 - FLAM_C SINE Alu -12 131 37 284 267 32 1 chrY 14186533 14186667 -37326917 - L1M1 LINE L1 -864 5441 5299 252 0 0 0 chrY 14186917 14186945 -37326639 + (GA)n Simple_repeat Simple_repeat 1 28 0 688 213 0 59 chrY 14186946 14187115 -37326469 - AluJo SINE Alu -33 279 121 315 0 0 0 chrY 14187193 14187228 -37326356 + (TA)n Simple_repeat Simple_repeat 1 35 0 1390 249 75 29 chrY 14188046 14188471 -37325113 + MLT2B2 LTR ERVL 10 461 -54 569 43 34 43 chrY 14188471 14188588 -37324996 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 1390 249 75 29 chrY 14188588 14188644 -37324940 + MLT2B2 LTR ERVL 461 513 -2 23 0 0 0 chrY 14189090 14189113 -37324471 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrY 14189505 14189526 -37324058 + AT_rich Low_complexity Low_complexity 1 21 0 914 219 18 55 chrY 14190064 14190283 -37323301 + MER58A DNA MER1_type 14 224 0 25 0 0 0 chrY 14190589 14190614 -37322970 + AT_rich Low_complexity Low_complexity 1 25 0 221 219 0 0 chrY 14191033 14191106 -37322478 + (TG)n Simple_repeat Simple_repeat 1 73 0 733 237 17 0 chrY 14191548 14191721 -37321863 + MER20 DNA MER1_type 43 218 -1 1599 180 10 17 chrY 14192834 14193129 -37320455 + AluSx SINE Alu 3 295 -17 212 279 23 0 chrY 14193143 14193229 -37320355 + A-rich Low_complexity Low_complexity 2 89 0 8906 149 60 18 chrY 14193322 14195044 -37318540 - L1P LINE L1 -2514 3632 1839 6709 61 0 0 chrY 14195044 14195972 -37317612 - L1PA4 LINE L1 -6 6149 5232 33634 69 4 4 chrY 14196002 14202162 -37311422 + L1PA4 LINE L1 2 6154 -1 2097 129 7 0 chrY 14202332 14202634 -37310950 - AluSx SINE Alu -8 304 1 1257 134 0 0 chrY 14203013 14203214 -37310370 - L1P4 LINE L1 -343 5818 5618 1879 163 7 0 chrY 14203490 14203775 -37309809 + AluSx SINE Alu 1 290 -22 294 29 0 0 chrY 14203775 14203810 -37309774 + (CA)n Simple_repeat Simple_repeat 2 36 0 542 238 131 81 chrY 14203915 14204318 -37309266 + LTR30 LTR ERV1 110 596 0 626 143 0 9 chrY 14205215 14205320 -37308264 + MER4E LTR ERV1 1 104 -662 40860 51 23 2 chrY 14205331 14211354 -37302230 - L1PA3 LINE L1 0 6155 3 3702 150 19 67 chrY 14211354 14212076 -37301508 + MER4E LTR ERV1 92 779 0 465 34 0 0 chrY 14212454 14212513 -37301071 + (CA)n Simple_repeat Simple_repeat 2 60 0 2432 106 34 0 chrY 14212665 14213022 -37300562 - MER4E LTR ERV1 0 766 398 740 299 4 4 chrY 14213018 14213249 -37300335 + MER89 LTR ERV1 184 414 -145 * 1430 249 100 42 chrY 14213231 14213870 -37299714 - MER50 LTR ERV1 -49 685 10 602 187 53 73 chrY 14213878 14214028 -37299556 + MER89 LTR ERV1 413 559 0 2660 27 0 0 chrY 14214221 14214520 -37299064 - AluYa5 SINE Alu -12 299 1 1056 254 14 35 chrY 14215778 14216062 -37297522 - L1PA16 LINE L1 -33 6133 5856 3435 256 60 52 chrY 14216562 14217975 -37295609 + Charlie1a DNA MER1_type 14 1437 -18 1610 93 0 0 chrY 14218600 14218825 -37294759 - L1PA4 LINE L1 0 6155 5931 7266 53 0 4 chrY 14219753 14220942 -37292642 - L1PA4 LINE L1 -504 5651 4468 3924 57 8 10 chrY 14220942 14221449 -37292135 + L1PA4 LINE L1 5639 6147 -8 383 183 0 0 chrY 14221856 14221927 -37291657 - MADE1 DNA Mariner 0 80 10 195 100 0 0 chrY 14222143 14222173 -37291411 + (CA)n Simple_repeat Simple_repeat 2 31 0 327 281 70 23 chrY 14222269 14222397 -37291187 + L1M4 LINE L1 3333 3466 -2680 510 264 52 23 chrY 14222519 14222693 -37290891 + MER5A DNA MER1_type 11 189 0 318 309 36 19 chrY 14222788 14223095 -37290489 + L1M4 LINE L1 3689 4000 -2146 21 36 0 0 chrY 14223468 14223496 -37290088 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chrY 14223574 14223603 -37289981 + AT_rich Low_complexity Low_complexity 1 29 0 962 141 0 0 chrY 14224432 14224595 -37288989 + AluY SINE Alu 143 305 -6 191 88 29 0 chrY 14224773 14224807 -37288777 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 2157 126 22 34 chrY 14225001 14225359 -37288225 + HERV9 LTR ERV1 7679 8032 -367 38286 89 6 2 chrY 14225359 14231487 -37282097 - L1PA5 LINE L1 -2 6152 2 2139 180 3 3 chrY 14231489 14231862 -37281722 + HERV9 LTR ERV1 8027 8399 0 242 186 0 0 chrY 14231862 14231905 -37281679 + LTR30 LTR ERV1 1 43 -679 648 153 151 78 chrY 14231905 14232099 -37281485 + LTR12 LTR ERV1 44 1860 -480 318 248 29 19 chrY 14232184 14232289 -37281295 + LTR30 LTR ERV1 548 653 -69 593 130 0 0 chrY 14232289 14232381 -37281203 + LTR12 LTR ERV1 623 714 0 204 40 0 0 chrY 14233079 14233104 -37280480 + (T)n Simple_repeat Simple_repeat 1 25 0 206 234 0 0 chrY 14233450 14233497 -37280087 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 201 39 0 0 chrY 14233666 14233692 -37279892 + (TG)n Simple_repeat Simple_repeat 1 26 0 1768 158 14 0 chrY 14233692 14233984 -37279600 - AluSx SINE Alu -16 296 1 993 251 48 19 chrY 14234131 14234442 -37279142 - MER7A DNA MER2_type -22 324 7 1507 167 25 0 chrY 14234513 14234792 -37278792 - AluSq SINE Alu 0 325 41 1193 227 4 29 chrY 14235077 14235394 -37278190 + AluJb SINE Alu 20 329 0 463 326 114 42 chrY 14235487 14236173 -37277411 - L1 LINE L1 -1334 4812 4078 330 318 7 47 chrY 14236168 14236248 -37277336 - L1 LINE L1 -2323 3823 3750 * 1894 168 0 13 chrY 14236248 14236564 -37277020 + AluSx SINE Alu 1 312 0 330 318 7 47 chrY 14236564 14236631 -37276953 - L1 LINE L1 -2396 3750 3682 305 315 61 17 chrY 14236634 14236929 -37276655 - Charlie2 DNA MER1_type -62 2800 2493 21 0 0 0 chrY 14236935 14236956 -37276628 + AT_rich Low_complexity Low_complexity 1 21 0 1000 220 99 76 chrY 14237923 14238345 -37275239 + L1MD3 LINE L1 7329 7934 -48 568 260 100 66 chrY 14238450 14238831 -37274753 + L1M4 LINE L1 2772 3165 -2981 359 363 71 0 chrY 14239824 14239992 -37273592 + L3b LINE CR1 1228 1407 -176 301 195 24 0 chrY 14240752 14240834 -37272750 + (CTTAA)n Simple_repeat Simple_repeat 1 84 0 293 68 23 0 chrY 14241214 14241258 -37272326 + (CA)n Simple_repeat Simple_repeat 2 46 0 955 159 21 51 chrY 14241369 14241610 -37271974 + L1MA8 LINE L1 5473 5693 -481 2959 163 48 10 chrY 14241716 14242304 -37271280 + L1MA8 LINE L1 5676 6285 -6 410 306 102 43 chrY 14243401 14243656 -37269928 - LTR16C LTR ERVL -28 463 194 738 123 18 0 chrY 14243769 14243883 -37269701 - FRAM SINE Alu -13 163 48 185 287 81 11 chrY 14245628 14245715 -37267869 - L2 LINE L2 -1370 1944 1852 23 86 0 0 chrY 14245804 14245862 -37267722 + AT_rich Low_complexity Low_complexity 1 58 0 647 234 25 18 chrY 14246319 14246493 -37267091 + MER58B DNA MER1_type 167 341 0 2167 110 0 28 chrY 14247246 14247563 -37266021 - AluY SINE Alu -3 308 1 1556 184 44 0 chrY 14247579 14247850 -37265734 - AluSx SINE Alu 0 312 30 653 291 80 23 chrY 14247857 14248208 -37265376 + L1ME3A LINE L1 5545 5915 -255 320 207 0 0 chrY 14248222 14248280 -37265304 - AluS SINE Alu -250 58 1 297 240 8 16 chrY 14249175 14249300 -37264284 + CT-rich Low_complexity Low_complexity 1 124 0 26 0 0 0 chrY 14249301 14249327 -37264257 + AT_rich Low_complexity Low_complexity 1 26 0 322 332 110 67 chrY 14249470 14249816 -37263768 + L3b LINE CR1 1190 1550 -33 1697 173 92 15 chrY 14250332 14250668 -37262916 - THE1B LTR MaLR -2 362 1 2897 198 110 7 chrY 14250723 14251434 -37262150 - L1MC3 LINE L1 -1 7784 7001 744 158 144 22 chrY 14252668 14252807 -37260777 - AluJb SINE Alu -23 289 134 1044 92 0 0 chrY 14253742 14253872 -37259712 - AluSq/x SINE Alu -182 130 1 6032 141 32 11 chrY 14254060 14255124 -37258460 + HERVH LTR ERV1 1150 2235 -6164 417 116 159 0 chrY 14255135 14255204 -37258380 + HERVH LTR ERV1 5740 5819 -1894 2145 135 10 15 chrY 14255204 14255596 -37257988 + HERVH LTR ERV1 7324 7713 0 2757 111 7 9 chrY 14255596 14256039 -37257545 + LTR7 LTR ERV1 1 442 -8 441 249 96 56 chrY 14256125 14256176 -37257408 + MER20 DNA MER1_type 13 60 -159 5539 166 16 14 chrY 14256176 14257143 -37256441 - LTR5 LTR ERVK 0 969 1 441 249 96 56 chrY 14257143 14257267 -37256317 + MER20 DNA MER1_type 60 199 -20 3762 134 14 16 chrY 14257267 14257903 -37255681 - MER41B LTR ERV1 0 635 1 441 249 96 56 chrY 14257903 14257923 -37255661 + MER20 DNA MER1_type 199 217 -2 181 305 17 0 chrY 14258901 14258960 -37254624 + MIR SINE MIR 64 123 -139 21 71 0 0 chrY 14259205 14259247 -37254337 + AT_rich Low_complexity Low_complexity 1 42 0 1594 219 91 16 chrY 14259276 14259718 -37253866 - MLT2B2 LTR ERVL -40 475 1 1760 185 14 0 chrY 14260849 14261146 -37252438 - AluSx SINE Alu -11 301 1 1560 209 3 0 chrY 14261724 14262041 -37251543 - AluSx SINE Alu 0 318 1 182 345 36 24 chrY 14262162 14262246 -37251338 + L2 LINE L2 2228 2312 -1002 28 29 0 0 chrY 14263819 14263854 -37249730 + AT_rich Low_complexity Low_complexity 1 35 0 517 192 0 89 chrY 14264089 14264235 -37249349 + FLAM_A SINE Alu 1 133 0 216 337 99 25 chrY 14264340 14264542 -37249042 - MIR SINE MIR -10 252 36 1658 176 18 4 chrY 14265022 14265301 -37248283 + AluSx SINE Alu 6 288 -24 1697 172 23 23 chrY 14265374 14265722 -37247862 - MLT1B LTR MaLR -42 348 1 189 0 0 0 chrY 14266305 14266326 -37247258 + (T)n Simple_repeat Simple_repeat 1 21 0 2558 121 14 75 chrY 14267025 14267529 -37246055 + L1PA10 LINE L1 5695 6167 -1 210 71 0 0 chrY 14269186 14269214 -37244370 + (TTA)n Simple_repeat Simple_repeat 3 30 0 36511 54 4 5 chrY 14269214 14274887 -37238697 - L1PA3 LINE L1 -18 6137 473 225 159 0 0 chrY 14275179 14275223 -37238361 + T-rich Low_complexity Low_complexity 1 44 0 563 208 0 0 chrY 14275780 14275881 -37237703 - AluJ/FLAM SINE Alu -211 101 1 451 287 17 22 chrY 14275892 14276073 -37237511 + CT-rich Low_complexity Low_complexity 1 180 0 1191 263 93 23 chrY 14277180 14277652 -37235932 + MLT1D LTR MaLR 1 505 0 356 169 14 0 chrY 14280255 14280326 -37233258 - MADE1 DNA Mariner 0 80 9 301 287 83 9 chrY 14280499 14280607 -37232977 + L2 LINE L2 3189 3304 -9 393 302 68 21 chrY 14280626 14280730 -37232854 + MER3 DNA MER1_type 9 107 -102 2141 152 16 16 chrY 14280730 14281105 -37232479 - THE1C LTR MaLR 0 375 1 393 302 68 21 chrY 14281105 14281192 -37232392 + MER3 DNA MER1_type 107 209 0 1151 241 0 19 chrY 14281561 14281831 -37231753 - AluJo SINE Alu -6 306 42 21 0 0 0 chrY 14282180 14282201 -37231383 + AT_rich Low_complexity Low_complexity 1 21 0 218 305 0 0 chrY 14282317 14282376 -37231208 + GA-rich Low_complexity Low_complexity 2 60 0 3407 80 2 5 chrY 14282733 14283182 -37230402 - LTR7 LTR ERV1 -2 448 1 332 43 0 21 chrY 14283435 14283482 -37230102 + (TAA)n Simple_repeat Simple_repeat 2 47 0 669 243 55 45 chrY 14283624 14283811 -37229773 + MER33 DNA MER1_type 5 198 -2387 2094 190 28 16 chrY 14283811 14284238 -37229346 - Tigger2a DNA MER2_type -1 433 2 669 243 55 45 chrY 14284238 14284359 -37229225 + MER33 DNA MER1_type 198 316 -8 1273 200 86 21 chrY 14284395 14284675 -37228909 + AluJo SINE Alu 1 298 -14 331 250 33 0 chrY 14285327 14285419 -37228165 + L1MC4 LINE L1 6611 6705 -1337 21 57 0 0 chrY 14285419 14285454 -37228130 + AT_rich Low_complexity Low_complexity 1 35 0 261 169 42 0 chrY 14285549 14285620 -37227964 + (TA)n Simple_repeat Simple_repeat 2 75 0 386 96 32 48 chrY 14285622 14285747 -37227837 + (TATAA)n Simple_repeat Simple_repeat 2 124 0 35 0 0 0 chrY 14285748 14285783 -37227801 + AT_rich Low_complexity Low_complexity 1 35 0 1743 182 13 3 chrY 14286073 14286380 -37227204 + AluSx SINE Alu 3 312 0 1481 216 138 35 chrY 14286569 14286892 -37226692 + MLT1D LTR MaLR 1 386 -119 3374 156 21 8 chrY 14286892 14287262 -37226322 + L1PA16 LINE L1 5535 5918 -248 2121 158 14 8 chrY 14287262 14287624 -37225960 + THE1B LTR MaLR 1 364 0 3374 156 21 8 chrY 14287624 14287875 -37225709 + L1PA16 LINE L1 5918 6164 -2 1481 216 138 35 chrY 14287875 14288009 -37225575 + MLT1D LTR MaLR 386 505 0 480 329 7 0 chrY 14288097 14288246 -37225338 - MER63A DNA MER1_type -3 207 58 396 303 27 1 chrY 14289220 14289351 -37224233 + MER63 DNA MER1_type 677 1663 -25 3784 173 32 32 chrY 14289431 14290306 -37223278 + L1PB4 LINE L1 5270 6144 -12 294 73 0 0 chrY 14290977 14291018 -37222566 + (A)n Simple_repeat Simple_repeat 1 41 0 2704 45 0 0 chrY 14291790 14292101 -37221483 + AluY SINE Alu 1 311 0 377 299 0 28 chrY 14293044 14293188 -37220396 - MER20 DNA MER1_type -64 155 16 1668 163 56 31 chrY 14293447 14293802 -37219782 + THE1B LTR MaLR 1 364 0 1815 174 7 0 chrY 14294094 14294399 -37219185 + AluSx SINE Alu 1 307 -5 2124 119 6 6 chrY 14294448 14294759 -37218825 + AluY SINE Alu 1 311 0 1072 76 44 0 chrY 14294759 14294968 -37218616 + GA-rich Low_complexity Low_complexity 1 218 0 250 143 82 0 chrY 14295509 14295558 -37218026 - LTR16A1 LTR ERVL 0 457 405 240 311 8 50 chrY 14295570 14295689 -37217895 - MIR SINE MIR 0 262 149 1734 202 20 5 chrY 14295699 14296100 -37217484 - L1PB4 LINE L1 -4 6152 5746 2147 117 0 26 chrY 14296332 14296639 -37216945 - AluSp SINE Alu -14 299 1 21 0 0 0 chrY 14296806 14296827 -37216757 + AT_rich Low_complexity Low_complexity 1 21 0 280 100 357 0 chrY 14296984 14297054 -37216530 + MER58 DNA MER1_type 168 262 -79 230 295 95 29 chrY 14297178 14297283 -37216301 - MIR SINE MIR -63 145 34 1936 159 10 0 chrY 14297386 14297694 -37215890 + AluY SINE Alu 1 311 0 1180 193 0 113 chrY 14298416 14298742 -37214842 + AluJo SINE Alu 1 289 -13 15513 149 28 32 chrY 14298848 14305345 -37208239 + L1PA8 LINE L1 8 6487 0 1295 236 119 85 chrY 14306150 14306870 -37206714 - LTR1B LTR ERV1 -81 745 1 1481 225 0 20 chrY 14307774 14308076 -37205508 + AluJb SINE Alu 1 296 -16 187 319 114 24 chrY 14308524 14308690 -37204894 - MIR SINE MIR -30 232 52 275 303 0 40 chrY 14309350 14309449 -37204135 - L2 LINE L2 -4 3309 3215 877 218 5 15 chrY 14310650 14310847 -37202737 - MER58A DNA MER1_type -3 221 27 195 42 0 0 chrY 14310956 14310980 -37202604 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1399 186 56 11 chrY 14311091 14311389 -37202195 - AluSx SINE Alu 0 310 1 1411 192 4 25 chrY 14311613 14311894 -37201690 + AluJo SINE Alu 5 279 -33 408 40 0 0 chrY 14311898 14311948 -37201636 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2166 134 3 3 chrY 14313234 14313547 -37200037 - AluSq SINE Alu 0 313 1 21 36 0 0 chrY 14314296 14314324 -37199260 + AT_rich Low_complexity Low_complexity 1 28 0 378 291 0 0 chrY 14315263 14315435 -37198149 + (TA)n Simple_repeat Simple_repeat 2 173 0 332 284 40 80 chrY 14315679 14316028 -37197556 + L1MC4 LINE L1 7530 7864 -178 309 61 61 31 chrY 14316055 14316153 -37197431 + (TA)n Simple_repeat Simple_repeat 2 102 0 323 245 7 42 chrY 14316220 14316363 -37197221 + L1MC4 LINE L1 7905 8042 0 301 247 25 0 chrY 14316576 14316657 -37196927 - MARNA DNA Mariner -237 349 267 913 219 5 0 chrY 14317015 14317234 -37196350 - L1MA5A LINE L1 -23 6274 6055 180 0 0 0 chrY 14317765 14317785 -37195799 + (T)n Simple_repeat Simple_repeat 1 20 0 2225 103 3 7 chrY 14317999 14318355 -37195229 - AluY SINE Alu 0 355 1 1218 220 70 26 chrY 14318625 14319053 -37194531 + L1MB7 LINE L1 5734 6180 -4 211 298 0 0 chrY 14319809 14319856 -37193728 + (TATG)n Simple_repeat Simple_repeat 4 50 0 301 206 0 0 chrY 14320200 14320273 -37193311 - L1PA16 LINE L1 -3 6163 6091 938 269 136 34 chrY 14320380 14320908 -37192676 + MLT1E LTR MaLR 1 582 -11 1225 230 52 52 chrY 14320911 14321198 -37192386 + AluJo SINE Alu 3 289 -13 1454 202 40 4 chrY 14321663 14321940 -37191644 + AluJb SINE Alu 1 287 -25 486 0 0 0 chrY 14321955 14322009 -37191575 + (TA)n Simple_repeat Simple_repeat 2 55 0 793 139 17 17 chrY 14322144 14322324 -37191260 + GA-rich Low_complexity Low_complexity 1 180 0 225 0 0 0 chrY 14322429 14322454 -37191130 + (T)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chrY 14322573 14322597 -37190987 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 243 0 0 0 chrY 14322596 14322623 -37190961 + (CA)n Simple_repeat Simple_repeat 1 27 0 798 222 164 106 chrY 14322733 14323430 -37190154 - LTR1B LTR ERV1 -89 737 1 182 259 19 19 chrY 14323668 14323722 -37189862 + MIR SINE MIR 23 76 -132 2315 96 13 19 chrY 14323748 14324061 -37189523 - AluY SINE Alu 0 311 1 7163 55 12 0 chrY 14324617 14325702 -37187882 - L1PA3 LINE L1 -1 6154 5066 11559 42 1 1 chrY 14325702 14327184 -37186400 + L1PA3 LINE L1 3585 5066 -1080 1244 195 34 38 chrY 14327186 14327453 -37186131 - AluJo SINE Alu -17 295 30 495 209 0 0 chrY 14327513 14327623 -37185961 - L1MB1 LINE L1 -40 6128 6019 566 273 138 73 chrY 14328044 14328550 -37185034 - MLT1E2 LTR MaLR -8 618 80 456 171 34 17 chrY 14328934 14329051 -37184533 + MER4C LTR ERV1 1 119 -346 532 176 29 120 chrY 14329129 14329396 -37184188 + LTR59 LTR ERV1 136 375 -222 504 202 45 160 chrY 14329366 14329703 -37183881 + MER4C LTR ERV1 165 462 -3 * 192 316 20 31 chrY 14329783 14329881 -37183703 + L2 LINE L2 2995 3091 -181 180 303 15 45 chrY 14329969 14330035 -37183549 + L2 LINE L2 3241 3304 -9 273 303 0 0 chrY 14330797 14330896 -37182688 - MLT1E2 LTR MaLR -8 618 520 * 561 240 2 40 chrY 14330881 14331104 -37182480 + AluJ SINE Alu 81 260 -52 822 239 15 61 chrY 14331206 14331385 -37182199 - MLT1E2 LTR MaLR -374 252 87 1624 163 14 88 chrY 14331385 14331803 -37181781 - MLT1B LTR MaLR -1 389 3 822 239 15 61 chrY 14331803 14331887 -37181697 - MLT1E2 LTR MaLR -539 87 1 1769 171 31 3 chrY 14332096 14332388 -37181196 - AluSx SINE Alu -12 300 1 22 80 0 0 chrY 14332447 14332497 -37181087 + AT_rich Low_complexity Low_complexity 1 50 0 471 205 82 82 chrY 14332530 14332725 -37180859 - MER3 DNA MER1_type -5 204 10 10628 136 9 26 chrY 14334394 14336359 -37177225 + L1PA7 LINE L1 8 1943 -4518 * 19363 125 14 2 chrY 14336354 14340379 -37173205 + L1PA7 LINE L1 2381 6456 -13 664 228 7 7 chrY 14340406 14340555 -37173029 - MER58A DNA MER1_type -32 192 44 2453 202 94 65 chrY 14340588 14341394 -37172190 - MER21B LTR ERV1 -19 844 15 2635 132 51 6 chrY 14342304 14342767 -37170817 + L1PA11 LINE L1 5670 6153 -21 257 0 30 0 chrY 14342780 14342813 -37170771 + (CAA)n Simple_repeat Simple_repeat 2 35 0 970 199 167 9 chrY 14343738 14343959 -37169625 - AluJo SINE Alu -14 298 43 606 237 160 0 chrY 14344017 14344173 -37169411 - AluJo SINE Alu -82 230 50 496 252 0 9 chrY 14344213 14344320 -37169264 - FLAM_A SINE Alu -27 115 10 873 184 168 0 chrY 14344352 14344531 -37169053 - AluJo SINE Alu -92 220 12 201 324 14 27 chrY 14344994 14345068 -37168516 - MIR SINE MIR -73 189 117 1506 201 3 14 chrY 14345126 14345409 -37168175 + AluJo SINE Alu 9 288 -24 31 0 0 0 chrY 14345488 14345519 -37168065 + AT_rich Low_complexity Low_complexity 1 31 0 398 277 26 45 chrY 14345573 14345728 -37167856 + MIR SINE MIR 54 205 -57 1587 166 87 16 chrY 14346591 14346959 -37166625 + L1MC1 LINE L1 5934 6327 -6 344 176 0 0 chrY 14346959 14347027 -37166557 + MER58 DNA MER1_type 141 208 -2212 956 307 75 25 chrY 14347603 14347715 -37165869 + MLT2F LTR ERVL 6 111 -552 3491 186 66 14 chrY 14347715 14348456 -37165128 + LTR39 LTR ERV1 4 783 0 956 307 75 25 chrY 14348456 14348780 -37164804 + MLT2F LTR ERVL 111 464 -199 2484 131 78 7 chrY 14348823 14349257 -37164327 + MER4C LTR ERV1 1 465 0 1301 230 69 74 chrY 14349791 14350430 -37163154 - MER92B LTR ERV1 0 636 1 216 288 38 12 chrY 14350656 14350736 -37162848 - MIR SINE MIR -92 170 89 815 152 0 0 chrY 14352928 14353060 -37160524 - L1PA7 LINE L1 -1 6153 6022 1022 90 0 0 chrY 14353061 14353206 -37160378 + L1PA7 LINE L1 5806 5950 -204 547 141 11 0 chrY 14353201 14353293 -37160291 - L1PA7 LINE L1 -132 6022 5930 * 262 330 121 11 chrY 14354257 14354439 -37159145 - MIR SINE MIR -43 219 18 1185 253 75 0 chrY 14354747 14355083 -37158501 - AluJo SINE Alu 0 357 1 512 223 8 8 chrY 14355462 14355583 -37158001 + MER7A DNA MER2_type 12 130 -216 1250 216 41 0 chrY 14355625 14355894 -37157690 + MER7A DNA MER2_type 67 344 -2 3095 158 24 9 chrY 14356106 14356651 -37156933 + LTR24B LTR ERV1 4 556 -20 370 216 27 0 chrY 14356659 14356733 -37156851 + MLT1D LTR MaLR 13 88 -417 1366 242 18 26 chrY 14357015 14357399 -37156185 + MLT1D LTR MaLR 118 498 -7 238 289 24 24 chrY 14357752 14357835 -37155749 + MER5A DNA MER1_type 23 105 -84 310 229 0 49 chrY 14357905 14358047 -37155537 - MER5B DNA MER1_type -1 177 1 21 36 0 0 chrY 14358378 14358406 -37155178 + AT_rich Low_complexity Low_complexity 1 28 0 825 185 0 0 chrY 14359689 14359867 -37153717 + (ATG)n Simple_repeat Simple_repeat 1 178 0 575 216 6 0 chrY 14359884 14360046 -37153538 + (ATG)n Simple_repeat Simple_repeat 1 163 0 1771 203 70 7 chrY 14360390 14360704 -37152880 + L1MA9 LINE L1 5825 6175 -137 228 67 0 0 chrY 14360704 14360734 -37152850 + (CA)n Simple_repeat Simple_repeat 1 30 0 1771 203 70 7 chrY 14360734 14360847 -37152737 + L1MA9 LINE L1 6175 6279 -33 21 0 0 0 chrY 14360895 14360916 -37152668 + AT_rich Low_complexity Low_complexity 1 21 0 1336 134 0 10 chrY 14361987 14362189 -37151395 + AluSc SINE Alu 83 282 -27 316 247 22 22 chrY 14362189 14362278 -37151306 - L1MC4 LINE L1 -1340 6702 6614 395 143 58 7 chrY 14362281 14362435 -37151149 + (TA)n Simple_repeat Simple_repeat 2 163 0 180 0 0 0 chrY 14363661 14363681 -37149903 + (A)n Simple_repeat Simple_repeat 1 20 0 1929 133 25 35 chrY 14363984 14364351 -37149233 - L1MA4 LINE L1 -155 6145 5783 983 292 44 5 chrY 14364366 14364753 -37148831 - L1PBa LINE L1 -6461 402 1 * 1655 173 0 22 chrY 14364750 14365063 -37148521 - L1M1 LINE L1 -507 5798 5493 625 253 27 0 chrY 14365422 14365628 -37147956 - L1MB8 LINE L1 -248 5930 5750 2600 32 7 3 chrY 14365701 14366043 -37147541 + AluY SINE Alu 1 343 0 746 316 83 17 chrY 14366419 14366887 -37146697 + L1ME LINE L1 3 501 -5569 549 217 28 0 chrY 14366921 14367027 -37146557 - MER41D LTR ERV1 -5 552 444 * 1318 146 5 0 chrY 14367024 14367230 -37146354 - MER41D LTR ERV1 -347 210 4 366 23 0 0 chrY 14367254 14367297 -37146287 + (CA)n Simple_repeat Simple_repeat 1 43 0 730 278 75 44 chrY 14367326 14368200 -37145384 + L1ME LINE L1 593 1495 -4585 40880 49 23 2 chrY 14368456 14374472 -37139112 + L1PA2 LINE L1 9 6155 0 480 206 46 15 chrY 14374516 14374647 -37138937 + L1PA13 LINE L1 6029 6163 0 230 280 140 10 chrY 14374695 14374888 -37138696 + L1ME LINE L1 2065 2282 -3798 281 200 14 29 chrY 14374890 14374960 -37138624 + L1ME2 LINE L1 5656 5724 -440 2712 165 56 52 chrY 14374981 14375611 -37137973 + L1MA10 LINE L1 5703 6334 0 751 261 37 69 chrY 14375646 14376052 -37137532 + L1ME2 LINE L1 5762 6154 -10 257 200 0 38 chrY 14376723 14376803 -37136781 + L1MA4 LINE L1 6224 6300 0 1081 200 0 19 chrY 14377550 14377785 -37135799 - AluSg/x SINE Alu 0 306 76 320 0 0 24 chrY 14377811 14377852 -37135732 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7151 52 0 0 chrY 14377852 14378815 -37134769 - L1PA3 LINE L1 -18 6137 5176 21 57 0 0 chrY 14378879 14378914 -37134670 + AT_rich Low_complexity Low_complexity 1 35 0 432 250 0 0 chrY 14379134 14379222 -37134362 + AluS SINE Alu 1 88 -215 327 314 26 13 chrY 14379243 14379399 -37134185 - L1ME LINE L1 -5910 160 3 2620 29 7 3 chrY 14379775 14380115 -37133469 - AluY SINE Alu 0 341 1 625 253 27 0 chrY 14380188 14380394 -37133190 + L1MB8 LINE L1 5750 5966 -248 1655 173 0 22 chrY 14380753 14381066 -37132518 + L1M1 LINE L1 5493 5798 -507 983 292 44 5 chrY 14381063 14381450 -37132134 + L1PBa LINE L1 1 402 -6461 * 1929 133 25 35 chrY 14381465 14381832 -37131752 + L1MA4 LINE L1 5783 6145 -155 180 0 0 0 chrY 14382135 14382155 -37131429 + (T)n Simple_repeat Simple_repeat 1 20 0 395 143 58 7 chrY 14383381 14383535 -37130049 + (TA)n Simple_repeat Simple_repeat 2 163 0 324 244 22 22 chrY 14383538 14383628 -37129956 + L1MC4 LINE L1 6614 6703 -1339 1336 134 0 10 chrY 14383629 14383831 -37129753 - AluSc SINE Alu -27 282 83 21 0 0 0 chrY 14384902 14384923 -37128661 + AT_rich Low_complexity Low_complexity 1 21 0 1771 203 70 7 chrY 14384971 14385084 -37128500 - L1MA9 LINE L1 -33 6279 6175 228 67 0 0 chrY 14385084 14385114 -37128470 + (TG)n Simple_repeat Simple_repeat 1 30 0 1771 203 70 7 chrY 14385114 14385428 -37128156 - L1MA9 LINE L1 -137 6175 5825 575 216 6 0 chrY 14385772 14385934 -37127650 + (CAT)n Simple_repeat Simple_repeat 1 163 0 843 183 0 0 chrY 14385951 14386131 -37127453 + (CAT)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chrY 14387415 14387443 -37126141 + AT_rich Low_complexity Low_complexity 1 28 0 310 229 0 49 chrY 14387774 14387916 -37125668 + MER5B DNA MER1_type 1 177 -1 405 0 0 0 chrY 14388238 14388283 -37125301 + (TA)n Simple_repeat Simple_repeat 1 45 0 424 287 8 8 chrY 14389060 14389182 -37124402 - MLT1E1 LTR MaLR -2 652 531 415 314 94 68 chrY 14389189 14389584 -37124000 - MLT1E1 LTR MaLR -174 419 15 1505 220 0 0 chrY 14390102 14390397 -37123187 + AluJb SINE Alu 5 299 -13 464 228 9 0 chrY 14390474 14390588 -37122996 - L1MB8 LINE L1 -1 6177 6063 321 291 122 35 chrY 14390768 14390940 -37122644 - MIR SINE MIR -18 244 58 1422 197 17 17 chrY 14390958 14391257 -37122327 - AluSx SINE Alu -4 308 10 549 216 95 14 chrY 14391355 14391503 -37122081 - MLT1F1 LTR MaLR -2 565 406 4354 95 27 7 chrY 14391509 14392523 -37121061 - MER11A LTR ERVK 0 1266 1 312 307 32 29 chrY 14392531 14392669 -37120915 - MLT1E LTR MaLR -164 427 252 1397 224 28 33 chrY 14392927 14393316 -37120268 - L1PB4 LINE L1 -5 6151 5765 1983 167 46 0 chrY 14393351 14393699 -37119885 - THE1B LTR MaLR 0 364 1 577 324 88 72 chrY 14394729 14395476 -37118108 + L2 LINE L2 2369 3165 -148 2257 136 25 3 chrY 14395476 14395843 -37117741 + THE1C LTR MaLR 1 375 0 577 324 88 72 chrY 14395843 14395980 -37117604 + L2 LINE L2 3165 3298 -15 1471 194 104 15 chrY 14395984 14396586 -37116998 + LTR34 LTR ERV1 2 699 0 283 264 35 11 chrY 14396666 14396753 -37116831 - MER5B DNA MER1_type -88 90 2 547 187 47 0 chrY 14397509 14397616 -37115968 - FLAM_C SINE Alu -11 132 21 245 184 0 0 chrY 14398327 14398365 -37115219 + MER58 DNA MER1_type 2382 2419 -1 309 316 77 13 chrY 14398739 14398894 -37114690 - L1M4 LINE L1 -2480 3666 3502 747 33 0 0 chrY 14399834 14399924 -37113660 + (CAATA)n Simple_repeat Simple_repeat 3 92 0 1940 171 8 26 chrY 14401320 14401671 -37111913 - THE1B LTR MaLR -3 361 17 2556 187 19 0 chrY 14401797 14402267 -37111317 + L1PA16 LINE L1 5679 6157 -9 780 129 0 0 chrY 14403075 14403199 -37110385 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 1538 208 7 3 chrY 14403242 14403535 -37110049 - AluJb SINE Alu -16 296 3 275 314 131 85 chrY 14403926 14404385 -37109199 + L2 LINE L2 2825 3304 -9 2934 188 45 5 chrY 14404567 14405191 -37108393 - MER39B LTR ERV1 -1 652 4 3940 150 1 27 chrY 14406333 14406795 -37106789 - L1PA14 LINE L1 -224 5937 5497 2524 54 0 10 chrY 14406795 14407109 -37106475 - AluY SINE Alu 0 311 1 3940 150 1 27 chrY 14407109 14407339 -37106245 - L1PA14 LINE L1 -664 5497 5263 869 148 13 0 chrY 14407445 14407600 -37105984 + L1PA13 LINE L1 6007 6163 0 2132 107 0 7 chrY 14407605 14407915 -37105669 + AluY SINE Alu 1 308 -3 599 261 85 55 chrY 14408113 14408512 -37105072 - HAL1b LINE L1 -357 991 581 333 276 149 44 chrY 14408560 14408741 -37104843 - HAL1b LINE L1 -874 474 275 3895 140 36 57 chrY 14408832 14409415 -37104169 + L1PA13 LINE L1 5365 5928 -235 2909 171 19 26 chrY 14409415 14409999 -37103585 + LTR22 LTR ERVK 1 580 0 3895 140 36 57 chrY 14409999 14410220 -37103364 + L1PA13 LINE L1 5928 6152 -11 270 0 0 0 chrY 14410496 14410526 -37103058 + (T)n Simple_repeat Simple_repeat 1 30 0 197 32 0 32 chrY 14410688 14410719 -37102865 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1739 178 41 26 chrY 14410992 14411334 -37102250 - THE1B LTR MaLR -17 347 1 1868 159 0 14 chrY 14411469 14411809 -37101775 - AluY SINE Alu 0 311 1 12780 51 1 0 chrY 14411847 14414223 -37099361 + L1PA3 LINE L1 3772 6155 0 243 0 0 0 chrY 14414232 14414259 -37099325 + (CA)n Simple_repeat Simple_repeat 2 28 0 1782 158 107 9 chrY 14416041 14416369 -37097215 - MSTA LTR MaLR -68 360 1 200 282 26 39 chrY 14416373 14416451 -37097133 - L2 LINE L2 -547 2767 2691 864 176 39 0 chrY 14416501 14416654 -37096930 - AluSc SINE Alu -12 297 139 1346 187 8 4 chrY 14417871 14418138 -37095446 - L1PA16 LINE L1 -4 6162 5895 1104 214 24 0 chrY 14418201 14418453 -37095131 - L1PA16 LINE L1 -258 5908 5651 334 231 14 0 chrY 14418467 14418554 -37095030 - L1MC1 LINE L1 -11 6333 6241 1358 172 37 0 chrY 14418695 14418963 -37094621 - L1MC1 LINE L1 -1 6332 6055 284 138 185 0 chrY 14418963 14419028 -37094556 + MADE1 DNA Mariner 4 80 0 334 148 0 0 chrY 14419029 14419083 -37094501 - L1MC2 LINE L1 -282 6062 6009 305 150 17 0 chrY 14419093 14419153 -37094431 - L1MC2 LINE L1 -682 5492 5432 318 26 0 0 chrY 14419853 14419892 -37093692 + (ATG)n Simple_repeat Simple_repeat 3 41 0 277 323 170 34 chrY 14420687 14421133 -37092451 - L2 LINE L2 -945 2369 1863 345 24 0 0 chrY 14421178 14421220 -37092364 + (TA)n Simple_repeat Simple_repeat 2 43 0 591 193 7 76 chrY 14421518 14421561 -37092023 - FLAM_C SINE Alu -177 135 91 2141 164 6 3 chrY 14421561 14421920 -37091664 + THE1B LTR MaLR 1 360 -4 591 193 7 76 chrY 14421920 14422021 -37091563 - FLAM_C SINE Alu -221 91 1 907 250 10 0 chrY 14422455 14422651 -37090933 + MER58A DNA MER1_type 27 224 0 1428 101 0 15 chrY 14423259 14423458 -37090126 + AluY SINE Alu 1 196 -115 1555 161 0 4 chrY 14423715 14423951 -37089633 - AluSg SINE Alu -75 235 1 180 111 0 0 chrY 14424374 14424401 -37089183 + (CATATA)n Simple_repeat Simple_repeat 1 27 0 4229 141 7 3 chrY 14424450 14425137 -37088447 - L1PA10 LINE L1 -3 6165 5476 3670 67 6 2 chrY 14425164 14425644 -37087940 - L1PA5 LINE L1 -17 6137 5656 32224 92 10 1 chrY 14425647 14430116 -37083468 - L1PA5 LINE L1 -1635 4511 1 2900 169 48 5 chrY 14430085 14431247 -37082337 - L1P4 LINE L1 -643 5525 4081 * 30 45 0 0 chrY 14431296 14431340 -37082244 + AT_rich Low_complexity Low_complexity 1 44 0 230 226 83 24 chrY 14431341 14431425 -37082159 - L1MC4 LINE L1 -1340 6702 6614 * 243 208 0 62 chrY 14431411 14431507 -37082077 + L1MC4 LINE L1 6614 6703 -1339 * 265 267 0 0 chrY 14431439 14431529 -37082055 - L1MC4 LINE L1 -1339 6703 6614 216 86 0 0 chrY 14431537 14431572 -37082012 + (GA)n Simple_repeat Simple_repeat 2 36 0 277 283 50 40 chrY 14431577 14431676 -37081908 - L2 LINE L2 -556 2758 2659 226 329 13 0 chrY 14432029 14432105 -37081479 + L2 LINE L2 2658 2734 -580 596 235 90 97 chrY 14432126 14432602 -37080982 - LTR8 LTR ERV1 -15 712 240 5552 155 5 18 chrY 14433058 14434025 -37079559 + HSMAR2 DNA Mariner 9 963 -339 1748 222 85 26 chrY 14434022 14434491 -37079093 - LTR22 LTR ERVK -12 497 1 * 1810 128 86 9 chrY 14434491 14434818 -37078766 + HSMAR2 DNA Mariner 949 1300 -2 1835 178 0 3 chrY 14435406 14435710 -37077874 - AluSx SINE Alu -9 303 1 537 267 113 13 chrY 14436052 14436461 -37077123 + MLT1C LTR MaLR 1 466 -1 556 286 18 24 chrY 14437138 14437306 -37076278 + MER5A DNA MER1_type 2 168 -21 252 188 0 0 chrY 14438434 14438503 -37075081 + CT-rich Low_complexity Low_complexity 2 70 0 675 37 0 0 chrY 14438531 14438613 -37074971 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 29 60 0 0 chrY 14439896 14439946 -37073638 + AT_rich Low_complexity Low_complexity 1 50 0 370 223 32 11 chrY 14440003 14440097 -37073487 - AluSp/q SINE Alu -3 300 205 872 299 42 8 chrY 14440497 14440761 -37072823 + MER58 DNA MER1_type 2 274 -67 309 256 37 0 chrY 14441199 14441281 -37072303 + MER53 DNA DNA 3 87 -102 1812 177 17 8 chrY 14441283 14441639 -37071945 + LTR24C LTR ERV1 1 359 -276 314 123 18 0 chrY 14441664 14441721 -37071863 + LTR24B LTR ERV1 514 571 -5 213 250 0 0 chrY 14441735 14441783 -37071801 + (TA)n Simple_repeat Simple_repeat 1 48 0 246 62 0 0 chrY 14441783 14441815 -37071769 + (TG)n Simple_repeat Simple_repeat 1 32 0 5109 113 9 0 chrY 14442546 14443290 -37070294 + L1PA8 LINE L1 5320 6070 -102 27 0 0 0 chrY 14443646 14443673 -37069911 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chrY 14443849 14443888 -37069696 + AT_rich Low_complexity Low_complexity 1 39 0 1619 194 20 0 chrY 14443945 14444239 -37069345 - AluSx SINE Alu -12 300 1 212 254 0 15 chrY 14444274 14444341 -37069243 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1056 274 21 80 chrY 14444682 14445109 -37068475 + MLT2B1 LTR ERVL 7 408 -112 529 264 25 7 chrY 14445110 14445361 -37068223 + MLT2B1 LTR ERVL 267 422 -98 * 723 271 37 4 chrY 14445360 14445642 -37067942 + MLT2B1 LTR ERVL 269 462 -58 704 271 55 17 chrY 14446158 14446339 -37067245 + MER20 DNA MER1_type 31 218 -1 247 153 68 0 chrY 14446607 14446666 -37066918 - MLT2B1 LTR ERVL 0 520 458 490 133 28 44 chrY 14446666 14446781 -37066803 + (TAGA)n Simple_repeat Simple_repeat 1 113 -65 1646 187 50 22 chrY 14446781 14447145 -37066439 - THE1C LTR MaLR -1 374 1 490 133 28 44 chrY 14447145 14447210 -37066374 + (TAGA)n Simple_repeat Simple_repeat 113 178 0 1085 201 138 68 chrY 14447210 14447594 -37065990 - MLT2B1 LTR ERVL -19 501 91 357 208 13 19 chrY 14447663 14447822 -37065762 + (TCTA)n Simple_repeat Simple_repeat 1 158 0 275 130 74 0 chrY 14447823 14447877 -37065707 + MLT2B1 LTR ERVL 463 520 0 266 180 79 34 chrY 14447877 14447963 -37065621 - MLT2B1 LTR ERVL -430 90 1 2356 202 14 8 chrY 14448363 14448867 -37064717 + L1MA4 LINE L1 5425 5931 -369 3966 141 47 25 chrY 14448867 14449851 -37063733 - MER11A LTR ERVK 0 1266 12 1671 194 11 13 chrY 14449851 14450227 -37063357 + L1MA4 LINE L1 5914 6288 -12 7169 53 1 0 chrY 14450274 14451745 -37061839 - L1PA3 LINE L1 -3 6152 4681 1482 239 31 0 chrY 14452312 14452701 -37060883 - L1 LINE L1 -1169 4977 4577 1494 210 50 17 chrY 14452701 14453076 -37060508 + L1PA16 LINE L1 5758 6146 -20 24 0 0 0 chrY 14453983 14454007 -37059577 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrY 14454236 14454276 -37059308 + (TG)n Simple_repeat Simple_repeat 1 63 0 207 0 0 0 chrY 14454276 14454299 -37059285 + (TG)n Simple_repeat Simple_repeat 2 24 0 420 283 190 26 chrY 14454337 14454838 -37058746 - L1MC4a LINE L1 -1895 5913 5331 222 37 0 0 chrY 14456282 14456309 -37057275 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 7328 49 2 11 chrY 14456355 14457258 -37056326 - MER11D LTR ERVK -1 896 2 7326 50 25 3 chrY 14457259 14458208 -37055376 - HERVK11D LTR ERVK 0 7752 6783 * 54585 46 2 4 chrY 14458198 14464802 -37048782 - HERVK11D LTR ERVK -1161 6591 1 7390 58 1 0 chrY 14464802 14465698 -37047886 - MER11D LTR ERVK 0 897 1 535 234 156 16 chrY 14465719 14465963 -37047621 + L1ME3A LINE L1 5412 5689 -473 942 292 41 10 chrY 14466012 14466403 -37047181 + L1ME3A LINE L1 5763 6165 -5 304 22 22 22 chrY 14466856 14466902 -37046682 + (TA)n Simple_repeat Simple_repeat 1 46 0 279 173 0 0 chrY 14467340 14467392 -37046192 + (TA)n Simple_repeat Simple_repeat 2 53 0 270 289 0 0 chrY 14467394 14467484 -37046100 + L1MC4 LINE L1 6614 6703 -1339 254 219 0 62 chrY 14467490 14467586 -37045998 + L1MC4 LINE L1 6614 6703 -1339 301 337 0 0 chrY 14467598 14467690 -37045894 + L1MC4 LINE L1 6614 6705 -1337 * 308 279 47 0 chrY 14467664 14467750 -37045834 - L1MC4 LINE L1 -1339 6703 6614 460 265 60 0 chrY 14467800 14467966 -37045618 + MER45A DNA AcHobo 3 178 0 716 256 0 0 chrY 14468137 14468293 -37045291 - FRAM SINE Alu -20 156 1 26 30 0 0 chrY 14468717 14468750 -37044834 + AT_rich Low_complexity Low_complexity 1 33 0 1538 211 7 0 chrY 14468767 14469070 -37044514 - AluSx SINE Alu -7 305 1 918 156 0 0 chrY 14469070 14469205 -37044379 - AluSq/x SINE Alu -177 135 1 30 45 0 0 chrY 14469587 14469631 -37043953 + AT_rich Low_complexity Low_complexity 1 44 0 1678 143 169 53 chrY 14469680 14469871 -37043713 - MSTA LTR MaLR 0 428 261 2004 130 0 10 chrY 14469871 14470170 -37043414 - AluY SINE Alu -11 300 5 1678 143 169 53 chrY 14470170 14470357 -37043227 - MSTA LTR MaLR -167 261 6 202 57 0 57 chrY 14471155 14471190 -37042394 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 429 324 43 0 chrY 14471268 14471407 -37042177 - MER5A DNA MER1_type -26 163 19 6414 107 28 2 chrY 14471814 14472723 -37040861 + L1PA7 LINE L1 4378 5328 -826 279 0 0 0 chrY 14472723 14472754 -37040830 + (CA)n Simple_repeat Simple_repeat 2 32 0 6414 107 28 2 chrY 14472754 14473316 -37040268 + L1PA7 LINE L1 5328 5874 -280 1379 186 96 15 chrY 14474799 14475133 -37038451 + MLT1A1 LTR MaLR 5 365 0 521 189 72 9 chrY 14476139 14476250 -37037334 - MER5A DNA MER1_type -67 122 5 558 131 0 0 chrY 14476529 14476613 -37036971 + L1PA6 LINE L1 5784 5867 -287 321 215 21 0 chrY 14477678 14477771 -37035813 + (TA)n Simple_repeat Simple_repeat 1 95 0 1058 215 45 55 chrY 14477801 14478112 -37035472 + AluJo SINE Alu 1 308 -4 1504 202 58 19 chrY 14478555 14478916 -37034668 - THE1C LTR MaLR 0 375 1 2248 189 2 39 chrY 14479242 14479584 -37034000 + L1MB5 LINE L1 5702 6022 -152 1492 179 19 45 chrY 14479584 14479896 -37033688 - AluSx SINE Alu -8 304 1 2248 189 2 39 chrY 14479896 14480044 -37033540 + L1MB5 LINE L1 6022 6174 0 1794 158 7 7 chrY 14480214 14480511 -37033073 + AluSq SINE Alu 12 308 -5 1029 278 11 26 chrY 14480567 14480776 -37032808 - L1MD3 LINE L1 -10 7985 7783 1347 215 77 14 chrY 14480776 14481129 -37032455 - THE1C LTR MaLR 0 375 1 1029 278 11 26 chrY 14481129 14481301 -37032283 - L1MD3 LINE L1 -212 7783 7610 486 264 9 9 chrY 14482776 14482886 -37030698 + FLAM_A SINE Alu 8 117 -25 687 229 37 65 chrY 14484502 14484931 -37028653 - MLT1A1 LTR MaLR 0 374 1 877 227 5 16 chrY 14485559 14485753 -37027831 - AluJb SINE Alu -21 291 100 1618 186 93 18 chrY 14485799 14486132 -37027452 - THE1B LTR MaLR 0 364 7 1065 76 23 0 chrY 14486143 14486407 -37027177 + (TCTA)n Simple_repeat Simple_repeat 1 270 0 26 0 0 0 chrY 14486675 14486701 -37026883 + AT_rich Low_complexity Low_complexity 1 26 0 802 134 91 64 chrY 14486706 14486893 -37026691 + MER21A LTR ERV1 9 200 -731 1992 163 45 6 chrY 14486932 14487289 -37026295 + THE1C LTR MaLR 1 371 -4 2026 202 104 104 chrY 14487298 14488031 -37025553 + MER21A LTR ERV1 182 914 -17 433 219 14 26 chrY 14488361 14488489 -37025095 + MSTA LTR MaLR 241 426 -2 1559 221 92 22 chrY 14488677 14489005 -37024579 + MLT1D LTR MaLR 1 305 -349 1815 165 74 6 chrY 14489005 14489344 -37024240 - THE1B LTR MaLR 0 364 3 1559 221 92 22 chrY 14489344 14489480 -37024104 + MLT1D LTR MaLR 305 654 0 2323 184 63 11 chrY 14489620 14490083 -37023501 + LTR45B LTR ERV1 3 489 0 11514 86 11 3 chrY 14490401 14493180 -37020404 - L1PA6 LINE L1 -7 6147 3207 213 250 16 31 chrY 14493916 14493980 -37019604 + GA-rich Low_complexity Low_complexity 3 65 0 552 284 23 23 chrY 14494319 14494495 -37019089 + MER58A DNA MER1_type 32 207 -17 826 172 17 13 chrY 14494690 14494929 -37018655 + GA-rich Low_complexity Low_complexity 1 240 0 847 201 7 5 chrY 14494954 14495394 -37018190 + GA-rich Low_complexity Low_complexity 1 440 0 775 183 11 0 chrY 14495427 14495602 -37017982 + GA-rich Low_complexity Low_complexity 3 179 0 1690 202 16 47 chrY 14495983 14496370 -37017214 + THE1C LTR MaLR 1 375 0 565 180 69 4 chrY 14496410 14496572 -37017012 + MSTA LTR MaLR 2 193 -208 1885 152 0 7 chrY 14496572 14496855 -37016729 + AluSq SINE Alu 1 281 -32 701 23 0 11 chrY 14496855 14496943 -37016641 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 372 285 61 71 chrY 14497919 14498245 -37015339 + L1M4 LINE L1 4455 4777 -1369 2106 134 0 0 chrY 14498531 14498837 -37014747 - AluY SINE Alu -5 306 1 1219 223 59 14 chrY 14498879 14499056 -37014528 - AluJo SINE Alu -1 301 105 1912 180 0 0 chrY 14499056 14499362 -37014222 + AluSx SINE Alu 2 307 -5 1219 223 59 14 chrY 14499362 14499471 -37014113 - AluJo SINE Alu -197 105 2 269 352 45 19 chrY 14499485 14499749 -37013835 + L1MCc LINE L1 130 400 -6023 1691 245 76 14 chrY 14500061 14500122 -37013462 + MER44D DNA MER2_type 78 134 -2353 1474 171 72 39 chrY 14500122 14500485 -37013099 - THE1C LTR MaLR 0 375 1 1691 245 76 14 chrY 14500485 14500868 -37012716 + MER44D DNA MER2_type 134 605 0 438 223 27 40 chrY 14500936 14500970 -37012614 + MER3 DNA MER1_type 9 42 -120 1668 214 17 8 chrY 14500970 14501326 -37012258 - MLT1A1 LTR MaLR -4 361 3 438 223 27 40 chrY 14501326 14501439 -37012145 + MER3 DNA MER1_type 42 154 -55 29617 75 2 1 chrY 14501441 14507591 -37005993 - L1PA4 LINE L1 0 6155 1 2322 166 80 9 chrY 14507751 14508190 -37005394 + MER1A DNA MER1_type 60 529 0 272 279 0 0 chrY 14508263 14508331 -37005253 - MER58A DNA MER1_type -123 101 34 336 292 0 0 chrY 14508355 14508485 -37005099 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 746 211 25 13 chrY 14508528 14508810 -37004774 - THE1B LTR MaLR -10 354 1 256 302 25 31 chrY 14508898 14509057 -37004527 + L1ME LINE L1 5514 5671 -495 38637 56 24 2 chrY 14509059 14515072 -36998512 + L1PA3 LINE L1 1 6151 -4 413 237 12 0 chrY 14515090 14515238 -36998346 + L1ME LINE L1 5649 5802 -360 745 137 132 58 chrY 14515238 14515419 -36998165 - THE1B LTR MaLR 0 364 180 268 308 0 10 chrY 14515468 14515572 -36998012 - L1ME3A LINE L1 -60 6110 6008 23 33 0 0 chrY 14515744 14515774 -36997810 + AT_rich Low_complexity Low_complexity 1 30 0 414 390 8 24 chrY 14517067 14517318 -36996266 + L2 LINE L2 2562 2808 -506 1293 202 0 67 chrY 14517468 14517780 -36995804 - AluJo SINE Alu -21 291 1 25 0 0 0 chrY 14518099 14518124 -36995460 + AT_rich Low_complexity Low_complexity 1 25 0 971 204 9 9 chrY 14518133 14518354 -36995230 - MLT1B LTR MaLR -8 382 162 1634 191 13 49 chrY 14518358 14518639 -36994945 - MLT1B LTR MaLR 0 396 128 2518 58 3 13 chrY 14518639 14518950 -36994634 - AluY SINE Alu -2 309 2 1634 191 13 49 chrY 14518950 14519074 -36994510 - MLT1B LTR MaLR -268 128 1 182 279 23 81 chrY 14520384 14520470 -36993114 + L3 LINE CR1 264 344 -1233 492 117 36 7 chrY 14520628 14520765 -36992819 + (TAGA)n Simple_repeat Simple_repeat 4 144 0 737 258 0 6 chrY 14521521 14521688 -36991896 - FRAM SINE Alu -13 163 1 2391 172 9 5 chrY 14521783 14522207 -36991377 - MSTA LTR MaLR -2 426 1 13344 132 37 29 chrY 14522715 14525185 -36988399 - L1P3 LINE L1 -590 5582 3100 2733 201 21 7 chrY 14525185 14525757 -36987827 - LTR22 LTR ERVK 0 580 1 13344 132 37 29 chrY 14525757 14526030 -36987554 - L1P3 LINE L1 -3072 3100 2831 534 204 75 0 chrY 14526032 14526179 -36987405 + MLT1D LTR MaLR 15 172 -333 808 273 5 0 chrY 14526205 14526403 -36987181 - AluJo SINE Alu -27 285 87 10971 143 9 20 chrY 14526579 14526673 -36986911 - L1P LINE L1 -2357 3789 3695 255 31 0 0 chrY 14526673 14526705 -36986879 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 10971 143 9 20 chrY 14526705 14528193 -36985391 - L1P LINE L1 -2451 3695 2232 1961 125 7 0 chrY 14528193 14528545 -36985039 - AluY SINE Alu 0 354 1 10971 143 9 20 chrY 14528545 14529016 -36984568 - L1P LINE L1 -3914 2232 1757 5221 134 10 6 chrY 14529013 14529893 -36983691 + L1PA7 LINE L1 3804 4687 -1459 * 6249 100 1 9 chrY 14529893 14531158 -36982426 + L1PA7 LINE L1 4897 6154 0 261 140 0 70 chrY 14531373 14531430 -36982154 + MER116 DNA Mariner 27 79 -1 1932 158 26 42 chrY 14531753 14531993 -36981591 - THE1C LTR MaLR -1 374 141 591 108 0 0 chrY 14531993 14532086 -36981498 + (TGGA)n Simple_repeat Simple_repeat 3 95 0 1932 158 26 42 chrY 14532086 14532225 -36981359 - THE1C LTR MaLR -234 141 1 186 43 0 0 chrY 14532315 14532338 -36981246 + (T)n Simple_repeat Simple_repeat 1 23 0 199 217 150 0 chrY 14532354 14532414 -36981170 + L3b LINE CR1 1319 1387 -196 637 176 7 7 chrY 14533596 14533744 -36979840 + (TGGA)n Simple_repeat Simple_repeat 2 149 0 264 136 91 0 chrY 14533763 14533829 -36979755 + (TGGA)n Simple_repeat Simple_repeat 1 72 0 565 323 41 9 chrY 14534236 14534456 -36979128 - MIR SINE MIR 0 262 36 319 254 0 0 chrY 14534472 14534539 -36979045 + MER106B DNA MER1_type 4 70 -989 995 277 113 11 chrY 14534678 14535119 -36978465 + MLT1E LTR MaLR 97 582 -11 827 138 0 0 chrY 14535569 14535707 -36977877 - MLT2A2 LTR ERVL -315 138 1 387 162 14 0 chrY 14535724 14535798 -36977786 + MLT1A1 LTR MaLR 12 86 -279 201 121 0 0 chrY 14536256 14536289 -36977295 + (A)n Simple_repeat Simple_repeat 1 33 0 387 0 0 0 chrY 14536597 14536640 -36976944 + (TTA)n Simple_repeat Simple_repeat 3 45 0 5594 96 1 7 chrY 14536640 14537454 -36976130 - L1PA6 LINE L1 -18 6136 5328 1984 158 11 29 chrY 14537825 14538199 -36975385 - THE1C LTR MaLR -8 367 1 304 305 49 10 chrY 14538256 14538433 -36975151 - L1ME3 LINE L1 -196 5966 5787 933 199 133 13 chrY 14538835 14539061 -36974523 - MSTA LTR MaLR -175 253 1 358 299 44 10 chrY 14539063 14539267 -36974317 - L1ME3 LINE L1 -763 5383 5173 377 212 0 44 chrY 14539535 14539648 -36973936 - L1MA7 LINE L1 -11 6280 6173 1423 220 24 7 chrY 14539791 14540087 -36973497 - AluJb SINE Alu -11 301 1 254 233 0 0 chrY 14542240 14542300 -36971284 - MLT1A1 LTR MaLR -3 362 303 * 987 205 113 0 chrY 14542292 14542521 -36971063 - LTR19A LTR ERV1 -231 255 1 18942 105 36 5 chrY 14542521 14545558 -36968026 - LTR19A-int LTR ERV1 0 5586 2455 411 224 112 0 chrY 14545569 14545685 -36967899 + LTR8 LTR ERV1 129 257 -434 569 68 0 0 chrY 14545685 14545773 -36967811 - LTR19-int LTR ERV1 -3329 2257 2170 307 173 0 0 chrY 14545775 14545827 -36967757 + L1MC4 LINE L1 6652 6703 -1339 9170 127 46 14 chrY 14545830 14547387 -36966197 - MER4B-int LTR ERV1 -3761 1825 219 1252 158 75 4 chrY 14547387 14547627 -36965957 - LTR19A LTR ERV1 -229 257 1 22 35 0 0 chrY 14547638 14547667 -36965917 + AT_rich Low_complexity Low_complexity 1 29 0 332 204 7 20 chrY 14547745 14547865 -36965719 + (TA)n Simple_repeat Simple_repeat 2 121 -25 1615 188 32 12 chrY 14547865 14548205 -36965379 - MER7A DNA MER2_type -1 345 1 332 204 7 20 chrY 14548205 14548231 -36965353 + (TA)n Simple_repeat Simple_repeat 121 146 0 1794 151 125 31 chrY 14548283 14548758 -36964826 - MER4B LTR ERV1 0 766 102 220 338 29 0 chrY 14548903 14548971 -36964613 - MIR SINE MIR -114 148 79 322 163 48 7 chrY 14549050 14549197 -36964387 + (TA)n Simple_repeat Simple_repeat 2 154 0 192 77 0 0 chrY 14550535 14550561 -36963023 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1591 174 10 24 chrY 14550594 14550888 -36962696 + AluSx SINE Alu 5 294 -18 227 264 94 38 chrY 14551150 14551256 -36962328 - L1M4 LINE L1 -3349 2797 2686 2307 186 35 85 chrY 14551342 14552058 -36961526 + LTR8 LTR ERV1 1 680 -11 830 248 97 18 chrY 14552342 14552997 -36960587 + L1ME2 LINE L1 5118 5851 -313 2073 166 111 9 chrY 14553118 14553559 -36960025 + LTR19A LTR ERV1 1 486 0 2561 163 33 4 chrY 14553559 14554039 -36959545 + HERVFH19I LTR ERV1 1 494 -7225 4633 127 18 0 chrY 14554039 14554715 -36958869 + LTR12 LTR ERV1 1 688 0 46970 108 8 5 chrY 14554715 14563096 -36950488 + HERV9 LTR ERV1 1 8399 0 2518 105 169 141 chrY 14563096 14563887 -36949697 + LTR12 LTR ERV1 1 2438 0 * 7156 119 51 22 chrY 14563887 14565180 -36948404 + LTR19-int LTR ERV1 477 1888 -3698 204 67 0 0 chrY 14565180 14565210 -36948374 + (TG)n Simple_repeat Simple_repeat 1 30 0 7156 119 51 22 chrY 14565210 14565612 -36947972 + LTR19-int LTR ERV1 1888 2277 -3309 2702 73 116 0 chrY 14565637 14566061 -36947523 + LTR19-int LTR ERV1 2493 2965 -2621 604 99 79 0 chrY 14566061 14566162 -36947422 + LTR19A LTR ERV1 323 431 -55 729 182 0 0 chrY 14566163 14566284 -36947300 - AluSq SINE Alu -59 254 134 2075 128 3 7 chrY 14566284 14566582 -36947002 - AluY SINE Alu -1 310 14 557 233 8 0 chrY 14566640 14566773 -36946811 + L1ME2 LINE L1 6016 6149 -15 236 271 0 0 chrY 14567077 14567147 -36946437 + (TA)n Simple_repeat Simple_repeat 1 70 0 1745 74 9 0 chrY 14567147 14567377 -36946207 - L1PA7 LINE L1 -13 6141 5910 1855 108 0 15 chrY 14567378 14567646 -36945938 + AluY SINE Alu 44 307 -4 1391 166 10 37 chrY 14567646 14567941 -36945643 - LTR8 LTR ERV1 -404 287 1 783 219 144 46 chrY 14568064 14568411 -36945173 - MER39 LTR ERV1 -2 705 325 362 275 76 15 chrY 14568409 14568540 -36945044 - MER39 LTR ERV1 -568 139 1 * 1928 222 36 11 chrY 14568540 14568682 -36944902 + L1MB3 LINE L1 5642 5779 -404 1905 158 37 8 chrY 14568682 14569036 -36944548 - THE1B LTR MaLR 0 364 1 1928 222 36 11 chrY 14569036 14569421 -36944163 + L1MB3 LINE L1 5779 6182 -1 198 0 0 0 chrY 14569523 14569545 -36944039 + (TC)n Simple_repeat Simple_repeat 2 23 0 25 31 0 0 chrY 14570043 14570075 -36943509 + AT_rich Low_complexity Low_complexity 1 32 0 330 224 35 0 chrY 14570092 14570177 -36943407 + L1MD1 LINE L1 5741 5828 -531 504 184 11 0 chrY 14570203 14570290 -36943294 - AluJ/FLAM SINE Alu -224 88 1 793 262 29 0 chrY 14570290 14570565 -36943019 + L1MD1 LINE L1 5818 6100 -142 1065 175 31 116 chrY 14570574 14570613 -36942971 - MLT1A1 LTR MaLR 0 365 324 1997 162 34 0 chrY 14570613 14570964 -36942620 + THE1B LTR MaLR 2 364 0 1065 175 31 116 chrY 14570964 14571313 -36942271 - MLT1A1 LTR MaLR -41 324 10 441 230 7 15 chrY 14571321 14571456 -36942128 + L1MD1 LINE L1 6106 6239 -3 1583 187 0 11 chrY 14572578 14572862 -36940722 + AluJb SINE Alu 9 289 -23 44 0 0 0 chrY 14573078 14573122 -36940462 + AT_rich Low_complexity Low_complexity 1 44 0 1890 157 3 0 chrY 14573122 14573409 -36940175 - AluSp SINE Alu -24 289 2 271 288 0 0 chrY 14574085 14574165 -36939419 + (TTA)n Simple_repeat Simple_repeat 1 80 0 1268 214 35 14 chrY 14575246 14575535 -36938049 + AluJo SINE Alu 1 295 -17 1407 232 57 19 chrY 14575578 14575996 -36937588 + MER44D DNA MER2_type 2 490 -115 737 204 0 0 chrY 14575997 14576129 -36937455 + FLAM_C SINE Alu 2 133 0 1506 209 7 10 chrY 14576150 14576447 -36937137 + AluJo SINE Alu 1 296 -16 3511 141 102 1 chrY 14576489 14577135 -36936449 + LTR62 LTR ERVK 3 713 -6 240 225 11 22 chrY 14577290 14577379 -36936205 + L1MC5 LINE L1 7630 7717 -244 4653 101 14 3 chrY 14577453 14578109 -36935475 - PABL_B LTR ERV1 -4 663 1 207 204 0 0 chrY 14578203 14578247 -36935337 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1451 221 6 20 chrY 14579147 14579495 -36934089 + MLT1A1 LTR MaLR 11 353 -12 1370 193 8 12 chrY 14579964 14580213 -36933371 + AluJo SINE Alu 35 282 -30 531 82 0 0 chrY 14580213 14580286 -36933298 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 1221 215 21 3 chrY 14580505 14580789 -36932795 + AluJo SINE Alu 11 299 -13 23 0 0 0 chrY 14580880 14580903 -36932681 + AT_rich Low_complexity Low_complexity 1 23 0 1345 139 5 0 chrY 14581400 14581587 -36931997 - AluSg/x SINE Alu -12 300 113 695 117 55 0 chrY 14581894 14582022 -36931562 - L1P LINE L1 -3689 2457 2323 * 7998 147 10 17 chrY 14582020 14583953 -36929631 + L1P3 LINE L1 719 2641 -3820 283 287 0 50 chrY 14584875 14584976 -36928608 + MER61E LTR ERV1 1 96 -473 1259 249 37 96 chrY 14585042 14585586 -36927998 + MER61E LTR ERV1 174 561 -8 180 311 117 29 chrY 14586199 14586302 -36927282 - L2 LINE L2 -7 3306 3195 2641 188 22 79 chrY 14586487 14587220 -36926364 - LTR8 LTR ERV1 0 691 1 2192 191 182 52 chrY 14587769 14588500 -36925084 + LTR1B LTR ERV1 1 826 0 24 0 0 0 chrY 14588714 14588738 -36924846 + AT_rich Low_complexity Low_complexity 1 24 0 218 281 85 0 chrY 14589070 14589152 -36924432 + MIR SINE MIR 161 249 -13 1498 55 0 0 chrY 14589883 14590092 -36923492 + L1PA3 LINE L1 5955 6163 0 246 349 56 41 chrY 14590680 14590875 -36922709 + L2 LINE L2 2479 2676 -638 2037 165 40 3 chrY 14591013 14591364 -36922220 - THE1B LTR MaLR 0 364 1 225 326 65 14 chrY 14591441 14591579 -36922005 - L2 LINE L2 -1025 2289 2145 242 286 71 89 chrY 14591702 14591814 -36921770 - MIR SINE MIR -112 150 41 1788 189 99 25 chrY 14591854 14592299 -36921285 - LTR8A LTR ERV1 -249 478 1 252 377 64 28 chrY 14592311 14592735 -36920849 - L2 LINE L2 -2200 1114 676 1427 188 58 9 chrY 14592771 14593101 -36920483 - MLT1A1 LTR MaLR -6 359 14 1265 192 0 0 chrY 14593144 14593363 -36920221 - AluSg/x SINE Alu -18 292 74 2179 129 0 7 chrY 14593783 14594077 -36919507 + AluY SINE Alu 1 292 -19 3795 176 6 7 chrY 14594805 14595516 -36918068 + MER50 LTR ERV1 1 710 -24 1738 161 16 38 chrY 14595772 14595857 -36917727 + MER47A DNA MER2_type 2 87 -2236 2175 174 32 49 chrY 14595857 14596351 -36917233 - LTR19A LTR ERV1 0 486 1 1738 161 16 38 chrY 14596351 14596637 -36916947 + MER47A DNA MER2_type 87 365 -1 39165 51 21 4 chrY 14597708 14603752 -36909832 - L1PA3 LINE L1 -5 6150 2 1208 202 26 59 chrY 14604331 14604638 -36908946 + AluJo SINE Alu 1 297 -5 1187 207 111 35 chrY 14605919 14606266 -36907318 + LTR54B LTR ERV1 7 395 -103 1852 172 0 0 chrY 14606266 14606557 -36907027 - AluSx SINE Alu -21 291 1 1187 207 111 35 chrY 14606557 14606643 -36906941 + LTR54B LTR ERV1 395 473 -25 1277 199 14 14 chrY 14607202 14607479 -36906105 - MER72 LTR ERV1 0 722 446 1340 129 13 0 chrY 14607480 14607704 -36905880 - MER41A LTR ERV1 -94 460 234 755 221 7 0 chrY 14607726 14607866 -36905718 + FRAM SINE Alu 1 141 -35 180 0 0 0 chrY 14607871 14607891 -36905693 + (CA)n Simple_repeat Simple_repeat 1 20 0 809 282 52 75 chrY 14607904 14608330 -36905254 - MER72 LTR ERV1 -306 416 1 3613 124 9 0 chrY 14608397 14608946 -36904638 - MER41A LTR ERV1 0 554 1 520 220 15 85 chrY 14609068 14609326 -36904258 + MER31B LTR ERV1 3 325 -160 1277 164 67 19 chrY 14609335 14609873 -36903711 + LTR29 LTR ERV1 20 622 0 309 272 11 11 chrY 14609902 14609994 -36903590 + MER67D LTR ERV1 399 490 -24 1914 165 7 0 chrY 14610012 14610297 -36903287 - AluSx SINE Alu -25 287 1 23 33 0 0 chrY 14610570 14610600 -36902984 + AT_rich Low_complexity Low_complexity 1 30 0 1963 187 60 50 chrY 14610608 14611089 -36902495 + LTR19A LTR ERV1 1 486 0 600 141 215 0 chrY 14611089 14611210 -36902374 + LTR19A-int LTR ERV1 1 147 -5439 222 45 68 0 chrY 14611210 14611254 -36902330 + CT-rich Low_complexity Low_complexity 1 47 0 4689 166 87 10 chrY 14611257 14612191 -36901393 + LTR19A-int LTR ERV1 279 1284 -4302 * 23993 101 50 33 chrY 14612188 14616266 -36897318 + LTR19A-int LTR ERV1 1436 5584 -2 1868 179 60 54 chrY 14616268 14616749 -36896835 + LTR19A LTR ERV1 1 484 -2 540 256 51 17 chrY 14617030 14617206 -36896378 - MLT1D LTR MaLR 0 505 324 228 111 0 0 chrY 14617216 14617252 -36896332 + (TG)n Simple_repeat Simple_repeat 2 37 0 1160 64 9 30 chrY 14617409 14617642 -36895942 + (GAAA)n Simple_repeat Simple_repeat 1 228 0 26 50 0 0 chrY 14618003 14618043 -36895541 + AT_rich Low_complexity Low_complexity 1 40 0 2493 138 3 0 chrY 14618124 14618487 -36895097 + THE1B LTR MaLR 1 364 0 497 193 74 57 chrY 14618488 14618664 -36894920 + MLT1D LTR MaLR 1 179 -447 928 263 28 0 chrY 14618697 14618944 -36894640 + MLT1D LTR MaLR 247 500 -5 2413 206 71 40 chrY 14619307 14619447 -36894137 + LTR8A LTR ERV1 1 135 -592 1814 176 0 0 chrY 14619447 14619742 -36893842 - AluSc SINE Alu -12 297 3 2413 206 71 40 chrY 14619742 14620305 -36893279 + LTR8A LTR ERV1 135 726 -1 32 26 0 0 chrY 14620927 14620966 -36892618 + AT_rich Low_complexity Low_complexity 1 39 0 827 206 6 12 chrY 14620966 14621126 -36892458 + AluJb SINE Alu 134 292 -20 1579 219 30 7 chrY 14621916 14622271 -36891313 - MLT1A1 LTR MaLR 0 365 4 1183 203 7 116 chrY 14622752 14623053 -36890531 - AluJo SINE Alu -44 268 1 214 286 23 38 chrY 14623087 14623220 -36890364 + (CATATA)n Simple_repeat Simple_repeat 2 132 0 215 61 30 0 chrY 14624252 14624285 -36889299 + (TA)n Simple_repeat Simple_repeat 2 35 0 3076 102 22 0 chrY 14624297 14624757 -36888827 + L1PA7 LINE L1 5675 6144 -10 188 159 0 23 chrY 14625725 14625769 -36887815 + CT-rich Low_complexity Low_complexity 3 45 0 2206 116 3 0 chrY 14626005 14626315 -36887269 + AluY SINE Alu 1 311 0 1298 143 0 14 chrY 14626831 14627040 -36886544 + AluY SINE Alu 97 302 -9 1131 132 8 97 chrY 14627040 14627077 -36886507 - Tigger2a DNA MER2_type -2472 236 197 1818 139 3 17 chrY 14627077 14627398 -36886186 + AluSc SINE Alu 1 317 0 1131 132 8 97 chrY 14627398 14627615 -36885969 - Tigger2a DNA MER2_type -2511 197 2 246 258 118 43 chrY 14628440 14628626 -36884958 + L1ME2 LINE L1 5879 6078 -86 1081 220 66 120 chrY 14628843 14629375 -36884209 + LTR1B LTR ERV1 311 813 -13 3768 138 17 8 chrY 14630173 14630817 -36882767 + MER4A LTR ERV1 15 664 0 201 74 0 0 chrY 14631005 14631032 -36882552 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1262 204 25 3 chrY 14631410 14631695 -36881889 + MER49 LTR ERV1 1 291 -632 301 215 23 0 chrY 14631735 14631818 -36881766 + LTR39 LTR ERV1 404 637 -266 753 216 6 23 chrY 14631819 14631995 -36881589 + FRAM SINE Alu 1 170 -6 892 237 61 8 chrY 14631995 14632240 -36881344 + MER4D LTR ERV1 636 893 -10 358 403 14 0 chrY 14632327 14632471 -36881113 + MER91A DNA MER1_type 25 170 -26 233 253 20 10 chrY 14632662 14632761 -36880823 + (TATAA)n Simple_repeat Simple_repeat 4 103 0 189 163 65 0 chrY 14632763 14632855 -36880729 + (TA)n Simple_repeat Simple_repeat 1 98 0 343 182 33 61 chrY 14632926 14633162 -36880422 + (TATAA)n Simple_repeat Simple_repeat 1 229 0 1792 160 79 8 chrY 14633163 14633527 -36880057 - Tigger3(Golem) DNA MER2_type -95 2934 2545 3064 160 58 66 chrY 14633527 14633635 -36879949 - LTR8 LTR ERV1 -2 689 582 1596 195 35 35 chrY 14633635 14634010 -36879574 - THE1C LTR MaLR 0 375 1 3064 160 58 66 chrY 14634010 14634595 -36878989 - LTR8 LTR ERV1 -109 582 2 1843 135 24 55 chrY 14634597 14634701 -36878883 - Tigger3(Golem) DNA MER2_type -479 2550 2444 2586 42 0 13 chrY 14634701 14635012 -36878572 + AluY SINE Alu 1 307 -4 1843 135 24 55 chrY 14635012 14635329 -36878255 - Tigger3(Golem) DNA MER2_type -585 2444 2142 714 182 0 88 chrY 14635346 14635516 -36878068 - Tigger3(Golem) DNA MER2_type -2871 158 4 1787 187 78 9 chrY 14636504 14636852 -36876732 + MER83C LTR ERV1 1 372 -1 578 147 95 35 chrY 14636956 14637072 -36876512 + AluJb SINE Alu 10 132 -180 1889 135 20 20 chrY 14637225 14637521 -36876063 + AluSp SINE Alu 1 296 -17 714 246 27 0 chrY 14637622 14637805 -36875779 + MER2 DNA MER2_type 1 188 -157 21 0 0 0 chrY 14637860 14637881 -36875703 + AT_rich Low_complexity Low_complexity 1 21 0 977 124 7 7 chrY 14638175 14638312 -36875272 - AluSq/x SINE Alu -175 138 2 1302 223 17 30 chrY 14638507 14638803 -36874781 - AluJo SINE Alu -20 292 1 1805 208 76 2 chrY 14639010 14639419 -36874165 + Tigger2 DNA MER2_type 2280 2718 0 195 361 21 56 chrY 14639437 14639581 -36874003 + L2 LINE L2 3134 3272 0 32 57 0 0 chrY 14639605 14639658 -36873926 + AT_rich Low_complexity Low_complexity 1 53 0 624 299 84 46 chrY 14639881 14640922 -36872662 + L1MEc LINE L1 691 1771 -4625 1752 191 10 0 chrY 14641100 14641409 -36872175 + AluJb SINE Alu 1 312 0 2360 67 0 7 chrY 14641427 14641725 -36871859 - AluY SINE Alu -15 296 1 677 289 58 31 chrY 14641749 14642043 -36871541 - MLT1A2 LTR MaLR -64 310 9 816 208 57 47 chrY 14642114 14642247 -36871337 + AluJb SINE Alu 1 138 -174 257 68 23 0 chrY 14642247 14642291 -36871293 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 816 208 57 47 chrY 14642291 14642369 -36871215 + AluJb SINE Alu 138 214 -98 1119 221 149 75 chrY 14642953 14643556 -36870028 + LTR1B LTR ERV1 1 648 -178 1644 162 16 0 chrY 14643771 14644074 -36869510 - L1P LINE L1 -2551 3595 3288 302 266 105 27 chrY 14644393 14644649 -36868935 + MLT1C LTR MaLR 94 386 -119 1083 190 0 0 chrY 14644679 14644858 -36868726 - AluSx SINE Alu -133 179 1 237 197 33 33 chrY 14644860 14644921 -36868663 + MLT1C LTR MaLR 401 461 -6 222 235 0 74 chrY 14644927 14644976 -36868608 + (CATATA)n Simple_repeat Simple_repeat 4 46 -32 2431 202 50 22 chrY 14644976 14645561 -36868023 + MER7C DNA MER2_type 1 601 -1 222 235 0 74 chrY 14645561 14645592 -36867992 + (CATATA)n Simple_repeat Simple_repeat 46 78 0 366 214 0 0 chrY 14646012 14646096 -36867488 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 267 217 58 8 chrY 14646132 14646252 -36867332 + (TA)n Simple_repeat Simple_repeat 2 127 0 24 77 0 0 chrY 14646294 14646346 -36867238 + AT_rich Low_complexity Low_complexity 1 52 0 196 170 32 21 chrY 14646352 14646446 -36867138 + (TA)n Simple_repeat Simple_repeat 1 95 0 351 189 63 13 chrY 14646459 14646618 -36866966 + (TA)n Simple_repeat Simple_repeat 1 167 0 371 121 0 0 chrY 14646619 14646677 -36866907 - Tigger3(Golem) DNA MER2_type -56 2973 2916 4363 131 23 3 chrY 14646852 14647560 -36866024 - LTR30 LTR ERV1 0 722 1 8884 70 12 2 chrY 14647560 14648743 -36864841 - HERV30 LTR ERV1 0 8257 7064 31065 76 9 1 chrY 14648745 14655419 -36858165 - HERV30 LTR ERV1 -1462 6795 1 2845 128 14 5 chrY 14655419 14656044 -36857540 - LTR30 LTR ERV1 0 722 6 402 293 90 38 chrY 14656901 14657113 -36856471 + L1M4 LINE L1 2487 2709 -3437 492 143 20 20 chrY 14657118 14657216 -36856368 + MER4A LTR ERV1 1 98 -566 800 218 21 11 chrY 14657216 14657459 -36856125 + MER4A LTR ERV1 261 564 -100 1031 179 44 125 chrY 14657461 14657942 -36855642 - LTR7 LTR ERV1 -7 443 2 2161 172 0 73 chrY 14658217 14658681 -36854903 - Tigger2a DNA MER2_type -3 431 2 303 308 206 51 chrY 14658696 14659163 -36854421 - L2 LINE L2 -1041 2273 1735 1414 203 66 20 chrY 14659191 14659473 -36854111 - MLT1A1 LTR MaLR 0 365 63 1807 158 96 9 chrY 14659473 14659808 -36853776 + THE1B LTR MaLR 1 364 0 1414 203 66 20 chrY 14659808 14659874 -36853710 - MLT1A1 LTR MaLR -302 63 1 847 338 148 47 chrY 14659966 14660749 -36852835 - L2 LINE L2 -1716 1598 667 1626 202 3 7 chrY 14660749 14661051 -36852533 + AluJo SINE Alu 1 301 -11 847 338 148 47 chrY 14661051 14661387 -36852197 - L2 LINE L2 -2647 667 366 192 320 115 26 chrY 14661417 14661573 -36852011 - L2 LINE L2 -3035 279 110 7582 28 0 3 chrY 14661776 14662938 -36850646 + L1PA3 LINE L1 5006 6152 -3 4104 98 17 3 chrY 14663731 14664314 -36849270 + LTR10C LTR ERV1 1 591 0 655 295 23 20 chrY 14664549 14664898 -36848686 + L1MA9 LINE L1 5933 6282 -30 222 253 46 11 chrY 14664913 14665000 -36848584 + (CATATA)n Simple_repeat Simple_repeat 2 91 0 1666 190 3 0 chrY 14665920 14666204 -36847380 - AluSx SINE Alu -27 285 1 1212 222 41 10 chrY 14667001 14667294 -36846290 - AluJo SINE Alu -6 306 5 226 301 30 30 chrY 14667414 14667547 -36846037 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 363 96 0 0 chrY 14667749 14667801 -36845783 + (CA)n Simple_repeat Simple_repeat 1 52 0 287 224 2 2 chrY 14667854 14667927 -36845657 - MLT1D LTR MaLR -330 175 111 400 281 29 7 chrY 14668016 14668155 -36845429 - MIR SINE MIR 0 262 121 341 75 19 0 chrY 14668613 14668666 -36844918 + (TA)n Simple_repeat Simple_repeat 2 55 0 1494 230 3 19 chrY 14669007 14669324 -36844260 - AluJo SINE Alu 0 312 1 214 93 23 23 chrY 14670659 14670702 -36842882 + (TA)n Simple_repeat Simple_repeat 1 43 0 1154 235 35 105 chrY 14670837 14671352 -36842232 - LTR8 LTR ERV1 0 691 213 25 0 0 0 chrY 14671355 14671380 -36842204 + AT_rich Low_complexity Low_complexity 1 25 0 48 60 0 0 chrY 14671540 14671623 -36841961 + AT_rich Low_complexity Low_complexity 1 83 0 1085 228 38 10 chrY 14671674 14671963 -36841621 - LTR24B LTR ERV1 -7 569 273 227 221 39 13 chrY 14672049 14672126 -36841458 + (TA)n Simple_repeat Simple_repeat 2 80 0 1314 192 50 4 chrY 14672280 14672561 -36841023 - LTR24B LTR ERV1 -282 294 1 * 1457 168 36 123 chrY 14672561 14672672 -36840912 + LTR49 LTR ERV1 30 149 -446 1813 178 3 0 chrY 14672672 14672958 -36840626 + AluSx SINE Alu 1 287 -25 1457 168 36 123 chrY 14672958 14673291 -36840293 + LTR49 LTR ERV1 149 435 -160 2259 201 38 59 chrY 14673368 14673495 -36840089 + LTR8A LTR ERV1 34 162 -565 1308 204 0 83 chrY 14673495 14673833 -36839751 - AluJb SINE Alu -2 310 1 2259 201 38 59 chrY 14673833 14674412 -36839172 + LTR8A LTR ERV1 162 725 -2 441 149 14 0 chrY 14674425 14674499 -36839085 + LTR49 LTR ERV1 518 592 -3 574 246 6 47 chrY 14674580 14674751 -36838833 + MLT1A2 LTR MaLR 1 164 -210 3733 151 25 22 chrY 14674784 14674828 -36838756 + LTR8 LTR ERV1 1 43 -648 4785 160 4 8 chrY 14674828 14675609 -36837975 - LTR17 LTR ERV1 0 780 3 3733 151 25 22 chrY 14675609 14676253 -36837331 + LTR8 LTR ERV1 43 691 0 359 243 129 21 chrY 14676253 14676392 -36837192 + MLT1A2 LTR MaLR 205 358 -32 773 267 79 38 chrY 14676528 14676906 -36836678 - LTR24B LTR ERV1 -7 569 165 1490 137 43 39 chrY 14676906 14677162 -36836422 + AluY SINE Alu 1 257 -54 773 267 79 38 chrY 14677162 14677263 -36836321 - LTR24B LTR ERV1 -411 165 70 2545 178 10 21 chrY 14677402 14677886 -36835698 - MER61E LTR ERV1 -90 479 1 1259 235 56 34 chrY 14678121 14678478 -36835106 - MLT1A1 LTR MaLR 0 365 1 1442 218 42 3 chrY 14678940 14679225 -36834359 - AluJb SINE Alu -16 296 1 3927 101 24 4 chrY 14680446 14680999 -36832585 + LTR6A LTR ERV1 1 564 0 20643 212 25 6 chrY 14681001 14687098 -36826486 + HERVS71 LTR ERV1 4 7850 -1128 457 139 0 0 chrY 14687098 14687170 -36826414 + LTR6A LTR ERV1 493 564 0 1964 145 6 10 chrY 14687375 14687686 -36825898 + AluSx SINE Alu 1 310 -2 290 274 147 71 chrY 14687705 14687957 -36825627 - MER92B LTR ERV1 -8 628 358 1263 225 0 18 chrY 14688059 14688335 -36825249 + LTR39 LTR ERV1 265 535 -248 1886 111 33 45 chrY 14688335 14688692 -36824892 + LTR10D LTR ERV1 1 353 -160 1594 142 92 12 chrY 14688692 14689061 -36824523 - LTR7 LTR ERV1 0 450 1 1152 104 0 0 chrY 14689061 14689221 -36824363 + LTR10D LTR ERV1 349 508 -5 1297 177 8 16 chrY 14689226 14689480 -36824104 + LTR39 LTR ERV1 532 783 0 22 0 0 0 chrY 14689816 14689838 -36823746 + AT_rich Low_complexity Low_complexity 1 22 0 4551 107 48 0 chrY 14690595 14691284 -36822300 - LTR30 LTR ERV1 0 722 1 233 106 47 35 chrY 14691679 14691764 -36821820 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 229 178 44 33 chrY 14692002 14692092 -36821492 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 1872 134 3 72 chrY 14692394 14692729 -36820855 - AluSx SINE Alu 0 312 1 36 53 0 0 chrY 14693612 14693669 -36819915 + AT_rich Low_complexity Low_complexity 1 57 0 1071 234 51 4 chrY 14694193 14694428 -36819156 - AluJb SINE Alu -61 251 6 188 119 0 24 chrY 14694537 14694579 -36819005 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 224 215 54 27 chrY 14694598 14694747 -36818837 + (TAGA)n Simple_repeat Simple_repeat 2 154 0 21 0 0 0 chrY 14695381 14695402 -36818182 + AT_rich Low_complexity Low_complexity 1 21 0 364 315 170 33 chrY 14695431 14695914 -36817670 + L1ME3 LINE L1 3890 4438 -1708 319 261 15 8 chrY 14695917 14696047 -36817537 + L1ME3 LINE L1 4534 4664 -1482 29 47 0 0 chrY 14696271 14696314 -36817270 + AT_rich Low_complexity Low_complexity 1 43 0 2829 124 24 32 chrY 14696421 14696914 -36816670 - LTR15 LTR ERV1 -4 489 1 1625 198 10 10 chrY 14696944 14697252 -36816332 + AluSq SINE Alu 1 308 -5 270 317 27 22 chrY 14698027 14698251 -36815333 + L1ME3 LINE L1 5725 5949 -213 2850 241 46 32 chrY 14698405 14699340 -36814244 + MER45B DNA AcHobo 13 960 -80 861 282 0 0 chrY 14699350 14699556 -36814028 - MER58A DNA MER1_type -6 218 13 234 0 0 0 chrY 14699907 14699933 -36813651 + (A)n Simple_repeat Simple_repeat 1 26 0 228 264 23 0 chrY 14700780 14700867 -36812717 + (TA)n Simple_repeat Simple_repeat 1 89 0 40480 51 6 4 chrY 14700876 14707013 -36806571 - L1PA4 LINE L1 -3 6152 1 1278 241 0 17 chrY 14707078 14707393 -36806191 + AluJb SINE Alu 5 314 0 23 0 0 0 chrY 14707429 14707452 -36806132 + AT_rich Low_complexity Low_complexity 1 23 0 353 255 13 40 chrY 14707452 14707478 -36806106 + (TA)n Simple_repeat Simple_repeat 1 26 -119 1398 186 71 23 chrY 14707478 14707832 -36805752 - THE1C LTR MaLR 0 375 5 353 255 13 40 chrY 14707832 14707954 -36805630 + (TA)n Simple_repeat Simple_repeat 26 145 0 1258 234 9 2 chrY 14707954 14708314 -36805270 + MER47B DNA MER2_type 1 418 0 321 47 0 0 chrY 14708324 14708367 -36805217 + (TG)n Simple_repeat Simple_repeat 2 44 0 359 255 21 25 chrY 14708367 14708500 -36805084 + (TA)n Simple_repeat Simple_repeat 1 133 -504 2061 185 11 42 chrY 14708500 14708948 -36804636 - Tigger2a DNA MER2_type 0 434 1 359 255 21 25 chrY 14708948 14709007 -36804577 + (TA)n Simple_repeat Simple_repeat 133 637 0 237 108 0 0 chrY 14709450 14709487 -36804097 + (TG)n Simple_repeat Simple_repeat 2 38 0 27 73 0 0 chrY 14709671 14709726 -36803858 + AT_rich Low_complexity Low_complexity 1 55 0 391 268 22 17 chrY 14709804 14709983 -36803601 + (TA)n Simple_repeat Simple_repeat 1 180 0 197 132 26 0 chrY 14710059 14710097 -36803487 + (CA)n Simple_repeat Simple_repeat 2 40 0 253 285 177 16 chrY 14710610 14710796 -36802788 - MIR SINE MIR -19 243 28 210 37 0 0 chrY 14711103 14711130 -36802454 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 297 51 0 0 chrY 14711605 14711644 -36801940 + (CA)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chrY 14711664 14711694 -36801890 + AT_rich Low_complexity Low_complexity 1 30 0 1452 183 39 32 chrY 14711694 14711979 -36801605 - AluSq SINE Alu -26 287 1 234 118 68 25 chrY 14712104 14712265 -36801319 + (TA)n Simple_repeat Simple_repeat 2 169 0 31 44 0 0 chrY 14712318 14712363 -36801221 + AT_rich Low_complexity Low_complexity 1 45 0 390 203 39 0 chrY 14712463 14712591 -36800993 + (TA)n Simple_repeat Simple_repeat 2 134 0 1146 213 144 18 chrY 14712770 14713151 -36800433 - MSTB1 LTR MaLR 0 432 4 1188 174 28 71 chrY 14713499 14713833 -36799751 - AluJo SINE Alu 0 336 15 21 0 0 0 chrY 14714303 14714324 -36799260 + AT_rich Low_complexity Low_complexity 1 21 0 1238 263 3 24 chrY 14714407 14714704 -36798880 - AluJo SINE Alu -21 291 1 225 0 0 0 chrY 14714732 14714757 -36798827 + (T)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chrY 14715465 14715491 -36798093 + AT_rich Low_complexity Low_complexity 1 26 0 1048 256 67 11 chrY 14715491 14715659 -36797925 - AluJb SINE Alu -1 301 109 243 0 0 0 chrY 14715659 14715686 -36797898 + (TG)n Simple_repeat Simple_repeat 2 28 0 1048 256 67 11 chrY 14715686 14715802 -36797782 - AluJb SINE Alu -193 109 1 189 200 60 0 chrY 14715836 14715886 -36797698 + MIR SINE MIR 210 262 0 806 132 38 38 chrY 14716795 14716954 -36796630 - THE1C LTR MaLR 0 375 217 742 139 0 0 chrY 14716961 14717069 -36796515 + AluSg/x SINE Alu 177 284 -26 354 23 0 0 chrY 14717069 14717112 -36796472 + (CATA)n Simple_repeat Simple_repeat 2 44 0 965 134 17 12 chrY 14717133 14717305 -36796279 - THE1C LTR MaLR -202 173 1 408 111 0 0 chrY 14717603 14717666 -36795918 + (TG)n Simple_repeat Simple_repeat 2 64 0 280 214 0 14 chrY 14718538 14718608 -36794976 - LTR40b LTR ERVL -326 136 68 1653 216 0 7 chrY 14718629 14718934 -36794650 - AluJb SINE Alu -4 308 6 722 258 205 7 chrY 14719777 14720060 -36793524 + MLT1A2 LTR MaLR 1 339 -35 1006 251 35 35 chrY 14720208 14720523 -36793061 + MER77 LTR ERV1 274 588 -17 5782 101 40 0 chrY 14720896 14722158 -36791426 + L1PA7 LINE L1 4856 6153 -1 682 245 5 27 chrY 14722236 14722420 -36791164 - FRAM SINE Alu 0 176 1 1628 164 79 15 chrY 14723362 14723703 -36789881 - MLT1B LTR MaLR -4 386 24 1702 157 49 14 chrY 14723873 14724159 -36789425 + AluSx SINE Alu 1 296 -16 249 143 66 77 chrY 14724170 14724261 -36789323 - L1MC4 LINE L1 -1339 6703 6614 * 254 210 86 0 chrY 14724181 14724262 -36789322 + L1MC4 LINE L1 6615 6702 -1340 301 235 123 0 chrY 14724262 14724343 -36789241 + L1MC4 LINE L1 6613 6703 -1339 1174 199 61 91 chrY 14724501 14724798 -36788786 + AluSx SINE Alu 1 288 -14 1525 199 3 7 chrY 14724925 14725212 -36788372 + AluJo SINE Alu 1 286 -26 1416 60 0 34 chrY 14725264 14725560 -36788024 + (GAAA)n Simple_repeat Simple_repeat 4 287 0 512 246 0 0 chrY 14725984 14726106 -36787478 + FRAM SINE Alu 47 168 -8 26 50 0 0 chrY 14726905 14726945 -36786639 + AT_rich Low_complexity Low_complexity 1 40 0 595 136 8 25 chrY 14726970 14727088 -36786496 + L1PA16 LINE L1 6048 6163 -3 300 288 91 41 chrY 14729545 14729865 -36783719 - L1ME3A LINE L1 -250 5920 5585 1458 222 7 0 chrY 14729875 14730172 -36783412 - AluJo SINE Alu -13 299 1 207 0 0 0 chrY 14730227 14730250 -36783334 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 597 160 43 0 chrY 14730449 14730567 -36783017 - FLAM_A SINE Alu 0 139 18 1800 154 13 35 chrY 14730954 14731314 -36782270 + AluSx SINE Alu 1 312 0 378 322 159 21 chrY 14731410 14731699 -36781885 + MLT1E LTR MaLR 252 580 -13 652 178 0 0 chrY 14731944 14732051 -36781533 + U6 snRNA snRNA 1 107 0 14873 143 16 11 chrY 14732051 14735396 -36778188 + L1PA8A LINE L1 2561 5917 -214 2213 63 7 17 chrY 14735396 14735725 -36777859 - AluY SINE Alu 0 311 1 14873 143 16 11 chrY 14735725 14735835 -36777749 + L1PA8A LINE L1 5917 6025 -106 887 173 50 25 chrY 14735838 14736040 -36777544 - MLT1B LTR MaLR -161 229 23 1383 183 57 11 chrY 14736213 14736475 -36777109 + AluSx SINE Alu 1 274 -38 355 231 22 0 chrY 14736489 14736580 -36777004 + LTR22 LTR ERVK 315 407 -173 220 167 0 33 chrY 14736603 14736663 -36776921 + (TATG)n Simple_repeat Simple_repeat 3 60 0 396 59 0 0 chrY 14736665 14736716 -36776868 + (TG)n Simple_repeat Simple_repeat 2 52 0 1603 192 3 7 chrY 14736828 14737115 -36776469 + AluJo SINE Alu 1 286 -26 324 143 0 0 chrY 14737118 14737174 -36776410 + (GGGGA)n Simple_repeat Simple_repeat 5 60 0 745 121 24 30 chrY 14737179 14737345 -36776239 + GA-rich Low_complexity Low_complexity 1 165 0 533 267 87 5 chrY 14737577 14737772 -36775812 + MER20 DNA MER1_type 4 214 -5 2975 189 19 2 chrY 14738548 14739118 -36774466 + LTR22 LTR ERVK 1 580 0 192 217 0 0 chrY 14739251 14739297 -36774287 + (TATG)n Simple_repeat Simple_repeat 2 47 0 21 36 0 0 chrY 14739297 14739325 -36774259 + AT_rich Low_complexity Low_complexity 1 28 0 180 98 20 39 chrY 14739598 14739649 -36773935 + (TA)n Simple_repeat Simple_repeat 1 50 0 315 0 0 0 chrY 14739764 14739799 -36773785 + (TG)n Simple_repeat Simple_repeat 2 36 0 1377 206 0 3 chrY 14740207 14740489 -36773095 - Tigger4(Zombi) DNA MER2_type 0 2731 2451 953 169 5 42 chrY 14740497 14740651 -36772933 + MER1B DNA MER1_type 158 305 -2407 2859 0 0 0 chrY 14740651 14740957 -36772627 + AluYa5 SINE Alu 1 306 -5 953 169 5 42 chrY 14740957 14740991 -36772593 + MER1B DNA MER1_type 305 339 0 626 144 8 16 chrY 14740991 14741110 -36772474 - Tigger4(Zombi) DNA MER2_type -335 2396 2279 1995 135 57 9 chrY 14741111 14741567 -36772017 - LTR19B LTR ERV1 0 580 1 564 186 93 8 chrY 14741567 14741696 -36771888 - Tigger4(Zombi) DNA MER2_type -449 2282 2143 1165 167 127 4 chrY 14741698 14741974 -36771610 - Tigger4(Zombi) DNA MER2_type -2156 575 266 1019 156 330 5 chrY 14741982 14742146 -36771438 - AluSc SINE Alu 0 299 190 1479 98 0 0 chrY 14742146 14742340 -36771244 - AluY SINE Alu -22 289 96 1019 156 330 5 chrY 14742340 14742399 -36771185 - AluSc SINE Alu -109 190 3 898 168 0 0 chrY 14742400 14742543 -36771041 - AluSq/x SINE Alu -166 146 4 1133 215 0 54 chrY 14742550 14742829 -36770755 - Tigger4(Zombi) DNA MER2_type -2459 272 9 1991 121 321 92 chrY 14743151 14743994 -36769590 - LTR12 LTR ERV1 0 2032 52 3925 124 17 8 chrY 14744002 14744639 -36768945 - HERV9 LTR ERV1 0 8399 7757 1858 189 115 61 chrY 14744634 14745470 -36768114 - Harlequin LTR ERV1 -5176 1720 840 * 5684 102 14 8 chrY 14745471 14746331 -36767253 - Harlequin LTR ERV1 -3455 4944 4080 19411 124 15 9 chrY 14746338 14749456 -36764128 - Harlequin LTR ERV1 -5260 3139 1 1692 125 209 179 chrY 14749456 14750018 -36763566 - LTR12 LTR ERV1 -135 579 1 252 0 0 0 chrY 14750089 14750117 -36763467 + (T)n Simple_repeat Simple_repeat 1 28 0 1231 173 37 8 chrY 14752240 14752480 -36761104 - MER50 LTR ERV1 -2 732 486 1658 134 36 46 chrY 14752480 14752558 -36761026 + THE1B LTR MaLR 1 78 -286 6611 126 22 2 chrY 14752558 14753543 -36760041 + LTR13 LTR ERVK 1 1005 -2 1658 134 36 46 chrY 14753543 14753771 -36759813 + THE1B LTR MaLR 78 304 -60 591 178 0 8 chrY 14753787 14753916 -36759668 - L1P LINE L1 -4021 2125 1998 680 200 8 0 chrY 14753927 14754057 -36759527 - AluSq/x SINE Alu -182 131 1 1091 195 39 58 chrY 14754076 14754384 -36759200 - L1P LINE L1 -1980 4166 3865 260 343 98 60 chrY 14754426 14754945 -36758639 + L2 LINE L2 1300 1838 -1476 1798 177 10 7 chrY 14755339 14755639 -36757945 + AluSx SINE Alu 1 301 -11 19863 143 18 23 chrY 14756315 14756782 -36756802 + HERV9 LTR ERV1 565 1033 -7366 186 273 26 52 chrY 14756782 14756859 -36756725 - L3 LINE CR1 -42 1535 1461 19863 143 18 23 chrY 14756859 14759977 -36753607 + HERV9 LTR ERV1 1033 8399 0 1125 196 86 68 chrY 14759968 14760248 -36753336 + LTR12 LTR ERV1 1 285 -429 * 279 214 0 14 chrY 14760252 14760322 -36753262 + LTR30 LTR ERV1 556 624 -98 667 210 25 0 chrY 14760322 14760441 -36753143 + LTR12 LTR ERV1 359 480 -234 1330 189 0 0 chrY 14760442 14760654 -36752930 + AluY SINE Alu 71 282 -29 1936 114 0 53 chrY 14761087 14761412 -36752172 + AluY SINE Alu 1 309 0 49 71 0 0 chrY 14762227 14762325 -36751259 + AT_rich Low_complexity Low_complexity 1 98 0 291 234 30 24 chrY 14762859 14763026 -36750558 + CT-rich Low_complexity Low_complexity 1 168 0 1029 244 103 11 chrY 14763033 14763295 -36750289 - AluJb SINE Alu -15 287 2 449 34 17 0 chrY 14763926 14763985 -36749599 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 917 56 0 8 chrY 14764000 14764085 -36749499 + (TTTC)n Simple_repeat Simple_repeat 1 208 0 917 56 0 8 chrY 14764085 14764210 -36749374 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 605 69 54 0 chrY 14764292 14764422 -36749162 + (TCTA)n Simple_repeat Simple_repeat 4 140 0 2761 191 14 5 chrY 14765078 14765668 -36747916 - L1MA4 LINE L1 -6 6294 5700 874 150 10 15 chrY 14765845 14766029 -36747555 - L1M3 LINE L1 -430 5738 5555 1120 163 56 128 chrY 14766424 14766744 -36746840 + AluSq SINE Alu 2 298 -5 486 0 0 0 chrY 14766853 14766907 -36746677 + (TA)n Simple_repeat Simple_repeat 1 54 0 1956 146 0 3 chrY 14766910 14767198 -36746386 - AluY SINE Alu -22 289 3 1830 192 2 47 chrY 14767384 14767607 -36745977 - MLT1B LTR MaLR -1 389 191 1423 215 3 39 chrY 14767607 14767919 -36745665 - AluJb SINE Alu -11 301 1 1830 192 2 47 chrY 14767919 14768102 -36745482 - MLT1B LTR MaLR -199 191 1 21 36 0 0 chrY 14768270 14768298 -36745286 + AT_rich Low_complexity Low_complexity 1 28 0 763 225 0 32 chrY 14768846 14769033 -36744551 - AluJb SINE Alu -7 305 125 369 114 53 0 chrY 14769051 14769165 -36744419 + (TA)n Simple_repeat Simple_repeat 2 121 0 31 0 0 0 chrY 14769165 14769196 -36744388 + AT_rich Low_complexity Low_complexity 1 31 0 193 198 23 0 chrY 14769196 14769282 -36744302 + (TA)n Simple_repeat Simple_repeat 2 89 0 249 276 0 0 chrY 14769285 14769372 -36744212 - L1MC4 LINE L1 -1340 6702 6616 1181 141 36 125 chrY 14769555 14769859 -36743725 + L1MA9 LINE L1 5467 5743 -569 541 151 32 25 chrY 14769909 14770261 -36743323 + (TCTA)n Simple_repeat Simple_repeat 1 354 0 201 124 56 34 chrY 14770276 14770365 -36743219 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1258 259 39 51 chrY 14770397 14770883 -36742701 + L1MA9 LINE L1 5795 6274 -38 544 204 44 0 chrY 14771174 14771287 -36742297 + FLAM_C SINE Alu 15 132 -11 2201 129 6 0 chrY 14772048 14772359 -36741225 + AluSp SINE Alu 1 313 0 1095 220 0 27 chrY 14772614 14772837 -36740747 + AluJo SINE Alu 1 217 -95 659 220 0 57 chrY 14773242 14773383 -36740201 - FLAM_C SINE Alu 0 133 1 180 0 0 0 chrY 14773436 14773456 -36740128 + (TTA)n Simple_repeat Simple_repeat 3 22 0 6627 42 1 0 chrY 14773456 14774252 -36739332 - L1PA3 LINE L1 -18 6137 5341 2773 37 0 0 chrY 14774251 14774604 -36738980 + L1PA3 LINE L1 4968 5320 -826 * 1169 189 34 71 chrY 14776652 14776975 -36736609 + L1MA9 LINE L1 5996 6306 -6 6280 124 15 14 chrY 14777326 14779610 -36733974 + L1PA4 LINE L1 11 2290 -4180 6280 43 1 1 chrY 14779610 14780376 -36733208 + L1PA4 LINE L1 5702 6467 -3 6280 124 15 14 chrY 14780376 14782763 -36730821 + L1PA4 LINE L1 2290 5668 -802 207 0 0 0 chrY 14782763 14782786 -36730798 + (CA)n Simple_repeat Simple_repeat 2 24 0 6280 124 15 14 chrY 14782786 14783588 -36729996 + L1PA4 LINE L1 5668 6467 -3 387 281 92 37 chrY 14784106 14784270 -36729314 - MER58B DNA MER1_type -1 340 168 202 279 0 0 chrY 14784541 14784602 -36728982 + T-rich Low_complexity Low_complexity 4 64 0 21 0 0 0 chrY 14785352 14785373 -36728211 + AT_rich Low_complexity Low_complexity 1 21 0 548 256 8 0 chrY 14785385 14785510 -36728074 - AluJb SINE Alu -13 299 174 744 33 0 0 chrY 14785510 14785601 -36727983 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 444 171 11 23 chrY 14785601 14785689 -36727895 - L1MC3 LINE L1 -373 7412 7326 410 138 0 11 chrY 14785689 14785776 -36727808 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 1415 254 66 7 chrY 14787119 14787544 -36726040 - L1MC3 LINE L1 -289 7496 7047 195 306 99 27 chrY 14787900 14788011 -36725573 + MIR SINE MIR 85 203 -59 990 247 0 41 chrY 14788100 14788367 -36725217 + AluJo SINE Alu 33 288 -24 28 0 0 0 chrY 14788388 14788416 -36725168 + AT_rich Low_complexity Low_complexity 1 28 0 2216 190 53 26 chrY 14789839 14790333 -36723251 + MLT2B3 LTR ERVL 1 507 -47 228 186 45 28 chrY 14790388 14790565 -36723019 + GA-rich Low_complexity Low_complexity 1 180 0 276 234 32 11 chrY 14790579 14790673 -36722911 + GA-rich Low_complexity Low_complexity 1 96 0 297 0 0 0 chrY 14790842 14790875 -36722709 + (TG)n Simple_repeat Simple_repeat 2 34 0 269 135 0 0 chrY 14791445 14791482 -36722102 - AluSc SINE Alu -47 252 216 183 80 0 0 chrY 14791486 14791511 -36722073 + (A)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chrY 14791659 14791683 -36721901 + AT_rich Low_complexity Low_complexity 1 24 0 1917 144 10 0 chrY 14792620 14792918 -36720666 + AluY SINE Alu 1 301 -10 2620 103 149 145 chrY 14793528 14794233 -36719351 + LTR12 LTR ERV1 57 714 0 28 0 0 0 chrY 14794820 14794848 -36718736 + AT_rich Low_complexity Low_complexity 1 28 0 1404 194 3 74 chrY 14794885 14795195 -36718389 + AluJb SINE Alu 1 288 -24 391 273 77 16 chrY 14795395 14795578 -36718006 + MER3 DNA MER1_type 7 200 -9 643 275 65 13 chrY 14795590 14795899 -36717685 + L1M4 LINE L1 2162 2486 -3660 1430 218 7 0 chrY 14796359 14796648 -36716936 - AluSx SINE Alu -11 291 1 395 227 0 0 chrY 14796974 14797049 -36716535 - LTR8A LTR ERV1 0 727 653 1095 209 133 42 chrY 14797055 14797318 -36716266 + AluSx SINE Alu 10 296 -16 2186 177 92 77 chrY 14797318 14797968 -36715616 - LTR8A LTR ERV1 -67 660 1 1797 238 116 42 chrY 14798061 14798493 -36715091 + MER50 LTR ERV1 10 511 -223 1896 166 30 38 chrY 14798493 14798860 -36714724 - THE1B LTR MaLR 0 364 1 1797 238 116 42 chrY 14798860 14799100 -36714484 + MER50 LTR ERV1 511 732 -2 252 0 0 0 chrY 14801223 14801251 -36712333 + (A)n Simple_repeat Simple_repeat 1 28 0 240 250 0 0 chrY 14801322 14801374 -36712210 + LTR30 LTR ERV1 1 52 -670 1585 128 249 218 chrY 14801374 14801907 -36711677 + LTR12 LTR ERV1 53 714 0 * 20531 124 15 9 chrY 14801884 14805002 -36708582 + HERV9 LTR ERV1 1 3139 -5260 6020 102 13 8 chrY 14805009 14805870 -36707714 + HERV9 LTR ERV1 4080 4944 -3455 2072 190 112 59 chrY 14805871 14806707 -36706877 + Harlequin LTR ERV1 840 1720 -5176 * 4153 124 17 8 chrY 14806702 14807339 -36706245 + Harlequin LTR ERV1 7757 8399 0 1758 156 58 219 chrY 14807339 14808190 -36705394 + LTR12 LTR ERV1 1 714 0 1222 204 4 57 chrY 14808512 14808791 -36704793 + Tigger4(Zombi) DNA MER2_type 9 272 -2459 893 168 0 0 chrY 14808798 14808941 -36704643 + AluSq/x SINE Alu 4 146 -167 1006 156 330 5 chrY 14808942 14809001 -36704583 + AluSc SINE Alu 3 42 -257 1480 98 0 0 chrY 14809001 14809195 -36704389 + AluY SINE Alu 96 289 -22 1006 156 330 5 chrY 14809195 14809359 -36704225 + AluSc SINE Alu 42 299 0 1256 167 127 4 chrY 14809367 14809643 -36703941 + Tigger4(Zombi) DNA MER2_type 266 575 -2156 608 186 93 8 chrY 14809645 14809774 -36703810 + Tigger4(Zombi) DNA MER2_type 2143 2282 -449 2112 133 57 9 chrY 14809774 14810230 -36703354 + LTR19B LTR ERV1 1 580 0 665 144 8 16 chrY 14810231 14810356 -36703228 + Tigger4(Zombi) DNA MER2_type 2279 2402 -329 * 1015 169 5 42 chrY 14810350 14810384 -36703200 - MER1B DNA MER1_type -2373 339 305 2867 0 0 0 chrY 14810384 14810690 -36702894 - AluYa5 SINE Alu -5 306 1 1015 169 5 42 chrY 14810690 14810844 -36702740 - MER1B DNA MER1_type -2407 305 158 1465 206 0 3 chrY 14810852 14811134 -36702450 + Tigger4(Zombi) DNA MER2_type 2451 2731 0 315 0 0 0 chrY 14811542 14811577 -36702007 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 98 20 39 chrY 14811692 14811743 -36701841 + (TA)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chrY 14812016 14812044 -36701540 + AT_rich Low_complexity Low_complexity 1 28 0 192 217 0 0 chrY 14812044 14812090 -36701494 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2978 189 19 2 chrY 14812223 14812793 -36700791 - LTR22 LTR ERVK 0 580 1 592 267 87 5 chrY 14813569 14813764 -36699820 - MER20 DNA MER1_type -5 214 4 709 123 25 31 chrY 14813996 14814158 -36699426 + CT-rich Low_complexity Low_complexity 1 161 0 324 143 0 0 chrY 14814163 14814219 -36699365 + (TCCCC)n Simple_repeat Simple_repeat 5 60 0 1585 192 3 7 chrY 14814222 14814509 -36699075 - AluJo SINE Alu -26 286 1 432 55 0 0 chrY 14814621 14814676 -36698908 + (CA)n Simple_repeat Simple_repeat 2 56 0 220 167 0 33 chrY 14814678 14814738 -36698846 + (CATA)n Simple_repeat Simple_repeat 3 60 0 379 231 22 0 chrY 14814761 14814852 -36698732 - LTR22 LTR ERVK -173 407 315 1367 183 57 11 chrY 14814866 14815128 -36698456 - AluSx SINE Alu -38 274 1 960 179 57 24 chrY 14815291 14815503 -36698081 + MLT1B LTR MaLR 11 229 -161 15711 144 16 12 chrY 14815506 14815616 -36697968 - L1PA8A LINE L1 -106 6025 5917 2222 63 7 17 chrY 14815616 14815945 -36697639 + AluY SINE Alu 1 311 0 15711 144 16 12 chrY 14815945 14819291 -36694293 - L1PA8A LINE L1 -214 5917 2561 688 178 0 0 chrY 14819291 14819398 -36694186 - U6 snRNA snRNA 0 107 1 475 335 148 19 chrY 14819643 14819953 -36693631 - MLT1E LTR MaLR -13 580 231 253 23 23 47 chrY 14820058 14820101 -36693483 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1763 162 14 3 chrY 14820104 14820388 -36693196 - AluSx SINE Alu -25 287 1 589 160 43 0 chrY 14820775 14820893 -36692691 + FLAM_A SINE Alu 18 139 0 207 0 0 0 chrY 14821092 14821115 -36692469 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 1428 222 7 0 chrY 14821170 14821467 -36692117 + AluJo SINE Alu 1 299 -13 377 288 91 41 chrY 14821477 14821797 -36691787 + L1ME3A LINE L1 5585 5920 -250 241 275 0 0 chrY 14821844 14821913 -36691671 + L1ME3A LINE L1 6092 6160 -10 595 136 8 25 chrY 14824254 14824372 -36689212 - L1PA16 LINE L1 -3 6163 6048 26 50 0 0 chrY 14824397 14824437 -36689147 + AT_rich Low_complexity Low_complexity 1 40 0 509 246 0 0 chrY 14825236 14825358 -36688226 - FRAM SINE Alu -8 168 47 254 286 162 9 chrY 14825456 14825561 -36688023 - MER20 DNA MER1_type -95 124 4 1367 42 6 32 chrY 14825782 14826093 -36687491 + (TTTC)n Simple_repeat Simple_repeat 1 480 0 1507 199 3 7 chrY 14826145 14826432 -36687152 - AluJo SINE Alu -26 286 1 1164 199 61 91 chrY 14826559 14826856 -36686728 - AluSx SINE Alu -14 288 1 301 235 123 0 chrY 14827014 14827095 -36686489 - L1MC4 LINE L1 -1339 6703 6613 272 143 66 77 chrY 14827096 14827187 -36686397 + L1MC4 LINE L1 6614 6703 -1339 1680 157 49 14 chrY 14827198 14827484 -36686100 - AluSx SINE Alu -16 296 1 1733 166 79 15 chrY 14827654 14827997 -36685587 + MLT1B LTR MaLR 24 388 -2 680 245 5 27 chrY 14828937 14829121 -36684463 + FRAM SINE Alu 1 176 0 5801 101 13 0 chrY 14829199 14830461 -36683123 - L1PA7 LINE L1 -1 6153 4856 1105 251 35 35 chrY 14830834 14831149 -36682435 - MER77 LTR ERV1 -17 588 274 814 258 205 7 chrY 14831297 14831580 -36682004 - MLT1A2 LTR MaLR -35 339 1 1608 216 0 7 chrY 14832423 14832728 -36680856 + AluJb SINE Alu 6 308 -4 297 214 0 14 chrY 14832749 14832819 -36680765 + LTR40b LTR ERVL 68 136 -326 372 119 0 0 chrY 14833691 14833750 -36679834 + (CA)n Simple_repeat Simple_repeat 2 60 0 1028 134 17 12 chrY 14834048 14834220 -36679364 + THE1C LTR MaLR 1 173 -202 354 23 0 0 chrY 14834241 14834284 -36679300 + (TATG)n Simple_repeat Simple_repeat 2 44 0 732 139 0 0 chrY 14834284 14834392 -36679192 - AluSg/x SINE Alu -26 286 179 860 132 38 38 chrY 14834399 14834558 -36679026 + THE1C LTR MaLR 217 375 0 189 200 60 0 chrY 14835467 14835517 -36678067 - MIR SINE MIR 0 262 210 1044 256 67 11 chrY 14835551 14835667 -36677917 + AluJb SINE Alu 1 109 -193 243 0 0 0 chrY 14835667 14835694 -36677890 + (CA)n Simple_repeat Simple_repeat 2 28 0 1044 256 67 11 chrY 14835694 14835862 -36677722 + AluJb SINE Alu 109 301 -1 26 0 0 0 chrY 14835862 14835888 -36677696 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chrY 14836598 14836624 -36676960 + (A)n Simple_repeat Simple_repeat 1 26 0 1257 266 3 24 chrY 14836652 14836949 -36676635 + AluJb SINE Alu 1 291 -11 21 0 0 0 chrY 14837032 14837053 -36676531 + AT_rich Low_complexity Low_complexity 1 21 0 1169 174 28 71 chrY 14837523 14837857 -36675727 + AluJo SINE Alu 15 336 0 247 228 172 103 chrY 14837863 14838008 -36675576 + MLT1G LTR MaLR 70 224 -366 231 315 21 35 chrY 14838053 14838196 -36675388 + MLT1G LTR MaLR 411 551 -39 1268 210 144 18 chrY 14838205 14838586 -36674998 + MSTB1 LTR MaLR 4 432 0 390 203 39 0 chrY 14838765 14838893 -36674691 + (TA)n Simple_repeat Simple_repeat 2 134 0 31 44 0 0 chrY 14838993 14839038 -36674546 + AT_rich Low_complexity Low_complexity 1 45 0 234 118 68 25 chrY 14839091 14839252 -36674332 + (TA)n Simple_repeat Simple_repeat 2 169 0 1438 183 39 32 chrY 14839377 14839662 -36673922 + AluSq SINE Alu 1 287 -26 30 0 0 0 chrY 14839662 14839692 -36673892 + AT_rich Low_complexity Low_complexity 1 30 0 279 54 0 0 chrY 14839712 14839749 -36673835 + (TG)n Simple_repeat Simple_repeat 2 38 0 210 37 0 0 chrY 14840224 14840251 -36673333 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 257 285 177 16 chrY 14840558 14840744 -36672840 + MIR SINE MIR 28 243 -19 197 132 26 0 chrY 14841257 14841295 -36672289 + (TG)n Simple_repeat Simple_repeat 2 40 0 391 268 22 17 chrY 14841371 14841550 -36672034 + (TA)n Simple_repeat Simple_repeat 1 180 0 27 73 0 0 chrY 14841628 14841683 -36671901 + AT_rich Low_complexity Low_complexity 1 55 0 237 108 0 0 chrY 14841867 14841904 -36671680 + (CA)n Simple_repeat Simple_repeat 2 38 0 359 256 22 33 chrY 14842360 14842406 -36671178 + (TA)n Simple_repeat Simple_repeat 2 47 -132 2087 185 11 42 chrY 14842406 14842854 -36670730 + Tigger2a DNA MER2_type 1 434 0 359 256 22 33 chrY 14842854 14842987 -36670597 + (TA)n Simple_repeat Simple_repeat 47 179 0 303 49 0 0 chrY 14842987 14843028 -36670556 + (CA)n Simple_repeat Simple_repeat 2 42 0 1341 220 25 11 chrY 14843038 14843398 -36670186 - MER47B DNA MER2_type 0 418 1 353 255 13 40 chrY 14843398 14843520 -36670064 + (TA)n Simple_repeat Simple_repeat 2 121 -25 1396 186 71 23 chrY 14843520 14843874 -36669710 + THE1C LTR MaLR 5 375 0 353 255 13 40 chrY 14843874 14843900 -36669684 + (TA)n Simple_repeat Simple_repeat 121 146 0 23 0 0 0 chrY 14843900 14843923 -36669661 + AT_rich Low_complexity Low_complexity 1 23 0 1255 241 0 17 chrY 14843959 14844284 -36669300 - AluJb SINE Alu 0 324 5 42430 51 6 4 chrY 14844349 14850486 -36663098 + L1PA4 LINE L1 1 6152 -3 228 264 23 0 chrY 14850495 14850582 -36663002 + (TA)n Simple_repeat Simple_repeat 2 90 0 225 0 0 0 chrY 14851429 14851454 -36662130 + (T)n Simple_repeat Simple_repeat 1 25 0 927 286 0 0 chrY 14851801 14852011 -36661573 + MER58A DNA MER1_type 9 218 -6 3133 244 45 32 chrY 14852021 14852968 -36660616 - MER45B DNA AcHobo -80 960 1 313 299 22 61 chrY 14853110 14853388 -36660196 - L1ME3 LINE L1 -213 5949 5683 1582 198 10 10 chrY 14854109 14854417 -36659167 - AluSq SINE Alu -5 308 1 2844 124 24 32 chrY 14854447 14854940 -36658644 + LTR15 LTR ERV1 1 489 -4 29 47 0 0 chrY 14855047 14855090 -36658494 + AT_rich Low_complexity Low_complexity 1 43 0 350 261 15 8 chrY 14855314 14855444 -36658140 - L1ME3 LINE L1 -1482 4664 4534 364 315 170 33 chrY 14855447 14855930 -36657654 - L1ME3 LINE L1 -1708 4438 3890 21 0 0 0 chrY 14855959 14855980 -36657604 + AT_rich Low_complexity Low_complexity 1 21 0 224 215 54 27 chrY 14856614 14856763 -36656821 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 188 119 0 24 chrY 14856782 14856824 -36656760 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 1057 234 51 4 chrY 14856933 14857168 -36656416 + AluJb SINE Alu 6 251 -61 36 53 0 0 chrY 14857692 14857749 -36655835 + AT_rich Low_complexity Low_complexity 1 57 0 1835 134 3 72 chrY 14858632 14858967 -36654617 + AluSx SINE Alu 1 312 0 229 178 44 33 chrY 14859269 14859359 -36654225 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 233 106 47 35 chrY 14859597 14859682 -36653902 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 4550 107 48 0 chrY 14860077 14860766 -36652818 + LTR30 LTR ERV1 1 722 0 22 0 0 0 chrY 14861523 14861545 -36652039 + AT_rich Low_complexity Low_complexity 1 22 0 1408 177 8 16 chrY 14861881 14862135 -36651449 - LTR39 LTR ERV1 0 783 532 1234 108 0 0 chrY 14862138 14862300 -36651284 - LTR10D LTR ERV1 -3 510 349 1737 141 105 12 chrY 14862300 14862669 -36650915 + LTR7 LTR ERV1 1 450 0 * 2062 111 33 45 chrY 14862669 14863026 -36650558 - LTR10D LTR ERV1 -160 353 1 1374 225 0 18 chrY 14863026 14863302 -36650282 - LTR39 LTR ERV1 -248 535 265 376 274 147 71 chrY 14863404 14863656 -36649928 + MER92B LTR ERV1 358 628 -8 1943 145 6 10 chrY 14863675 14863986 -36649598 - AluSx SINE Alu -2 310 1 490 139 0 0 chrY 14864191 14864263 -36649321 - LTR6A LTR ERV1 0 564 493 22308 211 25 6 chrY 14864263 14870360 -36643224 - HERVS71 LTR ERV1 -1128 7850 4 4203 101 24 4 chrY 14870362 14870915 -36642669 - LTR6A LTR ERV1 0 564 1 1402 218 42 3 chrY 14872136 14872421 -36641163 + AluJb SINE Alu 1 296 -16 1419 233 56 31 chrY 14872883 14873239 -36640345 + MLT1A1 LTR MaLR 1 365 0 2754 178 10 21 chrY 14873474 14873958 -36639626 + MER61E LTR ERV1 1 479 -90 970 267 79 38 chrY 14874097 14874198 -36639386 + LTR24B LTR ERV1 70 165 -411 1479 137 43 39 chrY 14874198 14874454 -36639130 - AluY SINE Alu -54 257 1 970 267 79 38 chrY 14874454 14874832 -36638752 + LTR24B LTR ERV1 165 569 -7 416 245 128 22 chrY 14874956 14875107 -36638477 - MLT1A2 LTR MaLR -20 437 205 4050 151 25 22 chrY 14875107 14875751 -36637833 - LTR8 LTR ERV1 0 691 43 5149 161 3 8 chrY 14875751 14876533 -36637051 + LTR17 LTR ERV1 3 780 0 4050 151 25 22 chrY 14876533 14876577 -36637007 - LTR8 LTR ERV1 -648 43 1 640 246 6 47 chrY 14876610 14876781 -36636803 - MLT1A2 LTR MaLR -210 164 1 477 149 14 0 chrY 14876862 14876936 -36636648 - LTR49 LTR ERV1 -3 592 518 2541 199 38 59 chrY 14876949 14877528 -36636056 - LTR8A LTR ERV1 -2 725 162 1273 204 0 83 chrY 14877528 14877866 -36635718 + AluJb SINE Alu 1 310 -2 2541 199 38 59 chrY 14877866 14877993 -36635591 - LTR8A LTR ERV1 -565 162 34 1637 168 36 123 chrY 14878070 14878403 -36635181 - LTR49 LTR ERV1 -160 435 149 1788 178 3 0 chrY 14878403 14878689 -36634895 - AluSx SINE Alu -25 287 1 1637 168 36 123 chrY 14878689 14878800 -36634784 - LTR49 LTR ERV1 -446 149 30 1448 192 50 4 chrY 14878800 14879081 -36634503 + LTR24B LTR ERV1 1 294 -282 227 221 39 13 chrY 14879235 14879312 -36634272 + (TA)n Simple_repeat Simple_repeat 1 79 0 1221 228 38 10 chrY 14879398 14879687 -36633897 + LTR24B LTR ERV1 273 569 -7 47 61 0 0 chrY 14879738 14879820 -36633764 + AT_rich Low_complexity Low_complexity 1 82 0 232 125 25 0 chrY 14879820 14879860 -36633724 + MER4D LTR ERV1 285 325 -547 25 0 0 0 chrY 14879981 14880006 -36633578 + AT_rich Low_complexity Low_complexity 1 25 0 1331 236 35 104 chrY 14880007 14880524 -36633060 + LTR8 LTR ERV1 211 691 0 214 93 23 23 chrY 14880659 14880702 -36632882 + (TA)n Simple_repeat Simple_repeat 1 43 0 1438 230 3 19 chrY 14882037 14882354 -36631230 + AluJo SINE Alu 1 312 0 410 53 18 0 chrY 14882694 14882751 -36630833 + (TA)n Simple_repeat Simple_repeat 2 59 0 388 281 29 7 chrY 14883209 14883348 -36630236 + MIR SINE MIR 121 262 0 313 227 0 0 chrY 14883437 14883503 -36630081 + MLT1D LTR MaLR 113 178 -327 345 100 0 0 chrY 14883563 14883613 -36629971 + (TG)n Simple_repeat Simple_repeat 1 50 0 226 301 30 30 chrY 14883815 14883948 -36629636 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 1333 223 42 11 chrY 14884068 14884355 -36629229 + AluJo SINE Alu 5 300 -2 1639 190 3 0 chrY 14885158 14885442 -36628142 + AluSx SINE Alu 1 285 -27 222 253 46 11 chrY 14886362 14886449 -36627135 + (TATATG)n Simple_repeat Simple_repeat 2 91 0 795 299 22 22 chrY 14886464 14886819 -36626765 - L1MA9 LINE L1 -30 6282 5928 4402 99 17 3 chrY 14887048 14887631 -36625953 - LTR10C LTR ERV1 0 591 1 8070 29 0 43 chrY 14888424 14889590 -36623994 - L1PA3 LINE L1 -3 6152 5006 767 335 148 47 chrY 14889979 14890315 -36623269 + L2 LINE L2 366 667 -2647 1609 199 3 7 chrY 14890315 14890617 -36622967 - AluJo SINE Alu -11 301 1 767 335 148 47 chrY 14890617 14891400 -36622184 + L2 LINE L2 667 1598 -1716 1563 203 66 20 chrY 14891492 14891558 -36622026 + MLT1A1 LTR MaLR 1 63 -302 1984 155 96 9 chrY 14891558 14891893 -36621691 - THE1B LTR MaLR 0 364 1 1563 203 66 20 chrY 14891893 14892175 -36621409 + MLT1A1 LTR MaLR 63 365 0 275 308 206 51 chrY 14892203 14892670 -36620914 + L2 LINE L2 1735 2273 -1041 2372 175 0 73 chrY 14892685 14893149 -36620435 + Tigger2a DNA MER2_type 2 431 -3 1196 179 44 125 chrY 14893424 14893905 -36619679 + LTR7 LTR ERV1 2 443 -7 882 216 21 11 chrY 14893907 14894150 -36619434 - MER4A LTR ERV1 -100 564 261 537 143 20 20 chrY 14894150 14894248 -36619336 - MER4A LTR ERV1 -566 98 1 232 283 90 38 chrY 14894253 14894465 -36619119 - L1M4 LINE L1 -3437 2709 2487 3089 124 14 5 chrY 14895322 14895947 -36617637 + LTR30 LTR ERV1 6 722 0 33178 77 9 1 chrY 14895947 14902619 -36610965 + HERV30 LTR ERV1 1 6795 -1462 9500 70 12 2 chrY 14902621 14903804 -36609780 + HERV30 LTR ERV1 7064 8257 0 4709 138 23 3 chrY 14903804 14904512 -36609072 + LTR30 LTR ERV1 1 722 0 399 121 0 0 chrY 14904687 14904745 -36608839 + Tigger3(Golem) DNA MER2_type 2916 2973 -56 351 189 63 13 chrY 14904746 14904905 -36608679 + (TA)n Simple_repeat Simple_repeat 1 167 0 196 170 32 21 chrY 14904918 14905012 -36608572 + (TA)n Simple_repeat Simple_repeat 2 96 0 24 77 0 0 chrY 14905018 14905070 -36608514 + AT_rich Low_complexity Low_complexity 1 52 0 250 211 57 16 chrY 14905112 14905235 -36608349 + (TA)n Simple_repeat Simple_repeat 2 129 0 366 214 0 0 chrY 14905271 14905355 -36608229 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 222 235 0 74 chrY 14905775 14905806 -36607778 + (TATATG)n Simple_repeat Simple_repeat 4 36 -42 2715 193 55 27 chrY 14905806 14906391 -36607193 - MER7C DNA MER2_type -1 601 1 222 235 0 74 chrY 14906391 14906440 -36607144 + (TATATG)n Simple_repeat Simple_repeat 36 78 0 264 197 33 33 chrY 14906446 14906507 -36607077 - MLT1C LTR MaLR -6 461 401 1070 190 0 0 chrY 14906509 14906688 -36606896 + AluSx SINE Alu 1 179 -133 366 262 137 34 chrY 14906718 14906975 -36606609 - MLT1C LTR MaLR -119 386 90 1786 162 16 0 chrY 14907293 14907596 -36605988 + L1P LINE L1 3288 3595 -2551 1327 219 149 75 chrY 14907811 14908414 -36605170 - LTR1B LTR ERV1 -178 648 1 449 227 64 0 chrY 14908817 14908927 -36604657 + MER57A LTR ERV1 287 403 0 235 244 8 8 chrY 14908931 14909058 -36604526 + (TA)n Simple_repeat Simple_repeat 2 128 0 27112 58 12 3 chrY 14910026 14916098 -36597486 + L1PA3 LINE L1 9 6152 -3 29 47 0 0 chrY 14916156 14916199 -36597385 + AT_rich Low_complexity Low_complexity 1 43 0 319 320 74 34 chrY 14916256 14916431 -36597153 + L1ME LINE L1 981 1162 -5785 203 219 68 41 chrY 14916460 14916533 -36597051 + L3 LINE CR1 524 598 -979 266 319 12 17 chrY 14916925 14917116 -36596468 + L1ME LINE L1 1393 1712 -5235 1854 168 0 23 chrY 14917317 14917626 -36595958 + AluSx SINE Alu 1 302 -10 328 233 15 45 chrY 14917792 14917925 -36595659 + L1ME LINE L1 2916 3044 -4094 407 43 0 0 chrY 14917950 14917997 -36595587 - L1PA2 LINE L1 -57 6098 6052 748 217 77 19 chrY 14918015 14918222 -36595362 + L1PB4 LINE L1 5924 6142 -14 625 297 36 18 chrY 14918599 14918875 -36594709 - L1ME LINE L1 -373 5791 5511 456 299 18 24 chrY 14920049 14920216 -36593368 + MIR SINE MIR 72 237 -25 2340 68 0 10 chrY 14920242 14920553 -36593031 + AluY SINE Alu 1 308 -3 198 209 0 0 chrY 14920553 14920596 -36592988 + (TA)n Simple_repeat Simple_repeat 2 44 0 31 44 0 0 chrY 14920696 14920741 -36592843 + AT_rich Low_complexity Low_complexity 1 45 0 306 73 0 0 chrY 14921873 14921914 -36591670 + (TATG)n Simple_repeat Simple_repeat 2 42 0 802 233 0 0 chrY 14921919 14922069 -36591515 - FRAM SINE Alu -31 145 1 1278 218 22 26 chrY 14922257 14922569 -36591015 - AluJo SINE Alu -1 311 1 207 0 0 0 chrY 14924570 14924593 -36588991 + (CA)n Simple_repeat Simple_repeat 2 24 0 200 194 0 0 chrY 14924593 14924629 -36588955 + GA-rich Low_complexity Low_complexity 1 36 0 384 192 14 14 chrY 14925209 14925282 -36588302 + AluJ/FLAM SINE Alu 3 75 -227 2366 143 8 13 chrY 14925282 14925659 -36587925 + THE1C LTR MaLR 1 375 0 711 223 7 0 chrY 14925662 14925801 -36587783 + FRAM SINE Alu 26 165 -11 21 57 0 0 chrY 14926615 14926650 -36586934 + AT_rich Low_complexity Low_complexity 1 35 0 225 240 10 39 chrY 14927215 14927319 -36586265 + (CATA)n Simple_repeat Simple_repeat 4 104 0 294 29 0 0 chrY 14927685 14927720 -36585864 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chrY 14927836 14927861 -36585723 + AT_rich Low_complexity Low_complexity 1 25 0 1357 205 52 0 chrY 14929188 14929456 -36584128 + AluJb SINE Alu 1 282 -30 1213 205 116 16 chrY 14930014 14930272 -36583312 - AluJo SINE Alu -18 284 1 23 0 0 0 chrY 14930802 14930825 -36582759 + AT_rich Low_complexity Low_complexity 1 23 0 304 119 0 0 chrY 14931314 14931356 -36582228 - Alu SINE Alu -260 43 2 1117 307 73 16 chrY 14931357 14931807 -36581777 + MER82 DNA MER2_type 146 621 -32 1819 168 26 32 chrY 14932216 14932581 -36581003 - THE1C LTR MaLR 0 457 1 1486 193 11 25 chrY 14933326 14933611 -36579973 + AluJo SINE Alu 2 282 -30 26 30 0 0 chrY 14933789 14933822 -36579762 + AT_rich Low_complexity Low_complexity 1 33 0 404 162 9 0 chrY 14935049 14935154 -36578430 + CT-rich Low_complexity Low_complexity 2 107 0 1792 159 28 0 chrY 14935445 14935735 -36577849 - AluSc SINE Alu -11 298 1 1865 113 9 64 chrY 14935891 14936217 -36577367 + AluY SINE Alu 1 308 -3 1869 148 0 0 chrY 14936363 14936710 -36576874 - AluSg SINE Alu 0 347 1 429 220 14 103 chrY 14936710 14936880 -36576704 - L1M4 LINE L1 -830 5814 5664 1411 193 3 44 chrY 14936880 14937195 -36576389 - AluSq SINE Alu 0 303 1 429 220 14 103 chrY 14937195 14937237 -36576347 - L1M4 LINE L1 -980 5664 5620 376 281 95 30 chrY 14937415 14937678 -36575906 - L1M4 LINE L1 -1648 4996 4717 280 284 115 32 chrY 14937732 14937950 -36575634 - L1M4 LINE L1 -2019 4625 4390 1608 187 0 66 chrY 14938023 14938387 -36575197 - MLT1B LTR MaLR -45 345 6 35 63 0 0 chrY 14938574 14938637 -36574947 + AT_rich Low_complexity Low_complexity 1 63 0 30 69 0 0 chrY 14938912 14938970 -36574614 + AT_rich Low_complexity Low_complexity 1 58 0 239 211 22 56 chrY 14938973 14939153 -36574431 + (TTATA)n Simple_repeat Simple_repeat 3 176 0 * 241 215 15 52 chrY 14939090 14939225 -36574359 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 360 240 29 18 chrY 14939303 14939474 -36574110 + (TA)n Simple_repeat Simple_repeat 1 173 0 860 235 83 114 chrY 14939503 14940078 -36573506 - L1M4 LINE L1 -4542 2104 1513 1339 240 31 19 chrY 14940078 14940437 -36573147 - MLT1A1 LTR MaLR -2 363 1 860 235 83 114 chrY 14940437 14940666 -36572918 - L1M4 LINE L1 -5133 1513 1279 1579 191 21 3 chrY 14940666 14940948 -36572636 - AluJb SINE Alu -25 287 1 860 235 83 114 chrY 14940948 14941399 -36572185 - L1M4 LINE L1 -5367 1279 879 238 316 26 51 chrY 14941588 14941705 -36571879 - L1M4 LINE L1 -5843 699 586 594 230 0 0 chrY 14943068 14943181 -36570403 + FLAM_C SINE Alu 6 118 -25 1850 109 4 4 chrY 14943789 14944046 -36569538 + AluY SINE Alu 39 295 -16 1880 138 11 11 chrY 14944451 14944734 -36568850 + AluSg SINE Alu 1 283 -27 239 253 0 46 chrY 14944734 14944821 -36568763 - L1MC4 LINE L1 -1346 6696 6614 32 26 0 0 chrY 14944821 14944860 -36568724 + AT_rich Low_complexity Low_complexity 1 39 0 1434 176 16 12 chrY 14945128 14945383 -36568201 - AluSx SINE Alu -32 280 25 3769 171 3 18 chrY 14945844 14946562 -36567022 + L1PA13 LINE L1 5457 6163 0 333 47 0 0 chrY 14947560 14947603 -36565981 + (CA)n Simple_repeat Simple_repeat 2 44 0 6349 96 8 0 chrY 14948184 14949393 -36564191 + L1PA7 LINE L1 4937 6153 -1 316 283 51 14 chrY 14949878 14950016 -36563568 - L1MA10 LINE L1 -3 6331 6189 216 154 39 0 chrY 14950110 14950162 -36563422 + T-rich Low_complexity Low_complexity 6 59 0 5725 52 1 0 chrY 14950164 14950874 -36562710 - L1PA5 LINE L1 -11 6143 5433 6808 47 1 1 chrY 14950874 14951740 -36561844 + L1P LINE L1 3001 3866 -2280 831 253 105 43 chrY 14951755 14952718 -36560866 - L1ME2 LINE L1 -242 5922 4876 1900 155 3 0 chrY 14952752 14953043 -36560541 + AluSx SINE Alu 1 292 -20 632 36 12 0 chrY 14953044 14953127 -36560457 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 1347 170 40 64 chrY 14953665 14954019 -36559565 - MER4A LTR ERV1 0 664 261 440 188 31 10 chrY 14954019 14954115 -36559469 - MER4A LTR ERV1 -566 98 1 355 188 31 50 chrY 14955049 14955209 -36558375 + (TTATA)n Simple_repeat Simple_repeat 1 157 0 265 306 210 16 chrY 14955634 14955758 -36557826 - MER5A DNA MER1_type -7 182 35 660 278 44 29 chrY 14955937 14956142 -36557442 + MER20 DNA MER1_type 7 214 -5 182 314 191 0 chrY 14956182 14956287 -36557297 + L2 LINE L2 2771 2895 -419 1415 170 8 0 chrY 14956640 14956887 -36556697 + AluSx SINE Alu 33 281 -31 576 77 0 0 chrY 14956890 14956968 -36556616 + (TAAAA)n Simple_repeat Simple_repeat 2 79 0 2794 205 39 15 chrY 14957671 14957792 -36555792 - LTR26 LTR ERV1 0 603 486 1631 179 58 28 chrY 14957792 14958156 -36555428 - THE1C LTR MaLR 0 375 1 2794 205 39 15 chrY 14958156 14958623 -36554961 - LTR26 LTR ERV1 -117 486 1 184 316 38 13 chrY 14959112 14959191 -36554393 - L2 LINE L2 -9 3304 3224 27 0 0 0 chrY 14959530 14959557 -36554027 + AT_rich Low_complexity Low_complexity 1 27 0 1122 240 10 10 chrY 14959590 14959882 -36553702 + AluJo SINE Alu 21 312 0 2462 174 7 93 chrY 14959962 14960566 -36553018 - MER4B LTR ERV1 -58 552 1 1613 204 0 0 chrY 14960800 14961123 -36552461 - AluSx SINE Alu 0 326 4 2422 157 135 60 chrY 14961440 14961994 -36551590 + LTR4 LTR ERV1 1 596 0 1630 214 118 31 chrY 14961995 14962114 -36551470 + L1MC3 LINE L1 7221 7328 -457 2623 183 85 0 chrY 14962114 14962621 -36550963 + MER41C LTR ERV1 5 554 0 1630 214 118 31 chrY 14962621 14963010 -36550574 + L1MC3 LINE L1 7328 7773 -12 1115 222 22 30 chrY 14963044 14963314 -36550270 + AluJo SINE Alu 33 300 -12 1781 174 3 0 chrY 14964334 14964632 -36548952 - AluSx SINE Alu -13 299 1 261 0 0 0 chrY 14964708 14964737 -36548847 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chrY 14965257 14965278 -36548306 + AT_rich Low_complexity Low_complexity 1 21 0 394 331 104 38 chrY 14965664 14966057 -36547527 + L2 LINE L2 2559 2977 -337 234 246 45 141 chrY 14966080 14966279 -36547305 + L2 LINE L2 3089 3268 -45 2148 218 51 16 chrY 14966395 14966946 -36546638 + L1PB4 LINE L1 5582 6148 -8 300 111 0 0 chrY 14967190 14967235 -36546349 + (CA)n Simple_repeat Simple_repeat 2 46 0 203 220 20 0 chrY 14967235 14967285 -36546299 + (TA)n Simple_repeat Simple_repeat 1 51 0 1465 318 59 14 chrY 14967299 14968265 -36545319 - L1M4 LINE L1 -2989 3157 2148 1186 312 47 18 chrY 14968274 14968846 -36544738 - L1ME1 LINE L1 -5 6161 5574 316 156 46 0 chrY 14969088 14969197 -36544387 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 181 353 66 16 chrY 14970132 14970254 -36543330 + L2 LINE L2 2951 3078 -194 989 219 82 23 chrY 14970621 14970738 -36542846 + AluJo SINE Alu 5 114 -198 231 36 0 0 chrY 14970738 14970766 -36542818 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 989 219 82 23 chrY 14970766 14970904 -36542680 + AluJo SINE Alu 114 275 -37 926 228 16 0 chrY 14970930 14971119 -36542465 + AluJo SINE Alu 84 275 -37 1951 161 69 0 chrY 14971332 14971681 -36541903 - THE1C LTR MaLR -2 373 1 1871 196 40 11 chrY 14972931 14973288 -36540296 + L1PB3 LINE L1 5675 6049 -105 1671 178 4 4 chrY 14973288 14973569 -36540015 + AluSq SINE Alu 1 281 -32 1871 196 40 11 chrY 14973569 14973660 -36539924 + L1PB3 LINE L1 6049 6136 -18 2680 134 62 40 chrY 14974358 14974889 -36538695 - MER41A LTR ERV1 -1 553 11 394 188 71 0 chrY 14975465 14975550 -36538034 - L1MA7 LINE L1 -310 5981 5891 4455 80 3 13 chrY 14975550 14975766 -36537818 + LTR10C LTR ERV1 1 218 -373 3266 132 28 22 chrY 14975766 14976311 -36537273 + LTR14 LTR ERVK 1 548 0 4455 80 3 13 chrY 14976311 14976691 -36536893 + LTR10C LTR ERV1 218 591 0 4545 144 26 22 chrY 14977313 14978120 -36535464 - L1PA12 LINE L1 -2 6166 5357 313 226 0 121 chrY 14978411 14978535 -36535049 - L1MC4 LINE L1 -1339 6703 6595 1111 159 22 9 chrY 14979619 14979846 -36533738 + L1MA8 LINE L1 6057 6286 -5 21 0 0 0 chrY 14979846 14979867 -36533717 + AT_rich Low_complexity Low_complexity 1 21 0 556 311 95 33 chrY 14979872 14980177 -36533407 + MLT1G LTR MaLR 59 382 -208 222 37 0 0 chrY 14980451 14980478 -36533106 + (CA)n Simple_repeat Simple_repeat 1 27 0 26 64 0 0 chrY 14981056 14981103 -36532481 + AT_rich Low_complexity Low_complexity 1 47 0 38 75 0 0 chrY 14981647 14981727 -36531857 + AT_rich Low_complexity Low_complexity 1 80 0 1299 252 3 10 chrY 14982491 14982804 -36530780 + AluJb SINE Alu 1 311 -1 2198 202 58 7 chrY 14982814 14983265 -36530319 - MER66B LTR ERV1 -10 476 3 349 265 0 0 chrY 14983867 14983950 -36529634 + L1MC4 LINE L1 6614 6696 -1346 222 213 0 0 chrY 14984215 14984262 -36529322 + A-rich Low_complexity Low_complexity 2 48 0 21 0 0 0 chrY 14984753 14984774 -36528810 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 14985494 14985515 -36528069 + AT_rich Low_complexity Low_complexity 1 21 0 1099 194 16 16 chrY 14985582 14985824 -36527760 - L1P LINE L1 -1407 4739 4498 634 198 11 0 chrY 14985897 14986074 -36527510 + (CAT)n Simple_repeat Simple_repeat 1 179 0 527 226 6 0 chrY 14986111 14986275 -36527309 + (CAT)n Simple_repeat Simple_repeat 1 165 0 1965 129 0 7 chrY 14987061 14987348 -36526236 - AluSc SINE Alu -3 306 22 21 0 0 0 chrY 14987913 14987934 -36525650 + AT_rich Low_complexity Low_complexity 1 21 0 874 245 10 10 chrY 14988669 14988869 -36524715 - AluJb SINE Alu -26 286 87 4869 57 0 0 chrY 14988916 14989536 -36524048 - L1P LINE L1 -2228 3918 3299 6158 44 0 0 chrY 14989536 14990282 -36523302 + L1PA3 LINE L1 5404 6152 -3 22 35 0 0 chrY 14990296 14990325 -36523259 + AT_rich Low_complexity Low_complexity 1 29 0 286 258 124 11 chrY 14991496 14991585 -36521999 - MER5A DNA MER1_type 0 189 91 772 252 88 44 chrY 14991642 14991978 -36521606 - L1MA7 LINE L1 -10 6290 5922 2502 109 5 3 chrY 14992511 14992888 -36520696 - L1PB1 LINE L1 0 6151 5774 220 113 0 57 chrY 14992903 14992956 -36520628 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 21576 99 3 3 chrY 14992965 14996831 -36516753 - L1PA6 LINE L1 0 6154 2235 12772 156 14 35 chrY 14996916 14997711 -36515873 - L1PA6 LINE L1 -3828 2318 1508 2031 139 0 13 chrY 14997711 14998021 -36515563 - AluY SINE Alu -5 306 1 12772 156 14 35 chrY 14998021 14999583 -36514001 - L1PA6 LINE L1 -4638 1508 11 225 0 0 0 chrY 15000069 15000094 -36513490 + (CA)n Simple_repeat Simple_repeat 2 26 0 1883 172 32 0 chrY 15000409 15000757 -36512827 - MLT1B LTR MaLR -8 382 24 399 133 0 0 chrY 15000806 15000866 -36512718 - MLT1B LTR MaLR -307 83 24 2167 140 57 5 chrY 15000957 15001329 -36512255 + L1PA13 LINE L1 5772 6162 -1 3145 115 8 33 chrY 15001531 15001795 -36511789 + MER9 LTR ERVK 1 247 -264 2170 127 0 0 chrY 15001795 15002095 -36511489 - AluSg SINE Alu -10 300 1 3145 115 8 33 chrY 15002095 15002350 -36511234 + MER9 LTR ERVK 247 507 -4 1852 112 109 12 chrY 15002807 15003138 -36510446 - L1PA13 LINE L1 -4 6159 5797 1621 177 7 30 chrY 15003318 15003623 -36509961 + AluSx SINE Alu 6 303 -9 24 32 0 0 chrY 15004494 15004525 -36509059 + AT_rich Low_complexity Low_complexity 1 31 0 225 211 0 0 chrY 15004639 15004691 -36508893 - L1PA14 LINE L1 -131 6030 5979 391 49 16 0 chrY 15004693 15004754 -36508830 + L1PA15 LINE L1 6101 6162 -3 21 0 0 0 chrY 15004921 15004942 -36508642 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chrY 15005641 15005685 -36507899 + AT_rich Low_complexity Low_complexity 1 44 0 1857 186 11 24 chrY 15005738 15006110 -36507474 + MLT1B LTR MaLR 24 390 0 480 186 6 3 chrY 15006114 15006281 -36507303 + MLT1B LTR MaLR 162 377 -13 192 158 0 0 chrY 15006330 15006368 -36507216 + (TA)n Simple_repeat Simple_repeat 1 38 0 313 261 34 11 chrY 15006370 15006458 -36507126 + L1MC4 LINE L1 6614 6703 -1339 * 344 216 34 11 chrY 15006393 15006481 -36507103 - L1MC4 LINE L1 -1339 6703 6614 273 266 0 0 chrY 15006562 15006626 -36506958 - MSTC LTR MaLR -117 311 248 28 0 0 0 chrY 15007098 15007126 -36506458 + AT_rich Low_complexity Low_complexity 1 28 0 1854 219 50 89 chrY 15007361 15007738 -36505846 - L1MB4 LINE L1 -2 6178 5841 1867 151 7 13 chrY 15007738 15008043 -36505541 - AluSq SINE Alu -10 303 1 1854 219 50 89 chrY 15008043 15008386 -36505198 - L1MB4 LINE L1 -339 5841 5486 565 197 60 0 chrY 15008421 15008538 -36505046 - AluJo SINE Alu -176 136 13 1489 251 34 14 chrY 15008729 15009143 -36504441 - MSTC LTR MaLR -4 424 3 257 180 29 8 chrY 15009354 15009423 -36504161 - MLT2B3 LTR ERVL 0 515 455 1114 209 3 118 chrY 15009468 15009799 -36503785 + AluJb SINE Alu 1 293 -9 2366 203 34 23 chrY 15009837 15010147 -36503437 - MLT2B3 LTR ERVL -35 508 212 477 47 0 0 chrY 15010147 15010211 -36503373 + (TG)n Simple_repeat Simple_repeat 2 65 0 2366 203 34 23 chrY 15010211 15010418 -36503166 - MLT2B3 LTR ERVL -331 212 9 201 318 153 12 chrY 15011519 15011689 -36501895 + L2 LINE L2 3116 3309 -4 892 249 9 18 chrY 15011794 15012015 -36501569 - Tigger3(Golem) DNA MER2_type -39 2990 2772 559 270 44 0 chrY 15012011 15012148 -36501436 - Tigger3(Golem) DNA MER2_type -2886 143 1 * 704 216 0 0 chrY 15012968 15013107 -36500477 + AluJb SINE Alu 158 296 -16 816 275 5 0 chrY 15013168 15013357 -36500227 - MLT2B3 LTR ERVL -46 508 319 265 314 10 10 chrY 15013638 15013740 -36499844 + GA-rich Low_complexity Low_complexity 6 107 0 2428 140 56 9 chrY 15013942 15014405 -36499179 + L1MA3 LINE L1 5821 6305 0 291 104 0 0 chrY 15014505 15014553 -36499031 + (CA)n Simple_repeat Simple_repeat 2 49 0 928 267 102 35 chrY 15015103 15015643 -36497941 + L1ME2 LINE L1 5581 6156 -8 25 0 0 0 chrY 15015723 15015748 -36497836 + AT_rich Low_complexity Low_complexity 1 25 0 916 201 16 0 chrY 15016221 15016410 -36497174 - L1PB4 LINE L1 0 6156 5965 919 168 6 24 chrY 15016413 15016580 -36497004 - MER1B DNA MER1_type 0 339 176 3285 184 21 35 chrY 15016609 15017332 -36496252 - L1PB4 LINE L1 -185 5971 5259 437 33 33 0 chrY 15017488 15017549 -36496035 - L1PA4 LINE L1 -4 6151 6089 22 0 0 0 chrY 15017731 15017753 -36495831 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chrY 15017998 15018036 -36495548 + AT_rich Low_complexity Low_complexity 1 38 0 231 294 186 0 chrY 15018174 15018378 -36495206 - HAL1 LINE L1 -982 1525 1284 1541 221 0 0 chrY 15018411 15018705 -36494879 - AluJb SINE Alu -18 294 1 714 82 0 43 chrY 15018710 15018955 -36494629 - AluSc SINE Alu 0 335 2 1524 201 0 38 chrY 15019642 15019955 -36493629 - AluJb SINE Alu -11 301 1 228 222 16 16 chrY 15020022 15020085 -36493499 + (TTA)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chrY 15020789 15020810 -36492774 + AT_rich Low_complexity Low_complexity 1 21 0 2698 128 90 0 chrY 15020811 15021255 -36492329 - LTR19A LTR ERV1 -2 484 1 189 171 0 0 chrY 15021606 15021641 -36491943 + CT-rich Low_complexity Low_complexity 2 36 0 5936 108 11 9 chrY 15021692 15023173 -36490411 - L1PA7 LINE L1 -3 6151 4667 8728 157 15 32 chrY 15023173 15024820 -36488764 + L1P LINE L1 702 2321 -3825 1855 186 9 0 chrY 15024839 15025188 -36488396 - L1PB3 LINE L1 -2 6152 5801 545 258 18 137 chrY 15025248 15025272 -36488312 + MLT1A2 LTR MaLR 2 27 -347 327 25 0 0 chrY 15025272 15025312 -36488272 + (CA)n Simple_repeat Simple_repeat 2 41 0 545 258 18 137 chrY 15025312 15025649 -36487935 + MLT1A2 LTR MaLR 27 324 -50 498 156 21 10 chrY 15025650 15025746 -36487838 + MER4A LTR ERV1 1 97 -567 * 1638 164 8 22 chrY 15025743 15026096 -36487488 + MER4A LTR ERV1 257 663 -1 3474 154 49 6 chrY 15026682 15027311 -36486273 - L1PA11 LINE L1 -6 6168 5513 339 78 0 0 chrY 15027424 15027475 -36486109 + (TG)n Simple_repeat Simple_repeat 2 52 0 3329 152 59 3 chrY 15030168 15030742 -36482842 - MER4B LTR ERV1 -2 608 3 247 202 20 0 chrY 15030744 15030843 -36482741 + (TA)n Simple_repeat Simple_repeat 1 101 0 245 242 36 30 chrY 15030865 15031030 -36482554 + (TATATG)n Simple_repeat Simple_repeat 2 167 0 * 432 215 35 17 chrY 15030917 15031390 -36482194 + (TA)n Simple_repeat Simple_repeat 1 481 0 2356 90 0 3 chrY 15032581 15032893 -36480691 - AluY SINE Alu 0 311 1 369 205 0 0 chrY 15032928 15033006 -36480578 - MER6 DNA MER2_type -4 861 784 1106 204 74 30 chrY 15033006 15033276 -36480308 + AluJo SINE Alu 1 282 -30 3220 213 60 30 chrY 15033294 15033389 -36480195 - MER6 DNA MER2_type -70 795 704 1740 134 30 33 chrY 15033389 15033688 -36479896 - AluSq SINE Alu -15 298 1 3220 213 60 30 chrY 15033688 15034363 -36479221 - MER6 DNA MER2_type -161 704 2 1713 168 45 28 chrY 15034405 15034762 -36478822 + THE1B LTR MaLR 1 363 -1 269 354 25 34 chrY 15034966 15035203 -36478381 - MLT1I LTR MaLR -67 342 108 1233 222 7 24 chrY 15037603 15037891 -36475693 + AluJo SINE Alu 1 283 -19 21 57 0 0 chrY 15037935 15037970 -36475614 + AT_rich Low_complexity Low_complexity 1 35 0 182 317 73 24 chrY 15038833 15038956 -36474628 + L2 LINE L2 2437 2565 -749 599 187 66 86 chrY 15039037 15039235 -36474349 + MLT1B LTR MaLR 4 197 -193 328 95 16 16 chrY 15039237 15039300 -36474284 + (TC)n Simple_repeat Simple_repeat 2 64 0 680 241 0 0 chrY 15039302 15039443 -36474141 + MLT1B LTR MaLR 187 327 -63 1224 190 0 9 chrY 15039964 15040185 -36473399 + MLT1A1 LTR MaLR 1 219 -146 1316 233 93 24 chrY 15040185 15040605 -36472979 - L1MC3 LINE L1 -1895 5890 5442 645 219 26 7 chrY 15040625 15040780 -36472804 + MLT1A1 LTR MaLR 207 364 -1 2232 85 0 0 chrY 15041238 15041557 -36472027 + AluY SINE Alu 1 319 0 3027 173 33 6 chrY 15041739 15042249 -36471335 + MER1A DNA MER1_type 6 529 0 1199 209 150 66 chrY 15042365 15042572 -36471012 - MLT1D LTR MaLR -2 503 315 1201 209 106 11 chrY 15042572 15042845 -36470739 - AluJo SINE Alu -3 299 1 1199 209 150 66 chrY 15042845 15043078 -36470506 - MLT1D LTR MaLR -190 315 26 1241 273 10 0 chrY 15043496 15043831 -36469753 - AluJo SINE Alu 0 302 1 42 20 0 0 chrY 15043833 15043882 -36469702 + AT_rich Low_complexity Low_complexity 1 49 0 568 168 32 170 chrY 15043931 15044040 -36469544 + L1MA9 LINE L1 5900 6022 -277 3499 133 8 47 chrY 15044040 15044664 -36468920 - LTR43 LTR ERV1 0 602 3 568 168 32 170 chrY 15044664 15044851 -36468733 + L1MA9 LINE L1 6022 6256 -43 1814 188 49 46 chrY 15044863 15045397 -36468187 + MLT2A2 LTR ERVL 1 554 0 1320 256 19 6 chrY 15045637 15045997 -36467587 + MLT1A1 LTR MaLR 1 365 0 2577 189 71 25 chrY 15046651 15046854 -36466730 - LTR29 LTR ERV1 0 622 430 1835 156 45 28 chrY 15046854 15047212 -36466372 - THE1B LTR MaLR 0 364 1 2577 189 71 25 chrY 15047212 15047601 -36465983 - LTR29 LTR ERV1 -192 430 3 1422 199 57 46 chrY 15048620 15048991 -36464593 - THE1C LTR MaLR 0 375 1 623 159 38 0 chrY 15049359 15049491 -36464093 - L1MA7 LINE L1 0 6291 6155 204 233 23 23 chrY 15049673 15049716 -36463868 - MER5A DNA MER1_type -140 49 7 674 137 69 15 chrY 15050925 15051056 -36462528 - Tigger5 DNA MER2_type -84 2239 2102 207 0 0 0 chrY 15051056 15051079 -36462505 + (A)n Simple_repeat Simple_repeat 1 23 0 621 297 64 30 chrY 15051204 15051500 -36462084 + MER20B DNA MER1_type 40 345 -438 180 0 0 0 chrY 15051850 15051870 -36461714 + (CAA)n Simple_repeat Simple_repeat 2 21 0 589 174 103 71 chrY 15052797 15052981 -36460603 + L1MA9 LINE L1 5844 6033 -279 1014 203 25 0 chrY 15053193 15053429 -36460155 + L1MA7 LINE L1 6044 6285 -6 1735 162 4 0 chrY 15053511 15053813 -36459771 + AluSx SINE Alu 6 308 0 1436 168 8 0 chrY 15053830 15054074 -36459510 + AluSq SINE Alu 1 246 -67 291 137 0 0 chrY 15054121 15054172 -36459412 + AluSq SINE Alu 250 300 -2 315 0 0 0 chrY 15056756 15056791 -36456793 + (TG)n Simple_repeat Simple_repeat 2 36 0 1565 110 31 82 chrY 15057021 15057339 -36456245 + AluY SINE Alu 1 302 -9 6018 146 75 48 chrY 15058382 15058561 -36455023 - LTR19-int LTR ERV1 -1565 4021 3848 1816 52 4 0 chrY 15058561 15058823 -36454761 + L1PA3 LINE L1 5915 6177 0 6018 146 75 48 chrY 15058823 15060007 -36453577 - LTR19-int LTR ERV1 -1738 3848 2620 396 207 18 51 chrY 15060007 15060125 -36453459 - L1M LINE L1 -778 5388 5281 304 344 57 37 chrY 15060169 15060413 -36453171 + L1ME3A LINE L1 5913 6161 -9 23 97 0 0 chrY 15061256 15061328 -36452256 + AT_rich Low_complexity Low_complexity 1 72 0 1024 274 43 14 chrY 15061701 15062052 -36451532 + MLT1A1 LTR MaLR 1 361 -4 427 81 14 14 chrY 15062090 15062164 -36451420 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 440 302 87 40 chrY 15062375 15062696 -36450888 - L1MC/D LINE L1 -2067 5741 5406 1477 186 24 21 chrY 15062967 15063258 -36450326 - AluJo SINE Alu -16 296 5 1362 179 101 18 chrY 15063630 15064002 -36449582 + MSTA LTR MaLR 1 426 -2 204 176 59 0 chrY 15064705 15064807 -36448777 + (TA)n Simple_repeat Simple_repeat 1 108 0 21 36 0 0 chrY 15064951 15064979 -36448605 + AT_rich Low_complexity Low_complexity 1 28 0 305 263 241 53 chrY 15066196 15066329 -36447255 + MER20 DNA MER1_type 62 219 0 1067 225 69 54 chrY 15066631 15066850 -36446734 - MSTB1 LTR MaLR 0 432 205 1480 198 14 10 chrY 15066850 15067023 -36446561 - AluJb SINE Alu -12 300 124 215 31 31 0 chrY 15067023 15067055 -36446529 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1480 198 14 10 chrY 15067055 15067174 -36446410 - AluJb SINE Alu -188 124 7 1067 225 69 54 chrY 15067174 15067287 -36446297 - MSTB1 LTR MaLR -227 205 95 22 0 0 0 chrY 15068108 15068130 -36445454 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chrY 15068525 15068561 -36445023 + AT_rich Low_complexity Low_complexity 1 36 0 1392 218 14 0 chrY 15068570 15068859 -36444725 - AluJb SINE Alu -19 293 1 1646 198 9 3 chrY 15068948 15069271 -36444313 + MLT1A1 LTR MaLR 1 325 -40 745 182 11 0 chrY 15069631 15069903 -36443681 + CT-rich Low_complexity Low_complexity 1 275 0 1152 177 0 25 chrY 15070883 15071081 -36442503 - AluJo SINE Alu -25 287 95 4893 123 9 5 chrY 15072594 15073355 -36440229 - L1PA7 LINE L1 -1357 4789 4026 1909 125 37 0 chrY 15073342 15074576 -36439008 + L1PA7 LINE L1 4766 6150 -4 * 1664 187 101 20 chrY 15074872 15075268 -36438316 - MSTA LTR MaLR 0 428 1 286 25 0 0 chrY 15075389 15075429 -36438155 - L1PA3 LINE L1 -4 6151 6112 279 0 0 0 chrY 15076226 15076257 -36437327 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 852 224 0 93 chrY 15076684 15076921 -36436663 - AluJo SINE Alu -97 215 1 224 393 19 0 chrY 15077074 15077181 -36436403 + MER5A DNA MER1_type 7 115 -74 815 246 0 0 chrY 15077832 15077999 -36435585 + AluJb SINE Alu 127 293 -19 4597 106 39 101 chrY 15078214 15078883 -36434701 + LTR12 LTR ERV1 5 609 -217 198 103 0 0 chrY 15078883 15078912 -36434672 + (TG)n Simple_repeat Simple_repeat 2 30 0 4597 106 39 101 chrY 15078912 15079117 -36434467 + LTR12 LTR ERV1 609 825 -1 1841 142 11 0 chrY 15079117 15079392 -36434192 + AluSq SINE Alu 27 304 -9 926 123 0 0 chrY 15079955 15080085 -36433499 + AluY SINE Alu 1 130 -181 453 261 0 0 chrY 15080098 15080240 -36433344 + (CATATA)n Simple_repeat Simple_repeat 2 143 0 1014 73 5 170 chrY 15080240 15080446 -36433138 + AluY SINE Alu 137 308 -3 1818 142 6 41 chrY 15080764 15081080 -36432504 - AluSx SINE Alu -4 308 4 5876 59 1 0 chrY 15081134 15081881 -36431703 - L1PA4 LINE L1 -3 6152 5405 330 279 0 29 chrY 15082336 15082476 -36431108 + (TATATG)n Simple_repeat Simple_repeat 2 137 0 * 334 286 19 0 chrY 15082397 15082551 -36431033 + (TA)n Simple_repeat Simple_repeat 2 158 0 265 254 41 6 chrY 15082567 15082736 -36430848 + (TA)n Simple_repeat Simple_repeat 2 176 0 437 172 0 54 chrY 15082738 15082831 -36430753 - AluJ/FLAM SINE Alu -224 88 1 255 167 0 36 chrY 15083510 15083594 -36429990 + (TA)n Simple_repeat Simple_repeat 2 82 0 2337 57 40 3 chrY 15083826 15084124 -36429460 + AluY SINE Alu 1 309 -2 21 0 0 0 chrY 15085201 15085222 -36428362 + AT_rich Low_complexity Low_complexity 1 21 0 592 279 54 11 chrY 15086040 15086310 -36427274 + L1MDa LINE L1 27 471 -6069 638 271 39 77 chrY 15086392 15086524 -36427060 + MLT2B1 LTR ERVL 13 149 -371 1821 153 27 3 chrY 15086524 15086818 -36426766 - AluSq SINE Alu -12 301 1 638 271 39 77 chrY 15086818 15087181 -36426403 + MLT2B1 LTR ERVL 149 418 -102 702 243 19 38 chrY 15087183 15087625 -36425959 + MLT2B1 LTR ERVL 267 451 -69 1686 166 7 4 chrY 15087625 15087933 -36425651 + AluSg SINE Alu 1 309 0 702 243 19 38 chrY 15087933 15088002 -36425582 + MLT2B1 LTR ERVL 451 520 0 308 320 40 29 chrY 15088163 15088337 -36425247 + L1MDa LINE L1 592 1074 -5466 530 230 127 60 chrY 15088361 15088572 -36425012 + L1MDa LINE L1 1214 1409 -5131 2111 130 0 25 chrY 15088572 15088888 -36424696 + AluSc SINE Alu 1 308 -1 530 230 127 60 chrY 15088888 15089113 -36424471 + L1MDa LINE L1 1409 1679 -4861 496 271 66 0 chrY 15089619 15089770 -36423814 - MLT1E LTR MaLR -432 161 1 372 122 37 0 chrY 15089787 15089869 -36423715 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 720 130 5 49 chrY 15089898 15090083 -36423501 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 413 207 17 22 chrY 15090143 15090322 -36423262 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 2393 166 48 78 chrY 15090727 15091190 -36422394 - MER1A DNA MER1_type -2174 526 80 1583 196 10 0 chrY 15091190 15091481 -36422103 - AluSq SINE Alu -4 309 16 2393 166 48 78 chrY 15091481 15091559 -36422025 - MER1A DNA MER1_type -2620 80 1 1061 277 127 36 chrY 15093211 15093630 -36419954 + MLT1C LTR MaLR 1 457 -10 308 315 33 11 chrY 15094149 15094241 -36419343 - L2 LINE L2 -38 3234 3141 1427 150 0 4 chrY 15094260 15094494 -36419090 + L1PB1 LINE L1 5910 6142 -9 27 0 0 0 chrY 15094494 15094521 -36419063 + AT_rich Low_complexity Low_complexity 1 27 0 298 373 65 11 chrY 15094625 15094810 -36418774 + MER91A DNA MER1_type 2 196 0 1796 174 16 0 chrY 15095007 15095312 -36418272 - AluSx SINE Alu -2 310 1 328 342 65 39 chrY 15095673 15095983 -36417601 - L1M4 LINE L1 -1842 4304 3987 1037 206 14 14 chrY 15096004 15096222 -36417362 - AluJb SINE Alu -7 305 88 28 48 0 0 chrY 15097675 15097717 -36415867 + AT_rich Low_complexity Low_complexity 1 42 0 207 105 53 0 chrY 15097799 15097856 -36415728 + (TA)n Simple_repeat Simple_repeat 2 61 0 1862 92 3 2 chrY 15097869 15098268 -36415316 + HERVL66 LTR ERVL 3846 4329 0 2763 115 10 5 chrY 15098268 15098668 -36414916 + LTR66 LTR ERVL 1 402 -208 476 92 0 0 chrY 15098673 15098738 -36414846 + LTR66 LTR ERVL 337 401 -209 622 89 18 62 chrY 15098739 15098851 -36414733 + LTR66 LTR ERVL 332 438 -172 5895 145 19 25 chrY 15098902 15099555 -36414029 + L1PA12 LINE L1 2033 2689 -4895 1600 180 13 39 chrY 15099555 15099866 -36413718 + AluSx SINE Alu 1 303 -9 189 0 0 0 chrY 15099867 15099888 -36413696 + (GA)n Simple_repeat Simple_repeat 2 22 0 5895 145 19 25 chrY 15099888 15100320 -36413264 + L1PA12 LINE L1 2688 3117 -4467 1017 194 0 0 chrY 15100605 15100775 -36412809 + AluSg/x SINE Alu 132 301 -11 1527 180 25 7 chrY 15102467 15102778 -36410806 + AluSg SINE Alu 11 310 0 1306 282 30 12 chrY 15102863 15103289 -36410295 + MLT1C LTR MaLR 34 467 0 902 180 16 122 chrY 15103772 15104017 -36409567 - AluSq SINE Alu -61 252 34 22 35 0 0 chrY 15104272 15104301 -36409283 + AT_rich Low_complexity Low_complexity 1 29 0 6845 49 0 0 chrY 15104687 15105746 -36407838 - L1PA5 LINE L1 0 6154 5072 7885 48 0 0 chrY 15105747 15106720 -36406864 + L1PA5 LINE L1 4112 5084 -1062 2687 26 0 0 chrY 15106803 15107108 -36406476 - AluY SINE Alu -6 305 1 180 77 0 0 chrY 15107118 15107144 -36406440 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1183 223 0 98 chrY 15107146 15107464 -36406120 - AluJb SINE Alu -15 287 1 25 0 0 0 chrY 15107513 15107538 -36406046 + AT_rich Low_complexity Low_complexity 1 25 0 28 35 0 35 chrY 15108408 15108449 -36405135 + AT_rich Low_complexity Low_complexity 1 41 -14 1801 164 0 7 chrY 15108449 15108747 -36404837 - AluSg SINE Alu -13 297 2 28 35 0 35 chrY 15108747 15108762 -36404822 + AT_rich Low_complexity Low_complexity 41 55 0 1764 186 30 0 chrY 15109231 15109532 -36404052 - AluSx SINE Alu 0 312 3 72 40 0 0 chrY 15109606 15109706 -36403878 + AT_rich Low_complexity Low_complexity 1 100 0 303 156 0 26 chrY 15109740 15109817 -36403767 + L1MA10 LINE L1 6243 6317 -17 25 83 0 0 chrY 15109849 15109909 -36403675 + AT_rich Low_complexity Low_complexity 1 60 0 420 71 0 0 chrY 15109934 15109990 -36403594 + (TA)n Simple_repeat Simple_repeat 1 56 0 908 282 83 52 chrY 15110014 15110606 -36402978 + L1MEc LINE L1 149 758 -5638 340 24 49 49 chrY 15111960 15112042 -36401542 + (TA)n Simple_repeat Simple_repeat 1 82 0 303 241 126 23 chrY 15112082 15112219 -36401365 + LTR33A LTR ERVL 34 150 -373 1647 201 3 0 chrY 15112521 15112814 -36400770 - AluJb SINE Alu -18 294 1 2139 111 3 0 chrY 15113275 15113563 -36400021 + AluY SINE Alu 23 311 0 605 209 44 16 chrY 15114255 15114437 -36399147 - MER53 DNA DNA -2 187 1 880 73 0 15 chrY 15114632 15114768 -36398816 + (TCTA)n Simple_repeat Simple_repeat 2 135 0 204 243 0 0 chrY 15115200 15115274 -36398310 + T-rich Low_complexity Low_complexity 1 74 0 26 30 0 0 chrY 15115613 15115646 -36397938 + AT_rich Low_complexity Low_complexity 1 33 0 606 165 16 31 chrY 15115706 15115833 -36397751 - FLAM_C SINE Alu -13 130 6 430 313 127 55 chrY 15116387 15116803 -36396781 + L1M4 LINE L1 3638 4023 -2123 2276 93 0 6 chrY 15116803 15117114 -36396470 - AluY SINE Alu 0 311 3 430 313 127 55 chrY 15117114 15117755 -36395829 + L1M4 LINE L1 4023 4771 -1375 2651 13 0 3 chrY 15118108 15118406 -36395178 - AluY SINE Alu -14 297 1 2453 158 32 54 chrY 15119058 15119559 -36394025 - LTR2B LTR ERV1 0 490 1 37000 216 15 8 chrY 15119559 15127317 -36386267 - HERVE LTR ERV1 -1 7812 1 2794 143 29 30 chrY 15127317 15127808 -36385776 - LTR2B LTR ERV1 0 490 1 2124 114 7 29 chrY 15127927 15128234 -36385350 - AluY SINE Alu -11 300 1 1444 223 3 20 chrY 15129071 15129371 -36384213 - AluJb SINE Alu -9 303 9 424 29 43 29 chrY 15129905 15129974 -36383610 + (TTTTC)n Simple_repeat Simple_repeat 1 70 0 354 80 0 0 chrY 15129972 15130022 -36383562 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 * 1906 171 26 0 chrY 15130022 15130366 -36383218 - AluSx SINE Alu 0 352 1 284 252 75 19 chrY 15131027 15131186 -36382398 - L1MC/D LINE L1 -2064 5744 5577 495 0 0 0 chrY 15131371 15131426 -36382158 + (TC)n Simple_repeat Simple_repeat 2 56 0 191 116 47 0 chrY 15131989 15132032 -36381552 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 206 286 25 12 chrY 15132855 15133016 -36380568 + (TA)n Simple_repeat Simple_repeat 2 164 0 246 290 0 0 chrY 15133136 15133198 -36380386 + (TATG)n Simple_repeat Simple_repeat 2 63 0 190 0 67 0 chrY 15133238 15133268 -36380316 + (TA)n Simple_repeat Simple_repeat 2 33 0 408 259 58 76 chrY 15133299 15133523 -36380061 + MER58A DNA MER1_type 1 220 -4 40 37 0 0 chrY 15133612 15133666 -36379918 + AT_rich Low_complexity Low_complexity 1 54 0 24 32 0 0 chrY 15133787 15133818 -36379766 + AT_rich Low_complexity Low_complexity 1 31 0 326 350 88 52 chrY 15133834 15134481 -36379103 - L2 LINE L2 0 3313 2645 288 77 0 0 chrY 15134669 15134708 -36378876 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1556 174 44 4 chrY 15134708 15134983 -36378601 - AluSx SINE Alu -26 286 1 406 319 95 58 chrY 15135074 15135400 -36378184 - L1ME4a LINE L1 -218 5903 5566 23 0 0 0 chrY 15135770 15135793 -36377791 + AT_rich Low_complexity Low_complexity 1 23 0 858 262 4 22 chrY 15135958 15136187 -36377397 - AluJb SINE Alu -24 288 64 448 323 117 5 chrY 15136189 15136412 -36377172 + L1MEc LINE L1 1493 1740 -4656 23 78 0 0 chrY 15136903 15136954 -36376630 + AT_rich Low_complexity Low_complexity 1 51 0 281 328 23 0 chrY 15136999 15137127 -36376457 + MLT1G1 LTR MaLR 1 131 -464 5672 110 11 2 chrY 15137659 15138302 -36375282 - L1PA7 LINE L1 -11 6143 5485 2381 107 3 0 chrY 15138302 15138611 -36374973 - AluY SINE Alu -1 310 1 5672 110 11 2 chrY 15138611 15139177 -36374407 - L1PA7 LINE L1 -669 5485 4925 1687 200 3 3 chrY 15139201 15139506 -36374078 + AluSx SINE Alu 1 305 -7 1338 225 5 43 chrY 15139636 15140005 -36373579 - L1M3 LINE L1 -490 5693 5339 * 1470 221 20 53 chrY 15140004 15140444 -36373140 + L1MB3 LINE L1 5731 6157 -26 1623 191 41 3 chrY 15140444 15140738 -36372846 - AluSx SINE Alu -7 305 1 1470 221 20 53 chrY 15140738 15140750 -36372834 + L1MB3 LINE L1 6157 6168 -15 218 228 16 39 chrY 15141017 15141144 -36372440 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 * 273 183 100 17 chrY 15141084 15141204 -36372380 + (TTATA)n Simple_repeat Simple_repeat 2 131 0 280 277 77 50 chrY 15141337 15141557 -36372027 + L1ME LINE L1 5523 5748 -414 1553 208 10 7 chrY 15141932 15142226 -36371358 + AluJo SINE Alu 1 295 -17 270 311 0 0 chrY 15142346 15142468 -36371116 + L1PBa LINE L1 105 226 -6637 1076 244 113 39 chrY 15142704 15143171 -36370413 - MLT1D LTR MaLR -1 504 3 248 229 42 25 chrY 15143349 15143467 -36370117 - L1PBa LINE L1 -6639 224 105 219 333 69 29 chrY 15144434 15144680 -36368904 + L2 LINE L2 1866 2121 -1193 194 311 27 68 chrY 15145006 15145080 -36368504 + L2 LINE L2 3114 3184 -88 1072 257 93 46 chrY 15145779 15146261 -36367323 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chrY 15146777 15146798 -36366786 + AT_rich Low_complexity Low_complexity 1 21 0 222 143 0 0 chrY 15147852 15147901 -36365683 + (TG)n Simple_repeat Simple_repeat 2 50 0 533 299 45 32 chrY 15148213 15148434 -36365150 - MER58A DNA MER1_type 0 224 1 1531 212 17 17 chrY 15148505 15148807 -36364777 - AluJo SINE Alu -10 302 1 3015 167 21 42 chrY 15149705 15149840 -36363744 - L1PB4 LINE L1 -1 6155 6019 1676 201 3 16 chrY 15149840 15150143 -36363441 - AluSx SINE Alu -13 299 1 3015 167 21 42 chrY 15150143 15150516 -36363068 - L1PB4 LINE L1 -137 6019 5662 1541 181 10 31 chrY 15150516 15150809 -36362775 - AluSx SINE Alu -25 287 1 3015 167 21 42 chrY 15150809 15150964 -36362620 - L1PB4 LINE L1 -494 5662 5505 2072 145 0 0 chrY 15151198 15151494 -36362090 - AluSq SINE Alu -9 304 9 1450 209 0 14 chrY 15151503 15151780 -36361804 - AluJo SINE Alu -16 296 24 25 31 0 0 chrY 15151816 15151848 -36361736 + AT_rich Low_complexity Low_complexity 1 32 0 575 343 111 14 chrY 15151907 15152251 -36361333 + L2 LINE L2 2601 2977 -337 35 41 0 0 chrY 15152317 15152366 -36361218 + AT_rich Low_complexity Low_complexity 1 49 0 428 67 0 2 chrY 15152378 15152442 -36361142 + L1PA5 LINE L1 5797 5859 -295 219 114 0 0 chrY 15152860 15152895 -36360689 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 978 258 50 65 chrY 15152906 15153034 -36360550 + MLT1D LTR MaLR 31 159 -346 1823 176 7 13 chrY 15153034 15153341 -36360243 - AluSx SINE Alu -5 307 3 978 258 50 65 chrY 15153341 15153438 -36360146 + MLT1D LTR MaLR 159 256 -249 2299 137 19 13 chrY 15153438 15153811 -36359773 - THE1C LTR MaLR 0 375 1 978 258 50 65 chrY 15153811 15154064 -36359520 + MLT1D LTR MaLR 256 503 -2 1271 188 115 8 chrY 15154073 15154334 -36359250 - AluJo SINE Alu -21 291 3 1806 183 0 0 chrY 15154906 15155190 -36358394 - AluSx SINE Alu -24 288 5 1455 214 35 6 chrY 15155282 15155721 -36357863 - MLT2B1 LTR ERVL -16 499 1 834 263 10 0 chrY 15155949 15156154 -36357430 - MER20 DNA MER1_type -5 214 8 323 330 0 0 chrY 15156447 15156547 -36357037 + GA-rich Low_complexity Low_complexity 1 100 0 1956 174 0 0 chrY 15157346 15157640 -36355944 - AluSx SINE Alu -18 294 1 997 225 25 54 chrY 15158585 15158900 -36354684 + MLT2C1 LTR ERVL 1 306 -91 339 96 0 0 chrY 15158961 15159013 -36354571 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 483 179 31 28 chrY 15159026 15159526 -36354058 + (TAGA)n Simple_repeat Simple_repeat 1 501 0 194 184 9 55 chrY 15159538 15159647 -36353937 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 227 91 13 78 chrY 15159719 15159796 -36353788 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 232 140 0 40 chrY 15159799 15159849 -36353735 + MLT2C1 LTR ERVL 467 514 -6 866 127 0 83 chrY 15160470 15160555 -36353029 - MER9 LTR ERVK 0 511 447 1690 160 56 0 chrY 15160555 15160842 -36352742 + AluY SINE Alu 1 303 -8 866 127 0 83 chrY 15160842 15160937 -36352647 - MER9 LTR ERVK -64 447 346 11040 106 8 13 chrY 15160937 15162605 -36350979 - HERVK9 LTR ERVK -656 5260 3601 * 14056 122 34 52 chrY 15162602 15164250 -36349334 - HERVK9 LTR ERVK -3433 2483 831 231 200 0 83 chrY 15164250 15164310 -36349274 - MER5B DNA MER1_type -69 109 55 14056 122 34 52 chrY 15164310 15165128 -36348456 - HERVK9 LTR ERVK -5085 831 1 3126 121 53 6 chrY 15165128 15165616 -36347968 - MER9 LTR ERVK 0 511 1 1693 157 3 24 chrY 15165908 15166195 -36347389 + AluSq SINE Alu 1 281 -32 31960 76 5 10 chrY 15166211 15172389 -36341195 + L1PA5 LINE L1 3 6147 -7 326 119 0 15 chrY 15172408 15172475 -36341109 + (TAAA)n Simple_repeat Simple_repeat 2 67 0 1865 148 10 17 chrY 15172874 15173172 -36340412 + AluSx SINE Alu 3 298 -14 239 228 69 50 chrY 15173203 15173304 -36340280 + LTR19C LTR ERV1 677 779 0 1025 201 0 38 chrY 15173304 15173513 -36340071 - AluJo SINE Alu -111 201 1 664 219 76 101 chrY 15173534 15173822 -36339762 + MLT1C LTR MaLR 53 333 -134 1189 228 0 0 chrY 15174811 15175057 -36338527 - L1MB3 LINE L1 -224 5959 5714 870 186 31 16 chrY 15175058 15175252 -36338332 + L1 LINE L1 4954 5150 -996 394 311 50 19 chrY 15175402 15175563 -36338021 - Zaphod DNA AcHobo -3762 269 104 641 36 12 0 chrY 15175571 15175655 -36337929 + (GA)n Simple_repeat Simple_repeat 1 85 0 324 102 0 0 chrY 15176077 15176126 -36337458 + (CA)n Simple_repeat Simple_repeat 2 50 0 1580 174 8 4 chrY 15176134 15176398 -36337186 - AluSx SINE Alu -26 286 22 1595 215 129 70 chrY 15176470 15177165 -36336419 - LTR48 LTR ERV1 0 787 39 1664 196 0 6 chrY 15177165 15177476 -36336108 - AluSx SINE Alu -3 309 1 1595 215 129 70 chrY 15177476 15177518 -36336066 - LTR48 LTR ERV1 -748 39 1 22 70 0 0 chrY 15178068 15178111 -36335473 + AT_rich Low_complexity Low_complexity 1 43 0 1289 177 107 27 chrY 15178795 15179123 -36334461 + THE1C LTR MaLR 1 354 -21 395 163 0 0 chrY 15179254 15179334 -36334250 + L1MA3 LINE L1 6226 6305 0 3436 149 25 20 chrY 15180536 15181141 -36332443 + MER4B LTR ERV1 1 608 -2 860 257 25 0 chrY 15181329 15181531 -36332053 - MLT1D LTR MaLR -7 498 292 509 251 10 96 chrY 15181569 15181682 -36331902 - MLT1D LTR MaLR -321 184 94 2945 152 10 6 chrY 15181682 15182194 -36331390 + L1PA11 LINE L1 5658 6171 -3 509 251 10 96 chrY 15182194 15182279 -36331305 - MLT1D LTR MaLR -411 94 3 1918 174 22 33 chrY 15182973 15183528 -36330056 - L1MA5A LINE L1 0 6297 5781 393 280 11 0 chrY 15183694 15183787 -36329797 - MER5A DNA MER1_type -83 106 13 2763 188 55 2 chrY 15184617 15185217 -36328367 + MER41B LTR ERV1 4 635 0 1233 210 93 67 chrY 15185217 15185603 -36327981 - MLT1C LTR MaLR -28 439 44 231 182 0 0 chrY 15185656 15185700 -36327884 - MLT1C LTR MaLR -422 45 2 1297 240 76 78 chrY 15185710 15186264 -36327320 - MLT2B3 LTR ERVL -1 553 1 25 51 0 0 chrY 15186520 15186559 -36327025 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chrY 15186882 15186907 -36326677 + AT_rich Low_complexity Low_complexity 1 25 0 200 373 57 2 chrY 15187014 15187131 -36326453 + MIR SINE MIR 36 158 -75 1455 213 7 7 chrY 15187866 15188199 -36325385 + AluSx SINE Alu 1 333 0 591 275 50 20 chrY 15188220 15188420 -36325164 - MIR SINE MIR -33 229 24 25 31 0 0 chrY 15188792 15188824 -36324760 + AT_rich Low_complexity Low_complexity 1 32 0 7236 112 5 5 chrY 15188824 15190730 -36322854 + L1PA7 LINE L1 4254 6150 -4 30 45 0 0 chrY 15190744 15190788 -36322796 + AT_rich Low_complexity Low_complexity 1 44 0 1604 191 80 30 chrY 15190884 15191282 -36322302 - L1MA4 LINE L1 -5 6295 5878 1953 133 11 7 chrY 15191626 15191912 -36321672 - AluSq SINE Alu -21 292 6 507 293 34 29 chrY 15192059 15192267 -36321317 - MER3 DNA MER1_type 0 209 1 216 86 0 0 chrY 15192320 15192355 -36321229 + (CA)n Simple_repeat Simple_repeat 2 36 0 3513 166 26 42 chrY 15193800 15194529 -36319055 - LTR62 LTR ERVK -2 717 1 1798 167 0 10 chrY 15196473 15196778 -36316806 + AluJb SINE Alu 1 302 -10 1834 161 0 13 chrY 15197626 15197930 -36315654 + AluY SINE Alu 1 300 -11 409 317 2 15 chrY 15198300 15198439 -36315145 - MER5B DNA MER1_type -1 177 54 222 318 45 27 chrY 15198691 15198801 -36314783 - MIR SINE MIR -54 208 97 225 204 0 0 chrY 15198821 15198865 -36314719 - MLT2B1 LTR ERVL 0 464 421 1405 214 3 24 chrY 15198947 15199242 -36314342 + AluJb SINE Alu 1 289 -23 1643 242 73 14 chrY 15199245 15199671 -36313913 - MLT2B1 LTR ERVL -69 451 1 330 115 0 0 chrY 15200459 15200520 -36313064 + (TA)n Simple_repeat Simple_repeat 1 61 0 246 336 45 22 chrY 15200791 15200925 -36312659 - MIR3 SINE MIR -60 148 12 1881 137 20 10 chrY 15200981 15201274 -36312310 - AluSc SINE Alu -13 296 1 216 111 0 0 chrY 15201414 15201450 -36312134 + (CA)n Simple_repeat Simple_repeat 1 36 0 680 264 42 112 chrY 15201450 15201960 -36311624 + L1ME1 LINE L1 5606 6076 -90 23 33 0 0 chrY 15202837 15202867 -36310717 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrY 15203343 15203372 -36310212 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrY 15203885 15203915 -36309669 + AT_rich Low_complexity Low_complexity 1 30 0 1528 181 36 30 chrY 15203972 15204276 -36309308 - AluSx SINE Alu -6 306 1 197 65 32 0 chrY 15205069 15205100 -36308484 + (GAAAA)n Simple_repeat Simple_repeat 5 36 0 342 290 55 14 chrY 15206684 15206829 -36306755 - MLT1B LTR MaLR -193 197 47 924 182 0 12 chrY 15207140 15207305 -36306279 + FRAM SINE Alu 5 167 -9 675 252 0 0 chrY 15207308 15207435 -36306149 + FLAM_A SINE Alu 1 127 -6 1496 228 3 7 chrY 15207866 15208164 -36305420 - AluJo SINE Alu -11 301 5 1954 197 68 27 chrY 15208353 15208795 -36304789 - LTR2B LTR ERV1 0 490 31 298 188 35 0 chrY 15208901 15208966 -36304618 + AluSp SINE Alu 153 210 -93 2026 119 20 10 chrY 15209535 15209837 -36303747 + AluY SINE Alu 1 305 -6 1381 210 42 0 chrY 15209855 15210141 -36303443 + AluJo SINE Alu 1 298 -14 1615 201 132 5 chrY 15211556 15211934 -36301650 + MSTA LTR MaLR 1 426 -2 1777 129 37 7 chrY 15212123 15212442 -36301142 + AluY SINE Alu 1 327 0 297 75 0 0 chrY 15212543 15212583 -36301001 + (CATA)n Simple_repeat Simple_repeat 2 41 0 219 114 0 0 chrY 15212588 15212623 -36300961 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 436 199 23 11 chrY 15212650 15212826 -36300758 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 355 178 46 23 chrY 15212874 15213048 -36300536 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 300 131 47 19 chrY 15213156 15213263 -36300321 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 1833 195 14 0 chrY 15214272 15214631 -36298953 - MLT1A1 LTR MaLR 0 365 2 1270 256 8 17 chrY 15214647 15214999 -36298585 + MLT2C2 LTR ERVL 3 351 -113 8181 111 13 2 chrY 15215003 15217028 -36296556 - L1PA7 LINE L1 0 6469 4437 1079 78 0 0 chrY 15217028 15217170 -36296414 + AluY SINE Alu 170 311 0 13578 136 26 11 chrY 15217170 15220850 -36292734 - L1PA7 LINE L1 -2017 4444 698 312 297 81 0 chrY 15220850 15220961 -36292623 + MLT2C2 LTR ERVL 345 464 0 580 217 101 72 chrY 15221149 15221287 -36292297 - MLT2B1 LTR ERVL -90 430 261 564 217 17 10 chrY 15221315 15221619 -36291965 + (TA)n Simple_repeat Simple_repeat 1 306 0 242 208 19 26 chrY 15221663 15221817 -36291767 + (TA)n Simple_repeat Simple_repeat 2 154 0 23 0 0 0 chrY 15223886 15223909 -36289675 + AT_rich Low_complexity Low_complexity 1 23 0 4593 143 14 75 chrY 15223909 15224524 -36289060 - L1PA16 LINE L1 -4 6162 5633 1907 163 0 3 chrY 15224524 15224830 -36288754 - AluSg SINE Alu -5 305 1 4593 143 14 75 chrY 15224830 15225263 -36288321 - L1PA16 LINE L1 -533 5633 5175 26 30 0 0 chrY 15225664 15225697 -36287887 + AT_rich Low_complexity Low_complexity 1 33 0 302 307 64 41 chrY 15225888 15226106 -36287478 - HAL1b LINE L1 -432 916 694 3625 182 21 34 chrY 15226170 15226516 -36287068 - L1MA4 LINE L1 -9 6291 5942 1976 160 3 3 chrY 15226516 15226829 -36286755 - AluSq SINE Alu 0 313 1 3625 182 21 34 chrY 15226829 15227288 -36286296 - L1MA4 LINE L1 -358 5942 5496 2044 147 0 0 chrY 15227306 15227599 -36285985 + AluSx SINE Alu 1 293 -19 2565 13 0 27 chrY 15227943 15228285 -36285299 - AluYa5 SINE Alu 0 311 1 588 268 111 100 chrY 15228490 15228704 -36284880 + Charlie2b DNA MER1_type 320 530 -2252 1962 160 0 16 chrY 15228704 15229022 -36284562 - AluSq SINE Alu 0 313 1 588 268 111 100 chrY 15229022 15229492 -36284092 + Charlie2b DNA MER1_type 530 1017 -1765 1830 126 0 4 chrY 15229492 15229754 -36283830 + AluSg SINE Alu 34 294 -16 588 268 111 100 chrY 15229754 15229868 -36283716 + Charlie2b DNA MER1_type 1017 1128 -1654 4931 147 15 62 chrY 15230143 15236497 -36277087 - L1PA7 LINE L1 -20 6134 2 28 61 0 0 chrY 15236865 15236914 -36276670 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chrY 15237031 15237056 -36276528 + AT_rich Low_complexity Low_complexity 1 25 0 580 90 0 0 chrY 15237645 15237723 -36275861 - MADE1 DNA Mariner 0 80 3 260 352 75 53 chrY 15237963 15238321 -36275263 - L2 LINE L2 -2 3311 2946 1694 161 30 7 chrY 15238468 15238766 -36274818 - AluSx SINE Alu -6 306 2 28 0 0 0 chrY 15239598 15239626 -36273958 + AT_rich Low_complexity Low_complexity 1 28 0 7090 53 2 0 chrY 15239968 15241176 -36272408 - L1PA5 LINE L1 0 6154 4942 330 98 0 0 chrY 15241209 15241260 -36272324 + (TG)n Simple_repeat Simple_repeat 2 52 0 773 189 34 0 chrY 15241987 15242135 -36271449 - L1MA2 LINE L1 -22 6282 6130 287 316 35 115 chrY 15242206 15242494 -36271090 + L2 LINE L2 953 1217 -2097 862 225 16 11 chrY 15242559 15242750 -36270834 - L1PB4 LINE L1 -7 6149 5958 764 99 35 7 chrY 15242750 15242891 -36270693 + GA-rich Low_complexity Low_complexity 1 145 0 206 222 32 0 chrY 15242908 15242971 -36270613 + GA-rich Low_complexity Low_complexity 4 68 0 663 187 6 54 chrY 15242974 15243140 -36270444 - L1PB4 LINE L1 -234 5922 5765 907 86 14 0 chrY 15243140 15243279 -36270305 + (TTCC)n Simple_repeat Simple_repeat 1 141 0 445 316 0 7 chrY 15243279 15243597 -36269987 - AluJb SINE Alu 0 312 153 4251 202 33 28 chrY 15243638 15245014 -36268570 - L1PA15 LINE L1 -13 6152 4770 297 203 0 0 chrY 15245014 15245073 -36268511 - L1 LINE L1 -1532 4614 4556 * 39310 83 2 7 chrY 15245065 15251233 -36262351 + L1PA5 LINE L1 12 6149 -5 2682 227 27 17 chrY 15251230 15251938 -36261646 - L1PA15 LINE L1 -1570 4576 3862 * 283 371 84 31 chrY 15252028 15252478 -36261106 + L2 LINE L2 1364 1837 -1477 406 186 62 7 chrY 15254200 15254362 -36259222 + (TCTA)n Simple_repeat Simple_repeat 1 153 -609 2036 139 3 3 chrY 15254362 15254665 -36258919 - AluSp SINE Alu -10 303 1 406 186 62 7 chrY 15254665 15254923 -36258661 + (TCTA)n Simple_repeat Simple_repeat 153 762 0 444 147 60 0 chrY 15254976 15255126 -36258458 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 192 77 0 0 chrY 15255191 15255217 -36258367 + (TC)n Simple_repeat Simple_repeat 2 27 0 238 277 10 30 chrY 15255648 15255749 -36257835 + T-rich Low_complexity Low_complexity 2 100 0 29 84 0 0 chrY 15257162 15257233 -36256351 + AT_rich Low_complexity Low_complexity 1 71 0 573 152 6 38 chrY 15257783 15257941 -36255643 + CT-rich Low_complexity Low_complexity 4 156 0 445 178 35 29 chrY 15257993 15258167 -36255417 + CT-rich Low_complexity Low_complexity 1 175 0 1140 217 107 11 chrY 15258189 15258452 -36255132 - AluJo SINE Alu -14 288 1 405 78 13 26 chrY 15259116 15259193 -36254391 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2829 193 8 8 chrY 15259927 15260523 -36253061 - L1MA4 LINE L1 -5 6295 5700 828 173 3 15 chrY 15260700 15260885 -36252699 - L1M3 LINE L1 -430 5738 5555 1141 170 52 134 chrY 15261278 15261786 -36251798 + AluSx SINE Alu 1 481 0 245 29 0 29 chrY 15261787 15261822 -36251762 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 261 0 0 0 chrY 15261828 15261857 -36251727 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 2349 70 0 10 chrY 15262011 15262311 -36251273 - AluY SINE Alu -14 297 1 2007 99 10 40 chrY 15262313 15262616 -36250968 - AluY SINE Alu -17 294 1 337 158 0 0 chrY 15262648 15262705 -36250879 - MLT1B LTR MaLR -16 374 318 1791 171 10 64 chrY 15262792 15263013 -36250571 - MLT1B LTR MaLR -2 388 157 1482 206 3 26 chrY 15263013 15263323 -36250261 - AluJb SINE Alu -9 303 1 2390 57 0 0 chrY 15263327 15263726 -36249858 - AluY SINE Alu 0 399 1 1791 171 10 64 chrY 15263726 15263907 -36249677 - MLT1B LTR MaLR -236 154 2 24 77 0 0 chrY 15264054 15264106 -36249478 + AT_rich Low_complexity Low_complexity 1 52 0 572 167 17 25 chrY 15264164 15264525 -36249059 + (TCTA)n Simple_repeat Simple_repeat 1 358 0 622 153 32 14 chrY 15264549 15264830 -36248754 + (TCTA)n Simple_repeat Simple_repeat 1 286 0 1167 254 46 57 chrY 15264831 15265327 -36248257 + L1MA9 LINE L1 5785 6275 -37 23 54 0 0 chrY 15265327 15265364 -36248220 + AT_rich Low_complexity Low_complexity 1 37 0 617 191 40 16 chrY 15265610 15265736 -36247848 + FLAM_C SINE Alu 4 132 -11 1244 233 4 22 chrY 15266715 15266986 -36246598 + AluJo SINE Alu 1 266 -46 1175 144 0 17 chrY 15267721 15267901 -36245683 + AluSc SINE Alu 101 277 -32 526 213 37 59 chrY 15268610 15268746 -36244838 - FLAM_C SINE Alu 0 133 1 218 260 13 13 chrY 15269076 15269153 -36244431 + (CATA)n Simple_repeat Simple_repeat 1 77 0 188 364 20 10 chrY 15269536 15269635 -36243949 + MIR SINE MIR 48 147 -115 180 0 0 0 chrY 15269742 15269762 -36243822 + (GA)n Simple_repeat Simple_repeat 1 20 0 1140 189 62 39 chrY 15270861 15271020 -36242564 + L1MA9 LINE L1 5996 6150 -162 195 100 0 0 chrY 15271020 15271050 -36242534 + (CA)n Simple_repeat Simple_repeat 1 30 0 1140 189 62 39 chrY 15271050 15271196 -36242388 + L1MA9 LINE L1 6150 6308 -4 11425 149 9 28 chrY 15271556 15274130 -36239454 + L1P3 LINE L1 11 2588 -3873 792 287 85 21 chrY 15274488 15274864 -36238720 + L1MC4 LINE L1 6679 7078 -964 202 257 19 0 chrY 15274872 15274977 -36238607 + (TA)n Simple_repeat Simple_repeat 2 108 0 2871 137 8 25 chrY 15275090 15275564 -36238020 + MER1A DNA MER1_type 64 529 0 2347 168 5 2 chrY 15275628 15276034 -36237550 - L1PA15 LINE L1 -2 6163 5757 5127 116 19 0 chrY 15276059 15276817 -36236767 - L1PA11 LINE L1 -2 6172 5401 310 342 117 8 chrY 15276817 15277057 -36236527 + L1MC4 LINE L1 7254 7519 -523 2950 174 25 0 chrY 15277160 15277520 -36236064 + MER1A DNA MER1_type 31 408 -2294 180 0 0 0 chrY 15277520 15277540 -36236044 + (TAA)n Simple_repeat Simple_repeat 1 20 0 2950 174 25 0 chrY 15277540 15277666 -36235918 + MER1A DNA MER1_type 408 529 0 257 344 88 33 chrY 15278086 15278586 -36234998 - L2 LINE L2 -86 3227 2702 1003 169 176 72 chrY 15278658 15278965 -36234619 - MER44D DNA MER2_type 0 609 1 945 242 6 92 chrY 15278988 15279183 -36234401 - AluJb SINE Alu -2 300 143 387 105 0 0 chrY 15279183 15279240 -36234344 + (TG)n Simple_repeat Simple_repeat 2 58 0 945 242 6 92 chrY 15279240 15279371 -36234213 - AluJb SINE Alu -159 143 2 994 142 69 49 chrY 15281809 15282013 -36231571 - THE1B LTR MaLR 0 364 157 550 144 21 10 chrY 15282146 15282243 -36231341 + MER4A LTR ERV1 1 98 -566 358 62 21 0 chrY 15282243 15282291 -36231293 + MER4A LTR ERV1 261 309 -355 2065 140 23 9 chrY 15282291 15282641 -36230943 - THE1A LTR MaLR 0 355 1 1747 156 3 30 chrY 15282650 15282951 -36230633 + MER4A LTR ERV1 372 664 0 399 113 38 0 chrY 15283725 15283805 -36229779 + CT-rich Low_complexity Low_complexity 2 84 0 304 177 13 13 chrY 15283892 15283971 -36229613 + CT-rich Low_complexity Low_complexity 2 80 0 188 67 33 0 chrY 15284876 15284906 -36228678 + (TAGA)n Simple_repeat Simple_repeat 1 31 0 218 271 0 43 chrY 15284907 15284977 -36228607 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 654 203 8 8 chrY 15284977 15285234 -36228350 + (TAGA)n Simple_repeat Simple_repeat 1 257 0 219 69 0 0 chrY 15285280 15285309 -36228275 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 243 0 0 0 chrY 15285308 15285335 -36228249 + (CA)n Simple_repeat Simple_repeat 2 28 0 238 258 30 0 chrY 15285873 15285939 -36227645 + L1MA9 LINE L1 6015 6082 -230 206 219 62 51 chrY 15286005 15286183 -36227401 + (CATTA)n Simple_repeat Simple_repeat 1 180 0 313 249 34 28 chrY 15286421 15286598 -36226986 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 210 236 57 21 chrY 15286724 15286864 -36226720 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 502 195 0 0 chrY 15286917 15287004 -36226580 + MER58A DNA MER1_type 35 121 0 555 171 63 0 chrY 15287005 15287116 -36226468 + MER57A LTR ERV1 1 118 -285 473 132 0 99 chrY 15287118 15287209 -36226375 - AluJo SINE Alu -11 301 220 * 798 226 0 24 chrY 15287202 15287370 -36226214 - AluJo SINE Alu -148 164 1 799 220 47 0 chrY 15287383 15287574 -36226010 + MER57A LTR ERV1 203 402 -1 377 258 22 0 chrY 15287575 15287664 -36225920 + MER58A DNA MER1_type 119 209 -15 331 256 162 104 chrY 15289318 15289465 -36224119 + MLT1H LTR MaLR 1 138 -411 2886 162 39 12 chrY 15289465 15289978 -36223606 + MER1A DNA MER1_type 1 527 0 331 256 162 104 chrY 15289978 15290139 -36223445 + MLT1H LTR MaLR 138 327 -222 1017 208 0 5 chrY 15290325 15290527 -36223057 + MLT2B1 LTR ERVL 1 201 -319 3889 155 29 12 chrY 15290529 15291188 -36222396 + LTR8 LTR ERV1 1 670 -21 651 255 74 11 chrY 15291221 15291418 -36222166 + MLT2B2 LTR ERVL 201 414 -106 467 218 0 0 chrY 15291419 15291506 -36222078 - AluJ/FLAM SINE Alu -223 89 3 249 267 13 0 chrY 15291538 15291613 -36221971 - MER58A DNA MER1_type 0 134 59 551 285 117 36 chrY 15292070 15292379 -36221205 - L1MEc LINE L1 -5952 444 111 3637 162 72 32 chrY 15292432 15293172 -36220412 + MER4E LTR ERV1 1 769 -10 3136 155 22 2 chrY 15293607 15294150 -36219434 - MER41A LTR ERV1 0 554 1 1463 192 13 45 chrY 15294308 15294616 -36218968 - AluJo SINE Alu -14 298 1 2448 72 0 0 chrY 15294830 15295134 -36218450 + AluY SINE Alu 4 307 -4 567 224 136 0 chrY 15295207 15295354 -36218230 + LTR1B LTR ERV1 660 826 0 * 881 206 19 33 chrY 15295354 15295558 -36218026 - MER20 DNA MER1_type -17 202 2 381 43 0 0 chrY 15295727 15295774 -36217810 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1533 196 4 0 chrY 15295788 15296063 -36217521 - AluJb SINE Alu -30 282 7 315 238 98 91 chrY 15296112 15296416 -36217168 - L1MC5 LINE L1 -219 7742 7429 1959 149 3 0 chrY 15296416 15296745 -36216839 - AluSg SINE Alu 0 330 1 315 238 98 91 chrY 15296745 15296977 -36216607 - L1MC5 LINE L1 -532 7429 7200 687 153 0 0 chrY 15297117 15297215 -36216369 - THE1C LTR MaLR -277 98 1 251 192 0 19 chrY 15297216 15297268 -36216316 - MLT1A2 LTR MaLR -323 51 1 2557 180 39 34 chrY 15297557 15297720 -36215864 - LTR24C LTR ERV1 0 594 433 2384 100 0 0 chrY 15297720 15298031 -36215553 + AluY SINE Alu 1 311 0 2557 180 39 34 chrY 15298031 15298459 -36215125 - LTR24C LTR ERV1 -161 433 36 1707 162 0 4 chrY 15298459 15298750 -36214834 + AluSx SINE Alu 19 308 0 2557 180 39 34 chrY 15298750 15298782 -36214802 - LTR24C LTR ERV1 -558 36 6 2009 68 8 0 chrY 15299111 15299377 -36214207 + L1PA4 LINE L1 5888 6155 0 1971 107 0 77 chrY 15299573 15299909 -36213675 + AluY SINE Alu 1 310 -1 1207 198 8 36 chrY 15299915 15300167 -36213417 + AluSx SINE Alu 45 289 -23 23 0 0 0 chrY 15300190 15300213 -36213371 + AT_rich Low_complexity Low_complexity 1 23 0 1895 184 41 23 chrY 15300578 15300887 -36212697 + MSTB1 LTR MaLR 1 320 -112 3968 178 14 36 chrY 15300887 15301690 -36211894 - LTR1 LTR ERV1 0 785 1 1895 184 41 23 chrY 15301690 15301767 -36211817 + MSTB1 LTR MaLR 320 394 -38 1324 205 16 19 chrY 15301768 15302026 -36211558 + AluSx SINE Alu 1 257 -55 6174 97 15 0 chrY 15302679 15304036 -36209548 - L1PA7 LINE L1 -324 5830 4461 26 30 0 0 chrY 15304046 15304079 -36209505 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chrY 15304337 15304364 -36209220 + AT_rich Low_complexity Low_complexity 1 27 0 337 303 122 63 chrY 15304887 15305346 -36208238 + L1M4 LINE L1 2732 3217 -2929 234 252 135 0 chrY 15305488 15305599 -36207985 + L1M4 LINE L1 3362 3487 -2659 246 337 77 12 chrY 15305663 15305832 -36207752 + L2 LINE L2 2714 2893 -421 469 209 36 0 chrY 15305898 15306037 -36207547 - L1MA7 LINE L1 -1 6290 6147 183 323 108 0 chrY 15306037 15306130 -36207454 + L2 LINE L2 2932 3034 -279 1578 171 43 0 chrY 15306883 15307164 -36206420 - AluSx SINE Alu -19 293 1 24 53 0 0 chrY 15307892 15307930 -36205654 + AT_rich Low_complexity Low_complexity 1 38 0 1591 188 0 28 chrY 15308159 15308293 -36205291 + AluSg SINE Alu 1 137 -173 2003 111 3 7 chrY 15308293 15308582 -36205002 + AluY SINE Alu 1 288 -23 243 0 0 0 chrY 15308585 15308612 -36204972 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1591 188 0 28 chrY 15308612 15308760 -36204824 + AluSg SINE Alu 139 279 -31 666 25 0 0 chrY 15308762 15308842 -36204742 + (CAATA)n Simple_repeat Simple_repeat 2 81 0 22 35 0 0 chrY 15308929 15308958 -36204626 + AT_rich Low_complexity Low_complexity 1 29 0 197 207 0 17 chrY 15310021 15310079 -36203505 + CT-rich Low_complexity Low_complexity 5 61 0 208 233 0 0 chrY 15311403 15311446 -36202138 + (CA)n Simple_repeat Simple_repeat 2 44 0 1507 208 19 10 chrY 15311602 15311910 -36201674 + AluSx SINE Alu 1 311 -1 493 222 15 0 chrY 15311911 15312046 -36201538 + GA-rich Low_complexity Low_complexity 1 137 0 294 191 29 15 chrY 15312051 15312119 -36201465 + A-rich Low_complexity Low_complexity 4 72 0 231 173 0 0 chrY 15312121 15312173 -36201411 + GA-rich Low_complexity Low_complexity 3 54 0 680 180 0 0 chrY 15313390 15313501 -36200083 - FLAM_A SINE Alu -22 120 10 500 265 125 19 chrY 15313514 15313835 -36199749 - L1M4 LINE L1 -1387 4759 4405 298 271 53 48 chrY 15313912 15314115 -36199469 - L1M4 LINE L1 -2101 4045 3842 39 80 0 0 chrY 15314199 15314287 -36199297 + AT_rich Low_complexity Low_complexity 1 88 0 3511 85 45 0 chrY 15314369 15314838 -36198746 + LTR2B LTR ERV1 1 490 0 2404 141 5 11 chrY 15314838 15315220 -36198364 + Harlequin LTR ERV1 1 380 -6516 * 29414 235 13 9 chrY 15315215 15315495 -36198089 + HERVE LTR ERV1 261 539 -7274 377 20 0 20 chrY 15315495 15315546 -36198038 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 29414 235 13 9 chrY 15315546 15322541 -36191043 + HERVE LTR ERV1 539 7557 -256 2173 106 0 0 chrY 15322541 15322865 -36190719 + AluY SINE Alu 10 311 0 29414 235 13 9 chrY 15322865 15323122 -36190462 + HERVE LTR ERV1 7557 7812 -1 3431 88 49 2 chrY 15323122 15323590 -36189994 + LTR2B LTR ERV1 1 490 0 1053 228 15 19 chrY 15323663 15323922 -36189662 + AluJo SINE Alu 1 258 -54 729 157 4 26 chrY 15323937 15324167 -36189417 + GA-rich Low_complexity Low_complexity 1 225 0 212 156 0 0 chrY 15324167 15324199 -36189385 + polypurine Low_complexity Low_complexity 1 32 0 487 226 0 0 chrY 15324594 15324687 -36188897 + AluSg SINE Alu 1 93 -217 289 138 123 0 chrY 15324698 15324763 -36188821 - LTR8 LTR ERV1 -226 465 393 * 1827 179 63 58 chrY 15324730 15325176 -36188408 - LTR8A LTR ERV1 -267 460 13 220 189 27 14 chrY 15325209 15325283 -36188301 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 1408 194 47 29 chrY 15325422 15325762 -36187822 + MER4A LTR ERV1 1 346 -318 495 157 223 16 chrY 15325898 15326019 -36187565 + MER4C LTR ERV1 302 447 -18 1709 187 3 0 chrY 15326663 15326957 -36186627 + AluSc SINE Alu 3 297 -12 22 56 0 0 chrY 15326985 15327021 -36186563 + AT_rich Low_complexity Low_complexity 1 36 0 4535 149 9 3 chrY 15327065 15327814 -36185770 + L1PB1 LINE L1 5396 6149 -2 24 0 0 0 chrY 15327906 15327930 -36185654 + AT_rich Low_complexity Low_complexity 1 24 0 180 152 0 0 chrY 15327945 15327978 -36185606 + (TA)n Simple_repeat Simple_repeat 1 33 0 1403 139 28 28 chrY 15328889 15329141 -36184443 - L1PB1 LINE L1 0 6151 5900 446 0 0 18 chrY 15329167 15329222 -36184362 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 1580 126 0 0 chrY 15329238 15329468 -36184116 - L1PB1 LINE L1 -397 5754 5525 2474 4 0 0 chrY 15330103 15330370 -36183214 + AluYa8 SINE Alu 41 307 -3 207 0 0 0 chrY 15330427 15330450 -36183134 + (A)n Simple_repeat Simple_repeat 1 23 0 21 71 0 0 chrY 15330459 15330501 -36183083 + AT_rich Low_complexity Low_complexity 1 42 0 24 77 0 0 chrY 15332910 15332962 -36180622 + AT_rich Low_complexity Low_complexity 1 52 0 3189 189 16 12 chrY 15333065 15333243 -36180341 - L1MB3 LINE L1 -38 6145 5969 4103 132 6 24 chrY 15333243 15333915 -36179669 + PABL_A LTR ERV1 1 660 0 3189 189 16 12 chrY 15333915 15334428 -36179156 - L1MB3 LINE L1 -214 5969 5451 1654 182 0 21 chrY 15334461 15334785 -36178799 + AluSx SINE Alu 3 320 0 2694 127 42 7 chrY 15334810 15335243 -36178341 - LTR7 LTR ERV1 -2 448 1 458 83 14 0 chrY 15335278 15335350 -36178234 + (TG)n Simple_repeat Simple_repeat 2 74 0 245 257 81 0 chrY 15335716 15335790 -36177794 - L2 LINE L2 0 3313 3234 1302 186 27 73 chrY 15336080 15336381 -36177203 + AluJo SINE Alu 3 289 -23 1739 181 3 16 chrY 15336771 15337074 -36176510 - AluSg SINE Alu -11 299 1 974 134 0 6 chrY 15337106 15337285 -36176299 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 531 69 0 0 chrY 15337303 15337375 -36176209 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 1237 213 87 4 chrY 15337379 15337633 -36175951 - AluSx SINE Alu -32 280 6 21114 61 1 0 chrY 15337979 15340724 -36172860 - L1PA3 LINE L1 -2262 3884 1136 11479 60 1 2 chrY 15340724 15341161 -36172423 + L1PA3 LINE L1 3893 4329 -1850 2882 16 0 0 chrY 15341161 15341477 -36172107 + AluYb8 SINE Alu 1 316 -2 11479 60 1 2 chrY 15341477 15343338 -36170246 + L1PA3 LINE L1 4329 6179 0 324 0 0 0 chrY 15343472 15343508 -36170076 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chrY 15343607 15343636 -36169948 + AT_rich Low_complexity Low_complexity 1 29 0 1134 245 0 48 chrY 15343682 15344001 -36169583 - AluJo SINE Alu 0 307 3 806 246 6 11 chrY 15344056 15344239 -36169345 - AluJo SINE Alu -92 220 39 284 158 18 0 chrY 15344262 15344319 -36169265 + (TTA)n Simple_repeat Simple_repeat 3 60 0 24 85 0 0 chrY 15344424 15344483 -36169101 + AT_rich Low_complexity Low_complexity 1 59 0 8671 50 1 10 chrY 15345406 15346470 -36167114 - L1PA4 LINE L1 -1445 4701 3646 6640 70 12 6 chrY 15346470 15347919 -36165665 + L1PA4 LINE L1 4693 6152 -3 8671 50 1 10 chrY 15347919 15347968 -36165616 - L1P LINE L1 -2500 3646 3598 1059 286 196 15 chrY 15348111 15348631 -36164953 - MLT1E2 LTR MaLR -12 614 1 816 209 2 2 chrY 15348690 15349167 -36164417 + (ATG)n Simple_repeat Simple_repeat 1 477 0 225 296 28 19 chrY 15349778 15349886 -36163698 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 1875 163 68 0 chrY 15349925 15350263 -36163321 + THE1B LTR MaLR 1 361 -3 1633 184 4 0 chrY 15350263 15350529 -36163055 - AluSx SINE Alu -33 279 13 36 62 0 0 chrY 15351407 15351471 -36162113 + AT_rich Low_complexity Low_complexity 1 64 0 213 238 62 6 chrY 15351490 15351650 -36161934 + (TA)n Simple_repeat Simple_repeat 1 169 0 1725 180 0 0 chrY 15351652 15351930 -36161654 - AluSx SINE Alu -22 290 13 1693 199 0 3 chrY 15352262 15352559 -36161025 + AluJb SINE Alu 1 296 -16 1248 219 7 37 chrY 15352588 15352885 -36160699 - LTR51 LTR ERV1 0 671 384 377 125 42 0 chrY 15352885 15352957 -36160627 + (ATGGTG)n Simple_repeat Simple_repeat 1 75 0 1671 199 60 11 chrY 15352969 15353335 -36160249 - LTR51 LTR ERV1 -285 386 3 1540 154 73 18 chrY 15353434 15353739 -36159845 + AluSx SINE Alu 26 345 0 1389 218 11 14 chrY 15354888 15355063 -36158521 - AluSx SINE Alu 0 313 139 204 40 0 0 chrY 15355063 15355088 -36158496 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1584 105 0 5 chrY 15355088 15355298 -36158286 - AluY SINE Alu -102 209 1 1389 218 11 14 chrY 15355298 15355435 -36158149 - AluSx SINE Alu -172 141 1 203 261 246 23 chrY 15355478 15355608 -36157976 - L2 LINE L2 -7 3306 3148 917 246 19 0 chrY 15355664 15355879 -36157705 + MER58A DNA MER1_type 6 224 0 1660 130 35 21 chrY 15356075 15356359 -36157225 - AluSx SINE Alu -1 311 24 1168 237 65 117 chrY 15356409 15356937 -36156647 - L1MD2 LINE L1 -16 6343 5789 1783 168 0 19 chrY 15356937 15357247 -36156337 - AluSc SINE Alu 0 309 6 1168 237 65 117 chrY 15357247 15357371 -36156213 - L1MD2 LINE L1 -570 5789 5734 1497 186 28 7 chrY 15357371 15357661 -36155923 - AluJb SINE Alu -14 298 3 1168 237 65 117 chrY 15357661 15357776 -36155808 - L1MD2 LINE L1 -625 5734 5615 27 29 0 0 chrY 15358043 15358077 -36155507 + AT_rich Low_complexity Low_complexity 1 34 0 1024 92 0 0 chrY 15358119 15358261 -36155323 + HERVK9 LTR ERVK 1765 1906 -4010 24764 91 22 27 chrY 15358261 15361830 -36151754 + HERVK9 LTR ERVK 2364 5914 -2 3495 123 2 4 chrY 15361832 15362344 -36151240 + MER9 LTR ERVK 1 511 0 4202 176 55 13 chrY 15362344 15363168 -36150416 - MER4D LTR ERV1 -45 858 1 189 344 31 0 chrY 15363357 15363421 -36150163 + L2 LINE L2 3235 3300 -13 25 0 0 0 chrY 15363804 15363829 -36149755 + AT_rich Low_complexity Low_complexity 1 25 0 589 231 8 0 chrY 15364020 15364141 -36149443 + FLAM_C SINE Alu 1 122 -21 1561 201 18 3 chrY 15364360 15364643 -36148941 + AluSx SINE Alu 4 290 -22 21 36 0 0 chrY 15364711 15364739 -36148845 + AT_rich Low_complexity Low_complexity 1 28 0 249 289 53 0 chrY 15365032 15365108 -36148476 + L2 LINE L2 3225 3304 -9 1322 239 4 4 chrY 15365422 15365694 -36147890 + AluJb SINE Alu 4 275 -37 853 162 11 15 chrY 15365694 15365969 -36147615 + GA-rich Low_complexity Low_complexity 1 274 0 303 28 0 0 chrY 15365969 15366005 -36147579 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 233 89 22 0 chrY 15366352 15366397 -36147187 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1422 238 137 45 chrY 15366589 15367261 -36146323 - LTR1B LTR ERV1 0 826 1 1663 165 64 0 chrY 15367341 15367607 -36145977 + AluSx SINE Alu 1 283 -29 609 189 9 0 chrY 15367634 15367740 -36145844 + FLAM_C SINE Alu 3 109 -34 24 0 0 0 chrY 15367740 15367764 -36145820 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chrY 15368086 15368124 -36145460 + AT_rich Low_complexity Low_complexity 1 38 0 1384 212 0 56 chrY 15368262 15368568 -36145016 + AluJb SINE Alu 13 301 -11 747 236 10 15 chrY 15369038 15369229 -36144355 + MER3 DNA MER1_type 3 192 -17 2390 156 65 50 chrY 15369229 15369827 -36143757 + MER4B LTR ERV1 1 777 -2 3453 150 24 0 chrY 15369915 15370463 -36143121 - MER61E LTR ERV1 -4 565 5 1548 168 30 93 chrY 15370820 15370974 -36142610 - LTR8 LTR ERV1 -11 680 518 1399 219 16 19 chrY 15370974 15371325 -36142259 - AluSx SINE Alu 0 351 2 1548 168 30 93 chrY 15371325 15371597 -36141987 - LTR8 LTR ERV1 -173 518 307 6765 30 0 0 chrY 15371648 15372445 -36141139 - L1PA3 LINE L1 0 6155 5359 994 203 19 65 chrY 15372445 15372706 -36140878 - LTR8 LTR ERV1 -442 249 1 21 0 0 0 chrY 15374089 15374110 -36139474 + AT_rich Low_complexity Low_complexity 1 21 0 2653 144 2 27 chrY 15374253 15374684 -36138900 + MER57B LTR ERV1 1 422 -12 1844 82 103 7 chrY 15374684 15374965 -36138619 - L1PA5 LINE L1 -2 6152 5845 2653 144 2 27 chrY 15374965 15374978 -36138606 + MER57B LTR ERV1 422 434 0 366 150 38 45 chrY 15375945 15376078 -36137506 + (TCTA)n Simple_repeat Simple_repeat 2 133 0 227 282 12 0 chrY 15376094 15376179 -36137405 - L1MC4 LINE L1 -112 7930 7845 225 182 136 15 chrY 15376505 15376571 -36137013 - L1MC/D LINE L1 -2298 5510 5437 296 178 14 0 chrY 15376573 15376646 -36136938 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2028 146 7 3 chrY 15376984 15377286 -36136298 + AluSp SINE Alu 2 304 -9 1130 240 10 22 chrY 15377881 15378194 -36135390 - L1MA8 LINE L1 -22 6269 5961 324 188 0 0 chrY 15378735 15378799 -36134785 + (TA)n Simple_repeat Simple_repeat 1 64 0 1934 129 4 11 chrY 15378799 15379078 -36134506 - AluY SINE Alu -19 292 16 3449 133 7 11 chrY 15379268 15379824 -36133760 - MER41A LTR ERV1 0 554 1 261 259 0 0 chrY 15380206 15380260 -36133324 - MER58 DNA MER1_type -104 237 184 501 200 0 0 chrY 15380282 15380377 -36133207 - FLAM_C SINE Alu -18 125 31 450 144 39 19 chrY 15380397 15380501 -36133083 - MER58 DNA MER1_type -156 185 80 1806 129 0 0 chrY 15380502 15380774 -36132810 + L1PB1 LINE L1 5517 5788 -363 1501 131 180 77 chrY 15380774 15381140 -36132444 - MER4A LTR ERV1 0 664 261 445 202 0 10 chrY 15381140 15381239 -36132345 - MER4A LTR ERV1 -566 98 1 2166 135 14 8 chrY 15381239 15381603 -36131981 + L1PB1 LINE L1 5785 6150 -1 2490 166 83 16 chrY 15381650 15382163 -36131421 + LTR29 LTR ERV1 5 552 -70 2356 151 26 21 chrY 15382163 15382277 -36131307 - MER57B LTR ERV1 -2 432 320 2208 220 18 10 chrY 15382277 15382786 -36130798 + LTR10D LTR ERV1 1 513 0 2356 151 26 21 chrY 15382786 15383101 -36130483 - MER57B LTR ERV1 -114 320 1 234 214 0 57 chrY 15383427 15383497 -36130087 + LTR66 LTR ERVL 398 463 -147 273 98 0 0 chrY 15383497 15383538 -36130046 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 217 77 51 0 chrY 15383538 15383577 -36130007 + CT-rich Low_complexity Low_complexity 3 43 0 6567 42 0 2 chrY 15383609 15384810 -36128774 + L1PA3 LINE L1 4589 5786 -369 39528 57 32 2 chrY 15384813 15390779 -36122805 + L1PA3 LINE L1 2 6155 0 2979 66 0 0 chrY 15390795 15391176 -36122408 + L1PA3 LINE L1 5770 6150 -5 2251 148 16 11 chrY 15391281 15391653 -36121931 - THE1C LTR MaLR -1 374 1 562 200 45 0 chrY 15391745 15391855 -36121729 + FRAM SINE Alu 41 155 -21 239 308 15 0 chrY 15392183 15392242 -36121342 + MER58 DNA MER1_type 3 62 -153 247 279 0 15 chrY 15392242 15392310 -36121274 - LTR29 LTR ERV1 0 622 556 317 217 23 158 chrY 15392310 15392529 -36121055 - L1M4 LINE L1 -2930 3216 3048 2054 158 33 25 chrY 15392529 15392890 -36120694 + THE1B LTR MaLR 1 364 0 317 217 23 158 chrY 15392890 15392974 -36120610 - L1M4 LINE L1 -3098 3048 2954 28 0 0 0 chrY 15393060 15393088 -36120496 + AT_rich Low_complexity Low_complexity 1 28 0 2074 117 7 0 chrY 15393329 15393635 -36119949 + AluY SINE Alu 6 313 0 522 288 38 50 chrY 15393698 15394098 -36119486 + L1ME2 LINE L1 5616 6010 -154 1960 164 30 14 chrY 15394198 15394565 -36119019 + THE1C LTR MaLR 3 375 0 35862 42 3 1 chrY 15395873 15401214 -36112370 + L1PA2 LINE L1 678 6155 0 964 132 0 13 chrY 15401214 15401373 -36112211 - L1P3 LINE L1 -540 5632 5476 * 7340 141 20 13 chrY 15401369 15402824 -36110760 - L1P3 LINE L1 -683 5489 4112 1978 196 41 19 chrY 15403837 15404125 -36109459 + L1PA16 LINE L1 5729 6030 -136 1060 176 152 59 chrY 15404125 15404448 -36109136 - THE1A LTR MaLR 0 355 3 1978 196 41 19 chrY 15404448 15404578 -36109006 + L1PA16 LINE L1 6030 6156 -10 1013 278 27 64 chrY 15404687 15405002 -36108582 - MLT1D LTR MaLR 0 505 215 2934 115 11 11 chrY 15405002 15405455 -36108129 - L1PA10 LINE L1 -6 6162 5710 1013 278 27 64 chrY 15405455 15405654 -36107930 - MLT1D LTR MaLR -290 215 10 1080 222 9 0 chrY 15406592 15406822 -36106762 + MER46A DNA MER2_type 1 232 -4 1945 171 0 0 chrY 15406859 15407158 -36106426 + AluSx SINE Alu 1 299 -13 22 0 0 0 chrY 15407201 15407223 -36106361 + AT_rich Low_complexity Low_complexity 1 22 0 2295 67 6 13 chrY 15407845 15408158 -36105426 - AluY SINE Alu 0 311 1 284 181 52 17 chrY 15408830 15408946 -36104638 + (TA)n Simple_repeat Simple_repeat 2 121 0 249 136 61 8 chrY 15408958 15409090 -36104494 + (TA)n Simple_repeat Simple_repeat 2 140 0 274 254 36 7 chrY 15409108 15409246 -36104338 + (TA)n Simple_repeat Simple_repeat 2 143 0 2076 179 42 28 chrY 15409546 15410003 -36103581 + LTR29 LTR ERV1 160 622 0 451 294 108 49 chrY 15410107 15410559 -36103025 - L1M4 LINE L1 -1318 4828 4350 17453 150 18 93 chrY 15410742 15411113 -36102471 + L1P LINE L1 12 410 -5736 189 0 0 0 chrY 15411113 15411134 -36102450 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 17453 150 18 93 chrY 15411134 15413570 -36100014 + L1P LINE L1 410 2409 -3737 2119 139 0 0 chrY 15413570 15413872 -36099712 + AluY SINE Alu 1 302 -9 17453 150 18 93 chrY 15413872 15415181 -36098403 + L1P LINE L1 2409 3816 -2330 5034 95 29 6 chrY 15415223 15415950 -36097634 + L1PA7 LINE L1 5411 6154 0 1405 208 14 27 chrY 15416027 15416321 -36097263 + AluJo SINE Alu 5 294 -18 1419 211 70 103 chrY 15416330 15416798 -36096786 - LTR8 LTR ERV1 -3 688 272 1072 183 8 50 chrY 15416813 15417053 -36096531 - AluJo SINE Alu -10 302 73 822 225 54 27 chrY 15417063 15417285 -36096299 - LTR8 LTR ERV1 -463 228 1 697 258 74 0 chrY 15417450 15417706 -36095878 + MER33 DNA MER1_type 7 281 -43 344 272 106 28 chrY 15418025 15418205 -36095379 + LTR67 LTR ERVL 358 551 -6 1614 186 3 3 chrY 15418359 15418644 -36094940 - AluJb SINE Alu -19 293 9 278 131 0 14 chrY 15418665 15418718 -36094866 - AluJb SINE Alu -178 124 85 288 0 0 0 chrY 15418946 15418978 -36094606 + (TG)n Simple_repeat Simple_repeat 2 33 0 955 160 0 19 chrY 15418995 15419151 -36094433 - FRAM SINE Alu -28 148 1 229 130 0 0 chrY 15419163 15419209 -36094375 + LTR66 LTR ERVL 394 439 -171 529 203 7 0 chrY 15419218 15419521 -36094063 + (TA)n Simple_repeat Simple_repeat 1 305 0 246 32 0 0 chrY 15419521 15419552 -36094032 + (GA)n Simple_repeat Simple_repeat 2 32 0 412 264 30 12 chrY 15419553 15419671 -36093913 - FLAM_C SINE Alu -22 111 6 1709 176 3 17 chrY 15419774 15420075 -36093509 + AluSx SINE Alu 3 299 -13 396 88 0 0 chrY 15420599 15420656 -36092928 + (TAA)n Simple_repeat Simple_repeat 2 58 0 1612 189 11 4 chrY 15420664 15420945 -36092639 - AluSx SINE Alu -27 285 3 1379 206 20 10 chrY 15421191 15421487 -36092097 - AluJb SINE Alu -1 311 13 21 0 0 0 chrY 15421504 15421525 -36092059 + AT_rich Low_complexity Low_complexity 1 21 0 976 170 108 18 chrY 15422081 15422331 -36091253 + MER49 LTR ERV1 1 294 -629 1063 257 31 25 chrY 15422358 15422681 -36090903 + MER4D LTR ERV1 541 865 -38 237 180 0 0 chrY 15422685 15422735 -36090849 + CT-rich Low_complexity Low_complexity 3 52 0 1583 216 7 0 chrY 15422990 15423277 -36090307 + AluJb SINE Alu 1 289 -23 2189 90 4 0 chrY 15423292 15423571 -36090013 + AluY SINE Alu 30 309 -2 27 29 0 0 chrY 15423737 15423771 -36089813 + AT_rich Low_complexity Low_complexity 1 34 0 2049 148 0 3 chrY 15424124 15424427 -36089157 - AluSx SINE Alu -2 310 9 1307 189 10 56 chrY 15424532 15424838 -36088746 + AluJo SINE Alu 15 306 -6 1690 183 60 0 chrY 15425468 15425752 -36087832 - AluSx SINE Alu -11 301 1 4031 75 35 20 chrY 15426319 15427341 -36086243 - MER11A LTR ERVK 0 1266 1 1866 127 23 52 chrY 15427347 15427655 -36085929 + AluY SINE Alu 1 299 -12 334 326 110 37 chrY 15427676 15428105 -36085479 - L1M4 LINE L1 -1564 4582 4123 1392 241 0 3 chrY 15428231 15428526 -36085058 - AluJb SINE Alu -6 306 13 682 202 0 167 chrY 15428970 15429140 -36084444 + AluJb SINE Alu 85 199 -113 1691 173 0 58 chrY 15429140 15429452 -36084132 + AluSx SINE Alu 1 294 -18 682 202 0 167 chrY 15429452 15429539 -36084045 + AluJb SINE Alu 199 299 -13 1467 239 131 48 chrY 15429571 15430253 -36083331 - LTR68 LTR ERV1 0 740 3 2771 183 18 52 chrY 15430359 15430873 -36082711 + MER41B LTR ERV1 1 490 -145 2320 101 0 0 chrY 15430873 15431180 -36082404 - AluY SINE Alu -2 309 3 2771 183 18 52 chrY 15431180 15431322 -36082262 + MER41B LTR ERV1 490 635 0 432 308 114 73 chrY 15431323 15431953 -36081631 - L1M4 LINE L1 -2503 3643 2988 1273 187 28 44 chrY 15431955 15432276 -36081308 + LTR8 LTR ERV1 1 316 -375 15676 158 48 104 chrY 15432318 15436678 -36076906 + L1P LINE L1 12 4125 -2021 7308 91 14 6 chrY 15436678 15437677 -36075907 + LTR13 LTR ERVK 1 1007 0 820 216 11 6 chrY 15437677 15437858 -36075726 + HERVK13 LTR ERVK 1 182 -7934 585 224 6 26 chrY 15438162 15438318 -36075266 + HERVK13 LTR ERVK 1078 1230 -6886 473 289 38 0 chrY 15438365 15438524 -36075060 + HERVK13 LTR ERVK 3949 4113 -4003 10202 252 13 8 chrY 15438538 15441955 -36071629 + HERVK13 LTR ERVK 4572 8116 0 7504 93 12 0 chrY 15441955 15442950 -36070634 + LTR13 LTR ERVK 1 1007 0 7519 133 10 2 chrY 15442950 15444971 -36068613 + L1PA7 LINE L1 4120 6139 -15 243 0 0 0 chrY 15444971 15444998 -36068586 + (TA)n Simple_repeat Simple_repeat 2 28 0 530 122 0 11 chrY 15444998 15445088 -36068496 + (CA)n Simple_repeat Simple_repeat 2 90 0 21 0 0 0 chrY 15445090 15445111 -36068473 + AT_rich Low_complexity Low_complexity 1 21 0 779 244 84 45 chrY 15445583 15445970 -36067614 - Charlie5 DNA MER1_type -1498 1126 711 3654 148 54 19 chrY 15445970 15446286 -36067298 + L1PA13 LINE L1 5439 5742 -421 1863 153 0 3 chrY 15446286 15446593 -36066991 + AluSc SINE Alu 1 306 0 3654 148 54 19 chrY 15446593 15446957 -36066627 + L1PA13 LINE L1 5742 6144 -19 779 244 84 45 chrY 15446957 15447105 -36066479 - Charlie5 DNA MER1_type -1913 711 570 1036 149 52 0 chrY 15447840 15448034 -36065550 + L1PA14 LINE L1 5957 6160 -1 2344 176 56 71 chrY 15448196 15448731 -36064853 - MER1A DNA MER1_type 0 527 1 257 339 17 0 chrY 15448774 15448892 -36064692 - LTR16A1 LTR ERVL 0 457 338 1994 141 3 3 chrY 15449524 15449815 -36063769 - AluSq SINE Alu -22 291 1 1545 216 11 3 chrY 15450016 15450303 -36063281 + AluSx SINE Alu 1 289 -23 21 0 0 0 chrY 15450304 15450325 -36063259 + AT_rich Low_complexity Low_complexity 1 21 0 2185 109 0 10 chrY 15450363 15450665 -36062919 - AluY SINE Alu -12 299 1 221 216 0 20 chrY 15451676 15451727 -36061857 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 487 278 20 0 chrY 15451811 15451962 -36061622 + MER20 DNA MER1_type 66 219 0 3037 125 4 2 chrY 15452117 15452636 -36060948 - L1P LINE L1 -942 5204 4685 333 0 0 0 chrY 15452646 15452683 -36060901 + (TTA)n Simple_repeat Simple_repeat 3 39 0 28881 56 2 2 chrY 15452683 15457348 -36056236 - L1PA3 LINE L1 -18 6137 1472 437 165 0 0 chrY 15457339 15457418 -36056166 - L1P LINE L1 -1477 4669 4591 * 225 0 0 0 chrY 15457685 15457710 -36055874 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chrY 15458972 15458995 -36054589 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 2111 189 42 14 chrY 15458999 15459501 -36054083 + L1MA7 LINE L1 5776 6291 0 1860 168 0 10 chrY 15459526 15459824 -36053760 + AluSx SINE Alu 1 295 -17 208 106 85 0 chrY 15460101 15460148 -36053436 + (TTTAG)n Simple_repeat Simple_repeat 3 53 0 1779 171 20 7 chrY 15460343 15460642 -36052942 + AluJb SINE Alu 1 303 -9 420 273 0 22 chrY 15461183 15461322 -36052262 - MER20 DNA MER1_type -31 188 53 1110 163 5 7 chrY 15461360 15461587 -36051997 + L1MA7 LINE L1 5744 5969 -322 287 182 80 0 chrY 15461613 15461701 -36051883 - MER53 DNA DNA 0 189 95 2044 158 0 0 chrY 15462563 15462855 -36050729 + AluSg SINE Alu 1 292 -18 609 219 0 0 chrY 15463038 15463193 -36050391 + (ATG)n Simple_repeat Simple_repeat 2 156 0 686 216 6 0 chrY 15463228 15463404 -36050180 + (ATG)n Simple_repeat Simple_repeat 3 179 0 22 0 0 0 chrY 15463457 15463479 -36050105 + AT_rich Low_complexity Low_complexity 1 22 0 1972 141 0 20 chrY 15463572 15463871 -36049713 + AluSc SINE Alu 2 294 -15 1880 201 13 0 chrY 15465415 15465804 -36047780 - L1PA16 LINE L1 -9 6157 5764 420 36 0 179 chrY 15466311 15466395 -36047189 - MADE1 DNA Mariner 0 80 12 365 80 0 0 chrY 15466417 15466467 -36047117 - MADE1 DNA Mariner -30 50 1 468 159 80 43 chrY 15467333 15467471 -36046113 + MER53 DNA DNA 36 178 -11 323 81 0 16 chrY 15467761 15467823 -36045761 + L1MA1 LINE L1 6242 6302 0 312 70 0 0 chrY 15467872 15467915 -36045669 + (CA)n Simple_repeat Simple_repeat 2 44 0 38963 52 22 2 chrY 15468051 15474082 -36039502 + L1PA3 LINE L1 1 6152 -3 28 0 0 0 chrY 15474082 15474110 -36039474 + AT_rich Low_complexity Low_complexity 1 28 0 511 149 55 0 chrY 15474902 15475003 -36038581 - L1PA15 LINE L1 -43 6131 6024 255 79 0 0 chrY 15475011 15475049 -36038535 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 232 200 0 33 chrY 15475065 15475125 -36038459 - AluSc SINE Alu -8 291 234 1806 183 43 0 chrY 15475125 15475497 -36038087 - L1PA15 LINE L1 -251 5914 5527 266 211 0 0 chrY 15475497 15475549 -36038035 + LTR30 LTR ERV1 1 52 -670 1688 198 17 98 chrY 15475549 15476084 -36037500 + LTR12 LTR ERV1 55 2225 -213 332 125 31 0 chrY 15476084 15476148 -36037436 - L1PA15 LINE L1 -639 5529 5464 223 222 28 0 chrY 15476368 15476440 -36037144 + (TTTA)n Simple_repeat Simple_repeat 1 74 0 265 258 47 74 chrY 15477357 15477547 -36036037 + L1M4 LINE L1 3297 3481 -2665 361 344 45 49 chrY 15477617 15477861 -36035723 + L1M4 LINE L1 3503 3745 -2401 27 62 0 0 chrY 15478191 15478239 -36035345 + AT_rich Low_complexity Low_complexity 1 48 0 1228 173 150 28 chrY 15478406 15478660 -36034924 + AluSx SINE Alu 1 285 -27 290 304 20 0 chrY 15478847 15478949 -36034635 - MER5A DNA MER1_type -77 112 9 3156 165 2 19 chrY 15479331 15479865 -36033719 - MER1A DNA MER1_type 0 527 3 1679 198 48 23 chrY 15480828 15480898 -36032686 - THE1B LTR MaLR 0 428 361 2002 149 0 0 chrY 15480898 15481180 -36032404 + AluSg SINE Alu 1 282 -28 1679 198 48 23 chrY 15481180 15481516 -36032068 - THE1B LTR MaLR -67 361 1 3063 177 3 17 chrY 15481522 15482126 -36031458 + L1PB4 LINE L1 5558 6153 -3 1144 131 29 29 chrY 15482350 15482604 -36030980 + Tigger2 DNA MER2_type 3 2547 -171 1737 191 72 3 chrY 15483135 15483329 -36030255 + MSTA LTR MaLR 1 180 -248 237 33 0 0 chrY 15483329 15483359 -36030225 + (CA)n Simple_repeat Simple_repeat 2 31 0 1737 191 72 3 chrY 15483359 15483541 -36030043 + MSTA LTR MaLR 180 403 -25 806 152 17 17 chrY 15483546 15483724 -36029860 + CT-rich Low_complexity Low_complexity 2 179 0 1682 196 4 0 chrY 15483724 15483999 -36029585 - AluSg SINE Alu -34 276 1 252 0 0 0 chrY 15484852 15484880 -36028704 + (A)n Simple_repeat Simple_repeat 1 28 0 793 230 25 5 chrY 15485198 15485398 -36028186 + L1PA16 LINE L1 5949 6152 -14 1634 223 65 30 chrY 15485455 15485930 -36027654 + MLT2B1 LTR ERVL 3 494 -26 1944 225 38 60 chrY 15486780 15487447 -36026137 - L1MB7 LINE L1 -13 6171 5520 272 192 13 39 chrY 15487816 15487894 -36025690 - L1MB7 LINE L1 -627 5547 5472 3128 197 22 22 chrY 15488004 15488761 -36024823 + L1PB4 LINE L1 5392 6148 -8 25 51 0 0 chrY 15488797 15488836 -36024748 + AT_rich Low_complexity Low_complexity 1 39 0 282 259 112 101 chrY 15490098 15490310 -36023274 + L2 LINE L2 3025 3242 -71 2431 179 38 45 chrY 15490310 15490840 -36022744 + MER1A DNA MER1_type 1 526 -1 282 259 112 101 chrY 15490840 15490913 -36022671 + L2 LINE L2 3242 3313 0 740 244 38 109 chrY 15491000 15491393 -36022191 + MLT1A1 LTR MaLR 1 365 0 489 187 0 0 chrY 15491509 15491600 -36021984 + MER68 LTR ERV1 1 91 -471 612 287 64 14 chrY 15491642 15491988 -36021596 - MLT1C LTR MaLR -3 464 6 625 222 28 0 chrY 15492036 15492180 -36021404 + MER68 LTR ERV1 142 289 -273 873 151 24 0 chrY 15492246 15492412 -36021172 - L1MA5A LINE L1 -185 6112 5943 1803 154 0 92 chrY 15492412 15492451 -36021133 - L1PA13 LINE L1 -7 6156 6115 1827 163 24 37 chrY 15492451 15492831 -36020753 + THE1C LTR MaLR 1 375 0 1803 154 0 92 chrY 15492831 15493038 -36020546 - L1PA13 LINE L1 -48 6115 5959 1908 153 27 0 chrY 15493038 15493338 -36020246 - AluSg SINE Alu -2 308 1 1803 154 0 92 chrY 15493338 15493493 -36020091 - L1PA13 LINE L1 -204 5959 5791 2105 177 74 6 chrY 15493647 15494122 -36019462 - L1PB4 LINE L1 -9 6147 5641 4575 111 49 85 chrY 15494233 15495090 -36018494 - LTR12 LTR ERV1 0 826 1 624 249 56 53 chrY 15495265 15495550 -36018034 - pTR5 LTR ERV1 -1410 1028 743 1575 225 10 7 chrY 15496044 15496351 -36017233 - AluJo SINE Alu -4 308 1 851 159 0 0 chrY 15496361 15496487 -36017097 - FLAM_C SINE Alu -17 126 1 2754 20 0 0 chrY 15496542 15496847 -36016737 + AluY SINE Alu 1 305 -6 1549 241 50 67 chrY 15497021 15497278 -36016306 - MER68 LTR ERV1 -11 551 291 2083 138 3 10 chrY 15497278 15497590 -36015994 + AluSx SINE Alu 1 310 -2 1549 241 50 67 chrY 15497590 15497887 -36015697 - MER68 LTR ERV1 -271 291 6 23 0 0 0 chrY 15497892 15497915 -36015669 + AT_rich Low_complexity Low_complexity 1 23 0 1596 199 0 9 chrY 15498106 15498428 -36015156 - L1PB4 LINE L1 0 6156 5838 1186 219 50 26 chrY 15498484 15498637 -36014947 - L1MB7 LINE L1 -21 6163 6015 1800 163 7 33 chrY 15498637 15498772 -36014812 + AluJo SINE Alu 1 138 -174 225 0 0 0 chrY 15498772 15498797 -36014787 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 333 0 0 0 chrY 15498796 15498833 -36014751 + (CA)n Simple_repeat Simple_repeat 2 38 0 1800 163 7 33 chrY 15498797 15499004 -36014580 + AluJo SINE Alu 138 299 -13 1186 219 50 26 chrY 15499004 15499192 -36014392 - L1MB7 LINE L1 -169 6015 5814 23 78 0 0 chrY 15499605 15499656 -36013928 + AT_rich Low_complexity Low_complexity 1 51 0 2066 155 0 0 chrY 15499656 15499952 -36013632 + AluSg SINE Alu 6 301 -9 2914 127 16 37 chrY 15500093 15500182 -36013402 + L1PA15 LINE L1 5583 5672 -493 1959 141 17 0 chrY 15500182 15500479 -36013105 - AluSq SINE Alu -11 302 1 2914 127 16 37 chrY 15500479 15500901 -36012683 + L1PA15 LINE L1 5672 6083 -82 184 286 107 0 chrY 15501604 15501660 -36011924 + MIR3 SINE MIR 102 163 -45 189 0 0 0 chrY 15501688 15501709 -36011875 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1241 166 17 103 chrY 15501717 15502018 -36011566 - AluJo SINE Alu -37 275 1 281 186 14 0 chrY 15502153 15502223 -36011361 + GA-rich Low_complexity Low_complexity 2 72 0 27 0 0 0 chrY 15502861 15502888 -36010696 + AT_rich Low_complexity Low_complexity 1 27 0 781 213 39 10 chrY 15502994 15503201 -36010383 - L1MB7 LINE L1 -14 6170 5958 1504 151 160 12 chrY 15503354 15503685 -36009899 + MSTA LTR MaLR 1 380 -48 808 153 14 28 chrY 15503685 15503829 -36009755 + AluSg/x SINE Alu 165 306 -6 314 157 0 0 chrY 15503829 15503880 -36009704 + MSTA LTR MaLR 378 428 0 421 135 104 0 chrY 15504265 15504361 -36009223 + L1MA8 LINE L1 6174 6279 -12 303 267 23 0 chrY 15504401 15504487 -36009097 - AluSq/x SINE Alu -171 131 44 22 56 0 0 chrY 15505052 15505088 -36008496 + AT_rich Low_complexity Low_complexity 1 36 0 351 257 59 15 chrY 15505603 15505796 -36007788 - MER93a LTR ERV1 -6 397 198 342 0 0 0 chrY 15505977 15506015 -36007569 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1737 150 0 35 chrY 15506017 15506304 -36007280 - AluSg SINE Alu -33 277 1 1591 214 14 0 chrY 15506438 15506732 -36006852 - AluSx SINE Alu -14 298 1 240 86 0 0 chrY 15506925 15506960 -36006624 + (TG)n Simple_repeat Simple_repeat 2 36 0 1909 168 21 16 chrY 15507063 15507451 -36006133 - LTR23 LTR ERV1 -36 401 12 2131 217 0 10 chrY 15508494 15509010 -36004574 - L1 LINE L1 -1551 4595 4085 953 174 0 0 chrY 15509002 15509186 -36004398 + L1PB1 LINE L1 5611 5794 -357 * 425 88 39 60 chrY 15509187 15509369 -36004215 + (TA)n Simple_repeat Simple_repeat 1 178 0 265 216 0 0 chrY 15509412 15509463 -36004121 - L1P5 LINE L1 -283 5868 5818 475 90 18 58 chrY 15509478 15509705 -36003879 + (TA)n Simple_repeat Simple_repeat 1 217 0 1845 185 11 3 chrY 15509708 15510071 -36003513 + L1PB1 LINE L1 5782 6147 -4 214 95 48 0 chrY 15510152 15510194 -36003390 + CT-rich Low_complexity Low_complexity 3 46 0 310 328 20 20 chrY 15510202 15510400 -36003184 - MLT1C LTR MaLR -162 305 108 327 317 10 0 chrY 15511154 15511258 -36002326 - MER81 DNA DNA 0 114 10 387 229 6 33 chrY 15511498 15511681 -36001903 + (CCTA)n Simple_repeat Simple_repeat 2 179 0 302 237 8 0 chrY 15511773 15511891 -36001693 + (CCTA)n Simple_repeat Simple_repeat 4 122 0 479 269 12 9 chrY 15511906 15512258 -36001326 + (CCTA)n Simple_repeat Simple_repeat 1 353 0 366 231 0 0 chrY 15512275 15512392 -36001192 + (CCTA)n Simple_repeat Simple_repeat 1 117 0 235 179 13 26 chrY 15512429 15512507 -36001077 + (CCTA)n Simple_repeat Simple_repeat 1 77 0 2021 158 0 0 chrY 15514254 15514552 -35999032 - AluY SINE Alu -13 298 1 29 0 0 0 chrY 15514648 15514677 -35998907 + AT_rich Low_complexity Low_complexity 1 29 0 488 323 121 50 chrY 15514692 15514772 -35998812 + L2 LINE L2 209 282 -3032 767 42 0 0 chrY 15514772 15514867 -35998717 - L1PA5 LINE L1 -7 6147 6053 488 323 121 50 chrY 15514867 15515223 -35998361 + L2 LINE L2 282 676 -2638 329 261 115 91 chrY 15515249 15515414 -35998170 - MER5B DNA MER1_type -7 171 3 284 286 118 8 chrY 15515415 15515534 -35998050 + L2 LINE L2 696 827 -2487 2851 158 9 17 chrY 15516464 15517001 -35996583 - L1PB1 LINE L1 -8 6143 5611 1675 210 43 26 chrY 15517002 15517543 -35996041 + MLT2A2 LTR ERVL 1 554 0 818 109 23 0 chrY 15517543 15517671 -35995913 - L1P5 LINE L1 -537 5614 5484 2218 55 7 4 chrY 15517698 15517970 -35995614 - AluY SINE Alu -2 309 37 198 292 112 56 chrY 15519922 15520083 -35993501 + MIR SINE MIR 22 191 -71 601 363 32 7 chrY 15520300 15520565 -35993019 + L2 LINE L2 1168 1442 -1872 1718 160 149 11 chrY 15520565 15520941 -35992643 - MSTA LTR MaLR 0 428 1 601 363 32 7 chrY 15520941 15520959 -35992625 + L2 LINE L2 1442 1458 -1856 1446 208 167 32 chrY 15521095 15521538 -35992046 - MLT2B2 LTR ERVL 0 515 13 673 328 78 51 chrY 15521864 15522014 -35991570 + L2 LINE L2 1507 1651 -1663 1461 229 0 17 chrY 15522014 15522311 -35991273 - AluJo SINE Alu -20 292 1 673 328 78 51 chrY 15522311 15522901 -35990683 + L2 LINE L2 1651 2267 -1047 1064 181 29 47 chrY 15523033 15523283 -35990301 - L1MA4 LINE L1 -1 6299 6053 1226 241 13 23 chrY 15523283 15523586 -35989998 - AluJo SINE Alu -1 301 2 1064 181 29 47 chrY 15523586 15523611 -35989973 - L1MA4 LINE L1 -247 6053 6029 1257 170 5 5 chrY 15523988 15524194 -35989390 - AluSc SINE Alu -21 288 83 545 325 119 36 chrY 15524194 15524965 -35988619 + L2 LINE L2 2441 3278 -35 425 62 35 0 chrY 15524979 15525053 -35988531 + L1PA8A LINE L1 5685 5767 -364 186 71 0 0 chrY 15525058 15525086 -35988498 + (TG)n Simple_repeat Simple_repeat 2 29 0 204 200 0 0 chrY 15525122 15525167 -35988417 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1365 148 36 12 chrY 15525172 15525422 -35988162 + L1PB1 LINE L1 5785 6040 -111 3840 144 103 111 chrY 15525933 15527322 -35986262 + pTR5 LTR ERV1 743 2438 0 882 139 12 48 chrY 15530717 15530882 -35982702 + MER4A LTR ERV1 390 548 -116 * 1348 109 0 35 chrY 15530881 15531082 -35982502 + Charlie3 DNA MER1_type 2513 2706 -4 812 318 8 11 chrY 15531082 15531456 -35982128 + L1ME1 LINE L1 5587 5959 -207 252 267 42 42 chrY 15531484 15531604 -35981980 + L1MA10 LINE L1 6191 6310 -24 1894 159 3 0 chrY 15531977 15532267 -35981317 + AluSp SINE Alu 1 291 -22 2426 146 65 21 chrY 15532951 15533382 -35980202 - L1PA16 LINE L1 -5 6161 5712 989 205 89 35 chrY 15534053 15534311 -35979273 + L1PA16 LINE L1 5879 6150 -16 183 80 0 0 chrY 15535580 15535605 -35977979 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 285 269 79 27 chrY 15536614 15536747 -35976837 + MIR SINE MIR 32 172 -36 43 56 0 0 chrY 15537020 15537091 -35976493 + AT_rich Low_complexity Low_complexity 1 71 0 1107 174 15 20 chrY 15537121 15537316 -35976268 - AluJo SINE Alu -17 295 102 288 164 49 33 chrY 15537317 15537378 -35976206 - AluJo SINE Alu -160 142 81 230 271 62 52 chrY 15538133 15538325 -35975259 + LTR37B LTR ERV1 5 198 -270 2281 201 8 53 chrY 15538528 15539000 -35974584 + MLT2A2 LTR ERVL 1 451 -2 4812 146 48 7 chrY 15539436 15540254 -35973330 + L1PA15 LINE L1 5313 6163 -2 1207 232 4 8 chrY 15541646 15541896 -35971688 - AluJo SINE Alu -40 272 24 3591 181 36 9 chrY 15542027 15542690 -35970894 + L1PA16 LINE L1 5477 6157 -9 23 33 0 0 chrY 15543862 15543892 -35969692 + AT_rich Low_complexity Low_complexity 1 30 0 43698 33 21 3 chrY 15543929 15549972 -35963612 - L1PA2 LINE L1 0 6155 1 212 323 0 0 chrY 15550982 15551044 -35962540 - MIR SINE MIR -75 187 126 685 249 33 17 chrY 15551598 15551779 -35961805 - MER58A DNA MER1_type -24 200 17 198 314 0 0 chrY 15552068 15552119 -35961465 + L2 LINE L2 3214 3264 -8 29 0 0 0 chrY 15552363 15552392 -35961192 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chrY 15552782 15552833 -35960751 + AT_rich Low_complexity Low_complexity 1 51 0 207 172 23 23 chrY 15552840 15552927 -35960657 + A-rich Low_complexity Low_complexity 3 89 0 2281 80 0 20 chrY 15554480 15554779 -35958805 - AluY SINE Alu -13 298 6 27 0 0 0 chrY 15554791 15554818 -35958766 + AT_rich Low_complexity Low_complexity 1 27 0 2363 73 3 13 chrY 15554945 15555259 -35958325 - AluY SINE Alu 0 311 1 1567 205 0 0 chrY 15555669 15555957 -35957627 + AluSx SINE Alu 11 298 -14 250 255 13 121 chrY 15556816 15556973 -35956611 - MIR SINE MIR -16 246 107 800 137 78 65 chrY 15557034 15557187 -35956397 - FAM SINE Alu -21 164 10 306 347 11 0 chrY 15557982 15558077 -35955507 - L2 LINE L2 -1 3271 3176 1390 171 38 51 chrY 15558104 15558396 -35955188 - AluJo SINE Alu -20 292 5 252 0 0 0 chrY 15558514 15558542 -35955042 + (T)n Simple_repeat Simple_repeat 1 28 0 2938 0 0 0 chrY 15558579 15558890 -35954694 - AluY SINE Alu 0 311 1 1056 190 82 51 chrY 15558906 15559222 -35954362 - L1MB8 LINE L1 -9 6169 5844 2878 6 0 3 chrY 15560564 15560876 -35952708 - AluY SINE Alu 0 311 1 1007 170 0 24 chrY 15563997 15564162 -35949422 + AluSx SINE Alu 1 161 -151 30 83 0 0 chrY 15569371 15569443 -35944141 + AT_rich Low_complexity Low_complexity 1 72 0 334 190 0 0 chrY 15570002 15570060 -35943524 + LTR29 LTR ERV1 499 556 -66 195 125 0 0 chrY 15570098 15570138 -35943446 + (TG)n Simple_repeat Simple_repeat 2 41 0 456 240 33 8 chrY 15571362 15571483 -35942101 - MER3 DNA MER1_type -6 203 80 1227 267 29 38 chrY 15571496 15571869 -35941715 - MLT1C LTR MaLR -5 462 92 2249 150 37 55 chrY 15571869 15572303 -35941281 - MSTA LTR MaLR 0 428 3 1227 267 29 38 chrY 15572303 15572349 -35941235 - MLT1C LTR MaLR -375 92 47 2194 242 223 14 chrY 15572349 15572981 -35940603 + MER52A LTR ERV1 1 764 -991 2119 239 57 16 chrY 15572981 15573475 -35940109 + MER52A LTR ERV1 1242 1755 0 2078 110 12 38 chrY 15573767 15574121 -35939463 + AluSx SINE Alu 1 346 0 266 210 97 0 chrY 15574762 15574824 -35938760 - MLT1B LTR MaLR -2 388 321 23 54 0 0 chrY 15574897 15574934 -35938650 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrY 15574941 15574962 -35938622 + AT_rich Low_complexity Low_complexity 1 21 0 51 42 0 0 chrY 15575053 15575125 -35938459 + AT_rich Low_complexity Low_complexity 1 72 0 29 60 0 0 chrY 15575197 15575247 -35938337 + AT_rich Low_complexity Low_complexity 1 50 0 27 49 0 0 chrY 15575273 15575314 -35938270 + AT_rich Low_complexity Low_complexity 1 41 0 22 80 0 0 chrY 15575509 15575559 -35938025 + AT_rich Low_complexity Low_complexity 1 50 0 39 95 0 0 chrY 15575593 15575709 -35937875 + AT_rich Low_complexity Low_complexity 1 116 0 31 0 0 0 chrY 15575765 15575796 -35937788 + AT_rich Low_complexity Low_complexity 1 31 0 1057 215 89 72 chrY 15575833 15576224 -35937360 - MLT1C LTR MaLR -69 398 1 237 148 0 0 chrY 15576416 15576470 -35937114 - L1PA15 LINE L1 0 6165 6112 592 158 150 0 chrY 15576714 15576834 -35936750 + MLT1A1 LTR MaLR 1 138 -227 3204 194 82 90 chrY 15576878 15577597 -35935987 - MER21A LTR ERV1 -38 893 181 1629 167 53 10 chrY 15577597 15577896 -35935688 + AluJb SINE Alu 1 312 0 3204 194 82 90 chrY 15577896 15578056 -35935528 - MER21A LTR ERV1 -750 181 21 189 0 0 0 chrY 15578063 15578084 -35935500 + (TA)n Simple_repeat Simple_repeat 2 22 0 874 232 21 0 chrY 15578124 15578314 -35935270 + MLT1A1 LTR MaLR 172 365 0 798 217 44 0 chrY 15579947 15580127 -35933457 - MER20 DNA MER1_type -1 218 31 9548 29 0 0 chrY 15580796 15582704 -35930880 - L1PA2 LINE L1 -3 6152 4244 3040 20 3 0 chrY 15582704 15583055 -35930529 + L1PA2 LINE L1 3888 4239 -1907 25 0 0 0 chrY 15583407 15583432 -35930152 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrY 15583554 15583578 -35930006 + AT_rich Low_complexity Low_complexity 1 24 0 187 295 309 7 chrY 15584094 15584233 -35929351 - MER5A DNA MER1_type 0 189 9 220 192 19 19 chrY 15584473 15584525 -35929059 + (TA)n Simple_repeat Simple_repeat 2 53 0 314 197 0 53 chrY 15584545 15584621 -35928963 + Tigger2a DNA MER2_type 1 72 -362 1651 187 47 39 chrY 15584678 15584973 -35928611 + Tigger2a DNA MER2_type 79 379 -2339 1882 153 4 0 chrY 15584973 15585254 -35928330 + AluSx SINE Alu 3 284 -28 1651 187 47 39 chrY 15585254 15585321 -35928263 + Tigger2a DNA MER2_type 379 444 0 360 239 54 6 chrY 15585342 15585585 -35927999 + (TA)n Simple_repeat Simple_repeat 1 254 0 798 145 164 0 chrY 15585608 15585767 -35927817 + L1MB3 LINE L1 5662 5847 -334 1715 174 35 0 chrY 15586171 15586453 -35927131 - AluSx SINE Alu -16 296 5 308 294 55 20 chrY 15587003 15587149 -35926435 + MER3 DNA MER1_type 6 156 -53 1164 182 32 4 chrY 15587149 15587187 -35926397 - L1MB3 LINE L1 -19 6164 6129 2597 153 2 30 chrY 15587187 15587213 -35926371 - L1PB4 LINE L1 -7 6149 6124 2221 138 11 35 chrY 15587213 15587419 -35926165 - THE1B LTR MaLR -2 362 166 1673 184 11 3 chrY 15587419 15587746 -35925838 + AluSq SINE Alu 1 329 0 2221 138 11 35 chrY 15587746 15587909 -35925675 - THE1B LTR MaLR -198 166 1 2597 153 2 30 chrY 15587909 15588351 -35925233 - L1PB4 LINE L1 -32 6124 5694 1164 182 32 4 chrY 15588351 15588565 -35925019 - L1MB3 LINE L1 -54 6129 5905 1634 210 30 3 chrY 15588565 15588898 -35924686 - MER7A DNA MER2_type 0 346 7 250 193 53 0 chrY 15588946 15589003 -35924581 + T-rich Low_complexity Low_complexity 3 62 0 1216 258 4 4 chrY 15589003 15589278 -35924306 - AluJb SINE Alu -32 280 6 1537 166 100 0 chrY 15589284 15589585 -35923999 - L1MB3 LINE L1 -308 5872 5542 1764 196 37 6 chrY 15590056 15590409 -35923175 + MLT1A1 LTR MaLR 1 364 -1 208 261 0 43 chrY 15590657 15590726 -35922858 + (CA)n Simple_repeat Simple_repeat 1 66 0 742 125 0 0 chrY 15591384 15591496 -35922088 - L1PA7 LINE L1 -5 6149 6038 566 186 32 8 chrY 15591501 15591625 -35921959 - MLT1C LTR MaLR -331 136 10 1606 140 51 94 chrY 15591815 15592207 -35921377 + THE1C LTR MaLR 1 375 0 212 111 22 0 chrY 15592972 15593017 -35920567 + (TG)n Simple_repeat Simple_repeat 2 47 0 1114 255 119 17 chrY 15593017 15593436 -35920148 + MLT1C LTR MaLR 6 467 0 24 77 0 0 chrY 15593919 15593971 -35919613 + AT_rich Low_complexity Low_complexity 1 52 0 25 100 0 8 chrY 15594223 15594234 -35919350 + AT_rich Low_complexity Low_complexity 1 11 -108 705 167 0 15 chrY 15594234 15594366 -35919218 - FLAM_C SINE Alu -3 130 1 25 100 0 8 chrY 15594366 15594474 -35919110 + AT_rich Low_complexity Low_complexity 11 119 0 233 178 0 0 chrY 15594608 15594653 -35918931 - L1MD2 LINE L1 -17 6342 6298 1062 283 69 58 chrY 15594731 15595296 -35918288 - L1MDa LINE L1 -5377 1163 593 292 320 71 82 chrY 15595355 15595649 -35917935 - MER68 LTR ERV1 -242 320 30 445 269 59 70 chrY 15596080 15596336 -35917248 - MLT1L LTR MaLR -355 260 8 750 84 0 0 chrY 15597269 15597376 -35916208 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 2034 178 9 53 chrY 15597377 15597826 -35915758 + Tigger2a DNA MER2_type 2 430 -4 269 164 14 0 chrY 15597828 15597901 -35915683 + (TA)n Simple_repeat Simple_repeat 1 74 0 617 146 46 6 chrY 15598222 15598535 -35915049 + (TCTA)n Simple_repeat Simple_repeat 1 325 0 548 116 33 44 chrY 15598598 15598779 -35914805 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 231 291 34 54 chrY 15599290 15599438 -35914146 + L2 LINE L2 3086 3230 -83 22 0 0 0 chrY 15599880 15599902 -35913682 + AT_rich Low_complexity Low_complexity 1 22 0 1233 238 37 13 chrY 15599904 15600202 -35913382 + AluJo SINE Alu 1 305 -7 261 0 0 0 chrY 15600541 15600570 -35913014 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 261 301 9 9 chrY 15600802 15600915 -35912669 + CT-rich Low_complexity Low_complexity 2 114 0 316 116 14 14 chrY 15601201 15601270 -35912314 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 411 179 52 35 chrY 15601363 15601536 -35912048 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 249 201 27 27 chrY 15601578 15601727 -35911857 + (TAGA)n Simple_repeat Simple_repeat 3 151 0 373 205 48 0 chrY 15601787 15601870 -35911714 + AluJb SINE Alu 53 139 -163 182 370 0 0 chrY 15601975 15602029 -35911555 + L2 LINE L2 3217 3270 -2 704 233 26 1 chrY 15602058 15602264 -35911320 + L1MA4 LINE L1 5647 5850 -306 2058 116 3 7 chrY 15602444 15602745 -35910839 - AluSq SINE Alu -2 311 12 229 159 0 45 chrY 15602980 15603024 -35910560 + L2 LINE L2 3272 3313 0 3394 188 57 11 chrY 15603455 15603518 -35910066 - L1MA4 LINE L1 -5 6295 6236 1581 168 52 35 chrY 15603518 15603887 -35909697 + THE1C LTR MaLR 1 375 0 3394 188 57 11 chrY 15603887 15604579 -35909005 - L1MA4 LINE L1 -64 6236 5505 22 35 0 0 chrY 15605102 15605131 -35908453 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrY 15606273 15606301 -35907283 + AT_rich Low_complexity Low_complexity 1 28 0 2769 101 16 7 chrY 15606485 15606910 -35906674 - L1MA1 LINE L1 -1 6301 5873 710 102 51 42 chrY 15606910 15607028 -35906556 + L1M1 LINE L1 5660 5778 -524 279 54 0 0 chrY 15607449 15607486 -35906098 + (TG)n Simple_repeat Simple_repeat 2 38 0 1498 201 7 20 chrY 15607833 15608131 -35905453 + AluJo SINE Alu 1 294 -18 806 296 79 38 chrY 15608593 15609612 -35903972 - L1MC/D LINE L1 -572 5592 4562 263 306 83 8 chrY 15609802 15609923 -35903661 - L1MC/D LINE L1 -1842 4304 4175 220 126 63 39 chrY 15609933 15610060 -35903524 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 583 122 38 0 chrY 15610117 15610248 -35903336 + (TCTA)n Simple_repeat Simple_repeat 1 136 0 1486 274 58 63 chrY 15610289 15611468 -35902116 - L1MC/D LINE L1 -2012 4134 2961 1499 192 17 17 chrY 15611472 15611769 -35901815 + MER61A LTR ERV1 47 343 0 499 306 0 0 chrY 15611942 15612135 -35901449 - L1MC/D LINE L1 -3603 2543 2351 580 173 8 75 chrY 15612148 15612281 -35901303 - MER31A LTR ERV1 -361 124 1 1885 213 55 2 chrY 15612317 15612431 -35901153 + LOR1b LTR ERV1 40 147 -314 1578 173 0 0 chrY 15612431 15612679 -35900905 + AluSx SINE Alu 2 249 -63 1885 213 55 2 chrY 15612679 15612963 -35900621 + LOR1b LTR ERV1 147 459 -2 3461 201 27 27 chrY 15613130 15613909 -35899675 + MER4E LTR ERV1 1 779 0 692 148 22 30 chrY 15614129 15614264 -35899320 - LTR7 LTR ERV1 0 450 317 4309 205 24 2 chrY 15614266 15615138 -35898446 - HERVH LTR ERV1 -765 6948 6058 2014 221 9 0 chrY 15615116 15615551 -35898033 - HERVH LTR ERV1 -1949 5764 5326 * 803 119 0 0 chrY 15615554 15615663 -35897921 - HERVH LTR ERV1 -2350 5363 5255 4935 146 3 8 chrY 15615666 15616448 -35897136 - LTR17 LTR ERV1 -2 778 1 1980 134 0 0 chrY 15616448 15616740 -35896844 - HERV17 LTR ERV1 0 8626 8335 274 56 0 0 chrY 15616733 15616769 -35896815 - HERV17 LTR ERV1 -1081 7545 7510 * 4884 62 2 3 chrY 15616762 15617378 -35896206 - HERV17 LTR ERV1 -2607 6019 5405 4762 113 3 0 chrY 15617357 15618009 -35895575 - HERV17 LTR ERV1 -4872 3754 3101 * 1070 93 0 11 chrY 15617989 15618194 -35895390 + HERV17 LTR ERV1 475 709 -7917 * 1938 167 22 14 chrY 15618466 15618831 -35894753 + HERV17 LTR ERV1 703 1070 -7556 3314 142 10 11 chrY 15618837 15619360 -35894224 - HERV17 LTR ERV1 -8103 523 2 2583 203 2 0 chrY 15619360 15619799 -35893785 - LTR17 LTR ERV1 0 780 341 425 192 0 0 chrY 15619792 15619865 -35893719 - HERVH LTR ERV1 -2823 4890 4818 * 2021 151 0 15 chrY 15619858 15620196 -35893388 - LTR17 LTR ERV1 -443 337 5 8050 141 2 4 chrY 15620199 15621466 -35892118 - HERVH LTR ERV1 -2454 5259 3995 298 204 0 0 chrY 15621532 15621586 -35891998 - HERVH LTR ERV1 -3720 3993 3940 794 189 7 0 chrY 15621650 15621798 -35891786 - HERVH LTR ERV1 -4375 3338 3190 288 0 0 0 chrY 15621798 15621830 -35891754 + (T)n Simple_repeat Simple_repeat 1 32 0 13149 174 14 14 chrY 15621830 15624731 -35888853 - HERVH LTR ERV1 -4519 3194 1 2048 111 69 6 chrY 15624731 15625099 -35888485 - LTR7 LTR ERV1 0 450 1 2265 147 38 2 chrY 15625100 15625124 -35888460 - HERVH LTR ERV1 -1 7712 7690 189 0 0 0 chrY 15625124 15625145 -35888439 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2265 147 38 2 chrY 15625145 15625515 -35888069 - HERVH LTR ERV1 -23 7690 7304 1982 115 89 1 chrY 15625516 15625870 -35887714 - LTR7 LTR ERV1 0 450 1 715 218 19 6 chrY 15626024 15626180 -35887404 + LTR8A LTR ERV1 1 158 -569 1374 171 88 11 chrY 15626189 15626452 -35887132 - MER61B LTR ERV1 -29 396 114 1657 206 25 82 chrY 15626459 15626948 -35886636 + LTR8 LTR ERV1 231 691 0 2330 147 33 27 chrY 15627286 15627886 -35885698 - MER4E LTR ERV1 -8 758 1 1017 211 72 4 chrY 15628040 15628305 -35885279 - MER6 DNA MER2_type 0 865 583 2545 164 19 2 chrY 15628311 15628788 -35884796 + MER41B LTR ERV1 110 594 -41 22 88 0 0 chrY 15629369 15629426 -35884158 + AT_rich Low_complexity Low_complexity 1 57 0 5297 158 29 24 chrY 15629474 15630720 -35882864 + L1MA3 LINE L1 5062 6305 0 304 192 0 0 chrY 15631803 15631855 -35881729 - L2 LINE L2 -7 3265 3214 666 156 0 0 chrY 15632257 15632366 -35881218 - FLAM_A SINE Alu -4 138 30 2309 155 15 8 chrY 15633763 15634162 -35879422 + MER57A LTR ERV1 2 403 0 364 247 33 73 chrY 15634417 15634504 -35879080 - MER45A DNA AcHobo -1403 178 98 1059 170 211 68 chrY 15634504 15634769 -35878815 + AluSq SINE Alu 1 303 0 364 247 33 73 chrY 15634769 15634831 -35878753 - MER45A DNA AcHobo -1483 98 35 3166 177 145 27 chrY 15635118 15635857 -35877727 - LTR1B LTR ERV1 0 826 1 1304 204 53 20 chrY 15635944 15636342 -35877242 + L1 LINE L1 4749 5159 -987 324 181 14 14 chrY 15636349 15636421 -35877163 + L1PB3 LINE L1 6080 6151 -3 665 303 0 5 chrY 15636450 15636645 -35876939 - MLT1A2 LTR MaLR 0 374 181 517 185 34 8 chrY 15636645 15636889 -35876695 + GA-rich Low_complexity Low_complexity 1 250 0 248 136 25 25 chrY 15636919 15637000 -35876584 + GA-rich Low_complexity Low_complexity 2 82 0 793 170 12 36 chrY 15637019 15637184 -35876400 - MLT1A2 LTR MaLR -213 161 1 3623 116 0 87 chrY 15637661 15638353 -35875231 - MER4A LTR ERV1 0 664 33 195 69 0 0 chrY 15638365 15638394 -35875190 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 30 0 0 0 chrY 15638394 15638424 -35875160 + AT_rich Low_complexity Low_complexity 1 30 0 1885 173 0 7 chrY 15639340 15639635 -35873949 - AluSc SINE Alu -16 293 1 691 259 0 12 chrY 15639637 15639803 -35873781 - FRAM SINE Alu -2 164 1 194 244 73 61 chrY 15640654 15640736 -35872848 + L2 LINE L2 3227 3309 -4 734 244 63 80 chrY 15640895 15641244 -35872340 + Charlie1a DNA MER1_type 1 343 -1112 * 2345 200 53 90 chrY 15641237 15641540 -35872044 + Charlie1a DNA MER1_type 464 777 -1984 2138 89 6 56 chrY 15641540 15641864 -35871720 + AluY SINE Alu 1 308 -3 2345 200 53 90 chrY 15641864 15642154 -35871430 + Charlie1a DNA MER1_type 777 1076 -1685 2109 83 40 17 chrY 15642154 15642456 -35871128 + AluY SINE Alu 3 311 0 2345 200 53 90 chrY 15642456 15642535 -35871049 + Charlie1a DNA MER1_type 1076 1156 -1605 1174 180 0 151 chrY 15642535 15642905 -35870679 + AluJb SINE Alu 2 319 0 2345 200 53 90 chrY 15642905 15642989 -35870595 + Charlie1a DNA MER1_type 1156 1242 -1519 2063 145 0 0 chrY 15642989 15643293 -35870291 + AluSx SINE Alu 1 304 -8 2345 200 53 90 chrY 15643293 15643559 -35870025 + Charlie1a DNA MER1_type 1242 1454 -1 1565 220 64 10 chrY 15643933 15644324 -35869260 + MER65C LTR ERV1 16 427 -34 197 407 52 30 chrY 15644730 15644865 -35868719 - L2 LINE L2 -8 3264 3127 214 215 25 0 chrY 15645914 15645993 -35867591 + (TA)n Simple_repeat Simple_repeat 1 81 0 810 245 14 5 chrY 15646064 15646272 -35867312 - MER6B DNA MER2_type 0 210 1 300 53 0 0 chrY 15646278 15646316 -35867268 + (TA)n Simple_repeat Simple_repeat 1 38 0 300 264 46 0 chrY 15646349 15646436 -35867148 + L1MC4 LINE L1 6612 6702 -1340 1504 181 11 4 chrY 15648752 15649017 -35864567 - AluSx SINE Alu -45 267 1 492 177 0 10 chrY 15650922 15651018 -35862566 + MLT1B LTR MaLR 12 106 -284 2628 87 16 5 chrY 15651790 15652160 -35861424 - L1PA7 LINE L1 -1 6153 5780 240 358 11 0 chrY 15653715 15653810 -35859774 + MER115 DNA AcHobo 158 253 -440 399 297 87 5 chrY 15654212 15654431 -35859153 + MER115 DNA AcHobo 404 640 -53 234 156 0 0 chrY 15654704 15654749 -35858835 + (TTATG)n Simple_repeat Simple_repeat 5 49 0 423 171 46 34 chrY 15654770 15654945 -35858639 + (TTATG)n Simple_repeat Simple_repeat 1 177 0 181 176 46 46 chrY 15654983 15655091 -35858493 + (TTATG)n Simple_repeat Simple_repeat 2 109 0 681 76 0 0 chrY 15655097 15655202 -35858382 + (CTATG)n Simple_repeat Simple_repeat 1 105 0 3364 142 96 81 chrY 15655227 15656001 -35857583 - LTR1 LTR ERV1 0 785 1 252 0 0 0 chrY 15656048 15656145 -35857439 + (CTATG)n Simple_repeat Simple_repeat 1 125 0 252 0 0 0 chrY 15656145 15656173 -35857411 + (CTATG)n Simple_repeat Simple_repeat 3 30 0 386 183 34 34 chrY 15656227 15656402 -35857182 + (TTATG)n Simple_repeat Simple_repeat 2 176 0 751 183 16 0 chrY 15657284 15657410 -35856174 + FLAM_C SINE Alu 1 128 -5 1174 242 48 21 chrY 15657423 15657712 -35855872 + AluJo SINE Alu 2 298 -4 469 324 99 11 chrY 15659234 15659496 -35854088 - L1M4 LINE L1 -2173 3973 3689 27 0 0 0 chrY 15659520 15659547 -35854037 + AT_rich Low_complexity Low_complexity 1 27 0 849 187 27 0 chrY 15659871 15660058 -35853526 - L1MA5 LINE L1 -163 6137 5946 1872 190 2 42 chrY 15660190 15660596 -35852988 + MLT1B LTR MaLR 1 390 0 25 31 0 0 chrY 15660725 15660757 -35852827 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chrY 15661303 15661342 -35852242 + AT_rich Low_complexity Low_complexity 1 39 0 302 147 37 46 chrY 15661377 15661486 -35852098 + (TA)n Simple_repeat Simple_repeat 1 108 0 274 131 40 57 chrY 15661502 15661677 -35851907 + (TA)n Simple_repeat Simple_repeat 1 172 0 238 254 0 0 chrY 15661689 15661744 -35851840 + (CA)n Simple_repeat Simple_repeat 2 56 0 1482 228 0 14 chrY 15661842 15662136 -35851448 + AluJo SINE Alu 3 292 -20 1217 187 42 0 chrY 15662142 15662404 -35851180 - Tigger3(Golem) DNA MER2_type -2713 316 44 199 245 204 10 chrY 15662588 15662686 -35850898 + MIR SINE MIR 24 140 -68 212 0 36 0 chrY 15662949 15662977 -35850607 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1828 160 24 29 chrY 15663088 15663462 -35850122 + MSTA LTR MaLR 1 372 -56 456 248 0 78 chrY 15663498 15663651 -35849933 - MER20 DNA MER1_type -78 141 1 482 307 94 34 chrY 15664139 15664406 -35849178 - MLT1J LTR MaLR -158 353 71 2842 7 0 0 chrY 15664623 15664928 -35848656 + AluYb8 SINE Alu 13 317 -1 482 224 12 12 chrY 15665109 15665279 -35848305 + CT-rich Low_complexity Low_complexity 3 172 0 852 267 67 28 chrY 15665416 15665858 -35847726 + L1ME1 LINE L1 5683 6157 -9 1920 153 20 0 chrY 15666013 15666313 -35847271 + AluSg SINE Alu 1 306 -4 2119 110 0 0 chrY 15666489 15666798 -35846786 + AluY SINE Alu 1 309 0 1865 211 54 18 chrY 15666864 15667309 -35846275 + LOR1b LTR ERV1 1 461 0 4141 134 92 53 chrY 15667764 15668555 -35845029 - LTR12 LTR ERV1 0 826 5 5795 141 29 7 chrY 15668571 15670034 -35843550 - Harlequin LTR ERV1 0 8399 504 627 105 325 0 chrY 15670032 15670260 -35843324 - Harlequin LTR ERV1 -5755 1141 840 * 26189 116 22 14 chrY 15670257 15675371 -35838213 - Harlequin LTR ERV1 -1935 503 17 1377 198 66 34 chrY 15675376 15675816 -35837768 - pTR5 LTR ERV1 -1242 1196 743 355 293 97 12 chrY 15677631 15677890 -35835694 + L1M4 LINE L1 2676 2956 -3190 2967 171 35 42 chrY 15677965 15678320 -35835264 - L1MA4 LINE L1 -5 6295 5939 1890 158 3 13 chrY 15678320 15678630 -35834954 - AluSc SINE Alu -2 307 1 2967 171 35 42 chrY 15678630 15679011 -35834573 - L1MA4 LINE L1 -361 5939 5564 326 238 0 50 chrY 15680223 15680303 -35833281 + AluJ/FRAM SINE Alu 216 291 -11 201 39 0 0 chrY 15680335 15680361 -35833223 + (TTAGGG)n Simple_repeat Simple_repeat 1 26 0 351 0 0 0 chrY 15680551 15680590 -35832994 + (TA)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chrY 15680589 15680612 -35832972 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 6320 82 45 0 chrY 15681222 15682458 -35831126 - L1PA7 LINE L1 -18 6136 4870 1958 203 113 36 chrY 15682594 15683016 -35830568 + MLT2B2 LTR ERVL 1 466 -49 2057 217 23 2 chrY 15683016 15683490 -35830094 - L1PB4 LINE L1 -4 6152 5669 1958 203 113 36 chrY 15683490 15683545 -35830039 + MLT2B2 LTR ERVL 466 515 0 3564 46 0 0 chrY 15683627 15684061 -35829523 + L1PA4 LINE L1 5719 6152 -3 212 163 0 0 chrY 15684064 15684107 -35829477 + A-rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chrY 15684809 15684846 -35828738 + AT_rich Low_complexity Low_complexity 1 37 0 1250 247 14 14 chrY 15684980 15685305 -35828279 + AluJb SINE Alu 1 325 0 1250 125 5 56 chrY 15685766 15685982 -35827602 - AluY SINE Alu -106 205 1 550 259 89 0 chrY 15686161 15686319 -35827265 + L1MB5 LINE L1 5452 5623 -557 1926 237 14 10 chrY 15686609 15687095 -35826489 + L1MB5 LINE L1 5619 6106 -68 2326 185 21 65 chrY 15688903 15689307 -35824277 - L1PA16 LINE L1 -2 6164 5788 1537 119 26 4 chrY 15689307 15689534 -35824050 - AluSq SINE Alu -2 311 80 2326 185 21 65 chrY 15689534 15689664 -35823920 - L1PA16 LINE L1 -378 5788 5654 363 289 122 51 chrY 15690063 15690416 -35823168 - L2 LINE L2 -2126 1188 811 462 36 0 0 chrY 15690954 15691010 -35822574 + (TA)n Simple_repeat Simple_repeat 2 57 0 860 228 21 13 chrY 15691093 15691330 -35822254 - L1MA7 LINE L1 -2 6289 6051 381 250 0 100 chrY 15691336 15691456 -35822128 - L1MB4 LINE L1 -15 6165 6050 21 71 0 0 chrY 15691472 15691514 -35822070 + AT_rich Low_complexity Low_complexity 1 42 0 401 340 14 0 chrY 15693096 15693243 -35820341 + MLT1C LTR MaLR 316 464 -3 807 231 31 9 chrY 15693245 15693470 -35820114 - MER33 DNA MER1_type -84 240 11 2335 235 97 40 chrY 15693499 15694270 -35819314 + LTR1B LTR ERV1 1 815 -11 3093 148 0 0 chrY 15694455 15694941 -35818643 - MER75 DNA T2_type -21 493 8 606 168 0 0 chrY 15695151 15695258 -35818326 + AluSp/q SINE Alu 197 303 -10 2086 139 0 0 chrY 15695258 15695561 -35818023 + AluY SINE Alu 3 305 -6 22 56 0 0 chrY 15695595 15695631 -35817953 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chrY 15695741 15695772 -35817812 + AT_rich Low_complexity Low_complexity 1 31 0 40432 70 12 2 chrY 15695772 15701866 -35811718 + L1PA4 LINE L1 1 6155 0 6614 64 5 0 chrY 15701866 15702717 -35810867 + L1PA5 LINE L1 5293 6154 0 25 75 0 0 chrY 15702717 15702770 -35810814 + AT_rich Low_complexity Low_complexity 1 53 0 328 281 35 6 chrY 15702869 15703040 -35810544 + (TA)n Simple_repeat Simple_repeat 1 176 0 570 223 20 14 chrY 15703043 15703191 -35810393 - Zaphod DNA AcHobo -3435 596 448 1867 166 3 3 chrY 15703192 15703525 -35810059 - AluSx SINE Alu 0 333 1 733 288 39 82 chrY 15703708 15704146 -35809438 - Zaphod DNA AcHobo -3600 431 13 551 120 0 20 chrY 15704219 15704319 -35809265 - L1MA4A LINE L1 -10 6293 6196 2280 113 3 0 chrY 15704358 15704659 -35808925 - AluY SINE Alu -9 302 1 192 282 0 0 chrY 15704949 15704988 -35808596 + L2 LINE L2 3219 3257 -15 192 125 0 0 chrY 15704992 15705024 -35808560 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 353 283 0 10 chrY 15705234 15705333 -35808251 - MLT1C LTR MaLR -5 462 365 1301 245 31 25 chrY 15705559 15705914 -35807670 - MLT1C LTR MaLR -104 363 7 22 0 0 0 chrY 15708243 15708265 -35805319 + AT_rich Low_complexity Low_complexity 1 22 0 1461 221 0 7 chrY 15708402 15708683 -35804901 + AluJo SINE Alu 15 293 -19 25 65 0 0 chrY 15708701 15708747 -35804837 + AT_rich Low_complexity Low_complexity 1 46 0 1491 142 0 0 chrY 15708762 15708981 -35804603 - AluSg/x SINE Alu -8 302 84 243 286 186 14 chrY 15708999 15709139 -35804445 + MLT1D LTR MaLR 277 440 -65 282 260 29 39 chrY 15709158 15709262 -35804322 + MLT1B LTR MaLR 251 353 -37 1619 205 11 3 chrY 15709264 15709547 -35804037 + AluJb SINE Alu 3 287 -25 335 128 0 0 chrY 15709582 15709629 -35803955 + MLT1B LTR MaLR 342 388 -2 2884 156 106 30 chrY 15709891 15710037 -35803547 - L1MA8 LINE L1 -3 6288 6155 1270 238 46 4 chrY 15710037 15710318 -35803266 - AluJo SINE Alu -5 297 5 2884 156 106 30 chrY 15710318 15710812 -35802772 - L1MA8 LINE L1 -136 6155 5599 2885 6 0 0 chrY 15711116 15711427 -35802157 - AluYa5 SINE Alu 0 311 1 1759 186 7 0 chrY 15711427 15711723 -35801861 - AluSx SINE Alu -14 298 1 22 56 0 0 chrY 15712032 15712068 -35801516 + AT_rich Low_complexity Low_complexity 1 36 0 640 288 76 63 chrY 15712156 15712552 -35801032 + MLT1G1 LTR MaLR 16 391 -164 2711 192 16 99 chrY 15712562 15713092 -35800492 - LTR8 LTR ERV1 0 691 241 194 0 39 0 chrY 15713092 15713118 -35800466 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2711 192 16 99 chrY 15713118 15713341 -35800243 - LTR8 LTR ERV1 -450 241 1 243 336 35 9 chrY 15713373 15713489 -35800095 + MLT1G1 LTR MaLR 471 589 -1 1889 164 0 0 chrY 15713501 15713794 -35799790 - AluSx SINE Alu -19 293 1 279 308 67 78 chrY 15714349 15714723 -35798861 - L2 LINE L2 -1 3312 2943 231 229 53 53 chrY 15715637 15715825 -35797759 - L1M4 LINE L1 -3823 2323 2136 21 0 0 0 chrY 15716254 15716275 -35797309 + AT_rich Low_complexity Low_complexity 1 21 0 1088 82 6 28 chrY 15717447 15717629 -35795955 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1869 165 3 0 chrY 15717637 15717928 -35795656 - AluSq SINE Alu -21 292 1 378 197 0 0 chrY 15717937 15718013 -35795571 - L1PA10 LINE L1 -1 6167 6092 1711 151 20 46 chrY 15718247 15718502 -35795082 + LTR8A LTR ERV1 1 246 -481 2322 144 5 19 chrY 15718502 15718871 -35794713 + THE1B LTR MaLR 1 364 0 1711 151 20 46 chrY 15718871 15718960 -35794624 + LTR8A LTR ERV1 246 336 -391 2314 172 80 17 chrY 15718960 15719436 -35794148 - MER84 LTR ERV1 0 507 2 307 233 27 14 chrY 15719436 15719509 -35794075 - MER84 LTR ERVI -433 74 1 1337 177 101 73 chrY 15719509 15719894 -35793690 + LTR8A LTR ERV1 332 727 0 2605 202 68 15 chrY 15720130 15720720 -35792864 - LTR26E LTR ERV1 0 622 2 511 180 105 161 chrY 15721086 15721391 -35792193 + LTR8 LTR ERV1 1 256 -435 1135 210 61 111 chrY 15721413 15721738 -35791846 + LTR8A LTR ERV1 144 557 -170 2703 175 20 2 chrY 15721738 15722242 -35791342 - MER75 DNA T2_type 0 514 2 1135 210 61 111 chrY 15722242 15722405 -35791179 + LTR8A LTR ERV1 557 727 0 26226 127 27 23 chrY 15722414 15724895 -35788689 - L1PA7 LINE L1 0 6469 4001 288 70 0 0 chrY 15724895 15724938 -35788646 + (TTG)n Simple_repeat Simple_repeat 3 45 0 26226 127 27 23 chrY 15724938 15727796 -35785788 - L1PA7 LINE L1 -2468 4001 1092 1893 142 36 17 chrY 15727818 15728120 -35785464 + AluSg SINE Alu 1 308 -2 25 0 0 0 chrY 15729128 15729153 -35784431 + AT_rich Low_complexity Low_complexity 1 25 0 1326 225 20 27 chrY 15729155 15729448 -35784136 - AluJb SINE Alu -21 291 1 2732 130 42 2 chrY 15729613 15729972 -35783612 - L1PB1 LINE L1 0 6151 5769 408 20 0 0 chrY 15729972 15730021 -35783563 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2732 130 42 2 chrY 15730021 15730116 -35783468 - L1PB1 LINE L1 -382 5769 5679 752 164 19 13 chrY 15730133 15730292 -35783292 - L1MB2 LINE L1 -8 6163 6004 263 281 12 0 chrY 15730298 15730380 -35783204 - L1MB3 LINE L1 -152 6031 5949 303 203 0 0 chrY 15730858 15730927 -35782657 + (CATA)n Simple_repeat Simple_repeat 2 70 0 312 259 35 0 chrY 15730934 15731019 -35782565 + L1MC4 LINE L1 6615 6702 -1340 211 167 0 67 chrY 15731020 15731080 -35782504 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 180 111 0 0 chrY 15731665 15731692 -35781892 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chrY 15732069 15732099 -35781485 + AT_rich Low_complexity Low_complexity 1 30 0 1641 187 3 20 chrY 15732144 15732443 -35781141 + AluJb SINE Alu 18 311 -1 197 244 122 85 chrY 15732462 15732544 -35781040 + L2 LINE L2 3192 3276 -37 1482 206 21 43 chrY 15732559 15732933 -35780651 - MER47A DNA MER2_type 0 366 1 1753 125 56 13 chrY 15733610 15733913 -35779671 - THE1B LTR MaLR 0 364 49 188 331 24 73 chrY 15734860 15734984 -35778600 + L2 LINE L2 2965 3082 -190 1864 228 19 24 chrY 15735201 15735665 -35777919 + MLT1C LTR MaLR 6 467 0 1344 222 11 14 chrY 15736402 15736677 -35776907 - AluJo SINE Alu -38 274 1 1164 203 60 0 chrY 15737178 15737429 -35776155 - L1MB5 LINE L1 -8 6166 5901 360 227 90 36 chrY 15738742 15738987 -35774597 - MLT1I LTR MaLR 0 423 193 756 223 148 30 chrY 15739626 15740123 -35773461 + LTR28 LTR ERV1 1 1251 -456 403 259 20 48 chrY 15740141 15740288 -35773296 + LTR27 LTR ERV1 494 636 0 23 54 0 0 chrY 15740344 15740381 -35773203 + AT_rich Low_complexity Low_complexity 1 37 0 868 205 0 0 chrY 15740549 15740700 -35772884 - FRAM SINE Alu -30 146 1 673 209 0 8 chrY 15740780 15740909 -35772675 - FLAM_A SINE Alu -5 128 1 421 218 0 0 chrY 15740923 15741001 -35772583 - FLAM_A SINE Alu -17 125 48 24 0 0 0 chrY 15741477 15741501 -35772083 + AT_rich Low_complexity Low_complexity 1 24 0 229 353 79 54 chrY 15742519 15742797 -35770787 + L3 LINE CR1 338 622 -955 309 51 0 0 chrY 15742862 15742901 -35770683 + (CA)n Simple_repeat Simple_repeat 2 40 0 2211 174 14 19 chrY 15742905 15743337 -35770247 - Tigger2a DNA MER2_type -3 431 2 204 179 0 0 chrY 15743347 15743386 -35770198 + GA-rich Low_complexity Low_complexity 4 42 0 * 587 150 40 12 chrY 15743383 15743556 -35770028 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 735 180 49 0 chrY 15744191 15744313 -35769271 - AluJo SINE Alu -174 128 1 3119 155 4 0 chrY 15744684 15745175 -35768409 - MER1A DNA MER1_type 0 529 37 1032 168 78 0 chrY 15745442 15745670 -35767914 - MER39B LTR ERV1 0 647 413 7431 29 3 1 chrY 15746552 15747541 -35766043 + L1PA3 LINE L1 5164 6154 -1 308 291 91 6 chrY 15747599 15747764 -35765820 + MIR SINE MIR 80 258 -4 965 211 105 78 chrY 15747924 15748218 -35765366 + AluJo SINE Alu 1 302 0 669 153 22 38 chrY 15748231 15748414 -35765170 + GA-rich Low_complexity Low_complexity 1 180 0 206 100 0 0 chrY 15748414 15748444 -35765140 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 191 152 22 0 chrY 15748445 15748491 -35765093 + GA-rich Low_complexity Low_complexity 3 49 0 878 212 10 20 chrY 15748618 15748821 -35764763 - MLT1E2 LTR MaLR -425 201 1 1003 181 68 17 chrY 15749102 15749339 -35764245 - MLT1B LTR MaLR -4 386 138 262 0 0 0 chrY 15749339 15749369 -35764215 + THE1A LTR MaLR 1 30 -325 420 176 14 0 chrY 15749369 15749443 -35764141 - AluJb SINE Alu -39 273 199 191 250 94 16 chrY 15749482 15749546 -35764038 + MIR SINE MIR 37 105 -157 219 303 18 28 chrY 15751616 15751725 -35761859 - MIR3 SINE MIR -3 205 98 438 288 0 0 chrY 15751772 15751922 -35761662 + FRAM SINE Alu 31 180 0 1360 204 0 4 chrY 15752158 15752408 -35761176 + AluJb SINE Alu 25 273 -39 840 166 10 21 chrY 15752583 15753000 -35760584 + CT-rich Low_complexity Low_complexity 1 412 0 6090 66 2 2 chrY 15753287 15759379 -35754205 + L1PA4 LINE L1 1 6152 -3 1963 156 3 0 chrY 15760719 15761021 -35752563 + AluSc SINE Alu 5 307 -2 1671 189 7 7 chrY 15761081 15761390 -35752194 + AluSx SINE Alu 1 309 0 25 31 0 0 chrY 15762267 15762299 -35751285 + AT_rich Low_complexity Low_complexity 1 32 0 9486 64 6 1 chrY 15762912 15764215 -35749369 - L1P LINE L1 -1482 4664 3355 7392 41 1 0 chrY 15764216 15765757 -35747827 + L1PA3 LINE L1 4614 6155 0 753 259 169 9 chrY 15765772 15765848 -35747736 - LTR52 LTR ERVL -1 420 358 258 105 0 0 chrY 15765848 15765886 -35747698 + (CA)n Simple_repeat Simple_repeat 2 39 0 753 259 169 9 chrY 15765886 15766157 -35747427 - LTR52 LTR ERVL -63 358 17 1128 205 0 68 chrY 15766160 15766423 -35747161 + AluJo SINE Alu 1 245 -67 1102 75 19 0 chrY 15766447 15766608 -35746976 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 683 191 17 6 chrY 15766635 15766813 -35746771 + GA-rich Low_complexity Low_complexity 1 180 0 755 171 6 22 chrY 15766833 15767014 -35746570 + GA-rich Low_complexity Low_complexity 1 178 0 307 143 0 18 chrY 15767014 15767070 -35746514 + (GAAA)n Simple_repeat Simple_repeat 1 55 0 666 183 20 7 chrY 15767070 15767629 -35745955 + GA-rich Low_complexity Low_complexity 1 566 0 251 222 0 14 chrY 15767614 15767686 -35745898 + A-rich Low_complexity Low_complexity 4 74 0 * 688 157 21 12 chrY 15767692 15768112 -35745472 + GA-rich Low_complexity Low_complexity 1 424 0 892 74 5 58 chrY 15768129 15768318 -35745266 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 351 138 12 25 chrY 15768332 15768412 -35745172 + GA-rich Low_complexity Low_complexity 3 81 0 26 0 0 0 chrY 15768916 15768942 -35744642 + AT_rich Low_complexity Low_complexity 1 26 0 2245 80 3 22 chrY 15769203 15769544 -35744040 - AluY SINE Alu 0 311 1 517 178 9 19 chrY 15773030 15773137 -35740447 - MER20 DNA MER1_type -21 198 93 319 234 0 0 chrY 15773168 15773232 -35740352 + AluS SINE Alu 1 64 -244 1681 193 21 48 chrY 15773241 15773661 -35739923 + LTR3 LTR ERVK 8 416 -16 4735 144 34 14 chrY 15773689 15774549 -35739035 + HERVK3 LTR ERVK 31 907 -6336 2341 187 0 0 chrY 15774539 15774950 -35738634 + HERVK3 LTR ERVK 282 692 -6145 * 789 182 47 0 chrY 15775249 15775397 -35738187 + HERVK3 LTR ERVK 2332 2486 -4351 524 143 0 0 chrY 15775815 15775899 -35737685 + HERVK3 LTR ERVK 3474 3557 -3280 3085 124 42 0 chrY 15775914 15776391 -35737193 - LTR6A LTR ERV1 0 564 68 809 181 0 0 chrY 15776428 15776590 -35736994 + HERVK3 LTR ERVK 2027 3807 -3030 2690 144 13 4 chrY 15776592 15777044 -35736540 + HERVK3 LTR ERVK 2458 2913 -4330 1188 86 0 101 chrY 15777028 15777197 -35736387 + HERVK3 LTR ERVK 4119 4265 -2978 * 2192 130 0 0 chrY 15777197 15777504 -35736080 + AluSc SINE Alu 2 308 -1 1188 86 0 101 chrY 15777504 15777543 -35736041 + HERVK3 LTR ERVK 4265 4306 -2937 3643 165 6 3 chrY 15777544 15778211 -35735373 + HERVK3 LTR ERVK 4686 5354 -1889 653 96 0 0 chrY 15778231 15778325 -35735259 + HERVK3 LTR ERVK 7150 7243 0 1865 173 23 51 chrY 15778329 15778762 -35734822 + LTR3 LTR ERVK 5 425 -7 1447 174 8 0 chrY 15778774 15778789 -35734795 + AluSx SINE Alu 60 73 -239 1542 126 0 9 chrY 15778789 15779003 -35734581 - AluY SINE Alu -14 297 86 1447 174 8 0 chrY 15779003 15779234 -35734350 + AluSx SINE Alu 73 308 -4 517 350 16 0 chrY 15779363 15779549 -35734035 + MER5A DNA MER1_type 1 189 0 1414 222 11 3 chrY 15779634 15779918 -35733666 + AluJo SINE Alu 2 287 -15 234 150 0 0 chrY 15779921 15779961 -35733623 + (GA)n Simple_repeat Simple_repeat 1 40 0 825 270 45 8 chrY 15780384 15780794 -35732790 - MLT1D LTR MaLR 0 505 23 348 361 38 6 chrY 15781186 15781344 -35732240 + MIR SINE MIR 88 250 -12 25 31 0 0 chrY 15782460 15782492 -35731092 + AT_rich Low_complexity Low_complexity 1 32 0 757 197 238 83 chrY 15782556 15782977 -35730607 - LTR21A LTR ERV1 -19 486 1 433 216 34 68 chrY 15782993 15783141 -35730443 + HERV9 LTR ERV1 7115 7257 -1142 331 247 0 0 chrY 15783143 15783232 -35730352 - HERVFH21 LTR ERV1 -28 6501 6413 4933 261 17 14 chrY 15783253 15784720 -35728864 - HERVFH21 LTR ERV1 -367 8032 6562 7097 128 22 1 chrY 15785228 15787375 -35726209 - HERVFH21 LTR ERV1 -1196 5333 3074 * 7126 145 16 13 chrY 15787372 15788596 -35724988 - HERVFH21 LTR ERV1 -4238 2291 1065 679 87 0 0 chrY 15788597 15788689 -35724895 - LTR30 LTR ERV1 -630 92 1 574 159 44 9 chrY 15788689 15788800 -35724784 - MER84 LTR ERVI -279 228 114 713 189 0 0 chrY 15788819 15788946 -35724638 - GSAT Satellite centromeric -89 128 2 4802 124 66 39 chrY 15788946 15789750 -35723834 - LTR12 LTR ERV1 0 826 1 6474 107 10 34 chrY 15789754 15790800 -35722784 - HERV9 LTR ERV1 -4 8395 7375 2015 115 3 32 chrY 15790800 15791140 -35722444 - HERV9 LTR ERV1 -1943 6456 6127 * 25055 114 35 5 chrY 15791137 15795055 -35718529 - HERV9 LTR ERV1 -4361 4038 1 5049 116 48 40 chrY 15795055 15795875 -35717709 - LTR12 LTR ERV1 0 826 1 248 246 0 0 chrY 15795884 15795941 -35717643 - MER84 LTR ERVI -450 57 1 678 273 35 23 chrY 15796332 15796737 -35716847 - L1 LINE L1 -2991 3155 2747 1447 217 39 14 chrY 15796737 15797101 -35716483 + THE1C LTR MaLR 1 373 -2 678 273 35 23 chrY 15797101 15797136 -35716448 - L1 LINE L1 -3399 2747 2714 737 284 70 60 chrY 15797166 15798230 -35715354 + L1MEc LINE L1 718 1791 -4605 256 198 10 10 chrY 15798263 15798364 -35715220 + (TA)n Simple_repeat Simple_repeat 1 101 0 22 56 0 0 chrY 15799583 15799619 -35713965 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chrY 15799628 15799656 -35713928 + (TC)n Simple_repeat Simple_repeat 1 28 0 1215 118 0 15 chrY 15802293 15802488 -35711096 - AluY SINE Alu -1 310 119 346 185 0 0 chrY 15802605 15802670 -35710914 - FLAM SINE Alu -13 120 56 589 214 14 21 chrY 15802675 15802815 -35710769 - FRAM SINE Alu -3 173 35 185 94 31 0 chrY 15803538 15803570 -35710014 + T-rich Low_complexity Low_complexity 3 35 0 1411 225 32 0 chrY 15803678 15803845 -35709739 - AluJo SINE Alu -18 294 113 225 0 0 0 chrY 15803845 15803870 -35709714 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1411 225 32 0 chrY 15803870 15803987 -35709597 - AluJo SINE Alu -199 113 1 1926 237 91 25 chrY 15804724 15805404 -35708180 - MER50 LTR ERV1 0 734 10 569 272 30 116 chrY 15805820 15806248 -35707336 + L1MEc LINE L1 2752 3215 -3000 1191 234 16 68 chrY 15806248 15806556 -35707028 + AluJb SINE Alu 1 292 -10 569 272 30 116 chrY 15806556 15806569 -35707015 + L1MEc LINE L1 3215 3228 -2987 240 59 0 0 chrY 15806569 15806603 -35706981 + (CA)n Simple_repeat Simple_repeat 1 34 0 569 272 30 116 chrY 15806603 15806755 -35706829 + L1MEc LINE L1 3228 3295 -2920 2047 52 0 0 chrY 15807059 15807308 -35706276 + L1PA3 LINE L1 5904 6152 -3 364 342 72 16 chrY 15807308 15807627 -35705957 + L1MEc LINE L1 3725 4061 -2154 1319 213 53 18 chrY 15807703 15807985 -35705599 - AluJo SINE Alu -20 292 1 340 215 58 84 chrY 15808123 15808314 -35705270 + L1ME LINE L1 5525 5709 -461 445 114 0 14 chrY 15808625 15808695 -35704889 + MLT1A2 LTR MaLR 2 70 -304 472 184 11 0 chrY 15808749 15808836 -35704748 + AluS SINE Alu 1 88 -225 3215 126 7 0 chrY 15808839 15809379 -35704205 + L1P LINE L1 1962 2505 -3641 348 232 0 0 chrY 15809379 15809461 -35704123 + Tigger5 DNA MER2_type 2241 2322 -1 369 0 0 0 chrY 15809471 15809512 -35704072 + (TG)n Simple_repeat Simple_repeat 1 41 0 628 169 0 25 chrY 15809646 15809764 -35703820 - FRAM SINE Alu -2 174 60 252 59 0 0 chrY 15809782 15809816 -35703768 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 783 186 0 0 chrY 15809819 15809937 -35703647 - FLAM_C SINE Alu -15 118 1 998 162 49 5 chrY 15810522 15810707 -35702877 + THE1C LTR MaLR 1 193 -182 1641 208 41 0 chrY 15810999 15811393 -35702191 - L1MA8 LINE L1 0 6291 5882 1585 209 93 8 chrY 15812388 15812786 -35700798 - MSTB1 LTR MaLR 0 432 1 1375 182 14 7 chrY 15813883 15814163 -35699421 - L1MC1 LINE L1 -2 6331 6050 590 174 10 0 chrY 15814879 15814977 -35698607 + FLAM_C SINE Alu 13 111 -32 282 73 0 0 chrY 15814986 15815027 -35698557 + (CA)n Simple_repeat Simple_repeat 1 41 0 1220 158 133 14 chrY 15816097 15816376 -35697208 - L1PA16 LINE L1 0 6166 5855 323 161 65 0 chrY 15816376 15816438 -35697146 + AluJ/FLAM SINE Alu 8 73 -229 210 71 0 0 chrY 15816630 15816658 -35696926 + (T)n Simple_repeat Simple_repeat 1 28 0 188 33 0 33 chrY 15816703 15816733 -35696851 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 7434 15 1 3 chrY 15816733 15817847 -35695737 - L1HS LINE L1 -10 6145 5033 * 10720 19 0 0 chrY 15817846 15819146 -35694438 + L1HS LINE L1 3761 5060 -1086 3016 113 19 2 chrY 15820410 15820888 -35692696 - LTR15 LTR ERV1 -7 486 1 271 44 0 67 chrY 15820937 15820982 -35692602 + MADE1 DNA Mariner 5 46 -34 654 179 90 6 chrY 15821441 15821597 -35691987 + L1PA15 LINE L1 5952 6120 -45 22 70 0 0 chrY 15821960 15822003 -35691581 + AT_rich Low_complexity Low_complexity 1 43 0 314 60 0 0 chrY 15822043 15822093 -35691491 + Alu SINE Alu 251 300 0 1709 147 0 12 chrY 15822427 15822686 -35690898 + AluSq SINE Alu 1 256 -57 240 35 0 0 chrY 15822694 15822723 -35690861 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 469 273 6 17 chrY 15823376 15823409 -35690175 + (TA)n Simple_repeat Simple_repeat 1 33 -1434 1937 184 58 19 chrY 15823409 15823821 -35689763 - MSTA LTR MaLR 0 428 1 469 273 6 17 chrY 15823821 15823866 -35689718 + (TA)n Simple_repeat Simple_repeat 33 77 -1390 1496 203 0 78 chrY 15823866 15824240 -35689344 + MER7A DNA MER2_type 4 346 0 469 273 6 17 chrY 15824240 15824859 -35688725 + (TA)n Simple_repeat Simple_repeat 77 1467 0 369 291 0 11 chrY 15824928 15825110 -35688474 + (TA)n Simple_repeat Simple_repeat 1 180 0 302 96 19 0 chrY 15825285 15825337 -35688247 + MADE1 DNA Mariner 28 80 0 222 37 0 0 chrY 15825601 15825628 -35687956 + (CA)n Simple_repeat Simple_repeat 2 28 0 1815 149 35 3 chrY 15825982 15826264 -35687320 - AluSx SINE Alu -21 291 1 2216 169 0 8 chrY 15826820 15827187 -35686397 + THE1B LTR MaLR 1 364 0 1321 213 60 25 chrY 15827461 15827792 -35685792 + MLT1A1 LTR MaLR 1 346 -19 1558 187 84 98 chrY 15827792 15828354 -35685230 - MLT2B3 LTR ERVL 0 554 1 1321 213 60 25 chrY 15828354 15828375 -35685209 + MLT1A1 LTR MaLR 346 365 0 620 187 67 0 chrY 15828423 15828573 -35685011 - L1M2 LINE L1 -599 5692 5533 377 198 82 50 chrY 15828574 15828756 -35684828 + L1MA7 LINE L1 6104 6291 0 21 36 0 0 chrY 15828941 15828969 -35684615 + AT_rich Low_complexity Low_complexity 1 28 0 908 120 11 11 chrY 15829910 15830085 -35683499 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 1801 171 4 4 chrY 15830096 15830447 -35683137 + AluSx SINE Alu 1 286 -26 535 193 33 8 chrY 15830481 15831011 -35682573 + (TAGA)n Simple_repeat Simple_repeat 1 543 0 270 180 23 23 chrY 15831027 15831155 -35682429 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 1288 250 59 42 chrY 15831231 15831275 -35682309 - L1ME1 LINE L1 -5 6161 6119 2100 123 0 13 chrY 15831275 15831585 -35681999 - AluSx SINE Alu -6 306 1 1288 250 59 42 chrY 15831585 15832068 -35681516 - L1ME1 LINE L1 -47 6119 5625 1248 206 8 24 chrY 15832783 15833059 -35680525 - AluJb SINE Alu 0 306 35 2447 71 0 3 chrY 15833781 15834091 -35679493 - AluY SINE Alu -2 309 1 192 40 0 0 chrY 15834696 15834721 -35678863 + (TC)n Simple_repeat Simple_repeat 2 26 0 201 229 16 16 chrY 15834721 15834782 -35678802 + (TA)n Simple_repeat Simple_repeat 2 62 0 511 135 28 22 chrY 15834861 15835039 -35678545 + (TA)n Simple_repeat Simple_repeat 2 180 0 466 162 0 27 chrY 15835170 15835355 -35678229 + (TA)n Simple_repeat Simple_repeat 1 180 0 993 208 5 10 chrY 15835399 15835596 -35677988 - AluSx SINE Alu -54 258 63 210 37 0 0 chrY 15835703 15835730 -35677854 + (TG)n Simple_repeat Simple_repeat 2 28 0 1907 226 3 3 chrY 15835911 15836282 -35677302 + MER47B DNA MER2_type 32 402 -16 537 250 0 0 chrY 15836312 15836416 -35677168 - Tigger3(Golem) DNA MER2_type -2 3027 2924 265 211 0 22 chrY 15836579 15836669 -35676915 + (TA)n Simple_repeat Simple_repeat 1 88 0 852 215 6 0 chrY 15836715 15836878 -35676706 - FRAM SINE Alu -2 174 11 1514 167 20 40 chrY 15836899 15837199 -35676385 - AluSq SINE Alu -17 296 3 228 359 93 35 chrY 15837763 15837968 -35675616 + L2 LINE L2 572 764 -2550 1983 149 3 3 chrY 15837968 15838269 -35675315 - AluSx SINE Alu -11 301 1 228 359 93 35 chrY 15838269 15838459 -35675125 + L2 LINE L2 764 990 -2324 1478 210 30 24 chrY 15839308 15839641 -35673943 + MLT1A2 LTR MaLR 1 335 -39 1015 179 0 0 chrY 15839641 15839827 -35673757 - AluSc SINE Alu 0 313 128 1140 51 0 32 chrY 15839853 15840010 -35673574 - L1PA7 LINE L1 0 6154 6003 180 0 0 0 chrY 15840055 15840075 -35673509 + (T)n Simple_repeat Simple_repeat 1 20 0 644 185 118 0 chrY 15840075 15840194 -35673390 - AluSq/x SINE Alu -180 133 1 238 245 0 0 chrY 15840194 15840247 -35673337 + MLT1A2 LTR MaLR 322 374 0 545 200 40 3 chrY 15841812 15841908 -35671676 + (TA)n Simple_repeat Simple_repeat 1 92 -382 564 159 0 32 chrY 15841908 15842034 -35671550 - L1MB4 LINE L1 -12 6168 6047 545 200 40 3 chrY 15842034 15842270 -35671314 + (TA)n Simple_repeat Simple_repeat 92 474 0 456 205 47 0 chrY 15842282 15842453 -35671131 + (TA)n Simple_repeat Simple_repeat 1 179 0 43 35 0 0 chrY 15842480 15842537 -35671047 + AT_rich Low_complexity Low_complexity 1 57 0 225 94 0 0 chrY 15842920 15842952 -35670632 + (T)n Simple_repeat Simple_repeat 1 32 0 362 255 0 65 chrY 15843053 15843195 -35670389 - L1M3 LINE L1 -517 5651 5522 471 217 17 0 chrY 15843199 15843314 -35670270 + L1MB5 LINE L1 5845 5961 -213 180 0 0 0 chrY 15843367 15843387 -35670197 + (T)n Simple_repeat Simple_repeat 1 20 0 7350 144 7 3 chrY 15843717 15845433 -35668151 + HERVL66 LTR ERVL 5 1797 -2532 2889 207 19 2 chrY 15845415 15845955 -35667629 + HERVL66 LTR ERVL 2652 3200 -1129 * 2902 131 9 0 chrY 15845953 15846381 -35667203 + HERVL66 LTR ERVL 3898 4329 0 1936 119 3 29 chrY 15846381 15846560 -35667024 + LTR66 LTR ERVL 1 170 -440 7836 80 4 1 chrY 15846560 15847563 -35666021 + LTR13 LTR ERVK 1 1006 -1 1936 119 3 29 chrY 15847563 15847693 -35665891 + LTR66 LTR ERVL 170 302 -308 1577 188 0 27 chrY 15847695 15848015 -35665569 - AluSx SINE Alu 0 312 1 959 205 19 42 chrY 15848184 15848399 -35665185 + L1MB5 LINE L1 5957 6166 -8 428 228 41 6 chrY 15848433 15848604 -35664980 + (TA)n Simple_repeat Simple_repeat 2 178 0 965 244 92 45 chrY 15848751 15849174 -35664410 - MLT1D LTR MaLR -62 443 1 504 219 0 0 chrY 15849174 15849270 -35664314 + MER90 LTR ERV1 478 573 -2 1897 165 3 7 chrY 15850349 15850658 -35662926 + AluSx SINE Alu 1 308 -4 991 259 103 3 chrY 15850845 15851127 -35662457 - MER7A DNA MER2_type 0 346 39 1813 137 0 4 chrY 15851707 15852007 -35661577 - AluY SINE Alu 0 322 24 3903 98 0 28 chrY 15852134 15852704 -35660880 + MER41A LTR ERV1 1 554 0 30 45 0 0 chrY 15852743 15852787 -35660797 + AT_rich Low_complexity Low_complexity 1 44 0 1813 205 22 37 chrY 15852791 15853131 -35660453 - L1MA7 LINE L1 -1 6290 5957 2500 224 79 13 chrY 15853131 15853813 -35659771 + LTR8A LTR ERV1 1 727 0 1813 205 22 37 chrY 15853813 15853931 -35659653 - L1MA7 LINE L1 -334 5957 5839 4540 100 45 0 chrY 15854058 15854719 -35658865 + LTR8 LTR ERV1 1 691 0 31833 112 31 19 chrY 15854719 15858040 -35655544 + HUERS-P1 LTR ERV1 1 3283 -2980 1858 168 7 0 chrY 15858040 15858331 -35655253 + AluSp SINE Alu 9 301 -12 31833 112 31 19 chrY 15858331 15858900 -35654684 + HUERS-P1 LTR ERV1 3283 3844 -2419 2313 93 0 0 chrY 15858900 15859201 -35654383 - AluY SINE Alu -10 301 1 31833 112 31 19 chrY 15859201 15860101 -35653483 + HUERS-P1 LTR ERV1 3844 4853 -1410 1969 141 14 3 chrY 15860101 15860391 -35653193 - AluSx SINE Alu -19 293 1 31833 112 31 19 chrY 15860391 15860583 -35653001 + HUERS-P1 LTR ERV1 4853 5041 -1222 2864 107 41 3 chrY 15860583 15861062 -35652522 - LTR30 LTR ERV1 0 722 195 3806 138 25 2 chrY 15861066 15861637 -35651947 - HERV30 LTR ERV1 -330 7927 7344 594 83 12 0 chrY 15861630 15861714 -35651870 - HERV30 LTR ERV1 -4795 3462 3378 * 473 92 0 0 chrY 15861715 15861780 -35651804 + HERV30 LTR ERV1 3274 3338 -4919 24539 108 8 5 chrY 15861794 15862462 -35651122 - HERV30 LTR ERV1 -4880 3377 2713 195 42 0 0 chrY 15862462 15862486 -35651098 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 24539 108 8 5 chrY 15862486 15862499 -35651085 - HERV30 LTR ERV1 -5544 2713 2702 2175 119 0 22 chrY 15862499 15862817 -35650767 - AluY SINE Alu 0 311 1 24539 108 8 5 chrY 15862817 15865501 -35648083 - HERV30 LTR ERV1 -5555 2702 1 2981 96 30 1 chrY 15865501 15866160 -35647424 - LTR30 LTR ERV1 0 722 1 7656 129 10 16 chrY 15866160 15867394 -35646190 + HERV30 LTR ERV1 5038 6263 0 2008 153 0 3 chrY 15867410 15867718 -35645866 + AluSc SINE Alu 1 307 -2 4564 125 15 3 chrY 15867729 15868411 -35645173 + LTR8 LTR ERV1 2 691 0 339 320 41 52 chrY 15869035 15869207 -35644377 - MER5B DNA MER1_type -3 175 6 17556 47 11 2 chrY 15869367 15872366 -35641218 - L1PA4 LINE L1 -3 6152 3132 1234 209 9 77 chrY 15873667 15873992 -35639592 + MLT2A2 LTR ERVL 2 304 -149 21 36 0 0 chrY 15873992 15874020 -35639564 + AT_rich Low_complexity Low_complexity 1 28 0 1755 204 0 0 chrY 15874029 15874323 -35639261 - AluSx SINE Alu -18 294 1 922 256 26 44 chrY 15874324 15874594 -35638990 + MLT2B3 LTR ERVL 290 554 0 263 273 55 55 chrY 15874714 15874879 -35638705 + L1MCc LINE L1 289 453 -5970 879 280 56 33 chrY 15874914 15875369 -35638215 + LTR40c LTR ERVL 6 517 -2 35 54 0 0 chrY 15875485 15875541 -35638043 + AT_rich Low_complexity Low_complexity 1 56 0 310 224 0 0 chrY 15875550 15875608 -35637976 + Tigger2 DNA MER2_type 1 58 -2660 455 207 26 86 chrY 15875608 15875655 -35637929 + Tigger2 DNA MER2_type 2610 2658 -60 1276 217 21 31 chrY 15875655 15875945 -35637639 - AluSx SINE Alu -25 287 1 455 207 26 86 chrY 15875945 15876013 -35637571 + Tigger2 DNA MER2_type 2658 2718 0 383 168 68 19 chrY 15876013 15876230 -35637354 + (TA)n Simple_repeat Simple_repeat 1 227 0 566 107 53 6 chrY 15876296 15876465 -35637119 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 1225 284 19 23 chrY 15876469 15876899 -35636685 + L1MD3 LINE L1 7509 7936 -59 2825 7 0 3 chrY 15876960 15877270 -35636314 + AluYa5 SINE Alu 1 309 -2 802 189 43 134 chrY 15877288 15877322 -35636262 + L1MD1 LINE L1 5297 5333 -833 2106 111 0 7 chrY 15877322 15877620 -35635964 + AluY SINE Alu 1 296 -15 802 189 43 134 chrY 15877620 15877935 -35635649 + L1MD1 LINE L1 5333 5614 -552 2379 171 75 7 chrY 15877935 15878669 -35634915 - LTR1B LTR ERV1 0 826 1 858 250 43 54 chrY 15878685 15879099 -35634485 + L1MD1 LINE L1 5617 6018 -148 761 123 8 8 chrY 15879719 15879849 -35633735 - L1MA3 LINE L1 -3 6302 6173 1297 146 71 0 chrY 15879852 15880091 -35633493 + L1MA3 LINE L1 5828 6083 -222 16176 96 7 2 chrY 15881379 15884498 -35629086 - L1PA6 LINE L1 -18 6136 3006 489 108 65 0 chrY 15884509 15884602 -35628982 - L1PA6 LINE L1 -3743 2403 2305 14968 160 40 17 chrY 15884606 15887534 -35626050 - L1P LINE L1 -3142 3004 11 2284 147 10 3 chrY 15888070 15888457 -35625127 - L1PA12 LINE L1 -10 6158 5769 5884 61 0 0 chrY 15888467 15889216 -35624368 - L1PA4 LINE L1 -3 6152 5404 23066 49 94 0 chrY 15889216 15892491 -35621093 + L1PA4 LINE L1 1823 5403 -743 317 125 0 0 chrY 15892485 15892533 -35621051 - L1PA12 LINE L1 -384 5784 5737 * 2328 151 27 2 chrY 15892897 15893324 -35620260 + L1PB1 LINE L1 5736 6172 0 189 0 0 0 chrY 15894204 15894225 -35619359 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 1052 133 8 80 chrY 15894225 15894311 -35619273 + L1MA2 LINE L1 6074 6165 -139 1778 193 0 0 chrY 15894311 15894607 -35618977 + AluSx SINE Alu 4 299 -13 1052 133 8 80 chrY 15894607 15894769 -35618815 + L1MA2 LINE L1 6165 6304 0 21 36 0 0 chrY 15895094 15895122 -35618462 + AT_rich Low_complexity Low_complexity 1 28 0 1873 145 3 14 chrY 15896762 15897042 -35616542 + AluSc SINE Alu 2 280 -29 545 14 29 0 chrY 15897042 15897111 -35616473 + (CTAAA)n Simple_repeat Simple_repeat 3 73 0 1873 145 3 14 chrY 15897111 15897126 -35616458 + AluSc SINE Alu 280 294 -15 655 151 68 155 chrY 15897207 15897472 -35616112 - L1MA8 LINE L1 -57 6234 5993 13042 136 17 9 chrY 15897472 15900555 -35613029 + L1PA7 LINE L1 2952 6061 -93 623 38 0 0 chrY 15900553 15900633 -35612951 - L1P LINE L1 -732 5422 5343 * 4308 168 11 1 chrY 15900632 15901437 -35612147 + L1PA14 LINE L1 5336 6148 -13 21 0 0 0 chrY 15903861 15903882 -35609702 + AT_rich Low_complexity Low_complexity 1 21 0 1731 273 96 4 chrY 15904267 15905173 -35608411 - L1M4 LINE L1 -753 5393 4405 579 303 28 0 chrY 15905182 15905360 -35608224 - AluJo SINE Alu -11 301 119 614 79 11 0 chrY 15905651 15905740 -35607844 + (TC)n Simple_repeat Simple_repeat 1 90 0 524 283 94 23 chrY 15905740 15906005 -35607579 - AluJb SINE Alu -10 302 19 22 70 0 0 chrY 15906489 15906532 -35607052 + AT_rich Low_complexity Low_complexity 1 43 0 349 275 15 18 chrY 15907066 15907133 -35606451 - L1M4 LINE L1 -1760 4386 4320 1754 173 17 0 chrY 15907133 15907428 -35606156 + AluSp SINE Alu 1 300 -13 349 275 15 18 chrY 15907428 15907553 -35606031 - L1M4 LINE L1 -1826 4320 4182 340 201 5 38 chrY 15908289 15908473 -35605111 + (TTAGGG)n Simple_repeat Simple_repeat 3 180 0 213 77 0 58 chrY 15908559 15908611 -35604973 + (TTAGGG)n Simple_repeat Simple_repeat 4 52 0 356 216 7 44 chrY 15908704 15909005 -35604579 + (TTAGGG)n Simple_repeat Simple_repeat 1 289 0 257 218 0 29 chrY 15909159 15909329 -35604255 + (TTAGGG)n Simple_repeat Simple_repeat 5 169 0 293 159 0 14 chrY 15909426 15909495 -35604089 + (TTAGGG)n Simple_repeat Simple_repeat 5 72 0 201 259 20 48 chrY 15909524 15909671 -35603913 + (TTAGGG)n Simple_repeat Simple_repeat 2 144 0 265 194 0 44 chrY 15909689 15909869 -35603715 + (TTAGGG)n Simple_repeat Simple_repeat 4 175 0 331 239 6 43 chrY 15909888 15910051 -35603533 + (TTAGGG)n Simple_repeat Simple_repeat 2 158 0 236 176 15 44 chrY 15910108 15910176 -35603408 + (TTAGGG)n Simple_repeat Simple_repeat 4 69 0 208 154 0 55 chrY 15910203 15910294 -35603290 + (TTAGGG)n Simple_repeat Simple_repeat 5 90 0 233 269 5 11 chrY 15910370 15910556 -35603028 + (TTAGGG)n Simple_repeat Simple_repeat 1 185 0 325 218 5 25 chrY 15910584 15910796 -35602788 + (TTAGGG)n Simple_repeat Simple_repeat 1 207 0 321 197 0 90 chrY 15910814 15910992 -35602592 + (TTAGGG)n Simple_repeat Simple_repeat 5 166 0 434 257 0 18 chrY 15911021 15911252 -35602332 + (TTAGGG)n Simple_repeat Simple_repeat 1 226 0 2247 234 68 20 chrY 15912328 15913043 -35600541 + L1MB5 LINE L1 5415 6164 -10 954 188 37 9 chrY 15913190 15913408 -35600176 - MER50 LTR ERV1 0 734 511 447 286 23 0 chrY 15913416 15913591 -35599993 - L1M4 LINE L1 -901 5245 5067 397 216 99 9 chrY 15913601 15913712 -35599872 + L1MB3 LINE L1 5429 5549 -625 470 180 54 9 chrY 15913716 15913827 -35599757 + L1MB3 LINE L1 6068 6183 0 1227 259 64 47 chrY 15914023 15914645 -35598939 - L1MC3 LINE L1 -1767 6018 5386 1335 224 7 7 chrY 15915439 15915754 -35597830 - AluSx SINE Alu 0 315 1 295 178 65 2 chrY 15916106 15916195 -35597389 - L1MC3 LINE L1 -956 5388 5296 851 230 5 0 chrY 15916307 15916498 -35597086 - AluSg/x SINE Alu 0 312 121 2242 177 5 21 chrY 15916524 15916960 -35596624 - LTR3 LTR ERVK 0 429 1 4486 272 13 2 chrY 15916963 15918189 -35595395 - HERVK3 LTR ERVK -2 7241 6003 1400 211 0 0 chrY 15918197 15918477 -35595107 - HERVK3 LTR ERVK -4055 3188 2909 1995 290 20 40 chrY 15918573 15919445 -35594139 - LTR15-int LTR ERV1 -4580 2416 1536 * 14925 110 10 5 chrY 15919442 15921694 -35591890 - LTR15-int LTR ERV1 -85 8650 6388 * 32008 135 10 11 chrY 15921684 15921733 -35591851 - LTR15-int LTR ERV1 -3512 5223 5175 180 0 0 0 chrY 15921733 15921753 -35591831 + (TA)n Simple_repeat Simple_repeat 2 21 0 32008 135 10 11 chrY 15921753 15926929 -35586655 - LTR15-int LTR ERV1 -3560 5175 1 3098 95 42 8 chrY 15926929 15926978 -35586606 - LTR15 LTR ERV1 0 493 447 410 0 0 20 chrY 15926978 15927029 -35586555 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3098 95 42 8 chrY 15927029 15927452 -35586132 - LTR15 LTR ERV1 -46 447 5 4336 217 47 29 chrY 15927457 15928717 -35584867 + L1PB1 LINE L1 3202 4484 -1662 998 168 23 0 chrY 15928725 15928898 -35584686 + AluSp SINE Alu 135 311 -2 2847 186 40 24 chrY 15928915 15930186 -35583398 + L1PB1 LINE L1 4477 5782 -369 391 188 43 0 chrY 15930186 15930303 -35583281 + (TG)n Simple_repeat Simple_repeat 2 123 0 310 231 33 44 chrY 15930329 15930420 -35583164 + L1MC4 LINE L1 6614 6703 -1339 2014 185 0 0 chrY 15930431 15930793 -35582791 + L1PB1 LINE L1 5782 6143 -8 5788 127 22 34 chrY 15930839 15931964 -35581620 + L1MA1 LINE L1 5191 6302 0 21 0 0 0 chrY 15932589 15932610 -35580974 + AT_rich Low_complexity Low_complexity 1 21 0 1384 233 3 0 chrY 15933311 15933598 -35579986 + AluJo SINE Alu 1 288 -24 303 96 0 0 chrY 15933693 15933745 -35579839 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2006 150 0 0 chrY 15933868 15934162 -35579422 - AluSg SINE Alu -16 294 1 195 69 0 0 chrY 15934598 15934627 -35578957 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chrY 15935051 15935072 -35578512 + AT_rich Low_complexity Low_complexity 1 21 0 3805 248 75 41 chrY 15935109 15936906 -35576678 + L1PA7 LINE L1 10 1815 -4636 9154 148 8 19 chrY 15936918 15939036 -35574548 + L1PA7 LINE L1 4099 6204 -265 2026 147 0 3 chrY 15939036 15939350 -35574234 + AluSp SINE Alu 1 313 0 9154 148 8 19 chrY 15939350 15939609 -35573975 + L1PA7 LINE L1 6204 6464 -5 2164 145 0 0 chrY 15939915 15940226 -35573358 - AluY SINE Alu 0 311 1 2378 87 7 3 chrY 15940991 15941301 -35572283 - AluY SINE Alu 0 311 1 1221 193 8 51 chrY 15941908 15942162 -35571422 + AluJo SINE Alu 56 298 -14 182 358 88 0 chrY 15942780 15942928 -35570656 + MIR SINE MIR 48 208 -54 349 293 66 54 chrY 15943298 15943517 -35570067 - MLT1A1 LTR MaLR 0 365 141 219 36 0 0 chrY 15943517 15943545 -35570039 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 349 293 66 54 chrY 15943545 15943584 -35570000 - MLT1A1 LTR MaLR -224 141 104 465 228 139 72 chrY 15943770 15944068 -35569516 + MLT1E LTR MaLR 323 561 -6 1024 280 31 53 chrY 15944826 15945316 -35568268 - HERV9 LTR ERV1 -5315 1486 1008 603 278 92 48 chrY 15945996 15946291 -35567293 - HERV9 LTR ERV1 -6488 313 6 1455 201 43 7 chrY 15946319 15946622 -35566962 + Tigger3(Golem) DNA MER2_type 2715 3028 -1 1313 309 60 11 chrY 15946658 15947138 -35566446 - MLT1F1 LTR MaLR -7 560 50 5470 187 27 48 chrY 15947138 15948465 -35565119 - HSMAR2 DNA Mariner -1 1301 2 1313 309 60 11 chrY 15948465 15948518 -35565066 - MLT1F1 LTR MaLR -517 50 1 182 300 43 14 chrY 15948539 15948609 -35564975 - L2 LINE L2 -960 2354 2283 2166 148 27 3 chrY 15948853 15949218 -35564366 + Charlie3 DNA MER1_type 2333 2706 -4 294 307 39 31 chrY 15949587 15949714 -35563870 + MIR SINE MIR 11 138 -124 5285 245 71 24 chrY 15950813 15951899 -35561685 + L1MB3 LINE L1 2889 3923 -2260 414 0 0 0 chrY 15951899 15951945 -35561639 + (CA)n Simple_repeat Simple_repeat 1 46 0 5285 245 71 24 chrY 15951945 15953940 -35559644 + L1MB3 LINE L1 3923 6108 -75 362 270 135 25 chrY 15954015 15954215 -35559369 - L1M4 LINE L1 -797 5349 5128 610 189 70 0 chrY 15954233 15954376 -35559208 + L1MB3 LINE L1 6020 6172 -11 308 310 82 82 chrY 15960441 15960686 -35552898 + L1M2 LINE L1 836 1080 -5769 810 318 19 3 chrY 15960839 15961216 -35552368 - HERV9 LTR ERV1 -1593 6163 5781 7418 325 34 24 chrY 15961266 15962402 -35551182 - HERV9 LTR ERV1 -2451 5977 4853 2319 133 5 37 chrY 15962402 15962565 -35551019 + THE1B LTR MaLR 1 168 -196 222 37 0 0 chrY 15962565 15962592 -35550992 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1808 158 4 0 chrY 15962594 15962867 -35550717 - AluSx SINE Alu -16 296 23 2319 133 5 37 chrY 15962867 15963076 -35550508 + THE1B LTR MaLR 169 364 0 7418 325 34 24 chrY 15963076 15965910 -35547674 - HERV9 LTR ERV1 -3575 4853 1658 578 318 6 0 chrY 15967251 15967424 -35546160 - MER41D LTR ERV1 0 557 384 27 0 0 0 chrY 15968029 15968056 -35545528 + AT_rich Low_complexity Low_complexity 1 27 0 1778 179 3 0 chrY 15968063 15968348 -35545236 - AluSx SINE Alu -26 286 1 606 191 103 0 chrY 15968663 15968799 -35544785 + MER4B LTR ERV1 1 150 -460 21 36 0 0 chrY 15968801 15968829 -35544755 + AT_rich Low_complexity Low_complexity 1 28 0 3211 148 14 3 chrY 15968829 15969405 -35544179 - L1MA2 LINE L1 -5 7718 7137 1141 172 4 0 chrY 15969406 15969639 -35543945 - L1MA2 LINE L1 -803 6921 6688 1412 146 111 56 chrY 15969645 15969717 -35543867 - THE1C LTR MaLR 0 428 361 1910 133 4 0 chrY 15969717 15969995 -35543589 - AluSg1 SINE Alu -28 281 3 1412 146 111 56 chrY 15969995 15970316 -35543268 - THE1C LTR MaLR -67 361 1 13303 222 63 20 chrY 15970331 15971324 -35542260 - L1MA2 LINE L1 -896 6669 5721 1625 223 69 10 chrY 15971324 15971728 -35541856 - MSTA LTR MaLR 0 428 1 6703 224 32 17 chrY 15971728 15973354 -35540230 - MSTA-int LTR MaLR 0 1651 1 1764 234 29 12 chrY 15973356 15973775 -35539809 - MSTA LTR MaLR -2 426 1 13303 222 63 20 chrY 15973775 15974152 -35539432 - L1MA2 LINE L1 -1844 5721 5362 1915 168 10 0 chrY 15974152 15974461 -35539123 - AluSx SINE Alu 0 312 1 13303 222 63 20 chrY 15974461 15979460 -35534124 - L1MA2 LINE L1 -2203 5362 18 3045 186 67 13 chrY 15979466 15980183 -35533401 - L1PA16 LINE L1 -21 6145 5390 361 176 0 0 chrY 15980187 15980255 -35533329 + L1PA16 LINE L1 5304 5371 -795 476 280 223 5 chrY 15980913 15981289 -35532295 + MLT1H1 LTR MaLR 47 506 -61 32 57 0 0 chrY 15981289 15981342 -35532242 + AT_rich Low_complexity Low_complexity 1 53 0 6538 31 0 0 chrY 15981639 15982628 -35530956 - L1PA2 LINE L1 -604 5551 4563 5199 23 2 3 chrY 15982629 15983251 -35530333 + L1PA2 LINE L1 5558 6155 0 229 296 169 0 chrY 15983992 15984063 -35529521 - L2 LINE L2 0 3272 3190 199 289 0 0 chrY 15984185 15984230 -35529354 - L2 LINE L2 -8 3305 3261 309 206 63 0 chrY 15984912 15984975 -35528609 - L2 LINE L2 -5 3308 3242 2191 225 21 2 chrY 15985248 15985763 -35527821 + L1PB4 LINE L1 5620 6144 -12 209 296 245 0 chrY 15986599 15986697 -35526887 - L2 LINE L2 -11 3302 3181 212 258 11 22 chrY 15986902 15986991 -35526593 - L2 LINE L2 -1231 2083 1996 296 263 0 0 chrY 15987053 15987133 -35526451 - MER103 DNA DNA -75 91 12 223 250 0 0 chrY 15987139 15987191 -35526393 + (TG)n Simple_repeat Simple_repeat 2 53 0 9561 211 16 19 chrY 15988166 15990487 -35523097 + L1PB1 LINE L1 3016 5330 -816 2913 228 35 2 chrY 15990488 15991278 -35522306 - L1PB1 LINE L1 -798 5348 4533 * 4759 138 9 5 chrY 15991265 15992074 -35521510 + L1PB1 LINE L1 5339 6150 -1 2632 150 23 4 chrY 15992063 15992543 -35521041 + L1PA14 LINE L1 5297 5785 -376 * 914 95 177 0 chrY 15992549 15992707 -35520877 + LTR66 LTR ERVL 3 188 -422 973 125 0 0 chrY 15992709 15992845 -35520739 - AluSx SINE Alu -159 153 18 2341 151 7 30 chrY 15992862 15993078 -35520506 + LTR66 LTR ERVL 191 394 -216 366 23 0 0 chrY 15993078 15993121 -35520463 + (TG)n Simple_repeat Simple_repeat 2 44 0 2341 151 7 30 chrY 15993121 15993334 -35520250 + LTR66 LTR ERVL 394 610 0 231 97 0 0 chrY 15993334 15993365 -35520219 + L1PA14 LINE L1 5782 5812 -342 1677 105 0 16 chrY 15993367 15993615 -35519969 + L1PA14 LINE L1 5912 6155 -6 373 234 0 11 chrY 15993761 15993855 -35519729 + LTR23-int LTR ERV1 3248 3340 -2991 353 217 0 0 chrY 15993933 15994002 -35519582 + LTR23-int LTR ERV1 3372 3440 -2891 392 205 69 100 chrY 15994110 15994428 -35519156 + LTR23-int LTR ERV1 1712 2093 -2970 186 43 0 0 chrY 15994490 15994513 -35519071 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1850 144 0 0 chrY 15994515 15994779 -35518805 - AluSx SINE Alu -31 281 18 29 0 0 0 chrY 15994961 15994990 -35518594 + AT_rich Low_complexity Low_complexity 1 29 0 2401 183 76 9 chrY 15995026 15995568 -35518016 + LTR23-int LTR ERV1 4985 5562 -1975 13444 205 36 41 chrY 15995586 15998737 -35514847 + L1M1 LINE L1 26 3161 -4404 2386 93 0 0 chrY 15998737 15999047 -35514537 + AluY SINE Alu 1 310 -1 13444 205 36 41 chrY 15999047 15999141 -35514443 + L1M1 LINE L1 3161 3254 -4311 712 157 52 0 chrY 15999532 15999647 -35513937 + 5S rRNA rRNA 1 121 0 356 238 0 7 chrY 16000477 16000620 -35512964 + CT-rich Low_complexity Low_complexity 2 143 0 217 310 0 0 chrY 16000635 16000722 -35512862 + (TG)n Simple_repeat Simple_repeat 2 88 0 655 144 34 8 chrY 16001442 16001560 -35512024 + 5S rRNA rRNA 1 121 0 1107 165 49 5 chrY 16002077 16004001 -35509583 - GSATX Satellite centromeric -12 2009 1 1063 199 46 1 chrY 16004016 16005201 -35508383 + GSATX Satellite centromeric 1 1238 0 1038 183 48 11 chrY 16005213 16006719 -35506865 - GSATX Satellite centromeric -8 1562 1 1015 179 38 35 chrY 16006733 16007695 -35505889 - GSATX Satellite centromeric -1 964 1 1047 200 30 3 chrY 16007710 16008949 -35504635 - GSATX Satellite centromeric -21 1272 1 338 115 0 115 chrY 16009186 16009264 -35504320 + AluSc SINE Alu 136 204 -95 220 214 0 24 chrY 16011519 16011603 -35501981 + GA-rich Low_complexity Low_complexity 2 83 0 391 335 85 52 chrY 16011609 16011678 -35501906 + HAL1 LINE L1 921 986 -1521 2329 60 19 32 chrY 16011678 16011993 -35501591 + AluY SINE Alu 1 311 0 391 335 85 52 chrY 16011993 16012311 -35501273 + HAL1 LINE L1 986 1321 -1186 1859 168 0 0 chrY 16013350 16013678 -35499906 + AluSx SINE Alu 3 330 0 1025 202 14 0 chrY 16013687 16013900 -35499684 + PABL_A LTR ERV1 445 660 0 327 190 0 0 chrY 16013900 16013958 -35499626 + Alu SINE Alu 242 299 -2 749 193 0 21 chrY 16014018 16014158 -35499426 + FRAM SINE Alu 17 153 -23 1066 204 132 4 chrY 16014312 16014577 -35499007 + ERVL LTR ERVL 3290 3588 -2176 229 159 68 0 chrY 16014597 16014609 -35498975 + Alu SINE Alu 122 136 -167 273 125 0 0 chrY 16014609 16014649 -35498935 + AluSx SINE Alu 2 41 -261 3774 107 36 2 chrY 16014649 16015208 -35498376 - LTR14C LTR ERVK 0 587 10 1624 191 0 0 chrY 16015209 16015471 -35498113 + AluSx SINE Alu 35 296 -16 23 0 0 0 chrY 16015472 16015495 -35498089 + AT_rich Low_complexity Low_complexity 1 23 0 403 175 0 0 chrY 16015519 16015582 -35498002 + AluS SINE Alu 1 63 -255 1691 168 3 66 chrY 16015645 16015683 -35497901 - AluSp SINE Alu -1 312 273 258 32 0 0 chrY 16015683 16015714 -35497870 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1691 168 3 66 chrY 16015714 16016008 -35497576 - AluSp SINE Alu -40 273 1 2093 135 0 3 chrY 16016010 16016306 -35497278 - AluSg SINE Alu -14 296 2 194 81 27 0 chrY 16017069 16017106 -35496478 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 802 171 7 7 chrY 16017110 16017250 -35496334 + AluJb SINE Alu 2 141 -171 23 68 0 0 chrY 16017267 16017311 -35496273 + AT_rich Low_complexity Low_complexity 1 44 0 1165 184 137 23 chrY 16017385 16017641 -35495943 - AluJb SINE Alu -17 285 1 241 297 165 16 chrY 16017971 16018153 -35495431 + LTR54B LTR ERV1 36 244 -254 1485 203 30 0 chrY 16018216 16018487 -35495097 + AluSg SINE Alu 1 279 -31 1492 172 82 0 chrY 16018753 16019020 -35494564 + AluSx SINE Alu 1 289 -23 361 309 144 45 chrY 16019439 16019815 -35493769 + HAL1 LINE L1 891 1303 -1204 840 255 60 17 chrY 16019837 16019945 -35493639 + AluJb SINE Alu 14 116 -196 561 15 0 0 chrY 16019945 16020011 -35493573 + (TAAAA)n Simple_repeat Simple_repeat 3 68 0 840 255 60 17 chrY 16020011 16020137 -35493447 + AluJb SINE Alu 116 258 -54 323 203 0 0 chrY 16020137 16020201 -35493383 - AluJ/FLAM SINE Alu -205 97 34 514 227 0 0 chrY 16020289 16020377 -35493207 + FRAM SINE Alu 63 150 -26 181 191 0 29 chrY 16020385 16020453 -35493131 + (TAA)n Simple_repeat Simple_repeat 1 66 0 665 192 16 24 chrY 16020556 16020681 -35492903 - AluJb SINE Alu -25 287 164 208 330 9 9 chrY 16020759 16020874 -35492710 + GA-rich Low_complexity Low_complexity 2 116 0 1598 108 5 5 chrY 16022314 16022528 -35491056 + AluSq SINE Alu 4 217 -96 1205 118 0 12 chrY 16022548 16022709 -35490875 - AluSx SINE Alu -152 160 2 1916 168 3 0 chrY 16022778 16023076 -35490508 - AluSq SINE Alu -14 299 1 908 216 16 5 chrY 16023076 16023261 -35490323 - AluJo SINE Alu -8 304 118 730 184 0 22 chrY 16023302 16023438 -35490146 - AluJo SINE Alu -169 133 1 1870 166 0 3 chrY 16023446 16023769 -35489815 - AluSx SINE Alu 0 322 1 2203 109 0 53 chrY 16024630 16024950 -35488634 - AluY SINE Alu -8 303 1 1679 194 7 7 chrY 16024950 16025249 -35488335 - AluSx SINE Alu -13 299 1 180 235 86 49 chrY 16025278 16025359 -35488225 + L2 LINE L2 1754 1837 -1477 2020 141 0 0 chrY 16025605 16025882 -35487702 + AluSx SINE Alu 10 286 -26 218 188 43 0 chrY 16025882 16025951 -35487633 + (TA)n Simple_repeat Simple_repeat 1 72 0 195 162 0 0 chrY 16026222 16026259 -35487325 + A-rich Low_complexity Low_complexity 1 37 0 1085 203 4 38 chrY 16026273 16026534 -35487050 - L1 LINE L1 -3255 3593 3342 1514 138 23 0 chrY 16026556 16026774 -35486810 - AluSq SINE Alu -13 300 78 1128 171 16 16 chrY 16026786 16027037 -35486547 - L1 LINE L1 -4063 2786 2536 23 33 0 0 chrY 16027879 16027909 -35485675 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrY 16028330 16028366 -35485218 + AT_rich Low_complexity Low_complexity 1 36 0 233 312 102 57 chrY 16028916 16029073 -35484511 + MIR3 SINE MIR 30 193 -15 1736 163 7 17 chrY 16029196 16029527 -35484057 + AluSx SINE Alu 1 328 0 509 235 0 0 chrY 16029626 16029728 -35483856 - AluJ SINE Alu -79 233 132 1214 205 33 43 chrY 16029746 16030049 -35483535 + AluJo SINE Alu 2 301 -1 987 198 5 27 chrY 16030187 16030409 -35483175 + AluJo SINE Alu 96 312 0 206 373 57 14 chrY 16030620 16030832 -35482752 - L2 LINE L2 -2031 1283 1063 6774 50 0 0 chrY 16031438 16032296 -35481288 - L1PA3 LINE L1 -1867 4279 3422 8618 39 0 4 chrY 16032315 16034185 -35479399 + L1PA3 LINE L1 4294 6155 0 258 258 174 39 chrY 16034625 16034780 -35478804 - MER5A DNA MER1_type 0 189 14 245 276 71 10 chrY 16034891 16034989 -35478595 - L3 LINE CR1 -167 1410 1307 769 176 8 0 chrY 16035080 16035211 -35478373 - AluJ SINE Alu -178 134 3 1879 133 44 10 chrY 16035254 16035581 -35478003 - AluSq SINE Alu 0 313 1 241 245 0 0 chrY 16035823 16035872 -35477712 + MIR SINE MIR 3 51 -211 890 107 23 23 chrY 16035908 16036085 -35477499 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 866 143 33 15 chrY 16036136 16036473 -35477111 + (CACCAT)n Simple_repeat Simple_repeat 1 343 0 212 264 0 0 chrY 16036476 16036529 -35477055 - MIR SINE MIR -49 213 161 7916 71 42 3 chrY 16038079 16039110 -35474474 + MER11C LTR ERVK 1 1071 0 485 292 167 0 chrY 16039170 16039221 -35474363 + MIR SINE MIR 11 52 -210 1953 176 0 0 chrY 16039221 16039527 -35474057 + AluJo SINE Alu 6 311 -1 485 292 167 0 chrY 16039527 16039691 -35473893 + MIR SINE MIR 52 262 0 199 195 37 85 chrY 16039713 16039795 -35473789 - MIR SINE MIR -8 254 177 1719 179 32 0 chrY 16039840 16040119 -35473465 - AluSx SINE Alu -24 288 1 238 294 32 82 chrY 16040120 16040243 -35473341 - MIR SINE MIR -57 151 60 1707 168 13 36 chrY 16040243 16040552 -35473032 - AluJb SINE Alu -9 303 2 238 294 32 82 chrY 16040552 16040576 -35473008 - MIR SINE MIR -148 60 36 794 286 30 8 chrY 16040610 16040844 -35472740 - MIR SINE MIR -1 261 23 1189 162 74 0 chrY 16041472 16041688 -35471896 + AluSg SINE Alu 1 232 -78 1282 171 7 96 chrY 16042061 16042353 -35471231 - MER4A LTR ERV1 0 664 399 652 352 26 20 chrY 16042350 16042697 -35470887 - LTR40a LTR ERVL -103 416 68 * 1567 177 40 17 chrY 16042960 16043259 -35470325 - AluSx SINE Alu -1 311 6 1451 275 42 31 chrY 16043477 16044193 -35469391 + L1MB4 LINE L1 4308 5031 -1115 2558 218 27 9 chrY 16044234 16044789 -35468795 + L1PA14 LINE L1 3349 3913 -2233 6085 215 27 25 chrY 16044790 16045463 -35468121 + L1PA14 LINE L1 3992 4663 -1498 1914 135 15 0 chrY 16045463 16045737 -35467847 + AluY SINE Alu 1 278 -33 195 42 0 0 chrY 16045743 16045767 -35467817 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6085 215 27 25 chrY 16045767 16046084 -35467500 + L1PA14 LINE L1 4667 4982 -1179 425 19 19 0 chrY 16046084 16046138 -35467446 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 6085 215 27 25 chrY 16046138 16046585 -35466999 + L1PA14 LINE L1 4982 5427 -734 2177 149 0 0 chrY 16046585 16046894 -35466690 + AluSc SINE Alu 1 309 0 6085 215 27 25 chrY 16046894 16047615 -35465969 + L1PA14 LINE L1 5427 6157 -4 449 269 8 0 chrY 16047617 16047751 -35465833 + L1MB4 LINE L1 5022 5156 -990 1195 208 72 74 chrY 16047841 16048314 -35465270 + L1MB4 LINE L1 5174 5629 -551 1239 204 0 5 chrY 16048381 16048601 -35464983 - AluSx SINE Alu -87 225 7 893 211 12 50 chrY 16048673 16048828 -35464756 + L1MB4 LINE L1 5675 5819 -361 1285 243 3 26 chrY 16048828 16049133 -35464451 + AluJb SINE Alu 2 299 -13 893 211 12 50 chrY 16049133 16049219 -35464365 + L1MB4 LINE L1 5819 5907 -273 285 225 62 0 chrY 16049897 16049977 -35463607 + L1M4 LINE L1 3511 3595 -2551 1043 291 47 19 chrY 16049986 16050457 -35463127 + L1M4 LINE L1 3842 4325 -1821 2208 112 10 0 chrY 16050498 16050801 -35462783 - AluSp SINE Alu -7 306 1 517 266 58 0 chrY 16050801 16050955 -35462629 + MER93a LTR ERV1 220 382 -20 1897 134 26 7 chrY 16050962 16051267 -35462317 - AluY SINE Alu 0 311 1 283 283 34 45 chrY 16052235 16052419 -35461165 + HERVFH21 LTR ERV1 676 1530 -6727 484 253 91 81 chrY 16053173 16053556 -35460028 + HERVFH21 LTR ERV1 1765 2151 -4378 346 296 91 56 chrY 16053792 16054362 -35459222 + HERVFH21 LTR ERV1 5182 5769 -1155 422 244 92 23 chrY 16055859 16056033 -35457551 + HERVFH21 LTR ERV1 7001 8266 -261 304 247 25 0 chrY 16056233 16056314 -35457270 + HERVFH21 LTR ERV1 6446 6528 -1 237 178 0 0 chrY 16057149 16057194 -35456390 + C-rich Low_complexity Low_complexity 2 46 0 619 160 7 69 chrY 16057228 16057372 -35456212 - L1PA8A LINE L1 0 6131 5997 252 114 0 0 chrY 16057372 16057407 -35456177 - Alu SINE Alu -262 39 5 5411 123 16 35 chrY 16057408 16058120 -35455464 - L1PA8 LINE L1 -87 6085 5361 1598 163 58 14 chrY 16058120 16058415 -35455169 - AluSg SINE Alu -2 308 1 5411 123 16 35 chrY 16058415 16058781 -35454803 - L1PA8 LINE L1 -811 5361 5043 1584 172 3 56 chrY 16058781 16059083 -35454501 + AluSg SINE Alu 1 286 -24 5411 123 16 35 chrY 16059083 16059442 -35454142 - L1PA8 LINE L1 -1129 5043 4679 218 292 28 0 chrY 16059452 16059524 -35454060 - MIR SINE MIR -81 127 54 290 195 0 61 chrY 16060174 16060256 -35453328 - AluJ/FRAM SINE Alu 0 302 226 1387 228 0 4 chrY 16060294 16060570 -35453014 + AluJo SINE Alu 1 275 -37 456 172 0 0 chrY 16060570 16060657 -35452927 + (TG)n Simple_repeat Simple_repeat 2 88 0 1819 164 4 4 chrY 16065183 16065524 -35448060 - AluSg SINE Alu 0 342 2 186 71 0 0 chrY 16066597 16066625 -35446959 + (CA)n Simple_repeat Simple_repeat 2 29 0 424 289 15 37 chrY 16067958 16068231 -35445353 - L1M4c LINE L1 -4528 1856 1590 * 629 284 53 69 chrY 16068203 16068843 -35444741 - L1M4c LINE L1 -4641 1662 870 1794 161 11 7 chrY 16068843 16069170 -35444414 + AluSx SINE Alu 1 328 0 629 284 53 69 chrY 16069170 16069236 -35444348 - L1M4c LINE L1 -5433 870 804 229 296 68 0 chrY 16069872 16069960 -35443624 + L2 LINE L2 2725 2818 -496 1964 119 0 64 chrY 16070654 16071013 -35442571 + AluY SINE Alu 1 311 0 369 200 95 0 chrY 16071657 16071752 -35441832 - L1MC4a LINE L1 -1893 5915 5812 561 183 32 24 chrY 16071820 16071946 -35441638 + FLAM_C SINE Alu 11 137 -6 786 224 78 15 chrY 16071946 16072151 -35441433 - L1MB7 LINE L1 -62 6122 5905 1825 154 0 30 chrY 16072625 16072924 -35440660 + AluSg SINE Alu 1 290 -20 34 0 0 0 chrY 16072963 16072997 -35440587 + AT_rich Low_complexity Low_complexity 1 34 0 2315 105 3 9 chrY 16073222 16073537 -35440047 + AluSp SINE Alu 1 313 0 24 0 0 0 chrY 16074022 16074046 -35439538 + AT_rich Low_complexity Low_complexity 1 24 0 1536 176 75 0 chrY 16074336 16074603 -35438981 - AluSx SINE Alu -21 291 5 1235 267 26 32 chrY 16074620 16075118 -35438466 - L1MB2 LINE L1 -3 6404 5910 712 253 34 37 chrY 16075149 16075446 -35438138 - L1MB2 LINE L1 -1332 5050 4755 701 292 39 64 chrY 16075455 16075859 -35437725 - L1MB2 LINE L1 -3265 3117 2704 222 105 0 0 chrY 16075859 16075897 -35437687 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 701 292 39 64 chrY 16075897 16076006 -35437578 - L1MB2 LINE L1 -3678 2704 2594 2028 134 3 0 chrY 16076006 16076296 -35437288 - AluY SINE Alu -20 291 1 701 292 39 64 chrY 16076296 16076594 -35436990 - L1MB2 LINE L1 -3788 2594 2326 243 0 0 0 chrY 16076672 16076699 -35436885 + (TG)n Simple_repeat Simple_repeat 2 28 0 1846 157 0 10 chrY 16076753 16077046 -35436538 - AluSg SINE Alu -20 290 1 966 314 20 5 chrY 16077257 16077769 -35435815 - L1MB2 LINE L1 -4160 2223 1304 296 240 144 50 chrY 16077747 16078160 -35435424 - L1MB2 LINE L1 -4806 1507 1087 * 1849 180 3 0 chrY 16078334 16078639 -35434945 - AluSp SINE Alu -7 306 1 2163 125 0 6 chrY 16079090 16079403 -35434181 - AluY SINE Alu 0 311 1 864 271 44 60 chrY 16079890 16080256 -35433328 + MLT1B LTR MaLR 25 384 -6 2059 130 10 0 chrY 16081129 16081422 -35432162 + AluY SINE Alu 3 298 -13 868 155 292 23 chrY 16082370 16082589 -35430995 + AluSg1 SINE Alu 6 283 -26 543 253 103 23 chrY 16082609 16082837 -35430747 + AluJb SINE Alu 125 366 0 1322 178 5 0 chrY 16082838 16083052 -35430532 + AluSc SINE Alu 52 266 -43 243 38 57 38 chrY 16083054 16083107 -35430477 + A-rich Low_complexity Low_complexity 2 55 0 1644 175 49 0 chrY 16083192 16083477 -35430107 - AluSg SINE Alu -11 299 1 1216 178 0 22 chrY 16083482 16083712 -35429872 - AluSg/x SINE Alu -5 307 83 1587 129 3 99 chrY 16083723 16084055 -35429529 - AluSg SINE Alu 0 310 11 392 132 5 0 chrY 16084224 16084294 -35429290 - AluJ/FLAM SINE Alu -240 62 5 906 216 106 38 chrY 16084371 16084635 -35428949 - AluJo SINE Alu -30 282 1 758 119 0 8 chrY 16084703 16084829 -35428755 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 788 259 7 29 chrY 16085302 16085576 -35428008 + L1PA15 LINE L1 5891 6158 -7 1649 146 36 7 chrY 16085778 16086052 -35427532 - AluSx SINE Alu -21 291 10 448 269 7 9 chrY 16086387 16086558 -35427026 - MER39B LTR ERV1 -20 623 462 624 219 0 7 chrY 16086560 16086697 -35426887 + MER39B LTR ERV1 276 411 -242 1699 148 7 0 chrY 16086913 16087184 -35426400 + AluSp SINE Alu 5 277 -36 24 0 0 0 chrY 16088587 16088611 -35424973 + AT_rich Low_complexity Low_complexity 1 24 0 552 195 0 0 chrY 16089107 16089261 -35424323 + CT-rich Low_complexity Low_complexity 2 155 0 508 200 11 0 chrY 16089289 16089464 -35424120 + CT-rich Low_complexity Low_complexity 2 178 0 1765 139 79 4 chrY 16090818 16091098 -35422486 - AluSg SINE Alu -9 301 1 886 236 130 8 chrY 16091666 16091920 -35421664 + AluJb SINE Alu 1 285 -17 32 26 0 0 chrY 16091998 16092037 -35421547 + AT_rich Low_complexity Low_complexity 1 39 0 522 219 16 8 chrY 16092054 16092182 -35421402 - AluJb SINE Alu -171 141 13 1807 186 0 7 chrY 16092867 16093168 -35420416 + AluSg SINE Alu 1 299 -11 2766 203 9 19 chrY 16093173 16093852 -35419732 + L1P LINE L1 1106 1777 -4369 928 185 8 24 chrY 16093852 16094883 -35418701 - ALR/Alpha Satellite centromeric 0 2435 1390 1501 197 39 11 chrY 16094883 16095167 -35418417 - AluSp SINE Alu -21 292 1 928 185 8 24 chrY 16095167 16095598 -35417986 - ALR/Alpha Satellite centromeric -1045 1390 954 1914 148 0 7 chrY 16095598 16095889 -35417695 - AluY SINE Alu -8 303 15 928 185 8 24 chrY 16095889 16096325 -35417259 - ALR/Alpha Satellite centromeric -1481 954 1 1057 183 8 8 chrY 16096336 16102964 -35410620 - ALR/Alpha Satellite centromeric -10 8752 1848 1506 184 7 4 chrY 16102964 16103241 -35410343 - AluSg1 SINE Alu -20 289 12 1057 183 8 8 chrY 16103241 16105089 -35408495 - ALR/Alpha Satellite centromeric -6914 1848 1 1028 123 0 0 chrY 16105093 16105239 -35408345 - AluY SINE Alu 0 311 166 921 171 16 1 chrY 16105239 16105987 -35407597 - ALR/Alpha Satellite centromeric 0 759 1 26010 122 38 11 chrY 16105987 16110388 -35403196 - L1P LINE L1 -1622 4524 1 965 177 4 1 chrY 16110389 16111493 -35402091 - ALR/Alpha Satellite centromeric 0 1107 1 5293 134 17 4 chrY 16111493 16112882 -35400702 - HERVK14C LTR ERVK -5928 1489 1 3964 123 19 0 chrY 16112882 16113458 -35400126 - LTR14C LTR ERVK 0 587 1 980 161 8 6 chrY 16113458 16114657 -35398927 - ALR/Alpha Satellite centromeric -8 1679 166 1994 145 0 7 chrY 16114657 16114967 -35398617 - AluY SINE Alu -3 308 1 980 161 8 6 chrY 16114967 16115134 -35398450 - ALR/Alpha Satellite centromeric -1521 166 1 1047 158 9 0 chrY 16115153 16116249 -35397335 - ALR/Alpha Satellite centromeric 0 1105 1 1123 168 8 7 chrY 16116260 16126185 -35387399 - ALR/Alpha Satellite centromeric -1 9932 1 2798 125 0 0 chrY 16126185 16126608 -35386976 + HERVK11 LTR ERVK 4179 4601 -3352 * 7442 100 6 0 chrY 16126606 16127730 -35385854 + HERVK11 LTR ERVK 5525 6707 -1246 180 190 69 52 chrY 16127730 16127788 -35385796 + L2 LINE L2 3150 3208 -64 6672 102 7 0 chrY 16127788 16128765 -35384819 + HERVK11 LTR ERVK 6970 7953 0 5751 148 23 33 chrY 16128765 16129843 -35383741 + MER11C LTR ERVK 1 1067 -4 934 181 7 5 chrY 16129857 16131208 -35382376 - ALR/Alpha Satellite centromeric -31 1353 1 204 40 0 0 chrY 16131241 16131266 -35382318 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2157 66 0 0 chrY 16131266 16131537 -35382047 - L1PA4 LINE L1 -18 6137 5867 10271 67 2 3 chrY 16131537 16133221 -35380363 - L1PA4 LINE L1 -517 5638 3955 1657 25 0 0 chrY 16133221 16133419 -35380165 - L1PA2 LINE L1 0 6155 5958 4315 25 0 0 chrY 16133419 16133945 -35379639 + L1PA2 LINE L1 5422 5947 -208 * 20162 82 9 1 chrY 16133942 16137869 -35375715 - L1PA4 LINE L1 -2182 3964 9 972 165 16 6 chrY 16137874 16140641 -35372943 - ALR/Alpha Satellite centromeric 0 2795 1 1040 167 13 5 chrY 16140655 16146479 -35367105 - ALR/Alpha Satellite centromeric 0 6287 383 207 0 0 0 chrY 16146479 16146502 -35367082 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1040 167 13 5 chrY 16146502 16146889 -35366695 - ALR/Alpha Satellite centromeric -5904 383 1 2057 124 27 10 chrY 16147050 16147348 -35366236 + AluY SINE Alu 1 303 -8 22 0 0 0 chrY 16147603 16147625 -35365959 + AT_rich Low_complexity Low_complexity 1 22 0 40268 58 2 1 chrY 16150024 16156173 -35357411 + L1PA3 LINE L1 2 6155 0 1162 249 90 4 chrY 16156473 16156750 -35356834 + AluSx SINE Alu 1 301 -11 35 24 0 0 chrY 16156897 16156939 -35356645 + AT_rich Low_complexity Low_complexity 1 42 0 1752 192 0 7 chrY 16157081 16157246 -35356338 - AluSq SINE Alu -23 290 126 207 0 0 0 chrY 16157246 16157269 -35356315 + (TG)n Simple_repeat Simple_repeat 2 24 0 1752 192 0 7 chrY 16157269 16157395 -35356189 - AluSq SINE Alu -187 126 1 437 272 208 0 chrY 16157705 16157830 -35355754 + AluSq SINE Alu 137 287 -26 2064 284 19 12 chrY 16158024 16158615 -35354969 - MER52A LTR ERV1 0 1755 1161 397 203 0 0 chrY 16158616 16158695 -35354889 + HERVL LTR ERVL 710 788 -4866 1860 108 101 21 chrY 16159088 16159374 -35354210 - AluY SINE Alu -2 309 1 317 323 60 65 chrY 16159705 16159906 -35353678 + L2 LINE L2 2763 2962 -352 21 36 0 0 chrY 16160718 16160746 -35352838 + AT_rich Low_complexity Low_complexity 1 28 0 430 282 145 55 chrY 16160969 16161444 -35352140 + L1M4c LINE L1 1983 2500 -3884 839 126 8 0 chrY 16161590 16161709 -35351875 + AluY SINE Alu 1 120 -191 189 0 0 0 chrY 16161709 16161730 -35351854 + (CA)n Simple_repeat Simple_repeat 2 22 0 1659 171 4 0 chrY 16161742 16162022 -35351562 + AluSc SINE Alu 21 301 0 1400 259 96 9 chrY 16162022 16162964 -35350620 + L1M4 LINE L1 1088 2211 -4173 1661 326 45 18 chrY 16164948 16165614 -35347970 - MER52A LTR ERV1 -149 1606 923 406 362 53 4 chrY 16165581 16165763 -35347821 - MER52A LTR ERV1 -658 1097 925 * 1517 208 11 0 chrY 16165763 16166042 -35347542 + AluSp SINE Alu 2 283 -30 386 68 0 17 chrY 16166045 16166104 -35347480 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 406 362 53 4 chrY 16166104 16166182 -35347402 - MER52A LTR ERV1 -831 924 820 349 207 16 36 chrY 16166192 16166508 -35347076 + (CCCTAA)n Simple_repeat Simple_repeat 1 309 0 214 193 12 24 chrY 16166617 16166700 -35346884 + (CCCTAA)n Simple_repeat Simple_repeat 6 87 0 182 192 20 20 chrY 16166788 16166887 -35346697 + (CCCTAA)n Simple_repeat Simple_repeat 4 102 0 198 227 5 38 chrY 16167002 16167187 -35346397 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 308 200 32 8 chrY 16167213 16167338 -35346246 + (CCCTAA)n Simple_repeat Simple_repeat 3 130 0 597 295 73 23 chrY 16167727 16168246 -35345338 + L1M4 LINE L1 4091 4635 -1747 22 0 0 0 chrY 16168831 16168853 -35344731 + AT_rich Low_complexity Low_complexity 1 22 0 1023 231 97 7 chrY 16169162 16169431 -35344153 + AluJb SINE Alu 19 311 -1 21 36 0 0 chrY 16169760 16169788 -35343796 + AT_rich Low_complexity Low_complexity 1 28 0 2161 175 34 79 chrY 16169820 16170437 -35343147 + MER4B LTR ERV1 1 754 -25 392 284 51 47 chrY 16171494 16171709 -35341875 + L1ME2 LINE L1 4296 4511 -1635 989 207 103 16 chrY 16171711 16171953 -35341631 + AluJb SINE Alu 3 265 -47 270 0 0 0 chrY 16171965 16171995 -35341589 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 291 272 88 22 chrY 16172090 16172362 -35341222 + L1ME2 LINE L1 4670 4959 -1187 1093 253 0 4 chrY 16172553 16172810 -35340774 + AluSx SINE Alu 36 291 -21 321 251 107 2 chrY 16172826 16173001 -35340583 + L1ME2 LINE L1 5188 5381 -765 5246 138 36 7 chrY 16173519 16174815 -35338769 - L1PA8 LINE L1 -7 6480 5141 15974 185 26 42 chrY 16174818 16176349 -35337235 - L1PA8 LINE L1 -1582 4879 3326 1216 240 6 41 chrY 16176349 16176666 -35336918 - AluSx SINE Alu -6 306 1 15974 185 26 42 chrY 16176666 16177759 -35335825 - L1PA8 LINE L1 -3135 3326 2218 1940 131 10 29 chrY 16177759 16178072 -35335512 - AluY SINE Alu -2 309 3 15974 185 26 42 chrY 16178072 16180362 -35333222 - L1PA8 LINE L1 -4243 2218 6 1572 174 75 6 chrY 16180723 16181056 -35332528 + LTR22B LTR ERVK 1 356 -136 465 165 0 12 chrY 16181062 16181147 -35332437 + AluY SINE Alu 210 293 -18 320 235 29 10 chrY 16181234 16181336 -35332248 - L1MB3 LINE L1 -10 6173 6070 237 226 0 0 chrY 16181332 16181394 -35332190 - L1MB3 LINE L1 -612 5559 5498 * 225 219 16 47 chrY 16181425 16181489 -35332095 - MER50 LTR ERV1 -663 71 10 514 269 56 53 chrY 16182276 16182670 -35330914 + L1ME2 LINE L1 5583 5980 -184 252 0 0 0 chrY 16183528 16183556 -35330028 + (A)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chrY 16184509 16184540 -35329044 + AT_rich Low_complexity Low_complexity 1 31 0 293 291 153 41 chrY 16185418 16185614 -35327970 - MIR SINE MIR -1 261 44 4428 86 0 0 chrY 16186488 16187073 -35326511 + LTR14C LTR ERVK 3 587 0 410 115 0 0 chrY 16187319 16187380 -35326204 + Alu SINE Alu 235 295 -15 31903 135 13 16 chrY 16187410 16193583 -35320001 + L1PA6 LINE L1 2 6144 -10 24 0 0 0 chrY 16193584 16193608 -35319976 + AT_rich Low_complexity Low_complexity 1 24 0 239 276 38 19 chrY 16193615 16193720 -35319864 - L1MA9 LINE L1 -38 6274 6168 880 248 33 5 chrY 16193720 16193930 -35319654 + MSTB1 LTR MaLR 1 216 -216 3169 243 91 18 chrY 16193934 16194527 -35319057 - L1MB1 LINE L1 -262 6109 5561 3843 114 12 2 chrY 16194527 16195108 -35318476 - LTR14C LTR ERVK 0 587 1 3169 243 91 18 chrY 16195108 16196160 -35317424 - L1MB1 LINE L1 -810 5561 4330 2391 281 43 30 chrY 16196136 16196484 -35317100 - L1MB1 LINE L1 -2945 3383 3041 * 2173 106 0 0 chrY 16196484 16196776 -35316808 + AluY SINE Alu 6 297 -14 2391 281 43 30 chrY 16196776 16197825 -35315759 - L1MB1 LINE L1 -3287 3041 1963 310 234 56 9 chrY 16197829 16197936 -35315648 - L1MB1 LINE L1 -4767 1561 1450 261 0 0 0 chrY 16197936 16197965 -35315619 + (T)n Simple_repeat Simple_repeat 1 29 0 3785 258 31 43 chrY 16199871 16200161 -35313423 - L1MB1 LINE L1 -4065 1263 971 1624 206 0 3 chrY 16200161 16200493 -35313091 - AluSx SINE Alu 0 312 4 3785 258 31 43 chrY 16200493 16201620 -35311964 - L1MB1 LINE L1 -4357 971 56 266 261 97 15 chrY 16201794 16201928 -35311656 - L1M4 LINE L1 -3149 3495 3351 1430 198 34 0 chrY 16201962 16202230 -35311354 + AluSx SINE Alu 1 277 -35 186 171 0 0 chrY 16202253 16202294 -35311290 + A-rich Low_complexity Low_complexity 1 41 0 874 285 42 47 chrY 16202300 16202703 -35310881 - L1M4 LINE L1 -3330 3314 2914 428 302 81 16 chrY 16202792 16203173 -35310411 - L1M4 LINE L1 -3951 2695 2290 845 246 131 11 chrY 16203234 16203494 -35310090 - AluJo SINE Alu -12 300 10 1558 269 96 50 chrY 16203507 16204742 -35308842 - L1M4 LINE L1 -4488 2158 858 229 51 51 0 chrY 16204770 16204809 -35308775 + A-rich Low_complexity Low_complexity 5 45 0 694 256 54 10 chrY 16204953 16205156 -35308428 + AluJb SINE Alu 3 214 -98 429 252 9 9 chrY 16205157 16205272 -35308312 + AluJb SINE Alu 168 282 -30 454 323 131 34 chrY 16205308 16205782 -35307802 - L1M4 LINE L1 -5939 603 84 1872 157 0 0 chrY 16205893 16206179 -35307405 - AluSx SINE Alu -24 288 3 29 104 0 0 chrY 16206787 16206893 -35306691 + AT_rich Low_complexity Low_complexity 1 106 0 22 0 0 0 chrY 16207115 16207137 -35306447 + AT_rich Low_complexity Low_complexity 1 22 0 497 281 118 0 chrY 16207802 16207955 -35305629 + FAM SINE Alu 1 171 -4 222 236 0 0 chrY 16207956 16208011 -35305573 + GA-rich Low_complexity Low_complexity 4 58 0 200 356 174 9 chrY 16208036 16208370 -35305214 - L2 LINE L2 -1191 2123 1735 1186 205 17 17 chrY 16208426 16208665 -35304919 + AluSx SINE Alu 5 243 -69 963 199 40 87 chrY 16209148 16209323 -35304261 - L1MA7 LINE L1 0 6291 6139 1585 196 0 0 chrY 16209323 16209608 -35303976 - AluSq SINE Alu -25 288 4 963 199 40 87 chrY 16209608 16209796 -35303788 - L1MA7 LINE L1 -152 6139 5944 567 267 7 7 chrY 16209802 16209948 -35303636 - FRAM SINE Alu -30 146 1 1662 183 33 19 chrY 16209949 16210315 -35303269 - L1MA7 LINE L1 -325 5966 5596 295 206 0 65 chrY 16210340 16210432 -35303152 + L1 LINE L1 5097 5182 -964 243 375 23 8 chrY 16212022 16212150 -35301434 - L2 LINE L2 -721 2593 2464 526 292 168 0 chrY 16212640 16212825 -35300759 + AluSp SINE Alu 1 216 -97 741 280 61 31 chrY 16213213 16213752 -35299832 + L1M3e LINE L1 1967 2770 -4726 1318 211 3 61 chrY 16213752 16214064 -35299520 + AluSq SINE Alu 1 294 -19 741 280 61 31 chrY 16214064 16214277 -35299307 + L1M3e LINE L1 2770 2975 -4521 1334 270 113 7 chrY 16214314 16214915 -35298669 + L1M3e LINE L1 3894 4558 -3007 4690 224 63 46 chrY 16214975 16216508 -35297076 + L1M3e LINE L1 4867 6425 -1140 437 359 0 0 chrY 16216508 16216653 -35296931 + FRAM SINE Alu 1 145 -31 647 243 20 48 chrY 16216653 16217007 -35296577 + L1M3e LINE L1 6397 6740 -825 204 40 0 0 chrY 16217052 16217077 -35296507 + (TG)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chrY 16217090 16217114 -35296470 + (CA)n Simple_repeat Simple_repeat 2 25 0 1196 202 14 0 chrY 16217151 16217374 -35296210 - AluSx SINE Alu -86 226 1 1610 171 0 0 chrY 16217439 16217703 -35295881 + AluSg SINE Alu 2 265 -45 22 35 0 0 chrY 16218124 16218153 -35295431 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chrY 16220806 16220842 -35292742 + AT_rich Low_complexity Low_complexity 1 36 0 1098 246 52 7 chrY 16220854 16221143 -35292441 - AluJo SINE Alu 0 302 1 847 296 98 22 chrY 16221193 16221652 -35291932 + L2 LINE L2 2163 2656 -658 634 267 17 0 chrY 16221685 16221861 -35291723 - L1MB7 LINE L1 -21 6163 5985 845 183 33 70 chrY 16222208 16222421 -35291163 - AluSg/x SINE Alu -37 273 69 2530 58 3 0 chrY 16222658 16222968 -35290616 - AluY SINE Alu 0 311 1 291 106 99 0 chrY 16224000 16224151 -35289433 + (TA)n Simple_repeat Simple_repeat 2 167 0 386 137 46 30 chrY 16224155 16224286 -35289298 + (TTATA)n Simple_repeat Simple_repeat 1 133 0 331 98 104 0 chrY 16224291 16224454 -35289130 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 130 70 9 chrY 16224466 16224581 -35289003 + (TA)n Simple_repeat Simple_repeat 1 122 0 27 0 0 0 chrY 16225107 16225134 -35288450 + AT_rich Low_complexity Low_complexity 1 27 0 180 276 17 52 chrY 16225917 16225975 -35287609 - MIR SINE MIR -64 144 89 1210 244 21 37 chrY 16226570 16227005 -35286579 + L1MA4 LINE L1 5862 6289 -11 1345 303 79 78 chrY 16227250 16228416 -35285168 + MER21-int LTR ERV1 2014 3180 -1011 26 30 0 0 chrY 16228756 16228789 -35284795 + AT_rich Low_complexity Low_complexity 1 33 0 1348 209 46 7 chrY 16229048 16229331 -35284253 + AluSp SINE Alu 1 294 -9 946 106 17 22 chrY 16229334 16229513 -35284071 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 25 0 0 0 chrY 16229957 16229982 -35283602 + AT_rich Low_complexity Low_complexity 1 25 0 960 170 0 0 chrY 16230666 16230831 -35282753 - U1 snRNA snRNA 0 165 1 474 267 6 56 chrY 16231505 16231666 -35281918 - FRAM SINE Alu -20 156 4 1225 168 10 0 chrY 16233140 16233342 -35280242 + AluSg/x SINE Alu 77 280 -29 353 322 54 50 chrY 16234253 16234551 -35279033 + MER46C DNA MER2_type 1 299 -39 324 267 13 0 chrY 16238179 16238254 -35275330 - AluS SINE Alu -225 78 3 1637 192 3 7 chrY 16238848 16239150 -35274434 + AluSx SINE Alu 12 312 0 587 267 58 24 chrY 16240535 16240959 -35272625 + MLT1C LTR MaLR 2 460 -7 764 198 34 113 chrY 16243127 16243365 -35270219 + AluJo SINE Alu 4 222 -90 319 54 0 36 chrY 16243380 16243436 -35270148 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 209 307 83 20 chrY 16243596 16243701 -35269883 + MIR SINE MIR 18 130 -78 227 281 0 31 chrY 16243733 16243797 -35269787 + L2 LINE L2 3251 3312 -1 324 289 78 0 chrY 16243824 16243966 -35269618 + MER58B DNA MER1_type 189 341 0 189 107 36 18 chrY 16244232 16244288 -35269296 + (TG)n Simple_repeat Simple_repeat 2 58 0 402 222 234 23 chrY 16244696 16244867 -35268717 + MER3 DNA MER1_type 3 209 0 228 192 19 0 chrY 16244825 16244877 -35268707 - MER3 DNA MER1_type -119 90 38 * 1213 205 31 0 chrY 16244889 16245113 -35268471 - AluSx SINE Alu -66 246 16 232 146 49 0 chrY 16245138 16245179 -35268405 - Alu SINE Alu -259 43 1 1236 263 54 23 chrY 16245514 16245955 -35267629 + MLT1D LTR MaLR 28 482 -23 9647 52 14 2 chrY 16245983 16248001 -35265583 - L1PA4 LINE L1 0 6155 4128 10832 71 1 6 chrY 16248020 16249513 -35264071 - L1PA4 LINE L1 -4648 1498 14 207 0 0 0 chrY 16249935 16249958 -35263626 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 842 232 48 0 chrY 16250285 16250492 -35263092 + MER20 DNA MER1_type 3 219 0 723 196 0 0 chrY 16252627 16252785 -35260799 + CT-rich Low_complexity Low_complexity 4 161 0 1073 209 14 0 chrY 16253600 16253815 -35259769 - L1MC1 LINE L1 -8 6325 6108 1727 175 18 7 chrY 16253907 16254192 -35259392 - AluSx SINE Alu -22 290 3 356 331 76 0 chrY 16254291 16254448 -35259136 - FAM SINE Alu -6 169 1 353 272 24 0 chrY 16254456 16254581 -35259003 - FLAM_C SINE Alu 0 133 6 192 77 0 0 chrY 16256105 16256131 -35257453 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 249 139 0 0 chrY 16256210 16256253 -35257331 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 593 221 48 28 chrY 16256412 16256534 -35257050 + AluJo SINE Alu 3 130 -182 288 53 0 0 chrY 16256534 16256572 -35257012 + (TAA)n Simple_repeat Simple_repeat 2 39 0 593 221 48 28 chrY 16256572 16256594 -35256990 + AluJo SINE Alu 130 150 -162 305 215 82 138 chrY 16256616 16256811 -35256773 - L1MC4 LINE L1 -17 8025 7842 412 326 96 57 chrY 16258873 16259174 -35254410 + L2 LINE L2 2941 3253 -19 1198 279 25 0 chrY 16259402 16259685 -35253899 + AluJb SINE Alu 1 290 -12 1670 192 3 7 chrY 16259848 16260145 -35253439 - AluSq SINE Alu -17 296 1 1763 176 3 19 chrY 16260265 16260572 -35253012 - AluSg SINE Alu -8 302 1 232 335 177 6 chrY 16261074 16261238 -35252346 - L3 LINE CR1 -1195 382 191 280 125 0 0 chrY 16261845 16261893 -35251691 - FLAM_A SINE Alu -4 129 82 22 35 0 0 chrY 16264163 16264192 -35249392 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrY 16264220 16264244 -35249340 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chrY 16264451 16264479 -35249105 + AT_rich Low_complexity Low_complexity 1 28 0 437 180 0 20 chrY 16264617 16264717 -35248867 + CT-rich Low_complexity Low_complexity 1 98 0 683 191 17 6 chrY 16264737 16264915 -35248669 + CT-rich Low_complexity Low_complexity 1 180 0 1102 75 19 0 chrY 16264942 16265103 -35248481 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 1128 205 0 68 chrY 16265127 16265390 -35248194 - AluJo SINE Alu -67 245 1 753 259 169 9 chrY 16265393 16265664 -35247920 + LTR52 LTR ERVL 17 358 -63 258 105 0 0 chrY 16265664 16265702 -35247882 + (TG)n Simple_repeat Simple_repeat 2 39 0 753 259 169 9 chrY 16265702 16265778 -35247806 + LTR52 LTR ERVL 358 420 -1 7392 41 0 0 chrY 16265793 16267334 -35246250 - L1PA3 LINE L1 0 6155 4614 9486 64 6 1 chrY 16267335 16268638 -35244946 + L1P LINE L1 3355 4664 -1482 25 31 0 0 chrY 16269251 16269283 -35244301 + AT_rich Low_complexity Low_complexity 1 32 0 1670 189 7 7 chrY 16270160 16270469 -35243115 - AluSx SINE Alu 0 309 1 1963 156 3 0 chrY 16270529 16270831 -35242753 - AluSc SINE Alu -2 307 5 6090 66 2 2 chrY 16272171 16278263 -35235321 - L1PA4 LINE L1 -3 6152 1 840 166 10 22 chrY 16278550 16278967 -35234617 + GA-rich Low_complexity Low_complexity 1 412 0 1360 204 0 4 chrY 16279142 16279392 -35234192 - AluJb SINE Alu -39 273 25 437 288 0 0 chrY 16279628 16279778 -35233806 - FRAM SINE Alu 0 180 31 219 303 18 28 chrY 16279825 16279934 -35233650 + MIR3 SINE MIR 98 205 -3 191 250 94 16 chrY 16282004 16282068 -35231516 - MIR SINE MIR -157 105 37 420 176 14 0 chrY 16282107 16282181 -35231403 + AluJb SINE Alu 199 273 -39 262 0 0 0 chrY 16282181 16282211 -35231373 - THE1A LTR MaLR -325 30 1 1003 181 68 17 chrY 16282211 16282448 -35231136 + MLT1B LTR MaLR 138 386 -4 878 212 10 20 chrY 16282729 16282932 -35230652 + MLT1E2 LTR MaLR 1 201 -425 552 220 6 11 chrY 16283059 16283236 -35230348 + CT-rich Low_complexity Low_complexity 2 177 0 5171 125 8 16 chrY 16283240 16284117 -35229467 - L1PA8A LINE L1 0 6131 5262 6069 201 17 37 chrY 16284117 16286467 -35227117 - L1P3 LINE L1 -4113 2348 3 1507 181 16 108 chrY 16286467 16286731 -35226853 + Tigger7 DNA MER2_type 2091 2301 -186 2129 159 20 6 chrY 16286731 16287084 -35226500 - THE1B LTR MaLR -2 362 5 1507 181 16 108 chrY 16287084 16287256 -35226328 + Tigger7 DNA MER2_type 2301 2487 0 563 248 22 65 chrY 16287333 16287597 -35225987 + MLT1E LTR MaLR 296 506 -87 354 167 15 0 chrY 16287640 16287706 -35225878 + LTR29 LTR ERV1 321 387 -235 1266 237 22 22 chrY 16487706 16488069 -35025515 - LTR19-int LTR ERV1 -6565 431 69 1162 321 33 29 chrY 16488172 16488804 -35024780 - LTR19-int LTR ERV1 -6586 2333 1699 327 255 61 122 chrY 16489255 16489467 -35024117 - LTR25 LTR ERV1 -160 634 372 1250 50 6 16 chrY 16489467 16489649 -35023935 + (GAA)n Simple_repeat Simple_repeat 1 180 0 327 255 61 122 chrY 16489649 16489747 -35023837 - LTR25 LTR ERV1 -422 372 270 2810 319 41 25 chrY 16489972 16490325 -35023259 + HUERS-P3 LTR ERV1 1704 2050 -6869 2580 7 0 0 chrY 16490325 16490638 -35022946 - AluY SINE Alu 0 313 1 2810 319 41 25 chrY 16490638 16491611 -35021973 + HUERS-P3 LTR ERV1 2050 3053 -5866 1076 276 92 12 chrY 16491629 16492132 -35021452 - LTR25 LTR ERV1 -2 792 250 322 222 0 0 chrY 16492159 16492231 -35021353 - LTR25 LTR ERV1 -501 293 222 629 304 37 18 chrY 16492356 16492617 -35020967 - LTR19-int LTR ERV1 -24 8895 4918 1648 279 24 10 chrY 16492620 16493197 -35020387 - LTR19-int LTR ERV1 -1224 3993 3409 3398 192 26 44 chrY 16493202 16494202 -35019382 + MER11C LTR ERVK 1 1071 0 263 238 38 12 chrY 16494202 16494282 -35019302 - LTR19-int LTR ERV1 -1402 4184 4103 2983 291 8 17 chrY 16494287 16495221 -35018363 - LTR19-int LTR ERV1 -5305 3614 2690 2395 234 29 94 chrY 16495222 16496071 -35017513 + LTR25 LTR ERV1 1 794 0 4902 290 52 42 chrY 16496218 16499116 -35014468 + LTR25-int LTR ERV1 274 3125 -4286 279 0 0 0 chrY 16499116 16499147 -35014437 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4902 290 52 42 chrY 16499147 16499214 -35014370 + LTR25-int LTR ERV1 3125 3190 -4221 1931 223 18 115 chrY 16499214 16499891 -35013693 + LTR25 LTR ERV1 1 611 -183 2349 14 0 0 chrY 16499891 16500171 -35013413 - L1P LINE L1 -1143 5003 4724 * 7676 11 0 0 chrY 16500166 16501270 -35012314 + L1HS LINE L1 5052 6155 0 507 257 9 84 chrY 16501300 16501514 -35012070 + LTR25 LTR ERV1 597 794 0 3800 252 36 28 chrY 16501602 16502745 -35010839 + LTR25-int LTR ERV1 2907 4066 -2930 1643 189 34 3 chrY 16502745 16503042 -35010542 - AluSc SINE Alu -2 307 2 3800 252 36 28 chrY 16503042 16503312 -35010272 + LTR25-int LTR ERV1 4066 4332 -2664 5083 259 43 27 chrY 16503325 16505991 -35007593 + LTR25-int LTR ERV1 1750 6996 0 2152 250 48 76 chrY 16505993 16506306 -35007278 + LTR25 LTR ERV1 3 323 -471 183 42 0 0 chrY 16506306 16506330 -35007254 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2152 250 48 76 chrY 16506330 16506831 -35006753 + LTR25 LTR ERV1 323 794 0 5529 280 43 48 chrY 16506851 16509552 -35004032 - LTR25-int LTR ERV1 -4226 2770 100 1404 189 21 24 chrY 16509669 16509960 -35003624 - AluY SINE Alu -21 290 1 712 255 100 93 chrY 16510028 16510566 -35003018 - LTR25 LTR ERV1 0 794 253 22 0 0 0 chrY 16510630 16510652 -35002932 + AT_rich Low_complexity Low_complexity 1 22 0 1592 272 19 55 chrY 16510775 16511504 -35002080 + LTR25-int LTR ERV1 1846 2548 -4448 1260 360 6 0 chrY 16511506 16511981 -35001603 + MER52A LTR ERV1 1278 1755 0 550 267 8 0 chrY 16511990 16512121 -35001463 + MER21B LTR ERV1 247 378 -485 1137 224 67 70 chrY 16515003 16515259 -34998325 - L1M4c LINE L1 -4188 2196 1941 2119 88 0 11 chrY 16515259 16515586 -34997998 - AluY SINE Alu 0 324 1 1137 224 67 70 chrY 16515586 16516219 -34997365 - L1M4c LINE L1 -4443 1941 1214 1187 265 42 0 chrY 16516385 16516743 -34996841 - LTR25 LTR ERV1 0 794 422 325 153 34 0 chrY 16516739 16516798 -34996786 - LTR25 LTR ERV1 -253 541 481 * 1861 145 3 27 chrY 16518075 16518401 -34995183 - AluY SINE Alu 0 319 1 1141 272 110 21 chrY 16518829 16519994 -34993590 - L1M4c LINE L1 -4204 2180 812 22 0 0 0 chrY 16520100 16520122 -34993462 + AT_rich Low_complexity Low_complexity 1 22 0 1247 306 99 27 chrY 16520189 16520443 -34993141 - L1M4c LINE L1 -5536 848 614 321 26 0 0 chrY 16520443 16520481 -34993103 + (TG)n Simple_repeat Simple_repeat 1 38 0 1247 306 99 27 chrY 16520481 16520997 -34992587 - L1M4c LINE L1 -5770 614 23 345 350 70 11 chrY 16522225 16522411 -34991173 - L2 LINE L2 -352 2962 2766 268 228 0 0 chrY 16522457 16522514 -34991070 + MER20 DNA MER1_type 90 146 -73 180 152 0 0 chrY 16523847 16523880 -34989704 + (TTA)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chrY 16524155 16524178 -34989406 + (T)n Simple_repeat Simple_repeat 1 23 0 34077 84 7 6 chrY 16524362 16529317 -34984267 + L1P LINE L1 44 5005 -1141 * 39219 62 2 15 chrY 16529316 16535549 -34978035 + L1PA4 LINE L1 3 6153 -2 238 250 0 0 chrY 16535602 16535650 -34977934 + (TG)n Simple_repeat Simple_repeat 1 48 0 1424 182 89 29 chrY 16535650 16536030 -34977554 - MLT2A1 LTR ERVL -41 403 1 10513 156 6 20 chrY 16536030 16537902 -34975682 - HERVL-A1 LTR ERVL 0 5654 3810 2112 172 21 3 chrY 16537896 16538285 -34975299 - HERVL-A1 LTR ERVL -2058 3596 3201 * 826 188 0 0 chrY 16538273 16538427 -34975157 - HERVL LTR ERVL -998 4656 4503 * 8771 196 26 5 chrY 16538425 16540210 -34973374 - HERVL LTR ERVL -2454 3200 1378 765 189 7 7 chrY 16540211 16540364 -34973220 - MLT2A1 LTR ERVL -291 153 1 * 889 271 47 103 chrY 16540364 16540887 -34972697 + MER52A LTR ERV1 645 1114 -164 3069 276 43 1 chrY 16540855 16541662 -34971922 + MER52A LTR ERV1 915 1755 0 297 250 10 21 chrY 16541957 16542053 -34971531 - MER20 DNA MER1_type -24 195 101 180 0 0 0 chrY 16542066 16542086 -34971498 + (T)n Simple_repeat Simple_repeat 1 20 0 1013 210 23 37 chrY 16542167 16542467 -34971117 + L1PA10 LINE L1 5483 5778 -390 686 207 0 0 chrY 16542483 16542618 -34970966 + L1PA10 LINE L1 6022 6156 -12 185 0 0 39 chrY 16542619 16542645 -34970939 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 1107 239 98 11 chrY 16542794 16543070 -34970514 - AluSx SINE Alu -2 300 1 279 0 0 0 chrY 16544377 16544408 -34969176 + (TA)n Simple_repeat Simple_repeat 1 31 0 222 37 0 0 chrY 16545324 16545351 -34968233 + (T)n Simple_repeat Simple_repeat 1 27 0 3000 200 2 2 chrY 16545549 16546105 -34967479 + THE1B-int LTR MaLR 1025 1580 0 1068 216 120 30 chrY 16546105 16546439 -34967145 + THE1B LTR MaLR 1 364 0 822 274 17 47 chrY 16546672 16546846 -34966738 - AluJo SINE Alu -17 295 132 315 0 0 0 chrY 16546846 16546881 -34966703 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 822 274 17 47 chrY 16546881 16547005 -34966579 - AluJo SINE Alu -180 132 6 22 0 0 0 chrY 16547711 16547733 -34965851 + AT_rich Low_complexity Low_complexity 1 22 0 586 0 27 0 chrY 16548290 16548364 -34965220 + (TC)n Simple_repeat Simple_repeat 1 76 0 950 231 0 13 chrY 16548377 16548602 -34964982 - AluSq SINE Alu -11 302 81 1988 122 3 34 chrY 16548632 16548952 -34964632 + AluY SINE Alu 1 310 -1 219 36 0 0 chrY 16549847 16549875 -34963709 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 243 111 0 0 chrY 16549892 16549928 -34963656 + Charlie3 DNA MER1_type 2659 2694 -16 671 313 104 20 chrY 16550617 16550866 -34962718 - AluJb SINE Alu -41 271 2 663 165 13 6 chrY 16550879 16551037 -34962547 + (TA)n Simple_repeat Simple_repeat 1 159 0 554 189 0 0 chrY 16551266 16551361 -34962223 - AluJb SINE Alu -131 181 87 26 30 0 0 chrY 16553486 16553519 -34960065 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chrY 16553750 16553783 -34959801 + AT_rich Low_complexity Low_complexity 1 33 0 390 91 0 0 chrY 16554759 16554814 -34958770 + (GAA)n Simple_repeat Simple_repeat 3 57 0 28 0 0 0 chrY 16554988 16555016 -34958568 + AT_rich Low_complexity Low_complexity 1 28 0 2192 89 3 3 chrY 16555293 16555596 -34957988 - AluY SINE Alu -8 303 1 23 0 0 0 chrY 16555972 16555995 -34957589 + AT_rich Low_complexity Low_complexity 1 23 0 1121 251 94 4 chrY 16556851 16557118 -34956466 + AluSx SINE Alu 11 301 -11 258 164 30 60 chrY 16557280 16557347 -34956237 - L1PA10 LINE L1 -1 6167 6103 1691 138 20 61 chrY 16557408 16557728 -34955856 - AluSq SINE Alu 0 308 1 339 261 130 17 chrY 16557798 16557913 -34955671 + MER20 DNA MER1_type 25 152 -67 298 0 48 0 chrY 16557926 16557968 -34955616 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 2309 279 12 3 chrY 16558307 16558902 -34954682 - MER52A LTR ERV1 0 1755 1156 17360 179 11 3 chrY 16558902 16563267 -34950317 + HERVL-A1 LTR ERVL 714 5225 -429 801 122 0 0 chrY 16563269 16563416 -34950168 + (CAAG)n Simple_repeat Simple_repeat 2 148 0 * 815 157 0 6 chrY 16563407 16563573 -34950011 + GA-rich Low_complexity Low_complexity 2 166 0 2025 169 32 0 chrY 16563588 16563995 -34949589 + HERVL-A1 LTR ERVL 5235 5654 0 808 209 59 14 chrY 16563995 16564215 -34949369 + MLT2A1 LTR ERVL 1 230 -214 368 353 59 5 chrY 16565266 16565453 -34948131 + L2 LINE L2 2766 2962 -352 363 288 109 62 chrY 16566612 16566998 -34946586 + L1M4c LINE L1 2091 2494 -3890 1214 292 86 37 chrY 16567055 16567814 -34945770 + L1M4c LINE L1 49 850 -5534 2485 43 23 3 chrY 16567814 16568119 -34945465 + AluY SINE Alu 1 311 0 1214 292 86 37 chrY 16568119 16568147 -34945437 + L1M4c LINE L1 850 875 -5509 396 0 0 0 chrY 16568155 16568199 -34945385 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 312 302 55 64 chrY 16568199 16568434 -34945150 + L1M4c LINE L1 823 1055 -5329 243 0 0 0 chrY 16568449 16568476 -34945108 + (TC)n Simple_repeat Simple_repeat 2 28 0 234 136 0 0 chrY 16568477 16568521 -34945063 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 459 150 43 0 chrY 16568550 16568690 -34944894 + (TA)n Simple_repeat Simple_repeat 1 146 0 1309 259 155 14 chrY 16568690 16568733 -34944851 + L1M4c LINE L1 1051 1087 -5297 1640 197 7 3 chrY 16568733 16569032 -34944552 + AluSc SINE Alu 1 300 -9 1309 259 155 14 chrY 16569032 16569128 -34944456 + L1M4c LINE L1 1087 1168 -5216 213 39 0 0 chrY 16569128 16569154 -34944430 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1309 259 155 14 chrY 16569154 16569703 -34943881 + L1M4c LINE L1 1168 1837 -4547 1938 231 45 16 chrY 16569745 16570351 -34943233 + L1MB5 LINE L1 5542 6164 -10 947 208 23 9 chrY 16570522 16570743 -34942841 - MER50 LTR ERV1 0 734 511 554 235 17 17 chrY 16570751 16570930 -34942654 - L1M4 LINE L1 -901 5245 5067 527 160 73 132 chrY 16570903 16571122 -34942462 + L1M4 LINE L1 5354 5559 -625 * 314 212 61 0 chrY 16571116 16571215 -34942369 + L1MB3 LINE L1 6068 6172 -11 * 1276 243 67 49 chrY 16571478 16572046 -34941538 - L1MC3 LINE L1 -1822 5963 5386 3539 39 28 0 chrY 16572172 16572633 -34940951 + L1P LINE L1 4555 5028 -1118 1450 201 7 13 chrY 16572761 16573103 -34940481 - AluSx SINE Alu 0 340 1 309 244 56 22 chrY 16573456 16573546 -34940038 - L1MC3 LINE L1 -2607 5388 5296 241 45 23 23 chrY 16573641 16573685 -34939899 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 820 217 0 53 chrY 16573690 16573879 -34939705 - AluSg/x SINE Alu -24 288 110 2334 159 7 16 chrY 16573879 16574312 -34939272 - LTR3 LTR ERVK 0 429 1 10065 220 31 27 chrY 16574315 16578470 -34935114 - HERVK3 LTR ERVK -2 7241 2914 189 107 0 0 chrY 16578541 16578569 -34935015 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 233 257 18 37 chrY 16578575 16578684 -34934900 - L1MC4 LINE L1 -1339 6703 6597 232 267 35 0 chrY 16578725 16578811 -34934773 - L1MC4 LINE L1 -1340 6702 6614 245 253 0 10 chrY 16578846 16578945 -34934639 + (TA)n Simple_repeat Simple_repeat 1 98 0 33064 75 18 1 chrY 16578946 16583615 -34929969 + L1PA4 LINE L1 7 4754 -1392 6867 64 1 2 chrY 16583616 16584974 -34928610 + L1PA4 LINE L1 4799 6155 0 3180 216 67 36 chrY 16584980 16585973 -34927611 - L1P LINE L1 -3857 2289 1267 559 164 156 0 chrY 16585990 16586112 -34927472 - AluSc SINE Alu -25 284 144 1856 182 0 0 chrY 16586543 16586840 -34926744 + AluSg SINE Alu 1 297 -13 1656 185 3 7 chrY 16588547 16588844 -34924740 - AluY SINE Alu -13 298 3 27 0 0 0 chrY 16588935 16588962 -34924622 + AT_rich Low_complexity Low_complexity 1 27 0 246 65 0 0 chrY 16589478 16589509 -34924075 + Alu SINE Alu 254 284 -15 3180 216 67 36 chrY 16589526 16590519 -34923065 + L1P LINE L1 1267 2289 -3857 6867 64 0 0 chrY 16590525 16591883 -34921701 - L1PA4 LINE L1 0 6155 4799 33064 75 18 1 chrY 16591884 16596553 -34917031 - L1PA4 LINE L1 -1392 4754 7 245 253 0 10 chrY 16596554 16596653 -34916931 + (TA)n Simple_repeat Simple_repeat 1 98 0 232 267 35 0 chrY 16596688 16596774 -34916810 + L1MC4 LINE L1 6614 6702 -1340 233 257 18 37 chrY 16596815 16596924 -34916660 + L1MC4 LINE L1 6597 6703 -1339 189 107 0 0 chrY 16596930 16596958 -34916626 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 10065 220 31 27 chrY 16597029 16601184 -34912400 + HERVK3 LTR ERVK 2914 7241 -2 2334 159 7 16 chrY 16601187 16601620 -34911964 + LTR3 LTR ERVK 1 429 0 820 217 0 53 chrY 16601620 16601809 -34911775 + AluSg/x SINE Alu 110 288 -24 241 45 23 23 chrY 16601814 16601858 -34911726 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 309 244 56 22 chrY 16601953 16602043 -34911541 + L1MC3 LINE L1 5296 5388 -2654 1451 201 7 13 chrY 16602396 16602738 -34910846 + AluSx SINE Alu 1 340 0 3539 39 28 0 chrY 16602866 16603327 -34910257 - L1P LINE L1 -1118 5028 4555 1276 243 67 49 chrY 16603453 16604021 -34909563 + L1MC3 LINE L1 5386 5963 -1822 314 212 61 0 chrY 16604284 16604383 -34909201 - L1MB3 LINE L1 -11 6172 6068 * 527 160 73 132 chrY 16604377 16604596 -34908988 - L1M4 LINE L1 -625 5559 5354 * 554 235 17 17 chrY 16604569 16604748 -34908836 + L1M4 LINE L1 5067 5245 -901 947 208 23 9 chrY 16604756 16604977 -34908607 + MER50 LTR ERV1 511 734 0 1938 231 45 16 chrY 16605148 16605754 -34907830 - L1MB5 LINE L1 -10 6164 5542 1309 259 155 14 chrY 16605796 16606345 -34907239 - L1M4c LINE L1 -4547 1837 1367 213 39 0 0 chrY 16606345 16606371 -34907213 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1309 259 155 14 chrY 16606371 16606467 -34907117 - L1M4c LINE L1 -5017 1367 1286 1640 197 7 3 chrY 16606467 16606766 -34906818 - AluSc SINE Alu -9 300 1 1309 259 155 14 chrY 16606766 16606809 -34906775 - L1M4c LINE L1 -5098 1286 1051 459 150 43 0 chrY 16606809 16606949 -34906635 + (TA)n Simple_repeat Simple_repeat 1 146 0 234 136 0 0 chrY 16606978 16607022 -34906562 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 243 0 0 0 chrY 16607023 16607050 -34906534 + (GA)n Simple_repeat Simple_repeat 2 28 0 312 302 55 64 chrY 16607065 16607300 -34906284 - L1M4c LINE L1 -5329 1055 823 396 0 0 0 chrY 16607300 16607344 -34906240 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 1208 291 86 38 chrY 16607352 16607381 -34906203 - L1M4c LINE L1 -5509 875 849 2485 43 23 3 chrY 16607381 16607686 -34905898 - AluY SINE Alu 0 311 1 1208 291 86 38 chrY 16607686 16608445 -34905139 - L1M4c LINE L1 -5535 849 49 363 288 109 62 chrY 16608502 16608888 -34904696 - L1M4c LINE L1 -3890 2494 2091 368 353 59 5 chrY 16610047 16610234 -34903350 - L2 LINE L2 -352 2962 2766 808 209 59 14 chrY 16611285 16611505 -34902079 - MLT2A1 LTR ERVL -214 230 1 2025 169 32 0 chrY 16611505 16611912 -34901672 - HERVL-A1 LTR ERVL 0 5654 5235 815 157 0 6 chrY 16611927 16612093 -34901491 + CT-rich Low_complexity Low_complexity 2 166 0 801 122 0 0 chrY 16612084 16612231 -34901353 + (CTTG)n Simple_repeat Simple_repeat 2 148 0 * 17360 179 11 3 chrY 16612233 16616598 -34896986 - HERVL-A1 LTR ERVL -429 5225 714 2309 279 12 3 chrY 16616598 16617193 -34896391 + MER52A LTR ERV1 1156 1755 0 298 0 48 0 chrY 16617532 16617574 -34896010 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 339 261 130 17 chrY 16617587 16617702 -34895882 - MER20 DNA MER1_type -67 152 25 1692 138 20 61 chrY 16617772 16618092 -34895492 + AluSq SINE Alu 1 308 0 258 164 30 60 chrY 16618153 16618220 -34895364 + L1PA10 LINE L1 6103 6167 -1 1121 251 94 4 chrY 16618382 16618649 -34894935 - AluSx SINE Alu -11 301 11 23 0 0 0 chrY 16619505 16619528 -34894056 + AT_rich Low_complexity Low_complexity 1 23 0 2192 89 3 3 chrY 16619904 16620207 -34893377 + AluY SINE Alu 1 303 -8 28 0 0 0 chrY 16620484 16620512 -34893072 + AT_rich Low_complexity Low_complexity 1 28 0 390 91 0 0 chrY 16620686 16620741 -34892843 + (TTC)n Simple_repeat Simple_repeat 3 57 0 26 30 0 0 chrY 16621717 16621750 -34891834 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chrY 16621981 16622014 -34891570 + AT_rich Low_complexity Low_complexity 1 33 0 554 189 0 0 chrY 16624139 16624234 -34889350 + AluJb SINE Alu 87 181 -131 231 217 29 14 chrY 16624463 16624532 -34889052 + (TA)n Simple_repeat Simple_repeat 2 71 0 316 296 23 0 chrY 16624532 16624620 -34888964 + L1MC4 LINE L1 6614 6703 -1339 671 313 104 20 chrY 16624636 16624885 -34888699 + AluJb SINE Alu 2 271 -41 243 111 0 0 chrY 16625574 16625610 -34887974 - Charlie3 DNA MER1_type -22 2688 2653 219 36 0 0 chrY 16625627 16625655 -34887929 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1988 122 3 34 chrY 16626550 16626870 -34886714 - AluY SINE Alu -1 310 1 950 231 0 13 chrY 16626900 16627125 -34886459 + AluSq SINE Alu 81 302 -11 573 0 39 0 chrY 16627137 16627214 -34886370 + (GA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chrY 16627771 16627793 -34885791 + AT_rich Low_complexity Low_complexity 1 22 0 822 274 17 47 chrY 16628499 16628623 -34884961 + AluJo SINE Alu 6 132 -180 531 0 0 0 chrY 16628623 16628682 -34884902 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 822 274 17 47 chrY 16628682 16628856 -34884728 + AluJo SINE Alu 132 295 -17 1068 216 120 30 chrY 16629089 16629423 -34884161 - THE1B LTR MaLR 0 364 1 3000 200 2 2 chrY 16629423 16629979 -34883605 - THE1B-int LTR MaLR 0 1580 1025 222 37 0 0 chrY 16630177 16630204 -34883380 + (A)n Simple_repeat Simple_repeat 1 27 0 279 0 0 0 chrY 16631120 16631151 -34882433 + (TA)n Simple_repeat Simple_repeat 2 32 0 1107 239 98 11 chrY 16632458 16632734 -34880850 + AluSx SINE Alu 1 300 -2 185 0 0 39 chrY 16632883 16632909 -34880675 + (TTTAA)n Simple_repeat Simple_repeat 1 25 0 686 207 0 0 chrY 16632910 16633045 -34880539 - L1PA10 LINE L1 -12 6156 6022 1013 210 23 37 chrY 16633061 16633361 -34880223 - L1PA10 LINE L1 -390 5778 5483 180 0 0 0 chrY 16633442 16633462 -34880122 + (A)n Simple_repeat Simple_repeat 1 20 0 297 250 10 21 chrY 16633475 16633571 -34880013 + MER20 DNA MER1_type 101 195 -24 3069 276 43 1 chrY 16633866 16634673 -34878911 - MER52A LTR ERV1 0 1755 915 889 271 47 103 chrY 16634641 16635164 -34878420 - MER52A LTR ERV1 -164 1114 645 765 189 7 7 chrY 16635164 16635317 -34878267 + MLT2A1 LTR ERVL 1 153 -291 8977 193 26 5 chrY 16635318 16637103 -34876481 + HERVL-A1 LTR ERVL 1378 3200 -2454 826 188 0 0 chrY 16637101 16637255 -34876329 + HERVL-A1 LTR ERVL 4503 4656 -998 * 2112 172 21 3 chrY 16637243 16637632 -34875952 + HERVL-A1 LTR ERVL 3201 3596 -2058 * 10513 156 6 20 chrY 16637626 16639498 -34874086 + HERVL-A1 LTR ERVL 3810 5654 0 1424 182 89 29 chrY 16639498 16639878 -34873706 + MLT2A1 LTR ERVL 1 403 -41 238 250 0 0 chrY 16639878 16639926 -34873658 + (CA)n Simple_repeat Simple_repeat 1 48 0 39219 62 2 15 chrY 16639979 16646212 -34867372 - L1PA4 LINE L1 -2 6153 3 34087 83 8 6 chrY 16646211 16651165 -34862419 - L1P LINE L1 -1141 5005 44 * 180 0 0 0 chrY 16651349 16651369 -34862215 + (A)n Simple_repeat Simple_repeat 1 20 0 180 152 0 0 chrY 16651644 16651677 -34861907 + (TAA)n Simple_repeat Simple_repeat 1 33 0 268 228 0 0 chrY 16653010 16653067 -34860517 - MER20 DNA MER1_type -73 146 90 345 350 70 11 chrY 16653113 16653299 -34860285 + L2 LINE L2 2766 2962 -352 1232 307 99 27 chrY 16654527 16655043 -34858541 + L1M4c LINE L1 23 614 -5770 357 24 0 0 chrY 16655043 16655085 -34858499 + (CA)n Simple_repeat Simple_repeat 1 42 0 1232 307 99 27 chrY 16655085 16655339 -34858245 + L1M4c LINE L1 614 848 -5536 22 0 0 0 chrY 16655406 16655428 -34858156 + AT_rich Low_complexity Low_complexity 1 22 0 1141 272 110 21 chrY 16655534 16656699 -34856885 + L1M4c LINE L1 812 2180 -4204 1862 145 3 27 chrY 16657127 16657453 -34856131 + AluY SINE Alu 1 319 0 325 153 34 0 chrY 16658730 16658789 -34854795 + LTR25 LTR ERV1 481 541 -253 * 1187 265 42 0 chrY 16658785 16659143 -34854441 + LTR25 LTR ERV1 422 794 0 1137 224 67 70 chrY 16659309 16659942 -34853642 + L1M4c LINE L1 1214 1941 -4443 2146 85 0 11 chrY 16659942 16660269 -34853315 + AluY SINE Alu 1 324 0 1137 224 67 70 chrY 16660269 16660525 -34853059 + L1M4c LINE L1 1941 2196 -4188 550 267 8 0 chrY 16663407 16663538 -34850046 - MER21B LTR ERV1 -485 378 247 1260 360 6 0 chrY 16663547 16664022 -34849562 - MER52A LTR ERV1 0 1755 1278 1592 272 19 55 chrY 16664024 16664753 -34848831 - LTR25-int LTR ERV1 -4448 2548 1846 22 0 0 0 chrY 16664876 16664898 -34848686 + AT_rich Low_complexity Low_complexity 1 22 0 712 255 100 93 chrY 16664962 16665500 -34848084 + LTR25 LTR ERV1 253 794 0 1408 189 21 24 chrY 16665568 16665859 -34847725 + AluY SINE Alu 1 290 -21 1858 244 62 54 chrY 16665976 16666749 -34846835 + LTR25-int LTR ERV1 100 878 -6118 5136 158 6 2 chrY 16766766 16767744 -34745840 - L1P3 LINE L1 -2597 3864 2883 4253 176 38 21 chrY 16767733 16768573 -34745011 - L1P3 LINE L1 -5338 1123 270 * 1071 204 0 0 chrY 16768581 16768782 -34744802 - L1P3 LINE L1 -6256 205 5 22 0 0 0 chrY 16768793 16768815 -34744769 + AT_rich Low_complexity Low_complexity 1 22 0 615 245 102 23 chrY 16768836 16769355 -34744229 + L1MC/D LINE L1 5017 5562 -748 927 193 0 100 chrY 16769974 16770213 -34743371 + AluSc SINE Alu 1 215 -94 1223 232 0 48 chrY 16770700 16770828 -34742756 + AluSx SINE Alu 1 134 -178 1367 211 19 19 chrY 16770828 16771140 -34742444 + AluSx SINE Alu 1 312 0 1223 232 0 48 chrY 16771140 16771321 -34742263 + AluSx SINE Alu 134 295 -17 280 286 135 15 chrY 16771644 16771777 -34741807 - MIR SINE MIR -60 202 54 28 0 0 0 chrY 16772736 16772764 -34740820 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrY 16772971 16772995 -34740589 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrY 16773023 16773052 -34740532 + AT_rich Low_complexity Low_complexity 1 29 0 280 125 0 0 chrY 16775322 16775370 -34738214 + FLAM SINE Alu 83 130 -3 232 335 177 6 chrY 16775977 16776141 -34737443 + L3 LINE CR1 191 382 -1195 1763 176 3 19 chrY 16776643 16776950 -34736634 + AluSg SINE Alu 1 302 -8 1670 192 3 7 chrY 16777070 16777367 -34736217 + AluSq SINE Alu 1 296 -17 1198 279 25 0 chrY 16777530 16777813 -34735771 - AluJb SINE Alu -12 290 1 412 326 96 57 chrY 16778041 16778342 -34735242 - L2 LINE L2 -19 3253 2941 216 0 0 0 chrY 16780448 16780472 -34733112 + (A)n Simple_repeat Simple_repeat 1 24 0 593 221 48 28 chrY 16780622 16780644 -34732940 - AluJo SINE Alu -162 150 130 288 53 0 0 chrY 16780644 16780682 -34732902 + (TTA)n Simple_repeat Simple_repeat 2 39 0 593 221 48 28 chrY 16780682 16780804 -34732780 - AluJo SINE Alu -182 130 3 249 139 0 0 chrY 16780963 16781006 -34732578 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 192 77 0 0 chrY 16781085 16781111 -34732473 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 353 272 24 0 chrY 16782635 16782760 -34730824 + FLAM_C SINE Alu 6 133 0 356 331 76 0 chrY 16782768 16782925 -34730659 + FAM SINE Alu 1 169 -6 1727 175 18 7 chrY 16783024 16783309 -34730275 + AluSx SINE Alu 3 290 -22 1073 209 14 0 chrY 16783401 16783616 -34729968 + L1MC1 LINE L1 6108 6325 -8 723 196 0 0 chrY 16784431 16784589 -34728995 + GA-rich Low_complexity Low_complexity 4 161 0 842 232 48 0 chrY 16786724 16786931 -34726653 - MER20 DNA MER1_type 0 219 3 207 0 0 0 chrY 16787258 16787281 -34726303 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10832 71 1 6 chrY 16787703 16789196 -34724388 + L1PA4 LINE L1 14 1498 -4648 9647 52 0 8 chrY 16789215 16791233 -34722351 + L1PA4 LINE L1 4128 6155 0 1236 263 54 23 chrY 16791261 16791702 -34721882 - MLT1D LTR MaLR -23 482 28 232 146 49 0 chrY 16792037 16792078 -34721506 + Alu SINE Alu 1 43 -90 1213 205 31 0 chrY 16792103 16792327 -34721257 + AluSx SINE Alu 16 246 -66 460 222 234 23 chrY 16792349 16792520 -34721064 - MER3 DNA MER1_type 0 209 3 189 107 36 18 chrY 16792928 16792984 -34720600 + (CA)n Simple_repeat Simple_repeat 2 58 0 365 289 78 0 chrY 16793250 16793392 -34720192 - MER58B DNA MER1_type 0 341 189 228 281 0 31 chrY 16793419 16793483 -34720101 - L2 LINE L2 -1 3312 3251 207 314 76 9 chrY 16793515 16793620 -34719964 - MIR SINE MIR -133 129 18 319 54 0 36 chrY 16793780 16793836 -34719748 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 737 190 14 114 chrY 16793878 16794089 -34719495 - AluJb SINE Alu -119 193 4 663 267 58 24 chrY 16796257 16796681 -34716903 - MLT1C LTR MaLR -7 460 2 1575 196 3 7 chrY 16798066 16798372 -34715212 - AluSx SINE Alu 0 312 8 344 267 13 0 chrY 16798962 16799037 -34714547 + AluS SINE Alu 3 78 -225 353 322 54 50 chrY 16802665 16802963 -34710621 - MER46C DNA MER2_type -39 299 1 1225 168 10 0 chrY 16803874 16804076 -34709508 - AluSg/x SINE Alu -29 280 77 474 267 6 56 chrY 16805550 16805711 -34707873 + FRAM SINE Alu 4 156 -20 960 170 0 0 chrY 16806385 16806550 -34707034 + U1 snRNA snRNA 1 165 0 25 0 0 0 chrY 16807234 16807259 -34706325 + AT_rich Low_complexity Low_complexity 1 25 0 946 106 17 22 chrY 16807703 16807882 -34705702 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1348 209 46 7 chrY 16807885 16808168 -34705416 - AluSp SINE Alu -9 294 1 26 30 0 0 chrY 16808427 16808460 -34705124 + AT_rich Low_complexity Low_complexity 1 33 0 1345 303 79 78 chrY 16808800 16809966 -34703618 - MER21-int LTR ERV1 -1011 3180 2014 1210 244 21 37 chrY 16810211 16810646 -34702938 - L1MA4 LINE L1 -11 6289 5862 180 276 17 52 chrY 16811241 16811299 -34702285 + MIR SINE MIR 89 144 -64 27 0 0 0 chrY 16812082 16812109 -34701475 + AT_rich Low_complexity Low_complexity 1 27 0 207 130 70 9 chrY 16812635 16812750 -34700834 + (TA)n Simple_repeat Simple_repeat 1 122 0 331 98 98 6 chrY 16812762 16812926 -34700658 + (TA)n Simple_repeat Simple_repeat 2 180 0 386 137 46 30 chrY 16812930 16813061 -34700523 + (TATAA)n Simple_repeat Simple_repeat 1 133 0 291 106 99 0 chrY 16813065 16813216 -34700368 + (TA)n Simple_repeat Simple_repeat 2 167 0 2530 58 3 0 chrY 16814248 16814558 -34699026 + AluY SINE Alu 1 311 0 845 183 33 70 chrY 16814795 16815008 -34698576 + AluSg/x SINE Alu 69 273 -37 634 267 17 0 chrY 16815355 16815531 -34698053 + L1MB7 LINE L1 5985 6163 -21 847 296 98 22 chrY 16815564 16816023 -34697561 - L2 LINE L2 -658 2656 2163 1098 246 52 7 chrY 16816073 16816362 -34697222 + AluJo SINE Alu 1 302 0 36 0 0 0 chrY 16816374 16816410 -34697174 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chrY 16819063 16819092 -34694492 + AT_rich Low_complexity Low_complexity 1 29 0 1610 171 0 0 chrY 16819513 16819777 -34693807 - AluSg SINE Alu -45 265 2 1196 202 14 0 chrY 16819842 16820065 -34693519 + AluSx SINE Alu 1 226 -86 216 0 0 0 chrY 16820102 16820126 -34693458 + (TG)n Simple_repeat Simple_repeat 2 25 0 204 40 0 0 chrY 16820139 16820164 -34693420 + (CA)n Simple_repeat Simple_repeat 1 25 0 647 243 20 48 chrY 16820209 16820563 -34693021 - L1 LINE L1 -825 6740 6397 437 359 0 0 chrY 16820563 16820708 -34692876 - FRAM SINE Alu -31 145 1 4697 223 63 46 chrY 16820708 16822240 -34691344 - L1 LINE L1 -1140 6425 4867 1334 270 113 7 chrY 16822300 16822901 -34690683 - L1 LINE L1 -3007 4558 3894 741 284 76 29 chrY 16822938 16823151 -34690433 - L1 LINE L1 -4521 2975 2773 1318 211 3 61 chrY 16823151 16823463 -34690121 - AluSq SINE Alu -19 294 1 741 284 76 29 chrY 16823463 16824002 -34689582 - L1 LINE L1 -4723 2773 1967 526 292 168 0 chrY 16824390 16824575 -34689009 - AluSp SINE Alu -97 216 1 243 375 23 8 chrY 16825065 16825193 -34688391 + L2 LINE L2 2464 2593 -721 295 206 0 65 chrY 16826783 16826875 -34686709 - L1 LINE L1 -964 5182 5097 1662 183 33 19 chrY 16826900 16827266 -34686318 + L1MA7 LINE L1 5596 5966 -325 567 267 7 7 chrY 16827267 16827413 -34686171 + FRAM SINE Alu 1 146 -30 963 199 40 87 chrY 16827419 16827607 -34685977 + L1MA7 LINE L1 5944 6109 -182 1585 196 0 0 chrY 16827607 16827892 -34685692 + AluSq SINE Alu 4 288 -25 963 199 40 87 chrY 16827892 16828067 -34685517 + L1MA7 LINE L1 6109 6291 0 1172 209 17 17 chrY 16828550 16828789 -34684795 - AluSx SINE Alu -69 243 5 200 356 174 9 chrY 16828845 16829179 -34684405 + L2 LINE L2 1735 2123 -1191 222 236 0 0 chrY 16829204 16829259 -34684325 + CT-rich Low_complexity Low_complexity 4 58 0 497 281 118 0 chrY 16829260 16829413 -34684171 - FAM SINE Alu -4 171 1 22 0 0 0 chrY 16830078 16830100 -34683484 + AT_rich Low_complexity Low_complexity 1 22 0 29 104 0 0 chrY 16830322 16830428 -34683156 + AT_rich Low_complexity Low_complexity 1 106 0 1872 157 0 0 chrY 16831036 16831322 -34682262 + AluSx SINE Alu 3 288 -24 454 323 131 34 chrY 16831433 16831907 -34681677 + L1M4 LINE L1 84 603 -5939 429 252 9 9 chrY 16831943 16832058 -34681526 - AluJb SINE Alu -30 282 168 694 256 54 10 chrY 16832059 16832262 -34681322 - AluJb SINE Alu -98 214 3 229 51 51 0 chrY 16832406 16832445 -34681139 + T-rich Low_complexity Low_complexity 5 45 0 1558 269 96 50 chrY 16832473 16833708 -34679876 + L1M4 LINE L1 858 2158 -4488 857 242 131 11 chrY 16833721 16833981 -34679603 + AluJo SINE Alu 10 300 -12 428 302 81 16 chrY 16834042 16834423 -34679161 + L1M4 LINE L1 2290 2695 -3951 874 285 42 47 chrY 16834512 16834915 -34678669 + L1M4 LINE L1 2914 3314 -3330 186 171 0 0 chrY 16834921 16834962 -34678622 + T-rich Low_complexity Low_complexity 1 41 0 1430 198 34 0 chrY 16834985 16835253 -34678331 - AluSx SINE Alu -35 277 1 266 261 97 15 chrY 16835287 16835421 -34678163 + L1M4 LINE L1 3351 3495 -3149 3785 258 31 43 chrY 16835595 16836722 -34676862 + L1MB1 LINE L1 56 1170 -4357 1624 206 0 3 chrY 16836722 16837054 -34676530 + AluSx SINE Alu 4 312 0 3785 258 31 43 chrY 16837054 16837344 -34676240 + L1MB1 LINE L1 1170 1462 -4065 261 0 0 0 chrY 16839250 16839279 -34674305 + (A)n Simple_repeat Simple_repeat 1 29 0 310 234 56 9 chrY 16839279 16839386 -34674198 + L1MB1 LINE L1 1450 1561 -4767 2391 275 37 33 chrY 16839390 16840439 -34673145 + L1MB1 LINE L1 1963 3038 -3290 2173 106 0 0 chrY 16840439 16840731 -34672853 - AluY SINE Alu -14 297 6 2391 275 37 33 chrY 16840731 16841079 -34672505 + L1MB1 LINE L1 3038 3383 -2945 * 3169 243 91 18 chrY 16841055 16842107 -34671477 + L1MB1 LINE L1 4330 5561 -810 3843 114 12 2 chrY 16842107 16842688 -34670896 + LTR14C LTR ERVK 1 587 0 3169 243 91 18 chrY 16842688 16843281 -34670303 + L1MB1 LINE L1 5561 6109 -262 880 248 33 5 chrY 16843285 16843495 -34670089 - MSTB1 LTR MaLR -216 216 1 239 276 38 19 chrY 16843495 16843600 -34669984 + L1MA9 LINE L1 6168 6274 -38 24 0 0 0 chrY 16843607 16843631 -34669953 + AT_rich Low_complexity Low_complexity 1 24 0 30102 135 13 16 chrY 16843632 16849796 -34663788 - L1PA6 LINE L1 -10 6144 11 416 115 0 0 chrY 16849835 16849896 -34663688 - Alu SINE Alu -15 295 235 4503 86 0 0 chrY 16850142 16850727 -34662857 - LTR14C LTR ERVK 0 587 3 293 291 153 41 chrY 16851601 16851797 -34661787 + MIR SINE MIR 44 261 -1 24 32 0 0 chrY 16852675 16852706 -34660878 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chrY 16853659 16853688 -34659896 + (T)n Simple_repeat Simple_repeat 1 29 0 514 269 56 53 chrY 16854546 16854940 -34658644 - L1ME2 LINE L1 -184 5980 5583 225 219 16 47 chrY 16855727 16855791 -34657793 + MER50 LTR ERV1 10 71 -663 237 226 0 0 chrY 16855822 16855884 -34657700 + L1MB3 LINE L1 5498 5559 -612 * 320 235 29 10 chrY 16855880 16855982 -34657602 + L1MB3 LINE L1 6070 6173 -10 465 165 0 12 chrY 16856069 16856154 -34657430 - AluY SINE Alu -18 293 210 1572 174 75 6 chrY 16856160 16856493 -34657091 - LTR22B LTR ERVK -136 356 1 15956 185 26 42 chrY 16856854 16859144 -34654440 + L1PA8 LINE L1 6 2331 -4130 1883 132 16 29 chrY 16859144 16859455 -34654129 + AluY SINE Alu 3 309 -2 15956 185 26 42 chrY 16859455 16860550 -34653034 + L1PA8 LINE L1 2331 3442 -3019 1216 240 6 41 chrY 16860550 16860867 -34652717 + AluSx SINE Alu 1 306 -6 15956 185 26 42 chrY 16860867 16862399 -34651185 + L1PA8 LINE L1 3442 4879 -1582 5246 138 33 5 chrY 16862402 16863699 -34649885 + L1PA8 LINE L1 5141 6480 -7 321 251 107 2 chrY 16864217 16864392 -34649192 - L1ME2 LINE L1 -765 5381 5188 1093 253 0 4 chrY 16864408 16864665 -34648919 - AluSx SINE Alu -21 291 36 291 272 88 22 chrY 16864856 16865128 -34648456 - L1ME2 LINE L1 -1187 4959 4670 270 0 0 0 chrY 16865223 16865253 -34648331 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 989 207 103 16 chrY 16865265 16865507 -34648077 - AluJb SINE Alu -47 265 3 392 284 51 47 chrY 16865509 16865724 -34647860 - L1ME2 LINE L1 -1635 4511 4296 2161 175 34 79 chrY 16866781 16867398 -34646186 - MER4B LTR ERV1 -25 754 1 21 36 0 0 chrY 16867430 16867458 -34646126 + AT_rich Low_complexity Low_complexity 1 28 0 1023 231 97 7 chrY 16867787 16868056 -34645528 - AluJb SINE Alu -1 311 19 22 0 0 0 chrY 16868365 16868387 -34645197 + AT_rich Low_complexity Low_complexity 1 22 0 597 295 73 23 chrY 16868972 16869491 -34644093 - L1M4 LINE L1 -1747 4635 4091 308 200 32 8 chrY 16869880 16870005 -34643579 + (TTAGGG)n Simple_repeat Simple_repeat 3 130 0 198 227 5 38 chrY 16870031 16870216 -34643368 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 182 192 20 20 chrY 16870331 16870430 -34643154 + (TTAGGG)n Simple_repeat Simple_repeat 4 102 0 214 193 12 24 chrY 16870518 16870601 -34642983 + (TTAGGG)n Simple_repeat Simple_repeat 6 87 0 349 207 16 36 chrY 16870710 16871026 -34642558 + (TTAGGG)n Simple_repeat Simple_repeat 1 309 0 406 362 53 4 chrY 16871036 16871114 -34642470 + MER52A LTR ERV1 820 893 -862 386 68 0 17 chrY 16871114 16871173 -34642411 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 1517 208 11 0 chrY 16871176 16871455 -34642129 - AluSp SINE Alu -30 283 2 406 362 53 4 chrY 16871455 16871637 -34641947 + MER52A LTR ERV1 894 1097 -658 * 1661 326 45 18 chrY 16871604 16872270 -34641314 + MER52A LTR ERV1 923 1606 -149 1400 259 96 9 chrY 16874254 16875196 -34638388 - L1M4 LINE L1 -4173 2211 1088 1658 171 4 0 chrY 16875196 16875476 -34638108 - AluSc SINE Alu 0 301 21 189 0 0 0 chrY 16875488 16875509 -34638075 + (TG)n Simple_repeat Simple_repeat 2 22 0 839 126 8 0 chrY 16875509 16875628 -34637956 - AluY SINE Alu -191 120 1 430 282 145 55 chrY 16875774 16876249 -34637335 - L1M4c LINE L1 -3884 2500 1983 21 36 0 0 chrY 16876472 16876500 -34637084 + AT_rich Low_complexity Low_complexity 1 28 0 317 323 60 65 chrY 16877312 16877513 -34636071 - L2 LINE L2 -352 2962 2763 1871 105 101 21 chrY 16877844 16878130 -34635454 + AluY SINE Alu 1 309 -2 397 203 0 0 chrY 16878523 16878602 -34634982 - HERVL LTR ERVL -4866 788 710 2064 284 19 12 chrY 16878603 16879194 -34634390 + MER52A LTR ERV1 1161 1755 0 437 272 208 0 chrY 16879388 16879513 -34634071 - AluSq SINE Alu -26 287 137 1752 192 0 7 chrY 16879823 16879949 -34633635 + AluSq SINE Alu 1 126 -187 225 0 0 0 chrY 16879949 16879974 -34633610 + (CA)n Simple_repeat Simple_repeat 2 26 0 1752 192 0 7 chrY 16879974 16880139 -34633445 + AluSq SINE Alu 126 290 -23 35 24 0 0 chrY 16880281 16880323 -34633261 + AT_rich Low_complexity Low_complexity 1 42 0 1162 249 90 4 chrY 16880470 16880747 -34632837 - AluSx SINE Alu -11 301 1 40314 58 2 1 chrY 16881047 16887196 -34626388 - L1PA3 LINE L1 0 6155 2 22 0 0 0 chrY 16889595 16889617 -34623967 + AT_rich Low_complexity Low_complexity 1 22 0 2057 124 27 10 chrY 16889872 16890170 -34623414 - AluY SINE Alu -8 303 1 1040 172 11 6 chrY 16890331 16890718 -34622866 + ALR/Alpha Satellite centromeric 1 385 -5893 207 0 0 0 chrY 16890718 16890741 -34622843 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1040 172 11 6 chrY 16890741 16896565 -34617019 + ALR/Alpha Satellite centromeric 385 6265 -13 972 166 15 5 chrY 16896579 16899346 -34614238 + ALR/Alpha Satellite centromeric 1 2796 0 34466 72 5 86 chrY 16899351 16903803 -34609781 + L1PA4 LINE L1 9 3819 -2336 1657 25 0 0 chrY 16903803 16903999 -34609585 + L1PA2 LINE L1 5958 6155 0 34466 72 5 86 chrY 16903999 16905684 -34607900 + L1PA4 LINE L1 3819 5639 -516 2158 66 0 0 chrY 16905684 16905979 -34607605 + L1PA4 LINE L1 5867 6162 0 934 185 8 6 chrY 16906012 16907363 -34606221 + ALR/Alpha Satellite centromeric 1 1353 0 5778 148 23 33 chrY 16907377 16908455 -34605129 - MER11C LTR ERVK -4 1067 1 6672 102 7 0 chrY 16908455 16909432 -34604152 - HERVK11 LTR ERVK 0 7953 6970 180 190 69 52 chrY 16909432 16909490 -34604094 - L2 LINE L2 -64 3208 3150 7442 100 6 0 chrY 16909490 16910614 -34602970 - HERVK11 LTR ERVK -1246 6707 5525 2798 125 0 0 chrY 16910612 16911035 -34602549 - HERVK11 LTR ERVK -3352 4601 4179 * 1123 168 9 7 chrY 16911035 16920960 -34592624 + ALR/Alpha Satellite centromeric 1 9946 0 1047 156 6 0 chrY 16920971 16922067 -34591517 + ALR/Alpha Satellite centromeric 1 1102 0 980 161 9 6 chrY 16922086 16922253 -34591331 + ALR/Alpha Satellite centromeric 1 166 -1521 1994 145 0 7 chrY 16922253 16922563 -34591021 + AluY SINE Alu 1 308 -3 980 161 9 6 chrY 16922563 16923762 -34589822 + ALR/Alpha Satellite centromeric 166 1679 -8 3964 123 19 0 chrY 16923762 16924338 -34589246 + LTR14C LTR ERVK 1 587 0 5293 134 17 4 chrY 16924338 16925727 -34587857 + HERVK14C LTR ERVK 1 1489 -5928 965 177 4 1 chrY 16925727 16926831 -34586753 + ALR/Alpha Satellite centromeric 1 1108 0 26010 122 38 11 chrY 16926832 16931233 -34582351 + L1P LINE L1 1 4524 -1622 921 162 30 1 chrY 16931233 16931981 -34581603 + ALR/Alpha Satellite centromeric 1 770 -32 1021 124 0 0 chrY 16931981 16932126 -34581458 + AluY SINE Alu 166 310 -1 1057 185 12 7 chrY 16932128 16933976 -34579608 + ALR/Alpha Satellite centromeric 1 1839 -6957 1506 184 7 4 chrY 16933976 16934253 -34579331 + AluSg1 SINE Alu 12 289 -20 1057 185 12 7 chrY 16934253 16940881 -34572703 + ALR/Alpha Satellite centromeric 1839 8795 -1 928 185 7 23 chrY 16940892 16941328 -34572256 + ALR/Alpha Satellite centromeric 1 442 -2007 1914 148 0 7 chrY 16941328 16941619 -34571965 + AluY SINE Alu 15 303 -8 928 185 7 23 chrY 16941619 16942050 -34571534 + ALR/Alpha Satellite centromeric 442 878 -1571 1501 197 39 11 chrY 16942050 16942334 -34571250 + AluSp SINE Alu 1 292 -21 928 185 7 23 chrY 16942334 16943365 -34570219 + ALR/Alpha Satellite centromeric 878 2434 -15 2766 203 9 19 chrY 16943365 16944044 -34569540 - L1P LINE L1 -4369 1777 1106 1807 186 0 7 chrY 16944049 16944350 -34569234 - AluSg SINE Alu -11 299 1 527 219 16 8 chrY 16945035 16945163 -34568421 + AluJb SINE Alu 13 141 -171 32 26 0 0 chrY 16945180 16945219 -34568365 + AT_rich Low_complexity Low_complexity 1 39 0 884 232 130 8 chrY 16945297 16945551 -34568033 - AluJo SINE Alu -17 285 1 259 282 36 27 chrY 16945874 16945984 -34567600 + LTR54B LTR ERV1 36 146 -352 237 269 0 0 chrY 16946052 16946119 -34567465 + LTR54 LTR ERV1 407 473 -37 1780 126 82 4 chrY 16946130 16946399 -34567185 + AluSg SINE Alu 12 301 -9 508 200 11 0 chrY 16947753 16947928 -34565656 + GA-rich Low_complexity Low_complexity 2 178 0 552 195 0 0 chrY 16947956 16948110 -34565474 + GA-rich Low_complexity Low_complexity 2 155 0 24 0 0 0 chrY 16948606 16948630 -34564954 + AT_rich Low_complexity Low_complexity 1 24 0 1719 148 7 0 chrY 16950033 16950304 -34563280 - AluSp SINE Alu -36 277 5 687 219 0 7 chrY 16950520 16950657 -34562927 - MER39B LTR ERV1 -242 411 276 521 274 21 21 chrY 16950659 16950849 -34562735 + MER39B LTR ERV1 462 651 -2 1661 146 36 7 chrY 16951165 16951439 -34562145 + AluSx SINE Alu 10 291 -21 884 264 7 29 chrY 16951635 16951915 -34561669 - L1PA15 LINE L1 -1 6164 5891 741 160 6 13 chrY 16952384 16952540 -34561044 + GA-rich Low_complexity Low_complexity 2 156 0 896 216 106 38 chrY 16952578 16952842 -34560742 + AluJo SINE Alu 1 282 -30 392 132 5 0 chrY 16952919 16952989 -34560595 + AluJ/FLAM SINE Alu 5 62 -240 1587 129 3 99 chrY 16953158 16953490 -34560094 + AluSg SINE Alu 11 310 0 1198 182 0 22 chrY 16953501 16953732 -34559852 + AluSg SINE Alu 81 306 -4 1644 175 49 0 chrY 16953737 16954022 -34559562 + AluSg SINE Alu 1 299 -11 243 38 57 38 chrY 16954107 16954160 -34559424 + T-rich Low_complexity Low_complexity 2 55 0 1322 178 5 0 chrY 16954162 16954376 -34559208 - AluSc SINE Alu -43 266 52 353 58 19 0 chrY 16954377 16954429 -34559155 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 542 253 103 23 chrY 16954431 16954605 -34558979 - AluJb SINE Alu 0 312 125 868 155 292 23 chrY 16954625 16954844 -34558740 - AluSg1 SINE Alu -26 283 6 2059 130 10 0 chrY 16955792 16956085 -34557499 - AluY SINE Alu -13 298 3 864 271 44 60 chrY 16956958 16957324 -34556260 - MLT1B LTR MaLR -6 384 25 2163 125 0 6 chrY 16957811 16958124 -34555460 + AluY SINE Alu 1 311 0 1849 180 3 0 chrY 16958575 16958880 -34554704 + AluSp SINE Alu 1 306 -7 296 240 144 50 chrY 16959054 16959467 -34554117 + L1M3c LINE L1 915 1335 -4806 * 966 314 20 5 chrY 16959445 16959957 -34553627 + L1MB2 LINE L1 1132 2051 -4160 1846 157 0 10 chrY 16960168 16960461 -34553123 + AluSg SINE Alu 1 290 -20 243 0 0 0 chrY 16960515 16960542 -34553042 + (CA)n Simple_repeat Simple_repeat 2 28 0 701 292 39 64 chrY 16960620 16960918 -34552666 + L1MB2 LINE L1 2154 2458 -3752 2028 134 3 0 chrY 16960918 16961208 -34552376 + AluY SINE Alu 1 291 -20 701 292 39 64 chrY 16961208 16961317 -34552267 + L1MB2 LINE L1 2458 2568 -3642 255 79 0 0 chrY 16961317 16961355 -34552229 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 701 292 39 64 chrY 16961355 16961759 -34551825 + L1MB2 LINE L1 2568 2945 -3265 712 253 34 37 chrY 16961768 16962065 -34551519 + L1MB2 LINE L1 4755 5050 -1332 1217 266 26 38 chrY 16962096 16962597 -34550987 + L1MB2 LINE L1 5910 6404 -3 1536 176 75 0 chrY 16962614 16962881 -34550703 + AluSx SINE Alu 5 291 -21 24 0 0 0 chrY 16963171 16963195 -34550389 + AT_rich Low_complexity Low_complexity 1 24 0 2315 105 3 9 chrY 16963680 16963995 -34549589 - AluSp SINE Alu 0 313 1 34 0 0 0 chrY 16964220 16964254 -34549330 + AT_rich Low_complexity Low_complexity 1 34 0 1825 154 0 30 chrY 16964293 16964592 -34548992 - AluSg SINE Alu -20 290 1 786 224 78 15 chrY 16965066 16965271 -34548313 + L1MB7 LINE L1 5905 6122 -62 561 183 32 24 chrY 16965271 16965397 -34548187 - FLAM_C SINE Alu -6 137 11 369 200 95 0 chrY 16965465 16965560 -34548024 + L1MC4a LINE L1 5812 5915 -1893 1970 119 0 61 chrY 16966204 16966562 -34547022 - AluY SINE Alu 0 311 1 229 296 68 0 chrY 16967256 16967344 -34546240 - L2 LINE L2 -496 2818 2725 629 284 53 69 chrY 16967980 16968046 -34545538 + L1M4c LINE L1 804 870 -5433 1793 161 11 7 chrY 16968046 16968373 -34545211 - AluSx SINE Alu 0 328 1 629 284 53 69 chrY 16968373 16969013 -34544571 + L1M4c LINE L1 870 1662 -4641 424 289 15 37 chrY 16968985 16969258 -34544326 + L1M4c LINE L1 1590 1856 -4528 * 186 71 0 0 chrY 16970591 16970619 -34542965 + (TG)n Simple_repeat Simple_repeat 2 29 0 1820 164 4 4 chrY 16971692 16972033 -34541551 + AluSg SINE Alu 2 342 0 456 172 0 0 chrY 16976559 16976646 -34536938 + (CA)n Simple_repeat Simple_repeat 2 88 0 1387 228 0 4 chrY 16976646 16976922 -34536662 - AluJo SINE Alu -37 275 1 290 195 0 61 chrY 16976960 16977042 -34536542 + AluJ/FRAM SINE Alu 226 302 0 218 292 28 0 chrY 16977692 16977764 -34535820 + MIR SINE MIR 54 127 -81 5411 123 16 35 chrY 16977774 16978133 -34535451 + L1PA8 LINE L1 4679 5043 -1129 1584 172 3 56 chrY 16978133 16978435 -34535149 - AluSg SINE Alu -24 286 1 5411 123 16 35 chrY 16978435 16978801 -34534783 + L1PA8 LINE L1 5043 5414 -758 1598 163 58 14 chrY 16978801 16979096 -34534488 + AluSg SINE Alu 1 308 -2 5411 123 16 35 chrY 16979096 16979808 -34533776 + L1PA8 LINE L1 5414 6085 -87 252 114 0 0 chrY 16979809 16979844 -34533740 + Alu SINE Alu 5 39 -260 619 160 7 69 chrY 16979844 16979988 -34533596 + L1PA8A LINE L1 5997 6131 0 237 178 0 0 chrY 16980022 16980067 -34533517 + G-rich Low_complexity Low_complexity 2 46 0 304 247 25 0 chrY 16980902 16980983 -34532601 - HERV30 LTR ERV1 -1 6528 6446 422 244 92 23 chrY 16981183 16981357 -34532227 - HERV30 LTR ERV1 -261 7131 7001 346 296 91 56 chrY 16982855 16983425 -34530159 - HERV30 LTR ERV1 -1155 5499 5182 484 253 91 81 chrY 16983661 16984044 -34529540 - HERV30 LTR ERV1 -4378 2151 1765 283 283 34 45 chrY 16984798 16984982 -34528602 - HERV30 LTR ERV1 -6727 1530 676 1906 131 26 7 chrY 16985950 16986255 -34527329 + AluY SINE Alu 1 311 0 517 266 58 0 chrY 16986262 16986416 -34527168 - MER93a LTR ERV1 -20 382 220 2174 116 10 0 chrY 16986416 16986717 -34526867 + AluSp SINE Alu 1 304 -9 1043 291 47 19 chrY 16986758 16987229 -34526355 - L1M4 LINE L1 -1821 4325 3842 285 225 62 0 chrY 16987238 16987318 -34526266 - L1M4 LINE L1 -2551 3595 3511 893 211 12 50 chrY 16987996 16988082 -34525502 - L1MB4 LINE L1 -273 5907 5819 1285 243 3 26 chrY 16988082 16988387 -34525197 - AluJb SINE Alu -13 299 2 893 211 12 50 chrY 16988387 16988542 -34525042 - L1MB4 LINE L1 -361 5819 5675 1239 204 0 5 chrY 16988614 16988834 -34524750 + AluSx SINE Alu 7 225 -87 1195 208 72 74 chrY 16988901 16989374 -34524210 - L1MB4 LINE L1 -551 5629 5174 449 269 8 0 chrY 16989464 16989598 -34523986 - L1MB4 LINE L1 -990 5156 5022 6085 215 16 11 chrY 16989600 16990321 -34523263 - L1PA14 LINE L1 -4 6157 5441 2177 149 0 0 chrY 16990321 16990630 -34522954 - AluSc SINE Alu 0 309 1 6085 215 16 11 chrY 16990630 16991077 -34522507 - L1PA14 LINE L1 -720 5441 4997 425 19 19 0 chrY 16991077 16991131 -34522453 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 6085 215 16 11 chrY 16991131 16991448 -34522136 - L1PA14 LINE L1 -1164 4997 4683 195 42 0 0 chrY 16991448 16991472 -34522112 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1914 135 15 0 chrY 16991478 16991752 -34521832 - AluY SINE Alu -33 278 1 6085 215 16 11 chrY 16991752 16992425 -34521159 - L1PA14 LINE L1 -1482 4679 3992 2558 218 27 9 chrY 16992426 16992981 -34520603 - L1PA14 LINE L1 -2233 3913 3349 1451 275 42 31 chrY 16993022 16993738 -34519846 - L1MB4 LINE L1 -1115 5031 4308 1567 177 40 17 chrY 16993956 16994255 -34519329 + AluSx SINE Alu 6 311 -1 652 352 26 20 chrY 16994518 16994865 -34518719 + LTR40a LTR ERVL 68 416 -103 * 1282 171 7 96 chrY 16994862 16995154 -34518430 + MER4A LTR ERV1 399 664 0 1204 164 73 0 chrY 16995524 16995743 -34517841 - AluSg SINE Alu -75 235 1 892 286 30 8 chrY 16996371 16996605 -34516979 + MIR SINE MIR 23 261 -1 295 288 57 90 chrY 16996610 16996663 -34516921 + MIR SINE MIR 6 59 -203 1750 175 13 29 chrY 16996663 16996972 -34516612 + AluJb SINE Alu 2 305 -7 295 288 57 90 chrY 16996972 16997095 -34516489 + MIR SINE MIR 59 176 -86 1743 183 32 0 chrY 16997096 16997381 -34516203 + AluSx SINE Alu 1 294 -18 229 195 37 85 chrY 16997420 16997502 -34516082 + MIR SINE MIR 177 254 -8 557 282 167 0 chrY 16997524 16997688 -34515896 - MIR SINE MIR 0 262 52 2008 173 0 0 chrY 16997688 16997994 -34515590 - AluJo SINE Alu -1 311 6 557 282 167 0 chrY 16997994 16998045 -34515539 - MIR SINE MIR -210 52 11 7921 71 42 3 chrY 16998105 16999136 -34514448 - MER11C LTR ERVK 0 1071 1 225 297 174 47 chrY 17000352 17000588 -34512996 + L3 LINE CR1 587 852 -725 229 264 0 0 chrY 17000686 17000739 -34512845 + MIR SINE MIR 161 213 -49 805 145 33 17 chrY 17000742 17001080 -34512504 + (ATGGTG)n Simple_repeat Simple_repeat 1 343 0 890 107 23 23 chrY 17001131 17001308 -34512276 + (ATGGTG)n Simple_repeat Simple_repeat 1 177 0 258 245 0 0 chrY 17001344 17001393 -34512191 - MIR SINE MIR -211 51 3 1909 133 44 10 chrY 17001635 17001962 -34511622 + AluSq SINE Alu 1 313 0 782 179 7 14 chrY 17002005 17002145 -34511439 + AluJ SINE Alu 3 141 -171 290 276 71 10 chrY 17002227 17002325 -34511259 + L3 LINE CR1 1307 1410 -167 330 265 167 37 chrY 17002429 17002591 -34510993 + MER5A DNA MER1_type 7 189 0 8958 42 0 0 chrY 17003032 17004896 -34508688 - L1PA3 LINE L1 0 6155 4300 6774 50 0 0 chrY 17004921 17005779 -34507805 + L1P LINE L1 3422 4279 -1867 206 373 57 14 chrY 17006385 17006597 -34506987 + L2 LINE L2 1063 1283 -2031 987 198 5 27 chrY 17006808 17007030 -34506554 - AluJo SINE Alu 0 312 96 1214 205 33 43 chrY 17007168 17007471 -34506113 - AluJo SINE Alu -1 301 2 509 235 0 0 chrY 17007489 17007591 -34505993 + AluJ SINE Alu 132 233 -79 1735 163 7 17 chrY 17007690 17008021 -34505563 - AluSx SINE Alu 0 328 1 233 312 102 57 chrY 17008144 17008301 -34505283 - MIR3 SINE MIR -15 193 30 29 28 0 0 chrY 17008851 17008887 -34504697 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chrY 17009308 17009338 -34504246 + AT_rich Low_complexity Low_complexity 1 30 0 1128 171 16 16 chrY 17010180 17010431 -34503153 + L1M2 LINE L1 2536 2786 -4063 1514 138 23 0 chrY 17010443 17010661 -34502923 + AluSq SINE Alu 78 300 -13 1085 203 4 38 chrY 17010683 17010944 -34502640 + L1M2 LINE L1 3342 3593 -3255 195 162 0 0 chrY 17010958 17010995 -34502589 + T-rich Low_complexity Low_complexity 4 40 0 218 188 43 0 chrY 17011266 17011335 -34502249 + (TA)n Simple_repeat Simple_repeat 1 72 0 2020 141 0 0 chrY 17011335 17011612 -34501972 - AluSx SINE Alu -26 286 10 180 235 86 49 chrY 17011858 17011939 -34501645 - L2 LINE L2 -1477 1837 1754 1672 194 7 7 chrY 17011968 17012267 -34501317 + AluSx SINE Alu 1 299 -13 2203 109 0 53 chrY 17012267 17012587 -34500997 + AluY SINE Alu 1 303 -8 1871 166 0 3 chrY 17013448 17013771 -34499813 + AluSx SINE Alu 1 322 0 730 184 0 22 chrY 17013779 17013915 -34499669 + AluJo SINE Alu 1 133 -169 908 216 16 5 chrY 17013956 17014141 -34499443 + AluJo SINE Alu 118 304 -8 1916 168 3 0 chrY 17014141 17014439 -34499145 + AluSq SINE Alu 1 299 -14 1205 118 0 12 chrY 17014508 17014669 -34498915 + AluSx SINE Alu 2 160 -152 1598 108 5 5 chrY 17014690 17014904 -34498680 - AluSq SINE Alu -96 217 4 208 330 9 9 chrY 17016343 17016458 -34497126 + CT-rich Low_complexity Low_complexity 2 116 0 665 192 16 24 chrY 17016536 17016661 -34496923 + AluJb SINE Alu 164 287 -25 181 191 0 29 chrY 17016764 17016832 -34496752 + (TTA)n Simple_repeat Simple_repeat 1 66 0 514 227 0 0 chrY 17016840 17016928 -34496656 - FRAM SINE Alu -26 150 63 323 203 0 0 chrY 17017016 17017080 -34496504 + AluJ/FLAM SINE Alu 34 97 -205 840 255 60 17 chrY 17017080 17017206 -34496378 - AluJb SINE Alu -54 258 139 606 14 0 0 chrY 17017206 17017277 -34496307 + (TTTTA)n Simple_repeat Simple_repeat 3 73 0 840 255 60 17 chrY 17017277 17017385 -34496199 - AluJb SINE Alu -173 139 14 361 309 144 45 chrY 17017407 17017783 -34495801 - HAL1 LINE L1 -1204 1303 891 1492 172 82 0 chrY 17018202 17018469 -34495115 - AluSx SINE Alu -23 289 1 1485 203 30 0 chrY 17018735 17019006 -34494578 - AluSg SINE Alu -31 279 1 241 297 165 16 chrY 17019069 17019251 -34494333 - LTR54B LTR ERV1 -254 244 36 1165 184 137 23 chrY 17019581 17019837 -34493747 + AluJb SINE Alu 1 285 -17 23 68 0 0 chrY 17019911 17019955 -34493629 + AT_rich Low_complexity Low_complexity 1 44 0 802 171 7 7 chrY 17019972 17020112 -34493472 - AluJb SINE Alu -171 141 2 194 81 27 0 chrY 17020116 17020153 -34493431 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2093 135 0 3 chrY 17020916 17021212 -34492372 + AluSg SINE Alu 2 296 -14 1691 168 3 66 chrY 17021214 17021508 -34492076 + AluSp SINE Alu 1 273 -40 258 32 0 0 chrY 17021508 17021539 -34492045 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1691 168 3 66 chrY 17021539 17021577 -34492007 + AluSp SINE Alu 273 312 -1 403 175 0 0 chrY 17021640 17021703 -34491881 - AluS SINE Alu -255 63 1 23 0 0 0 chrY 17021727 17021750 -34491834 + AT_rich Low_complexity Low_complexity 1 23 0 1624 191 0 0 chrY 17021751 17022013 -34491571 - AluSx SINE Alu -16 296 35 3774 107 36 2 chrY 17022014 17022573 -34491011 + LTR14C LTR ERVK 10 587 0 273 125 0 0 chrY 17022573 17022613 -34490971 - AluSx SINE Alu -259 41 2 229 159 68 0 chrY 17022581 17022625 -34490959 - Alu SINE Alu -135 168 122 * 1066 204 132 4 chrY 17022645 17022910 -34490674 - ERVL LTR ERVL -2176 3588 3290 749 193 0 21 chrY 17023064 17023204 -34490380 - FRAM SINE Alu -23 153 17 327 190 0 0 chrY 17023264 17023322 -34490262 - Alu SINE Alu -2 299 242 1025 202 14 0 chrY 17023322 17023535 -34490049 - PABL_A LTR ERV1 0 660 445 1858 168 0 0 chrY 17023544 17023872 -34489712 - AluSx SINE Alu 0 330 3 391 335 85 52 chrY 17024911 17025229 -34488355 - HAL1 LINE L1 -1186 1321 986 2329 60 19 32 chrY 17025229 17025544 -34488040 - AluY SINE Alu 0 311 1 391 335 85 52 chrY 17025544 17025613 -34487971 - HAL1 LINE L1 -1521 986 921 220 214 0 24 chrY 17025619 17025703 -34487881 + CT-rich Low_complexity Low_complexity 2 83 0 338 115 0 115 chrY 17027958 17028036 -34485548 - AluSc SINE Alu -95 204 136 1047 197 43 3 chrY 17028273 17029513 -34484071 + GSATX Satellite centromeric 1 1288 -2 1015 178 35 32 chrY 17029528 17030491 -34483093 + GSATX Satellite centromeric 1 966 -21 1038 183 48 13 chrY 17030505 17032011 -34481573 + GSATX Satellite centromeric 1 1558 -5 1063 189 46 2 chrY 17032023 17033208 -34480376 + GSATX Satellite centromeric 1 1236 -5 1070 162 68 3 chrY 17033223 17035145 -34478439 - GSATX Satellite centromeric -21 2046 1 655 144 34 8 chrY 17035662 17035780 -34477804 - 5S rRNA rRNA 0 121 1 217 310 0 0 chrY 17036500 17036587 -34476997 + (CA)n Simple_repeat Simple_repeat 2 88 0 356 238 0 7 chrY 17036602 17036745 -34476839 + GA-rich Low_complexity Low_complexity 2 143 0 712 157 52 0 chrY 17037575 17037690 -34475894 - 5S rRNA rRNA 0 121 1 13450 205 36 41 chrY 17038080 17038174 -34475410 - L1M1 LINE L1 -4311 3254 3161 2386 93 0 0 chrY 17038174 17038484 -34475100 - AluY SINE Alu -1 310 1 13450 205 36 41 chrY 17038484 17041634 -34471950 - L1M1 LINE L1 -4404 3161 26 2401 183 76 9 chrY 17041652 17042194 -34471390 - LTR49-int LTR ERV1 -1975 5562 4985 29 0 0 0 chrY 17042230 17042259 -34471325 + AT_rich Low_complexity Low_complexity 1 29 0 1851 144 0 0 chrY 17042441 17042730 -34470854 + AluSx SINE Alu 18 306 0 392 205 69 100 chrY 17042792 17043110 -34470474 - LTR49-int LTR ERV1 -2970 1966 1712 353 217 0 0 chrY 17043218 17043287 -34470297 - LTR49-int LTR ERV1 -2891 3440 3372 373 234 0 11 chrY 17043365 17043459 -34470125 - LTR49-int LTR ERV1 -2991 3340 3248 1677 105 0 16 chrY 17043605 17043853 -34469731 - L1PA14 LINE L1 -6 6155 5912 231 97 0 0 chrY 17043855 17043886 -34469698 - L1PA14 LINE L1 -343 5812 5782 2341 151 7 30 chrY 17043886 17044099 -34469485 - LTR66 LTR ERVL 0 610 410 384 22 0 0 chrY 17044099 17044144 -34469440 + (CA)n Simple_repeat Simple_repeat 2 46 0 2341 151 7 30 chrY 17044144 17044360 -34469224 - LTR66 LTR ERVL -200 410 191 973 125 0 0 chrY 17044377 17044513 -34469071 + AluSx SINE Alu 18 153 -159 914 95 177 0 chrY 17044515 17044673 -34468911 - LTR66 LTR ERVL -422 188 3 2632 150 23 4 chrY 17044679 17045159 -34468425 - L1PA14 LINE L1 -376 5785 5297 * 4759 138 9 5 chrY 17045148 17045957 -34467627 - L1PB1 LINE L1 -1 6150 5339 2913 228 35 2 chrY 17045944 17046734 -34466850 + L1PB1 LINE L1 4533 5348 -798 * 9296 211 16 19 chrY 17046735 17049056 -34464528 - L1PB1 LINE L1 -816 5330 3016 223 250 0 0 chrY 17050031 17050083 -34463501 + (CA)n Simple_repeat Simple_repeat 2 53 0 276 263 0 0 chrY 17050089 17050169 -34463415 + MER103 DNA DNA 12 91 -75 208 258 11 22 chrY 17050231 17050320 -34463264 + L2 LINE L2 1996 2083 -1231 196 296 245 0 chrY 17050525 17050623 -34462961 + L2 LINE L2 3181 3302 -11 2100 225 21 2 chrY 17051459 17051974 -34461610 - L1PB4 LINE L1 -12 6144 5620 306 206 68 14 chrY 17052237 17052310 -34461274 + L2 LINE L2 3191 3267 -5 187 289 0 0 chrY 17052992 17053037 -34460547 + L2 LINE L2 3261 3305 -8 243 296 169 0 chrY 17053159 17053230 -34460354 + L2 LINE L2 3190 3272 0 5110 23 2 3 chrY 17053971 17054593 -34458991 - L1PA2 LINE L1 0 6155 5558 6538 31 0 0 chrY 17054594 17055583 -34458001 + L1PA2 LINE L1 4563 5551 -604 32 57 0 0 chrY 17055880 17055933 -34457651 + AT_rich Low_complexity Low_complexity 1 53 0 476 280 223 5 chrY 17055933 17056309 -34457275 - MLT1H1 LTR MaLR -61 506 47 361 176 0 0 chrY 17056967 17057035 -34456549 - L1PA16 LINE L1 -795 5371 5304 3045 186 67 13 chrY 17057039 17057756 -34455828 + L1PA16 LINE L1 5390 6145 -21 13286 223 63 19 chrY 17057762 17062761 -34450823 + L1MA2 LINE L1 18 4797 -2768 1915 168 10 0 chrY 17062761 17063070 -34450514 + AluSx SINE Alu 1 312 0 13286 223 63 19 chrY 17063070 17063447 -34450137 + L1MA2 LINE L1 4797 5156 -2409 1764 234 29 12 chrY 17063447 17063866 -34449718 + MSTA LTR MaLR 1 426 -2 6688 224 32 17 chrY 17063868 17065494 -34448090 + MSTA-int LTR MaLR 1 1651 0 1625 223 69 10 chrY 17065494 17065898 -34447686 + MSTA LTR MaLR 1 428 0 13286 223 63 19 chrY 17065898 17066891 -34446693 + L1MA2 LINE L1 5155 6669 -896 1412 146 111 56 chrY 17066906 17067227 -34446357 + THE1C LTR MaLR 1 361 -67 1910 133 4 0 chrY 17067227 17067505 -34446079 + AluSg1 SINE Alu 3 281 -28 1412 146 111 56 chrY 17067505 17067577 -34446007 + THE1C LTR MaLR 361 428 0 1141 172 4 0 chrY 17067583 17067816 -34445768 + L1MA2 LINE L1 6688 6921 -803 3211 148 14 3 chrY 17067817 17068393 -34445191 + L1MA2 LINE L1 7137 7718 -5 21 36 0 0 chrY 17068393 17068421 -34445163 + AT_rich Low_complexity Low_complexity 1 28 0 606 191 103 0 chrY 17068423 17068559 -34445025 - MER4B LTR ERV1 -460 150 1 1778 179 3 0 chrY 17068874 17069159 -34444425 + AluSx SINE Alu 1 286 -26 27 0 0 0 chrY 17069166 17069193 -34444391 + AT_rich Low_complexity Low_complexity 1 27 0 578 318 6 0 chrY 17069798 17069971 -34443613 + MER41D LTR ERV1 384 557 0 7418 327 32 25 chrY 17071312 17074146 -34439438 + MER89-int LTR ERV1 1658 4531 -3225 2319 133 5 37 chrY 17074146 17074355 -34439229 - THE1B LTR MaLR 0 364 168 1809 158 4 0 chrY 17074355 17074657 -34438927 + AluSx SINE Alu 23 325 0 2319 133 5 37 chrY 17074657 17074820 -34438764 - THE1B LTR MaLR -196 168 1 7418 327 32 25 chrY 17074820 17075778 -34437806 + MER89-int LTR ERV1 4531 5480 -2276 316 280 68 16 chrY 17075787 17075956 -34437628 + MER89-int LTR ERV1 5560 5806 -2451 807 318 19 3 chrY 17076006 17076383 -34437201 + MER89-int LTR ERV1 5781 6163 -1593 308 310 82 82 chrY 17076536 17076781 -34436803 - L1M2 LINE L1 -5769 1080 836 610 189 70 0 chrY 17082843 17082986 -34430598 - L1MB3 LINE L1 -11 6172 6020 362 270 135 25 chrY 17083004 17083204 -34430380 + L1M4 LINE L1 5128 5349 -797 5285 245 71 24 chrY 17083279 17085274 -34428310 - L1MB3 LINE L1 -75 6108 3923 342 0 0 0 chrY 17085274 17085312 -34428272 + (TG)n Simple_repeat Simple_repeat 1 38 0 5285 245 71 24 chrY 17085312 17086398 -34427186 - L1MB3 LINE L1 -2260 3923 2889 294 307 39 31 chrY 17087497 17087624 -34425960 - MIR SINE MIR -124 138 11 2168 148 27 3 chrY 17087993 17088358 -34425226 - Charlie3 DNA MER1_type -4 2706 2333 182 300 43 14 chrY 17088602 17088672 -34424912 + L2 LINE L2 2283 2354 -960 1313 309 60 11 chrY 17088693 17088746 -34424838 + MLT1F1 LTR MaLR 1 50 -517 5470 187 27 48 chrY 17088746 17090073 -34423511 + HSMAR2 DNA Mariner 2 1301 -1 1313 309 60 11 chrY 17090073 17090553 -34423031 + MLT1F1 LTR MaLR 50 560 -7 1455 201 43 7 chrY 17090589 17090892 -34422692 - Tigger3(Golem) DNA MER2_type -1 3028 2715 603 278 92 48 chrY 17090920 17091215 -34422369 + MER89-int LTR ERV1 6 313 -6488 1024 280 31 53 chrY 17091895 17092385 -34421199 + MER89-int LTR ERV1 1008 1486 -5315 465 228 139 72 chrY 17093143 17093441 -34420143 - MLT1E LTR MaLR -6 621 323 349 293 66 54 chrY 17093627 17093666 -34419918 + MLT1A1 LTR MaLR 104 141 -224 219 36 0 0 chrY 17093666 17093694 -34419890 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 349 293 66 54 chrY 17093694 17093913 -34419671 + MLT1A1 LTR MaLR 141 365 0 182 358 88 0 chrY 17094283 17094431 -34419153 - MIR SINE MIR -54 208 48 1221 193 8 51 chrY 17095049 17095303 -34418281 - AluJo SINE Alu -14 298 56 2378 87 7 3 chrY 17095910 17096220 -34417364 + AluY SINE Alu 1 311 0 2142 148 0 0 chrY 17096986 17097297 -34416287 + AluY SINE Alu 1 334 0 187 43 0 0 chrY 17097297 17097320 -34416264 + (GAAAA)n Simple_repeat Simple_repeat 3 180 0 9154 148 8 9 chrY 17097604 17097863 -34415721 - L1PA7 LINE L1 -5 6464 6206 2011 150 0 3 chrY 17097863 17098177 -34415407 - AluSp SINE Alu 0 313 1 9154 148 8 9 chrY 17098177 17100295 -34413289 - L1PA7 LINE L1 -263 6206 4099 3805 248 75 41 chrY 17100307 17102104 -34411480 - L1PA7 LINE L1 -4636 1815 10 21 0 0 0 chrY 17102141 17102162 -34411422 + AT_rich Low_complexity Low_complexity 1 21 0 195 69 0 0 chrY 17102587 17102616 -34410968 + (T)n Simple_repeat Simple_repeat 1 29 0 2006 150 0 0 chrY 17103052 17103346 -34410238 + AluSg SINE Alu 1 294 -16 303 96 0 0 chrY 17103469 17103521 -34410063 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1384 233 3 0 chrY 17103616 17103903 -34409681 - AluJo SINE Alu -24 288 1 21 0 0 0 chrY 17104604 17104625 -34408959 + AT_rich Low_complexity Low_complexity 1 21 0 5788 127 22 34 chrY 17105250 17106375 -34407209 - L1MA1 LINE L1 0 6302 5191 2014 185 0 0 chrY 17106421 17106783 -34406801 - L1PB1 LINE L1 -8 6143 5782 310 231 33 44 chrY 17106794 17106885 -34406699 - L1MC4 LINE L1 -1339 6703 6614 391 188 43 0 chrY 17106911 17107028 -34406556 + (CA)n Simple_repeat Simple_repeat 2 123 0 2760 185 43 24 chrY 17107028 17108296 -34405288 - L1P5 LINE L1 -369 5782 4477 998 168 23 0 chrY 17108313 17108486 -34405098 - AluSp SINE Alu -2 311 135 4336 217 47 29 chrY 17108494 17109754 -34403830 - L1MA1 LINE L1 -1662 4484 3202 3098 95 42 8 chrY 17109759 17110182 -34403402 + LTR15 LTR ERV1 5 447 -46 410 0 0 20 chrY 17110182 17110233 -34403351 + (TAA)n Simple_repeat Simple_repeat 2 51 0 3098 95 42 8 chrY 17110233 17110282 -34403302 + LTR15 LTR ERV1 447 493 0 31984 135 10 11 chrY 17110282 17115458 -34398126 + HERV15 LTR ERV1 1 5175 -3560 180 0 0 0 chrY 17115458 17115478 -34398106 + (TA)n Simple_repeat Simple_repeat 2 21 0 31984 135 10 11 chrY 17115478 17115527 -34398057 + HERV15 LTR ERV1 5175 5223 -3512 14925 110 10 5 chrY 17115517 17117769 -34395815 + HERV15 LTR ERV1 6388 8650 -85 * 1995 290 20 40 chrY 17117766 17118638 -34394946 + LTR25-int LTR ERV1 1536 2416 -4580 * 1400 211 0 0 chrY 17118734 17119014 -34394570 + HERVK3 LTR ERVK 2909 3188 -4055 4486 272 13 2 chrY 17119022 17120248 -34393336 + HERVK3 LTR ERVK 6003 7241 -2 2242 177 5 21 chrY 17120251 17120687 -34392897 + LTR3 LTR ERVK 1 429 0 851 230 5 0 chrY 17120713 17120904 -34392680 + AluSg/x SINE Alu 119 310 0 295 178 65 2 chrY 17121016 17121105 -34392479 + L1MC3 LINE L1 5296 5388 -956 1336 224 7 7 chrY 17121457 17121772 -34391812 + AluSx SINE Alu 1 315 0 1227 259 64 47 chrY 17122566 17123188 -34390396 + L1MC3 LINE L1 5386 6018 -1767 470 180 54 9 chrY 17123384 17123495 -34390089 - L1MB3 LINE L1 0 6183 6068 397 216 99 9 chrY 17123499 17123610 -34389974 - L1MB3 LINE L1 -625 5549 5429 447 286 23 0 chrY 17123620 17123795 -34389789 + L1M4 LINE L1 5067 5245 -901 954 188 37 9 chrY 17123803 17124021 -34389563 + MER50 LTR ERV1 511 734 0 2247 234 68 20 chrY 17124168 17124883 -34388701 - L1MB5 LINE L1 -10 6164 5415 434 257 0 18 chrY 17125959 17126190 -34387394 + (CCCTAA)n Simple_repeat Simple_repeat 1 226 0 321 197 0 90 chrY 17126219 17126397 -34387187 + (CCCTAA)n Simple_repeat Simple_repeat 5 166 0 325 218 5 25 chrY 17126415 17126627 -34386957 + (CCCTAA)n Simple_repeat Simple_repeat 1 207 0 233 269 5 11 chrY 17126655 17126841 -34386743 + (CCCTAA)n Simple_repeat Simple_repeat 1 185 0 208 154 0 55 chrY 17126917 17127008 -34386576 + (CCCTAA)n Simple_repeat Simple_repeat 5 90 0 236 176 15 44 chrY 17127035 17127103 -34386481 + (CCCTAA)n Simple_repeat Simple_repeat 4 69 0 331 239 6 43 chrY 17127160 17127323 -34386261 + (CCCTAA)n Simple_repeat Simple_repeat 2 158 0 265 194 0 44 chrY 17127342 17127522 -34386062 + (CCCTAA)n Simple_repeat Simple_repeat 4 175 0 201 259 20 48 chrY 17127540 17127687 -34385897 + (CCCTAA)n Simple_repeat Simple_repeat 2 144 0 293 159 0 14 chrY 17127716 17127785 -34385799 + (CCCTAA)n Simple_repeat Simple_repeat 5 72 0 257 218 0 29 chrY 17127882 17128052 -34385532 + (CCCTAA)n Simple_repeat Simple_repeat 5 169 0 618 262 115 0 chrY 17129547 17129730 -34383854 + MER3 DNA MER1_type 2 205 -4 1261 206 0 0 chrY 17129831 17130064 -34383520 + AluSx SINE Alu 32 264 -48 672 48 0 0 chrY 17130118 17130202 -34383382 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 2535 138 30 45 chrY 17130250 17130743 -34382841 - LTR22B LTR ERVK -2 490 5 959 223 169 16 chrY 17131308 17131680 -34381904 + L1M4 LINE L1 4775 5203 -943 458 191 211 26 chrY 17131684 17131836 -34381748 + L1MC3 LINE L1 6093 6272 -1513 309 310 85 55 chrY 17132352 17132623 -34380961 - L1MC/D LINE L1 -2493 5549 5271 414 153 133 51 chrY 17132841 17132939 -34380645 + FLAM_C SINE Alu 15 120 -23 264 59 0 0 chrY 17132939 17132973 -34380611 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 333 268 68 63 chrY 17133004 17133194 -34380390 - L1MC4 LINE L1 -12 8030 7840 442 323 90 52 chrY 17135307 17135617 -34377967 + L2 LINE L2 2946 3267 -5 1172 275 25 11 chrY 17135818 17136102 -34377482 + AluJb SINE Alu 1 288 -14 1731 187 10 0 chrY 17136247 17136546 -34377038 - AluSq SINE Alu -11 302 1 1834 184 10 0 chrY 17136675 17136968 -34376616 - AluSg1 SINE Alu -13 296 1 280 308 164 6 chrY 17137481 17137640 -34375944 - L3 LINE CR1 -1195 382 199 186 71 0 0 chrY 17138278 17138306 -34375278 + (T)n Simple_repeat Simple_repeat 1 28 0 543 230 0 0 chrY 17138336 17138436 -34375148 - FLAM_A SINE Alu -21 121 22 1692 176 28 0 chrY 17138581 17138865 -34374719 - AluSq SINE Alu -21 292 1 22 35 0 0 chrY 17140172 17140201 -34373383 + AT_rich Low_complexity Low_complexity 1 29 0 194 289 289 0 chrY 17142669 17142797 -34370787 + MIR SINE MIR 82 246 -16 1266 243 3 23 chrY 17143110 17143294 -34370290 - AluSx SINE Alu -6 306 129 1575 219 3 0 chrY 17143294 17143605 -34369979 - AluSx SINE Alu 0 312 1 1266 243 3 23 chrY 17143605 17143729 -34369855 - AluSx SINE Alu -183 129 4 1087 204 5 9 chrY 17144215 17144431 -34369153 - AluSc SINE Alu -94 215 1 604 248 97 21 chrY 17145049 17145565 -34368019 - L1MC/D LINE L1 -748 5398 5017 5009 210 28 6 chrY 17145626 17146029 -34367555 + L1PA7 LINE L1 5 398 -6063 207 0 0 0 chrY 17146029 17146052 -34367532 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5009 210 28 6 chrY 17146052 17146743 -34366841 + L1PA7 LINE L1 398 1123 -5338 * 12418 138 18 9 chrY 17146731 17150207 -34363377 + L1PA7 LINE L1 2882 6376 -93 652 38 0 0 chrY 17150205 17150285 -34363299 - L1P LINE L1 -732 5422 5343 * 4565 168 11 1 chrY 17150284 17151089 -34362495 + L1PA14 LINE L1 5336 6148 -13 21 0 0 0 chrY 17153513 17153534 -34360050 + AT_rich Low_complexity Low_complexity 1 21 0 1963 273 96 4 chrY 17153919 17154825 -34358759 - L1M4 LINE L1 -753 5393 4405 583 303 28 0 chrY 17154834 17155012 -34358572 - AluJo SINE Alu -11 301 119 596 81 11 0 chrY 17155303 17155390 -34358194 + (TC)n Simple_repeat Simple_repeat 1 88 0 548 279 94 23 chrY 17155390 17155655 -34357929 - AluJb SINE Alu -10 302 19 22 70 0 0 chrY 17156139 17156182 -34357402 + AT_rich Low_complexity Low_complexity 1 43 0 388 275 15 18 chrY 17156716 17156783 -34356801 - L1M4 LINE L1 -1760 4386 4320 1723 173 17 0 chrY 17156783 17157078 -34356506 + AluSp SINE Alu 1 300 -13 388 275 15 18 chrY 17157078 17157203 -34356381 - L1M4 LINE L1 -1826 4320 4182 332 211 6 33 chrY 17157938 17158118 -34355466 + (TTAGGG)n Simple_repeat Simple_repeat 1 175 0 649 154 66 22 chrY 17258127 17258263 -34255321 - THE1C LTR MaLR -233 142 1 180 0 0 0 chrY 17259660 17259680 -34253904 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 185 331 60 38 chrY 17259750 17259883 -34253701 + MIR SINE MIR 79 214 -48 27 29 0 0 chrY 17260639 17260673 -34252911 + AT_rich Low_complexity Low_complexity 1 34 0 208 150 25 0 chrY 17261896 17261936 -34251648 + L2 LINE L2 1883 1923 -1391 2120 111 13 22 chrY 17261942 17262345 -34251239 - AluSq SINE Alu 0 400 1 714 194 0 0 chrY 17263017 17263146 -34250438 - HUERS-P3b LTR ERV1 -317 7101 6973 * 9792 153 40 24 chrY 17263143 17265115 -34248469 - HUERS-P3b LTR ERV1 -724 6694 4691 2207 194 50 8 chrY 17265107 17265642 -34247942 - HUERS-P3b LTR ERV1 -2925 4493 3936 * 2913 172 64 69 chrY 17265638 17266130 -34247454 - HUERS-P3b LTR ERV1 -3624 3794 3306 2317 103 0 10 chrY 17266130 17266440 -34247144 - AluY SINE Alu -4 307 1 2913 172 64 69 chrY 17266440 17266684 -34246900 - HUERS-P3b LTR ERV1 -4112 3306 3062 1793 234 31 5 chrY 17266684 17267103 -34246481 + LTR8 LTR ERV1 12 441 -250 5986 154 16 10 chrY 17267103 17268200 -34245384 - HUERS-P3b LTR ERV1 -4776 2642 1539 1729 178 0 0 chrY 17268200 17268481 -34245103 + AluSg SINE Alu 1 281 -29 390 171 0 0 chrY 17268490 17268509 -34245075 + (TA)n Simple_repeat Simple_repeat 2 20 -63 302 0 26 0 chrY 17268509 17268547 -34245037 + (TG)n Simple_repeat Simple_repeat 2 40 0 390 171 0 0 chrY 17268547 17268609 -34244975 + (TA)n Simple_repeat Simple_repeat 19 83 0 2862 236 19 46 chrY 17268609 17269414 -34244170 - HUERS-P3b LTR ERV1 -5872 1546 764 758 240 21 46 chrY 17269462 17269890 -34243694 - HUERS-P3b LTR ERV1 -6914 504 1 3171 176 16 19 chrY 17269890 17270533 -34243051 - LTR9B LTR ERV1 0 644 4 1480 200 7 23 chrY 17270696 17270996 -34242588 + AluJo SINE Alu 1 295 -17 192 216 0 59 chrY 17271735 17271786 -34241798 - L3b LINE CR1 -250 1333 1286 1332 172 65 26 chrY 17271942 17272250 -34241334 - MER33 DNA MER1_type 0 324 5 400 295 68 42 chrY 17272742 17272979 -34240605 - L1MC4 LINE L1 -1 8041 7799 4055 111 0 30 chrY 17273214 17273816 -34239768 + LTR14C LTR ERVK 1 584 -3 9417 132 27 1 chrY 17273818 17275350 -34238234 + HERVK14C LTR ERVK 3 1573 -5844 * 11504 103 30 2 chrY 17275335 17277070 -34236514 + HERVK14C LTR ERVK 5635 7417 0 4212 112 2 2 chrY 17277070 17277657 -34235927 + LTR14C LTR ERVK 1 587 0 21 36 0 0 chrY 17277902 17277930 -34235654 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 17278571 17278594 -34234990 + AT_rich Low_complexity Low_complexity 1 23 0 3196 175 19 28 chrY 17279528 17280215 -34233369 - HUERS-P3b LTR ERV1 -2047 5371 4691 2030 209 57 6 chrY 17280207 17280738 -34232846 - HUERS-P3b LTR ERV1 -2925 4493 3936 * 3178 164 58 50 chrY 17280734 17281461 -34232123 - HUERS-P3b LTR ERV1 -3624 3794 3062 1674 254 31 2 chrY 17281461 17281875 -34231709 + LTR8 LTR ERV1 12 437 -254 3979 148 14 8 chrY 17281875 17282578 -34231006 - HUERS-P3b LTR ERV1 -4773 2645 1939 180 301 53 80 chrY 17282578 17282691 -34230893 - L2 LINE L2 -2531 783 674 1525 153 18 3 chrY 17282691 17282973 -34230611 - HUERS-P3b LTR ERV1 -5595 1823 1538 1601 203 0 0 chrY 17282974 17283250 -34230334 + AluSg SINE Alu 1 276 -34 324 0 0 0 chrY 17283251 17283287 -34230297 + (CA)n Simple_repeat Simple_repeat 1 36 0 300 259 0 0 chrY 17283289 17283397 -34230187 + (TA)n Simple_repeat Simple_repeat 2 109 0 2923 229 23 39 chrY 17283397 17284193 -34229391 - HUERS-P3b LTR ERV1 -5872 1546 764 720 261 20 45 chrY 17284239 17284670 -34228914 - HUERS-P3b LTR ERV1 -6912 506 1 3211 170 57 5 chrY 17284670 17285281 -34228303 - LTR9B LTR ERV1 0 644 2 1367 222 14 24 chrY 17285432 17285725 -34227859 + AluJo SINE Alu 1 290 -22 739 205 74 64 chrY 17286704 17287001 -34226583 - MER33 DNA MER1_type 0 324 25 579 214 58 62 chrY 17287018 17287261 -34226323 - MER33 DNA MER1_type -78 246 5 759 148 0 28 chrY 17287347 17287489 -34226095 + LTR14C LTR ERVK 450 587 0 23 0 0 0 chrY 17288395 17288418 -34225166 + AT_rich Low_complexity Low_complexity 1 23 0 347 384 59 33 chrY 17289342 17289649 -34223935 + L2 LINE L2 2944 3258 -14 1053 269 33 0 chrY 17289859 17290130 -34223454 + AluJb SINE Alu 1 280 -32 1370 204 59 3 chrY 17290329 17290618 -34222966 - AluSq SINE Alu -8 305 1 247 340 113 11 chrY 17291210 17291395 -34222189 - L3 LINE CR1 -1180 397 194 672 224 0 15 chrY 17291989 17292123 -34221461 - FLAM_A SINE Alu -1 132 1 201 288 34 0 chrY 17293340 17293399 -34220185 + L2 LINE L2 3250 3310 -3 22 35 0 0 chrY 17294973 17295002 -34218582 + AT_rich Low_complexity Low_complexity 1 29 0 1279 219 3 71 chrY 17295095 17295291 -34218293 - AluSx SINE Alu -9 303 136 1554 218 0 11 chrY 17295291 17295576 -34218008 - AluSx SINE Alu -30 282 1 1279 219 3 71 chrY 17295576 17295704 -34217880 - AluSx SINE Alu -176 136 1 21 36 0 0 chrY 17296885 17296913 -34216671 + AT_rich Low_complexity Low_complexity 1 28 0 440 277 75 55 chrY 17298183 17298419 -34215165 + MIR SINE MIR 6 256 -6 472 218 21 128 chrY 17299062 17299181 -34214403 - MER46C DNA MER2_type -117 221 140 2133 138 0 3 chrY 17299181 17299493 -34214091 - AluY SINE Alu 0 311 1 472 218 21 128 chrY 17299493 17299616 -34213968 - MER46C DNA MER2_type -198 140 5 1631 202 0 16 chrY 17301405 17301712 -34211872 - AluSx SINE Alu -8 304 3 1401 167 57 144 chrY 17301962 17302538 -34211046 + LTR61 LTR ERV1 70 595 0 1544 245 5 16 chrY 17302547 17302935 -34210649 + HERV3 LTR ERV1 10 393 -8033 * 17302 263 28 27 chrY 17302934 17307732 -34205852 + HERV3 LTR ERV1 299 5099 -3327 3784 103 32 38 chrY 17307733 17308778 -34204806 - MER11A LTR ERVK 0 1266 1 4184 277 50 13 chrY 17308778 17309947 -34203637 + HERV3 LTR ERV1 5095 6306 -2120 515 233 8 15 chrY 17310045 17310178 -34203406 + HERV3 LTR ERV1 8287 8418 -8 1706 200 66 47 chrY 17310188 17310702 -34202882 + LTR61 LTR ERV1 72 595 0 1693 176 32 0 chrY 17310721 17311005 -34202579 - AluSg SINE Alu -17 293 1 201 324 176 18 chrY 17311955 17312125 -34201459 + MIR3 SINE MIR 8 204 -4 216 306 61 10 chrY 17313700 17313798 -34199786 - L2 LINE L2 -7 3306 3204 219 36 0 0 chrY 17315356 17315384 -34198200 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 975 208 67 104 chrY 17318355 17318730 -34194854 + MLT1A1 LTR MaLR 3 363 -2 192 77 0 0 chrY 17320182 17320208 -34193376 + (A)n Simple_repeat Simple_repeat 1 26 0 256 167 9 185 chrY 17323028 17323255 -34190329 - MER53 DNA DNA -1 188 2 413 321 14 37 chrY 17324635 17324850 -34188734 + L1MDa LINE L1 118 327 -6213 44315 179 25 8 chrY 17324910 17333033 -34180551 + HERV3 LTR ERV1 165 8426 0 2598 193 43 17 chrY 17333080 17333620 -34179964 + LTR4 LTR ERV1 43 596 0 1644 181 7 13 chrY 17334243 17334547 -34179037 + AluSc SINE Alu 1 302 -7 250 44 22 22 chrY 17336078 17336123 -34177461 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1636 175 3 3 chrY 17338286 17338571 -34175013 - AluY SINE Alu 0 311 27 1402 109 0 0 chrY 17339184 17339376 -34174208 - AluY SINE Alu -119 192 1 246 272 0 33 chrY 17340387 17340479 -34173105 - MIR SINE MIR -49 213 125 1471 186 148 5 chrY 17340640 17341017 -34172567 + MER9 LTR ERVK 81 511 0 678 223 11 17 chrY 17341017 17341192 -34172392 + HERVK9 LTR ERVK 1 174 -5742 * 10723 176 37 49 chrY 17341190 17343802 -34169782 + HERVK9 LTR ERVK 3321 5900 -16 2344 161 82 11 chrY 17343819 17344296 -34169288 + MER9 LTR ERVK 1 511 0 620 285 23 54 chrY 17344476 17344827 -34168757 + L1MDa LINE L1 56 395 -6145 30 0 0 0 chrY 17344827 17344857 -34168727 + AT_rich Low_complexity Low_complexity 1 30 0 2133 122 6 31 chrY 17344994 17345315 -34168269 - AluSp SINE Alu 0 313 1 1140 267 72 50 chrY 17345622 17346436 -34167148 + L1M4 LINE L1 4373 5204 -942 1266 151 79 118 chrY 17346440 17346682 -34166902 + MER52C LTR ERV1 890 1111 -167 2840 187 28 5 chrY 17346682 17347249 -34166335 - LTR22 LTR ERVK 0 580 1 1266 151 79 118 chrY 17347249 17347411 -34166173 + MER52C LTR ERV1 1111 1278 0 1125 290 91 33 chrY 17347434 17348212 -34165372 - L1MDa LINE L1 -5469 1071 35 898 156 23 40 chrY 17348786 17348959 -34164625 - AluSg/x SINE Alu -23 289 120 297 0 0 0 chrY 17349743 17349776 -34163808 + (TG)n Simple_repeat Simple_repeat 2 34 0 1368 226 21 0 chrY 17350228 17350515 -34163069 + AluSx SINE Alu 11 303 -9 195 114 0 0 chrY 17350865 17350900 -34162684 + (TG)n Simple_repeat Simple_repeat 2 36 0 1019 254 63 29 chrY 17351016 17351394 -34162190 + MSTD LTR MaLR 1 391 -5 214 186 0 0 chrY 17353789 17353832 -34159752 + A-rich Low_complexity Low_complexity 2 44 0 596 271 85 10 chrY 17353912 17354111 -34159473 + L1MB5 LINE L1 5949 6162 -12 29 0 0 0 chrY 17354332 17354361 -34159223 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chrY 17354903 17354949 -34158635 + AT_rich Low_complexity Low_complexity 1 46 0 307 235 88 29 chrY 17355285 17355387 -34158197 + MER67C LTR ERV1 487 594 -116 564 234 10 94 chrY 17355389 17355590 -34157994 - AluJo SINE Alu -117 195 12 459 294 10 5 chrY 17355599 17355725 -34157859 - FLAM_C SINE Alu -10 123 13 30 69 0 0 chrY 17357381 17357439 -34156145 + AT_rich Low_complexity Low_complexity 1 58 0 643 286 39 0 chrY 17357536 17357718 -34155866 + MER2 DNA MER2_type 7 195 -150 991 184 0 88 chrY 17358081 17358309 -34155275 - AluSq SINE Alu -24 289 82 22 35 0 0 chrY 17359208 17359237 -34154347 + AT_rich Low_complexity Low_complexity 1 29 0 2232 243 8 2 chrY 17359354 17359836 -34153748 + MER1A DNA MER1_type 28 512 -17 2517 17 0 0 chrY 17360007 17360294 -34153290 - L1PA3 LINE L1 -511 5644 5358 4046 36 0 22 chrY 17360294 17360799 -34152785 + L1PA3 LINE L1 5661 6155 0 320 88 18 0 chrY 17361362 17361419 -34152165 + (TG)n Simple_repeat Simple_repeat 1 58 0 451 358 5 14 chrY 17361468 17361675 -34151909 - AluJb SINE Alu -107 205 1 259 164 30 15 chrY 17361768 17361835 -34151749 + (TA)n Simple_repeat Simple_repeat 2 69 0 354 290 0 20 chrY 17362075 17362175 -34151409 - AluJb SINE Alu -121 181 84 28 48 0 0 chrY 17362508 17362550 -34151034 + AT_rich Low_complexity Low_complexity 1 42 0 1108 305 8 37 chrY 17362605 17363034 -34150550 - MER52A LTR ERV1 -462 1293 923 1494 146 8 0 chrY 17363122 17363362 -34150222 + AluSp SINE Alu 66 307 -6 236 145 0 16 chrY 17363375 17363437 -34150147 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 372 239 18 31 chrY 17363544 17363707 -34149877 + (CCCTAA)n Simple_repeat Simple_repeat 1 161 0 189 214 0 27 chrY 17363723 17363835 -34149749 + (CCCTAA)n Simple_repeat Simple_repeat 6 114 0 257 230 0 46 chrY 17363850 17364142 -34149442 + (CCCTAA)n Simple_repeat Simple_repeat 1 278 0 310 242 33 33 chrY 17364202 17364355 -34149229 + (CCCTAA)n Simple_repeat Simple_repeat 5 157 0 181 202 0 34 chrY 17364424 17364513 -34149071 + (CCCTAA)n Simple_repeat Simple_repeat 5 90 0 194 214 0 14 chrY 17364602 17364672 -34148912 + (CCCTAA)n Simple_repeat Simple_repeat 4 72 0 305 178 12 37 chrY 17364844 17365007 -34148577 + (CCCTAA)n Simple_repeat Simple_repeat 6 164 0 313 282 0 23 chrY 17365132 17365306 -34148278 + (CCCTAA)n Simple_repeat Simple_repeat 5 174 0 475 212 11 58 chrY 17365393 17365582 -34148002 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 310 140 17 56 chrY 17365642 17365821 -34147763 + (CCCTAA)n Simple_repeat Simple_repeat 3 174 0 446 224 0 43 chrY 17365832 17365993 -34147591 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 248 215 23 23 chrY 17366010 17366182 -34147402 + (CCCTAA)n Simple_repeat Simple_repeat 2 173 0 21 0 0 0 chrY 17366308 17366329 -34147255 + AT_rich Low_complexity Low_complexity 1 21 0 256 332 65 16 chrY 17366477 17366554 -34147030 + L1M4 LINE L1 3732 3804 -2342 261 0 0 0 chrY 17366554 17366583 -34147001 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 256 332 65 16 chrY 17366583 17366899 -34146685 + L1M4 LINE L1 3804 4148 -1998 199 109 0 43 chrY 17366901 17366947 -34146637 + (TA)n Simple_repeat Simple_repeat 2 45 0 333 272 0 22 chrY 17366949 17367041 -34146543 - L1MC4 LINE L1 -1339 6703 6614 343 309 44 0 chrY 17367142 17367346 -34146238 + L1M4 LINE L1 4187 4399 -1747 25 31 0 0 chrY 17367875 17367907 -34145677 + AT_rich Low_complexity Low_complexity 1 32 0 2071 87 59 0 chrY 17368171 17368457 -34145127 + AluY SINE Alu 1 303 -8 1075 213 102 4 chrY 17368557 17368811 -34144773 + AluJb SINE Alu 19 297 -15 21 0 0 0 chrY 17369076 17369097 -34144487 + AT_rich Low_complexity Low_complexity 1 21 0 2111 175 24 70 chrY 17369224 17369800 -34143784 + MER4B LTR ERV1 25 721 -45 25 0 0 0 chrY 17369971 17369996 -34143588 + AT_rich Low_complexity Low_complexity 1 25 0 230 271 150 75 chrY 17370852 17371059 -34142525 + L1M4 LINE L1 4306 4496 -1650 1277 213 88 4 chrY 17371059 17371332 -34142252 + AluSx SINE Alu 1 296 -16 230 271 150 75 chrY 17371332 17371941 -34141643 + L1M4 LINE L1 4496 5211 -935 1753 193 0 3 chrY 17371941 17372247 -34141337 + AluSx SINE Alu 1 305 -7 230 271 150 75 chrY 17372247 17372407 -34141177 + L1M4 LINE L1 5211 5357 -789 5907 115 25 12 chrY 17372927 17374258 -34139326 - L1PA8 LINE L1 -2 6485 5141 18222 189 16 28 chrY 17374261 17375810 -34137774 - L1PA8 LINE L1 -1582 4879 3312 1200 247 38 14 chrY 17375810 17376102 -34137482 - AluSx SINE Alu 0 302 4 18222 189 16 28 chrY 17376102 17379453 -34134131 - L1PA8 LINE L1 -3149 3312 6 2317 171 52 27 chrY 17379828 17380308 -34133276 + LTR22B LTR ERVK 1 492 0 318 250 52 29 chrY 17380575 17380711 -34132873 + L1MC3 LINE L1 5880 6018 -1767 2031 136 0 7 chrY 17380839 17381134 -34132450 + AluY SINE Alu 2 294 -17 498 208 0 0 chrY 17381221 17381327 -34132257 - L1MB3 LINE L1 -10 6173 6068 711 192 90 12 chrY 17381330 17381397 -34132187 - L1MB3 LINE L1 -628 5550 5490 230 0 33 0 chrY 17381397 17381427 -34132157 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 711 192 90 12 chrY 17381427 17381526 -34132058 - L1MB3 LINE L1 -688 5490 5371 * 2877 238 69 3 chrY 17381517 17382566 -34131018 + L1MB5 LINE L1 5062 6174 0 2104 248 46 59 chrY 17382724 17383458 -34130126 - MER50 LTR ERV1 0 734 10 317 266 53 26 chrY 17383968 17384081 -34129503 - L1M4 LINE L1 -5569 973 858 189 171 0 0 chrY 17384109 17384144 -34129440 + A-rich Low_complexity Low_complexity 1 35 0 649 281 49 5 chrY 17384292 17384495 -34129089 + AluJb SINE Alu 7 218 -94 427 287 9 9 chrY 17384493 17384608 -34128976 + AluJb SINE Alu 168 282 -30 * 485 292 148 49 chrY 17384645 17385117 -34128467 - L1M4 LINE L1 -5940 602 84 1769 182 0 0 chrY 17385226 17385512 -34128072 - AluSx SINE Alu -24 288 3 29 47 0 0 chrY 17386191 17386234 -34127350 + AT_rich Low_complexity Low_complexity 1 43 0 697 256 54 0 chrY 17387101 17387269 -34126315 + FRAM SINE Alu 1 176 0 1260 195 115 4 chrY 17387709 17387970 -34125614 + AluSx SINE Alu 1 290 -22 651 214 42 18 chrY 17388442 17388610 -34124974 - L1MA7 LINE L1 0 6291 6120 1083 202 9 5 chrY 17388632 17388850 -34124734 - AluSx SINE Alu -90 222 4 477 202 95 14 chrY 17388865 17389008 -34124576 - L1MA7 LINE L1 -167 6124 5962 589 307 0 0 chrY 17389021 17389187 -34124397 - FRAM SINE Alu -10 166 1 1535 210 30 19 chrY 17389188 17389555 -34124029 - L1MA7 LINE L1 -325 5966 5596 957 193 3 51 chrY 17389580 17389875 -34123709 + L1M2 LINE L1 5097 5377 -769 910 175 26 0 chrY 17389906 17390060 -34123524 - AluSg/x SINE Alu -27 283 126 800 221 23 6 chrY 17390075 17390247 -34123337 + L1M2 LINE L1 5387 5561 -730 218 380 23 16 chrY 17392055 17392184 -34121400 - L2 LINE L2 -721 2593 2464 427 228 304 25 chrY 17392675 17392745 -34120839 + AluSx SINE Alu 1 50 -262 431 62 0 16 chrY 17392745 17392809 -34120775 + (CAA)n Simple_repeat Simple_repeat 1 63 0 427 228 304 25 chrY 17392809 17392896 -34120688 + AluSx SINE Alu 50 202 -110 943 301 77 45 chrY 17393232 17393842 -34119742 + L1M1 LINE L1 1903 2547 -5018 1407 195 13 62 chrY 17393842 17394150 -34119434 + AluSq SINE Alu 1 293 -20 943 301 77 45 chrY 17394150 17394361 -34119223 + L1M1 LINE L1 2547 2750 -4815 1257 244 118 31 chrY 17394399 17395019 -34118565 + L1M1 LINE L1 3894 4567 -2998 4301 233 63 50 chrY 17395045 17396576 -34117008 + L1M1 LINE L1 4876 6425 -1140 530 268 80 0 chrY 17396583 17396721 -34116863 + FAM SINE Alu 8 156 -29 835 249 72 26 chrY 17396735 17397124 -34116460 + L1M1 LINE L1 6398 6804 -761 228 213 0 0 chrY 17397124 17397185 -34116399 + (TG)n Simple_repeat Simple_repeat 2 62 0 192 200 0 0 chrY 17397195 17397235 -34116349 + (TA)n Simple_repeat Simple_repeat 1 40 0 1347 180 9 0 chrY 17397264 17397486 -34116098 - AluSx SINE Alu -86 226 3 1805 169 0 0 chrY 17397552 17397836 -34115748 + AluSg SINE Alu 1 284 -26 23 33 0 0 chrY 17398515 17398545 -34115039 + AT_rich Low_complexity Low_complexity 1 30 0 220 349 19 28 chrY 17401195 17401301 -34112283 + L2 LINE L2 1844 1948 -1366 1052 221 62 4 chrY 17401314 17401586 -34111998 - AluJb SINE Alu -14 288 1 783 325 100 9 chrY 17401639 17402091 -34111493 + L2 LINE L2 2164 2656 -658 459 253 133 6 chrY 17402115 17402273 -34111311 - L1MB7 LINE L1 -21 6163 5986 181 209 47 23 chrY 17402544 17402587 -34110997 + L2 LINE L2 3191 3234 -79 516 32 0 0 chrY 17402630 17402692 -34110892 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1074 218 37 26 chrY 17402715 17402850 -34110734 - AluSx SINE Alu -37 275 143 183 42 0 0 chrY 17402850 17402874 -34110710 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1074 218 37 26 chrY 17402874 17403009 -34110575 - AluSx SINE Alu -169 143 2 1102 206 7 37 chrY 17403574 17403870 -34109714 - L1MB7 LINE L1 -10 6174 5888 263 284 128 9 chrY 17403895 17404004 -34109580 + LTR40b LTR ERVL 89 210 -252 543 242 92 26 chrY 17404283 17404523 -34109061 - L1P5 LINE L1 -520 5631 5376 469 204 23 0 chrY 17404546 17404634 -34108950 + AluSq SINE Alu 118 207 -106 1576 201 16 39 chrY 17404637 17405001 -34108583 + L1PA8A LINE L1 5619 5974 -157 1053 246 96 7 chrY 17405162 17405434 -34108150 - AluSx SINE Alu -11 301 6 423 0 0 0 chrY 17406993 17407040 -34106544 + (CA)n Simple_repeat Simple_repeat 2 48 0 378 0 0 0 chrY 17407039 17407081 -34106503 + (TA)n Simple_repeat Simple_repeat 2 43 0 * 2722 7 0 0 chrY 17407793 17408089 -34105495 - AluYa5 SINE Alu -15 296 1 183 310 69 23 chrY 17408443 17408530 -34105054 + L2 LINE L2 3158 3248 -24 1125 257 21 37 chrY 17409355 17409791 -34103793 + L1MA4 LINE L1 5870 6298 -2 621 288 91 104 chrY 17410275 17411191 -34102393 + MER21-int LTR ERV1 2277 3180 -1011 1540 179 11 7 chrY 17411807 17412087 -34101497 + AluSq SINE Alu 1 281 -32 950 120 5 19 chrY 17412088 17412306 -34101278 + (GAAA)n Simple_repeat Simple_repeat 1 214 0 23 0 0 0 chrY 17412337 17412360 -34101224 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrY 17413129 17413153 -34100431 + AT_rich Low_complexity Low_complexity 1 24 0 566 28 14 0 chrY 17413427 17413499 -34100085 + (TTTCC)n Simple_repeat Simple_repeat 3 75 0 1047 152 6 0 chrY 17413501 17413665 -34099919 - U1 snRNA snRNA 0 165 1 217 355 118 14 chrY 17414018 17414238 -34099346 - MIR SINE MIR 0 262 20 525 201 7 72 chrY 17414355 17414494 -34099090 - FRAM SINE Alu -43 133 4 194 269 19 0 chrY 17415214 17415266 -34098318 + L2 LINE L2 3212 3264 -8 1241 174 36 0 chrY 17415994 17416258 -34097326 + AluSg/x SINE Alu 77 348 0 309 273 91 57 chrY 17417138 17417402 -34096182 + MER46C DNA MER2_type 27 299 -39 254 290 130 30 chrY 17418238 17418338 -34095246 - MER5B DNA MER1_type -25 153 44 1620 152 16 60 chrY 17418357 17418673 -34094911 + AluSg SINE Alu 1 302 -8 273 98 0 0 chrY 17418803 17418844 -34094740 + (TA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chrY 17418905 17418927 -34094657 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrY 17419669 17419689 -34093895 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 702 131 0 0 chrY 17419719 17419826 -34093758 + LTR19B LTR ERV1 1 107 -473 1641 183 49 3 chrY 17419827 17420155 -34093429 + LTR19B LTR ERV1 238 580 0 2853 200 50 12 chrY 17420155 17420751 -34092833 + HERVFH19I LTR ERV1 2 620 -7099 553 132 35 126 chrY 17420892 17421066 -34092518 + LTR25-int LTR ERV1 4579 4736 -2260 7409 146 38 74 chrY 17421086 17422590 -34090994 + L1P3 LINE L1 377 1828 -4633 1722 183 0 0 chrY 17422594 17422883 -34090701 - AluSx SINE Alu -23 289 1 1392 260 52 27 chrY 17423109 17423589 -34089995 + MLT1D LTR MaLR 10 501 -4 232 246 72 29 chrY 17423827 17423896 -34089688 + L2 LINE L2 3194 3265 -7 288 0 0 0 chrY 17424400 17424432 -34089152 + (CA)n Simple_repeat Simple_repeat 2 33 0 462 18 0 0 chrY 17424432 17424487 -34089097 + (TA)n Simple_repeat Simple_repeat 2 56 0 760 308 69 78 chrY 17424502 17425183 -34088401 + L3 LINE CR1 620 1294 -283 377 256 16 16 chrY 17425183 17425304 -34088280 + MER117 DNA MER1_type 3 123 -74 1498 181 4 14 chrY 17425943 17426219 -34087365 - AluSq SINE Alu -40 273 1 314 228 70 35 chrY 17427011 17427125 -34086459 + L1MC4 LINE L1 6597 6714 -1328 716 271 48 0 chrY 17427270 17427477 -34086107 + MER20 DNA MER1_type 3 219 0 644 169 0 7 chrY 17429164 17429300 -34084284 + CT-rich Low_complexity Low_complexity 3 137 0 387 0 0 0 chrY 17430081 17430124 -34083460 + (TG)n Simple_repeat Simple_repeat 2 44 0 996 234 14 0 chrY 17430124 17430342 -34083242 - L1MC1 LINE L1 -9 6324 6104 1415 199 25 7 chrY 17430432 17430718 -34082866 - AluSq SINE Alu -12 291 1 938 257 14 14 chrY 17430819 17431103 -34082481 - AluSx SINE Alu -23 289 6 633 262 115 0 chrY 17432397 17432580 -34081004 + MER3 DNA MER1_type 2 205 -4 1254 206 0 0 chrY 17432681 17432914 -34080670 + AluSx SINE Alu 32 264 -48 672 48 0 0 chrY 17432968 17433052 -34080532 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 2543 138 30 45 chrY 17433100 17433593 -34079991 - LTR22B LTR ERVK -2 490 5 1056 220 169 16 chrY 17434158 17434530 -34079054 + L1M4 LINE L1 4775 5203 -943 503 191 211 26 chrY 17434534 17434686 -34078898 + L1MC3 LINE L1 6093 6272 -1513 309 310 85 55 chrY 17435202 17435473 -34078111 - L1MC1 LINE L1 -2493 5549 5271 408 153 133 51 chrY 17435691 17435789 -34077795 + FLAM_C SINE Alu 15 120 -23 264 59 0 0 chrY 17435789 17435823 -34077761 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 333 268 68 63 chrY 17435854 17436044 -34077540 - L1MC4 LINE L1 -12 8030 7840 180 0 0 0 chrY 17486711 17486731 -34026853 + (A)n Simple_repeat Simple_repeat 1 20 0 183 42 0 0 chrY 17486919 17486943 -34026641 + (A)n Simple_repeat Simple_repeat 1 24 0 571 199 102 29 chrY 17486945 17487151 -34026433 + Charlie5 DNA MER1_type 2404 2624 0 1367 222 14 24 chrY 17488130 17488423 -34025161 - AluJo SINE Alu -22 290 1 3211 170 57 5 chrY 17488574 17489185 -34024399 + LTR9B LTR ERV1 2 644 0 720 261 20 45 chrY 17489185 17489616 -34023968 + HUERS-P3b LTR ERV1 1 506 -6912 2923 229 23 39 chrY 17489662 17490458 -34023126 + HUERS-P3b LTR ERV1 764 1546 -5872 300 259 0 0 chrY 17490458 17490566 -34023018 + (TA)n Simple_repeat Simple_repeat 2 109 0 324 0 0 0 chrY 17490568 17490604 -34022980 + (TG)n Simple_repeat Simple_repeat 1 36 0 1601 203 0 0 chrY 17490605 17490881 -34022703 - AluSg SINE Alu -34 276 1 1525 153 18 3 chrY 17490882 17491164 -34022420 + HUERS-P3b LTR ERV1 1538 1823 -5595 180 301 53 80 chrY 17491164 17491277 -34022307 + L2 LINE L2 674 783 -2531 3979 148 14 8 chrY 17491277 17491980 -34021604 + HUERS-P3b LTR ERV1 1939 2645 -4773 1674 254 31 2 chrY 17491980 17492394 -34021190 - LTR8 LTR ERV1 -254 437 12 3178 164 58 50 chrY 17492394 17493121 -34020463 + HUERS-P3b LTR ERV1 3062 3794 -3624 2030 209 57 6 chrY 17493117 17493648 -34019936 + HUERS-P3b LTR ERV1 3936 4493 -2925 * 3196 175 19 28 chrY 17493640 17494327 -34019257 + HUERS-P3b LTR ERV1 4691 5371 -2047 23 0 0 0 chrY 17495261 17495284 -34018300 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 17495925 17495953 -34017631 + AT_rich Low_complexity Low_complexity 1 28 0 4212 112 2 2 chrY 17496198 17496785 -34016799 - LTR14C LTR ERVK 0 587 1 11504 103 30 2 chrY 17496785 17498520 -34015064 - HERVK14C LTR ERVK 0 7417 5635 9417 132 27 1 chrY 17498505 17500037 -34013547 - HERVK14C LTR ERVK -5844 1573 3 * 4055 111 0 30 chrY 17500039 17500641 -34012943 - LTR14C LTR ERVK -3 584 1 400 295 68 42 chrY 17500876 17501113 -34012471 + L1MC4 LINE L1 7799 8041 -1 1332 172 65 26 chrY 17501605 17501913 -34011671 + MER33 DNA MER1_type 5 324 0 192 216 0 59 chrY 17502069 17502120 -34011464 + L3b LINE CR1 1286 1333 -250 1480 200 7 23 chrY 17502859 17503159 -34010425 - AluJo SINE Alu -17 295 1 3171 176 16 19 chrY 17503322 17503965 -34009619 + LTR9B LTR ERV1 4 644 0 758 240 21 46 chrY 17503965 17504393 -34009191 + HUERS-P3b LTR ERV1 1 504 -6914 2862 236 19 46 chrY 17504441 17505246 -34008338 + HUERS-P3b LTR ERV1 764 1546 -5872 390 171 0 0 chrY 17505246 17505308 -34008276 + (TA)n Simple_repeat Simple_repeat 2 66 -17 302 0 26 0 chrY 17505308 17505346 -34008238 + (CA)n Simple_repeat Simple_repeat 2 40 0 390 171 0 0 chrY 17505346 17505365 -34008219 + (TA)n Simple_repeat Simple_repeat 65 83 0 1729 178 0 0 chrY 17505374 17505655 -34007929 - AluSg SINE Alu -29 281 1 5986 154 16 10 chrY 17505655 17506752 -34006832 + HUERS-P3b LTR ERV1 1539 2642 -4776 1793 234 31 5 chrY 17506752 17507171 -34006413 - LTR8 LTR ERV1 -250 441 12 2913 172 64 69 chrY 17507171 17507415 -34006169 + HUERS-P3b LTR ERV1 3062 3306 -4112 2317 103 0 10 chrY 17507415 17507725 -34005859 + AluY SINE Alu 1 307 -4 2913 172 64 69 chrY 17507725 17508217 -34005367 + HUERS-P3b LTR ERV1 3306 3794 -3624 2207 194 50 8 chrY 17508213 17508748 -34004836 + HUERS-P3b LTR ERV1 3936 4493 -2925 * 9792 153 40 24 chrY 17508740 17510712 -34002872 + HUERS-P3b LTR ERV1 4691 6694 -724 2104 232 5 0 chrY 17510709 17511157 -34002427 + HUERS-P3 LTR ERV1 8469 8918 -1 * 3348 166 52 3 chrY 17511164 17511778 -34001806 + LTR9B LTR ERV1 1 644 0 341 253 113 41 chrY 17512079 17512273 -34001311 + L1MC/D LINE L1 5564 5771 -2037 505 154 154 0 chrY 17512316 17512426 -34001158 - L1MC3 LINE L1 -1566 6219 6093 834 226 166 33 chrY 17512430 17512798 -34000786 - L1M4 LINE L1 -943 6622 6206 23 0 0 0 chrY 17513116 17513139 -34000445 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chrY 17513321 17513346 -34000238 + AT_rich Low_complexity Low_complexity 1 25 0 926 124 11 17 chrY 17513373 17513551 -34000033 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 1350 263 0 0 chrY 17513559 17513863 -33999721 - AluSx SINE Alu -8 304 1 236 167 37 0 chrY 17514045 17514099 -33999485 + L1P LINE L1 2309 2364 -3782 281 219 7 52 chrY 17514145 17514300 -33999284 - L1M4 LINE L1 -3986 3580 3433 360 158 40 28 chrY 17514409 17514586 -33998998 + (TA)n Simple_repeat Simple_repeat 1 179 0 325 173 69 40 chrY 17514629 17514802 -33998782 + (TA)n Simple_repeat Simple_repeat 2 179 0 232 152 48 32 chrY 17514819 17514944 -33998640 + (TA)n Simple_repeat Simple_repeat 1 127 0 474 311 42 51 chrY 17514960 17515425 -33998159 - L1M4 LINE L1 -4357 3208 2749 207 0 0 0 chrY 17515425 17515448 -33998136 + (TG)n Simple_repeat Simple_repeat 2 24 0 474 311 42 51 chrY 17515448 17515653 -33997931 - L1M4 LINE L1 -4816 2749 2544 342 0 0 0 chrY 17515791 17515829 -33997755 + (TG)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chrY 17515857 17515890 -33997694 + AT_rich Low_complexity Low_complexity 1 33 0 453 299 80 26 chrY 17515959 17516270 -33997314 - L1M4 LINE L1 -6660 829 502 261 0 0 0 chrY 17516644 17516673 -33996911 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 270 0 0 0 chrY 17516672 17516702 -33996882 + (TA)n Simple_repeat Simple_repeat 1 30 0 212 220 20 0 chrY 17517422 17517472 -33996112 + (TA)n Simple_repeat Simple_repeat 1 51 0 2091 231 47 65 chrY 17517700 17518643 -33994941 - L1PA16 LINE L1 -48 6118 5192 3354 69 4 11 chrY 17518713 17519164 -33994420 + LTR7 LTR ERV1 1 448 -2 180 231 0 0 chrY 17520106 17520158 -33993426 + (TATG)n Simple_repeat Simple_repeat 1 52 0 204 67 0 0 chrY 17520868 17520898 -33992686 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 6525 59 1 0 chrY 17521022 17521854 -33991730 + L1PA4 LINE L1 5320 6152 -3 1635 190 3 38 chrY 17522483 17522799 -33990785 - AluSx SINE Alu -7 305 1 187 310 52 0 chrY 17523021 17523079 -33990505 + MIR SINE MIR 6 66 -196 1395 209 8 0 chrY 17526924 17527187 -33986397 + AluSg1 SINE Alu 1 265 -44 524 181 22 7 chrY 17527195 17527333 -33986251 + (TA)n Simple_repeat Simple_repeat 2 141 0 240 167 0 0 chrY 17527337 17527385 -33986199 + (CA)n Simple_repeat Simple_repeat 1 48 0 1473 233 3 13 chrY 17527392 17527705 -33985879 + AluSg SINE Alu 1 310 0 860 197 65 145 chrY 17528408 17528733 -33984851 + AluSx SINE Alu 6 304 -8 1086 252 126 15 chrY 17530514 17530926 -33982658 + MLT1C LTR MaLR 3 460 -7 189 0 0 0 chrY 17531785 17531806 -33981778 + (T)n Simple_repeat Simple_repeat 1 21 0 1203 221 10 34 chrY 17532218 17532516 -33981068 + AluJb SINE Alu 1 291 -21 436 360 44 13 chrY 17532674 17532902 -33980682 + MIR SINE MIR 18 252 -10 430 250 0 0 chrY 17533297 17533401 -33980183 + MER58B DNA MER1_type 222 325 -16 366 42 0 0 chrY 17533710 17533758 -33979826 + (TG)n Simple_repeat Simple_repeat 2 49 0 613 169 164 33 chrY 17534169 17534352 -33979232 + MER3 DNA MER1_type 3 209 0 1006 227 109 0 chrY 17534376 17534596 -33978988 - AluSx SINE Alu -68 244 1 1260 255 53 49 chrY 17534920 17535414 -33978170 + MLT1D LTR MaLR 10 505 0 227 303 90 11 chrY 17535643 17535732 -33977852 + L2 LINE L2 3169 3264 -8 203 0 37 0 chrY 17536265 17536292 -33977292 + (TG)n Simple_repeat Simple_repeat 2 29 0 323 247 54 21 chrY 17536314 17536407 -33977177 - L1MC4 LINE L1 -1339 6703 6608 277 24 48 0 chrY 17536526 17536568 -33977016 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 2819 146 4 0 chrY 17536728 17537194 -33976390 - L1PA8 LINE L1 -2 6170 5703 2380 126 17 11 chrY 17537194 17537687 -33975897 + L1P3 LINE L1 5179 5663 -509 306 125 0 0 chrY 17538153 17538201 -33975383 + (T)n Simple_repeat Simple_repeat 1 48 0 445 347 108 17 chrY 17538435 17538853 -33974731 + L3 LINE CR1 527 982 -595 486 252 36 7 chrY 17539127 17539266 -33974318 + MER117 DNA MER1_type 4 146 -51 3693 156 5 0 chrY 17540141 17540725 -33972859 + LTR14C LTR ERVK 1 587 0 11369 124 5 2 chrY 17540725 17542496 -33971088 + HERVK14C LTR ERVK 1 1775 -5642 * 12572 100 4 11 chrY 17542493 17544357 -33969227 + HERVK14C LTR ERVK 1902 3751 -3666 6906 107 12 23 chrY 17544351 17545458 -33968126 + HERVK14C LTR ERVK 6320 7414 -3 * 4262 104 2 2 chrY 17545460 17546047 -33967537 + LTR14C LTR ERVK 1 587 0 693 260 70 0 chrY 17546727 17546927 -33966657 + MER20 DNA MER1_type 3 216 -3 984 244 5 0 chrY 17549863 17550084 -33963500 - L1MC1 LINE L1 -8 6325 6104 1372 216 11 7 chrY 17550171 17550477 -33963107 - AluSx SINE Alu 0 307 1 1055 184 0 0 chrY 17550581 17550749 -33962835 - AluSq SINE Alu -145 168 1 1439 163 19 4 chrY 17550777 17551047 -33962537 - L1PA7 LINE L1 -7 6147 5874 1379 221 14 3 chrY 17551107 17551397 -33962187 - AluSx SINE Alu -19 293 1 2052 126 3 7 chrY 17552372 17552666 -33960918 + AluY SINE Alu 1 293 -18 240 149 0 0 chrY 17553353 17553400 -33960184 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 663 229 120 6 chrY 17553595 17553778 -33959806 + MER3 DNA MER1_type 2 205 -4 1350 263 0 0 chrY 17553870 17554174 -33959410 + AluSx SINE Alu 1 304 -8 698 135 14 20 chrY 17554182 17554330 -33959254 + GA-rich Low_complexity Low_complexity 4 150 0 999 113 6 17 chrY 17554201 17554378 -33959206 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 25 0 0 0 chrY 17554399 17554424 -33959160 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chrY 17554606 17554629 -33958955 + AT_rich Low_complexity Low_complexity 1 23 0 834 226 166 33 chrY 17554947 17555315 -33958269 + L1M4 LINE L1 4787 5203 -943 505 154 154 0 chrY 17555319 17555429 -33958155 + L1MC3 LINE L1 6093 6219 -1566 341 253 113 41 chrY 17555472 17555666 -33957918 - L1MC1 LINE L1 -2037 5771 5564 3348 166 52 3 chrY 17555967 17556581 -33957003 - LTR9B LTR ERV1 0 644 1 2104 232 5 0 chrY 17556588 17557036 -33956548 - HUERS-P3 LTR ERV1 -1 8918 8469 * 9792 153 40 24 chrY 17557033 17559005 -33954579 - HUERS-P3b LTR ERV1 -724 6694 4691 2207 194 50 8 chrY 17558997 17559532 -33954052 - HUERS-P3b LTR ERV1 -2925 4493 3936 * 2913 172 64 69 chrY 17559528 17560020 -33953564 - HUERS-P3b LTR ERV1 -3624 3794 3306 2317 103 0 10 chrY 17560020 17560330 -33953254 - AluY SINE Alu -4 307 1 2913 172 64 69 chrY 17560330 17560574 -33953010 - HUERS-P3b LTR ERV1 -4112 3306 3062 1793 234 31 5 chrY 17560574 17560993 -33952591 + LTR8 LTR ERV1 12 441 -250 5986 154 16 10 chrY 17560993 17562090 -33951494 - HUERS-P3b LTR ERV1 -4776 2642 1539 1729 178 0 0 chrY 17562090 17562371 -33951213 + AluSg SINE Alu 1 281 -29 390 171 0 0 chrY 17562380 17562399 -33951185 + (TA)n Simple_repeat Simple_repeat 2 20 -63 302 0 26 0 chrY 17562399 17562437 -33951147 + (TG)n Simple_repeat Simple_repeat 2 40 0 390 171 0 0 chrY 17562437 17562499 -33951085 + (TA)n Simple_repeat Simple_repeat 19 83 0 2862 236 19 46 chrY 17562499 17563304 -33950280 - HUERS-P3b LTR ERV1 -5872 1546 764 758 240 21 46 chrY 17563352 17563780 -33949804 - HUERS-P3b LTR ERV1 -6914 504 1 3171 176 16 19 chrY 17563780 17564423 -33949161 - LTR9B LTR ERV1 0 644 4 1480 200 7 23 chrY 17564586 17564886 -33948698 + AluJo SINE Alu 1 295 -17 192 216 0 59 chrY 17565625 17565676 -33947908 - L3b LINE CR1 -250 1333 1286 1332 172 65 26 chrY 17565832 17566140 -33947444 - MER33 DNA MER1_type 0 324 5 400 295 68 42 chrY 17566632 17566869 -33946715 - L1MC4 LINE L1 -1 8041 7799 4055 111 0 30 chrY 17567104 17567706 -33945878 + LTR14C LTR ERVK 1 584 -3 9417 132 27 1 chrY 17567708 17569240 -33944344 + HERVK14C LTR ERVK 3 1573 -5844 * 11504 103 30 2 chrY 17569225 17570960 -33942624 + HERVK14C LTR ERVK 5635 7417 0 4212 112 2 2 chrY 17570960 17571547 -33942037 + LTR14C LTR ERVK 1 587 0 21 36 0 0 chrY 17571792 17571820 -33941764 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 17572461 17572484 -33941100 + AT_rich Low_complexity Low_complexity 1 23 0 3196 175 19 28 chrY 17573418 17574105 -33939479 - HUERS-P3b LTR ERV1 -2047 5371 4691 2030 209 57 6 chrY 17574097 17574628 -33938956 - HUERS-P3b LTR ERV1 -2925 4493 3936 * 3178 164 58 50 chrY 17574624 17575351 -33938233 - HUERS-P3b LTR ERV1 -3624 3794 3062 1674 254 31 2 chrY 17575351 17575765 -33937819 + LTR8 LTR ERV1 12 437 -254 3979 148 14 8 chrY 17575765 17576468 -33937116 - HUERS-P3b LTR ERV1 -4773 2645 1939 180 301 53 80 chrY 17576468 17576581 -33937003 - L2 LINE L2 -2531 783 674 1525 153 18 3 chrY 17576581 17576863 -33936721 - HUERS-P3b LTR ERV1 -5595 1823 1538 1601 203 0 0 chrY 17576864 17577140 -33936444 + AluSg SINE Alu 1 276 -34 324 0 0 0 chrY 17577141 17577177 -33936407 + (CA)n Simple_repeat Simple_repeat 1 36 0 318 254 0 0 chrY 17577179 17577289 -33936295 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 2923 229 23 39 chrY 17577289 17578085 -33935499 - HUERS-P3b LTR ERV1 -5872 1546 764 720 261 20 45 chrY 17578131 17578562 -33935022 - HUERS-P3b LTR ERV1 -6912 506 1 3211 170 57 5 chrY 17578562 17579173 -33934411 - LTR9B LTR ERV1 0 644 2 1367 222 14 24 chrY 17579324 17579617 -33933967 + AluJo SINE Alu 1 290 -22 739 205 74 64 chrY 17580596 17580893 -33932691 - MER33 DNA MER1_type 0 324 25 579 214 58 62 chrY 17580910 17581153 -33932431 - MER33 DNA MER1_type -78 246 5 759 148 0 28 chrY 17581239 17581381 -33932203 + LTR14C LTR ERVK 450 587 0 23 0 0 0 chrY 17582287 17582310 -33931274 + AT_rich Low_complexity Low_complexity 1 23 0 347 384 59 33 chrY 17583234 17583541 -33930043 + L2 LINE L2 2944 3258 -14 1053 269 33 0 chrY 17583751 17584022 -33929562 + AluJb SINE Alu 1 280 -32 1370 204 59 3 chrY 17584221 17584510 -33929074 - AluSq SINE Alu -8 305 1 247 340 113 11 chrY 17585102 17585287 -33928297 - L3 LINE CR1 -1180 397 194 672 224 0 15 chrY 17585881 17586015 -33927569 - FLAM_A SINE Alu -1 132 1 201 288 34 0 chrY 17587232 17587291 -33926293 + L2 LINE L2 3250 3310 -3 22 35 0 0 chrY 17588865 17588894 -33924690 + AT_rich Low_complexity Low_complexity 1 29 0 1279 219 3 71 chrY 17588987 17589183 -33924401 - AluSx SINE Alu -9 303 136 1554 218 0 11 chrY 17589183 17589468 -33924116 - AluSx SINE Alu -30 282 1 1279 219 3 71 chrY 17589468 17589596 -33923988 - AluSx SINE Alu -176 136 1 21 36 0 0 chrY 17590777 17590805 -33922779 + AT_rich Low_complexity Low_complexity 1 28 0 440 277 75 55 chrY 17592075 17592311 -33921273 + MIR SINE MIR 6 256 -6 472 218 21 128 chrY 17592954 17593073 -33920511 - MER46C DNA MER2_type -117 221 140 2133 138 0 3 chrY 17593073 17593385 -33920199 - AluY SINE Alu 0 311 1 472 218 21 128 chrY 17593385 17593508 -33920076 - MER46C DNA MER2_type -198 140 5 1631 202 0 16 chrY 17595297 17595604 -33917980 - AluSx SINE Alu -8 304 3 1401 167 57 144 chrY 17595854 17596430 -33917154 + LTR61 LTR ERV1 70 595 0 1544 245 5 16 chrY 17596439 17596827 -33916757 + HERV3 LTR ERV1 10 393 -8033 * 17289 262 28 28 chrY 17596826 17601628 -33911956 + HERV3 LTR ERV1 299 5099 -3327 3784 103 32 38 chrY 17601629 17602674 -33910910 - MER11A LTR ERVK 0 1266 1 4166 278 50 13 chrY 17602674 17603843 -33909741 + HERV3 LTR ERV1 5095 6306 -2120 515 233 8 15 chrY 17603941 17604074 -33909510 + HERV3 LTR ERV1 8287 8418 -8 1706 200 66 47 chrY 17604084 17604598 -33908986 + LTR61 LTR ERV1 72 595 0 1693 176 32 0 chrY 17604617 17604901 -33908683 - AluSg SINE Alu -17 293 1 201 324 176 18 chrY 17605851 17606021 -33907563 + MIR3 SINE MIR 8 204 -4 216 306 61 10 chrY 17607596 17607694 -33905890 - L2 LINE L2 -7 3306 3204 219 36 0 0 chrY 17609252 17609280 -33904304 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 975 208 67 104 chrY 17612251 17612626 -33900958 + MLT1A1 LTR MaLR 3 363 -2 192 77 0 0 chrY 17614078 17614104 -33899480 + (A)n Simple_repeat Simple_repeat 1 26 0 256 167 9 185 chrY 17616924 17617151 -33896433 - MER53 DNA DNA -1 188 2 413 321 14 37 chrY 17618531 17618746 -33894838 + L1MDa LINE L1 118 327 -6213 44400 179 25 8 chrY 17618806 17626931 -33886653 + HERV3 LTR ERV1 165 8426 0 2598 193 43 17 chrY 17626978 17627518 -33886066 + LTR4 LTR ERV1 43 596 0 1644 181 7 13 chrY 17628141 17628445 -33885139 + AluSc SINE Alu 1 302 -7 250 44 22 22 chrY 17629976 17630021 -33883563 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1636 175 3 3 chrY 17632184 17632469 -33881115 - AluY SINE Alu 0 311 27 1402 109 0 0 chrY 17633081 17633273 -33880311 - AluY SINE Alu -119 192 1 246 272 0 33 chrY 17634284 17634376 -33879208 - MIR SINE MIR -49 213 125 1471 186 148 5 chrY 17634537 17634914 -33878670 + MER9 LTR ERVK 81 511 0 678 223 11 17 chrY 17634914 17635089 -33878495 + HERVK9 LTR ERVK 1 174 -5742 * 10723 176 37 49 chrY 17635087 17637699 -33875885 + HERVK9 LTR ERVK 3321 5900 -16 2344 161 82 11 chrY 17637716 17638193 -33875391 + MER9 LTR ERVK 1 511 0 620 285 23 54 chrY 17638373 17638724 -33874860 + L1MDa LINE L1 56 395 -6145 30 0 0 0 chrY 17638724 17638754 -33874830 + AT_rich Low_complexity Low_complexity 1 30 0 2133 122 6 31 chrY 17638891 17639212 -33874372 - AluSp SINE Alu 0 313 1 1140 267 72 50 chrY 17639519 17640333 -33873251 + L1M4 LINE L1 4373 5204 -942 1266 151 79 118 chrY 17640337 17640579 -33873005 + MER52C LTR ERV1 890 1111 -167 2840 187 28 5 chrY 17640579 17641146 -33872438 - LTR22 LTR ERVK 0 580 1 1266 151 79 118 chrY 17641146 17641308 -33872276 + MER52C LTR ERV1 1111 1278 0 1125 290 91 33 chrY 17641331 17642109 -33871475 - L1MDa LINE L1 -5469 1071 35 898 156 23 40 chrY 17642683 17642856 -33870728 - AluSg/x SINE Alu -23 287 118 333 0 0 0 chrY 17643640 17643677 -33869907 + (TG)n Simple_repeat Simple_repeat 2 38 0 1368 226 21 0 chrY 17644129 17644416 -33869168 + AluSx SINE Alu 11 303 -9 195 114 0 0 chrY 17644766 17644801 -33868783 + (TG)n Simple_repeat Simple_repeat 2 36 0 904 253 64 29 chrY 17644917 17645293 -33868291 + MSTD LTR MaLR 1 389 -7 214 186 0 0 chrY 17647690 17647733 -33865851 + A-rich Low_complexity Low_complexity 2 44 0 538 271 85 10 chrY 17647813 17648012 -33865572 + L1MB5 LINE L1 5949 6162 -12 29 0 0 0 chrY 17648233 17648262 -33865322 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chrY 17648805 17648851 -33864733 + AT_rich Low_complexity Low_complexity 1 46 0 277 235 88 29 chrY 17649187 17649289 -33864295 + MER67C LTR ERV1 487 594 -116 564 234 10 94 chrY 17649291 17649492 -33864092 - AluJo SINE Alu -117 195 12 422 294 10 5 chrY 17649501 17649627 -33863957 - FLAM_C SINE Alu -10 123 13 30 69 0 0 chrY 17651283 17651341 -33862243 + AT_rich Low_complexity Low_complexity 1 58 0 591 286 39 0 chrY 17651438 17651620 -33861964 + MER2 DNA MER2_type 7 195 -150 1011 184 0 88 chrY 17651983 17652211 -33861373 - AluSq SINE Alu -24 289 82 22 35 0 0 chrY 17653110 17653139 -33860445 + AT_rich Low_complexity Low_complexity 1 29 0 2071 243 8 2 chrY 17653256 17653738 -33859846 + MER1A DNA MER1_type 28 512 -17 2409 17 0 0 chrY 17653909 17654196 -33859388 - L1PA3 LINE L1 -511 5644 5358 4047 36 0 22 chrY 17654196 17654701 -33858883 + L1PA3 LINE L1 5661 6155 0 320 88 18 0 chrY 17655264 17655321 -33858263 + (TG)n Simple_repeat Simple_repeat 1 58 0 449 358 5 14 chrY 17655370 17655577 -33858007 - AluJb SINE Alu -107 205 1 259 164 30 15 chrY 17655670 17655737 -33857847 + (TA)n Simple_repeat Simple_repeat 2 69 0 354 290 0 20 chrY 17655977 17656077 -33857507 - AluJb SINE Alu -121 181 84 28 48 0 0 chrY 17656410 17656452 -33857132 + AT_rich Low_complexity Low_complexity 1 42 0 1108 305 8 37 chrY 17656507 17656936 -33856648 - MER52A LTR ERV1 -462 1293 923 1494 146 8 0 chrY 17657024 17657264 -33856320 + AluSp SINE Alu 66 307 -6 236 145 0 16 chrY 17657277 17657339 -33856245 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 372 239 18 31 chrY 17657446 17657609 -33855975 + (CCCTAA)n Simple_repeat Simple_repeat 1 161 0 189 214 0 27 chrY 17657625 17657737 -33855847 + (CCCTAA)n Simple_repeat Simple_repeat 6 114 0 257 230 0 46 chrY 17657752 17658044 -33855540 + (CCCTAA)n Simple_repeat Simple_repeat 1 278 0 310 242 33 33 chrY 17658104 17658257 -33855327 + (CCCTAA)n Simple_repeat Simple_repeat 5 157 0 181 202 0 34 chrY 17658326 17658415 -33855169 + (CCCTAA)n Simple_repeat Simple_repeat 5 90 0 194 214 0 14 chrY 17658504 17658574 -33855010 + (CCCTAA)n Simple_repeat Simple_repeat 4 72 0 326 172 12 37 chrY 17658746 17658909 -33854675 + (CCCTAA)n Simple_repeat Simple_repeat 6 164 0 289 286 0 29 chrY 17659034 17659209 -33854375 + (CCCTAA)n Simple_repeat Simple_repeat 5 174 0 475 212 11 58 chrY 17659296 17659485 -33854099 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 310 140 17 56 chrY 17659545 17659724 -33853860 + (CCCTAA)n Simple_repeat Simple_repeat 3 174 0 456 231 0 38 chrY 17659735 17659895 -33853689 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 248 215 23 23 chrY 17659912 17660084 -33853500 + (CCCTAA)n Simple_repeat Simple_repeat 2 173 0 21 0 0 0 chrY 17660210 17660231 -33853353 + AT_rich Low_complexity Low_complexity 1 21 0 256 332 65 16 chrY 17660379 17660456 -33853128 + L1M4 LINE L1 3732 3804 -2342 261 0 0 0 chrY 17660456 17660485 -33853099 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 256 332 65 16 chrY 17660485 17660801 -33852783 + L1M4 LINE L1 3804 4148 -1998 199 109 0 43 chrY 17660803 17660849 -33852735 + (TA)n Simple_repeat Simple_repeat 2 45 0 333 272 0 22 chrY 17660851 17660943 -33852641 - L1MC4 LINE L1 -1339 6703 6614 343 309 44 0 chrY 17661044 17661248 -33852336 + L1M4 LINE L1 4187 4399 -1747 25 31 0 0 chrY 17661777 17661809 -33851775 + AT_rich Low_complexity Low_complexity 1 32 0 2080 87 59 0 chrY 17662073 17662360 -33851224 + AluY SINE Alu 1 304 -7 1075 213 102 4 chrY 17662460 17662714 -33850870 + AluJb SINE Alu 19 297 -15 21 0 0 0 chrY 17662979 17663000 -33850584 + AT_rich Low_complexity Low_complexity 1 21 0 2111 175 24 70 chrY 17663127 17663703 -33849881 + MER4B LTR ERV1 25 721 -45 25 0 0 0 chrY 17663874 17663899 -33849685 + AT_rich Low_complexity Low_complexity 1 25 0 230 271 150 75 chrY 17664755 17664962 -33848622 + L1M4 LINE L1 4306 4496 -1650 1277 213 88 4 chrY 17664962 17665235 -33848349 + AluSx SINE Alu 1 296 -16 230 271 150 75 chrY 17665235 17665844 -33847740 + L1M4 LINE L1 4496 5211 -935 1753 193 0 3 chrY 17665844 17666150 -33847434 + AluSx SINE Alu 1 305 -7 230 271 150 75 chrY 17666150 17666310 -33847274 + L1M4 LINE L1 5211 5357 -789 5907 115 25 12 chrY 17666830 17668161 -33845423 - L1PA8 LINE L1 -2 6485 5141 18247 189 16 28 chrY 17668164 17669713 -33843871 - L1PA8 LINE L1 -1582 4879 3313 1219 243 38 14 chrY 17669713 17670005 -33843579 - AluSx SINE Alu 0 302 4 18247 189 16 28 chrY 17670005 17673355 -33840229 - L1PA8 LINE L1 -3148 3313 6 2302 173 52 27 chrY 17673730 17674210 -33839374 + LTR22B LTR ERVK 1 492 0 318 250 52 29 chrY 17674477 17674613 -33838971 + L1MC3 LINE L1 5880 6018 -1767 2031 136 0 7 chrY 17674741 17675036 -33838548 + AluY SINE Alu 2 294 -17 498 208 0 0 chrY 17675123 17675229 -33838355 - L1MB3 LINE L1 -10 6173 6068 711 192 90 12 chrY 17675232 17675299 -33838285 - L1MB3 LINE L1 -628 5550 5490 230 0 33 0 chrY 17675299 17675329 -33838255 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 711 192 90 12 chrY 17675329 17675428 -33838156 - L1MB3 LINE L1 -688 5490 5371 * 2877 238 69 3 chrY 17675419 17676468 -33837116 + L1MB5 LINE L1 5062 6174 0 2104 248 46 59 chrY 17676626 17677360 -33836224 - MER50 LTR ERV1 0 734 10 317 266 53 26 chrY 17677870 17677983 -33835601 - L1M4 LINE L1 -5569 973 858 189 171 0 0 chrY 17678011 17678046 -33835538 + A-rich Low_complexity Low_complexity 1 35 0 649 281 49 5 chrY 17678194 17678397 -33835187 + AluJb SINE Alu 7 218 -94 427 287 9 9 chrY 17678395 17678510 -33835074 + AluJb SINE Alu 168 282 -30 * 485 292 148 49 chrY 17678547 17679019 -33834565 - L1M4 LINE L1 -5940 602 84 1769 182 0 0 chrY 17679128 17679414 -33834170 - AluSx SINE Alu -24 288 3 29 47 0 0 chrY 17680093 17680136 -33833448 + AT_rich Low_complexity Low_complexity 1 43 0 697 256 54 0 chrY 17681003 17681171 -33832413 + FRAM SINE Alu 1 176 0 1260 195 115 4 chrY 17681611 17681872 -33831712 + AluSx SINE Alu 1 290 -22 627 220 42 18 chrY 17682344 17682512 -33831072 - L1MA7 LINE L1 0 6291 6120 1083 202 9 5 chrY 17682534 17682752 -33830832 - AluSx SINE Alu -90 222 4 477 202 95 14 chrY 17682767 17682910 -33830674 - L1MA7 LINE L1 -167 6124 5962 589 307 0 0 chrY 17682923 17683089 -33830495 - FRAM SINE Alu -10 166 1 1535 210 30 19 chrY 17683090 17683457 -33830127 - L1MA7 LINE L1 -325 5966 5596 957 193 3 51 chrY 17683482 17683777 -33829807 + L1M2 LINE L1 5097 5377 -769 910 175 26 0 chrY 17683808 17683962 -33829622 - AluSg/x SINE Alu -27 285 128 800 221 23 6 chrY 17683977 17684149 -33829435 + L1M2 LINE L1 5387 5561 -730 218 380 23 16 chrY 17685957 17686086 -33827498 - L2 LINE L2 -721 2593 2464 427 228 304 25 chrY 17686577 17686647 -33826937 + AluSx SINE Alu 1 50 -262 431 62 0 16 chrY 17686647 17686711 -33826873 + (CAA)n Simple_repeat Simple_repeat 1 63 0 427 228 304 25 chrY 17686711 17686798 -33826786 + AluSx SINE Alu 50 202 -110 943 301 77 45 chrY 17687134 17687744 -33825840 + L1M1 LINE L1 1903 2547 -5018 1407 195 13 62 chrY 17687744 17688052 -33825532 + AluSq SINE Alu 1 293 -20 943 301 77 45 chrY 17688052 17688263 -33825321 + L1M1 LINE L1 2547 2750 -4815 1257 244 118 31 chrY 17688301 17688921 -33824663 + L1M1 LINE L1 3894 4567 -2998 4301 233 63 50 chrY 17688947 17690478 -33823106 + L1M1 LINE L1 4876 6425 -1140 530 268 80 0 chrY 17690485 17690623 -33822961 + FAM SINE Alu 8 156 -29 835 249 72 26 chrY 17690637 17691026 -33822558 + L1M1 LINE L1 6398 6804 -761 228 213 0 0 chrY 17691026 17691087 -33822497 + (TG)n Simple_repeat Simple_repeat 2 62 0 192 200 0 0 chrY 17691097 17691137 -33822447 + (TA)n Simple_repeat Simple_repeat 1 40 0 1347 180 9 0 chrY 17691166 17691388 -33822196 - AluSx SINE Alu -86 226 3 1805 169 0 0 chrY 17691454 17691738 -33821846 + AluSg SINE Alu 1 284 -26 23 33 0 0 chrY 17692417 17692447 -33821137 + AT_rich Low_complexity Low_complexity 1 30 0 220 349 19 28 chrY 17695097 17695203 -33818381 + L2 LINE L2 1844 1948 -1366 1052 221 62 4 chrY 17695216 17695488 -33818096 - AluJb SINE Alu -14 288 1 783 325 100 9 chrY 17695541 17695993 -33817591 + L2 LINE L2 2164 2656 -658 459 253 133 6 chrY 17696017 17696175 -33817409 - L1MB7 LINE L1 -21 6163 5986 181 209 47 23 chrY 17696446 17696489 -33817095 + L2 LINE L2 3191 3234 -79 480 35 0 0 chrY 17696532 17696590 -33816994 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1071 218 37 26 chrY 17696613 17696748 -33816836 - AluSx SINE Alu -37 275 143 183 42 0 0 chrY 17696748 17696772 -33816812 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1071 218 37 26 chrY 17696772 17696907 -33816677 - AluSx SINE Alu -169 143 2 1102 206 7 37 chrY 17697472 17697768 -33815816 - L1MB7 LINE L1 -10 6174 5888 263 284 128 9 chrY 17697793 17697902 -33815682 + LTR40b LTR ERVL 89 210 -252 543 242 92 26 chrY 17698181 17698421 -33815163 - L1P5 LINE L1 -520 5631 5376 469 204 23 0 chrY 17698444 17698532 -33815052 + AluSq SINE Alu 118 207 -106 1576 201 16 39 chrY 17698535 17698899 -33814685 + L1PA8A LINE L1 5619 5974 -157 1053 246 96 7 chrY 17699060 17699332 -33814252 - AluSx SINE Alu -11 301 6 459 0 0 0 chrY 17700891 17700942 -33812642 + (CA)n Simple_repeat Simple_repeat 2 52 0 342 0 0 0 chrY 17700941 17700979 -33812605 + (TA)n Simple_repeat Simple_repeat 2 39 0 * 2722 7 0 0 chrY 17701691 17701987 -33811597 - AluYa5 SINE Alu -15 296 1 183 310 69 23 chrY 17702341 17702428 -33811156 + L2 LINE L2 3158 3248 -24 1125 257 21 37 chrY 17703254 17703690 -33809894 + L1MA4 LINE L1 5870 6298 -2 621 288 91 104 chrY 17704174 17705090 -33808494 + MER21-int LTR ERV1 2277 3180 -1011 1540 179 11 7 chrY 17705706 17705986 -33807598 + AluSq SINE Alu 1 281 -32 950 120 5 19 chrY 17705987 17706205 -33807379 + (GAAA)n Simple_repeat Simple_repeat 1 214 0 23 0 0 0 chrY 17706236 17706259 -33807325 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrY 17707028 17707052 -33806532 + AT_rich Low_complexity Low_complexity 1 24 0 566 28 14 0 chrY 17707325 17707397 -33806187 + (TTTCC)n Simple_repeat Simple_repeat 3 75 0 1047 152 6 0 chrY 17707399 17707563 -33806021 - U1 snRNA snRNA 0 165 1 217 355 118 14 chrY 17707916 17708136 -33805448 - MIR SINE MIR 0 262 20 525 201 7 72 chrY 17708253 17708392 -33805192 - FRAM SINE Alu -43 133 4 194 269 19 0 chrY 17709112 17709164 -33804420 + L2 LINE L2 3212 3264 -8 1233 175 36 0 chrY 17709892 17710155 -33803429 + AluSg/x SINE Alu 77 347 0 309 273 91 57 chrY 17711035 17711299 -33802285 + MER46C DNA MER2_type 27 299 -39 254 290 130 30 chrY 17712135 17712235 -33801349 - MER5B DNA MER1_type -25 153 44 1620 152 16 60 chrY 17712254 17712570 -33801014 + AluSg SINE Alu 1 302 -8 273 98 0 0 chrY 17712700 17712741 -33800843 + (TA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chrY 17712802 17712824 -33800760 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrY 17713566 17713586 -33799998 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 702 131 0 0 chrY 17713616 17713723 -33799861 + LTR19B LTR ERV1 1 107 -473 1641 183 49 3 chrY 17713724 17714052 -33799532 + LTR19B LTR ERV1 238 580 0 2853 200 50 12 chrY 17714052 17714648 -33798936 + HERVFH19I LTR ERV1 2 620 -7099 553 132 35 126 chrY 17714789 17714963 -33798621 + LTR25-int LTR ERV1 4579 4736 -2260 7369 146 38 74 chrY 17714983 17716486 -33797098 + L1P3 LINE L1 377 1828 -4633 1722 183 0 0 chrY 17716490 17716779 -33796805 - AluSx SINE Alu -23 289 1 1392 260 52 27 chrY 17717005 17717485 -33796099 + MLT1D LTR MaLR 10 501 -4 232 246 72 29 chrY 17717723 17717792 -33795792 + L2 LINE L2 3194 3265 -7 288 0 0 0 chrY 17718296 17718328 -33795256 + (CA)n Simple_repeat Simple_repeat 2 33 0 462 18 0 0 chrY 17718328 17718383 -33795201 + (TA)n Simple_repeat Simple_repeat 2 56 0 760 308 69 78 chrY 17718398 17719079 -33794505 + L3 LINE CR1 620 1294 -283 377 256 16 16 chrY 17719079 17719200 -33794384 + MER117 DNA MER1_type 3 123 -74 1498 181 4 14 chrY 17719839 17720115 -33793469 - AluSq SINE Alu -40 273 1 314 228 70 35 chrY 17720907 17721021 -33792563 + L1MC4 LINE L1 6597 6714 -1328 716 271 48 0 chrY 17721166 17721373 -33792211 + MER20 DNA MER1_type 3 219 0 644 169 0 7 chrY 17723060 17723196 -33790388 + CT-rich Low_complexity Low_complexity 3 137 0 369 0 0 0 chrY 17723977 17724018 -33789566 + (TG)n Simple_repeat Simple_repeat 2 42 0 996 234 14 0 chrY 17724018 17724236 -33789348 - L1MC1 LINE L1 -9 6324 6104 1415 199 25 7 chrY 17724326 17724612 -33788972 - AluSq SINE Alu -12 291 1 938 257 14 14 chrY 17724713 17724997 -33788587 - AluSx SINE Alu -23 289 6 633 262 115 0 chrY 17726291 17726474 -33787110 + MER3 DNA MER1_type 2 205 -4 1254 206 0 0 chrY 17726575 17726808 -33786776 + AluSx SINE Alu 32 264 -48 672 48 0 0 chrY 17726862 17726946 -33786638 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 2543 138 30 45 chrY 17726994 17727487 -33786097 - LTR22B LTR ERVK -2 490 5 1056 220 169 16 chrY 17728052 17728424 -33785160 + L1M4 LINE L1 4775 5203 -943 503 191 211 26 chrY 17728428 17728580 -33785004 + L1MC3 LINE L1 6093 6272 -1513 309 310 85 55 chrY 17729096 17729367 -33784217 - L1MC1 LINE L1 -2493 5549 5271 408 153 133 51 chrY 17729585 17729683 -33783901 + FLAM_C SINE Alu 15 120 -23 264 59 0 0 chrY 17729683 17729717 -33783867 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 333 268 68 63 chrY 17729748 17729938 -33783646 - L1MC4 LINE L1 -12 8030 7840 438 323 90 52 chrY 17732051 17732361 -33781223 + L2 LINE L2 2946 3267 -5 1168 275 25 11 chrY 17732562 17732846 -33780738 + AluJb SINE Alu 1 288 -14 1695 187 10 0 chrY 17732991 17733290 -33780294 - AluSq SINE Alu -11 302 1 1790 173 11 0 chrY 17733419 17733702 -33779882 - AluSg1 SINE Alu -13 296 11 279 308 164 6 chrY 17734225 17734384 -33779200 - L3 LINE CR1 -1195 382 199 186 71 0 0 chrY 17735022 17735050 -33778534 + (T)n Simple_repeat Simple_repeat 1 28 0 540 230 0 0 chrY 17735080 17735180 -33778404 - FLAM_A SINE Alu -21 121 22 1660 176 28 0 chrY 17735325 17735609 -33777975 - AluSq SINE Alu -21 292 1 181 346 0 39 chrY 17736712 17736790 -33776794 + L2 LINE L2 3232 3306 -7 22 35 0 0 chrY 17736916 17736945 -33776639 + AT_rich Low_complexity Low_complexity 1 29 0 188 289 289 0 chrY 17739413 17739541 -33774043 + MIR SINE MIR 82 246 -16 1224 243 3 23 chrY 17739854 17740038 -33773546 - AluSx SINE Alu -6 306 129 1541 219 3 0 chrY 17740038 17740349 -33773235 - AluSx SINE Alu 0 312 1 1224 243 3 23 chrY 17740349 17740473 -33773111 - AluSx SINE Alu -183 129 4 1056 208 5 9 chrY 17740959 17741175 -33772409 - AluSc SINE Alu -94 215 1 243 253 38 38 chrY 17741288 17741367 -33772217 + LTR33 LTR ERVL 75 153 -368 699 246 97 21 chrY 17741793 17742309 -33771275 - L1MC/D LINE L1 -748 5398 5017 5374 211 28 6 chrY 17742370 17742773 -33770811 + L1P3 LINE L1 5 398 -6063 207 0 0 0 chrY 17742773 17742796 -33770788 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5374 211 28 6 chrY 17742796 17743487 -33770097 + L1P3 LINE L1 398 1123 -5338 2004 156 3 23 chrY 17743475 17743859 -33769725 + L1P3 LINE L1 2882 3257 -3204 * 1503 205 8 2 chrY 17743866 17744194 -33769390 - L1MA8 LINE L1 -207 5982 5657 90 19 0 0 chrY 17744746 17744850 -33768734 + AT_rich Low_complexity Low_complexity 1 104 0 475 155 47 2 chrY 17744850 17745364 -33768220 + (TA)n Simple_repeat Simple_repeat 1 537 0 203 152 0 0 chrY 17745384 17745417 -33768167 + (TG)n Simple_repeat Simple_repeat 2 34 0 1827 186 12 9 chrY 17746215 17746559 -33767025 - MLT1A1 LTR MaLR -2 363 19 1858 150 13 20 chrY 17746686 17746818 -33766766 + AluSp SINE Alu 1 132 -181 198 0 0 0 chrY 17746818 17746840 -33766744 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1858 150 13 20 chrY 17746840 17747013 -33766571 + AluSp SINE Alu 132 304 -9 1056 235 17 101 chrY 17747363 17747705 -33765879 + MLT1A2 LTR MaLR 1 305 -69 1364 218 14 17 chrY 17747705 17747998 -33765586 - AluJo SINE Alu -20 292 1 1056 235 17 101 chrY 17747998 17748063 -33765521 + MLT1A2 LTR MaLR 305 374 0 664 313 57 31 chrY 17748349 17748736 -33764848 + MLT2C1 LTR ERVL 1 397 0 1720 157 52 52 chrY 17748921 17749220 -33764364 + THE1B LTR MaLR 2 303 -61 2255 114 0 0 chrY 17749220 17749526 -33764058 - AluY SINE Alu -5 306 1 1720 157 52 52 chrY 17749526 17749589 -33763995 + THE1B LTR MaLR 302 364 0 963 240 73 42 chrY 17749837 17750267 -33763317 + MLT1C LTR MaLR 8 377 -13 228 311 68 0 chrY 17750664 17750767 -33762817 + MIR SINE MIR 84 193 -69 1706 186 0 16 chrY 17751082 17751399 -33762185 - AluJb SINE Alu 0 312 1 223 203 29 0 chrY 17753180 17753249 -33760335 + GA-rich Low_complexity Low_complexity 2 72 0 3579 108 162 101 chrY 17753684 17755113 -33758471 + pTR5 LTR ERV1 742 2433 -5 228 303 139 25 chrY 17755448 17755570 -33758014 + MIR SINE MIR 20 155 -107 1654 186 3 3 chrY 17755596 17755891 -33757693 + AluSx SINE Alu 1 295 -17 1842 272 29 27 chrY 17756271 17756965 -33756619 - L1MCb LINE L1 -1787 4777 4083 1833 281 49 14 chrY 17756973 17757169 -33756415 - L1MCb LINE L1 -2383 4181 3993 1513 215 39 21 chrY 17757169 17757550 -33756034 + MLT1B LTR MaLR 3 390 0 1833 281 49 14 chrY 17757550 17758319 -33755265 - L1MCb LINE L1 -2571 3993 3183 1241 224 75 22 chrY 17758325 17758686 -33754898 - LTR25 LTR ERV1 0 794 415 243 206 143 0 chrY 17758657 17758720 -33754864 - MER51A LTR ERV1 -354 280 209 * 507 177 43 0 chrY 17758864 17758974 -33754610 - MER61E LTR ERV1 -484 85 1 1960 266 55 68 chrY 17759004 17760077 -33753507 - L1MCb LINE L1 -3402 3162 2076 5373 138 20 1 chrY 17760077 17761296 -33752288 + L1PA14 LINE L1 4926 6161 0 1960 266 55 68 chrY 17761296 17762300 -33751284 - L1MCb LINE L1 -4488 2076 972 222 37 0 0 chrY 17762300 17762327 -33751257 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1960 266 55 68 chrY 17762327 17762466 -33751118 - L1MCb LINE L1 -5592 972 833 823 70 27 64 chrY 17762480 17762667 -33750917 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1638 274 71 42 chrY 17762673 17763476 -33750108 - L1MCb LINE L1 -5219 826 1 234 128 0 0 chrY 17764491 17764530 -33749054 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 180 77 0 0 chrY 17764551 17764577 -33749007 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2039 129 0 3 chrY 17765890 17766184 -33747400 + AluSp SINE Alu 9 301 -12 201 138 35 17 chrY 17766361 17766419 -33747165 + (TA)n Simple_repeat Simple_repeat 1 59 0 336 159 34 68 chrY 17766472 17766648 -33746936 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 391 156 66 24 chrY 17766526 17766777 -33746807 + (TA)n Simple_repeat Simple_repeat 1 261 0 401 222 72 18 chrY 17766809 17766976 -33746608 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 435 221 54 12 chrY 17766896 17767235 -33746349 + (TA)n Simple_repeat Simple_repeat 1 353 0 187 231 45 6 chrY 17767292 17767448 -33746136 + (TA)n Simple_repeat Simple_repeat 2 163 0 41002 47 23 4 chrY 17767571 17773606 -33739978 + L1PA3 LINE L1 2 6155 0 35 41 0 0 chrY 17773868 17773917 -33739667 + AT_rich Low_complexity Low_complexity 1 49 0 605 239 98 52 chrY 17774214 17774540 -33739044 + MLT1C LTR MaLR 5 345 -122 416 252 0 7 chrY 17774542 17774677 -33738907 + (TATATG)n Simple_repeat Simple_repeat 2 135 0 819 323 98 45 chrY 17775052 17775584 -33738000 - L2 LINE L2 -149 3164 2662 252 0 0 0 chrY 17775584 17775612 -33737972 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 819 323 98 45 chrY 17775612 17775724 -33737860 - L2 LINE L2 -651 2662 2557 1509 147 26 96 chrY 17775724 17776036 -33737548 + AluSx SINE Alu 6 295 -17 819 323 98 45 chrY 17776036 17776574 -33737010 - L2 LINE L2 -756 2557 1898 21 0 0 0 chrY 17776636 17776657 -33736927 + AT_rich Low_complexity Low_complexity 1 21 0 210 283 0 29 chrY 17776671 17776754 -33736830 + A-rich Low_complexity Low_complexity 2 134 0 217 287 96 0 chrY 17777407 17777501 -33736083 - MIR SINE MIR -71 137 35 183 280 8 17 chrY 17777620 17777738 -33735846 + GA-rich Low_complexity Low_complexity 1 117 0 227 170 0 19 chrY 17777918 17777971 -33735613 + GA-rich Low_complexity Low_complexity 3 54 0 413 207 96 22 chrY 17778114 17778249 -33735335 + MLT1A2 LTR MaLR 230 374 0 2118 125 0 3 chrY 17779925 17780237 -33733347 + AluY SINE Alu 1 311 0 365 198 12 0 chrY 17780240 17780326 -33733258 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 242 148 37 0 chrY 17780332 17780386 -33733198 - L1MC4 LINE L1 -1339 6703 6648 435 106 7 5 chrY 17780630 17780700 -33732884 + MSTC LTR MaLR 1 58 -370 673 91 0 20 chrY 17780701 17780800 -33732784 - L1P4 LINE L1 -439 5735 5639 915 198 76 11 chrY 17780997 17781347 -33732237 - LOR1a LTR ERV1 0 497 35 1720 179 7 3 chrY 17781349 17781634 -33731950 + AluSx SINE Alu 1 286 -26 55 16 0 0 chrY 17781644 17781706 -33731878 + AT_rich Low_complexity Low_complexity 1 62 0 269 130 11 54 chrY 17781709 17781801 -33731783 + A-rich Low_complexity Low_complexity 2 89 0 280 152 0 0 chrY 17781812 17781858 -33731726 - LOR1a LTR ERV1 -451 46 1 1327 144 4 8 chrY 17782434 17782677 -33730907 + L1MA2 LINE L1 6057 6298 -6 3211 209 15 11 chrY 17783345 17784080 -33729504 - L1P LINE L1 -1306 4840 4103 5844 113 14 0 chrY 17784082 17785341 -33728243 + L1PA13 LINE L1 4891 6163 0 231 36 0 0 chrY 17785507 17785535 -33728049 + (CA)n Simple_repeat Simple_repeat 2 29 0 880 255 21 108 chrY 17785699 17786071 -33727513 - LTR40b LTR ERVL 0 462 123 737 274 42 11 chrY 17786602 17786792 -33726792 - MER8 DNA MER2_type -36 203 8 41 78 0 0 chrY 17787742 17787832 -33725752 + AT_rich Low_complexity Low_complexity 1 90 0 329 313 111 3 chrY 17787883 17788130 -33725454 + L1ME LINE L1 5397 5675 -446 189 178 0 0 chrY 17788548 17788593 -33724991 + (TG)n Simple_repeat Simple_repeat 2 46 0 5738 111 29 2 chrY 17788741 17789944 -33723640 + L1PA7 LINE L1 4584 5826 -328 1615 112 27 0 chrY 17789944 17789998 -33723586 + AluSp SINE Alu 68 119 -194 369 0 0 0 chrY 17789998 17790039 -33723545 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1615 112 27 0 chrY 17790039 17790207 -33723377 + AluSp SINE Alu 119 296 -17 5738 111 29 2 chrY 17790207 17790543 -33723041 + L1PA7 LINE L1 5826 6152 -2 354 236 40 23 chrY 17790585 17790759 -33722825 + (TA)n Simple_repeat Simple_repeat 1 177 0 558 200 0 32 chrY 17790815 17791000 -33722584 + (TA)n Simple_repeat Simple_repeat 2 180 0 1607 154 97 10 chrY 17791032 17791329 -33722255 + MER4B LTR ERV1 1 323 -287 381 111 111 14 chrY 17791329 17791401 -33722183 - MADE1 DNA Mariner -1 79 1 * 1704 117 10 55 chrY 17791401 17791705 -33721879 + MER4B LTR ERV1 321 610 0 1588 181 53 0 chrY 17793073 17793355 -33720229 + AluSq SINE Alu 11 307 -6 754 202 16 44 chrY 17793571 17793754 -33719830 + MLT1C LTR MaLR 1 178 -289 1465 201 42 0 chrY 17793756 17794045 -33719539 + AluJo SINE Alu 1 301 -11 758 183 12 8 chrY 17794045 17794299 -33719285 + GA-rich Low_complexity Low_complexity 1 255 0 522 273 75 5 chrY 17794401 17794588 -33718996 + MLT1C LTR MaLR 268 467 0 1300 196 59 35 chrY 17794699 17794985 -33718599 + AluJb SINE Alu 3 295 -17 309 220 0 17 chrY 17795041 17795100 -33718484 + AluJ/monomer SINE Alu 235 292 -8 329 311 0 0 chrY 17796101 17796191 -33717393 + L1MC4 LINE L1 6614 6703 -1339 2079 113 3 3 chrY 17796224 17796516 -33717068 - AluY SINE Alu -19 292 1 216 0 0 0 chrY 17796604 17796628 -33716956 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 264 26 0 0 chrY 17797547 17797586 -33715998 + AluY SINE Alu 264 302 0 216 0 0 0 chrY 17797923 17797947 -33715637 + (A)n Simple_repeat Simple_repeat 1 24 0 2734 155 31 26 chrY 17798656 17799199 -33714385 + L1PA15 LINE L1 5620 6165 0 710 261 131 60 chrY 17799360 17799712 -33713872 - MLT1C LTR MaLR -90 377 1 1276 241 10 20 chrY 17800208 17800315 -33713269 - AluJo SINE Alu -21 291 184 3568 119 2 4 chrY 17800315 17800827 -33712757 + MER9 LTR ERVK 1 511 0 1276 241 10 20 chrY 17800827 17801013 -33712571 - AluJo SINE Alu -128 184 1 1675 174 7 0 chrY 17801774 17802050 -33711534 + AluSx SINE Alu 2 279 -33 22 0 0 0 chrY 17802054 17802076 -33711508 + AT_rich Low_complexity Low_complexity 1 22 0 280 395 25 10 chrY 17802213 17802413 -33711171 - MIR SINE MIR -54 208 6 2121 122 3 0 chrY 17802562 17802857 -33710727 + AluSg SINE Alu 1 296 -14 245 51 26 0 chrY 17803199 17803238 -33710346 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1697 184 0 0 chrY 17803239 17803506 -33710078 - AluJo SINE Alu -32 280 14 1332 287 39 53 chrY 17803519 17803967 -33709617 + L1M4 LINE L1 3980 4432 -1714 1902 159 30 0 chrY 17803967 17804269 -33709315 - AluSx SINE Alu -1 311 1 1332 287 39 53 chrY 17804269 17804356 -33709228 + L1M4 LINE L1 4432 4519 -1627 2614 68 3 0 chrY 17804356 17804693 -33708891 + L1PA6 LINE L1 5815 6152 -2 1332 287 39 53 chrY 17804693 17805145 -33708439 + L1M4 LINE L1 4519 4955 -1191 1593 167 80 0 chrY 17805198 17805490 -33708094 - AluSx SINE Alu 0 315 3 662 183 0 51 chrY 17806381 17806518 -33707066 - FLAM_A SINE Alu -2 131 2 195 129 0 0 chrY 17806518 17806549 -33707035 + (A)n Simple_repeat Simple_repeat 1 31 0 25 31 0 0 chrY 17806756 17806788 -33706796 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chrY 17807175 17807210 -33706374 + AT_rich Low_complexity Low_complexity 1 35 0 255 229 25 0 chrY 17807570 17807688 -33705896 + (TA)n Simple_repeat Simple_repeat 1 121 0 239 171 66 13 chrY 17807703 17807779 -33705805 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chrY 17807810 17807832 -33705752 + AT_rich Low_complexity Low_complexity 1 22 0 887 211 32 37 chrY 17807832 17808050 -33705534 + AluJo SINE Alu 1 217 -95 209 192 0 39 chrY 17807953 17807968 -33705616 + (TAAA)n Simple_repeat Simple_repeat 4 18 -35 * 1832 150 26 10 chrY 17807968 17808275 -33705309 + AluSx SINE Alu 1 312 0 209 192 0 39 chrY 17808275 17808311 -33705273 + (TAAA)n Simple_repeat Simple_repeat 18 53 0 204 214 10 78 chrY 17808319 17808380 -33705204 + (TATAA)n Simple_repeat Simple_repeat 1 65 -114 1807 149 21 0 chrY 17808380 17808668 -33704916 - AluSp SINE Alu -9 304 11 204 214 10 78 chrY 17808668 17808761 -33704823 + (TATAA)n Simple_repeat Simple_repeat 65 142 -37 666 80 0 0 chrY 17808761 17808849 -33704735 + L1PA8 LINE L1 6083 6170 -2 204 214 10 78 chrY 17808849 17808885 -33704699 + (TATAA)n Simple_repeat Simple_repeat 142 179 0 * 349 235 22 40 chrY 17808855 17809186 -33704398 + (TTATA)n Simple_repeat Simple_repeat 1 324 0 540 161 12 0 chrY 17809938 17810019 -33703565 - AluSc SINE Alu -28 281 200 766 209 7 7 chrY 17810434 17810587 -33702997 - L1PB4 LINE L1 -1 6155 6003 2740 173 37 4 chrY 17810863 17811372 -33702212 - L1PB4 LINE L1 -1 6155 5630 2239 119 0 0 chrY 17811527 17811822 -33701762 - AluSc SINE Alu -14 295 1 1746 174 3 3 chrY 17812104 17812398 -33701186 + AluSc SINE Alu 6 299 -10 254 117 6 12 chrY 17812485 17812532 -33701052 - MLT2D LTR ERVL -5 409 380 1655 206 0 25 chrY 17812532 17812852 -33700732 + AluSx SINE Alu 1 312 0 197 117 66 44 chrY 17812864 17813001 -33700583 + (TAGA)n Simple_repeat Simple_repeat 3 142 0 1468 246 84 35 chrY 17813001 17813510 -33700074 - MLT2B3 LTR ERVL -20 534 1 1260 237 29 7 chrY 17813808 17814087 -33699497 + AluJb SINE Alu 1 285 -27 1589 209 0 16 chrY 17814779 17815095 -33698489 - AluJo SINE Alu 0 312 2 2036 160 38 23 chrY 17815509 17815917 -33697667 + Tigger2 DNA MER2_type 1 2718 0 1594 153 0 52 chrY 17816105 17816392 -33697192 + AluJo SINE Alu 2 273 -39 333 100 0 0 chrY 17816393 17816443 -33697141 + (GA)n Simple_repeat Simple_repeat 1 50 0 267 31 0 0 chrY 17816472 17816517 -33697067 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 267 31 0 0 chrY 17816517 17816549 -33697035 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 1812 169 0 20 chrY 17816578 17816880 -33696704 - AluSg SINE Alu -14 296 1 1579 159 64 27 chrY 17817148 17817443 -33696141 - AluSx SINE Alu -6 306 1 29 47 0 0 chrY 17817767 17817810 -33695774 + AT_rich Low_complexity Low_complexity 1 43 0 661 253 54 0 chrY 17818137 17818323 -33695261 - L1MB1 LINE L1 -77 6112 5917 406 136 23 45 chrY 17818333 17818421 -33695163 - MER21A LTR ERV1 -9 922 837 1352 56 0 0 chrY 17818432 17818594 -33694990 - MER4E LTR ERV1 -8 758 597 1148 196 98 94 chrY 17818596 17819044 -33694540 - LTR7 LTR ERV1 0 450 1 2828 164 13 13 chrY 17819044 17819660 -33693924 - HERVH LTR ERV1 0 7713 7157 * 13384 132 16 3 chrY 17819653 17822031 -33691553 - HERVH LTR ERV1 -1697 6016 3672 1072 228 9 18 chrY 17822067 17822286 -33691298 - MER21A LTR ERV1 -166 765 549 432 138 110 0 chrY 17822287 17822396 -33691188 + HERVH LTR ERV1 5850 5970 -1743 3074 133 59 24 chrY 17822435 17822976 -33690608 + MER4B LTR ERV1 5 564 -46 722 175 21 26 chrY 17823018 17823337 -33690247 - MER21B LTR ERV1 -451 412 5 458 63 2 6 chrY 17823352 17823416 -33690168 + L1MB1 LINE L1 6108 6172 -8 4077 171 40 25 chrY 17823419 17824177 -33689407 - MER4E LTR ERV1 0 779 11 315 0 0 0 chrY 17824197 17824232 -33689352 + (CA)n Simple_repeat Simple_repeat 2 36 0 702 175 81 6 chrY 17824246 17824314 -33689270 + L1MA10 LINE L1 6163 6224 -110 2372 133 204 65 chrY 17824314 17824616 -33688968 + LTR43 LTR ERV1 1 260 -342 1684 170 10 7 chrY 17824616 17824904 -33688680 - AluSg SINE Alu -21 289 1 2372 133 204 65 chrY 17824904 17825126 -33688458 + LTR43 LTR ERV1 260 598 -4 702 175 81 6 chrY 17825126 17825217 -33688367 + L1MA10 LINE L1 6224 6334 0 22 0 0 0 chrY 17825980 17826002 -33687582 + AT_rich Low_complexity Low_complexity 1 22 0 228 188 0 21 chrY 17826822 17826870 -33686714 + MLT1E LTR MaLR 95 141 -513 630 212 30 109 chrY 17826909 17827169 -33686415 + MLT1E LTR MaLR 207 427 -166 1475 196 7 4 chrY 17827177 17827457 -33686127 + AluJb SINE Alu 6 286 -26 2015 138 0 0 chrY 17827481 17827771 -33685813 + AluSg SINE Alu 1 290 -20 373 84 28 0 chrY 17827777 17827848 -33685736 + (CATAA)n Simple_repeat Simple_repeat 3 75 0 2309 147 9 64 chrY 17828404 17828840 -33684744 + L1PA13 LINE L1 5733 6144 -19 1702 186 0 3 chrY 17829116 17829417 -33684167 - AluJb SINE Alu -12 300 1 405 0 0 0 chrY 17829945 17829990 -33683594 + (CA)n Simple_repeat Simple_repeat 2 46 0 241 323 42 21 chrY 17830062 17830158 -33683426 + MIR SINE MIR 16 113 -95 1541 191 7 40 chrY 17830211 17830510 -33683074 + AluJb SINE Alu 1 289 -23 6598 135 13 143 chrY 17830510 17832157 -33681427 + L1PA7 LINE L1 865 2296 -3850 4880 155 44 16 chrY 17832157 17833124 -33680460 + MER11B LTR ERVK 1 1162 -104 16997 129 11 11 chrY 17833124 17834624 -33678960 + L1PA7 LINE L1 2716 4215 -1939 1659 128 13 74 chrY 17834624 17834936 -33678648 + AluSc SINE Alu 10 302 -7 16997 129 11 11 chrY 17834936 17835752 -33677832 + L1PA7 LINE L1 4215 5030 -1124 1697 151 89 0 chrY 17835752 17836023 -33677561 + AluSc SINE Alu 1 295 -14 16997 129 11 11 chrY 17836023 17836402 -33677182 + L1PA7 LINE L1 5030 5408 -746 3763 108 6 6 chrY 17836402 17836913 -33676671 - MER9 LTR ERVK 0 511 1 16997 129 11 11 chrY 17836913 17837639 -33675945 + L1PA7 LINE L1 5407 6154 0 27 29 0 0 chrY 17837794 17837828 -33675756 + AT_rich Low_complexity Low_complexity 1 34 0 1251 265 99 32 chrY 17838066 17838572 -33675012 + MLT1H LTR MaLR 1 540 -9 3509 152 42 65 chrY 17839015 17839372 -33674212 + L1PB4 LINE L1 5402 5766 -390 193 29 29 29 chrY 17839372 17839407 -33674177 + (TA)n Simple_repeat Simple_repeat 1 35 0 3509 152 42 65 chrY 17839407 17839789 -33673795 + L1PB4 LINE L1 5766 6125 -31 1560 156 55 7 chrY 17839789 17840064 -33673520 + AluSx SINE Alu 13 300 -12 3509 152 42 65 chrY 17840064 17840092 -33673492 + L1PB4 LINE L1 6125 6152 -4 1257 206 34 44 chrY 17840599 17840895 -33672689 - AluJo SINE Alu -19 293 1 182 300 210 25 chrY 17840989 17841189 -33672395 - L3 LINE CR1 -11 1566 1330 359 329 41 14 chrY 17841582 17841728 -33671856 - MER5A DNA MER1_type -10 179 30 1433 178 54 102 chrY 17841806 17842120 -33671464 - AluJb SINE Alu -3 299 1 1160 246 39 11 chrY 17842276 17842374 -33671210 + AluJo SINE Alu 23 117 -195 494 0 33 0 chrY 17842374 17842435 -33671149 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1160 246 39 11 chrY 17842435 17842616 -33670968 + AluJo SINE Alu 117 310 -2 1917 159 0 0 chrY 17843808 17844098 -33669486 - AluSx SINE Alu -20 292 3 1544 181 47 0 chrY 17844468 17844744 -33668840 - AluSx SINE Alu -12 300 12 1772 177 0 19 chrY 17845055 17845371 -33668213 + AluJb SINE Alu 1 310 -2 1287 211 7 21 chrY 17845823 17846135 -33667449 + AluJo SINE Alu 1 308 0 1737 149 7 46 chrY 17846543 17846712 -33666872 - AluSx SINE Alu -17 295 142 2001 96 0 7 chrY 17846712 17846982 -33666602 - AluY SINE Alu -8 303 36 1737 149 7 46 chrY 17846982 17847114 -33666470 - AluSx SINE Alu -170 142 6 1454 204 7 7 chrY 17847646 17847935 -33665649 - AluJo SINE Alu -11 301 13 1642 204 0 7 chrY 17848335 17848639 -33664945 - AluJo SINE Alu -10 302 1 213 301 150 30 chrY 17849211 17849344 -33664240 + L2 LINE L2 3130 3278 -35 22 35 0 0 chrY 17849344 17849373 -33664211 + AT_rich Low_complexity Low_complexity 1 29 0 1801 159 11 0 chrY 17849422 17849705 -33663879 - AluSg SINE Alu -19 291 6 189 0 0 0 chrY 17850151 17850172 -33663412 + (CA)n Simple_repeat Simple_repeat 2 22 0 1870 139 33 3 chrY 17850246 17850548 -33663036 + AluSx SINE Alu 1 311 -1 211 238 0 0 chrY 17850555 17850597 -33662987 + A-rich Low_complexity Low_complexity 1 42 0 945 229 4 71 chrY 17850597 17850850 -33662734 - MER67D LTR ERV1 -204 310 75 2049 172 19 61 chrY 17850852 17851067 -33662517 + L1MA4 LINE L1 5847 6070 -230 1531 177 0 0 chrY 17851067 17851316 -33662268 - AluJo SINE Alu -17 295 47 2049 172 19 61 chrY 17851316 17851572 -33662012 + L1MA4 LINE L1 6070 6298 -2 291 183 50 0 chrY 17851588 17851648 -33661936 - MER67D LTR ERV1 -451 63 1 2350 155 17 8 chrY 17851688 17852049 -33661535 + THE1B LTR MaLR 1 364 0 1579 184 33 7 chrY 17852108 17852412 -33661172 - AluJb SINE Alu 0 312 1 2007 129 0 10 chrY 17852641 17852936 -33660648 - AluSc SINE Alu -15 294 3 26 30 0 0 chrY 17852946 17852979 -33660605 + AT_rich Low_complexity Low_complexity 1 33 0 251 256 13 0 chrY 17852980 17852994 -33660590 + (TCTA)n Simple_repeat Simple_repeat 2 14 -66 2042 130 3 0 chrY 17852994 17853279 -33660305 - AluSc SINE Alu -23 286 1 251 256 13 0 chrY 17853279 17853342 -33660242 + (TCTA)n Simple_repeat Simple_repeat 14 80 0 223 364 42 8 chrY 17853508 17853626 -33659958 + MIR3 SINE MIR 83 204 -4 1058 265 45 57 chrY 17854080 17854870 -33658714 + L1MB2 LINE L1 5440 5923 -248 2937 194 33 20 chrY 17854134 17854336 -33659248 + L1PB4 LINE L1 5482 5680 -476 1737 169 10 17 chrY 17854336 17854637 -33658947 + AluSq SINE Alu 1 299 -14 2937 194 33 20 chrY 17854637 17855068 -33658516 + L1PB4 LINE L1 5680 6123 -33 2094 130 3 0 chrY 17855085 17855378 -33658206 - AluSc SINE Alu -15 294 1 1959 160 0 0 chrY 17855670 17855970 -33657614 - AluSq SINE Alu -13 300 1 1476 237 10 10 chrY 17856239 17856539 -33657045 + AluJo SINE Alu 1 300 -2 393 179 0 0 chrY 17856571 17856655 -33656929 + GA-rich Low_complexity Low_complexity 2 85 0 619 271 22 11 chrY 17856926 17857107 -33656477 - MLT1C LTR MaLR -1 466 284 335 200 62 0 chrY 17857103 17857183 -33656401 + AluJ/FRAM SINE Alu 218 302 0 * 215 150 25 0 chrY 17857198 17857238 -33656346 + GA-rich Low_complexity Low_complexity 1 41 0 807 266 89 58 chrY 17857428 17857856 -33655728 + LTR8A LTR ERV1 287 727 0 392 290 45 25 chrY 17857859 17858059 -33655525 - HAL1 LINE L1 -264 2243 2040 1760 153 58 37 chrY 17858062 17858356 -33655228 - AluSq SINE Alu -13 300 1 922 200 0 23 chrY 17858431 17858606 -33654978 - AluSx SINE Alu -141 171 1 206 61 0 30 chrY 17860081 17860092 -33653492 + (GAAA)n Simple_repeat Simple_repeat 2 12 -21 1762 169 16 22 chrY 17860092 17860406 -33653178 + AluSx SINE Alu 1 312 0 206 61 0 30 chrY 17860406 17860427 -33653157 + (GAAA)n Simple_repeat Simple_repeat 12 33 0 1738 144 0 22 chrY 17860516 17860787 -33652797 - AluSc SINE Alu -44 265 1 1531 235 10 0 chrY 17860913 17861215 -33652369 - AluJb SINE Alu -7 305 1 430 46 31 0 chrY 17861369 17861434 -33652150 - AluY SINE Alu -3 308 242 2743 188 45 61 chrY 17861437 17862186 -33651398 + Tigger2 DNA MER2_type 8 744 -1974 780 237 48 33 chrY 17862210 17862480 -33651104 + Tigger2 DNA MER2_type 2435 2708 -10 4000 79 12 1 chrY 17863301 17864300 -33649284 + L1PA7 LINE L1 4797 5803 -351 2177 107 7 0 chrY 17865008 17865308 -33648276 + AluSx SINE Alu 1 302 -10 2514 91 0 3 chrY 17866846 17867196 -33646388 + L1PA7 LINE L1 5790 6138 -16 2094 125 4 0 chrY 17867390 17867670 -33645914 + AluSc SINE Alu 5 285 -24 1738 155 4 4 chrY 17868612 17868883 -33644701 - AluSx SINE Alu -5 307 37 12331 294 29 41 chrY 17869942 17875909 -33637675 + HERV3 LTR ERV1 2125 8020 -715 1771 281 30 46 chrY 17875934 17876646 -33636938 + HERV3 LTR ERV1 7721 8420 -6 467 231 107 61 chrY 17876743 17877152 -33636432 + LTR30 LTR ERV1 241 596 0 360 286 50 0 chrY 17877271 17877411 -33636173 - L1MA10 LINE L1 -8 6326 6180 1730 187 10 3 chrY 17878459 17878586 -33634998 + AluSx SINE Alu 1 126 -186 240 35 0 0 chrY 17878586 17878615 -33634969 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 1730 187 10 3 chrY 17878615 17878792 -33634792 + AluSx SINE Alu 126 307 -5 21 0 0 0 chrY 17878863 17878884 -33634700 + AT_rich Low_complexity Low_complexity 1 21 0 2123 132 0 0 chrY 17879070 17879373 -33634211 - AluSx SINE Alu -9 303 1 1158 289 135 33 chrY 17879714 17882001 -33631583 + L1MC4a LINE L1 107 2599 -3616 9336 29 0 2 chrY 17882021 17883203 -33630381 - L1PA2 LINE L1 -755 5391 4213 6528 16 3 9 chrY 17883203 17883964 -33629620 + L1PA2 LINE L1 5395 6155 0 1890 263 134 14 chrY 17883978 17885258 -33628326 + L1MC4a LINE L1 2627 4060 -2155 866 215 35 27 chrY 17885276 17885537 -33628047 + L1MC4a LINE L1 5411 5673 -638 1419 220 26 20 chrY 17886184 17886489 -33627095 + AluJo SINE Alu 1 307 -5 231 204 0 0 chrY 17886536 17886585 -33626999 + GA-rich Low_complexity Low_complexity 3 51 0 1993 112 0 0 chrY 17887305 17887563 -33626021 + AluSg SINE Alu 50 307 -3 464 304 71 49 chrY 17887689 17888054 -33625530 + L1MC4a LINE L1 5664 6036 -1841 323 337 6 30 chrY 17888079 17888248 -33625336 + (TG)n Simple_repeat Simple_repeat 2 166 0 260 376 0 0 chrY 17888275 17888432 -33625152 + (TG)n Simple_repeat Simple_repeat 2 158 0 1722 162 50 0 chrY 17888563 17888841 -33624743 + AluSq SINE Alu 3 294 -19 216 97 0 0 chrY 17888843 17888874 -33624710 + (TA)n Simple_repeat Simple_repeat 1 31 0 1562 212 20 3 chrY 17888998 17889290 -33624294 - AluJo SINE Alu -3 309 13 26 0 0 0 chrY 17889308 17889334 -33624250 + AT_rich Low_complexity Low_complexity 1 26 0 21 89 0 0 chrY 17890085 17890141 -33623443 + AT_rich Low_complexity Low_complexity 1 56 0 368 263 24 62 chrY 17890236 17890472 -33623112 - L1MC5 LINE L1 -1131 6677 6476 265 259 37 19 chrY 17890666 17890774 -33622810 - L1MA10 LINE L1 -8 6326 6217 1800 254 54 7 chrY 17891090 17891666 -33621918 - Tigger6 DNA MER2_type -3 1594 992 355 146 18 0 chrY 17891692 17891747 -33621837 + AluJ/FRAM SINE Alu 228 283 -19 517 268 88 50 chrY 17891750 17892191 -33621393 + L1MD2 LINE L1 2258 2715 -3431 236 229 97 69 chrY 17892186 17892292 -33621292 + L1MD2 LINE L1 3504 3617 -2529 * 1458 217 0 43 chrY 17892292 17892615 -33620969 + AluJo SINE Alu 1 309 -3 236 229 97 69 chrY 17892615 17892652 -33620932 + L1MD2 LINE L1 3617 3651 -2495 605 131 30 10 chrY 17892661 17892760 -33620824 - U6 snRNA snRNA -6 101 1 596 273 45 17 chrY 17892762 17893051 -33620533 + L1MD2 LINE L1 3639 3935 -2211 201 176 0 0 chrY 17893105 17893139 -33620445 + (TA)n Simple_repeat Simple_repeat 1 34 0 1288 283 69 26 chrY 17893154 17893994 -33619590 + L1MD2 LINE L1 4288 5163 -983 1737 208 87 105 chrY 17894022 17894184 -33619400 + L1MD2 LINE L1 5383 5546 -696 2400 96 0 0 chrY 17894184 17894487 -33619097 - AluSx SINE Alu -9 303 1 1737 208 87 105 chrY 17894487 17895200 -33618384 + L1MD2 LINE L1 5546 6242 0 28 0 0 0 chrY 17895476 17895504 -33618080 + AT_rich Low_complexity Low_complexity 1 28 0 1238 224 23 20 chrY 17895751 17896064 -33617520 + L1M4 LINE L1 2466 2785 -3361 1955 145 10 0 chrY 17896064 17896378 -33617206 + AluSx SINE Alu 1 317 0 1238 224 23 20 chrY 17896378 17896459 -33617125 + L1M4 LINE L1 2785 2864 -3282 1344 215 3 46 chrY 17896495 17896779 -33616805 + AluJo SINE Alu 11 282 -30 22 0 0 0 chrY 17896780 17896802 -33616782 + AT_rich Low_complexity Low_complexity 1 22 0 2167 263 42 18 chrY 17896811 17897706 -33615878 + L1M4 LINE L1 2895 3811 -2335 897 296 85 10 chrY 17898032 17898444 -33615140 - MLT1J1 LTR MaLR -3 443 1 298 325 133 13 chrY 17898770 17898921 -33614663 - MIR3 SINE MIR -5 203 35 4437 146 70 5 chrY 17898970 17899880 -33613704 - L1PA3 LINE L1 -4 6151 5183 1826 174 20 0 chrY 17900033 17900332 -33613252 - AluSx SINE Alu -7 305 1 192 226 323 11 chrY 17900413 17900506 -33613078 + L2 LINE L2 3192 3313 0 1860 126 11 0 chrY 17901209 17901478 -33612106 + AluSx SINE Alu 34 305 -7 1580 210 7 0 chrY 17901607 17901898 -33611686 + AluJb SINE Alu 1 293 -19 275 276 160 31 chrY 17902486 17902942 -33610642 + L1M4 LINE L1 4418 4932 -1214 364 294 119 23 chrY 17903304 17903789 -33609795 + L1M1 LINE L1 5259 5797 -391 1119 252 73 9 chrY 17903865 17904317 -33609267 - L1M4 LINE L1 -1252 4894 4414 1254 234 54 22 chrY 17904320 17904598 -33608986 - AluJo SINE Alu -25 287 1 1176 222 89 14 chrY 17904855 17905499 -33608085 - L1MC/D LINE L1 -554 5688 4998 489 291 83 19 chrY 17905572 17905933 -33607651 - L1MC/D LINE L1 -1313 4833 4450 365 319 22 16 chrY 17905976 17906158 -33607426 - L1MC/D LINE L1 -1773 4373 4191 1053 152 0 6 chrY 17906160 17906325 -33607259 - AluSg/x SINE Alu -14 296 133 1756 274 54 9 chrY 17906333 17906622 -33606962 - L1MC/D LINE L1 -1949 4197 3922 249 33 0 0 chrY 17906622 17906652 -33606932 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1756 274 54 9 chrY 17906652 17907139 -33606445 - L1MC/D LINE L1 -2224 3922 3386 231 298 141 4 chrY 17907152 17907394 -33606190 + L1MEc LINE L1 815 1089 -5307 1890 140 21 58 chrY 17907394 17907772 -33605812 + THE1C LTR MaLR 1 364 -11 607 281 82 11 chrY 17907778 17908145 -33605439 + L1MEc LINE L1 1084 1476 -4920 271 247 93 37 chrY 17908134 17908296 -33605288 + L1M4 LINE L1 4438 4608 -1538 * 28496 47 42 2 chrY 17908304 17912122 -33601462 + L1P LINE L1 6 3953 -2193 1044 32 0 0 chrY 17912122 17912233 -33601351 + L1PA2 LINE L1 6032 6155 0 580 264 15 10 chrY 17912233 17912406 -33601178 + L1M4 LINE L1 4600 4776 -1370 1775 141 34 7 chrY 17912409 17912706 -33600878 + AluSx SINE Alu 3 307 -5 929 176 18 0 chrY 17912714 17912884 -33600700 + HUERS-P3 LTR ERV1 7155 7327 -1592 * 2096 111 35 8 chrY 17912875 17913252 -33600332 - Harlequin LTR ERV1 -4697 2199 1813 268 185 152 87 chrY 17913252 17913344 -33600240 + LTR8 LTR ERV1 156 253 -438 1604 106 41 9 chrY 17913350 17913725 -33599859 - Harlequin LTR ERV1 -5182 1714 1284 * 3477 157 24 25 chrY 17913723 17914361 -33599223 - Harlequin LTR ERV1 -7287 1339 703 405 277 82 29 chrY 17914751 17914957 -33598627 - Harlequin LTR ERV1 -7286 499 283 886 233 79 49 chrY 17914994 17915299 -33598285 - Harlequin LTR ERV1 -6335 314 1 1663 152 112 65 chrY 17915304 17915733 -33597851 - LTR10A LTR ERV1 -61 548 100 1327 193 13 4 chrY 17915773 17916006 -33597578 + HUERS-P3 LTR ERV1 8684 8918 -1 3410 160 64 5 chrY 17916006 17916613 -33596971 + LTR9B LTR ERV1 1 643 -1 430 326 112 40 chrY 17917396 17917743 -33595841 - L2 LINE L2 -4 3268 2897 288 244 0 0 chrY 17918420 17918510 -33595074 + (TGGA)n Simple_repeat Simple_repeat 4 93 0 1711 186 119 76 chrY 17918511 17919023 -33594561 + LTR10A LTR ERV1 15 548 -61 678 203 7 29 chrY 17919037 17919311 -33594273 + (TGGA)n Simple_repeat Simple_repeat 1 267 0 5634 115 86 25 chrY 17919332 17920810 -33592774 - pTR5 LTR ERV1 0 2438 741 340 181 39 8 chrY 17920810 17920937 -33592647 + (TGGA)n Simple_repeat Simple_repeat 1 131 0 280 241 23 35 chrY 17920985 17921072 -33592512 + (TGGG)n Simple_repeat Simple_repeat 3 88 0 400 318 71 15 chrY 17921527 17921725 -33591859 - L2 LINE L2 -188 3084 2876 336 273 23 0 chrY 17921803 17921891 -33591693 - MIR SINE MIR -109 153 64 485 311 55 41 chrY 17922484 17922777 -33590807 - L2 LINE L2 -22 3291 2995 287 263 0 0 chrY 17922784 17922841 -33590743 + AluS SINE Alu 6 62 -238 * 448 206 19 19 chrY 17922840 17922947 -33590637 + MLT1E1 LTR MaLR 74 180 -474 1418 146 21 106 chrY 17922947 17923277 -33590307 + AluYb8 SINE Alu 1 302 -16 197 267 0 0 chrY 17923304 17923349 -33590235 - L2 LINE L2 -346 2967 2923 27 49 0 0 chrY 17923899 17923940 -33589644 + AT_rich Low_complexity Low_complexity 1 41 0 1549 195 10 0 chrY 17923947 17924255 -33589329 - AluJo SINE Alu -1 311 1 200 301 57 81 chrY 17924255 17924370 -33589214 + MIR SINE MIR 21 134 -128 231 21 146 0 chrY 17924374 17924422 -33589162 + (CATTT)n Simple_repeat Simple_repeat 3 57 0 1763 176 0 13 chrY 17924422 17924728 -33588856 - AluSx SINE Alu -10 302 1 28 0 0 0 chrY 17924729 17924757 -33588827 + AT_rich Low_complexity Low_complexity 1 28 0 1427 194 16 32 chrY 17924786 17925100 -33588484 - AluSx SINE Alu -2 310 2 733 204 8 0 chrY 17925107 17925239 -33588345 - FLAM_A SINE Alu 0 133 1 685 230 7 0 chrY 17925290 17925429 -33588155 - MIR SINE MIR -52 210 71 243 111 204 19 chrY 17925657 17925711 -33587873 - Tigger2 DNA MER2_type -14 2704 2641 1429 169 50 4 chrY 17925711 17925990 -33587594 + AluSx SINE Alu 1 292 -20 827 178 18 75 chrY 17925991 17926230 -33587354 + L1ME3A LINE L1 5599 5827 -343 562 224 33 26 chrY 17927060 17927212 -33586372 + FRAM SINE Alu 20 172 -4 1336 170 25 14 chrY 17927317 17927594 -33585990 + L1MB3 LINE L1 5874 6153 -30 1212 172 0 0 chrY 17927598 17927802 -33585782 - AluJb SINE Alu -103 209 6 1710 156 33 0 chrY 17928458 17928784 -33584800 + AluSx SINE Alu 1 335 0 519 181 63 39 chrY 17928850 17928977 -33584607 + FLAM_C SINE Alu 1 130 -3 909 235 84 32 chrY 17929102 17929387 -33584197 + MER58B DNA MER1_type 27 326 -15 304 241 27 45 chrY 17929475 17929587 -33583997 + HAL1 LINE L1 1400 1509 -998 741 236 63 17 chrY 17930150 17930387 -33583197 + L1MB7 LINE L1 5912 6159 -25 314 206 9 47 chrY 17930407 17930514 -33583070 + L1MEc LINE L1 758 860 -5536 334 219 0 125 chrY 17930537 17930633 -33582951 + L1MEc LINE L1 851 930 -5466 1755 129 26 4 chrY 17930633 17930928 -33582656 + AluSx SINE Alu 5 305 0 334 219 0 125 chrY 17930928 17930958 -33582626 + L1MEc LINE L1 930 962 -5434 578 254 40 89 chrY 17931070 17931318 -33582266 - MER21B LTR ERV1 -615 248 13 1305 167 22 107 chrY 17931355 17931673 -33581911 + AluJb SINE Alu 1 291 -11 857 191 0 42 chrY 17931675 17931864 -33581720 - AluJo SINE Alu -102 210 30 1927 148 0 10 chrY 17932027 17932331 -33581253 - AluSx SINE Alu -11 301 1 6987 72 29 0 chrY 17932443 17933315 -33580269 + MER11D LTR ERVK 1 897 0 355 214 18 71 chrY 17933415 17933527 -33580057 + MLT1H LTR MaLR 75 180 -369 2966 249 65 32 chrY 17933619 17933780 -33579804 + L1M4 LINE L1 3763 3917 -2229 1487 177 0 0 chrY 17933780 17934023 -33579561 + AluSx SINE Alu 1 243 -69 2966 249 65 32 chrY 17934023 17934882 -33578702 + L1M4 LINE L1 3917 4825 -1321 1726 144 0 56 chrY 17934882 17935201 -33578383 + AluJo SINE Alu 1 301 -11 2966 249 65 32 chrY 17935201 17935278 -33578306 + L1M4 LINE L1 4825 4898 -1248 316 279 178 27 chrY 17935277 17935496 -33578088 + L1ME1 LINE L1 5910 6161 -5 * 354 183 131 59 chrY 17935568 17935721 -33577863 - MIR SINE MIR -15 247 84 540 229 0 50 chrY 17936069 17936209 -33577375 + FLAM_C SINE Alu 1 133 0 1988 227 21 42 chrY 17936517 17936566 -33577018 - LTR10D LTR ERV1 0 513 464 2611 30 0 0 chrY 17936566 17936866 -33576718 - AluY SINE Alu -11 300 1 1988 227 21 42 chrY 17936866 17937340 -33576244 - LTR10D LTR ERV1 -49 464 1 444 247 0 0 chrY 17938078 17938175 -33575409 - AluJb SINE Alu -8 304 208 222 37 0 0 chrY 17938216 17938243 -33575341 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 480 189 66 0 chrY 17939154 17939260 -33574324 - AluSc SINE Alu 0 309 197 758 185 0 0 chrY 17939507 17939637 -33573947 + AluJ SINE Alu 1 130 -172 1378 179 16 29 chrY 17939901 17940208 -33573376 + AluJb SINE Alu 1 303 -9 1135 224 0 8 chrY 17941776 17942026 -33571558 + AluJo SINE Alu 1 248 -64 1759 122 4 11 chrY 17942026 17942289 -33571295 - LTR10A LTR ERV1 -116 493 233 21 0 0 0 chrY 17942289 17942310 -33571274 + AT_rich Low_complexity Low_complexity 1 21 0 817 151 34 1 chrY 17942672 17942834 -33570750 + L1MD3 LINE L1 7534 7791 -204 514 247 107 0 chrY 17942966 17943116 -33570468 + MLT1D LTR MaLR 1 166 -460 790 190 6 25 chrY 17943159 17943317 -33570267 + AluJ SINE Alu 137 291 -21 925 223 98 19 chrY 17943320 17943585 -33569999 + MLT1D LTR MaLR 220 505 0 2171 127 0 0 chrY 17944863 17945170 -33568414 - AluSg SINE Alu -3 307 1 199 228 70 0 chrY 17946045 17946102 -33567482 + L2 LINE L2 1682 1742 -1572 1227 175 50 56 chrY 17946421 17946522 -33567062 + AluJb SINE Alu 1 101 -211 2000 129 7 7 chrY 17946522 17946832 -33566752 - AluSg SINE Alu 0 310 1 1227 175 50 56 chrY 17946832 17947033 -33566551 + AluJb SINE Alu 101 301 -11 983 187 241 0 chrY 17947434 17947675 -33565909 + AluSx SINE Alu 1 299 -3 1768 120 76 0 chrY 17947768 17948044 -33565540 + AluSx SINE Alu 1 297 -15 23 0 0 0 chrY 17948155 17948178 -33565406 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chrY 17949374 17949397 -33564187 + (CA)n Simple_repeat Simple_repeat 2 24 0 2164 100 3 10 chrY 17949879 17950190 -33563394 + AluY SINE Alu 1 309 -2 940 227 0 0 chrY 17951917 17952115 -33561469 + AluJo SINE Alu 23 220 -92 301 221 73 0 chrY 17952159 17952227 -33561357 + L1MCa LINE L1 1996 2068 -4358 639 209 9 0 chrY 17952251 17952366 -33561218 + FRAM SINE Alu 1 114 -62 853 204 33 38 chrY 17952367 17952578 -33561006 + AluJo SINE Alu 86 295 -17 982 189 92 0 chrY 17952655 17952872 -33560712 - AluJb SINE Alu -73 239 3 1672 149 9 44 chrY 17952949 17953265 -33560319 + AluSq SINE Alu 1 305 -8 866 198 6 0 chrY 17953397 17953559 -33560025 - AluJo SINE Alu -30 282 120 5369 99 38 9 chrY 17953610 17954366 -33559218 + LTR17 LTR ERV1 2 779 -1 8692 101 11 16 chrY 17954367 17956322 -33557262 + HERV17 LTR ERV1 1 2016 -6610 * 22438 80 3 3 chrY 17956305 17958135 -33555449 + HERV17 LTR ERV1 2430 4259 -4367 240 35 0 0 chrY 17958135 17958164 -33555420 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 1937 138 0 0 chrY 17958164 17958447 -33555137 - AluY SINE Alu -28 283 1 22438 80 3 3 chrY 17958447 17960113 -33553471 + HERV17 LTR ERV1 4257 6019 -2607 2084 115 14 3 chrY 17960124 17960419 -33553165 + HERV17 LTR ERV1 8329 8626 0 5601 104 45 7 chrY 17960419 17961170 -33552414 + LTR17 LTR ERV1 1 780 0 1132 205 9 0 chrY 17961320 17961530 -33552054 - L1PA16 LINE L1 -9 6157 5946 201 354 10 0 chrY 17961992 17962091 -33551493 + (CAT)n Simple_repeat Simple_repeat 2 101 0 507 130 33 22 chrY 17962131 17962223 -33551361 + MER4A LTR ERV1 4 96 -568 1595 172 12 50 chrY 17962239 17962577 -33551007 + MER4A LTR ERV1 340 664 0 218 164 27 41 chrY 17962727 17962800 -33550784 + (TTTG)n Simple_repeat Simple_repeat 4 75 0 1591 173 94 24 chrY 17963775 17964060 -33549524 + MLT1A1 LTR MaLR 1 313 -52 1190 140 60 30 chrY 17964060 17964295 -33549289 + MER75B DNA T2_type 2 243 0 1591 173 94 24 chrY 17964295 17964339 -33549245 + MLT1A1 LTR MaLR 313 353 -12 846 221 5 48 chrY 17964712 17964920 -33548664 + MER20 DNA MER1_type 1 199 -20 1210 137 0 0 chrY 17964920 17965136 -33548448 + AluY SINE Alu 130 345 0 1614 175 3 69 chrY 17965376 17965573 -33548011 - AluJo SINE Alu -1 311 143 1535 233 0 0 chrY 17965573 17965861 -33547723 - AluSx SINE Alu -24 288 1 1614 175 3 69 chrY 17965861 17965995 -33547589 - AluJo SINE Alu -169 143 2 1338 214 81 43 chrY 17966038 17966459 -33547125 - MLT1C LTR MaLR -8 459 23 629 242 103 70 chrY 17966489 17966679 -33546905 - MLT1C LTR MaLR -122 345 138 2211 165 8 22 chrY 17966679 17967048 -33546536 + THE1B LTR MaLR 1 364 0 629 242 103 70 chrY 17967048 17967187 -33546397 - MLT1C LTR MaLR -329 138 5 384 215 102 136 chrY 17967198 17967551 -33546033 - MLT1C LTR MaLR -119 348 8 1759 169 14 0 chrY 17967666 17967989 -33545595 - AluSx SINE Alu 0 327 1 1441 268 3 5 chrY 17968172 17968542 -33545042 + L1MB7 LINE L1 5632 6000 -184 750 217 13 0 chrY 17968552 17968704 -33544880 - L1MB7 LINE L1 -16 6168 6015 261 122 24 0 chrY 17968707 17968748 -33544836 + L1MB7 LINE L1 6052 6093 -91 * 1258 220 89 3 chrY 17968723 17969037 -33544547 + L1MB5 LINE L1 5826 6166 -8 950 246 71 16 chrY 17969124 17969376 -33544208 + AluJo SINE Alu 10 275 -37 1113 236 65 8 chrY 17969975 17970238 -33543346 - AluJo SINE Alu -30 282 5 554 270 68 6 chrY 17970396 17970559 -33543025 + MLT1B LTR MaLR 1 173 -217 255 125 0 0 chrY 17970575 17970615 -33542969 + (TC)n Simple_repeat Simple_repeat 1 40 0 692 242 43 5 chrY 17970615 17970801 -33542783 - L1MB1 LINE L1 -1 6167 5975 707 287 0 0 chrY 17970856 17971037 -33542547 + MLT1B LTR MaLR 208 388 -2 1845 167 120 29 chrY 17971105 17971489 -33542095 - MSTA LTR MaLR -7 421 3 2266 223 25 8 chrY 17971810 17972322 -33541262 + L1MB1 LINE L1 5586 6106 -83 2301 103 3 51 chrY 17972326 17972676 -33540908 + L1PB1 LINE L1 5801 6133 -18 375 145 43 0 chrY 17972716 17972785 -33540799 + L1MB1 LINE L1 6092 6163 -5 234 0 0 0 chrY 17973613 17973639 -33539945 + (A)n Simple_repeat Simple_repeat 1 26 0 204 201 29 43 chrY 17973841 17973989 -33539595 + CT-rich Low_complexity Low_complexity 1 145 0 2611 186 23 29 chrY 17973994 17974500 -33539084 - LTR12 LTR ERV1 -98 2340 1 4921 141 28 59 chrY 17974504 17975404 -33538180 - HERV9 LTR ERV1 -4 8395 7524 * 12220 138 9 4 chrY 17975401 17975424 -33538160 - HERV9 LTR ERV1 -1012 7387 7366 261 0 0 0 chrY 17975424 17975453 -33538131 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 12220 138 9 4 chrY 17975453 17978504 -33535080 - HERV9 LTR ERV1 -1033 7366 4238 * 20564 149 7 30 chrY 17978501 17982005 -33531579 - HERV9 LTR ERV1 -4452 3947 523 234 0 0 0 chrY 17982013 17982039 -33531545 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 3066 67 3 18 chrY 17982046 17982435 -33531149 - L1PA5 LINE L1 -2 6152 5770 207 0 0 0 chrY 17982580 17982603 -33530981 + (TTTAA)n Simple_repeat Simple_repeat 4 26 0 41931 67 2 2 chrY 17982603 17988734 -33524850 - L1PA3 LINE L1 -10 6145 12 22108 89 3 1 chrY 17988736 17992207 -33521377 - L1PA5 LINE L1 -371 5783 2304 12731 137 6 0 chrY 17992205 17994105 -33519479 - L1PA5 LINE L1 -4221 1925 15 * 2902 182 2 0 chrY 17994109 17994581 -33519003 - HERV9 LTR ERV1 -7873 526 54 574 218 2 45 chrY 17994597 17994715 -33518869 - LTR12 LTR ERV1 -130 584 382 2023 125 7 14 chrY 17994715 17995002 -33518582 + AluY SINE Alu 5 289 -22 574 218 2 45 chrY 17995002 17995035 -33518549 - LTR12 LTR ERV1 -332 382 349 232 296 0 0 chrY 17995035 17995106 -33518478 - LTR30 LTR ERV1 -108 614 544 1041 168 172 8 chrY 17995106 17995344 -33518240 - LTR12 LTR ERV1 -437 277 1 405 236 4 17 chrY 17995371 17995609 -33517975 + CT-rich Low_complexity Low_complexity 1 235 0 390 220 29 40 chrY 17995812 17995875 -33517709 + L1MB7 LINE L1 5598 5663 -512 720 200 0 30 chrY 17995875 17996010 -33517574 + FLAM_C SINE Alu 2 132 -1 390 220 29 40 chrY 17996010 17996061 -33517523 + L1MB7 LINE L1 5663 5713 -462 363 203 0 0 chrY 17996073 17996137 -33517447 + AluJ/FLAM SINE Alu 12 75 -227 837 251 18 0 chrY 17996148 17996319 -33517265 + AluSg/x SINE Alu 121 294 -18 886 280 35 55 chrY 17996331 17996689 -33516895 + L1MB7 LINE L1 5700 6051 -127 1595 204 0 10 chrY 17996689 17996997 -33516587 + AluSx SINE Alu 3 307 -5 886 280 35 55 chrY 17996997 17997038 -33516546 + L1MB7 LINE L1 6051 6091 -87 27 0 0 0 chrY 17997096 17997123 -33516461 + AT_rich Low_complexity Low_complexity 1 27 0 3113 123 0 2 chrY 17997123 17997561 -33516023 - L1PA7 LINE L1 -8 6146 5710 332 169 15 0 chrY 17997563 17997628 -33515956 + L1MB3 LINE L1 6115 6180 -3 3319 206 11 42 chrY 17998121 17998716 -33514868 - MER50 LTR ERV1 -13 721 152 1742 168 21 0 chrY 17998716 17999002 -33514582 - AluSx SINE Alu -20 292 1 3319 206 11 42 chrY 17999002 17999150 -33514434 - MER50 LTR ERV1 -582 152 1 496 281 0 0 chrY 18000427 18000555 -33513029 + L1MB3 LINE L1 5804 5931 -252 623 188 7 56 chrY 18000557 18000701 -33512883 - LTR23 LTR ERV1 -2 435 299 1385 238 50 32 chrY 18000712 18001150 -33512434 + LTR10B LTR ERV1 16 547 0 1935 255 87 34 chrY 18001150 18002212 -33511372 + LTR10B-int LTR ERV1 5 1132 -5970 2741 276 13 10 chrY 18002270 18002976 -33510608 + BaEV-int LTR ERV1 929 1636 -5013 * 5617 276 17 44 chrY 18002970 18005277 -33508307 + BaEV-int LTR ERV1 2284 3454 -3195 850 138 89 98 chrY 18005320 18005523 -33508061 + LTR12 LTR ERV1 55 255 -459 373 181 79 40 chrY 18005525 18005626 -33507958 + LTR30 LTR ERV1 553 624 -98 590 229 34 0 chrY 18005626 18005744 -33507840 + LTR12 LTR ERV1 359 480 -234 31725 140 26 11 chrY 18005769 18013973 -33499611 + HERV9 LTR ERV1 59 8399 0 1581 150 136 134 chrY 18014011 18014490 -33499094 + LTR12 LTR ERV1 1 480 -234 8175 255 22 28 chrY 18014587 18017022 -33496562 + LTR10B-int LTR ERV1 4230 6649 0 1462 209 63 23 chrY 18017022 18017463 -33496121 + LTR10B LTR ERV1 1 547 0 1079 194 0 10 chrY 18017474 18017670 -33495914 - AluJb SINE Alu -15 297 104 1257 183 17 28 chrY 18017674 18017964 -33495620 - LTR56 LTR ERV1 -147 298 12 1519 215 13 10 chrY 18018093 18018449 -33495135 + AluJb SINE Alu 1 357 0 1200 164 37 0 chrY 18018613 18018802 -33494782 + AluSx SINE Alu 11 206 -106 2098 196 8 3 chrY 18018865 18019227 -33494357 + THE1B LTR MaLR 1 364 0 1614 171 7 0 chrY 18019322 18019614 -33493970 + MER41B LTR ERV1 1 294 -341 2315 164 6 129 chrY 18019614 18020250 -33493334 - LTR6A LTR ERV1 0 564 1 1458 178 59 39 chrY 18020250 18020400 -33493184 + MER41B LTR ERV1 291 436 -199 1701 186 30 22 chrY 18020400 18020770 -33492814 - THE1C LTR MaLR -2 373 1 1458 178 59 39 chrY 18020770 18020957 -33492627 + MER41B LTR ERV1 436 635 0 995 199 41 4 chrY 18021386 18021632 -33491952 + LTR26 LTR ERV1 1 255 -348 443 285 54 42 chrY 18021708 18021968 -33491616 + L1MD2 LINE L1 6084 6346 -13 1895 222 48 71 chrY 18022237 18022898 -33490686 + MER82 DNA MER2_type 7 652 -1 24 0 0 0 chrY 18024704 18024728 -33488856 + AT_rich Low_complexity Low_complexity 1 24 0 1637 199 25 14 chrY 18024854 18025215 -33488369 - MLT1A1 LTR MaLR 0 365 1 278 143 0 0 chrY 18025443 18025485 -33488099 + Alu SINE Alu 1 42 -257 1441 271 88 44 chrY 18025625 18026073 -33487511 - MLT1E1 LTR MaLR 0 654 170 1820 172 7 7 chrY 18026073 18026376 -33487208 - AluSq SINE Alu -10 303 1 1441 271 88 44 chrY 18026376 18026537 -33487047 - MLT1E1 LTR MaLR -484 170 18 1693 104 62 35 chrY 18026586 18026926 -33486658 - MER11B LTR ERVK -5 1231 740 * 3420 100 42 0 chrY 18026909 18027437 -33486147 - MER11B LTR ERVK -686 550 1 1240 226 15 24 chrY 18027441 18027769 -33485815 - L1PA16 LINE L1 -72 6094 5770 1460 170 15 0 chrY 18027771 18028042 -33485542 + MER11B LTR ERVK 446 720 -516 1755 166 75 10 chrY 18028051 18028436 -33485148 - L1PA16 LINE L1 -402 5754 5345 1536 181 8 0 chrY 18028445 18028693 -33484891 - AluSg SINE Alu -25 285 36 363 217 61 10 chrY 18028726 18028829 -33484755 + AluJ/FRAM SINE Alu 216 282 -20 423 0 0 0 chrY 18028830 18028877 -33484707 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1006 145 54 114 chrY 18029096 18029541 -33484043 + LTR12 LTR ERV1 1 277 -437 355 222 0 0 chrY 18029541 18029622 -33483962 + LTR30 LTR ERV1 544 624 -98 636 236 24 0 chrY 18029622 18029745 -33483839 + LTR12 LTR ERV1 359 484 -230 1636 186 10 22 chrY 18029983 18030295 -33483289 + AluSg SINE Alu 1 308 -2 2394 175 83 16 chrY 18031142 18031696 -33481888 + L1PA16 LINE L1 5566 6156 -10 30415 130 18 9 chrY 18031729 18037831 -33475753 + L1PA6 LINE L1 9 6164 0 1678 181 3 0 chrY 18038241 18038529 -33475055 + AluSx SINE Alu 24 312 0 312 70 0 0 chrY 18039179 18039222 -33474362 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 654 248 0 0 chrY 18039228 18039361 -33474223 - AluSq/x SINE Alu -179 133 1 765 182 89 0 chrY 18039371 18039574 -33474010 - L1MA8 LINE L1 -5 6286 6066 1760 175 7 3 chrY 18039891 18040176 -33473408 + AluJb SINE Alu 3 288 -24 2409 91 0 25 chrY 18040303 18040622 -33472962 + AluY SINE Alu 1 311 0 1008 257 17 21 chrY 18040828 18040867 -33472717 + AluJo SINE Alu 6 44 -268 4326 92 3 3 chrY 18040867 18041454 -33472130 + LTR14C LTR ERVK 1 587 0 1008 257 17 21 chrY 18041454 18041702 -33471882 + AluJo SINE Alu 44 292 -20 500 182 0 10 chrY 18041877 18041976 -33471608 + MER4A LTR ERV1 1 98 -566 720 196 208 20 chrY 18042027 18042272 -33471312 + MER4A LTR ERV1 373 663 -1 598 275 48 0 chrY 18042678 18042885 -33470699 + L1MB5 LINE L1 5939 6155 -19 1107 153 5 0 chrY 18043178 18043374 -33470210 + MER41B LTR ERV1 2 198 -437 1028 256 19 8 chrY 18043462 18043728 -33469856 + LTR10B LTR ERV1 247 547 0 3804 289 49 52 chrY 18043728 18045674 -33467910 + LTR10B-int LTR ERV1 4 1943 -4706 1640 272 0 0 chrY 18045725 18046144 -33467440 + LTR10B-int LTR ERV1 2914 3332 -3317 35824 98 4 6 chrY 18046167 18052323 -33461261 + L1PA5 LINE L1 11 6150 -4 6379 297 55 46 chrY 18052346 18055809 -33457775 + LTR10B-int LTR ERV1 4276 7769 -16 851 226 89 9 chrY 18055911 18056170 -33457414 + LTR10B LTR ERV1 312 547 0 628 171 0 41 chrY 18056170 18056289 -33457295 + MER41A LTR ERV1 196 309 -245 1246 164 32 0 chrY 18056290 18056509 -33457075 - MER4B LTR ERV1 -4 606 381 239 163 82 0 chrY 18056599 18056648 -33456936 - MER4A LTR ERV1 -351 313 261 397 180 90 0 chrY 18056649 18056738 -33456846 - MER4A LTR ERV1 -567 97 1 1467 147 4 0 chrY 18056738 18056989 -33456595 + MER41A LTR ERV1 303 554 0 1229 241 17 34 chrY 18057157 18057564 -33456020 + L1MC2 LINE L1 5937 6336 -8 259 119 0 0 chrY 18057579 18057621 -33455963 + L1PB2 LINE L1 5831 5872 -279 362 205 0 36 chrY 18057804 18057887 -33455697 + LTR10B LTR ERV1 468 547 0 633 168 0 0 chrY 18057887 18057982 -33455602 - AluSg/x SINE Alu -31 281 187 1402 158 7 74 chrY 18057983 18058244 -33455340 + L1PB2 LINE L1 5860 6098 -53 2172 151 20 0 chrY 18058244 18058601 -33454983 + THE1B LTR MaLR 1 364 0 1402 158 7 74 chrY 18058601 18058649 -33454935 + L1PB2 LINE L1 6098 6148 -3 531 0 0 0 chrY 18058762 18058821 -33454763 + (TA)n Simple_repeat Simple_repeat 1 59 0 27823 83 10 5 chrY 18058821 18064927 -33448657 - L1PA5 LINE L1 -20 6134 2 186 158 0 0 chrY 18065028 18065047 -33448537 + (TAA)n Simple_repeat Simple_repeat 2 20 -19 1443 233 0 3 chrY 18065047 18065335 -33448249 + AluJb SINE Alu 1 287 -25 186 158 0 0 chrY 18065335 18065353 -33448231 + (TAA)n Simple_repeat Simple_repeat 19 39 0 1816 144 36 4 chrY 18065829 18066107 -33447477 - AluSx SINE Alu -21 291 5 714 181 8 8 chrY 18066137 18066264 -33447320 + FLAM_C SINE Alu 1 127 -16 208 68 23 45 chrY 18066264 18066308 -33447276 + (TAA)n Simple_repeat Simple_repeat 3 45 0 605 212 17 0 chrY 18066588 18066706 -33446878 - AluSp SINE Alu -133 180 61 578 230 26 47 chrY 18066878 18067062 -33446522 + L1MB3 LINE L1 5145 5319 -859 1705 196 3 10 chrY 18067062 18067368 -33446216 + AluSx SINE Alu 3 306 -6 578 230 26 47 chrY 18067368 18067486 -33446098 + L1MB3 LINE L1 5319 5438 -740 2921 205 15 2 chrY 18067488 18068103 -33445481 + L1PA16 LINE L1 5522 6144 -22 697 192 17 6 chrY 18068112 18068282 -33445302 + L1MB3 LINE L1 5428 5596 -572 332 175 16 0 chrY 18068282 18068345 -33445239 + Charlie1 DNA MER1_type 2697 2760 -1 645 238 6 0 chrY 18068736 18068896 -33444688 + MER58B DNA MER1_type 167 327 -14 1486 229 36 45 chrY 18069104 18069166 -33444418 + MER89 LTR ERV1 1 62 -497 2019 107 10 32 chrY 18069166 18069474 -33444110 + AluY SINE Alu 5 305 -6 1486 229 36 45 chrY 18069474 18069883 -33443701 + MER89 LTR ERV1 62 468 -91 299 238 20 14 chrY 18069888 18070035 -33443549 + (TGGA)n Simple_repeat Simple_repeat 4 151 0 477 245 21 20 chrY 18070061 18070402 -33443182 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 434 217 25 0 chrY 18070500 18070661 -33442923 + (TGGA)n Simple_repeat Simple_repeat 4 168 0 316 253 11 0 chrY 18070673 18070760 -33442824 + MER89 LTR ERV1 472 559 0 1612 204 3 13 chrY 18071872 18072176 -33441408 - AluJb SINE Alu -11 301 1 797 129 11 22 chrY 18073006 18073184 -33440400 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 274 204 29 35 chrY 18073227 18073399 -33440185 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 2096 212 23 4 chrY 18073597 18074082 -33439502 + L1MB3 LINE L1 5586 6079 -104 1258 160 13 35 chrY 18074117 18074348 -33439236 + AluJo SINE Alu 87 312 0 647 139 132 128 chrY 18074348 18074614 -33438970 + L1MA8 LINE L1 6021 6287 -4 40 59 0 0 chrY 18074699 18074767 -33438817 + AT_rich Low_complexity Low_complexity 1 68 0 564 202 0 0 chrY 18074798 18074907 -33438677 + AluSp/q SINE Alu 205 313 0 860 257 64 0 chrY 18074917 18075119 -33438465 - AluJo SINE Alu -97 215 1 276 260 175 32 chrY 18075661 18075815 -33437769 + MIR SINE MIR 45 220 -42 362 346 59 48 chrY 18075852 18076207 -33437377 - HAL1 LINE L1 -698 1809 1451 1922 153 44 0 chrY 18076208 18076550 -33437034 - AluSx SINE Alu 0 355 1 475 274 0 53 chrY 18076570 18076760 -33436824 + CT-rich Low_complexity Low_complexity 1 180 0 1603 194 13 10 chrY 18076927 18077226 -33436358 + AluJb SINE Alu 1 300 -12 1655 191 0 0 chrY 18077750 18078055 -33435529 + AluSx SINE Alu 5 309 0 1315 218 48 3 chrY 18078095 18078407 -33435177 + MLT1A1 LTR MaLR 1 326 -39 388 323 191 34 chrY 18078431 18078756 -33434828 + HAL1 LINE L1 179 554 -1953 1544 191 0 68 chrY 18078895 18079204 -33434380 - AluJb SINE Alu -24 288 1 1468 126 4 0 chrY 18079241 18079471 -33434113 - L1PA14 LINE L1 -3 6158 5928 206 81 27 0 chrY 18079518 18079555 -33434029 + (TA)n Simple_repeat Simple_repeat 1 38 0 231 253 11 21 chrY 18079573 18079668 -33433916 + (TA)n Simple_repeat Simple_repeat 2 95 0 206 157 0 20 chrY 18079926 18079977 -33433607 + CT-rich Low_complexity Low_complexity 3 52 0 567 29 0 0 chrY 18079979 18080048 -33433536 + (TTATG)n Simple_repeat Simple_repeat 2 70 0 1363 223 3 34 chrY 18080050 18080346 -33433238 - AluJb SINE Alu -25 287 1 1558 197 17 13 chrY 18080447 18080746 -33432838 + AluJo SINE Alu 1 300 -12 1056 200 135 20 chrY 18081021 18081266 -33432318 + AluSg SINE Alu 1 273 -37 282 73 0 0 chrY 18081272 18081313 -33432271 + (CA)n Simple_repeat Simple_repeat 2 42 0 389 207 180 0 chrY 18081781 18081892 -33431692 - FLAM_A SINE Alu -1 132 2 906 216 143 29 chrY 18082010 18082255 -33431329 - AluSg SINE Alu -37 273 1 1854 185 103 5 chrY 18082262 18082689 -33430895 - L1MC1 LINE L1 0 6333 5865 1421 248 3 0 chrY 18082705 18082995 -33430589 - AluJo SINE Alu -9 303 13 249 98 0 0 chrY 18083008 18083049 -33430535 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2032 126 0 64 chrY 18083054 18083234 -33430350 - AluSc SINE Alu -4 305 154 2050 142 3 7 chrY 18083234 18083543 -33430041 - AluY SINE Alu -3 308 1 2032 126 0 64 chrY 18083543 18083688 -33429896 - AluSc SINE Alu -155 154 1 1767 181 21 0 chrY 18083694 18084030 -33429554 - L1MC1 LINE L1 -530 5803 5461 1731 189 7 0 chrY 18084123 18084429 -33429155 - AluJo SINE Alu 0 312 5 380 266 87 6 chrY 18084431 18084604 -33428980 - L1M4 LINE L1 -2064 4082 3896 340 306 73 31 chrY 18084720 18085200 -33428384 - L1M4 LINE L1 -2433 3713 3214 239 222 19 37 chrY 18085227 18085335 -33428249 + (TTAAA)n Simple_repeat Simple_repeat 3 108 0 255 237 0 0 chrY 18085355 18085414 -33428170 + MER2 DNA MER2_type 31 89 -256 34 65 0 0 chrY 18085469 18085531 -33428053 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chrY 18085605 18085626 -33427958 + AT_rich Low_complexity Low_complexity 1 21 0 671 251 25 10 chrY 18086527 18086726 -33426858 + MER2 DNA MER2_type 9 210 -135 285 211 28 0 chrY 18086722 18086793 -33426791 - AluJ/FRAM SINE Alu 0 302 230 * 282 106 21 0 chrY 18086794 18086841 -33426743 + LTR12 LTR ERV1 2 49 -665 240 254 0 0 chrY 18086874 18086945 -33426639 + LTR30 LTR ERV1 544 614 -108 730 159 10 15 chrY 18086945 18087113 -33426471 + LTR12 LTR ERV1 301 584 -130 * 3153 152 4 0 chrY 18087101 18087622 -33425962 + HERV9 LTR ERV1 60 582 -7817 32851 59 3 1 chrY 18087633 18092890 -33420694 - L1PA3 LINE L1 -6 6149 881 1559 71 0 0 chrY 18092890 18093102 -33420482 - L1P LINE L1 -2538 3608 3397 277 159 0 0 chrY 18093102 18093146 -33420438 + HERV9 LTR ERV1 3793 3836 -4563 367 88 0 0 chrY 18093146 18093203 -33420381 + L1P LINE L1 5137 5193 -953 * 669 41 0 10 chrY 18093194 18093291 -33420293 + L1P LINE L1 3310 3405 -2741 348 98 0 0 chrY 18093291 18093342 -33420242 + L1P LINE L1 5182 5232 -914 7151 110 9 12 chrY 18093346 18094466 -33419118 + HERV9 LTR ERV1 3839 4955 -3444 1496 147 21 14 chrY 18094453 18094739 -33418845 + HERV17 LTR ERV1 760 1047 -7579 * 1459 138 4 25 chrY 18094728 18095156 -33418428 + HERV17 LTR ERV1 1275 1740 -5156 * 4624 139 15 11 chrY 18095140 18095923 -33417661 + HERV17 LTR ERV1 7613 8398 -1 1043 165 169 0 chrY 18095925 18096162 -33417422 + LTR12 LTR ERV1 1 277 -437 319 244 0 0 chrY 18096162 18096244 -33417340 + LTR30 LTR ERV1 544 625 -97 499 235 0 0 chrY 18096245 18096363 -33417221 + LTR12 LTR ERV1 361 581 -133 656 194 7 49 chrY 18096363 18096507 -33417077 - AluJo SINE Alu -79 233 96 34 0 0 0 chrY 18096550 18096584 -33417000 + AT_rich Low_complexity Low_complexity 1 34 0 883 91 0 0 chrY 18096584 18096705 -33416879 - L1PA5 LINE L1 -8 6146 6026 261 57 0 0 chrY 18096706 18096741 -33416843 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 618 230 16 0 chrY 18096744 18096870 -33416714 - AluSq/x SINE Alu -184 128 1 583 233 16 0 chrY 18097311 18097440 -33416144 - FLAM_A SINE Alu -2 131 1 980 210 9 58 chrY 18097505 18097729 -33415855 - AluJo SINE Alu -95 217 5 279 0 0 0 chrY 18097954 18097985 -33415599 + (TTA)n Simple_repeat Simple_repeat 3 33 0 207 43 85 21 chrY 18097987 18098034 -33415550 + (TA)n Simple_repeat Simple_repeat 1 50 0 6005 102 5 16 chrY 18098034 18099321 -33414263 - L1PA7 LINE L1 -8 6146 4857 558 259 82 20 chrY 18099653 18099800 -33413784 - FRAM SINE Alu -10 156 1 1027 229 0 9 chrY 18099806 18100024 -33413560 - AluJb SINE Alu -10 302 87 642 213 8 0 chrY 18100300 18100422 -33413162 - AluSq/x SINE Alu -181 131 9 207 0 0 0 chrY 18100432 18100455 -33413129 + (TC)n Simple_repeat Simple_repeat 2 24 0 2022 141 7 7 chrY 18100455 18100753 -33412831 - AluSq SINE Alu -14 299 2 1954 219 16 12 chrY 18100810 18101303 -33412281 + L1MB7 LINE L1 5654 6148 -36 2735 157 2 2 chrY 18101318 18101795 -33411789 - MER41B LTR ERV1 -14 621 145 439 297 10 0 chrY 18101948 18102049 -33411535 - MER5A DNA MER1_type -61 128 27 1157 223 29 84 chrY 18102338 18102648 -33410936 - AluJo SINE Alu -19 293 1 494 258 15 8 chrY 18102950 18103082 -33410502 + FRAM SINE Alu 22 154 -22 1892 165 3 10 chrY 18103092 18103389 -33410195 + AluSq SINE Alu 1 295 -18 1499 160 9 0 chrY 18103437 18103668 -33409916 - AluSg/x SINE Alu -12 300 68 357 268 0 47 chrY 18103878 18104005 -33409579 - MLT1C LTR MaLR -8 459 339 616 63 0 0 chrY 18104005 18104084 -33409500 - L1P1 LINE L1 -504 5651 5573 * 16411 115 5 1 chrY 18104082 18106625 -33406959 - L1P LINE L1 -3583 2563 11 1039 106 0 0 chrY 18106640 18106791 -33406793 - L1P2 LINE L1 -374 5780 5630 8065 173 44 3 chrY 18106792 18108271 -33405313 + HUERS-P2 LTR ERV1 1549 3088 0 2405 234 65 67 chrY 18108271 18109058 -33404526 + LTR1 LTR ERV1 1 785 0 675 205 0 0 chrY 18109058 18109180 -33404404 + AluSg/x SINE Alu 171 292 -18 21 71 0 0 chrY 18109299 18109341 -33404243 + AT_rich Low_complexity Low_complexity 1 42 0 954 289 66 7 chrY 18109345 18109618 -33403966 + AluJo SINE Alu 3 291 -11 31 0 0 0 chrY 18109709 18109740 -33403844 + AT_rich Low_complexity Low_complexity 1 31 0 1129 83 13 0 chrY 18110370 18110526 -33403058 - L1PA7 LINE L1 -1 6153 5996 346 324 169 7 chrY 18111434 18111582 -33402002 - MER5A DNA MER1_type -7 182 11 21 36 0 0 chrY 18111760 18111788 -33401796 + AT_rich Low_complexity Low_complexity 1 28 0 782 276 52 45 chrY 18112296 18112582 -33401002 - AluJo SINE Alu -14 288 1 4333 204 27 58 chrY 18113177 18114173 -33399411 + MSTA-int LTR MaLR 616 1580 0 474 212 206 7 chrY 18114173 18114319 -33399265 + MSTA LTR MaLR 1 175 -253 802 208 154 110 chrY 18114320 18114657 -33398927 + MSTA LTR MaLR 77 428 0 1396 224 60 21 chrY 18114789 18115120 -33398464 + THE1C LTR MaLR 32 375 0 1630 195 3 3 chrY 18115155 18115442 -33398142 + AluSx SINE Alu 1 287 -25 192 253 80 27 chrY 18115966 18116041 -33397543 - MIR SINE MIR -30 232 154 594 220 0 1 chrY 18116589 18116708 -33396876 - THE1C LTR MaLR -210 165 39 1490 177 17 58 chrY 18117493 18117787 -33395797 + AluSq SINE Alu 1 282 -31 668 63 0 11 chrY 18117789 18117884 -33395700 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1271 244 46 3 chrY 18118388 18118737 -33394847 - LTR56 LTR ERV1 0 445 82 10751 185 18 94 chrY 18118748 18121740 -33391844 + L1P LINE L1 12 2777 -3369 2807 103 82 0 chrY 18121768 18122195 -33391389 + L1PA7 LINE L1 5690 6151 -3 331 228 33 22 chrY 18122195 18122287 -33391297 - LTR56 LTR ERV1 -352 93 1 1191 239 37 18 chrY 18122751 18123300 -33390284 - MER67C LTR ERV1 -11 699 80 279 0 0 0 chrY 18123505 18123536 -33390048 + (A)n Simple_repeat Simple_repeat 1 31 0 411 207 19 19 chrY 18124067 18124229 -33389355 + LTR56 LTR ERV1 276 437 0 24 85 0 0 chrY 18124763 18124822 -33388762 + AT_rich Low_complexity Low_complexity 1 59 0 1556 213 26 0 chrY 18124865 18125175 -33388409 - MER83C LTR ERV1 -39 334 17 2735 235 57 10 chrY 18125180 18126297 -33387287 - MER83C-int LTR ERV1 -4 4876 3638 1703 189 0 0 chrY 18126297 18126578 -33387006 - AluSq SINE Alu -19 294 14 1084 293 111 46 chrY 18126596 18127273 -33386311 - MER50 LTR ERV1 0 734 14 1868 189 26 10 chrY 18127273 18127788 -33385796 - MER50-int LTR ERV1 -2 7203 3889 39653 73 13 1 chrY 18128125 18134207 -33379377 + L1PA4 LINE L1 2 6153 -2 459 304 49 41 chrY 18135308 18135746 -33377838 - MER50-int LTR ERV1 -2016 5740 4807 460 288 73 42 chrY 18136099 18136524 -33377060 - MER50-int LTR ERV1 -1808 5283 4547 438 328 0 8 chrY 18136583 18136708 -33376876 - MER50-int LTR ERV1 -4296 2909 2786 * 1254 195 21 47 chrY 18136692 18137031 -33376553 - MER50-int LTR ERV1 -1129 6076 5747 2502 151 44 46 chrY 18137038 18137534 -33376050 - MER50-int LTR ERV1 -840 5106 4612 272 87 65 0 chrY 18137529 18137575 -33376009 - MER50-int LTR ERV1 -2334 2883 2835 * 1181 204 104 13 chrY 18137575 18137972 -33375612 - MER50-int LTR ERV1 -3921 2025 1628 2037 194 15 10 chrY 18137986 18138393 -33375191 - MER50-int LTR ERV1 -886 3994 3586 517 268 9 0 chrY 18138390 18138502 -33375082 - MER50-int LTR ERV1 -4305 2900 2788 * 331 309 0 44 chrY 18138538 18138674 -33374910 - MER50-int LTR ERV1 -460 4757 4628 1567 189 45 49 chrY 18138689 18139088 -33374496 - THE1B LTR MaLR -10 418 3 9587 164 5 7 chrY 18139090 18140629 -33372955 - THE1B-int LTR MaLR 0 1580 45 1291 201 51 37 chrY 18140629 18140923 -33372661 - THE1B LTR MaLR -66 298 1 270 209 110 11 chrY 18140923 18141014 -33372570 - MER50-int LTR ERV1 -5535 1670 1571 2657 225 149 90 chrY 18141047 18142205 -33371379 - MER50-int LTR ERV1 -5586 1619 393 372 264 28 19 chrY 18142207 18142313 -33371271 - MER50-int LTR ERV1 -7098 107 1 1078 262 140 52 chrY 18142334 18142983 -33370601 - MER50 LTR ERV1 -12 722 17 2673 249 32 27 chrY 18142996 18143017 -33370567 - MER83B-int LTR ERV1 -1244 3636 3617 1792 182 36 22 chrY 18143017 18143374 -33370210 + THE1B LTR MaLR 3 364 0 2673 249 32 27 chrY 18143374 18144211 -33369373 - MER83B-int LTR ERV1 -1263 3617 683 2982 243 30 7 chrY 18144300 18144995 -33368589 + MER50 LTR ERV1 1 711 -23 4851 201 44 7 chrY 18144996 18146208 -33367376 + MER50-int LTR ERV1 1 1347 -5858 1622 169 126 6 chrY 18146337 18146662 -33366922 - THE1B LTR MaLR 0 364 1 7394 183 59 30 chrY 18146662 18146977 -33366607 - THE1B-int LTR MaLR 0 1580 1276 2274 84 3 3 chrY 18146977 18147273 -33366311 - AluY SINE Alu -15 296 1 7394 183 59 30 chrY 18147273 18148492 -33365092 - THE1B-int LTR MaLR -304 1276 1 1728 191 42 33 chrY 18148492 18148853 -33364731 - THE1B LTR MaLR 0 364 1 24 0 0 0 chrY 18148883 18148907 -33364677 + AT_rich Low_complexity Low_complexity 1 24 0 317 217 27 81 chrY 18149120 18149341 -33364243 + LTR56-int LTR ERV1 3467 3675 -2656 1010 261 14 14 chrY 18149447 18149730 -33363854 + AluJb SINE Alu 11 293 -19 265 234 164 0 chrY 18149741 18149869 -33363715 + LTR56-int LTR ERV1 3184 3332 -1548 1868 160 0 0 chrY 18149869 18150144 -33363440 + AluSg SINE Alu 1 275 -35 233 29 29 0 chrY 18150148 18150182 -33363402 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 940 189 19 0 chrY 18150182 18150341 -33363243 + AluSg/x SINE Alu 131 292 -18 279 0 0 0 chrY 18150572 18150603 -33362981 + (A)n Simple_repeat Simple_repeat 1 31 0 715 268 13 21 chrY 18151702 18151937 -33361647 + LTR56-int LTR ERV1 4790 5022 -101 642 264 31 73 chrY 18152037 18152482 -33361102 + LTR56 LTR ERV1 22 426 -11 201 288 0 0 chrY 18152498 18152571 -33361013 + A-rich Low_complexity Low_complexity 3 75 0 528 301 110 10 chrY 18153431 18153740 -33359844 - MER21B LTR ERV1 -107 756 417 641 276 121 26 chrY 18153802 18154142 -33359442 + MER92B LTR ERV1 57 428 -208 3271 180 67 12 chrY 18154155 18154904 -33358680 - L1MA1 LINE L1 -297 6005 5221 3799 259 22 9 chrY 18154974 18156188 -33357396 - L1MA1 LINE L1 -944 5202 3973 3376 99 14 10 chrY 18156195 18156679 -33356905 - LTR15 LTR ERV1 -7 486 1 288 280 0 9 chrY 18156687 18156794 -33356790 - L1M4 LINE L1 -2178 3968 3863 203 0 37 0 chrY 18157058 18157085 -33356499 + (CAA)n Simple_repeat Simple_repeat 2 29 0 671 178 15 37 chrY 18157085 18157220 -33356364 + LTR9 LTR ERV1 49 180 -432 1313 260 18 67 chrY 18157246 18157680 -33355904 + LTR9 LTR ERV1 187 599 -13 2437 231 62 57 chrY 18157696 18158004 -33355580 + MER57-int LTR ERV1 6074 6379 -1158 2158 129 3 0 chrY 18158004 18158307 -33355277 - AluY SINE Alu -7 304 1 2437 231 62 57 chrY 18158307 18158718 -33354866 + MER57-int LTR ERV1 6379 6797 -740 276 239 28 0 chrY 18158720 18158791 -33354793 + LTR54B LTR ERV1 49 121 -377 185 250 16 97 chrY 18158796 18158920 -33354664 - MER5C DNA MER1_type -129 195 82 485 217 54 16 chrY 18158921 18159050 -33354534 + MER57-int LTR ERV1 7404 7537 0 404 185 225 69 chrY 18159339 18159512 -33354072 - MER4A LTR ERV1 -322 342 143 9364 57 3 1 chrY 18159512 18160738 -33352846 - L1P LINE L1 -1929 4217 2989 8588 63 5 0 chrY 18160738 18162626 -33350958 + L1PA4 LINE L1 4260 6152 -3 27 0 0 0 chrY 18162633 18162660 -33350924 + AT_rich Low_complexity Low_complexity 1 27 0 636 219 7 20 chrY 18162669 18162820 -33350764 - MER4A LTR ERV1 -514 150 2 261 169 0 46 chrY 18162832 18162897 -33350687 - MER4A-int LTR ERV1 -5 6593 6532 272 256 0 0 chrY 18163148 18163238 -33350346 + L1MC4 LINE L1 6614 6703 -1339 446 370 26 21 chrY 18163711 18164098 -33349486 - MER4C-int LTR ERV1 -2117 2530 2142 310 243 73 87 chrY 18164744 18164969 -33348615 - MER4C-int LTR ERV1 -2983 4773 4101 279 304 35 26 chrY 18165040 18165155 -33348429 - MER4C-int LTR ERV1 -3309 3492 3377 185 372 11 21 chrY 18165802 18165896 -33347688 - L2 LINE L2 -1134 2180 2088 253 331 35 35 chrY 18166064 18166233 -33347351 - MER4C-int LTR ERV1 -5193 3726 3558 1387 132 5 0 chrY 18166923 18167128 -33346456 + MER9 LTR ERVK 1 206 -305 569 191 0 9 chrY 18167126 18167236 -33346348 + MER9 LTR ERVK 403 511 0 * 16612 110 20 8 chrY 18167236 18169676 -33343908 + HERVK9 LTR ERVK 1 2469 -3447 994 76 0 0 chrY 18169675 18169807 -33343777 + HERVK9 LTR ERVK 2654 2785 -3131 * 1833 56 4 0 chrY 18169808 18170039 -33343545 + HERVK9 LTR ERVK 3710 3941 -1975 * 6676 128 27 3 chrY 18170038 18171066 -33342518 + HERVK9 LTR ERVK 4582 5634 -282 2193 130 10 3 chrY 18171091 18171443 -33342141 + HERVK9 LTR ERVK 5635 5916 0 2840 132 37 33 chrY 18171443 18171952 -33341632 + MER9 LTR ERVK 1 511 0 201 74 0 0 chrY 18173152 18173179 -33340405 + (CA)n Simple_repeat Simple_repeat 2 28 0 459 224 40 44 chrY 18173187 18173559 -33340025 - MER4C-int LTR ERV1 -5995 603 111 312 218 264 9 chrY 18173690 18173800 -33339784 - MER4C LTR ERV1 -27 438 301 858 191 199 15 chrY 18173879 18174141 -33339443 - MER4A LTR ERV1 -336 328 19 270 0 0 0 chrY 18174141 18174171 -33339413 + (TG)n Simple_repeat Simple_repeat 1 30 0 476 231 0 7 chrY 18174171 18174318 -33339266 + (TA)n Simple_repeat Simple_repeat 1 146 0 1863 169 24 0 chrY 18174319 18174615 -33338969 - AluSx SINE Alu -9 303 1 690 259 0 11 chrY 18174641 18174815 -33338769 + MER57A LTR ERV1 96 267 -136 272 333 0 12 chrY 18175171 18175252 -33338332 + MIR SINE MIR 31 110 -152 329 58 19 0 chrY 18175284 18175336 -33338248 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 906 294 13 36 chrY 18175513 18175822 -33337762 + AluJb SINE Alu 11 312 0 843 70 11 59 chrY 18175835 18176022 -33337562 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1683 176 33 7 chrY 18176051 18176353 -33337231 + AluSg SINE Alu 1 310 0 195 64 43 43 chrY 18176358 18176405 -33337179 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1104 106 6 6 chrY 18176489 18176840 -33336744 + (TTC)n Simple_repeat Simple_repeat 1 351 0 491 314 88 35 chrY 18176842 18177103 -33336481 + MLT1H LTR MaLR 223 497 -52 487 269 106 35 chrY 18177720 18178002 -33335582 + MER33 DNA MER1_type 1 302 -22 3060 58 15 0 chrY 18179518 18179966 -33333618 + L1P2 LINE L1 4980 5431 -723 1975 180 27 10 chrY 18179978 18180389 -33333195 - L1M1 LINE L1 -4437 3128 2711 6683 261 46 9 chrY 18180396 18182270 -33331314 - L1M1 LINE L1 -4705 2860 918 523 238 82 29 chrY 18182291 18182497 -33331087 - L1M1 LINE L1 -7340 225 9 * 677 259 36 20 chrY 18182490 18182737 -33330847 - L1P4 LINE L1 -501 5665 5415 508 320 56 35 chrY 18182743 18183205 -33330379 + L1PA13 LINE L1 1679 2150 -4637 397 328 83 9 chrY 18183444 18183673 -33329911 + MER67C LTR ERV1 263 508 -202 1716 189 39 33 chrY 18183906 18184265 -33329319 - THE1B LTR MaLR -1 363 3 5228 213 42 12 chrY 18184268 18185334 -33328250 - THE1B-int LTR MaLR 0 1580 483 8307 55 3 2 chrY 18185402 18187258 -33326326 - L1PA4 LINE L1 -1 6154 4301 7743 109 11 0 chrY 18187258 18188341 -33325243 + L1P LINE L1 64 1158 -4988 2022 174 74 4 chrY 18188339 18188779 -33324805 - THE1B-int LTR MaLR -1084 496 45 * 183 170 0 0 chrY 18188804 18188851 -33324733 + (CTG)n Simple_repeat Simple_repeat 2 48 0 * 788 185 0 6 chrY 18188840 18189018 -33324566 + CT-rich Low_complexity Low_complexity 2 178 0 180 143 0 0 chrY 18189019 18189061 -33324523 + (TTC)n Simple_repeat Simple_repeat 1 42 0 347 216 81 18 chrY 18189075 18189186 -33324398 - THE1B-int LTR MaLR -1462 118 1 1479 198 33 49 chrY 18189188 18189261 -33324323 - THE1B LTR MaLR -2 362 289 1956 125 11 0 chrY 18189261 18189662 -33323922 + AluY SINE Alu 1 404 0 1479 198 33 49 chrY 18189662 18189955 -33323629 - THE1B LTR MaLR -75 289 1 1643 305 86 21 chrY 18190232 18190970 -33322614 + L1P3 LINE L1 4 708 -5167 2231 209 30 14 chrY 18190977 18191687 -33321897 + LTR25 LTR ERV1 8 794 0 6255 249 40 19 chrY 18191805 18193544 -33320040 + LTR25-int LTR ERV1 259 2033 -4963 3954 285 19 5 chrY 18193547 18194508 -33319076 + LTR25-int LTR ERV1 2724 3697 -5222 1852 167 7 3 chrY 18194539 18194838 -33318746 - AluSc SINE Alu -1 308 9 497 226 0 0 chrY 18194864 18194966 -33318618 - LTR12 LTR ERV1 -132 582 481 299 270 11 0 chrY 18194968 18195057 -33318527 - LTR30 LTR ERV1 -80 642 553 1514 122 3 137 chrY 18195058 18195387 -33318197 - LTR12 LTR ERV1 -429 285 1 3277 283 14 6 chrY 18195390 18196257 -33317327 + LTR25-int LTR ERV1 3717 4590 -4329 3119 225 37 32 chrY 18196292 18197089 -33316495 + LTR25 LTR ERV1 8 566 -3 822 308 27 64 chrY 18197095 18197469 -33316115 + L1P3 LINE L1 760 1119 -5342 * 1072 225 165 0 chrY 18197460 18197775 -33315809 + L1P LINE L1 4273 4639 -1507 7272 232 77 27 chrY 18197779 18199914 -33313670 - L1P LINE L1 -1878 4268 2028 5503 173 60 9 chrY 18199913 18201170 -33312414 + L1PA10 LINE L1 4170 5495 -673 * 3519 162 35 8 chrY 18202453 18203113 -33310471 + L1PA10 LINE L1 5491 6168 0 878 221 18 31 chrY 18203969 18204195 -33309389 - THE1-int LTR MaLR -1355 225 3 465 284 19 13 chrY 18204275 18204430 -33309154 + MLT1D LTR MaLR 13 168 -337 2886 187 39 0 chrY 18204536 18205071 -33308513 - L1PA10 LINE L1 -141 5990 5435 1082 139 6 0 chrY 18205071 18205236 -33308348 + L1PA10 LINE L1 6001 6167 -1 21 0 0 0 chrY 18205236 18205257 -33308327 + AT_rich Low_complexity Low_complexity 1 21 0 480 198 21 0 chrY 18205789 18205885 -33307699 + MLT1D LTR MaLR 394 491 -14 1306 238 162 11 chrY 18206286 18206656 -33306928 + MSTA LTR MaLR 1 426 -2 1514 276 40 30 chrY 18206725 18207683 -33305901 + L1MA7 LINE L1 4955 5919 -372 6380 89 9 60 chrY 18207683 18209582 -33304002 - L1PA7 LINE L1 -3 6151 4316 5502 67 7 7 chrY 18209582 18210330 -33303254 - L1P LINE L1 -2182 3964 3217 4868 39 2 0 chrY 18210325 18210922 -33302662 + L1P LINE L1 3974 4571 -1575 * 254 324 29 0 chrY 18210921 18211057 -33302527 - L1 LINE L1 -816 5330 5191 * 298 295 0 0 chrY 18211068 18211173 -33302411 - L1P LINE L1 -999 5147 5043 2073 161 29 12 chrY 18211214 18211625 -33301959 - L1PB1 LINE L1 0 6151 5734 885 220 40 51 chrY 18211633 18211907 -33301677 - L1PB2 LINE L1 -3 6864 6594 9632 62 6 14 chrY 18211910 18213959 -33299625 - L1PA4 LINE L1 0 6155 4123 9293 273 22 25 chrY 18213963 18214572 -33299012 - L1PB2 LINE L1 -267 6600 5991 1901 142 0 16 chrY 18214572 18214888 -33298696 - AluY SINE Alu 0 311 1 9293 273 22 25 chrY 18214888 18217365 -33296219 - L1PB2 LINE L1 -876 5991 3535 1530 208 10 3 chrY 18217365 18217658 -33295926 - AluSx SINE Alu -17 295 1 9293 273 22 25 chrY 18217658 18218780 -33294804 - L1PB2 LINE L1 -3332 3535 2412 5403 218 66 22 chrY 18218775 18220107 -33293477 - L1PB2 LINE L1 -5470 1393 3 * 3939 295 55 26 chrY 18220116 18222209 -33291375 - L1 LINE L1 -1134 5012 2860 477 272 30 107 chrY 18222300 18222537 -33291047 + L1MA8 LINE L1 5847 6052 -239 186 43 0 0 chrY 18222537 18222560 -33291024 + (TTA)n Simple_repeat Simple_repeat 2 24 0 477 272 30 107 chrY 18222560 18222660 -33290924 + L1MA8 LINE L1 6052 6158 -133 569 282 21 12 chrY 18222667 18222908 -33290676 + L1MA3 LINE L1 5078 5320 -826 5965 106 14 1 chrY 18222911 18224244 -33289340 + L1PA7 LINE L1 4782 6136 -18 34 42 0 0 chrY 18224272 18224320 -33289264 + AT_rich Low_complexity Low_complexity 1 48 0 382 242 199 8 chrY 18224320 18224441 -33289143 + MLT2C2 LTR ERVL 190 334 -63 1675 232 64 26 chrY 18224616 18225151 -33288433 + L1MA3 LINE L1 5314 5868 -437 23 33 0 0 chrY 18225180 18225210 -33288374 + AT_rich Low_complexity Low_complexity 1 30 0 2808 229 49 69 chrY 18225217 18225333 -33288251 - L1PA15 LINE L1 -7 6158 6041 5000 115 71 6 chrY 18225333 18226109 -33287475 + LTR12 LTR ERV1 1 826 0 2808 229 49 69 chrY 18226109 18227262 -33286322 - L1PA15 LINE L1 -124 6041 4917 1492 218 43 40 chrY 18227279 18227367 -33286217 - LTR25 LTR ERV1 0 794 708 2777 7 0 3 chrY 18227367 18227677 -33285907 + AluYa5 SINE Alu 1 309 -2 1492 218 43 40 chrY 18227677 18227960 -33285624 - LTR25 LTR ERV1 -86 708 422 5084 276 20 10 chrY 18228082 18229431 -33284153 - MSTA-int LTR MaLR -287 1364 2 1455 246 74 20 chrY 18229432 18229838 -33283746 - MSTA LTR MaLR 0 428 1 2004 268 87 19 chrY 18229853 18230923 -33282661 + L1M1 LINE L1 4356 5484 -744 757 381 32 12 chrY 18231062 18231469 -33282115 + L1PA15 LINE L1 95 509 -6278 241 396 20 13 chrY 18231496 18231645 -33281939 + L1PA15 LINE L1 572 721 -6066 2245 285 54 7 chrY 18231782 18231991 -33281593 + L1PA15 LINE L1 3698 3896 -2901 509 55 14 0 chrY 18231991 18232064 -33281520 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 2245 285 54 7 chrY 18232064 18232795 -33280789 + L1PA15 LINE L1 3896 4682 -2115 795 283 17 0 chrY 18232796 18233026 -33280558 + AluJb SINE Alu 71 304 -8 2274 263 37 9 chrY 18233034 18233703 -33279881 + L1PA15 LINE L1 6001 6688 -128 4826 192 35 22 chrY 18233705 18234658 -33278926 + L1PA8 LINE L1 10 974 -5487 8858 157 19 8 chrY 18234671 18236259 -33277325 + L1PA8 LINE L1 1747 3353 -3108 12218 141 19 1 chrY 18236259 18239138 -33274446 + L1PA8 LINE L1 3564 6487 0 518 219 15 7 chrY 18239138 18239268 -33274316 + L1PA15 LINE L1 6671 6808 -8 1253 269 43 48 chrY 18239270 18239948 -33273636 + L1PB4 LINE L1 5479 6153 -3 764 234 117 0 chrY 18239970 18240056 -33273528 + L1M3 LINE L1 5328 5403 -780 1555 84 0 0 chrY 18240056 18240271 -33273313 + L1PA4 LINE L1 5940 6154 -1 764 234 117 0 chrY 18240271 18240432 -33273152 + L1M3 LINE L1 5403 5604 -579 261 264 0 0 chrY 18240457 18240510 -33273074 + AluSp/q SINE Alu 154 206 -97 1021 141 30 10 chrY 18240510 18240708 -33272876 + L1PA8A LINE L1 5277 5478 -653 3483 228 22 6 chrY 18240708 18241507 -33272077 - L1PB3 LINE L1 -58 6812 6001 4635 248 60 60 chrY 18241748 18242522 -33271062 - L1PB3 LINE L1 -948 5914 5142 1792 162 3 0 chrY 18242522 18242818 -33270766 - AluSp SINE Alu -15 298 2 4635 248 60 60 chrY 18242818 18244288 -33269296 - L1PB3 LINE L1 -1720 5142 3669 1278 196 53 7 chrY 18244347 18244680 -33268904 - L1PA13 LINE L1 -13 6118 5753 484 181 0 11 chrY 18244746 18244840 -33268744 - L1PA5 LINE L1 -1 6153 6061 1513 270 58 37 chrY 18244840 18245330 -33268254 - L1PB3 LINE L1 -3348 3514 3005 1503 170 19 70 chrY 18245330 18245642 -33267942 + AluSc SINE Alu 1 296 -13 1513 270 58 37 chrY 18245642 18245826 -33267758 - L1PB3 LINE L1 -3857 3005 2826 328 323 109 18 chrY 18245848 18246037 -33267547 - L1PB3 LINE L1 -4130 2733 2518 180 0 0 0 chrY 18246037 18246057 -33267527 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 328 323 109 18 chrY 18246057 18246096 -33267488 - L1PB3 LINE L1 -4345 2518 2484 1774 310 34 29 chrY 18246199 18246957 -33266627 - L1PA16 LINE L1 -2 6164 5403 * 41737 44 21 2 chrY 18246956 18252985 -33260599 - L1PA2 LINE L1 -3 6152 3 2011 263 43 25 chrY 18252998 18253813 -33259771 - L1 LINE L1 -745 5401 4572 414 146 24 24 chrY 18253813 18253895 -33259689 + MER4A LTR ERV1 17 98 -566 1277 180 19 25 chrY 18253895 18254217 -33259367 + MER4A LTR ERV1 261 650 -14 616 208 114 16 chrY 18254223 18254478 -33259106 - L1 LINE L1 -1563 4583 4304 20708 204 23 21 chrY 18254494 18259646 -33253938 - L1PA10 LINE L1 -9 6474 971 315 0 0 0 chrY 18259646 18259681 -33253903 + (TG)n Simple_repeat Simple_repeat 2 36 0 20708 204 23 21 chrY 18259681 18260651 -33252933 - L1PA10 LINE L1 -5512 971 4 3074 226 54 50 chrY 18260647 18260970 -33252614 - L1 LINE L1 -1826 4320 4000 * 2014 145 10 0 chrY 18260970 18261273 -33252311 - AluSp SINE Alu -7 306 1 3074 226 54 50 chrY 18261273 18261761 -33251823 - L1 LINE L1 -2146 4000 3515 1823 155 7 0 chrY 18261761 18262057 -33251527 + AluSp SINE Alu 1 298 -15 3074 226 54 50 chrY 18262057 18262267 -33251317 - L1 LINE L1 -2631 3515 3291 1589 186 116 13 chrY 18262267 18262655 -33250929 + MSTA LTR MaLR 1 428 0 3074 226 54 50 chrY 18262655 18262744 -33250840 - L1 LINE L1 -2855 3291 3204 1603 184 21 32 chrY 18262755 18263129 -33250455 - L1PB1 LINE L1 0 6151 5782 278 151 0 99 chrY 18263134 18263326 -33250258 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 258 315 0 0 chrY 18263342 18263431 -33250153 - L1MC4 LINE L1 -1340 6702 6614 * 271 300 0 0 chrY 18263357 18263447 -33250137 + L1MC4 LINE L1 6614 6703 -1339 948 172 0 0 chrY 18263464 18263713 -33249871 + (TATG)n Simple_repeat Simple_repeat 1 249 0 499 240 22 28 chrY 18263714 18263917 -33249667 + (CATA)n Simple_repeat Simple_repeat 1 201 0 267 178 20 46 chrY 18263925 18264077 -33249507 + (CATATA)n Simple_repeat Simple_repeat 5 152 0 9789 236 61 24 chrY 18264083 18267014 -33246570 - L1P5 LINE L1 -360 6507 3687 2059 154 7 0 chrY 18267014 18267320 -33246264 - AluSp SINE Alu -5 308 1 9789 236 61 24 chrY 18267320 18270491 -33243093 - L1P5 LINE L1 -3180 3687 3 2411 261 51 32 chrY 18270516 18272245 -33241339 - L1 LINE L1 -2936 4629 2871 1228 201 34 12 chrY 18272257 18272580 -33241004 + L1PA13 LINE L1 2258 2587 -3559 7744 242 35 41 chrY 18272585 18273809 -33239775 + L1PA13 LINE L1 2430 3660 -2503 372 111 0 0 chrY 18273809 18273872 -33239712 + (CA)n Simple_repeat Simple_repeat 2 64 0 7744 242 35 41 chrY 18273872 18274734 -33238850 + L1PA13 LINE L1 3660 4526 -1637 2087 128 0 3 chrY 18274734 18275030 -33238554 - AluSc SINE Alu -14 295 1 7744 242 35 41 chrY 18275030 18276385 -33237199 + L1PA13 LINE L1 4526 5849 -314 1958 237 94 25 chrY 18276472 18277504 -33236080 + L1PB1 LINE L1 3345 4305 -1846 1947 58 0 0 chrY 18277504 18277746 -33235838 + L1PA5 LINE L1 5910 6151 -3 1958 237 94 25 chrY 18277746 18278691 -33234893 + L1PB1 LINE L1 4305 5668 -483 1374 179 12 0 chrY 18278693 18278945 -33234639 + L1PB1 LINE L1 5877 6131 -20 578 278 123 25 chrY 18278969 18279253 -33234331 + L1M1 LINE L1 91 402 -7163 5161 254 54 43 chrY 18279258 18280855 -33232729 - MER52A LTR ERV1 0 1755 59 234 277 15 0 chrY 18281205 18281270 -33232314 - MER52A LTR ERV1 -1689 66 1 3078 287 71 49 chrY 18281271 18281533 -33232051 + L1M1 LINE L1 405 660 -6905 187 54 54 0 chrY 18281533 18281570 -33232014 + A-rich Low_complexity Low_complexity 2 40 0 3078 287 71 49 chrY 18281570 18282167 -33231417 + L1M1 LINE L1 660 1304 -6261 1057 132 33 47 chrY 18282167 18282380 -33231204 + L1PA13 LINE L1 5950 6159 -4 3078 287 71 49 chrY 18282380 18282823 -33230761 + L1M1 LINE L1 1304 1736 -5829 475 57 171 0 chrY 18282822 18282892 -33230692 + L1P5 LINE L1 5562 5643 -508 * 2769 247 55 38 chrY 18282896 18283820 -33229764 + MST-int LTR MaLR 115 1054 -597 813 230 63 10 chrY 18283865 18284350 -33229234 + L1P4 LINE L1 4977 5484 -681 4499 269 29 9 chrY 18284362 18285636 -33227948 + L1PA12 LINE L1 11 1309 -6272 3149 60 0 106 chrY 18285636 18286137 -33227447 + LTR7 LTR ERV1 1 448 -2 864 130 7 0 chrY 18286139 18286277 -33227307 + HERVH LTR ERV1 1 139 -7574 39132 52 22 5 chrY 18286306 18287009 -33226575 - L1PA3 LINE L1 0 6155 5466 2878 9 0 6 chrY 18287009 18287329 -33226255 - AluYb8 SINE Alu 0 318 1 39132 52 22 5 chrY 18287329 18292691 -33220893 - L1PA3 LINE L1 -689 5466 6 14377 173 19 45 chrY 18292697 18297058 -33216526 + HERVH LTR ERV1 124 3995 -3210 2376 107 1 4 chrY 18297086 18297444 -33216140 + HERVH LTR ERV1 3953 4316 -2749 * 24462 82 0 3 chrY 18297442 18300912 -33212672 + HERVH LTR ERV1 4252 7713 0 3220 54 2 104 chrY 18300912 18301411 -33212173 + LTR7 LTR ERV1 1 448 -2 885 223 21 60 chrY 18301449 18301732 -33211852 + L1PA12 LINE L1 2391 2662 -4912 894 256 65 91 chrY 18301735 18302389 -33211195 - LTR9B LTR ERV1 0 612 1 1104 230 15 15 chrY 18302389 18302650 -33210934 - HUERS-P3 LTR ERV1 0 8919 8659 640 184 11 50 chrY 18302973 18303152 -33210432 - LTR9B-int LTR ERV1 -3691 4125 3954 3166 214 38 56 chrY 18303177 18303993 -33209591 - LTR9B-int LTR ERV1 -1957 6962 6162 * 3386 176 40 12 chrY 18303978 18304637 -33208947 - LTR9B-int LTR ERV1 -3342 5577 4901 526 157 0 39 chrY 18304639 18304741 -33208843 - LTR9B-int LTR ERV1 -4238 4681 4584 6297 218 39 18 chrY 18304799 18306976 -33206608 - LTR9B-int LTR ERV1 -5349 2069 746 1057 251 22 11 chrY 18307019 18307294 -33206290 - LTR9B-int LTR ERV1 -8378 541 264 907 276 68 92 chrY 18307400 18307962 -33205622 - LTR9B LTR ERV1 0 612 65 1969 259 8 10 chrY 18307970 18308577 -33205007 + L1PA12 LINE L1 2960 3565 -4019 6491 113 22 40 chrY 18308586 18314747 -33198837 + L1PA6 LINE L1 11 6154 0 732 249 26 23 chrY 18314812 18315077 -33198507 + L1PBa LINE L1 1649 1914 -4949 926 258 41 38 chrY 18315086 18315820 -33197764 + L1PBa LINE L1 2210 3054 -3808 1414 199 0 4 chrY 18315821 18316082 -33197502 - AluSx SINE Alu -5 307 48 1059 241 15 9 chrY 18316082 18316422 -33197162 + L1 LINE L1 3046 3387 -3475 1363 248 44 24 chrY 18316424 18317013 -33196571 + L1 LINE L1 3473 4073 -2789 272 65 65 0 chrY 18317044 18317090 -33196494 + LTR8A LTR ERV1 2 50 -677 * 1080 217 16 24 chrY 18317088 18317337 -33196247 + LTR8 LTR ERV1 445 691 0 2076 171 6 15 chrY 18317337 18317804 -33195780 + HUERS-P1 LTR ERV1 1 393 -5870 4025 124 13 2 chrY 18317804 18318432 -33195152 + PABL_A LTR ERV1 26 660 0 652 228 0 0 chrY 18318496 18318623 -33194961 + PABL_A-int LTR ERV1 115 241 -4774 5273 118 49 5 chrY 18318627 18319665 -33193919 + PABL_A-int LTR ERV1 3803 4950 -65 3737 130 1 62 chrY 18319720 18320396 -33193188 + PABL_A LTR ERV1 26 660 0 1863 169 26 31 chrY 18320396 18320786 -33192798 + HUERS-P1 LTR ERV1 251 638 -5625 1447 251 57 26 chrY 18320786 18321276 -33192308 + LTR10B LTR ERV1 1 505 0 3363 252 85 43 chrY 18321300 18322703 -33190881 + HERVI LTR ERV1 26 1486 -6299 * 8981 263 39 19 chrY 18322699 18325668 -33187916 + HERVI LTR ERV1 4756 7784 -1 1224 198 150 86 chrY 18325671 18326185 -33187399 + LTR10B LTR ERV1 1 547 0 6483 122 20 28 chrY 18326185 18327280 -33186304 + HUERS-P1 LTR ERV1 635 1720 -4543 4496 191 35 15 chrY 18327303 18327522 -33186062 + L1PB3 LINE L1 4683 4896 -1258 2058 114 0 0 chrY 18327522 18327794 -33185790 + AluY SINE Alu 1 272 -39 4496 191 35 15 chrY 18327794 18329000 -33184584 + L1PB3 LINE L1 4896 6152 -2 1479 197 9 34 chrY 18329273 18329593 -33183991 + AluJb SINE Alu 1 312 0 217 245 0 19 chrY 18329593 18329636 -33183948 + GA-rich Low_complexity Low_complexity 11 54 0 2879 198 58 5 chrY 18331076 18331869 -33181715 + L1MA4 LINE L1 5424 6299 -1 1248 45 0 0 chrY 18332264 18332419 -33181165 + (CTATA)n Simple_repeat Simple_repeat 2 156 0 249 171 61 49 chrY 18333074 18333156 -33180428 + L1MA4A LINE L1 4256 4338 -1808 413 101 0 14 chrY 18335307 18335376 -33178208 + (CA)n Simple_repeat Simple_repeat 2 69 0 1520 181 6 62 chrY 18335422 18335743 -33177841 - AluJb SINE Alu -9 303 1 1497 169 59 19 chrY 18335897 18336269 -33177315 - L1MB3 LINE L1 0 6183 5797 1817 139 4 0 chrY 18336270 18336528 -33177056 + AluSg SINE Alu 1 259 -51 1836 31 0 18 chrY 18336538 18336766 -33176818 + L1PA3 LINE L1 5932 6155 0 21 36 0 0 chrY 18336858 18336886 -33176698 + AT_rich Low_complexity Low_complexity 1 28 0 1567 194 3 7 chrY 18336958 18337252 -33176332 + AluJb SINE Alu 1 293 -19 3612 183 92 6 chrY 18337326 18338622 -33174962 + L1MA4A LINE L1 4851 6259 -44 1870 186 3 0 chrY 18338622 18338933 -33174651 + AluJb SINE Alu 1 312 0 263 81 46 33 chrY 18338940 18339012 -33174572 + L1MA5A LINE L1 6215 6285 -12 248 294 125 22 chrY 18339333 18339469 -33174115 + MIR SINE MIR 96 245 -17 38891 68 2 3 chrY 18341186 18347341 -33166243 - L1PA4 LINE L1 0 6155 11 2135 278 70 30 chrY 18349546 18350546 -33163038 + MSTD-int LTR MaLR 284 1406 -329 2205 125 0 3 chrY 18350546 18350850 -33162734 + AluSc SINE Alu 1 303 -6 2135 278 70 30 chrY 18350850 18351175 -33162409 + MSTD-int LTR MaLR 1406 1716 -19 1244 220 104 25 chrY 18351196 18351560 -33162024 + MSTD LTR MaLR 4 396 0 297 0 0 0 chrY 18354643 18354676 -33158908 + (TG)n Simple_repeat Simple_repeat 2 34 0 1072 205 115 0 chrY 18354853 18355141 -33158443 - MER46B DNA MER2_type 0 236 41 330 111 0 0 chrY 18359063 18359117 -33154467 + Alu SINE Alu 248 301 -1 4754 248 56 9 chrY 18359333 18360972 -33152612 + L1 LINE L1 3669 5384 -762 1139 251 101 47 chrY 18361559 18362269 -33151315 + L1MB2 LINE L1 815 1478 -4906 1489 205 0 4 chrY 18362269 18362532 -33151052 - AluSq SINE Alu -45 268 7 1139 251 101 47 chrY 18362532 18362918 -33150666 + L1MB2 LINE L1 1478 1842 -4542 485 267 19 0 chrY 18363024 18363129 -33150455 + FLAM_A SINE Alu 4 110 -32 789 238 64 42 chrY 18363144 18363321 -33150263 + L1MB2 LINE L1 2041 2213 -4171 1862 145 3 40 chrY 18363321 18363618 -33149966 + AluSq SINE Alu 1 286 -27 198 0 0 0 chrY 18363618 18363640 -33149944 + (TA)n Simple_repeat Simple_repeat 2 23 0 789 238 64 42 chrY 18363640 18363865 -33149719 + L1MB2 LINE L1 2212 2453 -3931 377 184 0 0 chrY 18363900 18363976 -33149608 + L1MB2 LINE L1 2505 2580 -3802 594 214 20 97 chrY 18363990 18364383 -33149201 + L1MB2 LINE L1 3200 3562 -2820 1677 215 0 9 chrY 18364390 18364725 -33148859 - MER1B DNA MER1_type -7 332 1 2369 250 74 67 chrY 18364725 18366170 -33147414 + L1MB2 LINE L1 3556 5010 -1372 781 266 104 14 chrY 18366173 18366537 -33147047 + L1MB2 LINE L1 5042 5438 -944 2307 203 22 2 chrY 18366659 18367201 -33146383 + L1MB2 LINE L1 5490 6042 -506 234 139 0 0 chrY 18367260 18367303 -33146281 - L1MB4 LINE L1 -2 6178 6136 979 209 122 12 chrY 18367318 18367639 -33145945 + L1MB2 LINE L1 6049 6404 -3 2030 233 101 44 chrY 18367654 18368603 -33144981 + L1MB3 LINE L1 5408 6411 -8 488 56 14 0 chrY 18368616 18368688 -33144896 + (TAAAA)n Simple_repeat Simple_repeat 5 77 0 1255 202 12 24 chrY 18370248 18370500 -33143084 + AluJo SINE Alu 16 264 -48 186 43 0 0 chrY 18370500 18370523 -33143061 + (TAA)n Simple_repeat Simple_repeat 2 24 0 35 0 0 0 chrY 18372073 18372108 -33141476 + AT_rich Low_complexity Low_complexity 1 35 0 2106 149 0 3 chrY 18373225 18373591 -33139993 - AluSx SINE Alu 0 369 5 299 98 0 0 chrY 18374154 18374246 -33139338 + AluJo SINE Alu 242 333 0 2228 123 0 3 chrY 18374767 18375075 -33138509 + AluSx SINE Alu 1 307 -5 2025 117 7 0 chrY 18377210 18377546 -33136038 + AluSc SINE Alu 1 338 0 1842 160 0 3 chrY 18378390 18378690 -33134894 + AluSx SINE Alu 1 299 -13 24590 74 20 18 chrY 18380307 18383898 -33129686 - L1P LINE L1 -2546 3600 3 4119 201 56 7 chrY 18383917 18385710 -33127874 + L1MA2 LINE L1 4431 6304 0 318 214 169 70 chrY 18385786 18386029 -33127555 + MLT1F LTR MaLR 276 542 0 186 328 62 0 chrY 18386066 18386130 -33127454 - MIR SINE MIR -143 119 52 238 324 81 34 chrY 18386218 18386366 -33127218 - MER5A DNA MER1_type 0 189 35 25 31 0 0 chrY 18387072 18387104 -33126480 + AT_rich Low_complexity Low_complexity 1 32 0 231 268 144 0 chrY 18387222 18387319 -33126265 + L1ME3A LINE L1 5441 5551 -615 602 269 86 0 chrY 18387430 18387698 -33125886 + L1ME3A LINE L1 5683 5973 -197 405 238 106 12 chrY 18387798 18387958 -33125626 + L1ME3A LINE L1 5995 6169 -1 345 125 0 0 chrY 18387974 18388030 -33125554 + (CAATA)n Simple_repeat Simple_repeat 3 58 0 9167 174 40 21 chrY 18388195 18391056 -33122528 + L1PA8 LINE L1 10 2978 -3483 11290 128 10 17 chrY 18391065 18393718 -33119866 + L1PA8 LINE L1 3819 6486 -1 2128 135 0 0 chrY 18393874 18394171 -33119413 + AluSc SINE Alu 1 297 -12 391 338 68 36 chrY 18394861 18395139 -33118445 + MLT1H LTR MaLR 37 323 -226 21 0 0 0 chrY 18395434 18395455 -33118129 + AT_rich Low_complexity Low_complexity 1 21 0 230 329 0 25 chrY 18396546 18396625 -33116959 + L2 LINE L2 3195 3271 -1 339 263 109 7 chrY 18398171 18398308 -33115276 - L1MB2 LINE L1 -10 6161 6011 2086 240 63 38 chrY 18398349 18399123 -33114461 + L1MC2 LINE L1 3543 4339 -1807 1058 174 43 17 chrY 18399123 18399353 -33114231 + MER46A DNA MER2_type 1 236 0 2086 240 63 38 chrY 18399353 18399391 -33114193 + L1MC2 LINE L1 4339 4375 -1771 1087 226 26 19 chrY 18399407 18399673 -33113911 - MSTC LTR MaLR 0 428 161 315 0 0 0 chrY 18399738 18399773 -33113811 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 351 0 0 0 chrY 18399772 18399811 -33113773 + (GA)n Simple_repeat Simple_repeat 2 40 0 5959 250 62 32 chrY 18399883 18402999 -33110585 + L1MA4 LINE L1 1 3239 -3970 1236 267 7 3 chrY 18402999 18403287 -33110297 + AluJo SINE Alu 2 290 -12 24 0 0 0 chrY 18403341 18403365 -33110219 + AT_rich Low_complexity Low_complexity 1 24 0 786 268 25 7 chrY 18403380 18403656 -33109928 + L1MA4 LINE L1 3283 3563 -3645 2222 179 39 5 chrY 18403657 18404071 -33109513 + MSTA LTR MaLR 1 428 0 5900 227 31 1 chrY 18404072 18405360 -33108224 + MSTA-int LTR MaLR 3 1329 -322 * 7077 204 59 18 chrY 18405358 18405543 -33108041 + L1MA4 LINE L1 4328 4504 -2858 2075 128 7 0 chrY 18405543 18405831 -33107753 - AluSp SINE Alu -23 290 1 7077 204 59 18 chrY 18405831 18408550 -33105034 + L1MA4 LINE L1 4504 7354 -8 904 228 60 14 chrY 18408572 18408857 -33104727 + L1MC2 LINE L1 4456 4753 -1393 5623 89 15 14 chrY 18408857 18410116 -33103468 + SVA Other Other 11 1386 0 600 201 36 0 chrY 18410120 18410259 -33103325 + MST-int LTR MaLR 336 479 -1172 * 626 223 115 22 chrY 18410258 18410527 -33103057 + L1MC2 LINE L1 4745 5038 -1108 205 222 14 14 chrY 18410560 18410632 -33102952 + (TA)n Simple_repeat Simple_repeat 1 72 0 3819 197 56 66 chrY 18410659 18410720 -33102864 + L1MC2 LINE L1 5029 5089 -1255 1884 120 3 93 chrY 18410720 18411044 -33102540 - AluSc SINE Alu -14 295 1 3819 197 56 66 chrY 18411044 18412104 -33101480 + L1MC2 LINE L1 5089 6137 -207 2157 105 17 0 chrY 18412104 18412399 -33101185 + AluY SINE Alu 1 300 -11 3819 197 56 66 chrY 18412399 18412598 -33100986 + L1MC2 LINE L1 6137 6336 -8 26 0 0 0 chrY 18413166 18413192 -33100392 + AT_rich Low_complexity Low_complexity 1 26 0 1807 143 48 20 chrY 18413706 18413999 -33099585 + AluSg1 SINE Alu 1 301 -8 1702 146 18 4 chrY 18414839 18415113 -33098471 - AluSg SINE Alu -30 280 3 424 202 0 0 chrY 18415743 18415827 -33097757 + L1MA3 LINE L1 5824 5907 -398 534 186 0 29 chrY 18418760 18418862 -33094722 + FLAM_C SINE Alu 34 132 -11 301 211 83 46 chrY 18419241 18419350 -33094234 + MER31-int LTR ERV1 3171 3283 -1653 500 239 15 31 chrY 18419484 18419614 -33093970 - FLAM_A SINE Alu -5 128 1 338 275 59 78 chrY 18419643 18419921 -33093663 + MER31-int LTR ERV1 3391 3673 -1263 4730 82 2 0 chrY 18419921 18420541 -33093043 - L1PA6 LINE L1 0 6154 5534 1793 191 0 7 chrY 18420546 18420845 -33092739 + AluSx SINE Alu 1 297 -15 338 275 59 78 chrY 18420845 18420934 -33092650 + MER31-int LTR ERV1 3677 3757 -1179 1350 115 0 115 chrY 18420968 18421221 -33092363 - AluSg/x SINE Alu 0 312 89 356 306 32 0 chrY 18421278 18421402 -33092182 + MER31-int LTR ERV1 3817 3944 -992 835 201 97 7 chrY 18421440 18421788 -33091796 + MSTB1 LTR MaLR 1 428 -4 384 335 19 5 chrY 18421792 18422001 -33091583 + MER31-int LTR ERV1 3989 4200 -736 395 148 22 0 chrY 18422117 18422254 -33091330 + CT-rich Low_complexity Low_complexity 1 140 0 933 250 148 11 chrY 18422256 18422520 -33091064 - AluJo SINE Alu -1 301 2 328 218 150 8 chrY 18422544 18422677 -33090907 + MER110A LTR ERV1 61 212 -256 832 223 44 74 chrY 18422680 18423050 -33090534 - MLT1A2 LTR MaLR 0 467 15 368 244 65 8 chrY 18424980 18425103 -33088481 + FRAM SINE Alu 34 163 -3 1516 96 121 0 chrY 18425109 18425348 -33088236 + AluY SINE Alu 3 270 -41 23 68 0 0 chrY 18425800 18425844 -33087740 + AT_rich Low_complexity Low_complexity 1 44 0 2400 107 0 0 chrY 18426255 18426588 -33086996 + AluY SINE Alu 2 334 0 25 31 0 0 chrY 18427081 18427113 -33086471 + AT_rich Low_complexity Low_complexity 1 32 0 926 228 104 23 chrY 18427579 18427973 -33085611 + LTR37A LTR ERV1 1 426 0 22 80 0 0 chrY 18428076 18428126 -33085458 + AT_rich Low_complexity Low_complexity 1 50 0 315 0 0 0 chrY 18429435 18429470 -33084114 + (TG)n Simple_repeat Simple_repeat 2 36 0 923 187 18 6 chrY 18429475 18429688 -33083896 + AluSg/x SINE Alu 110 324 0 441 242 31 31 chrY 18429747 18429875 -33083709 + FLAM_C SINE Alu 3 130 -13 1399 184 8 104 chrY 18430540 18430914 -33082670 + MER2 DNA MER2_type 1 338 -7 600 228 6 13 chrY 18430924 18431082 -33082502 - MER39 LTR ERV1 -23 684 528 633 194 190 55 chrY 18431093 18431530 -33082054 + LTR54B LTR ERV1 1 496 -2 1425 219 4 0 chrY 18431579 18431848 -33081736 + AluJb SINE Alu 40 309 -3 716 259 44 9 chrY 18431851 18432079 -33081505 - MER39 LTR ERV1 -196 511 276 1892 157 3 13 chrY 18432100 18432400 -33081184 + AluSq SINE Alu 17 313 0 1846 145 35 0 chrY 18432679 18432968 -33080616 + AluSq SINE Alu 1 299 -14 2721 169 70 53 chrY 18433231 18433943 -33079641 - LTR8A LTR ERV1 0 727 4 45 62 0 0 chrY 18433964 18434044 -33079540 + AT_rich Low_complexity Low_complexity 1 80 0 989 228 29 40 chrY 18434159 18434519 -33079065 - MLT1C LTR MaLR -12 455 53 573 197 8 0 chrY 18434563 18434685 -33078899 - LTR37A LTR ERV1 -223 203 81 25 51 0 0 chrY 18435593 18435632 -33077952 + AT_rich Low_complexity Low_complexity 1 39 0 247 162 0 0 chrY 18437037 18437074 -33076510 - MER7A DNA MER2_type -3 333 297 1647 199 27 3 chrY 18437081 18437417 -33076167 - MER7A DNA MER2_type -4 342 1 2305 238 63 56 chrY 18437423 18437858 -33075726 + L1MB5 LINE L1 4218 4648 -1526 1957 95 4 0 chrY 18437858 18438110 -33075474 - AluSg SINE Alu -19 291 39 2305 238 63 56 chrY 18438110 18439270 -33074314 + L1MB5 LINE L1 4648 5828 -346 329 206 11 65 chrY 18439271 18439363 -33074221 + MER2 DNA MER2_type 1 87 -258 667 217 58 32 chrY 18439368 18439557 -33074027 + AluJb SINE Alu 87 280 -32 1316 169 29 40 chrY 18439561 18439839 -33073745 + MER2 DNA MER2_type 71 345 0 408 155 0 0 chrY 18439923 18439994 -33073590 + (CATA)n Simple_repeat Simple_repeat 3 73 0 311 308 44 0 chrY 18439994 18440085 -33073499 - L1MC4 LINE L1 -1339 6703 6609 237 195 24 12 chrY 18441693 18441775 -33071809 + CT-rich Low_complexity Low_complexity 2 84 0 207 0 0 0 chrY 18442335 18442358 -33071226 + (T)n Simple_repeat Simple_repeat 1 23 0 33 0 0 0 chrY 18442890 18442923 -33070661 + AT_rich Low_complexity Low_complexity 1 33 0 483 247 70 9 chrY 18443185 18443429 -33070155 - L1M4c LINE L1 -3608 3036 2777 310 264 141 37 chrY 18443473 18443636 -33069948 - L1M4c LINE L1 -4226 2420 2241 697 277 35 11 chrY 18443638 18443898 -33069686 - L1M4c LINE L1 -4489 2157 1892 * 1261 228 92 51 chrY 18443894 18444521 -33069063 - L1M4c LINE L1 -4871 1671 1019 570 253 173 33 chrY 18444523 18444824 -33068760 - MER92A LTR ERV1 -13 399 57 323 236 127 69 chrY 18444895 18445170 -33068414 - L1M4c LINE L1 -5520 1022 732 1449 182 47 10 chrY 18445177 18445473 -33068111 - MER2 DNA MER2_type 0 345 39 254 270 92 86 chrY 18445545 18445708 -33067876 - L1M4c LINE L1 -5842 700 537 321 326 46 23 chrY 18445878 18446096 -33067488 - L1M4c LINE L1 -6245 297 75 667 231 27 53 chrY 18446773 18446998 -33066586 + MLT1D LTR MaLR 1 219 -286 34 55 0 0 chrY 18447004 18447059 -33066525 + AT_rich Low_complexity Low_complexity 1 55 0 228 285 53 40 chrY 18447112 18447263 -33066321 + MLT1D LTR MaLR 193 345 -160 264 279 47 0 chrY 18447273 18447359 -33066225 + MER21B LTR ERV1 17 106 -757 * 343 236 0 14 chrY 18447357 18447429 -33066155 + MER21B LTR ERV1 19 89 -774 2155 261 95 14 chrY 18447433 18448147 -33065437 + MER21B LTR ERV1 44 815 -48 1989 96 68 7 chrY 18449493 18449773 -33063811 + AluY SINE Alu 1 297 -14 1033 227 112 11 chrY 18449799 18450173 -33063411 - Charlie1 DNA MER1_type -531 2230 1819 3333 102 18 20 chrY 18450198 18450697 -33062887 + L1PA7 LINE L1 5657 6154 0 392 305 34 23 chrY 18450885 18451062 -33062522 + HERVL40 LTR ERVL 4358 4536 -994 1813 111 0 11 chrY 18451119 18451380 -33062204 - AluY SINE Alu -53 258 1 762 223 51 128 chrY 18451539 18451930 -33061654 + MLT1D LTR MaLR 1 361 -144 437 276 13 26 chrY 18451957 18452113 -33061471 - LTR40a LTR ERVL -330 189 36 406 264 0 0 chrY 18452114 18452224 -33061360 - HERVL40 LTR ERVL -19 5511 5402 400 285 23 41 chrY 18453306 18453478 -33060106 - HERVL40 LTR ERVL -1334 4196 4028 346 344 113 4 chrY 18453825 18454081 -33059503 - L1M4 LINE L1 -6243 299 16 36440 77 16 9 chrY 18454181 18460288 -33053296 - L1PA5 LINE L1 -2 6152 4 2280 107 0 0 chrY 18460381 18460679 -33052905 + AluY SINE Alu 1 298 -13 1012 231 9 80 chrY 18462021 18462345 -33051239 - AluJo SINE Alu -1 301 1 228 261 0 0 chrY 18463693 18463739 -33049845 - L2 LINE L2 -10 3303 3258 22 0 0 0 chrY 18463915 18463937 -33049647 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 18464652 18464673 -33048911 + AT_rich Low_complexity Low_complexity 1 21 0 1123 235 85 22 chrY 18464673 18464945 -33048639 - AluJb SINE Alu -13 289 1 442 256 74 29 chrY 18468241 18468553 -33045031 - L1MC5 LINE L1 -184 7777 7452 24 32 0 0 chrY 18468576 18468607 -33044977 + AT_rich Low_complexity Low_complexity 1 31 0 219 132 0 75 chrY 18468684 18468737 -33044847 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 407 258 77 55 chrY 18469040 18469222 -33044362 - MIR SINE MIR 0 262 77 252 0 0 0 chrY 18469941 18469969 -33043615 + (TG)n Simple_repeat Simple_repeat 2 29 0 2001 158 0 0 chrY 18472846 18473156 -33040428 - AluSg SINE Alu 0 310 1 1413 205 36 23 chrY 18473576 18473883 -33039701 + AluJo SINE Alu 1 311 -1 31 0 0 0 chrY 18474117 18474148 -33039436 + AT_rich Low_complexity Low_complexity 1 31 0 189 65 22 43 chrY 18474320 18474366 -33039218 + (TA)n Simple_repeat Simple_repeat 1 45 0 191 320 13 39 chrY 18474741 18474819 -33038765 + MIR SINE MIR 86 161 -101 365 250 54 27 chrY 18476300 18476412 -33037172 - MER5A DNA MER1_type -73 116 2 363 44 0 0 chrY 18478320 18478365 -33035219 + (TA)n Simple_repeat Simple_repeat 2 46 0 315 0 0 0 chrY 18479839 18479874 -33033710 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2809 150 50 35 chrY 18480427 18480946 -33032638 + MER1A DNA MER1_type 1 527 0 323 296 123 51 chrY 18480998 18481251 -33032333 + L1M3 LINE L1 2 272 -6270 606 237 114 36 chrY 18481279 18481678 -33031906 + L1M3 LINE L1 3412 3851 -2793 1693 169 14 3 chrY 18481678 18481968 -33031616 + AluJo SINE Alu 1 293 -19 606 237 114 36 chrY 18481968 18482015 -33031569 + L1M3 LINE L1 3851 3893 -2751 6114 91 11 16 chrY 18482022 18482288 -33031296 - L1PA7 LINE L1 0 6154 5888 1584 171 47 7 chrY 18482288 18482562 -33031022 - AluSc SINE Alu -21 288 4 6114 91 11 16 chrY 18482562 18483429 -33030155 - L1PA7 LINE L1 -266 5888 5042 1465 103 0 0 chrY 18483429 18483632 -33029952 - L1P3 LINE L1 -385 5769 5567 660 276 0 0 chrY 18483692 18483866 -33029718 + AluJb SINE Alu 138 311 -1 229 212 91 0 chrY 18483903 18483969 -33029615 + L1M3 LINE L1 4094 4165 -2479 * 314 190 36 66 chrY 18483964 18484101 -33029483 + L1M3 LINE L1 4379 4511 -2133 951 202 147 0 chrY 18484109 18484307 -33029277 - AluJb SINE Alu -85 227 1 406 99 0 28 chrY 18484367 18484438 -33029146 + L1MA1 LINE L1 6228 6296 -6 998 265 109 33 chrY 18484788 18485531 -33028053 + L1M3 LINE L1 4823 5668 -976 290 140 0 0 chrY 18485734 18485784 -33027800 + L1M3 LINE L1 5880 5929 -752 25 0 0 0 chrY 18485784 18485809 -33027775 + AT_rich Low_complexity Low_complexity 1 25 0 4239 80 3 20 chrY 18486657 18487246 -33026338 + L1P LINE L1 1 579 -5567 275 108 0 0 chrY 18487246 18487283 -33026301 + MER66B LTR ERV1 171 207 -279 * 497 154 13 0 chrY 18487278 18487356 -33026228 + MER66A LTR ERV1 400 478 0 926 194 0 95 chrY 18487535 18487757 -33025827 + MER66A-int LTR ERV1 201 401 -6275 2743 184 43 32 chrY 18487806 18488443 -33025141 + MER66A-int LTR ERV1 401 1085 -5591 420 246 18 129 chrY 18488549 18488720 -33024864 + LTR23-int LTR ERV1 2952 3103 -3573 8182 278 43 36 chrY 18488807 18491043 -33022541 + LTR23-int LTR ERV1 1210 3428 -4328 279 0 0 0 chrY 18491043 18491074 -33022510 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 8182 278 43 36 chrY 18491074 18493656 -33019928 + LTR23-int LTR ERV1 3428 5805 -1951 2279 184 7 2 chrY 18493663 18494097 -33019487 - L1P LINE L1 -2276 3870 3435 12944 215 83 24 chrY 18494782 18497926 -33015658 + L1M1 LINE L1 11 3339 -4226 45 62 0 0 chrY 18497932 18498012 -33015572 + AT_rich Low_complexity Low_complexity 1 80 0 36821 97 12 9 chrY 18498012 18503947 -33009637 - L1PA5 LINE L1 -3 6151 2 24 77 0 0 chrY 18503958 18504010 -33009574 + AT_rich Low_complexity Low_complexity 1 52 0 2301 226 83 54 chrY 18504010 18505367 -33008217 + L1M1 LINE L1 3292 4687 -2878 * 24062 86 6 5 chrY 18505363 18508677 -33004907 - L1P LINE L1 -2825 3321 4 1698 273 55 24 chrY 18508689 18509540 -33004044 - L1 LINE L1 -2591 3612 2735 367 287 36 12 chrY 18509561 18509728 -33003856 - L1 LINE L1 -2721 3425 3255 * 4695 239 63 12 chrY 18509725 18512263 -33001321 - L1PBb LINE L1 -3478 2725 42 311 98 0 0 chrY 18512264 18512305 -33001279 + Alu SINE Alu 2 42 -259 338 343 27 14 chrY 18512328 18512474 -33001110 - L1PBa LINE L1 -5691 1172 1025 1242 333 46 30 chrY 18512556 18513381 -33000203 - L1PBa LINE L1 -6001 862 25 325 224 40 24 chrY 18513527 18513652 -32999932 + LTR23-int LTR ERV1 2596 2722 -2401 1137 252 11 7 chrY 18513673 18513951 -32999633 + AluJo SINE Alu 3 281 -31 2182 189 48 22 chrY 18513972 18514513 -32999071 + LTR23-int LTR ERV1 3904 4458 -1873 10939 94 6 1 chrY 18514515 18516831 -32996753 - L1PA6 LINE L1 -3 7589 5258 8717 89 6 2 chrY 18516832 18518089 -32995495 - L1PA6 LINE L1 -2257 5327 4067 5655 171 28 31 chrY 18518081 18519225 -32994359 - L1PA6 LINE L1 -4684 2900 1760 * 3618 295 66 21 chrY 18519244 18520554 -32993030 - MER52-int LTR ERV1 -826 8093 6725 * 13705 241 33 15 chrY 18520551 18521596 -32991988 - MER52-int LTR ERV1 -576 6515 5490 2192 99 0 0 chrY 18521596 18521917 -32991667 - AluY SINE Alu 0 321 1 13705 241 33 15 chrY 18521917 18524220 -32989364 - MER52-int LTR ERV1 -1601 5490 3166 275 197 15 15 chrY 18524231 18524297 -32989287 + MST-int LTR MaLR 7 72 -1579 * 6021 244 45 17 chrY 18524287 18525767 -32987817 - L1PA6 LINE L1 -5978 1603 82 28 29 0 0 chrY 18525837 18525872 -32987712 + AT_rich Low_complexity Low_complexity 1 35 0 4898 194 38 8 chrY 18526047 18527815 -32985769 - L1MA2 LINE L1 0 6304 4478 4177 242 40 21 chrY 18527809 18529872 -32983712 - L1PA13 LINE L1 -4 6159 4058 * 207 0 0 0 chrY 18529872 18529895 -32983689 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4177 242 40 21 chrY 18529895 18530217 -32983367 - L1PA13 LINE L1 -2105 4058 3744 15715 109 9 5 chrY 18530218 18532575 -32981009 - HERVK9 LTR ERVK -317 5599 3232 1756 114 4 0 chrY 18532578 18532842 -32980742 - HERVK9 LTR ERVK -4027 1889 1625 3919 120 24 18 chrY 18532842 18533500 -32980084 - HERVK9 LTR ERVK -5254 662 1 2854 129 75 8 chrY 18533500 18533979 -32979605 - MER9 LTR ERVK 0 511 1 231 220 0 0 chrY 18533979 18534029 -32979555 - LTR47B LTR ERVL -391 52 3 1749 169 86 21 chrY 18534061 18534399 -32979185 - THE1B LTR MaLR -2 362 3 3739 169 10 26 chrY 18534646 18535443 -32978141 + L1PA7 LINE L1 1118 1901 -4245 5428 125 17 14 chrY 18535443 18536901 -32976683 + L1PA7 LINE L1 4685 6153 -1 1125 244 49 67 chrY 18537918 18538369 -32975215 - LTR47B LTR ERVL 0 443 1 490 294 0 0 chrY 18538369 18538529 -32975055 + MER57A LTR ERV1 244 403 0 * 1792 258 33 46 chrY 18538529 18539063 -32974521 + MER6 DNA MER2_type 94 620 -245 1030 244 30 3 chrY 18539081 18539409 -32974175 + L1PA10 LINE L1 1767 2103 -4684 3571 227 15 8 chrY 18539428 18540346 -32973238 + L1PA10 LINE L1 1992 2916 -3881 * 6572 31 0 1 chrY 18540345 18541222 -32972362 - L1P LINE L1 -726 5429 4553 6344 18 0 0 chrY 18541222 18541942 -32971642 + L1PA3 LINE L1 5430 6154 -1 273 135 0 0 chrY 18541962 18542014 -32971570 + (A)n Simple_repeat Simple_repeat 1 52 0 14969 177 24 5 chrY 18542014 18545873 -32967711 + L1PA10 LINE L1 2905 6814 -5 207 186 0 0 chrY 18545875 18545918 -32967666 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 622 223 26 56 chrY 18545934 18545968 -32967616 + MER6 DNA MER2_type 640 673 -192 1826 148 0 7 chrY 18545968 18546263 -32967321 - AluSc SINE Alu 0 304 12 622 223 26 56 chrY 18546263 18546459 -32967125 + MER6 DNA MER2_type 673 865 0 * 1316 268 86 4 chrY 18546459 18546979 -32966605 + MER67C LTR ERV1 144 706 -4 517 303 70 43 chrY 18547107 18547480 -32966104 + MLT1B LTR MaLR 8 390 0 387 161 0 62 chrY 18547969 18548050 -32965534 - MER1B DNA MER1_type -30 309 234 2650 152 2 15 chrY 18548050 18548531 -32965053 - L1MA9 LINE L1 -324 5988 5514 627 263 137 0 chrY 18548545 18548736 -32964848 - MER1B DNA MER1_type -77 220 1 180 0 0 0 chrY 18550758 18550778 -32962806 + (A)n Simple_repeat Simple_repeat 1 20 0 717 172 83 10 chrY 18550853 18551045 -32962539 - Tigger3b DNA MER2_type -682 549 344 478 311 89 0 chrY 18551045 18551225 -32962359 - Tigger3b DNA MER2_type -1035 196 1 210 91 0 0 chrY 18551719 18551752 -32961832 + (T)n Simple_repeat Simple_repeat 1 33 0 7628 11 0 0 chrY 18551755 18552804 -32960780 - L1HS LINE L1 -1 6154 5106 411 219 31 0 chrY 18556498 18556594 -32956990 - LTR55 LTR ERV -158 390 292 696 288 100 39 chrY 18556746 18557257 -32956327 - LTR55 LTR ERV -6 542 1 196 26 26 53 chrY 18557360 18557398 -32956186 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 192 97 0 0 chrY 18558082 18558113 -32955471 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chrY 18558206 18558234 -32955350 + AT_rich Low_complexity Low_complexity 1 28 0 590 144 0 10 chrY 18558235 18558339 -32955245 - AluSc SINE Alu -1 308 206 1315 85 30 0 chrY 18558339 18558539 -32955045 - L1P LINE L1 -1800 4346 4141 339 169 0 0 chrY 18558539 18558598 -32954986 - AluSq SINE Alu -93 210 152 13305 117 27 2 chrY 18558610 18561495 -32952089 - L1PA7 LINE L1 0 6154 3190 10918 171 61 83 chrY 18561495 18564522 -32949062 - L1PA7 LINE L1 -3173 2973 12 867 123 8 0 chrY 18564533 18564655 -32948929 - AluSg SINE Alu -175 135 13 350 307 8 8 chrY 18564681 18564808 -32948776 + L1MA7 LINE L1 374 500 -5803 * 543 274 93 25 chrY 18564805 18565162 -32948422 + L1MA7 LINE L1 1008 1392 -4911 1819 129 15 75 chrY 18565162 18565494 -32948090 + AluSx SINE Alu 1 312 0 30 45 0 0 chrY 18565607 18565651 -32947933 + AT_rich Low_complexity Low_complexity 1 44 0 778 309 61 29 chrY 18565660 18566362 -32947222 + L1M4c LINE L1 1102 1826 -4558 253 240 0 91 chrY 18566775 18566929 -32946655 + L1M4c LINE L1 2405 2544 -3838 361 348 97 4 chrY 18566991 18567238 -32946346 + L1M4c LINE L1 2518 2787 -3595 4716 221 58 50 chrY 18567430 18568040 -32945544 + L1MA7 LINE L1 3167 3771 -2756 4456 124 63 23 chrY 18568040 18568789 -32944795 - LTR17 LTR ERV1 -1 779 1 4716 221 58 50 chrY 18568789 18569782 -32943802 + L1MA7 LINE L1 3771 4755 -1772 1792 141 65 0 chrY 18569782 18570073 -32943511 + AluSq SINE Alu 1 310 -3 4716 221 58 50 chrY 18570073 18571619 -32941965 + L1MA7 LINE L1 4755 6333 -194 1204 276 92 0 chrY 18571717 18572174 -32941410 + Cheshire DNA MER1_type 580 1078 -1342 1233 208 23 66 chrY 18572186 18572551 -32941033 - MLT1A1 LTR MaLR -12 353 1 233 128 0 0 chrY 18572557 18572596 -32940988 + Cheshire DNA MER1_type 1080 1118 -1302 229 167 0 21 chrY 18572597 18572645 -32940939 + L1M2 LINE L1 5707 5753 -547 275 0 0 28 chrY 18572693 18572729 -32940855 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 539 281 37 14 chrY 18572747 18572964 -32940620 + Cheshire DNA MER1_type 1204 1425 -995 529 220 83 116 chrY 18572976 18573153 -32940431 + MLT1A1 LTR MaLR 6 166 -199 8009 66 4 2 chrY 18573153 18574120 -32939464 - LTR5 LTR ERVK 0 969 1 529 220 83 116 chrY 18574120 18574314 -32939270 + MLT1A1 LTR MaLR 166 365 0 719 271 49 8 chrY 18574314 18574561 -32939023 + MLT1A1-int LTR MaLR 1 257 -1478 3967 166 97 0 chrY 18574561 18575388 -32938196 + L1PA11 LINE L1 3643 4549 -1597 2983 127 44 21 chrY 18575391 18575917 -32937667 + L1PA11 LINE L1 5635 6172 -2 247 264 47 0 chrY 18576497 18576603 -32936981 + L1MC4 LINE L1 7802 7912 -130 240 86 0 0 chrY 18576628 18576663 -32936921 + (GA)n Simple_repeat Simple_repeat 2 36 0 1792 217 59 63 chrY 18576787 18577410 -32936174 + MLT1A1-int LTR MaLR 267 887 -848 252 203 89 0 chrY 18577452 18577531 -32936053 + MSTD LTR MaLR 311 396 0 524 203 94 45 chrY 18577533 18577735 -32935849 + Cheshire DNA MER1_type 1434 1645 -775 375 273 46 43 chrY 18578663 18578945 -32934639 + L1MB5 LINE L1 4678 4960 -1186 2249 107 0 3 chrY 18585071 18585370 -32928214 + AluY SINE Alu 1 298 -13 2266 216 79 26 chrY 18585943 18586624 -32926960 + Tigger3b DNA MER2_type 3 719 -512 5015 139 27 21 chrY 18586631 18587978 -32925606 + L1PA13 LINE L1 4780 6137 -26 1896 190 74 23 chrY 18587988 18588472 -32925112 + Tigger3b DNA MER2_type 724 1232 0 878 132 0 0 chrY 18588808 18588937 -32924647 - AluSp/q SINE Alu -7 306 178 198 0 0 0 chrY 18590766 18590788 -32922796 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 279 221 26 0 chrY 18591001 18591078 -32922506 + L1M4 LINE L1 350 428 -6114 213 39 0 0 chrY 18591181 18591207 -32922377 + (GA)n Simple_repeat Simple_repeat 1 26 0 429 268 38 60 chrY 18591250 18591433 -32922151 + L1M4 LINE L1 561 739 -5803 2614 221 64 25 chrY 18591614 18592368 -32921216 + L1MB5 LINE L1 5380 6162 -12 1459 261 62 20 chrY 18592387 18592561 -32921023 + L1M4 LINE L1 926 1091 -5555 2739 13 0 0 chrY 18592561 18592862 -32920722 + AluYa5 SINE Alu 1 301 -10 1459 261 62 20 chrY 18592862 18593770 -32919814 + L1M4 LINE L1 1091 2105 -4541 192 207 122 61 chrY 18593931 18594013 -32919571 - MIR3 SINE MIR -3 205 119 3909 207 38 45 chrY 18595140 18596394 -32917190 + L1 LINE L1 4089 5333 -813 2050 234 8 8 chrY 18596393 18596991 -32916593 + L1 LINE L1 4396 4993 -1153 * 844 181 0 0 chrY 18596991 18597118 -32916466 + FLAM_C SINE Alu 1 127 -6 578 208 15 39 chrY 18597211 18597341 -32916243 + FRAM SINE Alu 28 154 -22 1011 240 79 13 chrY 18597341 18597720 -32915864 + L1 LINE L1 4985 5388 -758 2053 104 55 0 chrY 18597720 18598029 -32915555 + L1PA13 LINE L1 5825 6150 -13 * 10532 100 12 16 chrY 18598024 18600390 -32913194 + L1PA7 LINE L1 3776 6154 0 307 327 100 13 chrY 18600639 18600789 -32912795 + L1MEd LINE L1 90 252 -5953 320 288 160 33 chrY 18601692 18601998 -32911586 + L1MEd LINE L1 1291 1635 -4761 2141 127 3 0 chrY 18602029 18602328 -32911256 - AluY SINE Alu -9 302 3 2091 95 0 11 chrY 18602602 18602926 -32910658 + AluSx SINE Alu 1 321 0 21 57 0 0 chrY 18603240 18603275 -32910309 + AT_rich Low_complexity Low_complexity 1 35 0 308 272 136 0 chrY 18603611 18603714 -32909870 + L1ME LINE L1 5627 5743 -427 918 185 62 14 chrY 18604340 18604551 -32909033 - Tigger3(Golem) DNA MER2_type -46 2983 2763 23 0 0 0 chrY 18607109 18607132 -32906452 + AT_rich Low_complexity Low_complexity 1 23 0 298 230 30 0 chrY 18607132 18607232 -32906352 + (CATA)n Simple_repeat Simple_repeat 2 104 0 1851 149 7 13 chrY 18607262 18607563 -32906021 + AluSx SINE Alu 1 299 -13 727 258 49 24 chrY 18607594 18607968 -32905616 + L1ME LINE L1 5357 5745 -417 23 78 0 0 chrY 18609960 18610011 -32903573 + AT_rich Low_complexity Low_complexity 1 51 0 769 283 108 35 chrY 18610317 18610717 -32902867 + MER74B LTR ERVL 58 486 -136 1810 183 7 0 chrY 18611501 18611796 -32901788 - AluSx SINE Alu -15 297 1 929 293 67 37 chrY 18612258 18612723 -32900861 + MER74B LTR ERVL 70 548 -74 256 246 29 0 chrY 18612664 18612733 -32900851 - MER88 LTR ERVL -313 151 81 * 571 235 8 0 chrY 18612861 18612980 -32900604 + FLAM_A SINE Alu 2 121 -12 294 291 75 37 chrY 18613529 18613663 -32899921 + MIR SINE MIR 20 158 -104 840 171 21 0 chrY 18613668 18613808 -32899776 + AluSc SINE Alu 3 145 -164 1487 138 14 0 chrY 18613959 18614177 -32899407 + AluSc SINE Alu 1 221 -88 207 0 0 0 chrY 18614208 18614231 -32899353 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2124 108 10 3 chrY 18614374 18614662 -32898922 + AluY SINE Alu 1 290 -21 1926 155 0 0 chrY 18616217 18616508 -32897076 + AluSx SINE Alu 3 293 -19 2265 240 76 55 chrY 18619765 18621229 -32892355 - L1M4 LINE L1 -407 7190 5691 8245 201 24 13 chrY 18621241 18623380 -32890204 - L1PA12 LINE L1 -1 7605 5490 3212 176 40 11 chrY 18623380 18624005 -32889579 - LTR9B LTR ERV1 -1 643 1 8245 201 24 13 chrY 18624005 18624290 -32889294 - L1PA12 LINE L1 -2116 5490 5114 192 40 0 0 chrY 18624290 18624315 -32889269 + (TGG)n Simple_repeat Simple_repeat 2 26 0 8245 201 24 13 chrY 18624315 18624482 -32889102 - L1PA12 LINE L1 -2492 5114 4950 25828 51 11 2 chrY 18624537 18627783 -32885801 - L1P LINE L1 -2865 3281 9 1816 252 14 12 chrY 18627820 18628320 -32885264 - L1PA12 LINE L1 -3010 4574 4074 * 4501 253 17 24 chrY 18628319 18629385 -32884199 - L1PA12 LINE L1 -6336 1245 187 1337 231 120 19 chrY 18629395 18630318 -32883266 - L1M4 LINE L1 -3526 4039 3001 4043 215 20 18 chrY 18630325 18631182 -32882402 - L1PA15 LINE L1 -22 6794 5934 2087 120 26 13 chrY 18631182 18631490 -32882094 - AluSp SINE Alu 0 313 2 4043 215 20 18 chrY 18631490 18631921 -32881663 - L1PA15 LINE L1 -882 5934 5505 3337 83 40 6 chrY 18631929 18632763 -32880821 + MER11A LTR ERVK 38 1126 -140 5933 251 56 32 chrY 18632769 18633598 -32879986 - L1PA15 LINE L1 -2777 4020 3212 2205 102 17 0 chrY 18633598 18633893 -32879691 + AluSx SINE Alu 9 308 -4 5933 251 56 32 chrY 18633893 18634305 -32879279 - L1PA15 LINE L1 -3585 3212 2811 243 61 0 0 chrY 18634305 18634338 -32879246 + (TTG)n Simple_repeat Simple_repeat 2 34 0 5933 251 56 32 chrY 18634338 18635082 -32878502 - L1PA15 LINE L1 -3986 2811 2086 1594 147 28 0 chrY 18635082 18635333 -32878251 - AluSg1 SINE Alu -15 294 37 5933 251 56 32 chrY 18635333 18635609 -32877975 - L1PA15 LINE L1 -4711 2086 1818 2160 105 0 3 chrY 18635609 18635917 -32877667 - AluSq SINE Alu 0 307 1 5933 251 56 32 chrY 18635917 18636815 -32876769 - L1PA15 LINE L1 -4979 1818 762 30 83 0 0 chrY 18637808 18637880 -32875704 + AT_rich Low_complexity Low_complexity 1 72 0 2821 238 39 6 chrY 18638531 18639324 -32874260 + L1MB7 LINE L1 5366 6184 0 23 0 0 0 chrY 18639611 18639634 -32873950 + AT_rich Low_complexity Low_complexity 1 23 0 327 200 25 42 chrY 18639839 18639959 -32873625 - LTR37A LTR ERV1 -299 127 10 998 220 45 128 chrY 18640236 18640340 -32873244 - MSTB1 LTR MaLR -3 429 318 1830 152 25 0 chrY 18640340 18640623 -32872961 + AluSp SINE Alu 1 290 -23 998 220 45 128 chrY 18640623 18640986 -32872598 - MSTB1 LTR MaLR -114 318 1 314 187 54 6 chrY 18641246 18641412 -32872172 + (TA)n Simple_repeat Simple_repeat 2 175 0 332 343 49 25 chrY 18641848 18642052 -32871532 + MIR SINE MIR 41 249 -13 491 321 44 29 chrY 18643356 18643630 -32869954 - LTR40a LTR ERVL 0 519 242 1231 260 73 29 chrY 18643682 18644243 -32869341 + L1PA15-16 LINE L1 2029 2614 -4235 2243 111 10 0 chrY 18644308 18644615 -32868969 - AluY SINE Alu -1 310 1 271 157 59 0 chrY 18644804 18644855 -32868729 + Tigger1 DNA MER2_type 669 722 -1696 1009 188 64 142 chrY 18644888 18645324 -32868260 + LTR1B LTR ERV1 335 736 -90 229 312 13 26 chrY 18645377 18645454 -32868130 + L1M3e LINE L1 635 710 -6320 429 282 150 32 chrY 18645607 18645954 -32867630 + L1M3e LINE L1 2315 2702 -4405 2308 203 38 115 chrY 18645954 18646355 -32867229 + Tigger1 DNA MER2_type 1 431 -1987 1592 47 0 0 chrY 18646355 18646548 -32867036 + L1PA5 LINE L1 5955 6147 -7 2308 203 38 115 chrY 18646548 18646767 -32866817 + Tigger1 DNA MER2_type 431 537 -1881 1537 124 46 118 chrY 18646767 18647090 -32866494 - AluSq SINE Alu -13 300 1 2308 203 38 115 chrY 18647090 18647340 -32866244 + Tigger1 DNA MER2_type 537 805 -1613 455 334 106 25 chrY 18647413 18647733 -32865851 + L1M2 LINE L1 97 442 -6407 1054 242 27 50 chrY 18648228 18648525 -32865059 + L1PA15-16 LINE L1 444 733 -6116 346 201 53 118 chrY 18649002 18649171 -32864413 + L1PA15-16 LINE L1 1436 1593 -5257 723 270 42 28 chrY 18649220 18649576 -32864008 + L1PA15-16 LINE L1 1731 2091 -4758 3808 299 20 8 chrY 18649582 18650570 -32863014 + L1PA12 LINE L1 5 1004 -6577 8258 223 18 47 chrY 18650570 18651395 -32862189 + L1PA12 LINE L1 2724 3571 -4013 1790 182 0 10 chrY 18651395 18651702 -32861882 + AluSg SINE Alu 5 308 -2 8258 223 18 47 chrY 18651702 18651816 -32861768 + L1PA12 LINE L1 3571 3687 -3897 229 104 0 0 chrY 18651816 18651864 -32861720 + LTR66 LTR ERVL 392 439 -171 8258 223 18 47 chrY 18651864 18653229 -32860355 + L1PA12 LINE L1 3687 5072 -2512 4649 147 22 3 chrY 18653349 18654082 -32859502 + L1PA5 LINE L1 2 748 -5398 * 21151 64 7 1 chrY 18654080 18657365 -32856219 + L1PA5 LINE L1 2589 5894 -260 228 200 0 0 chrY 18657363 18657403 -32856181 + L1PA15-16 LINE L1 2919 2958 -3891 * 5311 289 51 27 chrY 18657371 18658732 -32854852 + L1 LINE L1 2927 4254 -2595 1657 134 3 92 chrY 18658732 18659038 -32854546 - AluSg SINE Alu -15 295 17 5311 289 51 27 chrY 18659038 18659772 -32853812 + L1 LINE L1 4254 5099 -1750 1048 223 88 18 chrY 18659772 18660045 -32853539 + AluSg SINE Alu 1 292 -8 5311 289 51 27 chrY 18660045 18660552 -32853032 + L1 LINE L1 5099 5592 -1257 3735 107 20 3 chrY 18660550 18661200 -32852384 - L1PA7 LINE L1 -721 5433 4773 * 4931 95 15 1 chrY 18661200 18661886 -32851698 + L1PA7 LINE L1 5451 6146 -8 22 0 0 0 chrY 18661886 18661908 -32851676 + AT_rich Low_complexity Low_complexity 1 22 0 783 291 71 10 chrY 18661948 18662567 -32851017 + L1 LINE L1 2869 3525 -2621 3674 269 109 22 chrY 18662595 18663629 -32849955 + MSTB-int LTR MaLR 191 1370 -281 1586 201 7 0 chrY 18663629 18663928 -32849656 - AluSx SINE Alu -11 301 1 3674 269 109 22 chrY 18663928 18664237 -32849347 + MSTB-int LTR MaLR 1370 1651 0 1600 250 29 10 chrY 18664239 18664655 -32848929 + MSTB LTR MaLR 3 426 0 807 261 74 7 chrY 18664658 18664957 -32848627 + L1MA8 LINE L1 2143 2461 -3685 333 313 0 0 chrY 18664996 18665095 -32848489 + L1MC4 LINE L1 6595 6693 -1349 502 292 31 9 chrY 18665095 18665321 -32848263 + L1MA8 LINE L1 2432 2662 -3484 1287 164 107 46 chrY 18665322 18665602 -32847982 - AluSq SINE Alu -16 297 1 1552 225 20 35 chrY 18665631 18666035 -32847549 + L1PA16 LINE L1 5465 5862 -304 25594 118 9 3 chrY 18666069 18671311 -32842273 - L1PA6 LINE L1 -1 6468 1211 656 305 3 49 chrY 18671312 18671620 -32841964 + L1PA16 LINE L1 5859 6152 -14 5758 266 61 21 chrY 18671652 18675121 -32838463 + L1MA8 LINE L1 2676 6286 -5 272 264 44 0 chrY 18675153 18675244 -32838340 + L1 LINE L1 3525 3619 -2527 19088 101 10 4 chrY 18675293 18681270 -32832314 + L1PA6 LINE L1 1 6154 0 410 269 19 0 chrY 18681345 18681449 -32832135 - HERVI LTR ERV1 -332 7453 7348 47 33 0 0 chrY 18681515 18681576 -32832008 + AT_rich Low_complexity Low_complexity 1 61 0 1347 278 72 34 chrY 18681614 18682269 -32831315 + L1 LINE L1 3641 4320 -1826 925 191 41 14 chrY 18682298 18682518 -32831066 - L1MA1 LINE L1 0 6302 6077 1295 275 24 2 chrY 18682528 18682872 -32830712 + L1PA14 LINE L1 23 468 -7113 1198 140 0 0 chrY 18682874 18683038 -32830546 + AluSc SINE Alu 3 166 -143 3515 86 16 14 chrY 18683038 18683547 -32830037 - LTR10D LTR ERV1 -1 512 3 13265 238 36 43 chrY 18683556 18687053 -32826531 - LTR10D-int LTR ERV1 -1 7758 3310 1807 145 0 4 chrY 18687053 18687322 -32826262 + AluY SINE Alu 13 280 -31 13265 238 36 43 chrY 18687322 18689757 -32823827 - LTR10D-int LTR ERV1 -4449 3310 857 1212 282 35 46 chrY 18690148 18690691 -32822893 - HERVI LTR ERV1 -6653 1132 596 774 283 16 41 chrY 18690806 18691120 -32822464 - HERVI LTR ERV1 -7456 329 24 3736 74 0 25 chrY 18691146 18691672 -32821912 - LTR10D LTR ERV1 0 513 1 894 133 0 0 chrY 18691672 18691815 -32821769 + AluSc SINE Alu 164 306 -3 796 196 0 0 chrY 18691815 18691953 -32821631 + L1PA14 LINE L1 457 594 -6987 1395 251 32 111 chrY 18691953 18692618 -32820966 - LTR9 LTR ERV1 0 612 1 3993 240 22 28 chrY 18692618 18695822 -32817762 + L1PA14 LINE L1 591 3813 -3786 1815 167 3 3 chrY 18695822 18696127 -32817457 + AluSc SINE Alu 1 305 -4 3993 240 22 28 chrY 18696127 18699904 -32813680 + L1PA14 LINE L1 3813 7596 -3 1444 286 52 12 chrY 18699917 18700647 -32812937 + L1MA8 LINE L1 4498 5256 -890 42 0 0 0 chrY 18700740 18700782 -32812802 + AT_rich Low_complexity Low_complexity 1 42 0 2110 249 39 36 chrY 18700782 18701456 -32812128 + L1MA8 LINE L1 5263 5938 -353 21 36 0 0 chrY 18701467 18701495 -32812089 + AT_rich Low_complexity Low_complexity 1 28 0 636 288 104 0 chrY 18701578 18701800 -32811784 + L1PBa LINE L1 1 245 -6618 2640 152 10 112 chrY 18701800 18702129 -32811455 + MER41A LTR ERV1 2 363 -191 547 28 0 0 chrY 18702129 18702200 -32811384 + L1PA3 LINE L1 6080 6150 -5 2640 152 10 112 chrY 18702200 18702441 -32811143 + MER41A LTR ERV1 363 509 -45 7007 114 8 19 chrY 18702441 18703524 -32810060 - MER11C LTR ERVK 0 1071 1 2640 152 10 112 chrY 18703524 18703559 -32810025 + MER41A LTR ERV1 509 546 -8 1042 258 55 18 chrY 18703569 18703898 -32809686 + L1PBa LINE L1 243 583 -6280 804 237 11 11 chrY 18703926 18704112 -32809472 - MER61E LTR ERV1 -43 526 341 435 263 15 30 chrY 18704294 18704427 -32809157 - LTR25 LTR ERV1 -432 362 232 7979 193 47 21 chrY 18704544 18705497 -32808087 - LTR9-int LTR ERV1 -3 6993 6066 7725 74 19 0 chrY 18705497 18706485 -32807099 - LTR13 LTR ERVK 0 1007 1 7979 193 47 21 chrY 18706485 18707726 -32805858 - LTR9-int LTR ERV1 -930 6066 2216 39694 76 5 3 chrY 18707771 18713910 -32799674 - L1PA4 LINE L1 0 6155 7 7948 213 53 53 chrY 18713917 18716391 -32797193 - MER61E-int LTR ERV1 -2061 4935 2321 904 253 0 0 chrY 18716392 18716582 -32797002 - MER61E-int LTR ERV1 -6718 2201 2012 1028 263 68 11 chrY 18716598 18717084 -32796500 - MER61E-int LTR ERV1 -5323 1673 986 1981 147 7 0 chrY 18717087 18717379 -32796205 - AluSq SINE Alu -17 296 3 2719 243 51 33 chrY 18717383 18718223 -32795361 - MER61E-int LTR ERV1 -5910 1086 232 506 213 41 16 chrY 18718224 18718346 -32795238 - MER61E LTR ERV1 -102 467 343 303 262 58 10 chrY 18718529 18718632 -32794952 - LTR25 LTR ERV1 -438 356 249 7401 208 45 42 chrY 18718721 18719018 -32794566 + L1PBa LINE L1 586 881 -5982 354 177 16 0 chrY 18719018 18719080 -32794504 - AluSq/x SINE Alu -162 141 79 7401 208 45 42 chrY 18719080 18720516 -32793068 + L1PBa LINE L1 881 2385 -4478 3965 186 8 50 chrY 18720516 18721344 -32792240 + LTR25 LTR ERV1 1 794 0 2023 202 57 17 chrY 18721359 18721967 -32791617 + L1PBa LINE L1 2279 2962 -3900 1870 167 3 10 chrY 18721969 18722274 -32791310 + AluSg SINE Alu 3 305 -5 1652 271 26 8 chrY 18722280 18722815 -32790769 + L1 LINE L1 3041 3585 -3277 1417 185 36 125 chrY 18722819 18723064 -32790520 + MLT2A2 LTR ERVL 1 266 -288 2153 132 0 0 chrY 18723064 18723368 -32790216 + AluY SINE Alu 2 305 -6 1417 185 36 125 chrY 18723368 18723708 -32789876 + MLT2A2 LTR ERVL 266 554 0 40464 56 24 2 chrY 18723772 18729794 -32783790 + L1PA3 LINE L1 2 6152 -3 1171 261 32 2 chrY 18729788 18730191 -32783393 + L1 LINE L1 2920 3334 -2812 * 955 174 6 0 chrY 18730194 18730361 -32783223 - AluY SINE Alu -143 168 1 2108 257 60 22 chrY 18730368 18731330 -32782254 - L1PA13 LINE L1 -4113 2684 1677 23 78 0 0 chrY 18731344 18731395 -32782189 + AT_rich Low_complexity Low_complexity 1 51 0 196 310 270 26 chrY 18731833 18732059 -32781525 - L3 LINE CR1 -26 1551 1271 336 260 65 91 chrY 18732062 18732293 -32781291 - L1MC4 LINE L1 -110 7932 7708 1069 165 0 21 chrY 18732308 18732496 -32781088 - AluY SINE Alu -10 301 118 725 135 0 0 chrY 18732602 18732713 -32780871 - AluY SINE Alu -200 111 1 631 151 0 25 chrY 18732716 18732835 -32780749 - L1PB3 LINE L1 -1 6153 6038 22 0 0 0 chrY 18732842 18732864 -32780720 + AT_rich Low_complexity Low_complexity 1 22 0 640 249 35 6 chrY 18732877 18733046 -32780538 - L1PB4 LINE L1 -104 6052 5879 * 1119 289 47 25 chrY 18733043 18733676 -32779908 - L1 LINE L1 -2647 4918 4272 2807 202 78 6 chrY 18733772 18734426 -32779158 - L1MA2 LINE L1 0 6304 5604 4776 150 56 68 chrY 18734443 18734720 -32778864 - L1 LINE L1 -4282 3283 3004 194 0 39 0 chrY 18734720 18734746 -32778838 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4776 150 56 68 chrY 18734746 18734988 -32778596 - L1 LINE L1 -4561 3004 2761 2626 30 0 3 chrY 18734988 18735290 -32778294 - AluY SINE Alu -10 301 1 4776 150 56 68 chrY 18735290 18735471 -32778113 - L1 LINE L1 -4804 2761 2579 2045 120 0 29 chrY 18735471 18735779 -32777805 - AluY SINE Alu -12 299 1 4776 150 56 68 chrY 18735779 18736329 -32777255 - L1 LINE L1 -4986 2579 2046 810 229 37 18 chrY 18736423 18736641 -32776943 + L1M1 LINE L1 9 230 -7335 445 186 20 39 chrY 18736645 18736747 -32776837 + L1M1 LINE L1 1961 2060 -5505 240 360 69 0 chrY 18736751 18736940 -32776644 - L1 LINE L1 -3381 2765 2564 1648 306 48 25 chrY 18736971 18737862 -32775722 - L1PA15-16 LINE L1 -3717 3132 2216 844 241 48 52 chrY 18737904 18738324 -32775260 - L1PA15-16 LINE L1 -4626 2223 1806 3150 227 61 21 chrY 18738325 18739230 -32774354 + L1PB3 LINE L1 824 1776 -5087 4630 113 20 25 chrY 18739234 18739925 -32773659 - LTR12 LTR ERV1 0 688 1 3037 262 73 16 chrY 18739936 18740358 -32773226 + L1PB3 LINE L1 2112 2509 -4353 2088 132 0 25 chrY 18740358 18740676 -32772908 + AluSp SINE Alu 1 310 -3 3037 262 73 16 chrY 18740676 18742193 -32771391 + L1PB3 LINE L1 2509 4270 -2592 2591 131 49 39 chrY 18742194 18742681 -32770903 + LTR22B LTR ERVK 1 492 0 4013 173 42 4 chrY 18742683 18743406 -32770178 + HERVK22 LTR ERVK 3 752 -6085 26 0 0 0 chrY 18743817 18743843 -32769741 + AT_rich Low_complexity Low_complexity 1 26 0 706 218 35 7 chrY 18743843 18743985 -32769599 + HERVK22 LTR ERVK 2327 2472 -4365 525 202 0 0 chrY 18743993 18744092 -32769492 + HERVK22 LTR ERVK 3723 3821 -3016 18235 129 34 0 chrY 18744093 18746831 -32766753 + HERVK22 LTR ERVK 4008 6836 -1 2681 124 45 31 chrY 18746831 18747315 -32766269 + LTR22B LTR ERVK 2 492 0 2749 233 36 18 chrY 18747315 18748084 -32765500 + L1PB3 LINE L1 4266 5048 -1814 2644 190 42 28 chrY 18748086 18748660 -32764924 + L1PB3 LINE L1 6288 6869 -1 1181 255 67 2 chrY 18748684 18749150 -32764434 + L1MA5 LINE L1 4739 5234 -912 1639 186 60 26 chrY 18749244 18749594 -32763990 + THE1C LTR MaLR 14 375 0 2371 226 81 34 chrY 18749606 18750479 -32763105 + L1MA5 LINE L1 5387 6300 0 1101 269 54 16 chrY 18750487 18750910 -32762674 + L1 LINE L1 2630 3068 -3078 1334 256 10 3 chrY 18750910 18751215 -32762369 - L1PA16 LINE L1 -6 6160 5854 4233 241 67 56 chrY 18751227 18752428 -32761156 + L1 LINE L1 3160 4346 -1800 1626 108 13 17 chrY 18752428 18752659 -32760925 + AluY SINE Alu 5 234 -77 4233 241 67 56 chrY 18752659 18752810 -32760774 + L1 LINE L1 4346 4494 -1652 281 26 26 0 chrY 18752810 18752848 -32760736 + (CA)n Simple_repeat Simple_repeat 2 40 0 4233 241 67 56 chrY 18752848 18753482 -32760102 + L1 LINE L1 4494 5169 -977 25 75 0 0 chrY 18753482 18753535 -32760049 + AT_rich Low_complexity Low_complexity 1 53 0 4449 306 84 29 chrY 18753597 18755197 -32758387 + L1PA13 LINE L1 148 1836 -4951 5077 209 26 16 chrY 18755202 18756218 -32757366 - THE1-int LTR MaLR -6 1574 549 1013 231 60 32 chrY 18756218 18756500 -32757084 - THE1C LTR MaLR -85 290 1 5823 279 89 32 chrY 18756500 18757104 -32756480 + L1PA13 LINE L1 2161 2729 -4068 4766 123 17 4 chrY 18757104 18757860 -32755724 + MER4E LTR ERV1 1 766 0 5823 279 89 32 chrY 18757860 18758052 -32755532 + L1PA13 LINE L1 2729 2909 -3888 315 0 0 0 chrY 18758052 18758087 -32755497 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5823 279 89 32 chrY 18758087 18760162 -32753422 + L1PA13 LINE L1 2909 5195 -1602 1834 131 0 50 chrY 18760184 18760539 -32753045 + AluY SINE Alu 1 340 0 20834 145 15 35 chrY 18760547 18764747 -32748837 - L1P3 LINE L1 -1884 4577 367 411 377 60 16 chrY 18764743 18765059 -32748525 - L1P3 LINE L1 -5021 854 525 * 651 290 30 5 chrY 18765091 18765291 -32748293 - L1P3 LINE L1 -5492 383 179 1725 261 30 100 chrY 18765363 18766004 -32747580 + L1M1 LINE L1 139 734 -6831 6181 193 34 8 chrY 18766004 18767068 -32746516 + L1PA8A LINE L1 1 1097 -4778 2009 138 3 0 chrY 18767068 18767357 -32746227 - AluSc SINE Alu -19 290 1 6181 193 34 8 chrY 18767357 18767404 -32746180 + L1PA8A LINE L1 1097 1141 -4734 4770 180 66 18 chrY 18767406 18772421 -32741163 + L1PA8A LINE L1 1187 6437 -9 9520 232 57 8 chrY 18772446 18774737 -32738847 + L1M1 LINE L1 721 3123 -4442 1279 211 57 41 chrY 18774745 18775163 -32738421 + L1M1 LINE L1 3239 3663 -3902 5416 145 2 6 chrY 18775163 18777191 -32736393 + L1PA7 LINE L1 4115 6153 -1 2625 193 40 22 chrY 18777192 18777824 -32735760 + L1MA2 LINE L1 5653 6295 -9 27 0 0 0 chrY 18777824 18777851 -32735733 + AT_rich Low_complexity Low_complexity 1 27 0 2072 277 24 39 chrY 18777852 18778740 -32734844 - L1 LINE L1 -1820 5745 4858 3760 200 30 34 chrY 18778740 18779603 -32733981 - L1PA14 LINE L1 0 6172 5307 948 300 21 7 chrY 18779603 18779890 -32733694 - AluJb SINE Alu -11 291 1 3760 200 30 34 chrY 18779890 18780148 -32733436 - L1PA14 LINE L1 -865 5307 3406 2763 257 38 11 chrY 18780147 18780996 -32732588 + L1P LINE L1 4213 5084 -1062 * 1210 282 86 3 chrY 18781007 18781671 -32731913 - L1 LINE L1 -2691 4874 4156 783 216 89 76 chrY 18781712 18782082 -32731502 - THE1C LTR MaLR 0 375 1 3455 225 68 20 chrY 18782088 18782929 -32730655 - THE1C-int LTR MaLR -7 1573 693 1714 234 67 26 chrY 18782949 18783518 -32730066 - L1 LINE L1 -4968 2597 2006 2961 332 73 61 chrY 18783563 18785661 -32727923 + L1PA12 LINE L1 8 2147 -5434 1674 166 35 44 chrY 18785661 18786028 -32727556 + THE1B LTR MaLR 1 364 0 2961 332 73 61 chrY 18786028 18786548 -32727036 + L1PA12 LINE L1 2147 2659 -4922 1439 202 47 18 chrY 18786555 18786896 -32726688 + L1MA2 LINE L1 5952 6302 -2 1560 243 28 27 chrY 18786911 18787338 -32726246 + MSTA-int LTR MaLR 337 1239 -412 4536 119 13 15 chrY 18787348 18788062 -32725522 - LTR30 LTR ERV1 -10 712 1 3356 77 22 4 chrY 18788062 18788516 -32725068 - HERV30 LTR ERV1 0 8257 7796 2769 72 3 0 chrY 18788518 18788877 -32724707 - HERV30 LTR ERV1 -4644 3613 3254 1904 122 43 7 chrY 18788879 18789158 -32724426 + AluY SINE Alu 7 295 -16 25754 77 11 6 chrY 18789158 18792478 -32721106 - HERV30 LTR ERV1 -4905 3352 17 1861 237 19 0 chrY 18792478 18792494 -32721090 + MSTA-int LTR MaLR 1217 1231 -420 4583 119 23 3 chrY 18792494 18793202 -32720382 - LTR30 LTR ERV1 0 722 1 1861 237 19 0 chrY 18793202 18793598 -32719986 + MSTA-int LTR MaLR 1231 1637 -14 1442 262 81 2 chrY 18793611 18794008 -32719576 + MSTA LTR MaLR 1 428 0 1630 213 131 8 chrY 18794673 18795054 -32718530 + MSTA LTR MaLR 1 428 0 419 293 83 18 chrY 18795090 18795471 -32718113 + LTR40c LTR ERVL 60 462 0 514 331 27 5 chrY 18795889 18796073 -32717511 + HERVL40 LTR ERVL 2867 3054 -2476 1126 142 79 0 chrY 18796303 18796493 -32717091 - LTR12 LTR ERV1 -133 581 377 300 243 29 19 chrY 18796494 18796597 -32716987 - LTR30 LTR ERV1 -80 642 539 5856 137 40 98 chrY 18796597 18797953 -32715631 - pTR5 LTR ERV1 -419 2019 743 663 358 73 42 chrY 18797956 18798652 -32714932 + HERVL40 LTR ERVL 3233 3950 -1580 1442 192 4 0 chrY 18799814 18800069 -32713515 + L1PA13 LINE L1 5680 5935 -228 960 218 38 9 chrY 18800081 18800349 -32713235 + MER52C-int LTR ERV1 1212 2379 -3884 1952 149 0 0 chrY 18800349 18800631 -32712953 + AluSx SINE Alu 1 282 -30 1698 174 31 0 chrY 18800648 18800936 -32712648 + AluSq SINE Alu 1 297 -16 2861 196 73 80 chrY 18800937 18801898 -32711686 + MER52C-int LTR ERV1 1277 2230 -2987 1666 50 5 0 chrY 18801902 18802122 -32711462 - L1PA4 LINE L1 -794 5352 5132 6810 32 0 4 chrY 18802122 18802927 -32710657 + L1PA4 LINE L1 5344 6155 0 1608 166 78 25 chrY 18802927 18803324 -32710260 + MER52C-int LTR ERV1 4314 4731 -2806 1122 193 36 36 chrY 18803314 18803620 -32709964 + MER52C-int LTR ERV1 2443 2748 -2469 * 402 264 14 7 chrY 18803647 18803787 -32709797 + MER52C-int LTR ERV1 4549 4689 -1257 366 148 16 0 chrY 18803793 18803854 -32709730 + MER52C-int LTR ERV1 5976 6037 -1168 * 992 203 25 15 chrY 18803844 18804041 -32709543 + MER52C-int LTR ERV1 6892 7090 -1 1286 260 7 16 chrY 18804068 18804376 -32709208 + MER52C LTR ERV1 12 316 -962 1640 204 0 0 chrY 18804388 18804718 -32708866 - AluSx SINE Alu 0 335 6 318 173 27 13 chrY 18804726 18804801 -32708783 + L1PA13 LINE L1 6082 6157 -6 399 21 0 0 chrY 18804949 18804997 -32708587 + (TG)n Simple_repeat Simple_repeat 1 48 0 1024 245 87 33 chrY 18805132 18805500 -32708084 + MSTD LTR MaLR 9 396 0 829 242 33 14 chrY 18806167 18806378 -32707206 + L1PA15 LINE L1 1640 1854 -4933 6998 226 55 24 chrY 18806379 18809276 -32704308 + L1PA15 LINE L1 3371 6382 -434 353 81 16 0 chrY 18809276 18809338 -32704246 + (CA)n Simple_repeat Simple_repeat 2 64 0 6998 226 55 24 chrY 18809338 18809784 -32703800 + L1PA15 LINE L1 6382 6813 -3 838 211 37 5 chrY 18811102 18811292 -32702292 - L1PB4 LINE L1 -180 5976 5781 648 212 17 0 chrY 18811293 18811411 -32702173 + L1PB4 LINE L1 6016 6135 -21 1830 146 0 7 chrY 18811420 18811744 -32701840 - AluSc SINE Alu 0 334 13 27 81 0 0 chrY 18811803 18811865 -32701719 + AT_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chrY 18811947 18811971 -32701613 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrY 18812155 18812183 -32701401 + AT_rich Low_complexity Low_complexity 1 28 0 2581 15 0 67 chrY 18812486 18812816 -32700768 + AluY SINE Alu 1 308 -3 3795 205 73 2 chrY 18812817 18813743 -32699841 - L1PA13 LINE L1 -19 6144 5141 826 120 8 0 chrY 18813743 18813876 -32699708 + L1PB1 LINE L1 6018 6151 0 1437 211 32 0 chrY 18814071 18814351 -32699233 + AluSx SINE Alu 1 289 -23 24 53 0 0 chrY 18814351 18814389 -32699195 + AT_rich Low_complexity Low_complexity 1 38 0 2575 224 50 34 chrY 18814390 18815182 -32698402 + L1MA7 LINE L1 5477 6281 -10 25 31 0 0 chrY 18815192 18815224 -32698360 + AT_rich Low_complexity Low_complexity 1 32 0 34 72 0 0 chrY 18815303 18815372 -32698212 + AT_rich Low_complexity Low_complexity 1 69 0 25 65 0 0 chrY 18815563 18815609 -32697975 + AT_rich Low_complexity Low_complexity 1 46 0 8028 262 73 20 chrY 18815616 18819421 -32694163 - L1MA4A LINE L1 -8 6997 2610 306 0 0 0 chrY 18819421 18819455 -32694129 + (TG)n Simple_repeat Simple_repeat 2 35 0 8028 262 73 20 chrY 18819455 18822213 -32691371 - L1MA4A LINE L1 -4395 2610 1 4564 272 53 8 chrY 18822211 18824002 -32689582 - L1 LINE L1 -2192 5373 3501 * 1639 241 43 16 chrY 18823993 18824432 -32689152 - L1PA15 LINE L1 0 6165 5715 * 1423 229 20 120 chrY 18824409 18824829 -32688755 - L1 LINE L1 -1117 5731 5270 * 1236 92 75 0 chrY 18824829 18825002 -32688582 + AluY SINE Alu 124 309 -2 1423 229 20 120 chrY 18825002 18825081 -32688503 - L1 LINE L1 -1578 5270 5185 7079 52 0 4 chrY 18825081 18826724 -32686860 + L1PA4 LINE L1 4512 6150 -5 1423 229 20 120 chrY 18826724 18827134 -32686450 - L1 LINE L1 -1663 5185 4831 * 2663 321 57 62 chrY 18827124 18827234 -32686350 - L1 LINE L1 -5295 1554 1445 1819 148 0 0 chrY 18827234 18827505 -32686079 - AluSq SINE Alu -4 309 39 2663 321 57 62 chrY 18827505 18828915 -32684669 - L1 LINE L1 -5404 1445 42 1349 251 63 4 chrY 18828955 18829414 -32684170 - L1MA9 LINE L1 -38 6274 5789 1252 218 11 0 chrY 18829414 18829689 -32683895 + HSMAR2 DNA Mariner 2 279 -1023 1516 224 26 3 chrY 18829694 18830042 -32683542 - HSMAR2 DNA Mariner -645 657 302 228 261 63 9 chrY 18830045 18830156 -32683428 + L1M4c LINE L1 2032 2148 -4236 6108 238 36 28 chrY 18830196 18831625 -32681959 + L1PA13 LINE L1 237 1677 -5110 1855 183 48 0 chrY 18831625 18831981 -32681603 - LTR25 LTR ERV1 0 794 422 1347 157 83 8 chrY 18831950 18832192 -32681392 - LTR25 LTR ERV1 -276 518 259 * 1228 261 60 18 chrY 18832221 18832670 -32680914 - L1M2 LINE L1 -4237 2870 2403 1498 222 4 98 chrY 18832673 18833123 -32680461 - L1M2 LINE L1 -5099 1931 1524 1879 193 102 7 chrY 18833123 18833570 -32680014 + LTR22 LTR ERVK 1 485 -7 5306 140 43 26 chrY 18833576 18833769 -32679815 + HERVK22 LTR ERVK 1 189 -6648 2126 132 0 6 chrY 18833769 18834080 -32679504 + AluY SINE Alu 1 309 -2 5306 140 43 26 chrY 18834080 18834776 -32678808 + HERVK22 LTR ERVK 189 905 -5932 * 14735 119 25 6 chrY 18834768 18835612 -32677972 + HERVK22 LTR ERVK 2325 3152 -3685 3904 104 48 96 chrY 18835612 18836334 -32677250 - LTR12 LTR ERV1 0 688 1 14735 119 25 6 chrY 18836334 18837697 -32675887 + HERVK22 LTR ERVK 3152 4573 -2264 4011 220 36 14 chrY 18838400 18840120 -32673464 - L1PB2 LINE L1 -41 6110 4355 759 154 53 18 chrY 18840130 18840299 -32673285 + L1MA1 LINE L1 5997 6171 -131 1412 193 0 0 chrY 18840342 18840585 -32672999 - AluSq SINE Alu -70 243 1 725 160 8 0 chrY 18840586 18840711 -32672873 + L1MA1 LINE L1 6157 6282 -20 192 178 43 49 chrY 18840884 18841047 -32672537 + A-rich Low_complexity Low_complexity 5 166 0 343 241 11 48 chrY 18841070 18841320 -32672264 + A-rich Low_complexity Low_complexity 1 240 0 291 234 5 73 chrY 18841339 18841531 -32672053 + A-rich Low_complexity Low_complexity 2 180 0 188 40 80 40 chrY 18841579 18841629 -32671955 + A-rich Low_complexity Low_complexity 3 54 0 279 111 10 61 chrY 18841684 18841783 -32671801 + (TAAAA)n Simple_repeat Simple_repeat 2 95 0 278 241 16 75 chrY 18841796 18841983 -32671601 + A-rich Low_complexity Low_complexity 2 177 0 204 236 34 34 chrY 18841998 18842087 -32671497 + A-rich Low_complexity Low_complexity 1 89 0 2005 278 88 58 chrY 18842097 18843686 -32669898 + L1MD3 LINE L1 5534 7169 -826 14552 180 7 11 chrY 18843687 18846558 -32667026 + L1PA8A LINE L1 1949 4806 -1340 5681 111 9 1 chrY 18846564 18847536 -32666048 + L1PA8A LINE L1 5143 6127 -4 2531 321 26 5 chrY 18847550 18848762 -32664822 - L1M1 LINE L1 -5292 2273 361 1382 222 49 15 chrY 18848762 18849086 -32664498 + MER21B LTR ERV1 63 397 -466 1939 198 34 86 chrY 18849126 18849716 -32663868 + LTR25 LTR ERV1 236 794 0 237 296 50 25 chrY 18849776 18849935 -32663649 - L1M2 LINE L1 -4242 2607 2445 40 21 0 0 chrY 18850021 18850068 -32663516 + AT_rich Low_complexity Low_complexity 1 47 0 302 216 40 14 chrY 18850243 18850317 -32663267 - MER51D LTR ERV1 -85 572 497 257 333 10 0 chrY 18852553 18852649 -32660935 + MIR SINE MIR 106 202 -60 2810 196 17 31 chrY 18852897 18853539 -32660045 - MER51A LTR ERV1 -1 633 1 1339 225 22 4 chrY 18853540 18853811 -32659773 - MER51A-int LTR ERV1 0 7816 7541 341 317 35 7 chrY 18853976 18854118 -32659466 - HERVFH21 LTR ERV1 -446 8180 8035 262 300 10 10 chrY 18854316 18854416 -32659168 - HERVFH21 LTR ERV1 -1683 4846 4747 * 752 180 82 5 chrY 18854411 18854605 -32658979 - HERVFH21 LTR ERV1 -2416 3530 3322 1740 183 24 17 chrY 18854619 18855034 -32658550 - HERVFH21 LTR ERV1 -6081 2039 1622 1010 301 10 24 chrY 18856075 18856367 -32657217 + AluJo SINE Alu 1 288 -14 258 270 0 14 chrY 18856907 18856981 -32656603 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 400 250 0 0 chrY 18857878 18857966 -32655618 + FLAM_C SINE Alu 22 109 -24 6497 72 2 2 chrY 18857980 18858844 -32654740 - L1PA7 LINE L1 0 6154 5291 2924 166 48 62 chrY 18858858 18859101 -32654483 - L1P3 LINE L1 -5838 623 378 219 36 0 0 chrY 18859101 18859129 -32654455 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2924 166 48 62 chrY 18859129 18859517 -32654067 - L1P3 LINE L1 -6083 378 1 1188 41 0 0 chrY 18859517 18859663 -32653921 + (TTTTC)n Simple_repeat Simple_repeat 4 149 0 428 236 38 0 chrY 18859678 18859784 -32653800 + L1PA16 LINE L1 6019 6128 -38 600 160 0 0 chrY 18859784 18859878 -32653706 - AluSc SINE Alu -78 231 138 42260 54 6 1 chrY 18861558 18867681 -32645903 - L1PA4 LINE L1 -3 6152 1 961 288 96 9 chrY 18868064 18868541 -32645043 - L1M4 LINE L1 -368 5816 5297 1057 315 20 6 chrY 18868701 18869057 -32644527 + MER89 LTR ERV1 197 557 -2 1317 224 4 0 chrY 18869230 18869475 -32644109 - AluSx SINE Alu -38 274 29 391 207 0 0 chrY 18870208 18870290 -32643294 + L1MB4 LINE L1 6064 6145 -35 25 31 0 0 chrY 18870358 18870390 -32643194 + AT_rich Low_complexity Low_complexity 1 32 0 1858 264 52 9 chrY 18870429 18871106 -32642478 + L1MB3 LINE L1 5478 6183 0 23 101 0 0 chrY 18871322 18871401 -32642183 + AT_rich Low_complexity Low_complexity 1 79 0 449 304 51 0 chrY 18872257 18872415 -32641169 + MER5A DNA MER1_type 6 171 -18 23 33 0 0 chrY 18872534 18872564 -32641020 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chrY 18873388 18873426 -32640158 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chrY 18873666 18873702 -32639882 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chrY 18874314 18874336 -32639248 + AT_rich Low_complexity Low_complexity 1 22 0 381 232 0 0 chrY 18875366 18875461 -32638123 + (TATATG)n Simple_repeat Simple_repeat 5 99 0 1585 271 97 35 chrY 18875461 18875549 -32638035 + L1MA5 LINE L1 4226 4307 -1839 1056 237 10 65 chrY 18875549 18875857 -32637727 - AluJo SINE Alu -11 291 1 1585 271 97 35 chrY 18875857 18876037 -32637547 + L1MA5 LINE L1 4307 4474 -1672 2191 102 0 49 chrY 18876037 18876361 -32637223 + AluY SINE Alu 1 308 -3 1585 271 97 35 chrY 18876361 18876712 -32636872 + L1MA5 LINE L1 4474 4802 -1344 2113 105 13 3 chrY 18876712 18877017 -32636567 + AluSg SINE Alu 1 308 -2 1585 271 97 35 chrY 18877017 18877467 -32636117 + L1MA5 LINE L1 4802 5363 -783 794 264 189 3 chrY 18877473 18877780 -32635804 + L1MA5 LINE L1 5518 5881 -419 272 200 14 0 chrY 18877793 18877863 -32635721 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 186 288 136 30 chrY 18878003 18878135 -32635449 - MIR SINE MIR -26 236 91 1988 133 27 3 chrY 18878322 18878623 -32634961 - AluSq SINE Alu -1 312 5 1655 145 19 74 chrY 18878885 18879209 -32634375 + AluSg SINE Alu 1 306 -4 1870 76 0 24 chrY 18879530 18879779 -32633805 + AluY SINE Alu 69 311 0 3207 113 330 0 chrY 18879974 18880595 -32632989 - LTR12 LTR ERV1 0 826 1 5656 111 4 0 chrY 18880598 18881401 -32632183 - HERV9 LTR ERV1 -2 8397 7592 * 21437 132 13 11 chrY 18881398 18884722 -32628862 - HERV9 LTR ERV1 -5069 3330 1 4251 115 138 49 chrY 18884722 18885480 -32628104 - LTR12 LTR ERV1 0 826 1 187 353 90 6 chrY 18886187 18886231 -32627353 + MER5B DNA MER1_type 9 48 -130 192 40 0 0 chrY 18886231 18886256 -32627328 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 187 353 90 6 chrY 18886256 18886367 -32627217 + MER5B DNA MER1_type 48 177 -1 1625 196 51 20 chrY 18887287 18887640 -32625944 + THE1B LTR MaLR 1 364 0 9302 164 10 8 chrY 18887640 18889216 -32624368 + THE1B-int LTR MaLR 1 1580 0 1806 160 60 20 chrY 18889216 18889566 -32624018 + THE1B LTR MaLR 1 364 0 759 161 72 28 chrY 18891017 18891197 -32622387 - LTR56 LTR ERV1 -1 444 257 244 233 41 0 chrY 18891197 18891270 -32622314 + L1MA2 LINE L1 5985 6060 -244 676 309 57 55 chrY 18891443 18891883 -32621701 + L1MCa LINE L1 17 457 -5969 460 297 36 14 chrY 18892637 18892856 -32620728 - L1MC/D LINE L1 -678 5666 5443 301 328 45 0 chrY 18893268 18893402 -32620182 + HERVL74 LTR ERVL 1928 2067 -3618 7280 37 10 0 chrY 18893530 18894936 -32618648 + L1PA3 LINE L1 4756 6172 0 1450 185 53 63 chrY 18895093 18895472 -32618112 + THE1C LTR MaLR 1 375 0 22 35 0 0 chrY 18896422 18896451 -32617133 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrY 18896547 18896582 -32617002 + AT_rich Low_complexity Low_complexity 1 35 0 2302 78 0 31 chrY 18897152 18897473 -32616111 + AluY SINE Alu 1 311 0 225 0 0 0 chrY 18897642 18897667 -32615917 + (T)n Simple_repeat Simple_repeat 1 25 0 281 256 3 14 chrY 18899149 18899230 -32614354 - L1MA6 LINE L1 -48 6251 6162 271 226 129 0 chrY 18899387 18899449 -32614135 - MER61E LTR ERV1 -4 565 496 281 175 25 38 chrY 18899516 18899596 -32613988 - LTR25 LTR ERV1 -501 293 215 * 322 176 11 143 chrY 18899576 18899667 -32613917 - MER61E LTR ERV1 -458 111 33 1743 221 38 21 chrY 18899680 18900101 -32613483 - LTR51 LTR ERV1 -212 459 32 387 235 96 17 chrY 18900354 18900469 -32613115 + L1MCa LINE L1 439 562 -5762 423 0 0 0 chrY 18900469 18900516 -32613068 + (CA)n Simple_repeat Simple_repeat 2 48 0 3718 229 81 51 chrY 18900518 18900740 -32612844 + L1PA15 LINE L1 3697 3911 -2254 1936 171 7 0 chrY 18900740 18901038 -32612546 + AluSp SINE Alu 5 304 -9 3718 229 81 51 chrY 18901038 18903196 -32610388 + L1PA15 LINE L1 3911 6161 -4 1655 195 7 3 chrY 18903207 18903499 -32610085 + AluSc SINE Alu 1 293 -16 231 61 0 0 chrY 18903503 18903536 -32610048 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 229 285 85 31 chrY 18903636 18903766 -32609818 + L1MC4 LINE L1 7903 8039 -3 42330 57 6 1 chrY 18904615 18910749 -32602835 + L1PA3 LINE L1 1 6155 0 1037 240 19 50 chrY 18910919 18910977 -32602607 + L1PA10 LINE L1 2489 2547 -3599 1904 141 3 10 chrY 18910977 18911274 -32602310 + AluY SINE Alu 1 295 -16 1037 240 19 50 chrY 18911274 18911536 -32602048 + L1PA10 LINE L1 2547 2799 -3347 10889 172 59 0 chrY 18911538 18914566 -32599018 + L1PA10 LINE L1 3065 6150 -18 285 51 0 0 chrY 18914700 18914739 -32598845 + (TTA)n Simple_repeat Simple_repeat 1 39 0 7602 161 24 7 chrY 18915358 18916641 -32596943 - L1P LINE L1 -4831 1315 11 4928 168 9 26 chrY 18916652 18917528 -32596056 - L1P3 LINE L1 -5591 870 10 25 0 0 0 chrY 18918939 18918964 -32594620 + AT_rich Low_complexity Low_complexity 1 25 0 1324 253 3 0 chrY 18918968 18919265 -32594319 - AluJb SINE Alu -9 303 6 27 96 0 0 chrY 18919334 18919417 -32594167 + AT_rich Low_complexity Low_complexity 1 83 0 220 250 0 54 chrY 18919486 18919598 -32593986 + T-rich Low_complexity Low_complexity 4 109 0 1938 113 3 44 chrY 18920532 18920918 -32592666 + AluY SINE Alu 1 374 0 670 211 96 32 chrY 18921205 18921456 -32592128 + L1MA7 LINE L1 6020 6286 -5 10183 104 18 4 chrY 18921598 18924107 -32589477 + L1P LINE L1 1453 4890 -1256 25 31 0 0 chrY 18925679 18925711 -32587873 + AT_rich Low_complexity Low_complexity 1 32 0 5698 98 5 12 chrY 18926202 18927011 -32586573 - L1PA7 LINE L1 0 6154 5352 676 109 0 0 chrY 18927030 18927122 -32586462 - AluY SINE Alu -217 94 3 1235 121 11 0 chrY 18927124 18927314 -32586270 - L1PA7 LINE L1 -778 5368 5177 2233 119 0 10 chrY 18927710 18928022 -32585562 - AluY SINE Alu 0 311 3 1435 136 41 4 chrY 18928106 18928349 -32585235 - L1PA7 LINE L1 -2 6152 5901 1692 190 24 66 chrY 18928349 18930051 -32583533 - LTR12 LTR ERV1 0 714 366 1559 181 32 64 chrY 18930079 18930421 -32583163 - LTR12 LTR ERV1 -1 713 383 1680 187 26 65 chrY 18930450 18934044 -32579540 - LTR12 LTR ERV1 0 714 72 1715 187 28 64 chrY 18934071 18935930 -32577654 - LTR12 LTR ERV1 0 714 363 1511 199 24 69 chrY 18935943 18936322 -32577262 - LTR12 LTR ERV1 0 714 388 1698 183 27 67 chrY 18936322 18937169 -32576415 - LTR12 LTR ERV1 0 714 381 1662 198 27 60 chrY 18937196 18939055 -32574529 - LTR12 LTR ERV1 0 714 363 1496 177 39 26 chrY 18939167 18939553 -32574031 + LTR12 LTR ERV1 385 714 0 * 1642 188 23 65 chrY 18939553 18940182 -32573402 + LTR12 LTR ERV1 388 714 0 1545 198 25 57 chrY 18940182 18940557 -32573027 + LTR12 LTR ERV1 144 714 0 1656 198 26 66 chrY 18940571 18941486 -32572098 + LTR12 LTR ERV1 366 714 0 1501 192 24 75 chrY 18941586 18942234 -32571350 - LTR12 LTR ERV1 0 714 381 1673 191 24 66 chrY 18942261 18943609 -32569975 - LTR12 LTR ERV1 0 714 366 1445 198 31 72 chrY 18943640 18944574 -32569010 - LTR12 LTR ERV1 0 714 381 1573 195 24 73 chrY 18944693 18946095 -32567489 - LTR12 LTR ERV1 0 714 380 1766 185 25 67 chrY 18946121 18947222 -32566362 - LTR12 LTR ERV1 0 714 366 1520 199 24 65 chrY 18947249 18947722 -32565862 - LTR12 LTR ERV1 0 714 381 1590 198 28 62 chrY 18947749 18948376 -32565208 - LTR12 LTR ERV1 0 714 270 1724 192 27 67 chrY 18948376 18949600 -32563984 - LTR12 LTR ERV1 0 714 381 1544 204 23 63 chrY 18949628 18949976 -32563608 - LTR12 LTR ERV1 0 714 381 1708 185 23 63 chrY 18950003 18950476 -32563108 - LTR12 LTR ERV1 0 714 381 1741 187 23 65 chrY 18950503 18951228 -32562356 - LTR12 LTR ERV1 0 714 381 1560 209 23 62 chrY 18951256 18951610 -32561974 - LTR12 LTR ERV1 0 714 375 1827 184 23 66 chrY 18951631 18953734 -32559850 - LTR12 LTR ERV1 0 714 381 1682 193 24 63 chrY 18953763 18954887 -32558697 - LTR12 LTR ERV1 0 2429 388 1663 187 22 71 chrY 18954887 18955619 -32557965 - LTR12 LTR ERV1 0 714 381 1630 199 23 63 chrY 18955646 18956367 -32557217 - LTR12 LTR ERV1 0 714 381 1741 177 23 68 chrY 18956396 18957250 -32556334 - LTR12 LTR ERV1 0 714 381 1666 194 25 62 chrY 18957278 18958748 -32554836 - LTR12 LTR ERV1 0 714 380 1693 184 24 64 chrY 18958775 18959875 -32553709 - LTR12 LTR ERV1 0 714 381 1670 189 24 63 chrY 18959902 18960499 -32553085 - LTR12 LTR ERV1 0 714 381 1600 197 22 64 chrY 18960526 18960889 -32552695 - LTR12 LTR ERV1 0 714 292 1647 190 24 65 chrY 18961066 18961693 -32551891 - LTR12 LTR ERV1 -2 712 375 1724 180 23 65 chrY 18961723 18962325 -32551259 - LTR12 LTR ERV1 0 714 381 1587 187 26 66 chrY 18962352 18962700 -32550884 - LTR12 LTR ERV1 0 714 381 1726 180 23 63 chrY 18962727 18963325 -32550259 - LTR12 LTR ERV1 0 714 381 1730 187 27 57 chrY 18963352 18963852 -32549732 - LTR12 LTR ERV1 0 714 270 1683 185 26 62 chrY 18963852 18964853 -32548731 - LTR12 LTR ERV1 0 2429 403 1682 200 24 62 chrY 18964853 18965718 -32547866 - LTR12 LTR ERV1 0 714 362 1781 183 25 61 chrY 18965728 18966853 -32546731 - LTR12 LTR ERV1 0 714 270 1709 176 24 66 chrY 18966853 18967577 -32546007 - LTR12 LTR ERV1 0 714 381 1750 193 24 63 chrY 18967604 18968702 -32544882 - LTR12 LTR ERV1 0 714 362 1788 182 26 60 chrY 18968729 18969729 -32543855 - LTR12 LTR ERV1 0 2428 384 1709 193 25 62 chrY 18969729 18971093 -32542491 - LTR12 LTR ERV1 0 714 362 1693 189 24 62 chrY 18971103 18971968 -32541616 - LTR12 LTR ERV1 0 714 362 1622 195 23 63 chrY 18971978 18972326 -32541258 - LTR12 LTR ERV1 0 714 381 1692 184 23 68 chrY 18972353 18973205 -32540379 - LTR12 LTR ERV1 0 714 381 1591 193 23 63 chrY 18973234 18973829 -32539755 - LTR12 LTR ERV1 0 714 381 1648 183 25 72 chrY 18973857 18975593 -32537991 - LTR12 LTR ERV1 0 714 381 1632 197 24 67 chrY 18975620 18977715 -32535869 - LTR12 LTR ERV1 0 714 377 1665 192 25 65 chrY 18977746 18980843 -32532741 - LTR12 LTR ERV1 0 714 363 1727 196 25 64 chrY 18980874 18984370 -32529214 - LTR12 LTR ERV1 0 714 380 1694 186 23 66 chrY 18984397 18984874 -32528710 - LTR12 LTR ERV1 0 714 381 1464 203 27 64 chrY 18984901 18985276 -32528308 - LTR12 LTR ERV1 0 714 270 1489 204 23 63 chrY 18985276 18985624 -32527960 - LTR12 LTR ERV1 0 714 381 1718 190 24 64 chrY 18985650 18986644 -32526940 - LTR12 LTR ERV1 0 714 362 1625 190 26 63 chrY 18986654 18987001 -32526583 - LTR12 LTR ERV1 0 714 381 1688 194 24 69 chrY 18987028 18987880 -32525704 - LTR12 LTR ERV1 0 714 380 1557 194 32 67 chrY 18987907 18988252 -32525332 - LTR12 LTR ERV1 0 714 382 1738 179 28 62 chrY 18988280 18989107 -32524477 - LTR12 LTR ERV1 0 714 197 1751 194 26 66 chrY 18989393 18991365 -32522219 - LTR12 LTR ERV1 0 714 366 1701 187 26 70 chrY 18991379 18992481 -32521103 - LTR12 LTR ERV1 0 714 381 1630 199 25 63 chrY 18992510 18993105 -32520479 - LTR12 LTR ERV1 0 714 381 1599 202 23 68 chrY 18993132 18994736 -32518848 - LTR12 LTR ERV1 0 714 380 1598 203 23 62 chrY 18994764 18995235 -32518349 - LTR12 LTR ERV1 0 714 381 1627 178 23 67 chrY 18995266 18995739 -32517845 - LTR12 LTR ERV1 0 714 381 1708 190 25 65 chrY 18995766 18997997 -32515587 - LTR12 LTR ERV1 0 714 129 1648 191 24 67 chrY 18998024 18999001 -32514583 - LTR12 LTR ERV1 0 714 363 1599 194 29 60 chrY 18999028 18999402 -32514182 - LTR12 LTR ERV1 0 2429 403 1576 203 25 63 chrY 18999402 19000379 -32513205 - LTR12 LTR ERV1 0 714 380 1572 188 24 67 chrY 19000406 19001257 -32512327 - LTR12 LTR ERV1 0 714 381 1580 194 26 71 chrY 19001284 19003262 -32510322 - LTR12 LTR ERV1 0 714 381 1746 189 25 65 chrY 19003293 19004639 -32508945 - LTR12 LTR ERV1 0 714 381 1672 194 25 63 chrY 19004668 19006518 -32507066 - LTR12 LTR ERV1 0 714 137 1688 197 25 67 chrY 19006546 19008780 -32504804 - LTR12 LTR ERV1 0 714 375 1665 197 26 69 chrY 19008807 19011915 -32501669 - LTR12 LTR ERV1 0 714 377 1520 198 24 69 chrY 19011942 19012321 -32501263 - LTR12 LTR ERV1 0 714 388 1623 198 23 63 chrY 19012321 19012919 -32500665 - LTR12 LTR ERV1 0 714 381 1663 202 26 64 chrY 19012946 19014797 -32498787 - LTR12 LTR ERV1 0 714 363 1580 190 23 74 chrY 19014824 19015176 -32498408 - LTR12 LTR ERV1 0 714 381 1615 198 33 61 chrY 19015203 19015566 -32498018 - LTR12 LTR ERV1 0 714 362 1693 193 27 68 chrY 19015578 19019939 -32493645 - LTR12 LTR ERV1 0 714 362 1660 184 23 64 chrY 19019966 19020818 -32492766 - LTR12 LTR ERV1 0 714 381 1688 192 23 63 chrY 19020845 19021443 -32492141 - LTR12 LTR ERV1 0 714 381 1730 186 23 67 chrY 19021470 19022071 -32491513 - LTR12 LTR ERV1 0 714 372 1696 191 25 70 chrY 19022098 19024458 -32489126 - LTR12 LTR ERV1 0 714 363 1692 196 25 61 chrY 19024485 19026405 -32487179 - LTR12 LTR ERV1 0 714 366 1708 189 26 65 chrY 19076416 19078122 -32435462 - LTR12 LTR ERV1 0 714 72 1657 199 24 63 chrY 19078153 19080122 -32433462 - LTR12 LTR ERV1 0 714 381 1674 191 26 64 chrY 19080149 19081494 -32432090 - LTR12 LTR ERV1 0 714 381 1619 195 27 63 chrY 19081521 19082616 -32430968 - LTR12 LTR ERV1 0 714 381 1725 189 25 63 chrY 19082643 19084859 -32428725 - LTR12 LTR ERV1 0 714 362 1653 190 23 63 chrY 19084886 19085734 -32427850 - LTR12 LTR ERV1 0 714 381 1551 192 23 63 chrY 19085761 19086609 -32426975 - LTR12 LTR ERV1 0 714 381 1585 199 23 64 chrY 19086636 19087610 -32425974 - LTR12 LTR ERV1 0 714 381 1583 189 25 66 chrY 19087637 19088108 -32425476 - LTR12 LTR ERV1 0 714 381 1547 187 23 63 chrY 19088137 19088485 -32425099 - LTR12 LTR ERV1 0 714 381 1551 194 23 63 chrY 19088512 19089610 -32423974 - LTR12 LTR ERV1 0 714 381 1559 193 23 63 chrY 19089637 19090110 -32423474 - LTR12 LTR ERV1 0 714 381 1599 201 23 64 chrY 19090137 19091484 -32422100 - LTR12 LTR ERV1 0 714 381 1631 189 23 64 chrY 19091513 19093236 -32420348 - LTR12 LTR ERV1 0 714 381 1548 197 25 63 chrY 19093263 19093860 -32419724 - LTR12 LTR ERV1 0 714 381 1541 202 23 63 chrY 19093887 19094607 -32418977 - LTR12 LTR ERV1 0 714 381 1589 190 25 64 chrY 19094637 19096234 -32417350 - LTR12 LTR ERV1 0 714 381 1586 194 25 66 chrY 19096261 19097606 -32415978 - LTR12 LTR ERV1 0 714 72 1660 190 26 64 chrY 19097633 19099478 -32414106 - LTR12 LTR ERV1 0 714 362 1606 188 30 62 chrY 19099505 19100097 -32413487 - LTR12 LTR ERV1 0 714 383 1654 190 28 61 chrY 19100126 19101001 -32412583 - LTR12 LTR ERV1 0 714 268 1696 191 27 63 chrY 19101001 19103833 -32409751 - LTR12 LTR ERV1 0 714 381 1660 196 24 64 chrY 19103860 19104831 -32408753 - LTR12 LTR ERV1 0 714 72 1455 195 32 72 chrY 19104858 19105206 -32408378 - LTR12 LTR ERV1 0 714 381 1635 190 27 63 chrY 19105233 19106451 -32407133 - LTR12 LTR ERV1 0 714 362 1542 205 25 63 chrY 19106478 19106950 -32406634 - LTR12 LTR ERV1 0 714 381 1593 206 25 62 chrY 19106977 19107447 -32406137 - LTR12 LTR ERV1 0 714 381 1693 192 27 64 chrY 19107474 19108567 -32405017 - LTR12 LTR ERV1 0 714 381 1705 178 23 64 chrY 19108596 19109065 -32404519 - LTR12 LTR ERV1 0 714 381 1596 202 25 62 chrY 19109094 19109816 -32403768 - LTR12 LTR ERV1 0 714 380 1531 203 26 64 chrY 19109842 19110187 -32403397 - LTR12 LTR ERV1 0 714 383 1723 190 24 63 chrY 19110216 19110937 -32402647 - LTR12 LTR ERV1 0 714 381 1561 201 30 65 chrY 19110964 19111804 -32401780 - LTR12 LTR ERV1 0 714 380 1723 187 27 62 chrY 19111835 19112698 -32400886 - LTR12 LTR ERV1 0 714 362 1593 197 27 63 chrY 19112708 19113803 -32399781 - LTR12 LTR ERV1 0 714 381 1584 206 23 64 chrY 19113830 19114676 -32398908 - LTR12 LTR ERV1 0 714 381 1694 192 28 64 chrY 19114705 19116300 -32397284 - LTR12 LTR ERV1 0 714 381 1643 190 25 65 chrY 19116327 19119297 -32394287 - LTR12 LTR ERV1 0 714 363 1627 201 23 63 chrY 19119326 19121923 -32391661 - LTR12 LTR ERV1 0 714 381 1736 190 24 63 chrY 19121950 19125792 -32387792 - LTR12 LTR ERV1 0 714 381 1626 195 23 64 chrY 19125821 19129666 -32383918 - LTR12 LTR ERV1 0 714 375 1528 189 24 66 chrY 19129693 19131041 -32382543 - LTR12 LTR ERV1 0 714 381 1485 194 23 63 chrY 19131068 19132664 -32380920 - LTR12 LTR ERV1 0 714 381 1443 194 23 63 chrY 19132693 19133416 -32380168 - LTR12 LTR ERV1 0 714 381 1443 193 23 64 chrY 19133443 19134041 -32379543 - LTR12 LTR ERV1 0 714 381 1449 196 23 64 chrY 19134068 19135040 -32378544 - LTR12 LTR ERV1 0 714 381 1388 195 23 63 chrY 19135069 19135417 -32378167 - LTR12 LTR ERV1 0 714 381 1450 189 24 64 chrY 19135444 19135915 -32377669 - LTR12 LTR ERV1 0 714 381 1487 188 26 66 chrY 19135944 19137167 -32376417 - LTR12 LTR ERV1 0 714 381 1472 199 24 63 chrY 19137194 19139929 -32373655 - LTR12 LTR ERV1 0 714 366 1357 211 23 64 chrY 19139943 19140289 -32373295 - LTR12 LTR ERV1 0 714 383 1362 203 23 63 chrY 19140318 19141416 -32372168 - LTR12 LTR ERV1 0 714 381 1453 197 23 63 chrY 19141443 19142791 -32370793 - LTR12 LTR ERV1 0 714 381 1429 201 23 63 chrY 19142818 19143291 -32370293 - LTR12 LTR ERV1 0 714 381 1407 201 23 63 chrY 19143318 19143916 -32369668 - LTR12 LTR ERV1 0 714 381 1485 196 23 63 chrY 19143943 19146790 -32366794 - LTR12 LTR ERV1 0 714 381 1448 192 23 64 chrY 19146817 19147665 -32365919 - LTR12 LTR ERV1 0 714 381 1392 195 23 63 chrY 19147692 19148040 -32365544 - LTR12 LTR ERV1 0 714 381 1437 193 23 63 chrY 19148067 19148540 -32365044 - LTR12 LTR ERV1 0 714 381 1506 182 23 63 chrY 19148567 19149165 -32364419 - LTR12 LTR ERV1 0 714 381 1443 193 23 64 chrY 19149192 19149788 -32363796 - LTR12 LTR ERV1 0 714 383 1453 195 23 63 chrY 19149817 19150165 -32363419 - LTR12 LTR ERV1 0 714 381 1507 183 23 64 chrY 19150192 19150915 -32362669 - LTR12 LTR ERV1 0 714 381 1486 190 23 64 chrY 19150942 19152275 -32361309 - LTR12 LTR ERV1 0 714 381 1649 134 8 3 chrY 19152311 19152747 -32360837 - L1PA8A LINE L1 -592 5539 5100 657 198 14 66 chrY 19152736 19152948 -32360636 - L1PA12 LINE L1 -255 5913 5713 * 2167 314 39 28 chrY 19152972 19154573 -32359011 + L1P LINE L1 1884 3502 -2644 28 48 0 0 chrY 19154577 19154619 -32358965 + AT_rich Low_complexity Low_complexity 1 42 0 219 80 80 50 chrY 19154625 19154725 -32358859 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 1235 181 4 18 chrY 19154840 19155067 -32358517 - AluSg/x SINE Alu -5 307 84 2218 253 55 56 chrY 19155070 19155623 -32357961 + L1ME LINE L1 3627 4179 -1967 180 0 0 0 chrY 19155623 19155643 -32357941 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2218 253 55 56 chrY 19155643 19156331 -32357253 + L1ME LINE L1 4179 4866 -1280 5942 85 32 36 chrY 19156334 19157002 -32356582 + L1PA8 LINE L1 4700 5369 -803 1951 151 3 3 chrY 19157002 19157301 -32356283 + AluSg SINE Alu 1 299 -11 5942 85 32 36 chrY 19157301 19158107 -32355477 + L1PA8 LINE L1 5369 6168 -4 392 262 3 1 chrY 19158117 19158255 -32355329 + L1ME LINE L1 5476 5611 -555 343 246 0 45 chrY 19158263 19158373 -32355211 + L1MC4 LINE L1 6604 6708 -1334 305 197 13 0 chrY 19158374 19158450 -32355134 + (TA)n Simple_repeat Simple_repeat 1 77 0 981 259 41 0 chrY 19158468 19158762 -32354822 + L1PA16 LINE L1 5860 6165 -1 303 167 0 0 chrY 19159767 19159821 -32353763 + AluSq/x SINE Alu 66 119 -184 2347 90 0 3 chrY 19159846 19160158 -32353426 + AluY SINE Alu 1 311 0 2366 208 63 12 chrY 19160314 19160915 -32352669 - L1MA3 LINE L1 -226 7498 6867 4238 177 54 77 chrY 19160916 19162001 -32351583 - L1MA3 LINE L1 -4264 3301 2250 1876 166 0 3 chrY 19162001 19162296 -32351288 + AluSc SINE Alu 1 294 -15 4238 177 54 77 chrY 19162296 19162557 -32351027 - L1MA3 LINE L1 -5315 2250 1985 274 194 15 0 chrY 19162636 19162703 -32350881 + (CA)n Simple_repeat Simple_repeat 1 68 0 413 224 99 15 chrY 19163126 19163327 -32350257 - L1MC5 LINE L1 -444 7517 7300 763 271 106 13 chrY 19163411 19163961 -32349623 + L1ME3 LINE L1 2649 3249 -2897 838 276 71 49 chrY 19164347 19164800 -32348784 - MLT1C LTR MaLR -4 463 1 726 285 185 21 chrY 19164802 19165360 -32348224 + L1ME3 LINE L1 4036 4684 -1462 311 296 101 48 chrY 19165681 19165870 -32347714 + L1ME3 LINE L1 5052 5250 -896 385 224 63 88 chrY 19165871 19166076 -32347508 + L1ME3 LINE L1 5298 5497 -745 458 294 70 49 chrY 19166095 19166400 -32347184 + L1ME3 LINE L1 5665 5985 -177 1979 135 3 14 chrY 19166400 19166696 -32346888 + AluSc SINE Alu 12 304 -5 458 294 70 49 chrY 19166696 19166876 -32346708 + L1ME3 LINE L1 5985 6160 -2 22 0 0 0 chrY 19166878 19166900 -32346684 + AT_rich Low_complexity Low_complexity 1 22 0 448 254 0 0 chrY 19166952 19167070 -32346514 + L1 LINE L1 3705 3822 -2324 620 266 0 37 chrY 19167084 19167272 -32346312 + AluJb SINE Alu 132 312 0 353 136 7 54 chrY 19167355 19167502 -32346082 + (TAAAA)n Simple_repeat Simple_repeat 5 144 0 297 208 8 56 chrY 19167504 19167629 -32345955 + A-rich Low_complexity Low_complexity 1 119 0 210 244 0 0 chrY 19167655 19167737 -32345847 + (AAATG)n Simple_repeat Simple_repeat 4 85 0 207 213 16 33 chrY 19167744 19167805 -32345779 + A-rich Low_complexity Low_complexity 5 64 0 1739 211 47 17 chrY 19167807 19168321 -32345263 + L1PA16 LINE L1 5602 6158 -5 1711 178 7 0 chrY 19168699 19169003 -32344581 + AluSx SINE Alu 1 306 -6 192 269 0 0 chrY 19169028 19169132 -32344452 + A-rich Low_complexity Low_complexity 2 105 0 211 266 38 0 chrY 19169139 19169218 -32344366 + (AAATG)n Simple_repeat Simple_repeat 4 85 0 40086 40 22 1 chrY 19169218 19175244 -32338340 + L1PA2 LINE L1 2 6154 -1 204 273 40 20 chrY 19175253 19175403 -32338181 + A-rich Low_complexity Low_complexity 5 157 0 318 327 0 88 chrY 19175434 19175593 -32337991 + AluJb SINE Alu 158 302 0 313 296 100 55 chrY 19175634 19175816 -32337768 + L1 LINE L1 2896 3099 -3047 323 96 19 0 chrY 19175816 19175868 -32337716 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 313 296 100 55 chrY 19175868 19175996 -32337588 + L1 LINE L1 3099 3220 -2926 308 289 89 69 chrY 19176069 19176352 -32337232 + L1 LINE L1 2818 3113 -3033 1871 147 46 0 chrY 19176352 19176637 -32336947 + AluSg SINE Alu 5 302 -8 308 289 89 69 chrY 19176637 19176758 -32336826 + L1 LINE L1 3113 3230 -2916 204 135 0 0 chrY 19176822 19176859 -32336725 + (TAAAAA)n Simple_repeat Simple_repeat 3 39 0 186 178 24 47 chrY 19176934 19177103 -32336481 + A-rich Low_complexity Low_complexity 2 166 0 21 0 0 0 chrY 19177159 19177180 -32336404 + AT_rich Low_complexity Low_complexity 1 21 0 189 178 0 0 chrY 19177247 19177292 -32336292 + A-rich Low_complexity Low_complexity 5 49 0 24 32 0 0 chrY 19177325 19177356 -32336228 + AT_rich Low_complexity Low_complexity 1 31 0 313 230 25 43 chrY 19177365 19177526 -32336058 + A-rich Low_complexity Low_complexity 2 159 0 25 51 0 0 chrY 19177528 19177567 -32336017 + AT_rich Low_complexity Low_complexity 1 39 0 215 279 39 19 chrY 19177645 19177799 -32335785 + A-rich Low_complexity Low_complexity 4 160 0 216 228 0 0 chrY 19177837 19177894 -32335690 + A-rich Low_complexity Low_complexity 3 59 0 214 248 43 34 chrY 19177932 19178049 -32335535 + (AAATG)n Simple_repeat Simple_repeat 3 120 0 237 120 0 60 chrY 19178146 19178196 -32335388 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 488 316 70 24 chrY 19179057 19179430 -32334154 - MLT1B LTR MaLR 0 390 1 245 256 58 16 chrY 19179556 19179677 -32333907 - MER67C LTR ERV1 -8 702 577 1705 173 20 10 chrY 19179736 19179857 -32333727 + AluY SINE Alu 1 119 -192 561 99 0 0 chrY 19179857 19179938 -32333646 + (TA)n Simple_repeat Simple_repeat 2 82 0 1705 173 20 10 chrY 19179938 19180116 -32333468 + AluY SINE Alu 119 303 -8 918 195 44 49 chrY 19180220 19180425 -32333159 + pTR5 LTR ERV1 738 941 -1497 40802 58 14 2 chrY 19180428 19181651 -32331933 - L1P1 LINE L1 -449 5706 4500 8817 47 3 0 chrY 19181651 19183527 -32330057 - L1PA3 LINE L1 -3 6152 4273 40802 58 14 2 chrY 19183527 19187923 -32325661 - L1P1 LINE L1 -1655 4500 14 730 310 33 22 chrY 19187933 19188391 -32325193 - L1PA13 LINE L1 -4655 2132 1670 1584 298 43 22 chrY 19188394 19189110 -32324474 + L1PA16 LINE L1 5417 6147 -19 1202 213 45 48 chrY 19189165 19189456 -32324128 + AluSx SINE Alu 1 290 -12 406 308 84 67 chrY 19189545 19190067 -32323517 - L1M3c LINE L1 -4537 1604 1074 22 0 0 0 chrY 19190231 19190253 -32323331 + AT_rich Low_complexity Low_complexity 1 22 0 233 153 28 68 chrY 19190415 19190591 -32322993 + (TTATA)n Simple_repeat Simple_repeat 5 173 0 288 176 88 13 chrY 19190649 19190808 -32322776 + (TA)n Simple_repeat Simple_repeat 1 171 0 21 0 0 0 chrY 19190908 19190929 -32322655 + AT_rich Low_complexity Low_complexity 1 21 0 282 182 26 0 chrY 19190945 19191022 -32322562 + (TA)n Simple_repeat Simple_repeat 1 79 0 1500 198 23 63 chrY 19241650 19242373 -32271211 - LTR12 LTR ERV1 0 714 381 1597 192 24 63 chrY 19242400 19243371 -32270213 - LTR12 LTR ERV1 0 714 362 1532 203 24 63 chrY 19243400 19244761 -32268823 - LTR12 LTR ERV1 0 714 366 1475 211 23 64 chrY 19244775 19245121 -32268463 - LTR12 LTR ERV1 0 714 383 1480 203 26 65 chrY 19245150 19246248 -32267336 - LTR12 LTR ERV1 0 714 362 1576 197 23 63 chrY 19246275 19247623 -32265961 - LTR12 LTR ERV1 0 714 381 1550 201 23 63 chrY 19247650 19248123 -32265461 - LTR12 LTR ERV1 0 714 381 1525 197 23 63 chrY 19248150 19248748 -32264836 - LTR12 LTR ERV1 0 714 381 1589 194 23 64 chrY 19248775 19250373 -32263211 - LTR12 LTR ERV1 0 714 381 1613 191 24 64 chrY 19250400 19251871 -32261713 - LTR12 LTR ERV1 0 714 381 1538 196 23 63 chrY 19251900 19252498 -32261086 - LTR12 LTR ERV1 0 714 381 1631 188 23 63 chrY 19252525 19253373 -32260211 - LTR12 LTR ERV1 0 714 381 1548 197 25 63 chrY 19253400 19253997 -32259587 - LTR12 LTR ERV1 0 714 381 1541 202 23 63 chrY 19254024 19254744 -32258840 - LTR12 LTR ERV1 0 714 381 1589 190 25 64 chrY 19254774 19256371 -32257213 - LTR12 LTR ERV1 0 714 381 1559 198 23 64 chrY 19256398 19257495 -32256089 - LTR12 LTR ERV1 0 714 381 1599 201 23 64 chrY 19257522 19258869 -32254715 - LTR12 LTR ERV1 0 714 381 1631 189 24 64 chrY 19258898 19260621 -32252963 - LTR12 LTR ERV1 0 714 381 1576 193 24 63 chrY 19260648 19261619 -32251965 - LTR12 LTR ERV1 0 714 362 1617 187 26 66 chrY 19261648 19262871 -32250713 - LTR12 LTR ERV1 0 714 381 1553 195 25 63 chrY 19262898 19263370 -32250214 - LTR12 LTR ERV1 0 714 381 1597 189 23 63 chrY 19263397 19264370 -32249214 - LTR12 LTR ERV1 0 714 381 1564 191 24 65 chrY 19264397 19264870 -32248714 - LTR12 LTR ERV1 0 714 381 1610 194 24 64 chrY 19264897 19268496 -32245088 - LTR12 LTR ERV1 0 714 381 1564 192 23 64 chrY 19268523 19269371 -32244213 - LTR12 LTR ERV1 0 714 381 1510 195 23 63 chrY 19269398 19269746 -32243838 - LTR12 LTR ERV1 0 714 381 1565 193 23 63 chrY 19269773 19270246 -32243338 - LTR12 LTR ERV1 0 714 381 1631 182 23 63 chrY 19270273 19270871 -32242713 - LTR12 LTR ERV1 0 714 381 1568 193 23 64 chrY 19270898 19271494 -32242090 - LTR12 LTR ERV1 0 714 383 1578 195 23 63 chrY 19271523 19271871 -32241713 - LTR12 LTR ERV1 0 714 381 1630 180 23 64 chrY 19271898 19272621 -32240963 - LTR12 LTR ERV1 0 714 381 1614 189 23 64 chrY 19272648 19273981 -32239603 - LTR12 LTR ERV1 0 714 381 1771 134 8 3 chrY 19274017 19274453 -32239131 - L1PA8A LINE L1 -592 5539 5100 721 198 14 66 chrY 19274442 19274654 -32238930 - L1PA12 LINE L1 -255 5913 5713 * 2559 255 51 118 chrY 19274678 19276546 -32237038 + L1 LINE L1 1884 3874 -2272 1207 181 4 18 chrY 19276546 19276773 -32236811 - AluSg/x SINE Alu -5 307 84 2559 255 51 118 chrY 19276773 19277329 -32236255 + L1 LINE L1 3874 4133 -2013 180 0 0 0 chrY 19277329 19277349 -32236235 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2559 255 51 118 chrY 19277349 19278050 -32235534 + L1 LINE L1 4133 4879 -1267 * 5820 94 21 32 chrY 19278040 19278708 -32234876 + L1PA8 LINE L1 4700 5374 -798 1943 151 3 3 chrY 19278708 19279007 -32234577 + AluSg SINE Alu 1 299 -11 5820 94 21 32 chrY 19279007 19279813 -32233771 + L1PA8 LINE L1 5374 6168 -4 435 265 2 3 chrY 19279823 19279969 -32233615 + L1PA16 LINE L1 5473 5616 -550 343 246 0 45 chrY 19279969 19280079 -32233505 + L1MC4 LINE L1 6604 6708 -1334 305 197 13 0 chrY 19280080 19280156 -32233428 + (TA)n Simple_repeat Simple_repeat 1 77 0 1088 259 41 0 chrY 19280174 19280468 -32233116 + L1PA16 LINE L1 5860 6165 -1 319 167 0 0 chrY 19281473 19281527 -32232057 + AluSq/x SINE Alu 66 119 -183 2307 90 0 3 chrY 19281552 19281864 -32231720 + AluY SINE Alu 1 311 0 2576 208 63 12 chrY 19282020 19282621 -32230963 - L1MA3 LINE L1 -226 7498 6867 4685 177 54 77 chrY 19282622 19283707 -32229877 - L1MA3 LINE L1 -4264 3301 2250 1817 166 0 3 chrY 19283707 19284002 -32229582 + AluSc SINE Alu 1 294 -15 4685 177 54 77 chrY 19284002 19284263 -32229321 - L1MA3 LINE L1 -5315 2250 1985 274 194 15 0 chrY 19284342 19284409 -32229175 + (CA)n Simple_repeat Simple_repeat 1 68 0 506 244 109 22 chrY 19284832 19285106 -32228478 - L1MC5 LINE L1 -444 7517 7220 946 270 106 13 chrY 19285117 19285672 -32227912 + L1ME3 LINE L1 2649 3255 -2891 998 277 70 48 chrY 19286051 19286506 -32227078 - MLT1C LTR MaLR -2 465 1 264 289 180 21 chrY 19286508 19287041 -32226543 + L1ME3 LINE L1 4036 4653 -1493 387 280 77 64 chrY 19287387 19287773 -32225811 + L1ME3 LINE L1 5052 5492 -670 626 294 70 49 chrY 19287801 19288106 -32225478 + L1ME3 LINE L1 5665 5985 -177 1927 135 3 14 chrY 19288106 19288402 -32225182 + AluSc SINE Alu 12 304 -5 626 294 70 49 chrY 19288402 19288582 -32225002 + L1ME3 LINE L1 5985 6160 -2 22 0 0 0 chrY 19288584 19288606 -32224978 + AT_rich Low_complexity Low_complexity 1 22 0 499 254 0 8 chrY 19288650 19288776 -32224808 + L1 LINE L1 3698 3822 -2324 614 266 0 37 chrY 19288790 19288978 -32224606 + AluJb SINE Alu 132 312 0 353 136 7 54 chrY 19289061 19289208 -32224376 + (TAAAA)n Simple_repeat Simple_repeat 5 144 0 297 208 8 56 chrY 19289210 19289335 -32224249 + A-rich Low_complexity Low_complexity 1 119 0 210 244 0 0 chrY 19289361 19289443 -32224141 + (AAATG)n Simple_repeat Simple_repeat 4 85 0 207 213 16 33 chrY 19289450 19289511 -32224073 + A-rich Low_complexity Low_complexity 5 64 0 1890 211 47 17 chrY 19289513 19290027 -32223557 + L1PA16 LINE L1 5602 6158 -5 1656 178 7 0 chrY 19290405 19290709 -32222875 + AluSx SINE Alu 1 306 -6 192 269 0 0 chrY 19290734 19290838 -32222746 + A-rich Low_complexity Low_complexity 2 105 0 211 266 38 0 chrY 19290845 19290924 -32222660 + (AAATG)n Simple_repeat Simple_repeat 4 85 0 41793 40 22 1 chrY 19290924 19296950 -32216634 + L1PA2 LINE L1 2 6154 -1 204 273 40 20 chrY 19296959 19297109 -32216475 + A-rich Low_complexity Low_complexity 5 157 0 368 327 0 88 chrY 19297140 19297299 -32216285 + AluJb SINE Alu 158 302 0 316 296 100 55 chrY 19297340 19297522 -32216062 + L1 LINE L1 2896 3099 -3047 323 96 19 0 chrY 19297522 19297574 -32216010 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 316 296 100 55 chrY 19297574 19297702 -32215882 + L1 LINE L1 3099 3220 -2926 315 290 67 77 chrY 19297775 19298058 -32215526 + L1 LINE L1 2818 2868 -3278 1823 147 46 0 chrY 19298058 19298343 -32215241 + AluSg SINE Alu 5 302 -8 315 290 67 77 chrY 19298343 19298785 -32214799 + L1 LINE L1 2868 3313 -2833 219 189 11 63 chrY 19298787 19298882 -32214702 + A-rich Low_complexity Low_complexity 5 94 0 189 178 0 0 chrY 19298953 19298998 -32214586 + A-rich Low_complexity Low_complexity 5 49 0 24 32 0 0 chrY 19299031 19299062 -32214522 + AT_rich Low_complexity Low_complexity 1 31 0 313 230 25 43 chrY 19299071 19299232 -32214352 + A-rich Low_complexity Low_complexity 2 159 0 25 51 0 0 chrY 19299234 19299273 -32214311 + AT_rich Low_complexity Low_complexity 1 39 0 215 279 39 19 chrY 19299351 19299505 -32214079 + A-rich Low_complexity Low_complexity 4 160 0 216 228 0 0 chrY 19299543 19299600 -32213984 + A-rich Low_complexity Low_complexity 3 59 0 214 248 43 34 chrY 19299638 19299755 -32213829 + (AAATG)n Simple_repeat Simple_repeat 3 120 0 237 120 0 60 chrY 19299852 19299902 -32213682 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 504 322 70 24 chrY 19300763 19301136 -32212448 - MLT1B LTR MaLR 0 390 1 257 256 58 16 chrY 19301262 19301383 -32212201 - MER67C LTR ERV1 -8 702 577 1677 173 20 10 chrY 19301442 19301563 -32212021 + AluY SINE Alu 1 119 -192 561 99 0 0 chrY 19301563 19301644 -32211940 + (TA)n Simple_repeat Simple_repeat 2 82 0 1677 173 20 10 chrY 19301644 19301822 -32211762 + AluY SINE Alu 119 303 -8 891 195 44 49 chrY 19301926 19302131 -32211453 + pTR5 LTR ERV1 738 941 -1497 40654 58 14 2 chrY 19302134 19303357 -32210227 - L1P1 LINE L1 -449 5706 4500 8812 47 3 0 chrY 19303357 19305233 -32208351 - L1PA3 LINE L1 -3 6152 4273 40654 58 14 2 chrY 19305233 19309629 -32203955 - L1P1 LINE L1 -1655 4500 14 775 310 33 22 chrY 19309639 19310097 -32203487 - L1PA13 LINE L1 -4655 2132 1670 1641 298 43 22 chrY 19310100 19310816 -32202768 + L1PA16 LINE L1 5417 6147 -19 1180 213 45 48 chrY 19310871 19311162 -32202422 + AluSx SINE Alu 1 290 -12 414 308 84 67 chrY 19311251 19311773 -32201811 - L1M3c LINE L1 -4537 1428 898 22 0 0 0 chrY 19311937 19311959 -32201625 + AT_rich Low_complexity Low_complexity 1 22 0 233 153 28 68 chrY 19312121 19312297 -32201287 + (TTATA)n Simple_repeat Simple_repeat 5 173 0 288 176 88 13 chrY 19312355 19312514 -32201070 + (TA)n Simple_repeat Simple_repeat 1 171 0 21 0 0 0 chrY 19312614 19312635 -32200949 + AT_rich Low_complexity Low_complexity 1 21 0 282 182 26 0 chrY 19312651 19312728 -32200856 + (TA)n Simple_repeat Simple_repeat 2 80 0 2206 260 56 36 chrY 19313528 19315332 -32198252 - L1MA9 LINE L1 -347 5965 4112 490 310 128 55 chrY 19315358 19315881 -32197703 - L1M3c LINE L1 -5090 865 305 1283 294 59 25 chrY 19315920 19317278 -32196306 - L1MB1 LINE L1 -230 5938 4534 706 323 45 6 chrY 19317451 19317785 -32195799 - L1MB2 LINE L1 -148 6023 5677 428 249 49 25 chrY 19317783 19317950 -32195634 - L1MB2 LINE L1 -1291 4855 4683 * 257 50 0 25 chrY 19319735 19319775 -32193809 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 491 204 0 26 chrY 19319775 19319888 -32193696 - L1PA10 LINE L1 -9 6159 6050 2469 187 63 10 chrY 19321246 19321751 -32191833 - LTR25 LTR ERV1 -273 521 49 6869 195 31 24 chrY 19321772 19323329 -32190255 - LTR25-int LTR ERV1 0 6996 5451 1958 132 0 4 chrY 19323329 19323656 -32189928 + AluY SINE Alu 3 328 0 6869 195 31 24 chrY 19323656 19323838 -32189746 - LTR25-int LTR ERV1 -1545 5451 2527 667 207 21 42 chrY 19323836 19324029 -32189555 - LTR25-int LTR ERV1 -2803 2414 2226 * 792 190 271 31 chrY 19324029 19324287 -32189297 - THE1B LTR MaLR 0 364 56 6347 176 3 1 chrY 19324327 19325366 -32188218 - THE1B-int LTR MaLR 0 1580 540 6859 254 46 19 chrY 19325366 19325459 -32188125 - LTR25-int LTR ERV1 -2293 4703 4614 5056 87 7 0 chrY 19325459 19326152 -32187432 - L1PA6 LINE L1 0 6154 5457 6859 254 46 19 chrY 19326152 19330842 -32182742 - LTR25-int LTR ERV1 -2382 4614 245 221 57 29 0 chrY 19330890 19330925 -32182659 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 3636 186 12 92 chrY 19331000 19331851 -32181733 - LTR25 LTR ERV1 0 794 12 347 141 39 0 chrY 19331860 19331938 -32181646 - LTR25-int LTR ERV1 -4029 2967 2887 * 5750 267 47 34 chrY 19331916 19335148 -32178436 - LTR25-int LTR ERV1 -3851 3240 1 3323 198 17 66 chrY 19335165 19336000 -32177584 - LTR25 LTR ERV1 0 794 1 30 0 0 0 chrY 19336073 19336103 -32177481 + AT_rich Low_complexity Low_complexity 1 30 0 182 117 106 11 chrY 19336112 19336206 -32177378 + (TTAAA)n Simple_repeat Simple_repeat 1 103 0 294 284 37 52 chrY 19336457 19336591 -32176993 - MER5A DNA MER1_type -57 132 1 25 90 0 0 chrY 19337426 19337493 -32176091 + AT_rich Low_complexity Low_complexity 1 67 0 5226 230 38 16 chrY 19337722 19340321 -32173263 - L1MA2 LINE L1 -103 7620 4969 1029 261 27 0 chrY 19340323 19340584 -32173000 + AluSx SINE Alu 1 268 -44 23 0 0 0 chrY 19340590 19340613 -32172971 + AT_rich Low_complexity Low_complexity 1 23 0 2781 259 86 18 chrY 19340613 19341114 -32172470 - L1MA2 LINE L1 -2586 4979 4513 1474 122 5 5 chrY 19341114 19341328 -32172256 - AluSc SINE Alu -11 298 85 2781 259 86 18 chrY 19341328 19342512 -32171072 - L1MA2 LINE L1 -3052 4513 3172 * 6625 301 46 7 chrY 19342508 19344492 -32169092 - L1MA2 LINE L1 -5493 2072 10 183 139 0 0 chrY 19345173 19345209 -32168375 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 1792 126 32 11 chrY 19345209 19345487 -32168097 - AluSg SINE Alu -26 284 1 1212 319 31 33 chrY 19346421 19346682 -32166902 - MER89-int LTR ERV1 -5183 1618 1358 1029 298 31 6 chrY 19346682 19347038 -32166546 - MLT1A1 LTR MaLR 0 365 1 1212 319 31 33 chrY 19347038 19347416 -32166168 - MER89-int LTR ERV1 -5443 1358 980 566 281 55 24 chrY 19347455 19347619 -32165965 - AluJo SINE Alu -23 289 121 769 174 0 0 chrY 19347619 19347751 -32165833 - MLT2C1 LTR ERVL -265 132 1 541 176 10 0 chrY 19347754 19347856 -32165728 + L1MD1 LINE L1 5803 5905 -337 * 3377 116 2 8 chrY 19347842 19348333 -32165251 + L1PA8 LINE L1 5650 6137 -35 1946 158 0 7 chrY 19348715 19349013 -32164571 + AluSq SINE Alu 1 296 -17 414 303 8 0 chrY 19349697 19349816 -32163768 - MER89 LTR ERV1 -14 545 426 455 233 4 0 chrY 19349905 19350042 -32163542 + L1MD3 LINE L1 6875 7042 -794 2681 221 49 7 chrY 19350095 19350707 -32162877 - MER89-int LTR ERV1 -2245 2972 2335 3525 195 50 12 chrY 19350711 19351531 -32162053 + L1MA1 LINE L1 5452 6302 0 270 240 99 23 chrY 19351562 19351733 -32161851 + L1MA2 LINE L1 3163 3346 -2800 * 717 46 0 0 chrY 19351724 19351811 -32161773 - L1PA4 LINE L1 -900 5246 5160 7351 40 2 0 chrY 19351812 19352732 -32160852 + L1PA4 LINE L1 5231 6152 -3 333 299 149 0 chrY 19352741 19352895 -32160689 + L1MA2 LINE L1 3324 3500 -2646 5782 66 12 0 chrY 19352903 19353664 -32159920 - L1P LINE L1 -1429 4717 3948 6888 63 9 0 chrY 19353751 19355139 -32158445 + L1PA5 LINE L1 4751 6148 -6 4683 82 34 3 chrY 19355139 19355780 -32157804 + L1PA5 LINE L1 5476 6141 -13 279 173 0 0 chrY 19355780 19355832 -32157752 + (TA)n Simple_repeat Simple_repeat 1 52 0 2207 265 14 5 chrY 19355844 19356463 -32157121 + L1MA2 LINE L1 3511 4135 -2011 4892 246 76 60 chrY 19356467 19358002 -32155582 - MER52A LTR ERV1 -4 1751 301 226 343 14 0 chrY 19358715 19358788 -32154796 - MER52A LTR ERV1 -1681 74 1 2377 223 39 55 chrY 19358788 19359663 -32153921 + L1MA2 LINE L1 4132 4992 -1154 1097 105 0 0 chrY 19359663 19359806 -32153778 + AluY SINE Alu 154 296 -15 4669 193 37 17 chrY 19359806 19361101 -32152483 + L1MA2 LINE L1 4990 6304 0 235 281 33 8 chrY 19361305 19361426 -32152158 + L1M4c LINE L1 1984 2107 -4923 544 305 57 7 chrY 19361510 19361850 -32151734 + L1M4c LINE L1 2053 2814 -4293 3471 256 26 11 chrY 19361990 19362498 -32151086 + L1PA15 LINE L1 4187 4686 -1479 423 0 0 0 chrY 19362498 19362545 -32151039 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3471 256 26 11 chrY 19362545 19363313 -32150271 + L1PA15 LINE L1 4686 5503 -662 2128 96 10 19 chrY 19363313 19363627 -32149957 + AluY SINE Alu 1 311 0 3471 256 26 11 chrY 19363627 19364281 -32149303 + L1PA15 LINE L1 5503 6146 -19 342 240 0 0 chrY 19364514 19364589 -32148995 - L1PA16 LINE L1 -193 5973 5899 1662 209 62 7 chrY 19364597 19365014 -32148570 - L1PA16 LINE L1 -364 5802 5363 559 258 47 56 chrY 19365048 19365281 -32148303 + L1M3a LINE L1 3 233 -5722 244 432 22 0 chrY 19365443 19365582 -32148002 + L1M3a LINE L1 363 504 -5451 1489 248 85 21 chrY 19365819 19366052 -32147532 + L1 LINE L1 4170 4387 -1759 434 153 0 59 chrY 19366052 19366137 -32147447 - MADE1 DNA Mariner 0 80 1 1489 248 85 21 chrY 19366137 19366624 -32146960 + L1 LINE L1 4387 4936 -1210 288 0 0 0 chrY 19366624 19366656 -32146928 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 1047 275 12 0 chrY 19366728 19366972 -32146612 + L1M1 LINE L1 1518 1764 -5801 444 297 48 14 chrY 19366988 19367133 -32146451 - MER61D LTR ERV1 -14 487 338 936 227 20 0 chrY 19367594 19367797 -32145787 + L1M1 LINE L1 1771 1977 -5588 1370 289 62 26 chrY 19369331 19370223 -32143361 + Tigger3b DNA MER2_type 217 1140 -91 1292 82 8 26 chrY 19370256 19370497 -32143087 - L1P2 LINE L1 -368 5787 5548 350 103 0 29 chrY 19370499 19370567 -32143017 + L1PA6 LINE L1 6089 6154 0 997 277 62 16 chrY 19370573 19370815 -32142769 + HUERS-P2 LTR ERV1 293 545 -2543 12219 199 34 43 chrY 19370890 19372130 -32141454 + HUERS-P2 LTR ERV1 534 1785 -1303 3581 109 2 6 chrY 19372130 19372643 -32140941 - MER9 LTR ERVK 0 511 1 12219 199 34 43 chrY 19372643 19372975 -32140609 + HUERS-P2 LTR ERV1 1785 2119 -969 1847 116 0 0 chrY 19372975 19373217 -32140367 - AluY SINE Alu -69 242 1 12219 199 34 43 chrY 19373217 19374223 -32139361 + HUERS-P2 LTR ERV1 2119 3088 0 1497 171 32 141 chrY 19374227 19374667 -32138917 + LTR1 LTR ERV1 9 400 -385 2315 124 8 11 chrY 19374680 19375036 -32138548 + THE1A LTR MaLR 1 355 0 3273 109 17 0 chrY 19375036 19375511 -32138073 + THE1A-int LTR MaLR 1 483 -1097 * 5773 150 6 0 chrY 19375504 19376385 -32137199 + THE1A-int LTR MaLR 695 1580 0 2283 142 3 0 chrY 19376385 19376737 -32136847 + THE1A LTR MaLR 1 353 -2 1961 201 10 31 chrY 19376739 19377127 -32136457 + LTR1 LTR ERV1 406 785 0 339 127 0 0 chrY 19377752 19377807 -32135777 - AluSc SINE Alu 0 299 245 1034 193 0 16 chrY 19377807 19377994 -32135590 - AluSq SINE Alu -129 184 1 1055 85 13 0 chrY 19378443 19378596 -32134988 + L1PA5 LINE L1 5997 6151 -3 21 0 0 0 chrY 19379627 19379648 -32133936 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chrY 19379913 19379937 -32133647 + AT_rich Low_complexity Low_complexity 1 24 0 38708 85 5 1 chrY 19380220 19386332 -32127252 - L1PA5 LINE L1 -6 6148 11 3340 182 27 10 chrY 19388288 19388886 -32124698 - LTR19C LTR ERV1 0 779 172 4432 189 10 20 chrY 19388888 19389703 -32123881 - HUERS-P3 LTR ERV1 -5476 3443 2637 3457 246 78 33 chrY 19389697 19390506 -32123078 - HUERS-P3 LTR ERV1 -4639 2357 1289 * 4751 111 12 6 chrY 19390506 19391189 -32122395 + LTR12 LTR ERV1 2 688 0 3457 246 78 33 chrY 19391189 19391579 -32122005 - HUERS-P3 LTR ERV1 -5707 1289 918 376 241 0 0 chrY 19391590 19391669 -32121915 - HUERS-P3 LTR ERV1 -8086 833 755 1657 259 54 47 chrY 19391986 19392493 -32121091 - HUERS-P3 LTR ERV1 -8310 609 96 1175 164 188 12 chrY 19392493 19392749 -32120835 + AluSx SINE Alu 2 302 0 1657 259 54 47 chrY 19392749 19392832 -32120752 - HUERS-P3 LTR ERV1 -8823 96 15 2443 171 40 57 chrY 19392987 19393518 -32120066 - LTR19C LTR ERV1 -257 522 1 275 310 45 34 chrY 19393645 19393913 -32119671 - MER67C LTR ERV1 -75 635 365 769 304 22 29 chrY 19394276 19394684 -32118900 - L1PA13 LINE L1 -4710 2077 1673 789 283 38 26 chrY 19394690 19394917 -32118667 + L1MA3 LINE L1 5417 5657 -648 369 0 0 0 chrY 19394917 19394958 -32118626 + (TAA)n Simple_repeat Simple_repeat 2 42 0 789 283 38 26 chrY 19394958 19395160 -32118424 + L1MA3 LINE L1 5657 5855 -450 423 0 0 0 chrY 19395902 19395949 -32117635 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 17390 21 0 0 chrY 19395949 19398754 -32114830 - L1HS LINE L1 -11 6144 3340 5407 41 0 0 chrY 19398750 19399440 -32114144 + L1P LINE L1 2721 3410 -2736 * 425 286 74 16 chrY 19399555 19399744 -32113840 - LTR36 LTR ERV1 -411 200 1 23227 68 7 1 chrY 19400091 19406134 -32107450 + L1PA4 LINE L1 2 6151 -4 459 228 117 7 chrY 19406350 19406495 -32107089 - LTR36-int LTR ERV1 -181 6150 5990 228 184 0 0 chrY 19406626 19406675 -32106909 + (CA)n Simple_repeat Simple_repeat 2 50 0 2643 270 77 58 chrY 19406693 19408638 -32104946 - LTR36-int LTR ERV1 -611 5335 3581 24 53 0 0 chrY 19408797 19408835 -32104749 + AT_rich Low_complexity Low_complexity 1 38 0 1368 268 49 59 chrY 19409669 19410241 -32103343 - LTR36 LTR ERV1 0 611 46 1410 245 9 7 chrY 19410265 19410693 -32102891 + L1 LINE L1 4729 5157 -989 859 95 32 0 chrY 19410690 19410816 -32102768 - L1P3 LINE L1 -633 5521 5392 * 327 302 53 42 chrY 19411282 19411682 -32101902 + L1M4c LINE L1 1250 2053 -4330 5715 78 9 16 chrY 19411794 19412604 -32100980 + L1PA7 LINE L1 5344 6147 -7 25 0 0 0 chrY 19412610 19412635 -32100949 + AT_rich Low_complexity Low_complexity 1 25 0 313 319 43 18 chrY 19412875 19413038 -32100546 - L1MEc LINE L1 -3946 2617 2451 464 288 44 26 chrY 19413694 19413923 -32099661 - L1M2 LINE L1 -4346 2503 2271 307 346 44 34 chrY 19413931 19414136 -32099448 - L1MEc LINE L1 -4999 1385 1179 8796 222 38 17 chrY 19414150 19416077 -32097507 + L1M1 LINE L1 490 2456 -5109 3923 241 186 10 chrY 19416074 19417543 -32096041 + L1M1 LINE L1 3760 5487 -2078 * 404 289 16 0 chrY 19418038 19418159 -32095425 + LTR55 LTR ERV 4 126 -422 2185 107 0 3 chrY 19418161 19418452 -32095132 - AluY SINE Alu -21 290 1 15093 221 41 29 chrY 19418750 19419038 -32094546 - L1M1 LINE L1 -676 7045 6762 1670 197 7 7 chrY 19419038 19419347 -32094237 + AluSx SINE Alu 4 312 0 15093 221 41 29 chrY 19419347 19422535 -32091049 - L1M1 LINE L1 -959 6762 3614 483 18 0 0 chrY 19422535 19422591 -32090993 + (TG)n Simple_repeat Simple_repeat 1 56 0 15093 221 41 29 chrY 19422591 19426047 -32087537 - L1M1 LINE L1 -4107 3614 10 21 82 0 0 chrY 19426195 19426244 -32087340 + AT_rich Low_complexity Low_complexity 1 49 0 291 319 43 6 chrY 19426267 19426430 -32087154 - L1M2 LINE L1 -5137 1632 1464 9482 42 2 0 chrY 19426732 19427926 -32085658 - L1PA3 LINE L1 -2237 3909 2714 12148 37 1 1 chrY 19427926 19430189 -32083395 + L1PA3 LINE L1 3903 6171 0 385 263 26 77 chrY 19431258 19431414 -32082170 - L1M2 LINE L1 -5803 966 819 403 307 59 46 chrY 19431419 19431725 -32081859 - Cheshire DNA MER1_type -1851 569 260 426 250 17 17 chrY 19432130 19432250 -32081334 + LTR55 LTR ERV 7 126 -422 2907 216 54 75 chrY 19435691 19436367 -32077217 + Tigger3b DNA MER2_type 1 642 -2386 1021 268 80 0 chrY 19436367 19436643 -32076941 + AluJo SINE Alu 5 302 0 2907 216 54 75 chrY 19436643 19437183 -32076401 + Tigger3b DNA MER2_type 642 1192 -39 850 19 0 19 chrY 19438122 19438229 -32075355 + L1PA2 LINE L1 6047 6151 -4 358 244 193 11 chrY 19439152 19439328 -32074256 - Cheshire DNA MER1_type -2078 342 135 249 258 116 45 chrY 19439954 19440109 -32073475 + LTR55 LTR ERV 4 169 -379 280 329 91 9 chrY 19440258 19440468 -32073116 + LTR55 LTR ERV 300 526 -22 365 276 57 84 chrY 19440509 19440806 -32072778 + LTR55 LTR ERV 102 390 -158 1903 138 0 14 chrY 19443470 19443752 -32069832 - AluSg SINE Alu -24 286 9 250 208 0 0 chrY 19443802 19443850 -32069734 + 5S rRNA rRNA 74 121 0 24 0 0 0 chrY 19444240 19444264 -32069320 + AT_rich Low_complexity Low_complexity 1 24 0 373 200 39 2 chrY 19444507 19444856 -32068728 + (TA)n Simple_repeat Simple_repeat 1 361 0 1982 174 51 10 chrY 19444979 19445479 -32068105 - L1MA2 LINE L1 0 6304 5752 570 154 26 4 chrY 19445527 19445643 -32067941 + L1M1 LINE L1 5389 5503 -683 237 51 77 0 chrY 19445636 19445675 -32067909 + L1M1 LINE L1 5462 5503 -799 * 237 51 77 0 chrY 19445668 19445707 -32067877 + L1M1 LINE L1 5462 5503 -801 * 310 140 0 0 chrY 19445700 19445757 -32067827 + L1M1 LINE L1 5462 5518 -786 1013 151 245 4 chrY 19445804 19446049 -32067535 + L1M1 LINE L1 5456 5759 -545 2151 227 76 50 chrY 19446085 19446903 -32066681 + Tigger3(Golem) DNA MER2_type 2152 2990 -39 1079 221 123 29 chrY 19448480 19448829 -32064755 - MER61A-int LTR ERV1 -4835 382 1 1778 216 9 9 chrY 19448830 19449173 -32064411 - MER61A LTR ERV1 0 343 1 337 240 13 0 chrY 19449773 19449848 -32063736 + MER52A LTR ERV1 1643 1718 -37 1324 212 11 19 chrY 19450104 19450373 -32063211 + AluSx SINE Alu 1 267 -45 386 168 17 84 chrY 19450415 19450534 -32063050 - MER83A-int LTR ERV1 -2545 1740 1630 1838 174 0 0 chrY 19450817 19451110 -32062474 - AluSc SINE Alu -16 293 1 37906 73 5 3 chrY 19451133 19457275 -32056309 + L1PA4 LINE L1 2 6155 0 3057 49 0 5 chrY 19457275 19457662 -32055922 + L1PA5 LINE L1 5770 6154 0 306 50 0 0 chrY 19458005 19458045 -32055539 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1638 119 0 0 chrY 19458045 19458263 -32055321 - AluSx SINE Alu -90 222 5 313 262 21 50 chrY 19458733 19458874 -32054710 - LTR45 LTR ERV1 0 525 389 21 0 0 0 chrY 19459903 19459924 -32053660 + AT_rich Low_complexity Low_complexity 1 21 0 1626 113 84 0 chrY 19459975 19460214 -32053370 - AluSg SINE Alu -17 293 35 351 229 64 90 chrY 19461140 19461396 -32052188 + LTR25 LTR ERV1 9 293 -424 1698 228 63 29 chrY 19461424 19461947 -32051637 + LTR25 LTR ERV1 254 794 0 1157 213 62 18 chrY 19461966 19462238 -32051346 + HUERS-P3 LTR ERV1 4 287 -6709 14414 252 38 28 chrY 19462269 19464358 -32049226 + HUERS-P3 LTR ERV1 366 2434 -6485 2310 115 0 6 chrY 19464358 19464671 -32048913 + AluY SINE Alu 1 311 0 14414 252 38 28 chrY 19464671 19467952 -32045632 + HUERS-P3 LTR ERV1 2434 5646 -3273 2474 276 19 6 chrY 19467966 19468663 -32044921 + HUERS-P3 LTR ERV1 5758 6463 -2456 1404 255 91 0 chrY 19468670 19469101 -32044483 + HUERS-P3 LTR ERV1 6724 7193 -1726 1138 182 31 22 chrY 19469147 19469467 -32044117 + LTR25 LTR ERV1 378 565 -4 2568 208 44 53 chrY 19470213 19470878 -32042706 - LTR25 LTR ERV1 -135 659 1 8076 299 42 21 chrY 19470880 19473804 -32039780 - HUERS-P3 LTR ERV1 -3 8916 5931 962 122 0 0 chrY 19473804 19473935 -32039649 + AluSc SINE Alu 1 131 -178 5480 130 39 32 chrY 19473935 19476207 -32037377 + SVA Other Other 28 1386 0 1154 137 6 0 chrY 19476214 19476382 -32037202 + AluSg/x SINE Alu 122 290 -22 16607 269 33 26 chrY 19476386 19481424 -32032160 - HUERS-P3 LTR ERV1 -2982 5937 1013 2087 142 3 10 chrY 19481424 19481735 -32031849 + AluSp SINE Alu 1 309 -4 16607 269 33 26 chrY 19481735 19481992 -32031592 - HUERS-P3 LTR ERV1 -7906 1013 759 265 183 67 0 chrY 19482001 19482061 -32031523 - HUERS-P3 LTR ERV1 -6174 822 759 2389 225 19 28 chrY 19482070 19482639 -32030945 - HUERS-P3 LTR ERV1 -6174 822 259 354 219 10 62 chrY 19482643 19482739 -32030845 - HUERS-P3 LTR ERV1 -6905 91 1 2629 231 100 29 chrY 19482756 19483384 -32030200 - LTR25 LTR ERV1 0 794 105 2116 124 0 7 chrY 19483384 19483691 -32029893 - AluSc SINE Alu -4 305 1 2629 231 100 29 chrY 19483691 19483794 -32029790 - LTR25 LTR ERV1 -689 105 11 323 294 169 0 chrY 19483808 19483944 -32029640 - MSTA LTR MaLR -269 159 1 2891 220 42 47 chrY 19483946 19484147 -32029437 - MSTA-int LTR MaLR -2 1578 1377 2101 102 19 38 chrY 19484147 19484462 -32029122 + AluSc SINE Alu 1 309 0 2891 220 42 47 chrY 19484462 19484979 -32028605 - MSTA-int LTR MaLR -203 1377 864 510 240 50 0 chrY 19485049 19485170 -32028414 + Cheshire DNA MER1_type 241 367 -2053 249 57 0 0 chrY 19485213 19485248 -32028336 + (CA)n Simple_repeat Simple_repeat 2 36 0 664 318 16 55 chrY 19485369 19485680 -32027904 + L1M3a LINE L1 11 309 -5646 10925 243 59 49 chrY 19486436 19488698 -32024886 + L1PA12 LINE L1 1218 3454 -4130 6341 175 41 38 chrY 19488698 19489975 -32023609 + HSMAR1 DNA Mariner 3 1283 -4 10925 243 59 49 chrY 19489975 19490727 -32022857 + L1PA12 LINE L1 3454 4197 -3387 198 0 0 0 chrY 19490727 19490749 -32022835 + (CAA)n Simple_repeat Simple_repeat 3 24 0 10925 243 59 49 chrY 19490749 19491848 -32021736 + L1PA12 LINE L1 4197 6195 -1389 379 312 38 17 chrY 19492210 19492447 -32021137 + L1M4 LINE L1 4696 4937 -1209 21 0 0 0 chrY 19492634 19492655 -32020929 + AT_rich Low_complexity Low_complexity 1 21 0 2075 100 3 28 chrY 19493575 19493907 -32019677 + AluSq SINE Alu 1 325 0 374 248 55 0 chrY 19493968 19494077 -32019507 - LTR54B LTR ERV1 -383 115 1 460 140 120 0 chrY 19494126 19494238 -32019346 - MER57-int LTR ERV1 -549 6988 6884 290 236 51 72 chrY 19494500 19494695 -32018889 - L1M4 LINE L1 -3810 2336 2146 537 216 78 0 chrY 19494703 19494819 -32018765 - THE1C LTR MaLR -248 127 3 7820 164 70 15 chrY 19494821 19496316 -32017268 - THE1C-int LTR MaLR 0 1580 4 1538 176 66 36 chrY 19496319 19496683 -32016901 - THE1C LTR MaLR 0 375 1 1571 257 27 37 chrY 19496683 19497196 -32016388 + MER67C LTR ERV1 188 695 -15 259 235 0 49 chrY 19497342 19497423 -32016161 + L1 LINE L1 3349 3425 -2721 424 264 275 16 chrY 19497469 19497836 -32015748 + L1 LINE L1 3349 3810 -2336 964 114 38 0 chrY 19498087 19498245 -32015339 + AluSg SINE Alu 1 164 -146 296 60 0 20 chrY 19498245 19498295 -32015289 + AluSg/q SINE Alu 253 301 -2 216 0 0 0 chrY 19499851 19499875 -32013709 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1755 55 97 100 chrY 19500480 19500789 -32012795 + AluY SINE Alu 1 308 -3 1236 228 7 11 chrY 19502896 19503181 -32010403 + AluJb SINE Alu 13 296 -16 388 241 59 79 chrY 19503473 19503763 -32009821 - L1MC4 LINE L1 -23 8019 7736 2118 125 0 0 chrY 19504260 19504563 -32009021 - AluSx SINE Alu -9 303 1 222 37 0 0 chrY 19505139 19505166 -32008418 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1785 159 0 0 chrY 19505166 19505442 -32008142 - AluSq SINE Alu -37 276 1 274 235 29 0 chrY 19505820 19505888 -32007696 + L1MC4 LINE L1 7450 7519 -523 25 31 0 0 chrY 19506132 19506164 -32007420 + AT_rich Low_complexity Low_complexity 1 32 0 633 194 142 8 chrY 19506191 19506325 -32007259 + FRAM SINE Alu 14 165 -11 1375 220 102 9 chrY 19506381 19506713 -32006871 - MLT1A1 LTR MaLR -2 363 1 1195 208 59 28 chrY 19506994 19507282 -32006302 - AluJb SINE Alu -4 298 2 25 31 0 0 chrY 19507353 19507385 -32006199 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chrY 19507954 19507988 -32005596 + AT_rich Low_complexity Low_complexity 1 34 0 28 48 0 0 chrY 19508069 19508111 -32005473 + AT_rich Low_complexity Low_complexity 1 42 0 328 264 85 8 chrY 19508422 19508551 -32005033 - L1M4 LINE L1 -3465 3179 3041 * 2119 252 179 12 chrY 19508542 19509390 -32004194 - L1M4 LINE L1 -5193 1349 360 767 271 24 8 chrY 19509449 19509696 -32003888 - L1M4 LINE L1 -6281 261 11 246 314 54 97 chrY 19510016 19510201 -32003383 + MER5B DNA MER1_type 2 178 0 2329 79 7 0 chrY 19510227 19510519 -32003065 - AluY SINE Alu -17 294 1 1481 189 0 25 chrY 19512099 19512380 -32001204 - AluSx SINE Alu -17 295 22 351 65 0 0 chrY 19512997 19513043 -32000541 + (GA)n Simple_repeat Simple_repeat 1 46 0 234 0 0 0 chrY 19513043 19513069 -32000515 + (TG)n Simple_repeat Simple_repeat 2 27 0 2186 107 14 0 chrY 19513292 19513581 -32000003 + AluSg SINE Alu 4 296 -14 1294 181 7 6 chrY 19514101 19514383 -31999201 - MER4B LTR ERV1 0 610 261 429 167 89 0 chrY 19514384 19514474 -31999110 - MER4A LTR ERV1 -566 98 1 2033 143 0 0 chrY 19516159 19516460 -31997124 + AluSx SINE Alu 6 306 -6 2147 85 25 0 chrY 19516526 19516809 -31996775 + AluY SINE Alu 1 290 -21 2256 82 7 10 chrY 19516874 19517179 -31996405 - AluYb8 SINE Alu -9 309 6 183 80 0 0 chrY 19517184 19517209 -31996375 + (TTCCC)n Simple_repeat Simple_repeat 1 25 0 3796 33 0 0 chrY 19517372 19517829 -31995755 - L1PA3 LINE L1 -895 5251 4795 7429 28 7 0 chrY 19517829 19518740 -31994844 + L1PA3 LINE L1 5258 6177 0 1983 196 74 70 chrY 19519001 19519676 -31993908 + L1MA3 LINE L1 4374 5051 -1095 3456 230 48 9 chrY 19519689 19520436 -31993148 + L1 LINE L1 23 798 -6767 1411 175 35 166 chrY 19520435 19521120 -31992464 + L1MA3 LINE L1 5708 6302 0 * 3805 206 68 12 chrY 19521107 19522165 -31991419 + L1PA16 LINE L1 5020 6130 -36 2711 225 86 12 chrY 19522192 19523088 -31990496 + L1 LINE L1 4672 5633 -1932 401 255 20 103 chrY 19523155 19523528 -31990056 + L1MA9 LINE L1 4049 4367 -1779 348 317 38 55 chrY 19523593 19523886 -31989698 + L1M4 LINE L1 514 801 -5741 249 195 0 0 chrY 19524134 19524175 -31989409 - MER2 DNA MER2_type -304 41 1 236 191 73 15 chrY 19524184 19524252 -31989332 + L1MA9 LINE L1 5588 5659 -641 1254 230 64 21 chrY 19524253 19524719 -31988865 + L1MA9 LINE L1 5791 6276 -36 870 254 14 84 chrY 19524743 19525160 -31988424 - L1 LINE L1 -2415 3731 3344 * 1148 248 157 20 chrY 19525127 19525687 -31987897 + L1 LINE L1 3711 4347 -1799 1456 257 59 59 chrY 19525724 19526402 -31987182 - L1PA15-16 LINE L1 -1367 5482 4805 5026 100 11 4 chrY 19526410 19527162 -31986422 + L1PA6 LINE L1 4300 5056 -1090 1181 21 7 0 chrY 19527159 19527299 -31986285 - L1PA4 LINE L1 -278 5877 5737 * 2267 58 0 3 chrY 19527299 19527591 -31985993 + L1PA4 LINE L1 5862 6152 -3 3375 127 39 14 chrY 19527598 19528167 -31985417 + L1PB3 LINE L1 5572 6154 0 198 0 0 0 chrY 19528276 19528298 -31985286 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6343 75 19 13 chrY 19528302 19529406 -31984178 + L1PA6 LINE L1 5046 6154 0 5265 272 90 23 chrY 19529416 19530632 -31982952 - L1PA15-16 LINE L1 -2056 4793 3661 375 60 0 0 chrY 19530632 19530682 -31982902 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5265 272 90 23 chrY 19530682 19532411 -31981173 - L1PA15-16 LINE L1 -3188 3661 1662 607 98 0 0 chrY 19532411 19532503 -31981081 + L1PA7 LINE L1 6063 6154 0 3478 108 28 9 chrY 19532508 19533047 -31980537 + HERVFH19I LTR ERV1 1414 1962 -3624 27 0 0 0 chrY 19533468 19533495 -31980089 + AT_rich Low_complexity Low_complexity 1 27 0 2255 138 0 0 chrY 19534992 19535304 -31978280 + AluSx SINE Alu 1 312 0 5424 224 73 42 chrY 19535526 19535915 -31977669 + HERVFH19I LTR ERV1 4361 4737 -2681 2180 102 10 26 chrY 19535915 19536228 -31977356 - AluY SINE Alu -3 308 1 5424 224 73 42 chrY 19536228 19537656 -31975928 + HERVFH19I LTR ERV1 4737 6233 -1185 21 0 0 0 chrY 19537656 19537677 -31975907 + AT_rich Low_complexity Low_complexity 1 21 0 35400 88 15 3 chrY 19537793 19543861 -31969723 - L1PA5 LINE L1 0 6154 13 1603 80 4 0 chrY 19543871 19544108 -31969476 + HERVFH19I LTR ERV1 4263 4500 -1086 613 185 31 62 chrY 19544094 19544256 -31969328 + HERVFH19I LTR ERV1 4709 4865 -721 * 844 175 6 6 chrY 19544252 19544412 -31969172 + HERVFH19I LTR ERV1 7558 7717 -2 3515 120 41 0 chrY 19544419 19544976 -31968608 + LTR19B LTR ERV1 1 580 0 2341 246 39 65 chrY 19545196 19546152 -31967432 + LTR49-int LTR ERV1 359 1289 -5042 2435 260 51 33 chrY 19546404 19547338 -31966246 + LTR49-int LTR ERV1 1372 2322 -4009 271 114 14 143 chrY 19547412 19547482 -31966102 + MADE1 DNA Mariner 20 80 0 262 233 11 0 chrY 19547722 19547812 -31965772 + LTR49-int LTR ERV1 1722 1812 -4786 3662 150 19 39 chrY 19547836 19548578 -31965006 - L1MA1 LINE L1 0 6302 5576 751 219 15 5 chrY 19548578 19548779 -31964805 - L1MA1 LINE L1 -1293 4853 4651 * 2184 182 53 16 chrY 19548767 19549615 -31963969 - L1M1 LINE L1 -728 6996 6115 11261 41 6 0 chrY 19549627 19551079 -31962505 - L1PA3 LINE L1 -1163 4983 3523 7412 35 6 2 chrY 19551079 19552242 -31961342 + L1PA3 LINE L1 4990 6155 0 6659 229 70 10 chrY 19552245 19554374 -31959210 - L1M1 LINE L1 -1462 6103 3846 11099 229 72 7 chrY 19554388 19557145 -31956439 - L1M1 LINE L1 -4618 2947 13 1709 249 51 77 chrY 19557165 19558152 -31955432 + LTR49-int LTR ERV1 2707 2936 -1944 11188 217 38 19 chrY 19558152 19561951 -31951633 - L1PB1 LINE L1 0 6867 2938 2074 135 0 13 chrY 19561951 19562262 -31951322 - AluY SINE Alu -3 308 2 11188 217 38 19 chrY 19562262 19563912 -31949672 - L1PB1 LINE L1 -3929 2938 1321 288 0 0 0 chrY 19563914 19563946 -31949638 + (T)n Simple_repeat Simple_repeat 1 32 0 3267 235 117 14 chrY 19563946 19564993 -31948591 - L1PB1 LINE L1 -5704 1159 6 26 23 0 23 chrY 19565018 19565040 -31948544 + AT_rich Low_complexity Low_complexity 1 22 -21 1963 92 50 0 chrY 19565040 19565301 -31948283 - AluY SINE Alu -16 295 22 26 23 0 23 chrY 19565301 19565322 -31948262 + AT_rich Low_complexity Low_complexity 22 43 0 1373 232 100 39 chrY 19565360 19566049 -31947535 + LTR49-int LTR ERV1 3703 4433 -1898 1340 229 92 14 chrY 19566051 19566466 -31947118 + LTR2 LTR ERV1 3 449 0 2104 172 3 15 chrY 19566466 19566856 -31946728 + Harlequin LTR ERV1 1 385 -6511 267 297 109 7 chrY 19566927 19567065 -31946519 + Harlequin LTR ERV1 337 488 -6161 38954 174 14 19 chrY 19567103 19574445 -31939139 + Harlequin LTR ERV1 512 7811 -2 1463 242 79 7 chrY 19574447 19574864 -31938720 + LTR2 LTR ERV1 3 449 0 1651 241 58 40 chrY 19574864 19575636 -31937948 + LTR49-int LTR ERV1 4430 5215 -1116 646 258 77 65 chrY 19575655 19575896 -31937688 + LTR49-int LTR ERV1 5790 6027 -304 1487 176 78 4 chrY 19575896 19576152 -31937432 + AluSg SINE Alu 1 275 -35 646 258 77 65 chrY 19576152 19576430 -31937154 + LTR49-int LTR ERV1 6027 6315 -16 977 195 107 102 chrY 19576453 19576883 -31936701 + LTR49 LTR ERV1 1 432 -163 4423 236 31 45 chrY 19576969 19577124 -31936460 + L1PBa LINE L1 3 159 -6704 2898 13 0 0 chrY 19577124 19577441 -31936143 + AluYb8 SINE Alu 1 317 -1 4423 236 31 45 chrY 19577441 19580634 -31932950 + L1PBa LINE L1 159 2358 -4505 2976 143 2 2 chrY 19580666 19581120 -31932464 + LTR22A LTR ERVK 5 458 0 341 203 16 0 chrY 19581120 19581184 -31932400 + HERVK22 LTR ERVK 1 65 -6772 1355 96 0 6 chrY 19581187 19581364 -31932220 + AluSc SINE Alu 1 176 -133 370 77 0 0 chrY 19581364 19581416 -31932168 + AluSp/q SINE Alu 247 298 -5 22706 139 13 2 chrY 19581431 19586782 -31926802 + HERVK22 LTR ERVK 91 5545 -1292 1039 214 9 18 chrY 19586782 19587002 -31926582 - AluJo SINE Alu -56 256 39 521 266 0 0 chrY 19587002 19587115 -31926469 + AluJo SINE Alu 98 210 -102 2855 148 11 13 chrY 19587145 19587606 -31925978 + LTR46 LTR ERV1 1 460 0 2947 139 73 0 chrY 19587606 19588111 -31925473 + LTR46-int LTR ERV1 1 542 -6443 1071 160 6 18 chrY 19588213 19588382 -31925202 + AluSc SINE Alu 111 277 -32 982 38 22 49 chrY 19588385 19588570 -31925014 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 1115 147 8 50 chrY 19588738 19588976 -31924608 + LTR46-int LTR ERV1 658 885 -6100 * 15641 163 20 12 chrY 19588971 19590410 -31923174 + LTR46-int LTR ERV1 991 2418 -4567 1874 154 7 7 chrY 19590410 19590708 -31922876 + AluSg SINE Alu 1 298 -12 15641 163 20 12 chrY 19590708 19592163 -31921421 + LTR46-int LTR ERV1 2418 3907 -3078 1088 191 35 0 chrY 19592165 19592396 -31921188 + LTR46-int LTR ERV1 6747 6985 0 323 132 0 0 chrY 19592396 19592449 -31921135 + LTR46 LTR ERV1 1 53 -407 3020 136 2 13 chrY 19592455 19592920 -31920664 + LTR46 LTR ERV1 1 460 0 518 286 8 0 chrY 19592922 19593055 -31920529 + AluJb SINE Alu 169 302 -10 825 238 127 51 chrY 19593068 19593501 -31920083 + L1MA8 LINE L1 5819 6284 -7 332 316 8 8 chrY 19593660 19593777 -31919807 - L1M3a LINE L1 -5836 119 3 866 273 24 6 chrY 19593792 19594122 -31919462 - L1M4c LINE L1 -4739 1645 1310 536 329 58 0 chrY 19594142 19594349 -31919235 - AluJo SINE Alu -52 260 42 325 258 81 78 chrY 19594413 19594630 -31918954 - L1M3c LINE L1 -4605 1536 1321 1787 166 11 3 chrY 19594630 19594914 -31918670 - AluSg SINE Alu -24 286 1 325 258 81 78 chrY 19594914 19595313 -31918271 - L1M3c LINE L1 -4820 1321 918 21 0 0 0 chrY 19595590 19595611 -31917973 + AT_rich Low_complexity Low_complexity 1 21 0 575 271 108 6 chrY 19595681 19595982 -31917602 + L1M1 LINE L1 2652 3301 -4265 482 257 56 63 chrY 19596175 19596796 -31916788 + L1M1 LINE L1 3314 3930 -3635 728 303 22 46 chrY 19596799 19597211 -31916373 + L1PA6 LINE L1 189 590 -6259 31197 122 22 7 chrY 19597459 19603504 -31910080 + L1PA6 LINE L1 714 6846 -11 247 285 23 8 chrY 19603512 19603642 -31909942 + L1 LINE L1 3653 3784 -3781 418 243 29 52 chrY 19603653 19603789 -31909795 + FLAM_C SINE Alu 1 133 -10 1247 167 91 1 chrY 19603819 19604122 -31909462 + L1PA16 LINE L1 5594 5924 -242 6580 228 26 43 chrY 19604136 19604771 -31908813 + MER66B-int LTR ERV1 2470 3114 -3562 1990 151 27 0 chrY 19604771 19605069 -31908515 - AluSg SINE Alu -3 307 2 6580 228 26 43 chrY 19605069 19606265 -31907319 + MER66B-int LTR ERV1 3114 4270 -2406 9956 197 19 18 chrY 19606353 19606820 -31906764 + MER66B-int LTR ERV1 4604 5069 -1607 3029 139 26 12 chrY 19606820 19607324 -31906260 - MER9 LTR ERVK 0 511 1 9956 197 19 18 chrY 19607324 19608927 -31904657 + MER66B-int LTR ERV1 5069 6676 0 2115 235 13 6 chrY 19608927 19609404 -31904180 + MER66B LTR ERV1 1 480 -6 432 252 94 15 chrY 19609423 19610013 -31903571 - L1M2 LINE L1 -2840 4008 3258 2032 258 83 46 chrY 19610024 19610537 -31903047 - L1M2 LINE L1 -3766 3082 2590 1570 181 3 62 chrY 19610537 19610846 -31902738 - AluSx SINE Alu -10 302 12 2032 258 83 46 chrY 19610846 19611602 -31901982 - L1M2 LINE L1 -4258 2590 1759 2734 229 59 18 chrY 19611620 19612422 -31901162 - L1PB4 LINE L1 -5 6151 5317 * 5937 82 2 0 chrY 19612417 19613250 -31900334 - L1PA6 LINE L1 -3 6151 5317 4591 7 0 2 chrY 19613245 19613790 -31899794 - L1HS LINE L1 0 6155 5612 * 30440 122 40 12 chrY 19613792 19618969 -31894615 - L1PA6 LINE L1 -814 5332 11 997 255 63 16 chrY 19619013 19619440 -31894144 - L1PA15-16 LINE L1 -4717 1486 1040 638 319 48 8 chrY 19619521 19619897 -31893687 - L1PA15-16 LINE L1 -5271 932 571 388 356 44 54 chrY 19620300 19620615 -31892969 - L1M2 LINE L1 -5781 1068 757 302 301 21 21 chrY 19621416 19621509 -31892075 - L1M2 LINE L1 -6354 495 403 759 319 30 3 chrY 19621534 19621832 -31891752 - L1M2 LINE L1 -6534 315 10 3320 289 39 5 chrY 19621852 19622784 -31890800 - L1M2 LINE L1 -5105 1744 782 689 271 35 21 chrY 19623026 19623310 -31890274 - MER51B-int LTR ERV1 -3878 993 706 10899 200 34 35 chrY 19624264 19625011 -31888573 + L1MA2 LINE L1 985 1732 -5991 186 43 0 0 chrY 19625011 19625034 -31888550 + (CA)n Simple_repeat Simple_repeat 2 24 0 10899 200 34 35 chrY 19625034 19625103 -31888481 + L1MA2 LINE L1 1732 1800 -5923 255 31 0 0 chrY 19625103 19625135 -31888449 + (CA)n Simple_repeat Simple_repeat 2 33 0 10899 200 34 35 chrY 19625135 19625399 -31888185 + L1MA2 LINE L1 1800 2063 -5660 2112 134 0 16 chrY 19625399 19625712 -31887872 + AluSq SINE Alu 1 308 -5 10899 200 34 35 chrY 19625712 19626200 -31887384 + L1MA2 LINE L1 2063 2550 -5173 1817 165 0 10 chrY 19626200 19626491 -31887093 + AluSx SINE Alu 11 298 -14 10899 200 34 35 chrY 19626491 19630539 -31883045 + L1MA2 LINE L1 2550 6593 -1130 698 98 0 0 chrY 19630539 19630641 -31882943 + L1PA5 LINE L1 6051 6152 -2 10899 200 34 35 chrY 19630641 19631771 -31881813 + L1MA2 LINE L1 6593 7723 0 930 263 63 18 chrY 19631786 19632243 -31881341 + L1M4 LINE L1 4600 5077 -1069 * 5853 125 18 31 chrY 19632231 19634005 -31879579 + L1PA8 LINE L1 2882 4584 -1588 186 192 0 0 chrY 19634005 19634057 -31879527 + (TTAAA)n Simple_repeat Simple_repeat 4 55 0 5853 125 18 31 chrY 19634057 19635626 -31877958 + L1PA8 LINE L1 4584 6172 0 35 54 0 0 chrY 19635628 19635684 -31877900 + AT_rich Low_complexity Low_complexity 1 56 0 2164 169 4 12 chrY 19636105 19636662 -31876922 - MER51B-int LTR ERV1 -1674 5863 5247 319 171 44 0 chrY 19636659 19636734 -31876850 - MER51B-int LTR ERV1 -2043 5375 4947 * 1847 267 111 24 chrY 19636755 19637515 -31876069 + L1PBa LINE L1 6 831 -6032 12261 221 21 12 chrY 19637530 19638897 -31874687 + L1PBa LINE L1 1388 2742 -4120 226 48 0 48 chrY 19638897 19638939 -31874645 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 12261 221 21 12 chrY 19638939 19641871 -31871713 + L1PBa LINE L1 2742 5729 -1133 1687 159 40 65 chrY 19641888 19642106 -31871478 - MER51B-int LTR ERV1 -2767 3179 2972 2379 102 0 10 chrY 19642106 19642420 -31871164 - AluY SINE Alu 0 311 1 1687 159 40 65 chrY 19642420 19642572 -31871012 - MER51B-int LTR ERV1 -2974 2972 2818 1803 151 74 0 chrY 19642575 19642926 -31870658 - MER51B-int LTR ERV1 -4501 3315 2939 10886 98 3 1 chrY 19642926 19644477 -31869107 + L1PA6 LINE L1 2743 4296 -1850 6584 78 14 1 chrY 19644477 19645991 -31867593 + L1PA6 LINE L1 4629 6150 -4 6238 120 50 10 chrY 19646008 19646179 -31867405 - MER51B-int LTR ERV1 -4867 2949 2786 189 0 0 0 chrY 19646179 19646200 -31867384 + (TA)n Simple_repeat Simple_repeat 2 22 0 6238 120 50 10 chrY 19646200 19647138 -31866446 - MER51B-int LTR ERV1 -5030 2786 1795 456 151 34 101 chrY 19647143 19647262 -31866322 - MER4A LTR ERV1 -147 517 407 2114 130 38 3 chrY 19647264 19647633 -31865951 - MER51B-int LTR ERV1 -6342 1474 1093 2078 123 9 37 chrY 19647639 19647989 -31865595 - MER51B-int LTR ERV1 -7476 340 1 2368 123 49 22 chrY 19647989 19648356 -31865228 - MER51B LTR ERV1 0 377 1 375 219 55 0 chrY 19648560 19648633 -31864951 + AluJ/FLAM SINE Alu 1 77 -225 623 103 0 0 chrY 19648729 19648816 -31864768 - AluY SINE Alu -11 300 214 2224 100 31 3 chrY 19648972 19649292 -31864292 + L1PA7 LINE L1 5825 6153 -1 227 191 0 0 chrY 19649439 19649481 -31864103 + A-rich Low_complexity Low_complexity 2 43 0 776 230 11 16 chrY 19649667 19649858 -31863726 - MER20 DNA MER1_type -29 190 1 2137 110 10 3 chrY 19651101 19651392 -31862192 - AluSp SINE Alu -18 295 3 1497 214 3 7 chrY 19651394 19651693 -31861891 - MLT1B LTR MaLR -92 298 1 1260 254 7 0 chrY 19651833 19652117 -31861467 - AluJb SINE Alu -26 286 1 1429 202 7 7 chrY 19654062 19654334 -31859250 - AluSq SINE Alu -41 272 1 2108 121 0 0 chrY 19654339 19654707 -31858877 - AluSx SINE Alu 0 368 1 252 0 0 0 chrY 19655197 19655225 -31858359 + (A)n Simple_repeat Simple_repeat 1 28 0 805 264 14 27 chrY 19655436 19655656 -31857928 + MER58A DNA MER1_type 7 223 -1 655 244 81 14 chrY 19656634 19656917 -31856667 + MER33 DNA MER1_type 23 324 0 780 189 0 0 chrY 19657131 19657263 -31856321 + AluJo SINE Alu 2 133 -179 316 173 18 45 chrY 19657265 19657375 -31856209 + GA-rich Low_complexity Low_complexity 2 108 0 956 165 0 25 chrY 19657378 19657536 -31856048 + AluJo SINE Alu 136 289 -23 1995 268 57 2 chrY 19657793 19658320 -31855264 - MER68 LTR ERV1 -6 556 1 385 233 37 30 chrY 19659227 19659315 -31854269 + AluJ/FRAM SINE Alu 216 277 -25 1020 163 80 6 chrY 19659365 19659669 -31853915 - MSTA LTR MaLR 0 428 1 338 281 72 62 chrY 19659684 19659976 -31853608 + L1MEc LINE L1 1213 1507 -4889 2157 124 0 16 chrY 19660762 19661076 -31852508 - AluY SINE Alu -2 309 1 228 255 0 0 chrY 19662050 19662101 -31851483 + MER94 DNA DNA 2 52 -82 2048 142 3 3 chrY 19662711 19663021 -31850563 + AluSp SINE Alu 1 310 -3 505 185 74 89 chrY 19663030 19663165 -31850419 + FLAM_C SINE Alu 1 133 0 1064 218 50 40 chrY 19663174 19663472 -31850112 + AluJo SINE Alu 2 302 0 1846 151 32 0 chrY 19664538 19664816 -31848768 + AluSp SINE Alu 3 289 -24 255 103 0 0 chrY 19664840 19664879 -31848705 + (TG)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chrY 19664895 19664922 -31848662 + (GA)n Simple_repeat Simple_repeat 2 28 0 487 254 9 0 chrY 19664927 19665041 -31848543 - AluJb SINE Alu -196 116 2 1889 155 7 3 chrY 19665157 19665441 -31848143 + AluSc SINE Alu 1 285 -24 332 118 20 0 chrY 19665843 19665894 -31847690 - MER4A LTR ERV1 -350 314 263 614 152 0 10 chrY 19665894 19665993 -31847591 - MER4A LTR ERV1 -566 98 1 871 238 11 5 chrY 19666417 19666606 -31846978 + MER1B DNA MER1_type 37 226 -71 * 1428 134 75 55 chrY 19666598 19666902 -31846682 - HSMAR2 DNA Mariner -308 994 685 481 189 104 9 chrY 19666902 19667008 -31846576 + MER50 LTR ERV1 1 116 -618 * 2107 211 2 18 chrY 19667000 19667436 -31846148 + MER50 LTR ERV1 283 711 -23 950 230 18 26 chrY 19669642 19669868 -31843716 - MER58A DNA MER1_type 0 224 1 543 161 11 0 chrY 19670825 19670918 -31842666 - L1MB5 LINE L1 -8 6166 6073 894 116 8 0 chrY 19670954 19671075 -31842509 - AluJb SINE Alu -188 124 3 2301 203 92 31 chrY 19671082 19671425 -31842159 - L1MB5 LINE L1 -117 6057 5663 1659 196 3 0 chrY 19671425 19671716 -31841868 + AluJo SINE Alu 1 292 -20 2301 203 92 31 chrY 19671716 19671948 -31841636 - L1MB5 LINE L1 -511 5663 5447 1923 156 40 8 chrY 19672048 19672401 -31841183 + MLT1A1 LTR MaLR 2 365 0 587 164 18 9 chrY 19673001 19673111 -31840473 + L1MB7 LINE L1 5816 5926 -258 653 224 6 41 chrY 19673112 19673282 -31840302 + L1MB7 LINE L1 6006 6169 -15 3152 164 11 15 chrY 19673543 19674072 -31839512 + MER1A DNA MER1_type 1 527 0 1288 211 13 47 chrY 19674098 19674396 -31839188 - AluJo SINE Alu -18 294 7 1022 204 144 8 chrY 19674444 19674708 -31838876 + MLT1D LTR MaLR 1 300 -205 488 212 178 0 chrY 19674710 19674828 -31838756 + AluJb SINE Alu 135 273 -39 391 103 0 0 chrY 19674837 19674895 -31838689 - Alu SINE Alu 0 302 245 240 204 97 1 chrY 19675012 19675268 -31838316 + AluJo SINE Alu 6 310 0 330 181 111 14 chrY 19675273 19675345 -31838239 - MER58 DNA MER1_type -127 88 10 1824 147 13 7 chrY 19675448 19675747 -31837837 + AluSx SINE Alu 9 309 -3 1088 174 33 5 chrY 19676329 19676513 -31837071 - LTR8 LTR ERV1 0 691 503 3794 125 36 27 chrY 19676776 19677414 -31836170 - LTR9B LTR ERV1 0 644 1 1812 142 3 3 chrY 19677712 19678026 -31835558 + AluSg SINE Alu 1 310 0 592 202 6 40 chrY 19678035 19678208 -31835376 + AluJb SINE Alu 144 310 -2 778 171 0 65 chrY 19678240 19678410 -31835174 + L1MA10 LINE L1 6167 6325 -9 319 234 37 28 chrY 19678432 19678539 -31835045 - L1MB7 LINE L1 -24 6160 6053 284 250 0 11 chrY 19678542 19678630 -31834954 - L1MB7 LINE L1 -18 6166 6080 199 221 8 168 chrY 19680068 19680199 -31833385 - L2 LINE L2 -22 3291 3182 1602 151 34 24 chrY 19680371 19680663 -31832921 - AluSc SINE Alu -10 299 5 2057 150 7 0 chrY 19681651 19681957 -31831627 - AluSp SINE Alu -5 308 1 1621 181 105 27 chrY 19683075 19683484 -31830100 - MER67A LTR ERV1 -102 441 1 351 273 33 43 chrY 19684587 19684728 -31828856 + MIR SINE MIR 13 151 -69 1974 131 17 0 chrY 19685501 19685791 -31827793 - AluSg SINE Alu -15 295 1 22 35 0 0 chrY 19687721 19687750 -31825834 + AT_rich Low_complexity Low_complexity 1 29 0 1275 181 97 35 chrY 19687750 19688060 -31825524 - L1PB2 LINE L1 -9 6142 5814 261 289 0 11 chrY 19691914 19692004 -31821580 + T-rich Low_complexity Low_complexity 2 90 0 463 256 28 43 chrY 19693034 19693245 -31820339 + L1MC5 LINE L1 7705 7912 -49 3340 210 84 45 chrY 19693550 19694962 -31818622 - L1MB2 LINE L1 -2 5993 4528 240 35 0 0 chrY 19694962 19694991 -31818593 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 1411 207 0 25 chrY 19694991 19695271 -31818313 - AluJb SINE Alu -39 273 1 387 195 135 35 chrY 19695276 19695476 -31818108 - L1MB2 LINE L1 -2912 3058 2839 1769 220 177 72 chrY 19695477 19696334 -31817250 - L1MB2 LINE L1 -3750 2220 1454 4386 155 51 28 chrY 19696334 19697095 -31816489 + MER4E LTR ERV1 1 779 0 1769 220 177 72 chrY 19697095 19697334 -31816250 - L1MB2 LINE L1 -4516 1454 1242 2038 89 89 4 chrY 19697334 19697614 -31815970 - AluY SINE Alu -5 306 3 1769 220 177 72 chrY 19697614 19698094 -31815490 - L1MB2 LINE L1 -4728 1242 494 387 271 0 21 chrY 19698107 19698203 -31815381 - L1M3d LINE L1 -5117 774 681 1666 174 16 7 chrY 19698340 19698644 -31814940 - AluSx SINE Alu -1 311 5 404 306 34 83 chrY 19698682 19699090 -31814494 - L1MB2 LINE L1 -5499 392 5 384 283 108 54 chrY 19699309 19699623 -31813961 - L1MEd LINE L1 -4869 1250 920 183 80 0 0 chrY 19699683 19699708 -31813876 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1695 157 53 0 chrY 19699858 19700139 -31813445 - AluSx SINE Alu -16 296 1 643 241 104 55 chrY 19704454 19704828 -31808756 - MLT1E2 LTR MaLR -160 466 23 1311 189 25 66 chrY 19704968 19705254 -31808330 + AluJo SINE Alu 9 282 -30 1597 159 59 24 chrY 19705637 19705927 -31807657 - AluSx SINE Alu -12 300 1 582 207 172 10 chrY 19707284 19707496 -31806088 - MLT1C LTR MaLR 0 467 198 640 278 28 48 chrY 19707499 19707747 -31805837 - Charlie1a DNA MER1_type -1175 280 38 306 304 9 18 chrY 19707999 19708111 -31805473 + L1ME2 LINE L1 5789 5899 -263 487 270 123 34 chrY 19708115 19708408 -31805176 + L1ME3 LINE L1 5843 6161 -1 285 186 137 69 chrY 19708468 19708570 -31805014 + L1ME2 LINE L1 5990 6098 -66 4733 195 47 39 chrY 19709079 19710924 -31802660 - L1MA8 LINE L1 -2 6289 4460 2104 142 7 0 chrY 19710924 19711227 -31802357 - AluSx SINE Alu -7 305 1 4733 195 47 39 chrY 19711227 19711239 -31802345 - L1MA8 LINE L1 -1831 4460 4450 2032 133 10 3 chrY 19711239 19711539 -31802045 - AluY SINE Alu -9 302 1 4733 195 47 39 chrY 19711539 19711677 -31801907 - L1MA8 LINE L1 -1841 4450 4315 1480 178 35 24 chrY 19711677 19711964 -31801620 - AluSx SINE Alu -1 311 22 1277 199 28 98 chrY 19711964 19712138 -31801446 - AluJb SINE Alu -7 295 151 2066 141 0 3 chrY 19712138 19712442 -31801142 - AluSg SINE Alu -7 303 1 1277 199 28 98 chrY 19712442 19712584 -31801000 - AluJb SINE Alu -151 151 1 4733 195 47 39 chrY 19712584 19712724 -31800860 - L1MA8 LINE L1 -1975 4316 4142 496 234 143 45 chrY 19712732 19713110 -31800474 - LTR15 LTR ERV1 -11 530 177 233 250 15 0 chrY 19713160 19713228 -31800356 + (TTA)n Simple_repeat Simple_repeat 2 70 0 567 294 24 14 chrY 19713247 19713458 -31800126 - HERV15 LTR ERV1 -2 8733 8521 20779 273 31 30 chrY 19713482 19715454 -31798130 - HERV15 LTR ERV1 -2125 6301 4334 243 79 0 0 chrY 19715454 19715492 -31798092 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 10022 63 4 2 chrY 19715502 19717542 -31796042 - L1PA5 LINE L1 -1 6153 4142 20779 273 31 30 chrY 19717542 19721468 -31792116 - HERV15 LTR ERV1 -4100 4326 383 1072 262 46 31 chrY 19721621 19721972 -31791612 - HERV15 LTR ERV1 -8052 374 19 1323 241 78 81 chrY 19722101 19723054 -31790530 - L1MDa LINE L1 -3040 3500 2550 2162 108 0 46 chrY 19723054 19723377 -31790207 - AluY SINE Alu -3 308 1 1323 241 78 81 chrY 19723377 19723780 -31789804 - L1MDa LINE L1 -3990 2550 2147 1232 287 121 8 chrY 19723772 19724277 -31789307 - L1MDa LINE L1 -5201 1339 778 * 246 313 0 0 chrY 19724257 19724324 -31789260 - L1MDa LINE L1 -5970 570 504 * 2764 204 24 4 chrY 19724332 19724831 -31788753 + LTR22 LTR ERVK 1 509 0 1854 128 25 3 chrY 19724831 19725113 -31788471 + HERVK22 LTR ERVK 1 288 -6549 19388 108 14 4 chrY 19725117 19728848 -31784736 + HERVK22 LTR ERVK 3003 6837 0 2331 194 62 42 chrY 19728848 19729014 -31784570 + LTR22 LTR ERVK 1 162 -347 1597 153 16 0 chrY 19729014 19729262 -31784322 + AluSc SINE Alu 42 293 -16 2331 194 62 42 chrY 19729262 19729594 -31783990 + LTR22 LTR ERVK 162 509 0 529 287 132 8 chrY 19729599 19729678 -31783906 - L1MDa LINE L1 -6044 496 428 180 77 0 0 chrY 19729678 19729704 -31783880 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 529 287 132 8 chrY 19729704 19729875 -31783709 - L1MDa LINE L1 -6112 428 215 1508 185 40 33 chrY 19729907 19730210 -31783374 + AluSx SINE Alu 5 309 -3 237 139 0 0 chrY 19730550 19730593 -31782991 + (TG)n Simple_repeat Simple_repeat 2 44 0 1063 244 61 58 chrY 19730704 19731048 -31782536 + MSTD LTR MaLR 1 348 -48 2473 55 7 3 chrY 19731048 19731355 -31782229 + AluY SINE Alu 1 308 -3 1063 244 61 58 chrY 19731355 19731404 -31782180 + MSTD LTR MaLR 348 395 -1 8003 28 8 0 chrY 19732549 19733857 -31779727 + L1PA3 LINE L1 4836 6150 -5 33 0 0 0 chrY 19733857 19733890 -31779694 + AT_rich Low_complexity Low_complexity 1 33 0 41 72 0 0 chrY 19734073 19734156 -31779428 + AT_rich Low_complexity Low_complexity 1 83 0 21 0 0 0 chrY 19734913 19734934 -31778650 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chrY 19735162 19735186 -31778398 + (A)n Simple_repeat Simple_repeat 1 24 0 26 64 0 0 chrY 19735267 19735314 -31778270 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chrY 19735797 19735827 -31777757 + AT_rich Low_complexity Low_complexity 1 30 0 262 326 28 46 chrY 19735974 19736192 -31777392 + L1PA12 LINE L1 7 220 -7361 292 202 135 11 chrY 19736411 19736500 -31777084 + MER50 LTR ERV1 3 102 -632 453 301 6 0 chrY 19736613 19736769 -31776815 + MER50 LTR ERV1 234 390 -344 1050 201 71 65 chrY 19738490 19738573 -31775011 + L1PA12 LINE L1 2319 2400 -5174 432 51 0 0 chrY 19738573 19738632 -31774952 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1050 201 71 65 chrY 19738632 19738871 -31774713 + L1PA12 LINE L1 2400 2643 -4931 * 4338 250 32 21 chrY 19738868 19740456 -31773128 + L1P LINE L1 2718 4323 -1823 3633 196 68 21 chrY 19740473 19741380 -31772204 + L1P LINE L1 13 962 -5184 9385 178 12 21 chrY 19741418 19743297 -31770287 + L1PA15 LINE L1 11 1871 -4275 7007 59 2 0 chrY 19743319 19744595 -31768989 - L1PA4 LINE L1 -3 6152 4879 4261 78 21 0 chrY 19744595 19745219 -31768365 - L1PA4 LINE L1 -4444 1702 1066 * 34455 57 31 2 chrY 19745214 19749949 -31763635 - L1P LINE L1 -1269 4877 4 3775 170 63 56 chrY 19749949 19750085 -31763499 + L1PA15 LINE L1 4952 5086 -1079 2493 21 3 0 chrY 19750085 19750418 -31763166 + L1PA3 LINE L1 5850 6183 0 3775 170 63 56 chrY 19750418 19750694 -31762890 + L1PA15 LINE L1 5086 5358 -807 2637 30 0 0 chrY 19750694 19750993 -31762591 - AluY SINE Alu -12 299 1 3775 170 63 56 chrY 19750993 19751078 -31762506 + L1PA15 LINE L1 5358 5441 -724 2009 132 10 0 chrY 19751078 19751374 -31762210 - AluSp SINE Alu -14 299 1 3775 170 63 56 chrY 19751374 19751539 -31762045 + L1PA15 LINE L1 5441 5603 -562 2378 79 0 0 chrY 19751539 19751842 -31761742 + AluY SINE Alu 1 303 -8 3775 170 63 56 chrY 19751842 19751911 -31761673 + L1PA15 LINE L1 5603 5670 -495 197 33 33 0 chrY 19751911 19751941 -31761643 + (CA)n Simple_repeat Simple_repeat 2 32 0 3775 170 63 56 chrY 19751941 19752017 -31761567 + L1PA15 LINE L1 5670 5744 -421 2251 100 0 3 chrY 19752017 19752326 -31761258 - AluY SINE Alu -3 308 1 3775 170 63 56 chrY 19752326 19752720 -31760864 + L1PA15 LINE L1 5744 6163 -2 634 197 65 37 chrY 19754015 19754216 -31759368 - L1PB4 LINE L1 -180 5976 5774 542 271 0 0 chrY 19754228 19754368 -31759216 + L1PB4 LINE L1 6017 6156 0 1924 164 7 0 chrY 19754425 19754717 -31758867 + AluSg SINE Alu 1 294 -16 21 0 0 0 chrY 19754736 19754757 -31758827 + AT_rich Low_complexity Low_complexity 1 21 0 4228 203 22 25 chrY 19755360 19756781 -31756803 - L1PA13 LINE L1 -4 6159 4552 2094 125 10 0 chrY 19756781 19757076 -31756508 + AluSg SINE Alu 1 298 -12 4228 203 22 25 chrY 19757076 19757526 -31756058 - L1PA13 LINE L1 -1611 4552 4102 510 250 21 27 chrY 19757527 19757715 -31755869 - L1 LINE L1 -2545 3601 3415 1673 143 3 23 chrY 19757717 19758024 -31755560 + L1PB1 LINE L1 5491 5791 -360 366 147 0 0 chrY 19758024 19758092 -31755492 + (TA)n Simple_repeat Simple_repeat 1 68 0 1697 180 34 11 chrY 19758103 19758458 -31755126 + L1PB1 LINE L1 5789 6151 0 2620 219 57 48 chrY 19758562 19758698 -31754886 + L1MA7 LINE L1 5354 5487 -804 1743 180 7 0 chrY 19758698 19758976 -31754608 + AluSx SINE Alu 1 280 -32 207 0 0 0 chrY 19758980 19759003 -31754581 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2620 219 57 48 chrY 19759003 19759781 -31753803 + L1MA7 LINE L1 5489 6281 -10 25 51 0 0 chrY 19759783 19759822 -31753762 + AT_rich Low_complexity Low_complexity 1 39 0 2154 196 16 4 chrY 19760217 19760670 -31752914 - L1MA4A LINE L1 -5 7000 6543 7753 258 40 22 chrY 19760671 19763894 -31749690 - L1MA4A LINE L1 -554 6451 3138 318 50 0 0 chrY 19763894 19763934 -31749650 + (TA)n Simple_repeat Simple_repeat 2 41 0 7753 258 40 22 chrY 19763934 19765016 -31748568 - L1MA4A LINE L1 -3867 3138 2077 6598 78 31 0 chrY 19765018 19766051 -31747533 - L1PA7 LINE L1 -1 6153 5108 26902 149 27 19 chrY 19766643 19769423 -31744161 - L1PA7 LINE L1 -1011 5135 2294 219 88 0 0 chrY 19769423 19769457 -31744127 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 26902 149 27 19 chrY 19769457 19771759 -31741825 - L1PA7 LINE L1 -3852 2294 12 1771 278 178 58 chrY 19771764 19771988 -31741596 - L1MA4A LINE L1 -4782 2067 1871 2655 64 3 0 chrY 19771988 19772330 -31741254 - L1PA4 LINE L1 -6 6149 5807 1771 278 178 58 chrY 19772330 19773316 -31740268 - L1MA4A LINE L1 -4978 1871 711 748 343 95 5 chrY 19773455 19773843 -31739741 - L1MA4A LINE L1 -6373 476 54 1822 228 81 12 chrY 19773886 19774654 -31738930 - L1 LINE L1 -2243 4107 3287 37027 64 5 48 chrY 19774691 19781119 -31732465 - L1PA4 LINE L1 -8 6147 4 430 283 95 54 chrY 19782314 19782629 -31730955 - L1 LINE L1 -5952 329 2 404 228 55 21 chrY 19783795 19783940 -31729644 + L1 LINE L1 3391 3540 -2606 354 254 51 28 chrY 19783940 19784157 -31729427 + L1 LINE L1 4415 4636 -1510 944 305 36 35 chrY 19785480 19786110 -31727474 + L1 LINE L1 4663 5293 -853 293 250 42 10 chrY 19786186 19786282 -31727302 + L1M LINE L1 5321 5419 -881 198 0 0 0 chrY 19786282 19786304 -31727280 + (A)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chrY 19787249 19787275 -31726309 + AT_rich Low_complexity Low_complexity 1 26 0 385 212 175 0 chrY 19787275 19787412 -31726172 - L1MD2 LINE L1 0 6359 6199 340 290 76 15 chrY 19787416 19787547 -31726037 - L1MD2 LINE L1 -216 6143 6005 12315 59 12 1 chrY 19787567 19789938 -31723646 - L1PA4 LINE L1 0 6155 3767 8693 110 8 0 chrY 19789938 19791229 -31722355 - L1PA4 LINE L1 -4843 1303 3 240 59 0 0 chrY 19791377 19791411 -31722173 + (TG)n Simple_repeat Simple_repeat 2 35 0 2116 266 27 30 chrY 19793164 19793907 -31719677 - L1MC1 LINE L1 0 6333 5593 940 235 14 111 chrY 19794019 19794432 -31719152 - MER93b LTR ERV1 0 373 1 29 0 0 0 chrY 19794473 19794502 -31719082 + AT_rich Low_complexity Low_complexity 1 29 0 2312 100 0 0 chrY 19794502 19794803 -31718781 - AluY SINE Alu -10 301 1 22 0 0 0 chrY 19794954 19794976 -31718608 + AT_rich Low_complexity Low_complexity 1 22 0 2719 7 0 0 chrY 19795339 19795635 -31717949 - AluYa5 SINE Alu -15 296 1 1197 185 77 24 chrY 19796594 19796891 -31716693 - THE1C LTR MaLR -5 370 58 5854 86 36 18 chrY 19796909 19797458 -31716126 + L1PA8 LINE L1 5254 5827 -345 2112 117 7 3 chrY 19797458 19797748 -31715836 + AluSp SINE Alu 17 307 -6 5854 86 36 18 chrY 19797748 19798092 -31715492 + L1PA8 LINE L1 5827 6163 -9 675 164 0 9 chrY 19798283 19798399 -31715185 - AluSp/q SINE Alu -10 303 189 713 274 60 28 chrY 19798406 19798724 -31714860 - L1M4 LINE L1 -1782 4364 4037 769 124 130 41 chrY 19798726 19798895 -31714689 - MER4E LTR ERV1 -11 755 572 2826 39 14 0 chrY 19798895 19799255 -31714329 - L1P LINE L1 -1845 4301 3937 7573 29 2 0 chrY 19799255 19800335 -31713249 + L1PA3 LINE L1 5074 6155 0 2949 171 39 22 chrY 19800336 19800925 -31712659 - MER4E LTR ERV1 -180 599 1 6596 174 65 19 chrY 19801802 19801965 -31711619 - MER4E-int LTR ERV1 -113 6645 6491 1693 184 13 3 chrY 19801965 19802274 -31711310 + AluSx SINE Alu 1 312 0 6596 174 65 19 chrY 19802274 19804015 -31709569 - MER4E-int LTR ERV1 -267 6491 4603 2035 166 17 0 chrY 19804015 19804359 -31709225 + THE1A LTR MaLR 3 352 -3 6596 174 65 19 chrY 19804359 19804523 -31709061 - MER4E-int LTR ERV1 -2155 4603 4448 2587 201 37 53 chrY 19804518 19805082 -31708502 - MER4E-int LTR ERV1 -2670 4088 3534 * 1746 195 3 0 chrY 19805082 19805389 -31708195 - AluSc SINE Alu -1 308 1 2587 201 37 53 chrY 19805389 19805470 -31708114 - MER4E-int LTR ERV1 -3224 3534 3453 3874 157 98 42 chrY 19805526 19806233 -31707351 - MER4E-int LTR ERV1 -3758 3000 2205 1922 167 6 10 chrY 19806233 19806545 -31707039 + AluSq SINE Alu 1 311 -2 3874 157 98 42 chrY 19806545 19806968 -31706616 - MER4E-int LTR ERV1 -4553 2205 1807 1691 190 13 3 chrY 19806997 19807307 -31706277 + AluSq SINE Alu 1 313 0 3196 186 22 10 chrY 19807309 19807942 -31705642 + LTR9B LTR ERV1 7 644 0 1502 247 13 42 chrY 19807942 19808392 -31705192 + HUERS-P3b LTR ERV1 2 438 -6980 2943 102 27 18 chrY 19808392 19810092 -31703492 + L1PA6 LINE L1 3152 4984 -1162 2696 78 0 0 chrY 19810091 19810462 -31703122 + L1PA6 LINE L1 5413 5783 -371 * 1461 128 13 0 chrY 19810463 19810690 -31702894 + L1PA6 LINE L1 5907 6136 -18 386 98 98 0 chrY 19810701 19810942 -31702642 + (TA)n Simple_repeat Simple_repeat 1 264 0 260 170 19 0 chrY 19810945 19810998 -31702586 + HUERS-P3b LTR ERV1 451 504 -6914 1487 64 14 0 chrY 19811159 19811379 -31702205 - L1PA4 LINE L1 -2684 3462 3240 9407 60 6 1 chrY 19811380 19812657 -31700927 + L1PA4 LINE L1 3458 4740 -1406 6891 59 9 0 chrY 19812659 19813755 -31699829 + L1PA4 LINE L1 5050 6153 -2 784 250 58 0 chrY 19813771 19813979 -31699605 + HUERS-P3b LTR ERV1 878 1097 -7822 1905 173 3 0 chrY 19813979 19814280 -31699304 - AluSq SINE Alu -11 302 1 595 181 79 0 chrY 19814299 19814426 -31699158 + HUERS-P3b LTR ERV1 2506 2642 -4776 1840 230 30 5 chrY 19814426 19814856 -31698728 - LTR8 LTR ERV1 -250 441 1 10822 143 32 20 chrY 19814856 19818399 -31695185 + HUERS-P3b LTR ERV1 1275 6780 -638 2033 188 10 15 chrY 19818395 19818793 -31694791 + HUERS-P3 LTR ERV1 8503 8898 -21 * 3036 166 20 5 chrY 19818812 19819373 -31694211 + LTR9B LTR ERV1 1 569 -75 253 119 24 0 chrY 19819373 19819415 -31694169 + L1PA7 LINE L1 6046 6088 -66 2281 139 62 23 chrY 19819415 19819848 -31693736 + LTR7 LTR ERV1 1 450 0 1498 212 101 21 chrY 19819848 19820273 -31693311 + HERVH LTR ERV1 1 459 -7254 7118 235 22 36 chrY 19820331 19822996 -31690588 + HERVH LTR ERV1 590 3082 -3537 416 81 16 0 chrY 19822992 19823054 -31690530 + HERVH LTR ERV1 3933 3995 -3718 * 1476 171 6 5 chrY 19823082 19823372 -31690212 + HERVH LTR ERV1 3953 4249 -2749 2000 139 9 0 chrY 19823396 19823734 -31689850 + HERVH LTR ERV1 5522 5862 -1851 * 2725 118 54 0 chrY 19823730 19824138 -31689446 + LTR17 LTR ERV1 351 780 0 2405 132 111 32 chrY 19824139 19824732 -31688852 - MER4-int LTR ERV1 -4195 2403 1764 378 0 0 0 chrY 19824744 19824786 -31688798 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1693 107 113 6 chrY 19825852 19826204 -31687380 - LTR7 LTR ERV1 0 450 1 2130 145 38 12 chrY 19826204 19826624 -31686960 - HERVH LTR ERV1 0 7713 7283 5694 137 2 1 chrY 19826632 19827562 -31686022 - HERVH LTR ERV1 -2699 5014 4084 1621 141 95 10 chrY 19827575 19827941 -31685643 - LTR7 LTR ERV1 0 450 1 1860 155 8 14 chrY 19827941 19828295 -31685289 + HERVH LTR ERV1 7362 7713 0 1769 141 67 8 chrY 19828295 19828663 -31684921 + LTR7 LTR ERV1 1 450 0 188 233 0 23 chrY 19828941 19828984 -31684600 + MIR SINE MIR 189 230 -32 4596 205 79 18 chrY 19830557 19831683 -31681901 - MER4E-int LTR ERV1 -5563 1195 1 3235 184 35 46 chrY 19831688 19832470 -31681114 - MER4E LTR ERV1 -5 774 2 481 235 82 26 chrY 19832482 19832750 -31680834 - L1M4 LINE L1 -2108 4038 3756 714 232 11 0 chrY 19832802 19832979 -31680605 + MER41C LTR ERV1 376 554 0 4666 173 51 16 chrY 19833140 19833340 -31680244 + MER41C-int LTR ERV1 3 195 -7561 1674 174 4 4 chrY 19833340 19833616 -31679968 + AluSc SINE Alu 1 276 -33 309 68 0 0 chrY 19833618 19833662 -31679922 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4666 173 51 16 chrY 19833662 19834435 -31679149 + MER41C-int LTR ERV1 195 1013 -6743 9446 165 47 6 chrY 19834436 19836202 -31677382 + MER41C-int LTR ERV1 1118 2956 -4800 1018 185 5 5 chrY 19836188 19836388 -31677196 + MER41C-int LTR ERV1 4244 4443 -3313 * 1039 117 6 0 chrY 19836379 19836541 -31677043 + MER41C-int LTR ERV1 5151 5313 -2443 827 203 5 16 chrY 19836540 19836727 -31676857 + MER41C-int LTR ERV1 5461 5645 -2111 * 2697 183 4 2 chrY 19836716 19837220 -31676364 + MER41C-int LTR ERV1 6084 6588 -1168 17913 49 1 2 chrY 19837235 19840272 -31673312 - L1PA2 LINE L1 0 6155 3121 6973 128 8 33 chrY 19840283 19840874 -31672710 + MER41C-int LTR ERV1 6583 7130 -626 1607 178 17 24 chrY 19840874 19841166 -31672418 - AluSx SINE Alu -22 290 1 6973 128 8 33 chrY 19841166 19841772 -31671812 + MER41C-int LTR ERV1 7130 7750 -6 2484 174 82 12 chrY 19841779 19842292 -31671292 + MER41C LTR ERV1 3 551 -3 507 240 0 0 chrY 19842746 19842842 -31670742 - Alu SINE Alu -15 295 200 9461 69 5 10 chrY 19842844 19848940 -31664644 - L1PA4 LINE L1 0 6155 1 653 264 32 28 chrY 19848956 19849240 -31664344 - L1M4 LINE L1 -4900 1642 1358 859 242 79 0 chrY 19849396 19849636 -31663948 + AluJo SINE Alu 54 312 0 468 279 67 7 chrY 19849787 19850056 -31663528 + L1M4c LINE L1 2151 2435 -3949 937 289 79 24 chrY 19850142 19850761 -31662823 + L1M4c LINE L1 2645 3297 -3085 3860 243 63 23 chrY 19850925 19852408 -31661176 + L1M3f LINE L1 85 1624 -4065 31521 118 25 7 chrY 19852415 19858448 -31655136 + L1PA6 LINE L1 11 6154 0 869 220 61 100 chrY 19858454 19858732 -31654852 + L1M3f LINE L1 1677 1964 -4364 1342 153 61 95 chrY 19858732 19859027 -31654557 + AluSx SINE Alu 1 285 -27 869 220 61 100 chrY 19859027 19859076 -31654508 + L1M3f LINE L1 1964 2013 -4315 1593 220 3 0 chrY 19859076 19859371 -31654213 + AluSx SINE Alu 1 296 -16 869 220 61 100 chrY 19859371 19859581 -31654003 + L1M3f LINE L1 2013 2187 -4141 2308 103 3 3 chrY 19859581 19859892 -31653692 + AluY SINE Alu 1 311 0 869 220 61 100 chrY 19859892 19860020 -31653564 + L1M3f LINE L1 2187 2318 -4010 1531 250 88 24 chrY 19860043 19860716 -31652868 + L1M3f LINE L1 2310 3025 -3303 38380 73 4 0 chrY 19860732 19866864 -31646720 - L1PA4 LINE L1 0 6155 3 297 243 35 22 chrY 19866884 19867048 -31646536 - L1MA8 LINE L1 -82 6209 6044 39315 48 22 2 chrY 19867065 19873095 -31640489 - L1PA2 LINE L1 -2 6153 1 10078 197 39 4 chrY 19873103 19875060 -31638524 - HUERS-P3 LTR ERV1 -5280 3639 1606 396 0 0 0 chrY 19875060 19875104 -31638480 + (TA)n Simple_repeat Simple_repeat 2 45 0 10078 197 39 4 chrY 19875104 19875177 -31638407 - HUERS-P3 LTR ERV1 -7313 1606 1537 1012 191 26 0 chrY 19875265 19875454 -31638130 - HUERS-P3 LTR ERV1 -5702 3217 3024 2854 236 47 20 chrY 19875471 19876605 -31636979 - HUERS-P3 LTR ERV1 -7492 1427 219 531 308 65 44 chrY 19876673 19876830 -31636754 - LTR19C LTR ERV1 -32 747 595 2151 127 0 3 chrY 19876830 19877138 -31636446 - AluY SINE Alu -4 307 1 531 308 65 44 chrY 19877138 19877318 -31636266 - LTR19C LTR ERV1 -184 595 403 280 356 45 15 chrY 19878222 19878354 -31635230 - L2 LINE L2 -191 3081 2946 257 355 32 24 chrY 19878406 19878530 -31635054 - L2 LINE L2 -473 2841 2717 524 314 154 24 chrY 19878541 19878878 -31634706 - L1ME LINE L1 -434 5687 5307 367 332 139 5 chrY 19879474 19879676 -31633908 - L1MC/D LINE L1 -2239 5569 5341 30 0 0 0 chrY 19880144 19880174 -31633410 + AT_rich Low_complexity Low_complexity 1 30 0 594 186 75 43 chrY 19880386 19880547 -31633037 - Tigger7 DNA MER2_type -19 2468 2303 279 152 0 0 chrY 19880891 19880937 -31632647 - MER41B LTR ERV1 0 635 590 1280 190 76 27 chrY 19880937 19881200 -31632384 - AluSx SINE Alu -36 276 1 2385 151 2 2 chrY 19881200 19881611 -31631973 - MER41A LTR ERV1 -93 461 51 7228 12 0 0 chrY 19881623 19882480 -31631104 - L1HS LINE L1 0 6155 5299 329 154 0 0 chrY 19882480 19882545 -31631039 - MER41A LTR ERV1 -489 65 1 3499 180 21 28 chrY 19883517 19884274 -31629310 - MER4E LTR ERV1 -10 769 18 564 238 48 57 chrY 19884305 19884532 -31629052 - MER61E LTR ERV1 -4 565 341 318 260 19 10 chrY 19884702 19884806 -31628778 - LTR25 LTR ERV1 -441 353 249 689 240 10 26 chrY 19885834 19886388 -31627196 + BSR/Beta Satellite Satellite 1 544 -43 334 242 14 135 chrY 19886408 19886623 -31626961 + BSR/Beta Satellite Satellite 69 257 -122 13037 173 23 13 chrY 19886623 19890047 -31623537 + L1PA8 LINE L1 1631 5094 -1052 2073 200 85 15 chrY 19890047 19890507 -31623077 + LTR22B LTR ERVK 1 492 0 42283 159 12 7 chrY 19890509 19897310 -31616274 + HERVK22 LTR ERVK 3 6837 0 2110 186 100 26 chrY 19897310 19897768 -31615816 + LTR22B LTR ERVK 1 492 0 5962 134 12 2 chrY 19897775 19898833 -31614751 + L1PA8 LINE L1 5096 6162 -10 2231 320 7 15 chrY 19898848 19899014 -31614570 - HUERS-P3 LTR ERV1 -613 8306 8140 5305 161 28 17 chrY 19899014 19899972 -31613612 - LTR5 LTR ERVK 0 969 1 2231 320 7 15 chrY 19899972 19900558 -31613026 - HUERS-P3 LTR ERV1 -779 8140 7560 7305 260 39 24 chrY 19900569 19902030 -31611554 - HUERS-P3 LTR ERV1 -1842 7077 5580 1564 230 7 13 chrY 19902030 19902334 -31611250 - AluSx SINE Alu 0 302 1 7305 260 39 24 chrY 19902334 19902804 -31610780 - HUERS-P3 LTR ERV1 -3339 5580 5118 18706 192 54 11 chrY 19902806 19907016 -31606568 - L1PA8 LINE L1 0 6487 1870 189 74 0 0 chrY 19907016 19907043 -31606541 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 18706 192 54 11 chrY 19907043 19908998 -31604586 - L1PA8 LINE L1 -4617 1870 2 4500 283 14 4 chrY 19908998 19910056 -31603528 - HUERS-P3 LTR ERV1 -1976 5115 4047 581 290 42 17 chrY 19910073 19911201 -31602383 + BSR/Beta Satellite Satellite 1 1157 -23 810 288 67 30 chrY 19911413 19912251 -31601333 + BSR/Beta Satellite Satellite 1 869 -30 * 2888 139 20 26 chrY 19912242 19912739 -31600845 + LTR15 LTR ERV1 1 595 0 7000 192 52 26 chrY 19912739 19914372 -31599212 + HERV15 LTR ERV1 1 1398 -7028 2962 253 15 13 chrY 19914353 19915491 -31598093 + HERV15 LTR ERV1 1704 4082 -4344 * 17986 206 8 15 chrY 19915535 19919015 -31594569 + HERV15 LTR ERV1 4520 7973 -762 492 260 8 47 chrY 19919015 19919287 -31594297 + BSR/Beta Satellite Satellite 1 261 -10 4139 171 90 20 chrY 19919305 19920047 -31593537 - LTR25 LTR ERV1 0 794 1 528 251 16 51 chrY 19920085 19920509 -31593075 + BSR/Beta Satellite Satellite 1 409 -7 550 277 26 8 chrY 19920521 19920996 -31592588 + BSR/Beta Satellite Satellite 1 483 -12 263 378 22 11 chrY 19921092 19921265 -31592319 + BSR/Beta Satellite Satellite 1 174 -2 1383 266 42 16 chrY 19921317 19922105 -31591479 + BSR/Beta Satellite Satellite 1 808 -6 1124 256 32 40 chrY 19922117 19923433 -31590151 + BSR/Beta Satellite Satellite 1 1305 -60 542 253 39 27 chrY 19923479 19923905 -31589679 + BSR/Beta Satellite Satellite 1 430 0 1370 278 30 37 chrY 19923963 19925617 -31587967 + BSR/Beta Satellite Satellite 1 1660 -469 195 42 0 0 chrY 19925617 19925641 -31587943 + (TG)n Simple_repeat Simple_repeat 1 24 0 1370 278 30 37 chrY 19925641 19926062 -31587522 + BSR/Beta Satellite Satellite 1660 2083 -46 1130 275 32 21 chrY 19926144 19927518 -31586066 + BSR/Beta Satellite Satellite 1 1388 -42 608 265 16 45 chrY 19927541 19928421 -31585163 + BSR/Beta Satellite Satellite 1 853 -29 671 247 8 17 chrY 19928454 19928783 -31584801 + BSR/Beta Satellite Satellite 1 326 -46 244 237 0 0 chrY 19928785 19928844 -31584740 + T-rich Low_complexity Low_complexity 1 59 0 41855 52 22 1 chrY 19928848 19934869 -31578715 - L1PA2 LINE L1 -3 6152 3 4819 178 95 24 chrY 19934880 19934993 -31578591 - MER52A-int LTR ERV1 -2949 4588 4484 1890 146 0 7 chrY 19934993 19935296 -31578288 - AluSx SINE Alu 0 312 19 4819 178 95 24 chrY 19935296 19936323 -31577261 - MER52A-int LTR ERV1 -3053 4484 3367 313 129 29 114 chrY 19936316 19936386 -31577198 - MER52A-int LTR ERV1 -2937 4059 1238 * 514 231 0 9 chrY 19936385 19936493 -31577091 + MER52-int LTR ERV1 980 1086 -6005 737 219 40 30 chrY 19936541 19936742 -31576842 - LTR4 LTR ERV1 -41 555 353 316 118 82 82 chrY 19936798 19936883 -31576701 - MER52A-int LTR ERV1 -6313 778 694 3834 156 10 2 chrY 19936885 19937462 -31576122 - MER52A-int LTR ERV1 -4812 2279 1698 426 59 0 0 chrY 19937485 19937536 -31576048 - MER52A-int LTR ERV1 -5335 1756 1706 2083 225 47 60 chrY 19937657 19937776 -31575808 - MER52A-int LTR ERV1 -6520 571 452 943 39 16 0 chrY 19937776 19937904 -31575680 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 2083 225 47 60 chrY 19937904 19938354 -31575230 - MER52A-int LTR ERV1 -6639 452 9 5135 251 111 51 chrY 19938354 19939932 -31573652 - MER52A LTR ERV1 0 1755 1 622 261 7 45 chrY 19939932 19940446 -31573138 + BSR/Beta Satellite Satellite 1 494 0 600 250 32 21 chrY 19940474 19941269 -31572315 + BSR/Beta Satellite Satellite 1 804 -34 233 363 29 0 chrY 19941312 19941414 -31572170 + BSR/Beta Satellite Satellite 45 149 -3 1182 240 37 93 chrY 19941568 19941730 -31571854 + BSR/Beta Satellite Satellite 1 171 -1196 2080 153 0 3 chrY 19941730 19942037 -31571547 + AluSq SINE Alu 1 306 -7 1182 240 37 93 chrY 19942037 19942371 -31571213 + BSR/Beta Satellite Satellite 171 522 -845 1738 158 0 88 chrY 19942371 19942712 -31570872 + AluSq SINE Alu 1 311 -2 1182 240 37 93 chrY 19942712 19942816 -31570768 + BSR/Beta Satellite Satellite 522 1177 -190 429 81 0 48 chrY 19942914 19942976 -31570608 - HERVK3 LTR ERVK -2505 4738 4680 2410 109 0 0 chrY 19942979 19943309 -31570275 - HERVK3 LTR ERVK -2949 4294 3965 741 228 7 7 chrY 19943298 19943447 -31570137 - HERVK3 LTR ERVK -3559 3684 3536 * 3903 131 3 0 chrY 19943446 19944019 -31569565 - HERVK3 LTR ERVK -4582 2661 2087 3348 157 26 12 chrY 19944019 19944624 -31568960 - LTR6A LTR ERV1 0 564 1 2956 191 41 0 chrY 19944624 19945189 -31568395 - HERVK3 LTR ERVK -5153 2090 1503 2547 95 127 231 chrY 19945196 19945965 -31567619 - LTR12 LTR ERV1 -25 689 1 5599 111 0 4 chrY 19945965 19946742 -31566842 - HERV9 LTR ERV1 0 8399 7626 2350 191 115 60 chrY 19946740 19947594 -31565990 - Harlequin LTR ERV1 -5156 1740 840 * 5664 131 16 18 chrY 19947587 19948464 -31565120 - Harlequin LTR ERV1 -3445 4954 4080 21055 125 22 8 chrY 19948471 19951669 -31561915 - Harlequin LTR ERV1 -259 455 1 232 263 0 13 chrY 19951669 19951745 -31561839 - LTR30 LTR ERV1 -98 624 550 1505 118 109 0 chrY 19951745 19951983 -31561601 - LTR12 LTR ERV1 -450 264 1 4102 150 3 0 chrY 19951983 19952617 -31560967 - HERVK3 LTR ERVK -5729 1514 879 385 164 0 87 chrY 19952626 19952730 -31560854 + LTR3 LTR ERVK 327 421 -11 5033 43 0 3 chrY 19952944 19953572 -31560012 - L1P LINE L1 -821 5330 4710 7322 31 0 0 chrY 19953572 19954413 -31559171 + L1PA2 LINE L1 5310 6155 0 1943 231 47 7 chrY 19954479 19955082 -31558502 - L1P3 LINE L1 -5185 690 9 216 0 0 0 chrY 19955863 19955887 -31557697 + (T)n Simple_repeat Simple_repeat 1 24 0 354 23 0 0 chrY 19956400 19956443 -31557141 + (TG)n Simple_repeat Simple_repeat 2 44 0 1685 178 28 0 chrY 19957222 19957508 -31556076 - AluSx SINE Alu -10 302 9 22 0 0 0 chrY 19957668 19957690 -31555894 + AT_rich Low_complexity Low_complexity 1 22 0 1752 166 3 32 chrY 19957794 19958107 -31555477 - AluSq SINE Alu -5 308 5 3015 84 2 104 chrY 19958851 19959350 -31554234 - LTR7 LTR ERV1 -2 448 1 10195 83 9 12 chrY 19959350 19960583 -31553001 - HERVH LTR ERV1 0 7713 6483 2401 94 123 20 chrY 19960583 19960989 -31552595 + LTR7 LTR ERV1 1 448 -2 10195 83 9 12 chrY 19960989 19961153 -31552431 - HERVH LTR ERV1 -1230 6483 6320 * 15283 176 30 29 chrY 19961146 19967676 -31545908 - HERVH LTR ERV1 -1317 5212 1 2949 100 0 102 chrY 19967678 19968177 -31545407 - LTR7 LTR ERV1 -2 448 1 1713 148 21 100 chrY 19969008 19969347 -31544237 - AluSx SINE Alu 0 312 1 31 0 0 0 chrY 19970598 19970629 -31542955 + AT_rich Low_complexity Low_complexity 1 31 0 41042 57 22 4 chrY 19970687 19976723 -31536861 - L1PA3 LINE L1 -4 6151 3 4720 178 95 24 chrY 19976734 19976847 -31536737 - MER52A-int LTR ERV1 -2949 4588 4484 1907 146 0 7 chrY 19976847 19977150 -31536434 - AluSx SINE Alu 0 312 19 4720 178 95 24 chrY 19977150 19978177 -31535407 - MER52A-int LTR ERV1 -3053 4484 3367 310 129 29 114 chrY 19978170 19978240 -31535344 - MER52A-int LTR ERV1 -2937 4059 1238 * 517 231 0 9 chrY 19978239 19978347 -31535237 + MER52-int LTR ERV1 980 1086 -6005 734 219 40 30 chrY 19978395 19978596 -31534988 - LTR4 LTR ERV1 -41 555 353 318 118 82 82 chrY 19978652 19978737 -31534847 - MER52A-int LTR ERV1 -6313 778 694 3828 156 10 2 chrY 19978739 19979316 -31534268 - MER52A-int LTR ERV1 -4812 2279 1698 425 59 0 0 chrY 19979339 19979390 -31534194 - MER52A-int LTR ERV1 -5335 1756 1706 1978 200 88 100 chrY 19979511 19979630 -31533954 - MER52A-int LTR ERV1 -6520 571 452 943 39 16 0 chrY 19979630 19979758 -31533826 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 1978 200 88 100 chrY 19979758 19980208 -31533376 - MER52A-int LTR ERV1 -6639 452 9 5135 251 111 51 chrY 19980208 19981786 -31531798 - MER52A LTR ERV1 0 1755 1 622 261 7 45 chrY 19981786 19982300 -31531284 + BSR/Beta Satellite Satellite 1 494 0 600 250 32 21 chrY 19982328 19983123 -31530461 + BSR/Beta Satellite Satellite 1 804 -34 233 363 29 0 chrY 19983166 19983268 -31530316 + BSR/Beta Satellite Satellite 45 149 -3 1182 240 37 93 chrY 19983422 19983584 -31530000 + BSR/Beta Satellite Satellite 1 171 -1197 2080 153 0 3 chrY 19983584 19983891 -31529693 + AluSq SINE Alu 1 306 -7 1182 240 37 93 chrY 19983891 19984225 -31529359 + BSR/Beta Satellite Satellite 171 522 -846 1462 181 0 97 chrY 19984225 19984567 -31529017 + AluY SINE Alu 1 309 -2 1182 240 37 93 chrY 19984567 19984671 -31528913 + BSR/Beta Satellite Satellite 522 1178 -190 429 81 0 48 chrY 19984769 19984831 -31528753 - HERVK3 LTR ERVK -2505 4738 4680 2410 109 0 0 chrY 19984834 19985164 -31528420 - HERVK3 LTR ERVK -2949 4294 3965 741 228 7 7 chrY 19985153 19985302 -31528282 - HERVK3 LTR ERVK -3559 3684 3536 * 3903 131 3 0 chrY 19985301 19985874 -31527710 - HERVK3 LTR ERVK -4582 2661 2087 3333 159 26 12 chrY 19985874 19986479 -31527105 - LTR6A LTR ERV1 0 564 1 21962 57 3 1 chrY 19986673 19992690 -31520894 + L1PA2 LINE L1 1 6154 -1 1816 218 19 37 chrY 19992691 19993209 -31520375 + MER52A-int LTR ERV1 2251 2759 -2458 1081 189 5 0 chrY 19993221 19993417 -31520167 + MER52A-int LTR ERV1 3702 3898 -1319 1128 211 69 10 chrY 19993469 19993820 -31519764 + MER52A-int LTR ERV1 4899 5216 -1 3445 250 133 44 chrY 19993827 19995101 -31518483 + MER52A LTR ERV1 10 1474 -281 215 103 26 0 chrY 19995104 19995143 -31518441 + (TA)n Simple_repeat Simple_repeat 1 40 0 720 234 0 0 chrY 19995171 19995325 -31518259 - BSR/Beta Satellite Satellite -225 154 1 557 267 23 36 chrY 19995489 19995717 -31517867 - BSR/Beta Satellite Satellite -9 938 709 856 0 9 9 chrY 19995717 19995822 -31517762 + (TTTC)n Simple_repeat Simple_repeat 4 108 0 557 267 23 36 chrY 19995822 19996440 -31517144 - BSR/Beta Satellite Satellite -238 709 1 472 248 18 39 chrY 19996454 19996868 -31516716 - BSR/Beta Satellite Satellite 0 405 1 1636 200 52 34 chrY 19996873 19997409 -31516175 - MLT2A2 LTR ERVL -8 546 1 1867 171 0 3 chrY 19997604 19997909 -31515675 - AluSc SINE Alu -5 304 1 562 278 19 37 chrY 19997944 19999218 -31514366 - BSR/Beta Satellite Satellite -10 1250 1 368 281 14 26 chrY 19999241 19999522 -31514062 - BSR/Beta Satellite Satellite 0 277 1 857 285 44 37 chrY 19999543 20000213 -31513371 - BSR/Beta Satellite Satellite -7 674 1 394 324 15 5 chrY 20000239 20000464 -31513120 - BSR/Beta Satellite Satellite -1 227 1 569 264 25 39 chrY 20000484 20002254 -31511330 - BSR/Beta Satellite Satellite 0 1744 1 1087 268 25 35 chrY 20002275 20002817 -31510767 - BSR/Beta Satellite Satellite -1 1172 626 1550 162 3 61 chrY 20002817 20003145 -31510439 - AluY SINE Alu 0 311 1 1087 268 25 35 chrY 20003145 20003460 -31510124 - BSR/Beta Satellite Satellite -547 626 1 1184 267 15 46 chrY 20003570 20004008 -31509576 - BSR/Beta Satellite Satellite -44 1456 1006 2038 178 28 14 chrY 20004008 20004367 -31509217 - THE1B LTR MaLR 0 364 1 1184 267 15 46 chrY 20004367 20005072 -31508512 - BSR/Beta Satellite Satellite -494 1006 1 253 336 23 15 chrY 20005123 20005336 -31508248 - BSR/Beta Satellite Satellite -10 214 1 666 243 7 21 chrY 20005353 20005728 -31507856 - BSR/Beta Satellite Satellite -3 369 1 592 238 4 50 chrY 20005739 20006394 -31507190 - BSR/Beta Satellite Satellite 0 1082 112 1558 189 51 40 chrY 20006394 20006765 -31506819 - THE1C LTR MaLR 0 375 1 592 238 4 50 chrY 20006765 20006873 -31506711 - BSR/Beta Satellite Satellite -970 112 1 600 243 16 58 chrY 20006885 20009126 -31504458 - BSR/Beta Satellite Satellite -3 2147 1 1650 169 3 80 chrY 20009283 20009621 -31503963 + AluSx SINE Alu 1 312 0 227 353 25 0 chrY 20009775 20009897 -31503687 - BSR/Beta Satellite Satellite -7 145 21 1994 195 90 25 chrY 20010043 20010521 -31503063 - LTR22 LTR ERVK 0 509 1 29332 122 7 3 chrY 20010521 20015015 -31498569 - HERVK22 LTR ERVK 0 6837 2327 2456 170 60 4 chrY 20015010 20015464 -31498120 - HERVK22 LTR ERVK -5932 905 427 * 5756 222 40 21 chrY 20015478 20015534 -31498050 + L1P3 LINE L1 1 54 -6407 234 0 0 0 chrY 20015534 20015560 -31498024 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5756 222 40 21 chrY 20015560 20017671 -31495913 + L1P3 LINE L1 54 2238 -4223 409 247 21 0 chrY 20017673 20017770 -31495814 + LTR6A LTR ERV1 466 564 0 2185 164 7 68 chrY 20020030 20020488 -31493096 - LTR12 LTR ERV1 -232 482 53 229 250 0 0 chrY 20020488 20020540 -31493044 - LTR30 LTR ERV1 -670 52 1 503 192 0 10 chrY 20020999 20021098 -31492486 + MER4A LTR ERV1 1 98 -566 1165 214 6 88 chrY 20021150 20021467 -31492117 + MER4A LTR ERV1 372 662 -2 7032 51 5 0 chrY 20021603 20022723 -31490861 - L1PA4 LINE L1 -3 6152 5031 23 0 0 0 chrY 20023356 20023379 -31490205 + AT_rich Low_complexity Low_complexity 1 23 0 1792 164 4 0 chrY 20023401 20023709 -31489875 + AluSx SINE Alu 1 309 0 1794 187 0 0 chrY 20023762 20024067 -31489517 + AluSg SINE Alu 1 305 -5 1909 137 100 51 chrY 20024565 20024954 -31488630 + MER51D LTR ERV1 2 370 -287 1723 174 4 0 chrY 20024954 20025229 -31488355 + AluSc SINE Alu 1 276 -33 231 36 0 0 chrY 20025232 20025260 -31488324 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 1909 137 100 51 chrY 20025260 20025335 -31488249 + MER51D LTR ERV1 371 493 -164 951 148 7 0 chrY 20025335 20025477 -31488107 - AluSc SINE Alu -166 143 1 404 229 19 9 chrY 20025477 20025582 -31488002 + MER51D LTR ERV1 490 595 -62 21 36 0 0 chrY 20026641 20026669 -31486915 + AT_rich Low_complexity Low_complexity 1 28 0 2344 106 0 10 chrY 20028095 20028407 -31485177 - AluSc SINE Alu 0 309 1 1067 199 82 52 chrY 20030232 20030848 -31482736 + LOR1-int LTR ERV1 1739 4172 -2504 2340 173 105 25 chrY 20031269 20031871 -31481713 + MER51D LTR ERV1 8 657 0 1801 150 0 18 chrY 20033331 20033723 -31479861 - AluY SINE Alu 0 387 1 1137 204 4 9 chrY 20033901 20034131 -31479453 - MER4A LTR ERV1 0 664 436 2088 205 74 35 chrY 20034169 20034876 -31478708 - LTR8A LTR ERV1 -2 689 3 522 254 0 0 chrY 20034876 20034986 -31478598 + AluSg/x SINE Alu 167 276 -36 49 84 0 0 chrY 20035046 20035165 -31478419 + AT_rich Low_complexity Low_complexity 1 119 0 1451 187 27 139 chrY 20035358 20035785 -31477799 - MER65C LTR ERV1 0 461 101 2438 87 0 0 chrY 20035785 20036083 -31477501 - AluSg SINE Alu -12 298 1 1451 187 27 139 chrY 20036083 20036174 -31477410 - MER65C LTR ERV1 -360 101 1 5868 210 31 15 chrY 20036196 20037673 -31475911 - L1MA3 LINE L1 0 6305 4852 3619 107 2 6 chrY 20037673 20038186 -31475398 - MER9 LTR ERVK 0 511 1 5868 210 31 15 chrY 20038186 20038488 -31475096 - L1MA3 LINE L1 -1453 4852 4556 336 24 0 0 chrY 20038488 20038529 -31475055 + (TG)n Simple_repeat Simple_repeat 2 42 0 5868 210 31 15 chrY 20038529 20039279 -31474305 - L1MA3 LINE L1 -1749 4556 3753 672 220 0 17 chrY 20039279 20039452 -31474132 - L1MA8 LINE L1 -161 6130 5961 2762 196 72 31 chrY 20039610 20040362 -31473222 - L1MA7 LINE L1 -139 6152 5370 1526 217 16 7 chrY 20040364 20040673 -31472911 - AluSx SINE Alu 0 312 1 334 228 110 35 chrY 20040748 20040893 -31472691 + MLT1D LTR MaLR 1 156 -349 3250 182 30 76 chrY 20040917 20041729 -31471855 - LTR1 LTR ERV1 0 785 12 660 243 53 100 chrY 20041737 20042038 -31471546 + MLT1D LTR MaLR 162 486 -19 1892 153 3 3 chrY 20042251 20042539 -31471045 - AluY SINE Alu -23 288 1 1748 203 0 0 chrY 20043051 20043361 -31470223 + AluSx SINE Alu 1 310 -2 26 0 0 0 chrY 20043361 20043387 -31470197 + AT_rich Low_complexity Low_complexity 1 26 0 1933 168 0 0 chrY 20044368 20044660 -31468924 - AluSx SINE Alu -20 292 1 1913 171 0 3 chrY 20045039 20045332 -31468252 + AluSx SINE Alu 1 292 -20 263 267 0 13 chrY 20045586 20045661 -31467923 + GA-rich Low_complexity Low_complexity 2 75 0 242 255 88 20 chrY 20045699 20045801 -31467783 + MER65C LTR ERV1 1 109 -352 590 243 43 27 chrY 20045831 20046016 -31467568 + MER65B LTR ERV1 231 418 -113 1279 188 0 5 chrY 20046017 20046230 -31467354 - AluSx SINE Alu -100 212 1 651 269 19 0 chrY 20046285 20046471 -31467113 - AluJo SINE Alu 0 308 120 35969 89 12 4 chrY 20046471 20052574 -31461010 - L1PA5 LINE L1 -4 6150 11 282 200 0 0 chrY 20052758 20052823 -31460761 - L1MB5 LINE L1 -25 6149 6085 725 298 4 4 chrY 20052825 20053070 -31460514 - L1MB5 LINE L1 -156 6018 5774 319 258 23 78 chrY 20053147 20053275 -31460309 - L1MB5 LINE L1 -749 5417 5297 476 289 30 20 chrY 20053283 20053584 -31460000 - L1MB5 LINE L1 -816 5330 5027 276 30 0 0 chrY 20054520 20054553 -31459031 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 322 0 0 chrY 20054559 20054649 -31458935 + L1MC4 LINE L1 6614 6703 -1339 324 0 0 0 chrY 20054649 20054685 -31458899 + (TA)n Simple_repeat Simple_repeat 2 37 0 226 278 0 0 chrY 20055001 20055073 -31458511 - L1MB5 LINE L1 -1825 4321 4250 1722 246 57 31 chrY 20055085 20055212 -31458372 - MER21B LTR ERV1 -371 492 370 1780 159 10 17 chrY 20055212 20055513 -31458071 + AluSq SINE Alu 1 299 -14 1722 246 57 31 chrY 20055513 20055590 -31457994 - MER21B LTR ERV1 -493 370 296 1519 234 92 10 chrY 20055590 20055983 -31457601 - MSTB LTR MaLR -1 425 1 1722 246 57 31 chrY 20055983 20056253 -31457331 - MER21B LTR ERV1 -567 296 5 1930 151 57 23 chrY 20056312 20056664 -31456920 + THE1B LTR MaLR 1 364 0 1733 204 40 34 chrY 20056749 20057408 -31456176 - MER21B-int LTR ERV1 -59 4132 3378 2809 209 36 29 chrY 20057409 20058107 -31455477 + MER50 LTR ERV1 2 704 -30 2696 256 26 15 chrY 20058123 20058853 -31454731 - MER21B-int LTR ERV1 -802 3389 2652 1790 207 78 83 chrY 20058846 20059542 -31454042 - MER21B-int LTR ERV1 -1484 2707 2016 * 280 58 19 39 chrY 20059549 20059601 -31453983 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 821 115 54 20 chrY 20059619 20059767 -31453817 - L1PA8A LINE L1 -3 6128 5976 2821 168 60 58 chrY 20060047 20060522 -31453062 - MER4B-int LTR ERV1 -1617 5141 4663 1581 126 153 0 chrY 20060522 20060776 -31452808 - AluSc SINE Alu -15 294 2 2821 168 60 58 chrY 20060776 20060989 -31452595 - MER4B-int LTR ERV1 -2095 4663 4452 1129 201 51 4 chrY 20060988 20061222 -31452362 - MER4B-int LTR ERV1 -2670 4088 3844 * 555 249 54 45 chrY 20061528 20061749 -31451835 + MER61E LTR ERV1 341 563 -6 362 196 10 59 chrY 20061757 20061859 -31451725 + MER61-int LTR ERV1 1 97 -6899 * 3054 260 46 62 chrY 20061857 20064191 -31449393 + MER61-int LTR ERV1 259 2807 -4189 2954 154 98 12 chrY 20064189 20064778 -31448806 + LTR19A-int LTR ERV1 645 1284 -4302 * 3302 125 7 4 chrY 20064775 20065333 -31448251 + LTR19A-int LTR ERV1 1436 1995 -3591 357 129 0 0 chrY 20065334 20065396 -31448188 - PABL_A-int LTR ERV1 -2125 2890 2829 * 19809 120 40 34 chrY 20065388 20065470 -31448114 + LTR19A-int LTR ERV1 1995 2075 -3511 1974 167 7 0 chrY 20065470 20065775 -31447809 - AluSg SINE Alu 0 310 4 19809 120 40 34 chrY 20065775 20069266 -31444318 + LTR19A-int LTR ERV1 2075 5586 0 2107 173 36 57 chrY 20069266 20069762 -31443822 + LTR19A LTR ERV1 1 486 0 1857 193 15 52 chrY 20069762 20070239 -31443345 + MER61-int LTR ERV1 4747 5205 -2213 967 219 102 55 chrY 20070239 20070660 -31442924 + LTR7 LTR ERV1 1 441 -9 4972 187 54 36 chrY 20070664 20072166 -31441418 + MER61-int LTR ERV1 2885 4359 -2637 975 102 0 24 chrY 20072166 20072333 -31441251 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1841 170 0 7 chrY 20072333 20072615 -31440969 - AluSx SINE Alu -32 280 1 4972 187 54 36 chrY 20072615 20072835 -31440749 + MER61-int LTR ERV1 4358 6995 -1 290 234 16 0 chrY 20072900 20072964 -31440620 + LTR25 LTR ERV1 288 352 -442 665 251 57 9 chrY 20073144 20073355 -31440229 + MER61E LTR ERV1 344 564 -5 676 226 39 83 chrY 20073365 20073595 -31439989 - MER4B-int LTR ERV1 -2913 3845 3626 484 277 93 20 chrY 20073634 20074480 -31439104 - L1M2 LINE L1 -3954 3255 2303 1120 232 29 72 chrY 20074513 20074980 -31438604 - LTR10B LTR ERV1 -6 541 1 6968 288 23 32 chrY 20074980 20076749 -31436835 - LTR10B-int LTR ERV1 0 7769 5984 2297 116 3 0 chrY 20076749 20077059 -31436525 - AluY SINE Alu 0 311 1 1847 132 25 18 chrY 20077062 20077389 -31436195 - AluY SINE Alu 0 329 1 6968 288 23 32 chrY 20077389 20078710 -31434874 - LTR10B-int LTR ERV1 -1787 5982 4062 198 0 0 0 chrY 20078710 20078732 -31434852 + (T)n Simple_repeat Simple_repeat 1 22 0 26514 47 3 0 chrY 20078772 20083048 -31430536 - L1PA3 LINE L1 0 6155 1867 5473 277 41 32 chrY 20083060 20087686 -31425898 - LTR10B-int LTR ERV1 -2945 4120 26 897 263 19 63 chrY 20087710 20088029 -31425555 - LTR10B LTR ERV1 0 547 243 287 253 42 11 chrY 20088109 20088204 -31425380 - LTR10B LTR ERV1 -449 98 1 367 275 81 48 chrY 20088204 20088342 -31425242 - L1M2 LINE L1 -4945 2264 2132 1714 188 3 0 chrY 20088342 20088635 -31424949 - AluSx SINE Alu -17 295 2 367 275 81 48 chrY 20088635 20088953 -31424631 - L1M2 LINE L1 -5077 2132 1774 360 0 0 0 chrY 20088953 20088993 -31424591 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 367 275 81 48 chrY 20088993 20089039 -31424545 - L1M2 LINE L1 -5435 1774 1731 233 395 26 20 chrY 20089881 20090033 -31423551 - L1M2 LINE L1 -6351 858 706 228 333 0 0 chrY 20090115 20090205 -31423379 + L1MA5 LINE L1 2655 2744 -3402 1302 264 72 28 chrY 20090233 20091047 -31422537 + L1MA5 LINE L1 3951 4800 -1346 1160 259 75 50 chrY 20091104 20091340 -31422244 + L1MA5 LINE L1 5511 5740 -560 195 42 0 0 chrY 20091340 20091364 -31422220 + (CA)n Simple_repeat Simple_repeat 2 25 0 1160 259 75 50 chrY 20091364 20091852 -31421732 + L1MA5 LINE L1 5740 6240 -60 351 214 60 95 chrY 20091889 20092057 -31421527 + L1MA6 LINE L1 5148 5309 -837 564 225 8 0 chrY 20092057 20092186 -31421398 + AluSg/x SINE Alu 179 308 -4 484 198 0 0 chrY 20092186 20092282 -31421302 + L1MA6 LINE L1 5665 5760 -540 685 265 5 0 chrY 20092285 20092474 -31421110 + L1MA6 LINE L1 5831 6020 -280 5129 47 2 0 chrY 20093082 20093705 -31419879 - L1PA3 LINE L1 0 6155 5532 10365 68 18 1 chrY 20093705 20095136 -31418448 - L1P LINE L1 -3983 2163 708 1886 251 60 58 chrY 20095311 20096353 -31417231 - L1MA6 LINE L1 -3 6297 5254 1582 157 40 0 chrY 20096354 20096603 -31416981 - AluSg SINE Alu -2 308 50 1395 228 22 12 chrY 20096604 20097007 -31416577 - L1MA6 LINE L1 -1827 4319 3913 859 266 17 10 chrY 20097013 20097303 -31416281 + LTR22B LTR ERVK 5 296 -196 875 201 5 62 chrY 20097335 20097559 -31416025 + LTR22B LTR ERVK 279 489 -3 1653 166 15 66 chrY 20097706 20098098 -31415486 + HERVK22 LTR ERVK 13 384 -6453 3540 137 108 14 chrY 20098098 20098727 -31414857 - LTR12 LTR ERV1 0 688 1 4561 132 20 3 chrY 20098730 20099486 -31414098 - HERV9 LTR ERV1 -4 8395 7627 1947 185 102 81 chrY 20099484 20100366 -31413218 - HERV9 LTR ERV1 -5156 1740 840 * 1244 106 5 0 chrY 20100367 20100555 -31413029 - HERV9 LTR ERV1 -3455 4944 4756 * 17762 128 8 20 chrY 20100554 20103506 -31410078 - HERV9 LTR ERV1 -5427 2972 56 1500 217 16 3 chrY 20103576 20103880 -31409704 + HERVK22 LTR ERVK 381 688 -6149 22 56 0 0 chrY 20104254 20104290 -31409294 + AT_rich Low_complexity Low_complexity 1 36 0 409 250 0 0 chrY 20104332 20104424 -31409160 + HERVK22 LTR ERVK 2382 2473 -4364 5826 183 49 3 chrY 20104433 20104533 -31409051 + HERVK22 LTR ERVK 2027 2121 -3141 2334 109 0 0 chrY 20104533 20104835 -31408749 - AluY SINE Alu -9 302 1 5826 183 49 3 chrY 20104835 20106178 -31407406 + HERVK22 LTR ERVK 2121 2453 -2809 881 241 31 45 chrY 20106177 20106468 -31407116 + pTR5 LTR ERV1 742 1028 -1410 * 4503 115 14 57 chrY 20106525 20107244 -31406340 + LTR12 LTR ERV1 1 688 0 916 137 0 20 chrY 20107244 20107390 -31406194 + HERVK22 LTR ERVK 4203 4347 -2490 965 158 0 6 chrY 20107391 20107549 -31406035 + HERVK22 LTR ERVK 4767 4923 -1914 2982 194 33 58 chrY 20107706 20108637 -31404947 + HERVKC4 LTR ERVK 2678 6837 0 886 252 20 14 chrY 20108637 20108931 -31404653 + LTR22B LTR ERVK 1 296 -196 1191 107 0 3 chrY 20108955 20109169 -31404415 - AluY SINE Alu -11 300 14 806 211 4 62 chrY 20109182 20109409 -31404175 + LTR22B LTR ERVK 279 492 0 2040 254 147 40 chrY 20109443 20110980 -31402604 - L1 LINE L1 -2236 5329 3629 4054 163 15 58 chrY 20110993 20111672 -31401912 - L1PA12 LINE L1 -2 6166 5537 1620 146 16 93 chrY 20111672 20111995 -31401589 - AluY SINE Alu -9 302 5 4054 163 15 58 chrY 20111995 20112340 -31401244 - L1PA12 LINE L1 -631 5537 5179 231 176 39 0 chrY 20112345 20112396 -31401188 + L1P LINE L1 2312 2364 -3782 333 201 34 40 chrY 20112445 20112594 -31400990 - L1 LINE L1 -3986 3580 3433 23 54 0 0 chrY 20112742 20112779 -31400805 + AT_rich Low_complexity Low_complexity 1 37 0 990 285 55 61 chrY 20112782 20114015 -31399569 - L1 LINE L1 -4372 3193 2063 565 246 62 82 chrY 20114135 20114391 -31399193 - L1 LINE L1 -6617 872 622 298 240 13 58 chrY 20114648 20114802 -31398782 + L1M3e LINE L1 18 164 -6866 2207 139 8 0 chrY 20116135 20116487 -31397097 + THE1A LTR MaLR 1 355 0 9309 147 24 4 chrY 20116488 20118023 -31395561 + THE1A-int LTR MaLR 2 1566 -14 444 103 15 0 chrY 20118028 20118096 -31395488 + THE1A LTR MaLR 1 69 -286 4021 86 0 0 chrY 20118097 20118681 -31394903 - L1P LINE L1 -3012 3134 2551 6721 67 3 3 chrY 20118681 20119833 -31393751 + L1PA6 LINE L1 4999 6153 -1 183 42 0 0 chrY 20119884 20119908 -31393676 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1528 163 45 14 chrY 20119911 20120200 -31393384 + THE1A LTR MaLR 58 355 0 24 0 0 0 chrY 20120411 20120435 -31393149 + AT_rich Low_complexity Low_complexity 1 24 0 342 237 144 33 chrY 20120686 20120806 -31392778 - MSTD LTR MaLR -263 133 1 1518 210 105 8 chrY 20120864 20121254 -31392330 + MSTA LTR MaLR 1 428 0 491 199 8 32 chrY 20121286 20121423 -31392161 + Tigger2 DNA MER2_type 43 2452 -266 324 0 0 0 chrY 20121474 20121510 -31392074 + (TTA)n Simple_repeat Simple_repeat 3 38 0 15695 133 19 3 chrY 20121510 20124921 -31388663 - L1PA7 LINE L1 -18 6136 2666 2589 121 40 104 chrY 20124921 20125526 -31388058 + L1PA7 LINE L1 2099 2664 -3482 1914 244 72 13 chrY 20125561 20126254 -31387330 - L1MA4 LINE L1 -25 6275 5542 26 74 0 0 chrY 20126277 20126331 -31387253 + AT_rich Low_complexity Low_complexity 1 54 0 761 292 35 10 chrY 20126394 20126682 -31386902 - LTR44 LTR ERV1 -1 518 224 21 36 0 0 chrY 20126743 20126771 -31386813 + AT_rich Low_complexity Low_complexity 1 28 0 1880 252 52 26 chrY 20128293 20128991 -31384593 + L1MA4A LINE L1 5258 5973 -330 717 266 140 4 chrY 20129031 20129561 -31384023 + L1MA6 LINE L1 2963 3564 -2582 1188 257 26 72 chrY 20129617 20129694 -31383890 + L1MA6 LINE L1 4704 4783 -1363 3561 139 87 10 chrY 20129694 20130307 -31383277 - PABL_A LTR ERV1 0 660 1 1188 257 26 72 chrY 20130307 20130953 -31382631 + L1MA6 LINE L1 4783 5394 -752 301 225 0 0 chrY 20131091 20131162 -31382422 + L1MA6 LINE L1 5530 5600 -700 5655 177 22 5 chrY 20131185 20132266 -31381318 + L1PA8A LINE L1 4 1103 -4772 * 7653 137 6 65 chrY 20132259 20133265 -31380319 + L1PA8A LINE L1 4110 5174 -1272 2039 142 0 0 chrY 20133265 20133560 -31380024 - AluY SINE Alu -16 295 1 7653 137 6 65 chrY 20133560 20134871 -31378713 + L1PA8A LINE L1 5174 6290 -156 9947 166 30 16 chrY 20134871 20136736 -31376848 + MER61A-int LTR ERV1 3319 5208 -9 419 205 12 0 chrY 20136747 20136830 -31376754 + MER61A LTR ERV1 3 86 -257 1118 217 128 29 chrY 20136834 20137333 -31376251 - LTR61 LTR ERV1 0 595 1 1106 204 31 15 chrY 20137340 20137600 -31375984 + MER61A LTR ERV1 80 343 0 477 182 78 136 chrY 20137628 20137730 -31375854 + L1MA6 LINE L1 6008 6114 -186 1857 158 4 4 chrY 20137730 20138008 -31375576 + AluSg SINE Alu 6 283 -27 477 182 78 136 chrY 20138008 20138213 -31375371 + L1MA6 LINE L1 6114 6297 -3 2224 104 10 7 chrY 20138285 20138594 -31374990 + AluY SINE Alu 1 310 -1 1642 166 4 8 chrY 20138811 20139098 -31374486 + AluSp SINE Alu 42 313 0 243 133 0 0 chrY 20139640 20139685 -31373899 + (TC)n Simple_repeat Simple_repeat 2 46 0 575 204 77 44 chrY 20139701 20139882 -31373702 - L1M2 LINE L1 -549 7167 6981 * 2284 238 52 68 chrY 20139880 20139915 -31373669 + L1MB5 LINE L1 1420 1454 -6111 1811 168 16 0 chrY 20139915 20140090 -31373494 - AluSg SINE Alu -1 309 125 189 0 0 0 chrY 20140090 20140111 -31373473 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1811 168 16 0 chrY 20140111 20140239 -31373345 - AluSg SINE Alu -185 125 1 2284 238 52 68 chrY 20140239 20141048 -31372536 + L1MB5 LINE L1 1454 2251 -5314 1459 181 33 54 chrY 20141113 20141202 -31372382 + L1MB5 LINE L1 2264 2353 -5212 1590 199 7 4 chrY 20141202 20141523 -31372061 - AluSg SINE Alu 0 325 4 1459 181 33 54 chrY 20141523 20141926 -31371658 + L1MB5 LINE L1 2353 2739 -4826 * 3560 184 54 65 chrY 20141920 20142787 -31370797 + L1MB5 LINE L1 5694 6544 -1036 1874 94 0 8 chrY 20142787 20143032 -31370552 + AluY SINE Alu 50 292 -19 3560 184 54 65 chrY 20143032 20143290 -31370294 + L1MB5 LINE L1 6544 6803 -777 338 269 97 18 chrY 20143320 20143599 -31369985 + L1MB5 LINE L1 7068 7368 -225 265 308 11 43 chrY 20144044 20144229 -31369355 + CT-rich Low_complexity Low_complexity 2 180 0 22 0 0 0 chrY 20145109 20145131 -31368453 + AT_rich Low_complexity Low_complexity 1 22 0 2746 236 63 38 chrY 20145364 20146126 -31367458 + MST-int LTR MaLR 1 781 -870 6925 247 37 22 chrY 20146143 20146580 -31367004 - L1M2 LINE L1 -743 6822 6393 968 260 38 45 chrY 20146580 20146872 -31366712 + AluJb SINE Alu 1 290 -12 6925 247 37 22 chrY 20146872 20149060 -31364524 - L1M2 LINE L1 -1172 6393 4269 867 164 12 195 chrY 20149063 20149484 -31364100 - L1PB3 LINE L1 -3 6151 5808 * 5326 286 44 33 chrY 20149461 20150577 -31363007 - L1M2 LINE L1 -5758 1807 666 1936 137 20 0 chrY 20150577 20150869 -31362715 - AluY SINE Alu -12 299 2 5326 286 44 33 chrY 20150869 20151400 -31362184 - L1M2 LINE L1 -6899 666 142 275 151 93 5 chrY 20151461 20151544 -31362040 + L1M1 LINE L1 5793 5881 -419 3439 242 78 57 chrY 20151550 20152542 -31361042 - L1MA5 LINE L1 0 6300 5330 1908 136 42 0 chrY 20152542 20152829 -31360755 - AluSg1 SINE Alu -10 299 1 3439 242 78 57 chrY 20152829 20153104 -31360480 - L1MA5 LINE L1 -970 5330 5062 2014 127 0 37 chrY 20153104 20153428 -31360156 - AluSx SINE Alu 0 312 1 3439 242 78 57 chrY 20153428 20154959 -31358625 - L1MA5 LINE L1 -1238 5062 3440 34 0 0 0 chrY 20154966 20155000 -31358584 + AT_rich Low_complexity Low_complexity 1 34 0 5202 212 30 18 chrY 20155002 20157378 -31356206 - L1MA1 LINE L1 0 7721 5309 240 111 0 0 chrY 20157430 20157466 -31356118 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 282 240 194 21 chrY 20157562 20157850 -31355734 - L1MA5 LINE L1 -2684 3462 3125 1047 247 28 14 chrY 20157866 20158157 -31355427 - L1MA1 LINE L1 -2283 5282 4988 1202 194 9 5 chrY 20158157 20158374 -31355210 - AluSx SINE Alu -94 218 1 1002 268 22 6 chrY 20158385 20158751 -31354833 - L1MA1 LINE L1 -5001 2564 2193 578 191 46 0 chrY 20158781 20158912 -31354672 - L1MA3 LINE L1 -38 6267 6131 403 299 65 9 chrY 20158909 20159140 -31354444 - L1MA5 LINE L1 -3038 3108 2865 * 20626 156 28 15 chrY 20159135 20163153 -31350431 - L1PA8A LINE L1 -611 5835 1768 737 231 96 65 chrY 20163153 20163571 -31350013 - LTR15 LTR ERV1 0 595 168 31923 266 22 31 chrY 20163633 20172140 -31341444 - HERV3 LTR ERV1 0 8426 1 700 197 88 131 chrY 20172141 20172277 -31341307 - LTR15 LTR ERV1 0 596 456 2224 102 0 0 chrY 20172277 20172570 -31341014 - AluY SINE Alu -18 293 1 700 197 88 131 chrY 20172570 20172854 -31340730 - LTR15 LTR ERV1 -140 456 172 9357 170 25 19 chrY 20172914 20174268 -31339316 - L1PA8A LINE L1 -4691 1760 406 183 80 0 0 chrY 20174268 20174293 -31339291 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9357 170 25 19 chrY 20174293 20174697 -31338887 - L1PA8A LINE L1 -6045 406 6 21 36 0 0 chrY 20174949 20174977 -31338607 + AT_rich Low_complexity Low_complexity 1 28 0 590 296 61 55 chrY 20175013 20175392 -31338192 - L1M4 LINE L1 -1489 4657 4277 378 289 108 40 chrY 20175400 20175649 -31337935 - L1M4 LINE L1 -1967 4179 3914 24 32 0 0 chrY 20175858 20175889 -31337695 + AT_rich Low_complexity Low_complexity 1 31 0 1242 285 17 24 chrY 20175906 20176320 -31337264 - L1PB4 LINE L1 -24 6132 5722 537 58 0 0 chrY 20176320 20176389 -31337195 + (TA)n Simple_repeat Simple_repeat 1 69 0 654 168 25 107 chrY 20176389 20176586 -31336998 - AluSg/x SINE Alu -10 300 120 1570 229 61 19 chrY 20176586 20177196 -31336388 - L1PB4 LINE L1 -441 5715 5083 2043 273 52 42 chrY 20177288 20178492 -31335092 - L1M4 LINE L1 -2364 3782 2568 2851 223 64 10 chrY 20178585 20179356 -31334228 - L1PB4 LINE L1 -12 6144 5333 4181 182 40 34 chrY 20179406 20180435 -31333149 - L1PA14 LINE L1 -33 6128 5108 1124 286 40 64 chrY 20180459 20181376 -31332208 - L1PB4 LINE L1 -2988 3158 2264 262 204 0 111 chrY 20181447 20181478 -31332106 - L1MB8 LINE L1 -37 6141 6108 1788 169 7 14 chrY 20181478 20181773 -31331811 + AluSx SINE Alu 1 293 -19 262 204 0 111 chrY 20181773 20181849 -31331735 - L1MB8 LINE L1 -70 6108 6046 665 342 28 63 chrY 20182017 20182089 -31331495 + L1M2 LINE L1 16 89 -6760 2366 72 3 0 chrY 20182089 20182379 -31331205 - AluY SINE Alu -8 303 13 665 342 28 63 chrY 20182379 20182701 -31330883 + L1M2 LINE L1 89 396 -6453 2109 326 19 51 chrY 20183176 20184168 -31329416 + L1M2 LINE L1 792 1751 -5098 3057 231 35 14 chrY 20184182 20184975 -31328609 - L1PA16 LINE L1 -9 7595 6786 1292 281 96 36 chrY 20185025 20185928 -31327656 - L1PA16 LINE L1 -4447 3137 2182 290 96 0 19 chrY 20186028 20186080 -31327504 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2032 110 0 31 chrY 20186098 20186458 -31327126 + AluY SINE Alu 1 350 0 1468 205 0 7 chrY 20186458 20186736 -31326848 - AluSx SINE Alu -36 276 1 226 337 53 0 chrY 20186886 20186981 -31326603 - L1PA16 LINE L1 -5399 2182 2083 498 398 43 26 chrY 20187239 20187701 -31325883 - L1PA16 LINE L1 -6317 1257 788 627 258 49 25 chrY 20187714 20187897 -31325687 + L1M2 LINE L1 1742 1919 -4930 2320 103 0 3 chrY 20187897 20188209 -31325375 + AluY SINE Alu 1 311 0 627 258 49 25 chrY 20188209 20188436 -31325148 + L1M2 LINE L1 1919 2173 -4676 406 348 82 32 chrY 20188516 20188911 -31324673 + L1MA7 LINE L1 17 426 -6422 3467 181 16 97 chrY 20189612 20190476 -31323108 - LTR25 LTR ERV1 0 794 1 250 326 11 11 chrY 20190490 20190579 -31323005 + L1PA15-16 LINE L1 1471 1559 -5290 283 226 23 119 chrY 20190788 20190866 -31322718 + L1MA7 LINE L1 2821 2905 -3943 1734 104 26 30 chrY 20190866 20191135 -31322449 + AluY SINE Alu 39 306 -5 1206 248 3 27 chrY 20191145 20191444 -31322140 + AluJb SINE Alu 1 292 -10 186 43 0 0 chrY 20191451 20191474 -31322110 + (CA)n Simple_repeat Simple_repeat 2 24 0 283 226 23 119 chrY 20191474 20191637 -31321947 + L1MA7 LINE L1 2920 3056 -3792 4190 284 65 36 chrY 20191670 20194553 -31319031 + L1MA7 LINE L1 3012 5987 -861 733 148 7 84 chrY 20194553 20194708 -31318876 + THE1-int LTR MaLR 1364 1506 -74 827 218 170 57 chrY 20194763 20195098 -31318486 - THE1C LTR MaLR -2 373 1 7085 195 10 72 chrY 20195103 20196728 -31316856 - MSTA-int LTR MaLR -6 1574 53 2261 86 0 3 chrY 20196728 20197031 -31316553 - AluY SINE Alu -9 302 1 7085 195 10 72 chrY 20197031 20197080 -31316504 - MSTA-int LTR MaLR -1527 53 3 1555 186 146 11 chrY 20197082 20197459 -31316125 - MSTA LTR MaLR 0 428 1 929 258 42 15 chrY 20197459 20197792 -31315792 + L1P5 LINE L1 5322 5663 -493 * 1998 260 64 22 chrY 20197775 20198498 -31315086 + L1MA7 LINE L1 6175 6935 -58 306 87 0 0 chrY 20198498 20198544 -31315040 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 1998 260 64 22 chrY 20198544 20198600 -31314984 + L1MA7 LINE L1 6935 6987 -6 180 111 0 0 chrY 20198949 20198976 -31314608 + (TA)n Simple_repeat Simple_repeat 2 28 0 261 0 0 0 chrY 20199001 20199030 -31314554 + (TG)n Simple_repeat Simple_repeat 2 30 0 1770 159 14 3 chrY 20199130 20199413 -31314171 - AluSq SINE Alu -18 295 10 496 202 0 29 chrY 20199810 20199914 -31313670 - FRAM SINE Alu -8 168 68 2352 91 0 7 chrY 20199925 20200234 -31313350 - AluY SINE Alu -4 307 1 332 300 154 24 chrY 20200285 20200532 -31313052 - L1M4c LINE L1 -4035 2349 2071 423 329 102 25 chrY 20200609 20200757 -31312827 - L1M4c LINE L1 -4253 2130 1995 1963 96 6 78 chrY 20200757 20201091 -31312493 - AluY SINE Alu -1 310 1 423 329 102 25 chrY 20201091 20201245 -31312339 - L1M4c LINE L1 -4388 1995 1591 24 0 0 0 chrY 20201265 20201289 -31312295 + AT_rich Low_complexity Low_complexity 1 24 0 34 45 0 15 chrY 20201310 20201343 -31312241 + AT_rich Low_complexity Low_complexity 1 33 -32 4292 95 0 10 chrY 20201343 20201955 -31311629 - L1PA7 LINE L1 -3 6151 5546 34 45 0 15 chrY 20201955 20201987 -31311597 + AT_rich Low_complexity Low_complexity 33 65 0 318 331 12 0 chrY 20202027 20202199 -31311385 - L1M1 LINE L1 -4453 3112 2939 11151 118 17 6 chrY 20202252 20204019 -31309565 + L1P LINE L1 2406 4192 -1954 26 0 0 0 chrY 20204307 20204333 -31309251 + AT_rich Low_complexity Low_complexity 1 26 0 1126 213 0 30 chrY 20204338 20204568 -31309016 - AluJb SINE Alu -81 231 9 2016 287 46 41 chrY 20205515 20207153 -31306431 + L1PB4 LINE L1 669 2419 -3784 5610 178 17 6 chrY 20207189 20208382 -31305202 - L1MA2 LINE L1 0 6304 5101 11572 69 13 7 chrY 20208402 20209976 -31303608 + L1P LINE L1 3409 4991 -1155 1513 46 0 0 chrY 20209973 20210167 -31303417 - L1P LINE L1 -965 5181 4988 * 7018 205 16 69 chrY 20210211 20211876 -31301708 + THE1C-int LTR MaLR 3 1578 -2 805 256 91 60 chrY 20211885 20212236 -31301348 + THE1C LTR MaLR 14 375 0 454 246 102 0 chrY 20212354 20212472 -31301112 - L1M1 LINE L1 -5733 1832 1703 842 279 71 0 chrY 20212474 20212714 -31300870 - L1M1 LINE L1 -6439 1126 870 * 1008 274 38 46 chrY 20212700 20213179 -31300405 + L1PB4 LINE L1 4747 5221 -982 354 147 0 0 chrY 20213179 20213247 -31300337 + (TA)n Simple_repeat Simple_repeat 2 69 0 3318 220 25 5 chrY 20213337 20214183 -31299401 + L1PB4 LINE L1 5247 6109 -104 232 200 17 0 chrY 20214186 20214246 -31299338 + L1PB4 LINE L1 6143 6203 -10 371 252 26 0 chrY 20214255 20214370 -31299214 - L1M LINE L1 -744 5422 5305 416 330 91 46 chrY 20214426 20214886 -31298698 - L1M4 LINE L1 -914 5232 4752 263 303 11 0 chrY 20215239 20215328 -31298256 - MIR SINE MIR -3 259 170 32 26 0 0 chrY 20216060 20216099 -31297485 + AT_rich Low_complexity Low_complexity 1 39 0 2734 7 0 0 chrY 20216099 20216392 -31297192 - AluYa5 SINE Alu -16 295 3 1144 233 69 49 chrY 20216588 20216634 -31296950 - THE1C LTR MaLR -12 363 319 297 68 0 0 chrY 20216634 20216678 -31296906 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1144 233 69 49 chrY 20216678 20216978 -31296606 - THE1C LTR MaLR -56 319 10 5216 213 44 13 chrY 20216988 20218101 -31295483 - THE1C-int LTR MaLR -5 1575 428 1317 230 29 16 chrY 20218261 20218616 -31294968 + LTR10B LTR ERV1 176 505 0 1383 143 19 143 chrY 20218628 20219005 -31294579 - THE1C-int LTR MaLR -1249 331 2 1519 211 29 52 chrY 20219005 20219389 -31294195 - THE1C LTR MaLR 0 375 1 609 343 55 10 chrY 20219623 20219912 -31293672 + LTR16A LTR ERVL 53 354 -96 2910 120 18 29 chrY 20220537 20220980 -31292604 + MLT2A1 LTR ERVL 1 438 -6 858 178 31 0 chrY 20220982 20221145 -31292439 + HERVL-A1 LTR ERVL 1 168 -5486 846 100 0 0 chrY 20221149 20221269 -31292315 + MLT2A2 LTR ERVL 1 120 -333 9900 132 5 6 chrY 20221269 20223877 -31289707 + HERVL-A1 LTR ERVL 186 2837 -2817 25 31 0 0 chrY 20224129 20224161 -31289423 + AT_rich Low_complexity Low_complexity 1 32 0 332 281 149 36 chrY 20224275 20225075 -31288509 + L1M4 LINE L1 2678 3567 -2579 1030 239 102 11 chrY 20225241 20225505 -31288079 - MSTA LTR MaLR 0 428 141 4543 102 21 128 chrY 20225524 20226445 -31287139 - LTR12 LTR ERV1 0 826 5 1881 211 32 39 chrY 20226461 20227045 -31286539 - pTR5 LTR ERV1 -1094 1344 765 493 148 38 10 chrY 20227047 20227153 -31286431 - MSTA LTR MaLR -260 115 1 419 283 31 62 chrY 20227385 20227643 -31285941 + L1M4 LINE L1 4051 4300 -1846 579 196 19 0 chrY 20227765 20227872 -31285712 + MER2 DNA MER2_type 2 110 -235 1473 266 41 62 chrY 20228091 20228392 -31285192 + MER66B-int LTR ERV1 4548 4854 -2902 2089 138 0 0 chrY 20228392 20228688 -31284896 - AluSc SINE Alu -13 296 1 1473 266 41 62 chrY 20228688 20229418 -31284166 + MER66B-int LTR ERV1 4854 6030 -1726 2042 114 3 39 chrY 20229418 20229725 -31283859 - AluY SINE Alu -15 296 1 1473 266 41 62 chrY 20229725 20229871 -31283713 + MER66B-int LTR ERV1 6030 6177 -1579 1506 223 28 6 chrY 20230005 20230328 -31283256 + MER66B-int LTR ERV1 6347 6676 0 1306 245 73 34 chrY 20230328 20230794 -31282790 + MER66B LTR ERV1 1 484 -2 522 237 104 36 chrY 20230845 20231153 -31282431 + MER96B DNA MER1_type? 24 352 -65 1996 238 61 14 chrY 20231170 20231820 -31281764 - L1MC1 LINE L1 -22 6311 5593 239 267 142 0 chrY 20231845 20231965 -31281619 - L1MC1 LINE L1 -834 5510 5374 688 168 49 0 chrY 20231969 20232112 -31281472 + FRAM SINE Alu 25 174 -2 273 129 43 29 chrY 20232122 20232192 -31281392 + GA-rich Low_complexity Low_complexity 4 74 0 1415 191 31 10 chrY 20232300 20232594 -31280990 - AluSg1 SINE Alu -9 300 1 385 245 32 0 chrY 20232888 20232982 -31280602 + FLAM_C SINE Alu 13 109 -24 337 134 15 45 chrY 20232994 20233061 -31280523 - MER1B DNA MER1_type -13 326 262 1301 186 49 4 chrY 20233207 20233470 -31280114 - MER1B DNA MER1_type -64 275 1 245 110 98 73 chrY 20233535 20233580 -31280004 + L1MA7 LINE L1 6179 6228 -63 701 231 140 34 chrY 20233580 20233844 -31279740 + AluSq SINE Alu 2 293 -10 245 110 98 73 chrY 20233844 20233880 -31279704 + L1MA7 LINE L1 6228 6262 -29 28 48 0 0 chrY 20234315 20234357 -31279227 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chrY 20235919 20235943 -31277641 + AT_rich Low_complexity Low_complexity 1 24 0 2174 61 75 0 chrY 20236300 20236580 -31277004 - AluSp SINE Alu -12 301 1 1793 155 0 0 chrY 20236609 20236873 -31276711 - AluSc SINE Alu -45 264 1 282 87 0 0 chrY 20237052 20237098 -31276486 + (T)n Simple_repeat Simple_repeat 1 46 0 2198 92 0 7 chrY 20237227 20237520 -31276064 + AluY SINE Alu 1 291 -20 973 259 27 44 chrY 20237970 20238267 -31275317 - AluJo SINE Alu -10 292 1 21 0 0 0 chrY 20238382 20238403 -31275181 + AT_rich Low_complexity Low_complexity 1 21 0 2046 245 136 16 chrY 20239719 20240483 -31273101 - L1MB5 LINE L1 -13 6161 5306 2031 31 0 27 chrY 20241428 20241686 -31271898 + L1PA3 LINE L1 5905 6155 0 690 168 21 28 chrY 20241857 20242000 -31271584 + AluSp/q SINE Alu 171 312 -1 1551 184 28 7 chrY 20242879 20243161 -31270423 - AluSg SINE Alu -20 290 3 1221 230 21 7 chrY 20243664 20243955 -31269629 + AluJb SINE Alu 3 297 -5 769 250 71 44 chrY 20244238 20244379 -31269205 - MLT1A1 LTR MaLR -7 421 285 2055 136 3 3 chrY 20244379 20244687 -31268897 - AluSc SINE Alu -1 308 1 769 250 71 44 chrY 20244687 20244829 -31268755 - MLT1A1 LTR MaLR -143 285 80 685 260 125 34 chrY 20244838 20245254 -31268330 - LTR65-int LTR ERV1 -258 4678 4225 315 235 24 0 chrY 20245239 20245324 -31268260 - LTR65-int LTR ERV1 -817 5514 5428 * 230 91 101 0 chrY 20245324 20245423 -31268161 + (TA)n Simple_repeat Simple_repeat 1 109 0 1136 212 13 9 chrY 20245447 20245555 -31268029 - AluJb SINE Alu -80 232 126 222 37 0 0 chrY 20245555 20245582 -31268002 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1136 212 13 9 chrY 20245582 20245704 -31267880 - AluJb SINE Alu -186 126 1 1360 231 46 46 chrY 20245725 20246157 -31267427 - LTR65-int LTR ERV1 -829 4107 3676 1867 173 0 0 chrY 20246253 20246553 -31267031 - AluSx SINE Alu -12 300 1 2003 238 72 42 chrY 20246614 20247637 -31265947 - LTR65-int LTR ERV1 -3570 1366 287 190 182 45 0 chrY 20247668 20247756 -31265828 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 300 27 0 0 chrY 20249880 20249917 -31263667 + (A)n Simple_repeat Simple_repeat 1 37 0 245 352 24 32 chrY 20250063 20250188 -31263396 + L1M3de LINE L1 723 846 -6283 242 318 11 91 chrY 20250753 20250841 -31262743 + L1M3de LINE L1 767 1496 -5633 2109 307 44 57 chrY 20250863 20251996 -31261588 + L1M3de LINE L1 286 2051 -4602 22 35 0 0 chrY 20252007 20252036 -31261548 + AT_rich Low_complexity Low_complexity 1 29 0 1924 142 3 10 chrY 20252036 20252346 -31261238 + AluSx SINE Alu 1 308 -4 1543 264 103 78 chrY 20252376 20253146 -31260438 + L1M3de LINE L1 1 789 -6420 891 276 22 77 chrY 20253161 20253563 -31260021 + L1M3de LINE L1 1553 1932 -5277 372 332 142 45 chrY 20253576 20253977 -31259607 - L1MEc LINE L1 -5918 478 39 1287 174 83 8 chrY 20254374 20254638 -31258946 - AluSg SINE Alu -15 285 2 1348 292 83 11 chrY 20255020 20255644 -31257940 - LTR65 LTR ERV1 0 669 1 1384 206 14 4 chrY 20256460 20256736 -31256848 + AluSx SINE Alu 13 291 -21 484 66 0 0 chrY 20256747 20256846 -31256738 + L1PA5 LINE L1 6078 6176 0 844 204 0 24 chrY 20256883 20257050 -31256534 - FRAM SINE Alu -7 169 7 306 292 22 0 chrY 20257634 20257723 -31255861 + L2 LINE L2 3223 3313 0 23 0 0 0 chrY 20257835 20257858 -31255726 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrY 20259124 20259145 -31254439 + AT_rich Low_complexity Low_complexity 1 21 0 444 290 36 0 chrY 20260870 20261008 -31252576 - MIR SINE MIR -25 237 95 1126 252 50 28 chrY 20261915 20262272 -31251312 - MLT1E LTR MaLR -2 591 227 1488 212 3 24 chrY 20262391 20262684 -31250900 + AluJo SINE Alu 7 293 -19 236 326 68 14 chrY 20262701 20262848 -31250736 - L2 LINE L2 -2521 793 639 387 356 27 11 chrY 20262904 20263092 -31250492 - L2 LINE L2 -2836 478 288 1262 260 43 24 chrY 20263801 20264224 -31249360 - MLT1C LTR MaLR 0 467 37 180 0 0 0 chrY 20264225 20264245 -31249339 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chrY 20265176 20265212 -31248372 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chrY 20265234 20265276 -31248308 + AT_rich Low_complexity Low_complexity 1 42 0 2225 110 0 0 chrY 20265923 20266224 -31247360 + AluY SINE Alu 1 301 -10 207 0 0 0 chrY 20266541 20266564 -31247020 + (A)n Simple_repeat Simple_repeat 1 23 0 21 71 0 0 chrY 20267070 20267112 -31246472 + AT_rich Low_complexity Low_complexity 1 42 0 1256 195 22 106 chrY 20267394 20267799 -31245785 + MLT1B LTR MaLR 1 371 -19 322 282 24 0 chrY 20268587 20268672 -31244912 + MIR SINE MIR 49 135 -127 428 286 24 8 chrY 20268838 20268964 -31244620 - MIR3 SINE MIR -15 193 66 25 75 0 0 chrY 20269580 20269633 -31243951 + AT_rich Low_complexity Low_complexity 1 53 0 1768 146 20 3 chrY 20270033 20270328 -31243256 - AluSp SINE Alu -13 300 1 301 348 74 57 chrY 20270718 20271175 -31242409 + L2 LINE L2 2831 3295 -18 3485 128 30 0 chrY 20271297 20271860 -31241724 - LTR19B LTR ERV1 0 580 1 1202 160 4 27 chrY 20271861 20272086 -31241498 - HERVFH19I LTR ERV1 -1 7718 7499 * 4348 170 30 19 chrY 20272081 20273327 -31240257 - LTR19-int LTR ERV1 -332 6884 3788 10423 51 1 0 chrY 20273403 20275474 -31238110 - L1PA4 LINE L1 0 6155 4081 546 203 0 0 chrY 20275479 20275627 -31237957 + CT-rich Low_complexity Low_complexity 1 148 0 25 65 0 0 chrY 20277031 20277077 -31236507 + AT_rich Low_complexity Low_complexity 1 46 0 40517 68 6 1 chrY 20277349 20283468 -31230116 + L1PA4 LINE L1 4 6153 -2 21 36 0 0 chrY 20283584 20283612 -31229972 + AT_rich Low_complexity Low_complexity 1 28 0 1698 184 7 0 chrY 20283612 20283895 -31229689 - AluSx SINE Alu -25 287 3 2001 148 10 7 chrY 20284527 20284837 -31228747 + AluY SINE Alu 1 311 0 26 0 0 0 chrY 20285108 20285134 -31228450 + AT_rich Low_complexity Low_complexity 1 26 0 213 132 0 0 chrY 20287215 20287253 -31226331 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 371 130 0 14 chrY 20287571 20287640 -31225944 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 385 169 0 26 chrY 20288951 20289028 -31224556 + L1MA9 LINE L1 6078 6152 -160 212 0 36 0 chrY 20289030 20289058 -31224526 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chrY 20289211 20289235 -31224349 + AT_rich Low_complexity Low_complexity 1 24 0 347 335 52 24 chrY 20289571 20289819 -31223765 + L1MC4a LINE L1 4415 4669 -1477 1731 145 32 7 chrY 20289894 20290221 -31223363 - AluSq SINE Alu 0 334 1 1870 140 3 0 chrY 20290605 20290890 -31222694 + AluSc SINE Alu 1 286 -23 180 92 0 108 chrY 20290893 20290958 -31222626 + (TAAAAA)n Simple_repeat Simple_repeat 4 61 0 428 297 72 49 chrY 20291038 20291424 -31222160 + L1MC4a LINE L1 5291 5683 -481 199 0 0 61 chrY 20291687 20291720 -31221864 + (TA)n Simple_repeat Simple_repeat 1 31 0 588 272 87 11 chrY 20291939 20292123 -31221461 - MIR SINE MIR -24 238 41 394 244 110 50 chrY 20292293 20292367 -31221217 + L1M4c LINE L1 2300 2368 -4014 3437 130 34 4 chrY 20292367 20292930 -31220654 + LTR19B LTR ERV1 1 580 0 394 244 110 50 chrY 20292930 20293167 -31220417 + L1M4c LINE L1 2368 2642 -3740 784 222 110 156 chrY 20293287 20293787 -31219797 + MLT2B1 LTR ERVL 5 481 -39 259 278 22 11 chrY 20293803 20293893 -31219691 - L1MC4 LINE L1 -1339 6703 6613 382 291 104 64 chrY 20294387 20294638 -31218946 + L1MC4a LINE L1 5652 5912 -1896 257 258 209 33 chrY 20296045 20296227 -31217357 + L2 LINE L2 2196 2409 -905 21 36 0 0 chrY 20296643 20296671 -31216913 + AT_rich Low_complexity Low_complexity 1 28 0 186 306 32 16 chrY 20297581 20297643 -31215941 - MER5A DNA MER1_type -73 116 54 265 307 60 0 chrY 20298119 20298269 -31215315 + L1M3 LINE L1 5366 5524 -647 28 29 0 0 chrY 20298377 20298412 -31215172 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chrY 20298543 20298573 -31215011 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chrY 20298661 20298695 -31214889 + AT_rich Low_complexity Low_complexity 1 34 0 35 0 0 0 chrY 20301652 20301687 -31211897 + AT_rich Low_complexity Low_complexity 1 35 0 545 235 0 0 chrY 20302326 20302445 -31211139 + MER41E LTR ERV1 1 119 -393 26 30 0 0 chrY 20304345 20304378 -31209206 + AT_rich Low_complexity Low_complexity 1 33 0 2302 82 0 3 chrY 20305899 20306218 -31207366 - L1PA6 LINE L1 0 6154 5837 749 69 0 0 chrY 20306218 20306319 -31207265 + L1P3 LINE L1 5432 5532 -622 1583 122 87 14 chrY 20306694 20306982 -31206602 - LTR1 LTR ERV1 -104 681 373 299 262 56 24 chrY 20309991 20310117 -31203467 + MLT1F LTR MaLR 386 515 -27 917 259 134 0 chrY 20310585 20310847 -31202737 + AluSx SINE Alu 1 297 -5 1469 201 0 30 chrY 20310914 20311217 -31202367 + AluSx SINE Alu 12 305 -7 323 145 14 0 chrY 20311222 20311291 -31202293 + GA-rich Low_complexity Low_complexity 4 73 0 367 257 7 118 chrY 20311919 20312063 -31201521 - FLAM_C SINE Alu -5 128 1 281 307 10 10 chrY 20312180 20312281 -31201303 + MLT1E LTR MaLR 361 461 -132 270 95 0 0 chrY 20312296 20312338 -31201246 + (TG)n Simple_repeat Simple_repeat 2 43 0 820 341 37 16 chrY 20313129 20313560 -31200024 - L1M3b LINE L1 -5788 493 54 1586 189 0 36 chrY 20313650 20313952 -31199632 + AluSg SINE Alu 1 291 -19 1337 213 50 70 chrY 20314156 20314597 -31198987 - MSTB1 LTR MaLR 0 432 1 1684 166 6 56 chrY 20314929 20315249 -31198335 + AluSx SINE Alu 1 304 -8 244 337 47 30 chrY 20315278 20315524 -31198060 - L1M3de LINE L1 -5301 1352 605 233 336 0 8 chrY 20315638 20315763 -31197821 - L1M3d LINE L1 -5758 133 10 268 172 11 0 chrY 20315798 20315863 -31197721 - L1MA4 LINE L1 -11 6289 6223 391 254 43 0 chrY 20315865 20316012 -31197572 + L1MA4 LINE L1 5999 6157 -145 1265 226 8 15 chrY 20316013 20316278 -31197306 - AluSx SINE Alu -47 265 3 1318 201 35 24 chrY 20316750 20317039 -31196545 + AluSg SINE Alu 1 292 -18 714 209 34 33 chrY 20318951 20319271 -31194313 + L1M4 LINE L1 5276 5601 -583 1090 216 98 9 chrY 20319469 20319602 -31193982 + L1MB5 LINE L1 5313 5433 -747 225 0 0 0 chrY 20319602 20319627 -31193957 + (CA)n Simple_repeat Simple_repeat 1 25 0 1090 216 98 9 chrY 20319627 20319841 -31193743 + L1MB5 LINE L1 5433 5691 -489 1031 260 51 9 chrY 20319896 20320231 -31193353 + L1MB5 LINE L1 5817 6165 -9 1424 171 91 0 chrY 20321806 20322080 -31191504 + AluSc SINE Alu 1 299 -10 202 200 89 0 chrY 20322246 20322291 -31191293 - L2 LINE L2 -12 3260 3212 1610 165 4 4 chrY 20322579 20322845 -31190739 - AluSc SINE Alu -23 286 21 213 39 0 0 chrY 20324367 20324393 -31189191 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 65 0 0 chrY 20324544 20324590 -31188994 + AT_rich Low_complexity Low_complexity 1 46 0 7447 35 1 0 chrY 20324661 20325840 -31187744 + L1PA3 LINE L1 4976 6155 0 21 36 0 0 chrY 20325845 20325873 -31187711 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrY 20326013 20326048 -31187536 + AT_rich Low_complexity Low_complexity 1 35 0 782 272 0 25 chrY 20326112 20326351 -31187233 - AluJb SINE Alu -78 234 2 371 132 0 44 chrY 20326542 20326610 -31186974 + MER1B DNA MER1_type 211 275 -64 245 174 0 0 chrY 20326776 20326822 -31186762 + MER1B DNA MER1_type 272 317 -16 517 234 9 0 chrY 20326833 20326940 -31186644 - FLAM_C SINE Alu -33 110 3 5346 153 123 23 chrY 20329950 20331116 -31182468 + pTR5 LTR ERV1 743 2025 -413 279 235 31 20 chrY 20331116 20331214 -31182370 + LTR30 LTR ERV1 544 642 -80 1457 98 5 0 chrY 20331224 20331439 -31182145 + pTR5 LTR ERV1 177 392 -2046 735 162 0 7 chrY 20333489 20333513 -31180071 - AluSx SINE Alu -3 307 284 300 70 0 0 chrY 20333513 20333556 -31180028 + (TG)n Simple_repeat Simple_repeat 2 44 0 735 162 0 7 chrY 20333556 20333667 -31179917 - AluSx SINE Alu -26 284 173 1095 189 0 11 chrY 20333787 20333972 -31179612 - AluSx SINE Alu -129 183 1 23 0 0 0 chrY 20334041 20334064 -31179520 + AT_rich Low_complexity Low_complexity 1 23 0 1969 141 0 0 chrY 20334266 20334549 -31179035 + AluSq SINE Alu 1 283 -30 387 311 125 29 chrY 20335261 20335541 -31178043 + L2 LINE L2 2196 2502 -812 243 61 0 0 chrY 20336672 20336705 -31176879 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 252 284 27 27 chrY 20336810 20336884 -31176700 - MER5A DNA MER1_type -73 116 43 247 329 48 0 chrY 20337354 20337500 -31176084 + L1M3 LINE L1 5365 5517 -654 34 55 0 0 chrY 20337615 20337670 -31175914 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chrY 20338260 20338283 -31175301 + AT_rich Low_complexity Low_complexity 1 23 0 201 158 0 40 chrY 20338587 20338663 -31174921 + (TTAA)n Simple_repeat Simple_repeat 4 76 0 33 25 0 0 chrY 20339668 20339708 -31173876 + AT_rich Low_complexity Low_complexity 1 40 0 32 81 0 0 chrY 20339865 20339939 -31173645 + AT_rich Low_complexity Low_complexity 1 74 0 21 0 0 0 chrY 20340010 20340031 -31173553 + AT_rich Low_complexity Low_complexity 1 21 0 3544 173 46 25 chrY 20340214 20341004 -31172580 + L1PA16 LINE L1 5357 6162 -4 25 31 0 0 chrY 20341005 20341037 -31172547 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chrY 20343049 20343072 -31170512 + AT_rich Low_complexity Low_complexity 1 23 0 546 235 0 0 chrY 20343906 20344025 -31169559 + MER41E LTR ERV1 1 119 -393 2849 170 39 67 chrY 20344369 20345070 -31168514 - LTR1 LTR ERV1 -104 681 1 260 240 116 74 chrY 20345238 20345359 -31168225 - LTR33A LTR ERVL -335 188 63 203 147 0 0 chrY 20346231 20346265 -31167319 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 564 275 42 18 chrY 20346325 20346492 -31167092 - AluJo SINE Alu -132 180 10 211 315 28 28 chrY 20346854 20346962 -31166622 - MIR SINE MIR -24 238 131 29 47 0 0 chrY 20348574 20348617 -31164967 + AT_rich Low_complexity Low_complexity 1 43 0 2503 237 59 63 chrY 20350921 20351948 -31161636 + L1MA8 LINE L1 4555 5568 -723 2394 70 0 0 chrY 20351948 20352247 -31161337 + AluY SINE Alu 2 300 -11 2503 237 59 63 chrY 20352247 20352873 -31160711 + L1MA8 LINE L1 5568 6195 -96 1186 205 96 17 chrY 20354706 20354844 -31158740 + L1MB5 LINE L1 5308 5434 -740 207 0 0 0 chrY 20354844 20354867 -31158717 + (CA)n Simple_repeat Simple_repeat 1 23 0 1186 205 96 17 chrY 20354867 20355084 -31158500 + L1MB5 LINE L1 5434 5691 -483 1185 272 48 6 chrY 20355139 20355470 -31158114 + L1MB5 LINE L1 5817 6161 -13 27 0 0 0 chrY 20356796 20356823 -31156761 + AT_rich Low_complexity Low_complexity 1 27 0 1007 287 28 17 chrY 20356930 20357219 -31156365 + AluJo SINE Alu 1 292 -10 2207 83 6 29 chrY 20357794 20358106 -31155478 - AluY SINE Alu -6 305 1 26 0 0 0 chrY 20358648 20358674 -31154910 + AT_rich Low_complexity Low_complexity 1 26 0 1230 214 48 7 chrY 20358952 20359248 -31154336 - AluSg SINE Alu 0 307 1 216 0 0 0 chrY 20359258 20359282 -31154302 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 225 385 19 0 chrY 20360332 20360436 -31153148 - L2 LINE L2 -287 3026 2921 25 65 0 0 chrY 20360919 20360965 -31152619 + AT_rich Low_complexity Low_complexity 1 46 0 260 246 39 15 chrY 20360988 20361118 -31152466 + (TA)n Simple_repeat Simple_repeat 1 133 0 17506 124 8 11 chrY 20361122 20364570 -31149014 - L1PA7 LINE L1 -3 6151 2706 186 279 0 0 chrY 20364655 20364698 -31148886 - L2 LINE L2 -713 2601 2559 337 238 50 6 chrY 20365018 20365178 -31148406 + (TA)n Simple_repeat Simple_repeat 2 168 0 4372 105 0 40 chrY 20369165 20369772 -31143812 - LTR14C LTR ERVK -2 585 3 15718 93 8 9 chrY 20369775 20370268 -31143316 - HERVK14C LTR ERVK -1 7416 6924 2541 30 0 20 chrY 20370268 20370569 -31143015 - AluY SINE Alu -16 295 1 15718 93 8 9 chrY 20370569 20372205 -31141379 - HERVK14C LTR ERVK -493 6924 5289 * 17648 111 19 3 chrY 20372186 20374701 -31138883 - HERVK14C LTR ERVK -4863 2554 1 4184 118 7 30 chrY 20374701 20375302 -31138282 - LTR14C LTR ERVK 0 587 1 231 320 6 41 chrY 20378828 20379000 -31134584 + CT-rich Low_complexity Low_complexity 1 166 0 180 77 0 0 chrY 20380134 20380160 -31133424 + (GA)n Simple_repeat Simple_repeat 1 26 0 804 234 101 14 chrY 20380162 20380371 -31133213 - AluJb SINE Alu -30 282 56 1109 263 3 7 chrY 20384078 20384363 -31129221 + AluJo SINE Alu 8 291 -21 1957 141 4 0 chrY 20384373 20384650 -31128934 + AluSx SINE Alu 6 283 -29 1885 163 3 0 chrY 20386418 20386719 -31126865 + AluSx SINE Alu 1 302 -10 339 105 0 0 chrY 20393821 20393878 -31119706 + (TG)n Simple_repeat Simple_repeat 2 58 0 2276 102 23 0 chrY 20394409 20394713 -31118871 - AluY SINE Alu 0 311 1 252 147 0 107 chrY 20395868 20395946 -31117638 + (TTCCC)n Simple_repeat Simple_repeat 1 69 0 273 264 84 58 chrY 20396702 20396883 -31116701 - L1M4c LINE L1 -5042 1342 1150 988 240 23 36 chrY 20396883 20397187 -31116397 - AluJb SINE Alu -1 301 2 273 264 84 58 chrY 20397187 20397266 -31116318 - L1M4c LINE L1 -5234 1150 1075 1832 248 120 41 chrY 20397488 20399097 -31114487 - L1MA8 LINE L1 -3 6288 4560 21 0 0 0 chrY 20401135 20401156 -31112428 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chrY 20401403 20401446 -31112138 + AT_rich Low_complexity Low_complexity 1 43 0 535 204 18 9 chrY 20403501 20403614 -31109970 + FLAM_C SINE Alu 10 123 -20 234 0 0 0 chrY 20403615 20403641 -31109943 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 367 205 13 0 chrY 20403673 20403785 -31109799 + FRAM SINE Alu 72 184 0 192 81 81 0 chrY 20404296 20404333 -31109251 + L2 LINE L2 3274 3313 0 248 291 103 8 chrY 20404740 20404857 -31108727 + LTR33A LTR ERVL 95 222 -301 2644 176 33 60 chrY 20404986 20405686 -31107898 + LTR1 LTR ERV1 1 681 -104 603 200 0 0 chrY 20406049 20406164 -31107420 - MER41E LTR ERV1 -397 115 1 21 0 0 0 chrY 20406980 20407001 -31106583 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 20408092 20408113 -31105471 + AT_rich Low_complexity Low_complexity 1 21 0 3494 177 35 24 chrY 20409064 20409862 -31103722 - L1PA16 LINE L1 -3 6163 5357 23 0 0 0 chrY 20409967 20409990 -31103594 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chrY 20410159 20410195 -31103389 + AT_rich Low_complexity Low_complexity 1 36 0 26 50 0 0 chrY 20410349 20410389 -31103195 + AT_rich Low_complexity Low_complexity 1 40 0 27 29 0 0 chrY 20411638 20411672 -31101912 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chrY 20412006 20412035 -31101549 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrY 20412134 20412158 -31101426 + AT_rich Low_complexity Low_complexity 1 24 0 241 333 38 0 chrY 20412443 20412602 -31100982 - L1M3 LINE L1 -654 5517 5353 236 127 32 63 chrY 20413232 20413295 -31100289 + A-rich Low_complexity Low_complexity 3 63 0 383 311 125 29 chrY 20414412 20414692 -31098892 - L2 LINE L2 -812 2502 2196 1668 157 30 0 chrY 20415404 20415672 -31097912 - AluSq SINE Alu -30 283 8 1657 176 0 10 chrY 20417385 20417686 -31095898 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 20418235 20418263 -31095321 + AT_rich Low_complexity Low_complexity 1 28 0 812 264 25 29 chrY 20419162 20419404 -31094180 - AluJo SINE Alu -71 241 1 1629 240 150 17 chrY 20420866 20421525 -31092059 - L1MB5 LINE L1 -13 6161 5415 277 143 0 0 chrY 20421539 20421588 -31091996 + L1PA6 LINE L1 6106 6154 0 261 223 109 9 chrY 20421589 20421732 -31091852 - L1MB5 LINE L1 -746 5423 5254 445 203 20 60 chrY 20421892 20422076 -31091508 - L1M4 LINE L1 -583 5601 5415 275 106 0 0 chrY 20422090 20422137 -31091447 + L1PA6 LINE L1 6106 6152 -2 243 204 80 11 chrY 20422164 20422252 -31091332 - L1M4 LINE L1 -781 5397 5304 610 190 77 101 chrY 20422444 20422638 -31090946 - L1M4 LINE L1 -577 5601 5399 317 83 0 0 chrY 20422638 20422686 -31090898 + L1PA6 LINE L1 6106 6153 -1 610 190 77 101 chrY 20422686 20422828 -31090756 - L1M4 LINE L1 -779 5399 5255 482 191 7 50 chrY 20423029 20423170 -31090414 - L1M4 LINE L1 -625 5549 5415 263 143 0 0 chrY 20423184 20423233 -31090351 + L1PA6 LINE L1 6106 6154 0 274 219 67 9 chrY 20423234 20423339 -31090245 - L1M4 LINE L1 -755 5423 5313 542 195 29 51 chrY 20423533 20423765 -31089819 - L1M4 LINE L1 -583 5601 5365 1268 216 32 11 chrY 20425775 20426058 -31087526 - AluSg SINE Alu -11 289 1 1462 194 3 14 chrY 20426524 20426808 -31086776 + AluSx SINE Alu 7 287 -25 1229 229 7 45 chrY 20426874 20427184 -31086400 - AluJo SINE Alu -13 299 2 450 273 35 0 chrY 20427231 20427403 -31086181 - L1MA4 LINE L1 -124 6176 5999 255 154 17 0 chrY 20427405 20427466 -31086118 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 20427478 20427526 -31086058 + CT-rich Low_complexity Low_complexity 3 50 0 1380 223 3 7 chrY 20427555 20427847 -31085737 - AluSx SINE Alu -17 295 5 926 214 0 0 chrY 20427887 20428074 -31085510 - AluSg/x SINE Alu -1 311 125 248 279 71 36 chrY 20428573 20428713 -31084871 - MLT1F LTR MaLR -28 514 370 1798 163 0 0 chrY 20429183 20429466 -31084118 - AluSq SINE Alu -30 283 1 1589 173 14 3 chrY 20429763 20430046 -31083538 + AluSx SINE Alu 1 286 -26 510 222 0 0 chrY 20435064 20435163 -31078421 + AluJ/FLAM SINE Alu 3 101 -211 245 174 0 0 chrY 20435182 20435228 -31078356 - MER1B DNA MER1_type -16 317 272 371 132 0 44 chrY 20435394 20435462 -31078122 - MER1B DNA MER1_type -64 275 211 942 224 76 22 chrY 20435653 20435930 -31077654 + AluJb SINE Alu 2 293 -9 414 0 0 0 chrY 20436406 20436452 -31077132 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 82 0 0 chrY 20436481 20436530 -31077054 + AT_rich Low_complexity Low_complexity 1 49 0 1849 145 3 22 chrY 20437816 20438127 -31075457 + AluSc SINE Alu 2 306 -3 1870 133 7 3 chrY 20438605 20438907 -31074677 - AluSc SINE Alu -6 303 1 1657 176 0 10 chrY 20440924 20441225 -31072359 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 20441774 20441802 -31071782 + AT_rich Low_complexity Low_complexity 1 28 0 812 264 25 29 chrY 20442701 20442943 -31070641 - AluJo SINE Alu -71 241 1 1614 241 150 17 chrY 20444405 20445064 -31068520 - L1MB5 LINE L1 -13 6161 5415 277 143 0 0 chrY 20445078 20445127 -31068457 + L1PA6 LINE L1 6106 6154 0 261 223 109 9 chrY 20445128 20445271 -31068313 - L1MB5 LINE L1 -746 5423 5254 445 203 20 60 chrY 20445431 20445615 -31067969 - L1M4 LINE L1 -583 5601 5415 275 106 0 0 chrY 20445629 20445676 -31067908 + L1PA6 LINE L1 6106 6152 -2 243 204 80 11 chrY 20445703 20445791 -31067793 - L1M4 LINE L1 -787 5397 5304 740 191 119 90 chrY 20445983 20446177 -31067407 - L1M4 LINE L1 -577 5601 5391 343 83 0 0 chrY 20446177 20446225 -31067359 + L1PA6 LINE L1 6106 6153 -1 740 191 119 90 chrY 20446225 20446367 -31067217 - L1M4 LINE L1 -787 5391 5255 533 208 23 45 chrY 20446511 20446709 -31066875 - L1MC/D LINE L1 -587 5597 5414 289 143 0 0 chrY 20446723 20446772 -31066812 + L1PA6 LINE L1 6106 6154 0 324 219 61 26 chrY 20446773 20446887 -31066697 - L1MC/D LINE L1 -755 5423 5306 593 213 83 53 chrY 20447072 20447400 -31066184 - L1M4 LINE L1 -577 5601 5254 1377 216 32 11 chrY 20449314 20449597 -31063987 - AluSg SINE Alu -11 289 1 1578 198 3 14 chrY 20450059 20450347 -31063237 + AluSx SINE Alu 3 287 -15 1385 226 7 45 chrY 20450413 20450723 -31062861 - AluJo SINE Alu -3 299 2 525 273 35 0 chrY 20450770 20450942 -31062642 - L1MA4 LINE L1 -124 6176 5999 281 154 17 0 chrY 20450944 20451005 -31062579 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 20451017 20451065 -31062519 + CT-rich Low_complexity Low_complexity 3 50 0 1343 223 3 7 chrY 20451094 20451386 -31062198 - AluSx SINE Alu -17 295 5 865 215 5 0 chrY 20451426 20451612 -31061972 - AluSg/x SINE Alu -1 311 125 303 279 71 36 chrY 20452111 20452251 -31061333 - MLT1F LTR MaLR -28 514 370 1794 163 0 0 chrY 20452721 20453004 -31060580 - AluSq SINE Alu -30 283 1 1582 173 14 3 chrY 20453301 20453584 -31060000 + AluSx SINE Alu 1 286 -26 548 222 0 0 chrY 20458600 20458699 -31054885 + AluJ/FLAM SINE Alu 3 101 -211 263 174 0 0 chrY 20458718 20458764 -31054820 - MER1B DNA MER1_type -16 317 272 401 132 0 44 chrY 20458930 20458998 -31054586 - MER1B DNA MER1_type -64 275 211 281 161 226 66 chrY 20459088 20459189 -31054395 + L1MA7 LINE L1 6103 6233 -58 1046 224 76 22 chrY 20459189 20459466 -31054118 + AluJb SINE Alu 2 293 -9 281 161 226 66 chrY 20459466 20459501 -31054083 + L1MA7 LINE L1 6233 6261 -30 414 0 0 0 chrY 20459942 20459988 -31053596 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 82 0 0 chrY 20460017 20460066 -31053518 + AT_rich Low_complexity Low_complexity 1 49 0 1837 145 3 22 chrY 20461352 20461663 -31051921 + AluSc SINE Alu 2 306 -3 1882 133 7 3 chrY 20462141 20462443 -31051141 - AluSc SINE Alu -6 303 1 1637 176 0 10 chrY 20464460 20464761 -31048823 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 20465310 20465338 -31048246 + AT_rich Low_complexity Low_complexity 1 28 0 901 266 25 29 chrY 20466237 20466478 -31047106 - AluJo SINE Alu -71 241 2 1239 257 48 6 chrY 20467941 20468272 -31045312 - L1MB5 LINE L1 -13 6161 5817 1026 206 88 74 chrY 20468328 20468614 -31044970 - L1MB5 LINE L1 -490 5690 5394 305 143 0 0 chrY 20468614 20468663 -31044921 + L1PA6 LINE L1 6106 6154 0 1026 206 88 74 chrY 20468663 20468807 -31044777 - L1MB5 LINE L1 -786 5394 5254 597 204 80 112 chrY 20468967 20469165 -31044419 - L1M4 LINE L1 -577 5601 5404 304 106 0 0 chrY 20469165 20469212 -31044372 + L1PA6 LINE L1 6106 6152 -2 597 204 80 112 chrY 20469212 20469359 -31044225 - L1M4 LINE L1 -774 5404 5254 740 191 119 90 chrY 20469519 20469713 -31043871 - L1M4 LINE L1 -577 5601 5391 343 83 0 0 chrY 20469713 20469761 -31043823 + L1PA6 LINE L1 6106 6153 -1 740 191 119 90 chrY 20469761 20469901 -31043683 - L1M4 LINE L1 -787 5391 5257 533 208 23 45 chrY 20470047 20470245 -31043339 - L1MC/D LINE L1 -587 5597 5414 289 143 0 0 chrY 20470259 20470308 -31043276 + L1PA6 LINE L1 6106 6154 0 324 219 61 26 chrY 20470309 20470423 -31043161 - L1MC/D LINE L1 -755 5423 5306 593 213 83 53 chrY 20470608 20470936 -31042648 - L1M4 LINE L1 -577 5601 5254 1377 216 32 11 chrY 20472851 20473134 -31040450 - AluSg SINE Alu -11 289 1 1578 198 3 14 chrY 20473596 20473884 -31039700 + AluSx SINE Alu 3 287 -15 1385 226 7 45 chrY 20473950 20474260 -31039324 - AluJo SINE Alu -3 299 2 525 273 35 0 chrY 20474307 20474479 -31039105 - L1MA4 LINE L1 -124 6176 5999 281 154 17 0 chrY 20474481 20474542 -31039042 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 20474554 20474602 -31038982 + CT-rich Low_complexity Low_complexity 3 50 0 1337 243 28 3 chrY 20474631 20474786 -31038798 - AluSx SINE Alu -7 295 128 366 23 0 0 chrY 20474786 20474829 -31038755 + (TG)n Simple_repeat Simple_repeat 2 44 0 1337 243 28 3 chrY 20474829 20474961 -31038623 - AluSx SINE Alu -174 128 1 898 243 5 0 chrY 20474997 20475211 -31038373 - AluSg/x SINE Alu -1 309 95 297 273 79 36 chrY 20475679 20475818 -31037766 - MLT1F LTR MaLR -28 514 370 806 78 0 0 chrY 20481070 20481173 -31032411 - L1P3 LINE L1 -622 5532 5430 2377 89 9 3 chrY 20481173 20481487 -31032097 + L1PA6 LINE L1 5837 6154 0 444 183 0 0 chrY 20482576 20482669 -31030915 + GA-rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chrY 20482907 20482928 -31030656 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chrY 20484585 20484622 -31028962 + (TA)n Simple_repeat Simple_repeat 1 37 0 511 300 30 4 chrY 20484808 20485038 -31028546 + L1M4 LINE L1 4064 4299 -1847 30 45 0 0 chrY 20485548 20485592 -31027992 + AT_rich Low_complexity Low_complexity 1 44 0 1926 142 10 0 chrY 20485604 20485893 -31027691 - AluY SINE Alu -19 292 1 21 0 0 0 chrY 20485979 20486000 -31027584 + AT_rich Low_complexity Low_complexity 1 21 0 748 168 147 19 chrY 20486262 20486453 -31027131 + AluJb SINE Alu 19 289 -23 1859 162 0 0 chrY 20486515 20486799 -31026785 + AluSx SINE Alu 1 284 -28 532 256 47 23 chrY 20487070 20487242 -31026342 + AluJo SINE Alu 121 296 -16 698 264 57 7 chrY 20487249 20487545 -31026039 + L1M4 LINE L1 4403 4713 -1433 262 24 24 73 chrY 20487675 20487716 -31025868 - MER9 LTR ERVK -472 39 1 11211 108 20 28 chrY 20487718 20489794 -31023790 - HERVK9 LTR ERVK -3 8033 3954 15537 90 47 43 chrY 20489896 20491963 -31021621 - HERVK9 LTR ERVK -3340 2576 402 180 330 21 21 chrY 20491963 20492060 -31021524 - L3 LINE CR1 -28 1549 1453 15537 90 47 43 chrY 20492060 20492285 -31021299 - HERVK9 LTR ERVK -5514 402 179 396 0 0 0 chrY 20492610 20492654 -31020930 + (TA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chrY 20494311 20494332 -31019252 + AT_rich Low_complexity Low_complexity 1 21 0 444 183 0 0 chrY 20494570 20494663 -31018921 + CT-rich Low_complexity Low_complexity 1 93 0 2338 89 13 3 chrY 20495752 20496067 -31017517 - L1PA6 LINE L1 0 6154 5837 793 79 0 0 chrY 20496067 20496168 -31017416 + L1P3 LINE L1 5432 5532 -622 234 302 48 63 chrY 20501124 20501313 -31012271 + MLT1F LTR MaLR 102 287 -303 293 273 79 36 chrY 20501421 20501560 -31012024 + MLT1F LTR MaLR 370 514 -28 897 243 5 0 chrY 20502028 20502242 -31011342 + AluSg/x SINE Alu 95 309 -1 1228 239 28 3 chrY 20502282 20502410 -31011174 + AluSx SINE Alu 5 128 -174 366 23 0 0 chrY 20502410 20502453 -31011131 + (CA)n Simple_repeat Simple_repeat 2 44 0 1228 239 28 3 chrY 20502453 20502608 -31010976 + AluSx SINE Alu 128 295 -7 231 188 0 0 chrY 20502637 20502685 -31010899 + GA-rich Low_complexity Low_complexity 3 50 0 275 154 17 0 chrY 20502697 20502758 -31010826 - L1MA4 LINE L1 -15 6287 6223 515 273 35 0 chrY 20502760 20502932 -31010652 + L1MA4 LINE L1 5999 6176 -124 1205 229 7 45 chrY 20502979 20503289 -31010295 + AluJo SINE Alu 2 299 -13 1461 194 3 14 chrY 20503355 20503639 -31009945 - AluSx SINE Alu -25 287 7 1247 207 33 11 chrY 20504113 20504388 -31009196 + AluSg SINE Alu 9 289 -21 579 213 83 53 chrY 20506303 20506631 -31006953 + L1M4 LINE L1 5254 5601 -577 313 219 61 26 chrY 20506816 20506930 -31006654 + L1M4 LINE L1 5306 5423 -755 283 143 0 0 chrY 20506931 20506980 -31006604 - L1PA6 LINE L1 0 6154 6106 525 218 23 45 chrY 20506994 20507190 -31006394 + L1M4 LINE L1 5415 5617 -553 716 191 119 90 chrY 20507338 20507478 -31006106 + L1M4 LINE L1 5257 5391 -787 333 83 0 0 chrY 20507478 20507526 -31006058 - L1PA6 LINE L1 -1 6153 6106 716 191 119 90 chrY 20507526 20507720 -31005864 + L1M4 LINE L1 5391 5601 -577 291 243 109 9 chrY 20507880 20508023 -31005561 + L1M3 LINE L1 5254 5423 -746 297 122 0 0 chrY 20508025 20508074 -31005510 - L1PA6 LINE L1 0 6154 6106 478 221 15 54 chrY 20508088 20508272 -31005312 + L1M3 LINE L1 5415 5601 -573 306 210 196 7 chrY 20508432 20508575 -31005009 + L1MB5 LINE L1 5254 5423 -761 298 143 0 0 chrY 20508576 20508625 -31004959 - L1PA6 LINE L1 0 6154 6106 1875 240 150 17 chrY 20508639 20509298 -31004286 + L1MB5 LINE L1 5415 6161 -13 813 262 25 30 chrY 20510761 20510998 -31002586 + AluJo SINE Alu 2 237 -75 21 36 0 0 chrY 20511901 20511929 -31001655 + AT_rich Low_complexity Low_complexity 1 28 0 1674 176 0 10 chrY 20512478 20512779 -31000805 - AluSg SINE Alu -12 298 1 1658 157 30 0 chrY 20514492 20514760 -30998824 + AluSq SINE Alu 8 283 -30 288 311 125 29 chrY 20515472 20515752 -30997832 + L2 LINE L2 2196 2502 -812 703 182 42 0 chrY 20517048 20517191 -30996393 - MIR SINE MIR -93 169 21 341 354 57 0 chrY 20517215 20517373 -30996211 + L1ME LINE L1 5489 5655 -529 1422 193 0 32 chrY 20517397 20517677 -30995907 + AluJo SINE Alu 36 306 -6 2557 236 58 11 chrY 20517790 20518570 -30995014 - L1MEc LINE L1 -2280 3935 3120 402 174 14 0 chrY 20518579 20518648 -30994936 - FLAM SINE Alu -22 121 52 878 247 98 74 chrY 20518715 20519294 -30994290 - L1MEc LINE L1 -4396 2000 1408 584 243 81 23 chrY 20519303 20519476 -30994108 - MLT1J1 LTR MaLR -261 185 3 1315 115 58 24 chrY 20519778 20519986 -30993598 - AluSg SINE Alu -95 215 1 257 196 65 22 chrY 20520342 20520434 -30993150 + L1ME LINE L1 5756 5851 -313 262 213 126 63 chrY 20520505 20520632 -30992952 + LTR50 LTR ERVL 23 157 -638 431 305 122 27 chrY 20520810 20521105 -30992479 + LTR50 LTR ERVL 442 764 -31 378 0 0 0 chrY 20521505 20521547 -30992037 + (TA)n Simple_repeat Simple_repeat 1 42 0 364 229 66 10 chrY 20521826 20521939 -30991645 + AluJo SINE Alu 11 116 -186 186 43 0 0 chrY 20521939 20521962 -30991622 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 364 229 66 10 chrY 20521962 20522075 -30991509 + AluJo SINE Alu 116 282 -20 263 262 119 0 chrY 20523022 20523106 -30990478 + LTR33A LTR ERVL 92 185 -338 365 217 0 22 chrY 20523279 20523371 -30990213 + LTR1 LTR ERV1 1 90 -695 * 623 173 10 0 chrY 20523370 20523474 -30990110 + LTR1 LTR ERV1 577 681 -104 479 292 56 49 chrY 20524398 20524788 -30988796 + SST1 Satellite centromeric 132 524 -1039 392 319 54 56 chrY 20525337 20525729 -30987855 + SST1 Satellite centromeric 1148 1538 -25 388 277 75 56 chrY 20526874 20527195 -30986389 + SST1 Satellite centromeric 132 458 -1105 250 290 89 86 chrY 20527882 20528254 -30985330 + SST1 Satellite centromeric 1163 1535 -28 261 0 0 0 chrY 20528322 20528351 -30985233 + (TG)n Simple_repeat Simple_repeat 2 30 0 438 285 53 51 chrY 20529132 20529525 -30984059 + SST1 Satellite centromeric 207 600 -963 1912 207 27 18 chrY 20531095 20531540 -30982044 + LTR2 LTR ERV1 1 449 0 2859 165 32 31 chrY 20531540 20532430 -30981154 + Harlequin LTR ERV1 1 969 -6500 4275 207 7 10 chrY 20532445 20533262 -30980322 + Harlequin LTR ERV1 1559 2373 -5440 20270 170 3 8 chrY 20533269 20536575 -30977009 + Harlequin LTR ERV1 2507 5797 -2016 9182 214 26 21 chrY 20536686 20538695 -30974889 + Harlequin LTR ERV1 4877 6895 -1 1679 236 25 25 chrY 20538695 20539144 -30974440 + LTR2 LTR ERV1 1 449 0 264 309 67 56 chrY 20539502 20539877 -30973707 + SST1 Satellite centromeric 29 407 -1156 4133 103 3 23 chrY 20539886 20540149 -30973435 + LTR14C LTR ERVK 1 268 -319 1904 139 42 0 chrY 20540149 20540437 -30973147 - AluY SINE Alu -11 300 1 4133 103 3 23 chrY 20540437 20540772 -30972812 + LTR14C LTR ERVK 268 587 0 12197 122 14 4 chrY 20540772 20542532 -30971052 + HERVK14C LTR ERVK 1 1777 -5640 4442 123 15 5 chrY 20542509 20543177 -30970407 + HERVK14C LTR ERVK 1880 2554 -4863 * 15105 109 7 9 chrY 20543158 20545292 -30968292 + HERVK14C LTR ERVK 5289 7417 0 4237 114 2 0 chrY 20545292 20545878 -30967706 + LTR14C LTR ERVK 1 587 0 203 222 12 25 chrY 20546929 20547010 -30966574 + (TG)n Simple_repeat Simple_repeat 1 80 0 207 0 0 0 chrY 20547500 20547523 -30966061 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 478 317 45 40 chrY 20548018 20548441 -30965143 + SST1 Satellite centromeric 97 521 -1042 186 143 0 0 chrY 20549423 20549458 -30964126 + (TG)n Simple_repeat Simple_repeat 2 36 0 250 349 44 31 chrY 20550579 20550969 -30962615 + SST1 Satellite centromeric 207 601 -962 210 136 0 0 chrY 20551892 20551936 -30961648 + (TG)n Simple_repeat Simple_repeat 1 44 0 260 329 52 48 chrY 20553200 20553452 -30960132 + SST1 Satellite centromeric 349 601 -962 227 43 0 87 chrY 20554304 20554350 -30959234 + (TG)n Simple_repeat Simple_repeat 1 42 0 257 287 85 77 chrY 20555477 20555853 -30957731 + SST1 Satellite centromeric 223 601 -962 228 293 0 0 chrY 20556346 20556404 -30957180 + SST1 Satellite centromeric 1162 1219 -344 244 282 109 26 chrY 20556570 20556726 -30956858 + SST1 Satellite centromeric 1374 1542 -21 216 0 0 0 chrY 20557061 20557085 -30956499 + (A)n Simple_repeat Simple_repeat 1 24 0 240 111 0 0 chrY 20557136 20557172 -30956412 + (CA)n Simple_repeat Simple_repeat 1 36 0 293 296 77 72 chrY 20557217 20557606 -30955978 - SST1 Satellite centromeric -25 1538 1148 269 319 64 48 chrY 20558084 20558457 -30955127 - SST1 Satellite centromeric -962 601 223 734 22 11 0 chrY 20559539 20559631 -30953953 + (GAA)n Simple_repeat Simple_repeat 2 94 0 269 127 0 56 chrY 20559685 20559756 -30953828 + (CA)n Simple_repeat Simple_repeat 2 68 0 504 283 76 42 chrY 20560662 20561044 -30952540 - SST1 Satellite centromeric -962 601 207 225 209 15 15 chrY 20562155 20562222 -30951362 + (CA)n Simple_repeat Simple_repeat 2 68 0 226 325 0 0 chrY 20562533 20562610 -30950974 - SST1 Satellite centromeric -324 1239 1163 342 335 57 42 chrY 20563091 20563656 -30949928 - SST1 Satellite centromeric -962 601 29 296 94 19 0 chrY 20564472 20564525 -30949059 + (CA)n Simple_repeat Simple_repeat 1 54 0 377 315 70 62 chrY 20565452 20566020 -30947564 - SST1 Satellite centromeric -962 601 29 241 296 74 0 chrY 20566732 20566813 -30946771 + L2 LINE L2 1832 1918 -1396 352 261 51 36 chrY 20566832 20566970 -30946614 - MER93b LTR ERV1 -120 253 114 223 295 16 0 chrY 20567583 20567644 -30945940 - L2 LINE L2 -6 3266 3205 22 56 0 0 chrY 20568317 20568353 -30945231 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chrY 20569005 20569048 -30944536 + AT_rich Low_complexity Low_complexity 1 43 0 381 315 129 16 chrY 20569411 20569782 -30943802 + L2 LINE L2 1592 2004 -1310 354 328 133 53 chrY 20569752 20570149 -30943435 + L2 LINE L2 2879 3307 -6 * 205 328 94 16 chrY 20570613 20570741 -30942843 + L2 LINE L2 3172 3309 -4 447 68 0 0 chrY 20571271 20571330 -30942254 + (CA)n Simple_repeat Simple_repeat 2 60 0 1266 185 7 70 chrY 20571332 20571630 -30941954 - AluJb SINE Alu -29 283 5 24 0 0 0 chrY 20571645 20571669 -30941915 + AT_rich Low_complexity Low_complexity 1 24 0 1529 194 43 4 chrY 20571669 20571947 -30941637 + AluSg SINE Alu 1 289 -21 459 302 6 39 chrY 20572047 20572229 -30941355 - MER5B DNA MER1_type -1 177 2 1832 160 3 0 chrY 20572589 20572889 -30940695 - AluSq SINE Alu -12 301 1 237 321 12 0 chrY 20572981 20573065 -30940519 + L2 LINE L2 2917 3001 -271 1877 176 0 0 chrY 20573361 20573667 -30939917 - AluY SINE Alu -1 310 5 1606 296 45 35 chrY 20574045 20574334 -30939250 + HAL1 LINE L1 1217 1502 -1005 1774 140 7 65 chrY 20574334 20574642 -30938942 + AluSp SINE Alu 1 290 -23 1606 296 45 35 chrY 20574642 20575115 -30938469 + HAL1 LINE L1 1502 1986 -521 695 265 102 101 chrY 20575208 20575600 -30937984 + L1M4 LINE L1 2905 3300 -2846 4598 22 0 0 chrY 20575600 20576100 -30937484 + L1PA2 LINE L1 5656 6155 0 695 265 102 101 chrY 20576100 20576333 -30937251 + L1M4 LINE L1 3300 3531 -2615 231 246 52 52 chrY 20576380 20576514 -30937070 + L1P LINE L1 3603 3736 -2410 2342 164 6 0 chrY 20576988 20577341 -30936243 + THE1A LTR MaLR 1 355 0 1937 142 0 19 chrY 20577449 20577760 -30935824 - AluSx SINE Alu -7 305 1 264 250 49 83 chrY 20577760 20577792 -30935792 - L2 LINE L2 -855 2459 2427 212 0 36 0 chrY 20577792 20577820 -30935764 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 1512 207 7 0 chrY 20577829 20578100 -30935484 - AluSx SINE Alu -39 273 1 264 250 49 83 chrY 20578100 20578201 -30935383 - L2 LINE L2 -895 2419 2321 21 0 0 0 chrY 20580039 20580060 -30933524 + AT_rich Low_complexity Low_complexity 1 21 0 1854 261 84 24 chrY 20581420 20582305 -30931279 + L1M1 LINE L1 4541 5470 -743 271 178 59 69 chrY 20582425 20582526 -30931058 - MER31-int LTR ERV1 -1214 3722 3623 2575 150 26 100 chrY 20582536 20583189 -30930395 - MER4B LTR ERV1 0 779 4 929 240 60 25 chrY 20583189 20583482 -30930102 - MER31-int LTR ERV1 -1314 5267 3342 735 218 53 69 chrY 20583595 20583898 -30929686 - MER31-int LTR ERV1 -1700 3236 2939 3631 133 4 4 chrY 20583928 20584439 -30929145 - MER9 LTR ERVK 0 511 1 13848 104 11 23 chrY 20584441 20586769 -30926815 - HERVK9 LTR ERVK -3 8033 3711 8059 91 2 4 chrY 20586769 20587840 -30925744 - HERVK9 LTR ERVK -3130 2786 1718 4687 128 6 10 chrY 20587879 20588582 -30925002 - MER11C LTR ERVK -14 1057 358 2123 248 79 40 chrY 20588838 20589807 -30923777 - L1M LINE L1 -753 5393 4403 579 267 64 20 chrY 20589814 20590016 -30923568 - AluJo SINE Alu -16 296 86 1989 137 0 0 chrY 20590248 20590532 -30923052 - AluSx SINE Alu -28 284 1 691 166 145 34 chrY 20590593 20590787 -30922797 - AluJb SINE Alu -23 289 19 2117 117 0 3 chrY 20591156 20591447 -30922137 + AluY SINE Alu 1 290 -21 30 45 0 0 chrY 20591455 20591499 -30922085 + AT_rich Low_complexity Low_complexity 1 44 0 528 348 52 12 chrY 20592019 20592619 -30920965 - L1M4 LINE L1 -1847 4299 3676 440 176 18 29 chrY 20592808 20592978 -30920606 + (TTAGGG)n Simple_repeat Simple_repeat 2 169 0 408 194 0 38 chrY 20593038 20593224 -30920360 + (TTAGGG)n Simple_repeat Simple_repeat 1 179 0 347 152 11 45 chrY 20593242 20593420 -30920164 + (TTAGGG)n Simple_repeat Simple_repeat 4 175 0 281 165 0 63 chrY 20593448 20593606 -30919978 + (TTAGGG)n Simple_repeat Simple_repeat 3 150 0 309 224 3 41 chrY 20593745 20594093 -30919491 + (TTAGGG)n Simple_repeat Simple_repeat 1 334 0 370 226 22 39 chrY 20594274 20594455 -30919129 + (TTAGGG)n Simple_repeat Simple_repeat 3 180 0 271 250 12 24 chrY 20594490 20594832 -30918752 + (TTAGGG)n Simple_repeat Simple_repeat 1 338 0 222 128 0 0 chrY 20594834 20594873 -30918711 + (TTGGGG)n Simple_repeat Simple_repeat 4 42 0 370 213 9 38 chrY 20594934 20595257 -30918327 + (TTAGGG)n Simple_repeat Simple_repeat 1 313 0 621 306 98 4 chrY 20595261 20595526 -30918058 + MER52A LTR ERV1 807 1096 -659 * 2769 314 13 23 chrY 20595494 20596335 -30917249 + MER52A LTR ERV1 923 1755 0 619 248 8 0 chrY 20596344 20596473 -30917111 + MER21B LTR ERV1 247 376 -487 653 257 27 0 chrY 20599202 20599389 -30914195 - L1M4c LINE L1 -4179 2205 2014 1993 125 9 31 chrY 20599391 20599711 -30913873 + AluSp SINE Alu 1 313 0 1683 141 29 54 chrY 20599741 20600054 -30913530 + AluY SINE Alu 1 305 -6 2390 87 0 3 chrY 20600055 20600365 -30913219 + AluY SINE Alu 1 309 -2 3475 266 101 29 chrY 20600393 20602150 -30911434 - L1M4c LINE L1 -4475 1909 25 458 302 116 46 chrY 20602177 20602651 -30910933 - L1M4c LINE L1 -3888 2496 1990 26 0 0 0 chrY 20603202 20603228 -30910356 + AT_rich Low_complexity Low_complexity 1 26 0 231 304 54 83 chrY 20603719 20603887 -30909697 - L2 LINE L2 -386 2928 2766 244 263 0 0 chrY 20603921 20603978 -30909606 + MER20 DNA MER1_type 90 146 -73 1785 148 49 47 chrY 20604952 20605279 -30908305 - MLT2A1 LTR ERVL -57 387 57 2300 26 7 4 chrY 20605279 20605550 -30908034 + AluY SINE Alu 34 305 -6 1785 148 49 47 chrY 20605550 20605608 -30907976 - MLT2A1 LTR ERVL -387 57 1 4146 139 14 29 chrY 20605610 20605875 -30907709 - HERVL-A1 LTR ERVL -2 5652 5385 2087 121 0 14 chrY 20605875 20606172 -30907412 - AluY SINE Alu -18 293 1 4146 139 14 29 chrY 20606172 20606669 -30906915 - HERVL-A1 LTR ERVL -269 5385 4901 15683 147 30 2 chrY 20606681 20609272 -30904312 - HERVL-A1 LTR ERVL -1080 4574 1911 3447 154 7 3 chrY 20609261 20609870 -30903714 - HERVL-A1 LTR ERVL -4168 1486 876 * 2315 171 43 31 chrY 20609870 20610356 -30903228 + LTR22B LTR ERVK 1 492 0 2439 207 2 6 chrY 20610364 20610851 -30902733 + HERVK22 LTR ERVK 8 492 -6345 21922 141 8 14 chrY 20610858 20615720 -30897864 + HERVK22 LTR ERVK 911 5801 -1036 2043 118 0 4 chrY 20615720 20616000 -30897584 + AluY SINE Alu 1 279 -32 225 0 0 0 chrY 20616000 20616025 -30897559 + (TAA)n Simple_repeat Simple_repeat 1 25 0 21922 141 8 14 chrY 20616025 20616078 -30897506 + HERVK22 LTR ERVK 5799 5886 -951 4802 153 3 21 chrY 20616111 20616147 -30897437 + HERVK22 LTR ERVK 5999 6034 -803 7810 90 8 4 chrY 20616147 20617213 -30896371 + MER11C LTR ERVK 1 1071 0 4802 153 3 21 chrY 20617213 20618030 -30895554 + HERVK22 LTR ERVK 6034 6837 0 2131 158 23 66 chrY 20618045 20618531 -30895053 + LTR22B LTR ERVK 28 492 0 1009 127 12 0 chrY 20618531 20618697 -30894887 - HERVL-A1 LTR ERVL -4773 881 714 2222 283 45 0 chrY 20618697 20619269 -30894315 + MER52A LTR ERV1 1156 1753 -2 256 130 87 76 chrY 20619537 20619629 -30893955 - MER20 DNA MER1_type 0 219 127 1616 167 7 35 chrY 20619818 20620106 -30893478 + AluSq SINE Alu 11 290 -23 3146 212 28 18 chrY 20620155 20620915 -30892669 + L1PA10 LINE L1 5401 6167 -1 854 252 138 4 chrY 20621058 20621312 -30892272 - AluSg SINE Alu -16 294 7 31 58 0 0 chrY 20621414 20621466 -30892118 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chrY 20622141 20622164 -30891420 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 20622622 20622650 -30890934 + AT_rich Low_complexity Low_complexity 1 28 0 366 229 0 0 chrY 20622805 20622901 -30890683 + (TA)n Simple_repeat Simple_repeat 2 97 0 231 176 11 22 chrY 20622934 20623012 -30890572 + (TA)n Simple_repeat Simple_repeat 2 80 -11 2519 69 0 0 chrY 20623012 20623318 -30890266 - AluY SINE Alu -5 306 1 231 176 11 22 chrY 20623318 20623330 -30890254 + (TA)n Simple_repeat Simple_repeat 80 91 0 2044 106 31 0 chrY 20623429 20623722 -30889862 + AluY SINE Alu 1 302 -9 207 186 0 0 chrY 20623722 20623765 -30889819 + (TA)n Simple_repeat Simple_repeat 1 43 0 26 0 0 0 chrY 20624812 20624838 -30888746 + AT_rich Low_complexity Low_complexity 1 26 0 2004 116 0 48 chrY 20625361 20625671 -30887913 + AluY SINE Alu 2 296 -15 22 35 0 0 chrY 20627335 20627364 -30886220 + AT_rich Low_complexity Low_complexity 1 29 0 312 250 89 18 chrY 20627411 20627523 -30886061 - L1MC5 LINE L1 -189 7772 7653 488 232 0 0 chrY 20627529 20627624 -30885960 + AluJb SINE Alu 87 181 -131 24 85 0 0 chrY 20627868 20627927 -30885657 + AT_rich Low_complexity Low_complexity 1 59 0 786 288 107 4 chrY 20628022 20628265 -30885319 + AluJb SINE Alu 4 271 -41 2252 217 12 12 chrY 20628943 20629197 -30884387 - MER1A DNA MER1_type -2190 512 256 2860 22 0 0 chrY 20629197 20629514 -30884070 - AluYb8 SINE Alu -1 317 1 2252 217 12 12 chrY 20629514 20629753 -30883831 - MER1A DNA MER1_type -2445 257 19 376 210 0 0 chrY 20629757 20629819 -30883765 + FRAM SINE Alu 63 124 -42 188 67 33 0 chrY 20629820 20629850 -30883734 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 243 86 86 17 chrY 20630728 20630786 -30882798 + CT-rich Low_complexity Low_complexity 4 65 0 1910 128 3 3 chrY 20630791 20631079 -30882505 - AluY SINE Alu -23 288 1 1430 154 0 0 chrY 20631146 20631360 -30882224 + AluSq SINE Alu 81 294 -19 233 272 62 0 chrY 20631364 20631445 -30882139 + MIR SINE MIR 177 262 0 575 267 77 5 chrY 20631708 20631903 -30881681 - MER2 DNA MER2_type -135 210 2 1634 169 14 11 chrY 20632023 20632307 -30881277 - AluSc SINE Alu -22 287 3 2081 117 0 3 chrY 20632592 20632898 -30880686 - AluY SINE Alu 0 305 1 23 0 0 0 chrY 20633549 20633572 -30880012 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 20633922 20633950 -30879634 + AT_rich Low_complexity Low_complexity 1 28 0 336 338 7 14 chrY 20634154 20634296 -30879288 + AluJb SINE Alu 1 141 -161 882 229 17 86 chrY 20634300 20634592 -30878992 + AluJo SINE Alu 11 282 -30 1437 177 100 26 chrY 20634836 20635175 -30878409 - THE1B LTR MaLR 0 364 1 2732 164 80 0 chrY 20635175 20635676 -30877908 - THE1B-int LTR MaLR 0 1580 1040 3653 129 59 68 chrY 20635677 20637064 -30876520 - pTR5 LTR ERV1 0 2438 66 328 290 180 11 chrY 20637646 20637829 -30875755 + L1MC4a LINE L1 5746 5959 -1849 21 0 0 0 chrY 20638173 20638194 -30875390 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrY 20638639 20638666 -30874918 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chrY 20639418 20639447 -30874137 + AT_rich Low_complexity Low_complexity 1 29 0 926 269 94 4 chrY 20639487 20639762 -30873822 + AluSx SINE Alu 2 301 -1 867 224 0 0 chrY 20639853 20640014 -30873570 + AluSc SINE Alu 135 295 -14 3355 201 23 26 chrY 20640081 20640861 -30872723 - L1PA10 LINE L1 -3 6165 5388 282 296 32 16 chrY 20641184 20641309 -30872275 + MER20 DNA MER1_type 93 219 0 344 136 0 45 chrY 20641448 20641504 -30872080 + AluS SINE Alu 221 278 -22 240 86 0 0 chrY 20641504 20641539 -30872045 + (CA)n Simple_repeat Simple_repeat 2 36 0 432 37 0 0 chrY 20641539 20641593 -30871991 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3272 271 23 8 chrY 20641678 20642584 -30871000 - MER52A LTR ERV1 0 1755 905 265 303 101 20 chrY 20642587 20642686 -30870898 - MER52A LTR ERV1 -717 1038 932 * 519 249 70 52 chrY 20642654 20642867 -30870717 - MER52A LTR ERV1 -714 1041 825 257 191 36 12 chrY 20642873 20642957 -30870627 + (TTAAA)n Simple_repeat Simple_repeat 4 89 0 328 256 0 0 chrY 20643006 20643088 -30870496 - MER52A LTR ERV1 -994 761 680 2111 138 87 14 chrY 20643088 20643502 -30870082 + MLT2A1 LTR ERVL 1 444 0 10553 154 10 10 chrY 20643502 20645342 -30868242 + HERVL-A1 LTR ERVL 1 1840 -3814 * 22225 139 8 11 chrY 20645337 20649015 -30864569 + HERVL-A1 LTR ERVL 1988 5653 -1 1811 170 57 16 chrY 20649016 20649386 -30864198 + MLT2A1 LTR ERVL 1 385 -59 201 74 0 0 chrY 20649410 20649437 -30864147 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 171 0 0 chrY 20649442 20649483 -30864101 + (TA)n Simple_repeat Simple_repeat 2 42 0 180 77 0 0 chrY 20649967 20649993 -30863591 + (TAA)n Simple_repeat Simple_repeat 2 27 0 270 245 0 0 chrY 20651273 20651326 -30862258 - MER20 DNA MER1_type -74 145 93 351 349 60 39 chrY 20651360 20651615 -30861969 + L2 LINE L2 2763 3033 -280 284 346 39 26 chrY 20652415 20652568 -30861016 + L1M4 LINE L1 615 769 -5773 964 290 139 12 chrY 20652672 20653556 -30860028 + L1M4 LINE L1 989 1984 -4662 25 51 0 0 chrY 20653778 20653817 -30859767 + AT_rich Low_complexity Low_complexity 1 39 0 364 306 60 25 chrY 20653838 20654037 -30859547 + L1M4 LINE L1 2557 2762 -3884 4302 264 105 25 chrY 20654041 20656077 -30857507 + L1M4c LINE L1 6 2205 -4179 24 0 0 0 chrY 20658420 20658444 -30855140 + AT_rich Low_complexity Low_complexity 1 24 0 614 279 7 0 chrY 20658966 20659106 -30854478 - MER21B LTR ERV1 -487 376 236 2336 294 105 13 chrY 20659123 20660629 -30852955 - MER52A LTR ERV1 -188 1567 4 585 284 147 0 chrY 20660631 20660842 -30852742 - MER21B LTR ERV1 -621 242 1 271 230 149 0 chrY 20660970 20661057 -30852527 + Tigger4(Zombi) DNA MER2_type 1 100 -2631 1437 257 68 63 chrY 20661131 20661806 -30851778 + LTR25 LTR ERV1 32 743 -51 290 185 0 0 chrY 20661798 20661852 -30851732 + LTR25 LTR ERV1 481 534 -260 * 1319 253 48 0 chrY 20661853 20662209 -30851375 + LTR25 LTR ERV1 422 794 0 1729 314 13 2 chrY 20662236 20662785 -30850799 - HUERS-P3 LTR ERV1 -4300 2696 2512 926 255 114 20 chrY 20662904 20663245 -30850339 + LTR25 LTR ERV1 421 793 -1 7528 265 35 46 chrY 20663266 20664394 -30849190 + LTR25-int LTR ERV1 3 1142 -5854 1868 160 3 0 chrY 20664394 20664676 -30848908 - AluSg SINE Alu -27 283 1 7528 265 35 46 chrY 20664676 20666234 -30847350 + LTR25-int LTR ERV1 1142 2660 -4336 3495 318 32 9 chrY 20666278 20667074 -30846510 - HUERS-P3 LTR ERV1 -5885 3034 2197 189 0 0 0 chrY 20667074 20667095 -30846489 + (CAG)n Simple_repeat Simple_repeat 1 21 0 3495 318 32 9 chrY 20667095 20667539 -30846045 - HUERS-P3 LTR ERV1 -6722 2197 1765 815 270 70 42 chrY 20667527 20667634 -30845950 - HUERS-P3 LTR ERV1 -5121 1875 1773 * 312 83 0 0 chrY 20667642 20667690 -30845894 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 1265 204 93 11 chrY 20667690 20667950 -30845634 - AluSx SINE Alu -27 285 1 815 270 70 42 chrY 20667950 20668227 -30845357 - HUERS-P3 LTR ERV1 -5223 1773 1480 3155 251 50 42 chrY 20668282 20668744 -30844840 - HUERS-P3 LTR ERV1 -5629 1367 910 1801 174 10 3 chrY 20668744 20669055 -30844529 + AluSq SINE Alu 1 313 0 3155 251 50 42 chrY 20669055 20669699 -30843885 - HUERS-P3 LTR ERV1 -6086 910 252 2765 220 27 92 chrY 20669800 20670649 -30842935 - LTR25 LTR ERV1 0 794 1 2483 286 14 25 chrY 20670651 20671377 -30842207 + LTR25-int LTR ERV1 2691 3408 -5511 5486 287 26 13 chrY 20671377 20672842 -30840742 + LTR25-int LTR ERV1 3305 4788 -2303 3221 151 2 2 chrY 20672842 20673353 -30840231 + MER9 LTR ERVK 1 511 0 20840 89 1 2 chrY 20673353 20676141 -30837443 + HERVK9 LTR ERVK 1 2786 -3130 13671 105 5 1 chrY 20676141 20678057 -30835527 + HERVK9 LTR ERVK 3711 5634 -282 2209 98 5 2 chrY 20678098 20678401 -30835183 + HERVK9 LTR ERVK 4947 5913 -3 3220 126 12 8 chrY 20678403 20678912 -30834672 + MER9 LTR ERVK 1 511 0 2648 264 90 47 chrY 20678912 20679698 -30833886 + LTR25-int LTR ERV1 4783 5615 -1476 1728 162 0 44 chrY 20679698 20679995 -30833589 + AluSc SINE Alu 1 284 -25 2648 264 90 47 chrY 20679995 20680123 -30833461 + LTR25-int LTR ERV1 5615 5736 -1355 2680 234 16 43 chrY 20680142 20680490 -30833094 + LTR25-int LTR ERV1 3314 3670 -3326 1418 167 130 4 chrY 20680490 20680759 -30832825 - AluSp SINE Alu 0 303 1 2680 234 16 43 chrY 20680759 20681404 -30832180 + LTR25-int LTR ERV1 3670 6996 0 2424 283 42 48 chrY 20681484 20682423 -30831161 + HUERS-P3 LTR ERV1 1759 2691 -6228 215 200 0 17 chrY 20682549 20682609 -30830975 + (TA)n Simple_repeat Simple_repeat 2 60 0 267 114 0 0 chrY 20682610 20682654 -30830930 + (CA)n Simple_repeat Simple_repeat 1 44 0 2372 241 6 101 chrY 20682658 20683463 -30830121 - LTR25 LTR ERV1 -65 729 1 3899 221 47 44 chrY 20683463 20684498 -30829086 - LTR25-int LTR ERV1 0 6996 5965 1989 140 0 32 chrY 20684498 20684813 -30828771 - AluSq SINE Alu -8 305 1 3899 221 47 44 chrY 20684813 20685767 -30827817 - LTR25-int LTR ERV1 -1031 5965 2212 378 165 22 33 chrY 20685738 20685829 -30827755 - LTR25-int LTR ERV1 -2135 3811 3722 * 666 173 39 0 chrY 20685840 20685967 -30827617 - AluY SINE Alu -4 307 176 567 103 0 0 chrY 20685961 20686039 -30827545 - AluSc SINE Alu -226 83 6 * 3557 216 39 28 chrY 20686053 20686765 -30826819 - LTR25-int LTR ERV1 -2556 4649 3947 1521 158 116 0 chrY 20686765 20687024 -30826560 - AluSg1 SINE Alu -19 290 2 3557 216 39 28 chrY 20687024 20687257 -30826327 - LTR25-int LTR ERV1 -3258 3947 3718 252 0 0 0 chrY 20687257 20687285 -30826299 + (TG)n Simple_repeat Simple_repeat 2 29 0 1559 165 32 0 chrY 20687285 20687533 -30826051 - AluSx SINE Alu -27 285 30 3557 216 39 28 chrY 20687533 20687634 -30825950 - LTR25-int LTR ERV1 -3486 3719 1256 1880 229 25 121 chrY 20687641 20687925 -30825659 - LTR25 LTR ERV1 -186 608 423 213 39 0 0 chrY 20687925 20687951 -30825633 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1880 229 25 121 chrY 20687951 20688338 -30825246 - LTR25 LTR ERV1 -371 423 1 3161 298 22 35 chrY 20688338 20689742 -30823842 - LTR25-int LTR ERV1 -4270 2726 1914 505 277 38 13 chrY 20689737 20689943 -30823641 - LTR25-int LTR ERV1 -5198 1798 1511 * 1710 275 27 13 chrY 20689941 20690392 -30823192 + LTR25-int LTR ERV1 3216 3672 -3419 7873 284 30 17 chrY 20690399 20692701 -30820883 + LTR25-int LTR ERV1 4122 6421 -670 732 283 5 0 chrY 20692715 20692931 -30820653 + LTR25-int LTR ERV1 4971 5156 -430 4401 316 40 21 chrY 20693152 20694773 -30818811 + LTR25-int LTR ERV1 7214 8868 -51 1814 160 3 10 chrY 20694773 20695066 -30818518 - AluSg SINE Alu -19 291 1 4401 316 40 21 chrY 20695066 20695119 -30818465 + LTR25-int LTR ERV1 8868 8919 0 1481 230 88 92 chrY 20695172 20695248 -30818336 + LTR25 LTR ERV1 95 170 -399 222 37 0 0 chrY 20695248 20695275 -30818309 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1481 230 88 92 chrY 20695275 20695931 -30817653 + LTR25 LTR ERV1 170 565 -4 2734 278 32 30 chrY 20695936 20696979 -30816605 - LTR25-int LTR ERV1 -5145 1851 807 254 290 11 11 chrY 20697243 20697336 -30816248 - TAR1 Satellite telomeric -1706 405 313 348 24 0 0 chrY 20697342 20697383 -30816201 + (TG)n Simple_repeat Simple_repeat 2 42 0 642 263 76 24 chrY 20697404 20697999 -30815585 + L1MC/D LINE L1 4924 5544 -743 1423 161 27 0 chrY 20698075 20698336 -30815248 + MER34C LTR ERV1 1 268 -317 520 188 10 0 chrY 20698339 20698440 -30815144 - MLT2B3 LTR ERVL -452 102 1 1073 250 28 32 chrY 20698443 20698875 -30814709 + MER31-int LTR ERV1 1065 1494 -3442 314 258 65 0 chrY 20699176 20699269 -30814315 + MER31-int LTR ERV1 1924 2022 -2914 508 145 0 13 chrY 20899376 20899452 -30614132 - LTR12 LTR ERV1 -586 128 54 264 208 0 19 chrY 20899452 20899505 -30614079 - LTR30 LTR ERV1 -670 52 1 317 285 184 6 chrY 20900602 20900781 -30612803 - TAR1 Satellite telomeric -186 1925 1715 959 256 49 30 chrY 20901000 20901588 -30611996 + L1ME4a LINE L1 4909 5501 -748 23 0 0 0 chrY 20902446 20902469 -30611115 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrY 20902729 20902764 -30610820 + AT_rich Low_complexity Low_complexity 1 35 0 199 261 43 0 chrY 20903947 20903993 -30609591 - L2 LINE L2 -3 3269 3222 242 93 0 23 chrY 20904755 20904798 -30608786 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1878 155 7 0 chrY 20905165 20905475 -30608109 + AluSq SINE Alu 1 312 -1 657 224 0 0 chrY 20905608 20905724 -30607860 + FLAM_A SINE Alu 1 116 -17 191 35 0 35 chrY 20905735 20905764 -30607820 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 316 241 72 0 chrY 20906017 20906100 -30607484 - L1MC4 LINE L1 -1339 6703 6615 302 104 13 39 chrY 20906147 20906224 -30607360 + (TA)n Simple_repeat Simple_repeat 1 75 0 318 260 110 84 chrY 20908548 20908775 -30604809 + L1MC4 LINE L1 7793 8025 -17 331 307 119 11 chrY 20909122 20909298 -30604286 + L1ME4a LINE L1 5884 6078 -43 784 200 84 0 chrY 20909319 20909544 -30604040 + MER33 DNA MER1_type 27 270 -54 1515 127 0 0 chrY 20909748 20909969 -30603615 + AluY SINE Alu 1 221 -90 349 242 36 57 chrY 20909994 20910188 -30603396 + SST1 Satellite centromeric 412 601 -962 324 306 67 75 chrY 20910673 20911059 -30602525 + SST1 Satellite centromeric 1156 1538 -25 230 0 0 103 chrY 20911101 20911140 -30602444 + (TG)n Simple_repeat Simple_repeat 1 35 0 328 296 92 50 chrY 20912314 20912672 -30600912 + SST1 Satellite centromeric 229 601 -962 240 280 96 38 chrY 20913363 20913520 -30600064 + SST1 Satellite centromeric 1387 1552 -11 246 238 12 12 chrY 20913520 20913604 -30599980 + (TG)n Simple_repeat Simple_repeat 1 84 0 372 22 0 0 chrY 20913827 20913872 -30599712 + (CA)n Simple_repeat Simple_repeat 2 46 0 317 292 104 50 chrY 20914884 20915124 -30598460 + SST1 Satellite centromeric 349 601 -962 291 288 82 27 chrY 20915850 20915996 -30597588 + SST1 Satellite centromeric 1385 1538 -25 201 139 0 0 chrY 20916041 20916084 -30597500 + (TG)n Simple_repeat Simple_repeat 2 44 0 240 100 0 0 chrY 20918523 20918563 -30595021 + (TG)n Simple_repeat Simple_repeat 1 40 0 439 310 59 52 chrY 20919607 20920068 -30593516 + SST1 Satellite centromeric 138 601 -962 217 115 19 19 chrY 20920997 20921049 -30592535 + (TG)n Simple_repeat Simple_repeat 1 52 0 239 197 33 0 chrY 20923478 20923539 -30590045 + (TG)n Simple_repeat Simple_repeat 2 64 0 252 0 0 0 chrY 20923746 20923774 -30589810 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 285 328 36 28 chrY 20924834 20925081 -30588503 + SST1 Satellite centromeric 352 600 -963 276 312 84 13 chrY 20925795 20925949 -30587635 + SST1 Satellite centromeric 1374 1538 -25 339 25 0 0 chrY 20925986 20926026 -30587558 + (TG)n Simple_repeat Simple_repeat 1 40 0 186 43 0 0 chrY 20926254 20926277 -30587307 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 248 226 16 32 chrY 20926747 20926809 -30586775 - SST1 Satellite centromeric -341 1222 1162 4474 104 72 2 chrY 20927140 20927783 -30585801 + LTR12 LTR ERV1 1 688 0 290 297 52 62 chrY 20927965 20928157 -30585427 - SST1 Satellite centromeric -962 601 412 180 111 0 0 chrY 20929267 20929294 -30584290 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 204 203 38 13 chrY 20929499 20929578 -30584006 + (CA)n Simple_repeat Simple_repeat 2 82 0 222 37 0 0 chrY 20932148 20932175 -30581409 + (CA)n Simple_repeat Simple_repeat 2 28 0 233 317 92 28 chrY 20932222 20932364 -30581220 - SST1 Satellite centromeric -27 1536 1386 456 319 55 47 chrY 20933080 20933550 -30580034 - SST1 Satellite centromeric -952 611 138 189 0 0 0 chrY 20934088 20934109 -30579475 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 218 259 12 0 chrY 20934598 20934679 -30578905 + (CA)n Simple_repeat Simple_repeat 1 82 0 4187 108 3 10 chrY 20935771 20936362 -30577222 - LTR14C LTR ERVK 0 587 1 14968 113 7 1 chrY 20936362 20938477 -30575107 - HERVK14C LTR ERVK 0 7417 5289 4599 121 12 5 chrY 20938458 20939128 -30574456 - HERVK14C LTR ERVK -4863 2554 1880 * 11673 121 14 31 chrY 20939105 20940914 -30572670 - HERVK14C LTR ERVK -5640 1777 1 4194 106 8 8 chrY 20940914 20941249 -30572335 - LTR14C LTR ERVK 0 587 250 1969 114 40 0 chrY 20941249 20941547 -30572037 + AluYa5 SINE Alu 1 310 -1 4194 106 8 8 chrY 20941547 20941798 -30571786 - LTR14C LTR ERVK -336 251 1 271 329 48 33 chrY 20941912 20942122 -30571462 - SST1 Satellite centromeric -1271 292 80 1758 241 9 24 chrY 20942525 20942981 -30570603 - LTR2 LTR ERV1 0 449 1 9625 197 23 63 chrY 20942981 20945319 -30568265 - Harlequin LTR ERV1 -1 6895 4721 2721 137 2 14 chrY 20945317 20945732 -30567852 - HERVE LTR ERV1 -4897 2916 2507 * 10095 192 21 15 chrY 20945739 20948009 -30565575 - HERVE LTR ERV1 -5440 2373 9 1621 216 73 19 chrY 20948017 20948241 -30565343 - LTR2 LTR ERV1 0 449 239 204 40 0 0 chrY 20948241 20948266 -30565318 + (CAGAA)n Simple_repeat Simple_repeat 1 25 0 1621 216 73 19 chrY 20948266 20948467 -30565117 - LTR2 LTR ERV1 -210 239 1 222 218 18 0 chrY 20949062 20949117 -30564467 + (CA)n Simple_repeat Simple_repeat 1 56 0 459 266 67 59 chrY 20950031 20950418 -30563166 - SST1 Satellite centromeric -967 596 207 208 241 12 12 chrY 20951192 20951275 -30562309 + (CA)n Simple_repeat Simple_repeat 2 84 0 282 265 106 33 chrY 20951281 20951432 -30562152 - SST1 Satellite centromeric -28 1535 1374 308 294 63 68 chrY 20952340 20952738 -30560846 - SST1 Satellite centromeric -1105 458 63 386 319 54 56 chrY 20953818 20954210 -30559374 - SST1 Satellite centromeric -25 1538 1148 481 295 56 49 chrY 20954759 20955149 -30558435 - SST1 Satellite centromeric -1039 524 132 619 173 10 0 chrY 20956073 20956177 -30557407 - LTR1 LTR ERV1 -104 681 577 355 217 0 22 chrY 20956176 20956268 -30557316 - LTR1 LTR ERV1 -695 90 1 * 264 262 119 0 chrY 20956441 20956525 -30557059 - LTR33A LTR ERVL -338 185 92 362 232 14 0 chrY 20957472 20957541 -30556043 - AluJo SINE Alu -20 282 213 695 228 89 13 chrY 20957541 20957585 -30555999 - AluJo SINE Alu -132 180 141 186 43 0 0 chrY 20957585 20957608 -30555976 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 695 228 89 13 chrY 20957608 20957721 -30555863 - AluJo SINE Alu -171 141 11 387 0 0 0 chrY 20958000 20958043 -30555541 + (TA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chrY 20959700 20959721 -30553863 + AT_rich Low_complexity Low_complexity 1 21 0 444 183 0 0 chrY 20959959 20960052 -30553532 + CT-rich Low_complexity Low_complexity 1 93 0 2377 89 9 3 chrY 20961141 20961457 -30552127 - L1PA6 LINE L1 0 6154 5837 793 79 0 0 chrY 20961457 20961558 -30552026 + L1P3 LINE L1 5432 5532 -622 297 273 79 36 chrY 20966811 20966950 -30546634 + MLT1F LTR MaLR 370 514 -28 898 243 5 0 chrY 20967418 20967632 -30545952 + AluSg/x SINE Alu 95 309 -1 1337 243 28 3 chrY 20967668 20967800 -30545784 + AluSx SINE Alu 1 128 -174 366 23 0 0 chrY 20967800 20967843 -30545741 + (CA)n Simple_repeat Simple_repeat 2 44 0 1337 243 28 3 chrY 20967843 20967998 -30545586 + AluSx SINE Alu 128 295 -7 231 188 0 0 chrY 20968027 20968075 -30545509 + GA-rich Low_complexity Low_complexity 3 50 0 281 154 17 0 chrY 20968087 20968148 -30545436 - L1MA4 LINE L1 -15 6287 6223 525 273 35 0 chrY 20968150 20968322 -30545262 + L1MA4 LINE L1 5999 6176 -124 1385 226 7 45 chrY 20968369 20968679 -30544905 + AluJo SINE Alu 2 299 -3 1578 198 3 14 chrY 20968745 20969033 -30544551 - AluSx SINE Alu -15 287 3 1400 212 32 11 chrY 20969495 20969778 -30543806 + AluSg SINE Alu 1 289 -11 593 213 83 53 chrY 20971693 20972021 -30541563 + L1M4 LINE L1 5254 5601 -577 324 219 61 26 chrY 20972206 20972320 -30541264 + L1MC/D LINE L1 5306 5423 -755 289 143 0 0 chrY 20972321 20972370 -30541214 - L1PA6 LINE L1 0 6154 6106 533 212 23 45 chrY 20972384 20972582 -30541002 + L1MC/D LINE L1 5414 5616 -587 740 191 119 90 chrY 20972728 20972868 -30540716 + L1M4 LINE L1 5257 5391 -787 343 83 0 0 chrY 20972868 20972916 -30540668 - L1PA6 LINE L1 -1 6153 6106 740 191 119 90 chrY 20972916 20973110 -30540474 + L1M4 LINE L1 5391 5601 -577 597 204 80 112 chrY 20973270 20973417 -30540167 + L1M4 LINE L1 5254 5404 -774 304 106 0 0 chrY 20973417 20973464 -30540120 - L1PA6 LINE L1 -2 6152 6106 597 204 80 112 chrY 20973464 20973662 -30539922 + L1M4 LINE L1 5404 5601 -577 1026 206 88 74 chrY 20973822 20973966 -30539618 + L1MB5 LINE L1 5254 5394 -786 305 143 0 0 chrY 20973966 20974015 -30539569 - L1PA6 LINE L1 0 6154 6106 1026 206 88 74 chrY 20974015 20974301 -30539283 + L1MB5 LINE L1 5394 5690 -490 1239 257 48 6 chrY 20974357 20974688 -30538896 + L1MB5 LINE L1 5817 6161 -13 901 266 25 29 chrY 20976151 20976392 -30537192 + AluJo SINE Alu 2 241 -71 21 36 0 0 chrY 20977291 20977319 -30536265 + AT_rich Low_complexity Low_complexity 1 28 0 1637 176 0 10 chrY 20977868 20978169 -30535415 - AluSg SINE Alu -12 298 1 1882 133 7 3 chrY 20980186 20980488 -30533096 + AluSc SINE Alu 1 303 -6 1807 148 3 22 chrY 20980966 20981277 -30532307 - AluSc SINE Alu -3 306 2 21 82 0 0 chrY 20982563 20982612 -30530972 + AT_rich Low_complexity Low_complexity 1 49 0 432 0 0 0 chrY 20982641 20982689 -30530895 + (CA)n Simple_repeat Simple_repeat 2 49 0 281 161 226 66 chrY 20983130 20983165 -30530419 - L1MA7 LINE L1 -30 6261 6233 1046 224 76 22 chrY 20983165 20983442 -30530142 - AluJb SINE Alu -9 293 2 281 161 226 66 chrY 20983442 20983543 -30530041 - L1MA7 LINE L1 -58 6233 6103 401 132 0 44 chrY 20983633 20983701 -30529883 + MER1B DNA MER1_type 211 275 -64 263 174 0 0 chrY 20983867 20983913 -30529671 + MER1B DNA MER1_type 272 317 -16 548 222 0 0 chrY 20983932 20984031 -30529553 - AluJ/FLAM SINE Alu -211 101 3 1582 173 14 3 chrY 20989049 20989332 -30524252 - AluSx SINE Alu -26 286 1 1794 163 0 0 chrY 20989629 20989912 -30523672 + AluSq SINE Alu 1 283 -30 303 279 71 36 chrY 20990382 20990522 -30523062 + MLT1F LTR MaLR 370 514 -28 911 214 0 0 chrY 20991021 20991208 -30522376 + AluSg/x SINE Alu 125 311 -1 1343 223 3 7 chrY 20991248 20991540 -30522044 + AluSx SINE Alu 5 295 -17 231 188 0 0 chrY 20991569 20991617 -30521967 + GA-rich Low_complexity Low_complexity 3 50 0 277 174 27 0 chrY 20991625 20991704 -30521880 - L1MA4 LINE L1 -11 6292 6209 * 525 273 35 0 chrY 20991692 20991864 -30521720 + L1MA4 LINE L1 5999 6176 -124 1385 226 7 45 chrY 20991911 20992221 -30521363 + AluJo SINE Alu 2 299 -3 1578 198 3 14 chrY 20992287 20992575 -30521009 - AluSx SINE Alu -15 287 3 1377 216 32 11 chrY 20993037 20993320 -30520264 + AluSg SINE Alu 1 289 -11 593 213 83 53 chrY 20995234 20995562 -30518022 + L1M4 LINE L1 5254 5601 -577 324 219 61 26 chrY 20995747 20995861 -30517723 + L1MC/D LINE L1 5306 5423 -755 289 143 0 0 chrY 20995862 20995911 -30517673 - L1PA6 LINE L1 0 6154 6106 533 212 23 45 chrY 20995925 20996123 -30517461 + L1MC/D LINE L1 5414 5616 -587 717 194 119 90 chrY 20996269 20996409 -30517175 + L1M3 LINE L1 5257 5391 -787 343 83 0 0 chrY 20996409 20996457 -30517127 - L1PA6 LINE L1 -1 6153 6106 717 194 119 90 chrY 20996457 20996651 -30516933 + L1M3 LINE L1 5391 5601 -577 597 204 80 112 chrY 20996811 20996958 -30516626 + L1M4 LINE L1 5254 5404 -774 304 106 0 0 chrY 20996958 20997005 -30516579 - L1PA6 LINE L1 -2 6152 6106 597 204 80 112 chrY 20997005 20997203 -30516381 + L1M4 LINE L1 5404 5601 -577 1026 206 88 74 chrY 20997363 20997507 -30516077 + L1MB5 LINE L1 5254 5394 -786 305 143 0 0 chrY 20997507 20997556 -30516028 - L1PA6 LINE L1 0 6154 6106 1026 206 88 74 chrY 20997556 20997842 -30515742 + L1MB5 LINE L1 5394 5690 -490 1239 257 48 6 chrY 20997898 20998229 -30515355 + L1MB5 LINE L1 5817 6161 -13 901 266 25 29 chrY 20999692 20999933 -30513651 + AluJo SINE Alu 2 241 -71 21 36 0 0 chrY 21000832 21000860 -30512724 + AT_rich Low_complexity Low_complexity 1 28 0 1637 176 0 10 chrY 21001409 21001710 -30511874 - AluSg SINE Alu -12 298 1 1882 133 7 3 chrY 21003727 21004029 -30509555 + AluSc SINE Alu 1 303 -6 1837 145 3 22 chrY 21004507 21004818 -30508766 - AluSc SINE Alu -3 306 2 21 82 0 0 chrY 21006104 21006153 -30507431 + AT_rich Low_complexity Low_complexity 1 49 0 432 0 0 0 chrY 21006182 21006230 -30507354 + (CA)n Simple_repeat Simple_repeat 2 49 0 281 161 226 66 chrY 21006671 21006706 -30506878 - L1MA7 LINE L1 -30 6261 6233 1046 224 76 22 chrY 21006706 21006983 -30506601 - AluJb SINE Alu -9 293 2 281 161 226 66 chrY 21006983 21007084 -30506500 - L1MA7 LINE L1 -58 6233 6103 401 132 0 44 chrY 21007174 21007242 -30506342 + MER1B DNA MER1_type 211 275 -64 263 174 0 0 chrY 21007408 21007454 -30506130 + MER1B DNA MER1_type 272 317 -16 548 222 0 0 chrY 21007473 21007572 -30506012 - AluJ/FLAM SINE Alu -211 101 3 1582 173 14 3 chrY 21012590 21012873 -30500711 - AluSx SINE Alu -26 286 1 1794 163 0 0 chrY 21013170 21013453 -30500131 + AluSq SINE Alu 1 283 -30 301 279 71 36 chrY 21013923 21014063 -30499521 + MLT1F LTR MaLR 370 514 -28 898 243 5 0 chrY 21014531 21014745 -30498839 + AluSg/x SINE Alu 95 309 -1 1209 232 28 3 chrY 21014785 21014913 -30498671 + AluSx SINE Alu 5 128 -184 312 27 0 0 chrY 21014913 21014950 -30498634 + (CA)n Simple_repeat Simple_repeat 2 38 0 1209 232 28 3 chrY 21014950 21015105 -30498479 + AluSx SINE Alu 128 295 -17 231 188 0 0 chrY 21015134 21015182 -30498402 + GA-rich Low_complexity Low_complexity 3 50 0 281 154 17 0 chrY 21015194 21015255 -30498329 - L1MA4 LINE L1 -15 6287 6223 525 273 35 0 chrY 21015257 21015429 -30498155 + L1MA4 LINE L1 5999 6176 -124 1210 235 13 41 chrY 21015476 21015791 -30497793 + AluJo SINE Alu 2 307 -5 1450 206 11 14 chrY 21015849 21016135 -30497449 - AluSx SINE Alu -25 287 3 1216 227 33 4 chrY 21016618 21016914 -30496670 + AluSg SINE Alu 1 304 0 1253 205 111 18 chrY 21018864 21019259 -30494325 + L1MB5 LINE L1 5254 5685 -495 1055 285 32 6 chrY 21019331 21019647 -30493937 + L1MB5 LINE L1 5838 6161 -13 1054 262 38 31 chrY 21021124 21021414 -30492170 + AluJo SINE Alu 1 292 -10 30 0 0 0 chrY 21022512 21022542 -30491042 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chrY 21022811 21022835 -30490749 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1439 190 7 7 chrY 21022835 21023109 -30490475 - AluSg SINE Alu -32 278 5 24 0 0 0 chrY 21023119 21023143 -30490441 + AT_rich Low_complexity Low_complexity 1 24 0 2038 133 3 0 chrY 21025151 21025459 -30488125 + AluSc SINE Alu 1 309 0 201 245 10 41 chrY 21027220 21027318 -30486266 + (CATA)n Simple_repeat Simple_repeat 2 96 0 283 187 16 98 chrY 21027769 21027805 -30485779 - L1MA7 LINE L1 -29 6262 6225 794 214 114 68 chrY 21027805 21028085 -30485499 - AluJb SINE Alu -8 294 2 283 187 16 98 chrY 21028085 21028171 -30485413 - L1MA7 LINE L1 -66 6225 6150 299 108 0 135 chrY 21028276 21028350 -30485234 + MER1B DNA MER1_type 211 274 -65 287 122 20 0 chrY 21028514 21028563 -30485021 + MER1B DNA MER1_type 267 316 -13 525 252 0 9 chrY 21028566 21028673 -30484911 - FLAM_C SINE Alu -25 118 13 317 289 114 109 chrY 21030140 21030780 -30482804 - L1M2 LINE L1 -5735 1114 472 1678 184 0 13 chrY 21032964 21032988 -30480596 - AluSx SINE Alu -7 305 282 258 32 0 0 chrY 21032988 21033019 -30480565 + (TG)n Simple_repeat Simple_repeat 2 32 0 1678 184 0 13 chrY 21033019 21033303 -30480281 - AluSx SINE Alu -30 282 1 1911 162 7 0 chrY 21035068 21035364 -30478220 - AluSx SINE Alu -14 298 1 183 42 0 0 chrY 21035364 21035388 -30478196 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 976 249 15 15 chrY 21035388 21035657 -30477927 - AluJo SINE Alu -31 281 13 519 257 129 7 chrY 21039505 21039645 -30473939 + FAM SINE Alu 2 158 -17 417 110 0 0 chrY 21039645 21039718 -30473866 + (TC)n Simple_repeat Simple_repeat 1 73 0 347 118 9 55 chrY 21040212 21040322 -30473262 + (TA)n Simple_repeat Simple_repeat 2 106 0 1359 170 86 116 chrY 21041910 21042374 -30471210 - LTR7 LTR ERV1 0 450 1 2533 66 0 0 chrY 21043740 21044043 -30469541 - AluY SINE Alu -8 303 1 896 266 4 35 chrY 21047379 21047638 -30465946 - AluJo SINE Alu -54 258 8 437 135 7 30 chrY 21048351 21048442 -30465142 - L1P5 LINE L1 -483 5668 5587 383 105 0 0 chrY 21048447 21048504 -30465080 + L1MA1 LINE L1 5725 5781 -523 1343 27 0 0 chrY 21048504 21048650 -30464934 + L1PA2 LINE L1 6006 6155 0 3581 111 11 11 chrY 21048650 21049183 -30464401 + L1MA1 LINE L1 5769 6302 0 23 0 0 0 chrY 21049264 21049287 -30464297 + AT_rich Low_complexity Low_complexity 1 23 0 195 203 0 0 chrY 21049306 21049365 -30464219 + (CA)n Simple_repeat Simple_repeat 2 60 0 197 163 20 0 chrY 21050452 21050501 -30463083 + (TA)n Simple_repeat Simple_repeat 1 50 0 355 408 25 0 chrY 21050514 21050671 -30462913 - L2 LINE L2 -21 3251 3091 236 264 97 0 chrY 21051096 21051168 -30462416 - MIR SINE MIR -98 164 86 24 53 0 0 chrY 21051747 21051785 -30461799 + AT_rich Low_complexity Low_complexity 1 38 0 262 331 35 55 chrY 21052990 21053135 -30460449 - MIR SINE MIR -56 206 65 269 154 39 13 chrY 21053502 21053580 -30460004 + CT-rich Low_complexity Low_complexity 1 80 0 245 287 37 93 chrY 21054442 21054550 -30459034 + MER5B DNA MER1_type 5 106 -72 410 322 60 20 chrY 21054705 21054854 -30458730 + MIR3 SINE MIR 11 165 -43 521 295 51 27 chrY 21055933 21056269 -30457315 + L1MC5 LINE L1 6876 7219 -742 434 280 44 11 chrY 21056407 21056589 -30456995 + L1MC5 LINE L1 7256 7443 -518 310 252 91 75 chrY 21056715 21056969 -30456615 + L1MC5 LINE L1 7667 7924 -37 302 364 93 0 chrY 21057167 21057305 -30456279 + LTR33 LTR ERVL 1 151 -370 857 310 118 6 chrY 21057305 21057637 -30455947 + LTR33 LTR ERVL 4 372 -149 256 191 0 0 chrY 21057633 21057675 -30455909 + LTR33 LTR ERVL 478 519 -2 * 193 322 34 51 chrY 21057676 21057794 -30455790 + L2 LINE L2 3193 3308 -5 5619 94 1 5 chrY 21057927 21058682 -30454902 - HERVK9 LTR ERVK -3897 2019 1268 3905 109 28 3 chrY 21058682 21059260 -30454324 - HERVK9 LTR ERVK -5324 592 1 3404 110 28 4 chrY 21059260 21059317 -30454267 - MER9 LTR ERVK 0 511 457 414 0 0 0 chrY 21059317 21059363 -30454221 + (CA)n Simple_repeat Simple_repeat 1 46 0 3404 110 28 4 chrY 21059363 21059804 -30453780 - MER9 LTR ERVK -54 457 1 186 43 0 0 chrY 21060261 21060284 -30453300 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 373 364 88 33 chrY 21061209 21061514 -30452070 + L2 LINE L2 2946 3267 -5 1438 215 11 3 chrY 21061717 21062001 -30451583 + AluJb SINE Alu 3 288 -24 1396 212 10 14 chrY 21062195 21062492 -30451092 - AluSx SINE Alu -16 296 1 243 134 0 45 chrY 21062773 21062840 -30450744 + (TA)n Simple_repeat Simple_repeat 1 64 0 241 342 114 11 chrY 21063157 21063341 -30450243 - L3 LINE CR1 -1180 397 195 21 36 0 0 chrY 21064088 21064116 -30449468 + AT_rich Low_complexity Low_complexity 1 28 0 498 247 145 38 chrY 21065387 21065622 -30447962 + MIR SINE MIR 2 261 -1 186 304 157 10 chrY 21066093 21066195 -30447389 + MIR SINE MIR 64 180 -82 543 232 27 94 chrY 21066278 21066502 -30447082 - MER46C DNA MER2_type -129 209 1 194 304 36 0 chrY 21066515 21066571 -30447013 + MIR SINE MIR 204 261 -1 1648 194 0 25 chrY 21068262 21068582 -30445002 - AluSx SINE Alu 0 312 1 1248 191 40 80 chrY 21068805 21069181 -30444403 + LTR61 LTR ERV1 235 595 0 1763 240 0 13 chrY 21069185 21069560 -30444024 + HERV3 LTR ERV1 5 374 -8052 4973 265 40 14 chrY 21069627 21070891 -30442693 + HERV3 LTR ERV1 363 1658 -6768 * 6748 270 17 16 chrY 21070889 21073569 -30440015 + HERV3 LTR ERV1 1986 4760 -3666 522 258 0 8 chrY 21073653 21073781 -30439803 + HERV3 LTR ERV1 8283 8409 -17 1897 198 71 41 chrY 21073801 21074310 -30439274 + LTR61 LTR ERV1 72 595 0 902 179 60 0 chrY 21074328 21074496 -30439088 - AluSg SINE Alu -15 295 118 17826 53 4 0 chrY 21074505 21077566 -30436018 - L1PA4 LINE L1 0 6155 3085 915 130 7 0 chrY 21077566 21077704 -30435880 - L1P LINE L1 -6007 139 1 * 2876 168 25 25 chrY 21077700 21078295 -30435289 - L1PA10 LINE L1 -184 5984 5390 848 107 16 0 chrY 21078965 21079086 -30434498 - LTR15 LTR ERV1 -16 477 355 2169 126 27 4 chrY 21079088 21079599 -30433985 - HERV15 LTR ERV1 -1093 7642 6972 200 33 0 33 chrY 21079599 21079629 -30433955 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2169 126 27 4 chrY 21079629 21079837 -30433747 - HERV15 LTR ERV1 -1763 6972 6770 465 120 13 0 chrY 21079839 21079914 -30433670 - LTR15 LTR ERV1 -417 76 1 382 309 138 20 chrY 21079926 21080172 -30433412 - L1M4 LINE L1 -5292 1250 976 21 36 0 0 chrY 21080212 21080240 -30433344 + AT_rich Low_complexity Low_complexity 1 28 0 327 315 54 8 chrY 21081214 21081344 -30432240 - L2 LINE L2 -355 2958 2823 198 0 0 0 chrY 21082003 21082025 -30431559 + (TG)n Simple_repeat Simple_repeat 1 22 0 3178 34 0 0 chrY 21082032 21082412 -30431172 - L1PA2 LINE L1 0 6155 5776 3625 15 0 0 chrY 21082412 21082823 -30430761 + L1PA2 LINE L1 5368 5778 -377 5430 66 5 6 chrY 21083505 21084381 -30429203 - L1PA4 LINE L1 -176 5979 5101 * 14980 94 3 34 chrY 21084370 21086566 -30427018 - L1PA4 LINE L1 -4009 2137 9 888 166 0 0 chrY 21086566 21086705 -30426879 - AluSg SINE Alu -171 139 1 196 234 39 104 chrY 21086928 21087005 -30426579 + MIR SINE MIR 153 224 -38 1888 122 4 0 chrY 21087560 21087822 -30425762 + AluY SINE Alu 47 309 -2 10080 34 0 0 chrY 21087822 21089114 -30424470 + L1P1 LINE L1 4163 5454 -701 8635 60 2 3 chrY 21089114 21091003 -30422581 + L1PA5 LINE L1 4261 6152 -2 259 289 60 0 chrY 21091498 21091581 -30422003 - L2 LINE L2 -20 3293 3206 249 109 0 0 chrY 21093130 21093176 -30420408 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 209 247 11 34 chrY 21093901 21093990 -30419594 + GA-rich Low_complexity Low_complexity 4 90 0 855 243 64 94 chrY 21096141 21096515 -30417069 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chrY 21097972 21097995 -30415589 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrY 21099997 21100018 -30413566 + AT_rich Low_complexity Low_complexity 1 21 0 320 162 13 193 chrY 21100816 21101044 -30412540 - MER53 DNA DNA -1 188 2 2372 74 0 7 chrY 21101119 21101417 -30412167 + AluY SINE Alu 1 296 -15 228 301 0 32 chrY 21102267 21102360 -30411224 - MIR SINE MIR -49 213 124 600 322 17 13 chrY 21102726 21102956 -30410628 + L1MDa LINE L1 119 349 -6191 699 216 0 0 chrY 21102994 21103119 -30410465 + LTR4 LTR ERV1 472 596 0 31867 175 15 9 chrY 21103120 21108491 -30405093 + HERV3 LTR ERV1 1 5402 -3024 16337 158 29 14 chrY 21108493 21111265 -30402319 + HERV3 LTR ERV1 5616 8426 0 2673 205 68 7 chrY 21111265 21111825 -30401759 + LTR4 LTR ERV1 1 594 -2 182 309 100 36 chrY 21112132 21112242 -30401342 - L2 LINE L2 -27 3286 3170 1410 184 8 0 chrY 21112461 21112700 -30400884 + AluSg SINE Alu 34 274 -36 306 0 0 0 chrY 21112700 21112734 -30400850 + (TAA)n Simple_repeat Simple_repeat 2 35 0 25 31 0 0 chrY 21114260 21114292 -30399292 + AT_rich Low_complexity Low_complexity 1 32 0 1080 211 59 88 chrY 21115071 21115445 -30398139 + MLT1A1 LTR MaLR 3 365 0 1852 133 3 3 chrY 21116500 21116785 -30396799 - AluY SINE Alu 0 311 27 24 32 0 0 chrY 21119098 21119129 -30394455 + AT_rich Low_complexity Low_complexity 1 31 0 245 167 103 0 chrY 21119607 21119685 -30393899 + (CAAAT)n Simple_repeat Simple_repeat 3 88 0 287 197 42 0 chrY 21120053 21120124 -30393460 - MER53 DNA DNA -1 188 115 251 164 19 182 chrY 21120066 21120225 -30393359 + MER53 DNA DNA 25 157 -32 * 2037 184 110 7 chrY 21121445 21121850 -30391734 + MER9 LTR ERVK 1 461 -50 315 0 0 0 chrY 21121850 21121885 -30391699 + (TG)n Simple_repeat Simple_repeat 2 36 0 2037 184 110 7 chrY 21121885 21121942 -30391642 + MER9 LTR ERVK 461 511 0 7992 141 49 48 chrY 21121942 21122708 -30390876 + HERVK9 LTR ERVK 1 829 -5087 201 200 0 83 chrY 21122708 21122768 -30390816 + MER5B DNA MER1_type 55 109 -69 7992 141 49 48 chrY 21122768 21123438 -30390146 + HERVK9 LTR ERVK 829 1497 -4419 * 12385 139 37 44 chrY 21123429 21125589 -30387995 + HERVK9 LTR ERVK 3773 5916 0 2480 163 71 4 chrY 21125589 21126068 -30387516 + MER9 LTR ERVK 1 511 0 992 223 17 52 chrY 21126269 21126614 -30386970 + L1MDa LINE L1 65 397 -6143 1688 173 17 7 chrY 21126717 21127012 -30386572 - AluSp SINE Alu -15 298 1 1228 278 65 43 chrY 21127351 21128156 -30385428 + L1M4 LINE L1 4383 5204 -942 636 192 149 48 chrY 21128160 21128368 -30385216 + MER52C LTR ERV1 890 1118 -160 1660 189 22 6 chrY 21128404 21128721 -30384863 - LTR22 LTR ERVK -4 576 255 552 168 35 0 chrY 21128738 21128851 -30384733 - LTR22 LTR ERVK -463 117 1 * 871 219 18 0 chrY 21128851 21129013 -30384571 + MER52C LTR ERV1 1114 1278 0 419 340 82 39 chrY 21129036 21129315 -30384269 - L1MDa LINE L1 -5469 1071 781 * 1156 299 74 21 chrY 21129295 21129807 -30383777 - L1MDa LINE L1 -5967 573 35 1468 204 36 0 chrY 21130375 21130654 -30382930 - AluSx SINE Alu -23 289 1 38932 89 2 3 chrY 21131232 21137373 -30376211 + L1PA5 LINE L1 11 6145 -9 259 194 42 0 chrY 21137373 21137593 -30375991 + (TA)n Simple_repeat Simple_repeat 1 229 0 183 200 18 27 chrY 21137623 21137733 -30375851 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 279 0 0 0 chrY 21137981 21138012 -30375572 + (TG)n Simple_repeat Simple_repeat 2 32 0 1417 220 21 0 chrY 21138456 21138742 -30374842 + AluSx SINE Alu 5 296 -16 23 78 0 0 chrY 21139336 21139387 -30374197 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chrY 21140181 21140210 -30373374 + AT_rich Low_complexity Low_complexity 1 29 0 657 273 36 0 chrY 21140307 21140501 -30373083 + MER2 DNA MER2_type 7 207 -138 219 288 62 0 chrY 21140774 21140854 -30372730 - MIR SINE MIR -1 261 177 1155 193 9 0 chrY 21140859 21141071 -30372513 - AluSq SINE Alu -19 294 81 21 36 0 0 chrY 21141944 21141972 -30371612 + AT_rich Low_complexity Low_complexity 1 28 0 379 270 40 10 chrY 21141975 21142075 -30371509 - AluJ SINE Alu -2 300 198 2018 259 8 4 chrY 21142088 21142570 -30371014 + MER1A DNA MER1_type 28 511 -18 210 160 0 0 chrY 21143072 21143122 -30370462 + (TG)n Simple_repeat Simple_repeat 1 50 0 775 277 20 5 chrY 21143171 21143373 -30370211 - AluJ SINE Alu -107 205 1 25 51 0 0 chrY 21143497 21143536 -30370048 + AT_rich Low_complexity Low_complexity 1 39 0 383 266 11 21 chrY 21143773 21143867 -30369717 - AluJo SINE Alu -121 181 89 21 36 0 0 chrY 21145965 21145993 -30367591 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chrY 21148702 21148759 -30364825 + AT_rich Low_complexity Low_complexity 1 57 0 925 274 90 4 chrY 21148859 21149136 -30364448 + AluSx SINE Alu 1 301 -11 36 40 0 0 chrY 21149271 21149321 -30364263 + AT_rich Low_complexity Low_complexity 1 50 0 994 194 0 0 chrY 21149461 21149626 -30363958 - AluSq SINE Alu -20 293 129 300 154 0 0 chrY 21149635 21149687 -30363897 + (TG)n Simple_repeat Simple_repeat 1 52 0 779 172 0 0 chrY 21149687 21149815 -30363769 - AluSq SINE Alu -184 129 2 244 256 47 47 chrY 21149937 21150066 -30363518 + MER20 DNA MER1_type 91 219 0 516 202 266 0 chrY 21150124 21150248 -30363336 + AluSq SINE Alu 137 293 -20 2428 272 19 7 chrY 21150443 21151027 -30362557 - MER52A LTR ERV1 -4 1751 1161 505 127 0 0 chrY 21151028 21151107 -30362477 + HERVL LTR ERVL 710 788 -4866 1944 100 9 59 chrY 21151502 21151823 -30361761 - AluY SINE Alu -6 305 1 278 246 0 0 chrY 21152075 21152132 -30361452 - MER20 DNA MER1_type -73 146 90 290 276 42 120 chrY 21152163 21152380 -30361204 + L2 LINE L2 2763 2962 -352 522 40 27 0 chrY 21152465 21152539 -30361045 - L1PA6 LINE L1 -1 6153 6078 21 89 0 0 chrY 21153528 21153584 -30360000 + AT_rich Low_complexity Low_complexity 1 56 0 303 259 111 26 chrY 21153697 21153886 -30359698 + L1M4 LINE L1 2295 2499 -3885 1434 237 92 55 chrY 21153985 21154040 -30359544 + L1M4c LINE L1 1041 1092 -5292 1708 171 11 0 chrY 21154040 21154304 -30359280 + AluSc SINE Alu 21 287 -22 1434 237 92 55 chrY 21154304 21154996 -30358588 + L1M4c LINE L1 1092 1816 -4568 748 336 27 5 chrY 21156031 21156394 -30357190 - MER52A LTR ERV1 -506 1249 923 1491 215 10 0 chrY 21156499 21156797 -30356787 + AluSp SINE Alu 2 302 -11 192 77 0 0 chrY 21156804 21156830 -30356754 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 250 223 10 32 chrY 21156915 21157228 -30356356 + (CCCTAA)n Simple_repeat Simple_repeat 1 305 0 258 236 0 33 chrY 21157241 21157425 -30356159 + (CCCTAA)n Simple_repeat Simple_repeat 1 177 0 289 182 15 23 chrY 21157495 21157627 -30355957 + (CCCTAA)n Simple_repeat Simple_repeat 4 134 0 345 168 0 48 chrY 21157662 21157829 -30355755 + (CCCTAA)n Simple_repeat Simple_repeat 6 164 0 333 210 18 18 chrY 21157892 21158059 -30355525 + (CCCTAA)n Simple_repeat Simple_repeat 6 172 0 817 316 58 20 chrY 21158310 21158947 -30354637 + L1M4 LINE L1 3975 4635 -1747 6415 29 0 0 chrY 21159595 21160328 -30353256 + L1PA3 LINE L1 5423 6155 0 1009 229 97 8 chrY 21160605 21160872 -30352712 + AluJo SINE Alu 19 309 -3 311 253 37 2 chrY 21161135 21161243 -30352341 + MER31-int LTR ERV1 3521 3620 -1316 2322 158 26 91 chrY 21161276 21161863 -30351721 + MER4B LTR ERV1 28 754 -25 340 296 24 29 chrY 21162913 21163119 -30350465 + L1M4 LINE L1 4305 4509 -1637 945 227 107 12 chrY 21163121 21163363 -30350221 + AluJo SINE Alu 1 265 -47 443 296 130 22 chrY 21163526 21163942 -30349642 + L1M4 LINE L1 4728 5188 -958 1359 216 0 18 chrY 21163947 21164230 -30349354 + AluSx SINE Alu 5 282 -30 1095 74 0 0 chrY 21164230 21164365 -30349219 + AluY SINE Alu 166 300 -11 379 212 99 13 chrY 21164367 21164540 -30349044 + L1M4 LINE L1 5197 5381 -765 5556 117 25 7 chrY 21165060 21166371 -30347213 - L1PA8 LINE L1 -6 6166 4826 1495 216 9 20 chrY 21166386 21166733 -30346851 - L1P LINE L1 -3793 2353 2011 192 40 0 0 chrY 21166733 21166758 -30346826 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 640 209 0 39 chrY 21166759 21166912 -30346672 - AluJo/FRAM SINE Alu -19 283 137 402 107 0 0 chrY 21166912 21166968 -30346616 - AluY SINE Alu -166 135 80 * 1862 145 33 33 chrY 21166965 21167297 -30346287 + LTR22B LTR ERVK 127 458 -34 349 269 46 15 chrY 21167495 21167625 -30345959 + L1MC3 LINE L1 5885 6018 -1767 1755 174 3 10 chrY 21167752 21168056 -30345528 + AluY SINE Alu 1 302 -9 590 167 9 9 chrY 21168158 21168272 -30345312 - L1MB3 LINE L1 -2 6181 6068 760 176 60 55 chrY 21168272 21168454 -30345130 - L1MB3 LINE L1 -621 5553 5371 2636 236 49 10 chrY 21168466 21169389 -30344195 + L1MB5 LINE L1 5083 6038 -136 2009 237 65 67 chrY 21169558 21170293 -30343291 - MER50 LTR ERV1 0 734 1 806 252 56 68 chrY 21171078 21171487 -30342097 + L1ME1 LINE L1 5584 5987 -179 236 305 12 12 chrY 21172747 21172829 -30340755 + HAL1 LINE L1 1828 1909 -598 392 50 0 75 chrY 21172879 21172959 -30340625 + (TTTAA)n Simple_repeat Simple_repeat 3 76 0 23 33 0 0 chrY 21173376 21173406 -30340178 + AT_rich Low_complexity Low_complexity 1 30 0 198 288 181 54 chrY 21174280 21174485 -30339099 - MIR SINE MIR -1 261 31 4452 99 2 0 chrY 21175367 21175953 -30337631 + LTR14C LTR ERVK 1 587 0 399 121 0 0 chrY 21176200 21176266 -30337318 + Alu SINE Alu 237 302 0 32678 134 8 19 chrY 21176304 21182188 -30331396 + L1PA6 LINE L1 11 5828 -326 21 57 0 0 chrY 21182196 21182231 -30331353 + AT_rich Low_complexity Low_complexity 1 35 0 774 246 148 8 chrY 21182417 21182653 -30330931 - AluJo SINE Alu -28 284 16 1400 278 71 33 chrY 21182656 21183391 -30330193 - L1M4c LINE L1 -4490 1894 1132 422 311 61 54 chrY 21183868 21184328 -30329256 - SST1 Satellite centromeric -963 600 138 198 0 0 0 chrY 21185353 21185375 -30328209 + (CA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chrY 21186582 21186603 -30326981 + (CA)n Simple_repeat Simple_repeat 2 22 0 393 313 71 44 chrY 21187504 21188025 -30325559 - SST1 Satellite centromeric -963 600 66 205 250 0 0 chrY 21189005 21189065 -30324519 + (CA)n Simple_repeat Simple_repeat 1 60 0 596 292 68 50 chrY 21190069 21190572 -30323012 - SST1 Satellite centromeric -965 598 87 246 81 0 0 chrY 21191563 21191600 -30321984 + (CA)n Simple_repeat Simple_repeat 2 38 0 244 146 0 0 chrY 21191812 21191853 -30321731 - TAR1 Satellite telomeric -83 2028 1988 1959 157 0 0 chrY 21193028 21193322 -30320262 + AluY SINE Alu 1 294 -17 252 158 0 0 chrY 21195012 21195069 -30318515 + (CA)n Simple_repeat Simple_repeat 2 58 0 270 303 88 72 chrY 21195983 21196303 -30317281 - SST1 Satellite centromeric -76 1487 1163 404 317 64 52 chrY 21196787 21197320 -30316264 - SST1 Satellite centromeric -962 601 63 231 61 0 0 chrY 21198292 21198325 -30315259 + (CA)n Simple_repeat Simple_repeat 2 34 0 323 291 68 51 chrY 21199202 21199494 -30314090 - SST1 Satellite centromeric -1039 524 228 182 105 26 0 chrY 21200436 21200474 -30313110 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7363 57 7 3 chrY 21200637 21201531 -30312053 - MER11D LTR ERVK 0 897 1 268 300 61 71 chrY 21201663 21202056 -30311528 - SST1 Satellite centromeric -27 1536 1148 279 71 0 0 chrY 21204047 21204089 -30309495 + (CA)n Simple_repeat Simple_repeat 1 42 0 281 326 0 0 chrY 21204423 21204515 -30309069 - SST1 Satellite centromeric -324 1239 1148 337 323 64 51 chrY 21204962 21205494 -30308090 - SST1 Satellite centromeric -962 601 63 210 176 0 0 chrY 21206471 21206522 -30307062 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 284 70 65 chrY 21207440 21207669 -30305915 - SST1 Satellite centromeric -962 601 372 389 324 47 54 chrY 21209843 21210359 -30303225 - SST1 Satellite centromeric -967 596 85 280 43 43 0 chrY 21211376 21211422 -30302162 + (CA)n Simple_repeat Simple_repeat 1 48 0 283 277 133 42 chrY 21211452 21211618 -30301966 - SST1 Satellite centromeric -9 1554 1374 261 329 0 0 chrY 21211782 21211852 -30301732 - SST1 Satellite centromeric -346 1217 1148 216 178 0 0 chrY 21213849 21213894 -30299690 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 186 0 0 chrY 21215590 21215633 -30297951 + (CA)n Simple_repeat Simple_repeat 1 43 0 301 312 99 49 chrY 21216749 21217114 -30296470 - SST1 Satellite centromeric -1153 410 28 186 306 0 0 chrY 21217628 21217677 -30295907 + MER5A DNA MER1_type 2 50 -139 202 267 0 0 chrY 21218055 21218115 -30295469 + (CA)n Simple_repeat Simple_repeat 1 60 0 234 250 23 0 chrY 21218208 21218296 -30295288 + (CA)n Simple_repeat Simple_repeat 1 90 0 283 353 57 40 chrY 21219016 21219546 -30294038 - SST1 Satellite centromeric -962 601 63 216 110 27 55 chrY 21220507 21220580 -30293004 + (CA)n Simple_repeat Simple_repeat 1 71 0 255 274 0 0 chrY 21220895 21220957 -30292627 - SST1 Satellite centromeric -346 1217 1156 320 291 73 55 chrY 21221445 21221734 -30291850 - SST1 Satellite centromeric -961 602 309 944 159 0 11 chrY 21222338 21222520 -30291064 + GA-rich Low_complexity Low_complexity 1 180 0 199 95 0 79 chrY 21222601 21222664 -30290920 + (CA)n Simple_repeat Simple_repeat 1 58 0 289 303 69 14 chrY 21222705 21222850 -30290734 - SST1 Satellite centromeric -25 1538 1386 472 282 92 53 chrY 21223588 21223967 -30289617 - SST1 Satellite centromeric -963 600 207 198 0 0 0 chrY 21225032 21225054 -30288530 + (A)n Simple_repeat Simple_repeat 1 22 0 249 33 0 0 chrY 21227485 21227515 -30286069 + (A)n Simple_repeat Simple_repeat 1 30 0 317 298 93 12 chrY 21227640 21227801 -30285783 - SST1 Satellite centromeric -4 1559 1386 263 342 57 46 chrY 21228518 21228977 -30284607 - SST1 Satellite centromeric -962 601 138 202 130 19 19 chrY 21230032 21230086 -30283498 + (CA)n Simple_repeat Simple_repeat 1 54 0 272 310 62 21 chrY 21230129 21230274 -30283310 - SST1 Satellite centromeric -25 1538 1388 481 315 86 59 chrY 21233412 21233971 -30279613 - SST1 Satellite centromeric -961 602 29 396 40 0 0 chrY 21234902 21234952 -30278632 + (CA)n Simple_repeat Simple_repeat 1 50 0 540 283 64 70 chrY 21235854 21236367 -30277217 - SST1 Satellite centromeric -936 627 118 312 279 109 24 chrY 21237453 21237618 -30275966 - SST1 Satellite centromeric -11 1552 1374 340 319 57 44 chrY 21238342 21238799 -30274785 - SST1 Satellite centromeric -963 600 138 180 0 0 0 chrY 21239281 21239301 -30274283 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 191 164 16 0 chrY 21239508 21239569 -30274015 + (CA)n Simple_repeat Simple_repeat 1 62 0 279 0 0 0 chrY 21240324 21240355 -30273229 + (T)n Simple_repeat Simple_repeat 1 31 0 180 200 0 0 chrY 21240570 21240630 -30272954 + (CA)n Simple_repeat Simple_repeat 1 60 0 229 287 98 28 chrY 21240667 21240810 -30272774 - SST1 Satellite centromeric -25 1538 1386 214 41 20 82 chrY 21243042 21243091 -30270493 + (CA)n Simple_repeat Simple_repeat 1 46 0 238 325 0 0 chrY 21243434 21243511 -30270073 - SST1 Satellite centromeric -324 1239 1163 401 319 52 42 chrY 21244004 21244461 -30269123 - SST1 Satellite centromeric -964 599 138 231 36 0 0 chrY 21244963 21244991 -30268593 + (T)n Simple_repeat Simple_repeat 1 28 0 201 196 20 0 chrY 21246476 21246527 -30267057 + T-rich Low_complexity Low_complexity 1 52 0 222 37 0 0 chrY 21246969 21246996 -30266588 + (A)n Simple_repeat Simple_repeat 1 27 0 298 328 67 71 chrY 21247083 21247504 -30266080 - SST1 Satellite centromeric -11 1552 1134 279 311 55 43 chrY 21247945 21248199 -30265385 - SST1 Satellite centromeric -963 600 344 189 0 0 0 chrY 21249425 21249446 -30264138 + (A)n Simple_repeat Simple_repeat 1 21 0 2492 177 45 118 chrY 21250072 21250807 -30262777 - LTR1 LTR ERV1 -104 681 1 277 282 89 24 chrY 21250979 21251103 -30262481 - LTR33A LTR ERVL -337 186 55 197 182 68 0 chrY 21251424 21251468 -30262116 - L2 LINE L2 -4 3309 3263 602 246 144 54 chrY 21251981 21252258 -30261326 - AluJo SINE Alu 0 312 11 22 35 0 0 chrY 21253928 21253957 -30259627 + AT_rich Low_complexity Low_complexity 1 29 0 210 192 0 0 chrY 21254442 21254494 -30259090 + (TA)n Simple_repeat Simple_repeat 1 52 0 342 266 66 90 chrY 21255002 21255446 -30258138 + MLT1G LTR MaLR 102 514 -28 928 214 0 0 chrY 21255945 21256132 -30257452 + AluSg/x SINE Alu 125 311 -1 1456 212 3 7 chrY 21256172 21256465 -30257119 + AluSx SINE Alu 5 296 -16 231 188 0 0 chrY 21256494 21256542 -30257042 + GA-rich Low_complexity Low_complexity 3 50 0 256 154 17 0 chrY 21256554 21256615 -30256969 - L1MA4 LINE L1 -15 6289 6223 450 273 35 0 chrY 21256617 21256789 -30256795 + L1MA4 LINE L1 5999 6176 -124 1215 232 7 45 chrY 21256836 21257146 -30256438 + AluJo SINE Alu 2 299 -13 1443 201 3 14 chrY 21257212 21257500 -30256084 - AluSx SINE Alu -15 287 3 1279 209 32 11 chrY 21257962 21258244 -30255340 + AluSg SINE Alu 1 288 -12 523 213 23 55 chrY 21260254 21260488 -30253096 + L1M4 LINE L1 5365 5601 -583 274 219 67 9 chrY 21260682 21260787 -30252797 + L1M4 LINE L1 5313 5423 -755 263 143 0 0 chrY 21260788 21260837 -30252747 - L1PA6 LINE L1 0 6154 6106 482 191 7 50 chrY 21260851 21260992 -30252592 + L1M4 LINE L1 5415 5549 -625 313 207 109 9 chrY 21261193 21261335 -30252249 + L1M4 LINE L1 5255 5423 -746 289 104 0 0 chrY 21261335 21261383 -30252201 - L1PA6 LINE L1 -1 6153 6106 503 228 67 28 chrY 21261397 21261577 -30252007 + L1M4 LINE L1 5415 5601 -573 269 206 107 11 chrY 21261737 21261857 -30251727 + L1M4 LINE L1 5254 5397 -772 293 102 0 0 chrY 21261881 21261930 -30251654 - L1PA6 LINE L1 0 6154 6106 430 210 20 60 chrY 21261944 21262128 -30251456 + L1M4 LINE L1 5415 5601 -583 261 223 109 9 chrY 21262288 21262431 -30251153 + L1MB5 LINE L1 5254 5423 -746 277 143 0 0 chrY 21262432 21262481 -30251103 - L1PA6 LINE L1 0 6154 6106 815 217 48 33 chrY 21262495 21262767 -30250817 + L1MB5 LINE L1 5415 5690 -490 1089 260 48 6 chrY 21262823 21263154 -30250430 + L1MB5 LINE L1 5817 6161 -13 824 260 25 29 chrY 21264616 21264858 -30248726 + AluJo SINE Alu 1 241 -71 21 36 0 0 chrY 21265757 21265785 -30247799 + AT_rich Low_complexity Low_complexity 1 28 0 1640 176 0 10 chrY 21266334 21266635 -30246949 - AluSg SINE Alu -12 298 1 1857 136 7 3 chrY 21268652 21268954 -30244630 + AluSc SINE Alu 1 303 -6 1849 145 3 22 chrY 21269432 21269743 -30243841 - AluSc SINE Alu -3 306 2 21 82 0 0 chrY 21271029 21271078 -30242506 + AT_rich Low_complexity Low_complexity 1 49 0 342 0 0 0 chrY 21271107 21271145 -30242439 + (CA)n Simple_repeat Simple_repeat 2 39 0 942 224 76 22 chrY 21271621 21271898 -30241686 - AluJb SINE Alu -9 293 2 371 132 0 44 chrY 21272089 21272157 -30241427 + MER1B DNA MER1_type 211 275 -64 253 203 0 31 chrY 21272305 21272369 -30241215 + MER1B DNA MER1_type 256 317 -16 510 222 0 0 chrY 21272388 21272487 -30241097 - AluJ/FLAM SINE Alu -211 101 3 21 0 0 0 chrY 21277355 21277376 -30236208 + AT_rich Low_complexity Low_complexity 1 21 0 1593 170 14 3 chrY 21277515 21277798 -30235786 - AluSx SINE Alu -26 286 1 1925 148 0 0 chrY 21278169 21278452 -30235132 + AluSq SINE Alu 1 283 -30 286 298 136 36 chrY 21279170 21279449 -30234135 + L2 LINE L2 2196 2502 -812 195 152 0 0 chrY 21280574 21280620 -30232964 + T-rich Low_complexity Low_complexity 3 48 0 2606 10 48 0 chrY 21280946 21281240 -30232344 - AluYb8 SINE Alu -10 308 1 1520 188 28 0 chrY 21281562 21281844 -30231740 - AluSg SINE Alu -18 292 3 7371 50 7 5 chrY 21283289 21284290 -30229294 - L1PA4 LINE L1 -894 5252 4250 6822 48 16 0 chrY 21284290 21285159 -30228425 + L1PA4 LINE L1 5262 6144 -11 246 136 0 0 chrY 21285159 21285203 -30228381 + (TA)n Simple_repeat Simple_repeat 2 45 0 4805 136 16 8 chrY 21285204 21286041 -30227543 + L1MA2 LINE L1 5329 6171 -133 2005 67 75 0 chrY 21286830 21287098 -30226486 + AluY SINE Alu 1 288 -23 319 274 21 0 chrY 21287413 21287508 -30226076 + FLAM_C SINE Alu 13 109 -24 289 149 15 45 chrY 21287520 21287587 -30225997 - MER1B DNA MER1_type -13 320 256 1251 181 49 11 chrY 21287733 21287998 -30225586 - MER1B DNA MER1_type -64 275 1 675 236 34 46 chrY 21288104 21288341 -30225243 + AluJb SINE Alu 1 234 -78 204 200 0 0 chrY 21288844 21288889 -30224695 + (TA)n Simple_repeat Simple_repeat 1 45 0 25 95 0 0 chrY 21288894 21288968 -30224616 + AT_rich Low_complexity Low_complexity 1 74 0 493 97 0 0 chrY 21291138 21291200 -30222384 + Alu SINE Alu 17 78 -232 24 0 0 0 chrY 21291418 21291442 -30222142 + AT_rich Low_complexity Low_complexity 1 24 0 1677 134 0 0 chrY 21291824 21292062 -30221522 - AluSc SINE Alu -45 264 27 2789 148 2 8 chrY 21292278 21292748 -30220836 + LTR12 LTR ERV1 267 712 -2 8286 161 26 21 chrY 21292752 21295139 -30218445 + HERV9 LTR ERV1 58 2481 -5776 508 163 0 0 chrY 21295139 21295264 -30218320 - AluSp/q SINE Alu 0 330 206 8286 161 26 21 chrY 21295264 21295886 -30217698 + HERV9 LTR ERV1 2481 3099 -5158 297 161 74 12 chrY 21345889 21345970 -30167614 + L1ME3A LINE L1 6078 6163 -7 21 0 0 0 chrY 21346329 21346350 -30167234 + AT_rich Low_complexity Low_complexity 1 21 0 369 145 32 16 chrY 21346624 21346686 -30166898 + Charlie5 DNA MER1_type 5 67 -2545 1828 170 21 0 chrY 21347537 21347826 -30165758 - AluJb SINE Alu -17 295 1 30 0 0 0 chrY 21349791 21349821 -30163763 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chrY 21350090 21350114 -30163470 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1474 186 7 7 chrY 21350114 21350388 -30163196 - AluSg SINE Alu -32 278 5 24 0 0 0 chrY 21350398 21350422 -30163162 + AT_rich Low_complexity Low_complexity 1 24 0 2016 133 3 0 chrY 21352432 21352740 -30160844 + AluSc SINE Alu 1 309 0 201 245 10 41 chrY 21354501 21354599 -30158985 + (CATA)n Simple_repeat Simple_repeat 2 96 0 278 161 25 25 chrY 21355050 21355086 -30158498 - L1MA7 LINE L1 -29 6262 6227 691 214 114 68 chrY 21355086 21355366 -30158218 - AluJb SINE Alu -8 294 2 278 161 25 25 chrY 21355366 21355410 -30158174 - L1MA7 LINE L1 -63 6228 6182 293 108 0 135 chrY 21355557 21355631 -30157953 + MER1B DNA MER1_type 211 274 -65 281 122 20 0 chrY 21355795 21355844 -30157740 + MER1B DNA MER1_type 277 326 -13 485 252 0 9 chrY 21355847 21355954 -30157630 - FLAM_C SINE Alu -25 118 13 377 305 119 93 chrY 21357408 21358061 -30155523 - L1M2 LINE L1 -5708 1141 472 1700 184 0 13 chrY 21360245 21360269 -30153315 - AluSx SINE Alu -7 305 282 258 32 0 0 chrY 21360269 21360300 -30153284 + (TG)n Simple_repeat Simple_repeat 2 32 0 1700 184 0 13 chrY 21360300 21360584 -30153000 - AluSx SINE Alu -30 282 1 1936 162 7 0 chrY 21362349 21362645 -30150939 - AluSx SINE Alu -14 298 1 183 42 0 0 chrY 21362645 21362669 -30150915 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1008 249 15 15 chrY 21362669 21362938 -30150646 - AluJo SINE Alu -31 281 13 470 257 129 7 chrY 21366786 21366926 -30146658 + FAM SINE Alu 2 158 -17 489 99 0 0 chrY 21366926 21367007 -30146577 + (TC)n Simple_repeat Simple_repeat 1 81 0 347 118 9 55 chrY 21367498 21367608 -30145976 + (TA)n Simple_repeat Simple_repeat 2 106 0 1176 170 86 116 chrY 21369196 21369660 -30143924 - LTR7 LTR ERV1 0 450 1 2519 66 0 0 chrY 21371026 21371329 -30142255 - AluY SINE Alu -8 303 1 937 266 4 35 chrY 21374665 21374924 -30138660 - AluJo SINE Alu -54 258 8 405 109 6 14 chrY 21375637 21375729 -30137855 - L1P5 LINE L1 -483 5668 5587 353 105 0 0 chrY 21375733 21375790 -30137794 + L1MA1 LINE L1 5725 5781 -521 1259 20 0 0 chrY 21375790 21375933 -30137651 + L1PA2 LINE L1 6006 6152 -3 3299 113 11 4 chrY 21375935 21376459 -30137125 + L1MA1 LINE L1 5769 6296 -6 23 0 0 0 chrY 21376459 21376482 -30137102 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 21376550 21376573 -30137011 + AT_rich Low_complexity Low_complexity 1 23 0 195 203 0 0 chrY 21376592 21376651 -30136933 + (CA)n Simple_repeat Simple_repeat 2 60 0 197 163 20 0 chrY 21377738 21377787 -30135797 + (TA)n Simple_repeat Simple_repeat 1 50 0 370 408 25 0 chrY 21377800 21377957 -30135627 - L2 LINE L2 -21 3251 3091 237 264 97 0 chrY 21378382 21378454 -30135130 - MIR SINE MIR -98 164 86 24 53 0 0 chrY 21379033 21379071 -30134513 + AT_rich Low_complexity Low_complexity 1 38 0 258 331 35 55 chrY 21380279 21380424 -30133160 - MIR SINE MIR -56 206 65 269 154 39 13 chrY 21380791 21380869 -30132715 + CT-rich Low_complexity Low_complexity 1 80 0 244 287 37 93 chrY 21381731 21381839 -30131745 + MER5B DNA MER1_type 5 106 -72 407 322 60 20 chrY 21381994 21382143 -30131441 + MIR3 SINE MIR 11 165 -43 438 295 51 27 chrY 21383223 21383559 -30130025 + L1MC5 LINE L1 6876 7219 -742 403 275 44 11 chrY 21383697 21383879 -30129705 + L1MC5 LINE L1 7256 7443 -518 320 291 60 64 chrY 21383977 21384259 -30129325 + L1MC5 LINE L1 7644 7924 -37 258 364 93 0 chrY 21384457 21384595 -30128989 + LTR33 LTR ERVL 1 151 -370 738 310 118 6 chrY 21384595 21384927 -30128657 + LTR33 LTR ERVL 4 372 -149 241 191 0 0 chrY 21384923 21384965 -30128619 + LTR33 LTR ERVL 478 519 -2 * 188 322 34 51 chrY 21384966 21385084 -30128500 + L2 LINE L2 3193 3308 -5 5344 94 1 5 chrY 21385217 21385972 -30127612 - HERVK9 LTR ERVK -3897 2019 1268 3683 111 28 3 chrY 21385972 21386550 -30127034 - HERVK9 LTR ERVK -5324 592 1 3412 108 28 4 chrY 21386550 21386607 -30126977 - MER9 LTR ERVK 0 511 457 342 0 0 0 chrY 21386607 21386645 -30126939 + (CA)n Simple_repeat Simple_repeat 1 38 0 3412 108 28 4 chrY 21386645 21387086 -30126498 - MER9 LTR ERVK -54 457 1 186 43 0 0 chrY 21387543 21387566 -30126018 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 372 366 84 36 chrY 21388487 21388796 -30124788 + L2 LINE L2 2944 3267 -5 1452 217 11 3 chrY 21388997 21389283 -30124301 + AluJb SINE Alu 1 288 -24 1427 212 10 14 chrY 21389477 21389774 -30123810 - AluSx SINE Alu -16 296 1 243 134 0 45 chrY 21390055 21390122 -30123462 + (TA)n Simple_repeat Simple_repeat 1 64 0 235 342 114 11 chrY 21390439 21390623 -30122961 - L3 LINE CR1 -1180 397 195 21 36 0 0 chrY 21391370 21391398 -30122186 + AT_rich Low_complexity Low_complexity 1 28 0 498 247 145 38 chrY 21392667 21392902 -30120682 + MIR SINE MIR 2 261 -1 191 304 157 10 chrY 21393373 21393475 -30120109 + MIR SINE MIR 64 180 -82 489 227 27 96 chrY 21393558 21393778 -30119806 - MER46C DNA MER2_type -129 209 5 193 304 36 0 chrY 21393795 21393851 -30119733 + MIR SINE MIR 204 261 -1 1685 194 0 25 chrY 21395542 21395862 -30117722 - AluSx SINE Alu 0 312 1 1135 194 40 80 chrY 21396085 21396461 -30117123 + LTR61 LTR ERV1 235 595 0 1639 237 0 13 chrY 21396465 21396840 -30116744 + HERV3 LTR ERV1 5 374 -8052 4558 265 40 14 chrY 21396907 21398171 -30115413 + HERV3 LTR ERV1 363 1658 -6768 * 6254 270 17 17 chrY 21398169 21400851 -30112733 + HERV3 LTR ERV1 1986 4760 -3666 491 258 0 8 chrY 21400935 21401063 -30112521 + HERV3 LTR ERV1 8283 8409 -17 1736 198 71 41 chrY 21401083 21401592 -30111992 + LTR61 LTR ERV1 72 595 0 954 173 60 0 chrY 21401610 21401778 -30111806 - AluSg/x SINE Alu -15 295 118 17755 54 4 0 chrY 21401787 21404848 -30108736 - L1PA4 LINE L1 0 6155 3085 863 130 7 0 chrY 21404848 21404986 -30108598 - L1P LINE L1 -6007 139 1 * 2693 168 25 25 chrY 21404982 21405577 -30108007 - L1PA10 LINE L1 -184 5984 5390 804 107 16 0 chrY 21406246 21406367 -30107217 - LTR15 LTR ERV1 -16 477 355 2055 126 27 4 chrY 21406369 21406880 -30106704 - HERV15 LTR ERV1 -1093 7642 6972 200 33 0 33 chrY 21406880 21406910 -30106674 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2055 126 27 4 chrY 21406910 21407118 -30106466 - HERV15 LTR ERV1 -1763 6972 6770 442 120 13 0 chrY 21407120 21407195 -30106389 - LTR15 LTR ERV1 -417 76 1 380 309 138 20 chrY 21407207 21407453 -30106131 - L1M4 LINE L1 -5292 1250 976 21 36 0 0 chrY 21407493 21407521 -30106063 + AT_rich Low_complexity Low_complexity 1 28 0 335 315 54 8 chrY 21408495 21408625 -30104959 - L2 LINE L2 -355 2958 2823 198 0 0 0 chrY 21409284 21409306 -30104278 + (TG)n Simple_repeat Simple_repeat 1 22 0 3182 34 0 0 chrY 21409313 21409693 -30103891 - L1PA2 LINE L1 0 6155 5776 3471 15 0 0 chrY 21409693 21410104 -30103480 + L1PA2 LINE L1 5368 5778 -377 5178 66 5 6 chrY 21410786 21411662 -30101922 - L1PA4 LINE L1 -176 5979 5101 * 14191 96 3 34 chrY 21411651 21413849 -30099735 - L1P LINE L1 -4009 2137 7 914 148 15 0 chrY 21413851 21413986 -30099598 - AluSq/x SINE Alu -175 137 1 197 234 39 104 chrY 21414209 21414286 -30099298 + MIR SINE MIR 153 224 -38 1915 122 4 0 chrY 21414841 21415103 -30098481 + AluY SINE Alu 47 309 -2 9609 35 0 0 chrY 21415103 21416395 -30097189 + L1P1 LINE L1 4163 5454 -701 8611 60 2 3 chrY 21416395 21418284 -30095300 + L1PA5 LINE L1 4261 6152 -2 265 289 60 0 chrY 21418779 21418862 -30094722 - L2 LINE L2 -20 3293 3206 249 109 0 0 chrY 21420417 21420463 -30093121 + (A)n Simple_repeat Simple_repeat 1 46 0 209 247 11 34 chrY 21421186 21421275 -30092309 + GA-rich Low_complexity Low_complexity 4 90 0 837 243 64 94 chrY 21423426 21423800 -30089784 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chrY 21425257 21425280 -30088304 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrY 21427282 21427303 -30086281 + AT_rich Low_complexity Low_complexity 1 21 0 328 124 5 240 chrY 21428112 21428329 -30085255 + MER53 DNA DNA 23 188 -1 2386 74 0 7 chrY 21428404 21428703 -30084881 + AluY SINE Alu 1 297 -14 225 301 0 32 chrY 21429553 21429646 -30083938 - MIR SINE MIR -49 213 124 537 322 17 13 chrY 21430012 21430242 -30083342 + L1MDa LINE L1 119 349 -6191 656 216 0 0 chrY 21430280 21430405 -30083179 + LTR4 LTR ERV1 472 596 0 29960 175 15 9 chrY 21430406 21435777 -30077807 + HERV3 LTR ERV1 1 5402 -3024 15350 158 29 15 chrY 21435779 21438551 -30075033 + HERV3 LTR ERV1 5616 8426 0 2504 204 68 7 chrY 21438551 21439111 -30074473 + LTR4 LTR ERV1 1 594 -2 190 309 100 36 chrY 21439418 21439528 -30074056 - L2 LINE L2 -27 3286 3170 1423 184 8 0 chrY 21439747 21439986 -30073598 + AluSg SINE Alu 34 274 -36 333 0 0 0 chrY 21439986 21440023 -30073561 + (TAA)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chrY 21441549 21441581 -30072003 + AT_rich Low_complexity Low_complexity 1 32 0 1025 217 59 88 chrY 21442360 21442734 -30070850 + MLT1A1 LTR MaLR 3 365 0 1834 136 4 4 chrY 21443787 21444067 -30069517 - AluY SINE Alu -5 306 27 24 32 0 0 chrY 21446379 21446410 -30067174 + AT_rich Low_complexity Low_complexity 1 31 0 245 167 103 0 chrY 21446888 21446966 -30066618 + (CAAAT)n Simple_repeat Simple_repeat 3 88 0 268 197 42 0 chrY 21447334 21447405 -30066179 - MER53 DNA DNA -1 188 115 2029 184 110 7 chrY 21448726 21449131 -30064453 + MER9 LTR ERVK 1 461 -50 315 0 0 0 chrY 21449131 21449166 -30064418 + (TG)n Simple_repeat Simple_repeat 2 36 0 2029 184 110 7 chrY 21449166 21449223 -30064361 + MER9 LTR ERVK 461 511 0 7494 141 49 48 chrY 21449223 21449989 -30063595 + HERVK9 LTR ERVK 1 829 -5087 204 200 0 83 chrY 21449989 21450049 -30063535 + MER5B DNA MER1_type 55 109 -69 7494 141 49 48 chrY 21450049 21450719 -30062865 + HERVK9 LTR ERVK 829 1497 -4419 * 11678 139 37 44 chrY 21450710 21452870 -30060714 + HERVK9 LTR ERVK 3773 5916 0 2476 163 71 4 chrY 21452870 21453349 -30060235 + MER9 LTR ERVK 1 511 0 875 223 12 54 chrY 21453559 21453895 -30059689 + L1MDa LINE L1 76 397 -6143 1720 173 17 7 chrY 21453998 21454293 -30059291 - AluSp SINE Alu -15 298 1 1040 277 69 39 chrY 21454683 21455437 -30058147 + L1M4 LINE L1 4428 5204 -942 568 192 149 48 chrY 21455441 21455649 -30057935 + MER52C LTR ERV1 890 1118 -160 1555 189 22 6 chrY 21455685 21456002 -30057582 - LTR22 LTR ERVK -4 576 255 519 168 35 0 chrY 21456019 21456132 -30057452 - LTR22 LTR ERVK -463 117 1 * 813 219 18 0 chrY 21456132 21456294 -30057290 + MER52C LTR ERV1 1114 1278 0 335 340 82 39 chrY 21456317 21456596 -30056988 - L1MDa LINE L1 -5469 1071 781 * 1005 299 74 21 chrY 21456576 21457088 -30056496 - L1MDa LINE L1 -5967 573 35 1496 204 36 0 chrY 21457656 21457935 -30055649 - AluSx SINE Alu -23 289 1 38943 89 2 4 chrY 21458513 21464655 -30048929 + L1PA5 LINE L1 11 6145 -9 259 194 42 0 chrY 21464655 21464875 -30048709 + (TA)n Simple_repeat Simple_repeat 1 229 0 183 200 18 27 chrY 21464905 21465015 -30048569 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 279 0 0 0 chrY 21465263 21465294 -30048290 + (TG)n Simple_repeat Simple_repeat 2 32 0 1417 220 21 0 chrY 21465738 21466024 -30047560 + AluSx SINE Alu 5 296 -16 23 78 0 0 chrY 21466618 21466669 -30046915 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chrY 21467463 21467492 -30046092 + AT_rich Low_complexity Low_complexity 1 29 0 657 273 36 0 chrY 21467589 21467783 -30045801 + MER2 DNA MER2_type 7 207 -138 219 288 62 0 chrY 21468056 21468136 -30045448 - MIR SINE MIR -1 261 177 1155 193 9 0 chrY 21468141 21468353 -30045231 - AluSq SINE Alu -19 294 81 21 36 0 0 chrY 21469226 21469254 -30044330 + AT_rich Low_complexity Low_complexity 1 28 0 379 270 40 10 chrY 21469257 21469357 -30044227 - AluJ SINE Alu -2 300 198 2018 259 8 4 chrY 21469370 21469852 -30043732 + MER1A DNA MER1_type 28 511 -18 210 160 0 0 chrY 21470354 21470404 -30043180 + (TG)n Simple_repeat Simple_repeat 1 50 0 775 277 20 5 chrY 21470453 21470655 -30042929 - AluJ SINE Alu -107 205 1 25 51 0 0 chrY 21470779 21470818 -30042766 + AT_rich Low_complexity Low_complexity 1 39 0 383 266 11 21 chrY 21471055 21471149 -30042435 - AluJo SINE Alu -121 181 89 21 36 0 0 chrY 21473247 21473275 -30040309 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chrY 21475984 21476041 -30037543 + AT_rich Low_complexity Low_complexity 1 57 0 925 274 90 4 chrY 21476141 21476418 -30037166 + AluSx SINE Alu 1 301 -11 36 40 0 0 chrY 21476553 21476603 -30036981 + AT_rich Low_complexity Low_complexity 1 50 0 994 194 0 0 chrY 21476743 21476908 -30036676 - AluSq SINE Alu -20 293 129 318 148 0 0 chrY 21476917 21476971 -30036613 + (TG)n Simple_repeat Simple_repeat 1 54 0 779 172 0 0 chrY 21476971 21477099 -30036485 - AluSq SINE Alu -184 129 2 244 256 47 47 chrY 21477221 21477350 -30036234 + MER20 DNA MER1_type 91 219 0 516 202 266 0 chrY 21477408 21477532 -30036052 + AluSq SINE Alu 137 293 -20 2369 274 21 7 chrY 21477727 21478310 -30035274 - MER52A LTR ERV1 -4 1751 1161 505 127 0 0 chrY 21478311 21478390 -30035194 + HERVL LTR ERVL 710 788 -4866 1966 97 9 59 chrY 21478785 21479106 -30034478 - AluY SINE Alu -6 305 1 278 246 0 0 chrY 21479358 21479415 -30034169 - MER20 DNA MER1_type -73 146 90 290 276 42 120 chrY 21479446 21479663 -30033921 + L2 LINE L2 2763 2962 -352 522 40 27 0 chrY 21479748 21479822 -30033762 - L1PA6 LINE L1 -1 6153 6078 21 89 0 0 chrY 21480811 21480867 -30032717 + AT_rich Low_complexity Low_complexity 1 56 0 300 257 112 27 chrY 21480980 21481167 -30032417 + L1M4c LINE L1 2295 2497 -3887 1484 244 90 24 chrY 21481285 21481323 -30032261 + L1M4 LINE L1 1295 1329 -5317 1696 171 11 0 chrY 21481323 21481587 -30031997 + AluSc SINE Alu 21 287 -22 1484 244 90 24 chrY 21481587 21482279 -30031305 + L1M4 LINE L1 1329 2078 -4568 784 336 27 5 chrY 21483314 21483677 -30029907 - MER52A LTR ERV1 -506 1249 923 1514 211 10 0 chrY 21483782 21484080 -30029504 + AluSp SINE Alu 2 302 -11 192 77 0 0 chrY 21484087 21484113 -30029471 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 250 223 10 32 chrY 21484198 21484511 -30029073 + (CCCTAA)n Simple_repeat Simple_repeat 1 305 0 258 236 0 33 chrY 21484524 21484708 -30028876 + (CCCTAA)n Simple_repeat Simple_repeat 1 177 0 289 182 15 23 chrY 21484778 21484910 -30028674 + (CCCTAA)n Simple_repeat Simple_repeat 4 134 0 345 168 0 48 chrY 21484945 21485112 -30028472 + (CCCTAA)n Simple_repeat Simple_repeat 6 164 0 333 210 18 18 chrY 21485175 21485342 -30028242 + (CCCTAA)n Simple_repeat Simple_repeat 6 172 0 788 316 54 14 chrY 21485658 21486230 -30027354 + L1M4 LINE L1 4303 4897 -1747 6293 27 0 0 chrY 21486878 21487611 -30025973 + L1PA2 LINE L1 5423 6155 0 1006 229 97 8 chrY 21487888 21488155 -30025429 + AluJo SINE Alu 19 309 -3 306 250 42 0 chrY 21488428 21488524 -30025060 + MER31-int LTR ERV1 3521 3620 -1316 2293 161 28 90 chrY 21488530 21489146 -30024438 + MER4B LTR ERV1 9 754 -25 316 296 24 29 chrY 21490196 21490402 -30023182 + L1M4 LINE L1 4305 4509 -1637 935 227 107 12 chrY 21490404 21490646 -30022938 + AluJo SINE Alu 1 265 -47 415 296 132 22 chrY 21490806 21491215 -30022369 + L1M4 LINE L1 4728 5181 -965 1360 216 0 18 chrY 21491227 21491510 -30022074 + AluSx SINE Alu 5 282 -30 1076 74 0 0 chrY 21491510 21491645 -30021939 + AluY SINE Alu 166 300 -11 356 212 99 13 chrY 21491647 21491820 -30021764 + L1M4 LINE L1 5197 5381 -765 5547 116 25 7 chrY 21492340 21493642 -30019942 - L1PA8 LINE L1 -6 6166 4826 1466 216 9 23 chrY 21493657 21494005 -30019579 - L1P LINE L1 -3793 2353 2011 192 40 0 0 chrY 21494005 21494030 -30019554 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 642 209 0 39 chrY 21494031 21494184 -30019400 - AluJo/FRAM SINE Alu -19 283 137 396 107 0 0 chrY 21494184 21494240 -30019344 - AluY SINE Alu -166 135 80 * 1821 145 33 33 chrY 21494237 21494569 -30019015 + LTR22B LTR ERVK 127 458 -34 346 269 46 15 chrY 21494767 21494897 -30018687 + L1MC3 LINE L1 5885 6018 -1767 1742 174 3 10 chrY 21495024 21495328 -30018256 + AluY SINE Alu 1 302 -9 563 167 9 9 chrY 21495430 21495544 -30018040 - L1MB3 LINE L1 -2 6181 6068 744 176 60 55 chrY 21495544 21495726 -30017858 - L1MB3 LINE L1 -621 5553 5371 2600 240 48 9 chrY 21495738 21496661 -30016923 + L1MB5 LINE L1 5083 6038 -136 1958 238 60 61 chrY 21496830 21497565 -30016019 - MER50 LTR ERV1 0 734 1 745 252 59 71 chrY 21498350 21498759 -30014825 + L1ME1 LINE L1 5584 5987 -179 229 305 12 12 chrY 21500019 21500101 -30013483 + HAL1 LINE L1 1828 1909 -598 392 50 0 75 chrY 21500151 21500231 -30013353 + (TTTAA)n Simple_repeat Simple_repeat 3 76 0 23 33 0 0 chrY 21500648 21500678 -30012906 + AT_rich Low_complexity Low_complexity 1 30 0 240 288 181 54 chrY 21501552 21501757 -30011827 - MIR SINE MIR -1 261 31 4361 101 2 0 chrY 21502639 21503225 -30010359 + LTR14C LTR ERVK 1 587 0 394 121 0 0 chrY 21503472 21503538 -30010046 + Alu SINE Alu 237 302 0 32062 134 8 19 chrY 21503576 21509459 -30004125 + L1PA6 LINE L1 11 5828 -326 21 57 0 0 chrY 21509467 21509502 -30004082 + AT_rich Low_complexity Low_complexity 1 35 0 781 246 148 8 chrY 21509688 21509924 -30003660 - AluJo SINE Alu -28 284 16 1365 282 68 30 chrY 21509927 21510662 -30002922 - L1M4c LINE L1 -4490 1894 1132 425 320 61 47 chrY 21511139 21511667 -30001917 - SST1 Satellite centromeric -963 600 66 198 0 0 0 chrY 21512624 21512646 -30000938 + (CA)n Simple_repeat Simple_repeat 1 22 0 422 313 71 44 chrY 21514775 21515296 -29998288 - SST1 Satellite centromeric -963 600 66 205 250 0 0 chrY 21516275 21516335 -29997249 + (CA)n Simple_repeat Simple_repeat 1 60 0 611 294 68 50 chrY 21517339 21517842 -29995742 - SST1 Satellite centromeric -965 598 87 246 81 0 0 chrY 21518833 21518870 -29994714 + (CA)n Simple_repeat Simple_repeat 2 38 0 246 146 0 0 chrY 21519082 21519123 -29994461 - TAR1 Satellite telomeric -83 2028 1988 1841 157 0 0 chrY 21520298 21520592 -29992992 + AluY SINE Alu 1 294 -17 252 158 0 0 chrY 21522282 21522339 -29991245 + (CA)n Simple_repeat Simple_repeat 2 58 0 296 303 88 72 chrY 21523253 21523573 -29990011 - SST1 Satellite centromeric -76 1487 1163 429 317 64 52 chrY 21524057 21524590 -29988994 - SST1 Satellite centromeric -962 601 63 231 61 0 0 chrY 21525562 21525595 -29987989 + (CA)n Simple_repeat Simple_repeat 2 34 0 315 293 81 68 chrY 21526472 21526854 -29986730 - SST1 Satellite centromeric -1039 524 138 182 105 26 0 chrY 21527706 21527744 -29985840 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7353 57 7 3 chrY 21527907 21528801 -29984783 - MER11D LTR ERVK 0 897 1 292 300 61 71 chrY 21528933 21529326 -29984258 - SST1 Satellite centromeric -27 1536 1148 279 71 0 0 chrY 21531306 21531348 -29982236 + (CA)n Simple_repeat Simple_repeat 1 42 0 281 326 0 0 chrY 21531682 21531774 -29981810 - SST1 Satellite centromeric -324 1239 1148 337 323 64 51 chrY 21532221 21532753 -29980831 - SST1 Satellite centromeric -962 601 63 210 176 0 0 chrY 21533730 21533781 -29979803 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 284 70 65 chrY 21534699 21534928 -29978656 - SST1 Satellite centromeric -962 601 372 389 324 47 54 chrY 21537103 21537619 -29975965 - SST1 Satellite centromeric -967 596 85 280 43 43 0 chrY 21538636 21538682 -29974902 + (CA)n Simple_repeat Simple_repeat 1 48 0 283 277 133 42 chrY 21538712 21538878 -29974706 - SST1 Satellite centromeric -9 1554 1374 261 329 0 0 chrY 21539042 21539112 -29974472 - SST1 Satellite centromeric -346 1217 1148 216 178 0 0 chrY 21541109 21541154 -29972430 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 186 0 0 chrY 21542850 21542893 -29970691 + (CA)n Simple_repeat Simple_repeat 1 43 0 301 312 99 49 chrY 21544009 21544374 -29969210 - SST1 Satellite centromeric -1153 410 28 186 306 0 0 chrY 21544888 21544937 -29968647 + MER5A DNA MER1_type 2 50 -139 202 267 0 0 chrY 21545315 21545375 -29968209 + (CA)n Simple_repeat Simple_repeat 1 60 0 234 250 23 0 chrY 21545468 21545556 -29968028 + (CA)n Simple_repeat Simple_repeat 1 90 0 283 353 57 40 chrY 21546276 21546806 -29966778 - SST1 Satellite centromeric -962 601 63 216 110 27 55 chrY 21547767 21547840 -29965744 + (CA)n Simple_repeat Simple_repeat 1 71 0 255 274 0 0 chrY 21548155 21548217 -29965367 - SST1 Satellite centromeric -346 1217 1156 320 291 73 55 chrY 21548705 21548994 -29964590 - SST1 Satellite centromeric -961 602 309 868 154 0 28 chrY 21549596 21549778 -29963806 + GA-rich Low_complexity Low_complexity 3 179 0 199 95 0 79 chrY 21549856 21549919 -29963665 + (CA)n Simple_repeat Simple_repeat 1 58 0 289 303 69 14 chrY 21549960 21550105 -29963479 - SST1 Satellite centromeric -25 1538 1386 472 282 92 53 chrY 21550843 21551222 -29962362 - SST1 Satellite centromeric -963 600 207 198 0 0 0 chrY 21552287 21552309 -29961275 + (A)n Simple_repeat Simple_repeat 1 22 0 240 35 0 0 chrY 21554740 21554769 -29958815 + (A)n Simple_repeat Simple_repeat 1 29 0 317 298 93 12 chrY 21554894 21555055 -29958529 - SST1 Satellite centromeric -4 1559 1386 263 342 57 46 chrY 21555772 21556231 -29957353 - SST1 Satellite centromeric -962 601 138 202 130 19 19 chrY 21557285 21557339 -29956245 + (CA)n Simple_repeat Simple_repeat 1 54 0 272 310 62 21 chrY 21557382 21557527 -29956057 - SST1 Satellite centromeric -25 1538 1388 462 315 86 59 chrY 21560665 21561224 -29952360 - SST1 Satellite centromeric -961 602 29 378 42 0 0 chrY 21562155 21562203 -29951381 + (CA)n Simple_repeat Simple_repeat 1 48 0 521 283 64 70 chrY 21563105 21563618 -29949966 - SST1 Satellite centromeric -936 627 118 302 279 109 24 chrY 21564704 21564869 -29948715 - SST1 Satellite centromeric -11 1552 1374 311 315 61 48 chrY 21565593 21566050 -29947534 - SST1 Satellite centromeric -963 600 138 180 0 0 0 chrY 21566532 21566552 -29947032 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 191 164 16 0 chrY 21566759 21566820 -29946764 + (CA)n Simple_repeat Simple_repeat 1 62 0 279 0 0 0 chrY 21567575 21567606 -29945978 + (T)n Simple_repeat Simple_repeat 1 31 0 180 200 0 0 chrY 21567821 21567881 -29945703 + (CA)n Simple_repeat Simple_repeat 1 60 0 214 41 20 82 chrY 21570293 21570342 -29943242 + (CA)n Simple_repeat Simple_repeat 1 46 0 235 325 0 0 chrY 21570685 21570762 -29942822 - SST1 Satellite centromeric -324 1239 1163 375 319 52 42 chrY 21571256 21571713 -29941871 - SST1 Satellite centromeric -964 599 138 231 36 0 0 chrY 21572215 21572243 -29941341 + (T)n Simple_repeat Simple_repeat 1 28 0 201 196 20 0 chrY 21573728 21573779 -29939805 + T-rich Low_complexity Low_complexity 1 52 0 222 37 0 0 chrY 21574221 21574248 -29939336 + (A)n Simple_repeat Simple_repeat 1 27 0 269 333 67 71 chrY 21574335 21574756 -29938828 - SST1 Satellite centromeric -11 1552 1134 269 311 55 43 chrY 21575197 21575451 -29938133 - SST1 Satellite centromeric -963 600 344 189 0 0 0 chrY 21576677 21576698 -29936886 + (A)n Simple_repeat Simple_repeat 1 21 0 2460 177 45 118 chrY 21577324 21578059 -29935525 - LTR1 LTR ERV1 -104 681 1 277 282 89 24 chrY 21578231 21578355 -29935229 - LTR33A LTR ERVL -337 186 55 608 246 144 54 chrY 21579233 21579510 -29934074 - AluJo SINE Alu 0 312 11 22 35 0 0 chrY 21581180 21581209 -29932375 + AT_rich Low_complexity Low_complexity 1 29 0 210 192 0 0 chrY 21581694 21581746 -29931838 + (TA)n Simple_repeat Simple_repeat 1 52 0 325 264 66 90 chrY 21582253 21582697 -29930887 + MLT1G LTR MaLR 102 514 -28 914 214 0 0 chrY 21583196 21583383 -29930201 + AluSg/x SINE Alu 125 311 -1 1428 212 3 7 chrY 21583423 21583716 -29929868 + AluSx SINE Alu 5 296 -16 231 188 0 0 chrY 21583745 21583793 -29929791 + GA-rich Low_complexity Low_complexity 3 50 0 275 154 17 0 chrY 21583805 21583866 -29929718 - L1MA4 LINE L1 -15 6287 6223 515 273 35 0 chrY 21583868 21584040 -29929544 + L1MA4 LINE L1 5999 6176 -124 1269 229 7 45 chrY 21584087 21584397 -29929187 + AluJo SINE Alu 2 299 -3 1438 197 3 14 chrY 21584463 21584747 -29928837 - AluSx SINE Alu -25 287 7 1262 204 33 11 chrY 21585221 21585495 -29928089 + AluSg SINE Alu 9 288 -22 550 222 79 56 chrY 21587409 21587739 -29925845 + L1M4 LINE L1 5254 5601 -577 313 219 61 26 chrY 21587924 21588038 -29925546 + L1M4 LINE L1 5306 5423 -755 283 143 0 0 chrY 21588039 21588088 -29925496 - L1PA6 LINE L1 0 6154 6106 525 218 23 45 chrY 21588102 21588298 -29925286 + L1M4 LINE L1 5415 5617 -553 721 191 119 90 chrY 21588446 21588586 -29924998 + L1M4 LINE L1 5257 5391 -787 309 104 0 0 chrY 21588586 21588634 -29924950 - L1PA6 LINE L1 -1 6153 6106 721 191 119 90 chrY 21588634 21588828 -29924756 + L1M4 LINE L1 5391 5601 -577 606 203 86 102 chrY 21588988 21589132 -29924452 + L1M3 LINE L1 5254 5399 -779 314 102 0 0 chrY 21589132 21589181 -29924403 - L1PA6 LINE L1 0 6154 6106 606 203 86 102 chrY 21589181 21589379 -29924205 + L1M3 LINE L1 5399 5601 -577 306 210 196 7 chrY 21589539 21589682 -29923902 + L1MB5 LINE L1 5254 5423 -761 298 143 0 0 chrY 21589683 21589732 -29923852 - L1PA6 LINE L1 0 6154 6106 917 217 48 33 chrY 21589746 21590018 -29923566 + L1MB5 LINE L1 5415 5690 -490 1212 260 48 6 chrY 21590074 21590405 -29923179 + L1MB5 LINE L1 5817 6161 -13 825 257 25 30 chrY 21591868 21592105 -29921479 + AluJo SINE Alu 2 237 -75 21 36 0 0 chrY 21593008 21593036 -29920548 + AT_rich Low_complexity Low_complexity 1 28 0 1659 176 0 10 chrY 21593585 21593886 -29919698 - AluSg SINE Alu -12 298 1 1891 136 7 3 chrY 21595903 21596205 -29917379 + AluSc SINE Alu 1 303 -6 1718 144 3 25 chrY 21596676 21596998 -29916586 - AluSc SINE Alu 0 317 2 21 82 0 0 chrY 21598284 21598333 -29915251 + AT_rich Low_complexity Low_complexity 1 49 0 360 0 0 0 chrY 21598362 21598402 -29915182 + (CA)n Simple_repeat Simple_repeat 2 41 0 253 168 226 66 chrY 21598843 21598878 -29914706 - L1MA7 LINE L1 -30 6261 6233 928 224 76 22 chrY 21598878 21599155 -29914429 - AluJb SINE Alu -9 293 2 253 168 226 66 chrY 21599155 21599256 -29914328 - L1MA7 LINE L1 -58 6233 6103 403 132 0 44 chrY 21599346 21599414 -29914170 + MER1B DNA MER1_type 211 275 -64 274 203 0 31 chrY 21599562 21599626 -29913958 + MER1B DNA MER1_type 256 317 -16 506 222 0 0 chrY 21599645 21599744 -29913840 - AluJ/FLAM SINE Alu -211 101 3 21 0 0 0 chrY 21604611 21604632 -29908952 + AT_rich Low_complexity Low_complexity 1 21 0 1600 170 14 3 chrY 21604771 21605054 -29908530 - AluSx SINE Alu -26 286 1 1930 148 0 0 chrY 21605425 21605708 -29907876 + AluSq SINE Alu 1 283 -30 245 296 17 9 chrY 21606426 21606541 -29907043 + L2 LINE L2 2196 2311 -1003 195 152 0 0 chrY 21607830 21607876 -29905708 + T-rich Low_complexity Low_complexity 3 48 0 2671 10 48 0 chrY 21608202 21608496 -29905088 - AluYb8 SINE Alu -10 308 1 1518 188 28 0 chrY 21608818 21609100 -29904484 - AluSg SINE Alu -18 292 3 7706 51 7 5 chrY 21610530 21611546 -29902038 - L1PA4 LINE L1 -879 5267 4250 6823 48 16 0 chrY 21611546 21612415 -29901169 + L1PA4 LINE L1 5262 6144 -11 246 136 0 0 chrY 21612415 21612459 -29901125 + (TA)n Simple_repeat Simple_repeat 2 45 0 5072 135 16 8 chrY 21612460 21613297 -29900287 + L1MA2 LINE L1 5329 6171 -133 2014 67 75 0 chrY 21614086 21614354 -29899230 + AluY SINE Alu 1 288 -23 363 263 21 0 chrY 21614669 21614764 -29898820 + FLAM_C SINE Alu 13 109 -24 314 149 15 45 chrY 21614776 21614843 -29898741 - MER1B DNA MER1_type -13 316 252 1349 181 49 11 chrY 21614989 21615254 -29898330 - MER1B DNA MER1_type -64 275 1 245 140 237 32 chrY 21615254 21615347 -29898237 + L1MA7 LINE L1 6100 6211 -80 673 249 25 38 chrY 21615360 21615597 -29897987 + AluJb SINE Alu 1 234 -78 204 200 0 0 chrY 21616100 21616145 -29897439 + (TA)n Simple_repeat Simple_repeat 2 46 0 25 95 0 0 chrY 21616150 21616224 -29897360 + AT_rich Low_complexity Low_complexity 1 74 0 487 97 0 0 chrY 21618394 21618456 -29895128 + Alu SINE Alu 17 78 -232 24 0 0 0 chrY 21618674 21618698 -29894886 + AT_rich Low_complexity Low_complexity 1 24 0 1670 134 0 0 chrY 21619080 21619318 -29894266 - AluSc SINE Alu -45 264 27 962 247 34 51 chrY 21619497 21619793 -29893791 - AluJo SINE Alu -11 291 1 26 30 0 0 chrY 21621122 21621155 -29892429 + AT_rich Low_complexity Low_complexity 1 33 0 1153 269 206 12 chrY 21621301 21621971 -29891613 - L1MB4 LINE L1 -4 6176 5377 295 102 51 0 chrY 21621977 21622036 -29891548 + AluSp/q SINE Alu 242 303 0 1213 212 77 4 chrY 21622916 21623190 -29890394 - AluSg SINE Alu -12 298 5 1435 212 20 0 chrY 21623699 21623991 -29889593 + AluJo SINE Alu 3 300 -12 458 250 79 21 chrY 21624258 21624398 -29889186 - MLT1A1 LTR MaLR -2 363 216 1745 162 24 3 chrY 21624399 21624564 -29889020 - AluSc SINE Alu -6 303 128 1322 25 31 0 chrY 21624564 21624727 -29888857 - L1PA4 LINE L1 -2 6153 5986 1745 162 24 3 chrY 21624727 21624858 -29888726 - AluSc SINE Alu -181 128 1 261 322 116 20 chrY 21624860 21625006 -29888578 - MLT1A1 LTR MaLR -141 233 74 553 283 52 61 chrY 21625009 21625344 -29888240 - MER31-int LTR ERV1 -258 5823 4375 373 225 22 0 chrY 21625419 21625508 -29888076 - MER31-int LTR ERV1 -721 4215 4125 340 199 58 6 chrY 21625521 21625692 -29887892 + (TA)n Simple_repeat Simple_repeat 1 180 0 1107 198 4 68 chrY 21625720 21625968 -29887616 - AluJb SINE Alu -80 232 1 1350 244 44 40 chrY 21625968 21626423 -29887161 - MER31-int LTR ERV1 -805 4131 3675 1879 163 10 0 chrY 21626511 21626806 -29886778 - AluSx SINE Alu -14 298 1 2756 242 97 38 chrY 21626867 21627893 -29885691 - MER31-int LTR ERV1 -3570 1366 281 306 159 0 0 chrY 21627901 21627970 -29885614 + GA-rich Low_complexity Low_complexity 2 70 0 8123 172 3 7 chrY 21630059 21631442 -29882142 - HERVK22 LTR ERVK -5415 1422 46 3420 100 9 0 chrY 21631442 21632263 -29881321 - L1P2 LINE L1 -420 5734 4909 201 74 0 0 chrY 21633351 21633378 -29880206 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2908 137 62 6 chrY 21634796 21635263 -29878321 - MER1A DNA MER1_type -6 523 31 201 147 0 0 chrY 21636112 21636146 -29877438 + (TTG)n Simple_repeat Simple_repeat 2 35 0 8720 142 18 77 chrY 21636253 21638054 -29875530 + pTR5 LTR ERV1 743 2438 0 182 236 0 14 chrY 21638420 21638492 -29875092 + CT-rich Low_complexity Low_complexity 2 72 0 2160 115 0 7 chrY 21638657 21638962 -29874622 - AluY SINE Alu -8 303 1 186 71 0 0 chrY 21640657 21640685 -29872899 + (TA)n Simple_repeat Simple_repeat 1 28 0 1554 199 7 4 chrY 21640690 21640971 -29872613 - AluSx SINE Alu -25 287 6 2115 109 6 22 chrY 21641607 21641918 -29871666 + AluY SINE Alu 1 306 -5 22 0 0 0 chrY 21642199 21642221 -29871363 + AT_rich Low_complexity Low_complexity 1 22 0 219 69 0 0 chrY 21643297 21643326 -29870258 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 348 111 0 0 chrY 21644698 21644752 -29868832 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 22 35 0 0 chrY 21645208 21645237 -29868347 + AT_rich Low_complexity Low_complexity 1 29 0 258 32 0 0 chrY 21645413 21645444 -29868140 + (CA)n Simple_repeat Simple_repeat 2 32 0 344 190 70 50 chrY 21646056 21646156 -29867428 + L1MA9 LINE L1 6078 6179 -10 24 0 0 0 chrY 21646296 21646320 -29867264 + AT_rich Low_complexity Low_complexity 1 24 0 1730 161 24 0 chrY 21646998 21647290 -29866294 - AluSq SINE Alu -14 299 1 1785 153 4 0 chrY 21647701 21647982 -29865602 + AluSc SINE Alu 9 290 -19 21 0 0 0 chrY 21648002 21648023 -29865561 + AT_rich Low_complexity Low_complexity 1 21 0 326 270 59 62 chrY 21648171 21648491 -29865093 + L1MC4a LINE L1 5356 5681 -489 249 261 0 0 chrY 21648747 21648862 -29864722 + (TA)n Simple_repeat Simple_repeat 1 115 0 22 0 0 0 chrY 21648977 21648999 -29864585 + AT_rich Low_complexity Low_complexity 1 22 0 542 284 87 11 chrY 21649068 21649251 -29864333 - MIR SINE MIR -25 237 41 21 100 0 0 chrY 21649387 21649457 -29864127 + AT_rich Low_complexity Low_complexity 1 70 0 3447 122 35 7 chrY 21649553 21650117 -29863467 + LTR19B LTR ERV1 1 580 0 389 282 47 43 chrY 21650154 21650409 -29863175 + L1M4 LINE L1 2210 2465 -3681 899 281 109 59 chrY 21650501 21650942 -29862642 + MLT2B1 LTR ERVL 10 472 -48 192 152 0 0 chrY 21650944 21650977 -29862607 + (TG)n Simple_repeat Simple_repeat 2 34 0 373 329 90 43 chrY 21651471 21651758 -29861826 + L1MC4a LINE L1 5652 5951 -170 301 310 126 49 chrY 21653121 21653447 -29860137 + L2 LINE L2 2196 2546 -768 282 294 43 43 chrY 21655057 21655312 -29858272 + L1ME LINE L1 5257 5511 -653 26 50 0 0 chrY 21655587 21655627 -29857957 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chrY 21657359 21657391 -29856193 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chrY 21657544 21657588 -29855996 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chrY 21657728 21657757 -29855827 + AT_rich Low_complexity Low_complexity 1 29 0 1962 156 50 33 chrY 21657905 21658327 -29855257 + L1PA16 LINE L1 5357 5785 -381 26784 35 15 2 chrY 21658328 21664337 -29849247 + L1PA2 LINE L1 1 5934 -221 640 56 9 28 chrY 21664337 21664444 -29849140 + (TAAAA)n Simple_repeat Simple_repeat 1 105 0 2031 199 18 0 chrY 21664444 21664831 -29848753 + L1PA16 LINE L1 5771 6164 -2 26784 35 15 2 chrY 21664831 21664857 -29848727 + L1PA2 LINE L1 5933 6151 -4 23 92 0 0 chrY 21665792 21665857 -29847727 + AT_rich Low_complexity Low_complexity 1 65 0 618 219 0 0 chrY 21666945 21667059 -29846525 + MER41E LTR ERV1 6 119 -393 3130 142 52 73 chrY 21667437 21668133 -29845451 - LTR1 LTR ERV1 -104 681 1 266 275 88 0 chrY 21668304 21668384 -29845200 - LTR33A LTR ERVL -335 188 102 894 234 124 53 chrY 21669308 21669590 -29843994 - AluJo SINE Alu 0 312 11 2443 70 0 10 chrY 21669916 21670218 -29843366 - AluY SINE Alu -12 299 1 245 243 101 94 chrY 21673644 21673911 -29839673 + MLT1F LTR MaLR 151 419 -171 * 368 240 64 24 chrY 21673904 21674029 -29839555 + MLT1F LTR MaLR 386 515 -27 1463 213 3 0 chrY 21674495 21674800 -29838784 + AluSx SINE Alu 1 306 -6 1449 205 0 27 chrY 21674848 21675141 -29838443 + AluSx SINE Alu 5 289 -23 572 111 10 0 chrY 21675160 21675259 -29838325 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 489 282 113 7 chrY 21675877 21676019 -29837565 - FRAM SINE Alu -8 158 2 305 317 10 10 chrY 21676136 21676237 -29837347 + MLT1E LTR MaLR 361 461 -132 237 83 0 0 chrY 21676252 21676288 -29837296 + (TG)n Simple_repeat Simple_repeat 2 37 0 253 214 18 0 chrY 21676296 21676352 -29837232 + L1MC/D LINE L1 5753 5809 -1999 943 330 31 35 chrY 21677069 21677393 -29836191 - L1M3b LINE L1 -5771 510 187 2476 82 0 0 chrY 21677393 21677699 -29835885 + AluY SINE Alu 1 306 -5 943 330 31 35 chrY 21677699 21677829 -29835755 - L1M3b LINE L1 -6094 187 58 1542 184 3 33 chrY 21677923 21678222 -29835362 + AluSg SINE Alu 1 290 -20 232 312 18 37 chrY 21678310 21678419 -29835165 - L1M3de LINE L1 -5898 755 649 1719 198 48 55 chrY 21678426 21678861 -29834723 - MSTB1 LTR MaLR 0 432 1 2059 138 7 3 chrY 21679178 21679482 -29834102 + AluSx SINE Alu 1 305 -7 408 331 67 33 chrY 21679512 21679757 -29833827 - L1M3de LINE L1 -5217 1436 605 242 323 16 16 chrY 21679871 21679995 -29833589 - L1M3d LINE L1 -5758 133 10 23 33 0 0 chrY 21680004 21680034 -29833550 + AT_rich Low_complexity Low_complexity 1 30 0 255 248 56 0 chrY 21680034 21680115 -29833469 - L1MA4 LINE L1 -11 6289 6208 424 210 30 0 chrY 21680138 21680238 -29833346 + L1MA4 LINE L1 6039 6141 -159 1392 208 4 8 chrY 21680249 21680513 -29833071 - AluSx SINE Alu -47 265 3 1361 206 28 3 chrY 21680982 21681264 -29832320 + AluSg SINE Alu 1 289 -21 717 218 114 36 chrY 21683191 21683502 -29830082 + L1M4 LINE L1 5258 5600 -584 4919 57 0 2 chrY 21683629 21684209 -29829375 + L1PA4 LINE L1 5570 6148 -7 29 0 0 0 chrY 21684209 21684238 -29829346 + AT_rich Low_complexity Low_complexity 1 29 0 1749 243 164 20 chrY 21684243 21685046 -29828538 + L1MB4 LINE L1 5254 6180 0 27 0 0 0 chrY 21686402 21686429 -29827155 + AT_rich Low_complexity Low_complexity 1 27 0 947 248 47 50 chrY 21686537 21686835 -29826749 + AluJo SINE Alu 1 297 -5 25 31 0 0 chrY 21687934 21687966 -29825618 + AT_rich Low_complexity Low_complexity 1 32 0 1641 181 14 4 chrY 21688251 21688564 -29825020 - AluSg SINE Alu 0 316 1 1953 143 3 0 chrY 21690561 21690862 -29822722 + AluSc SINE Alu 5 306 -3 201 254 51 17 chrY 21691217 21691276 -29822308 + L3 LINE CR1 110 170 -1407 2001 137 7 3 chrY 21691331 21691638 -29821946 - AluSc SINE Alu -1 308 1 249 172 289 39 chrY 21693431 21693458 -29820126 - L1MA7 LINE L1 -29 6262 6243 919 242 110 7 chrY 21693458 21693612 -29819972 - AluJb SINE Alu 0 302 165 303 28 0 0 chrY 21693612 21693648 -29819936 + (TG)n Simple_repeat Simple_repeat 1 36 0 919 242 110 7 chrY 21693648 21693766 -29819818 - AluJb SINE Alu -137 165 2 249 172 289 39 chrY 21693766 21693866 -29819718 - L1MA7 LINE L1 -48 6243 6103 379 147 0 44 chrY 21693956 21694024 -29819560 + MER1B DNA MER1_type 211 275 -64 280 188 0 31 chrY 21694172 21694236 -29819348 + MER1B DNA MER1_type 256 317 -16 590 224 9 0 chrY 21694247 21694354 -29819230 - FLAM_C SINE Alu -33 110 3 314 289 103 98 chrY 21695814 21696212 -29817372 - L1M2 LINE L1 -5477 1372 973 1642 186 3 0 chrY 21699455 21699740 -29813844 - AluSx SINE Alu -26 286 1 1901 152 0 0 chrY 21700037 21700320 -29813264 + AluSq SINE Alu 1 283 -30 317 321 125 29 chrY 21701031 21701311 -29812273 + L2 LINE L2 2196 2502 -812 1006 202 5 0 chrY 21701937 21702140 -29811444 - L1PA16 LINE L1 -179 5987 5784 22 0 0 0 chrY 21702763 21702785 -29810799 + AT_rich Low_complexity Low_complexity 1 22 0 453 225 0 0 chrY 21702787 21702907 -29810677 + CT-rich Low_complexity Low_complexity 1 120 0 629 107 33 8 chrY 21702934 21703056 -29810528 + CT-rich Low_complexity Low_complexity 2 126 0 1239 237 3 3 chrY 21703081 21703238 -29810346 - AluSx SINE Alu -21 291 132 270 0 0 0 chrY 21703238 21703268 -29810316 + (TA)n Simple_repeat Simple_repeat 2 31 0 1239 237 3 3 chrY 21703268 21703397 -29810187 - AluSx SINE Alu -179 133 5 1429 224 31 3 chrY 21703446 21703740 -29809844 - AluSx SINE Alu 0 302 1 366 238 90 25 chrY 21704281 21704403 -29809181 - MLT1F LTR MaLR -27 515 386 2192 118 3 22 chrY 21704519 21704834 -29808750 - AluY SINE Alu -2 309 1 228 263 67 103 chrY 21704852 21705046 -29808538 - MLT1F LTR MaLR -303 287 101 592 233 15 94 chrY 21711462 21711664 -29801920 - AluJo SINE Alu -115 197 12 230 254 70 97 chrY 21712099 21712213 -29801371 + LTR33A LTR ERVL 131 241 -282 2867 134 48 115 chrY 21712327 21713057 -29800527 + LTR1 LTR ERV1 1 681 -104 653 219 0 0 chrY 21713445 21713564 -29800020 - MER41E LTR ERV1 -393 119 1 238 24 0 49 chrY 21714467 21714508 -29799076 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5595 5 0 0 chrY 21714511 21715131 -29798453 - L1PA2 LINE L1 -4 6151 5532 3089 39 0 3 chrY 21715131 21715513 -29798071 + L1P LINE L1 4689 5069 -1077 3608 160 56 35 chrY 21716723 21717263 -29796321 - L1PA16 LINE L1 -2 6164 5601 2525 46 0 7 chrY 21717263 21717566 -29796018 - AluY SINE Alu -10 301 1 3608 160 56 35 chrY 21717566 21717817 -29795767 - L1PA16 LINE L1 -565 5601 5357 21 0 0 0 chrY 21718008 21718029 -29795555 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chrY 21718327 21718360 -29795224 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chrY 21719973 21720002 -29793582 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrY 21720094 21720122 -29793462 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chrY 21720255 21720286 -29793298 + AT_rich Low_complexity Low_complexity 1 31 0 257 308 61 11 chrY 21720403 21720579 -29793005 - L1M3 LINE L1 -657 5517 5336 198 324 27 27 chrY 21721013 21721087 -29792497 + MER5A DNA MER1_type 43 116 -73 310 325 125 29 chrY 21722324 21722604 -29790980 - L2 LINE L2 -812 2502 2196 326 304 0 6 chrY 21724694 21724865 -29788719 + (TA)n Simple_repeat Simple_repeat 2 171 0 876 279 124 54 chrY 21724865 21725310 -29788274 - MLT2B1 LTR ERVL -40 480 5 430 272 49 33 chrY 21725376 21725619 -29787965 - L1M4 LINE L1 -3681 2465 2219 3501 117 37 5 chrY 21725664 21726226 -29787358 - LTR19B LTR ERV1 0 580 1 497 310 7 17 chrY 21726470 21726646 -29786938 + MIR SINE MIR 61 237 -25 255 140 0 0 chrY 21726862 21726912 -29786672 + (TA)n Simple_repeat Simple_repeat 2 51 0 336 317 114 44 chrY 21727169 21727447 -29786137 - L1ME LINE L1 -487 5683 5369 1901 103 0 74 chrY 21727447 21727759 -29785825 - AluY SINE Alu -22 289 1 336 317 114 44 chrY 21727759 21727818 -29785766 - L1ME LINE L1 -801 5369 5316 29 83 0 10 chrY 21727943 21728010 -29785574 + AT_rich Low_complexity Low_complexity 1 68 -27 1868 127 3 18 chrY 21728010 21728293 -29785291 - AluSc SINE Alu -22 287 9 29 83 0 10 chrY 21728293 21728321 -29785263 + AT_rich Low_complexity Low_complexity 68 95 0 2891 9 0 6 chrY 21728908 21729228 -29784356 + AluYb8 SINE Alu 1 318 0 22 35 0 0 chrY 21729512 21729541 -29784043 + AT_rich Low_complexity Low_complexity 1 29 0 660 132 0 0 chrY 21730056 21730162 -29783422 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 299 64 0 21 chrY 21731521 21731568 -29782016 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 1188 63 17 6 chrY 21732939 21733114 -29780470 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1987 130 14 7 chrY 21733128 21733421 -29780163 - AluY SINE Alu -16 295 1 1556 208 13 0 chrY 21734049 21734330 -29779254 + AluSx SINE Alu 2 289 -23 608 0 14 0 chrY 21734330 21734402 -29779182 + (TA)n Simple_repeat Simple_repeat 1 73 0 1556 208 13 0 chrY 21734402 21734418 -29779166 + AluSx SINE Alu 289 303 -9 28 61 0 0 chrY 21734785 21734834 -29778750 + AT_rich Low_complexity Low_complexity 1 49 0 602 174 0 7 chrY 21736224 21736373 -29777211 + GA-rich Low_complexity Low_complexity 1 148 0 252 100 0 0 chrY 21736839 21736879 -29776705 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2748 168 60 8 chrY 21737734 21738217 -29775367 + MER1A DNA MER1_type 22 529 0 21 0 0 0 chrY 21738620 21738641 -29774943 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrY 21739629 21739658 -29773926 + AT_rich Low_complexity Low_complexity 1 29 0 688 148 0 0 chrY 21740741 21740856 -29772728 + L1P LINE L1 4909 5023 -1123 4526 112 137 8 chrY 21740857 21741589 -29771995 + LTR12 LTR ERV1 1 826 0 19608 124 17 6 chrY 21741589 21746465 -29767119 + HERV9 LTR ERV1 1 4974 -3425 1839 145 42 46 chrY 21746459 21747175 -29766409 + HERV9 LTR ERV1 761 1740 -5156 * 1273 117 0 42 chrY 21747172 21747385 -29766199 + HERV9 LTR ERV1 7625 7828 -571 * 952 132 26 0 chrY 21747385 21747537 -29766047 + HERV9 LTR ERV1 3895 4050 -4349 616 108 0 0 chrY 21747533 21747616 -29765968 + LTR12 LTR ERV1 632 714 0 * 3414 99 2 0 chrY 21747616 21748326 -29765258 + L1P2 LINE L1 5021 5732 -422 40584 163 12 9 chrY 21748328 21755102 -29758482 + HERVK22 LTR ERVK 46 6837 0 2899 185 32 0 chrY 21755103 21755665 -29757919 + LTR22 LTR ERVK 1 580 0 415 232 11 0 chrY 21756355 21756450 -29757134 + MLT1D LTR MaLR 343 438 -67 398 331 112 45 chrY 21756512 21757002 -29756582 - L2 LINE L2 -354 2960 2438 190 70 0 47 chrY 21757103 21757146 -29756438 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 26 50 0 0 chrY 21758116 21758156 -29755428 + AT_rich Low_complexity Low_complexity 1 40 0 1760 142 15 61 chrY 21758328 21758658 -29754926 - MER52C LTR ERV1 0 1278 964 877 106 16 0 chrY 21759603 21759726 -29753858 - Alu SINE Alu -19 291 167 2387 67 0 13 chrY 21759913 21760226 -29753358 + AluYb8 SINE Alu 6 314 -4 797 215 32 0 chrY 21760227 21760385 -29753199 + AluSg/x SINE Alu 132 294 -16 6928 140 29 1 chrY 21760385 21761553 -29752031 + L1PA7 LINE L1 3597 4797 -1349 476 116 0 76 chrY 21761553 21762110 -29751474 + (TA)n Simple_repeat Simple_repeat 1 514 0 607 76 0 121 chrY 21762123 21763216 -29750368 + (TA)n Simple_repeat Simple_repeat 1 960 0 213 168 0 78 chrY 21763233 21763412 -29750172 + (TA)n Simple_repeat Simple_repeat 1 165 0 183 189 6 61 chrY 21763485 21763665 -29749919 + (TA)n Simple_repeat Simple_repeat 2 171 0 541 70 42 48 chrY 21763711 21764069 -29749515 + (TA)n Simple_repeat Simple_repeat 1 355 0 5952 101 10 6 chrY 21764096 21765444 -29748140 + L1PA7 LINE L1 4794 6146 -8 26 93 0 0 chrY 21765934 21766009 -29747575 + AT_rich Low_complexity Low_complexity 1 75 0 294 261 42 0 chrY 21766051 21766170 -29747414 + L1M4 LINE L1 4481 4604 -1542 2311 80 3 0 chrY 21766567 21766869 -29746715 - AluY SINE Alu -7 304 2 25 51 0 0 chrY 21767567 21767606 -29745978 + AT_rich Low_complexity Low_complexity 1 39 0 1622 143 83 4 chrY 21767962 21768227 -29745357 - AluSg SINE Alu -24 286 1 21 36 0 0 chrY 21768524 21768552 -29745032 + AT_rich Low_complexity Low_complexity 1 28 0 2162 99 0 16 chrY 21768701 21769015 -29744569 - AluY SINE Alu -2 309 1 342 288 110 0 chrY 21769051 21769197 -29744387 - LTR67 LTR ERVL -8 549 388 780 330 60 22 chrY 21770293 21770663 -29742921 + MLT1J LTR MaLR 19 402 -109 39 92 0 0 chrY 21770998 21771107 -29742477 + AT_rich Low_complexity Low_complexity 1 109 0 2365 105 14 0 chrY 21771376 21771727 -29741857 + THE1-int LTR MaLR 1 356 -1224 1512 174 15 0 chrY 21771734 21772004 -29741580 + LTR19B LTR ERV1 307 580 0 2430 197 8 20 chrY 21772005 21772905 -29740679 + HERVFH19I LTR ERV1 2 920 -4666 * 4797 161 13 18 chrY 21772892 21773729 -29739855 + HERVFH19I LTR ERV1 1129 1961 -3625 19978 46 2 3 chrY 21773759 21777032 -29736552 + L1PA3 LINE L1 2875 6152 -3 1344 311 72 5 chrY 21777324 21777951 -29735633 + LTR65 LTR ERV1 1 669 0 1050 204 133 11 chrY 21778178 21778442 -29735142 + AluSg SINE Alu 3 298 -2 446 310 138 38 chrY 21778785 21779185 -29734399 + L1MEc LINE L1 39 478 -5918 1618 283 73 55 chrY 21779198 21780354 -29733230 - L1M2b LINE L1 -5277 1932 1 1630 144 70 3 chrY 21780384 21780669 -29732915 - AluSx SINE Alu -8 304 1 22 35 0 0 chrY 21780669 21780698 -29732886 + AT_rich Low_complexity Low_complexity 1 29 0 2248 301 47 51 chrY 21780709 21781842 -29731742 - L1M3de LINE L1 -4602 2051 924 227 302 0 19 chrY 21782129 21782182 -29731402 - L1M3de LINE L1 -6325 328 277 231 294 73 0 chrY 21782204 21782272 -29731312 - L1M3de LINE L1 -5638 1015 943 207 0 0 0 chrY 21782772 21782795 -29730789 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 297 253 21 32 chrY 21783621 21783716 -29729868 + LTR65-int LTR ERV1 197 290 -4646 717 167 11 22 chrY 21784891 21785071 -29728513 + (TCTCTG)n Simple_repeat Simple_repeat 3 180 0 1979 251 68 33 chrY 21785112 21786130 -29727454 + LTR65-int LTR ERV1 287 1366 -3570 1813 182 0 0 chrY 21786191 21786488 -29727096 + AluSx SINE Alu 1 297 -15 1429 239 40 40 chrY 21786593 21787049 -29726535 + MER31-int LTR ERV1 3676 4131 -805 633 167 79 0 chrY 21787049 21787163 -29726421 + AluJb SINE Alu 1 123 -189 242 182 36 0 chrY 21787297 21787352 -29726232 + L1MB5 LINE L1 6103 6159 -15 25 65 0 0 chrY 21787872 21787918 -29725666 + AT_rich Low_complexity Low_complexity 1 46 0 911 270 27 40 chrY 21788904 21789200 -29724384 + AluJo SINE Alu 1 292 -10 1563 150 16 4 chrY 21789367 21789614 -29723970 + AluSc SINE Alu 15 264 -45 2135 67 0 25 chrY 21790348 21790653 -29722931 - AluY SINE Alu 0 305 8 211 182 114 0 chrY 21792773 21792817 -29720767 - L2 LINE L2 -12 3260 3212 370 190 20 50 chrY 21794373 21794473 -29719111 + (TA)n Simple_repeat Simple_repeat 2 98 0 348 127 0 0 chrY 21794473 21794528 -29719056 + (TG)n Simple_repeat Simple_repeat 2 56 0 448 196 64 69 chrY 21795041 21795214 -29718370 - AluJb SINE Alu -78 234 63 1009 270 46 0 chrY 21795258 21795562 -29718022 + MER31-int LTR ERV1 3814 4131 -805 1083 198 4 68 chrY 21795562 21795810 -29717774 + AluJb SINE Alu 1 232 -80 340 199 58 6 chrY 21795838 21796009 -29717575 + (TA)n Simple_repeat Simple_repeat 1 180 0 377 225 22 0 chrY 21796022 21796111 -29717473 + MER31-int LTR ERV1 4125 4215 -721 568 283 52 61 chrY 21796186 21796521 -29717063 + MER31-int LTR ERV1 4375 4678 -258 261 324 115 20 chrY 21796524 21796672 -29716912 + MLT1A1 LTR MaLR 74 235 -139 1721 162 24 3 chrY 21796672 21796803 -29716781 + AluSc SINE Alu 1 128 -181 1316 25 31 0 chrY 21796803 21796966 -29716618 + L1PA4 LINE L1 5986 6153 -2 1721 162 24 3 chrY 21796966 21797131 -29716453 + AluSc SINE Alu 128 303 -6 455 250 79 21 chrY 21797132 21797272 -29716312 + MLT1A1 LTR MaLR 216 363 -2 1413 212 20 0 chrY 21797539 21797831 -29715753 - AluJo SINE Alu -12 300 3 1229 212 84 0 chrY 21798340 21798614 -29714970 + AluSq SINE Alu 5 301 -2 295 102 51 0 chrY 21799494 21799553 -29714031 - AluSp/q SINE Alu 0 303 242 1188 269 206 12 chrY 21799559 21800229 -29713355 + L1MB4 LINE L1 5377 6176 -4 26 30 0 0 chrY 21800375 21800408 -29713176 + AT_rich Low_complexity Low_complexity 1 33 0 937 247 34 51 chrY 21801737 21802033 -29711551 + AluJo SINE Alu 1 291 -11 1644 134 0 0 chrY 21802212 21802450 -29711134 + AluSc SINE Alu 27 264 -45 24 0 0 0 chrY 21802832 21802856 -29710728 + AT_rich Low_complexity Low_complexity 1 24 0 479 97 0 0 chrY 21803074 21803136 -29710448 - Alu SINE Alu -232 78 17 25 95 0 0 chrY 21805306 21805380 -29708204 + AT_rich Low_complexity Low_complexity 1 74 0 204 200 0 0 chrY 21805385 21805430 -29708154 + (TA)n Simple_repeat Simple_repeat 1 45 0 648 249 25 38 chrY 21805933 21806170 -29707414 - AluJb SINE Alu -78 234 1 255 140 237 32 chrY 21806183 21806276 -29707308 - L1MA7 LINE L1 -80 6211 6100 1320 181 49 11 chrY 21806276 21806541 -29707043 + MER1B DNA MER1_type 1 275 -64 306 149 15 45 chrY 21806687 21806754 -29706830 + MER1B DNA MER1_type 252 316 -13 350 290 20 0 chrY 21806766 21806866 -29706718 - FLAM_C SINE Alu -24 109 8 1972 67 75 0 chrY 21807176 21807444 -29706140 - AluY SINE Alu -23 288 1 5096 135 16 8 chrY 21808233 21809070 -29704514 - L1MA2 LINE L1 -133 6171 5329 246 136 0 0 chrY 21809071 21809115 -29704469 + (TA)n Simple_repeat Simple_repeat 2 45 0 6833 48 16 0 chrY 21809115 21809984 -29703600 - L1PA4 LINE L1 -11 6144 5262 7709 50 7 5 chrY 21809984 21810985 -29702599 + L1PA4 LINE L1 4250 5252 -894 1475 188 28 0 chrY 21812430 21812712 -29700872 + AluSg SINE Alu 3 292 -18 2671 10 48 0 chrY 21813034 21813328 -29700256 + AluYb8 SINE Alu 1 308 -10 195 152 0 0 chrY 21813654 21813700 -29699884 + A-rich Low_complexity Low_complexity 3 48 0 245 296 17 9 chrY 21814989 21815104 -29698480 - L2 LINE L2 -1003 2311 2196 1930 148 0 0 chrY 21815822 21816105 -29697479 - AluSq SINE Alu -30 283 1 1600 170 14 3 chrY 21816476 21816759 -29696825 + AluSx SINE Alu 1 286 -26 21 0 0 0 chrY 21816898 21816919 -29696665 + AT_rich Low_complexity Low_complexity 1 21 0 506 222 0 0 chrY 21821787 21821886 -29691698 + AluJ/FLAM SINE Alu 3 101 -211 274 203 0 31 chrY 21821905 21821969 -29691615 - MER1B DNA MER1_type -16 317 256 403 132 0 44 chrY 21822117 21822185 -29691399 - MER1B DNA MER1_type -64 275 211 253 168 226 66 chrY 21822275 21822376 -29691208 + L1MA7 LINE L1 6103 6233 -58 928 224 76 22 chrY 21822376 21822653 -29690931 + AluJb SINE Alu 2 293 -9 253 168 226 66 chrY 21822653 21822688 -29690896 + L1MA7 LINE L1 6233 6261 -30 342 0 0 0 chrY 21823129 21823167 -29690417 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 82 0 0 chrY 21823196 21823245 -29690339 + AT_rich Low_complexity Low_complexity 1 49 0 1848 145 3 22 chrY 21824531 21824842 -29688742 + AluSc SINE Alu 2 306 -3 1891 136 7 3 chrY 21825320 21825622 -29687962 - AluSc SINE Alu -6 303 1 1659 176 0 10 chrY 21827639 21827940 -29685644 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 21828489 21828517 -29685067 + AT_rich Low_complexity Low_complexity 1 28 0 825 257 25 30 chrY 21829420 21829657 -29683927 - AluJo SINE Alu -75 237 2 1212 260 48 6 chrY 21831120 21831451 -29682133 - L1MB5 LINE L1 -13 6161 5817 917 217 48 33 chrY 21831507 21831779 -29681805 - L1MB5 LINE L1 -490 5690 5415 298 143 0 0 chrY 21831793 21831842 -29681742 + L1PA6 LINE L1 6106 6154 0 306 210 196 7 chrY 21831843 21831986 -29681598 - L1MB5 LINE L1 -761 5423 5254 606 203 86 102 chrY 21832146 21832344 -29681240 - L1M4 LINE L1 -577 5601 5399 314 102 0 0 chrY 21832344 21832393 -29681191 + L1PA6 LINE L1 6106 6154 0 606 203 86 102 chrY 21832393 21832537 -29681047 - L1M4 LINE L1 -779 5399 5254 721 191 119 90 chrY 21832697 21832891 -29680693 - L1M4 LINE L1 -577 5601 5391 309 104 0 0 chrY 21832891 21832939 -29680645 + L1PA6 LINE L1 6106 6153 -1 721 191 119 90 chrY 21832939 21833079 -29680505 - L1M4 LINE L1 -787 5391 5257 525 218 23 45 chrY 21833227 21833423 -29680161 - L1ME LINE L1 -553 5617 5415 283 143 0 0 chrY 21833437 21833486 -29680098 + L1PA6 LINE L1 6106 6154 0 313 219 61 26 chrY 21833487 21833601 -29679983 - L1ME LINE L1 -755 5423 5306 550 222 79 56 chrY 21833786 21834116 -29679468 - L1M4 LINE L1 -577 5601 5254 1262 204 33 11 chrY 21836030 21836304 -29677280 - AluSg SINE Alu -22 288 9 1438 197 3 14 chrY 21836778 21837062 -29676522 + AluSx SINE Alu 7 287 -25 1269 229 7 45 chrY 21837128 21837438 -29676146 - AluJo SINE Alu -3 299 2 515 273 35 0 chrY 21837485 21837657 -29675927 - L1MA4 LINE L1 -124 6176 5999 275 154 17 0 chrY 21837659 21837720 -29675864 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 21837732 21837780 -29675804 + CT-rich Low_complexity Low_complexity 3 50 0 1428 212 3 7 chrY 21837809 21838102 -29675482 - AluSx SINE Alu -16 296 5 914 214 0 0 chrY 21838142 21838329 -29675255 - AluSg/x SINE Alu -1 311 125 325 264 66 90 chrY 21838828 21839272 -29674312 - MLT1G LTR MaLR -28 514 102 210 192 0 0 chrY 21839780 21839832 -29673752 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 35 0 0 chrY 21840317 21840346 -29673238 + AT_rich Low_complexity Low_complexity 1 29 0 608 246 144 54 chrY 21842016 21842293 -29671291 + AluJo SINE Alu 11 312 0 277 282 89 24 chrY 21843171 21843295 -29670289 + LTR33A LTR ERVL 55 186 -337 2460 177 45 118 chrY 21843467 21844202 -29669382 + LTR1 LTR ERV1 1 681 -104 189 0 0 0 chrY 21844828 21844849 -29668735 + (T)n Simple_repeat Simple_repeat 1 21 0 269 311 55 43 chrY 21846075 21846329 -29667255 + SST1 Satellite centromeric 344 600 -963 270 333 67 71 chrY 21846770 21847191 -29666393 + SST1 Satellite centromeric 1134 1552 -11 222 37 0 0 chrY 21847278 21847305 -29666279 + (T)n Simple_repeat Simple_repeat 1 27 0 201 196 20 0 chrY 21847747 21847798 -29665786 + A-rich Low_complexity Low_complexity 1 52 0 231 36 0 0 chrY 21849283 21849311 -29664273 + (A)n Simple_repeat Simple_repeat 1 28 0 375 319 52 42 chrY 21849813 21850270 -29663314 + SST1 Satellite centromeric 138 599 -964 235 325 0 0 chrY 21850764 21850841 -29662743 + SST1 Satellite centromeric 1163 1239 -324 214 41 20 82 chrY 21851184 21851233 -29662351 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 200 0 0 chrY 21853645 21853705 -29659879 + (TG)n Simple_repeat Simple_repeat 1 60 0 279 0 0 0 chrY 21853920 21853951 -29659633 + (A)n Simple_repeat Simple_repeat 1 31 0 191 164 16 0 chrY 21854706 21854767 -29658817 + (TG)n Simple_repeat Simple_repeat 1 62 0 180 0 0 0 chrY 21854974 21854994 -29658590 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 311 315 61 48 chrY 21855476 21855933 -29657651 + SST1 Satellite centromeric 138 600 -963 302 279 109 24 chrY 21856657 21856822 -29656762 + SST1 Satellite centromeric 1374 1552 -11 521 283 64 70 chrY 21857908 21858421 -29655163 + SST1 Satellite centromeric 118 627 -936 396 40 0 0 chrY 21859323 21859373 -29654211 + (TG)n Simple_repeat Simple_repeat 1 50 0 462 315 86 59 chrY 21860304 21860863 -29652721 + SST1 Satellite centromeric 29 602 -961 263 310 62 21 chrY 21864001 21864146 -29649438 + SST1 Satellite centromeric 1388 1538 -25 202 130 19 19 chrY 21864189 21864243 -29649341 + (TG)n Simple_repeat Simple_repeat 1 54 0 261 298 93 12 chrY 21866474 21866635 -29646949 + SST1 Satellite centromeric 1386 1559 -4 249 33 0 0 chrY 21866760 21866790 -29646794 + (T)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chrY 21869221 21869243 -29644341 + (T)n Simple_repeat Simple_repeat 1 22 0 357 285 55 51 chrY 21870431 21870687 -29642897 + SST1 Satellite centromeric 344 600 -963 943 269 35 28 chrY 21971516 21971806 -29541778 - AluJo SINE Alu -10 292 1 1041 285 32 6 chrY 21973283 21973599 -29539985 - L1MB5 LINE L1 -13 6161 5838 1230 205 111 18 chrY 21973671 21974066 -29539518 - L1MB5 LINE L1 -495 5685 5254 1219 227 33 4 chrY 21976019 21976319 -29537265 - AluSg SINE Alu 0 308 1 1416 206 11 14 chrY 21976806 21977088 -29536496 + AluSx SINE Alu 7 287 -25 1217 228 0 44 chrY 21977146 21977466 -29536118 - AluJo SINE Alu -5 307 2 515 273 35 0 chrY 21977513 21977685 -29535899 - L1MA4 LINE L1 -124 6176 5999 252 190 11 0 chrY 21977687 21977752 -29535832 + L1MA4 LINE L1 6223 6289 -11 22 35 0 0 chrY 21977752 21977781 -29535803 + AT_rich Low_complexity Low_complexity 1 29 0 401 333 25 42 chrY 21978029 21978313 -29535271 + L1M3de LINE L1 371 658 -5995 1697 124 120 11 chrY 21978313 21978579 -29535005 - AluSg SINE Alu -15 295 1 401 333 25 42 chrY 21978579 21978636 -29534948 + L1M3de LINE L1 658 1436 -5217 1629 206 37 46 chrY 21978917 21979349 -29534235 + MSTB1 LTR MaLR 4 431 -1 1660 176 0 43 chrY 21979561 21979884 -29533700 - AluSc SINE Alu 0 309 1 680 338 54 37 chrY 21979958 21980419 -29533165 + L1M3b LINE L1 42 510 -5771 269 214 8 120 chrY 21981255 21981372 -29532212 + L1P LINE L1 3463 3566 -2580 231 224 20 0 chrY 21981371 21981420 -29532164 - L1MC/D LINE L1 -1999 5809 5760 * 254 325 8 26 chrY 21981458 21981575 -29532009 - MLT1E LTR MaLR -118 475 361 467 271 106 7 chrY 21981693 21981844 -29531740 + FRAM SINE Alu 1 166 0 529 187 15 8 chrY 21982452 21982586 -29530998 + CT-rich Low_complexity Low_complexity 2 136 0 1278 230 0 30 chrY 21982618 21982914 -29530670 - AluSx SINE Alu -21 291 5 195 69 0 0 chrY 21982958 21982987 -29530597 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1340 208 33 0 chrY 21982993 21983267 -29530317 - AluSx SINE Alu -29 283 1 339 265 49 84 chrY 21983722 21984183 -29529401 - MLT1F LTR MaLR -27 515 85 845 58 0 0 chrY 21989153 21989256 -29524328 - L1P3 LINE L1 -622 5532 5430 2213 90 3 16 chrY 21989256 21989576 -29524008 + L1PA6 LINE L1 5837 6154 0 21 82 0 0 chrY 22091481 22091530 -29422054 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chrY 22091566 22091595 -29421989 + AT_rich Low_complexity Low_complexity 1 29 0 800 228 141 47 chrY 22093304 22093559 -29420025 + AluJo SINE Alu 11 289 -23 187 200 67 0 chrY 22094095 22094140 -29419444 + L2 LINE L2 3262 3309 -4 226 274 104 67 chrY 22094510 22094645 -29418939 + LTR33A LTR ERVL 102 241 -282 2777 136 46 117 chrY 22094764 22095497 -29418087 + LTR1 LTR ERV1 1 681 -104 687 162 17 0 chrY 22095879 22095996 -29417588 - MER41E LTR ERV1 -393 119 1 3827 174 42 23 chrY 22098099 22098893 -29414691 - L1PA16 LINE L1 -1 6165 5357 35 24 0 0 chrY 22099406 22099448 -29414136 + AT_rich Low_complexity Low_complexity 1 42 0 2259 109 0 3 chrY 22100445 22100749 -29412835 + AluSc SINE Alu 1 303 -6 22 35 0 0 chrY 22101408 22101437 -29412147 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrY 22101701 22101723 -29411861 + AT_rich Low_complexity Low_complexity 1 22 0 313 314 38 34 chrY 22101843 22102079 -29411505 - L1M2 LINE L1 -653 5511 5281 192 314 29 29 chrY 22102448 22102518 -29411066 + MER5A DNA MER1_type 43 112 -77 225 65 0 0 chrY 22102616 22102647 -29410937 + (CAA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chrY 22103914 22103937 -29409647 + AT_rich Low_complexity Low_complexity 1 23 0 827 111 8 0 chrY 22103948 22104065 -29409519 - AluSc SINE Alu -191 118 1 1702 150 29 0 chrY 22104451 22104731 -29408853 + AluSq SINE Alu 1 288 -25 27 0 0 0 chrY 22105393 22105420 -29408164 + AT_rich Low_complexity Low_complexity 1 27 0 367 200 0 22 chrY 22105581 22105671 -29407913 - L1MA9 LINE L1 -147 6165 6078 1145 66 11 27 chrY 22106989 22107172 -29406412 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chrY 22108584 22108608 -29404976 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1962 124 17 7 chrY 22109987 22110286 -29403298 - AluY SINE Alu 0 311 10 22 35 0 0 chrY 22110673 22110702 -29402882 + AT_rich Low_complexity Low_complexity 1 29 0 1524 197 11 3 chrY 22110928 22111212 -29402372 + AluSx SINE Alu 2 287 -25 23 0 0 0 chrY 22111212 22111235 -29402349 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrY 22111320 22111349 -29402235 + AT_rich Low_complexity Low_complexity 1 29 0 52 64 0 0 chrY 22111588 22111682 -29401902 + AT_rich Low_complexity Low_complexity 1 94 0 423 0 0 0 chrY 22111693 22111740 -29401844 + (TG)n Simple_repeat Simple_repeat 2 48 0 207 364 8 8 chrY 22112600 22112721 -29400863 + (CAA)n Simple_repeat Simple_repeat 2 122 0 381 218 0 0 chrY 22113135 22113259 -29400325 + GA-rich Low_complexity Low_complexity 1 124 0 201 147 0 0 chrY 22113725 22113759 -29399825 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2028 51 0 0 chrY 22114194 22114450 -29399134 - L1PA4 LINE L1 -1 6154 5899 2803 148 62 6 chrY 22114873 22115340 -29398244 + MER1A DNA MER1_type 31 523 -6 195 42 0 0 chrY 22116765 22116789 -29396795 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3057 155 29 39 chrY 22117358 22117920 -29395664 + LTR6A LTR ERV1 9 564 0 3060 109 15 0 chrY 22118518 22119331 -29394253 + L1P2 LINE L1 4909 5734 -420 12840 163 3 7 chrY 22119331 22121566 -29392018 + HERVK22 LTR ERVK 46 2271 -4566 1796 183 30 158 chrY 22121566 22122206 -29391378 - LTR6A LTR ERV1 0 564 1 12188 162 2 12 chrY 22122206 22124761 -29388823 + HERVK22 LTR ERVK 2267 4773 -2064 2491 180 15 26 chrY 22124760 22125371 -29388213 + pTR5 LTR ERV1 742 1345 -1093 * 4118 129 15 128 chrY 22125386 22126313 -29387271 + LTR12 LTR ERV1 5 826 0 7520 164 9 13 chrY 22126313 22128275 -29385309 + HERVK22 LTR ERVK 4770 6835 -2 2889 187 25 3 chrY 22128276 22128844 -29384740 + LTR22 LTR ERVK 1 580 0 299 234 0 27 chrY 22129242 22129353 -29384231 + L1ME LINE L1 681 788 -5282 578 232 7 21 chrY 22129469 22129611 -29383973 + MLT1D LTR MaLR 301 440 -65 417 321 95 34 chrY 22129870 22130166 -29383418 - L2 LINE L2 -583 2731 2418 243 0 0 0 chrY 22130305 22130332 -29383252 + (A)n Simple_repeat Simple_repeat 1 27 0 214 331 91 0 chrY 22130569 22130690 -29382894 + MIR SINE MIR 53 184 -78 36 53 0 0 chrY 22131289 22131346 -29382238 + AT_rich Low_complexity Low_complexity 1 57 0 1219 169 16 93 chrY 22131513 22131826 -29381758 - MER52C LTR ERV1 0 1278 990 1102 96 0 0 chrY 22131927 22132073 -29381511 - AluY SINE Alu -3 308 163 1810 186 0 3 chrY 22132254 22132565 -29381019 + AluSx SINE Alu 1 310 -2 10117 131 8 0 chrY 22132565 22135073 -29378511 + L1PA7 LINE L1 3596 6146 -8 377 225 70 7 chrY 22135659 22135801 -29377783 + L1M4 LINE L1 4457 4607 -1539 2045 140 0 0 chrY 22137277 22137570 -29376014 - AluSp SINE Alu -20 293 1 677 311 33 36 chrY 22139218 22139523 -29374061 + MLT1J LTR MaLR 103 406 -105 39 68 0 0 chrY 22139854 22139928 -29373656 + AT_rich Low_complexity Low_complexity 1 74 0 2239 96 12 0 chrY 22140231 22140575 -29373009 + THE1-int LTR MaLR 1 348 -1232 1644 137 14 11 chrY 22140576 22140860 -29372724 + LTR19B LTR ERV1 296 580 0 3836 159 19 38 chrY 22140860 22141733 -29371851 + HERVFH19I LTR ERV1 1 921 -4665 * 4553 148 29 18 chrY 22141719 22142544 -29371040 + HERVFH19I LTR ERV1 1129 1962 -3624 2260 92 0 3 chrY 22142974 22143277 -29370307 - AluY SINE Alu -9 302 1 242 113 42 14 chrY 22143946 22144017 -29369567 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 26 30 0 0 chrY 22144489 22144522 -29369062 + AT_rich Low_complexity Low_complexity 1 33 0 272 208 23 123 chrY 22144833 22144963 -29368621 + LTR4 LTR ERV1 1 117 -479 592 234 46 50 chrY 22145199 22145460 -29368124 + LTR4 LTR ERV1 337 596 0 1194 208 30 66 chrY 22145579 22145682 -29367902 + HERVFH19I LTR ERV1 1746 1851 -3366 1837 168 0 0 chrY 22145682 22145991 -29367593 + AluSc SINE Alu 1 309 0 1194 208 30 66 chrY 22145991 22146281 -29367303 + HERVFH19I LTR ERV1 1851 2126 -3091 * 5025 210 37 4 chrY 22146279 22147556 -29366028 + HERVFH19I LTR ERV1 3336 4593 -422 1448 185 67 74 chrY 22147551 22147790 -29365794 + HERVFH19I LTR ERV1 4718 4957 -629 * 454 49 0 0 chrY 22147790 22147851 -29365733 - AluY SINE Alu -7 305 245 1448 185 67 74 chrY 22147851 22148092 -29365492 + HERVFH19I LTR ERV1 4957 5254 -332 1220 156 4 31 chrY 22148088 22148313 -29365271 + HERVFH19I LTR ERV1 7500 7718 -1 * 1954 147 34 0 chrY 22148314 22148668 -29364916 + LTR19B LTR ERV1 1 366 -214 3070 110 17 4 chrY 22148668 22149148 -29364436 + LTR15 LTR ERV1 1 486 -7 1269 153 9 0 chrY 22149155 22149371 -29364213 + LTR19B LTR ERV1 363 580 0 318 351 90 64 chrY 22149479 22149946 -29363638 - L2 LINE L2 -4 3309 2831 1811 162 17 3 chrY 22150332 22150634 -29362950 + AluSp SINE Alu 1 306 -7 439 273 30 8 chrY 22151685 22151817 -29361767 + MIR3 SINE MIR 66 200 -8 256 360 30 0 chrY 22151980 22152080 -29361504 - MIR SINE MIR -130 132 30 1282 185 17 101 chrY 22152869 22153274 -29360310 - MLT1B LTR MaLR -19 371 1 22 35 0 0 chrY 22153863 22153892 -29359692 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chrY 22154104 22154129 -29359455 + AT_rich Low_complexity Low_complexity 1 25 0 2088 103 6 44 chrY 22154445 22154766 -29358818 - AluY SINE Alu 0 311 3 217 239 28 70 chrY 22154875 22154946 -29358638 - MIR3 SINE MIR -38 170 103 27 29 0 0 chrY 22155476 22155510 -29358074 + AT_rich Low_complexity Low_complexity 1 34 0 2143 95 0 3 chrY 22155696 22156000 -29357584 + AluY SINE Alu 1 303 -8 186 71 0 0 chrY 22156743 22156771 -29356813 + (A)n Simple_repeat Simple_repeat 1 28 0 575 294 34 21 chrY 22156772 22157010 -29356574 + MLT1E LTR MaLR 35 275 -192 271 195 37 24 chrY 22157021 22157103 -29356481 + (TA)n Simple_repeat Simple_repeat 1 83 0 388 348 33 22 chrY 22157310 22157494 -29356090 + L2 LINE L2 294 479 -2835 243 326 68 14 chrY 22157548 22157695 -29355889 + L2 LINE L2 639 793 -2521 1482 218 3 24 chrY 22157717 22158011 -29355573 - AluJo SINE Alu -24 288 1 1018 258 13 30 chrY 22158186 22158485 -29355099 + MLT1E LTR MaLR 298 591 -2 419 314 0 0 chrY 22159378 22159518 -29354066 + MIR SINE MIR 98 237 -25 200 342 51 44 chrY 22159597 22159755 -29353829 - MIR SINE MIR -56 206 48 2256 102 0 19 chrY 22160336 22160650 -29352934 - AluY SINE Alu -3 308 1 334 268 12 0 chrY 22162995 22163077 -29350507 - L2 LINE L2 0 3313 3231 305 334 59 59 chrY 22163239 22163595 -29349989 + HAL1b LINE L1 304 659 -689 216 0 0 0 chrY 22163649 22163673 -29349911 + (CA)n Simple_repeat Simple_repeat 2 25 0 792 207 0 30 chrY 22163677 22163846 -29349738 + FRAM SINE Alu 7 170 -6 22 35 0 0 chrY 22163878 22163907 -29349677 + AT_rich Low_complexity Low_complexity 1 29 0 1386 225 7 14 chrY 22163907 22164200 -29349384 - AluSx SINE Alu -21 291 1 1414 270 87 11 chrY 22164786 22165408 -29348176 + LTR65 LTR ERV1 1 669 0 2328 84 7 0 chrY 22165636 22165945 -29347639 + AluY SINE Alu 1 311 0 195 42 0 0 chrY 22165964 22165988 -29347596 + (T)n Simple_repeat Simple_repeat 1 24 0 2176 94 3 25 chrY 22165993 22166311 -29347273 - AluY SINE Alu 0 311 1 322 69 35 0 chrY 22166313 22166371 -29347213 + (TTTTTA)n Simple_repeat Simple_repeat 2 61 0 1299 182 73 11 chrY 22166373 22166648 -29346936 + AluSg SINE Alu 2 293 -17 324 320 148 47 chrY 22167082 22167466 -29346118 + L1MEc LINE L1 56 478 -5918 823 256 13 76 chrY 22167479 22167873 -29345711 - L1M3de LINE L1 -5277 1456 1088 * 1394 272 95 69 chrY 22167845 22168671 -29344913 - L1M2b LINE L1 -6372 837 15 1829 155 6 22 chrY 22168687 22169003 -29344581 - AluSx SINE Alu -1 311 1 2255 282 42 55 chrY 22169040 22170173 -29343411 - L1M3de LINE L1 -4602 2051 286 225 306 56 0 chrY 22170751 22170823 -29342761 - L1M3de LINE L1 -5638 1491 1416 283 323 0 0 chrY 22170851 22170944 -29342640 - L1M3de LINE L1 -6284 845 753 24 32 0 0 chrY 22171441 22171472 -29342112 + AT_rich Low_complexity Low_complexity 1 31 0 270 247 47 24 chrY 22173308 22173393 -29340191 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 2347 244 89 41 chrY 22173407 22174485 -29339099 + LTR65-int LTR ERV1 287 1416 -3520 1927 167 10 0 chrY 22174498 22174797 -29338787 + AluSx SINE Alu 1 302 -10 334 216 13 98 chrY 22174884 22175037 -29338547 + MER31-int LTR ERV1 3676 3815 -1121 1153 186 0 83 chrY 22175118 22175371 -29338213 + AluJb SINE Alu 1 232 -80 291 28 0 0 chrY 22175397 22175433 -29338151 + (TA)n Simple_repeat Simple_repeat 1 36 0 658 243 107 27 chrY 22175433 22175920 -29337664 + MER31-int LTR ERV1 4125 4678 -258 640 246 48 66 chrY 22175929 22176071 -29337513 + MLT1A1 LTR MaLR 80 223 -142 1889 125 29 4 chrY 22176071 22176406 -29337178 + AluSc SINE Alu 1 342 0 2164 117 3 19 chrY 22176407 22176723 -29336861 + AluY SINE Alu 1 311 0 640 246 48 66 chrY 22176723 22176848 -29336736 + MLT1A1 LTR MaLR 222 346 -19 1414 216 16 13 chrY 22177142 22177448 -29336136 - AluJb SINE Alu 0 312 6 1384 197 28 28 chrY 22177962 22178246 -29335338 + AluSg SINE Alu 5 288 -22 837 133 22 0 chrY 22179119 22179254 -29334330 - AluSp/q SINE Alu -5 308 171 1187 206 86 37 chrY 22180332 22180760 -29332824 + L1M4 LINE L1 5297 5745 -429 1930 117 7 0 chrY 22180866 22181140 -29332444 + AluY SINE Alu 1 276 -35 509 0 16 0 chrY 22181140 22181201 -29332383 + (TA)n Simple_repeat Simple_repeat 2 63 0 1800 139 8 0 chrY 22181377 22181636 -29331948 + AluSc SINE Alu 1 261 -48 28 61 0 0 chrY 22181991 22182040 -29331544 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chrY 22182833 22182869 -29330715 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrY 22185968 22185996 -29327588 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrY 22186051 22186086 -29327498 + (CA)n Simple_repeat Simple_repeat 2 36 0 29 0 0 0 chrY 22186231 22186260 -29327324 + AT_rich Low_complexity Low_complexity 1 29 0 824 202 25 62 chrY 22186624 22186867 -29326717 - AluJb SINE Alu -78 234 1 1272 177 49 11 chrY 22186976 22187241 -29326343 + MER1B DNA MER1_type 1 275 -64 292 149 15 45 chrY 22187387 22187454 -29326130 + MER1B DNA MER1_type 256 320 -13 387 305 0 0 chrY 22187466 22187571 -29326013 - FLAM_C SINE Alu -23 110 6 22 0 0 0 chrY 22188874 22188896 -29324688 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 22189083 22189104 -29324480 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 22189174 22189195 -29324389 + AT_rich Low_complexity Low_complexity 1 21 0 27816 68 2 8 chrY 22189689 22194424 -29319160 - L1PA5 LINE L1 -2 6152 1446 5720 57 16 1 chrY 22194424 22195161 -29318423 - L1PA3 LINE L1 0 6155 5408 12281 47 0 1 chrY 22195161 22196763 -29316821 + L1PA3 LINE L1 3803 5403 -743 9562 117 3 0 chrY 22196779 22198235 -29315349 - L1PA5 LINE L1 -4686 1460 1 236 322 99 8 chrY 22199319 22199440 -29314144 + MIR SINE MIR 57 188 -74 330 26 0 0 chrY 22199716 22199755 -29313829 + (CA)n Simple_repeat Simple_repeat 2 40 0 1238 222 11 7 chrY 22199928 22200212 -29313372 + AluSx SINE Alu 13 297 -15 181 200 46 0 chrY 22200315 22200380 -29313204 + CT-rich Low_complexity Low_complexity 2 69 0 * 195 129 0 0 chrY 22200372 22200403 -29313181 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 625 155 47 20 chrY 22200403 22200551 -29313033 - FRAM SINE Alu 0 176 25 1812 247 58 26 chrY 22200646 22201356 -29312228 + L1MC1 LINE L1 5551 6311 -22 414 244 89 44 chrY 22201373 22201688 -29311896 - MER96B DNA MER1_type? -65 352 24 266 211 42 0 chrY 22201739 22201810 -29311774 - MER66A LTR ERV1 -2 476 403 840 221 38 52 chrY 22201852 22202142 -29311442 + pTR5 LTR ERV1 743 1028 -1410 4476 137 78 18 chrY 22202220 22202999 -29310585 + LTR12 LTR ERV1 1 826 0 53690 109 21 10 chrY 22202999 22211417 -29302167 + HERV9 LTR ERV1 1 8399 0 1489 92 369 137 chrY 22211470 22212099 -29301485 + LTR12 LTR ERV1 31 714 0 1077 225 92 22 chrY 22212146 22212462 -29301122 - MER66B LTR ERV1 -148 338 1 1531 201 33 6 chrY 22212462 22212791 -29300793 - MER66B-int LTR ERV1 0 6676 6339 1413 287 31 38 chrY 22212925 22213819 -29299765 - MER66-int LTR ERV1 -1579 6177 4855 1862 176 3 0 chrY 22213819 22214121 -29299463 + AluSc SINE Alu 1 303 -6 1413 287 31 38 chrY 22214121 22214354 -29299230 - MER66-int LTR ERV1 -2901 4855 4622 488 223 19 0 chrY 22214641 22214744 -29298840 - MER2 DNA MER2_type -235 110 6 400 295 28 51 chrY 22214872 22215126 -29298458 - L1M4 LINE L1 -1846 4300 4053 771 340 72 48 chrY 22215161 22215361 -29298223 - L1M4 LINE L1 -2192 3954 3760 1425 207 149 13 chrY 22215361 22215737 -29297847 + MSTA LTR MaLR 1 427 -1 771 340 72 48 chrY 22215737 22216433 -29297151 - L1M4 LINE L1 -2386 3760 3036 314 291 149 26 chrY 22216466 22216734 -29296850 - L1M4 LINE L1 -3210 2936 2636 221 102 0 92 chrY 22216821 22216919 -29296665 + (TTAA)n Simple_repeat Simple_repeat 3 91 0 30 77 0 0 chrY 22217224 22217289 -29296295 + AT_rich Low_complexity Low_complexity 1 65 0 22 94 0 0 chrY 22217489 22217553 -29296031 + AT_rich Low_complexity Low_complexity 1 64 0 1977 169 17 8 chrY 22218380 22218735 -29294849 - MLT2A1 LTR ERVL -86 358 1 2474 130 29 0 chrY 22218735 22219144 -29294440 - HERVL-A1 LTR ERVL 0 5654 5234 4788 150 22 27 chrY 22219208 22220085 -29293499 - MER61B-int LTR ERV1 -2934 2283 1409 1820 124 28 25 chrY 22220085 22220394 -29293190 - AluY SINE Alu 0 310 1 4788 150 22 27 chrY 22220394 22220443 -29293141 - MER61B-int LTR ERV1 -3808 1409 1361 1784 137 11 0 chrY 22220434 22220705 -29292879 - MER61B-int LTR ERV1 -4000 1217 944 * 2073 208 27 42 chrY 22220715 22221264 -29292320 - MER61B-int LTR ERV1 -4380 837 297 574 189 49 56 chrY 22221341 22221484 -29292100 - MER61B-int LTR ERV1 -5074 143 2 1630 232 22 11 chrY 22221484 22221608 -29291976 - MER61B LTR ERV1 0 425 304 201 39 0 0 chrY 22221608 22221634 -29291950 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1630 232 22 11 chrY 22221634 22221871 -29291713 - MER61B LTR ERV1 -121 304 60 1675 238 22 12 chrY 22221886 22222378 -29291206 - L1M2 LINE L1 -1745 4401 3905 * 2288 253 50 26 chrY 22222375 22223434 -29290150 + L1M2 LINE L1 4394 5480 -743 1208 290 12 14 chrY 22223446 22223977 -29289607 - BSR/Beta Satellite Satellite -49 530 1 586 258 25 35 chrY 22224071 22224982 -29288602 - BSR/Beta Satellite Satellite 0 901 1 371 253 82 16 chrY 22225005 22225156 -29288428 - BSR/Beta Satellite Satellite -2 160 1 1191 300 11 7 chrY 22225168 22225969 -29287615 - BSR/Beta Satellite Satellite 0 804 1 1469 251 33 12 chrY 22225985 22226769 -29286815 - BSR/Beta Satellite Satellite -44 800 1 231 385 0 0 chrY 22226843 22226947 -29286637 - BSR/Beta Satellite Satellite -31 121 18 653 282 22 21 chrY 22227080 22227879 -29285705 - BSR/Beta Satellite Satellite 0 800 1 236 425 0 0 chrY 22227897 22228036 -29285548 - BSR/Beta Satellite Satellite -1 141 3 * 990 300 27 32 chrY 22227913 22228097 -29285487 - BSR/Beta Satellite Satellite -27 1078 895 1975 127 6 29 chrY 22228097 22228413 -29285171 - AluY SINE Alu -2 309 1 990 300 27 32 chrY 22228413 22228997 -29284587 - BSR/Beta Satellite Satellite -210 895 1 590 289 11 21 chrY 22229175 22230113 -29283471 - BSR/Beta Satellite Satellite -43 929 1 459 262 5 10 chrY 22230237 22230368 -29283216 - BSR/Beta Satellite Satellite 0 130 1 409 364 98 3 chrY 22230381 22230678 -29282906 - BSR/Beta Satellite Satellite -48 331 7 1172 294 3 6 chrY 22230690 22231017 -29282567 - BSR/Beta Satellite Satellite -9 370 45 365 139 0 14 chrY 22231118 22231190 -29282394 + (TG)n Simple_repeat Simple_repeat 2 72 0 425 320 9 0 chrY 22231297 22231444 -29282140 - BSR/Beta Satellite Satellite -15 148 1 244 309 12 0 chrY 22231502 22231583 -29282001 - BSR/Beta Satellite Satellite -46 96 15 1506 272 8 3 chrY 22231645 22232078 -29281506 - BSR/Beta Satellite Satellite -49 435 1 492 280 43 28 chrY 22232168 22232654 -29280930 - BSR/Beta Satellite Satellite -4 493 1 625 257 27 35 chrY 22232816 22233213 -29280371 - BSR/Beta Satellite Satellite 0 394 1 981 291 16 15 chrY 22233251 22233752 -29279832 - BSR/Beta Satellite Satellite -47 501 1 591 273 23 26 chrY 22233769 22234849 -29278735 - BSR/Beta Satellite Satellite 0 1077 1 906 279 56 14 chrY 22234944 22235442 -29278142 - BSR/Beta Satellite Satellite -42 518 1 582 269 17 33 chrY 22235453 22235900 -29277684 - BSR/Beta Satellite Satellite 0 439 1 977 263 35 24 chrY 22235914 22236384 -29277200 - BSR/Beta Satellite Satellite -22 475 1 571 265 11 31 chrY 22236628 22237353 -29276231 - BSR/Beta Satellite Satellite -6 710 1 1236 290 12 9 chrY 22237627 22238241 -29275343 - BSR/Beta Satellite Satellite -49 615 1 593 253 2 19 chrY 22238377 22238689 -29274895 - BSR/Beta Satellite Satellite -1 306 1 1003 249 16 28 chrY 22238700 22239097 -29274487 - BSR/Beta Satellite Satellite -44 1673 1273 1745 248 77 15 chrY 22239097 22239576 -29274008 + LTR22 LTR ERVK 1 509 0 1003 249 16 28 chrY 22239576 22240393 -29273191 - BSR/Beta Satellite Satellite -444 1273 1 1027 248 24 40 chrY 22240404 22241225 -29272359 - BSR/Beta Satellite Satellite 0 807 1 789 266 45 35 chrY 22241282 22241572 -29272012 - BSR/Beta Satellite Satellite -64 315 23 624 277 22 19 chrY 22241663 22242591 -29270993 - BSR/Beta Satellite Satellite -1 931 1 253 295 58 19 chrY 22242634 22242773 -29270811 - BSR/Beta Satellite Satellite -1 144 1 420 283 0 0 chrY 22242857 22242956 -29270628 - BSR/Beta Satellite Satellite -43 99 1 864 342 12 0 chrY 22243011 22243330 -29270254 - BSR/Beta Satellite Satellite -48 331 9 958 269 97 10 chrY 22243347 22243645 -29269939 - BSR/Beta Satellite Satellite -9 370 47 278 311 11 11 chrY 22243662 22243752 -29269832 - BSR/Beta Satellite Satellite -46 96 7 1842 148 3 35 chrY 22243770 22244081 -29269503 + AluY SINE Alu 1 301 -10 613 249 34 19 chrY 22244089 22244817 -29268767 - BSR/Beta Satellite Satellite -16 739 1 266 300 91 9 chrY 22244865 22244975 -29268609 - BSR/Beta Satellite Satellite -3 376 258 562 242 13 46 chrY 22245133 22245521 -29268063 - BSR/Beta Satellite Satellite 0 375 1 539 266 3 36 chrY 22245573 22245803 -29267781 - BSR/Beta Satellite Satellite 0 222 1 309 347 8 0 chrY 22245820 22245944 -29267640 - BSR/Beta Satellite Satellite -11 131 7 1359 145 40 24 chrY 22245962 22246211 -29267373 - MER11B LTR ERVK 0 1236 984 8183 95 0 11 chrY 22246211 22247303 -29266281 - HERVK11 LTR ERVK -1349 6604 5525 * 11421 71 11 5 chrY 22247301 22248766 -29264818 - HERVK11 LTR ERVK -3352 4601 3128 4813 88 3 0 chrY 22248766 22249382 -29264202 - HERVK11 LTR ERVK -6171 1782 1165 3832 144 50 97 chrY 22249382 22250275 -29263309 - HERVK11 LTR ERVK -7102 851 1 4102 175 23 48 chrY 22250275 22251284 -29262300 - MER11C LTR ERVK 0 1071 1 1341 282 17 19 chrY 22251294 22251978 -29261606 - BSR/Beta Satellite Satellite -49 682 1 408 278 36 22 chrY 22252053 22252326 -29261258 - BSR/Beta Satellite Satellite -1 276 1 845 281 21 25 chrY 22252412 22253541 -29260043 - BSR/Beta Satellite Satellite -46 1123 1 991 302 21 18 chrY 22253608 22253942 -29259642 - BSR/Beta Satellite Satellite -16 363 29 547 269 21 31 chrY 22253965 22254321 -29259263 - BSR/Beta Satellite Satellite 0 352 1 495 275 13 32 chrY 22254396 22254834 -29258750 - BSR/Beta Satellite Satellite 0 429 1 1858 141 0 44 chrY 22254866 22255207 -29258377 - AluSg SINE Alu 0 310 1 1255 274 19 26 chrY 22255217 22256861 -29256723 - BSR/Beta Satellite Satellite -25 1632 1 327 379 8 0 chrY 22256943 22257100 -29256484 - BSR/Beta Satellite Satellite -15 158 1 659 276 24 28 chrY 22257262 22258142 -29255442 - BSR/Beta Satellite Satellite -33 875 1 553 256 18 29 chrY 22258171 22258372 -29255212 - BSR/Beta Satellite Satellite 0 198 1 1133 314 0 0 chrY 22258486 22258782 -29254802 - BSR/Beta Satellite Satellite -58 321 26 1248 268 16 29 chrY 22258853 22259938 -29253646 - BSR/Beta Satellite Satellite -46 1632 547 243 0 0 0 chrY 22259938 22259965 -29253619 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1248 268 16 29 chrY 22259965 22260506 -29253078 - BSR/Beta Satellite Satellite -1131 547 1 810 286 9 3 chrY 22260517 22260702 -29252882 - BSR/Beta Satellite Satellite 0 186 1 1951 171 0 3 chrY 22260750 22261060 -29252524 - AluSg SINE Alu -1 309 1 278 302 94 0 chrY 22261067 22261173 -29252411 - BSR/Beta Satellite Satellite -223 156 41 240 292 0 0 chrY 22261464 22261512 -29252072 - MIR SINE MIR -203 59 12 375 247 65 45 chrY 22262815 22262969 -29250615 - MIR3 SINE MIR -28 180 24 555 311 32 61 chrY 22264975 22265255 -29248329 - MLT1J LTR MaLR -14 497 226 343 251 36 35 chrY 22265843 22265991 -29247593 + MIR SINE MIR 35 178 -61 343 297 93 0 chrY 22266554 22266736 -29246848 - L1 LINE L1 -1427 4719 4521 1429 214 10 16 chrY 22266763 22267071 -29246513 + AluSc SINE Alu 1 306 -3 725 267 103 40 chrY 22267073 22267677 -29245907 - L1M4c LINE L1 -3271 2939 2298 315 313 52 22 chrY 22267731 22267999 -29245585 - L1M4c LINE L1 -4751 1461 1186 214 250 0 15 chrY 22268049 22268117 -29245467 + T-rich Low_complexity Low_complexity 3 69 0 321 367 44 24 chrY 22268205 22268453 -29245131 - L1M4c LINE L1 -4982 1159 907 189 0 0 0 chrY 22268519 22268540 -29245044 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 16773 59 2 6 chrY 22268561 22272130 -29241454 - L1PA4 LINE L1 -1 6154 2606 590 51 0 0 chrY 22272130 22272208 -29241376 + L1PA4 LINE L1 2527 2604 -3542 1492 246 23 63 chrY 22272989 22273346 -29240238 - LTR32 LTR ERVL -1 470 135 1776 192 3 0 chrY 22273346 22273648 -29239936 - AluSp SINE Alu -10 303 1 1492 246 23 63 chrY 22273648 22273765 -29239819 - LTR32 LTR ERVL -336 135 15 39067 48 23 1 chrY 22276288 22282303 -29231281 + L1PA2 LINE L1 4 6151 -4 23 0 0 0 chrY 22282308 22282331 -29231253 + AT_rich Low_complexity Low_complexity 1 23 0 1627 186 14 7 chrY 22282613 22282903 -29230681 + AluY SINE Alu 1 292 -19 1464 209 50 0 chrY 22284834 22284997 -29228587 - AluSc SINE Alu -12 297 113 200 59 29 0 chrY 22284997 22285031 -29228553 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1464 209 50 0 chrY 22285031 22285150 -29228434 - AluSc SINE Alu -196 113 1 6099 257 173 2 chrY 22285189 22286902 -29226682 + L1PA12 LINE L1 1 2007 -5574 1378 300 16 5 chrY 22286901 22287284 -29226300 + L1PA13 LINE L1 346 732 -6055 * 1289 262 55 19 chrY 22287301 22287824 -29225760 + L1PA13 LINE L1 2521 3062 -3735 1497 199 0 0 chrY 22289680 22289946 -29223638 + AluSq SINE Alu 9 274 -39 359 20 0 20 chrY 22289955 22290004 -29223580 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 212 186 17 34 chrY 22290372 22290431 -29223153 + A-rich Low_complexity Low_complexity 3 60 0 317 353 31 0 chrY 22290502 22290726 -29222858 + L1M4c LINE L1 1370 1600 -4784 2692 165 28 12 chrY 22290740 22291321 -29222263 - LTR10E LTR ERV1 -35 598 9 361 280 111 63 chrY 22291422 22292033 -29221551 + L1M4c LINE L1 2463 3102 -3280 1561 223 7 3 chrY 22292045 22292350 -29221234 - AluSc SINE Alu -3 306 1 2128 126 3 3 chrY 22292456 22292766 -29220818 - AluY SINE Alu -1 310 1 853 70 31 0 chrY 22292874 22293002 -29220582 - L1PA4 LINE L1 -4904 1242 1111 30346 53 7 2 chrY 22293002 22297760 -29215824 + L1PA4 LINE L1 1230 6014 -141 201 167 0 0 chrY 22297767 22297803 -29215781 + A-rich Low_complexity Low_complexity 1 36 0 260 304 15 0 chrY 22297803 22297938 -29215646 + L1 LINE L1 4696 4832 -1314 1053 292 19 12 chrY 22297949 22299117 -29214467 + BSR/Beta Satellite Satellite 1 1176 -21 558 255 16 45 chrY 22299154 22300267 -29213317 + BSR/Beta Satellite Satellite 1 1081 -47 1060 283 21 16 chrY 22300531 22301226 -29212358 + BSR/Beta Satellite Satellite 1 698 0 571 217 11 35 chrY 22301409 22301628 -29211956 + BSR/Beta Satellite Satellite 1 213 0 474 221 84 36 chrY 22301641 22301902 -29211682 + BSR/Beta Satellite Satellite 1 273 -4 1736 131 0 33 chrY 22301912 22302186 -29211398 + AluY SINE Alu 47 311 0 227 281 12 12 chrY 22302193 22302275 -29211309 + BSR/Beta Satellite Satellite 18 99 -43 320 359 4 0 chrY 22302407 22302558 -29211026 + BSR/Beta Satellite Satellite 1 252 0 1123 274 16 21 chrY 22302608 22303619 -29209965 + BSR/Beta Satellite Satellite 1 1005 -16 514 294 4 87 chrY 22303639 22303915 -29209669 + BSR/Beta Satellite Satellite 5 257 -122 314 278 14 62 chrY 22304023 22304167 -29209417 + BSR/Beta Satellite Satellite 2 138 -4 404 260 0 38 chrY 22304247 22304413 -29209171 + BSR/Beta Satellite Satellite 1 159 -53 30 0 0 0 chrY 22304424 22304454 -29209130 + AT_rich Low_complexity Low_complexity 1 30 0 438 290 25 8 chrY 22304457 22304971 -29208613 + BSR/Beta Satellite Satellite 1 522 -4 450 322 7 0 chrY 22305056 22305257 -29208327 + BSR/Beta Satellite Satellite 1 202 -6 747 290 83 14 chrY 22305377 22305653 -29207931 + BSR/Beta Satellite Satellite 36 330 -49 590 299 9 20 chrY 22305688 22306099 -29207485 + BSR/Beta Satellite Satellite 1 406 -20 523 268 4 32 chrY 22306232 22306450 -29207134 + BSR/Beta Satellite Satellite 1 211 -1 540 290 6 7 chrY 22306465 22306858 -29206726 + BSR/Beta Satellite Satellite 1 392 -21 240 355 35 14 chrY 22307015 22307156 -29206428 + BSR/Beta Satellite Satellite 3 146 -6 1244 280 15 6 chrY 22307245 22308459 -29205125 + BSR/Beta Satellite Satellite 1 1224 -19 1159 317 3 10 chrY 22308486 22308988 -29204596 + BSR/Beta Satellite Satellite 1 498 -2 505 275 20 36 chrY 22309019 22310016 -29203568 + BSR/Beta Satellite Satellite 1 980 0 874 274 12 10 chrY 22310269 22310746 -29202838 + BSR/Beta Satellite Satellite 1 477 -81 401 317 0 5 chrY 22310785 22310935 -29202649 + BSR/Beta Satellite Satellite 1 149 -21 553 273 12 24 chrY 22311000 22312040 -29201544 + BSR/Beta Satellite Satellite 1 1027 -6 1216 265 15 16 chrY 22312136 22312752 -29200832 + BSR/Beta Satellite Satellite 1 615 -15 656 276 11 32 chrY 22313035 22313743 -29199841 + BSR/Beta Satellite Satellite 1 692 -7 294 336 22 8 chrY 22313823 22313957 -29199627 + BSR/Beta Satellite Satellite 2 137 -15 916 261 66 32 chrY 22314060 22314384 -29199200 + BSR/Beta Satellite Satellite 1 312 -1121 8349 53 1 0 chrY 22314384 22315349 -29198235 - LTR5 LTR ERVK -3 966 1 916 261 66 32 chrY 22315349 22315446 -29198138 + BSR/Beta Satellite Satellite 312 1433 0 495 277 2 26 chrY 22315459 22315906 -29197678 + BSR/Beta Satellite Satellite 1 436 -50 1029 281 12 12 chrY 22315920 22316251 -29197333 + BSR/Beta Satellite Satellite 41 371 -8 1143 266 13 40 chrY 22316263 22316820 -29196764 + BSR/Beta Satellite Satellite 1 542 -35 402 249 41 14 chrY 22316882 22317016 -29196568 + BSR/Beta Satellite Satellite 1 137 -10 602 256 9 11 chrY 22317029 22317617 -29195967 + BSR/Beta Satellite Satellite 1 586 -63 4546 92 3 0 chrY 22317740 22318363 -29195221 - L1PA5 LINE L1 0 6154 5530 21618 96 24 8 chrY 22318366 22323456 -29190128 - L1PA5 LINE L1 -951 5195 3 1246 296 16 20 chrY 22323528 22325107 -29188477 + BSR/Beta Satellite Satellite 1 1571 -4 659 267 7 34 chrY 22325133 22325544 -29188040 + BSR/Beta Satellite Satellite 1 400 -1 584 285 16 23 chrY 22325658 22326401 -29187183 + BSR/Beta Satellite Satellite 1 737 -46 239 286 77 33 chrY 22326448 22326539 -29187045 + BSR/Beta Satellite Satellite 40 134 -18 225 244 0 0 chrY 22326565 22326610 -29186974 - BSR/Beta Satellite Satellite -46 96 52 483 295 17 24 chrY 22326638 22326920 -29186664 - BSR/Beta Satellite Satellite 0 280 1 1205 282 19 0 chrY 22326933 22327360 -29186224 - BSR/Beta Satellite Satellite -40 435 1 282 354 13 4 chrY 22327433 22327579 -29186005 - BSR/Beta Satellite Satellite -6 147 1 572 284 13 24 chrY 22327676 22328476 -29185108 - BSR/Beta Satellite Satellite -1 791 1 355 239 22 109 chrY 22328564 22328702 -29184882 - BSR/Beta Satellite Satellite 0 142 17 417 196 131 0 chrY 22328702 22328809 -29184775 - AluSp/q SINE Alu -1 312 192 474 300 4 21 chrY 22328821 22329006 -29184578 - BSR/Beta Satellite Satellite -15 181 1 890 258 39 78 chrY 22329029 22329386 -29184198 - BSR/Beta Satellite Satellite -11 368 26 680 261 23 32 chrY 22329508 22330482 -29183102 - BSR/Beta Satellite Satellite 0 964 1 462 261 9 21 chrY 22330602 22330741 -29182843 - BSR/Beta Satellite Satellite 0 137 1 750 294 80 0 chrY 22330809 22331047 -29182537 - BSR/Beta Satellite Satellite -122 257 1 1261 285 16 17 chrY 22331060 22332291 -29181293 - BSR/Beta Satellite Satellite -44 1228 1 320 317 20 20 chrY 22332406 22332548 -29181036 - BSR/Beta Satellite Satellite -3 142 1 547 266 12 44 chrY 22332713 22333320 -29180264 - BSR/Beta Satellite Satellite 0 587 1 959 311 13 17 chrY 22333446 22334182 -29179402 - BSR/Beta Satellite Satellite -25 732 1 478 272 25 0 chrY 22334277 22334454 -29179130 - BSR/Beta Satellite Satellite -3 181 1 4177 140 174 16 chrY 22334475 22335430 -29178154 - MER11B LTR ERVK -23 1213 1 621 255 19 28 chrY 22335431 22336222 -29177362 - BSR/Beta Satellite Satellite -4 783 1 509 263 19 19 chrY 22336233 22336440 -29177144 - BSR/Beta Satellite Satellite -4 206 1 1183 297 17 7 chrY 22336674 22337277 -29176307 - BSR/Beta Satellite Satellite -25 609 1 578 246 21 30 chrY 22337376 22338294 -29175290 - BSR/Beta Satellite Satellite 0 908 1 1221 292 12 19 chrY 22338307 22338958 -29174626 - BSR/Beta Satellite Satellite -44 646 1 365 197 0 0 chrY 22339008 22339069 -29174515 - BSR/Beta Satellite Satellite -40 339 279 1936 166 0 0 chrY 22339079 22339387 -29174197 + AluY SINE Alu 1 308 -3 25 0 0 0 chrY 22339387 22339412 -29174172 + AT_rich Low_complexity Low_complexity 1 25 0 743 266 21 21 chrY 22339432 22339994 -29173590 - BSR/Beta Satellite Satellite -2 562 1 293 281 40 48 chrY 22339995 22340223 -29173361 - L1M4 LINE L1 -1304 5078 4852 1316 176 0 127 chrY 22340349 22340673 -29172911 + AluSc SINE Alu 1 283 -16 336 24 0 0 chrY 22340673 22340714 -29172870 + (CA)n Simple_repeat Simple_repeat 2 42 0 557 276 148 17 chrY 22340718 22341139 -29172445 - L1M4 LINE L1 -3312 3070 2594 38451 96 8 4 chrY 22341146 22347271 -29166313 + L1PA5 LINE L1 2 6153 -1 251 282 19 0 chrY 22347323 22347426 -29166158 - L1M4 LINE L1 -3826 2556 2452 497 348 19 3 chrY 22347450 22347760 -29165824 - L1M4 LINE L1 -4712 1672 1358 233 235 0 85 chrY 22347783 22347936 -29165648 + T-rich Low_complexity Low_complexity 2 141 0 3469 286 192 30 chrY 22348052 22349707 -29163877 - L1PA13 LINE L1 -4525 2262 339 * 5276 268 7 23 chrY 22349705 22351461 -29162123 - L1PA12 LINE L1 -5577 2004 1 30 0 0 0 chrY 22351478 22351508 -29162076 + AT_rich Low_complexity Low_complexity 1 30 0 1159 191 37 0 chrY 22352678 22352893 -29160691 + AluSq SINE Alu 5 227 -86 600 248 0 0 chrY 22354236 22354361 -29159223 + FLAM_C SINE Alu 1 125 -8 738 162 34 0 chrY 22354365 22354482 -29159102 + AluSp SINE Alu 75 195 -118 415 175 0 0 chrY 22354482 22354545 -29159039 + AluS SINE Alu 232 294 -6 * 1462 233 3 39 chrY 22354539 22354870 -29158714 + LTR32 LTR ERVL 112 430 -41 180 0 0 0 chrY 22355249 22355269 -29158315 + (A)n Simple_repeat Simple_repeat 1 20 0 1303 242 44 30 chrY 22355733 22356030 -29157554 + AluSx SINE Alu 2 302 0 204 256 49 0 chrY 22356443 22356525 -29157059 + A-rich Low_complexity Low_complexity 5 90 0 202 238 20 14 chrY 22356536 22356683 -29156901 + A-rich Low_complexity Low_complexity 3 150 0 214 85 21 43 chrY 22356700 22356747 -29156837 + (TAAAAA)n Simple_repeat Simple_repeat 2 47 0 193 138 17 17 chrY 22356893 22356951 -29156633 + A-rich Low_complexity Low_complexity 2 59 0 453 309 32 14 chrY 22356980 22357200 -29156384 + L1 LINE L1 2647 2870 -3276 2428 207 49 27 chrY 22357258 22357813 -29155771 + LTR22 LTR ERVK 1 567 -13 1511 146 0 66 chrY 22357857 22358145 -29155439 + HERVK22 LTR ERVK 9 277 -6560 4408 118 106 86 chrY 22358150 22358960 -29154624 + LTR12 LTR ERV1 1 826 0 27352 113 14 10 chrY 22358961 22361416 -29152168 + Harlequin LTR ERV1 43 2485 -4453 2711 7 0 0 chrY 22361416 22361707 -29151877 + AluYa5 SINE Alu 1 291 -20 27352 113 14 10 chrY 22361707 22364058 -29149526 + Harlequin LTR ERV1 2485 4944 -1994 810 103 291 0 chrY 22364059 22364293 -29149291 + Harlequin LTR ERV1 840 1141 -5755 6289 115 6 0 chrY 22364298 22365187 -29148397 + Harlequin LTR ERV1 7506 8399 0 1502 142 99 11 chrY 22365187 22365565 -29148019 + LTR12 LTR ERV1 1 2032 -406 299 256 11 0 chrY 22365566 22365656 -29147928 + LTR30 LTR ERV1 553 643 -79 639 168 10 0 chrY 22365656 22365757 -29147827 + LTR12 LTR ERV1 613 714 0 2015 219 36 0 chrY 22365767 22366160 -29147424 + HERVK22 LTR ERVK 289 695 -6142 570 252 58 0 chrY 22366555 22366694 -29146890 + HERVK22 LTR ERVK 2327 2473 -4364 * 5214 195 40 27 chrY 22366689 22368489 -29145095 + HERVK22 LTR ERVK 2027 3802 -3035 3648 32 0 0 chrY 22368489 22368896 -29144688 + L1PA3 LINE L1 5748 6154 -1 5214 195 40 27 chrY 22368896 22369569 -29144015 + HERVK22 LTR ERVK 3802 6837 0 2879 194 24 26 chrY 22369571 22370147 -29143437 + LTR22 LTR ERVK 3 577 -3 240 59 0 0 chrY 22370242 22370276 -29143308 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1302 232 4 4 chrY 22370303 22370575 -29143009 - AluJb SINE Alu -27 285 14 481 263 45 20 chrY 22370628 22370826 -29142758 + L1M4 LINE L1 4672 4874 -1272 2169 194 23 44 chrY 22370833 22371267 -29142317 - MER61B LTR ERV1 0 425 1 1685 201 18 18 chrY 22371267 22371610 -29141974 - MER61B-int LTR ERV1 0 5217 4875 855 70 0 0 chrY 22371612 22371727 -29141857 + (GAAA)n Simple_repeat Simple_repeat 1 115 0 8955 184 16 14 chrY 22371729 22374333 -29139251 - MER61B-int LTR ERV1 -399 4818 2141 637 324 22 22 chrY 22374335 22374613 -29138971 - BSR/Beta Satellite Satellite -81 298 21 512 295 13 27 chrY 22374703 22374984 -29138600 - BSR/Beta Satellite Satellite 0 276 1 546 274 11 27 chrY 22374995 22375817 -29137767 - BSR/Beta Satellite Satellite 0 808 1 1132 310 15 4 chrY 22375833 22376492 -29137092 - BSR/Beta Satellite Satellite -19 666 1 700 245 14 22 chrY 22376506 22376955 -29136629 - BSR/Beta Satellite Satellite 0 445 1 737 281 65 33 chrY 22376968 22377455 -29136129 - BSR/Beta Satellite Satellite -7 502 1 368 331 23 0 chrY 22377489 22377622 -29135962 - BSR/Beta Satellite Satellite -15 137 2 548 269 6 33 chrY 22377830 22378394 -29135190 - BSR/Beta Satellite Satellite 0 548 1 294 321 28 0 chrY 22378411 22378520 -29135064 - BSR/Beta Satellite Satellite -4 148 37 1360 282 8 9 chrY 22378710 22379292 -29134292 - BSR/Beta Satellite Satellite -49 581 1 561 266 17 22 chrY 22379387 22380445 -29133139 - BSR/Beta Satellite Satellite 0 1051 1 585 321 0 2 chrY 22380506 22380817 -29132767 - BSR/Beta Satellite Satellite -44 310 1 1105 265 24 21 chrY 22380875 22381203 -29132381 - BSR/Beta Satellite Satellite -16 363 35 569 242 9 60 chrY 22381238 22381919 -29131665 - BSR/Beta Satellite Satellite 0 646 1 670 246 46 8 chrY 22381932 22382120 -29131464 - BSR/Beta Satellite Satellite -27 195 1 1025 300 15 2 chrY 22382137 22382600 -29130984 - BSR/Beta Satellite Satellite -44 468 1 1184 273 22 26 chrY 22382616 22383908 -29129676 - BSR/Beta Satellite Satellite -44 1287 1 300 313 33 26 chrY 22383921 22384120 -29129464 - BSR/Beta Satellite Satellite -15 200 1 679 250 34 26 chrY 22384354 22385696 -29127888 - BSR/Beta Satellite Satellite -14 1352 1 1339 268 23 9 chrY 22385815 22387532 -29126052 - BSR/Beta Satellite Satellite -44 1740 1 374 357 14 0 chrY 22387605 22387774 -29125810 - BSR/Beta Satellite Satellite -3 171 1 610 281 9 22 chrY 22387859 22388558 -29125026 - BSR/Beta Satellite Satellite -2 689 1 583 278 11 31 chrY 22388600 22389002 -29124582 - BSR/Beta Satellite Satellite -4 394 1 740 272 10 96 chrY 22389065 22389190 -29124394 - BSR/Beta Satellite Satellite -49 330 196 1745 159 0 4 chrY 22389190 22389497 -29124087 + AluSc SINE Alu 3 308 0 740 272 10 96 chrY 22389497 22389682 -29123902 - BSR/Beta Satellite Satellite -183 196 46 653 274 12 19 chrY 22389804 22390884 -29122700 - BSR/Beta Satellite Satellite 0 1072 1 382 263 6 6 chrY 22390933 22391065 -29122519 - BSR/Beta Satellite Satellite -32 132 1 970 311 23 12 chrY 22391077 22391736 -29121848 - BSR/Beta Satellite Satellite -9 666 1 678 249 2 41 chrY 22391807 22392158 -29121426 - BSR/Beta Satellite Satellite 0 337 1 1009 289 17 2 chrY 22392217 22392587 -29120997 - BSR/Beta Satellite Satellite -25 375 1 386 292 32 8 chrY 22392734 22392886 -29120698 - BSR/Beta Satellite Satellite -3 155 1 235 281 0 0 chrY 22392934 22392998 -29120586 - BSR/Beta Satellite Satellite -64 78 15 1419 273 16 21 chrY 22393035 22394529 -29119055 - BSR/Beta Satellite Satellite -49 1486 1 618 239 21 11 chrY 22394632 22395301 -29118283 - BSR/Beta Satellite Satellite 0 675 1 620 234 12 20 chrY 22395347 22395581 -29118003 - BSR/Beta Satellite Satellite 0 232 1 1268 287 12 10 chrY 22395643 22396850 -29116734 - BSR/Beta Satellite Satellite 0 1209 1 468 279 9 8 chrY 22396896 22397078 -29116506 - BSR/Beta Satellite Satellite -45 182 1 2269 208 27 29 chrY 22397078 22397597 -29115987 + LTR22 LTR ERVK 1 518 -62 260 222 0 19 chrY 22397615 22397669 -29115915 - BSR/Beta Satellite Satellite -326 53 1 314 333 42 14 chrY 22397687 22397940 -29115644 - BSR/Beta Satellite Satellite -3 260 1 609 255 8 28 chrY 22398059 22398694 -29114890 - BSR/Beta Satellite Satellite 0 622 1 1303 305 10 12 chrY 22398882 22399586 -29113998 - BSR/Beta Satellite Satellite -49 702 1 633 249 20 39 chrY 22399718 22400719 -29112865 - BSR/Beta Satellite Satellite 0 981 1 1142 295 16 12 chrY 22400779 22402330 -29111254 - BSR/Beta Satellite Satellite -25 1556 1 338 261 30 64 chrY 22402355 22402469 -29111115 - BSR/Beta Satellite Satellite -12 495 379 1877 122 47 4 chrY 22402469 22402772 -29110812 - AluSq SINE Alu 0 313 1 338 261 30 64 chrY 22402772 22402868 -29110716 - BSR/Beta Satellite Satellite -128 379 1 258 295 49 16 chrY 22402965 22403087 -29110497 - BSR/Beta Satellite Satellite -16 126 1 655 249 15 42 chrY 22403162 22403664 -29109920 - BSR/Beta Satellite Satellite 0 488 1 469 300 10 35 chrY 22403731 22404151 -29109433 - BSR/Beta Satellite Satellite -4 409 1 1290 305 7 10 chrY 22404162 22404566 -29109018 - BSR/Beta Satellite Satellite -49 402 1 594 240 30 32 chrY 22404663 22405117 -29108467 - BSR/Beta Satellite Satellite -3 452 1 2317 106 0 3 chrY 22405140 22405452 -29108132 + AluY SINE Alu 1 311 0 648 256 13 25 chrY 22405457 22406049 -29107535 - BSR/Beta Satellite Satellite 0 584 1 1023 309 4 4 chrY 22406110 22406570 -29107014 - BSR/Beta Satellite Satellite -44 460 1 1086 273 9 19 chrY 22406586 22406908 -29106676 - BSR/Beta Satellite Satellite -16 363 45 301 304 11 11 chrY 22406923 22407015 -29106569 - BSR/Beta Satellite Satellite -46 96 5 1238 270 26 34 chrY 22407029 22408652 -29104932 - BSR/Beta Satellite Satellite -1 1609 1 541 289 15 18 chrY 22408722 22409047 -29104537 - BSR/Beta Satellite Satellite -3 324 1 1333 277 32 3 chrY 22409172 22409586 -29103998 - BSR/Beta Satellite Satellite -45 425 1 278 380 0 0 chrY 22409639 22409796 -29103788 - BSR/Beta Satellite Satellite -12 157 1 553 254 27 40 chrY 22409905 22410603 -29102981 - BSR/Beta Satellite Satellite 0 689 1 524 281 15 31 chrY 22410920 22411209 -29102375 - BSR/Beta Satellite Satellite -9 284 1 738 256 22 34 chrY 22411224 22412149 -29101435 - BSR/Beta Satellite Satellite 0 913 1 1349 307 16 16 chrY 22412193 22412897 -29100687 - BSR/Beta Satellite Satellite -3 704 1 561 275 11 35 chrY 22412951 22413712 -29099872 - BSR/Beta Satellite Satellite -44 742 1 538 285 9 26 chrY 22413870 22414194 -29099390 - BSR/Beta Satellite Satellite -4 318 1 1399 257 0 0 chrY 22414257 22414553 -29099031 - BSR/Beta Satellite Satellite -49 330 35 1296 282 21 12 chrY 22414660 22416568 -29097016 - BSR/Beta Satellite Satellite -13 1925 1 543 271 19 35 chrY 22416639 22417480 -29096104 - BSR/Beta Satellite Satellite 0 827 1 189 178 0 0 chrY 22417505 22417550 -29096034 + T-rich Low_complexity Low_complexity 4 48 0 1239 299 23 7 chrY 22417554 22418352 -29095232 - BSR/Beta Satellite Satellite -3 811 1 1457 262 23 18 chrY 22418433 22419252 -29094332 - BSR/Beta Satellite Satellite -44 823 1 357 341 18 11 chrY 22419272 22419490 -29094094 - BSR/Beta Satellite Satellite -14 219 1 627 261 18 32 chrY 22419660 22420270 -29093314 - BSR/Beta Satellite Satellite 0 601 1 243 330 11 0 chrY 22420336 22420424 -29093160 - BSR/Beta Satellite Satellite -11 131 43 594 261 5 36 chrY 22420493 22420753 -29092831 - BSR/Beta Satellite Satellite 0 252 1 1325 294 5 7 chrY 22420829 22421166 -29092418 - BSR/Beta Satellite Satellite -49 336 1 1087 255 15 39 chrY 22421264 22423152 -29090432 - BSR/Beta Satellite Satellite -44 1842 1 1120 309 22 18 chrY 22423224 22423983 -29089601 - BSR/Beta Satellite Satellite -25 761 1 529 274 18 29 chrY 22424048 22425142 -29088442 - BSR/Beta Satellite Satellite 0 1082 1 1171 262 46 19 chrY 22425208 22426803 -29086781 - BSR/Beta Satellite Satellite -44 1638 1 235 143 0 24 chrY 22426821 22426863 -29086721 - BSR/Beta Satellite Satellite -18 361 321 271 359 28 7 chrY 22426890 22427032 -29086552 - BSR/Beta Satellite Satellite -6 146 2 595 259 13 29 chrY 22427098 22427814 -29085770 - BSR/Beta Satellite Satellite -2 704 1 331 373 0 0 chrY 22427959 22428077 -29085507 - BSR/Beta Satellite Satellite -21 121 4 577 243 21 43 chrY 22428153 22428368 -29085216 - BSR/Beta Satellite Satellite -4 210 1 792 336 13 10 chrY 22428415 22428713 -29084871 - BSR/Beta Satellite Satellite -60 319 21 546 276 33 14 chrY 22428801 22429921 -29083663 - BSR/Beta Satellite Satellite 0 1141 1 291 319 11 0 chrY 22430062 22430156 -29083428 - BSR/Beta Satellite Satellite -47 95 1 1137 294 10 3 chrY 22430266 22430870 -29082714 - BSR/Beta Satellite Satellite -9 608 1 946 253 95 16 chrY 22430940 22431707 -29081877 - BSR/Beta Satellite Satellite -44 827 1 305 292 19 14 chrY 22431799 22431924 -29081660 - BSR/Beta Satellite Satellite -3 125 1 231 237 68 0 chrY 22432017 22432076 -29081508 - BSR/Beta Satellite Satellite -15 137 75 476 287 27 29 chrY 22432097 22432886 -29080698 - BSR/Beta Satellite Satellite -21 787 1 1061 289 7 17 chrY 22432973 22433610 -29079974 - BSR/Beta Satellite Satellite -49 630 1 1225 285 13 22 chrY 22433713 22435641 -29077943 - BSR/Beta Satellite Satellite -3 1912 1 565 261 24 37 chrY 22435674 22435996 -29077588 - BSR/Beta Satellite Satellite -8 317 1 339 324 53 10 chrY 22436005 22436304 -29077280 - L1 LINE L1 -1314 4832 4521 766 175 54 60 chrY 22436333 22436499 -29077085 + AluSg/x SINE Alu 138 302 -10 888 282 93 44 chrY 22436500 22437135 -29076449 - L1M4c LINE L1 -3272 3110 2445 482 309 39 25 chrY 22437160 22437445 -29076139 - L1M4c LINE L1 -4726 1658 1370 236 175 25 62 chrY 22437511 22437591 -29075993 + T-rich Low_complexity Low_complexity 3 79 0 651 189 0 0 chrY 22437740 22437846 -29075738 - AluSq/x SINE Alu -205 107 2 4480 271 138 35 chrY 22439214 22439658 -29073926 - L1PA13 LINE L1 -3635 3162 2765 277 23 0 45 chrY 22439658 22439702 -29073882 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 4480 271 138 35 chrY 22439702 22439857 -29073727 - L1PA13 LINE L1 -4032 2765 2627 5611 169 20 45 chrY 22439857 22440951 -29072633 + MER11C LTR ERVK 1 1067 -4 4480 271 138 35 chrY 22440951 22442906 -29070678 - L1PA13 LINE L1 -4170 2627 339 * 5994 254 9 4 chrY 22442904 22444631 -29068953 - L1PA12 LINE L1 -5577 2004 1 1717 179 3 7 chrY 22444670 22444971 -29068613 + AluSc SINE Alu 1 300 -9 2108 116 3 31 chrY 22445217 22445560 -29068024 - AluSp SINE Alu 0 334 1 1788 180 0 0 chrY 22447191 22447486 -29066098 - AluY SINE Alu -16 295 1 507 60 0 0 chrY 22448783 22448850 -29064734 + (CA)n Simple_repeat Simple_repeat 2 68 0 1842 136 17 10 chrY 22549844 22550139 -28963445 - AluSx SINE Alu -15 297 1 2436 51 3 29 chrY 22550478 22550791 -28962793 - AluY SINE Alu -6 305 1 1948 150 0 19 chrY 22551018 22551332 -28962252 + AluJb SINE Alu 1 308 -4 202 294 110 55 chrY 22551468 22551631 -28961953 + MIR3 SINE MIR 5 176 -32 2348 177 86 35 chrY 22551717 22552320 -28961264 - L1MB8 LINE L1 0 6178 5545 1521 174 38 51 chrY 22552676 22552860 -28960724 - AluJo SINE Alu 0 312 132 2409 84 0 0 chrY 22552860 22553159 -28960425 - AluY SINE Alu -12 299 1 1521 174 38 51 chrY 22553159 22553290 -28960294 - AluJo SINE Alu -180 132 1 263 254 0 0 chrY 22556841 22556900 -28956684 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 189 0 0 0 chrY 22557890 22557911 -28955673 + (A)n Simple_repeat Simple_repeat 1 21 0 421 243 86 33 chrY 22558885 22559037 -28954547 - MER5A DNA MER1_type -23 166 7 25 31 0 0 chrY 22559693 22559725 -28953859 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chrY 22559905 22559927 -28953657 + (T)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chrY 22560045 22560073 -28953511 + AT_rich Low_complexity Low_complexity 1 28 0 433 270 95 0 chrY 22560179 22560327 -28953257 + MIR SINE MIR 53 214 -48 3420 144 29 15 chrY 22560947 22561565 -28952019 - L1MA4 LINE L1 -6 6294 5668 9690 185 25 103 chrY 22561565 22563105 -28950479 - L1 LINE L1 -1374 5793 4134 2331 93 0 3 chrY 22563105 22563417 -28950167 - AluY SINE Alu 0 311 1 9690 185 25 103 chrY 22563417 22564273 -28949311 - L1 LINE L1 -3033 4134 3782 279 54 0 0 chrY 22564273 22564310 -28949274 + (TA)n Simple_repeat Simple_repeat 2 38 0 9690 185 25 103 chrY 22564310 22565269 -28948315 - L1 LINE L1 -3385 3782 2749 9010 178 53 61 chrY 22565266 22567190 -28946394 - L1 LINE L1 -5247 1921 13 * 449 268 100 50 chrY 22567310 22567530 -28946054 - MIR SINE MIR -18 244 14 3196 207 63 36 chrY 22567658 22568125 -28945459 - L1MB5 LINE L1 -9 6165 5712 4661 103 3 7 chrY 22568125 22568807 -28944777 - L1PA14 LINE L1 0 6161 5483 3196 207 63 36 chrY 22568807 22569604 -28943980 - L1MB5 LINE L1 -462 5712 4864 564 217 7 0 chrY 22569983 22570121 -28943463 - L1MA10 LINE L1 -4 6330 6192 1678 229 5 17 chrY 22570134 22570549 -28943035 - L1ME1 LINE L1 -179 5987 5578 446 287 31 31 chrY 22571026 22571155 -28942429 - MER5B DNA MER1_type 0 178 50 2662 198 75 29 chrY 22571178 22571709 -28941875 - L1ME2 LINE L1 -13 6151 5581 2044 137 0 3 chrY 22571709 22572009 -28941575 - AluSg SINE Alu -6 304 6 2662 198 75 29 chrY 22572009 22572144 -28941440 - L1ME2 LINE L1 -583 5581 5454 277 204 0 0 chrY 22572219 22572268 -28941316 - MER5B DNA MER1_type -129 49 1 1982 151 3 3 chrY 22573688 22574013 -28939571 + L1PB3 LINE L1 5829 6153 -1 417 286 105 54 chrY 22574658 22574878 -28938706 + L1ME4a LINE L1 5571 5815 -306 778 260 8 68 chrY 22574878 22575113 -28938471 - MER58A DNA MER1_type -3 221 1 417 286 105 54 chrY 22575113 22575224 -28938360 + L1ME4a LINE L1 5815 5919 -202 378 0 0 0 chrY 22575244 22575286 -28938298 + (TA)n Simple_repeat Simple_repeat 2 43 0 253 276 17 52 chrY 22575289 22575405 -28938179 + HAL1b LINE L1 1203 1314 -34 22 0 0 0 chrY 22575405 22575427 -28938157 + AT_rich Low_complexity Low_complexity 1 22 0 343 232 81 10 chrY 22575464 22575563 -28938021 - MER91C DNA MER1_type -2 138 33 379 301 57 16 chrY 22575605 22575728 -28937856 - L2 LINE L2 -4 3309 3182 191 279 16 16 chrY 22575846 22575907 -28937677 - MIR SINE MIR -61 147 87 404 277 0 0 chrY 22576225 22576337 -28937247 + HAL1b LINE L1 1217 1328 -20 260 346 96 0 chrY 22576445 22576549 -28937035 + L2 LINE L2 3156 3269 -3 1643 121 17 69 chrY 22576941 22577292 -28936292 + Tigger4(Zombi) DNA MER2_type 6 2730 -1 24 0 0 0 chrY 22577814 22577838 -28935746 + AT_rich Low_complexity Low_complexity 1 24 0 779 215 30 8 chrY 22577941 22578132 -28935452 - L1MA9 LINE L1 -182 6118 5921 366 203 43 0 chrY 22578138 22578207 -28935377 - Tigger2a DNA MER2_type -2 442 371 1906 171 38 26 chrY 22578271 22578617 -28934967 - Tigger2a DNA MER2_type -72 362 13 2952 129 35 210 chrY 22578618 22579283 -28934301 - L1 LINE L1 -1342 4804 4382 867 0 0 0 chrY 22579283 22579411 -28934173 + L1PA4 LINE L1 6049 6178 0 2952 129 35 210 chrY 22579411 22579778 -28933806 - L1 LINE L1 -1764 4382 3952 5001 210 83 23 chrY 22579787 22581015 -28932569 - L1ME1 LINE L1 -9 6226 4828 450 83 0 0 chrY 22581015 22581087 -28932497 + (CA)n Simple_repeat Simple_repeat 2 73 0 5001 210 83 23 chrY 22581087 22581892 -28931692 - L1ME1 LINE L1 -1407 4828 4073 2166 165 38 36 chrY 22581892 22582443 -28931141 - MLT2A2 LTR ERVL 0 554 1 5080 232 33 47 chrY 22582443 22582961 -28930623 - L1ME1 LINE L1 -2138 4077 3553 1905 155 0 16 chrY 22582961 22583271 -28930313 - AluSx SINE Alu -1 311 7 5080 232 33 47 chrY 22583271 22583542 -28930042 - L1ME1 LINE L1 -2662 3553 3280 1846 162 0 13 chrY 22583542 22583851 -28929733 - AluSq SINE Alu -4 309 5 5080 232 33 47 chrY 22583851 22584762 -28928822 - L1ME1 LINE L1 -2935 3280 2400 698 198 69 135 chrY 22584764 22585127 -28928457 - MER76 LTR ERV 0 688 350 755 88 0 26 chrY 22585127 22585241 -28928343 + AluSg/x SINE Alu 200 310 0 870 189 0 0 chrY 22585252 22585432 -28928152 + GA-rich Low_complexity Low_complexity 1 180 0 632 230 108 65 chrY 22585464 22585742 -28927842 - MER76 LTR ERV -380 308 19 529 174 0 20 chrY 22585825 22585923 -28927661 + AluSg1 SINE Alu 2 97 -212 1610 196 55 81 chrY 22585930 22586497 -28927087 - L1ME1 LINE L1 -3996 2400 1849 360 59 0 0 chrY 22586505 22586556 -28927028 - L1MB4 LINE L1 -1 6179 6129 4082 149 58 5 chrY 22586556 22587228 -28926356 - MER50 LTR ERV1 -26 708 1 1752 185 3 0 chrY 22587233 22587530 -28926054 - AluJb SINE Alu -9 303 6 308 296 102 9 chrY 22587540 22587648 -28925936 - MER50 LTR ERV1 -605 129 12 310 111 95 16 chrY 22587655 22587718 -28925866 - LTR8A LTR ERV1 -659 68 1 377 255 114 60 chrY 22587835 22588182 -28925402 - MLT1H LTR MaLR 0 549 66 233 290 29 14 chrY 22588760 22588829 -28924755 + L2 LINE L2 3137 3206 -66 * 527 272 64 53 chrY 22588825 22589108 -28924476 + L2 LINE L2 2472 2757 -557 367 236 123 0 chrY 22589124 22589230 -28924354 + MER63 DNA MER1_type 1 745 -317 524 241 0 6 chrY 22589232 22589402 -28924182 + CT-rich Low_complexity Low_complexity 1 169 0 296 246 167 26 chrY 22589410 22589524 -28924060 + L2 LINE L2 3180 3309 -4 329 283 20 0 chrY 22589717 22589821 -28923763 - MIR SINE MIR -59 149 38 1198 73 0 11 chrY 22590645 22590822 -28922762 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 847 182 0 26 chrY 22590900 22591054 -28922530 - AluJo SINE Alu -160 152 3 215 333 63 9 chrY 22591071 22591182 -28922402 - MIR SINE MIR -76 186 70 198 0 0 0 chrY 22591438 22591460 -28922124 + (A)n Simple_repeat Simple_repeat 1 22 0 241 275 50 50 chrY 22592350 22592430 -28921154 + MLT1J2 LTR MaLR 69 129 -321 729 184 16 40 chrY 22592708 22592833 -28920751 - FLAM_A SINE Alu -11 122 1 2412 185 43 19 chrY 22593126 22593655 -28919929 - L1MB4 LINE L1 -354 5826 5285 729 205 187 0 chrY 22593785 22593951 -28919633 - MIR SINE MIR -37 225 29 1377 279 66 16 chrY 22593971 22594470 -28919114 - MLT1L LTR MaLR -91 524 1 268 268 94 55 chrY 22595418 22595545 -28918039 + L3 LINE CR1 1423 1554 -23 606 228 7 16 chrY 22595618 22595774 -28917810 - MIR SINE MIR -59 203 46 274 227 27 27 chrY 22596872 22596947 -28916637 - MIR SINE MIR -131 131 57 323 212 0 0 chrY 22597615 22597681 -28915903 - MER116 DNA Mariner -6 74 9 1692 241 23 24 chrY 22598377 22598682 -28914902 + MER119 DNA MER1_type 1 358 -225 2299 85 0 31 chrY 22598682 22599001 -28914583 + AluY SINE Alu 1 309 -2 1692 241 23 24 chrY 22599001 22599227 -28914357 + MER119 DNA MER1_type 358 583 0 5310 146 92 91 chrY 22599233 22601056 -28912528 + pTR5 LTR ERV1 743 2438 0 36407 95 6 7 chrY 22601059 22606006 -28907578 + Harlequin LTR ERV1 1 4944 -3455 726 166 137 22 chrY 22606007 22606278 -28907306 + Harlequin LTR ERV1 840 1141 -5755 * 2661 106 11 3 chrY 22606274 22606653 -28906931 + Harlequin LTR ERV1 7501 7882 -517 * 7213 125 17 27 chrY 22606648 22608222 -28905362 + pTR5 LTR ERV1 734 2009 -429 1316 222 24 24 chrY 22608477 22608770 -28904814 + AluJo SINE Alu 1 293 -19 182 33 67 0 chrY 22609786 22609816 -28903768 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 189 107 0 0 chrY 22610131 22610159 -28903425 + (A)n Simple_repeat Simple_repeat 1 28 0 330 355 61 37 chrY 22610389 22610603 -28902981 + L2 LINE L2 2569 2787 -527 211 288 114 30 chrY 22611491 22611623 -28901961 - MIR SINE MIR -11 251 109 585 269 17 21 chrY 22612290 22613374 -28900210 + BSR/Beta Satellite Satellite 1 1079 -6 1063 280 8 33 chrY 22613428 22613977 -28899607 + BSR/Beta Satellite Satellite 1 535 -37 2374 239 70 22 chrY 22614007 22615056 -28898528 - L1M3 LINE L1 -703 5480 4394 1859 234 20 8 chrY 22615053 22615548 -28898036 + L1M3 LINE L1 3905 4405 -1741 * 1031 199 11 6 chrY 22615708 22615884 -28897700 + MER61B LTR ERV1 1 177 -248 12479 178 30 16 chrY 22615928 22619651 -28893933 + MER61B-int LTR ERV1 1454 5217 0 1933 224 9 42 chrY 22619656 22620090 -28893494 + MER61B LTR ERV1 6 425 0 514 284 31 5 chrY 22620102 22620324 -28893260 - L1M4 LINE L1 -1277 5571 5344 1308 204 0 19 chrY 22620334 22620598 -28892986 + AluJb SINE Alu 11 269 -43 304 294 29 0 chrY 22620615 22620717 -28892867 - L1M4 LINE L1 -1498 5350 5246 378 353 17 4 chrY 22620746 22620981 -28892603 - L1M4 LINE L1 -3262 3586 3349 305 295 67 54 chrY 22620987 22621302 -28892282 - L1M4 LINE L1 -4765 2084 1766 182 214 0 14 chrY 22621327 22621397 -28892187 + T-rich Low_complexity Low_complexity 3 71 0 1621 141 53 42 chrY 22621787 22622070 -28891514 - AluSx SINE Alu -26 286 1 1613 251 15 62 chrY 22622977 22623443 -28890141 - LTR32 LTR ERVL -21 450 7 2870 10 0 0 chrY 22623826 22624158 -28889426 - AluYa5 SINE Alu 0 332 1 1767 164 0 11 chrY 22626897 22627178 -28886406 + AluSc SINE Alu 5 282 -27 309 109 0 0 chrY 22627178 22627224 -28886360 + (TAAG)n Simple_repeat Simple_repeat 2 47 0 1863 170 3 0 chrY 22628009 22628303 -28885281 - AluSq SINE Alu -18 295 1 23 33 0 0 chrY 22629470 22629500 -28884084 + AT_rich Low_complexity Low_complexity 1 30 0 4504 234 15 64 chrY 22629517 22630545 -28883039 + L1PA12 LINE L1 1 1078 -6503 603 40 0 0 chrY 22630545 22630619 -28882965 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 4504 234 15 64 chrY 22630619 22630662 -28882922 + L1PA12 LINE L1 1078 1122 -6459 1226 48 0 37 chrY 22630662 22630849 -28882735 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4504 234 15 64 chrY 22630849 22630904 -28882680 + L1PA12 LINE L1 1122 1178 -6403 1843 161 3 7 chrY 22630904 22631195 -28882389 - AluSp SINE Alu -21 292 3 4504 234 15 64 chrY 22631195 22631898 -28881686 + L1PA12 LINE L1 1178 2004 -5577 3379 270 164 32 chrY 22631896 22634378 -28879206 + L1PA13 LINE L1 339 3153 -3644 * 1798 179 0 0 chrY 22636191 22636487 -28877097 + AluSq SINE Alu 2 297 -16 4066 45 29 0 chrY 22636487 22636874 -28876710 + L1PA4 LINE L1 5612 6020 -152 189 0 0 0 chrY 22636874 22636895 -28876689 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 4066 45 29 0 chrY 22636895 22637053 -28876531 + L1PA4 LINE L1 6020 6172 0 234 29 0 29 chrY 22637018 22637224 -28876360 + (TAA)n Simple_repeat Simple_repeat 3 207 0 281 234 32 0 chrY 22637591 22637685 -28875899 + A-rich Low_complexity Low_complexity 4 100 0 354 329 27 14 chrY 22637754 22638046 -28875538 + L1M4c LINE L1 1370 1665 -4719 571 287 100 35 chrY 22638062 22638692 -28874892 + L1M4c LINE L1 2443 3113 -3269 1618 160 24 3 chrY 22638697 22638984 -28874600 - AluSc SINE Alu -16 293 1 520 281 46 23 chrY 22639014 22639316 -28874268 + L1 LINE L1 4524 4832 -1314 1132 277 14 9 chrY 22639327 22640454 -28873130 + BSR/Beta Satellite Satellite 1 1132 -59 602 275 13 19 chrY 22640519 22641596 -28871988 + BSR/Beta Satellite Satellite 1 1069 -6 1036 293 20 19 chrY 22641692 22642333 -28871251 + BSR/Beta Satellite Satellite 1 641 0 560 288 6 20 chrY 22642599 22643195 -28870389 + BSR/Beta Satellite Satellite 1 587 -34 413 243 48 0 chrY 22643609 22643712 -28869872 + BSR/Beta Satellite Satellite 1 108 -271 394 284 9 18 chrY 22643725 22643957 -28869627 + BSR/Beta Satellite Satellite 1 229 -6 992 293 14 22 chrY 22644053 22644609 -28868975 + BSR/Beta Satellite Satellite 1 551 -3 231 378 0 0 chrY 22644688 22644807 -28868777 + BSR/Beta Satellite Satellite 3 121 -21 508 284 19 22 chrY 22644940 22645659 -28867925 + BSR/Beta Satellite Satellite 1 716 -64 311 341 42 2 chrY 22645732 22645940 -28867644 + BSR/Beta Satellite Satellite 1 216 -7 1125 283 16 14 chrY 22645966 22646781 -28866803 + BSR/Beta Satellite Satellite 1 816 -44 1122 305 3 9 chrY 22646853 22647675 -28865909 + BSR/Beta Satellite Satellite 1 817 -35 611 281 10 18 chrY 22647720 22648639 -28864945 + BSR/Beta Satellite Satellite 1 912 -6 895 273 22 11 chrY 22648735 22649006 -28864578 + BSR/Beta Satellite Satellite 21 294 -85 522 204 4 49 chrY 22649115 22649295 -28864289 + BSR/Beta Satellite Satellite 1 171 -21 2091 239 71 19 chrY 22649302 22650327 -28863257 - L1M2 LINE L1 -743 5403 4400 301 250 9 17 chrY 22650331 22650447 -28863137 + L1 LINE L1 3905 4019 -2127 1222 184 37 7 chrY 22650481 22650752 -28862832 + MER61B-int LTR ERV1 3598 3876 -1341 4325 178 30 25 chrY 22650753 22651978 -28861606 + MER61B-int LTR ERV1 1629 5217 0 2052 218 17 9 chrY 22651978 22652400 -28861184 + MER61B LTR ERV1 1 425 0 426 294 19 9 chrY 22652425 22652639 -28860945 - L1 LINE L1 -1290 4856 4641 1180 242 3 46 chrY 22652650 22652935 -28860649 + AluJb SINE Alu 13 285 -27 478 296 6 6 chrY 22653115 22653291 -28860293 - L1MEd LINE L1 -3324 2805 2630 305 293 96 54 chrY 22653297 22653611 -28859973 - L1MEd LINE L1 -4984 1135 809 403 237 28 28 chrY 22653611 22653788 -28859796 + T-rich Low_complexity Low_complexity 2 178 0 1716 168 10 26 chrY 22654195 22654499 -28859085 - AluSx SINE Alu -11 301 3 2530 62 0 0 chrY 22654543 22654849 -28858735 + AluY SINE Alu 6 311 0 978 272 16 47 chrY 22655703 22656023 -28857561 - LTR32 LTR ERVL -1 470 161 732 63 0 0 chrY 22656026 22656121 -28857463 + AluY SINE Alu 6 100 -211 376 263 45 45 chrY 22656184 22656340 -28857244 - LTR32 LTR ERVL -301 170 15 489 62 0 0 chrY 22658047 22658112 -28855472 + (TG)n Simple_repeat Simple_repeat 2 66 0 1818 180 0 0 chrY 22659409 22659704 -28853880 + AluY SINE Alu 1 295 -16 2114 116 3 31 chrY 22661335 22661678 -28851906 + AluSp SINE Alu 1 334 0 1741 179 3 7 chrY 22661924 22662225 -28851359 - AluSc SINE Alu -9 300 1 5560 254 9 4 chrY 22662264 22663991 -28849593 + L1PA12 LINE L1 1 2004 -5577 3947 270 117 32 chrY 22663989 22665944 -28847640 + L1PA13 LINE L1 339 2127 -4670 * 5100 166 20 45 chrY 22665944 22667038 -28846546 - MER11C LTR ERVK -4 1067 1 3947 270 117 32 chrY 22667038 22667193 -28846391 + L1PA13 LINE L1 2127 2267 -4530 277 23 0 45 chrY 22667193 22667237 -28846347 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 3947 270 117 32 chrY 22667237 22667681 -28845903 + L1PA13 LINE L1 2267 3162 -3635 610 187 0 0 chrY 22669048 22669155 -28844429 + AluSq/x SINE Alu 1 107 -205 236 175 25 62 chrY 22669304 22669384 -28844200 + A-rich Low_complexity Low_complexity 3 79 0 397 309 39 25 chrY 22669450 22669735 -28843849 + L1M4c LINE L1 1370 1658 -4726 670 283 79 25 chrY 22669760 22670395 -28843189 + L1M4c LINE L1 2445 3110 -3272 703 175 54 60 chrY 22670396 22670562 -28843022 - AluSg/x SINE Alu -10 300 136 225 324 53 10 chrY 22670591 22670890 -28842694 + L1 LINE L1 4521 4832 -1314 531 266 9 29 chrY 22670903 22671221 -28842363 + BSR/Beta Satellite Satellite 1 311 -3 1112 285 12 19 chrY 22671254 22673182 -28840402 + BSR/Beta Satellite Satellite 1 1914 -13 960 286 16 12 chrY 22673285 22673922 -28839662 + BSR/Beta Satellite Satellite 1 639 0 435 272 23 34 chrY 22674009 22674798 -28838786 + BSR/Beta Satellite Satellite 1 780 -23 267 323 14 9 chrY 22674971 22675095 -28838489 + BSR/Beta Satellite Satellite 1 124 -14 842 256 62 17 chrY 22675188 22675955 -28837629 + BSR/Beta Satellite Satellite 1 801 -44 1121 294 10 3 chrY 22676025 22676629 -28836955 + BSR/Beta Satellite Satellite 1 608 -122 291 319 11 0 chrY 22676739 22676833 -28836751 + BSR/Beta Satellite Satellite 1 95 -47 548 285 24 13 chrY 22676974 22678094 -28835490 + BSR/Beta Satellite Satellite 1 1132 0 771 336 13 10 chrY 22678182 22678480 -28835104 + BSR/Beta Satellite Satellite 21 319 -60 579 243 21 43 chrY 22678527 22678742 -28834842 + BSR/Beta Satellite Satellite 1 210 0 326 373 0 0 chrY 22678818 22678936 -28834648 + BSR/Beta Satellite Satellite 4 121 -21 597 271 26 21 chrY 22679081 22679797 -28833787 + BSR/Beta Satellite Satellite 1 719 -68 275 334 27 15 chrY 22679863 22680005 -28833579 + BSR/Beta Satellite Satellite 2 264 -6 235 143 0 24 chrY 22680032 22680074 -28833510 + BSR/Beta Satellite Satellite 321 361 -18 1157 267 44 19 chrY 22680092 22681687 -28831897 + BSR/Beta Satellite Satellite 1 1634 -46 533 270 14 21 chrY 22681753 22682847 -28830737 + BSR/Beta Satellite Satellite 1 1086 -46 1106 309 25 18 chrY 22682912 22683671 -28829913 + BSR/Beta Satellite Satellite 1 764 -23 1074 262 16 34 chrY 22683743 22685631 -28827953 + BSR/Beta Satellite Satellite 1 1854 -6 1325 294 5 7 chrY 22685729 22686066 -28827518 + BSR/Beta Satellite Satellite 1 336 -6 594 247 4 38 chrY 22686142 22686402 -28827182 + BSR/Beta Satellite Satellite 1 251 -32 243 330 11 0 chrY 22686471 22686559 -28827025 + BSR/Beta Satellite Satellite 43 131 -11 627 261 11 30 chrY 22686625 22687235 -28826349 + BSR/Beta Satellite Satellite 1 598 -27 357 341 18 11 chrY 22687405 22687623 -28825961 + BSR/Beta Satellite Satellite 1 219 -7 1457 255 24 23 chrY 22687643 22688462 -28825122 + BSR/Beta Satellite Satellite 1 819 -43 1281 303 20 7 chrY 22688543 22689342 -28824242 + BSR/Beta Satellite Satellite 1 810 -35 189 178 0 0 chrY 22689346 22689391 -28824193 + A-rich Low_complexity Low_complexity 4 48 0 543 270 20 25 chrY 22689416 22690257 -28823327 + BSR/Beta Satellite Satellite 1 836 -42 1296 277 25 12 chrY 22690328 22692236 -28821348 + BSR/Beta Satellite Satellite 1 1932 -6 1399 257 0 0 chrY 22692343 22692639 -28820945 + BSR/Beta Satellite Satellite 35 330 -49 538 289 12 21 chrY 22692702 22693026 -28820558 + BSR/Beta Satellite Satellite 1 321 -10 561 275 13 44 chrY 22693184 22693945 -28819639 + BSR/Beta Satellite Satellite 1 737 -6 1349 290 16 20 chrY 22693999 22694703 -28818881 + BSR/Beta Satellite Satellite 1 701 0 738 265 24 27 chrY 22694747 22695672 -28817912 + BSR/Beta Satellite Satellite 1 922 -178 524 277 15 34 chrY 22695687 22695976 -28817608 + BSR/Beta Satellite Satellite 1 283 -43 553 266 25 33 chrY 22696293 22696991 -28816593 + BSR/Beta Satellite Satellite 1 692 -7 278 380 0 0 chrY 22697100 22697257 -28816327 + BSR/Beta Satellite Satellite 1 157 -1 1333 285 31 3 chrY 22697310 22697724 -28815860 + BSR/Beta Satellite Satellite 1 425 -12 541 264 15 8 chrY 22697849 22698174 -28815410 + BSR/Beta Satellite Satellite 1 327 -34 1238 261 26 41 chrY 22698244 22699867 -28813717 + BSR/Beta Satellite Satellite 1 1599 -27 301 304 11 11 chrY 22699881 22699973 -28813611 + BSR/Beta Satellite Satellite 5 96 -46 1086 273 9 19 chrY 22699988 22700310 -28813274 + BSR/Beta Satellite Satellite 45 363 -16 1023 304 3 3 chrY 22700326 22700786 -28812798 + BSR/Beta Satellite Satellite 1 460 -47 648 242 16 18 chrY 22700847 22701439 -28812145 + BSR/Beta Satellite Satellite 1 591 -44 2317 106 0 3 chrY 22701444 22701756 -28811828 - AluY SINE Alu 0 311 1 594 257 36 28 chrY 22701779 22702233 -28811351 + BSR/Beta Satellite Satellite 1 457 -6 1290 312 10 12 chrY 22702330 22702734 -28810850 + BSR/Beta Satellite Satellite 1 402 -10 469 307 9 35 chrY 22702745 22703165 -28810419 + BSR/Beta Satellite Satellite 1 409 -11 655 250 9 42 chrY 22703232 22703734 -28809850 + BSR/Beta Satellite Satellite 1 485 -4 258 295 49 16 chrY 22703809 22703931 -28809653 + BSR/Beta Satellite Satellite 1 126 -16 338 277 24 49 chrY 22704028 22704124 -28809460 + BSR/Beta Satellite Satellite 1 98 -431 1877 122 47 4 chrY 22704124 22704427 -28809157 + AluSq SINE Alu 1 313 0 338 277 24 49 chrY 22704427 22704541 -28809043 + BSR/Beta Satellite Satellite 98 500 -29 1142 299 14 11 chrY 22704566 22706117 -28807467 + BSR/Beta Satellite Satellite 1 1554 -64 633 259 15 26 chrY 22706177 22707178 -28806406 + BSR/Beta Satellite Satellite 1 990 -43 1303 304 15 18 chrY 22707310 22708014 -28805570 + BSR/Beta Satellite Satellite 1 701 0 609 261 10 24 chrY 22708202 22708837 -28804747 + BSR/Beta Satellite Satellite 1 626 -9 314 325 47 25 chrY 22708956 22709209 -28804375 + BSR/Beta Satellite Satellite 1 258 -4 260 222 0 19 chrY 22709227 22709281 -28804303 + BSR/Beta Satellite Satellite 1 53 -326 2269 208 27 29 chrY 22709299 22709818 -28803766 - LTR22 LTR ERVK -62 518 1 468 281 12 7 chrY 22709818 22710000 -28803584 + BSR/Beta Satellite Satellite 1 182 0 1268 287 15 11 chrY 22710046 22711253 -28802331 + BSR/Beta Satellite Satellite 1 1211 -53 620 226 16 20 chrY 22711315 22711549 -28802035 + BSR/Beta Satellite Satellite 1 232 -51 618 245 20 11 chrY 22711595 22712264 -28801320 + BSR/Beta Satellite Satellite 1 675 -6 1419 268 15 26 chrY 22712367 22713861 -28799723 + BSR/Beta Satellite Satellite 1 1477 -37 235 281 0 0 chrY 22713898 22713962 -28799622 + BSR/Beta Satellite Satellite 15 78 -64 386 292 32 8 chrY 22714010 22714162 -28799422 + BSR/Beta Satellite Satellite 1 155 -15 1009 289 17 2 chrY 22714309 22714679 -28798905 + BSR/Beta Satellite Satellite 1 375 0 678 270 5 27 chrY 22714738 22715089 -28798495 + BSR/Beta Satellite Satellite 1 343 -30 970 311 23 12 chrY 22715160 22715819 -28797765 + BSR/Beta Satellite Satellite 1 666 -49 382 263 6 6 chrY 22715831 22715963 -28797621 + BSR/Beta Satellite Satellite 1 132 -35 653 257 10 26 chrY 22716012 22717092 -28796492 + BSR/Beta Satellite Satellite 1 1062 -6 740 272 10 96 chrY 22717214 22717399 -28796185 + BSR/Beta Satellite Satellite 46 196 -183 1744 159 0 4 chrY 22717399 22717706 -28795878 - AluSc SINE Alu 0 308 3 740 272 10 96 chrY 22717706 22717831 -28795753 + BSR/Beta Satellite Satellite 196 330 -49 583 291 11 27 chrY 22717894 22718296 -28795288 + BSR/Beta Satellite Satellite 1 395 -1 610 278 7 24 chrY 22718338 22719037 -28794547 + BSR/Beta Satellite Satellite 1 687 -21 374 357 14 0 chrY 22719122 22719291 -28794293 + BSR/Beta Satellite Satellite 1 171 -6 1339 270 23 10 chrY 22719364 22721081 -28792503 + BSR/Beta Satellite Satellite 1 1739 -12 679 263 17 30 chrY 22721200 22722542 -28791042 + BSR/Beta Satellite Satellite 1 1325 0 300 305 40 33 chrY 22722776 22722975 -28790609 + BSR/Beta Satellite Satellite 1 200 -7 1184 274 20 24 chrY 22722988 22724280 -28789304 + BSR/Beta Satellite Satellite 1 1286 -13 1025 299 13 2 chrY 22724296 22724759 -28788825 + BSR/Beta Satellite Satellite 1 468 -35 670 244 33 6 chrY 22724776 22724964 -28788620 + BSR/Beta Satellite Satellite 1 193 -46 569 259 11 40 chrY 22724977 22725658 -28787926 + BSR/Beta Satellite Satellite 1 661 -5 1105 265 24 21 chrY 22725693 22726021 -28787563 + BSR/Beta Satellite Satellite 35 363 -16 585 319 0 2 chrY 22726079 22726390 -28787194 + BSR/Beta Satellite Satellite 1 310 -47 561 265 20 21 chrY 22726451 22727509 -28786075 + BSR/Beta Satellite Satellite 1 1056 -7 1360 281 9 12 chrY 22727604 22728186 -28785398 + BSR/Beta Satellite Satellite 1 580 -45 294 321 28 0 chrY 22728376 22728485 -28785099 + BSR/Beta Satellite Satellite 37 148 -4 548 279 4 34 chrY 22728502 22729066 -28784518 + BSR/Beta Satellite Satellite 1 547 -2 368 331 23 0 chrY 22729274 22729407 -28784177 + BSR/Beta Satellite Satellite 2 137 -15 737 282 66 33 chrY 22729441 22729928 -28783656 + BSR/Beta Satellite Satellite 1 503 0 401 273 0 72 chrY 22729941 22730080 -28783504 + BSR/Beta Satellite Satellite 14 142 0 * 700 247 19 10 chrY 22729980 22730390 -28783194 + BSR/Beta Satellite Satellite 1 413 -46 1132 312 16 4 chrY 22730404 22731063 -28782521 + BSR/Beta Satellite Satellite 1 666 -49 546 273 14 23 chrY 22731079 22731901 -28781683 + BSR/Beta Satellite Satellite 1 814 -3 512 303 12 22 chrY 22731912 22732193 -28781391 + BSR/Beta Satellite Satellite 1 278 0 637 324 22 22 chrY 22732283 22732561 -28781023 + BSR/Beta Satellite Satellite 21 298 -81 8955 184 16 14 chrY 22732563 22735167 -28778417 + MER61B-int LTR ERV1 2141 4818 -399 855 70 0 0 chrY 22735169 22735284 -28778300 + (TTTC)n Simple_repeat Simple_repeat 1 115 0 1679 201 18 18 chrY 22735286 22735629 -28777955 + MER61B-int LTR ERV1 4875 5217 0 2017 194 23 44 chrY 22735629 22736063 -28777521 + MER61B LTR ERV1 1 425 0 463 263 45 20 chrY 22736070 22736268 -28777316 - L1M4 LINE L1 -1272 4874 4672 1311 232 4 4 chrY 22736321 22736593 -28776991 + AluJb SINE Alu 14 285 -27 240 59 0 0 chrY 22736620 22736654 -28776930 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2725 200 23 24 chrY 22736749 22737325 -28776259 - LTR22 LTR ERVK -3 577 3 5174 194 45 31 chrY 22737327 22738000 -28775584 - HERVK22 LTR ERVK 0 6837 6175 3494 32 0 0 chrY 22738000 22738407 -28775177 - L1PA3 LINE L1 -1 6154 5748 5174 194 45 31 chrY 22738407 22740207 -28773377 - HERVK22 LTR ERVK -662 6175 2027 562 252 58 0 chrY 22740202 22740341 -28773243 - HERVK22 LTR ERVK -4364 2473 2327 * 2012 219 36 0 chrY 22740736 22741129 -28772455 - HERVK22 LTR ERVK -6142 695 289 641 168 10 0 chrY 22741139 22741240 -28772344 - LTR12 LTR ERV1 0 714 613 305 256 11 0 chrY 22741240 22741330 -28772254 - LTR30 LTR ERV1 -79 643 553 1505 143 118 9 chrY 22741331 22741709 -28771875 - LTR12 LTR ERV1 -406 2032 1 6301 115 6 0 chrY 22741709 22742598 -28770986 - HERV9 LTR ERV1 0 8399 7506 810 103 291 0 chrY 22742603 22742837 -28770747 - Harlequin LTR ERV1 -5755 1141 840 27407 113 14 9 chrY 22742838 22745189 -28768395 - Harlequin LTR ERV1 -1994 444 2483 2745 7 0 0 chrY 22745189 22745480 -28768104 - AluYa5 SINE Alu -20 291 1 27407 113 14 9 chrY 22745480 22747935 -28765649 - Harlequin LTR ERV1 46 2484 43 4117 118 106 86 chrY 22747936 22748746 -28764838 - LTR12 LTR ERV1 0 826 1 1385 126 0 10 chrY 22748751 22748958 -28764626 - HERVK22 LTR ERVK -6560 277 73 1841 158 3 0 chrY 22849971 22850255 -28663329 + AluSq SINE Alu 11 295 -18 309 109 0 0 chrY 22851040 22851086 -28662498 + (CTTA)n Simple_repeat Simple_repeat 2 47 0 1743 164 0 11 chrY 22851086 22851367 -28662217 - AluSc SINE Alu -27 282 5 2871 10 0 0 chrY 22854106 22854437 -28659147 + AluYa5 SINE Alu 1 331 0 1613 251 15 62 chrY 22854822 22855288 -28658296 + LTR32 LTR ERVL 7 450 -21 1621 141 53 42 chrY 22856195 22856478 -28657106 + AluSx SINE Alu 1 286 -26 182 214 0 14 chrY 22856868 22856938 -28656646 + A-rich Low_complexity Low_complexity 3 71 0 305 295 67 54 chrY 22856963 22857278 -28656306 + L1M4 LINE L1 1766 2084 -4765 378 353 17 4 chrY 22857284 22857519 -28656065 + L1M4 LINE L1 3349 3586 -3262 304 294 29 0 chrY 22857548 22857650 -28655934 + L1M4 LINE L1 5246 5350 -1498 1308 204 0 19 chrY 22857667 22857931 -28655653 - AluJb SINE Alu -43 269 11 514 284 31 5 chrY 22857941 22858163 -28655421 + L1M4 LINE L1 5344 5571 -1277 1933 224 9 42 chrY 22858175 22858609 -28654975 - MER61B LTR ERV1 0 425 6 12444 178 30 16 chrY 22858614 22862337 -28651247 - MER61B-int LTR ERV1 0 5217 1454 1031 199 11 6 chrY 22862381 22862557 -28651027 - MER61B LTR ERV1 -248 177 1 1859 234 20 8 chrY 22862717 22863212 -28650372 - L1M3 LINE L1 -1741 4405 3905 * 2374 239 70 22 chrY 22863209 22864258 -28649326 + L1M3 LINE L1 4394 5480 -703 1063 290 9 30 chrY 22864288 22864837 -28648747 - BSR/Beta Satellite Satellite -25 537 1 585 268 14 24 chrY 22864891 22865975 -28647609 - BSR/Beta Satellite Satellite -2 1072 1 211 288 114 30 chrY 22866642 22866774 -28646810 + MIR SINE MIR 109 251 -11 330 355 61 37 chrY 22867662 22867876 -28645708 - L2 LINE L2 -527 2787 2569 189 107 0 0 chrY 22868106 22868134 -28645450 + (T)n Simple_repeat Simple_repeat 1 28 0 182 33 67 0 chrY 22868449 22868479 -28645105 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1316 222 24 24 chrY 22869495 22869788 -28643796 - AluJo SINE Alu -19 293 1 7213 125 17 27 chrY 22870043 22871617 -28641967 - pTR5 LTR ERV1 -429 2009 734 2661 106 11 3 chrY 22871612 22871991 -28641593 - Harlequin LTR ERV1 -517 7882 7501 * 726 166 137 22 chrY 22871987 22872258 -28641326 - Harlequin LTR ERV1 -5755 1141 840 * 36407 95 6 7 chrY 22872259 22877206 -28636378 - Harlequin LTR ERV1 -3455 4944 1 5310 146 92 91 chrY 22877209 22879032 -28634552 - pTR5 LTR ERV1 0 2438 743 1692 241 23 24 chrY 22879038 22879264 -28634320 - MER119 DNA MER1_type 0 583 358 2299 85 0 31 chrY 22879264 22879583 -28634001 - AluY SINE Alu -2 309 1 1692 241 23 24 chrY 22879583 22879888 -28633696 - MER119 DNA MER1_type -225 358 1 294 212 0 0 chrY 22880584 22880650 -28632934 + MER116 DNA Mariner 9 74 -6 271 227 27 27 chrY 22881318 22881393 -28632191 + MIR SINE MIR 57 131 -131 613 228 7 16 chrY 22882491 22882647 -28630937 + MIR SINE MIR 46 203 -59 273 268 94 55 chrY 22882720 22882847 -28630737 - L3 LINE CR1 -23 1554 1423 1197 279 66 16 chrY 22883795 22884294 -28629290 + MLT1L LTR MaLR 1 524 -91 737 205 187 0 chrY 22884314 22884480 -28629104 + MIR SINE MIR 29 225 -37 2162 185 43 19 chrY 22884610 22885139 -28628445 + L1MB4 LINE L1 5285 5826 -354 685 184 16 40 chrY 22885432 22885557 -28628027 + FLAM_A SINE Alu 1 122 -11 198 0 0 0 chrY 22886805 22886827 -28626757 + (T)n Simple_repeat Simple_repeat 1 22 0 212 336 80 8 chrY 22887069 22887194 -28626390 + MIR SINE MIR 53 186 -76 868 195 0 24 chrY 22887211 22887375 -28626209 + AluJo SINE Alu 3 162 -150 1198 73 0 11 chrY 22887443 22887620 -28625964 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 327 283 20 0 chrY 22888444 22888548 -28625036 + MIR SINE MIR 38 149 -59 304 246 167 26 chrY 22888741 22888855 -28624729 - L2 LINE L2 -4 3309 3180 524 241 0 6 chrY 22888863 22889033 -28624551 + GA-rich Low_complexity Low_complexity 1 169 0 325 236 123 0 chrY 22889035 22889141 -28624443 - MER63 DNA MER1_type -91 745 1 520 272 64 53 chrY 22889157 22889440 -28624144 - L2 LINE L2 -557 2757 2472 237 290 29 14 chrY 22889436 22889505 -28624079 - L2 LINE L2 -66 3206 3137 * 308 196 65 22 chrY 22890083 22890175 -28623409 + MLT1H LTR MaLR 66 161 -388 325 232 7 94 chrY 22890292 22890430 -28623154 + MLT1H LTR MaLR 424 549 0 276 111 95 16 chrY 22890547 22890610 -28622974 + LTR8A LTR ERV1 1 68 -659 262 288 0 0 chrY 22890617 22890683 -28622901 + MER50 LTR ERV1 12 77 -657 1780 185 3 0 chrY 22890735 22891032 -28622552 + AluJb SINE Alu 6 303 -9 3777 149 58 5 chrY 22891037 22891709 -28621875 + MER50 LTR ERV1 1 708 -26 332 59 0 0 chrY 22891709 22891760 -28621824 + L1MB4 LINE L1 6129 6179 -1 1391 198 46 82 chrY 22891768 22892329 -28621255 + L1MEc LINE L1 1849 2389 -4007 489 161 21 0 chrY 22892348 22892441 -28621143 - AluS SINE Alu -218 95 1 546 242 114 49 chrY 22892537 22892801 -28620783 + MER76 LTR ERV 28 308 -380 870 189 0 0 chrY 22892833 22893013 -28620571 + CT-rich Low_complexity Low_complexity 1 180 0 206 396 61 24 chrY 22894839 22895003 -28618581 + L3 LINE CR1 1117 1286 -291 251 371 51 40 chrY 22897188 22897363 -28616221 + L3 LINE CR1 1109 1285 -292 233 366 64 29 chrY 22899574 22899746 -28613838 + L3 LINE CR1 1109 1286 -291 183 80 0 0 chrY 22900207 22900232 -28613352 + (A)n Simple_repeat Simple_repeat 1 25 0 11516 70 12 5 chrY 22903946 22905600 -28607984 - L1P LINE L1 -4480 1666 1 1454 164 107 0 chrY 22908188 22908451 -28605133 + AluJb SINE Alu 6 296 -16 846 223 175 13 chrY 22908452 22908766 -28604818 - MLT1J2 LTR MaLR -62 388 24 267 332 87 5 chrY 22908974 22909182 -28604402 + L1MC/D LINE L1 5534 5758 -2050 279 0 0 0 chrY 22909348 22909379 -28604205 + (CA)n Simple_repeat Simple_repeat 2 32 0 306 23 45 0 chrY 22909394 22909438 -28604146 + (TG)n Simple_repeat Simple_repeat 1 46 0 309 51 0 0 chrY 22910140 22910179 -28603405 + (TG)n Simple_repeat Simple_repeat 2 40 0 411 300 258 0 chrY 22910628 22910895 -28602689 + L3 LINE CR1 1053 1388 -189 2475 152 79 96 chrY 22911047 22911765 -28601819 + L1MB7 LINE L1 5474 6179 -5 251 304 0 0 chrY 22911791 22911893 -28601691 + L1MC5 LINE L1 7341 7442 -519 213 217 50 17 chrY 22912464 22912524 -28601060 - MIR SINE MIR -57 205 144 364 223 107 29 chrY 22912591 22912694 -28600890 - MIR SINE MIR -106 156 46 189 263 74 63 chrY 22913939 22914034 -28599550 - L2 LINE L2 -187 3085 2990 294 289 211 26 chrY 22914558 22914714 -28598870 + MIR3 SINE MIR 2 186 -22 21 0 0 0 chrY 22914914 22914935 -28598649 + AT_rich Low_complexity Low_complexity 1 21 0 2056 128 0 14 chrY 22917657 22917975 -28595609 + AluSq SINE Alu 2 313 0 518 170 30 10 chrY 22918473 22918573 -28595011 + Tigger3b DNA MER2_type 1 102 -1129 2351 91 0 19 chrY 22918579 22918888 -28594696 - AluY SINE Alu -8 303 1 5063 116 69 9 chrY 22918895 22919797 -28593787 + Tigger3b DNA MER2_type 274 1229 -2 356 253 0 0 chrY 22919799 22919878 -28593706 - MIR SINE MIR -114 148 70 25 0 0 0 chrY 22920588 22920613 -28592971 + AT_rich Low_complexity Low_complexity 1 25 0 293 320 158 25 chrY 22920723 22920873 -28592711 + MIR SINE MIR 32 217 -45 333 0 0 0 chrY 22920873 22920910 -28592674 + (CA)n Simple_repeat Simple_repeat 2 38 0 293 320 158 25 chrY 22920910 22920962 -28592622 + MIR SINE MIR 217 261 -1 3644 219 96 12 chrY 22921294 22922323 -28591261 + L1MC4 LINE L1 6459 7574 -468 1240 218 48 0 chrY 22922323 22922443 -28591141 + AluJo SINE Alu 1 114 -198 293 0 0 26 chrY 22922443 22922481 -28591103 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1240 218 48 0 chrY 22922481 22922612 -28590972 + AluJo SINE Alu 114 264 -48 216 0 0 0 chrY 22922612 22922636 -28590948 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 2208 95 3 0 chrY 22922771 22923054 -28590530 + AluSp SINE Alu 17 300 -13 233 209 75 0 chrY 22923068 22923135 -28590449 + L1MC4 LINE L1 7965 8036 -6 320 193 79 35 chrY 22923300 22923414 -28590170 - MER112 DNA MER1_type -20 240 122 4481 99 19 0 chrY 22923436 22924059 -28589525 + MER41B LTR ERV1 1 635 0 22 0 0 0 chrY 22924335 22924357 -28589227 + AT_rich Low_complexity Low_complexity 1 22 0 235 318 55 0 chrY 22924369 22924479 -28589105 - L2 LINE L2 -1 3312 3197 421 280 96 17 chrY 22925583 22925755 -28587829 + MER20B DNA MER1_type 16 202 -17 21 57 0 0 chrY 22926081 22926116 -28587468 + AT_rich Low_complexity Low_complexity 1 35 0 218 70 70 0 chrY 22927153 22927196 -28586388 + A-rich Low_complexity Low_complexity 2 47 0 334 288 27 62 chrY 22928106 22928398 -28585186 - L1MEc LINE L1 -2526 3603 3322 717 244 72 23 chrY 22928742 22929090 -28584494 - L1MEc LINE L1 -2907 3222 2858 3251 241 168 63 chrY 22929134 22929918 -28583666 + L2 LINE L2 811 1512 -1801 2026 113 14 14 chrY 22929918 22930211 -28583373 + AluSx SINE Alu 1 293 -19 3251 241 168 63 chrY 22930211 22930727 -28582857 + L2 LINE L2 1512 1973 -1340 2090 122 3 10 chrY 22930727 22931031 -28582553 + AluSx SINE Alu 1 302 -10 3408 93 6 8 chrY 22931041 22931533 -28582051 + L1PB1 LINE L1 5659 6149 -2 3251 241 168 63 chrY 22931533 22931906 -28581678 + L2 LINE L2 1981 2314 -999 2336 98 0 0 chrY 22931906 22932202 -28581382 + AluSg SINE Alu 5 300 -10 3251 241 168 63 chrY 22932202 22932782 -28580802 + L2 LINE L2 2314 3313 0 345 265 44 6 chrY 22932828 22933009 -28580575 - L1MEc LINE L1 -3487 2642 2455 26 50 0 0 chrY 22933470 22933510 -28580074 + AT_rich Low_complexity Low_complexity 1 40 0 631 331 74 23 chrY 22933639 22934029 -28579555 - L1MEc LINE L1 -4605 1705 1296 293 223 71 93 chrY 22934043 22934366 -28579218 - L1MEc LINE L1 -4886 1233 918 22 35 0 0 chrY 22935079 22935108 -28578476 + AT_rich Low_complexity Low_complexity 1 29 0 560 330 37 21 chrY 22935577 22935765 -28577819 + MIR3 SINE MIR 12 202 -6 1939 155 0 23 chrY 22936337 22936646 -28576938 + AluSx SINE Alu 1 302 -10 346 252 162 26 chrY 22937185 22937451 -28576133 - L1ME4a LINE L1 -31 6090 5789 293 260 10 10 chrY 22937504 22937600 -28575984 - L1ME4a LINE L1 -315 5806 5711 247 164 269 0 chrY 22937615 22937682 -28575902 + L2 LINE L2 3225 3309 -4 342 284 54 64 chrY 22937854 22937974 -28575610 - L1ME4a LINE L1 -566 5555 5436 2130 122 0 0 chrY 22937974 22938270 -28575314 + AluSx SINE Alu 1 296 -16 342 284 54 64 chrY 22938270 22938353 -28575231 - L1ME4a LINE L1 -685 5436 5354 863 236 74 0 chrY 22939708 22939924 -28573660 - MIR SINE MIR -8 254 23 1650 166 36 26 chrY 22940029 22940337 -28573247 + AluJb SINE Alu 1 311 -1 3782 82 8 0 chrY 22940591 22941101 -28572483 - L1PA14 LINE L1 -10 6151 5638 2943 126 42 7 chrY 22941101 22941784 -28571800 + L1P4 LINE L1 4791 5506 -655 257 48 48 0 chrY 22941784 22941826 -28571758 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2943 126 42 7 chrY 22941826 22941937 -28571647 + L1P4 LINE L1 5506 5612 -549 641 306 14 9 chrY 22942271 22942493 -28571091 + L2 LINE L2 2196 2418 -896 293 326 66 94 chrY 22942593 22942609 -28570975 - L2 LINE L2 -73 3199 3184 1892 148 3 0 chrY 22942609 22942892 -28570692 + AluSq SINE Alu 1 284 -29 293 326 66 94 chrY 22942892 22943163 -28570421 - L2 LINE L2 -88 3184 2920 641 268 34 55 chrY 22943204 22943439 -28570145 - MIR SINE MIR -13 249 20 712 311 38 13 chrY 22943715 22943953 -28569631 + L2 LINE L2 2090 2333 -981 774 157 0 0 chrY 22943980 22944095 -28569489 + AluSp/q SINE Alu 175 289 -24 2599 87 5 33 chrY 22944095 22944358 -28569226 + L1PB2 LINE L1 5769 6019 -132 2322 85 0 3 chrY 22944358 22944651 -28568933 + AluY SINE Alu 2 293 -18 2599 87 5 33 chrY 22944651 22944777 -28568807 + L1PB2 LINE L1 6019 6147 -4 200 187 22 44 chrY 22944814 22944905 -28568679 + (TTATA)n Simple_repeat Simple_repeat 1 89 0 202 110 22 66 chrY 22944908 22944999 -28568585 + (TATAA)n Simple_repeat Simple_repeat 3 89 0 496 241 52 9 chrY 22945072 22945188 -28568396 + L2 LINE L2 3192 3312 -1 221 261 70 108 chrY 22945414 22945571 -28568013 - MER5A DNA MER1_type -9 180 30 1190 174 9 27 chrY 22946753 22946977 -28566607 + MER58A DNA MER1_type 1 220 -4 734 274 114 19 chrY 22948369 22949019 -28564565 - MER20B DNA MER1_type -31 752 1 890 208 73 0 chrY 22950974 22951166 -28562418 - MIR SINE MIR -56 206 1 382 255 55 48 chrY 22951234 22951379 -28562205 + MIR3 SINE MIR 63 208 0 1955 124 10 14 chrY 22951465 22951756 -28561828 - AluSg SINE Alu -20 290 1 2588 248 95 38 chrY 22952199 22953370 -28560214 + L2 LINE L2 2072 3308 -5 207 238 0 0 chrY 22954153 22954195 -28559389 + MIR SINE MIR 103 144 -118 3398 144 43 0 chrY 22955003 22955601 -28557983 - L1MA5 LINE L1 -4 6296 5673 231 114 0 0 chrY 22955602 22955646 -28557938 + (GA)n Simple_repeat Simple_repeat 2 45 0 240 105 0 0 chrY 22955659 22955697 -28557887 - tRNA-Glu-GAG tRNA tRNA -37 38 1 1645 114 11 11 chrY 22955702 22955974 -28557610 - L1MA5 LINE L1 -618 5682 5411 2084 145 0 0 chrY 22956308 22956605 -28556979 + AluJb SINE Alu 1 297 -15 369 193 0 13 chrY 22956632 22956720 -28556864 - L1ME2 LINE L1 -153 6011 5926 647 200 35 0 chrY 22956720 22956865 -28556719 + L1ME2 LINE L1 6015 6164 0 252 0 0 0 chrY 22959292 22959320 -28554264 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 23 33 0 0 chrY 22959371 22959401 -28554183 + AT_rich Low_complexity Low_complexity 1 30 0 331 245 31 41 chrY 22959901 22959999 -28553585 - L2 LINE L2 -1 3271 3175 812 119 0 0 chrY 22961102 22961211 -28552373 - AluSg/x SINE Alu -12 297 189 746 273 65 14 chrY 22961399 22961615 -28551969 + MIR SINE MIR 32 258 -4 501 246 8 8 chrY 22961705 22961835 -28551749 + MER94 DNA DNA 5 134 0 1138 224 27 0 chrY 22961969 22962192 -28551392 + MIR SINE MIR 12 240 -22 180 440 0 0 chrY 22963863 22963963 -28549621 - L2 LINE L2 -449 2865 2766 233 226 54 131 chrY 22964261 22964345 -28549239 - L2 LINE L2 0 3313 3224 3752 133 60 13 chrY 22964345 22964381 -28549203 + L1MB3 LINE L1 5450 5483 -700 1924 141 4 0 chrY 22964381 22964650 -28548934 + AluSq SINE Alu 1 270 -43 180 0 0 0 chrY 22964651 22964671 -28548913 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3752 133 60 13 chrY 22964671 22965333 -28548251 + L1MB3 LINE L1 5482 6183 0 233 226 54 131 chrY 22965333 22965416 -28548168 - L2 LINE L2 -89 3224 3159 196 322 47 40 chrY 22965512 22965661 -28547923 + L2 LINE L2 1948 2097 -1217 204 309 27 121 chrY 22965692 22965915 -28547669 + L2 LINE L2 2553 2754 -560 2842 136 95 9 chrY 22965932 22966490 -28547094 - L1MB7 LINE L1 -9 6175 5570 1725 158 13 51 chrY 22966732 22967048 -28546536 - AluSx SINE Alu -8 304 1 180 77 0 0 chrY 22967048 22967074 -28546510 + (TG)n Simple_repeat Simple_repeat 2 27 0 38188 45 2 2 chrY 22967120 22972064 -28541520 + L1P LINE L1 8 4948 -1198 1436 168 10 43 chrY 22972409 22972856 -28540728 + MER44D DNA MER2_type 8 569 -1918 2176 122 10 0 chrY 22972856 22973160 -28540424 + AluSq SINE Alu 7 313 0 1436 168 10 43 chrY 22973160 22973196 -28540388 + MER44D DNA MER2_type 569 605 0 1674 265 58 46 chrY 22973221 22973945 -28539639 - L1M4 LINE L1 -1918 4228 3490 1881 166 3 10 chrY 22973945 22974246 -28539338 - AluJo SINE Alu -13 299 1 1674 265 58 46 chrY 22974246 22974394 -28539190 - L1M4 LINE L1 -2656 3490 3345 638 161 62 31 chrY 22974425 22974587 -28538997 - Charlie1 DNA MER1_type 0 2761 2595 1737 180 0 0 chrY 22974589 22974901 -28538683 + AluJb SINE Alu 1 312 0 1246 289 33 102 chrY 22974920 22975635 -28537949 + L1M2c LINE L1 373 1409 -6157 1636 247 55 18 chrY 22975918 22977047 -28536537 + L1M2c LINE L1 2790 3959 -3606 823 213 134 24 chrY 22977047 22977301 -28536283 + LTR10A LTR ERV1 1 282 -327 581 108 0 0 chrY 22977341 22977443 -28536141 - BaEV-int LTR ERV1 -4935 1714 1613 432 139 0 14 chrY 22977444 22977516 -28536068 + AluS SINE Alu 225 295 -14 5046 156 21 22 chrY 22977520 22979196 -28534388 + L1MA6 LINE L1 4615 6293 -7 2990 162 86 44 chrY 22979208 22979540 -28534044 - Charlie1 DNA MER1_type -157 2604 2287 2006 121 32 63 chrY 22979540 22979888 -28533696 + MER1B DNA MER1_type 1 337 0 2990 162 86 44 chrY 22979888 22980365 -28533219 - Charlie1 DNA MER1_type -474 2287 1761 428 268 128 33 chrY 22980373 22980830 -28532754 - L1MCc LINE L1 -4935 1488 1277 966 179 50 17 chrY 22980897 22981076 -28532508 - MER5A DNA MER1_type -1 188 4 301 237 42 25 chrY 22981374 22981492 -28532092 - L1MCc LINE L1 -5901 1030 911 312 259 43 43 chrY 22982047 22982186 -28531398 - L1ME4a LINE L1 -57 6064 5926 23 33 0 0 chrY 22982260 22982290 -28531294 + AT_rich Low_complexity Low_complexity 1 30 0 527 164 18 9 chrY 22982489 22982657 -28530927 + MER58A DNA MER1_type 5 223 -1 742 214 0 7 chrY 22983105 22983245 -28530339 + FRAM SINE Alu 37 175 -1 544 286 43 73 chrY 22983345 22983579 -28530005 + MIR SINE MIR 4 230 -32 2056 106 10 7 chrY 22984107 22984400 -28529184 - AluSx SINE Alu -18 294 1 34 84 0 0 chrY 22984400 22984483 -28529101 + AT_rich Low_complexity Low_complexity 1 83 0 2141 118 0 16 chrY 22984581 22984885 -28528699 - AluSx SINE Alu -13 299 1 201 340 75 0 chrY 22985116 22985222 -28528362 - MIR SINE MIR -63 145 32 534 311 44 0 chrY 22985654 22985789 -28527795 + MIR3 SINE MIR 47 187 -21 930 181 121 0 chrY 22985914 22986096 -28527488 + MER3 DNA MER1_type 6 209 0 1804 143 38 7 chrY 22986218 22986505 -28527079 + AluSx SINE Alu 1 296 -16 204 206 0 0 chrY 22987040 22987074 -28526510 + polypurine Low_complexity Low_complexity 3 36 0 614 209 147 0 chrY 22987793 22987922 -28525662 - MER58B DNA MER1_type -2 339 192 632 211 0 9 chrY 22987927 22988041 -28525543 + MER58B DNA MER1_type 229 341 0 282 183 85 12 chrY 22988492 22988574 -28525010 + L1ME LINE L1 5731 5818 -303 578 270 74 69 chrY 22988619 22989186 -28524398 + L1ME4a LINE L1 5258 5827 -337 1753 163 12 38 chrY 22989500 22989819 -28523765 - AluJo SINE Alu -1 311 1 251 235 29 0 chrY 22989870 22989938 -28523646 + L1ME4a LINE L1 5982 6051 -70 531 209 111 52 chrY 22990751 22990923 -28522661 - L1ME1 LINE L1 -5 6161 5980 557 113 183 9 chrY 22990932 22991047 -28522537 - L1PA13 LINE L1 -3 6160 6026 1962 108 75 4 chrY 22991473 22991752 -28521832 - AluSx SINE Alu -13 299 1 3442 60 0 7 chrY 22991959 22992411 -28521173 + L1P LINE L1 4917 5365 -781 2819 16 0 3 chrY 22992411 22992723 -28520861 + AluYa5 SINE Alu 1 311 0 1613 251 15 62 chrY 22993115 22993581 -28520003 + LTR32 LTR ERVL 7 450 -21 1621 141 53 42 chrY 22994488 22994771 -28518813 + AluSx SINE Alu 1 286 -26 191 194 0 39 chrY 22995161 22995264 -28518320 + A-rich Low_complexity Low_complexity 3 101 0 313 289 108 39 chrY 22995329 22995561 -28518023 + L1ME LINE L1 769 1016 -5054 378 353 17 4 chrY 22995577 22995812 -28517772 + L1ME LINE L1 2581 2818 -3262 304 294 29 0 chrY 22995841 22995943 -28517641 + L1M4 LINE L1 4544 4648 -1498 1308 204 0 19 chrY 22995960 22996224 -28517360 - AluJb SINE Alu -43 269 11 514 284 31 5 chrY 22996234 22996456 -28517128 + L1M4 LINE L1 4642 4869 -1277 1934 224 9 42 chrY 22996468 22996902 -28516682 - MER61B LTR ERV1 0 425 6 12493 177 30 16 chrY 22996907 23000630 -28512954 - MER61B-int LTR ERV1 0 5217 1454 1031 199 11 6 chrY 23000674 23000850 -28512734 - MER61B LTR ERV1 -248 177 1 1844 234 20 8 chrY 23001010 23001505 -28512079 - L1M3 LINE L1 -1741 4405 3905 * 2374 239 70 22 chrY 23001502 23002551 -28511033 + L1M3 LINE L1 4394 5480 -703 1063 290 9 30 chrY 23002581 23003130 -28510454 - BSR/Beta Satellite Satellite -25 537 1 585 268 14 24 chrY 23003184 23004268 -28509316 - BSR/Beta Satellite Satellite -2 1072 1 211 288 114 30 chrY 23004935 23005067 -28508517 + MIR SINE MIR 109 251 -11 330 355 61 37 chrY 23005955 23006169 -28507415 - L2 LINE L2 -527 2787 2569 189 107 0 0 chrY 23006399 23006427 -28507157 + (T)n Simple_repeat Simple_repeat 1 28 0 182 33 67 0 chrY 23006742 23006772 -28506812 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1316 222 24 24 chrY 23007788 23008081 -28505503 - AluJo SINE Alu -19 293 1 7213 125 17 27 chrY 23008336 23009910 -28503674 - pTR5 LTR ERV1 -429 2009 734 2661 106 11 3 chrY 23009905 23010284 -28503300 - Harlequin LTR ERV1 -517 7882 7501 * 726 166 137 22 chrY 23010280 23010551 -28503033 - Harlequin LTR ERV1 -5755 1141 840 * 36407 95 6 7 chrY 23010552 23015499 -28498085 - Harlequin LTR ERV1 -3455 4944 1 5331 146 92 91 chrY 23015502 23017325 -28496259 - pTR5 LTR ERV1 0 2438 743 1692 241 23 24 chrY 23017331 23017557 -28496027 - MER119 DNA MER1_type 0 583 358 2299 85 0 31 chrY 23017557 23017876 -28495708 - AluY SINE Alu -2 309 1 1692 241 23 24 chrY 23017876 23018181 -28495403 - MER119 DNA MER1_type -225 358 1 323 212 0 0 chrY 23018877 23018943 -28494641 + MER116 DNA Mariner 9 74 -6 274 227 27 27 chrY 23019611 23019686 -28493898 + MIR SINE MIR 57 131 -131 606 228 7 16 chrY 23020784 23020940 -28492644 + MIR SINE MIR 46 203 -59 268 268 94 55 chrY 23021013 23021140 -28492444 - L3 LINE CR1 -23 1554 1423 1377 279 66 16 chrY 23022088 23022587 -28490997 + MLT1L LTR MaLR 1 524 -91 729 205 187 0 chrY 23022607 23022773 -28490811 + MIR SINE MIR 29 225 -37 2412 185 43 19 chrY 23022903 23023432 -28490152 + L1MB4 LINE L1 5285 5826 -354 729 184 16 40 chrY 23023725 23023850 -28489734 + FLAM_A SINE Alu 1 122 -11 241 275 50 50 chrY 23024128 23024208 -28489376 - MLT1J2 LTR MaLR -321 129 69 207 0 0 0 chrY 23025098 23025121 -28488463 + (T)n Simple_repeat Simple_repeat 1 23 0 215 333 63 9 chrY 23025377 23025488 -28488096 + MIR SINE MIR 70 186 -76 847 182 0 26 chrY 23025505 23025659 -28487925 + AluJo SINE Alu 3 152 -160 1225 72 0 11 chrY 23025738 23025918 -28487666 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 329 283 20 0 chrY 23026742 23026846 -28486738 + MIR SINE MIR 38 149 -59 296 246 167 26 chrY 23027039 23027153 -28486431 - L2 LINE L2 -4 3309 3180 524 241 0 6 chrY 23027161 23027331 -28486253 + GA-rich Low_complexity Low_complexity 1 169 0 367 236 123 0 chrY 23027333 23027439 -28486145 - MER63 DNA MER1_type -91 745 1 527 272 64 53 chrY 23027455 23027738 -28485846 - L2 LINE L2 -557 2757 2472 233 290 29 14 chrY 23027734 23027803 -28485781 - L2 LINE L2 -66 3206 3137 * 377 255 114 60 chrY 23028381 23028728 -28484856 + MLT1H LTR MaLR 66 549 0 310 111 95 16 chrY 23028845 23028908 -28484676 + LTR8A LTR ERV1 1 68 -659 308 296 102 9 chrY 23028915 23029023 -28484561 + MER50 LTR ERV1 12 129 -605 1752 185 3 0 chrY 23029033 23029330 -28484254 + AluJb SINE Alu 6 303 -9 4082 149 58 5 chrY 23029335 23030007 -28483577 + MER50 LTR ERV1 1 708 -26 360 59 0 0 chrY 23030007 23030058 -28483526 + L1MB4 LINE L1 6129 6179 -1 1610 196 55 81 chrY 23030066 23030633 -28482951 + L1ME1 LINE L1 1849 2400 -3996 529 174 0 20 chrY 23030640 23030738 -28482846 - AluSg1 SINE Alu -212 97 2 632 230 108 65 chrY 23030821 23031099 -28482485 + MER76 LTR ERV 19 308 -380 924 173 0 0 chrY 23031123 23031302 -28482282 + CT-rich Low_complexity Low_complexity 1 179 0 732 97 0 26 chrY 23031170 23031427 -28482157 - AluSg/x SINE Alu 0 455 202 * 698 198 69 135 chrY 23031427 23031790 -28481794 + MER76 LTR ERV 350 688 0 4825 231 33 55 chrY 23031792 23032699 -28480885 + L1ME1 LINE L1 2400 3326 -2889 1820 166 0 13 chrY 23032699 23033012 -28480572 + AluSq SINE Alu 1 309 -4 4825 231 33 55 chrY 23033012 23033283 -28480301 + L1ME1 LINE L1 3326 3601 -2614 1879 154 0 7 chrY 23033283 23033575 -28480009 + AluSx SINE Alu 7 296 -16 4825 231 33 55 chrY 23033575 23034111 -28479473 + L1ME1 LINE L1 3601 4077 -2138 2112 165 38 36 chrY 23034111 23034662 -28478922 + MLT2A2 LTR ERVL 1 554 0 4853 212 82 22 chrY 23034662 23035467 -28478117 + L1ME1 LINE L1 4073 4828 -1407 465 71 0 0 chrY 23035467 23035537 -28478047 + (TG)n Simple_repeat Simple_repeat 2 71 0 4853 212 82 22 chrY 23035537 23036764 -28476820 + L1ME1 LINE L1 4828 6226 -9 2852 129 35 208 chrY 23036773 23037140 -28476444 + L1 LINE L1 3952 4381 -1765 369 0 0 0 chrY 23037140 23037181 -28476403 + (TTA)n Simple_repeat Simple_repeat 3 43 0 809 0 0 0 chrY 23037181 23037270 -28476314 - L1PA4 LINE L1 -18 6137 6049 2852 129 35 208 chrY 23037270 23037933 -28475651 + L1 LINE L1 4379 4804 -1342 1861 171 38 26 chrY 23037934 23038280 -28475304 + Tigger2a DNA MER2_type 13 362 -72 362 203 43 0 chrY 23038344 23038413 -28475171 + Tigger2a DNA MER2_type 371 442 -2 762 203 19 0 chrY 23038419 23038577 -28475007 + L1MA9 LINE L1 5921 6081 -231 24 0 0 0 chrY 23038713 23038737 -28474847 + AT_rich Low_complexity Low_complexity 1 24 0 1600 121 17 69 chrY 23039259 23039610 -28473974 - Tigger4(Zombi) DNA MER2_type -1 2730 6 266 346 96 0 chrY 23040002 23040106 -28473478 - L2 LINE L2 -3 3269 3156 398 277 0 0 chrY 23040214 23040326 -28473258 - HAL1b LINE L1 -20 1328 1217 180 279 16 16 chrY 23040644 23040705 -28472879 + MIR SINE MIR 87 147 -61 391 301 57 16 chrY 23040823 23040946 -28472638 + L2 LINE L2 3182 3309 -4 310 232 81 10 chrY 23040988 23041087 -28472497 + MER91C DNA MER1_type 33 138 -2 22 0 0 0 chrY 23041124 23041146 -28472438 + AT_rich Low_complexity Low_complexity 1 22 0 254 276 17 52 chrY 23041146 23041262 -28472322 - HAL1b LINE L1 -34 1314 1203 360 0 0 0 chrY 23041265 23041305 -28472279 + (TA)n Simple_repeat Simple_repeat 2 41 0 382 274 111 60 chrY 23041325 23041436 -28472148 - L1ME4a LINE L1 -202 5919 5815 704 260 8 68 chrY 23041436 23041671 -28471913 + MER58A DNA MER1_type 1 221 -3 382 274 111 60 chrY 23041671 23041891 -28471693 - L1ME4a LINE L1 -306 5815 5571 1973 151 3 3 chrY 23042536 23042861 -28470723 - L1PB3 LINE L1 -1 6153 5829 279 204 0 0 chrY 23044281 23044330 -28469254 + MER5B DNA MER1_type 1 49 -129 2692 198 75 29 chrY 23044405 23044540 -28469044 + L1ME2 LINE L1 5454 5581 -583 2029 133 0 3 chrY 23044540 23044840 -28468744 + AluSg SINE Alu 6 304 -6 2692 198 75 29 chrY 23044840 23045371 -28468213 + L1ME2 LINE L1 5581 6151 -13 445 287 31 31 chrY 23045394 23045523 -28468061 + MER5B DNA MER1_type 50 178 0 180 363 99 0 chrY 23045776 23045867 -28467717 - L2 LINE L2 -3 3310 3211 1704 229 5 17 chrY 23046000 23046415 -28467169 + L1ME1 LINE L1 5578 5987 -179 568 217 7 0 chrY 23046428 23046566 -28467018 + L1MA10 LINE L1 6192 6330 -4 3235 207 63 36 chrY 23046945 23047742 -28465842 + L1MB5 LINE L1 4864 5712 -462 4640 103 3 7 chrY 23047742 23048424 -28465160 + L1PA14 LINE L1 5483 6161 0 3235 207 63 36 chrY 23048424 23048891 -28464693 + L1MB5 LINE L1 5712 6165 -9 449 268 100 50 chrY 23049019 23049239 -28464345 + MIR SINE MIR 14 244 -18 8872 178 53 61 chrY 23049359 23051283 -28462301 + L1MA4 LINE L1 13 1921 -5247 * 9843 185 25 104 chrY 23051280 23052239 -28461345 + L1MA4 LINE L1 2749 3782 -3385 279 54 0 0 chrY 23052239 23052276 -28461308 + (TA)n Simple_repeat Simple_repeat 1 37 0 9843 185 25 104 chrY 23052276 23053132 -28460452 + L1MA4 LINE L1 3782 4704 -2463 2301 93 0 3 chrY 23053132 23053444 -28460140 + AluY SINE Alu 1 311 0 9843 185 25 104 chrY 23053444 23054986 -28458598 + L1MA4 LINE L1 4704 5794 -1373 3412 144 29 15 chrY 23054986 23055603 -28457981 + L1MA4 LINE L1 6689 7315 -6 432 270 95 0 chrY 23056223 23056371 -28457213 - MIR SINE MIR -48 214 53 21 36 0 0 chrY 23056477 23056505 -28457079 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrY 23056623 23056645 -28456939 + (A)n Simple_repeat Simple_repeat 1 22 0 25 31 0 0 chrY 23056825 23056857 -28456727 + AT_rich Low_complexity Low_complexity 1 32 0 413 243 86 33 chrY 23057513 23057665 -28455919 + MER5A DNA MER1_type 7 166 -23 198 0 0 0 chrY 23058639 23058661 -28454923 + (T)n Simple_repeat Simple_repeat 1 22 0 263 254 0 0 chrY 23059651 23059710 -28453874 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1498 174 38 51 chrY 23063261 23063392 -28450192 + AluJo SINE Alu 1 132 -180 2374 84 0 0 chrY 23063392 23063691 -28449893 + AluY SINE Alu 1 299 -12 1498 174 38 51 chrY 23063691 23063875 -28449709 + AluJo SINE Alu 132 312 0 2384 177 86 35 chrY 23064231 23064834 -28448750 + L1MB8 LINE L1 5545 6178 0 201 294 110 55 chrY 23064920 23065083 -28448501 - MIR3 SINE MIR -32 176 5 1920 150 0 19 chrY 23065219 23065533 -28448051 - AluJb SINE Alu -4 308 1 2397 51 3 29 chrY 23065760 23066073 -28447511 + AluY SINE Alu 1 305 -6 1811 136 17 10 chrY 23066412 23066707 -28446877 + AluSx SINE Alu 1 297 -15 22 70 0 0 chrY 23067560 23067603 -28445981 + AT_rich Low_complexity Low_complexity 1 43 0 180 269 124 48 chrY 23068234 23068379 -28445205 - L2 LINE L2 -10 3303 3148 34 49 0 37 chrY 23069323 23069404 -28444180 + AT_rich Low_complexity Low_complexity 1 78 0 251 371 51 40 chrY 23072631 23072806 -28440778 + L3 LINE CR1 1109 1285 -292 251 371 51 40 chrY 23075017 23075192 -28438392 + L3 LINE CR1 1109 1285 -292 251 371 51 40 chrY 23077402 23077577 -28436007 + L3 LINE CR1 1109 1285 -292 251 371 51 40 chrY 23079786 23079961 -28433623 + L3 LINE CR1 1109 1285 -292 251 371 51 40 chrY 23082170 23082345 -28431239 + L3 LINE CR1 1109 1285 -292 42092 40 21 2 chrY 23082821 23088859 -28424725 + L1PA2 LINE L1 1 6154 -1 232 419 36 24 chrY 23089582 23089749 -28423835 + L3 LINE CR1 1117 1285 -292 183 80 0 0 chrY 23090212 23090237 -28423347 + (A)n Simple_repeat Simple_repeat 1 25 0 206 396 61 24 chrY 23094356 23094520 -28419064 + L3 LINE CR1 1117 1286 -291 369 297 43 11 chrY 23096498 23096683 -28416901 - L1M4 LINE L1 -863 5283 5093 332 323 116 66 chrY 23098399 23098795 -28414789 - L3 LINE CR1 -45 1532 1117 288 0 0 0 chrY 23100967 23100999 -28412585 + (A)n Simple_repeat Simple_repeat 1 32 0 331 356 44 31 chrY 23101099 23101259 -28412325 - L3 LINE CR1 -299 1278 1117 216 0 0 0 chrY 23102540 23102564 -28411020 + (T)n Simple_repeat Simple_repeat 1 24 0 1194 126 11 11 chrY 23103021 23103203 -28410381 + AluSg/x SINE Alu 109 290 -22 315 231 22 22 chrY 23103206 23103297 -28410287 - L1ME LINE L1 -415 5706 5616 271 108 0 0 chrY 23103334 23103371 -28410213 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 21 0 0 0 chrY 23103822 23103843 -28409741 + AT_rich Low_complexity Low_complexity 1 21 0 632 261 68 10 chrY 23105292 23105499 -28408085 - MER20 DNA MER1_type 0 219 1 201 74 0 0 chrY 23105695 23105722 -28407862 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chrY 23106922 23106945 -28406639 + (T)n Simple_repeat Simple_repeat 1 23 0 319 302 112 9 chrY 23109588 23109704 -28403880 - L2 LINE L2 -1 3312 3185 239 246 102 42 chrY 23109993 23110111 -28403473 + L1MEd LINE L1 62 186 -5933 262 194 14 56 chrY 23110162 23110234 -28403350 - MER81 DNA DNA -7 107 39 343 314 92 94 chrY 23110301 23110683 -28402901 + L1MEd LINE L1 269 649 -5470 457 255 191 18 chrY 23111204 23111486 -28402098 - HAL1 LINE L1 -794 1713 1383 1497 199 0 7 chrY 23112387 23112664 -28400920 + AluSx SINE Alu 15 289 -23 72 32 0 0 chrY 23112733 23112826 -28400758 + AT_rich Low_complexity Low_complexity 1 93 0 441 248 39 62 chrY 23112830 23112959 -28400625 + MER5B DNA MER1_type 47 172 -6 373 258 274 0 chrY 23112999 23113123 -28400461 + MER5A DNA MER1_type 16 173 -16 1085 293 63 33 chrY 23113220 23113647 -28399937 + LTR67 LTR ERVL 112 551 -6 927 266 72 0 chrY 23114385 23114607 -28398977 - MIR SINE MIR -22 240 3 1463 226 23 42 chrY 23114729 23115171 -28398413 + MLT1A1 LTR MaLR 3 363 -2 1991 162 51 22 chrY 23115175 23115546 -28398038 + MLT1A1-int LTR MaLR 6 387 -1348 777 186 8 0 chrY 23116446 23116575 -28397009 - FLAM_A SINE Alu -2 131 2 681 289 50 40 chrY 23116618 23117166 -28396418 - L1M3 LINE L1 -349 5822 5272 216 86 0 0 chrY 23117168 23117203 -28396381 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2054 127 0 0 chrY 23117205 23117496 -28396088 - AluSx SINE Alu -21 291 1 234 0 0 0 chrY 23118359 23118385 -28395199 + (A)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chrY 23120166 23120191 -28393393 + (T)n Simple_repeat Simple_repeat 1 25 0 206 396 61 24 chrY 23120639 23120803 -28392781 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 23122548 23122584 -28391000 + (T)n Simple_repeat Simple_repeat 1 36 0 187 388 66 26 chrY 23123043 23123195 -28390389 - L3 LINE CR1 -291 1286 1129 206 396 61 24 chrY 23125407 23125571 -28388013 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 23127313 23127349 -28386235 + (T)n Simple_repeat Simple_repeat 1 36 0 187 388 66 26 chrY 23127808 23127960 -28385624 - L3 LINE CR1 -291 1286 1129 206 396 61 24 chrY 23130185 23130349 -28383235 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 23132094 23132130 -28381454 + (T)n Simple_repeat Simple_repeat 1 36 0 187 388 66 26 chrY 23132589 23132741 -28380843 - L3 LINE CR1 -291 1286 1129 21 0 0 0 chrY 23136859 23136880 -28376704 + AT_rich Low_complexity Low_complexity 1 21 0 232 419 36 24 chrY 23137340 23137507 -28376077 - L3 LINE CR1 -292 1285 1117 42073 40 21 2 chrY 23138229 23144267 -28369317 - L1PA2 LINE L1 -1 6154 1 206 396 61 24 chrY 23144757 23144921 -28368663 - L3 LINE CR1 -291 1286 1117 234 373 53 41 chrY 23147078 23147247 -28366337 - L3 LINE CR1 -292 1285 1115 34 49 0 37 chrY 23150480 23150561 -28363023 + AT_rich Low_complexity Low_complexity 1 78 0 22 70 0 0 chrY 23152281 23152324 -28361260 + AT_rich Low_complexity Low_complexity 1 43 0 1842 136 17 10 chrY 23153177 23153472 -28360112 - AluSx SINE Alu -15 297 1 2436 51 3 29 chrY 23153811 23154124 -28359460 - AluY SINE Alu -6 305 1 1948 150 0 19 chrY 23154351 23154665 -28358919 + AluJb SINE Alu 1 308 -4 202 294 110 55 chrY 23154801 23154964 -28358620 + MIR3 SINE MIR 5 176 -32 2348 177 86 35 chrY 23155050 23155653 -28357931 - L1MB8 LINE L1 0 6178 5545 1521 174 38 51 chrY 23156009 23156193 -28357391 - AluJo SINE Alu 0 312 132 2409 84 0 0 chrY 23156193 23156492 -28357092 - AluY SINE Alu -12 299 1 1521 174 38 51 chrY 23156492 23156623 -28356961 - AluJo SINE Alu -180 132 1 263 254 0 0 chrY 23160174 23160233 -28353351 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chrY 23161223 23161245 -28352339 + (A)n Simple_repeat Simple_repeat 1 22 0 421 243 86 33 chrY 23162219 23162371 -28351213 - MER5A DNA MER1_type -23 166 7 25 31 0 0 chrY 23163027 23163059 -28350525 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chrY 23163239 23163261 -28350323 + (T)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chrY 23163379 23163407 -28350177 + AT_rich Low_complexity Low_complexity 1 28 0 433 270 95 0 chrY 23163513 23163661 -28349923 + MIR SINE MIR 53 214 -48 3420 144 29 15 chrY 23164281 23164899 -28348685 - L1MA4 LINE L1 -6 6294 5668 9673 185 25 104 chrY 23164899 23166440 -28347144 - L1 LINE L1 -1374 5793 4132 2331 93 0 3 chrY 23166440 23166752 -28346832 - AluY SINE Alu 0 311 1 9673 185 25 104 chrY 23166752 23167608 -28345976 - L1 LINE L1 -3035 4132 3782 279 54 0 0 chrY 23167608 23167645 -28345939 + (TA)n Simple_repeat Simple_repeat 2 38 0 9673 185 25 104 chrY 23167645 23168604 -28344980 - L1 LINE L1 -3385 3782 2749 9010 178 53 61 chrY 23168601 23170525 -28343059 - L1 LINE L1 -5247 1921 13 * 449 268 100 50 chrY 23170645 23170865 -28342719 - MIR SINE MIR -18 244 14 3196 207 63 36 chrY 23170993 23171460 -28342124 - L1MB5 LINE L1 -9 6165 5712 4661 103 3 7 chrY 23171460 23172142 -28341442 - L1PA14 LINE L1 0 6161 5483 3196 207 63 36 chrY 23172142 23172939 -28340645 - L1MB5 LINE L1 -462 5712 4864 564 217 7 0 chrY 23173318 23173456 -28340128 - L1MA10 LINE L1 -4 6330 6192 1678 229 5 17 chrY 23173469 23173884 -28339700 - L1ME1 LINE L1 -179 5987 5578 446 287 31 31 chrY 23174361 23174490 -28339094 - MER5B DNA MER1_type 0 178 50 2662 198 75 29 chrY 23174513 23175044 -28338540 - L1ME2 LINE L1 -13 6151 5581 2058 133 0 3 chrY 23175044 23175344 -28338240 - AluSg SINE Alu -6 304 6 2662 198 75 29 chrY 23175344 23175479 -28338105 - L1ME2 LINE L1 -583 5581 5454 277 204 0 0 chrY 23175554 23175603 -28337981 - MER5B DNA MER1_type -129 49 1 1982 151 3 3 chrY 23177023 23177348 -28336236 + L1PB3 LINE L1 5829 6153 -1 354 274 111 60 chrY 23177993 23178213 -28335371 + L1ME4a LINE L1 5571 5815 -306 705 260 8 68 chrY 23178213 23178448 -28335136 - MER58A DNA MER1_type -3 221 1 354 274 111 60 chrY 23178448 23178559 -28335025 + L1ME4a LINE L1 5815 5919 -202 360 0 0 0 chrY 23178579 23178619 -28334965 + (TA)n Simple_repeat Simple_repeat 2 41 0 244 276 17 52 chrY 23178622 23178738 -28334846 + HAL1b LINE L1 1203 1314 -34 22 0 0 0 chrY 23178738 23178760 -28334824 + AT_rich Low_complexity Low_complexity 1 22 0 324 232 81 10 chrY 23178797 23178896 -28334688 + MER91C DNA MER1_type 3 108 -32 390 301 57 16 chrY 23178938 23179061 -28334523 - L2 LINE L2 -4 3309 3182 184 279 16 16 chrY 23179179 23179240 -28334344 - MIR SINE MIR -61 147 87 385 277 0 0 chrY 23179558 23179670 -28333914 + HAL1b LINE L1 1217 1328 -20 264 346 96 0 chrY 23179778 23179882 -28333702 + L2 LINE L2 3156 3269 -3 1587 121 17 69 chrY 23180274 23180625 -28332959 + Tigger4(Zombi) DNA MER2_type 6 2730 -1 24 0 0 0 chrY 23181147 23181171 -28332413 + AT_rich Low_complexity Low_complexity 1 24 0 758 203 19 0 chrY 23181307 23181465 -28332119 - L1MA9 LINE L1 -231 6081 5921 367 203 43 0 chrY 23181471 23181540 -28332044 - Tigger2a DNA MER2_type -2 442 371 1849 171 38 26 chrY 23181604 23181950 -28331634 - Tigger2a DNA MER2_type -72 362 13 2314 164 36 8 chrY 23181951 23182427 -28331157 - L1 LINE L1 -1342 4804 4316 1655 30 0 0 chrY 23182419 23182616 -28330968 - L1PA4 LINE L1 -211 5944 5748 * 813 0 0 0 chrY 23182616 23182744 -28330840 + L1PA4 LINE L1 6049 6178 0 1766 173 55 3 chrY 23182747 23183111 -28330473 - L1 LINE L1 -1812 4334 3952 5001 210 83 23 chrY 23183120 23184347 -28329237 - L1ME1 LINE L1 -9 6226 4828 465 71 0 0 chrY 23184347 23184417 -28329167 + (CA)n Simple_repeat Simple_repeat 2 71 0 5001 210 83 23 chrY 23184417 23185222 -28328362 - L1ME1 LINE L1 -1407 4828 4073 2166 165 38 36 chrY 23185222 23185773 -28327811 - MLT2A2 LTR ERVL 0 554 1 5080 232 33 47 chrY 23185773 23186291 -28327293 - L1ME1 LINE L1 -2138 4077 3553 1905 155 0 16 chrY 23186291 23186601 -28326983 - AluSx SINE Alu -1 311 7 5080 232 33 47 chrY 23186601 23186872 -28326712 - L1ME1 LINE L1 -2662 3553 3280 1846 162 0 13 chrY 23186872 23187181 -28326403 - AluSq SINE Alu -4 309 5 5080 232 33 47 chrY 23187181 23188092 -28325492 - L1ME1 LINE L1 -2935 3280 2400 698 198 69 135 chrY 23188094 23188457 -28325127 - MER76 LTR ERV 0 688 350 732 97 0 26 chrY 23188457 23188570 -28325014 + AluSg/x SINE Alu 200 309 -1 924 173 0 0 chrY 23188582 23188761 -28324823 + GA-rich Low_complexity Low_complexity 1 179 0 632 230 108 65 chrY 23188785 23189063 -28324521 - MER76 LTR ERV -380 308 19 529 174 0 20 chrY 23189146 23189244 -28324340 + AluSg1 SINE Alu 2 97 -212 1610 196 55 81 chrY 23189251 23189818 -28323766 - L1ME1 LINE L1 -3996 2400 1849 360 59 0 0 chrY 23189826 23189877 -28323707 - L1MB4 LINE L1 -1 6179 6129 4082 149 58 5 chrY 23189877 23190549 -28323035 - MER50 LTR ERV1 -26 708 1 1752 185 3 0 chrY 23190554 23190851 -28322733 - AluJb SINE Alu -9 303 6 308 296 102 9 chrY 23190861 23190969 -28322615 - MER50 LTR ERV1 -605 129 12 310 111 95 16 chrY 23190976 23191039 -28322545 - LTR8A LTR ERV1 -659 68 1 377 255 114 60 chrY 23191156 23191503 -28322081 - MLT1H LTR MaLR 0 549 66 233 290 29 14 chrY 23192081 23192150 -28321434 + L2 LINE L2 3137 3206 -66 * 527 272 64 53 chrY 23192146 23192429 -28321155 + L2 LINE L2 2472 2757 -557 367 236 123 0 chrY 23192445 23192551 -28321033 + MER63 DNA MER1_type 1 745 -91 524 241 0 6 chrY 23192553 23192723 -28320861 + CT-rich Low_complexity Low_complexity 1 169 0 296 246 167 26 chrY 23192731 23192845 -28320739 + L2 LINE L2 3180 3309 -4 329 283 20 0 chrY 23193038 23193142 -28320442 - MIR SINE MIR -59 149 38 1225 72 0 11 chrY 23193966 23194146 -28319438 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 847 182 0 26 chrY 23194225 23194379 -28319205 - AluJo SINE Alu -160 152 3 215 333 63 9 chrY 23194396 23194507 -28319077 - MIR SINE MIR -76 186 70 207 0 0 0 chrY 23194763 23194786 -28318798 + (A)n Simple_repeat Simple_repeat 1 23 0 241 275 50 50 chrY 23195676 23195756 -28317828 + MLT1J2 LTR MaLR 69 129 -321 729 184 16 40 chrY 23196034 23196159 -28317425 - FLAM_A SINE Alu -11 122 1 2412 185 43 19 chrY 23196452 23196981 -28316603 - L1MB4 LINE L1 -354 5826 5285 729 205 187 0 chrY 23197111 23197277 -28316307 - MIR SINE MIR -37 225 29 1377 279 66 16 chrY 23197297 23197796 -28315788 - MLT1L LTR MaLR -91 524 1 268 268 94 55 chrY 23198744 23198871 -28314713 + L3 LINE CR1 1423 1554 -23 606 228 7 16 chrY 23198944 23199100 -28314484 - MIR SINE MIR -59 203 46 274 227 27 27 chrY 23200198 23200273 -28313311 - MIR SINE MIR -131 131 57 323 212 0 0 chrY 23200941 23201007 -28312577 - MER116 DNA Mariner -6 74 9 1692 241 23 24 chrY 23201703 23202008 -28311576 + MER119 DNA MER1_type 1 358 -225 2299 85 0 31 chrY 23202008 23202327 -28311257 + AluY SINE Alu 1 309 -2 1692 241 23 24 chrY 23202327 23202553 -28311031 + MER119 DNA MER1_type 358 583 0 5331 146 92 91 chrY 23202559 23204382 -28309202 + pTR5 LTR ERV1 743 2438 0 36407 95 6 7 chrY 23204385 23209332 -28304252 + Harlequin LTR ERV1 1 4944 -3455 726 166 137 22 chrY 23209333 23209604 -28303980 + Harlequin LTR ERV1 840 1141 -5755 * 2661 106 11 3 chrY 23209600 23209979 -28303605 + Harlequin LTR ERV1 7501 7882 -517 * 7213 125 17 27 chrY 23209974 23211548 -28302036 + pTR5 LTR ERV1 734 2009 -429 1316 222 24 24 chrY 23211803 23212096 -28301488 + AluJo SINE Alu 1 293 -19 182 33 67 0 chrY 23213112 23213142 -28300442 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 189 107 0 0 chrY 23213457 23213485 -28300099 + (A)n Simple_repeat Simple_repeat 1 28 0 330 355 61 37 chrY 23213715 23213929 -28299655 + L2 LINE L2 2569 2787 -527 211 288 114 30 chrY 23214817 23214949 -28298635 - MIR SINE MIR -11 251 109 585 269 17 21 chrY 23215616 23216700 -28296884 + BSR/Beta Satellite Satellite 1 1079 -6 1063 280 8 33 chrY 23216754 23217303 -28296281 + BSR/Beta Satellite Satellite 1 535 -37 2374 239 70 22 chrY 23217333 23218382 -28295202 - L1M3 LINE L1 -703 5480 4394 1844 234 20 8 chrY 23218379 23218874 -28294710 + L1M3 LINE L1 3905 4405 -1741 * 1031 199 11 6 chrY 23219034 23219210 -28294374 + MER61B LTR ERV1 1 177 -248 12493 177 30 16 chrY 23219254 23222977 -28290607 + MER61B-int LTR ERV1 1454 5217 0 1934 224 9 42 chrY 23222982 23223416 -28290168 + MER61B LTR ERV1 6 425 0 514 284 31 5 chrY 23223428 23223650 -28289934 - L1M4 LINE L1 -1277 4869 4642 1308 204 0 19 chrY 23223660 23223924 -28289660 + AluJb SINE Alu 11 269 -43 304 294 29 0 chrY 23223941 23224043 -28289541 - L1M4 LINE L1 -1498 4648 4544 378 353 17 4 chrY 23224072 23224307 -28289277 - L1ME LINE L1 -3262 2818 2581 313 289 108 39 chrY 23224323 23224555 -28289029 - L1ME LINE L1 -5054 1016 769 191 194 0 39 chrY 23224620 23224723 -28288861 + T-rich Low_complexity Low_complexity 3 101 0 1621 141 53 42 chrY 23225113 23225396 -28288188 - AluSx SINE Alu -26 286 1 1613 251 15 62 chrY 23226303 23226769 -28286815 - LTR32 LTR ERVL -21 450 7 2819 16 0 3 chrY 23227160 23227472 -28286112 - AluYa5 SINE Alu 0 311 1 3442 60 0 7 chrY 23227472 23227924 -28285660 - L1P LINE L1 -781 5365 4917 1962 108 75 4 chrY 23228131 23228410 -28285174 + AluSx SINE Alu 1 299 -13 557 113 183 9 chrY 23228836 23228951 -28284633 + L1PA13 LINE L1 6026 6160 -3 531 209 111 52 chrY 23228960 23229132 -28284452 + L1ME1 LINE L1 5980 6161 -5 251 235 29 0 chrY 23229945 23230013 -28283571 - L1ME4a LINE L1 -70 6051 5982 1753 163 12 38 chrY 23230064 23230383 -28283201 + AluJo SINE Alu 1 311 -1 578 270 74 69 chrY 23230697 23231264 -28282320 - L1ME4a LINE L1 -337 5827 5258 282 183 85 12 chrY 23231309 23231391 -28282193 - L1ME LINE L1 -303 5818 5731 632 211 0 9 chrY 23231842 23231956 -28281628 - MER58B DNA MER1_type 0 341 229 614 209 147 0 chrY 23231961 23232090 -28281494 + MER58B DNA MER1_type 192 339 -2 204 206 0 0 chrY 23232809 23232843 -28280741 + polypyrimidine Low_complexity Low_complexity 3 36 0 1804 143 38 7 chrY 23233378 23233665 -28279919 - AluSx SINE Alu -16 296 1 930 181 121 0 chrY 23233787 23233969 -28279615 - MER3 DNA MER1_type 0 209 6 534 311 44 0 chrY 23234094 23234229 -28279355 - MIR3 SINE MIR -21 187 47 210 340 75 0 chrY 23234661 23234767 -28278817 + MIR SINE MIR 32 145 -63 2124 118 0 16 chrY 23234998 23235302 -28278282 + AluSx SINE Alu 1 299 -13 34 84 0 0 chrY 23235400 23235483 -28278101 + AT_rich Low_complexity Low_complexity 1 83 0 2043 106 10 7 chrY 23235483 23235776 -28277808 + AluSx SINE Alu 1 294 -18 569 286 43 73 chrY 23236304 23236538 -28277046 - MIR SINE MIR -32 230 4 688 214 0 7 chrY 23236638 23236778 -28276806 - FRAM SINE Alu -1 175 37 522 164 18 9 chrY 23237226 23237394 -28276190 - MER58B DNA MER1_type -1 340 5 23 33 0 0 chrY 23237593 23237623 -28275961 + AT_rich Low_complexity Low_complexity 1 30 0 319 252 43 43 chrY 23237697 23237836 -28275748 + L1ME4a LINE L1 5926 6064 -57 250 371 51 40 chrY 23238796 23238971 -28274613 + L3 LINE CR1 1109 1285 -292 203 133 0 0 chrY 23340308 23340338 -28173246 + (TG)n Simple_repeat Simple_repeat 1 30 0 605 264 32 7 chrY 23341920 23342075 -28171509 - MIR SINE MIR -76 186 28 22 0 0 0 chrY 23342996 23343018 -28170566 + AT_rich Low_complexity Low_complexity 1 22 0 2017 106 7 7 chrY 23343070 23343352 -28170232 + AluSq SINE Alu 1 282 -31 12147 30 1 0 chrY 23344951 23347159 -28166425 - L1PA2 LINE L1 0 6155 3947 378 327 62 0 chrY 23347381 23347494 -28166090 - L2 LINE L2 -16 3256 3137 613 341 100 55 chrY 23347673 23348165 -28165419 - L2 LINE L2 -400 2914 2377 1620 197 14 0 chrY 23348165 23348455 -28165129 + AluJo SINE Alu 4 297 -15 613 341 100 55 chrY 23348455 23348690 -28164894 - L2 LINE L2 -937 2377 2154 595 269 126 14 chrY 23349750 23349973 -28163611 - MIR SINE MIR -3 259 12 1423 154 150 11 chrY 23350154 23350414 -28163170 - AluJo SINE Alu -6 296 1 630 179 0 9 chrY 23350444 23350556 -28163028 + FRAM SINE Alu 5 115 -61 360 0 0 0 chrY 23350569 23350609 -28162975 + (TC)n Simple_repeat Simple_repeat 2 41 0 216 0 0 0 chrY 23350608 23350632 -28162952 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 2378 78 10 0 chrY 23351217 23351513 -28162071 - AluY SINE Alu -12 299 1 233 313 48 82 chrY 23351547 23351694 -28161890 + L2 LINE L2 3128 3269 -3 1713 226 136 22 chrY 23353393 23353943 -28159641 + MLT1E2 LTR MaLR 11 623 -3 29 0 0 0 chrY 23356357 23356386 -28157198 + AT_rich Low_complexity Low_complexity 1 29 0 2024 141 7 0 chrY 23357686 23357985 -28155599 - AluSx SINE Alu -11 301 1 257 213 98 0 chrY 23358100 23358161 -28155423 - MIR SINE MIR -97 111 45 222 341 49 12 chrY 23358195 23358277 -28155307 - L2 LINE L2 -4 3309 3225 1703 173 23 13 chrY 23358792 23359093 -28154491 - AluJb SINE Alu -8 304 1 405 356 0 12 chrY 23359416 23359576 -28154008 + MER5B DNA MER1_type 1 158 -20 195 139 0 0 chrY 23360635 23360671 -28152913 + (T)n Simple_repeat Simple_repeat 1 36 0 302 418 0 7 chrY 23360820 23360973 -28152611 + L2 LINE L2 2561 2712 -602 * 325 306 77 55 chrY 23360964 23361147 -28152437 - L2 LINE L2 -27 3245 3059 255 314 0 0 chrY 23361768 23361854 -28151730 + L1 LINE L1 4729 4814 -1332 3944 77 34 0 chrY 23362105 23362640 -28150944 - MER41A LTR ERV1 -1 553 1 26 0 0 0 chrY 23362663 23362689 -28150895 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrY 23362897 23362919 -28150665 + AT_rich Low_complexity Low_complexity 1 22 0 2306 101 0 0 chrY 23363166 23363463 -28150121 + AluSx SINE Alu 1 297 -15 1772 129 8 16 chrY 23363760 23364015 -28149569 + AluJb SINE Alu 24 276 -36 1011 114 0 0 chrY 23364015 23364147 -28149437 + AluJb SINE Alu 168 299 -13 1296 184 36 18 chrY 23364429 23364706 -28148878 + AluJo SINE Alu 1 282 -30 954 45 0 30 chrY 23365043 23365176 -28148408 - L1PA4 LINE L1 0 6155 6027 607 143 0 0 chrY 23365176 23365267 -28148317 + FLAM_C SINE Alu 33 123 -20 587 144 0 0 chrY 23365491 23365581 -28148003 + AluJ/FLAM SINE Alu 1 90 -222 1702 129 0 110 chrY 23367230 23367567 -28146017 - AluSx SINE Alu 0 303 2 21 36 0 0 chrY 23368390 23368418 -28145166 + AT_rich Low_complexity Low_complexity 1 28 0 354 247 11 11 chrY 23369505 23369598 -28143986 - MER94 DNA DNA -34 100 8 21 0 0 0 chrY 23370252 23370273 -28143311 + AT_rich Low_complexity Low_complexity 1 21 0 431 275 74 35 chrY 23372308 23372537 -28141047 + MIR SINE MIR 16 253 -9 1991 113 11 3 chrY 23373343 23373626 -28139958 - AluSq SINE Alu -20 293 9 384 22 0 0 chrY 23374883 23374928 -28138656 + (TG)n Simple_repeat Simple_repeat 2 46 0 257 314 82 36 chrY 23378219 23378413 -28135171 + LTR67 LTR ERVL 347 549 -8 184 360 70 10 chrY 23378526 23378626 -28134958 - L2 LINE L2 -4 3309 3204 2025 140 0 0 chrY 23378908 23379201 -28134383 + AluSp SINE Alu 1 293 -20 415 225 70 7 chrY 23380677 23380819 -28132765 - L1M4 LINE L1 -1539 4607 4457 10192 131 28 6 chrY 23381405 23383913 -28129671 - L1PA7 LINE L1 -8 6146 3596 1780 176 6 10 chrY 23383913 23384226 -28129358 - AluSx SINE Alu 0 312 1 1084 97 0 0 chrY 23384407 23384552 -28129032 + AluY SINE Alu 163 307 -4 1319 169 16 93 chrY 23384653 23384966 -28128618 + MER52C LTR ERV1 990 1278 0 36 53 0 0 chrY 23385133 23385190 -28128394 + AT_rich Low_complexity Low_complexity 1 57 0 223 331 91 0 chrY 23385789 23385910 -28127674 - MIR SINE MIR -78 184 53 234 0 0 0 chrY 23386147 23386173 -28127411 + (T)n Simple_repeat Simple_repeat 1 26 0 429 321 95 34 chrY 23386312 23386608 -28126976 + L2 LINE L2 2418 2731 -583 622 232 7 21 chrY 23386867 23387009 -28126575 - MLT1D LTR MaLR -65 440 301 310 289 24 15 chrY 23387125 23387309 -28126275 - L1M4b LINE L1 -5282 1665 1352 2883 188 25 3 chrY 23387634 23388202 -28125382 - LTR22 LTR ERVK 0 580 1 7538 184 9 6 chrY 23388203 23390165 -28123419 - HERVK22 LTR ERVK -2 6835 4770 4118 129 15 128 chrY 23390165 23391092 -28122492 - LTR12 LTR ERV1 0 826 5 2507 182 15 26 chrY 23391107 23391718 -28121866 - pTR5 LTR ERV1 -1093 1345 742 * 12188 166 2 15 chrY 23391717 23394272 -28119312 - HERVK22 LTR ERVK -2064 4773 2267 1781 183 30 158 chrY 23394272 23394912 -28118672 + LTR6A LTR ERV1 1 564 0 12764 164 3 7 chrY 23394912 23397147 -28116437 - HERVK22 LTR ERVK -4566 2271 46 3060 109 15 0 chrY 23397147 23397960 -28115624 - L1P2 LINE L1 -420 5734 4909 2878 155 29 39 chrY 23398558 23399120 -28114464 - LTR6A LTR ERV1 0 564 9 195 42 0 0 chrY 23399689 23399713 -28113871 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2646 148 62 6 chrY 23401138 23401605 -28111979 - MER1A DNA MER1_type -6 523 31 2048 51 0 0 chrY 23402028 23402284 -28111300 + L1PA4 LINE L1 5899 6154 -1 201 147 0 0 chrY 23402719 23402753 -28110831 + (TTG)n Simple_repeat Simple_repeat 2 35 0 381 218 0 0 chrY 23403219 23403343 -28110241 + CT-rich Low_complexity Low_complexity 1 124 0 207 364 8 8 chrY 23403757 23403878 -28109706 + (TTG)n Simple_repeat Simple_repeat 2 122 0 405 0 0 0 chrY 23404738 23404783 -28108801 + (CA)n Simple_repeat Simple_repeat 2 46 0 52 64 0 0 chrY 23404794 23404888 -28108696 + AT_rich Low_complexity Low_complexity 1 94 0 22 35 0 0 chrY 23405127 23405156 -28108428 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrY 23405241 23405264 -28108320 + AT_rich Low_complexity Low_complexity 1 23 0 1572 197 11 3 chrY 23405264 23405548 -28108036 - AluSx SINE Alu -25 287 2 22 35 0 0 chrY 23405774 23405803 -28107781 + AT_rich Low_complexity Low_complexity 1 29 0 2021 134 13 3 chrY 23406190 23406489 -28107095 + AluY SINE Alu 10 311 0 216 0 0 0 chrY 23407868 23407892 -28105692 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1124 71 11 27 chrY 23409296 23409479 -28104105 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 339 200 0 22 chrY 23410797 23410887 -28102697 + L1MA9 LINE L1 6078 6165 -147 27 0 0 0 chrY 23411048 23411075 -28102509 + AT_rich Low_complexity Low_complexity 1 27 0 1745 150 29 0 chrY 23411737 23412017 -28101567 - AluSq SINE Alu -25 288 1 838 111 8 0 chrY 23412403 23412520 -28101064 + AluSc SINE Alu 1 118 -191 23 0 0 0 chrY 23412531 23412554 -28101030 + AT_rich Low_complexity Low_complexity 1 23 0 225 65 0 0 chrY 23413821 23413852 -28099732 + (TTG)n Simple_repeat Simple_repeat 2 32 0 189 314 29 29 chrY 23413950 23414020 -28099564 - MER5A DNA MER1_type -77 112 43 257 321 43 0 chrY 23414457 23414619 -28098965 + L1ME LINE L1 5343 5511 -653 22 0 0 0 chrY 23414745 23414767 -28098817 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chrY 23415031 23415060 -28098524 + AT_rich Low_complexity Low_complexity 1 29 0 2317 109 0 3 chrY 23415719 23416023 -28097561 - AluSc SINE Alu -6 303 1 35 24 0 0 chrY 23417020 23417062 -28096522 + AT_rich Low_complexity Low_complexity 1 42 0 3563 174 42 23 chrY 23417575 23418369 -28095215 + L1PA16 LINE L1 5357 6165 -1 651 162 17 0 chrY 23420472 23420589 -28092995 + MER41E LTR ERV1 1 119 -393 2623 157 29 100 chrY 23420971 23421704 -28091880 - LTR1 LTR ERV1 -104 681 1 186 39 0 0 chrY 23422328 23422354 -28091230 - L2 LINE L2 -4 3309 3284 820 228 141 47 chrY 23422909 23423164 -28090420 - AluJo SINE Alu -23 289 11 22 35 0 0 chrY 23424873 23424902 -28088682 + AT_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chrY 23424938 23424987 -28088597 + AT_rich Low_complexity Low_complexity 1 49 0 2173 90 3 16 chrY 23426692 23427014 -28086570 - L1PA6 LINE L1 0 6154 5837 777 59 0 0 chrY 23427014 23427115 -28086469 + L1P3 LINE L1 5432 5532 -622 295 248 62 26 chrY 23432424 23432537 -28081047 + MLT1F LTR MaLR 389 505 -37 1411 210 7 0 chrY 23433001 23433282 -28080302 + AluSx SINE Alu 1 283 -29 195 69 0 0 chrY 23433288 23433317 -28080267 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1304 236 0 29 chrY 23433361 23433670 -28079914 + AluSx SINE Alu 5 304 -8 529 187 15 8 chrY 23433689 23433823 -28079761 + GA-rich Low_complexity Low_complexity 2 136 0 472 271 106 7 chrY 23434431 23434582 -28079002 - FRAM SINE Alu 0 166 1 238 214 8 120 chrY 23434903 23435020 -28078564 - L1P LINE L1 -2580 3566 3463 546 338 54 37 chrY 23435856 23436317 -28077267 - L1M3b LINE L1 -5771 510 42 1675 176 0 43 chrY 23436391 23436714 -28076870 + AluSc SINE Alu 1 309 0 1582 206 37 46 chrY 23436926 23437358 -28076226 - MSTB1 LTR MaLR -1 431 4 521 233 8 30 chrY 23437226 23437359 -28076225 - MSTB LTR MaLR -294 132 3 343 333 24 45 chrY 23437639 23437696 -28075888 - L1M3de LINE L1 -5217 1436 1379 1692 124 120 11 chrY 23437696 23437962 -28075622 + AluSg SINE Alu 1 295 -15 343 333 24 45 chrY 23437962 23438246 -28075338 - L1M3de LINE L1 -5274 1379 371 22 35 0 0 chrY 23438494 23438523 -28075061 + AT_rich Low_complexity Low_complexity 1 29 0 233 185 0 0 chrY 23438523 23438577 -28075007 - L1MA4 LINE L1 -11 6289 6236 450 273 35 0 chrY 23438590 23438762 -28074822 + L1MA4 LINE L1 5999 6176 -124 1240 228 0 44 chrY 23438809 23439129 -28074455 + AluJo SINE Alu 2 307 -5 1440 210 11 14 chrY 23439187 23439473 -28074111 - AluSx SINE Alu -15 287 3 1253 227 33 4 chrY 23439956 23440256 -28073328 + AluSg SINE Alu 1 308 0 1087 208 111 18 chrY 23442209 23442604 -28070980 + L1MB5 LINE L1 5254 5685 -495 936 285 32 6 chrY 23442676 23442992 -28070592 + L1MB5 LINE L1 5838 6161 -13 951 262 38 31 chrY 23444469 23444759 -28068825 + AluJo SINE Alu 1 292 -10 30 0 0 0 chrY 23445857 23445887 -28067697 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chrY 23446156 23446180 -28067404 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1511 183 7 7 chrY 23446180 23446454 -28067130 - AluSg SINE Alu -32 278 5 24 0 0 0 chrY 23446464 23446488 -28067096 + AT_rich Low_complexity Low_complexity 1 24 0 2035 133 3 0 chrY 23448498 23448806 -28064778 + AluSc SINE Alu 1 309 0 201 245 10 41 chrY 23450567 23450665 -28062919 + (CATA)n Simple_repeat Simple_repeat 2 96 0 256 161 25 25 chrY 23451116 23451152 -28062432 - L1MA7 LINE L1 -29 6262 6227 696 214 114 68 chrY 23451152 23451432 -28062152 - AluJb SINE Alu -8 294 2 256 161 25 25 chrY 23451432 23451476 -28062108 - L1MA7 LINE L1 -63 6228 6182 270 108 0 135 chrY 23451623 23451697 -28061887 + MER1B DNA MER1_type 211 274 -65 264 122 20 0 chrY 23451861 23451910 -28061674 + MER1B DNA MER1_type 271 320 -13 485 252 0 9 chrY 23451913 23452020 -28061564 - FLAM_C SINE Alu -25 118 13 377 305 119 93 chrY 23453474 23454127 -28059457 - L1M2 LINE L1 -5708 1141 472 1708 184 0 13 chrY 23456311 23456335 -28057249 - AluSx SINE Alu -7 305 282 258 32 0 0 chrY 23456335 23456366 -28057218 + (TG)n Simple_repeat Simple_repeat 2 32 0 1708 184 0 13 chrY 23456366 23456650 -28056934 - AluSx SINE Alu -30 282 1 1936 162 7 0 chrY 23458415 23458711 -28054873 - AluSx SINE Alu -14 298 1 183 42 0 0 chrY 23458711 23458735 -28054849 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1009 249 15 15 chrY 23458735 23459004 -28054580 - AluJo SINE Alu -31 281 13 470 257 129 7 chrY 23462852 23462992 -28050592 + FAM SINE Alu 2 158 -17 507 96 0 0 chrY 23462992 23463075 -28050509 + (TC)n Simple_repeat Simple_repeat 1 83 0 347 118 9 55 chrY 23463566 23463676 -28049908 + (TA)n Simple_repeat Simple_repeat 1 105 0 1150 168 88 118 chrY 23465264 23465728 -28047856 - LTR7 LTR ERV1 0 450 1 2589 64 0 0 chrY 23467095 23467406 -28046178 - AluY SINE Alu 0 311 1 937 266 4 35 chrY 23470742 23471001 -28042583 - AluJo SINE Alu -54 258 8 405 109 6 14 chrY 23471714 23471806 -28041778 - L1P5 LINE L1 -483 5668 5587 353 105 0 0 chrY 23471810 23471867 -28041717 + L1MA1 LINE L1 5725 5781 -524 1259 20 0 0 chrY 23471867 23472010 -28041574 + L1PA2 LINE L1 6006 6152 -3 3299 113 11 4 chrY 23472012 23472536 -28041048 + L1MA1 LINE L1 5769 6296 -6 23 0 0 0 chrY 23472536 23472559 -28041025 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 23472627 23472650 -28040934 + AT_rich Low_complexity Low_complexity 1 23 0 195 203 0 0 chrY 23472669 23472728 -28040856 + (CA)n Simple_repeat Simple_repeat 2 60 0 197 163 20 0 chrY 23473815 23473864 -28039720 + (TA)n Simple_repeat Simple_repeat 1 50 0 370 408 25 0 chrY 23473877 23474034 -28039550 - L2 LINE L2 -21 3251 3091 237 264 97 0 chrY 23474459 23474531 -28039053 - MIR SINE MIR -98 164 86 24 53 0 0 chrY 23475110 23475148 -28038436 + AT_rich Low_complexity Low_complexity 1 38 0 258 331 35 55 chrY 23476356 23476501 -28037083 - MIR SINE MIR -56 206 65 287 150 38 12 chrY 23476868 23476948 -28036636 + CT-rich Low_complexity Low_complexity 1 82 0 244 287 37 93 chrY 23477810 23477918 -28035666 + MER5B DNA MER1_type 5 106 -72 438 295 51 27 chrY 23478778 23479114 -28034470 + L1MC5 LINE L1 6876 7219 -742 403 275 44 11 chrY 23479252 23479434 -28034150 + L1MC5 LINE L1 7256 7443 -518 306 295 67 51 chrY 23479560 23479814 -28033770 + L1MC5 LINE L1 7667 7924 -37 258 364 93 0 chrY 23480012 23480150 -28033434 + LTR33 LTR ERVL 1 151 -370 717 313 118 6 chrY 23480150 23480482 -28033102 + LTR33 LTR ERVL 4 372 -149 241 191 0 0 chrY 23480478 23480520 -28033064 + LTR33 LTR ERVL 478 519 -2 * 5314 97 1 5 chrY 23480772 23481527 -28032057 - HERVK9 LTR ERVK -3897 2019 1268 3695 109 28 3 chrY 23481527 23482105 -28031479 - HERVK9 LTR ERVK -5324 592 1 3412 108 28 4 chrY 23482105 23482162 -28031422 - MER9 LTR ERVK 0 511 457 342 0 0 0 chrY 23482162 23482200 -28031384 + (CA)n Simple_repeat Simple_repeat 1 38 0 3412 108 28 4 chrY 23482200 23482641 -28030943 - MER9 LTR ERVK -54 457 1 186 43 0 0 chrY 23483098 23483121 -28030463 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 372 366 84 36 chrY 23484042 23484351 -28029233 + L2 LINE L2 2944 3267 -5 1465 217 11 3 chrY 23484552 23484838 -28028746 + AluJb SINE Alu 1 288 -24 1427 212 10 14 chrY 23485032 23485329 -28028255 - AluSx SINE Alu -16 296 1 297 123 0 41 chrY 23485610 23485683 -28027901 + (TA)n Simple_repeat Simple_repeat 1 70 0 235 342 114 11 chrY 23486000 23486184 -28027400 - L3 LINE CR1 -1180 397 195 21 36 0 0 chrY 23486931 23486959 -28026625 + AT_rich Low_complexity Low_complexity 1 28 0 513 243 145 38 chrY 23488230 23488465 -28025119 + MIR SINE MIR 2 261 -1 189 265 176 29 chrY 23589136 23589238 -27924346 + MIR SINE MIR 64 180 -82 564 237 27 94 chrY 23589321 23589545 -27924039 - MER46C DNA MER2_type -129 209 1 193 304 36 0 chrY 23589558 23589614 -27923970 + MIR SINE MIR 204 261 -1 1658 197 0 25 chrY 23591307 23591627 -27921957 - AluSx SINE Alu 0 312 1 1147 191 40 82 chrY 23591850 23592227 -27921357 + LTR61 LTR ERV1 235 595 0 1639 237 0 13 chrY 23592231 23592606 -27920978 + HERV3 LTR ERV1 5 374 -8052 4528 267 40 14 chrY 23592673 23593937 -27919647 + HERV3 LTR ERV1 363 1658 -6768 * 6254 270 17 16 chrY 23593935 23596613 -27916971 + HERV3 LTR ERV1 1986 4760 -3666 491 258 0 8 chrY 23596697 23596825 -27916759 + HERV3 LTR ERV1 8283 8409 -17 1736 198 71 41 chrY 23596845 23597354 -27916230 + LTR61 LTR ERV1 72 595 0 954 173 60 0 chrY 23597372 23597540 -27916044 - AluSx SINE Alu -15 295 118 17788 53 4 0 chrY 23597549 23600610 -27912974 - L1PA4 LINE L1 0 6155 3085 863 130 7 0 chrY 23600610 23600748 -27912836 - L1P LINE L1 -6007 139 1 * 2693 168 25 25 chrY 23600744 23601339 -27912245 - L1PA10 LINE L1 -184 5984 5390 804 107 16 0 chrY 23602008 23602129 -27911455 - LTR15 LTR ERV1 -16 477 355 2055 126 27 4 chrY 23602131 23602642 -27910942 - HERV15 LTR ERV1 -1093 7642 6972 200 33 0 33 chrY 23602642 23602672 -27910912 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2055 126 27 4 chrY 23602672 23602880 -27910704 - HERV15 LTR ERV1 -1763 6972 6770 442 120 13 0 chrY 23602882 23602957 -27910627 - LTR15 LTR ERV1 -417 76 1 380 309 138 20 chrY 23602969 23603215 -27910369 - L1M4 LINE L1 -5292 1250 976 21 36 0 0 chrY 23603255 23603283 -27910301 + AT_rich Low_complexity Low_complexity 1 28 0 335 315 54 8 chrY 23604257 23604387 -27909197 - L2 LINE L2 -355 2958 2823 180 0 0 0 chrY 23605046 23605066 -27908518 + (TG)n Simple_repeat Simple_repeat 1 20 0 3182 34 0 0 chrY 23605073 23605453 -27908131 - L1PA2 LINE L1 0 6155 5776 3455 17 0 0 chrY 23605453 23605864 -27907720 + L1PA2 LINE L1 5368 5778 -377 21 36 0 0 chrY 23606218 23606246 -27907338 + AT_rich Low_complexity Low_complexity 1 28 0 5165 68 5 6 chrY 23706747 23707623 -27805961 - L1PA4 LINE L1 -176 5979 5101 * 14191 96 3 34 chrY 23707612 23709810 -27803774 - L1PA4 LINE L1 -4009 2137 7 914 148 15 0 chrY 23709812 23709947 -27803637 - AluSx SINE Alu -175 137 1 197 234 39 104 chrY 23710170 23710247 -27803337 + MIR SINE MIR 153 224 -38 1915 122 4 0 chrY 23710802 23711064 -27802520 + AluY SINE Alu 47 309 -2 9609 35 0 0 chrY 23711064 23712356 -27801228 + L1P1 LINE L1 4163 5454 -701 8597 60 2 3 chrY 23712356 23714245 -27799339 + L1PA5 LINE L1 4261 6152 -2 265 289 60 0 chrY 23714740 23714823 -27798761 - L2 LINE L2 -20 3293 3206 258 106 0 0 chrY 23716378 23716425 -27797159 + (A)n Simple_repeat Simple_repeat 1 47 0 209 247 11 34 chrY 23717148 23717237 -27796347 + GA-rich Low_complexity Low_complexity 4 90 0 837 243 64 94 chrY 23719388 23719762 -27793822 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chrY 23721219 23721242 -27792342 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrY 23723244 23723265 -27790319 + AT_rich Low_complexity Low_complexity 1 21 0 328 124 5 240 chrY 23724074 23724291 -27789293 + MER53 DNA DNA 23 188 -1 2386 74 0 7 chrY 23724366 23724665 -27788919 + AluY SINE Alu 1 297 -14 225 301 0 32 chrY 23725515 23725608 -27787976 - MIR SINE MIR -49 213 124 537 322 17 13 chrY 23725973 23726203 -27787381 + L1MDa LINE L1 119 349 -6191 656 216 0 0 chrY 23726241 23726366 -27787218 + LTR4 LTR ERV1 472 596 0 29960 175 15 9 chrY 23726367 23731738 -27781846 + HERV3 LTR ERV1 1 5402 -3024 15334 159 29 15 chrY 23731740 23734512 -27779072 + HERV3 LTR ERV1 5616 8426 0 2524 203 66 7 chrY 23734512 23735073 -27778511 + LTR4 LTR ERV1 1 594 -2 190 309 100 36 chrY 23735380 23735490 -27778094 - L2 LINE L2 -27 3286 3170 1423 184 8 0 chrY 23735709 23735948 -27777636 + AluSg SINE Alu 34 274 -36 387 0 0 0 chrY 23735948 23735991 -27777593 + (TAA)n Simple_repeat Simple_repeat 2 44 0 25 31 0 0 chrY 23737517 23737549 -27776035 + AT_rich Low_complexity Low_complexity 1 32 0 1067 211 59 88 chrY 23738328 23738702 -27774882 + MLT1A1 LTR MaLR 3 365 0 1874 133 3 3 chrY 23739757 23740042 -27773542 - AluY SINE Alu 0 311 27 24 32 0 0 chrY 23742354 23742385 -27771199 + AT_rich Low_complexity Low_complexity 1 31 0 245 167 103 0 chrY 23742863 23742941 -27770643 + (CAAAT)n Simple_repeat Simple_repeat 3 88 0 277 211 42 0 chrY 23743309 23743380 -27770204 - MER53 DNA DNA -1 188 115 251 164 19 182 chrY 23743322 23743481 -27770103 + MER53 DNA DNA 25 157 -32 * 2018 186 110 7 chrY 23744699 23745104 -27768480 + MER9 LTR ERVK 1 461 -50 225 0 0 0 chrY 23745104 23745129 -27768455 + (TG)n Simple_repeat Simple_repeat 2 26 0 2018 186 110 7 chrY 23745129 23745186 -27768398 + MER9 LTR ERVK 461 511 0 8013 140 49 48 chrY 23745186 23745952 -27767632 + HERVK9 LTR ERVK 1 829 -5087 201 200 0 83 chrY 23745952 23746012 -27767572 + MER5B DNA MER1_type 55 109 -69 8013 140 49 48 chrY 23746012 23746682 -27766902 + HERVK9 LTR ERVK 829 1497 -4419 * 12359 139 37 44 chrY 23746673 23748833 -27764751 + HERVK9 LTR ERVK 3773 5916 0 2467 165 71 4 chrY 23748833 23749312 -27764272 + MER9 LTR ERVK 1 511 0 992 223 17 52 chrY 23749513 23749858 -27763726 + L1MDa LINE L1 65 397 -6143 1688 173 17 7 chrY 23749962 23750257 -27763327 - AluSp SINE Alu -15 298 1 1228 278 65 43 chrY 23750596 23751401 -27762183 + L1M4 LINE L1 4383 5204 -942 636 192 149 48 chrY 23751405 23751613 -27761971 + MER52C LTR ERV1 890 1118 -160 1660 189 22 6 chrY 23751649 23751966 -27761618 - LTR22 LTR ERVK -4 576 255 571 159 35 0 chrY 23751983 23752096 -27761488 - LTR22 LTR ERVK -463 117 1 * 871 219 18 0 chrY 23752096 23752258 -27761326 + MER52C LTR ERV1 1114 1278 0 419 340 82 39 chrY 23752281 23752560 -27761024 - L1MDa LINE L1 -5469 1071 781 * 1156 299 74 21 chrY 23752540 23753052 -27760532 - L1MDa LINE L1 -5967 573 35 1468 204 36 0 chrY 23753620 23753899 -27759685 - AluSx SINE Alu -23 289 1 38940 89 2 3 chrY 23754477 23760618 -27752966 + L1PA5 LINE L1 11 6145 -9 259 194 42 0 chrY 23760618 23760838 -27752746 + (TA)n Simple_repeat Simple_repeat 1 229 0 183 200 18 27 chrY 23760868 23760978 -27752606 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 297 0 0 0 chrY 23761226 23761259 -27752325 + (TG)n Simple_repeat Simple_repeat 2 34 0 1397 224 21 0 chrY 23761705 23761991 -27751593 + AluSx SINE Alu 5 296 -16 23 78 0 0 chrY 23762585 23762636 -27750948 + AT_rich Low_complexity Low_complexity 1 51 0 2709 26 0 0 chrY 23762918 23763221 -27750363 + AluY SINE Alu 1 303 -8 22 35 0 0 chrY 23763847 23763876 -27749708 + AT_rich Low_complexity Low_complexity 1 29 0 661 273 36 0 chrY 23763973 23764167 -27749417 + MER2 DNA MER2_type 7 207 -138 219 288 62 0 chrY 23764440 23764520 -27749064 - MIR SINE MIR -1 261 177 1171 189 9 0 chrY 23764525 23764737 -27748847 - AluSq SINE Alu -19 294 81 21 36 0 0 chrY 23765610 23765638 -27747946 + AT_rich Low_complexity Low_complexity 1 28 0 379 270 40 10 chrY 23765641 23765741 -27747843 - AluJ SINE Alu -2 300 198 2001 261 8 4 chrY 23765754 23766236 -27747348 + MER1A DNA MER1_type 28 511 -18 210 160 0 0 chrY 23766738 23766788 -27746796 + (TG)n Simple_repeat Simple_repeat 1 50 0 763 282 20 5 chrY 23766837 23767039 -27746545 - AluJ SINE Alu -107 205 1 25 51 0 0 chrY 23767163 23767202 -27746382 + AT_rich Low_complexity Low_complexity 1 39 0 383 266 11 21 chrY 23767439 23767533 -27746051 - AluJb SINE Alu -121 181 89 29 70 0 0 chrY 23772366 23772423 -27741161 + AT_rich Low_complexity Low_complexity 1 57 0 898 250 108 4 chrY 23772523 23772755 -27740829 + AluSp SINE Alu 1 256 -57 36 40 0 0 chrY 23772935 23772985 -27740599 + AT_rich Low_complexity Low_complexity 1 50 0 1699 180 0 27 chrY 23773125 23773299 -27740285 - AluSq SINE Alu -20 293 129 309 51 0 0 chrY 23773299 23773338 -27740246 + (TG)n Simple_repeat Simple_repeat 2 40 0 1699 180 0 27 chrY 23773338 23773463 -27740121 - AluSq SINE Alu -184 129 2 512 208 264 0 chrY 23773772 23773897 -27739687 + AluSq SINE Alu 137 294 -19 2432 272 19 7 chrY 23774092 23774676 -27738908 - MER52A LTR ERV1 -4 1751 1161 505 127 0 0 chrY 23774677 23774756 -27738828 + HERVL LTR ERVL 710 788 -4866 1943 96 9 68 chrY 23775151 23775475 -27738109 - AluY SINE Alu -6 305 1 282 262 0 0 chrY 23775723 23775784 -27737800 - MER20 DNA MER1_type -69 150 90 351 333 45 50 chrY 23775815 23776016 -27737568 + L2 LINE L2 2763 2962 -352 522 40 27 0 chrY 23776101 23776175 -27737409 - L1PA6 LINE L1 -1 6153 6078 21 89 0 0 chrY 23777164 23777220 -27736364 + AT_rich Low_complexity Low_complexity 1 56 0 305 255 112 27 chrY 23777332 23777520 -27736064 + L1M4c LINE L1 2295 2498 -3886 1496 245 90 24 chrY 23777638 23777676 -27735908 + L1M4 LINE L1 1295 1329 -5317 1678 174 11 0 chrY 23777676 23777940 -27735644 + AluSc SINE Alu 21 287 -22 1496 245 90 24 chrY 23777940 23778632 -27734952 + L1M4 LINE L1 1329 2078 -4568 784 336 27 5 chrY 23779666 23780029 -27733555 - MER52A LTR ERV1 -506 1249 923 1467 218 10 0 chrY 23780134 23780469 -27733115 + AluSp SINE Alu 2 339 0 250 223 10 32 chrY 23780554 23780867 -27732717 + (CCCTAA)n Simple_repeat Simple_repeat 1 305 0 260 224 10 0 chrY 23780966 23781064 -27732520 + (CCCTAA)n Simple_repeat Simple_repeat 1 99 0 289 182 15 23 chrY 23781134 23781266 -27732318 + (CCCTAA)n Simple_repeat Simple_repeat 4 134 0 345 168 0 48 chrY 23781301 23781468 -27732116 + (CCCTAA)n Simple_repeat Simple_repeat 6 164 0 333 210 18 18 chrY 23781531 23781698 -27731886 + (CCCTAA)n Simple_repeat Simple_repeat 6 172 0 803 315 54 14 chrY 23782014 23782586 -27730998 + L1M4 LINE L1 4303 4897 -1747 6256 30 0 0 chrY 23783234 23783967 -27729617 + L1PA3 LINE L1 5423 6155 0 1006 229 97 8 chrY 23784244 23784511 -27729073 + AluJo SINE Alu 19 309 -3 306 250 42 0 chrY 23784784 23784880 -27728704 + MER31-int LTR ERV1 3521 3620 -1316 2293 161 28 90 chrY 23784886 23785502 -27728082 + MER4B LTR ERV1 9 754 -25 313 296 24 29 chrY 23786552 23786758 -27726826 + L1M4 LINE L1 4305 4509 -1637 910 231 107 12 chrY 23786760 23787002 -27726582 + AluJo SINE Alu 1 265 -47 418 293 132 22 chrY 23787165 23787574 -27726010 + L1M4 LINE L1 4728 5181 -965 1383 212 0 18 chrY 23787586 23787869 -27725715 + AluSx SINE Alu 5 282 -30 1084 73 0 0 chrY 23787869 23788005 -27725579 + AluY SINE Alu 166 301 -10 356 212 99 13 chrY 23788007 23788180 -27725404 + L1M4 LINE L1 5197 5381 -765 5547 116 25 7 chrY 23788700 23790002 -27723582 - L1PA8 LINE L1 -6 6166 4826 1466 216 9 23 chrY 23790017 23790365 -27723219 - L1P LINE L1 -3793 2353 2011 192 40 0 0 chrY 23790365 23790390 -27723194 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 642 209 0 39 chrY 23790391 23790544 -27723040 - AluJo/FRAM SINE Alu -19 283 137 396 107 0 0 chrY 23790544 23790600 -27722984 - AluY SINE Alu -166 135 80 * 1821 145 33 33 chrY 23790597 23790929 -27722655 + LTR22B LTR ERVK 127 458 -34 346 269 46 15 chrY 23791127 23791257 -27722327 + L1MC3 LINE L1 5885 6018 -1767 1742 174 3 10 chrY 23791384 23791688 -27721896 + AluY SINE Alu 1 302 -9 563 167 9 9 chrY 23791790 23791904 -27721680 - L1MB3 LINE L1 -2 6181 6068 744 176 60 55 chrY 23791904 23792086 -27721498 - L1MB3 LINE L1 -621 5553 5371 2600 240 48 9 chrY 23792098 23793021 -27720563 + L1MB5 LINE L1 5083 6038 -136 1974 241 58 60 chrY 23793190 23793925 -27719659 - MER50 LTR ERV1 0 734 1 748 254 56 68 chrY 23794710 23795119 -27718465 + L1ME1 LINE L1 5584 5987 -179 229 305 12 12 chrY 23796379 23796461 -27717123 + HAL1 LINE L1 1828 1909 -598 442 44 0 77 chrY 23796511 23796602 -27716982 + (TTTAA)n Simple_repeat Simple_repeat 3 86 0 23 33 0 0 chrY 23797019 23797049 -27716535 + AT_rich Low_complexity Low_complexity 1 30 0 244 288 181 54 chrY 23797923 23798128 -27715456 - MIR SINE MIR -1 261 31 4361 101 2 0 chrY 23799010 23799596 -27713988 + LTR14C LTR ERVK 1 587 0 390 123 0 0 chrY 23799843 23799908 -27713676 + Alu SINE Alu 237 301 -1 31982 134 8 18 chrY 23799945 23805824 -27707760 + L1PA6 LINE L1 11 5828 -326 21 57 0 0 chrY 23805832 23805867 -27707717 + AT_rich Low_complexity Low_complexity 1 35 0 780 249 145 8 chrY 23806053 23806294 -27707290 - AluJo SINE Alu -28 284 11 1526 285 83 24 chrY 23806295 23807486 -27706098 - L1M4c LINE L1 -4493 2153 858 216 179 0 0 chrY 23807504 23807543 -27706041 + A-rich Low_complexity Low_complexity 2 40 0 752 263 49 15 chrY 23807686 23807891 -27705693 + AluJb SINE Alu 3 214 -98 390 210 110 20 chrY 23807898 23807998 -27705586 + AluJb SINE Alu 174 282 -20 342 294 102 61 chrY 23808034 23808279 -27705305 - L1M4c LINE L1 -5939 603 349 1643 190 3 0 chrY 23808498 23808782 -27704802 - AluSx SINE Alu -25 287 3 40782 52 26 1 chrY 23808866 23814852 -27698732 + L1PA3 LINE L1 13 6147 -8 45 75 0 0 chrY 23815374 23815468 -27698116 + AT_rich Low_complexity Low_complexity 1 94 0 794 221 42 21 chrY 23816332 23816522 -27697062 + AluJo SINE Alu 119 312 0 235 280 0 0 chrY 23816522 23816572 -27697012 + polypurine Low_complexity Low_complexity 3 52 0 1261 211 17 0 chrY 23816984 23817221 -27696363 + AluSx SINE Alu 1 241 -71 22 35 0 0 chrY 23817236 23817265 -27696319 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chrY 23817669 23817701 -27695883 + AT_rich Low_complexity Low_complexity 1 32 0 919 211 49 84 chrY 23817701 23817873 -27695711 - L1MA7 LINE L1 0 6291 6135 1590 193 7 0 chrY 23817873 23818158 -27695426 - AluSq SINE Alu -23 290 4 919 211 49 84 chrY 23818158 23818331 -27695253 - L1MA7 LINE L1 -156 6135 5958 570 301 0 0 chrY 23818356 23818502 -27695082 - FRAM SINE Alu -30 146 1 1695 199 10 34 chrY 23818517 23818904 -27694680 - L1MA7 LINE L1 -339 5952 5575 821 200 57 54 chrY 23818901 23819108 -27694476 + L1M2 LINE L1 5097 5307 -839 * 234 0 0 0 chrY 23819108 23819134 -27694450 + (CAA)n Simple_repeat Simple_repeat 2 27 0 821 200 57 54 chrY 23819134 23819206 -27694378 + L1M2 LINE L1 5307 5377 -769 333 102 0 0 chrY 23819220 23819279 -27694305 + (ATTG)n Simple_repeat Simple_repeat 2 60 0 740 217 21 0 chrY 23819289 23819432 -27694152 - AluSg/x SINE Alu -39 273 128 934 203 0 6 chrY 23819439 23819621 -27693963 + L1M2 LINE L1 5379 5559 -753 23 68 0 0 chrY 23821066 23821110 -27692474 + AT_rich Low_complexity Low_complexity 1 44 0 197 358 22 56 chrY 23821385 23821564 -27692020 - L2 LINE L2 -682 2632 2460 475 285 224 0 chrY 23822048 23822213 -27691371 + AluSp SINE Alu 1 202 -111 919 281 94 43 chrY 23822622 23823153 -27690431 + L1M1 LINE L1 1967 2548 -5017 1462 227 3 7 chrY 23823153 23823472 -27690112 + AluSq SINE Alu 1 313 0 919 281 94 43 chrY 23823472 23823686 -27689898 + L1M1 LINE L1 2548 2750 -4815 1465 238 119 20 chrY 23823724 23824337 -27689247 + L1M1 LINE L1 3894 4567 -2998 675 226 79 97 chrY 23824362 23824703 -27688881 + L1M1 LINE L1 4876 5210 -2355 4701 96 14 0 chrY 23824703 23825347 -27688237 + HERVK11 LTR ERVK 6113 6765 -1188 * 5834 86 18 0 chrY 23825334 23826116 -27687468 + HERVK11 LTR ERVK 6957 7752 -201 730 90 10 0 chrY 23826116 23826216 -27687368 + HERVK11 LTR ERVK 7853 7953 0 6788 129 7 18 chrY 23826216 23827299 -27686285 + MER11C LTR ERVK 1 1071 0 3572 214 79 41 chrY 23827299 23828474 -27685110 + L1M1 LINE L1 5206 6425 -1140 422 304 80 0 chrY 23828481 23828619 -27684965 + FAM SINE Alu 8 156 -29 598 249 100 20 chrY 23828650 23829000 -27684584 + L1M1 LINE L1 6420 6797 -768 219 36 0 0 chrY 23829001 23829029 -27684555 + (TG)n Simple_repeat Simple_repeat 1 28 0 350 85 17 0 chrY 23829064 23829123 -27684461 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1348 188 9 0 chrY 23829145 23829369 -27684215 - AluSq SINE Alu -87 226 1 1664 167 11 0 chrY 23829433 23829702 -27683882 + AluSg SINE Alu 1 272 -38 21 36 0 0 chrY 23832822 23832850 -27680734 + AT_rich Low_complexity Low_complexity 1 28 0 1114 227 54 4 chrY 23832867 23833145 -27680439 - AluJb SINE Alu -10 292 1 637 328 106 11 chrY 23833197 23833648 -27679936 + L2 LINE L2 2163 2656 -658 433 305 29 0 chrY 23833680 23833854 -27679730 - L1MB7 LINE L1 -21 6163 5985 188 227 23 0 chrY 23834124 23834168 -27679416 + L2 LINE L2 3191 3235 -78 21 36 0 0 chrY 23834218 23834246 -27679338 + AT_rich Low_complexity Low_complexity 1 28 0 826 171 48 88 chrY 23834266 23834494 -27679090 - AluSg SINE Alu -28 282 64 16005 44 1 0 chrY 23834687 23836669 -27676915 - L1PA3 LINE L1 -805 5341 3358 6472 56 1 0 chrY 23836669 23837483 -27676101 + L1PA3 LINE L1 5336 6152 -3 21 0 0 0 chrY 23837483 23837504 -27676080 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chrY 23838577 23838604 -27674980 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chrY 23840161 23840191 -27673393 + AT_rich Low_complexity Low_complexity 1 30 0 1090 265 20 36 chrY 23840585 23841030 -27672554 + L1MA4 LINE L1 5862 6299 -1 302 207 17 0 chrY 23841603 23841661 -27671923 + MER4B-int LTR ERV1 5153 5211 -1547 246 105 0 0 chrY 23841738 23841776 -27671808 + (T)n Simple_repeat Simple_repeat 1 38 0 2525 14 0 0 chrY 23841777 23842065 -27671519 - L1PA2 LINE L1 -2 6153 5866 676 56 0 19 chrY 23842065 23842169 -27671415 + L1PA2 LINE L1 5782 5881 -273 767 297 126 34 chrY 23842347 23842849 -27670735 + MER4B-int LTR ERV1 2633 3180 -1011 25 31 0 0 chrY 23842854 23842886 -27670698 + AT_rich Low_complexity Low_complexity 1 32 0 1540 200 10 7 chrY 23843478 23843773 -27669811 + AluSg SINE Alu 1 296 -14 249 83 0 0 chrY 23843773 23843809 -27669775 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 906 137 0 22 chrY 23843835 23844017 -27669567 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 21 0 0 0 chrY 23844289 23844310 -27669274 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrY 23844484 23844511 -27669073 + AT_rich Low_complexity Low_complexity 1 27 0 1077 147 0 0 chrY 23845201 23845358 -27668226 - U1 snRNA snRNA -6 159 3 203 374 128 5 chrY 23845724 23845943 -27667641 - MIR SINE MIR 0 262 17 486 282 0 47 chrY 23846056 23846205 -27667379 - FRAM SINE Alu -35 141 1 21 0 0 0 chrY 23846656 23846677 -27666907 + AT_rich Low_complexity Low_complexity 1 21 0 265 230 162 0 chrY 23846925 23846999 -27666585 + L2 LINE L2 3220 3305 -8 1329 162 0 0 chrY 23847721 23847925 -27665659 + AluSg/x SINE Alu 77 280 -29 291 54 0 0 chrY 23847940 23847977 -27665607 + (TAA)n Simple_repeat Simple_repeat 3 39 0 300 311 64 54 chrY 23848829 23849125 -27664459 + MER46C DNA MER2_type 1 299 -39 26 0 0 0 chrY 23849281 23849307 -27664277 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chrY 23849452 23849473 -27664111 + AT_rich Low_complexity Low_complexity 1 21 0 239 333 53 38 chrY 23850014 23850146 -27663438 - MER5B DNA MER1_type -1 177 44 750 184 0 7 chrY 23850165 23850301 -27663283 + AluY SINE Alu 1 135 -176 248 196 0 0 chrY 23850302 23850353 -27663231 + L1MC4 LINE L1 6652 6702 -1340 327 300 22 0 chrY 23850353 23850443 -27663141 + L1MC4 LINE L1 6613 6704 -1338 522 147 21 0 chrY 23850447 23850542 -27663042 + AluSc SINE Alu 209 305 -4 22 0 0 0 chrY 23850765 23850787 -27662797 + AT_rich Low_complexity Low_complexity 1 22 0 660 183 0 0 chrY 23851577 23851692 -27661892 + LTR19B LTR ERV1 1 115 -465 * 1620 194 55 0 chrY 23851685 23852010 -27661574 + LTR19B LTR ERV1 238 580 0 3232 181 33 21 chrY 23852010 23852623 -27660961 + HERVFH19I LTR ERV1 1 620 -7099 372 193 12 0 chrY 23852802 23852885 -27660699 + HERVFH19I LTR ERV1 1841 1924 -3293 7366 163 53 15 chrY 23852885 23854314 -27659270 + L1P3 LINE L1 356 1828 -4633 1762 153 7 17 chrY 23854314 23854608 -27658976 - AluSg SINE Alu -19 291 1 2232 113 3 3 chrY 23855033 23855343 -27658241 + AluY SINE Alu 1 310 -1 2735 10 0 3 chrY 23857617 23857918 -27655666 + AluYa5 SINE Alu 1 300 -11 308 188 78 16 chrY 23859459 23859523 -27654061 - AluS SINE Alu -232 70 3 1447 210 8 0 chrY 23860114 23860381 -27653203 + AluSq SINE Alu 8 276 -37 36264 80 3 1 chrY 23860536 23865394 -27648190 + L1PA4 LINE L1 1 4870 -1276 7064 55 5 0 chrY 23865448 23866727 -27646857 + L1PA4 LINE L1 4873 6154 -1 26 30 0 0 chrY 23867946 23867979 -27645605 + AT_rich Low_complexity Low_complexity 1 33 0 1159 242 106 26 chrY 23867986 23868411 -27645173 + MLT1C LTR MaLR 2 460 -7 728 205 9 105 chrY 23870586 23870796 -27642788 + AluJb SINE Alu 4 193 -119 201 39 0 0 chrY 23870838 23870864 -27642720 + (CAA)n Simple_repeat Simple_repeat 2 27 0 205 323 71 20 chrY 23871028 23871127 -27642457 + MIR SINE MIR 30 133 -75 232 266 0 31 chrY 23871161 23871225 -27642359 + L2 LINE L2 3251 3312 -1 361 283 58 7 chrY 23871567 23871705 -27641879 + MER58B DNA MER1_type 189 333 -8 191 133 22 0 chrY 23871989 23872034 -27641550 + (TG)n Simple_repeat Simple_repeat 1 46 0 430 202 256 24 chrY 23872472 23872640 -27640944 + MER3 DNA MER1_type 3 209 0 1386 198 0 4 chrY 23872662 23872909 -27640675 - AluSx SINE Alu -66 246 1 1350 281 48 20 chrY 23873248 23873703 -27639881 + MLT1D LTR MaLR 21 488 -17 706 244 85 5 chrY 23874483 23874684 -27638900 + MER20 DNA MER1_type 3 219 0 585 151 40 0 chrY 23876872 23876998 -27636586 + CT-rich Low_complexity Low_complexity 3 133 0 34039 82 8 7 chrY 23877264 23882785 -27630799 - L1PA5 LINE L1 -6 6148 623 634 126 0 0 chrY 23882785 23882880 -27630704 - L1PA5 LINE L1 -6050 96 2 20891 108 16 4 chrY 23882881 23885919 -27627665 - L1P LINE L1 -3059 3087 12 1093 222 5 0 chrY 23886493 23886714 -27626870 - L1MC1 LINE L1 -8 6325 6104 1487 209 17 7 chrY 23886804 23887091 -27626493 - AluSx SINE Alu -22 290 1 628 278 33 0 chrY 23887203 23887354 -27626230 - AluSg/x SINE Alu -36 274 119 213 39 0 0 chrY 23888808 23888834 -27624750 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 639 264 115 0 chrY 23889020 23889202 -27624382 + MER3 DNA MER1_type 3 205 -4 1310 251 0 0 chrY 23889294 23889577 -27624007 + AluSx SINE Alu 1 283 -29 1022 133 6 0 chrY 23889585 23889758 -27623826 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 2486 131 15 61 chrY 23889809 23890268 -27623316 - LTR22B LTR ERVK -50 442 5 764 237 37 18 chrY 23890840 23891212 -27622372 + L1M4 LINE L1 4775 5202 -944 344 216 235 26 chrY 23891220 23891373 -27622211 + L1MC3 LINE L1 6097 6281 -1504 331 305 93 42 chrY 23891704 23892155 -27621429 - L1MC1 LINE L1 -2037 5771 5271 689 203 0 30 chrY 23892364 23892497 -27621087 + FLAM_C SINE Alu 3 131 -2 189 0 0 0 chrY 23892497 23892518 -27621066 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 305 259 76 87 chrY 23892554 23892739 -27620845 - L1MC4 LINE L1 -18 8024 7842 399 303 115 59 chrY 23894812 23895116 -27618468 + L2 LINE L2 2941 3261 -11 1251 243 36 4 chrY 23895344 23895624 -27617960 + AluJb SINE Alu 1 289 -23 1698 177 7 14 chrY 23895769 23896063 -27617521 - AluSq SINE Alu -21 292 1 1697 190 7 0 chrY 23896192 23896466 -27617118 - AluSg1 SINE Alu -22 287 12 286 331 166 6 chrY 23896989 23897152 -27616432 - L3 LINE CR1 -1195 382 194 183 80 0 0 chrY 23897500 23897525 -27616059 + (T)n Simple_repeat Simple_repeat 1 25 0 4587 30 0 0 chrY 23897525 23898065 -27615519 - L1PA3 LINE L1 0 6155 5616 444 267 25 17 chrY 23898313 23898433 -27615151 - FLAM_C SINE Alu -11 122 2 1822 167 10 3 chrY 23898553 23898852 -27614732 - AluSp SINE Alu -12 301 1 30 27 0 0 chrY 23901358 23901395 -27612189 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chrY 23901419 23901443 -27612141 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chrY 23901648 23901689 -27611895 + AT_rich Low_complexity Low_complexity 1 41 0 182 312 212 18 chrY 23902635 23902805 -27610779 + MIR SINE MIR 54 256 -6 24 32 0 0 chrY 23902982 23903013 -27610571 + AT_rich Low_complexity Low_complexity 1 31 0 1300 245 0 26 chrY 23903110 23903287 -27610297 - AluSx SINE Alu -14 298 131 1559 217 3 10 chrY 23903287 23903601 -27609983 - AluSx SINE Alu 0 312 1 1300 245 0 26 chrY 23903601 23903729 -27609855 - AluSx SINE Alu -181 131 1 573 250 100 20 chrY 23904366 23904881 -27608703 - L1MC/D LINE L1 -748 5398 5017 5333 189 17 39 chrY 23904931 23906074 -27607510 + L1PA7 LINE L1 5 1121 -5340 14810 142 23 8 chrY 23906076 23909523 -27604061 + L1PA7 LINE L1 2892 6390 -79 534 108 0 0 chrY 23909532 23909615 -27603969 - L1P LINE L1 -729 5425 5343 * 716 193 19 0 chrY 23909614 23909775 -27603809 + L1P4 LINE L1 5336 5499 -669 21 0 0 0 chrY 23910401 23910422 -27603162 + AT_rich Low_complexity Low_complexity 1 21 0 2048 245 87 7 chrY 23910801 23911706 -27601878 - L1M4 LINE L1 -753 5393 4416 495 295 7 7 chrY 23911744 23911893 -27601691 - AluJo SINE Alu -46 266 118 893 57 16 0 chrY 23912185 23912308 -27601276 + (TTTC)n Simple_repeat Simple_repeat 3 127 0 541 273 114 36 chrY 23912308 23912528 -27601056 - AluJb SINE Alu -32 280 44 22 0 0 0 chrY 23913014 23913036 -27600548 + AT_rich Low_complexity Low_complexity 1 22 0 323 264 24 22 chrY 23913591 23913658 -27599926 - L1M4 LINE L1 -1760 4386 4321 1464 199 21 0 chrY 23913658 23913945 -27599639 + AluSp SINE Alu 1 293 -20 323 264 24 22 chrY 23913945 23914070 -27599514 - L1M4 LINE L1 -1825 4321 4182 297 0 0 0 chrY 23914084 23914117 -27599467 + (TG)n Simple_repeat Simple_repeat 2 34 0 330 314 77 66 chrY 23914128 23914596 -27598988 - L1M4 LINE L1 -1998 4148 3676 384 238 4 33 chrY 23914842 23915394 -27598190 + (TTAGGG)n Simple_repeat Simple_repeat 1 535 0 241 208 0 52 chrY 23915538 23915615 -27597969 + (TTAGGG)n Simple_repeat Simple_repeat 3 75 0 189 189 0 49 chrY 23915631 23915753 -27597831 + (TTAGGG)n Simple_repeat Simple_repeat 5 120 0 7322 68 10 0 chrY 23916112 23917128 -27596456 - L1P LINE L1 -1754 4392 3367 2347 31 0 7 chrY 23918566 23918854 -27594730 + L1PA2 LINE L1 5869 6154 -1 1121 63 6 6 chrY 23918854 23919028 -27594556 + L1P LINE L1 3079 3252 -2894 201 74 0 0 chrY 23919867 23919894 -27593690 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 630 261 68 10 chrY 23920090 23920297 -27593287 + MER20 DNA MER1_type 1 219 0 2781 10 0 0 chrY 23920957 23921289 -27592295 + AluYb8 SINE Alu 1 332 0 257 29 57 0 chrY 23922785 23922820 -27590764 - tRNA-Asp-GAC tRNA tRNA -38 37 1 302 256 16 74 chrY 23922855 23922951 -27590633 + L1ME LINE L1 5616 5705 -416 2162 104 7 13 chrY 23922951 23923250 -27590334 - AluSx SINE Alu -15 297 1 302 256 16 74 chrY 23923250 23923274 -27590310 + L1ME LINE L1 5705 5729 -392 240 224 66 0 chrY 23924430 23924506 -27589078 + G-rich Low_complexity Low_complexity 3 83 0 383 274 111 8 chrY 23925553 23925670 -27587914 - L2 LINE L2 -1 3312 3184 308 289 60 18 chrY 23925910 23926076 -27587508 + L1MEd LINE L1 14 186 -5933 254 205 26 51 chrY 23926121 23926199 -27587385 - MER81 DNA DNA 0 114 39 238 314 92 94 chrY 23926265 23926647 -27586937 + L1MEd LINE L1 269 649 -5470 408 246 191 13 chrY 23927179 23927450 -27586134 - L1M1 LINE L1 -867 3059 2781 1512 199 0 7 chrY 23928351 23928628 -27584956 + AluSx SINE Alu 15 289 -23 72 32 0 0 chrY 23928697 23928790 -27584794 + AT_rich Low_complexity Low_complexity 1 93 0 434 264 39 54 chrY 23928794 23928923 -27584661 + MER5B DNA MER1_type 46 172 -6 380 258 274 0 chrY 23928963 23929087 -27584497 + MER5A DNA MER1_type 16 173 -16 954 293 63 33 chrY 23929184 23929611 -27583973 + LTR67 LTR ERVL 112 551 -6 924 266 72 0 chrY 23930349 23930571 -27583013 - MIR SINE MIR -22 240 3 1348 233 20 39 chrY 23930693 23931135 -27582449 + MLT1A1 LTR MaLR 3 363 -2 1901 159 51 22 chrY 23931139 23931510 -27582074 + MLT1A1-int LTR MaLR 6 387 -1348 782 186 8 0 chrY 23932410 23932539 -27581045 - FLAM_A SINE Alu -2 131 2 567 305 54 36 chrY 23932597 23933098 -27580486 - L1ME LINE L1 -363 5807 5298 216 86 0 0 chrY 23933132 23933167 -27580417 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2063 127 0 0 chrY 23933169 23933460 -27580124 - AluSx SINE Alu -21 291 1 6749 140 130 37 chrY 23934243 23935608 -27577976 - THE1C-int LTR MaLR -87 1493 1 1906 158 32 27 chrY 23935608 23935981 -27577603 - THE1C LTR MaLR 0 375 1 1026 178 5 61 chrY 23935981 23936195 -27577389 + AluJo SINE Alu 106 307 -5 2064 127 0 0 chrY 23937147 23937475 -27576109 + AluSx SINE Alu 1 328 0 567 305 54 36 chrY 23937509 23938010 -27575574 + L1ME LINE L1 5298 5807 -363 782 186 8 0 chrY 23938068 23938197 -27575387 + FLAM_A SINE Alu 2 131 -2 1901 159 51 22 chrY 23939097 23939468 -27574116 - MLT1A1-int LTR MaLR -1348 387 6 1348 233 20 39 chrY 23939472 23939914 -27573670 - MLT1A1 LTR MaLR -2 406 3 924 266 72 0 chrY 23940036 23940258 -27573326 + MIR SINE MIR 3 240 -22 954 293 63 33 chrY 23940996 23941423 -27572161 - LTR67 LTR ERVL -6 551 112 380 258 274 0 chrY 23941520 23941644 -27571940 - MER5A DNA MER1_type -16 173 16 434 264 39 54 chrY 23941684 23941813 -27571771 - MER5B DNA MER1_type -6 172 46 72 32 0 0 chrY 23941817 23941910 -27571674 + AT_rich Low_complexity Low_complexity 1 93 0 1512 199 0 7 chrY 23941979 23942256 -27571328 - AluSx SINE Alu -23 289 15 408 246 191 13 chrY 23943157 23943428 -27570156 + L1M1 LINE L1 2781 3059 -867 238 314 92 94 chrY 23943960 23944342 -27569242 - L1MEd LINE L1 -5470 649 269 254 205 26 51 chrY 23944408 23944486 -27569098 + MER81 DNA DNA 39 114 0 308 289 60 18 chrY 23944531 23944697 -27568887 - L1MEd LINE L1 -5933 186 14 383 274 111 8 chrY 23944937 23945054 -27568530 + L2 LINE L2 3184 3312 -1 240 224 66 0 chrY 23946101 23946177 -27567407 + C-rich Low_complexity Low_complexity 3 83 0 2157 100 7 13 chrY 23947357 23947656 -27565928 + AluSx SINE Alu 1 297 -15 238 240 21 73 chrY 23947656 23947752 -27565832 - L1ME LINE L1 -415 5706 5616 271 29 57 0 chrY 23947787 23947822 -27565762 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 235 233 82 14 chrY 23947948 23948021 -27565563 - L1M3 LINE L1 -703 5468 5391 192 40 0 0 chrY 23949318 23949343 -27564241 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2795 10 0 0 chrY 23949345 23949650 -27563934 - AluYb8 SINE Alu -13 305 1 632 261 68 10 chrY 23950310 23950517 -27563067 - MER20 DNA MER1_type 0 219 1 201 74 0 0 chrY 23950713 23950740 -27562844 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 216 0 0 0 chrY 23951941 23951965 -27561619 + (T)n Simple_repeat Simple_repeat 1 24 0 332 323 116 66 chrY 23954267 23954663 -27558921 - L3 LINE CR1 -45 1532 1117 216 0 0 0 chrY 23956424 23956448 -27557136 + (T)n Simple_repeat Simple_repeat 1 24 0 230 341 98 24 chrY 23956958 23957081 -27556503 - L3 LINE CR1 -292 1285 1154 225 0 0 0 chrY 23958875 23958900 -27554684 + (T)n Simple_repeat Simple_repeat 1 25 0 206 396 61 24 chrY 23959357 23959521 -27554063 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 23961266 23961302 -27552282 + (T)n Simple_repeat Simple_repeat 1 36 0 187 388 66 26 chrY 23961761 23961913 -27551671 - L3 LINE CR1 -291 1286 1129 22 0 0 0 chrY 23966018 23966040 -27547544 + AT_rich Low_complexity Low_complexity 1 22 0 232 419 36 24 chrY 23966500 23966667 -27546917 - L3 LINE CR1 -292 1285 1117 42037 41 21 3 chrY 23967387 23973427 -27540157 - L1PA2 LINE L1 -1 6154 1 250 371 51 40 chrY 23973903 23974078 -27539506 - L3 LINE CR1 -292 1285 1109 34 49 0 37 chrY 23977306 23977387 -27536197 + AT_rich Low_complexity Low_complexity 1 78 0 21 71 0 0 chrY 23979107 23979149 -27534435 + AT_rich Low_complexity Low_complexity 1 42 0 1834 136 17 10 chrY 23980002 23980296 -27533288 - AluSx SINE Alu -16 296 1 2436 51 3 29 chrY 23980635 23980948 -27532636 - AluY SINE Alu -6 305 1 1980 148 0 19 chrY 23981175 23981493 -27532091 + AluJb SINE Alu 1 312 0 202 294 110 55 chrY 23981636 23981799 -27531785 + MIR3 SINE MIR 5 176 -32 2333 179 86 35 chrY 23981885 23982488 -27531096 - L1MB8 LINE L1 0 6178 5545 1521 174 38 51 chrY 23982844 23983028 -27530556 - AluJo SINE Alu 0 312 132 2401 84 0 0 chrY 23983028 23983326 -27530258 - AluY SINE Alu -13 298 1 1521 174 38 51 chrY 23983326 23983457 -27530127 - AluJo SINE Alu -180 132 1 263 254 0 0 chrY 23986999 23987058 -27526526 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chrY 23988048 23988070 -27525514 + (A)n Simple_repeat Simple_repeat 1 22 0 438 237 86 33 chrY 23989044 23989196 -27524388 - MER5A DNA MER1_type -23 166 7 25 31 0 0 chrY 23989852 23989884 -27523700 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrY 23990062 23990083 -27523501 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 23990201 23990229 -27523355 + AT_rich Low_complexity Low_complexity 1 28 0 433 270 95 0 chrY 23990335 23990483 -27523101 + MIR SINE MIR 53 214 -48 3420 144 29 15 chrY 23991103 23991721 -27521863 - L1MA4 LINE L1 -6 6294 5668 9679 184 25 104 chrY 23991721 23993264 -27520320 - L1 LINE L1 -1374 5793 4129 2331 93 0 3 chrY 23993264 23993576 -27520008 - AluY SINE Alu 0 311 1 9679 184 25 104 chrY 23993576 23994432 -27519152 - L1 LINE L1 -3038 4129 3784 297 51 0 0 chrY 23994432 23994471 -27519113 + (TA)n Simple_repeat Simple_repeat 2 40 0 9679 184 25 104 chrY 23994471 23995431 -27518153 - L1 LINE L1 -3383 3784 2749 8756 183 61 7 chrY 23995428 23996106 -27517478 - L1 LINE L1 -5247 1921 1281 * 750 109 0 0 chrY 23996106 23996234 -27517350 + (TAG)n Simple_repeat Simple_repeat 3 130 0 8756 183 61 7 chrY 23996234 23997352 -27516232 - L1 LINE L1 -5887 1281 13 405 271 101 53 chrY 23997472 23997679 -27515905 - MIR SINE MIR -18 244 28 3333 206 63 39 chrY 23997820 23998287 -27515297 - L1MB5 LINE L1 -9 6165 5711 5003 103 3 7 chrY 23998287 23998969 -27514615 - L1PA14 LINE L1 0 6161 5483 3333 206 63 39 chrY 23998969 23999766 -27513818 - L1MB5 LINE L1 -463 5711 4864 617 217 7 0 chrY 24000145 24000283 -27513301 - L1MA10 LINE L1 -4 6330 6192 1736 229 5 17 chrY 24000296 24000711 -27512873 - L1ME1 LINE L1 -179 5987 5578 452 279 31 31 chrY 24001188 24001317 -27512267 - MER5B DNA MER1_type 0 178 50 2792 199 75 21 chrY 24001340 24001871 -27511713 - L1ME2 LINE L1 -13 6151 5575 2065 141 0 3 chrY 24001871 24002176 -27511408 - AluSg SINE Alu -6 304 1 2792 199 75 21 chrY 24002176 24002306 -27511278 - L1ME2 LINE L1 -589 5575 5454 271 204 0 0 chrY 24002381 24002430 -27511154 - MER5B DNA MER1_type -129 49 1 2123 148 21 3 chrY 24003844 24004175 -27509409 + L1PB3 LINE L1 5817 6153 -1 417 286 105 54 chrY 24004820 24005040 -27508544 + L1ME4a LINE L1 5571 5815 -306 784 261 8 64 chrY 24005040 24005274 -27508310 - MER58A DNA MER1_type -3 221 1 417 286 105 54 chrY 24005274 24005385 -27508199 + L1ME4a LINE L1 5815 5919 -202 360 0 0 0 chrY 24005405 24005445 -27508139 + (TA)n Simple_repeat Simple_repeat 2 41 0 276 267 17 52 chrY 24005448 24005564 -27508020 + HAL1b LINE L1 1203 1314 -34 22 0 0 0 chrY 24005564 24005586 -27507998 + AT_rich Low_complexity Low_complexity 1 22 0 343 232 81 10 chrY 24005623 24005722 -27507862 + MER91C DNA MER1_type 3 108 -32 379 301 57 16 chrY 24005764 24005887 -27507697 - L2 LINE L2 -4 3309 3182 191 279 16 16 chrY 24006005 24006066 -27507518 - MIR SINE MIR -61 147 87 404 277 0 0 chrY 24006384 24006496 -27507088 + HAL1b LINE L1 1217 1328 -20 260 346 96 0 chrY 24006604 24006708 -27506876 + L2 LINE L2 3156 3269 -3 1643 121 17 69 chrY 24007100 24007451 -27506133 + Tigger4(Zombi) DNA MER2_type 6 2730 -1 24 0 0 0 chrY 24007973 24007997 -27505587 + AT_rich Low_complexity Low_complexity 1 24 0 779 215 30 8 chrY 24008100 24008291 -27505293 - L1MA9 LINE L1 -182 6118 5921 359 203 43 0 chrY 24008297 24008366 -27505218 - Tigger2a DNA MER2_type -2 442 371 1906 171 38 26 chrY 24008430 24008776 -27504808 - Tigger2a DNA MER2_type -72 362 13 2952 129 35 210 chrY 24008777 24009442 -27504142 - L1 LINE L1 -1342 4804 4382 867 0 0 0 chrY 24009442 24009558 -27504026 + L1PA4 LINE L1 6049 6166 0 2952 129 35 210 chrY 24009558 24009925 -27503659 - L1 LINE L1 -1764 4382 3952 5001 210 83 23 chrY 24009934 24011162 -27502422 - L1ME1 LINE L1 -9 6226 4828 465 71 0 0 chrY 24011162 24011232 -27502352 + (CA)n Simple_repeat Simple_repeat 2 71 0 5001 210 83 23 chrY 24011232 24012037 -27501547 - L1ME1 LINE L1 -1407 4828 4073 2166 165 38 36 chrY 24012037 24012588 -27500996 - MLT2A2 LTR ERVL 0 554 1 5080 232 33 47 chrY 24012588 24013106 -27500478 - L1ME1 LINE L1 -2138 4077 3553 1887 158 0 16 chrY 24013106 24013416 -27500168 - AluSx SINE Alu -1 311 7 5080 232 33 47 chrY 24013416 24013687 -27499897 - L1ME1 LINE L1 -2662 3553 3280 1854 161 0 13 chrY 24013687 24013997 -27499587 - AluSq SINE Alu -3 310 5 5080 232 33 47 chrY 24013997 24014908 -27498676 - L1ME1 LINE L1 -2935 3280 2400 698 198 69 135 chrY 24014910 24015273 -27498311 - MER76 LTR ERV 0 688 350 726 98 0 27 chrY 24015273 24015385 -27498199 + AluSg/x SINE Alu 200 308 -2 903 179 0 0 chrY 24015397 24015576 -27498008 + GA-rich Low_complexity Low_complexity 1 179 0 626 229 118 61 chrY 24015616 24015878 -27497706 - MER76 LTR ERV -393 295 19 529 174 0 20 chrY 24015961 24016059 -27497525 + AluSg1 SINE Alu 2 97 -212 1591 198 55 81 chrY 24016066 24016633 -27496951 - L1ME1 LINE L1 -3996 2400 1849 360 59 0 0 chrY 24016641 24016692 -27496892 - L1MB4 LINE L1 -1 6179 6129 4063 150 58 5 chrY 24016692 24017364 -27496220 - MER50 LTR ERV1 -26 708 1 1752 185 3 0 chrY 24017369 24017666 -27495918 - AluJb SINE Alu -9 303 6 308 296 102 9 chrY 24017676 24017784 -27495800 - MER50 LTR ERV1 -605 129 12 310 111 95 16 chrY 24017791 24017854 -27495730 - LTR8A LTR ERV1 -659 68 1 377 255 114 60 chrY 24017971 24018318 -27495266 - MLT1H LTR MaLR 0 549 66 233 290 29 14 chrY 24018896 24018965 -27494619 + L2 LINE L2 3137 3206 -66 * 527 272 64 53 chrY 24018961 24019244 -27494340 + L2 LINE L2 2472 2757 -557 367 236 123 0 chrY 24019260 24019366 -27494218 + MER63 DNA MER1_type 1 745 -317 524 241 0 6 chrY 24019368 24019538 -27494046 + CT-rich Low_complexity Low_complexity 1 169 0 296 246 167 26 chrY 24019546 24019660 -27493924 + L2 LINE L2 3180 3309 -4 329 283 20 0 chrY 24019853 24019957 -27493627 - MIR SINE MIR -59 149 38 1134 79 6 11 chrY 24020777 24020955 -27492629 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 847 182 0 26 chrY 24021028 24021182 -27492402 - AluJo SINE Alu -160 152 3 215 333 63 9 chrY 24021199 24021310 -27492274 - MIR SINE MIR -76 186 70 207 0 0 0 chrY 24021566 24021589 -27491995 + (A)n Simple_repeat Simple_repeat 1 23 0 241 275 50 50 chrY 24022479 24022559 -27491025 + MLT1J2 LTR MaLR 69 129 -321 729 184 16 40 chrY 24022837 24022962 -27490622 - FLAM_A SINE Alu -11 122 1 2412 185 43 19 chrY 24023255 24023784 -27489800 - L1MB4 LINE L1 -354 5826 5285 729 205 187 0 chrY 24023914 24024080 -27489504 - MIR SINE MIR -37 225 29 1377 279 66 16 chrY 24024100 24024599 -27488985 - MLT1L LTR MaLR -91 524 1 268 268 94 55 chrY 24025547 24025674 -27487910 + L3 LINE CR1 1423 1554 -23 606 228 7 16 chrY 24025747 24025903 -27487681 - MIR SINE MIR -59 203 46 274 227 27 27 chrY 24027001 24027076 -27486508 - MIR SINE MIR -131 131 57 323 212 0 0 chrY 24027744 24027810 -27485774 - MER116 DNA Mariner -6 74 9 1692 241 23 24 chrY 24028506 24028811 -27484773 + MER119 DNA MER1_type 1 358 -225 2299 85 0 31 chrY 24028811 24029130 -27484454 + AluY SINE Alu 1 309 -2 1692 241 23 24 chrY 24029130 24029356 -27484228 + MER119 DNA MER1_type 358 583 0 5331 158 96 95 chrY 24029362 24031187 -27482397 + pTR5 LTR ERV1 743 2438 0 36407 95 6 7 chrY 24031190 24036137 -27477447 + Harlequin LTR ERV1 1 4944 -3455 726 166 137 22 chrY 24036138 24036409 -27477175 + Harlequin LTR ERV1 840 1141 -5755 * 2681 103 11 3 chrY 24036405 24036784 -27476800 + Harlequin LTR ERV1 7501 7882 -517 * 7214 124 18 27 chrY 24036779 24038352 -27475232 + pTR5 LTR ERV1 734 2009 -429 1316 222 24 24 chrY 24038607 24038900 -27474684 + AluJo SINE Alu 1 293 -19 182 33 67 0 chrY 24039916 24039946 -27473638 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 189 107 0 0 chrY 24040261 24040289 -27473295 + (A)n Simple_repeat Simple_repeat 1 28 0 330 355 61 37 chrY 24040519 24040733 -27472851 + L2 LINE L2 2569 2787 -527 211 288 114 30 chrY 24041621 24041753 -27471831 - MIR SINE MIR -11 251 109 585 269 17 21 chrY 24042420 24043504 -27470080 + BSR/Beta Satellite Satellite 1 1079 -6 1063 280 8 33 chrY 24043558 24044107 -27469477 + BSR/Beta Satellite Satellite 1 535 -37 2374 239 70 22 chrY 24044137 24045186 -27468398 - L1M3 LINE L1 -703 5480 4394 1859 234 20 8 chrY 24045183 24045678 -27467906 + L1M3 LINE L1 3905 4405 -1741 * 1031 199 11 6 chrY 24045838 24046014 -27467570 + MER61B LTR ERV1 1 177 -248 10346 176 34 20 chrY 24046058 24049780 -27463804 + MER61B-int LTR ERV1 1454 5217 0 1772 224 9 42 chrY 24049785 24050219 -27463365 + MER61B LTR ERV1 6 425 0 427 284 31 5 chrY 24050231 24050453 -27463131 - L1M4 LINE L1 -1277 5571 5344 1325 204 0 19 chrY 24050463 24050727 -27462857 + AluJb SINE Alu 11 269 -43 255 290 30 0 chrY 24050746 24050846 -27462738 - L1M4 LINE L1 -1500 5348 5246 293 353 17 4 chrY 24050875 24051110 -27462474 - L1M4 LINE L1 -3262 3586 3349 321 244 35 128 chrY 24051116 24051589 -27461995 - L1M4 LINE L1 -2696 4152 1766 1649 191 11 0 chrY 24051916 24052199 -27461385 - AluSx SINE Alu -26 286 1 1455 252 15 61 chrY 24053106 24053563 -27460021 - LTR32 LTR ERVL -21 450 15 2833 10 0 0 chrY 24053955 24054286 -27459298 - AluYa5 SINE Alu 0 331 1 1767 164 0 11 chrY 24057025 24057306 -27456278 + AluSc SINE Alu 5 282 -27 309 109 0 0 chrY 24057306 24057352 -27456232 + (TAAG)n Simple_repeat Simple_repeat 2 47 0 1863 170 3 0 chrY 24058137 24058431 -27455153 - AluSq SINE Alu -18 295 1 23 33 0 0 chrY 24059598 24059628 -27453956 + AT_rich Low_complexity Low_complexity 1 30 0 6859 264 54 9 chrY 24059645 24060790 -27452794 + L1PA12 LINE L1 1 1093 -6488 1239 60 0 27 chrY 24060790 24060975 -27452609 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6859 264 54 9 chrY 24060975 24061042 -27452542 + L1PA12 LINE L1 1093 1156 -6425 1843 161 3 7 chrY 24061042 24061333 -27452251 - AluSp SINE Alu -21 292 3 6859 264 54 9 chrY 24061333 24062036 -27451548 + L1PA12 LINE L1 1156 2004 -5577 3379 270 164 32 chrY 24062034 24064516 -27449068 + L1PA13 LINE L1 339 3153 -3644 * 1798 179 0 0 chrY 24066329 24066625 -27446959 + AluSq SINE Alu 2 297 -16 4066 45 29 0 chrY 24066625 24067012 -27446572 + L1PA4 LINE L1 5612 6020 -152 189 0 0 0 chrY 24067012 24067033 -27446551 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 4066 45 29 0 chrY 24067033 24067191 -27446393 + L1PA4 LINE L1 6020 6172 0 234 29 0 29 chrY 24067156 24067358 -27446226 + (TAA)n Simple_repeat Simple_repeat 3 203 0 281 234 32 0 chrY 24067725 24067819 -27445765 + A-rich Low_complexity Low_complexity 4 100 0 354 329 27 14 chrY 24067888 24068180 -27445404 + L1M4c LINE L1 1370 1665 -4719 571 287 100 35 chrY 24068196 24068826 -27444758 + L1M4c LINE L1 2443 3113 -3269 1618 160 24 3 chrY 24068831 24069118 -27444466 - AluSc SINE Alu -16 293 1 520 281 46 23 chrY 24069148 24069450 -27444134 + L1 LINE L1 4524 4832 -1314 1118 278 14 9 chrY 24069461 24070588 -27442996 + BSR/Beta Satellite Satellite 1 1132 -59 602 275 13 19 chrY 24070653 24071730 -27441854 + BSR/Beta Satellite Satellite 1 1069 -6 1036 293 20 19 chrY 24071826 24072467 -27441117 + BSR/Beta Satellite Satellite 1 641 0 560 288 6 20 chrY 24072733 24073329 -27440255 + BSR/Beta Satellite Satellite 1 587 -34 413 243 48 0 chrY 24073743 24073846 -27439738 + BSR/Beta Satellite Satellite 1 108 -271 394 284 9 18 chrY 24073859 24074091 -27439493 + BSR/Beta Satellite Satellite 1 229 -6 992 293 14 22 chrY 24074187 24074743 -27438841 + BSR/Beta Satellite Satellite 1 551 -3 231 378 0 0 chrY 24074822 24074941 -27438643 + BSR/Beta Satellite Satellite 3 121 -21 508 284 19 22 chrY 24075074 24075793 -27437791 + BSR/Beta Satellite Satellite 1 716 -64 311 341 42 2 chrY 24075866 24076074 -27437510 + BSR/Beta Satellite Satellite 1 216 -7 1125 283 16 14 chrY 24076100 24076915 -27436669 + BSR/Beta Satellite Satellite 1 816 -44 1122 305 3 9 chrY 24076987 24077809 -27435775 + BSR/Beta Satellite Satellite 1 817 -35 611 281 10 18 chrY 24077854 24078773 -27434811 + BSR/Beta Satellite Satellite 1 912 -6 895 273 22 11 chrY 24078869 24079140 -27434444 + BSR/Beta Satellite Satellite 21 294 -85 522 204 4 49 chrY 24079249 24079429 -27434155 + BSR/Beta Satellite Satellite 1 171 -21 2083 239 71 19 chrY 24079436 24080461 -27433123 - L1M2 LINE L1 -743 5403 4400 301 250 9 17 chrY 24080465 24080581 -27433003 + L1 LINE L1 3905 4019 -2127 1222 184 37 7 chrY 24080615 24080886 -27432698 + MER61B-int LTR ERV1 3598 3876 -1341 4325 178 30 25 chrY 24080887 24082112 -27431472 + MER61B-int LTR ERV1 1629 5217 0 2052 218 17 9 chrY 24082112 24082534 -27431050 + MER61B LTR ERV1 1 425 0 426 294 19 9 chrY 24082559 24082773 -27430811 - L1 LINE L1 -1290 4856 4641 1180 242 3 46 chrY 24082784 24083069 -27430515 + AluJb SINE Alu 13 285 -27 478 296 6 6 chrY 24083249 24083425 -27430159 - L1MEd LINE L1 -3324 2805 2630 305 293 96 54 chrY 24083431 24083745 -27429839 - L1MEd LINE L1 -4984 1135 809 403 237 28 28 chrY 24083745 24083922 -27429662 + T-rich Low_complexity Low_complexity 2 178 0 1716 168 10 26 chrY 24084329 24084633 -27428951 - AluSx SINE Alu -11 301 3 2521 62 0 0 chrY 24084677 24084982 -27428602 + AluY SINE Alu 6 310 -1 996 269 16 47 chrY 24085836 24086156 -27427428 - LTR32 LTR ERVL -1 470 161 732 63 0 0 chrY 24086159 24086254 -27427330 + AluY SINE Alu 6 100 -211 376 263 45 45 chrY 24086317 24086473 -27427111 - LTR32 LTR ERVL -301 170 15 507 60 0 0 chrY 24088180 24088247 -27425337 + (TG)n Simple_repeat Simple_repeat 2 68 0 1818 180 0 0 chrY 24089544 24089839 -27423745 + AluY SINE Alu 1 295 -16 2114 116 3 31 chrY 24091470 24091813 -27421771 + AluSp SINE Alu 1 334 0 1741 179 3 7 chrY 24092059 24092360 -27421224 - AluSc SINE Alu -9 300 1 5560 254 9 4 chrY 24092399 24094126 -27419458 + L1PA12 LINE L1 1 2004 -5577 3947 274 149 34 chrY 24094124 24096076 -27417508 + L1PA13 LINE L1 339 2521 -4276 * 2691 155 41 46 chrY 24096076 24096683 -27416901 - MER11A LTR ERVK -2 1264 661 337 323 116 66 chrY 24097836 24098232 -27415352 - L3 LINE CR1 -45 1532 1117 297 0 0 0 chrY 24100403 24100436 -27413148 + (A)n Simple_repeat Simple_repeat 1 33 0 330 356 44 31 chrY 24100536 24100696 -27412888 - L3 LINE CR1 -299 1278 1117 216 0 0 0 chrY 24101977 24102001 -27411583 + (T)n Simple_repeat Simple_repeat 1 24 0 1173 126 11 11 chrY 24102458 24102640 -27410944 + AluSg/x SINE Alu 109 290 -22 321 231 22 22 chrY 24102643 24102734 -27410850 - L1ME LINE L1 -415 5706 5616 269 108 0 0 chrY 24102771 24102808 -27410776 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 21 0 0 0 chrY 24103259 24103280 -27410304 + AT_rich Low_complexity Low_complexity 1 21 0 616 261 68 10 chrY 24104729 24104936 -27408648 - MER20 DNA MER1_type 0 219 1 201 74 0 0 chrY 24105132 24105159 -27408425 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chrY 24106359 24106382 -27407202 + (T)n Simple_repeat Simple_repeat 1 23 0 337 323 116 66 chrY 24108684 24109080 -27404504 - L3 LINE CR1 -45 1532 1117 297 0 0 0 chrY 24111251 24111284 -27402300 + (A)n Simple_repeat Simple_repeat 1 33 0 330 356 44 31 chrY 24111384 24111544 -27402040 - L3 LINE CR1 -299 1278 1117 216 0 0 0 chrY 24112825 24112849 -27400735 + (T)n Simple_repeat Simple_repeat 1 24 0 1173 126 11 11 chrY 24113306 24113488 -27400096 + AluSg/x SINE Alu 109 290 -22 321 231 22 22 chrY 24113491 24113582 -27400002 - L1ME LINE L1 -415 5706 5616 269 108 0 0 chrY 24113619 24113656 -27399928 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 21 0 0 0 chrY 24114107 24114128 -27399456 + AT_rich Low_complexity Low_complexity 1 21 0 616 261 68 10 chrY 24115577 24115784 -27397800 - MER20 DNA MER1_type 0 219 1 201 74 0 0 chrY 24115980 24116007 -27397577 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chrY 24117207 24117230 -27396354 + (T)n Simple_repeat Simple_repeat 1 23 0 337 323 116 66 chrY 24119532 24119928 -27393656 - L3 LINE CR1 -45 1532 1117 216 0 0 0 chrY 24121689 24121713 -27391871 + (T)n Simple_repeat Simple_repeat 1 24 0 231 391 75 25 chrY 24122223 24122384 -27391200 - L3 LINE CR1 -292 1285 1117 225 0 0 0 chrY 24124140 24124165 -27389419 + (T)n Simple_repeat Simple_repeat 1 25 0 208 396 61 24 chrY 24124622 24124786 -27388798 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 24126531 24126567 -27387017 + (T)n Simple_repeat Simple_repeat 1 36 0 190 388 66 26 chrY 24127026 24127178 -27386406 - L3 LINE CR1 -291 1286 1129 208 396 61 24 chrY 24129405 24129569 -27384015 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 24131311 24131347 -27382237 + (T)n Simple_repeat Simple_repeat 1 36 0 190 388 66 26 chrY 24131806 24131958 -27381626 - L3 LINE CR1 -291 1286 1129 22 0 0 0 chrY 24136076 24136098 -27377486 + AT_rich Low_complexity Low_complexity 1 22 0 235 419 36 24 chrY 24136558 24136725 -27376859 - L3 LINE CR1 -292 1285 1117 22 0 0 0 chrY 24140833 24140855 -27372729 + AT_rich Low_complexity Low_complexity 1 22 0 235 419 36 24 chrY 24141315 24141482 -27372102 - L3 LINE CR1 -292 1285 1117 41885 40 21 3 chrY 24142202 24148243 -27365341 - L1PA2 LINE L1 -1 6154 1 251 371 51 40 chrY 24148719 24148894 -27364690 - L3 LINE CR1 -292 1285 1109 251 371 51 40 chrY 24151104 24151279 -27362305 - L3 LINE CR1 -292 1285 1109 251 371 51 40 chrY 24153489 24153664 -27359920 - L3 LINE CR1 -292 1285 1109 251 371 51 40 chrY 24155873 24156048 -27357536 - L3 LINE CR1 -292 1285 1109 251 371 51 40 chrY 24158258 24158433 -27355151 - L3 LINE CR1 -292 1285 1109 251 371 51 40 chrY 24160643 24160818 -27352766 - L3 LINE CR1 -292 1285 1109 34 49 0 37 chrY 24164046 24164127 -27349457 + AT_rich Low_complexity Low_complexity 1 78 0 180 269 124 48 chrY 24165071 24165216 -27348368 + L2 LINE L2 3148 3303 -10 21 71 0 0 chrY 24165847 24165889 -27347695 + AT_rich Low_complexity Low_complexity 1 42 0 1802 136 17 10 chrY 24166742 24167036 -27346548 - AluSx SINE Alu -16 296 1 2397 51 3 29 chrY 24167375 24167688 -27345896 - AluY SINE Alu -6 305 1 1953 148 0 19 chrY 24167915 24168233 -27345351 + AluJb SINE Alu 1 312 0 201 294 110 55 chrY 24168376 24168539 -27345045 + MIR3 SINE MIR 5 176 -32 2370 179 86 35 chrY 24168625 24169228 -27344356 - L1MB8 LINE L1 0 6178 5545 1498 174 38 51 chrY 24169584 24169768 -27343816 - AluJo SINE Alu 0 312 132 2365 84 0 0 chrY 24169768 24170066 -27343518 - AluY SINE Alu -13 298 1 1498 174 38 51 chrY 24170066 24170197 -27343387 - AluJo SINE Alu -180 132 1 263 254 0 0 chrY 24173743 24173802 -27339782 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chrY 24174792 24174814 -27338770 + (A)n Simple_repeat Simple_repeat 1 22 0 431 237 86 33 chrY 24175787 24175939 -27337645 - MER5A DNA MER1_type -23 166 7 25 31 0 0 chrY 24176595 24176627 -27336957 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrY 24176805 24176826 -27336758 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 24176944 24176972 -27336612 + AT_rich Low_complexity Low_complexity 1 28 0 432 270 95 0 chrY 24177078 24177226 -27336358 + MIR SINE MIR 53 214 -48 3412 144 29 15 chrY 24177846 24178464 -27335120 - L1MA4 LINE L1 -6 6294 5668 9856 185 25 104 chrY 24178464 24180006 -27333578 - L1 LINE L1 -1374 5793 4130 2301 93 0 3 chrY 24180006 24180318 -27333266 - AluY SINE Alu 0 311 1 9856 185 25 104 chrY 24180318 24181174 -27332410 - L1 LINE L1 -3037 4130 3783 297 51 0 0 chrY 24181174 24181213 -27332371 + (TA)n Simple_repeat Simple_repeat 1 39 0 9856 185 25 104 chrY 24181213 24182173 -27331411 - L1 LINE L1 -3384 3783 2749 9354 187 70 8 chrY 24182170 24182848 -27330736 - L1 LINE L1 -5247 1921 1287 * 750 109 0 0 chrY 24182848 24182976 -27330608 + (TAG)n Simple_repeat Simple_repeat 3 130 0 9354 187 70 8 chrY 24182976 24184094 -27329490 - L1 LINE L1 -5881 1287 13 424 271 101 53 chrY 24184214 24184421 -27329163 - MIR SINE MIR -18 244 28 3235 207 63 36 chrY 24184562 24185029 -27328555 - L1MB5 LINE L1 -9 6165 5712 4640 103 3 7 chrY 24185029 24185711 -27327873 - L1PA14 LINE L1 0 6161 5483 3235 207 63 36 chrY 24185711 24186508 -27327076 - L1MB5 LINE L1 -462 5712 4864 568 217 7 0 chrY 24186887 24187025 -27326559 - L1MA10 LINE L1 -4 6330 6192 1704 229 5 17 chrY 24187038 24187453 -27326131 - L1ME1 LINE L1 -179 5987 5578 180 363 99 0 chrY 24187586 24187677 -27325907 + L2 LINE L2 3211 3310 -3 455 279 31 31 chrY 24187930 24188059 -27325525 - MER5B DNA MER1_type 0 178 50 2692 198 75 29 chrY 24188082 24188613 -27324971 - L1ME2 LINE L1 -13 6151 5581 2029 133 0 3 chrY 24188613 24188913 -27324671 - AluSg SINE Alu -6 304 6 2692 198 75 29 chrY 24188913 24189048 -27324536 - L1ME2 LINE L1 -583 5581 5454 279 204 0 0 chrY 24189123 24189172 -27324412 - MER5B DNA MER1_type -129 49 1 1973 151 3 3 chrY 24190592 24190917 -27322667 + L1PB3 LINE L1 5829 6153 -1 382 274 111 60 chrY 24191562 24191782 -27321802 + L1ME4a LINE L1 5571 5815 -306 710 261 8 64 chrY 24191782 24192016 -27321568 - MER58A DNA MER1_type -3 221 1 382 274 111 60 chrY 24192016 24192127 -27321457 + L1ME4a LINE L1 5815 5919 -202 378 0 0 0 chrY 24192147 24192189 -27321395 + (TA)n Simple_repeat Simple_repeat 2 43 0 276 267 17 52 chrY 24192192 24192308 -27321276 + HAL1b LINE L1 1203 1314 -34 22 0 0 0 chrY 24192308 24192330 -27321254 + AT_rich Low_complexity Low_complexity 1 22 0 310 232 81 10 chrY 24192367 24192466 -27321118 + MER91C DNA MER1_type 3 108 -32 391 301 57 16 chrY 24192508 24192631 -27320953 - L2 LINE L2 -4 3309 3182 180 279 16 16 chrY 24192749 24192810 -27320774 - MIR SINE MIR -61 147 87 398 277 0 0 chrY 24193128 24193240 -27320344 + HAL1b LINE L1 1217 1328 -20 266 346 96 0 chrY 24193348 24193452 -27320132 + L2 LINE L2 3156 3269 -3 1600 121 17 69 chrY 24193844 24194195 -27319389 + Tigger4(Zombi) DNA MER2_type 6 2730 -1 24 0 0 0 chrY 24194717 24194741 -27318843 + AT_rich Low_complexity Low_complexity 1 24 0 762 203 19 0 chrY 24194877 24195035 -27318549 - L1MA9 LINE L1 -231 6081 5921 354 203 43 0 chrY 24195041 24195110 -27318474 - Tigger2a DNA MER2_type -2 442 371 1861 171 38 26 chrY 24195174 24195520 -27318064 - Tigger2a DNA MER2_type -72 362 13 2840 129 35 210 chrY 24195521 24196186 -27317398 - L1 LINE L1 -1342 4804 4382 810 0 0 0 chrY 24196186 24196302 -27317282 + L1PA4 LINE L1 6049 6166 0 2840 129 35 210 chrY 24196302 24196669 -27316915 - L1 LINE L1 -1764 4382 3952 4853 212 82 22 chrY 24196678 24197905 -27315679 - L1ME1 LINE L1 -9 6226 4828 501 68 0 0 chrY 24197905 24197979 -27315605 + (CA)n Simple_repeat Simple_repeat 2 75 0 4853 212 82 22 chrY 24197979 24198784 -27314800 - L1ME1 LINE L1 -1407 4828 4073 2176 165 38 36 chrY 24198784 24199335 -27314249 - MLT2A2 LTR ERVL 0 554 1 4943 232 33 47 chrY 24199335 24199853 -27313731 - L1ME1 LINE L1 -2138 4077 3553 1899 158 0 16 chrY 24199853 24200163 -27313421 - AluSx SINE Alu -1 311 7 4943 232 33 47 chrY 24200163 24200434 -27313150 - L1ME1 LINE L1 -2662 3553 3280 1861 161 0 13 chrY 24200434 24200744 -27312840 - AluSq SINE Alu -3 310 5 4943 232 33 47 chrY 24200744 24201655 -27311929 - L1ME1 LINE L1 -2935 3280 2400 715 198 69 135 chrY 24201657 24202021 -27311563 - MER76 LTR ERV 0 688 349 692 84 0 28 chrY 24202027 24202134 -27311450 + AluSg/x SINE Alu 207 310 0 903 179 0 0 chrY 24202144 24202323 -27311261 + GA-rich Low_complexity Low_complexity 1 179 0 642 225 118 61 chrY 24202363 24202625 -27310959 - MER76 LTR ERV -393 295 19 493 174 0 20 chrY 24202708 24202806 -27310778 + AluSg1 SINE Alu 2 97 -212 1544 198 55 81 chrY 24202813 24203380 -27310204 - L1ME1 LINE L1 -3996 2400 1849 349 59 0 0 chrY 24203388 24203439 -27310145 - L1MB4 LINE L1 -1 6179 6129 4079 150 58 5 chrY 24203439 24204111 -27309473 - MER50 LTR ERV1 -26 708 1 1764 185 3 0 chrY 24204116 24204413 -27309171 - AluJb SINE Alu -9 303 6 303 296 102 9 chrY 24204423 24204531 -27309053 - MER50 LTR ERV1 -605 129 12 305 111 95 16 chrY 24204538 24204601 -27308983 - LTR8A LTR ERV1 -659 68 1 381 224 19 109 chrY 24204718 24204874 -27308710 - MLT1H LTR MaLR 0 549 401 343 286 39 39 chrY 24204911 24205065 -27308519 - MLT1H LTR MaLR -330 219 66 209 290 29 14 chrY 24205643 24205712 -27307872 + L2 LINE L2 3137 3206 -66 * 451 276 64 53 chrY 24205708 24205991 -27307593 + L2 LINE L2 2472 2757 -557 362 236 123 0 chrY 24206007 24206113 -27307471 + MER63 DNA MER1_type 1 745 -317 524 241 0 6 chrY 24206115 24206285 -27307299 + CT-rich Low_complexity Low_complexity 1 169 0 263 246 167 26 chrY 24206293 24206407 -27307177 + L2 LINE L2 3180 3309 -4 305 274 0 0 chrY 24206600 24206673 -27306911 - MIR SINE MIR -59 149 77 1134 79 6 11 chrY 24207524 24207702 -27305882 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 853 182 0 26 chrY 24207775 24207929 -27305655 - AluJo SINE Alu -160 152 3 186 333 63 9 chrY 24207946 24208057 -27305527 - MIR SINE MIR -76 186 70 207 0 0 0 chrY 24208313 24208336 -27305248 + (A)n Simple_repeat Simple_repeat 1 23 0 241 275 50 50 chrY 24209226 24209306 -27304278 + MLT1J2 LTR MaLR 69 129 -321 679 184 16 40 chrY 24209584 24209709 -27303875 - FLAM_A SINE Alu -11 122 1 2399 185 43 19 chrY 24210002 24210531 -27303053 - L1MB4 LINE L1 -354 5826 5285 671 205 187 0 chrY 24210661 24210827 -27302757 - MIR SINE MIR -37 225 29 1367 279 66 16 chrY 24210847 24211346 -27302238 - MLT1L LTR MaLR -91 524 1 229 268 94 55 chrY 24212294 24212421 -27301163 + L3 LINE CR1 1423 1554 -23 565 228 7 16 chrY 24212494 24212650 -27300934 - MIR SINE MIR -59 203 46 251 227 27 27 chrY 24213748 24213823 -27299761 - MIR SINE MIR -131 131 57 318 212 0 0 chrY 24214491 24214557 -27299027 - MER116 DNA Mariner -6 74 9 1671 241 23 24 chrY 24215253 24215558 -27298026 + MER119 DNA MER1_type 1 358 -225 2312 85 0 31 chrY 24215558 24215876 -27297708 + AluY SINE Alu 1 308 -3 1671 241 23 24 chrY 24215876 24216102 -27297482 + MER119 DNA MER1_type 358 583 0 5387 146 92 91 chrY 24216108 24217931 -27295653 + pTR5 LTR ERV1 743 2438 0 36560 95 6 7 chrY 24217934 24222881 -27290703 + Harlequin LTR ERV1 1 4944 -3455 725 166 137 22 chrY 24222882 24223153 -27290431 + Harlequin LTR ERV1 840 1141 -5755 * 2686 103 11 3 chrY 24223149 24223528 -27290056 + Harlequin LTR ERV1 7501 7882 -517 * 7348 119 22 32 chrY 24223523 24225097 -27288487 + pTR5 LTR ERV1 734 2009 -429 1326 222 24 24 chrY 24225352 24225645 -27287939 + AluJo SINE Alu 1 293 -19 182 33 67 0 chrY 24226661 24226691 -27286893 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 189 107 0 0 chrY 24227006 24227034 -27286550 + (A)n Simple_repeat Simple_repeat 1 28 0 277 360 57 38 chrY 24227267 24227478 -27286106 + L2 LINE L2 2573 2787 -527 25 0 0 0 chrY 24228368 24228393 -27285191 + AT_rich Low_complexity Low_complexity 1 25 0 591 269 17 21 chrY 24229165 24230249 -27283335 + BSR/Beta Satellite Satellite 1 1079 -6 1044 280 8 33 chrY 24230303 24230852 -27282732 + BSR/Beta Satellite Satellite 1 535 -37 2286 239 70 22 chrY 24230882 24231931 -27281653 - L1M3 LINE L1 -703 5480 4394 1809 234 20 8 chrY 24231928 24232423 -27281161 + L1M3 LINE L1 3905 4405 -1741 * 1033 199 11 6 chrY 24232583 24232759 -27280825 + MER61B LTR ERV1 1 177 -248 12306 178 30 16 chrY 24232803 24236526 -27277058 + MER61B-int LTR ERV1 1454 5217 0 1928 224 9 42 chrY 24236531 24236965 -27276619 + MER61B LTR ERV1 6 425 0 495 284 31 5 chrY 24236977 24237199 -27276385 - L1M4 LINE L1 -1277 4869 4642 1324 204 0 19 chrY 24237209 24237473 -27276111 + AluJb SINE Alu 11 269 -43 293 294 29 0 chrY 24237490 24237592 -27275992 - L1M4 LINE L1 -1498 4648 4544 359 353 17 4 chrY 24237621 24237856 -27275728 - L1M4 LINE L1 -3262 2884 2647 392 236 19 35 chrY 24237866 24238272 -27275312 + T-rich Low_complexity Low_complexity 1 399 0 1637 141 53 42 chrY 24238662 24238945 -27274639 - AluSx SINE Alu -26 286 1 1602 251 15 62 chrY 24239852 24240318 -27273266 - LTR32 LTR ERVL -21 450 7 2902 10 0 0 chrY 24240701 24241032 -27272552 - AluYa5 SINE Alu 0 331 1 1756 164 0 11 chrY 24243771 24244052 -27269532 + AluSc SINE Alu 5 282 -27 309 109 0 0 chrY 24244052 24244098 -27269486 + (TAAG)n Simple_repeat Simple_repeat 2 47 0 1850 158 3 0 chrY 24244883 24245167 -27268417 - AluSq SINE Alu -18 295 11 23 33 0 0 chrY 24246344 24246374 -27267210 + AT_rich Low_complexity Low_complexity 1 30 0 4875 226 14 100 chrY 24246391 24247532 -27266052 + L1PA12 LINE L1 1 1238 -6343 1239 60 0 27 chrY 24247532 24247717 -27265867 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4875 226 14 100 chrY 24247717 24247776 -27265808 + L1PA12 LINE L1 1238 1300 -6281 1818 165 3 7 chrY 24247776 24248067 -27265517 - AluSp SINE Alu -21 292 3 4875 226 14 100 chrY 24248067 24248770 -27264814 + L1PA12 LINE L1 1300 2004 -5577 1603 294 51 33 chrY 24248768 24249278 -27264306 + L1PA13 LINE L1 339 857 -5930 * 266 388 8 16 chrY 24249430 24249559 -27264025 + L1PA13 LINE L1 1131 1258 -5529 2965 249 75 37 chrY 24249576 24251250 -27262334 + L1PA13 LINE L1 1411 3153 -3644 1798 179 0 0 chrY 24253063 24253359 -27260225 + AluSq SINE Alu 2 297 -16 4066 45 29 0 chrY 24253359 24253746 -27259838 + L1PA4 LINE L1 5612 6020 -152 189 0 0 0 chrY 24253746 24253767 -27259817 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 4066 45 29 0 chrY 24253767 24253925 -27259659 + L1PA4 LINE L1 6020 6172 0 234 29 0 29 chrY 24253890 24254096 -27259488 + (TAA)n Simple_repeat Simple_repeat 3 207 0 281 234 32 0 chrY 24254463 24254557 -27259027 + A-rich Low_complexity Low_complexity 4 100 0 354 329 27 14 chrY 24254626 24254918 -27258666 + L1M4c LINE L1 1370 1665 -4719 571 287 100 35 chrY 24254934 24255564 -27258020 + L1M4c LINE L1 2443 3113 -3269 1618 160 24 3 chrY 24255569 24255856 -27257728 - AluSc SINE Alu -16 293 1 520 281 46 23 chrY 24255886 24256188 -27257396 + L1 LINE L1 4524 4832 -1314 1118 278 14 9 chrY 24256199 24257326 -27256258 + BSR/Beta Satellite Satellite 1 1132 -59 602 275 13 19 chrY 24257391 24258468 -27255116 + BSR/Beta Satellite Satellite 1 1069 -6 1036 293 20 19 chrY 24258564 24259205 -27254379 + BSR/Beta Satellite Satellite 1 641 0 560 288 6 20 chrY 24259471 24260067 -27253517 + BSR/Beta Satellite Satellite 1 587 -34 413 243 48 0 chrY 24260481 24260584 -27253000 + BSR/Beta Satellite Satellite 1 108 -271 394 284 9 18 chrY 24260597 24260829 -27252755 + BSR/Beta Satellite Satellite 1 229 -6 992 293 14 22 chrY 24260925 24261481 -27252103 + BSR/Beta Satellite Satellite 1 551 -3 231 378 0 0 chrY 24261560 24261679 -27251905 + BSR/Beta Satellite Satellite 3 121 -21 508 284 19 22 chrY 24261812 24262531 -27251053 + BSR/Beta Satellite Satellite 1 716 -64 311 341 42 2 chrY 24262604 24262812 -27250772 + BSR/Beta Satellite Satellite 1 216 -7 1125 283 16 14 chrY 24262838 24263653 -27249931 + BSR/Beta Satellite Satellite 1 816 -44 1122 305 3 9 chrY 24263725 24264547 -27249037 + BSR/Beta Satellite Satellite 1 817 -35 611 281 10 18 chrY 24264592 24265511 -27248073 + BSR/Beta Satellite Satellite 1 912 -6 895 273 22 11 chrY 24265607 24265878 -27247706 + BSR/Beta Satellite Satellite 21 294 -85 522 204 4 49 chrY 24265987 24266167 -27247417 + BSR/Beta Satellite Satellite 1 171 -21 2083 239 71 19 chrY 24266174 24267199 -27246385 - L1M2 LINE L1 -743 5403 4400 301 250 9 17 chrY 24267203 24267319 -27246265 + L1 LINE L1 3905 4019 -2127 1222 184 37 7 chrY 24267353 24267624 -27245960 + MER61B-int LTR ERV1 3598 3876 -1341 4325 178 30 25 chrY 24267625 24268850 -27244734 + MER61B-int LTR ERV1 1629 5217 0 2052 218 17 9 chrY 24268850 24269272 -27244312 + MER61B LTR ERV1 1 425 0 426 294 19 9 chrY 24269297 24269511 -27244073 - L1 LINE L1 -1290 4856 4641 1180 242 3 46 chrY 24269522 24269807 -27243777 + AluJb SINE Alu 13 285 -27 478 296 6 6 chrY 24269987 24270163 -27243421 - L1MEd LINE L1 -3324 2805 2630 305 293 96 54 chrY 24270169 24270483 -27243101 - L1MEd LINE L1 -4984 1135 809 403 237 28 28 chrY 24270483 24270660 -27242924 + T-rich Low_complexity Low_complexity 2 178 0 1710 167 10 30 chrY 24271067 24271372 -27242212 - AluSx SINE Alu -11 301 3 2530 62 0 0 chrY 24271416 24271722 -27241862 + AluY SINE Alu 6 311 0 996 269 16 47 chrY 24272576 24272896 -27240688 - LTR32 LTR ERVL -1 470 161 732 63 0 0 chrY 24272899 24272994 -27240590 + AluY SINE Alu 6 100 -211 376 263 45 45 chrY 24273057 24273213 -27240371 - LTR32 LTR ERVL -301 170 15 507 60 0 0 chrY 24274920 24274987 -27238597 + (TG)n Simple_repeat Simple_repeat 2 68 0 1818 180 0 0 chrY 24276284 24276579 -27237005 + AluY SINE Alu 1 295 -16 2114 116 3 31 chrY 24278210 24278553 -27235031 + AluSp SINE Alu 1 334 0 1741 179 3 7 chrY 24278799 24279100 -27234484 - AluSc SINE Alu -9 300 1 5560 254 9 4 chrY 24279139 24280866 -27232718 + L1PA12 LINE L1 1 2004 -5577 3944 269 117 33 chrY 24280864 24282821 -27230763 + L1PA13 LINE L1 339 2130 -4667 * 5111 166 20 45 chrY 24282821 24283915 -27229669 - MER11C LTR ERVK -4 1067 1 3944 269 117 33 chrY 24283915 24284070 -27229514 + L1PA13 LINE L1 2130 2271 -4526 277 23 0 45 chrY 24284070 24284114 -27229470 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 3944 269 117 33 chrY 24284114 24284558 -27229026 + L1PA13 LINE L1 2271 3162 -3635 610 187 0 0 chrY 24285926 24286033 -27227551 + AluSq/x SINE Alu 1 107 -205 236 175 25 62 chrY 24286182 24286262 -27227322 + A-rich Low_complexity Low_complexity 3 79 0 397 309 39 25 chrY 24286328 24286613 -27226971 + L1M4c LINE L1 1370 1658 -4726 670 283 79 25 chrY 24286638 24287273 -27226311 + L1M4c LINE L1 2445 3110 -3272 703 175 54 60 chrY 24287274 24287440 -27226144 - AluSg/x SINE Alu -10 300 136 536 328 53 10 chrY 24287469 24287771 -27225813 + L1 LINE L1 4521 4835 -1311 531 266 9 29 chrY 24287781 24288099 -27225485 + BSR/Beta Satellite Satellite 1 311 -3 1112 284 12 19 chrY 24288132 24290060 -27223524 + BSR/Beta Satellite Satellite 1 1914 -13 960 286 16 12 chrY 24290163 24290800 -27222784 + BSR/Beta Satellite Satellite 1 639 0 459 271 23 34 chrY 24290887 24291676 -27221908 + BSR/Beta Satellite Satellite 1 780 -23 267 323 14 9 chrY 24291849 24291973 -27221611 + BSR/Beta Satellite Satellite 1 124 -14 842 256 62 17 chrY 24292066 24292833 -27220751 + BSR/Beta Satellite Satellite 1 801 -44 1021 294 10 3 chrY 24292903 24293507 -27220077 + BSR/Beta Satellite Satellite 1 608 -122 268 319 11 0 chrY 24293617 24293711 -27219873 + BSR/Beta Satellite Satellite 1 95 -47 506 284 23 15 chrY 24293852 24294972 -27218612 + BSR/Beta Satellite Satellite 1 1128 0 695 336 13 10 chrY 24295060 24295358 -27218226 + BSR/Beta Satellite Satellite 21 319 -60 536 243 21 43 chrY 24295405 24295620 -27217964 + BSR/Beta Satellite Satellite 1 210 0 302 373 0 0 chrY 24295696 24295814 -27217770 + BSR/Beta Satellite Satellite 4 121 -21 554 279 20 22 chrY 24295959 24296666 -27216918 + BSR/Beta Satellite Satellite 1 705 -1 243 334 27 15 chrY 24296741 24296883 -27216701 + BSR/Beta Satellite Satellite 2 264 -6 1065 271 37 14 chrY 24296970 24298565 -27215019 + BSR/Beta Satellite Satellite 1 1631 -46 491 272 14 21 chrY 24298631 24299725 -27213859 + BSR/Beta Satellite Satellite 1 1086 -46 1013 312 25 17 chrY 24299790 24300549 -27213035 + BSR/Beta Satellite Satellite 1 764 -23 1074 261 16 34 chrY 24300621 24302509 -27211075 + BSR/Beta Satellite Satellite 1 1854 -6 1325 294 5 7 chrY 24302607 24302944 -27210640 + BSR/Beta Satellite Satellite 1 336 -6 594 247 4 38 chrY 24303020 24303280 -27210304 + BSR/Beta Satellite Satellite 1 251 -32 243 330 11 0 chrY 24303349 24303437 -27210147 + BSR/Beta Satellite Satellite 43 131 -11 627 261 11 30 chrY 24303503 24304113 -27209471 + BSR/Beta Satellite Satellite 1 598 -27 357 341 18 11 chrY 24304283 24304501 -27209083 + BSR/Beta Satellite Satellite 1 219 -7 1457 257 24 23 chrY 24304521 24305340 -27208244 + BSR/Beta Satellite Satellite 1 819 -43 1281 303 20 7 chrY 24305421 24306220 -27207364 + BSR/Beta Satellite Satellite 1 810 -35 189 178 0 0 chrY 24306224 24306269 -27207315 + A-rich Low_complexity Low_complexity 4 48 0 543 270 20 25 chrY 24306294 24307135 -27206449 + BSR/Beta Satellite Satellite 1 836 -42 1296 277 25 12 chrY 24307206 24309114 -27204470 + BSR/Beta Satellite Satellite 1 1932 -6 1399 257 0 0 chrY 24309221 24309517 -27204067 + BSR/Beta Satellite Satellite 35 330 -49 538 289 12 21 chrY 24309580 24309904 -27203680 + BSR/Beta Satellite Satellite 1 321 -10 561 271 13 40 chrY 24310062 24310823 -27202761 + BSR/Beta Satellite Satellite 1 740 -6 1349 290 16 20 chrY 24310877 24311581 -27202003 + BSR/Beta Satellite Satellite 1 701 0 738 265 24 27 chrY 24311625 24312550 -27201034 + BSR/Beta Satellite Satellite 1 922 -178 524 277 15 34 chrY 24312565 24312854 -27200730 + BSR/Beta Satellite Satellite 1 283 -43 553 266 25 33 chrY 24313171 24313869 -27199715 + BSR/Beta Satellite Satellite 1 692 -7 278 380 0 0 chrY 24313978 24314135 -27199449 + BSR/Beta Satellite Satellite 1 157 -1 1333 285 31 3 chrY 24314188 24314602 -27198982 + BSR/Beta Satellite Satellite 1 425 -12 541 264 15 8 chrY 24314727 24315052 -27198532 + BSR/Beta Satellite Satellite 1 327 -34 1238 261 26 41 chrY 24315122 24316745 -27196839 + BSR/Beta Satellite Satellite 1 1599 -27 301 304 11 11 chrY 24316759 24316851 -27196733 + BSR/Beta Satellite Satellite 5 96 -46 1086 273 9 19 chrY 24316866 24317188 -27196396 + BSR/Beta Satellite Satellite 45 363 -16 1023 304 3 3 chrY 24317204 24317664 -27195920 + BSR/Beta Satellite Satellite 1 460 -47 648 242 16 18 chrY 24317725 24318317 -27195267 + BSR/Beta Satellite Satellite 1 591 -44 2317 106 0 3 chrY 24318322 24318634 -27194950 - AluY SINE Alu 0 311 1 594 257 36 28 chrY 24318657 24319111 -27194473 + BSR/Beta Satellite Satellite 1 457 -6 1290 312 10 12 chrY 24319208 24319612 -27193972 + BSR/Beta Satellite Satellite 1 402 -10 469 307 9 35 chrY 24319623 24320043 -27193541 + BSR/Beta Satellite Satellite 1 409 -11 655 250 9 42 chrY 24320110 24320612 -27192972 + BSR/Beta Satellite Satellite 1 485 -4 258 295 49 16 chrY 24320687 24320809 -27192775 + BSR/Beta Satellite Satellite 1 126 -16 338 276 24 52 chrY 24320906 24321002 -27192582 + BSR/Beta Satellite Satellite 1 98 -429 1870 121 48 4 chrY 24321002 24321305 -27192279 + AluSq SINE Alu 1 315 0 338 276 24 52 chrY 24321305 24321419 -27192165 + BSR/Beta Satellite Satellite 98 498 -29 1106 290 18 16 chrY 24321444 24322263 -27191321 + BSR/Beta Satellite Satellite 1 820 -44 1142 307 6 3 chrY 24322331 24322995 -27190589 + BSR/Beta Satellite Satellite 1 666 -64 633 259 15 26 chrY 24323055 24324056 -27189528 + BSR/Beta Satellite Satellite 1 990 -43 1303 304 15 18 chrY 24324188 24324892 -27188692 + BSR/Beta Satellite Satellite 1 701 0 609 261 10 24 chrY 24325080 24325715 -27187869 + BSR/Beta Satellite Satellite 1 626 -9 314 325 47 25 chrY 24325834 24326087 -27187497 + BSR/Beta Satellite Satellite 1 258 -4 260 222 0 19 chrY 24326105 24326159 -27187425 + BSR/Beta Satellite Satellite 1 53 -326 2269 208 27 29 chrY 24326177 24326696 -27186888 - LTR22 LTR ERVK -62 518 1 468 281 12 7 chrY 24326696 24326878 -27186706 + BSR/Beta Satellite Satellite 1 182 0 1268 287 15 11 chrY 24326924 24328131 -27185453 + BSR/Beta Satellite Satellite 1 1211 -53 620 226 16 20 chrY 24328193 24328427 -27185157 + BSR/Beta Satellite Satellite 1 232 -51 618 245 20 11 chrY 24328473 24329142 -27184442 + BSR/Beta Satellite Satellite 1 675 -6 1419 268 15 26 chrY 24329245 24330739 -27182845 + BSR/Beta Satellite Satellite 1 1477 -37 235 281 0 0 chrY 24330776 24330840 -27182744 + BSR/Beta Satellite Satellite 15 78 -64 386 292 32 8 chrY 24330888 24331040 -27182544 + BSR/Beta Satellite Satellite 1 155 -15 1009 289 17 2 chrY 24331187 24331557 -27182027 + BSR/Beta Satellite Satellite 1 375 0 678 270 5 27 chrY 24331616 24331967 -27181617 + BSR/Beta Satellite Satellite 1 343 -30 970 311 23 12 chrY 24332038 24332697 -27180887 + BSR/Beta Satellite Satellite 1 666 -49 382 263 6 6 chrY 24332709 24332841 -27180743 + BSR/Beta Satellite Satellite 1 132 -35 652 258 10 26 chrY 24332890 24333970 -27179614 + BSR/Beta Satellite Satellite 1 1062 -6 740 272 10 96 chrY 24334092 24334277 -27179307 + BSR/Beta Satellite Satellite 46 196 -183 1760 155 0 4 chrY 24334277 24334584 -27179000 - AluSc SINE Alu 0 308 3 740 272 10 96 chrY 24334584 24334709 -27178875 + BSR/Beta Satellite Satellite 196 330 -49 583 291 11 27 chrY 24334772 24335174 -27178410 + BSR/Beta Satellite Satellite 1 395 -1 586 280 7 24 chrY 24335216 24335915 -27177669 + BSR/Beta Satellite Satellite 1 687 -21 374 357 14 0 chrY 24336000 24336169 -27177415 + BSR/Beta Satellite Satellite 1 171 -6 1339 269 23 10 chrY 24336242 24337959 -27175625 + BSR/Beta Satellite Satellite 1 1739 -12 679 263 17 30 chrY 24338078 24339420 -27174164 + BSR/Beta Satellite Satellite 1 1325 0 325 303 41 33 chrY 24339646 24339853 -27173731 + BSR/Beta Satellite Satellite 1 208 -7 1184 274 20 24 chrY 24339866 24341158 -27172426 + BSR/Beta Satellite Satellite 1 1286 -13 1025 299 13 2 chrY 24341174 24341637 -27171947 + BSR/Beta Satellite Satellite 1 468 -35 597 248 13 0 chrY 24341678 24341840 -27171744 + BSR/Beta Satellite Satellite 1 164 -46 569 259 11 41 chrY 24341853 24342533 -27171051 + BSR/Beta Satellite Satellite 1 659 -5 1105 265 24 21 chrY 24342568 24342896 -27170688 + BSR/Beta Satellite Satellite 35 363 -16 585 319 0 2 chrY 24342954 24343265 -27170319 + BSR/Beta Satellite Satellite 1 310 -47 561 265 20 21 chrY 24343326 24344384 -27169200 + BSR/Beta Satellite Satellite 1 1056 -7 1360 281 9 12 chrY 24344479 24345061 -27168523 + BSR/Beta Satellite Satellite 1 580 -45 294 321 28 0 chrY 24345251 24345360 -27168224 + BSR/Beta Satellite Satellite 37 148 -4 548 279 4 34 chrY 24345377 24345941 -27167643 + BSR/Beta Satellite Satellite 1 547 -2 368 331 23 0 chrY 24346149 24346282 -27167302 + BSR/Beta Satellite Satellite 2 137 -15 720 284 66 33 chrY 24346316 24346803 -27166781 + BSR/Beta Satellite Satellite 1 503 0 401 273 0 72 chrY 24346816 24346955 -27166629 + BSR/Beta Satellite Satellite 14 142 0 * 700 247 19 10 chrY 24346855 24347265 -27166319 + BSR/Beta Satellite Satellite 1 413 -46 1132 312 16 4 chrY 24347279 24347938 -27165646 + BSR/Beta Satellite Satellite 1 666 -49 546 272 14 23 chrY 24347954 24348776 -27164808 + BSR/Beta Satellite Satellite 1 814 -3 512 303 12 22 chrY 24348787 24349068 -27164516 + BSR/Beta Satellite Satellite 1 278 0 637 324 22 22 chrY 24349158 24349436 -27164148 + BSR/Beta Satellite Satellite 21 298 -81 8955 184 16 14 chrY 24349438 24352042 -27161542 + MER61B-int LTR ERV1 2141 4818 -399 761 49 10 0 chrY 24352044 24352146 -27161438 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 1685 201 18 18 chrY 24352148 24352491 -27161093 + MER61B-int LTR ERV1 4875 5217 0 2155 196 23 44 chrY 24352491 24352925 -27160659 + MER61B LTR ERV1 1 425 0 489 268 45 20 chrY 24352932 24353130 -27160454 - L1M4 LINE L1 -1272 4874 4672 1302 232 4 4 chrY 24353183 24353455 -27160129 + AluJb SINE Alu 14 285 -27 216 86 0 0 chrY 24353482 24353517 -27160067 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 2879 194 24 26 chrY 24353610 24354186 -27159398 - LTR22 LTR ERVK -3 577 3 5214 193 45 31 chrY 24354188 24354861 -27158723 - HERVK22 LTR ERVK 0 6837 6175 3653 32 0 0 chrY 24354861 24355268 -27158316 - L1PA3 LINE L1 -1 6154 5748 5214 193 45 31 chrY 24355268 24357068 -27156516 - HERVK22 LTR ERVK -662 6175 2027 593 245 58 0 chrY 24357063 24357202 -27156382 - HERVK22 LTR ERVK -4364 2473 2327 * 2015 219 36 0 chrY 24357597 24357990 -27155594 - HERVK22 LTR ERVK -6142 695 289 639 168 10 0 chrY 24358000 24358101 -27155483 - LTR12 LTR ERV1 0 714 613 286 267 11 0 chrY 24358101 24358191 -27155393 - LTR30 LTR ERV1 -79 643 553 1500 142 118 9 chrY 24358192 24358570 -27155014 - LTR12 LTR ERV1 -406 2032 1 6263 116 6 0 chrY 24358570 24359459 -27154125 - HERV9 LTR ERV1 0 8399 7506 810 103 291 0 chrY 24359464 24359698 -27153886 - Harlequin LTR ERV1 -5755 1141 840 27322 113 14 9 chrY 24359699 24362050 -27151534 - Harlequin LTR ERV1 -1994 444 2483 2819 7 0 0 chrY 24362050 24362352 -27151232 - AluYa5 SINE Alu -9 302 1 27322 113 14 9 chrY 24362352 24364807 -27148777 - Harlequin LTR ERV1 46 2484 43 4378 120 106 86 chrY 24364808 24365618 -27147966 - LTR12 LTR ERV1 0 826 1 1511 146 0 66 chrY 24365623 24365911 -27147673 - HERVK22 LTR ERVK -6560 277 9 2435 207 49 27 chrY 24365955 24366510 -27147074 - LTR22 LTR ERVK -13 567 1 453 309 32 14 chrY 24366568 24366788 -27146796 - L1 LINE L1 -3276 2870 2647 195 190 0 0 chrY 24366817 24366875 -27146709 + T-rich Low_complexity Low_complexity 2 59 0 214 85 21 43 chrY 24367021 24367068 -27146516 + (TTTTTA)n Simple_repeat Simple_repeat 2 47 0 202 238 20 14 chrY 24367085 24367232 -27146352 + T-rich Low_complexity Low_complexity 3 150 0 204 256 49 0 chrY 24367243 24367325 -27146259 + T-rich Low_complexity Low_complexity 5 90 0 1297 242 44 34 chrY 24367738 24368036 -27145548 - AluSx SINE Alu 0 302 2 1462 233 3 39 chrY 24368897 24369228 -27144356 - LTR32 LTR ERVL -41 430 112 415 175 0 0 chrY 24369222 24369285 -27144299 - AluSp SINE Alu -6 296 234 * 738 162 34 0 chrY 24369285 24369402 -27144182 - AluSp SINE Alu -118 195 75 600 248 0 0 chrY 24369406 24369531 -27144053 - FLAM_C SINE Alu -8 125 1 1159 191 37 0 chrY 24370874 24371089 -27142495 - AluSq SINE Alu -86 227 5 30 0 0 0 chrY 24372254 24372284 -27141300 + AT_rich Low_complexity Low_complexity 1 30 0 5300 267 7 23 chrY 24372301 24374057 -27139527 + L1PA12 LINE L1 1 2004 -5577 3429 287 192 30 chrY 24374055 24375710 -27137874 + L1PA13 LINE L1 339 2262 -4525 * 233 235 0 85 chrY 24375826 24375979 -27137605 + A-rich Low_complexity Low_complexity 2 141 0 497 348 19 3 chrY 24376002 24376312 -27137272 + L1M4c LINE L1 1358 1672 -4712 251 282 19 0 chrY 24376336 24376439 -27137145 + L1M4c LINE L1 2452 2556 -3826 38411 96 8 4 chrY 24376491 24382616 -27130968 - L1PA5 LINE L1 -1 6153 2 557 276 148 17 chrY 24382623 24383044 -27130540 + L1M4c LINE L1 2594 3070 -3312 372 22 0 0 chrY 24383048 24383093 -27130491 + (TG)n Simple_repeat Simple_repeat 2 46 0 1316 176 0 127 chrY 24383093 24383417 -27130167 - AluSc SINE Alu -16 283 1 293 281 40 48 chrY 24383543 24383771 -27129813 + L1 LINE L1 4616 4842 -1304 743 267 23 19 chrY 24383772 24384334 -27129250 + BSR/Beta Satellite Satellite 1 564 -121 25 0 0 0 chrY 24384354 24384379 -27129205 + AT_rich Low_complexity Low_complexity 1 25 0 1936 166 0 0 chrY 24384379 24384687 -27128897 - AluY SINE Alu -3 308 1 365 197 0 0 chrY 24384697 24384758 -27128826 + BSR/Beta Satellite Satellite 279 339 -40 1221 297 10 25 chrY 24384808 24385459 -27128125 + BSR/Beta Satellite Satellite 1 641 -1 578 262 17 22 chrY 24385472 24386390 -27127194 + BSR/Beta Satellite Satellite 1 913 -6 1183 298 16 9 chrY 24386489 24387092 -27126492 + BSR/Beta Satellite Satellite 1 607 -15 509 269 28 19 chrY 24387326 24387533 -27126051 + BSR/Beta Satellite Satellite 1 208 -1 621 247 33 24 chrY 24387544 24388335 -27125249 + BSR/Beta Satellite Satellite 1 798 -45 4168 140 174 16 chrY 24388336 24389291 -27124293 + MER11B LTR ERVK 1 1213 -23 478 272 25 0 chrY 24389312 24389489 -27124095 + BSR/Beta Satellite Satellite 1 181 0 959 307 17 17 chrY 24389584 24390320 -27123264 + BSR/Beta Satellite Satellite 1 735 -33 547 272 13 46 chrY 24390446 24391053 -27122531 + BSR/Beta Satellite Satellite 1 586 -42 320 317 20 20 chrY 24391218 24391360 -27122224 + BSR/Beta Satellite Satellite 1 142 -1 1261 276 16 21 chrY 24391475 24392706 -27120878 + BSR/Beta Satellite Satellite 1 1225 -13 750 294 80 0 chrY 24392719 24392957 -27120627 + BSR/Beta Satellite Satellite 1 257 -122 294 225 18 63 chrY 24393025 24393136 -27120448 + BSR/Beta Satellite Satellite 31 136 0 * 462 281 5 0 chrY 24393044 24393164 -27120420 + BSR/Beta Satellite Satellite 1 120 -43 680 267 21 27 chrY 24393284 24394258 -27119326 + BSR/Beta Satellite Satellite 1 968 -34 890 258 39 78 chrY 24394380 24394737 -27118847 + BSR/Beta Satellite Satellite 26 368 -11 474 300 4 21 chrY 24394760 24394945 -27118639 + BSR/Beta Satellite Satellite 1 181 -3 417 196 131 0 chrY 24394957 24395064 -27118520 + AluSp/q SINE Alu 192 312 -1 355 239 22 109 chrY 24395064 24395202 -27118382 + BSR/Beta Satellite Satellite 17 142 0 552 277 23 24 chrY 24395290 24396090 -27117494 + BSR/Beta Satellite Satellite 1 799 -12 282 354 13 4 chrY 24396187 24396333 -27117251 + BSR/Beta Satellite Satellite 1 147 -30 1205 282 19 0 chrY 24396406 24396833 -27116751 + BSR/Beta Satellite Satellite 1 435 0 483 295 15 23 chrY 24396846 24397128 -27116456 + BSR/Beta Satellite Satellite 1 279 -10 225 244 0 0 chrY 24397156 24397201 -27116383 + BSR/Beta Satellite Satellite 52 96 -46 239 286 77 33 chrY 24397227 24397318 -27116266 - BSR/Beta Satellite Satellite -18 134 40 584 276 17 23 chrY 24397365 24398108 -27115476 - BSR/Beta Satellite Satellite 0 738 1 659 262 6 35 chrY 24398222 24398633 -27114951 - BSR/Beta Satellite Satellite -4 398 1 1246 306 15 18 chrY 24398659 24400238 -27113346 - BSR/Beta Satellite Satellite -5 1572 1 25227 99 23 6 chrY 24400310 24405400 -27108184 + L1PA5 LINE L1 3 5195 -951 4549 92 3 0 chrY 24405403 24406026 -27107558 + L1PA5 LINE L1 5530 6154 0 602 254 9 15 chrY 24406149 24406737 -27106847 - BSR/Beta Satellite Satellite 0 584 1 402 249 41 14 chrY 24406750 24406884 -27106700 - BSR/Beta Satellite Satellite -47 137 1 1143 256 16 45 chrY 24406946 24407503 -27106081 - BSR/Beta Satellite Satellite -34 541 1 1029 281 12 12 chrY 24407515 24407846 -27105738 - BSR/Beta Satellite Satellite -8 371 41 495 279 1 38 chrY 24407860 24408307 -27105277 - BSR/Beta Satellite Satellite -6 430 1 916 261 66 32 chrY 24408320 24408417 -27105167 - BSR/Beta Satellite Satellite -45 1433 1341 8349 53 1 0 chrY 24408417 24409382 -27104202 + LTR5 LTR ERVK 1 966 -3 916 261 66 32 chrY 24409382 24409706 -27103878 - BSR/Beta Satellite Satellite -137 1341 1 294 336 22 8 chrY 24409809 24409943 -27103641 - BSR/Beta Satellite Satellite -15 137 2 656 262 9 34 chrY 24410023 24410731 -27102853 - BSR/Beta Satellite Satellite 0 690 1 1216 267 14 13 chrY 24411014 24411630 -27101954 - BSR/Beta Satellite Satellite -49 616 1 553 253 15 37 chrY 24411726 24412766 -27100818 - BSR/Beta Satellite Satellite 0 1016 1 401 317 0 5 chrY 24412831 24412981 -27100603 - BSR/Beta Satellite Satellite -3 149 1 874 272 11 11 chrY 24413020 24413497 -27100087 - BSR/Beta Satellite Satellite -2 477 1 505 274 21 36 chrY 24413750 24414747 -27098837 - BSR/Beta Satellite Satellite 0 982 1 1159 314 3 9 chrY 24414778 24415280 -27098304 - BSR/Beta Satellite Satellite -44 499 1 1244 278 15 5 chrY 24415307 24416521 -27097063 - BSR/Beta Satellite Satellite -44 1225 1 243 342 26 9 chrY 24416610 24416751 -27096833 - BSR/Beta Satellite Satellite -6 235 3 540 284 7 8 chrY 24416908 24417301 -27096283 - BSR/Beta Satellite Satellite -15 392 1 542 285 6 24 chrY 24417316 24417599 -27095985 - BSR/Beta Satellite Satellite -44 277 1 577 280 9 24 chrY 24417667 24418078 -27095506 - BSR/Beta Satellite Satellite -4 404 1 732 294 83 14 chrY 24418113 24418389 -27095195 - BSR/Beta Satellite Satellite -49 330 36 470 315 7 0 chrY 24418509 24418710 -27094874 - BSR/Beta Satellite Satellite -2 202 1 438 289 21 10 chrY 24418795 24419309 -27094275 - BSR/Beta Satellite Satellite 0 519 1 30 0 0 0 chrY 24419312 24419342 -27094242 + AT_rich Low_complexity Low_complexity 1 30 0 404 260 0 38 chrY 24419353 24419519 -27094065 - BSR/Beta Satellite Satellite -6 159 1 314 278 14 62 chrY 24419599 24419743 -27093841 - BSR/Beta Satellite Satellite -4 138 2 514 294 4 87 chrY 24419851 24420127 -27093457 - BSR/Beta Satellite Satellite -122 257 5 1123 271 17 23 chrY 24420147 24421158 -27092426 - BSR/Beta Satellite Satellite -44 1005 1 293 371 7 0 chrY 24421208 24421359 -27092225 - BSR/Beta Satellite Satellite 0 152 1 227 281 12 12 chrY 24421491 24421573 -27092011 - BSR/Beta Satellite Satellite -43 99 18 1736 131 0 33 chrY 24421580 24421854 -27091730 - AluY SINE Alu 0 311 47 474 229 72 33 chrY 24421864 24422125 -27091459 - BSR/Beta Satellite Satellite 0 271 1 571 213 11 35 chrY 24422138 24422357 -27091227 - BSR/Beta Satellite Satellite 0 213 1 1060 295 15 11 chrY 24422540 24423235 -27090349 - BSR/Beta Satellite Satellite -49 698 1 558 253 15 49 chrY 24423499 24424612 -27088972 - BSR/Beta Satellite Satellite 0 1074 1 1053 291 22 13 chrY 24424649 24425817 -27087767 - BSR/Beta Satellite Satellite 0 1178 1 260 304 15 0 chrY 24425828 24425963 -27087621 - L1 LINE L1 -1314 4832 4696 201 167 0 0 chrY 24425963 24425999 -27087585 + T-rich Low_complexity Low_complexity 1 36 0 30325 53 7 2 chrY 24426006 24430764 -27082820 - L1PA4 LINE L1 -141 6014 1230 853 70 31 0 chrY 24430764 24430892 -27082692 + L1PA4 LINE L1 1111 1242 -4904 2128 126 3 3 chrY 24431000 24431310 -27082274 + AluY SINE Alu 1 310 -1 1561 223 7 3 chrY 24431416 24431721 -27081863 + AluSc SINE Alu 1 306 -3 361 280 111 63 chrY 24431733 24432344 -27081240 - L1M4c LINE L1 -3280 3102 2463 2692 165 28 12 chrY 24432445 24433026 -27080558 + LTR10E LTR ERV1 9 598 -35 317 353 31 0 chrY 24433040 24433264 -27080320 - L1M4c LINE L1 -4784 1600 1370 212 186 17 34 chrY 24433335 24433394 -27080190 + T-rich Low_complexity Low_complexity 3 60 0 359 20 0 20 chrY 24433762 24433811 -27079773 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1497 199 0 0 chrY 24433820 24434086 -27079498 - AluSq SINE Alu -39 274 9 1289 263 53 19 chrY 24435942 24436466 -27077118 - L1PA13 LINE L1 -3735 3062 2521 1378 300 16 5 chrY 24436483 24436866 -27076718 - L1PA13 LINE L1 -6055 732 346 * 6099 257 173 2 chrY 24436865 24438578 -27075006 - L1PA12 LINE L1 -5574 2007 1 1464 209 50 0 chrY 24438617 24438736 -27074848 + AluSc SINE Alu 1 113 -196 200 59 29 0 chrY 24438736 24438770 -27074814 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1464 209 50 0 chrY 24438770 24438933 -27074651 + AluSc SINE Alu 113 297 -12 1627 186 14 7 chrY 24440864 24441154 -27072430 - AluY SINE Alu -19 292 1 23 0 0 0 chrY 24441436 24441459 -27072125 + AT_rich Low_complexity Low_complexity 1 23 0 39098 47 23 1 chrY 24441464 24447479 -27066105 - L1PA2 LINE L1 -4 6151 4 1478 248 23 63 chrY 24450001 24450118 -27063466 + LTR32 LTR ERVL 15 135 -336 1776 192 3 0 chrY 24450118 24450420 -27063164 + AluSp SINE Alu 1 303 -10 1478 248 23 63 chrY 24450420 24450777 -27062807 + LTR32 LTR ERVL 135 470 -1 590 51 0 0 chrY 24451558 24451636 -27061948 - L1PA4 LINE L1 -3542 2604 2527 15219 59 2 7 chrY 24451636 24455203 -27058381 + L1PA4 LINE L1 2606 6152 -3 189 0 0 0 chrY 24455226 24455247 -27058337 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 341 367 44 24 chrY 24455314 24455562 -27058022 + L1M4c LINE L1 907 1159 -4982 214 250 0 15 chrY 24455650 24455718 -27057866 + A-rich Low_complexity Low_complexity 3 69 0 259 315 51 23 chrY 24455779 24456036 -27057548 + L1M4c LINE L1 1198 1461 -4751 504 270 101 24 chrY 24456083 24456694 -27056890 + L1M4c LINE L1 2291 2939 -3271 1496 211 10 16 chrY 24456696 24457004 -27056580 - AluSc SINE Alu -3 306 1 480 276 77 17 chrY 24457031 24457328 -27056256 + L1 LINE L1 4521 4835 -1311 540 284 10 10 chrY 24457336 24457608 -27055976 + BSR/Beta Satellite Satellite 1 272 -40 247 302 94 0 chrY 24457685 24457791 -27055793 + BSR/Beta Satellite Satellite 41 156 -223 1988 171 0 3 chrY 24457798 24458108 -27055476 + AluSg SINE Alu 1 309 -1 747 286 9 3 chrY 24458156 24458341 -27055243 + BSR/Beta Satellite Satellite 1 186 -13 1136 275 16 23 chrY 24458352 24458893 -27054691 + BSR/Beta Satellite Satellite 1 544 -1072 243 0 0 0 chrY 24458893 24458920 -27054664 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1136 275 16 23 chrY 24458920 24459973 -27053611 + BSR/Beta Satellite Satellite 544 1609 -7 1036 314 0 0 chrY 24460076 24460372 -27053212 + BSR/Beta Satellite Satellite 26 321 -58 508 271 15 25 chrY 24460486 24460687 -27052897 + BSR/Beta Satellite Satellite 1 198 -15 620 284 16 21 chrY 24460716 24461596 -27051988 + BSR/Beta Satellite Satellite 1 875 -20 291 379 8 0 chrY 24461758 24461915 -27051669 + BSR/Beta Satellite Satellite 1 158 -30 1109 274 18 29 chrY 24461997 24462817 -27050767 + BSR/Beta Satellite Satellite 1 810 -50 1131 290 7 7 chrY 24462853 24463641 -27049943 + BSR/Beta Satellite Satellite 1 788 -34 1867 141 0 44 chrY 24463651 24463992 -27049592 + AluSg SINE Alu 1 310 0 460 255 11 38 chrY 24464024 24464462 -27049122 + BSR/Beta Satellite Satellite 1 426 0 351 294 41 68 chrY 24464537 24464683 -27048901 + BSR/Beta Satellite Satellite 1 142 0 * 504 278 14 13 chrY 24464566 24464893 -27048691 + BSR/Beta Satellite Satellite 1 327 0 888 302 21 18 chrY 24464916 24465250 -27048334 + BSR/Beta Satellite Satellite 29 363 -16 768 318 0 4 chrY 24465317 24465701 -27047883 + BSR/Beta Satellite Satellite 1 382 -47 479 249 25 27 chrY 24465752 24466446 -27047138 + BSR/Beta Satellite Satellite 1 692 -25 376 279 38 17 chrY 24466532 24466805 -27046779 + BSR/Beta Satellite Satellite 1 278 -6 1227 289 17 22 chrY 24466880 24467564 -27046020 + BSR/Beta Satellite Satellite 1 680 -21 3694 175 23 49 chrY 24467574 24468583 -27045001 + MER11C LTR ERVK 1 1071 0 3476 146 50 97 chrY 24468583 24469476 -27044108 + HERVK11 LTR ERVK 1 851 -7102 4487 88 3 0 chrY 24469476 24470092 -27043492 + HERVK11 LTR ERVK 1165 1782 -6171 10614 71 11 5 chrY 24470092 24471557 -27042027 + HERVK11 LTR ERVK 3128 4601 -3352 7609 95 0 11 chrY 24471555 24472647 -27040937 + HERVK11 LTR ERVK 5525 6604 -1349 * 1250 157 32 16 chrY 24472647 24472896 -27040688 + MER11B LTR ERVK 984 1236 0 284 347 8 0 chrY 24472914 24473038 -27040546 + BSR/Beta Satellite Satellite 7 131 -11 498 261 2 38 chrY 24473055 24473285 -27040299 + BSR/Beta Satellite Satellite 1 221 -27 518 260 12 33 chrY 24473343 24473725 -27039859 + BSR/Beta Satellite Satellite 1 373 -37 548 238 23 26 chrY 24474041 24474769 -27038815 + BSR/Beta Satellite Satellite 1 725 -9 1856 148 3 35 chrY 24474777 24475088 -27038496 - AluY SINE Alu -10 301 1 253 311 11 11 chrY 24475106 24475196 -27038388 + BSR/Beta Satellite Satellite 7 96 -46 865 259 100 10 chrY 24475222 24475511 -27038073 + BSR/Beta Satellite Satellite 56 370 -9 771 342 12 0 chrY 24475528 24475847 -27037737 + BSR/Beta Satellite Satellite 9 331 -48 418 273 0 0 chrY 24475902 24476001 -27037583 + BSR/Beta Satellite Satellite 1 99 -43 588 280 15 11 chrY 24476267 24477195 -27036389 + BSR/Beta Satellite Satellite 1 931 0 700 262 45 35 chrY 24477286 24477576 -27036008 + BSR/Beta Satellite Satellite 23 315 -64 915 265 15 21 chrY 24477675 24478454 -27035130 + BSR/Beta Satellite Satellite 1 774 -1 917 249 17 23 chrY 24478465 24479282 -27034302 + BSR/Beta Satellite Satellite 1 821 -1229 1549 248 77 15 chrY 24479282 24479761 -27033823 - LTR22 LTR ERVK 0 509 1 917 249 17 23 chrY 24479761 24480481 -27033103 + BSR/Beta Satellite Satellite 821 2004 -46 1131 299 12 11 chrY 24480617 24481231 -27032353 + BSR/Beta Satellite Satellite 1 614 -15 530 274 5 31 chrY 24481505 24482144 -27031440 + BSR/Beta Satellite Satellite 1 622 -9 888 270 23 32 chrY 24482474 24483381 -27030203 + BSR/Beta Satellite Satellite 1 898 0 777 262 87 7 chrY 24483416 24483691 -27029893 + BSR/Beta Satellite Satellite 41 337 -42 357 319 11 23 chrY 24483715 24483914 -27029670 + BSR/Beta Satellite Satellite 1 196 -4 540 272 24 26 chrY 24484009 24485089 -27028495 + BSR/Beta Satellite Satellite 1 1077 -13 887 283 9 6 chrY 24485106 24485547 -27028037 + BSR/Beta Satellite Satellite 1 442 -59 581 248 8 33 chrY 24485679 24486042 -27027542 + BSR/Beta Satellite Satellite 1 354 -3 457 289 34 31 chrY 24486204 24486690 -27026894 + BSR/Beta Satellite Satellite 1 487 0 1409 277 10 4 chrY 24486780 24487213 -27026371 + BSR/Beta Satellite Satellite 1 435 -52 377 326 9 0 chrY 24487414 24487561 -27026023 + BSR/Beta Satellite Satellite 1 148 -30 383 135 0 14 chrY 24487668 24487742 -27025842 + (CA)n Simple_repeat Simple_repeat 2 74 0 1068 294 3 6 chrY 24487843 24488170 -27025414 + BSR/Beta Satellite Satellite 45 370 -9 318 363 98 3 chrY 24488184 24488479 -27025105 + BSR/Beta Satellite Satellite 9 331 -48 428 262 5 10 chrY 24488492 24488623 -27024961 + BSR/Beta Satellite Satellite 1 130 -39 548 278 12 21 chrY 24488747 24489685 -27023899 + BSR/Beta Satellite Satellite 1 928 -3 883 292 24 31 chrY 24489863 24490447 -27023137 + BSR/Beta Satellite Satellite 1 894 -129 1977 127 6 29 chrY 24490447 24490763 -27022821 + AluY SINE Alu 1 309 -2 883 292 24 31 chrY 24490763 24490888 -27022696 + BSR/Beta Satellite Satellite 894 1018 -5 607 276 24 21 chrY 24490981 24491780 -27021804 + BSR/Beta Satellite Satellite 1 801 -7 1352 270 30 11 chrY 24492091 24492875 -27020709 + BSR/Beta Satellite Satellite 1 799 -7 1098 293 13 4 chrY 24492927 24493692 -27019892 + BSR/Beta Satellite Satellite 1 771 -51 378 235 72 36 chrY 24493704 24493855 -27019729 + BSR/Beta Satellite Satellite 1 156 -12 542 265 17 28 chrY 24493878 24494789 -27018795 + BSR/Beta Satellite Satellite 1 901 -6 1101 284 13 20 chrY 24494883 24495414 -27018170 + BSR/Beta Satellite Satellite 1 527 -27 1930 262 43 17 chrY 24495426 24496478 -27017106 - L1M2 LINE L1 -743 5403 4400 1474 238 22 12 chrY 24496482 24496974 -27016610 + L1M2 LINE L1 3905 4401 -1745 1496 232 22 11 chrY 24496989 24497226 -27016358 + MER61B LTR ERV1 60 304 -121 201 39 0 0 chrY 24497226 24497252 -27016332 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1496 232 22 11 chrY 24497252 24497376 -27016208 + MER61B LTR ERV1 304 425 0 527 167 48 56 chrY 24497393 24497519 -27016065 + MER61B-int LTR ERV1 19 143 -5074 1892 222 21 37 chrY 24497579 24498146 -27015438 + MER61B-int LTR ERV1 280 837 -4380 1642 131 11 0 chrY 24498155 24498422 -27015162 + MER61B-int LTR ERV1 944 1213 -4004 * 4362 147 18 28 chrY 24498417 24498466 -27015118 + MER61B-int LTR ERV1 1361 1409 -3808 1820 124 28 25 chrY 24498466 24498775 -27014809 + AluY SINE Alu 1 310 0 4362 147 18 28 chrY 24498775 24499632 -27013952 + MER61B-int LTR ERV1 1409 2259 -2958 2474 130 29 0 chrY 24499716 24500125 -27013459 + HERVL-A1 LTR ERVL 5234 5654 0 1977 169 17 8 chrY 24500125 24500480 -27013104 + MLT2A1 LTR ERVL 1 358 -86 22 94 0 0 chrY 24501307 24501371 -27012213 + AT_rich Low_complexity Low_complexity 1 64 0 30 77 0 0 chrY 24501571 24501636 -27011948 + AT_rich Low_complexity Low_complexity 1 65 0 185 106 0 96 chrY 24501941 24502035 -27011549 + (TTAA)n Simple_repeat Simple_repeat 3 87 0 771 340 72 48 chrY 24502423 24503119 -27010465 + L1M4 LINE L1 3036 3760 -2386 1425 207 149 13 chrY 24503119 24503495 -27010089 - MSTA LTR MaLR -1 427 1 771 340 72 48 chrY 24503495 24503695 -27009889 + L1M4 LINE L1 3760 3954 -2192 400 295 28 51 chrY 24503730 24503984 -27009600 + L1M4 LINE L1 4053 4300 -1846 488 223 19 0 chrY 24504112 24504215 -27009369 + MER2 DNA MER2_type 6 110 -235 1413 287 31 38 chrY 24504502 24504735 -27008849 + MER66B-int LTR ERV1 4622 4855 -2901 1862 176 3 0 chrY 24504735 24505037 -27008547 - AluSc SINE Alu -6 303 1 1413 287 31 38 chrY 24505037 24505931 -27007653 + MER66B-int LTR ERV1 4855 6177 -1579 1531 201 33 6 chrY 24506065 24506394 -27007190 + MER66B-int LTR ERV1 6339 6676 0 1077 225 92 22 chrY 24506394 24506710 -27006874 + MER66B LTR ERV1 1 338 -148 1502 90 369 137 chrY 24506757 24507386 -27006198 - LTR12 LTR ERV1 0 2035 31 53782 108 21 10 chrY 24507439 24515858 -26997726 - HERV9 LTR ERV1 0 8399 1 4449 139 78 18 chrY 24515858 24516637 -26996947 - LTR12 LTR ERV1 0 826 1 840 221 38 52 chrY 24516715 24517005 -26996579 - pTR5 LTR ERV1 -1410 1028 743 266 211 42 0 chrY 24517047 24517118 -26996466 + MER66A LTR ERV1 403 476 -2 414 244 89 44 chrY 24517169 24517484 -26996100 + MER96B DNA MER1_type? 24 352 -65 1824 241 34 35 chrY 24517501 24518211 -26995373 - L1MC1 LINE L1 -22 6311 5551 647 153 51 7 chrY 24518306 24518443 -26995141 + FRAM SINE Alu 25 167 -9 201 147 0 0 chrY 24518452 24518486 -26995098 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 181 200 46 0 chrY 24518478 24518543 -26995041 + GA-rich Low_complexity Low_complexity 2 69 0 * 1212 225 11 7 chrY 24518646 24518930 -26994654 - AluSx SINE Alu -15 297 13 366 23 0 0 chrY 24519103 24519146 -26994438 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 322 99 8 chrY 24519422 24519543 -26994041 - MIR SINE MIR -74 188 57 9551 117 3 0 chrY 24520627 24522083 -26991501 + L1PA5 LINE L1 1 1460 -4686 12392 45 0 1 chrY 24522099 24523709 -26989875 - L1PA3 LINE L1 -743 5403 3795 5728 56 16 1 chrY 24523709 24524438 -26989146 + L1PA3 LINE L1 5408 6155 0 27821 68 2 9 chrY 24524438 24529174 -26984410 + L1PA5 LINE L1 1446 6152 -2 21 0 0 0 chrY 24529668 24529689 -26983895 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 24529759 24529780 -26983804 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrY 24529967 24529989 -26983595 + AT_rich Low_complexity Low_complexity 1 22 0 387 305 0 0 chrY 24531292 24531397 -26982187 + FLAM_C SINE Alu 6 110 -23 292 149 15 45 chrY 24531409 24531476 -26982108 - MER1B DNA MER1_type -13 320 256 1272 177 49 11 chrY 24531622 24531887 -26981697 - MER1B DNA MER1_type -64 275 1 824 202 25 62 chrY 24531996 24532239 -26981345 + AluJb SINE Alu 1 234 -78 29 0 0 0 chrY 24532603 24532632 -26980952 + AT_rich Low_complexity Low_complexity 1 29 0 315 0 0 0 chrY 24532777 24532812 -26980772 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chrY 24532867 24532895 -26980689 + AT_rich Low_complexity Low_complexity 1 28 0 185 341 135 16 chrY 24534726 24534852 -26978732 - L2 LINE L2 -288 3025 2885 22 56 0 0 chrY 24535994 24536030 -26977554 + AT_rich Low_complexity Low_complexity 1 36 0 28 61 0 0 chrY 24536823 24536872 -26976712 + AT_rich Low_complexity Low_complexity 1 49 0 1800 139 8 0 chrY 24537227 24537486 -26976098 - AluSc SINE Alu -48 261 1 353 39 20 0 chrY 24537662 24537713 -26975871 + (TA)n Simple_repeat Simple_repeat 2 53 0 1955 113 7 0 chrY 24537713 24537987 -26975597 - AluY SINE Alu -35 276 1 1187 206 86 37 chrY 24538093 24538521 -26975063 - L1M4 LINE L1 -429 5745 5297 837 133 22 0 chrY 24539599 24539734 -26973850 + AluSp/q SINE Alu 171 308 -5 1390 198 28 25 chrY 24540607 24540890 -26972694 - AluSg SINE Alu -22 288 5 1414 216 16 13 chrY 24541404 24541710 -26971874 + AluJb SINE Alu 6 312 0 640 246 48 66 chrY 24542004 24542129 -26971455 - MLT1A1 LTR MaLR -19 346 220 2164 117 3 19 chrY 24542129 24542445 -26971139 - AluY SINE Alu 0 311 1 279 113 0 0 chrY 24542446 24542499 -26971085 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1888 125 29 4 chrY 24542500 24542781 -26970803 - AluSc SINE Alu -21 288 1 640 246 48 66 chrY 24542781 24542923 -26970661 - MLT1A1 LTR MaLR -144 221 80 658 243 107 27 chrY 24542932 24543419 -26970165 - LTR65-int LTR ERV1 -258 4678 4125 288 0 0 0 chrY 24543419 24543451 -26970133 + (TA)n Simple_repeat Simple_repeat 1 32 0 1153 186 0 83 chrY 24543477 24543730 -26969854 - AluJb SINE Alu -80 232 1 358 221 13 74 chrY 24543811 24543960 -26969624 - LTR65-int LTR ERV1 -1121 3815 3676 1927 167 10 0 chrY 24544047 24544346 -26969238 - AluSx SINE Alu -10 302 1 2371 243 89 41 chrY 24544359 24545437 -26968147 - LTR65-int LTR ERV1 -3520 1416 287 270 247 47 24 chrY 24545451 24545536 -26968048 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 24 32 0 0 chrY 24547372 24547403 -26966181 + AT_rich Low_complexity Low_complexity 1 31 0 283 323 0 0 chrY 24547900 24547993 -26965591 + L1M3de LINE L1 753 845 -6284 225 306 56 0 chrY 24548021 24548093 -26965491 + L1M3de LINE L1 1416 1491 -5638 2271 281 42 55 chrY 24548671 24549804 -26963780 + L1M3de LINE L1 286 2051 -4602 1829 155 6 22 chrY 24549841 24550157 -26963427 + AluSx SINE Alu 1 311 -1 1394 271 97 70 chrY 24550198 24550999 -26962585 + L1M3de LINE L1 15 837 -6372 823 256 13 76 chrY 24550971 24551365 -26962219 + L1M3de LINE L1 1564 1932 -5277 * 324 320 148 47 chrY 24551378 24551762 -26961822 - L1MEc LINE L1 -5918 478 56 1299 182 73 11 chrY 24552196 24552471 -26961113 - AluSg SINE Alu -17 293 2 319 56 37 0 chrY 24552473 24552527 -26961057 + (TAAAAA)n Simple_repeat Simple_repeat 2 57 0 2176 94 3 25 chrY 24552530 24552848 -26960736 + AluY SINE Alu 1 311 0 2357 81 7 0 chrY 24552894 24553203 -26960381 - AluY SINE Alu 0 311 1 1414 270 87 11 chrY 24553431 24554053 -26959531 - LTR65 LTR ERV1 0 669 1 1351 225 7 14 chrY 24554639 24554932 -26958652 + AluSx SINE Alu 1 291 -21 22 35 0 0 chrY 24554932 24554961 -26958623 + AT_rich Low_complexity Low_complexity 1 29 0 795 207 0 30 chrY 24554993 24555162 -26958422 - FRAM SINE Alu -6 170 7 198 0 0 0 chrY 24555166 24555188 -26958396 + (TG)n Simple_repeat Simple_repeat 2 23 0 2079 125 0 3 chrY 24556850 24557138 -26956446 + AluSg SINE Alu 2 288 -22 4534 231 81 16 chrY 24557742 24558714 -26954870 - L1MB8 LINE L1 0 6178 5271 2357 113 0 0 chrY 24558714 24559014 -26954570 - AluSg SINE Alu -10 300 1 4534 231 81 16 chrY 24559014 24560502 -26953082 - L1MB8 LINE L1 -907 5271 3549 248 275 147 37 chrY 24560508 24560617 -26952967 - L2 LINE L2 0 3313 3193 207 139 0 0 chrY 24560848 24560884 -26952700 + (TC)n Simple_repeat Simple_repeat 1 36 0 204 102 34 119 chrY 24561577 24561636 -26951948 - L2 LINE L2 0 3272 3219 239 306 82 0 chrY 24561907 24561992 -26951592 - L2 LINE L2 -12 3301 3210 2025 152 0 0 chrY 24562217 24562514 -26951070 - AluSx SINE Alu -15 297 1 1808 171 30 7 chrY 24562960 24563265 -26950319 - AluJo SINE Alu 0 312 1 333 287 101 71 chrY 24563585 24563993 -26949591 + L2 LINE L2 2844 3263 -50 26 64 0 0 chrY 24564137 24564184 -26949400 + AT_rich Low_complexity Low_complexity 1 47 0 2228 115 6 6 chrY 24564401 24564713 -26948871 - AluSp SINE Alu -1 312 1 2083 179 2 35 chrY 24565058 24565461 -26948123 - MLT1B LTR MaLR 0 390 1 249 273 49 77 chrY 24565648 24565727 -26947857 + MER5B DNA MER1_type 1 81 -97 3385 122 6 10 chrY 24565727 24566226 -26947358 - LOR1a LTR ERV1 0 497 1 249 273 49 77 chrY 24566226 24566241 -26947343 + MER5B DNA MER1_type 81 95 -83 2399 95 0 0 chrY 24566241 24566545 -26947039 + AluY SINE Alu 1 304 -7 249 273 49 77 chrY 24566545 24566632 -26946952 + MER5B DNA MER1_type 95 178 0 232 313 40 30 chrY 24566855 24566954 -26946630 - L2 LINE L2 -6 3266 3167 342 45 0 0 chrY 24567344 24567388 -26946196 + (TG)n Simple_repeat Simple_repeat 1 44 0 291 28 0 0 chrY 24567387 24567423 -26946161 + (GA)n Simple_repeat Simple_repeat 1 36 0 * 21 0 0 0 chrY 24568557 24568578 -26945006 + AT_rich Low_complexity Low_complexity 1 21 0 427 269 97 16 chrY 24569367 24569553 -26944031 + L1MCc LINE L1 18 218 -6205 1666 189 7 17 chrY 24569671 24569968 -26943616 + AluJo SINE Alu 1 294 -18 2634 154 20 7 chrY 24570381 24570823 -26942761 + LOR1a LTR ERV1 1 448 -49 953 156 0 0 chrY 24570875 24571016 -26942568 - AluJb SINE Alu -171 141 1 462 138 0 0 chrY 24571017 24571082 -26942502 + LOR1b LTR ERV1 397 461 0 39 50 0 0 chrY 24571215 24571275 -26942309 + AT_rich Low_complexity Low_complexity 1 60 0 1898 158 7 0 chrY 24571527 24571811 -26941773 + AluSx SINE Alu 9 294 -18 2881 140 19 20 chrY 24571904 24572391 -26941193 + LTR45B LTR ERV1 2 487 -2 183 129 0 0 chrY 24572454 24572485 -26941099 + (ATG)n Simple_repeat Simple_repeat 1 31 0 1984 156 7 0 chrY 24572510 24572818 -26940766 + AluSx SINE Alu 1 310 -2 486 309 26 34 chrY 24572834 24573054 -26940530 - MIR SINE MIR -48 214 2 2040 159 0 0 chrY 24573335 24573636 -26939948 + AluSx SINE Alu 1 301 -11 445 273 50 42 chrY 24574224 24574484 -26939100 - L1MC5 LINE L1 -120 7841 7580 473 222 18 105 chrY 24574585 24574649 -26938935 + MER103 DNA DNA 8 76 -90 2629 53 0 0 chrY 24574649 24574952 -26938632 - AluY SINE Alu -6 305 3 473 222 18 105 chrY 24574952 24575058 -26938526 + MER103 DNA DNA 76 163 -3 688 246 99 79 chrY 24576572 24576772 -26936812 - L1MC4 LINE L1 0 8042 7848 2512 64 0 0 chrY 24576772 24577070 -26936514 - AluY SINE Alu -13 298 1 688 246 99 79 chrY 24577070 24577277 -26936307 - L1MC4 LINE L1 -194 7848 7647 2156 126 0 3 chrY 24577277 24577578 -26936006 - AluSx SINE Alu -12 300 1 688 246 99 79 chrY 24577578 24577746 -26935838 - L1MC4 LINE L1 -395 7647 7349 2691 167 55 66 chrY 24577818 24578058 -26935526 + L1MB8 LINE L1 5546 5787 -391 2186 127 3 3 chrY 24578058 24578365 -26935219 + AluSx SINE Alu 6 312 0 2691 167 55 66 chrY 24578365 24578764 -26934820 + L1MB8 LINE L1 5787 6178 0 199 271 17 0 chrY 24579125 24579184 -26934400 - MIR SINE MIR -106 102 43 651 231 193 0 chrY 24579482 24579694 -26933890 + MIR SINE MIR 5 257 -5 426 324 24 29 chrY 24579839 24580046 -26933538 + MIR3 SINE MIR 3 208 0 1067 205 58 5 chrY 24580223 24580447 -26933137 + MER8 DNA MER2_type 4 239 0 2476 65 10 0 chrY 24580497 24580790 -26932794 - AluY SINE Alu -15 296 1 258 32 0 0 chrY 24581217 24581248 -26932336 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 1651 188 18 0 chrY 24581249 24581525 -26932059 - AluJo SINE Alu -31 281 1 263 296 0 0 chrY 24581529 24581600 -26931984 + L2 LINE L2 3227 3297 -16 690 283 85 0 chrY 24581644 24581821 -26931763 - MLT1F1 LTR MaLR -349 218 27 423 0 0 0 chrY 24581821 24581868 -26931716 + (TG)n Simple_repeat Simple_repeat 2 48 0 1278 148 11 0 chrY 24581868 24582057 -26931527 - AluSg/x SINE Alu -25 287 97 2111 121 3 23 chrY 24582062 24582367 -26931217 + AluSc SINE Alu 1 299 -10 279 0 0 0 chrY 24582368 24582399 -26931185 + (CA)n Simple_repeat Simple_repeat 2 32 0 589 241 0 0 chrY 24582400 24582508 -26931076 + MLT1F1 LTR MaLR 26 133 -434 667 200 17 0 chrY 24582509 24582629 -26930955 + FLAM_C SINE Alu 3 124 -19 1748 215 115 10 chrY 24582654 24583063 -26930521 + MLT1F1 LTR MaLR 116 567 0 717 233 168 67 chrY 24583753 24584157 -26929427 - MLT1J1 LTR MaLR -1 445 1 1631 206 3 0 chrY 24584540 24584822 -26928762 + AluJo SINE Alu 1 283 -29 2371 70 0 38 chrY 24585053 24585368 -26928216 + AluY SINE Alu 1 303 -8 310 403 62 6 chrY 24585423 24585599 -26927985 + MIR3 SINE MIR 20 205 -3 248 246 18 18 chrY 24585618 24585675 -26927909 + L3 LINE CR1 1420 1476 -101 552 247 50 63 chrY 24585676 24585915 -26927669 - MIR SINE MIR -2 260 25 2171 126 0 0 chrY 24585972 24586273 -26927311 - AluSx SINE Alu -11 301 1 2207 104 40 0 chrY 24586322 24586621 -26926963 + AluY SINE Alu 1 311 0 1304 187 39 21 chrY 24586911 24587070 -26926514 - AluJb SINE Alu -24 288 120 243 79 0 0 chrY 24587070 24587108 -26926476 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1304 187 39 21 chrY 24587108 24587231 -26926353 - AluJb SINE Alu -192 120 1 475 332 75 26 chrY 24587372 24587598 -26925986 + MIR SINE MIR 12 248 -14 1975 136 7 27 chrY 24587688 24587989 -26925595 + AluSx SINE Alu 1 295 -17 1525 182 0 18 chrY 24588776 24589056 -26924528 + AluJo SINE Alu 30 304 -8 23 54 0 0 chrY 24589056 24589093 -26924491 + AT_rich Low_complexity Low_complexity 1 37 0 2273 110 0 0 chrY 24589288 24589588 -26923996 + AluSq SINE Alu 1 300 -13 2010 137 10 3 chrY 24590875 24591174 -26922410 + AluSq SINE Alu 1 301 -12 3820 114 32 50 chrY 24592181 24592837 -26920747 + LTR9B LTR ERV1 1 644 0 610 234 76 35 chrY 24592938 24593109 -26920475 + MLT1K LTR MaLR 395 572 -16 239 363 44 28 chrY 24593254 24593436 -26920148 - MER5A DNA MER1_type -3 186 2 218 325 25 33 chrY 24593759 24593879 -26919705 - MIR SINE MIR -124 138 20 4597 110 44 39 chrY 24594121 24594473 -26919111 + MER4E LTR ERV1 1 350 -429 2191 102 20 7 chrY 24594473 24594766 -26918818 - AluSg SINE Alu -13 297 1 4597 110 44 39 chrY 24594766 24595188 -26918396 + MER4E LTR ERV1 350 779 0 415 288 212 11 chrY 24595964 24596238 -26917346 - L1ME4a LINE L1 -260 5861 5533 288 280 93 28 chrY 24596405 24596512 -26917072 - MIR SINE MIR -74 188 75 1798 221 37 42 chrY 24596742 24597199 -26916385 + MLT1E3 LTR MaLR 161 615 -9 890 201 0 6 chrY 24597347 24597552 -26916032 + FRAM SINE Alu 1 176 0 308 297 0 0 chrY 24598801 24598892 -26914692 + MIR SINE MIR 64 154 -108 521 220 36 36 chrY 24599117 24599285 -26914299 - MER5B DNA MER1_type 0 178 11 231 88 0 0 chrY 24599861 24599895 -26913689 + (TG)n Simple_repeat Simple_repeat 2 35 0 596 206 174 0 chrY 24600468 24600623 -26912961 + L2 LINE L2 3118 3299 -14 486 180 0 0 chrY 24600627 24600727 -26912857 + GA-rich Low_complexity Low_complexity 4 103 0 213 328 42 34 chrY 24600727 24600846 -26912738 + MIR SINE MIR 14 133 -129 1268 240 56 36 chrY 24601359 24601804 -26911780 - LTR37B LTR ERV1 0 468 15 2031 140 0 3 chrY 24601805 24602098 -26911486 - AluSq SINE Alu -21 292 1 2354 90 0 3 chrY 24602713 24603012 -26910572 - AluSx SINE Alu -14 298 1 231 258 131 102 chrY 24603744 24603841 -26909743 + MIR SINE MIR 6 99 -163 1702 122 214 25 chrY 24603841 24604134 -26909450 + MSTA LTR MaLR 1 377 -51 1883 146 29 0 chrY 24604134 24604368 -26909216 - AluSg SINE Alu 0 363 116 261 0 0 0 chrY 24604368 24604397 -26909187 + (TG)n Simple_repeat Simple_repeat 2 30 0 1883 146 29 0 chrY 24604397 24604517 -26909067 - AluSg SINE Alu -247 116 1 1702 122 214 25 chrY 24604517 24604581 -26909003 + MSTA LTR MaLR 377 428 0 231 258 131 102 chrY 24604581 24604727 -26908857 + MIR SINE MIR 99 256 -6 305 269 92 35 chrY 24604964 24605105 -26908479 + L2 LINE L2 3123 3271 -1 320 261 35 63 chrY 24605788 24605930 -26907654 - MIR SINE MIR -78 184 47 476 265 61 20 chrY 24607093 24607240 -26906344 - MIR SINE MIR -64 198 46 3190 170 28 67 chrY 24607247 24607561 -26906023 - LTR39 LTR ERV1 -1 782 457 2084 151 0 0 chrY 24607561 24607860 -26905724 + AluSx SINE Alu 1 299 -13 3190 170 28 67 chrY 24607860 24608162 -26905422 - LTR39 LTR ERV1 -326 457 199 876 50 17 0 chrY 24608162 24608281 -26905303 - L1PA4 LINE L1 -1 6154 6034 3190 170 28 67 chrY 24608281 24608423 -26905161 - LTR39 LTR ERV1 -584 199 53 500 285 128 32 chrY 24608916 24609197 -26904387 - L2 LINE L2 -11 3302 2995 2105 98 0 21 chrY 24609437 24609748 -26903836 + AluSg SINE Alu 1 305 0 227 355 0 11 chrY 24609752 24609845 -26903739 + LTR33 LTR ERVL 66 157 -364 387 250 125 0 chrY 24609940 24610068 -26903516 + LTR33 LTR ERVL 378 521 0 701 272 31 40 chrY 24610361 24610585 -26902999 + MIR SINE MIR 28 249 -13 2104 152 0 0 chrY 24611523 24611832 -26901752 - AluSc SINE Alu 0 309 1 518 327 54 18 chrY 24611878 24612156 -26901428 + L2 LINE L2 2564 2851 -463 482 248 56 110 chrY 24612320 24612602 -26900982 - MLT1H LTR MaLR -167 375 114 2235 90 0 32 chrY 24612602 24612914 -26900670 - AluY SINE Alu -4 307 6 482 248 56 110 chrY 24612914 24612965 -26900619 - MLT1H LTR MaLR -428 114 62 183 129 0 0 chrY 24613429 24613460 -26900124 + (CAA)n Simple_repeat Simple_repeat 2 32 0 202 291 0 0 chrY 24614904 24614959 -26898625 + (TG)n Simple_repeat Simple_repeat 2 56 0 519 233 141 5 chrY 24615689 24615973 -26897611 + MLT1I LTR MaLR 35 406 -3 180 111 0 0 chrY 24616887 24616914 -26896670 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2204 116 7 7 chrY 24616934 24617244 -26896340 - AluSg SINE Alu 0 310 1 322 247 14 14 chrY 24617570 24617643 -26895941 + L3 LINE CR1 558 630 -947 2252 141 0 0 chrY 24618906 24619218 -26894366 + AluSx SINE Alu 1 312 0 1297 217 14 39 chrY 24619277 24619563 -26894021 + AluJo SINE Alu 18 296 -16 2113 143 0 0 chrY 24619694 24619995 -26893589 + AluSx SINE Alu 1 301 -11 388 308 163 18 chrY 24620418 24620645 -26892939 - MIR SINE MIR -1 261 2 354 261 30 37 chrY 24620653 24620787 -26892797 + L3 LINE CR1 661 793 -784 1972 132 7 0 chrY 24620854 24621165 -26892419 + AluSg SINE Alu 1 310 0 362 226 105 38 chrY 24621252 24621345 -26892239 - LTR33 LTR ERVL -2 519 434 1998 163 60 24 chrY 24621345 24621494 -26892090 + MSTB1 LTR MaLR 1 143 -289 2204 105 0 3 chrY 24621494 24621788 -26891796 - AluSq SINE Alu -16 297 5 1998 163 60 24 chrY 24621788 24622038 -26891546 + MSTB1 LTR MaLR 143 418 -14 315 0 0 0 chrY 24622038 24622073 -26891511 + (CA)n Simple_repeat Simple_repeat 2 36 0 1998 163 60 24 chrY 24622073 24622089 -26891495 + MSTB1 LTR MaLR 418 432 0 362 226 105 38 chrY 24622089 24622128 -26891456 - LTR33 LTR ERVL -87 434 378 394 314 35 12 chrY 24622212 24622381 -26891203 - LTR33 LTR ERVL -348 173 1 334 305 182 68 chrY 24622392 24622952 -26890632 + L3 LINE CR1 944 1567 -10 283 348 54 0 chrY 24624273 24624385 -26889199 - MER5B DNA MER1_type -60 118 1 1009 229 116 10 chrY 24625332 24625625 -26887959 + MLT1C LTR MaLR 144 467 0 281 326 22 0 chrY 24625629 24625721 -26887863 - MIR SINE MIR -87 175 82 335 340 162 11 chrY 24625901 24626172 -26887412 + L2 LINE L2 2890 3201 -112 733 191 112 18 chrY 24626181 24626422 -26887162 + AluJb SINE Alu 1 307 -5 345 100 0 0 chrY 24627437 24627487 -26886097 + (TG)n Simple_repeat Simple_repeat 1 50 0 206 128 26 0 chrY 24627646 24627685 -26885899 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 873 218 0 29 chrY 24627707 24627881 -26885703 - FAM SINE Alu -3 172 4 5376 111 27 1 chrY 24627957 24628816 -26884768 + L1PA14 LINE L1 5280 6160 -1 2179 112 6 3 chrY 24628951 24629263 -26884321 + AluSq SINE Alu 1 313 0 23 78 0 0 chrY 24629462 24629513 -26884071 + AT_rich Low_complexity Low_complexity 1 51 0 204 257 86 14 chrY 24629766 24629836 -26883748 + L2 LINE L2 3239 3313 0 560 321 94 48 chrY 24629926 24630464 -26883120 + L2 LINE L2 2716 3271 -1 804 346 36 24 chrY 24631589 24632008 -26881576 + MLT1E LTR MaLR 22 445 -148 533 289 99 51 chrY 24632088 24632541 -26881043 + L1ME3A LINE L1 347 821 -5298 257 271 149 0 chrY 24633224 24633331 -26880253 - L2 LINE L2 -871 2443 2321 255 296 41 36 chrY 24633776 24633972 -26879612 + MER65A LTR ERV1 249 445 0 301 342 8 0 chrY 24633978 24634095 -26879489 - L1M4 LINE L1 -2505 3641 3524 1109 303 72 13 chrY 24634259 24634916 -26878668 + L2 LINE L2 2616 3309 -4 470 228 16 31 chrY 24634916 24635109 -26878475 + L1ME3A LINE L1 3777 3966 -2163 427 278 155 63 chrY 24635109 24635492 -26878092 + L1ME3A LINE L1 4491 4908 -1221 770 223 29 38 chrY 24635495 24635733 -26877851 + MLT1D LTR MaLR 1 236 -390 39164 47 23 3 chrY 24635733 24641800 -26871784 + L1PA2 LINE L1 2 6155 0 970 244 11 15 chrY 24641801 24642063 -26871521 + MLT1D LTR MaLR 235 495 -10 305 248 152 8 chrY 24642206 24642331 -26871253 + L1ME3A LINE L1 5087 5229 -900 867 289 68 24 chrY 24642345 24643005 -26870579 + L1ME3A LINE L1 5242 5930 -223 203 286 12 12 chrY 24643363 24643447 -26870137 + (TA)n Simple_repeat Simple_repeat 1 84 0 2115 129 31 47 chrY 24643534 24643915 -26869669 - THE1C LTR MaLR 0 375 1 48 0 0 0 chrY 24644940 24644988 -26868596 + AT_rich Low_complexity Low_complexity 1 48 0 2424 91 0 0 chrY 24645122 24645431 -26868153 - AluY SINE Alu -2 309 1 38 75 0 0 chrY 24645503 24645583 -26868001 + AT_rich Low_complexity Low_complexity 1 80 0 215 189 19 0 chrY 24646948 24647001 -26866583 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 541 135 0 0 chrY 24647040 24647136 -26866448 + L1MA5 LINE L1 6200 6295 -5 184 167 19 19 chrY 24647281 24647335 -26866249 + (TA)n Simple_repeat Simple_repeat 1 54 0 523 257 0 9 chrY 24647614 24647727 -26865857 + L2 LINE L2 3197 3308 -5 489 379 44 26 chrY 24647738 24648288 -26865296 + L2 LINE L2 2710 3270 -2 1913 169 17 0 chrY 24648451 24648753 -26864831 + AluJb SINE Alu 1 307 -5 21 71 0 0 chrY 24649897 24649939 -26863645 + AT_rich Low_complexity Low_complexity 1 42 0 970 141 6 0 chrY 24649939 24650116 -26863468 + L1MA5 LINE L1 6123 6300 0 1328 211 48 36 chrY 24650118 24650880 -26862704 + L1M4c LINE L1 1451 2313 -4071 21 36 0 0 chrY 24651007 24651035 -26862549 + AT_rich Low_complexity Low_complexity 1 28 0 190 105 79 0 chrY 24651170 24651208 -26862376 + L2 LINE L2 2665 2705 -609 371 236 109 36 chrY 24651421 24651531 -26862053 - L2 LINE L2 -1 3312 3195 1969 131 0 0 chrY 24651658 24651925 -26861659 - AluSx SINE Alu -45 267 1 291 285 30 75 chrY 24652362 24652469 -26861115 - L2 LINE L2 -5 3308 3213 2335 112 0 0 chrY 24652469 24652782 -26860802 - AluSq SINE Alu 0 313 1 291 285 30 75 chrY 24652782 24652874 -26860710 - L2 LINE L2 -100 3213 3118 1816 119 3 65 chrY 24653269 24653562 -26860022 - AluSx SINE Alu -1 311 37 691 139 0 19 chrY 24653564 24653672 -26859912 - FLAM_C SINE Alu -9 134 29 665 168 0 0 chrY 24653676 24653777 -26859807 + FLAM_C SINE Alu 3 103 -40 861 231 19 0 chrY 24653778 24653884 -26859700 + L1M2 LINE L1 1967 2070 -4779 2140 124 3 22 chrY 24653884 24654199 -26859385 + AluSg SINE Alu 1 309 -1 861 231 19 0 chrY 24654199 24654658 -26858926 + L1M2 LINE L1 2070 2623 -4226 440 155 13 3 chrY 24654666 24654894 -26858690 + AluSq SINE Alu 6 312 -1 200 191 11 79 chrY 24657656 24657745 -26855839 + (CCCTG)n Simple_repeat Simple_repeat 3 85 0 2018 125 0 0 chrY 24657982 24658285 -26855299 - AluSg SINE Alu -7 303 1 378 191 13 4 chrY 24660315 24660405 -26853179 + AluJ/FRAM SINE Alu 223 298 -4 446 263 54 67 chrY 24660405 24660517 -26853067 - L2 LINE L2 -94 3219 3110 1492 199 3 17 chrY 24660517 24660796 -26852788 + AluJo SINE Alu 5 281 -31 441 0 0 0 chrY 24660796 24660845 -26852739 + (CA)n Simple_repeat Simple_repeat 2 50 0 1492 199 3 17 chrY 24660845 24660867 -26852717 + AluJo SINE Alu 281 302 -10 446 263 54 67 chrY 24660867 24660978 -26852606 - L2 LINE L2 -203 3110 2999 1056 261 134 29 chrY 24661051 24661527 -26852057 - MLT1K LTR MaLR -7 581 56 321 336 156 28 chrY 24662023 24662234 -26851350 + MIR SINE MIR 25 262 0 365 324 181 9 chrY 24662380 24662596 -26850988 + MIR SINE MIR 4 256 -6 274 358 45 15 chrY 24662780 24662914 -26850670 - L2 LINE L2 -6 3266 3129 294 240 47 70 chrY 24663644 24663773 -26849811 + MIR SINE MIR 136 261 -1 28 71 0 0 chrY 24664093 24664149 -26849435 + AT_rich Low_complexity Low_complexity 1 56 0 526 227 147 0 chrY 24664193 24664343 -26849241 + MIR SINE MIR 62 233 -29 426 261 203 0 chrY 24664729 24664882 -26848702 + MIR3 SINE MIR 22 205 -3 39 0 0 20 chrY 24665678 24665712 -26847872 + AT_rich Low_complexity Low_complexity 1 35 -14 1997 122 0 3 chrY 24665712 24666000 -26847584 - AluSx SINE Alu -25 287 1 39 0 0 20 chrY 24666000 24666015 -26847569 + AT_rich Low_complexity Low_complexity 35 49 0 552 126 0 32 chrY 24666015 24666110 -26847474 - AluJ/FRAM SINE Alu 0 312 221 470 308 48 7 chrY 24666112 24666258 -26847326 - MIR SINE MIR -99 163 12 2303 84 0 7 chrY 24666616 24666926 -26846658 - AluY SINE Alu -3 308 1 298 294 0 0 chrY 24666931 24666999 -26846585 - L2 LINE L2 0 3272 3205 1934 144 0 0 chrY 24667148 24667439 -26846145 - AluSx SINE Alu -21 291 1 210 71 0 0 chrY 24667521 24667549 -26846035 + (CAT)n Simple_repeat Simple_repeat 2 29 0 746 232 103 5 chrY 24667579 24667764 -26845820 - MIR SINE MIR -29 233 31 2414 74 0 0 chrY 24668061 24668372 -26845212 - AluY SINE Alu 0 311 1 340 298 73 34 chrY 24668628 24668806 -26844778 - L1MEd LINE L1 -5933 186 2 477 273 73 7 chrY 24668810 24668960 -26844624 - MIR SINE MIR -69 193 34 317 272 82 34 chrY 24670143 24670290 -26843294 - L1ME4a LINE L1 -6 6115 5962 227 217 0 0 chrY 24670312 24670358 -26843226 + T-rich Low_complexity Low_complexity 1 46 0 2253 108 0 0 chrY 24670775 24671081 -26842503 - AluSq SINE Alu -7 306 1 327 231 130 28 chrY 24672292 24672400 -26841184 + L1MC4 LINE L1 6582 6700 -1342 206 190 0 35 chrY 24673117 24673175 -26840409 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 505 215 111 22 chrY 24673359 24673494 -26840090 - MIR3 SINE MIR -45 163 17 217 311 10 19 chrY 24674059 24674162 -26839422 + (CA)n Simple_repeat Simple_repeat 1 102 0 283 263 40 0 chrY 24674594 24674693 -26838891 + GA-rich Low_complexity Low_complexity 1 103 0 252 286 8 40 chrY 24675110 24675236 -26838348 + GA-rich Low_complexity Low_complexity 6 127 0 185 269 65 21 chrY 24675445 24675538 -26838046 + MIR3 SINE MIR 81 177 -31 357 283 80 44 chrY 24678241 24678467 -26835117 - L2 LINE L2 -27 3245 3012 229 267 46 51 chrY 24678894 24679089 -26834495 + L2 LINE L2 2454 2647 -667 475 257 40 13 chrY 24679305 24679457 -26834127 - MER103 DNA DNA -1 165 10 457 279 44 0 chrY 24679690 24679826 -26833758 + Charlie8 DNA MER1_type 24 165 -2252 2139 90 7 0 chrY 24679828 24680129 -26833455 + AluY SINE Alu 1 303 -8 11041 187 51 6 chrY 24681284 24683871 -26829713 + HERVK LTR ERVK 2807 5534 -1709 1267 232 68 0 chrY 24684094 24684483 -26829101 + HERVK LTR ERVK 5533 5900 -1343 27 29 0 0 chrY 24684708 24684742 -26828842 + AT_rich Low_complexity Low_complexity 1 34 0 1962 226 77 26 chrY 24684784 24685398 -26828186 - LTR5 LTR ERVK -324 645 1 1997 148 26 50 chrY 24685966 24686350 -26827234 + THE1C LTR MaLR 1 375 0 21 71 0 0 chrY 24687673 24687715 -26825869 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chrY 24687755 24687778 -26825806 + AT_rich Low_complexity Low_complexity 1 23 0 267 31 0 0 chrY 24688348 24688380 -26825204 + (TTG)n Simple_repeat Simple_repeat 2 33 0 279 79 0 0 chrY 24689290 24689328 -26824256 + (TG)n Simple_repeat Simple_repeat 1 38 0 864 104 30 8 chrY 24690289 24690423 -26823161 - AluSq/x SINE Alu -173 139 3 378 0 0 0 chrY 24690750 24690792 -26822792 + (TG)n Simple_repeat Simple_repeat 2 43 0 1975 139 3 0 chrY 24690956 24691257 -26822327 - AluSg SINE Alu -8 302 1 373 298 178 40 chrY 24692103 24692378 -26821206 - L1ME4a LINE L1 -31 6090 5778 204 185 0 0 chrY 24692415 24692469 -26821115 + (TG)n Simple_repeat Simple_repeat 2 55 0 2091 121 0 0 chrY 24692603 24692893 -26820691 - AluSq SINE Alu -23 290 1 733 215 233 9 chrY 24693369 24693695 -26819889 - Charlie1a DNA MER1_type 0 1455 1057 1074 191 0 14 chrY 24693718 24693938 -26819646 - AluJb SINE Alu -9 303 87 2279 193 174 40 chrY 24693942 24694508 -26819076 - Charlie1a DNA MER1_type -1847 914 222 1687 182 0 3 chrY 24694508 24694805 -26818779 - AluJb SINE Alu -16 296 1 2279 193 174 40 chrY 24694805 24694986 -26818598 - Charlie1a DNA MER1_type -2539 222 67 2096 112 7 0 chrY 24695362 24695665 -26817919 + AluY SINE Alu 1 305 -6 1906 134 13 3 chrY 24695809 24696115 -26817469 - AluSc SINE Alu 0 309 1 1509 255 121 20 chrY 24696419 24696956 -26816628 - MLT1E LTR MaLR 0 593 3 382 222 63 75 chrY 24697776 24698015 -26815569 - L1ME4a LINE L1 -4 6117 5882 2175 102 0 3 chrY 24698018 24698321 -26815263 - AluY SINE Alu -9 302 1 523 326 132 36 chrY 24698379 24698744 -26814840 + L1M4 LINE L1 4188 4587 -1559 352 222 0 0 chrY 24698748 24698811 -26814773 + AluS SINE Alu 2 64 -239 993 179 0 6 chrY 24698811 24698990 -26814594 + AluJb SINE Alu 132 309 -3 305 159 58 43 chrY 24699027 24699096 -26814488 + L1MCa LINE L1 1998 2067 -4359 805 113 0 0 chrY 24699550 24699656 -26813928 + FLAM_C SINE Alu 2 107 -36 186 43 0 0 chrY 24699656 24699679 -26813905 + (TC)n Simple_repeat Simple_repeat 1 23 0 195 114 0 0 chrY 24699680 24699715 -26813869 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 219 69 0 0 chrY 24699942 24699971 -26813613 + (CATA)n Simple_repeat Simple_repeat 4 32 0 300 256 68 34 chrY 24700193 24700310 -26813274 + L2 LINE L2 1903 2023 -1291 359 353 78 60 chrY 24700312 24700530 -26813054 + L1MC4a LINE L1 5752 5973 -1835 211 305 145 15 chrY 24700777 24700908 -26812676 + L2 LINE L2 2150 2297 -1017 2066 106 3 0 chrY 24701217 24701530 -26812054 - AluSq SINE Alu 0 314 1 3326 99 32 8 chrY 24701594 24702067 -26811517 - LTR15 LTR ERV1 -9 484 1 224 314 127 0 chrY 24702649 24702767 -26810817 - MIR SINE MIR -49 213 81 255 61 0 0 chrY 24702875 24702908 -26810676 + (T)n Simple_repeat Simple_repeat 1 33 0 262 235 15 0 chrY 24703767 24703835 -26809749 - HAL1 LINE L1 -196 2311 2243 21 0 0 0 chrY 24703995 24704016 -26809568 + AT_rich Low_complexity Low_complexity 1 21 0 375 304 132 21 chrY 24704045 24704288 -26809296 - HAL1 LINE L1 -604 1903 1634 844 234 9 51 chrY 24704300 24704514 -26809070 + MIR SINE MIR 28 232 -30 910 239 102 33 chrY 24704544 24704938 -26808646 - HAL1 LINE L1 -877 1630 1210 473 261 116 70 chrY 24705054 24705555 -26808029 - MLT1F LTR MaLR 0 542 19 249 253 94 20 chrY 24705573 24705775 -26807809 - HAL1 LINE L1 -1437 1070 854 2001 125 20 0 chrY 24705802 24706097 -26807487 - AluSp SINE Alu -12 301 1 226 273 101 50 chrY 24706116 24706164 -26807420 - HAL1 LINE L1 -1660 847 803 1604 182 7 52 chrY 24706164 24706462 -26807122 + AluJb SINE Alu 3 304 -8 232 61 0 0 chrY 24706462 24706495 -26807089 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 226 273 101 50 chrY 24706504 24706554 -26807030 - HAL1 LINE L1 -1704 803 744 388 308 66 59 chrY 24706639 24707084 -26806500 - HAL1 LINE L1 -2044 463 23 970 185 42 28 chrY 24707445 24707661 -26805923 + MER20 DNA MER1_type 1 219 0 403 257 147 110 chrY 24707727 24708141 -26805443 - L1 LINE L1 -2757 3389 2963 35979 50 2 0 chrY 24708143 24713580 -26800004 - L1PA4 LINE L1 0 6155 707 7095 34 2 0 chrY 24714062 24714946 -26798638 - L1PA2 LINE L1 -4 6151 5266 327 257 161 32 chrY 24714967 24715390 -26798194 - L1M3 LINE L1 -467 5654 5189 548 145 22 46 chrY 24715421 24715657 -26797927 + CT-rich Low_complexity Low_complexity 1 230 0 1556 194 7 4 chrY 24715771 24716044 -26797540 - AluJo SINE Alu -38 274 1 752 178 8 0 chrY 24716795 24716924 -26796660 - MER5A DNA MER1_type -58 131 2 2160 126 0 0 chrY 24717260 24717567 -26796017 - AluSx SINE Alu 0 307 1 7157 33 14 0 chrY 24718901 24719951 -26793633 - L1PA3 LINE L1 0 6155 5105 268 331 43 51 chrY 24720791 24721048 -26792536 + MIR SINE MIR 5 259 -3 298 289 141 7 chrY 24721926 24722068 -26791516 + MIR3 SINE MIR 31 191 -17 253 241 167 28 chrY 24722074 24722182 -26791402 + L2 LINE L2 3188 3310 -3 222 245 38 0 chrY 24722513 24722566 -26791018 + MIR SINE MIR 95 149 -59 198 0 0 0 chrY 24722707 24722729 -26790855 + (T)n Simple_repeat Simple_repeat 1 22 0 189 217 4 0 chrY 24723182 24723227 -26790357 + MIR SINE MIR 100 146 -62 1748 166 10 39 chrY 24723762 24724070 -26789514 + AluSx SINE Alu 6 304 -8 206 296 204 0 chrY 24724125 24724257 -26789327 + MIR SINE MIR 98 256 -6 1014 178 141 0 chrY 24725012 24725203 -26788381 + 7SLRNA srpRNA srpRNA 95 312 -8 217 317 79 0 chrY 24728605 24728706 -26784878 - MIR SINE MIR -70 192 84 186 43 0 0 chrY 24729472 24729495 -26784089 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 251 282 70 14 chrY 24729521 24729592 -26783992 - MIR SINE MIR -177 85 11 414 0 0 0 chrY 24729893 24729939 -26783645 + (CA)n Simple_repeat Simple_repeat 2 47 0 1155 115 6 0 chrY 24731032 24731188 -26782396 + AluSq SINE Alu 1 157 -156 2009 89 14 38 chrY 24731188 24731480 -26782104 - AluSx SINE Alu -25 287 3 261 0 0 0 chrY 24732615 24732644 -26780940 + (TG)n Simple_repeat Simple_repeat 2 30 0 2222 133 3 0 chrY 24732806 24733108 -26780476 - AluSg SINE Alu -7 303 1 393 272 185 44 chrY 24733917 24734215 -26779369 - L1ME4a LINE L1 -4 6117 5778 2379 102 16 3 chrY 24734421 24734726 -26778858 - AluSx SINE Alu -3 309 1 752 216 143 65 chrY 24735201 24735571 -26778013 - Charlie1a DNA MER1_type 0 1455 1057 1305 167 0 10 chrY 24735602 24735806 -26777778 - AluJb SINE Alu -24 288 87 1965 188 141 91 chrY 24735810 24736379 -26777205 - Charlie1a DNA MER1_type -1847 914 375 1868 164 0 14 chrY 24736379 24736671 -26776913 - AluJb SINE Alu -12 300 13 1965 188 141 91 chrY 24736671 24736729 -26776855 - Charlie1a DNA MER1_type -2386 375 321 1965 162 0 3 chrY 24736729 24737026 -26776558 - AluSx SINE Alu -12 300 5 1965 188 141 91 chrY 24737026 24737204 -26776380 - Charlie1a DNA MER1_type -2440 321 67 22 35 0 0 chrY 24737306 24737335 -26776249 + AT_rich Low_complexity Low_complexity 1 29 0 2451 97 3 3 chrY 24737585 24737896 -26775688 + AluSp SINE Alu 1 311 -2 2162 112 6 16 chrY 24738047 24738359 -26775225 - AluSc SINE Alu 0 309 1 1257 244 136 25 chrY 24738734 24739262 -26774322 - MLT1E LTR MaLR -4 589 3 485 221 141 61 chrY 24740085 24740298 -26773286 - L1ME4a LINE L1 -1 6120 5891 2149 125 0 0 chrY 24740301 24740590 -26772994 + AluSg SINE Alu 1 289 -21 210 287 0 0 chrY 24740599 24740686 -26772898 + (CA)n Simple_repeat Simple_repeat 2 88 0 2656 94 15 82 chrY 24741848 24742324 -26771260 + MLT2A1 LTR ERVL 1 444 0 418 264 27 0 chrY 24742363 24742473 -26771111 + MER63 DNA MER1_type 3 741 -321 292 222 16 0 chrY 24742476 24742539 -26771045 + MER63 DNA MER1_type 990 1053 -9 209 294 59 0 chrY 24744507 24744575 -26769009 + MIR SINE MIR 74 145 -63 745 184 0 29 chrY 24745087 24745223 -26768361 + FLAM_C SINE Alu 2 133 0 229 321 64 0 chrY 24745840 24745949 -26767635 + L2 LINE L2 3156 3271 -1 268 222 111 0 chrY 24749919 24750000 -26763584 - MER5A DNA MER1_type -53 136 47 269 309 56 16 chrY 24750322 24750448 -26763136 - L2 LINE L2 -223 3049 2919 260 330 9 27 chrY 24751951 24752063 -26761521 - MIR SINE MIR -122 140 31 1508 114 37 33 chrY 24752112 24752357 -26761227 + AluJb SINE Alu 35 280 -32 227 232 29 29 chrY 24752439 24752508 -26761076 + MIR SINE MIR 85 153 -55 251 340 48 15 chrY 24754353 24754536 -26759048 + MIR3 SINE MIR 5 192 -57 261 83 0 0 chrY 24757085 24757121 -26756463 + (CA)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chrY 24758029 24758049 -26755535 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chrY 24758612 24758634 -26754950 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chrY 24759188 24759217 -26754367 + AT_rich Low_complexity Low_complexity 1 29 0 285 347 145 5 chrY 24762380 24762573 -26751011 - MIR SINE MIR -6 256 37 249 33 0 0 chrY 24762574 24762604 -26750980 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1907 111 0 32 chrY 24762608 24762888 -26750696 - AluSx SINE Alu -37 275 5 236 211 39 0 chrY 24764275 24764327 -26749257 - MIR SINE MIR -59 149 96 234 244 49 37 chrY 24764699 24764781 -26748803 - LTR48 LTR ERV1 -646 141 59 236 328 142 0 chrY 24764781 24764915 -26748669 - MIR3 SINE MIR -25 183 31 241 282 13 13 chrY 24765914 24765992 -26747592 - MIR SINE MIR -58 150 73 207 280 40 40 chrY 24766441 24766516 -26747068 - MIR3 SINE MIR -133 75 1 2160 110 0 0 chrY 24768692 24769004 -26744580 + AluSx SINE Alu 1 312 0 911 188 7 0 chrY 24769340 24769494 -26744090 + MER5A DNA MER1_type 2 156 -33 1539 194 4 4 chrY 24770239 24770512 -26743072 + AluJo SINE Alu 2 274 -38 321 150 0 38 chrY 24770626 24770706 -26742878 + (GAAA)n Simple_repeat Simple_repeat 1 77 0 576 169 17 28 chrY 24770712 24770889 -26742695 + GA-rich Low_complexity Low_complexity 3 177 0 372 261 152 31 chrY 24770915 24771376 -26742208 + L1MB7 LINE L1 5189 5701 -469 2868 10 0 0 chrY 24771378 24771687 -26741897 + AluYa5 SINE Alu 1 309 -2 261 221 47 23 chrY 24771725 24771811 -26741773 + L1MB7 LINE L1 5798 5885 -236 966 235 70 35 chrY 24772456 24772797 -26740787 - L1MC4a LINE L1 -1765 6043 5691 558 177 21 85 chrY 24773296 24773437 -26740147 - FLAM_C SINE Alu 0 133 2 193 321 28 46 chrY 24773938 24774040 -26739544 + L2 LINE L2 2926 3027 -245 2077 148 0 0 chrY 24774040 24774338 -26739246 + AluSx SINE Alu 1 298 -14 374 310 93 39 chrY 24774419 24774548 -26739036 - L2 LINE L2 -15 3257 3122 268 259 47 0 chrY 24774746 24774831 -26738753 - MIR SINE MIR -114 148 60 227 255 0 0 chrY 24775037 24775088 -26738496 + L2 LINE L2 2237 2287 -1027 250 286 124 19 chrY 24775088 24775193 -26738391 + L2 LINE L2 3180 3295 -18 216 135 0 0 chrY 24775355 24775392 -26738192 + (GA)n Simple_repeat Simple_repeat 2 38 0 511 298 120 43 chrY 24775399 24776165 -26737419 - L1MEd LINE L1 -3193 2936 2112 500 276 76 101 chrY 24776221 24776431 -26737153 - L1MEd LINE L1 -4968 1151 937 1311 163 39 102 chrY 24776431 24776763 -26736821 - AluJb SINE Alu -1 311 1 500 276 76 101 chrY 24776763 24777158 -26736426 - L1MEd LINE L1 -5182 937 561 216 0 0 0 chrY 24777577 24777601 -26735983 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 479 196 135 74 chrY 24777737 24777901 -26735683 + MIR SINE MIR 30 198 -64 21 36 0 0 chrY 24777935 24777963 -26735621 + AT_rich Low_complexity Low_complexity 1 28 0 2234 73 0 7 chrY 24778722 24779008 -26734576 - AluY SINE Alu 0 311 28 1610 164 17 21 chrY 24781283 24781570 -26732014 + L1MB7 LINE L1 5881 6166 -18 1920 155 3 7 chrY 24782406 24782709 -26730875 - AluSx SINE Alu -10 302 1 21 0 0 0 chrY 24784093 24784114 -26729470 + AT_rich Low_complexity Low_complexity 1 21 0 1486 211 3 3 chrY 24784126 24784415 -26729169 + AluJb SINE Alu 1 289 -23 360 218 0 0 chrY 24785227 24785314 -26728270 + (TATG)n Simple_repeat Simple_repeat 3 89 0 646 189 196 0 chrY 24785356 24785499 -26728085 + MER5A DNA MER1_type 1 171 -18 802 161 0 0 chrY 24785520 24785644 -26727940 + FLAM_C SINE Alu 3 126 -17 21 36 0 0 chrY 24785644 24785672 -26727912 + AT_rich Low_complexity Low_complexity 1 28 0 243 186 71 43 chrY 24786043 24786113 -26727471 + L1MEd LINE L1 17 88 -6031 346 276 135 39 chrY 24786381 24786953 -26726631 + L1MEd LINE L1 569 1209 -4910 259 311 197 16 chrY 24786990 24787173 -26726411 + L1MEd LINE L1 1398 1821 -4309 190 303 138 28 chrY 24787347 24787456 -26726128 - L3b LINE CR1 -11 1572 1452 582 299 61 58 chrY 24787465 24787810 -26725774 - L3 LINE CR1 -177 1400 1055 2125 141 0 0 chrY 24788416 24788722 -26724862 - AluSq SINE Alu -7 306 1 332 303 46 51 chrY 24789257 24789432 -26724152 - L1ME3A LINE L1 -10 6160 5987 606 235 0 0 chrY 24789535 24789654 -26723930 - MER106A DNA MER1_type -117 119 1 873 250 136 6 chrY 24789667 24790038 -26723546 - L1MC4 LINE L1 -373 5797 5521 21 36 0 0 chrY 24790178 24790206 -26723378 + AT_rich Low_complexity Low_complexity 1 28 0 866 183 0 65 chrY 24790620 24790789 -26722795 - AluJb SINE Alu -9 303 146 1797 161 0 11 chrY 24791408 24791723 -26721861 + AluSx SINE Alu 1 312 0 238 314 94 38 chrY 24792242 24792401 -26721183 + MIR SINE MIR 68 235 -27 222 294 71 32 chrY 24792784 24792910 -26720674 - MIR SINE MIR -25 237 107 1553 208 0 10 chrY 24793256 24793545 -26720039 + AluJo SINE Alu 1 286 -26 1967 158 0 7 chrY 24794095 24794399 -26719185 - AluSx SINE Alu -10 302 1 341 327 77 19 chrY 24794429 24794637 -26718947 + L1ME LINE L1 5558 5777 -344 743 171 34 0 chrY 24794932 24795049 -26718535 + FRAM SINE Alu 31 151 -25 1487 139 112 0 chrY 24796065 24796180 -26717404 + AluJo SINE Alu 1 102 -210 364 19 38 0 chrY 24796180 24796233 -26717351 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 1487 139 112 0 chrY 24796233 24796384 -26717200 + AluJo SINE Alu 102 297 -15 982 241 129 59 chrY 24796688 24797029 -26716555 + MLT1A1 LTR MaLR 1 365 0 1970 116 4 0 chrY 24797442 24797710 -26715874 - AluSx SINE Alu -11 301 33 7796 109 2 0 chrY 24797711 24798786 -26714798 - L1P LINE L1 -5069 1077 1 1536 278 21 43 chrY 24798788 24799364 -26714220 + LTR25-int LTR ERV1 863 1425 -5571 369 0 0 0 chrY 24799378 24799419 -26714165 + (TG)n Simple_repeat Simple_repeat 2 42 0 253 297 11 0 chrY 24799449 24799540 -26714044 + L1MC4 LINE L1 6614 6705 -1337 * 259 250 11 43 chrY 24799463 24799555 -26714029 - L1MC4 LINE L1 -1339 6703 6615 192 179 0 0 chrY 24799608 24799647 -26713937 + (TATG)n Simple_repeat Simple_repeat 2 40 0 232 220 0 0 chrY 24799655 24799705 -26713879 + L1MC4 LINE L1 6653 6702 -1340 274 222 19 56 chrY 24799754 24799862 -26713722 + L1MC4 LINE L1 6599 6702 -1340 248 264 11 22 chrY 24799782 24799873 -26713711 - L1MC4 LINE L1 -1339 6703 6614 * 17629 212 67 29 chrY 24799961 24804133 -26709451 + HERVK3 LTR ERVK 2911 7241 -2 2099 155 58 48 chrY 24804135 24804568 -26709016 + LTR3b LTR ERVK 1 437 0 834 225 0 0 chrY 24804618 24804809 -26708775 + AluSg/x SINE Alu 119 309 -1 269 260 214 7 chrY 24804851 24805005 -26708579 + L1MB5 LINE L1 5186 5371 -775 1337 204 7 26 chrY 24805376 24805680 -26707904 + AluSx SINE Alu 1 298 -14 248 51 0 26 chrY 24806393 24806432 -26707152 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 7297 40 0 1 chrY 24806434 24807641 -26705943 - L1PA3 LINE L1 -27 6128 4923 2225 223 84 20 chrY 24808713 24809418 -26704166 + L1MB5 LINE L1 5415 6164 -10 1107 190 23 9 chrY 24809589 24809810 -26703774 - MER50 LTR ERV1 0 734 511 552 249 12 12 chrY 24809818 24809991 -26703593 - L1M4 LINE L1 -901 5245 5073 * 648 167 130 57 chrY 24809970 24810089 -26703495 + L1MB3 LINE L1 5354 5494 -680 216 0 0 0 chrY 24810089 24810113 -26703471 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 648 167 130 57 chrY 24810113 24810185 -26703399 + L1MB3 LINE L1 5494 5559 -615 317 206 93 10 chrY 24810179 24810276 -26703308 + L1MB3 LINE L1 6068 6172 -11 * 1395 253 67 51 chrY 24810463 24811116 -26702468 - L1MC3 LINE L1 -148 6018 5371 7113 39 8 4 chrY 24811227 24812795 -26700789 + L1PA3 LINE L1 4551 6128 -27 248 51 0 26 chrY 24812797 24812836 -26700748 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 1330 204 7 26 chrY 24813547 24813851 -26699733 - AluSx SINE Alu -14 298 1 238 273 214 7 chrY 24814222 24814376 -26699208 - L1MC3 LINE L1 -775 5371 5186 833 225 0 0 chrY 24814418 24814609 -26698975 - AluSg/x SINE Alu -1 311 121 2051 155 58 48 chrY 24814659 24815092 -26698492 - LTR3b LTR ERVK 0 437 1 17027 215 67 29 chrY 24815094 24819264 -26694320 - HERVK3 LTR ERVK -2 7241 2913 210 71 0 0 chrY 24819334 24819362 -26694222 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 252 222 19 56 chrY 24819365 24819473 -26694111 - L1MC4 LINE L1 -1340 6702 6599 303 285 11 6 chrY 24819540 24819719 -26693865 + (TA)n Simple_repeat Simple_repeat 1 180 0 228 164 55 0 chrY 24819722 24819777 -26693807 + L1MCa LINE L1 2007 2064 -4362 23 0 0 29 chrY 24819792 24819806 -26693778 + AT_rich Low_complexity Low_complexity 1 14 -19 333 0 0 0 chrY 24819806 24819843 -26693741 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 29 chrY 24819843 24819862 -26693722 + AT_rich Low_complexity Low_complexity 14 33 0 1497 286 18 37 chrY 24819865 24820435 -26693149 - LTR25-int LTR ERV1 -5575 1421 863 38717 76 18 3 chrY 24820437 24825676 -26687908 + L1PA4 LINE L1 1 5354 -801 2781 22 0 0 chrY 24825676 24825987 -26687597 - AluYa5 SINE Alu 0 311 1 38717 76 18 3 chrY 24825987 24826802 -26686782 + L1PA4 LINE L1 5354 6155 0 3937 214 6 12 chrY 24826801 24827776 -26685808 - L1P LINE L1 -3850 2296 1267 * 735 169 0 0 chrY 24827793 24827911 -26685673 - AluSc SINE Alu -25 284 167 2615 320 23 27 chrY 24827913 24828851 -26684733 + MER52A LTR ERV1 923 1755 0 578 264 0 0 chrY 24828861 24828990 -26684594 + MER21B LTR ERV1 248 376 -487 27 0 0 0 chrY 24829457 24829484 -26684100 + AT_rich Low_complexity Low_complexity 1 27 0 1681 185 3 7 chrY 24829575 24829872 -26683712 + AluY SINE Alu 3 298 -13 1831 180 0 0 chrY 24831576 24831870 -26681714 - AluSg SINE Alu -14 296 3 1488 275 117 6 chrY 24832396 24833200 -26680384 - L1M4c LINE L1 -4182 2202 1312 350 251 123 59 chrY 24833213 24833258 -26680326 - L1M4c LINE L1 -5135 1249 1208 240 35 0 0 chrY 24833258 24833287 -26680297 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 350 251 123 59 chrY 24833287 24833384 -26680200 - L1M4c LINE L1 -5176 1208 1090 1757 175 10 3 chrY 24833384 24833676 -26679908 - AluSc SINE Alu -15 294 1 350 251 123 59 chrY 24833676 24833719 -26679865 - L1M4c LINE L1 -5294 1090 1051 371 153 53 0 chrY 24833719 24833850 -26679734 + (TA)n Simple_repeat Simple_repeat 1 138 0 279 0 0 0 chrY 24833921 24833952 -26679632 + (GA)n Simple_repeat Simple_repeat 2 32 0 1460 291 95 46 chrY 24834013 24834204 -26679380 - L1M4c LINE L1 -5340 1044 864 2401 53 23 3 chrY 24834204 24834507 -26679077 - AluY SINE Alu -2 309 1 1460 291 95 46 chrY 24834507 24835265 -26678319 - L1M4c LINE L1 -5520 864 49 472 299 113 72 chrY 24835322 24835807 -26677777 - L1M4c LINE L1 -3890 2494 1990 361 353 59 5 chrY 24836864 24837051 -26676533 - L2 LINE L2 -352 2962 2766 809 203 62 5 chrY 24838101 24838293 -26675291 - MLT2A1 LTR ERVL -241 203 1 2144 166 29 2 chrY 24838293 24838702 -26674882 - HERVL-A1 LTR ERVL 0 5654 5235 785 179 0 6 chrY 24838719 24838887 -26674697 + CT-rich Low_complexity Low_complexity 2 168 0 366 114 0 0 chrY 24838902 24838972 -26674612 + (GCTG)n Simple_repeat Simple_repeat 2 71 0 21287 164 16 3 chrY 24838975 24843340 -26670244 - HERVL-A1 LTR ERVL -429 5225 714 2539 282 10 2 chrY 24843340 24843935 -26669649 + MER52A LTR ERV1 1156 1755 0 378 266 108 29 chrY 24844276 24844415 -26669169 - MER20 DNA MER1_type -45 174 25 1633 135 24 64 chrY 24844485 24844810 -26668774 + AluSq SINE Alu 1 313 0 228 236 36 0 chrY 24844869 24844924 -26668660 + L1PA10 LINE L1 6101 6157 -11 1077 264 94 4 chrY 24845100 24845376 -26668208 - AluSx SINE Alu -1 301 1 2189 89 3 3 chrY 24846615 24846918 -26666666 + AluY SINE Alu 1 303 -8 30 0 0 0 chrY 24847193 24847223 -26666361 + AT_rich Low_complexity Low_complexity 1 30 0 316 327 117 19 chrY 24847416 24847621 -26665963 - L1MC4a LINE L1 -1860 5948 5724 26 30 0 0 chrY 24848413 24848446 -26665138 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chrY 24848677 24848711 -26664873 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chrY 24850619 24850650 -26662934 + AT_rich Low_complexity Low_complexity 1 31 0 560 189 0 0 chrY 24850835 24850930 -26662654 + AluJb SINE Alu 87 181 -131 356 216 22 7 chrY 24851163 24851302 -26662282 + (TA)n Simple_repeat Simple_repeat 1 141 0 617 297 6 28 chrY 24851315 24851497 -26662087 + AluJb SINE Alu 2 179 -133 257 111 0 0 chrY 24852088 24852124 -26661460 - Charlie3 DNA MER1_type -26 2684 2649 186 71 0 0 chrY 24852141 24852169 -26661415 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 26 30 0 0 chrY 24852177 24852210 -26661374 + AT_rich Low_complexity Low_complexity 1 33 0 1960 118 3 30 chrY 24853062 24853367 -26660217 - AluY SINE Alu -14 297 1 1179 195 0 13 chrY 24853397 24853633 -26659951 + AluSq SINE Alu 81 313 0 780 270 13 80 chrY 24854922 24855233 -26658351 + AluJo SINE Alu 6 295 -17 1039 228 120 30 chrY 24855468 24855802 -26657782 - THE1B LTR MaLR 0 364 1 3111 205 2 4 chrY 24855802 24856359 -26657225 - THE1B-int LTR MaLR 0 1580 1025 27 0 0 0 chrY 24857491 24857518 -26656066 + AT_rich Low_complexity Low_complexity 1 27 0 1051 247 98 11 chrY 24858815 24859090 -26654494 + AluSx SINE Alu 2 300 -2 185 0 0 39 chrY 24859239 24859265 -26654319 + (TTTAA)n Simple_repeat Simple_repeat 1 25 0 686 207 0 0 chrY 24859266 24859401 -26654183 - L1PA10 LINE L1 -12 6156 6022 1068 227 7 20 chrY 24859417 24859717 -26653867 - L1PA10 LINE L1 -390 5778 5483 308 250 10 21 chrY 24859821 24859917 -26653667 + MER20 DNA MER1_type 101 195 -24 3064 271 84 37 chrY 24860212 24861510 -26652074 - MER52A LTR ERV1 0 1755 645 755 196 7 7 chrY 24861510 24861663 -26651921 + MLT2A1 LTR ERVL 1 153 -291 8798 197 28 5 chrY 24861664 24863446 -26650138 + HERVL-A1 LTR ERVL 1378 3200 -2454 852 182 0 0 chrY 24863444 24863598 -26649986 + HERVL-A1 LTR ERVL 4503 4656 -998 * 2117 170 21 3 chrY 24863586 24863975 -26649609 + HERVL-A1 LTR ERVL 3201 3596 -2058 * 10368 156 8 22 chrY 24863969 24865840 -26647744 + HERVL-A1 LTR ERVL 3810 5654 0 1366 199 85 16 chrY 24865840 24866217 -26647367 + MLT2A1 LTR ERVL 1 403 -41 238 250 0 0 chrY 24866217 24866265 -26647319 + (CA)n Simple_repeat Simple_repeat 1 48 0 38980 67 2 11 chrY 24866319 24872525 -26641059 - L1PA4 LINE L1 -3 6152 3 33874 88 5 6 chrY 24872524 24877490 -26636094 - L1P LINE L1 -1141 5005 44 * 225 0 0 0 chrY 24877674 24877699 -26635885 + (A)n Simple_repeat Simple_repeat 1 25 0 192 152 0 0 chrY 24877974 24878007 -26635577 + (TAA)n Simple_repeat Simple_repeat 1 33 0 251 246 0 0 chrY 24879344 24879401 -26634183 - MER20 DNA MER1_type -73 146 90 326 284 55 47 chrY 24879447 24879574 -26634010 + L2 LINE L2 2766 2893 -421 311 355 129 44 chrY 24880313 24880676 -26632908 + L1M4 LINE L1 394 787 -5755 373 308 148 12 chrY 24880942 24881672 -26631912 + L1M4 LINE L1 1162 1990 -4656 1359 244 142 119 chrY 24882176 24882668 -26630916 + L1M4c LINE L1 23 502 -5882 318 50 0 0 chrY 24882668 24882708 -26630876 + (CA)n Simple_repeat Simple_repeat 1 40 0 1359 244 142 119 chrY 24882708 24884325 -26629259 + L1M4c LINE L1 502 2180 -4204 1836 149 3 27 chrY 24884753 24885079 -26628505 + AluY SINE Alu 1 319 0 325 153 34 0 chrY 24886356 24886415 -26627169 + LTR25 LTR ERV1 481 541 -253 * 1202 255 45 0 chrY 24886411 24886768 -26626816 + LTR25 LTR ERV1 422 794 0 1174 220 68 68 chrY 24886934 24887564 -26626020 + L1M4c LINE L1 1214 1941 -4443 2016 129 0 0 chrY 24887564 24887878 -26625706 + AluY SINE Alu 1 314 0 1174 220 68 68 chrY 24887878 24888134 -26625450 + L1M4c LINE L1 1941 2196 -4188 537 275 8 0 chrY 24890993 24891124 -26622460 - MER21B LTR ERV1 -485 378 247 1355 350 6 0 chrY 24891133 24891608 -26621976 - MER52A LTR ERV1 0 1755 1278 1605 270 22 54 chrY 24891619 24892345 -26621239 - LTR25-int LTR ERV1 -4448 2548 1846 228 139 0 0 chrY 24892508 24892544 -26621040 + MER61E LTR ERV1 120 155 -414 732 253 100 93 chrY 24892552 24893090 -26620494 + LTR25 LTR ERV1 253 794 0 1449 186 21 24 chrY 24893158 24893449 -26620135 + AluY SINE Alu 1 290 -21 5455 280 44 49 chrY 24893552 24896265 -26617319 + LTR25-int LTR ERV1 90 3052 -4226 2045 238 66 79 chrY 24896285 24896786 -26616798 - LTR25 LTR ERV1 0 794 305 216 0 0 0 chrY 24896786 24896810 -26616774 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2045 238 66 79 chrY 24896810 24897110 -26616474 - LTR25 LTR ERV1 -489 305 3 5193 259 37 39 chrY 24897112 24899782 -26613802 - HUERS-P3b LTR ERV1 0 6996 1750 3819 252 36 25 chrY 24899805 24900075 -26613509 - LTR25-int LTR ERV1 -2664 4332 4066 1598 188 35 3 chrY 24900075 24900362 -26613222 + AluSc SINE Alu 2 297 -12 3819 252 36 25 chrY 24900362 24901502 -26612082 - LTR25-int LTR ERV1 -2930 4066 2907 2404 234 16 110 chrY 24901590 24902466 -26611118 - LTR25 LTR ERV1 0 794 1 5009 284 53 43 chrY 24902466 24902533 -26611051 - LTR25-int LTR ERV1 -4221 2775 2710 360 0 0 0 chrY 24902533 24902573 -26611011 + (TTG)n Simple_repeat Simple_repeat 2 41 0 5009 284 53 43 chrY 24902573 24905465 -26608119 - LTR25-int LTR ERV1 -4286 2710 279 2452 233 30 91 chrY 24905615 24906461 -26607123 - LTR25 LTR ERV1 0 794 1 2959 288 12 22 chrY 24906462 24907397 -26606187 + HUERS-P3 LTR ERV1 2690 3614 -5305 341 213 38 0 chrY 24907402 24907482 -26606102 + HUERS-P3 LTR ERV1 5498 5580 -683 3379 196 25 45 chrY 24907482 24908484 -26605100 - MER11C LTR ERVK 0 1071 1 1628 264 29 17 chrY 24908489 24909092 -26604492 + HUERS-P3 LTR ERV1 3409 6171 -1034 640 303 36 18 chrY 24909071 24909333 -26604251 + HUERS-P3 LTR ERV1 4918 8896 -23 * 323 236 0 0 chrY 24909454 24909526 -26604058 + LTR25 LTR ERV1 222 293 -501 1229 276 92 12 chrY 24909553 24910056 -26603528 + LTR25 LTR ERV1 250 792 -2 3486 320 37 19 chrY 24910074 24911409 -26602175 - HUERS-P3 LTR ERV1 -5866 3053 1695 267 231 0 0 chrY 24911500 24911565 -26602019 + LTR25 LTR ERV1 220 284 -510 515 295 74 23 chrY 24911602 24911723 -26601861 + LTR25 LTR ERV1 247 360 -434 1488 23 0 0 chrY 24911723 24911899 -26601685 + (TTC)n Simple_repeat Simple_repeat 2 177 0 515 295 74 23 chrY 24911899 24911994 -26601590 + LTR25 LTR ERV1 360 474 -320 228 263 0 13 chrY 24912353 24912429 -26601155 - LTR25 LTR ERV1 -508 286 212 1309 328 30 24 chrY 24912512 24913147 -26600437 + LTR25-int LTR ERV1 1695 2333 -6586 2291 269 35 39 chrY 24913191 24914550 -26599034 + LTR25-int LTR ERV1 24 1416 -5580 282 160 0 0 chrY 24914563 24914613 -26598971 + (TA)n Simple_repeat Simple_repeat 1 50 0 238 187 110 55 chrY 24914615 24914706 -26598878 - L1MC4 LINE L1 -1333 6709 6614 226 153 34 34 chrY 24914693 24914752 -26598832 - L1MCa LINE L1 -4362 2064 2006 * 219 318 0 0 chrY 24914752 24914815 -26598769 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 244 185 37 0 chrY 24914815 24914869 -26598715 + L1MC4 LINE L1 6647 6702 -1340 236 214 0 102 chrY 24914986 24915084 -26598500 + L1MC4 LINE L1 6615 6702 -1340 303 294 16 16 chrY 24915085 24915211 -26598373 + (TA)n Simple_repeat Simple_repeat 2 127 0 234 222 62 49 chrY 24915212 24915293 -26598291 + L1MC4 LINE L1 6619 6700 -1342 17139 217 52 37 chrY 24915384 24919339 -26594245 + HERVK3 LTR ERVK 2913 6984 -259 297 45 0 0 chrY 24919339 24919383 -26594201 - L1PA2 LINE L1 0 6155 6112 17139 217 52 37 chrY 24919383 24919647 -26593937 + HERVK3 LTR ERVK 6984 7242 -1 2490 152 5 16 chrY 24919647 24920081 -26593503 + LTR3 LTR ERVK 1 429 0 841 193 5 66 chrY 24920084 24920297 -26593287 + AluSg/x SINE Alu 113 312 0 1441 194 19 13 chrY 24920833 24921142 -26592442 + AluSx SINE Alu 1 311 -1 1397 273 58 37 chrY 24921930 24922595 -26590989 + L1MC3 LINE L1 5372 6051 -308 336 186 34 93 chrY 24922773 24922891 -26590693 - L1MB3 LINE L1 -12 6171 6061 * 559 246 60 27 chrY 24922874 24923057 -26590527 - L1M4 LINE L1 -625 5559 5371 525 251 12 12 chrY 24923069 24923232 -26590352 + L1M4 LINE L1 5083 5245 -901 1036 201 32 9 chrY 24923240 24923459 -26590125 + MER50 LTR ERV1 511 734 0 1942 240 44 15 chrY 24923644 24924240 -26589344 - L1MB5 LINE L1 -20 6154 5542 406 282 10 30 chrY 24924523 24924827 -26588757 + (CCCTAA)n Simple_repeat Simple_repeat 1 297 0 226 290 0 51 chrY 24924860 24925036 -26588548 + (CCCTAA)n Simple_repeat Simple_repeat 1 167 0 286 200 0 20 chrY 24925071 24925171 -26588413 + (CCCTAA)n Simple_repeat Simple_repeat 5 102 0 361 302 6 22 chrY 24925203 24925385 -26588199 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 181 177 0 32 chrY 24925427 24925489 -26588095 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 236 280 0 53 chrY 24925585 24925774 -26587810 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 381 240 0 49 chrY 24925808 24925991 -26587593 + (CCCTAA)n Simple_repeat Simple_repeat 2 175 0 226 223 0 33 chrY 24926004 24926188 -26587396 + (CCCTAA)n Simple_repeat Simple_repeat 2 179 0 204 224 0 21 chrY 24926241 24926384 -26587200 + (CCCTAA)n Simple_repeat Simple_repeat 5 144 0 244 222 0 16 chrY 24926512 24926638 -26586946 + (CCCTAA)n Simple_repeat Simple_repeat 4 127 0 416 226 11 63 chrY 24926686 24926876 -26586708 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 212 247 25 12 chrY 24926887 24926968 -26586616 + (CCCTAA)n Simple_repeat Simple_repeat 4 85 0 300 188 0 27 chrY 24926981 24927093 -26586491 + (CCCTAA)n Simple_repeat Simple_repeat 1 109 0 410 209 0 62 chrY 24927195 24927372 -26586212 + (CCCTAA)n Simple_repeat Simple_repeat 4 169 0 395 164 8 25 chrY 24927389 24927511 -26586073 + (CCCTAA)n Simple_repeat Simple_repeat 6 125 0 349 277 114 37 chrY 24927968 24928342 -26585242 + L1 LINE L1 3914 4334 -1812 1308 172 15 105 chrY 24928342 24928674 -26584910 - AluY SINE Alu -9 302 1 349 277 114 37 chrY 24928674 24928756 -26584828 + L1 LINE L1 4334 4408 -1738 22 0 0 0 chrY 24929301 24929323 -26584261 + AT_rich Low_complexity Low_complexity 1 22 0 668 222 96 92 chrY 24929805 24930277 -26583307 + AluJb SINE Alu 19 312 0 180 0 0 0 chrY 24930583 24930603 -26582981 + (CAA)n Simple_repeat Simple_repeat 2 21 0 643 274 6 6 chrY 24930608 24930772 -26582812 + FRAM SINE Alu 1 164 -12 1429 293 114 11 chrY 24930810 24931679 -26581905 + L1 LINE L1 4436 5393 -753 236 319 34 17 chrY 24932706 24932825 -26580759 - L2 LINE L2 -507 2807 2687 250 281 126 7 chrY 24933869 24934004 -26579580 - TAR1 Satellite telomeric -200 1911 1761 4474 159 16 11 chrY 24934238 24935060 -26578524 - L1PA14 LINE L1 0 6161 5336 555 51 64 0 chrY 24935059 24935137 -26578447 + L1P LINE L1 5343 5425 -729 * 16489 142 14 4 chrY 24935141 24938618 -26574966 - L1PA7 LINE L1 -74 6395 2883 4467 183 46 7 chrY 24938607 24939288 -26574296 - L1PA7 LINE L1 -5338 1123 403 * 207 0 0 0 chrY 24939288 24939311 -26574273 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4467 183 46 7 chrY 24939311 24939451 -26574133 - L1PA7 LINE L1 -6058 403 270 1201 184 0 0 chrY 24939459 24939660 -26573924 - L1PA7 LINE L1 -6256 205 5 626 254 97 24 chrY 24939709 24940231 -26573353 + L1MC1 LINE L1 5017 5562 -748 267 288 12 25 chrY 24940660 24940740 -26572844 - LTR33 LTR ERVL -368 153 75 947 185 0 97 chrY 24940849 24941087 -26572497 + AluSc SINE Alu 1 215 -94 1282 234 0 20 chrY 24941574 24941702 -26571882 + AluSx SINE Alu 1 130 -182 1447 204 10 16 chrY 24941702 24942016 -26571568 + AluSx SINE Alu 1 312 0 1282 234 0 20 chrY 24942016 24942190 -26571394 + AluSx SINE Alu 130 297 -15 287 286 135 15 chrY 24942513 24942646 -26570938 - MIR SINE MIR -60 202 54 28 0 0 0 chrY 24943604 24943632 -26569952 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrY 24943833 24943855 -26569729 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chrY 24943879 24943919 -26569665 + AT_rich Low_complexity Low_complexity 1 40 0 1950 158 3 0 chrY 24946419 24946716 -26566868 + AluSq SINE Alu 1 298 -15 603 256 0 0 chrY 24946836 24946957 -26566627 + FLAM_A SINE Alu 1 121 -12 280 331 130 27 chrY 24947572 24947756 -26565828 + L3 LINE CR1 195 397 -1180 1324 180 71 4 chrY 24948267 24948522 -26565062 + AluSg1 SINE Alu 30 301 -8 1602 203 7 0 chrY 24948651 24948942 -26564642 + AluSq SINE Alu 1 293 -20 1130 254 42 7 chrY 24949088 24949376 -26564208 - AluJb SINE Alu -4 298 1 500 321 85 59 chrY 24949588 24949893 -26563691 - L2 LINE L2 -19 3253 2941 249 211 96 64 chrY 24951989 24952145 -26561439 + L1MC4 LINE L1 7865 8025 -17 665 201 0 22 chrY 24952190 24952324 -26561260 - FLAM_C SINE Alu 0 133 3 244 272 134 45 chrY 24952785 24952987 -26560597 + L1MC1 LINE L1 5552 5771 -2037 1851 59 0 0 chrY 24953179 24953416 -26560168 - L1PA3 LINE L1 -2444 3702 3466 13694 44 13 9 chrY 24953416 24955857 -26557727 + L1PA3 LINE L1 3709 6152 -3 511 181 213 31 chrY 24956020 24956180 -26557404 - L1MC3 LINE L1 -1504 6281 6093 842 220 211 14 chrY 24956189 24956544 -26557040 - L1M4 LINE L1 -947 5199 4775 2592 153 18 40 chrY 24957114 24957610 -26555974 + LTR22B LTR ERVK 5 489 -3 559 197 20 0 chrY 24957656 24957803 -26555781 + CT-rich Low_complexity Low_complexity 3 152 0 294 214 0 0 chrY 24957804 24957860 -26555724 + T-rich Low_complexity Low_complexity 1 56 0 1332 236 0 31 chrY 24957862 24958184 -26555400 - AluSx SINE Alu 0 312 1 615 250 152 0 chrY 24958276 24958440 -26555144 - MER3 DNA MER1_type -4 205 17 880 286 25 7 chrY 24960186 24960469 -26553115 + AluSx SINE Alu 1 288 -14 1596 196 17 7 chrY 24960571 24960862 -26552722 + AluSx SINE Alu 1 294 -18 1154 220 0 0 chrY 24960949 24961172 -26552412 + L1MC1 LINE L1 6104 6326 -7 203 244 0 0 chrY 24961175 24961216 -26552368 + (CA)n Simple_repeat Simple_repeat 2 42 0 1163 102 6 0 chrY 24961992 24962169 -26551415 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 371 184 11 0 chrY 24962170 24962257 -26551327 + GA-rich Low_complexity Low_complexity 2 89 0 208 281 0 31 chrY 24964078 24964142 -26549442 - L2 LINE L2 -1 3312 3251 809 205 126 82 chrY 24964439 24964732 -26548852 - AluJb SINE Alu -3 309 4 1124 246 111 24 chrY 24966813 24967235 -26546349 - MLT1C LTR MaLR -7 460 2 284 111 19 0 chrY 24967652 24967706 -26545878 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chrY 24968622 24968644 -26544940 + AT_rich Low_complexity Low_complexity 1 22 0 1330 195 66 0 chrY 24969112 24969368 -26544216 - AluSx SINE Alu -28 284 12 195 69 0 0 chrY 24969785 24969814 -26543770 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6724 63 15 10 chrY 24969821 24972552 -26541032 - L1PA4 LINE L1 -11 6144 3278 302 182 0 18 chrY 24972740 24972795 -26540789 + Alu SINE Alu 1 54 -254 18511 21 0 0 chrY 24976338 24979301 -26534283 + L1HS LINE L1 3193 6155 0 266 0 29 0 chrY 24979301 24979335 -26534249 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 226 135 0 0 chrY 24979337 24979374 -26534210 + (A)n Simple_repeat Simple_repeat 1 37 0 1630 181 0 0 chrY 24980142 24980402 -26533182 + AluSg SINE Alu 19 278 -32 420 82 0 0 chrY 24980402 24980463 -26533121 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 7009 163 47 28 chrY 24980464 24981841 -26531743 - L1P3 LINE L1 -4644 1807 377 552 166 103 7 chrY 24981861 24982006 -26531578 - LTR19B-int LTR ERV1 -2260 4736 4578 1491 214 7 4 chrY 24982141 24982422 -26531162 - LTR19B-int LTR ERV1 -4975 611 330 808 101 14 0 chrY 24982423 24982561 -26531023 + (GA)n Simple_repeat Simple_repeat 2 141 0 1428 180 65 0 chrY 24982566 24982811 -26530773 - LTR19B-int LTR ERV1 -5325 261 1 1753 171 49 3 chrY 24982811 24983139 -26530445 - LTR19B LTR ERV1 0 580 238 647 200 0 0 chrY 24983132 24983247 -26530337 - LTR19B LTR ERV1 -465 115 1 * 22 0 0 0 chrY 24984046 24984068 -26529516 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chrY 24984127 24984162 -26529422 + (TA)n Simple_repeat Simple_repeat 1 35 0 1413 165 120 0 chrY 24984298 24984565 -26529019 - AluSc SINE Alu -9 300 2 236 333 9 37 chrY 24984585 24984693 -26528891 + MER5B DNA MER1_type 44 148 -30 22 56 0 0 chrY 24985004 24985040 -26528544 + AT_rich Low_complexity Low_complexity 1 36 0 29 60 0 0 chrY 24985316 24985366 -26528218 + AT_rich Low_complexity Low_complexity 1 50 0 318 293 64 71 chrY 24985498 24985795 -26527789 - MER46C DNA MER2_type -17 321 27 479 43 43 0 chrY 24986204 24986274 -26527310 + L1PA2 LINE L1 6082 6154 -1 183 42 0 0 chrY 24986730 24986754 -26526830 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1176 183 5 0 chrY 24986756 24986953 -26526631 - AluSg/x SINE Alu -35 274 77 21 0 0 0 chrY 24986954 24986975 -26526609 + AT_rich Low_complexity Low_complexity 1 21 0 239 236 167 0 chrY 24987747 24987819 -26525765 - L2 LINE L2 -10 3303 3220 550 255 0 45 chrY 24988524 24988681 -26524903 + FRAM SINE Alu 9 158 -18 232 301 65 65 chrY 24988778 24988931 -26524653 + MIR SINE MIR 39 191 -17 782 190 44 6 chrY 24989403 24989561 -26524023 + U1 snRNA snRNA 1 164 -1 230 0 0 32 chrY 24989561 24989592 -26523992 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chrY 24989868 24989892 -26523692 + AT_rich Low_complexity Low_complexity 1 24 0 9314 57 6 0 chrY 24990397 24992374 -26521210 + L1PA4 LINE L1 4155 6149 -6 2631 26 0 0 chrY 24992454 24992761 -26520823 - AluYa5 SINE Alu -4 307 1 1657 167 26 3 chrY 24993077 24993536 -26520048 - AluSq SINE Alu 0 466 1 30 0 0 0 chrY 24994137 24994167 -26519417 + AT_rich Low_complexity Low_complexity 1 30 0 872 306 92 68 chrY 24994172 24995273 -26518311 - MER21-int LTR ERV1 -1011 3180 2054 1010 266 35 37 chrY 24995550 24995983 -26517601 - L1MA4 LINE L1 -4 6296 5865 270 0 0 0 chrY 24997431 24997461 -26516123 + (TAA)n Simple_repeat Simple_repeat 1 30 0 212 224 20 0 chrY 24997992 24998041 -26515543 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chrY 24999089 24999113 -26514471 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chrY 24999784 24999833 -26513751 + AT_rich Low_complexity Low_complexity 1 49 0 1206 238 90 4 chrY 24999954 25000231 -26513353 + AluSx SINE Alu 1 301 -1 3287 216 34 16 chrY 25000407 25001163 -26512421 - L1PA10 LINE L1 -11 6157 5388 1023 163 12 0 chrY 25001381 25001553 -26512031 - AluSq SINE Alu -11 302 129 711 280 160 7 chrY 25001581 25001881 -26511703 + L1MB7 LINE L1 5376 5721 -457 311 261 123 22 chrY 25002104 25002242 -26511342 - LTR40b LTR ERVL -252 210 59 914 241 14 38 chrY 25002242 25002532 -26511052 + L1MB7 LINE L1 5891 6173 -11 1104 192 21 79 chrY 25003109 25003400 -26510184 + AluSx SINE Alu 2 275 -37 408 40 0 0 chrY 25003424 25003474 -26510110 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 675 329 92 19 chrY 25003650 25003923 -26509661 - L2 LINE L2 -663 2651 2399 6812 113 8 23 chrY 25003923 25005010 -26508574 + MER11C LTR ERVK 1 1071 0 675 329 92 19 chrY 25005010 25005213 -26508371 - L2 LINE L2 -915 2399 2140 1114 219 60 4 chrY 25005242 25005511 -26508073 + AluJo SINE Alu 1 284 -18 237 305 37 0 chrY 25005551 25005633 -26507951 - L2 LINE L2 -1386 1928 1844 201 39 0 0 chrY 25006914 25006940 -26506644 + (CA)n Simple_repeat Simple_repeat 1 26 0 1483 161 8 0 chrY 25008605 25008847 -26504737 - AluSg SINE Alu -27 283 40 25 95 0 0 chrY 25008888 25008962 -26504622 + AT_rich Low_complexity Low_complexity 1 74 0 1303 196 4 0 chrY 25008962 25009187 -26504397 + AluSx SINE Alu 1 226 -86 291 85 0 0 chrY 25009224 25009271 -26504313 + (CA)n Simple_repeat Simple_repeat 2 48 0 678 239 73 30 chrY 25009292 25009661 -26503923 - L1 LINE L1 -761 6804 6420 505 264 35 21 chrY 25009698 25009842 -26503742 - FRAM SINE Alu -37 139 1 4589 215 71 48 chrY 25009842 25011352 -26502232 - L1 LINE L1 -1145 6420 4876 1356 256 123 14 chrY 25011419 25011997 -26501587 - L1 LINE L1 -3031 4534 3894 867 309 84 32 chrY 25012034 25012247 -26501337 - L1 LINE L1 -4812 2753 2553 1281 217 3 62 chrY 25012247 25012556 -26501028 - AluSq SINE Alu -22 291 1 867 309 84 32 chrY 25012556 25013090 -26500494 - L1 LINE L1 -5012 2553 1967 314 138 17 0 chrY 25014750 25014808 -26498776 + (TA)n Simple_repeat Simple_repeat 1 59 0 21 57 0 0 chrY 25015144 25015179 -26498405 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chrY 25016562 25016591 -26496993 + AT_rich Low_complexity Low_complexity 1 29 0 1171 246 90 4 chrY 25016712 25016989 -26496595 + AluSx SINE Alu 1 301 -1 663 239 165 0 chrY 25017158 25017334 -26496250 - AluJb SINE Alu -107 205 1 935 188 6 6 chrY 25019803 25019984 -26493600 - L1M2 LINE L1 -732 5559 5379 593 255 33 0 chrY 25019991 25020144 -26493440 + AluSg/x SINE Alu 126 283 -27 1009 184 10 54 chrY 25020175 25020469 -26493115 - L1M2 LINE L1 -769 5377 5097 1578 219 11 19 chrY 25020493 25020868 -26492716 + L1MA7 LINE L1 5595 5966 -325 509 267 82 0 chrY 25020869 25021004 -26492580 + FRAM SINE Alu 1 146 -30 1051 164 64 95 chrY 25021010 25021194 -26492390 + L1MA7 LINE L1 5944 6114 -177 1510 215 11 0 chrY 25021194 25021478 -26492106 + AluSq SINE Alu 4 290 -23 1051 164 64 95 chrY 25021478 25021651 -26491933 + L1MA7 LINE L1 6114 6291 0 1468 174 106 0 chrY 25022123 25022405 -26491179 - AluSx SINE Alu 0 312 1 188 357 14 14 chrY 25022597 25022737 -26490847 + L2 LINE L2 1910 2049 -1265 209 160 0 40 chrY 25022818 25022868 -26490716 + CT-rich Low_complexity Low_complexity 5 52 0 588 241 36 0 chrY 25022873 25023010 -26490574 - FRAM SINE Alu -13 163 22 48 67 0 0 chrY 25023849 25023939 -26489645 + AT_rich Low_complexity Low_complexity 1 90 0 7643 23 0 0 chrY 25024398 25025853 -26487731 - L1PA2 LINE L1 -2 6153 4697 6939 30 1 1 chrY 25025856 25026689 -26486895 + L1P LINE L1 3680 4512 -1634 1871 167 0 0 chrY 25026843 25027130 -26486454 + AluSx SINE Alu 3 289 -23 244 298 88 44 chrY 25027691 25027919 -26485665 + L1M4 LINE L1 331 568 -5974 351 267 57 9 chrY 25027992 25028097 -26485487 - AluJb SINE Alu -20 282 173 659 279 45 25 chrY 25028109 25028310 -26485274 - AluJo SINE Alu -103 209 5 213 146 24 0 chrY 25028457 25028498 -26485086 + T-rich Low_complexity Low_complexity 4 45 0 1227 277 77 28 chrY 25028529 25029644 -26483940 + L1M4 LINE L1 858 2080 -4566 1895 75 6 3 chrY 25029654 25032301 -26481283 + L1PA4 LINE L1 1 2787 -3359 6950 59 2 1 chrY 25032326 25033572 -26480012 + L1PA4 LINE L1 4891 6147 -8 850 255 127 4 chrY 25033683 25033950 -26479634 + AluJo SINE Alu 8 307 -5 260 308 64 16 chrY 25034060 25034372 -26479212 + L1M4 LINE L1 2367 2693 -3953 312 263 75 0 chrY 25034464 25034544 -26479040 + L1M4 LINE L1 2914 2999 -3645 257 298 59 29 chrY 25034605 25034877 -26478707 + L1M4 LINE L1 3354 3633 -3011 * 3452 251 50 49 chrY 25034860 25036017 -26477567 + L1MB1 LINE L1 1253 2420 -4443 1603 217 0 3 chrY 25036017 25036330 -26477254 + AluSx SINE Alu 1 312 0 3452 251 50 49 chrY 25036330 25036710 -26476874 + L1MB1 LINE L1 2420 2798 -4065 1329 255 132 24 chrY 25037021 25038009 -26475575 + L1MB1 LINE L1 3507 4612 -2953 4181 249 130 16 chrY 25038041 25040238 -26473346 + L1MB1 LINE L1 4876 7339 -269 839 260 34 0 chrY 25040252 25040456 -26473128 - MSTB1 LTR MaLR -221 211 1 256 280 19 19 chrY 25040456 25040563 -26473021 + L1MA9 LINE L1 6168 6274 -38 222 37 0 0 chrY 25040570 25040597 -26472987 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 31139 137 20 13 chrY 25040597 25046688 -26466896 - L1PA6 LINE L1 -16 6138 11 1891 153 3 0 chrY 25046730 25047018 -26466566 - AluY SINE Alu -22 289 1 3957 132 0 0 chrY 25047357 25047942 -26465642 - LTR14C LTR ERVK 0 587 3 264 332 158 5 chrY 25048774 25048964 -26464620 + MIR SINE MIR 44 262 0 3373 112 198 72 chrY 25049307 25050041 -26463543 + LTR12 LTR ERV1 1 826 0 270 274 42 0 chrY 25051412 25051507 -26462077 - L1M4 LINE L1 -981 5165 5067 * 620 204 61 50 chrY 25051503 25051684 -26461900 + L1MB3 LINE L1 5371 5553 -631 514 202 0 0 chrY 25051684 25051788 -26461796 + L1MB3 LINE L1 6068 6171 -12 1829 165 0 3 chrY 25051875 25052178 -26461406 - AluY SINE Alu -9 302 1 368 227 65 40 chrY 25052305 25052458 -26461126 - L1MC3 LINE L1 -174 6000 5860 2435 117 63 36 chrY 25052623 25053069 -26460515 - LTR22B LTR ERVK -34 458 1 6030 200 36 2 chrY 25053442 25055074 -26458510 + L1PA8 LINE L1 6 1727 -4734 2948 168 8 2 chrY 25055083 25055590 -26457994 + LTR5 LTR ERVK 1 510 -459 1087 122 16 43 chrY 25055620 25055808 -26457776 + LTR5 LTR ERVK 787 969 0 15226 160 21 28 chrY 25055808 25057457 -26456127 + L1PA8 LINE L1 1723 3381 -3106 1244 248 0 44 chrY 25057457 25057772 -26455812 + AluSx SINE Alu 1 301 -1 15226 160 21 28 chrY 25057772 25060311 -26453273 + L1PA8 LINE L1 3381 6143 -344 1219 249 6 21 chrY 25060308 25060634 -26452950 - L1P4 LINE L1 -460 5708 5388 * 411 293 18 24 chrY 25060805 25060969 -26452615 + MER20 DNA MER1_type 57 219 0 3730 275 11 12 chrY 25061251 25062173 -26451411 - MER52A LTR ERV1 -2 1753 895 778 287 98 16 chrY 25062173 25062539 -26451045 - MER52A LTR ERV1 -658 1097 706 1813 199 24 8 chrY 25062576 25062958 -26450626 + MLT2A1 LTR ERVL 1 388 -56 15781 184 28 5 chrY 25062993 25063890 -26449694 + HERVL-A1 LTR ERVL 1 876 -4778 324 48 0 0 chrY 25063890 25063932 -26449652 + (CA)n Simple_repeat Simple_repeat 1 42 0 15781 184 28 5 chrY 25063932 25066104 -26447480 + HERVL-A1 LTR ERVL 876 3141 -2513 1514 152 19 0 chrY 25066112 25066422 -26447162 + HERVL-A1 LTR ERVL 5339 5654 0 1450 185 61 15 chrY 25066423 25066752 -26446832 + MLT2A1 LTR ERVL 3 346 -98 270 237 0 0 chrY 25066766 25066842 -26446742 + (TA)n Simple_repeat Simple_repeat 1 76 0 236 235 0 0 chrY 25068633 25068684 -26444900 - MER20 DNA MER1_type -73 146 96 227 348 56 69 chrY 25068694 25068927 -26444657 + L2 LINE L2 2733 2962 -352 26 30 0 0 chrY 25068932 25068965 -26444619 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chrY 25069049 25069092 -26444492 + AT_rich Low_complexity Low_complexity 1 43 0 392 323 117 15 chrY 25070269 25070944 -26442640 + L1M4c LINE L1 981 1724 -4660 1773 272 116 63 chrY 25071450 25071960 -26441624 + L1M4c LINE L1 23 505 -5879 195 69 0 0 chrY 25071960 25071989 -26441595 + (CA)n Simple_repeat Simple_repeat 2 30 0 1773 272 116 63 chrY 25071989 25072000 -26441584 + L1M4c LINE L1 505 514 -5870 238 60 20 0 chrY 25072000 25072050 -26441534 + LTR66 LTR ERVL 389 439 -171 1773 272 116 63 chrY 25072050 25073141 -26440443 + L1M4c LINE L1 514 1773 -4611 708 244 26 26 chrY 25073208 25073437 -26440147 + L1M4c LINE L1 1952 2180 -4204 520 259 15 0 chrY 25074662 25074793 -26438791 - MER21B LTR ERV1 -484 379 247 477 309 12 35 chrY 25074870 25075175 -26438409 - MER52A LTR ERV1 -1372 383 1 373 306 143 0 chrY 25075175 25075370 -26438214 - MER21B LTR ERV1 -622 241 19 1126 285 60 18 chrY 25075858 25076332 -26437252 + LTR25 LTR ERV1 249 725 -69 274 212 76 0 chrY 25076318 25076384 -26437200 + LTR25 LTR ERV1 471 541 -253 * 1069 269 58 3 chrY 25076373 25076733 -26436851 + LTR25 LTR ERV1 415 794 0 727 204 71 104 chrY 25076876 25077366 -26436218 + L1M4c LINE L1 1214 1687 -4697 21 0 0 0 chrY 25077405 25077426 -26436158 + AT_rich Low_complexity Low_complexity 1 21 0 5468 160 29 32 chrY 25077433 25077999 -26435585 - MER11C LTR ERVK 0 1071 508 309 26 0 0 chrY 25077999 25078037 -26435547 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5468 160 29 32 chrY 25078037 25078544 -26435040 - MER11C LTR ERVK -563 508 1 611 242 39 0 chrY 25078551 25078729 -26434855 + L1M4c LINE L1 2012 2196 -4188 1823 111 0 12 chrY 25080637 25080889 -26432695 + AluY SINE Alu 1 249 -62 21 71 0 0 chrY 25081447 25081489 -26432095 + AT_rich Low_complexity Low_complexity 1 42 0 565 285 7 0 chrY 25081854 25081998 -26431586 - MER21B LTR ERV1 -487 376 232 * 1426 335 8 0 chrY 25081997 25082465 -26431119 - MER52A LTR ERV1 -5 1750 1279 1438 349 23 16 chrY 25082479 25083206 -26430378 - HUERS-P3 LTR ERV1 -6489 2430 1699 516 269 107 29 chrY 25083402 25083746 -26429838 + LTR25 LTR ERV1 248 555 -239 435 213 107 0 chrY 25083831 25083953 -26429631 + MER61E LTR ERV1 431 565 -4 1650 176 14 10 chrY 25084015 25084305 -26429279 + AluY SINE Alu 5 295 -16 5219 291 37 35 chrY 25084315 25086658 -26426926 + MER61E-int LTR ERV1 45 2391 -4605 318 242 0 66 chrY 25086760 25086851 -26426733 - L1MC4 LINE L1 -1344 6698 6614 305 168 10 129 chrY 25086836 25086937 -26426647 - L1MC4 LINE L1 -1340 6702 6614 * 531 241 0 9 chrY 25086946 25087288 -26426296 + (TA)n Simple_repeat Simple_repeat 1 338 0 297 0 0 0 chrY 25087288 25087321 -26426263 + (GA)n Simple_repeat Simple_repeat 2 34 0 671 322 8 0 chrY 25087329 25087565 -26426019 + MER61E-int LTR ERV1 2454 2691 -6228 2220 252 33 76 chrY 25087583 25088411 -26425173 - LTR25 LTR ERV1 0 794 3 4778 246 71 54 chrY 25088413 25089340 -26424244 - LTR25-int LTR ERV1 0 6996 6086 207 0 0 0 chrY 25089340 25089363 -26424221 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4778 246 71 54 chrY 25089363 25091368 -26422216 - LTR25-int LTR ERV1 -910 6086 4117 1626 164 13 63 chrY 25091368 25091686 -26421898 + AluSc SINE Alu 1 302 -7 4778 246 71 54 chrY 25091686 25092764 -26420820 - LTR25-int LTR ERV1 -2879 4117 1041 204 40 0 0 chrY 25092773 25092798 -26420786 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 713 284 94 51 chrY 25092879 25093252 -26420332 - LTR25 LTR ERV1 0 794 406 1867 212 28 26 chrY 25093294 25093757 -26419827 - LTR25 LTR ERV1 -330 464 1 3411 284 45 36 chrY 25093763 25093821 -26419763 - HUERS-P3 LTR ERV1 -4217 2779 2723 186 71 0 0 chrY 25093821 25093849 -26419735 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3411 284 45 36 chrY 25093849 25096721 -26416863 - HUERS-P3 LTR ERV1 -4273 2723 228 1904 267 142 14 chrY 25096815 25097519 -26416065 - LTR25 LTR ERV1 0 794 1 2739 293 14 21 chrY 25097519 25098452 -26415132 + MER61-int LTR ERV1 2689 3614 -5305 1890 277 18 20 chrY 25098457 25099385 -26414199 + MER61-int LTR ERV1 3328 6973 -23 363 153 14 14 chrY 25099511 25099583 -26414001 + LTR25 LTR ERV1 222 293 -501 588 269 67 82 chrY 25099625 25100149 -26413435 + LTR25 LTR ERV1 269 784 -10 2755 332 39 22 chrY 25100184 25101516 -26412068 - HUERS-P3 LTR ERV1 -5866 3053 1699 239 250 14 0 chrY 25101609 25101681 -26411903 + LTR25 LTR ERV1 219 291 -503 438 274 46 100 chrY 25101709 25101950 -26411634 + LTR25 LTR ERV1 247 474 -320 270 0 0 0 chrY 25102103 25102133 -26411451 + (TTA)n Simple_repeat Simple_repeat 2 31 0 338 194 0 0 chrY 25102342 25102414 -26411170 - LTR25 LTR ERV1 -503 291 220 394 218 0 11 chrY 25102507 25102594 -26410990 + HUERS-P3 LTR ERV1 1699 1784 -7135 3451 140 12 11 chrY 25102596 25103159 -26410425 - LTR6A LTR ERV1 0 564 1 37084 201 34 32 chrY 25103159 25104971 -26408613 - HERVS71 LTR ERV1 -69 8909 7101 219 36 0 0 chrY 25104971 25104999 -26408585 + (TAA)n Simple_repeat Simple_repeat 1 28 0 37084 201 34 32 chrY 25104999 25111754 -26401830 - HERVS71 LTR ERV1 -1877 7101 330 1727 281 13 45 chrY 25111770 25112460 -26401124 + HUERS-P3 LTR ERV1 1749 2416 -4580 10716 222 14 23 chrY 25112686 25116947 -26396637 + HERVK3 LTR ERVK 2912 7237 -6 1621 184 76 45 chrY 25116953 25117372 -26396212 + LTR3b LTR ERVK 1 432 -5 801 215 9 68 chrY 25117378 25117597 -26395987 + AluSg/x SINE Alu 105 310 0 240 233 241 0 chrY 25117683 25117799 -26395785 + L1MC3 LINE L1 5254 5397 -947 1453 199 13 10 chrY 25118137 25118448 -26395136 + AluSx SINE Alu 1 312 0 1229 266 57 33 chrY 25119221 25119822 -26393762 + L1MC3 LINE L1 5374 5988 -1797 542 130 60 0 chrY 25120057 25120157 -26393427 - L1MB3 LINE L1 -10 6173 6068 498 234 65 27 chrY 25120157 25120341 -26393243 - L1M4 LINE L1 -631 5553 5363 392 258 60 6 chrY 25120325 25120492 -26393092 + L1M4 LINE L1 5067 5242 -904 * 978 218 23 5 chrY 25120505 25120725 -26392859 + MER50 LTR ERV1 511 734 0 2071 241 67 22 chrY 25120895 25121612 -26391972 - L1MB5 LINE L1 -10 6164 5416 327 311 0 28 chrY 25122721 25122901 -26390683 + (CCCTAA)n Simple_repeat Simple_repeat 1 175 0 722 140 0 59 chrY 25224666 25224802 -26288782 + FLAM_C SINE Alu 5 132 -1 2280 129 19 19 chrY 25224807 25225171 -26288413 + THE1B LTR MaLR 1 364 0 453 270 176 36 chrY 25225261 25225483 -26288101 - MIR SINE MIR -9 253 1 562 100 210 30 chrY 25226257 25226357 -26287227 + FLAM_C SINE Alu 3 120 -23 441 158 0 0 chrY 25226365 25226447 -26287137 + GA-rich Low_complexity Low_complexity 3 84 0 274 252 92 34 chrY 25226462 25226581 -26287003 + L2 LINE L2 3147 3272 0 1119 136 65 5 chrY 25226994 25227178 -26286406 + MER3 DNA MER1_type 14 208 -1 501 248 45 13 chrY 25228035 25228192 -26285392 - MIR SINE MIR -79 183 22 3423 111 22 4 chrY 25228646 25229140 -26284444 - MER11B LTR ERVK -733 503 1 1604 253 102 22 chrY 25229140 25229295 -26284289 + L1P LINE L1 1864 2005 -4141 277 23 0 45 chrY 25229295 25229339 -26284245 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1604 253 102 22 chrY 25229339 25229783 -26283801 + L1P LINE L1 2005 2511 -3635 601 189 0 0 chrY 25231152 25231258 -26282326 + AluSq/x SINE Alu 2 107 -205 236 175 25 62 chrY 25231407 25231487 -26282097 + A-rich Low_complexity Low_complexity 3 79 0 454 309 39 25 chrY 25231553 25231838 -26281746 + L1M4c LINE L1 1370 1658 -4726 838 282 93 44 chrY 25231863 25232498 -26281086 + L1M4c LINE L1 2445 3110 -3272 702 175 54 60 chrY 25232499 25232665 -26280919 - AluSg/x SINE Alu -10 302 138 306 324 53 10 chrY 25232694 25232993 -26280591 + L1 LINE L1 4521 4832 -1314 542 269 18 29 chrY 25233002 25233324 -26280260 + BSR/Beta Satellite Satellite 1 318 -3 1211 284 12 19 chrY 25233357 25235285 -26278299 + BSR/Beta Satellite Satellite 1 1914 -13 1050 282 7 22 chrY 25235388 25236025 -26277559 + BSR/Beta Satellite Satellite 1 627 0 501 276 28 34 chrY 25236112 25236901 -26276683 + BSR/Beta Satellite Satellite 1 784 -23 233 237 68 0 chrY 25236922 25236981 -26276603 + BSR/Beta Satellite Satellite 75 137 -15 307 292 19 14 chrY 25237074 25237199 -26276385 + BSR/Beta Satellite Satellite 1 125 -51 942 253 67 20 chrY 25237291 25238058 -26275526 + BSR/Beta Satellite Satellite 1 802 -44 1121 294 10 3 chrY 25238128 25238732 -26274852 + BSR/Beta Satellite Satellite 1 608 -122 291 319 11 0 chrY 25238842 25238936 -26274648 + BSR/Beta Satellite Satellite 1 95 -47 548 285 24 13 chrY 25239077 25240197 -26273387 + BSR/Beta Satellite Satellite 1 1132 0 771 336 13 10 chrY 25240285 25240583 -26273001 + BSR/Beta Satellite Satellite 21 319 -60 579 243 21 43 chrY 25240630 25240845 -26272739 + BSR/Beta Satellite Satellite 1 210 0 326 373 0 0 chrY 25240921 25241039 -26272545 + BSR/Beta Satellite Satellite 4 121 -21 597 271 26 21 chrY 25241184 25241900 -26271684 + BSR/Beta Satellite Satellite 1 719 -68 275 334 27 15 chrY 25241966 25242108 -26271476 + BSR/Beta Satellite Satellite 2 264 -6 235 143 0 24 chrY 25242135 25242177 -26271407 + BSR/Beta Satellite Satellite 321 361 -18 1157 267 44 19 chrY 25242195 25243790 -26269794 + BSR/Beta Satellite Satellite 1 1634 -46 533 270 14 21 chrY 25243856 25244950 -26268634 + BSR/Beta Satellite Satellite 1 1086 -46 1106 309 25 18 chrY 25245015 25245774 -26267810 + BSR/Beta Satellite Satellite 1 764 -23 1074 261 16 34 chrY 25245846 25247734 -26265850 + BSR/Beta Satellite Satellite 1 1854 -6 1325 294 5 7 chrY 25247832 25248169 -26265415 + BSR/Beta Satellite Satellite 1 336 -6 594 247 4 38 chrY 25248245 25248505 -26265079 + BSR/Beta Satellite Satellite 1 251 -32 243 330 11 0 chrY 25248574 25248662 -26264922 + BSR/Beta Satellite Satellite 43 131 -11 627 261 11 30 chrY 25248728 25249338 -26264246 + BSR/Beta Satellite Satellite 1 598 -27 357 341 18 11 chrY 25249508 25249726 -26263858 + BSR/Beta Satellite Satellite 1 219 -7 1457 255 24 23 chrY 25249746 25250565 -26263019 + BSR/Beta Satellite Satellite 1 819 -43 1281 303 20 7 chrY 25250646 25251445 -26262139 + BSR/Beta Satellite Satellite 1 810 -35 189 178 0 0 chrY 25251449 25251494 -26262090 + A-rich Low_complexity Low_complexity 4 48 0 543 270 20 25 chrY 25251519 25252360 -26261224 + BSR/Beta Satellite Satellite 1 836 -42 1296 277 25 12 chrY 25252431 25254339 -26259245 + BSR/Beta Satellite Satellite 1 1932 -6 1399 257 0 0 chrY 25254446 25254742 -26258842 + BSR/Beta Satellite Satellite 35 330 -49 538 292 12 21 chrY 25254805 25255129 -26258455 + BSR/Beta Satellite Satellite 1 321 -10 561 271 13 40 chrY 25255287 25256048 -26257536 + BSR/Beta Satellite Satellite 1 740 -6 1349 290 16 20 chrY 25256102 25256806 -26256778 + BSR/Beta Satellite Satellite 1 701 0 738 265 24 27 chrY 25256850 25257775 -26255809 + BSR/Beta Satellite Satellite 1 922 -178 524 277 15 34 chrY 25257790 25258079 -26255505 + BSR/Beta Satellite Satellite 1 283 -43 553 266 25 33 chrY 25258396 25259094 -26254490 + BSR/Beta Satellite Satellite 1 692 -7 278 380 0 0 chrY 25259203 25259360 -26254224 + BSR/Beta Satellite Satellite 1 157 -1 1333 285 31 3 chrY 25259413 25259827 -26253757 + BSR/Beta Satellite Satellite 1 425 -12 541 264 15 8 chrY 25259952 25260277 -26253307 + BSR/Beta Satellite Satellite 1 327 -34 1238 261 26 41 chrY 25260347 25261970 -26251614 + BSR/Beta Satellite Satellite 1 1599 -27 301 304 11 11 chrY 25261984 25262076 -26251508 + BSR/Beta Satellite Satellite 5 96 -46 1086 273 9 19 chrY 25262091 25262413 -26251171 + BSR/Beta Satellite Satellite 45 363 -16 1023 304 3 3 chrY 25262429 25262889 -26250695 + BSR/Beta Satellite Satellite 1 460 -47 648 242 16 18 chrY 25262950 25263542 -26250042 + BSR/Beta Satellite Satellite 1 591 -44 2317 106 0 3 chrY 25263547 25263859 -26249725 - AluY SINE Alu 0 311 1 594 257 36 28 chrY 25263882 25264336 -26249248 + BSR/Beta Satellite Satellite 1 457 -6 1290 312 10 12 chrY 25264433 25264837 -26248747 + BSR/Beta Satellite Satellite 1 402 -10 469 307 9 35 chrY 25264848 25265268 -26248316 + BSR/Beta Satellite Satellite 1 409 -11 655 250 9 42 chrY 25265335 25265837 -26247747 + BSR/Beta Satellite Satellite 1 485 -4 258 295 49 16 chrY 25265912 25266034 -26247550 + BSR/Beta Satellite Satellite 1 126 -16 338 277 24 49 chrY 25266131 25266227 -26247357 + BSR/Beta Satellite Satellite 1 98 -431 1877 122 47 4 chrY 25266227 25266530 -26247054 + AluSq SINE Alu 1 313 0 338 277 24 49 chrY 25266530 25266644 -26246940 + BSR/Beta Satellite Satellite 98 500 -29 1106 290 18 16 chrY 25266669 25267488 -26246096 + BSR/Beta Satellite Satellite 1 820 -44 1141 307 6 3 chrY 25267556 25268220 -26245364 + BSR/Beta Satellite Satellite 1 666 -64 633 265 14 23 chrY 25268280 25269281 -26244303 + BSR/Beta Satellite Satellite 1 992 -43 1303 304 15 18 chrY 25269413 25270117 -26243467 + BSR/Beta Satellite Satellite 1 701 0 609 261 10 24 chrY 25270305 25270940 -26242644 + BSR/Beta Satellite Satellite 1 626 -9 314 325 47 25 chrY 25271059 25271312 -26242272 + BSR/Beta Satellite Satellite 1 258 -4 260 222 0 19 chrY 25271330 25271384 -26242200 + BSR/Beta Satellite Satellite 1 53 -326 2269 208 27 29 chrY 25271402 25271921 -26241663 - LTR22 LTR ERVK -62 518 1 468 281 12 7 chrY 25271921 25272103 -26241481 + BSR/Beta Satellite Satellite 1 182 0 1268 287 15 11 chrY 25272149 25273356 -26240228 + BSR/Beta Satellite Satellite 1 1211 -53 620 226 16 20 chrY 25273418 25273652 -26239932 + BSR/Beta Satellite Satellite 1 232 -51 618 245 20 11 chrY 25273698 25274367 -26239217 + BSR/Beta Satellite Satellite 1 675 -6 1419 269 15 26 chrY 25274470 25275964 -26237620 + BSR/Beta Satellite Satellite 1 1477 -37 235 281 0 0 chrY 25276001 25276065 -26237519 + BSR/Beta Satellite Satellite 15 78 -64 386 292 32 8 chrY 25276113 25276265 -26237319 + BSR/Beta Satellite Satellite 1 155 -15 1009 289 17 2 chrY 25276412 25276782 -26236802 + BSR/Beta Satellite Satellite 1 375 0 678 270 5 27 chrY 25276841 25277192 -26236392 + BSR/Beta Satellite Satellite 1 343 -30 970 311 23 12 chrY 25277263 25277922 -26235662 + BSR/Beta Satellite Satellite 1 666 -49 382 263 6 6 chrY 25277934 25278066 -26235518 + BSR/Beta Satellite Satellite 1 132 -35 652 258 10 26 chrY 25278115 25279195 -26234389 + BSR/Beta Satellite Satellite 1 1062 -6 740 272 10 96 chrY 25279317 25279502 -26234082 + BSR/Beta Satellite Satellite 46 196 -183 1760 155 0 4 chrY 25279502 25279809 -26233775 - AluSc SINE Alu 0 308 3 740 272 10 96 chrY 25279809 25279934 -26233650 + BSR/Beta Satellite Satellite 196 330 -49 583 291 11 27 chrY 25279997 25280399 -26233185 + BSR/Beta Satellite Satellite 1 395 -1 610 278 7 24 chrY 25280441 25281140 -26232444 + BSR/Beta Satellite Satellite 1 687 -21 374 357 14 0 chrY 25281225 25281394 -26232190 + BSR/Beta Satellite Satellite 1 171 -6 1339 272 28 11 chrY 25281467 25283166 -26230418 + BSR/Beta Satellite Satellite 1 1727 -12 679 263 17 30 chrY 25283285 25284627 -26228957 + BSR/Beta Satellite Satellite 1 1325 0 325 303 41 33 chrY 25284853 25285060 -26228524 + BSR/Beta Satellite Satellite 1 208 -7 1184 274 20 24 chrY 25285073 25286365 -26227219 + BSR/Beta Satellite Satellite 1 1286 -13 1025 299 13 2 chrY 25286381 25286844 -26226740 + BSR/Beta Satellite Satellite 1 468 -35 670 244 33 6 chrY 25286861 25287049 -26226535 + BSR/Beta Satellite Satellite 1 193 -46 569 259 11 41 chrY 25287062 25287742 -26225842 + BSR/Beta Satellite Satellite 1 659 -5 1105 265 24 21 chrY 25287777 25288105 -26225479 + BSR/Beta Satellite Satellite 35 363 -16 585 319 0 2 chrY 25288163 25288474 -26225110 + BSR/Beta Satellite Satellite 1 310 -47 561 266 20 21 chrY 25288535 25289593 -26223991 + BSR/Beta Satellite Satellite 1 1056 -7 1360 281 9 12 chrY 25289688 25290270 -26223314 + BSR/Beta Satellite Satellite 1 580 -45 294 321 28 0 chrY 25290460 25290569 -26223015 + BSR/Beta Satellite Satellite 37 148 -4 548 279 4 34 chrY 25290586 25291150 -26222434 + BSR/Beta Satellite Satellite 1 547 -2 349 338 23 0 chrY 25291358 25291491 -26222093 + BSR/Beta Satellite Satellite 2 137 -15 720 284 66 33 chrY 25291525 25292012 -26221572 + BSR/Beta Satellite Satellite 1 503 0 401 273 0 72 chrY 25292025 25292164 -26221420 + BSR/Beta Satellite Satellite 14 142 0 * 700 247 19 10 chrY 25292064 25292474 -26221110 + BSR/Beta Satellite Satellite 1 413 -46 1132 312 16 4 chrY 25292488 25293147 -26220437 + BSR/Beta Satellite Satellite 1 666 -49 546 272 14 23 chrY 25293163 25293985 -26219599 + BSR/Beta Satellite Satellite 1 814 -3 512 303 12 22 chrY 25293996 25294277 -26219307 + BSR/Beta Satellite Satellite 1 278 0 637 324 22 22 chrY 25294367 25294645 -26218939 + BSR/Beta Satellite Satellite 21 298 -81 8950 183 17 14 chrY 25294645 25297249 -26216335 + MER61B-int LTR ERV1 2139 4818 -399 776 57 9 0 chrY 25297251 25297357 -26216227 + (TTTC)n Simple_repeat Simple_repeat 1 107 0 1679 201 18 18 chrY 25297359 25297702 -26215882 + MER61B-int LTR ERV1 4875 5217 0 2017 194 23 44 chrY 25297702 25298136 -26215448 + MER61B LTR ERV1 1 425 0 463 263 45 20 chrY 25298143 25298341 -26215243 - L1M4 LINE L1 -1272 4874 4672 1311 232 4 4 chrY 25298394 25298666 -26214918 + AluJb SINE Alu 14 285 -27 216 86 0 0 chrY 25298693 25298728 -26214856 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 2725 200 23 24 chrY 25298821 25299397 -26214187 - LTR22 LTR ERVK -3 577 3 5174 194 45 31 chrY 25299399 25300072 -26213512 - HERVK22 LTR ERVK 0 6837 6175 3512 30 0 0 chrY 25300072 25300479 -26213105 - L1PA3 LINE L1 -1 6154 5748 5174 194 45 31 chrY 25300479 25302279 -26211305 - HERVK22 LTR ERVK -662 6175 2027 562 252 58 0 chrY 25302274 25302413 -26211171 - HERVK22 LTR ERVK -4364 2473 2327 * 2012 219 36 0 chrY 25302808 25303201 -26210383 - HERVK22 LTR ERVK -6142 695 289 641 168 10 0 chrY 25303211 25303312 -26210272 - LTR12 LTR ERV1 0 714 613 305 256 11 0 chrY 25303312 25303402 -26210182 - LTR30 LTR ERV1 -79 643 553 1505 142 118 9 chrY 25303403 25303781 -26209803 - LTR12 LTR ERV1 -406 2032 1 6287 116 6 0 chrY 25303781 25304670 -26208914 - HERV9 LTR ERV1 0 8399 7506 810 103 291 0 chrY 25304675 25304909 -26208675 - Harlequin LTR ERV1 -5755 1141 840 27427 113 14 9 chrY 25304910 25307261 -26206323 - Harlequin LTR ERV1 -1994 444 2483 2849 7 0 0 chrY 25307261 25307563 -26206021 - AluYa5 SINE Alu -9 302 1 27427 113 14 9 chrY 25307563 25310018 -26203566 - Harlequin LTR ERV1 46 2484 43 4117 118 106 86 chrY 25310019 25310829 -26202755 - LTR12 LTR ERV1 0 826 1 1509 149 0 66 chrY 25310834 25311122 -26202462 - HERVK22 LTR ERVK -6560 277 9 2428 207 49 27 chrY 25311166 25311721 -26201863 - LTR22 LTR ERVK -13 567 1 431 309 32 14 chrY 25311779 25311999 -26201585 - L1 LINE L1 -3276 2870 2647 193 138 17 17 chrY 25312028 25312086 -26201498 + T-rich Low_complexity Low_complexity 2 59 0 214 85 21 43 chrY 25312232 25312279 -26201305 + (TTTTTA)n Simple_repeat Simple_repeat 2 47 0 202 238 20 14 chrY 25312296 25312443 -26201141 + T-rich Low_complexity Low_complexity 3 150 0 204 256 49 0 chrY 25312454 25312536 -26201048 + T-rich Low_complexity Low_complexity 5 90 0 1197 242 44 34 chrY 25312949 25313247 -26200337 - AluSx SINE Alu 0 302 2 1428 231 3 40 chrY 25314108 25314433 -26199151 - LTR32 LTR ERVL -41 430 118 406 175 0 0 chrY 25314433 25314496 -26199088 - AluSp SINE Alu -16 296 234 685 162 34 0 chrY 25314496 25314613 -26198971 - AluSp SINE Alu -118 195 75 544 248 0 0 chrY 25314617 25314742 -26198842 - FLAM_C SINE Alu -8 125 1 1159 191 37 0 chrY 25316085 25316300 -26197284 - AluSq SINE Alu -86 227 5 30 0 0 0 chrY 25317470 25317500 -26196084 + AT_rich Low_complexity Low_complexity 1 30 0 5300 268 7 23 chrY 25317517 25319273 -26194311 + L1PA12 LINE L1 1 2004 -5577 3439 286 192 30 chrY 25319271 25320927 -26192657 + L1PA13 LINE L1 339 2262 -4525 * 233 235 0 85 chrY 25321043 25321196 -26192388 + A-rich Low_complexity Low_complexity 2 141 0 497 348 19 3 chrY 25321219 25321529 -26192055 + L1M4c LINE L1 1358 1672 -4712 251 282 19 0 chrY 25321553 25321656 -26191928 + L1M4c LINE L1 2452 2556 -3826 38436 96 8 4 chrY 25321708 25327833 -26185751 - L1PA5 LINE L1 -1 6153 2 557 276 148 17 chrY 25327840 25328261 -26185323 + L1M4c LINE L1 2594 3070 -3312 390 21 0 0 chrY 25328265 25328312 -26185272 + (TG)n Simple_repeat Simple_repeat 2 48 0 1316 176 0 127 chrY 25328312 25328636 -26184948 - AluSc SINE Alu -16 283 1 293 281 40 48 chrY 25328762 25328990 -26184594 + L1 LINE L1 4616 4842 -1304 743 267 23 19 chrY 25328991 25329553 -26184031 + BSR/Beta Satellite Satellite 1 564 -121 25 0 0 0 chrY 25329573 25329598 -26183986 + AT_rich Low_complexity Low_complexity 1 25 0 1953 162 0 0 chrY 25329598 25329906 -26183678 - AluY SINE Alu -3 308 1 365 197 0 0 chrY 25329916 25329977 -26183607 + BSR/Beta Satellite Satellite 279 339 -40 1205 298 10 25 chrY 25330027 25330678 -26182906 + BSR/Beta Satellite Satellite 1 641 -1 578 262 17 22 chrY 25330691 25331609 -26181975 + BSR/Beta Satellite Satellite 1 913 -6 1183 298 16 9 chrY 25331708 25332311 -26181273 + BSR/Beta Satellite Satellite 1 607 -15 509 269 28 19 chrY 25332545 25332752 -26180832 + BSR/Beta Satellite Satellite 1 208 -1 621 247 33 24 chrY 25332763 25333554 -26180030 + BSR/Beta Satellite Satellite 1 798 -45 4168 140 174 16 chrY 25333555 25334510 -26179074 + MER11B LTR ERVK 1 1213 -23 478 272 25 0 chrY 25334531 25334708 -26178876 + BSR/Beta Satellite Satellite 1 181 0 959 308 15 17 chrY 25334803 25335540 -26178044 + BSR/Beta Satellite Satellite 1 735 -33 547 272 13 46 chrY 25335666 25336273 -26177311 + BSR/Beta Satellite Satellite 1 586 -42 320 317 20 20 chrY 25336438 25336580 -26177004 + BSR/Beta Satellite Satellite 1 142 -1 1261 276 16 21 chrY 25336695 25337926 -26175658 + BSR/Beta Satellite Satellite 1 1225 -13 733 298 80 0 chrY 25337939 25338177 -26175407 + BSR/Beta Satellite Satellite 1 257 -122 294 225 18 63 chrY 25338245 25338356 -26175228 + BSR/Beta Satellite Satellite 31 136 0 * 462 281 5 0 chrY 25338264 25338384 -26175200 + BSR/Beta Satellite Satellite 1 120 -43 680 267 21 27 chrY 25338504 25339478 -26174106 + BSR/Beta Satellite Satellite 1 968 -34 890 258 39 78 chrY 25339600 25339957 -26173627 + BSR/Beta Satellite Satellite 26 368 -11 450 304 4 21 chrY 25339980 25340165 -26173419 + BSR/Beta Satellite Satellite 1 181 -3 417 196 131 0 chrY 25340177 25340284 -26173300 + AluSp/q SINE Alu 192 312 -1 355 239 22 109 chrY 25340284 25340422 -26173162 + BSR/Beta Satellite Satellite 17 142 0 572 275 23 24 chrY 25340510 25341310 -26172274 + BSR/Beta Satellite Satellite 1 799 -12 282 354 13 4 chrY 25341407 25341553 -26172031 + BSR/Beta Satellite Satellite 1 147 -30 1205 282 19 0 chrY 25341626 25342053 -26171531 + BSR/Beta Satellite Satellite 1 435 0 483 295 15 23 chrY 25342066 25342348 -26171236 + BSR/Beta Satellite Satellite 1 279 -10 225 244 0 0 chrY 25342376 25342421 -26171163 + BSR/Beta Satellite Satellite 52 96 -46 239 286 77 33 chrY 25342447 25342538 -26171046 - BSR/Beta Satellite Satellite -18 134 40 584 274 17 23 chrY 25342585 25343328 -26170256 - BSR/Beta Satellite Satellite 0 738 1 659 262 6 35 chrY 25343442 25343853 -26169731 - BSR/Beta Satellite Satellite -4 398 1 1246 306 15 18 chrY 25343879 25345458 -26168126 - BSR/Beta Satellite Satellite -5 1572 1 35048 106 27 7 chrY 25345530 25350620 -26162964 + L1PA5 LINE L1 3 5195 -951 4877 92 3 0 chrY 25350623 25351246 -26162338 + L1PA5 LINE L1 5530 6154 0 661 254 19 18 chrY 25351369 25351957 -26161627 - BSR/Beta Satellite Satellite 0 588 1 431 261 54 13 chrY 25351970 25352117 -26161467 - BSR/Beta Satellite Satellite 0 152 1 1269 267 15 32 chrY 25352166 25353066 -26160518 - BSR/Beta Satellite Satellite -5 884 1 531 281 1 35 chrY 25353080 25353527 -26160057 - BSR/Beta Satellite Satellite -6 432 1 1023 261 66 32 chrY 25353540 25353637 -26159947 - BSR/Beta Satellite Satellite -45 1433 1341 8345 54 1 0 chrY 25353637 25354602 -26158982 + LTR5 LTR ERVK 1 966 -3 1023 261 66 32 chrY 25354602 25354926 -26158658 - BSR/Beta Satellite Satellite -137 1341 1 337 343 22 8 chrY 25354978 25355197 -26158387 - BSR/Beta Satellite Satellite -3 222 1 698 262 9 36 chrY 25355243 25355952 -26157632 - BSR/Beta Satellite Satellite 0 690 1 1320 267 14 13 chrY 25356235 25356851 -26156733 - BSR/Beta Satellite Satellite -49 616 1 599 253 15 37 chrY 25356947 25357987 -26155597 - BSR/Beta Satellite Satellite 0 1016 1 970 289 8 10 chrY 25358052 25358718 -26154866 - BSR/Beta Satellite Satellite -2 664 1 542 270 34 36 chrY 25358952 25359968 -26153616 - BSR/Beta Satellite Satellite 0 1013 1 1263 317 3 8 chrY 25359999 25360509 -26153075 - BSR/Beta Satellite Satellite -44 507 1 1360 274 16 8 chrY 25360528 25361742 -26151842 - BSR/Beta Satellite Satellite -44 1223 1 282 348 35 14 chrY 25361831 25361972 -26151612 - BSR/Beta Satellite Satellite -6 146 3 581 271 11 19 chrY 25362129 25362522 -26151062 - BSR/Beta Satellite Satellite -4 390 1 588 295 24 29 chrY 25362537 25362851 -26150733 - BSR/Beta Satellite Satellite 0 312 1 620 281 9 24 chrY 25362886 25363299 -26150285 - BSR/Beta Satellite Satellite -4 406 1 824 288 65 27 chrY 25363334 25363621 -26149963 - BSR/Beta Satellite Satellite -29 297 1 506 315 7 0 chrY 25363730 25363931 -26149653 - BSR/Beta Satellite Satellite -2 202 1 479 289 21 10 chrY 25364016 25364530 -26149054 - BSR/Beta Satellite Satellite 0 519 1 30 0 0 0 chrY 25364533 25364563 -26149021 + AT_rich Low_complexity Low_complexity 1 30 0 436 252 41 44 chrY 25364574 25364804 -26148780 - BSR/Beta Satellite Satellite -18 229 1 348 278 14 62 chrY 25364820 25364964 -26148620 - BSR/Beta Satellite Satellite -4 138 2 598 280 7 102 chrY 25365044 25365348 -26148236 - BSR/Beta Satellite Satellite -100 279 5 1234 272 17 23 chrY 25365368 25366379 -26147205 - BSR/Beta Satellite Satellite -44 1004 1 355 336 9 9 chrY 25366397 25366600 -26146984 - BSR/Beta Satellite Satellite -52 203 1 250 281 12 12 chrY 25366712 25366794 -26146790 - BSR/Beta Satellite Satellite -43 99 18 1736 131 0 33 chrY 25366801 25367075 -26146509 - AluY SINE Alu 0 311 47 474 229 72 33 chrY 25367085 25367346 -26146238 - BSR/Beta Satellite Satellite 0 271 1 571 213 11 35 chrY 25367359 25367578 -26146006 - BSR/Beta Satellite Satellite 0 213 1 1073 293 15 11 chrY 25367761 25368456 -26145128 - BSR/Beta Satellite Satellite -49 698 1 558 253 15 49 chrY 25368720 25369833 -26143751 - BSR/Beta Satellite Satellite 0 1074 1 1053 290 22 13 chrY 25369870 25371038 -26142546 - BSR/Beta Satellite Satellite 0 1178 1 260 304 15 0 chrY 25371049 25371184 -26142400 - L1 LINE L1 -1314 4832 4696 201 167 0 0 chrY 25371184 25371220 -26142364 + T-rich Low_complexity Low_complexity 1 36 0 30338 53 7 2 chrY 25371227 25375985 -26137599 - L1PA4 LINE L1 -141 6014 1230 853 70 31 0 chrY 25375985 25376113 -26137471 + L1PA4 LINE L1 1111 1242 -4904 2128 126 3 3 chrY 25376221 25376531 -26137053 + AluY SINE Alu 1 310 -1 1561 223 7 3 chrY 25376637 25376942 -26136642 + AluSc SINE Alu 1 306 -3 361 280 111 63 chrY 25376954 25377565 -26136019 - L1M4c LINE L1 -3280 3102 2463 2692 165 28 12 chrY 25377666 25378247 -26135337 + LTR10E LTR ERV1 9 598 -35 317 353 31 0 chrY 25378261 25378485 -26135099 - L1M4c LINE L1 -4784 1600 1370 212 186 17 34 chrY 25378556 25378615 -26134969 + T-rich Low_complexity Low_complexity 3 60 0 359 20 0 20 chrY 25378983 25379032 -26134552 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1497 199 0 0 chrY 25379041 25379307 -26134277 - AluSq SINE Alu -39 274 9 1289 262 55 19 chrY 25381163 25381686 -26131898 - L1PA13 LINE L1 -3735 3062 2521 1378 300 16 5 chrY 25381703 25382086 -26131498 - L1PA13 LINE L1 -6055 732 346 * 6082 257 173 2 chrY 25382085 25383798 -26129786 - L1PA12 LINE L1 -5574 2007 1 1464 209 50 0 chrY 25383837 25383956 -26129628 + AluSc SINE Alu 1 113 -196 200 59 29 0 chrY 25383956 25383990 -26129594 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1464 209 50 0 chrY 25383990 25384153 -26129431 + AluSc SINE Alu 113 297 -12 1627 186 14 7 chrY 25386084 25386374 -26127210 - AluY SINE Alu -19 292 1 25 0 0 0 chrY 25386656 25386681 -26126903 + AT_rich Low_complexity Low_complexity 1 25 0 39069 47 23 1 chrY 25386686 25392701 -26120883 - L1PA2 LINE L1 -4 6151 4 1492 246 23 63 chrY 25395224 25395341 -26118243 + LTR32 LTR ERVL 15 135 -336 1767 193 3 0 chrY 25395341 25395642 -26117942 + AluSp SINE Alu 1 302 -11 1492 246 23 63 chrY 25395642 25395999 -26117585 + LTR32 LTR ERVL 135 470 -1 572 64 0 0 chrY 25396780 25396858 -26116726 - L1PA4 LINE L1 -3542 2604 2527 21218 61 6 22 chrY 25396858 25400425 -26113159 + L1PA4 LINE L1 2606 6152 -3 189 0 0 0 chrY 25400448 25400469 -26113115 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 341 367 44 24 chrY 25400536 25400784 -26112800 + L1 LINE L1 1545 1797 -4982 214 250 0 15 chrY 25400872 25400940 -26112644 + A-rich Low_complexity Low_complexity 3 69 0 433 389 58 0 chrY 25400981 25401259 -26112325 + L1 LINE L1 2209 2502 -4347 504 270 101 24 chrY 25401308 25401916 -26111668 + L1 LINE L1 2932 3577 -3271 1496 211 10 16 chrY 25401918 25402226 -26111358 - AluSc SINE Alu -3 306 1 480 276 77 17 chrY 25402253 25402550 -26111034 + L1 LINE L1 5223 5537 -1311 540 284 10 10 chrY 25402558 25402830 -26110754 + BSR/Beta Satellite Satellite 1 272 -40 247 302 94 0 chrY 25402907 25403013 -26110571 + BSR/Beta Satellite Satellite 41 156 -223 1981 171 0 3 chrY 25403020 25403329 -26110255 + AluSg SINE Alu 1 308 -2 747 286 9 3 chrY 25403377 25403562 -26110022 + BSR/Beta Satellite Satellite 1 186 -13 1136 275 16 23 chrY 25403573 25404114 -26109470 + BSR/Beta Satellite Satellite 1 544 -1076 279 0 0 0 chrY 25404114 25404145 -26109439 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1136 275 16 23 chrY 25404145 25405198 -26108386 + BSR/Beta Satellite Satellite 544 1613 -7 1036 314 0 0 chrY 25405301 25405597 -26107987 + BSR/Beta Satellite Satellite 26 321 -58 508 271 15 25 chrY 25405711 25405912 -26107672 + BSR/Beta Satellite Satellite 1 198 -15 620 286 16 21 chrY 25405941 25406821 -26106763 + BSR/Beta Satellite Satellite 1 875 -20 291 379 8 0 chrY 25406983 25407140 -26106444 + BSR/Beta Satellite Satellite 1 158 -30 1109 274 18 29 chrY 25407222 25408042 -26105542 + BSR/Beta Satellite Satellite 1 810 -50 1148 289 7 7 chrY 25408078 25408866 -26104718 + BSR/Beta Satellite Satellite 1 788 -34 1867 141 0 44 chrY 25408876 25409217 -26104367 + AluSg SINE Alu 1 310 0 460 255 11 38 chrY 25409249 25409687 -26103897 + BSR/Beta Satellite Satellite 1 426 0 351 294 41 68 chrY 25409762 25409908 -26103676 + BSR/Beta Satellite Satellite 1 142 0 * 504 278 14 13 chrY 25409791 25410118 -26103466 + BSR/Beta Satellite Satellite 1 327 0 887 302 21 18 chrY 25410141 25410475 -26103109 + BSR/Beta Satellite Satellite 29 363 -16 768 318 0 4 chrY 25410542 25410926 -26102658 + BSR/Beta Satellite Satellite 1 382 -47 479 249 25 27 chrY 25410977 25411671 -26101913 + BSR/Beta Satellite Satellite 1 692 -25 376 279 38 17 chrY 25411757 25412030 -26101554 + BSR/Beta Satellite Satellite 1 278 -6 1213 290 17 22 chrY 25412105 25412789 -26100795 + BSR/Beta Satellite Satellite 1 680 -21 3694 175 23 49 chrY 25412799 25413808 -26099776 + MER11C LTR ERVK 1 1071 0 3476 146 50 97 chrY 25413808 25414701 -26098883 + HERVK11 LTR ERVK 1 851 -7102 4487 88 3 0 chrY 25414701 25415317 -26098267 + HERVK11 LTR ERVK 1165 1782 -6171 10614 71 11 5 chrY 25415317 25416782 -26096802 + HERVK11 LTR ERVK 3128 4601 -3352 8170 96 0 11 chrY 25416780 25417872 -26095712 + HERVK11 LTR ERVK 5525 6604 -1349 * 1359 145 40 24 chrY 25417872 25418121 -26095463 + MER11B LTR ERVK 984 1236 0 309 347 8 0 chrY 25418139 25418263 -26095321 + BSR/Beta Satellite Satellite 7 131 -11 539 261 2 38 chrY 25418280 25418510 -26095074 + BSR/Beta Satellite Satellite 1 221 -27 562 253 11 42 chrY 25418562 25418950 -26094634 + BSR/Beta Satellite Satellite 1 376 -37 266 300 91 9 chrY 25419108 25419218 -26094366 + BSR/Beta Satellite Satellite 258 376 -3 613 238 23 26 chrY 25419266 25419994 -26093590 + BSR/Beta Satellite Satellite 1 725 -9 1842 148 3 35 chrY 25420002 25420313 -26093271 - AluY SINE Alu -10 301 1 278 311 11 11 chrY 25420331 25420421 -26093163 + BSR/Beta Satellite Satellite 7 96 -46 958 269 97 10 chrY 25420438 25420736 -26092848 + BSR/Beta Satellite Satellite 47 370 -9 864 342 12 0 chrY 25420753 25421072 -26092512 + BSR/Beta Satellite Satellite 9 331 -48 444 273 0 0 chrY 25421127 25421226 -26092358 + BSR/Beta Satellite Satellite 1 99 -43 253 295 58 19 chrY 25421310 25421449 -26092135 + BSR/Beta Satellite Satellite 1 144 -44 624 279 16 12 chrY 25421492 25422420 -26091164 + BSR/Beta Satellite Satellite 1 931 0 802 262 45 35 chrY 25422511 25422801 -26090783 + BSR/Beta Satellite Satellite 23 315 -64 1027 265 21 25 chrY 25422858 25423679 -26089905 + BSR/Beta Satellite Satellite 1 817 -1 1020 250 15 25 chrY 25423690 25424507 -26089077 + BSR/Beta Satellite Satellite 1 825 -859 1745 248 77 15 chrY 25424507 25424986 -26088598 - LTR22 LTR ERVK 0 509 1 1020 250 15 25 chrY 25424986 25425383 -26088201 + BSR/Beta Satellite Satellite 825 1675 -9 593 259 3 16 chrY 25425394 25425706 -26087878 + BSR/Beta Satellite Satellite 1 307 -46 1236 299 12 11 chrY 25425842 25426456 -26087128 + BSR/Beta Satellite Satellite 1 614 -15 571 267 15 30 chrY 25426730 25427455 -26086129 + BSR/Beta Satellite Satellite 1 713 -70 991 261 35 24 chrY 25427699 25428169 -26085415 + BSR/Beta Satellite Satellite 1 475 0 582 266 22 27 chrY 25428183 25428630 -26084954 + BSR/Beta Satellite Satellite 1 444 -47 906 282 50 17 chrY 25428641 25429139 -26084445 + BSR/Beta Satellite Satellite 1 514 -4 591 271 27 21 chrY 25429234 25430314 -26083270 + BSR/Beta Satellite Satellite 1 1086 -13 981 283 17 19 chrY 25430331 25430832 -26082752 + BSR/Beta Satellite Satellite 1 500 -2 625 253 22 34 chrY 25430870 25431267 -26082317 + BSR/Beta Satellite Satellite 1 392 -3 492 287 35 33 chrY 25431429 25431915 -26081669 + BSR/Beta Satellite Satellite 1 487 0 1522 277 10 4 chrY 25432005 25432438 -26081146 + BSR/Beta Satellite Satellite 1 435 -52 244 309 12 0 chrY 25432500 25432581 -26081003 + BSR/Beta Satellite Satellite 15 96 -46 420 326 9 0 chrY 25432639 25432786 -26080798 + BSR/Beta Satellite Satellite 1 148 -30 383 135 0 14 chrY 25432893 25432967 -26080617 + (CA)n Simple_repeat Simple_repeat 2 74 0 1172 294 3 6 chrY 25433068 25433395 -26080189 + BSR/Beta Satellite Satellite 45 370 -9 409 364 98 3 chrY 25433407 25433704 -26079880 + BSR/Beta Satellite Satellite 7 331 -48 459 262 5 10 chrY 25433717 25433848 -26079736 + BSR/Beta Satellite Satellite 1 130 -39 590 276 12 22 chrY 25433972 25434910 -26078674 + BSR/Beta Satellite Satellite 1 928 -3 990 313 22 28 chrY 25435088 25435672 -26077912 + BSR/Beta Satellite Satellite 1 894 -201 1983 126 6 28 chrY 25435672 25435989 -26077595 + AluY SINE Alu 1 310 -1 990 313 22 28 chrY 25435989 25436189 -26077395 + BSR/Beta Satellite Satellite 894 1094 -1 653 279 24 21 chrY 25436207 25437006 -26076578 + BSR/Beta Satellite Satellite 1 801 -7 231 385 0 0 chrY 25437139 25437243 -26076341 + BSR/Beta Satellite Satellite 18 121 -31 1469 270 30 11 chrY 25437317 25438101 -26075483 + BSR/Beta Satellite Satellite 1 799 -7 227 341 0 24 chrY 25438117 25438243 -26075341 + BSR/Beta Satellite Satellite 14 136 0 * 1191 293 13 4 chrY 25438153 25438918 -26074666 + BSR/Beta Satellite Satellite 1 771 -51 371 253 82 16 chrY 25438930 25439081 -26074503 + BSR/Beta Satellite Satellite 1 160 -12 586 264 19 29 chrY 25439104 25440015 -26073569 + BSR/Beta Satellite Satellite 1 901 -6 1208 284 13 20 chrY 25440109 25440640 -26072944 + BSR/Beta Satellite Satellite 1 527 -27 2288 253 50 26 chrY 25440652 25441711 -26071873 - L1M2 LINE L1 -743 5403 4394 1675 238 22 12 chrY 25441708 25442200 -26071384 + L1M2 LINE L1 3905 4401 -1745 * 1630 232 22 11 chrY 25442215 25442452 -26071132 + MER61B LTR ERV1 60 304 -121 201 39 0 0 chrY 25442452 25442478 -26071106 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1630 232 22 11 chrY 25442478 25442602 -26070982 + MER61B LTR ERV1 304 425 0 574 189 49 56 chrY 25442602 25442745 -26070839 + MER61B-int LTR ERV1 2 143 -5074 2107 212 26 41 chrY 25442805 25443371 -26070213 + MER61B-int LTR ERV1 280 837 -4380 1784 137 11 0 chrY 25443382 25443653 -26069931 + MER61B-int LTR ERV1 944 1217 -4000 * 4788 150 22 27 chrY 25443644 25443693 -26069891 + MER61B-int LTR ERV1 1361 1409 -3808 1821 124 28 25 chrY 25443693 25444002 -26069582 + AluY SINE Alu 1 310 0 4788 150 22 27 chrY 25444002 25444879 -26068705 + MER61B-int LTR ERV1 1409 2283 -2934 2684 130 29 0 chrY 25444943 25445352 -26068232 + HERVL-A1 LTR ERVL 5234 5654 0 2137 166 17 8 chrY 25445352 25445707 -26067877 + MLT2A1 LTR ERVL 1 358 -86 22 94 0 0 chrY 25446534 25446598 -26066986 + AT_rich Low_complexity Low_complexity 1 64 0 30 77 0 0 chrY 25446798 25446863 -26066721 + AT_rich Low_complexity Low_complexity 1 65 0 221 102 0 92 chrY 25447168 25447266 -26066318 + (TTAA)n Simple_repeat Simple_repeat 2 90 0 728 337 74 49 chrY 25447654 25448350 -26065234 + L1M4 LINE L1 3036 3760 -2386 1591 207 149 13 chrY 25448350 25448726 -26064858 - MSTA LTR MaLR -1 427 1 728 337 74 49 chrY 25448726 25448926 -26064658 + L1M4 LINE L1 3760 3954 -2192 494 295 28 51 chrY 25448961 25449215 -26064369 + L1M4 LINE L1 4053 4300 -1846 529 223 19 0 chrY 25449343 25449446 -26064138 + MER2 DNA MER2_type 6 110 -235 1543 298 34 42 chrY 25449449 25449966 -26063618 + MER66B-int LTR ERV1 4622 5142 -2614 1838 176 3 0 chrY 25449966 25450268 -26063316 - AluSc SINE Alu -6 303 1 1543 298 34 42 chrY 25450268 25451162 -26062422 + MER66B-int LTR ERV1 5142 6189 -1567 1668 196 33 15 chrY 25451288 25451625 -26061959 + MER66B-int LTR ERV1 6334 6676 0 1199 225 92 22 chrY 25451625 25451941 -26061643 + MER66B LTR ERV1 1 338 -148 1720 90 369 137 chrY 25451988 25452617 -26060967 - LTR12 LTR ERV1 0 2035 31 57922 109 21 10 chrY 25452670 25461089 -26052495 - HERV9 LTR ERV1 0 8399 1 4810 139 78 18 chrY 25461089 25461868 -26051716 - LTR12 LTR ERV1 0 826 1 920 217 38 52 chrY 25461946 25462236 -26051348 - pTR5 LTR ERV1 -1410 1028 743 294 211 42 0 chrY 25462278 25462349 -26051235 + MER66B LTR ERV1 411 484 -2 537 244 89 44 chrY 25462400 25462715 -26050869 + MER96B DNA MER1_type? 24 352 -65 2040 246 119 17 chrY 25462732 25463533 -26050051 - L1MC1 LINE L1 -22 6311 5374 716 161 54 7 chrY 25463534 25463683 -26049901 + FRAM SINE Alu 21 176 0 201 147 0 0 chrY 25463685 25463719 -26049865 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 181 200 46 0 chrY 25463711 25463776 -26049808 + GA-rich Low_complexity Low_complexity 2 69 0 * 1190 225 11 7 chrY 25463879 25464163 -26049421 - AluSx SINE Alu -15 297 13 348 24 0 0 chrY 25464336 25464377 -26049207 + (TG)n Simple_repeat Simple_repeat 2 42 0 218 322 99 8 chrY 25464653 25464774 -26048810 - MIR SINE MIR -74 188 57 10223 117 3 0 chrY 25465858 25467314 -26046270 + L1PA5 LINE L1 1 1460 -4686 11063 44 0 1 chrY 25467330 25468940 -26044644 - L1PA3 LINE L1 -743 5403 3795 5728 56 16 1 chrY 25468940 25469669 -26043915 + L1PA3 LINE L1 5408 6155 0 27821 68 2 9 chrY 25469669 25474405 -26039179 + L1PA5 LINE L1 1446 6152 -2 21 0 0 0 chrY 25474899 25474920 -26038664 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 25474990 25475011 -26038573 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrY 25475198 25475220 -26038364 + AT_rich Low_complexity Low_complexity 1 22 0 387 305 0 0 chrY 25476523 25476628 -26036956 + FLAM_C SINE Alu 6 110 -23 292 149 15 45 chrY 25476640 25476707 -26036877 - MER1B DNA MER1_type -13 320 256 1272 177 49 11 chrY 25476853 25477118 -26036466 - MER1B DNA MER1_type -64 275 1 824 202 25 62 chrY 25477227 25477470 -26036114 + AluJb SINE Alu 1 234 -78 29 0 0 0 chrY 25477834 25477863 -26035721 + AT_rich Low_complexity Low_complexity 1 29 0 315 0 0 0 chrY 25478008 25478043 -26035541 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chrY 25478098 25478126 -26035458 + AT_rich Low_complexity Low_complexity 1 28 0 185 341 135 16 chrY 25479957 25480083 -26033501 - L2 LINE L2 -288 3025 2885 22 56 0 0 chrY 25481225 25481261 -26032323 + AT_rich Low_complexity Low_complexity 1 36 0 28 61 0 0 chrY 25482054 25482103 -26031481 + AT_rich Low_complexity Low_complexity 1 49 0 1800 139 8 0 chrY 25482458 25482717 -26030867 - AluSc SINE Alu -48 261 1 458 17 17 0 chrY 25482893 25482952 -26030632 + (TA)n Simple_repeat Simple_repeat 2 61 0 1955 113 7 0 chrY 25482952 25483226 -26030358 - AluY SINE Alu -35 276 1 1187 206 86 37 chrY 25483332 25483760 -26029824 - L1M4 LINE L1 -429 5745 5297 837 133 22 0 chrY 25484838 25484973 -26028611 + AluSp/q SINE Alu 171 308 -5 1390 198 28 25 chrY 25485846 25486129 -26027455 - AluSg SINE Alu -22 288 5 1414 216 16 13 chrY 25486643 25486949 -26026635 + AluJb SINE Alu 6 312 0 640 246 48 66 chrY 25487243 25487368 -26026216 - MLT1A1 LTR MaLR -19 346 220 2164 117 3 19 chrY 25487368 25487684 -26025900 - AluY SINE Alu 0 311 1 279 113 0 0 chrY 25487685 25487738 -26025846 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1888 125 29 4 chrY 25487739 25488020 -26025564 - AluSc SINE Alu -21 288 1 640 246 48 66 chrY 25488020 25488162 -26025422 - MLT1A1 LTR MaLR -144 221 80 658 243 107 27 chrY 25488171 25488658 -26024926 - LTR65-int LTR ERV1 -258 4678 4125 432 0 0 0 chrY 25488658 25488706 -26024878 + (TA)n Simple_repeat Simple_repeat 1 48 0 1153 186 0 83 chrY 25488732 25488985 -26024599 - AluJb SINE Alu -80 232 1 352 220 13 80 chrY 25489066 25489216 -26024368 - LTR65-int LTR ERV1 -1121 3815 3676 1927 167 10 0 chrY 25489303 25489602 -26023982 - AluSx SINE Alu -10 302 1 2371 243 89 41 chrY 25489615 25490693 -26022891 - LTR65-int LTR ERV1 -3520 1416 287 270 247 47 24 chrY 25490707 25490792 -26022792 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 24 32 0 0 chrY 25492628 25492659 -26020925 + AT_rich Low_complexity Low_complexity 1 31 0 283 323 0 0 chrY 25493156 25493249 -26020335 + L1M3de LINE L1 753 845 -6284 225 306 56 0 chrY 25493277 25493349 -26020235 + L1M3de LINE L1 1416 1491 -5638 2255 282 42 55 chrY 25493927 25495060 -26018524 + L1M3de LINE L1 286 2051 -4602 1829 155 6 22 chrY 25495097 25495413 -26018171 + AluSx SINE Alu 1 311 -1 1394 271 97 70 chrY 25495454 25496255 -26017329 + L1M3de LINE L1 15 837 -6372 823 256 13 76 chrY 25496227 25496621 -26016963 + L1M3de LINE L1 1564 1932 -5277 * 324 320 148 47 chrY 25496634 25497018 -26016566 - L1MEc LINE L1 -5918 478 56 1299 182 73 11 chrY 25497452 25497727 -26015857 - AluSg SINE Alu -17 293 2 319 56 37 0 chrY 25497729 25497783 -26015801 + (TAAAAA)n Simple_repeat Simple_repeat 2 57 0 2166 98 3 25 chrY 25497786 25498104 -26015480 + AluY SINE Alu 1 311 0 2357 81 7 0 chrY 25498150 25498459 -26015125 - AluY SINE Alu 0 311 1 1414 270 87 11 chrY 25498687 25499309 -26014275 - LTR65 LTR ERV1 0 669 1 1386 225 7 14 chrY 25499895 25500188 -26013396 + AluSx SINE Alu 1 291 -21 22 35 0 0 chrY 25500188 25500217 -26013367 + AT_rich Low_complexity Low_complexity 1 29 0 792 207 0 30 chrY 25500249 25500418 -26013166 - FRAM SINE Alu -6 170 7 198 0 0 0 chrY 25500422 25500444 -26013140 + (TG)n Simple_repeat Simple_repeat 2 23 0 2061 125 0 3 chrY 25502106 25502394 -26011190 + AluSg SINE Alu 2 288 -22 4022 231 81 16 chrY 25502998 25503970 -26009614 - L1MB8 LINE L1 0 6178 5271 2350 113 0 0 chrY 25503970 25504270 -26009314 - AluSg SINE Alu -10 300 1 4022 231 81 16 chrY 25504270 25505758 -26007826 - L1MB8 LINE L1 -907 5271 3549 287 275 147 37 chrY 25505764 25505873 -26007711 - L2 LINE L2 0 3313 3193 207 139 0 0 chrY 25506104 25506140 -26007444 + (TC)n Simple_repeat Simple_repeat 1 36 0 240 250 121 73 chrY 25506833 25506957 -26006627 - L2 LINE L2 0 3272 3143 272 286 86 19 chrY 25507163 25507268 -26006316 - L2 LINE L2 -12 3301 3190 2021 152 0 0 chrY 25507473 25507770 -26005814 - AluSx SINE Alu -15 297 1 1822 171 30 7 chrY 25508216 25508521 -26005063 - AluJo SINE Alu 0 312 1 459 287 101 71 chrY 25508840 25509248 -26004336 + L2 LINE L2 2844 3263 -50 26 64 0 0 chrY 25509392 25509439 -26004145 + AT_rich Low_complexity Low_complexity 1 47 0 198 393 60 0 chrY 25509558 25509642 -26003942 - L2 LINE L2 -25 3247 3159 2229 115 6 6 chrY 25509656 25509968 -26003616 - AluSp SINE Alu -1 312 1 2038 176 2 35 chrY 25510313 25510716 -26002868 - MLT1B LTR MaLR 0 390 1 318 273 49 77 chrY 25510903 25510982 -26002602 + MER5B DNA MER1_type 1 81 -97 3316 122 6 10 chrY 25510982 25511481 -26002103 - LOR1a LTR ERV1 0 497 1 318 273 49 77 chrY 25511481 25511496 -26002088 + MER5B DNA MER1_type 81 95 -83 2384 95 0 0 chrY 25511496 25511800 -26001784 + AluY SINE Alu 1 304 -7 318 273 49 77 chrY 25511800 25511887 -26001697 + MER5B DNA MER1_type 95 178 0 255 313 40 30 chrY 25512110 25512209 -26001375 - L2 LINE L2 -6 3266 3167 342 45 0 0 chrY 25512599 25512643 -26000941 + (TG)n Simple_repeat Simple_repeat 1 44 0 291 28 0 0 chrY 25512642 25512678 -26000906 + (GA)n Simple_repeat Simple_repeat 1 36 0 * 21 0 0 0 chrY 25513812 25513833 -25999751 + AT_rich Low_complexity Low_complexity 1 21 0 360 269 97 16 chrY 25514622 25514808 -25998776 + L1MCc LINE L1 18 218 -6205 1698 189 7 17 chrY 25514926 25515223 -25998361 + AluJo SINE Alu 1 294 -18 185 300 0 20 chrY 25515353 25515403 -25998181 - MIR SINE MIR -67 141 93 2443 154 20 7 chrY 25515636 25516078 -25997506 + LOR1a LTR ERV1 1 448 -49 951 156 0 0 chrY 25516130 25516271 -25997313 - AluJb SINE Alu -171 141 1 433 138 0 0 chrY 25516272 25516337 -25997247 + LOR1b LTR ERV1 397 461 0 39 50 0 0 chrY 25516470 25516530 -25997054 + AT_rich Low_complexity Low_complexity 1 60 0 1901 158 7 0 chrY 25516782 25517066 -25996518 + AluSx SINE Alu 9 294 -18 2814 140 19 20 chrY 25517159 25517646 -25995938 + LTR45B LTR ERV1 2 487 -2 183 129 0 0 chrY 25517709 25517740 -25995844 + (ATG)n Simple_repeat Simple_repeat 1 31 0 1987 156 7 0 chrY 25517765 25518073 -25995511 + AluSx SINE Alu 1 310 -2 557 309 26 34 chrY 25518089 25518309 -25995275 - MIR SINE MIR -48 214 2 2048 159 0 0 chrY 25518590 25518891 -25994693 + AluSx SINE Alu 1 301 -11 426 261 52 28 chrY 25519527 25519738 -25993846 - L1MC5 LINE L1 -166 7795 7580 473 222 18 105 chrY 25519839 25519903 -25993681 + MER103 DNA DNA 8 76 -90 2620 53 0 0 chrY 25519903 25520205 -25993379 - AluY SINE Alu -7 304 3 473 222 18 105 chrY 25520205 25520311 -25993273 + MER103 DNA DNA 76 163 -3 688 246 99 79 chrY 25521825 25522025 -25991559 - L1MC4 LINE L1 0 8042 7848 2512 64 0 0 chrY 25522025 25522323 -25991261 - AluY SINE Alu -13 298 1 688 246 99 79 chrY 25522323 25522530 -25991054 - L1MC4 LINE L1 -194 7848 7647 2156 126 0 3 chrY 25522530 25522831 -25990753 - AluSx SINE Alu -12 300 1 688 246 99 79 chrY 25522831 25522999 -25990585 - L1MC4 LINE L1 -395 7647 7349 2691 167 55 66 chrY 25523071 25523311 -25990273 + L1MB8 LINE L1 5546 5787 -391 2186 127 3 3 chrY 25523311 25523618 -25989966 + AluSx SINE Alu 6 312 0 2691 167 55 66 chrY 25523618 25524017 -25989567 + L1MB8 LINE L1 5787 6178 0 199 271 17 0 chrY 25524378 25524437 -25989147 - MIR SINE MIR -106 102 43 651 231 193 0 chrY 25524735 25524947 -25988637 + MIR SINE MIR 5 257 -5 426 324 24 29 chrY 25525092 25525299 -25988285 + MIR3 SINE MIR 3 208 0 1067 205 58 5 chrY 25525476 25525700 -25987884 + MER8 DNA MER2_type 4 239 0 2476 65 10 0 chrY 25525750 25526043 -25987541 - AluY SINE Alu -15 296 1 303 28 0 0 chrY 25526470 25526506 -25987078 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 1651 188 18 0 chrY 25526507 25526783 -25986801 - AluJo SINE Alu -31 281 1 263 296 0 0 chrY 25526787 25526858 -25986726 + L2 LINE L2 3227 3297 -16 690 283 85 0 chrY 25526902 25527079 -25986505 - MLT1F1 LTR MaLR -349 218 27 495 0 0 0 chrY 25527079 25527134 -25986450 + (TG)n Simple_repeat Simple_repeat 2 56 0 1261 150 11 0 chrY 25527134 25527321 -25986263 - AluSg/x SINE Alu -27 285 97 2102 122 3 23 chrY 25527326 25527630 -25985954 + AluSc SINE Alu 1 298 -11 279 0 0 0 chrY 25527631 25527662 -25985922 + (CA)n Simple_repeat Simple_repeat 2 32 0 589 241 0 0 chrY 25527663 25527771 -25985813 + MLT1F1 LTR MaLR 26 133 -434 667 200 17 0 chrY 25527772 25527892 -25985692 + FLAM_C SINE Alu 3 124 -19 1748 215 115 10 chrY 25527917 25528326 -25985258 + MLT1F1 LTR MaLR 116 567 0 717 233 168 67 chrY 25529016 25529420 -25984164 - MLT1J1 LTR MaLR -1 445 1 1631 206 3 0 chrY 25529803 25530085 -25983499 + AluJo SINE Alu 1 283 -29 2371 70 0 38 chrY 25530316 25530631 -25982953 + AluY SINE Alu 1 303 -8 310 403 62 6 chrY 25530686 25530862 -25982722 + MIR3 SINE MIR 20 205 -3 248 246 18 18 chrY 25530881 25530938 -25982646 + L3 LINE CR1 1420 1476 -101 552 247 50 63 chrY 25530939 25531178 -25982406 - MIR SINE MIR -2 260 25 2171 126 0 0 chrY 25531235 25531536 -25982048 - AluSx SINE Alu -11 301 1 2207 104 40 0 chrY 25531585 25531884 -25981700 + AluY SINE Alu 1 311 0 1304 187 39 21 chrY 25532175 25532334 -25981250 - AluJb SINE Alu -24 288 120 246 95 0 0 chrY 25532334 25532376 -25981208 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1304 187 39 21 chrY 25532376 25532499 -25981085 - AluJb SINE Alu -192 120 1 475 332 75 26 chrY 25532640 25532866 -25980718 + MIR SINE MIR 12 248 -14 1967 137 7 27 chrY 25532956 25533256 -25980328 + AluSx SINE Alu 1 294 -18 1525 182 0 18 chrY 25534043 25534323 -25979261 + AluJo SINE Alu 30 304 -8 23 54 0 0 chrY 25534323 25534360 -25979224 + AT_rich Low_complexity Low_complexity 1 37 0 2273 110 0 0 chrY 25534555 25534855 -25978729 + AluSq SINE Alu 1 300 -13 2010 137 10 3 chrY 25536142 25536441 -25977143 + AluSq SINE Alu 1 301 -12 3820 114 32 50 chrY 25537448 25538104 -25975480 + LTR9B LTR ERV1 1 644 0 610 234 76 35 chrY 25538205 25538376 -25975208 + MLT1K LTR MaLR 395 572 -16 239 363 44 28 chrY 25538521 25538703 -25974881 - MER5A DNA MER1_type -3 186 2 218 325 25 33 chrY 25539026 25539146 -25974438 - MIR SINE MIR -124 138 20 4612 108 44 39 chrY 25539388 25539740 -25973844 + MER4E LTR ERV1 1 350 -429 2191 102 20 7 chrY 25539740 25540033 -25973551 - AluSg SINE Alu -13 297 1 4612 108 44 39 chrY 25540033 25540455 -25973129 + MER4E LTR ERV1 350 779 0 415 288 212 11 chrY 25541231 25541505 -25972079 - L1ME4a LINE L1 -260 5861 5533 288 280 93 28 chrY 25541672 25541779 -25971805 - MIR SINE MIR -74 188 75 1798 221 37 42 chrY 25542009 25542466 -25971118 + MLT1E3 LTR MaLR 161 615 -9 890 201 0 6 chrY 25542614 25542819 -25970765 + FRAM SINE Alu 1 176 0 308 297 0 0 chrY 25544068 25544159 -25969425 + MIR SINE MIR 64 154 -108 521 220 36 36 chrY 25544384 25544552 -25969032 - MER5B DNA MER1_type 0 178 11 231 88 0 0 chrY 25545128 25545162 -25968422 + (TG)n Simple_repeat Simple_repeat 2 35 0 596 206 174 0 chrY 25545735 25545890 -25967694 + L2 LINE L2 3118 3299 -14 486 180 0 0 chrY 25545894 25545994 -25967590 + GA-rich Low_complexity Low_complexity 4 103 0 213 328 42 34 chrY 25545994 25546113 -25967471 + MIR SINE MIR 14 133 -129 1268 240 56 36 chrY 25546626 25547071 -25966513 - LTR37B LTR ERV1 0 468 15 2016 143 0 3 chrY 25547072 25547365 -25966219 - AluSq SINE Alu -21 292 1 2354 90 0 3 chrY 25547980 25548279 -25965305 - AluSx SINE Alu -14 298 1 231 258 131 102 chrY 25549011 25549108 -25964476 + MIR SINE MIR 6 99 -163 1702 122 214 25 chrY 25549108 25549401 -25964183 + MSTA LTR MaLR 1 377 -51 1898 142 29 0 chrY 25549401 25549635 -25963949 - AluSg SINE Alu 0 363 116 261 0 0 0 chrY 25549635 25549664 -25963920 + (TG)n Simple_repeat Simple_repeat 2 30 0 1898 142 29 0 chrY 25549664 25549784 -25963800 - AluSg SINE Alu -247 116 1 1702 122 214 25 chrY 25549784 25549848 -25963736 + MSTA LTR MaLR 377 428 0 231 258 131 102 chrY 25549848 25549994 -25963590 + MIR SINE MIR 99 256 -6 275 250 102 19 chrY 25550264 25550372 -25963212 + L2 LINE L2 3155 3271 -1 271 205 64 0 chrY 25551055 25551133 -25962451 - MIR SINE MIR -78 184 102 422 265 61 20 chrY 25552360 25552507 -25961077 - MIR SINE MIR -64 198 46 3512 171 28 67 chrY 25552514 25552828 -25960756 - LTR39 LTR ERV1 -1 782 457 2081 151 0 0 chrY 25552828 25553127 -25960457 + AluSx SINE Alu 1 299 -13 3512 171 28 67 chrY 25553127 25553429 -25960155 - LTR39 LTR ERV1 -326 457 199 903 50 17 0 chrY 25553429 25553548 -25960036 - L1PA4 LINE L1 -1 6154 6034 3512 171 28 67 chrY 25553548 25553692 -25959892 - LTR39 LTR ERV1 -584 199 51 444 284 57 21 chrY 25554183 25554377 -25959207 - L2 LINE L2 -11 3302 3102 2130 98 0 21 chrY 25554704 25555015 -25958569 + AluSg SINE Alu 1 305 0 256 355 0 11 chrY 25555019 25555112 -25958472 + LTR33 LTR ERVL 66 157 -364 436 250 125 0 chrY 25555207 25555335 -25958249 + LTR33 LTR ERVL 378 521 0 632 272 28 42 chrY 25555635 25555852 -25957732 + MIR SINE MIR 36 249 -13 2087 152 0 0 chrY 25556790 25557099 -25956485 - AluSc SINE Alu 0 309 1 433 327 54 18 chrY 25557145 25557423 -25956161 + L2 LINE L2 2564 2851 -463 576 248 56 110 chrY 25557587 25557869 -25955715 - MLT1H LTR MaLR -167 375 114 2250 90 0 32 chrY 25557869 25558181 -25955403 - AluY SINE Alu -4 307 6 576 248 56 110 chrY 25558181 25558232 -25955352 - MLT1H LTR MaLR -428 114 62 183 129 0 0 chrY 25558696 25558727 -25954857 + (CAA)n Simple_repeat Simple_repeat 2 32 0 241 262 155 0 chrY 25558767 25558851 -25954733 - L1ME4a LINE L1 -21 6100 6004 202 291 0 0 chrY 25560171 25560226 -25953358 + (TG)n Simple_repeat Simple_repeat 2 56 0 606 233 141 5 chrY 25560956 25561240 -25952344 + MLT1I LTR MaLR 35 406 -3 180 111 0 0 chrY 25562154 25562181 -25951403 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2209 116 7 7 chrY 25562201 25562511 -25951073 - AluSg SINE Alu 0 310 1 300 247 14 14 chrY 25562837 25562910 -25950674 + L3 LINE CR1 558 630 -947 2236 136 7 0 chrY 25564173 25564483 -25949101 + AluSx SINE Alu 1 312 0 1270 211 14 39 chrY 25564544 25564824 -25948760 + AluJo SINE Alu 24 296 -16 2114 143 0 0 chrY 25564955 25565256 -25948328 + AluSx SINE Alu 1 301 -11 311 308 163 18 chrY 25565679 25565906 -25947678 - MIR SINE MIR -1 261 2 310 261 30 37 chrY 25565914 25566048 -25947536 + L3 LINE CR1 661 793 -784 1988 132 7 0 chrY 25566115 25566426 -25947158 + AluSg SINE Alu 1 310 0 409 226 105 38 chrY 25566513 25566606 -25946978 - LTR33 LTR ERVL -2 519 434 2045 163 60 24 chrY 25566606 25566755 -25946829 + MSTB1 LTR MaLR 1 143 -289 2217 105 0 3 chrY 25566755 25567049 -25946535 - AluSq SINE Alu -16 297 5 2045 163 60 24 chrY 25567049 25567299 -25946285 + MSTB1 LTR MaLR 143 418 -14 315 0 0 0 chrY 25567299 25567334 -25946250 + (CA)n Simple_repeat Simple_repeat 2 36 0 2045 163 60 24 chrY 25567334 25567350 -25946234 + MSTB1 LTR MaLR 418 432 0 409 226 105 38 chrY 25567350 25567389 -25946195 - LTR33 LTR ERVL -87 434 378 449 314 35 12 chrY 25567473 25567642 -25945942 - LTR33 LTR ERVL -348 173 1 214 355 25 55 chrY 25567653 25567853 -25945731 + L3 LINE CR1 944 1137 -440 189 316 101 54 chrY 25568045 25568213 -25945371 + L3 LINE CR1 1392 1567 -10 273 348 54 0 chrY 25569534 25569646 -25943938 - MER5B DNA MER1_type -60 118 1 1135 230 123 10 chrY 25570586 25570886 -25942698 + MLT1C LTR MaLR 134 467 0 274 326 22 0 chrY 25570890 25570982 -25942602 - MIR SINE MIR -87 175 82 315 340 162 11 chrY 25571162 25571433 -25942151 + L2 LINE L2 2890 3201 -112 828 189 111 18 chrY 25571442 25571685 -25941899 + AluJb SINE Alu 1 309 -3 309 109 0 0 chrY 25572700 25572746 -25940838 + (TG)n Simple_repeat Simple_repeat 1 46 0 206 128 26 0 chrY 25572905 25572944 -25940640 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 940 218 0 29 chrY 25572966 25573140 -25940444 - FAM SINE Alu -3 172 4 5802 111 27 1 chrY 25573216 25574075 -25939509 + L1PA14 LINE L1 5280 6160 -1 2175 112 6 3 chrY 25574210 25574522 -25939062 + AluSq SINE Alu 1 313 0 23 78 0 0 chrY 25574721 25574772 -25938812 + AT_rich Low_complexity Low_complexity 1 51 0 198 257 86 14 chrY 25575025 25575095 -25938489 + L2 LINE L2 3239 3313 0 507 321 94 48 chrY 25575185 25575723 -25937861 + L2 LINE L2 2716 3271 -1 936 322 50 38 chrY 25576848 25577267 -25936317 + MLT1E LTR MaLR 22 445 -148 697 285 104 50 chrY 25577347 25577810 -25935774 + L1ME3A LINE L1 347 834 -5285 251 252 56 56 chrY 25578193 25578336 -25935248 + MLT2E LTR ERVL 480 622 -6 253 271 149 0 chrY 25578483 25578590 -25934994 - L2 LINE L2 -871 2443 2321 356 280 76 74 chrY 25578721 25579231 -25934353 + MER65A LTR ERV1 2 445 0 254 342 8 0 chrY 25579237 25579354 -25934230 - L1M4 LINE L1 -2505 3641 3524 1074 301 73 14 chrY 25579518 25580175 -25933409 + L2 LINE L2 2616 3309 -4 552 228 16 31 chrY 25580175 25580368 -25933216 + L1ME3A LINE L1 3777 3966 -2163 289 286 120 16 chrY 25580365 25580557 -25933027 + L1ME3A LINE L1 4488 4699 -1430 * 872 223 29 38 chrY 25580754 25580992 -25932592 + MLT1D LTR MaLR 1 236 -390 42072 46 23 3 chrY 25580992 25587064 -25926520 + L1PA2 LINE L1 2 6155 0 1063 244 11 15 chrY 25587065 25587327 -25926257 + MLT1D LTR MaLR 235 495 -10 1091 280 117 26 chrY 25587327 25588371 -25925213 + L1ME3A LINE L1 4906 6010 -94 203 286 12 12 chrY 25588627 25588711 -25924873 + (TA)n Simple_repeat Simple_repeat 1 84 0 2290 129 31 47 chrY 25588798 25589179 -25924405 - THE1C LTR MaLR 0 375 1 48 0 0 0 chrY 25590204 25590252 -25923332 + AT_rich Low_complexity Low_complexity 1 48 0 2403 94 0 0 chrY 25590386 25590694 -25922890 - AluY SINE Alu -3 308 1 38 75 0 0 chrY 25590766 25590846 -25922738 + AT_rich Low_complexity Low_complexity 1 80 0 236 170 19 0 chrY 25592211 25592264 -25921320 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 594 135 0 0 chrY 25592303 25592399 -25921185 + L1MA5 LINE L1 6200 6295 -5 184 167 19 19 chrY 25592545 25592599 -25920985 + (TA)n Simple_repeat Simple_repeat 1 54 0 516 257 0 9 chrY 25592878 25592991 -25920593 + L2 LINE L2 3197 3308 -5 468 370 52 34 chrY 25593002 25593552 -25920032 + L2 LINE L2 2710 3270 -2 1877 169 17 0 chrY 25593715 25594017 -25919567 + AluJb SINE Alu 1 307 -5 1034 134 20 25 chrY 25595179 25595380 -25918204 + L1MA5 LINE L1 6101 6300 0 1519 210 51 39 chrY 25595382 25596144 -25917440 + L1M4c LINE L1 1451 2313 -4071 21 36 0 0 chrY 25596271 25596299 -25917285 + AT_rich Low_complexity Low_complexity 1 28 0 188 105 79 0 chrY 25596434 25596472 -25917112 + L2 LINE L2 2665 2705 -609 364 236 109 36 chrY 25596685 25596795 -25916789 - L2 LINE L2 -1 3312 3195 1963 131 0 0 chrY 25596922 25597189 -25916395 - AluSx SINE Alu -45 267 1 277 285 30 75 chrY 25597626 25597733 -25915851 - L2 LINE L2 -5 3308 3213 2326 112 0 0 chrY 25597733 25598046 -25915538 - AluSq SINE Alu 0 313 1 277 285 30 75 chrY 25598046 25598138 -25915446 - L2 LINE L2 -100 3213 3118 1802 119 3 65 chrY 25598533 25598826 -25914758 - AluSx SINE Alu -1 311 37 739 139 0 19 chrY 25598828 25598936 -25914648 - FLAM_C SINE Alu -9 134 29 702 168 0 0 chrY 25598940 25599041 -25914543 + FLAM_C SINE Alu 3 103 -40 952 231 19 0 chrY 25599042 25599148 -25914436 + L1M2 LINE L1 1967 2070 -4779 2123 124 3 22 chrY 25599148 25599463 -25914121 + AluSg SINE Alu 1 309 -1 952 231 19 0 chrY 25599463 25599922 -25913662 + L1M2 LINE L1 2070 2623 -4226 477 155 13 3 chrY 25599930 25600158 -25913426 + AluSq SINE Alu 6 312 -1 200 191 11 79 chrY 25602921 25603010 -25910574 + (CCCTG)n Simple_repeat Simple_repeat 3 85 0 2123 125 0 0 chrY 25603247 25603550 -25910034 - AluSg SINE Alu -7 303 1 380 191 13 4 chrY 25605579 25605669 -25907915 + AluJ/FRAM SINE Alu 223 298 -4 442 251 56 70 chrY 25605669 25605781 -25907803 - L2 LINE L2 -94 3219 3110 1595 199 3 17 chrY 25605781 25606060 -25907524 + AluJo SINE Alu 5 281 -31 441 0 0 0 chrY 25606060 25606109 -25907475 + (CA)n Simple_repeat Simple_repeat 2 50 0 1595 199 3 17 chrY 25606109 25606131 -25907453 + AluJo SINE Alu 281 302 -10 442 251 56 70 chrY 25606131 25606233 -25907351 - L2 LINE L2 -203 3110 3008 1028 261 134 29 chrY 25606315 25606791 -25906793 - MLT1K LTR MaLR -7 581 56 302 348 162 25 chrY 25607287 25607491 -25906093 + MIR SINE MIR 25 256 -6 344 329 181 9 chrY 25607644 25607860 -25905724 + MIR SINE MIR 4 256 -6 268 373 37 8 chrY 25608044 25608178 -25905406 - L2 LINE L2 -6 3266 3129 277 288 51 17 chrY 25608919 25609037 -25904547 + MIR SINE MIR 140 261 -1 28 71 0 0 chrY 25609357 25609413 -25904171 + AT_rich Low_complexity Low_complexity 1 56 0 506 240 147 0 chrY 25609457 25609607 -25903977 + MIR SINE MIR 62 233 -29 420 261 203 0 chrY 25609993 25610146 -25903438 + MIR3 SINE MIR 22 205 -3 38 0 0 20 chrY 25610942 25610976 -25902608 + AT_rich Low_complexity Low_complexity 1 35 -13 2103 122 0 3 chrY 25610976 25611264 -25902320 - AluSx SINE Alu -25 287 1 38 0 0 20 chrY 25611264 25611278 -25902306 + AT_rich Low_complexity Low_complexity 35 48 0 584 126 0 32 chrY 25611278 25611373 -25902211 - AluJ/FRAM SINE Alu 0 312 221 462 301 49 7 chrY 25611375 25611518 -25902066 - MIR SINE MIR -99 163 15 2400 84 0 7 chrY 25611878 25612187 -25901397 - AluY SINE Alu -4 307 1 296 294 0 0 chrY 25612192 25612260 -25901324 - L2 LINE L2 0 3272 3205 2023 148 0 0 chrY 25612409 25612700 -25900884 - AluSx SINE Alu -21 291 1 210 71 0 0 chrY 25612782 25612810 -25900774 + (CAT)n Simple_repeat Simple_repeat 2 29 0 728 227 103 5 chrY 25612840 25613025 -25900559 - MIR SINE MIR -29 233 31 2364 64 0 0 chrY 25613320 25613632 -25899952 - AluY SINE Alu 0 312 1 226 281 90 51 chrY 25613888 25614066 -25899518 - L1MEd LINE L1 -5933 186 2 467 273 73 7 chrY 25614070 25614220 -25899364 - MIR SINE MIR -69 193 34 227 217 0 0 chrY 25615572 25615618 -25897966 + T-rich Low_complexity Low_complexity 1 46 0 2365 108 0 0 chrY 25616035 25616341 -25897243 - AluSq SINE Alu -7 306 1 195 203 38 0 chrY 25617581 25617660 -25895924 + (TA)n Simple_repeat Simple_repeat 1 82 0 225 280 47 37 chrY 25618194 25618301 -25895283 + MER113 DNA MER1_type? 15 122 -399 206 190 0 35 chrY 25618377 25618435 -25895149 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 493 215 111 22 chrY 25618619 25618754 -25894830 - MIR3 SINE MIR -45 163 17 217 311 10 19 chrY 25619319 25619422 -25894162 + (CA)n Simple_repeat Simple_repeat 1 102 0 283 263 40 0 chrY 25619854 25619953 -25893631 + GA-rich Low_complexity Low_complexity 1 103 0 252 286 8 40 chrY 25620370 25620496 -25893088 + GA-rich Low_complexity Low_complexity 6 127 0 184 296 28 0 chrY 25620705 25620776 -25892808 + MIR SINE MIR 81 153 -55 286 288 80 44 chrY 25623501 25623727 -25889857 - L2 LINE L2 -27 3245 3012 463 257 40 13 chrY 25624565 25624717 -25888867 - MER103 DNA DNA -1 165 10 457 279 44 0 chrY 25624950 25625086 -25888498 + Charlie8 DNA MER1_type 24 165 -2252 2263 90 7 0 chrY 25625088 25625389 -25888195 + AluY SINE Alu 1 303 -8 11318 186 50 6 chrY 25626544 25629132 -25884452 + HERVK LTR ERVK 2807 5534 -1709 1307 232 68 0 chrY 25629355 25629744 -25883840 + HERVK LTR ERVK 5533 5900 -1343 27 29 0 0 chrY 25629969 25630003 -25883581 + AT_rich Low_complexity Low_complexity 1 34 0 2126 226 77 26 chrY 25630045 25630659 -25882925 - LTR5 LTR ERVK -324 645 1 1998 148 26 50 chrY 25631226 25631610 -25881974 + THE1C LTR MaLR 1 375 0 21 71 0 0 chrY 25632933 25632975 -25880609 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chrY 25633015 25633038 -25880546 + AT_rich Low_complexity Low_complexity 1 23 0 267 31 0 0 chrY 25633608 25633640 -25879944 + (TTG)n Simple_repeat Simple_repeat 2 33 0 279 79 0 0 chrY 25634550 25634588 -25878996 + (TG)n Simple_repeat Simple_repeat 1 38 0 919 104 30 8 chrY 25635549 25635683 -25877901 - AluSq/x SINE Alu -174 139 3 360 0 0 0 chrY 25636010 25636050 -25877534 + (TG)n Simple_repeat Simple_repeat 2 41 0 2094 139 3 0 chrY 25636214 25636515 -25877069 - AluSg SINE Alu -8 302 1 204 185 0 0 chrY 25637673 25637727 -25875857 + (TG)n Simple_repeat Simple_repeat 2 55 0 2215 121 0 0 chrY 25637861 25638151 -25875433 - AluSq SINE Alu -23 290 1 755 212 233 9 chrY 25638627 25638953 -25874631 - Charlie1a DNA MER1_type 0 1455 1057 1152 191 0 14 chrY 25638976 25639196 -25874388 - AluJb SINE Alu -9 303 87 2318 191 174 40 chrY 25639200 25639766 -25873818 - Charlie1a DNA MER1_type -1847 914 222 1803 182 0 3 chrY 25639766 25640063 -25873521 - AluJb SINE Alu -16 296 1 2318 191 174 40 chrY 25640063 25640244 -25873340 - Charlie1a DNA MER1_type -2539 222 67 2221 112 7 0 chrY 25640620 25640923 -25872661 + AluY SINE Alu 1 305 -6 2041 131 13 3 chrY 25641066 25641372 -25872212 - AluSc SINE Alu 0 309 1 1484 255 121 20 chrY 25641676 25642213 -25871371 - MLT1E LTR MaLR 0 593 3 404 222 63 75 chrY 25643033 25643272 -25870312 - L1ME4a LINE L1 -4 6117 5882 2307 102 0 3 chrY 25643275 25643578 -25870006 - AluY SINE Alu -9 302 1 234 319 71 6 chrY 25643744 25643913 -25869671 + L1P LINE L1 4311 4490 -1656 347 222 0 0 chrY 25644005 25644068 -25869516 + AluS SINE Alu 2 64 -239 1059 179 0 6 chrY 25644068 25644247 -25869337 + AluJb SINE Alu 132 309 -3 308 138 46 18 chrY 25644289 25644398 -25869186 + (TA)n Simple_repeat Simple_repeat 1 112 0 839 112 0 0 chrY 25644806 25644913 -25868671 + FLAM_C SINE Alu 1 107 -36 186 43 0 0 chrY 25644913 25644936 -25868648 + (TC)n Simple_repeat Simple_repeat 1 23 0 195 114 0 0 chrY 25644937 25644972 -25868612 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 219 69 0 0 chrY 25645199 25645228 -25868356 + (CATA)n Simple_repeat Simple_repeat 4 32 0 250 255 75 19 chrY 25645450 25645556 -25868028 + L2 LINE L2 1903 2014 -1300 232 318 26 69 chrY 25645556 25645745 -25867839 + L1MC/D LINE L1 5739 5919 -1889 2190 106 3 0 chrY 25646474 25646787 -25866797 - AluSq SINE Alu 0 314 1 3340 99 32 8 chrY 25646851 25647324 -25866260 - LTR15 LTR ERV1 -9 484 1 180 301 133 0 chrY 25647906 25648019 -25865565 - MIR SINE MIR -49 213 86 255 61 0 0 chrY 25648132 25648165 -25865419 + (T)n Simple_repeat Simple_repeat 1 33 0 266 235 15 0 chrY 25649025 25649093 -25864491 - HAL1 LINE L1 -196 2311 2243 21 0 0 0 chrY 25649253 25649274 -25864310 + AT_rich Low_complexity Low_complexity 1 21 0 370 304 132 21 chrY 25649303 25649546 -25864038 - HAL1 LINE L1 -604 1903 1634 770 233 9 51 chrY 25649558 25649773 -25863811 + MIR SINE MIR 28 233 -29 907 239 102 33 chrY 25649802 25650195 -25863389 - HAL1 LINE L1 -877 1630 1211 449 256 120 74 chrY 25650312 25650813 -25862771 - MLT1F LTR MaLR 0 542 19 270 253 94 20 chrY 25650831 25651033 -25862551 - HAL1 LINE L1 -1437 1070 854 2134 125 20 0 chrY 25651060 25651356 -25862228 - AluSp SINE Alu -11 302 1 226 273 101 50 chrY 25651375 25651423 -25862161 - HAL1 LINE L1 -1660 847 803 1572 182 7 52 chrY 25651423 25651763 -25861821 + AluJb SINE Alu 3 312 0 226 273 101 50 chrY 25651763 25651813 -25861771 - HAL1 LINE L1 -1704 803 744 383 306 67 54 chrY 25652029 25652343 -25861241 - HAL1 LINE L1 -2167 340 23 1025 185 42 28 chrY 25652704 25652920 -25860664 + MER20 DNA MER1_type 1 219 0 38022 50 2 1 chrY 25653398 25658839 -25854745 - L1PA4 LINE L1 0 6155 707 7503 34 2 0 chrY 25659321 25660205 -25853379 - L1PA2 LINE L1 -4 6151 5266 347 250 163 33 chrY 25660233 25660649 -25852935 - L1M3 LINE L1 -476 5645 5189 548 145 22 46 chrY 25660680 25660916 -25852668 + CT-rich Low_complexity Low_complexity 1 230 0 1533 191 7 4 chrY 25661030 25661303 -25852281 - AluJo SINE Alu -38 274 1 742 178 8 0 chrY 25662054 25662183 -25851401 - MER5A DNA MER1_type -58 131 2 2129 126 0 0 chrY 25662519 25662826 -25850758 - AluSx SINE Alu 0 307 1 7576 33 16 6 chrY 25664160 25665230 -25848354 - L1PA3 LINE L1 0 6155 5086 227 263 72 59 chrY 25666117 25666269 -25847315 + MIR SINE MIR 72 225 -37 266 289 141 7 chrY 25667185 25667327 -25846257 + MIR3 SINE MIR 31 191 -17 226 241 167 28 chrY 25667333 25667441 -25846143 + L2 LINE L2 3188 3310 -3 214 245 38 0 chrY 25667772 25667825 -25845759 + MIR SINE MIR 95 149 -59 198 0 0 0 chrY 25667966 25667988 -25845596 + (T)n Simple_repeat Simple_repeat 1 22 0 1709 166 10 39 chrY 25669021 25669329 -25844255 + AluSx SINE Alu 6 304 -8 979 178 141 0 chrY 25670271 25670462 -25843122 + 7SLRNA srpRNA srpRNA 95 312 -8 217 317 79 0 chrY 25673864 25673965 -25839619 - MIR SINE MIR -70 192 84 186 43 0 0 chrY 25674731 25674754 -25838830 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 251 282 70 14 chrY 25674780 25674851 -25838733 - MIR SINE MIR -177 85 11 378 0 0 0 chrY 25675152 25675194 -25838390 + (CA)n Simple_repeat Simple_repeat 2 43 0 1155 115 6 0 chrY 25676287 25676443 -25837141 + AluSq SINE Alu 1 157 -156 2009 89 14 38 chrY 25676443 25676735 -25836849 - AluSx SINE Alu -25 287 3 261 0 0 0 chrY 25677870 25677899 -25835685 + (TG)n Simple_repeat Simple_repeat 2 30 0 2222 133 3 0 chrY 25678061 25678363 -25835221 - AluSg SINE Alu -7 303 1 393 272 185 44 chrY 25679172 25679470 -25834114 - L1ME4a LINE L1 -4 6117 5778 2379 102 16 3 chrY 25679676 25679981 -25833603 - AluSx SINE Alu -3 309 1 752 216 143 65 chrY 25680456 25680826 -25832758 - Charlie1a DNA MER1_type 0 1455 1057 1305 167 0 10 chrY 25680857 25681061 -25832523 - AluJb SINE Alu -24 288 87 1965 188 141 91 chrY 25681065 25681634 -25831950 - Charlie1a DNA MER1_type -1847 914 375 1859 165 0 14 chrY 25681634 25681925 -25831659 - AluJb SINE Alu -13 299 13 1965 188 141 91 chrY 25681925 25681983 -25831601 - Charlie1a DNA MER1_type -2386 375 321 1965 162 0 3 chrY 25681983 25682280 -25831304 - AluSx SINE Alu -12 300 5 1965 188 141 91 chrY 25682280 25682458 -25831126 - Charlie1a DNA MER1_type -2440 321 67 22 35 0 0 chrY 25682560 25682589 -25830995 + AT_rich Low_complexity Low_complexity 1 29 0 2459 96 3 3 chrY 25682840 25683152 -25830432 + AluSp SINE Alu 1 312 -1 2146 115 6 16 chrY 25683303 25683615 -25829969 - AluSc SINE Alu 0 309 1 1257 244 136 25 chrY 25683990 25684518 -25829066 - MLT1E LTR MaLR -4 589 3 485 221 141 61 chrY 25685341 25685554 -25828030 - L1ME4a LINE L1 -1 6120 5891 2149 125 0 0 chrY 25685557 25685846 -25827738 + AluSg SINE Alu 1 289 -21 210 287 0 0 chrY 25685855 25685942 -25827642 + (CA)n Simple_repeat Simple_repeat 2 88 0 2656 94 15 82 chrY 25687104 25687580 -25826004 + MLT2A1 LTR ERVL 1 444 0 418 264 27 0 chrY 25687619 25687729 -25825855 + MER63 DNA MER1_type 3 741 -95 292 222 16 0 chrY 25687732 25687795 -25825789 + MER63 DNA MER1_type 988 1051 -9 209 294 59 0 chrY 25689763 25689831 -25823753 + MIR SINE MIR 74 145 -63 745 184 0 29 chrY 25690343 25690479 -25823105 + FLAM_C SINE Alu 2 133 0 229 321 64 0 chrY 25691096 25691205 -25822379 + L2 LINE L2 3156 3271 -1 268 222 111 0 chrY 25695175 25695256 -25818328 - MER5A DNA MER1_type -53 136 47 269 309 56 16 chrY 25695578 25695704 -25817880 - L2 LINE L2 -223 3049 2919 260 330 9 27 chrY 25697207 25697319 -25816265 - MIR SINE MIR -122 140 31 1508 114 37 33 chrY 25697368 25697613 -25815971 + AluJb SINE Alu 35 280 -32 227 232 29 29 chrY 25697695 25697764 -25815820 + MIR SINE MIR 85 153 -55 251 340 48 15 chrY 25699609 25699792 -25813792 + MIR3 SINE MIR 5 192 -57 315 71 0 0 chrY 25702341 25702383 -25811201 + (CA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chrY 25703291 25703311 -25810273 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chrY 25703874 25703896 -25809688 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chrY 25704450 25704479 -25809105 + AT_rich Low_complexity Low_complexity 1 29 0 277 316 169 0 chrY 25707642 25707778 -25805806 - MIR SINE MIR -6 256 98 1956 113 7 31 chrY 25707830 25708150 -25805434 - AluSx SINE Alu 0 312 5 226 211 39 0 chrY 25709537 25709589 -25803995 - MIR SINE MIR -59 149 96 225 244 49 37 chrY 25709961 25710043 -25803541 - LTR48 LTR ERV1 -646 141 59 204 350 10 0 chrY 25710080 25710177 -25803407 - MIR SINE MIR -80 128 31 235 316 13 0 chrY 25711175 25711254 -25802330 - MIR SINE MIR -111 151 72 187 280 40 40 chrY 25711703 25711778 -25801806 - MIR3 SINE MIR -133 75 1 2212 110 0 0 chrY 25713954 25714266 -25799318 + AluSx SINE Alu 1 312 0 873 188 7 0 chrY 25714602 25714756 -25798828 + MER5A DNA MER1_type 2 156 -33 1583 194 4 4 chrY 25715501 25715774 -25797810 + AluJo SINE Alu 2 274 -38 321 150 0 38 chrY 25715888 25715968 -25797616 + (GAAA)n Simple_repeat Simple_repeat 1 77 0 576 169 17 28 chrY 25715974 25716151 -25797433 + GA-rich Low_complexity Low_complexity 3 177 0 333 263 131 36 chrY 25716177 25716640 -25796944 + L1MB7 LINE L1 5189 5703 -418 2917 13 0 0 chrY 25716640 25716951 -25796633 + AluYa5 SINE Alu 1 311 0 255 267 35 12 chrY 25716986 25717072 -25796512 + L1MB7 LINE L1 5798 5885 -236 898 261 55 20 chrY 25717713 25718058 -25795526 - L1MC4a LINE L1 -1761 6047 5691 488 199 7 71 chrY 25718557 25718698 -25794886 - FLAM_C SINE Alu 0 133 2 2119 148 0 0 chrY 25719301 25719599 -25793985 + AluSx SINE Alu 1 298 -14 330 310 93 39 chrY 25719680 25719809 -25793775 - L2 LINE L2 -15 3257 3122 259 259 47 0 chrY 25720007 25720092 -25793492 - MIR SINE MIR -114 148 60 224 255 0 0 chrY 25720298 25720349 -25793235 + L2 LINE L2 2237 2287 -1027 223 286 124 19 chrY 25720349 25720454 -25793130 + L2 LINE L2 3180 3295 -18 216 135 0 0 chrY 25720616 25720653 -25792931 + (GA)n Simple_repeat Simple_repeat 2 38 0 386 316 116 39 chrY 25720660 25721426 -25792158 - L1MEd LINE L1 -3193 2936 2112 599 269 83 111 chrY 25721428 25721692 -25791892 - L1MEd LINE L1 -4906 1213 943 1369 163 39 102 chrY 25721692 25722024 -25791560 - AluJb SINE Alu -1 311 1 599 269 83 111 chrY 25722024 25722419 -25791165 - L1MEd LINE L1 -5176 943 561 216 0 0 0 chrY 25722838 25722862 -25790722 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 484 196 135 74 chrY 25722998 25723162 -25790422 + MIR SINE MIR 30 198 -64 21 36 0 0 chrY 25723196 25723224 -25790360 + AT_rich Low_complexity Low_complexity 1 28 0 2230 73 0 7 chrY 25723983 25724269 -25789315 - AluY SINE Alu 0 311 28 1470 164 17 21 chrY 25726544 25726831 -25786753 + L1MB7 LINE L1 5881 6166 -18 1936 155 3 7 chrY 25727667 25727970 -25785614 - AluSx SINE Alu -10 302 1 21 0 0 0 chrY 25729354 25729375 -25784209 + AT_rich Low_complexity Low_complexity 1 21 0 1515 211 3 3 chrY 25729387 25729676 -25783908 + AluJb SINE Alu 1 289 -23 300 253 69 23 chrY 25730487 25730574 -25783010 + L1MC4 LINE L1 6613 6703 -1339 645 189 196 0 chrY 25730617 25730760 -25782824 + MER5A DNA MER1_type 1 171 -18 808 161 0 0 chrY 25730781 25730905 -25782679 + FLAM_C SINE Alu 3 126 -17 21 36 0 0 chrY 25730905 25730933 -25782651 + AT_rich Low_complexity Low_complexity 1 28 0 333 338 93 34 chrY 25731642 25731879 -25781705 + L1MEd LINE L1 655 905 -5300 282 274 27 7 chrY 25731909 25732055 -25781529 + L1MEd LINE L1 937 1085 -5133 320 294 125 31 chrY 25732057 25732217 -25781367 + L1MEd LINE L1 1123 1297 -4908 366 357 157 0 chrY 25732251 25732436 -25781148 + L1MEd LINE L1 1527 1740 -4656 197 303 138 28 chrY 25732608 25732717 -25780867 - L3b LINE CR1 -11 1572 1452 620 301 58 58 chrY 25732726 25733085 -25780499 - L3 LINE CR1 -177 1400 1042 2136 141 0 0 chrY 25733677 25733983 -25779601 - AluSq SINE Alu -7 306 1 339 303 46 51 chrY 25734518 25734693 -25778891 - L1ME3A LINE L1 -10 6160 5987 555 235 0 0 chrY 25734796 25734915 -25778669 - MER106A DNA MER1_type -117 119 1 762 240 144 7 chrY 25734928 25735279 -25778305 - L1MC4 LINE L1 -373 5797 5542 21 36 0 0 chrY 25735439 25735467 -25778117 + AT_rich Low_complexity Low_complexity 1 28 0 806 183 0 65 chrY 25735881 25736050 -25777534 - AluJb SINE Alu -9 303 146 1810 161 0 11 chrY 25736669 25736984 -25776600 + AluSx SINE Alu 1 312 0 255 314 88 31 chrY 25737503 25737662 -25775922 + MIR SINE MIR 68 235 -27 235 294 71 32 chrY 25738045 25738171 -25775413 - MIR SINE MIR -25 237 107 1587 208 0 10 chrY 25738517 25738806 -25774778 + AluJo SINE Alu 1 286 -26 1990 158 0 7 chrY 25739356 25739660 -25773924 - AluSx SINE Alu -10 302 1 295 298 61 0 chrY 25739690 25739821 -25773763 + L1ME LINE L1 5558 5696 -425 695 171 34 0 chrY 25740193 25740310 -25773274 + FRAM SINE Alu 31 151 -25 1488 139 112 0 chrY 25741326 25741441 -25772143 + AluJo SINE Alu 1 102 -210 319 21 42 0 chrY 25741441 25741489 -25772095 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 1488 139 112 0 chrY 25741489 25741640 -25771944 + AluJo SINE Alu 102 297 -15 843 241 129 59 chrY 25741944 25742285 -25771299 + MLT1A1 LTR MaLR 1 365 0 1976 116 4 0 chrY 25742698 25742966 -25770618 - AluSx SINE Alu -11 301 33 7317 109 2 0 chrY 25742967 25744042 -25769542 - L1P LINE L1 -5069 1077 1 1336 285 18 37 chrY 25744046 25744614 -25768970 + LTR25-int LTR ERV1 865 1421 -5575 369 0 0 0 chrY 25744634 25744675 -25768909 + (TG)n Simple_repeat Simple_repeat 2 42 0 323 297 11 0 chrY 25744705 25744796 -25768788 + L1MC4 LINE L1 6614 6705 -1337 314 311 11 0 chrY 25744721 25744811 -25768773 - L1MC4 LINE L1 -1337 6705 6615 * 269 296 8 0 chrY 25744835 25744967 -25768617 + (TA)n Simple_repeat Simple_repeat 1 133 0 200 240 40 0 chrY 25745022 25745072 -25768512 + (CATA)n Simple_repeat Simple_repeat 3 54 0 230 178 0 0 chrY 25745073 25745118 -25768466 + L1MC4 LINE L1 6658 6702 -1340 210 71 0 0 chrY 25745121 25745149 -25768435 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 15749 214 67 29 chrY 25745219 25749389 -25764195 + HERVK3 LTR ERVK 2913 7241 -2 1891 153 60 49 chrY 25749391 25749823 -25763761 + LTR3b LTR ERVK 1 437 0 854 225 0 0 chrY 25749872 25750063 -25763521 + AluSg/x SINE Alu 121 311 -1 306 202 298 0 chrY 25750169 25750263 -25763321 + L1MC3 LINE L1 5254 5375 -2410 1365 204 7 26 chrY 25750630 25750934 -25762650 + AluSx SINE Alu 1 298 -14 248 51 0 26 chrY 25751645 25751684 -25761900 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 6815 39 8 1 chrY 25751686 25753252 -25760332 - L1PA3 LINE L1 -27 6128 4551 1246 249 67 48 chrY 25753373 25753940 -25759644 + L1MC3 LINE L1 5386 5963 -1822 289 206 93 10 chrY 25754203 25754300 -25759284 - L1MB3 LINE L1 -11 6172 6068 * 588 167 130 57 chrY 25754294 25754366 -25759218 - L1MB3 LINE L1 -615 5559 5494 216 0 0 0 chrY 25754366 25754390 -25759194 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 588 167 130 57 chrY 25754390 25754509 -25759075 - L1MB3 LINE L1 -680 5494 5354 510 249 12 12 chrY 25754488 25754661 -25758923 + L1M4 LINE L1 5073 5245 -901 * 1033 190 23 9 chrY 25754669 25754890 -25758694 + MER50 LTR ERV1 511 734 0 1983 226 87 23 chrY 25755061 25755766 -25757818 - L1MB5 LINE L1 -10 6164 5415 6792 40 0 6 chrY 25756838 25758048 -25755536 + L1PA3 LINE L1 4923 6128 -27 248 51 0 26 chrY 25758050 25758089 -25755495 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 1365 204 7 26 chrY 25758801 25759105 -25754479 - AluSx SINE Alu -14 298 1 306 202 298 0 chrY 25759472 25759566 -25754018 - L1MB5 LINE L1 -2410 5375 5254 854 225 0 0 chrY 25759672 25759863 -25753721 - AluSg/x SINE Alu -1 309 119 1891 153 60 49 chrY 25759912 25760344 -25753240 - LTR3b LTR ERVK 0 437 1 15758 214 67 29 chrY 25760346 25764516 -25749068 - HERVK3 LTR ERVK -2 7241 2913 210 71 0 0 chrY 25764586 25764614 -25748970 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 230 178 0 0 chrY 25764617 25764662 -25748922 - L1MC4 LINE L1 -1340 6702 6658 200 240 40 0 chrY 25764663 25764713 -25748871 + (TATG)n Simple_repeat Simple_repeat 3 54 0 269 296 8 0 chrY 25764768 25764900 -25748684 + (TA)n Simple_repeat Simple_repeat 1 133 0 314 311 11 0 chrY 25764924 25765014 -25748570 + L1MC4 LINE L1 6615 6705 -1337 * 323 297 11 0 chrY 25764939 25765030 -25748554 - L1MC4 LINE L1 -1337 6705 6614 21 0 0 31 chrY 25765046 25765058 -25748526 + AT_rich Low_complexity Low_complexity 1 12 -19 387 0 0 0 chrY 25765058 25765101 -25748483 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 31 chrY 25765101 25765120 -25748464 + AT_rich Low_complexity Low_complexity 12 31 0 1336 285 18 37 chrY 25765123 25765691 -25747893 - LTR25-int LTR ERV1 -5575 1421 865 36874 76 18 2 chrY 25765695 25770933 -25742651 + L1PA4 LINE L1 1 5354 -801 2780 22 0 0 chrY 25770933 25771244 -25742340 - AluYa5 SINE Alu 0 311 1 36874 76 18 2 chrY 25771244 25772059 -25741525 + L1PA4 LINE L1 5354 6155 0 3667 214 6 12 chrY 25772058 25773033 -25740551 - L1P LINE L1 -3850 2296 1267 * 742 169 0 0 chrY 25773050 25773168 -25740416 - AluSc SINE Alu -25 284 167 2330 318 18 29 chrY 25773223 25774108 -25739476 + MER52A LTR ERV1 923 1755 0 537 264 0 0 chrY 25774118 25774247 -25739337 + MER21B LTR ERV1 248 376 -487 27 0 0 0 chrY 25774714 25774741 -25738843 + AT_rich Low_complexity Low_complexity 1 27 0 1704 185 3 7 chrY 25774832 25775129 -25738455 + AluY SINE Alu 3 298 -13 1865 182 0 0 chrY 25776833 25777129 -25736455 - AluSg SINE Alu -14 296 1 1265 273 118 6 chrY 25777653 25778456 -25735128 - L1M4c LINE L1 -4182 2202 1312 297 241 139 75 chrY 25778469 25778514 -25735070 - L1M4c LINE L1 -5135 1249 1208 240 35 0 0 chrY 25778514 25778543 -25735041 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 297 241 139 75 chrY 25778543 25778640 -25734944 - L1M4c LINE L1 -5176 1208 1090 1780 175 10 3 chrY 25778640 25778931 -25734653 - AluSc SINE Alu -16 293 1 297 241 139 75 chrY 25778931 25778974 -25734610 - L1M4c LINE L1 -5294 1090 1051 371 153 53 0 chrY 25778974 25779105 -25734479 + (TA)n Simple_repeat Simple_repeat 1 138 0 279 0 0 0 chrY 25779176 25779207 -25734377 + (GA)n Simple_repeat Simple_repeat 2 32 0 1198 292 95 45 chrY 25779268 25779459 -25734125 - L1M4c LINE L1 -5340 1044 864 2386 53 23 3 chrY 25779459 25779761 -25733823 - AluY SINE Alu -3 308 1 1198 292 95 45 chrY 25779761 25780518 -25733066 - L1M4c LINE L1 -5520 864 49 472 299 113 72 chrY 25780575 25781060 -25732524 - L1M4c LINE L1 -3890 2494 1990 368 353 59 5 chrY 25782117 25782304 -25731280 - L2 LINE L2 -352 2962 2766 749 203 62 5 chrY 25783354 25783546 -25730038 - MLT2A1 LTR ERVL -241 203 1 2013 166 29 2 chrY 25783546 25783955 -25729629 - HERVL-A1 LTR ERVL 0 5654 5235 785 179 0 6 chrY 25783972 25784140 -25729444 + CT-rich Low_complexity Low_complexity 2 168 0 366 114 0 0 chrY 25784155 25784225 -25729359 + (GCTG)n Simple_repeat Simple_repeat 2 71 0 20021 164 16 3 chrY 25784228 25788593 -25724991 - HERVL-A1 LTR ERVL -429 5225 714 2324 282 10 2 chrY 25788593 25789188 -25724396 + MER52A LTR ERV1 1156 1755 0 331 266 108 29 chrY 25789529 25789668 -25723916 - MER20 DNA MER1_type -45 174 25 1652 135 24 64 chrY 25789738 25790063 -25723521 + AluSq SINE Alu 1 313 0 1062 256 98 4 chrY 25790353 25790619 -25722965 - AluSx SINE Alu -11 301 11 2192 89 3 3 chrY 25791868 25792171 -25721413 + AluY SINE Alu 1 303 -8 30 0 0 0 chrY 25792446 25792476 -25721108 + AT_rich Low_complexity Low_complexity 1 30 0 316 327 117 19 chrY 25792669 25792874 -25720710 - L1MC4a LINE L1 -1860 5948 5724 26 30 0 0 chrY 25793666 25793699 -25719885 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chrY 25793930 25793964 -25719620 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chrY 25795872 25795903 -25717681 + AT_rich Low_complexity Low_complexity 1 31 0 560 189 0 0 chrY 25796088 25796183 -25717401 + AluJb SINE Alu 87 181 -131 356 216 22 7 chrY 25796416 25796555 -25717029 + (TA)n Simple_repeat Simple_repeat 1 141 0 616 297 6 28 chrY 25796568 25796750 -25716834 + AluJb SINE Alu 2 179 -133 243 111 0 0 chrY 25797341 25797377 -25716207 - Charlie3 DNA MER1_type -26 2684 2649 186 71 0 0 chrY 25797394 25797422 -25716162 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 26 30 0 0 chrY 25797430 25797463 -25716121 + AT_rich Low_complexity Low_complexity 1 33 0 1973 118 3 30 chrY 25798315 25798620 -25714964 - AluY SINE Alu -14 297 1 1211 195 0 13 chrY 25798650 25798886 -25714698 + AluSq SINE Alu 81 313 0 773 270 13 80 chrY 25800174 25800485 -25713099 + AluJo SINE Alu 6 295 -17 1024 228 120 30 chrY 25800720 25801054 -25712530 - THE1B LTR MaLR 0 364 1 2910 205 2 4 chrY 25801054 25801611 -25711973 - THE1B-int LTR MaLR 0 1580 1025 27 0 0 0 chrY 25802743 25802770 -25710814 + AT_rich Low_complexity Low_complexity 1 27 0 1051 247 98 11 chrY 25804067 25804342 -25709242 + AluSx SINE Alu 2 300 -2 185 0 0 39 chrY 25804491 25804517 -25709067 + (TTTAA)n Simple_repeat Simple_repeat 1 25 0 686 207 0 0 chrY 25804518 25804653 -25708931 - L1PA10 LINE L1 -12 6156 6022 1068 227 7 20 chrY 25804669 25804969 -25708615 - L1PA10 LINE L1 -390 5778 5483 308 250 10 21 chrY 25805073 25805169 -25708415 + MER20 DNA MER1_type 101 195 -24 3064 271 84 37 chrY 25805464 25806762 -25706822 - MER52A LTR ERV1 0 1755 645 755 196 7 7 chrY 25806762 25806915 -25706669 + MLT2A1 LTR ERVL 1 153 -291 8798 197 28 5 chrY 25806916 25808698 -25704886 + HERVL-A1 LTR ERVL 1378 3200 -2454 852 182 0 0 chrY 25808696 25808850 -25704734 + HERVL-A1 LTR ERVL 4503 4656 -998 * 2117 170 21 3 chrY 25808838 25809227 -25704357 + HERVL-A1 LTR ERVL 3201 3596 -2058 * 10368 156 8 22 chrY 25809221 25811092 -25702492 + HERVL-A1 LTR ERVL 3810 5654 0 1366 199 85 16 chrY 25811092 25811469 -25702115 + MLT2A1 LTR ERVL 1 403 -41 238 250 0 0 chrY 25811469 25811517 -25702067 + (CA)n Simple_repeat Simple_repeat 1 48 0 38936 67 2 11 chrY 25811571 25817778 -25695806 - L1PA4 LINE L1 -3 6152 3 33803 88 6 6 chrY 25817777 25822739 -25690845 - L1P LINE L1 -1141 5005 44 * 216 0 0 0 chrY 25822923 25822947 -25690637 + (A)n Simple_repeat Simple_repeat 1 24 0 192 152 0 0 chrY 25823222 25823255 -25690329 + (TAA)n Simple_repeat Simple_repeat 1 33 0 269 246 0 0 chrY 25824592 25824649 -25688935 - MER20 DNA MER1_type -73 146 90 323 284 55 47 chrY 25824695 25824822 -25688762 + L2 LINE L2 2766 2893 -421 312 355 129 44 chrY 25825561 25825924 -25687660 + L1M4 LINE L1 394 787 -5755 543 295 172 15 chrY 25826077 25826920 -25686664 + L1M4 LINE L1 1016 1990 -4656 1885 243 140 118 chrY 25827424 25827916 -25685668 + L1M4c LINE L1 23 502 -5882 318 50 0 0 chrY 25827916 25827956 -25685628 + (CA)n Simple_repeat Simple_repeat 1 40 0 1885 243 140 118 chrY 25827956 25829573 -25684011 + L1M4c LINE L1 502 2180 -4204 1818 149 3 27 chrY 25830001 25830327 -25683257 + AluY SINE Alu 1 319 0 343 167 76 0 chrY 25831597 25831663 -25681921 + LTR25 LTR ERV1 471 541 -253 * 1312 255 45 0 chrY 25831659 25832016 -25681568 + LTR25 LTR ERV1 422 794 0 1353 219 73 67 chrY 25832182 25832812 -25680772 + L1M4c LINE L1 1214 1951 -4433 2008 129 0 0 chrY 25832812 25833126 -25680458 + AluY SINE Alu 1 314 0 1353 219 73 67 chrY 25833126 25833403 -25680181 + L1M4c LINE L1 1951 2225 -4159 576 275 8 0 chrY 25836241 25836372 -25677212 - MER21B LTR ERV1 -485 378 247 1516 350 6 0 chrY 25836381 25836856 -25676728 - MER52A LTR ERV1 0 1755 1278 1794 270 22 54 chrY 25836867 25837593 -25675991 - LTR25-int LTR ERV1 -4448 2548 1846 241 139 0 0 chrY 25837756 25837792 -25675792 + MER61E LTR ERV1 120 155 -414 891 253 100 93 chrY 25837800 25838338 -25675246 + LTR25 LTR ERV1 253 794 0 1421 186 21 24 chrY 25838406 25838697 -25674887 + AluY SINE Alu 1 290 -21 6169 279 44 49 chrY 25838800 25841513 -25672071 + LTR25-int LTR ERV1 90 3052 -4226 2126 238 66 79 chrY 25841533 25842034 -25671550 - LTR25 LTR ERV1 0 794 305 216 0 0 0 chrY 25842034 25842058 -25671526 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2126 238 66 79 chrY 25842058 25842358 -25671226 - LTR25 LTR ERV1 -489 305 3 5788 264 65 62 chrY 25842360 25845323 -25668261 - HUERS-P3b LTR ERV1 0 6996 2352 1571 188 35 3 chrY 25845323 25845610 -25667974 + AluSc SINE Alu 2 297 -12 5788 264 65 62 chrY 25845610 25846750 -25666834 - HUERS-P3b LTR ERV1 -4644 2352 1217 2438 234 16 110 chrY 25846838 25847714 -25665870 - LTR25 LTR ERV1 0 794 1 5654 284 54 43 chrY 25847714 25847781 -25665803 - LTR25-int LTR ERV1 -4217 2779 2714 387 0 0 0 chrY 25847781 25847824 -25665760 + (TTG)n Simple_repeat Simple_repeat 2 44 0 5654 284 54 43 chrY 25847824 25850716 -25662868 - LTR25-int LTR ERV1 -4282 2714 279 2486 233 30 91 chrY 25850866 25851712 -25661872 - LTR25 LTR ERV1 0 794 1 3252 288 12 22 chrY 25851713 25852648 -25660936 + HUERS-P3 LTR ERV1 2690 3614 -5305 365 213 38 0 chrY 25852653 25852733 -25660851 + HUERS-P3 LTR ERV1 5498 5580 -683 3667 195 25 45 chrY 25852733 25853735 -25659849 - MER11C LTR ERVK 0 1071 1 1787 266 29 19 chrY 25853740 25854319 -25659265 + HUERS-P3 LTR ERV1 3409 3993 -1224 704 303 36 18 chrY 25854322 25854584 -25659000 + HUERS-P3 LTR ERV1 4918 8896 -23 323 236 0 0 chrY 25854705 25854777 -25658807 + LTR25 LTR ERV1 222 293 -501 1229 276 92 12 chrY 25854804 25855307 -25658277 + LTR25 LTR ERV1 250 792 -2 3486 320 37 19 chrY 25855325 25856660 -25656924 - HUERS-P3 LTR ERV1 -5866 3053 1695 267 231 0 0 chrY 25856751 25856816 -25656768 + LTR25 LTR ERV1 220 284 -510 515 295 74 23 chrY 25856853 25856974 -25656610 + LTR25 LTR ERV1 247 360 -434 1515 22 0 0 chrY 25856974 25857153 -25656431 + (TTC)n Simple_repeat Simple_repeat 2 180 0 515 295 74 23 chrY 25857153 25857248 -25656336 + LTR25 LTR ERV1 360 474 -320 228 263 0 13 chrY 25857607 25857683 -25655901 - LTR25 LTR ERV1 -508 286 212 1309 328 30 24 chrY 25857766 25858401 -25655183 + LTR25-int LTR ERV1 1695 2333 -6586 2291 269 35 39 chrY 25858445 25859804 -25653780 + LTR25-int LTR ERV1 24 1416 -5580 282 160 0 0 chrY 25859817 25859867 -25653717 + (TA)n Simple_repeat Simple_repeat 1 50 0 238 187 110 55 chrY 25859869 25859960 -25653624 - L1MC4 LINE L1 -1333 6709 6614 226 153 34 34 chrY 25859947 25860006 -25653578 - L1MCa LINE L1 -4362 2064 2006 * 219 318 0 0 chrY 25860006 25860069 -25653515 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 244 185 37 0 chrY 25860069 25860123 -25653461 + L1MC4 LINE L1 6647 6702 -1340 236 214 0 102 chrY 25860240 25860338 -25653246 + L1MC4 LINE L1 6615 6702 -1340 303 294 16 16 chrY 25860339 25860465 -25653119 + (TA)n Simple_repeat Simple_repeat 2 127 0 234 222 62 49 chrY 25860466 25860547 -25653037 + L1MC4 LINE L1 6619 6700 -1342 17139 217 52 37 chrY 25860638 25864593 -25648991 + HERVK3 LTR ERVK 2913 6984 -259 297 45 0 0 chrY 25864593 25864637 -25648947 - L1PA2 LINE L1 0 6155 6112 17139 217 52 37 chrY 25864637 25864901 -25648683 + HERVK3 LTR ERVK 6984 7242 -1 2490 152 5 16 chrY 25864901 25865335 -25648249 + LTR3 LTR ERVK 1 429 0 841 193 5 66 chrY 25865338 25865551 -25648033 + AluSg/x SINE Alu 113 312 0 1441 194 19 13 chrY 25866087 25866396 -25647188 + AluSx SINE Alu 1 311 -1 1397 273 58 37 chrY 25867184 25867849 -25645735 + L1MC3 LINE L1 5372 6051 -308 336 186 34 93 chrY 25868027 25868145 -25645439 - L1MB3 LINE L1 -12 6171 6061 * 559 246 60 27 chrY 25868128 25868311 -25645273 - L1M4 LINE L1 -625 5559 5371 525 251 12 12 chrY 25868323 25868486 -25645098 + L1M4 LINE L1 5083 5245 -901 1036 201 32 9 chrY 25868494 25868713 -25644871 + MER50 LTR ERV1 511 734 0 1942 240 44 15 chrY 25868898 25869494 -25644090 - L1MB5 LINE L1 -20 6154 5542 406 282 10 30 chrY 25869777 25870081 -25643503 + (CCCTAA)n Simple_repeat Simple_repeat 1 297 0 226 290 0 51 chrY 25870114 25870290 -25643294 + (CCCTAA)n Simple_repeat Simple_repeat 1 167 0 286 200 0 20 chrY 25870325 25870425 -25643159 + (CCCTAA)n Simple_repeat Simple_repeat 5 102 0 361 302 6 22 chrY 25870457 25870639 -25642945 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 181 177 0 32 chrY 25870681 25870743 -25642841 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 236 280 0 53 chrY 25870839 25871028 -25642556 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 381 240 0 49 chrY 25871062 25871245 -25642339 + (CCCTAA)n Simple_repeat Simple_repeat 2 175 0 226 223 0 33 chrY 25871258 25871442 -25642142 + (CCCTAA)n Simple_repeat Simple_repeat 2 179 0 204 224 0 21 chrY 25871495 25871638 -25641946 + (CCCTAA)n Simple_repeat Simple_repeat 5 144 0 244 222 0 16 chrY 25871766 25871892 -25641692 + (CCCTAA)n Simple_repeat Simple_repeat 4 127 0 416 226 11 63 chrY 25871940 25872130 -25641454 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 212 247 25 12 chrY 25872141 25872222 -25641362 + (CCCTAA)n Simple_repeat Simple_repeat 4 85 0 300 188 0 27 chrY 25872235 25872347 -25641237 + (CCCTAA)n Simple_repeat Simple_repeat 1 109 0 410 209 0 62 chrY 25872449 25872626 -25640958 + (CCCTAA)n Simple_repeat Simple_repeat 4 169 0 395 164 8 25 chrY 25872643 25872765 -25640819 + (CCCTAA)n Simple_repeat Simple_repeat 6 125 0 349 277 114 37 chrY 25873222 25873596 -25639988 + L1 LINE L1 3914 4334 -1812 1306 169 15 105 chrY 25873596 25873928 -25639656 - AluY SINE Alu -9 302 1 349 277 114 37 chrY 25873928 25874010 -25639574 + L1 LINE L1 4334 4408 -1738 22 0 0 0 chrY 25874555 25874577 -25639007 + AT_rich Low_complexity Low_complexity 1 22 0 662 221 95 95 chrY 25875059 25875532 -25638052 + AluJb SINE Alu 19 312 0 180 0 0 0 chrY 25875841 25875861 -25637723 + (CAA)n Simple_repeat Simple_repeat 2 21 0 643 274 6 6 chrY 25875866 25876030 -25637554 + FRAM SINE Alu 1 164 -12 1429 293 114 11 chrY 25876068 25876937 -25636647 + L1 LINE L1 4436 5393 -753 236 319 34 17 chrY 25877964 25878083 -25635501 - L2 LINE L2 -507 2807 2687 250 281 126 7 chrY 25879127 25879262 -25634322 - TAR1 Satellite telomeric -200 1911 1761 4474 159 16 11 chrY 25879495 25880317 -25633267 - L1PA14 LINE L1 0 6161 5336 555 51 64 0 chrY 25880316 25880394 -25633190 + L1P LINE L1 5343 5425 -729 * 16489 143 14 4 chrY 25880398 25883875 -25629709 - L1PA7 LINE L1 -74 6395 2883 4467 183 46 7 chrY 25883864 25884545 -25629039 - L1PA7 LINE L1 -5338 1123 403 * 207 0 0 0 chrY 25884545 25884568 -25629016 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4467 183 46 7 chrY 25884568 25884708 -25628876 - L1PA7 LINE L1 -6058 403 270 1201 184 0 0 chrY 25884716 25884917 -25628667 - L1PA7 LINE L1 -6256 205 5 626 254 97 24 chrY 25884966 25885488 -25628096 + L1MC1 LINE L1 5017 5562 -748 267 288 12 25 chrY 25885917 25885997 -25627587 - LTR33 LTR ERVL -368 153 75 947 185 0 97 chrY 25886106 25886344 -25627240 + AluSc SINE Alu 1 215 -94 1274 235 0 20 chrY 25886831 25886959 -25626625 + AluSx SINE Alu 1 130 -182 1447 204 10 16 chrY 25886959 25887273 -25626311 + AluSx SINE Alu 1 312 0 1274 235 0 20 chrY 25887273 25887446 -25626138 + AluSx SINE Alu 130 296 -16 287 286 135 15 chrY 25887769 25887902 -25625682 - MIR SINE MIR -60 202 54 29 0 0 0 chrY 25888860 25888889 -25624695 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrY 25889090 25889112 -25624472 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chrY 25889136 25889176 -25624408 + AT_rich Low_complexity Low_complexity 1 40 0 1950 158 3 0 chrY 25891676 25891973 -25621611 + AluSq SINE Alu 1 298 -15 603 256 0 0 chrY 25892093 25892214 -25621370 + FLAM_A SINE Alu 1 121 -12 280 331 130 27 chrY 25892830 25893014 -25620570 + L3 LINE CR1 195 397 -1180 1324 180 71 4 chrY 25893525 25893780 -25619804 + AluSg1 SINE Alu 30 301 -8 1602 203 7 0 chrY 25893909 25894200 -25619384 + AluSq SINE Alu 1 293 -20 1139 253 42 7 chrY 25894346 25894635 -25618949 - AluJb SINE Alu -3 299 1 500 321 85 59 chrY 25894847 25895152 -25618432 - L2 LINE L2 -19 3253 2941 249 211 96 64 chrY 25897248 25897404 -25616180 + L1MC4 LINE L1 7865 8025 -17 665 201 0 22 chrY 25897449 25897583 -25616001 - FLAM_C SINE Alu 0 133 3 244 272 134 45 chrY 25898044 25898246 -25615338 + L1MC1 LINE L1 5552 5771 -2037 1851 59 0 0 chrY 25898438 25898675 -25614909 - L1PA3 LINE L1 -2444 3702 3466 13683 44 13 9 chrY 25898675 25901116 -25612468 + L1PA3 LINE L1 3709 6152 -3 511 181 213 31 chrY 25901279 25901439 -25612145 - L1MC3 LINE L1 -1504 6281 6093 842 220 211 14 chrY 25901448 25901803 -25611781 - L1M4 LINE L1 -947 5199 4775 2592 153 18 40 chrY 25902373 25902869 -25610715 + LTR22B LTR ERVK 5 489 -3 559 197 20 0 chrY 25902915 25903062 -25610522 + CT-rich Low_complexity Low_complexity 3 152 0 294 214 0 0 chrY 25903063 25903119 -25610465 + T-rich Low_complexity Low_complexity 1 56 0 1324 237 0 31 chrY 25903121 25903442 -25610142 - AluSx SINE Alu -1 311 1 599 256 152 0 chrY 25903534 25903698 -25609886 - MER3 DNA MER1_type -4 205 17 871 278 32 18 chrY 25905444 25905728 -25607856 + AluSx SINE Alu 1 288 -14 1596 196 17 7 chrY 25905830 25906121 -25607463 + AluSx SINE Alu 1 294 -18 1156 220 0 0 chrY 25906208 25906431 -25607153 + L1MC1 LINE L1 6104 6326 -7 203 244 0 0 chrY 25906434 25906475 -25607109 + (CA)n Simple_repeat Simple_repeat 2 42 0 1142 107 6 0 chrY 25907251 25907428 -25606156 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 281 185 15 0 chrY 25907435 25907500 -25606084 + GA-rich Low_complexity Low_complexity 4 69 0 207 281 0 31 chrY 25909321 25909385 -25604199 - L2 LINE L2 -1 3312 3251 827 205 126 82 chrY 25909682 25909975 -25603609 - AluJb SINE Alu -3 309 4 1122 246 111 24 chrY 25912056 25912478 -25601106 - MLT1C LTR MaLR -7 460 2 284 111 19 0 chrY 25912895 25912949 -25600635 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chrY 25913865 25913887 -25599697 + AT_rich Low_complexity Low_complexity 1 22 0 1376 191 66 0 chrY 25914355 25914611 -25598973 - AluSx SINE Alu -28 284 12 195 69 0 0 chrY 25915028 25915057 -25598527 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6747 63 15 10 chrY 25915064 25917795 -25595789 - L1PA4 LINE L1 -11 6144 3278 309 182 0 18 chrY 25917983 25918038 -25595546 + Alu SINE Alu 1 54 -249 18550 21 0 0 chrY 25921581 25924544 -25589040 + L1HS LINE L1 3193 6155 0 266 0 29 0 chrY 25924544 25924578 -25589006 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 226 135 0 0 chrY 25924580 25924617 -25588967 + (A)n Simple_repeat Simple_repeat 1 37 0 1630 181 0 0 chrY 25925385 25925645 -25587939 + AluSg SINE Alu 19 278 -32 420 82 0 0 chrY 25925645 25925706 -25587878 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 7050 162 47 26 chrY 25925707 25927081 -25586503 - L1P3 LINE L1 -4644 1807 377 552 166 103 7 chrY 25927101 25927246 -25586338 - LTR19B-int LTR ERV1 -2260 4736 4578 2758 184 30 85 chrY 25927381 25928039 -25585545 - LTR19B-int LTR ERV1 -7097 622 1 1753 171 49 3 chrY 25928039 25928367 -25585217 - LTR19B LTR ERV1 0 580 238 647 200 0 0 chrY 25928360 25928475 -25585109 - LTR19B LTR ERV1 -465 115 1 * 22 0 0 0 chrY 25929274 25929296 -25584288 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chrY 25929355 25929390 -25584194 + (TA)n Simple_repeat Simple_repeat 2 36 0 1413 165 120 0 chrY 25929526 25929793 -25583791 - AluSc SINE Alu -9 300 2 236 333 9 37 chrY 25929813 25929921 -25583663 + MER5B DNA MER1_type 44 148 -30 22 56 0 0 chrY 25930232 25930268 -25583316 + AT_rich Low_complexity Low_complexity 1 36 0 29 60 0 0 chrY 25930544 25930594 -25582990 + AT_rich Low_complexity Low_complexity 1 50 0 318 293 64 71 chrY 25930726 25931023 -25582561 - MER46C DNA MER2_type -17 321 27 479 43 43 0 chrY 25931432 25931502 -25582082 + L1PA2 LINE L1 6082 6154 -1 183 42 0 0 chrY 25931958 25931982 -25581602 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1176 183 5 0 chrY 25931984 25932181 -25581403 - AluSg/x SINE Alu -35 274 77 21 0 0 0 chrY 25932182 25932203 -25581381 + AT_rich Low_complexity Low_complexity 1 21 0 239 236 167 0 chrY 25932975 25933047 -25580537 - L2 LINE L2 -10 3303 3220 550 255 0 45 chrY 25933752 25933909 -25579675 + FRAM SINE Alu 9 158 -18 232 301 65 65 chrY 25934006 25934159 -25579425 + MIR SINE MIR 39 191 -17 782 190 44 6 chrY 25934631 25934789 -25578795 + U1 snRNA snRNA 1 164 -1 230 0 0 32 chrY 25934789 25934820 -25578764 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chrY 25935096 25935120 -25578464 + AT_rich Low_complexity Low_complexity 1 24 0 9314 57 6 0 chrY 25935625 25937602 -25575982 + L1PA4 LINE L1 4155 6149 -6 2823 0 0 0 chrY 25937682 25937988 -25575596 - AluYa5 SINE Alu -5 306 1 1657 167 26 3 chrY 25938304 25938763 -25574821 - AluSq SINE Alu 0 466 1 30 0 0 0 chrY 25939364 25939394 -25574190 + AT_rich Low_complexity Low_complexity 1 30 0 872 306 92 68 chrY 25939399 25940500 -25573084 - MER21-int LTR ERV1 -1011 3180 2054 1010 266 35 37 chrY 25940777 25941210 -25572374 - L1MA4 LINE L1 -4 6296 5865 297 0 0 0 chrY 25942658 25942691 -25570893 + (TAA)n Simple_repeat Simple_repeat 1 33 0 212 224 20 0 chrY 25943222 25943271 -25570313 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chrY 25944319 25944343 -25569241 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chrY 25945014 25945063 -25568521 + AT_rich Low_complexity Low_complexity 1 49 0 1206 238 90 4 chrY 25945184 25945461 -25568123 + AluSx SINE Alu 1 301 -1 3287 216 34 16 chrY 25945637 25946393 -25567191 - L1PA10 LINE L1 -11 6157 5388 1023 163 12 0 chrY 25946611 25946783 -25566801 - AluSq SINE Alu -11 302 129 711 280 160 7 chrY 25946811 25947111 -25566473 + L1MB7 LINE L1 5376 5721 -457 311 261 123 22 chrY 25947334 25947472 -25566112 - LTR40b LTR ERVL -252 210 59 914 241 14 38 chrY 25947472 25947762 -25565822 + L1MB7 LINE L1 5891 6173 -11 1098 192 20 82 chrY 25948339 25948631 -25564953 + AluSx SINE Alu 2 275 -37 372 43 0 0 chrY 25948655 25948701 -25564883 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 675 329 92 19 chrY 25948877 25949150 -25564434 - L2 LINE L2 -663 2651 2399 6812 113 8 23 chrY 25949150 25950237 -25563347 + MER11C LTR ERVK 1 1071 0 675 329 92 19 chrY 25950237 25950440 -25563144 - L2 LINE L2 -915 2399 2140 1114 219 60 4 chrY 25950469 25950738 -25562846 + AluJo SINE Alu 1 284 -18 237 305 37 0 chrY 25950778 25950860 -25562724 - L2 LINE L2 -1386 1928 1844 201 39 0 0 chrY 25952141 25952167 -25561417 + (CA)n Simple_repeat Simple_repeat 1 26 0 1483 161 8 0 chrY 25953832 25954074 -25559510 - AluSg SINE Alu -27 283 40 25 95 0 0 chrY 25954115 25954189 -25559395 + AT_rich Low_complexity Low_complexity 1 74 0 1303 196 4 0 chrY 25954189 25954414 -25559170 + AluSx SINE Alu 1 226 -86 291 85 0 0 chrY 25954451 25954498 -25559086 + (CA)n Simple_repeat Simple_repeat 2 48 0 678 239 73 30 chrY 25954519 25954888 -25558696 - L1 LINE L1 -761 6804 6420 505 264 35 21 chrY 25954925 25955069 -25558515 - FRAM SINE Alu -37 139 1 4589 215 71 48 chrY 25955069 25956579 -25557005 - L1 LINE L1 -1145 6420 4876 1398 254 125 16 chrY 25956646 25957224 -25556360 - L1 LINE L1 -3031 4534 3894 928 309 84 32 chrY 25957261 25957474 -25556110 - L1 LINE L1 -4812 2753 2553 1262 217 3 62 chrY 25957474 25957783 -25555801 - AluSq SINE Alu -22 291 1 928 309 84 32 chrY 25957783 25958317 -25555267 - L1 LINE L1 -5012 2553 1967 314 138 17 0 chrY 25959977 25960035 -25553549 + (TA)n Simple_repeat Simple_repeat 2 60 0 21 57 0 0 chrY 25960371 25960406 -25553178 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chrY 25961788 25961817 -25551767 + AT_rich Low_complexity Low_complexity 1 29 0 1148 246 90 4 chrY 25961938 25962215 -25551369 + AluSx SINE Alu 1 301 -1 625 244 165 0 chrY 25962384 25962560 -25551024 - AluJb SINE Alu -107 205 1 940 188 6 6 chrY 25965029 25965210 -25548374 - L1M2 LINE L1 -732 5559 5379 581 255 33 0 chrY 25965217 25965370 -25548214 + AluSg/x SINE Alu 128 285 -27 1018 184 10 54 chrY 25965401 25965695 -25547889 - L1M2 LINE L1 -769 5377 5097 1598 219 11 19 chrY 25965719 25966094 -25547490 + L1MA7 LINE L1 5595 5966 -325 491 267 82 0 chrY 25966095 25966230 -25547354 + FRAM SINE Alu 1 146 -30 1065 164 64 95 chrY 25966236 25966420 -25547164 + L1MA7 LINE L1 5944 6114 -177 1488 215 11 0 chrY 25966420 25966704 -25546880 + AluSq SINE Alu 4 290 -23 1065 164 64 95 chrY 25966704 25966877 -25546707 + L1MA7 LINE L1 6114 6291 0 1452 174 106 0 chrY 25967344 25967626 -25545958 - AluSx SINE Alu 0 312 1 209 160 0 40 chrY 25968039 25968089 -25545495 + CT-rich Low_complexity Low_complexity 5 52 0 580 241 36 0 chrY 25968094 25968231 -25545353 - FRAM SINE Alu -13 163 22 48 67 0 0 chrY 25969070 25969160 -25544424 + AT_rich Low_complexity Low_complexity 1 90 0 7599 25 0 0 chrY 25969619 25971074 -25542510 - L1PA2 LINE L1 -2 6153 4697 6906 29 2 1 chrY 25971077 25971909 -25541675 + L1P LINE L1 3680 4512 -1634 1842 167 0 0 chrY 25972063 25972350 -25541234 + AluSx SINE Alu 3 289 -23 237 306 155 42 chrY 25972714 25973139 -25540445 + L1M4 LINE L1 96 568 -5974 344 271 56 9 chrY 25973213 25973320 -25540264 - AluJb SINE Alu -20 282 171 647 279 45 25 chrY 25973330 25973531 -25540053 - AluJo SINE Alu -103 209 5 213 146 24 0 chrY 25973678 25973719 -25539865 + T-rich Low_complexity Low_complexity 4 45 0 1275 281 74 25 chrY 25973750 25974865 -25538719 + L1M4 LINE L1 858 2080 -4566 1895 72 6 3 chrY 25974875 25977522 -25536062 + L1PA4 LINE L1 1 2787 -3359 6950 59 2 1 chrY 25977547 25978793 -25534791 + L1PA4 LINE L1 4891 6147 -8 850 255 127 4 chrY 25978904 25979171 -25534413 + AluJo SINE Alu 8 307 -5 260 308 64 16 chrY 25979281 25979593 -25533991 + L1M4 LINE L1 2367 2693 -3953 312 263 75 0 chrY 25979685 25979765 -25533819 + L1M4 LINE L1 2914 2999 -3645 256 300 55 29 chrY 25979826 25980099 -25533485 + L1M4 LINE L1 3354 3633 -3011 * 3446 251 50 50 chrY 25980082 25981239 -25532345 + L1MB1 LINE L1 1253 2418 -4445 1603 217 0 3 chrY 25981239 25981552 -25532032 + AluSx SINE Alu 1 312 0 3446 251 50 50 chrY 25981552 25981933 -25531651 + L1MB1 LINE L1 2418 2798 -4065 1326 253 137 24 chrY 25982244 25983186 -25530398 + L1MB1 LINE L1 3507 4571 -2994 4200 249 130 16 chrY 25983264 25985461 -25528123 + L1MB1 LINE L1 4876 7339 -269 863 255 34 0 chrY 25985475 25985679 -25527905 - MSTB1 LTR MaLR -221 211 1 256 280 19 19 chrY 25985679 25985786 -25527798 + L1MA9 LINE L1 6168 6274 -38 222 37 0 0 chrY 25985793 25985820 -25527764 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 31139 137 20 13 chrY 25985820 25991911 -25521673 - L1PA6 LINE L1 -16 6138 11 1891 153 3 0 chrY 25991953 25992241 -25521343 - AluY SINE Alu -22 289 1 3957 132 0 0 chrY 25992580 25993165 -25520419 - LTR14C LTR ERVK 0 587 3 264 332 158 5 chrY 25993997 25994187 -25519397 + MIR SINE MIR 44 262 0 3405 109 198 72 chrY 25994530 25995264 -25518320 + LTR12 LTR ERV1 1 826 0 270 274 42 0 chrY 25996635 25996730 -25516854 - L1M4 LINE L1 -981 5165 5067 * 620 204 61 50 chrY 25996726 25996907 -25516677 + L1MB3 LINE L1 5371 5553 -631 514 202 0 0 chrY 25996907 25997011 -25516573 + L1MB3 LINE L1 6068 6171 -12 1829 165 0 3 chrY 25997098 25997401 -25516183 - AluY SINE Alu -9 302 1 368 227 65 40 chrY 25997528 25997681 -25515903 - L1MC3 LINE L1 -174 6000 5860 2435 117 63 36 chrY 25997846 25998292 -25515292 - LTR22B LTR ERVK -34 458 1 6030 200 36 2 chrY 25998665 26000297 -25513287 + L1PA8 LINE L1 6 1727 -4734 2948 168 8 2 chrY 26000306 26000813 -25512771 + LTR5 LTR ERVK 1 510 -459 1087 122 16 43 chrY 26000843 26001031 -25512553 + LTR5 LTR ERVK 787 969 0 15246 160 21 28 chrY 26001031 26002680 -25510904 + L1PA8 LINE L1 1723 3381 -3106 1213 250 0 48 chrY 26002680 26002996 -25510588 + AluSx SINE Alu 1 301 -1 15246 160 21 28 chrY 26002996 26005535 -25508049 + L1PA8 LINE L1 3381 6143 -344 1228 252 6 19 chrY 26005532 26005857 -25507727 - L1P4 LINE L1 -460 5708 5388 * 395 299 18 24 chrY 26006028 26006192 -25507392 + MER20 DNA MER1_type 57 219 0 3730 275 11 12 chrY 26006474 26007396 -25506188 - MER52A LTR ERV1 -2 1753 895 895 285 100 16 chrY 26007396 26007765 -25505819 - MER52A LTR ERV1 -658 1097 702 1938 199 24 8 chrY 26007799 26008181 -25505403 + MLT2A1 LTR ERVL 1 388 -56 16831 184 28 5 chrY 26008216 26009113 -25504471 + HERVL-A1 LTR ERVL 1 876 -4778 324 48 0 0 chrY 26009113 26009155 -25504429 + (CA)n Simple_repeat Simple_repeat 1 42 0 16831 184 28 5 chrY 26009155 26011327 -25502257 + HERVL-A1 LTR ERVL 876 3141 -2513 1606 152 19 0 chrY 26011335 26011645 -25501939 + HERVL-A1 LTR ERVL 5339 5654 0 1562 185 61 15 chrY 26011646 26011975 -25501609 + MLT2A1 LTR ERVL 3 346 -98 270 237 0 0 chrY 26011989 26012065 -25501519 + (TA)n Simple_repeat Simple_repeat 1 76 0 253 297 0 0 chrY 26013856 26013920 -25499664 - MER20 DNA MER1_type -73 146 83 216 381 52 15 chrY 26014016 26014150 -25499434 + L2 LINE L2 2823 2961 -352 26 30 0 0 chrY 26014155 26014188 -25499396 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chrY 26014272 26014315 -25499269 + AT_rich Low_complexity Low_complexity 1 43 0 551 323 117 15 chrY 26015492 26016167 -25497417 + L1M4c LINE L1 981 1724 -4660 2243 271 118 62 chrY 26016673 26017183 -25496401 + L1M4c LINE L1 23 503 -5881 195 69 0 0 chrY 26017183 26017212 -25496372 + (CA)n Simple_repeat Simple_repeat 2 30 0 2243 271 118 62 chrY 26017212 26017223 -25496361 + L1M4c LINE L1 503 512 -5872 244 61 20 0 chrY 26017223 26017272 -25496312 + LTR66 LTR ERVL 389 438 -172 2243 271 118 62 chrY 26017272 26018360 -25495224 + L1M4c LINE L1 512 1773 -4611 766 227 31 31 chrY 26018427 26018656 -25494928 + L1M4c LINE L1 1952 2180 -4204 563 262 18 22 chrY 26019881 26020057 -25493527 - MER21B LTR ERV1 -484 442 247 536 311 12 37 chrY 26020089 26020394 -25493190 - MER52A LTR ERV1 -1372 383 1 435 306 143 0 chrY 26020394 26020589 -25492995 - MER21B LTR ERV1 -622 241 19 1276 289 59 17 chrY 26021077 26021551 -25492033 + LTR25 LTR ERV1 249 742 -52 297 212 76 0 chrY 26021537 26021603 -25491981 + LTR25 LTR ERV1 471 541 -253 * 1181 267 58 3 chrY 26021592 26021952 -25491632 + LTR25 LTR ERV1 415 794 0 856 204 71 104 chrY 26022095 26022585 -25490999 + L1M4c LINE L1 1214 1687 -4697 21 0 0 0 chrY 26022624 26022645 -25490939 + AT_rich Low_complexity Low_complexity 1 21 0 5520 159 29 32 chrY 26022652 26023218 -25490366 - MER11C LTR ERVK 0 1071 508 309 26 0 0 chrY 26023218 26023256 -25490328 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5520 159 29 32 chrY 26023256 26023763 -25489821 - MER11C LTR ERVK -563 508 1 646 238 48 19 chrY 26023768 26023978 -25489606 + L1M4c LINE L1 2010 2225 -4159 1823 111 0 12 chrY 26025857 26026109 -25487475 + AluY SINE Alu 1 249 -62 21 71 0 0 chrY 26026667 26026709 -25486875 + AT_rich Low_complexity Low_complexity 1 42 0 565 285 7 0 chrY 26027074 26027218 -25486366 - MER21B LTR ERV1 -487 376 232 * 1426 335 8 0 chrY 26027217 26027685 -25485899 - MER52A LTR ERV1 -5 1750 1279 1438 349 23 16 chrY 26027699 26028426 -25485158 - HUERS-P3 LTR ERV1 -6489 2430 1699 516 269 107 29 chrY 26028622 26028966 -25484618 + LTR25 LTR ERV1 248 555 -239 435 213 107 0 chrY 26029051 26029173 -25484411 + MER61E LTR ERV1 431 565 -4 1650 176 14 10 chrY 26029235 26029525 -25484059 + AluY SINE Alu 5 295 -16 5235 291 37 35 chrY 26029535 26031878 -25481706 + MER61E-int LTR ERV1 45 2391 -4605 317 247 0 45 chrY 26031976 26032065 -25481519 - L1MC4 LINE L1 -1344 6698 6614 305 168 10 129 chrY 26032050 26032151 -25481433 - L1MC4 LINE L1 -1340 6702 6614 * 495 244 0 9 chrY 26032160 26032498 -25481086 + (TA)n Simple_repeat Simple_repeat 1 334 0 261 0 0 0 chrY 26032498 26032527 -25481057 + (GA)n Simple_repeat Simple_repeat 2 30 0 671 322 8 0 chrY 26032535 26032771 -25480813 + MER61E-int LTR ERV1 2454 2691 -6228 2220 252 33 76 chrY 26032789 26033617 -25479967 - LTR25 LTR ERV1 0 794 3 4778 246 71 54 chrY 26033619 26034546 -25479038 - LTR25-int LTR ERV1 0 6996 6086 207 0 0 0 chrY 26034546 26034569 -25479015 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4778 246 71 54 chrY 26034569 26036574 -25477010 - LTR25-int LTR ERV1 -910 6086 4117 1659 161 12 62 chrY 26036574 26036896 -25476688 + AluSc SINE Alu 1 306 -3 4778 246 71 54 chrY 26036896 26037974 -25475610 - LTR25-int LTR ERV1 -2879 4117 1041 204 40 0 0 chrY 26037983 26038008 -25475576 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 713 284 94 51 chrY 26038089 26038462 -25475122 - LTR25 LTR ERV1 0 794 406 1867 212 28 26 chrY 26038504 26038967 -25474617 - LTR25 LTR ERV1 -330 464 1 3397 285 45 36 chrY 26038973 26039031 -25474553 - HUERS-P3 LTR ERV1 -4217 2779 2723 186 71 0 0 chrY 26039031 26039059 -25474525 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3397 285 45 36 chrY 26039059 26041931 -25471653 - HUERS-P3 LTR ERV1 -4273 2723 228 1904 267 142 14 chrY 26042025 26042729 -25470855 - LTR25 LTR ERV1 0 794 1 2739 293 14 21 chrY 26042729 26043662 -25469922 + MER61-int LTR ERV1 2689 3614 -5305 1890 277 18 20 chrY 26043667 26044595 -25468989 + MER61-int LTR ERV1 3328 6973 -23 363 153 14 14 chrY 26044721 26044793 -25468791 + LTR25 LTR ERV1 222 293 -501 588 269 67 82 chrY 26044835 26045359 -25468225 + LTR25 LTR ERV1 269 784 -10 2755 332 39 22 chrY 26045394 26046726 -25466858 - HUERS-P3 LTR ERV1 -5866 3053 1699 239 250 14 0 chrY 26046819 26046891 -25466693 + LTR25 LTR ERV1 219 291 -503 444 275 46 96 chrY 26046919 26047159 -25466425 + LTR25 LTR ERV1 247 474 -320 270 0 0 0 chrY 26047312 26047342 -25466242 + (TTA)n Simple_repeat Simple_repeat 2 31 0 338 194 0 0 chrY 26047551 26047623 -25465961 - LTR25 LTR ERV1 -503 291 220 394 218 0 11 chrY 26047716 26047803 -25465781 + LTR25-int LTR ERV1 1699 1784 -7135 3480 140 11 11 chrY 26047805 26048369 -25465215 - LTR6A LTR ERV1 0 564 1 37114 201 34 32 chrY 26048369 26050181 -25463403 - HERVS71 LTR ERV1 -69 8909 7101 219 36 0 0 chrY 26050181 26050209 -25463375 + (TAA)n Simple_repeat Simple_repeat 1 28 0 37114 201 34 32 chrY 26050209 26056964 -25456620 - HERVS71 LTR ERV1 -1877 7101 330 1727 285 16 46 chrY 26056980 26057789 -25455795 + LTR25-int LTR ERV1 1605 2416 -4580 10716 222 14 23 chrY 26057896 26062158 -25451426 + HERVK3 LTR ERVK 2912 7237 -6 1621 184 76 45 chrY 26062164 26062583 -25451001 + LTR3b LTR ERVK 1 432 -5 801 215 9 68 chrY 26062589 26062808 -25450776 + AluSg/x SINE Alu 105 310 0 259 224 241 0 chrY 26062894 26063010 -25450574 + L1MC3 LINE L1 5254 5397 -947 1559 188 13 7 chrY 26063347 26063656 -25449928 + AluSx SINE Alu 1 311 -1 1229 266 57 33 chrY 26064426 26065027 -25448557 + L1MC3 LINE L1 5374 5988 -1797 542 130 60 0 chrY 26065262 26065362 -25448222 - L1MB3 LINE L1 -10 6173 6068 498 234 65 27 chrY 26065362 26065546 -25448038 - L1M4 LINE L1 -631 5553 5363 392 258 60 6 chrY 26065530 26065697 -25447887 + L1M4 LINE L1 5067 5242 -904 * 978 218 23 5 chrY 26065710 26065930 -25447654 + MER50 LTR ERV1 511 734 0 2071 241 67 22 chrY 26066100 26066817 -25446767 - L1MB5 LINE L1 -10 6164 5416 327 311 0 28 chrY 26067926 26068106 -25445478 + (CCCTAA)n Simple_repeat Simple_repeat 1 175 0 311 161 0 12 chrY 26068415 26068496 -25445088 + (CCCTAA)n Simple_repeat Simple_repeat 5 84 0 367 298 11 17 chrY 26068525 26068703 -25444881 + (CCCTAA)n Simple_repeat Simple_repeat 4 180 0 189 189 0 49 chrY 26068792 26068914 -25444670 + (CCCTAA)n Simple_repeat Simple_repeat 5 120 0 241 208 0 52 chrY 26068930 26069007 -25444577 + (CCCTAA)n Simple_repeat Simple_repeat 3 75 0 384 225 0 36 chrY 26069151 26069514 -25444070 + (CCCTAA)n Simple_repeat Simple_repeat 1 349 0 326 187 8 22 chrY 26069605 26069739 -25443845 + (CCCTAA)n Simple_repeat Simple_repeat 1 132 0 189 235 0 29 chrY 26069823 26069959 -25443625 + (CCCTAA)n Simple_repeat Simple_repeat 5 136 0 420 232 14 36 chrY 26070117 26070547 -25443037 + (CCCTAA)n Simple_repeat Simple_repeat 1 420 0 297 0 0 0 chrY 26071528 26071561 -25442023 + (CA)n Simple_repeat Simple_repeat 2 34 0 323 264 24 22 chrY 26071575 26071700 -25441884 + L1M4 LINE L1 4182 4321 -1825 1487 195 21 0 chrY 26071700 26071987 -25441597 - AluSp SINE Alu -20 293 1 323 264 24 22 chrY 26071987 26072054 -25441530 + L1M4 LINE L1 4321 4386 -1760 22 0 0 0 chrY 26072609 26072631 -25440953 + AT_rich Low_complexity Low_complexity 1 22 0 558 268 114 36 chrY 26073117 26073337 -25440247 + AluJb SINE Alu 44 280 -32 821 61 17 0 chrY 26073337 26073452 -25440132 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 495 295 7 7 chrY 26073744 26073893 -25439691 + AluJo SINE Alu 118 266 -46 2048 245 87 7 chrY 26073931 26074836 -25438748 + L1M4 LINE L1 4416 5393 -753 21 0 0 0 chrY 26075215 26075236 -25438348 + AT_rich Low_complexity Low_complexity 1 21 0 716 193 19 0 chrY 26075862 26076023 -25437561 - L1P4 LINE L1 -669 5499 5336 534 108 0 0 chrY 26076022 26076105 -25437479 + L1P LINE L1 5343 5425 -729 * 14810 142 23 8 chrY 26076114 26079561 -25434023 - L1PA7 LINE L1 -79 6390 2892 5333 189 17 39 chrY 26079563 26080706 -25432878 - L1PA7 LINE L1 -5340 1121 5 573 250 100 20 chrY 26080756 26081271 -25432313 + L1MC/D LINE L1 5017 5559 -748 1300 245 0 26 chrY 26081908 26082036 -25431548 + AluSx SINE Alu 1 131 -181 1559 217 3 10 chrY 26082036 26082350 -25431234 + AluSx SINE Alu 1 312 0 1300 245 0 26 chrY 26082350 26082527 -25431057 + AluSx SINE Alu 131 298 -14 24 32 0 0 chrY 26082624 26082655 -25430929 + AT_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chrY 26083948 26083989 -25429595 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chrY 26084194 26084218 -25429366 + AT_rich Low_complexity Low_complexity 1 24 0 30 27 0 0 chrY 26084242 26084279 -25429305 + AT_rich Low_complexity Low_complexity 1 37 0 1822 167 10 3 chrY 26086785 26087084 -25426500 + AluSp SINE Alu 1 301 -12 444 267 25 17 chrY 26087204 26087324 -25426260 + FLAM_C SINE Alu 2 122 -11 4565 31 0 0 chrY 26087572 26088137 -25425447 + L1PA3 LINE L1 5616 6180 0 286 331 166 6 chrY 26088485 26088648 -25424936 + L3 LINE CR1 194 382 -1195 1718 186 7 0 chrY 26089171 26089445 -25424139 + AluSg1 SINE Alu 12 287 -22 1677 180 7 14 chrY 26089574 26089868 -25423716 + AluSq SINE Alu 1 292 -21 1251 243 36 4 chrY 26090013 26090293 -25423291 - AluJb SINE Alu -23 289 1 399 303 115 59 chrY 26090521 26090825 -25422759 - L2 LINE L2 -11 3261 2941 305 259 76 87 chrY 26092898 26093083 -25420501 + L1MC4 LINE L1 7842 8024 -18 189 0 0 0 chrY 26093119 26093140 -25420444 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 690 203 0 30 chrY 26093140 26093273 -25420311 - FLAM_C SINE Alu -2 131 3 331 305 93 42 chrY 26093482 26093933 -25419651 + L1MC1 LINE L1 5271 5771 -2037 302 216 235 26 chrY 26094264 26094417 -25419167 - L1MC3 LINE L1 -1504 6281 6097 709 237 37 18 chrY 26094425 26094797 -25418787 - L1M4 LINE L1 -944 5202 4775 2336 131 15 61 chrY 26095369 26095828 -25417756 + LTR22B LTR ERVK 5 442 -50 1037 136 6 0 chrY 26095879 26096056 -25417528 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1341 251 0 0 chrY 26096064 26096347 -25417237 - AluSx SINE Alu -29 283 1 568 236 130 0 chrY 26096439 26096600 -25416984 - MER3 DNA MER1_type -4 205 24 213 39 0 0 chrY 26096807 26096833 -25416751 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 628 278 33 0 chrY 26098287 26098438 -25415146 + AluSg/x SINE Alu 121 276 -36 1521 209 17 7 chrY 26098550 26098837 -25414747 + AluSx SINE Alu 1 290 -22 1063 226 5 0 chrY 26098927 26099148 -25414436 + L1MC1 LINE L1 6104 6325 -8 19837 108 16 4 chrY 26099722 26102760 -25410824 + L1P LINE L1 12 3087 -3059 606 93 0 0 chrY 26102770 26102856 -25410728 + L1PA5 LINE L1 11 96 -6050 32413 82 8 7 chrY 26102856 26108377 -25405207 + L1PA5 LINE L1 623 6148 -6 585 151 40 0 chrY 26108643 26108769 -25404815 + GA-rich Low_complexity Low_complexity 3 133 0 710 244 85 5 chrY 26110957 26111158 -25402426 - MER20 DNA MER1_type 0 219 3 1213 281 48 20 chrY 26111938 26112393 -25401191 - MLT1D LTR MaLR -17 488 21 1405 198 0 4 chrY 26112732 26112979 -25400605 + AluSx SINE Alu 1 246 -66 425 202 256 24 chrY 26113001 26113169 -25400415 - MER3 DNA MER1_type 0 209 3 191 133 22 0 chrY 26113607 26113652 -25399932 + (CA)n Simple_repeat Simple_repeat 1 46 0 315 283 58 7 chrY 26113936 26114074 -25399510 - MER58B DNA MER1_type -8 333 189 233 276 246 4 chrY 26114433 26114613 -25398971 - MIR SINE MIR -10 252 30 201 39 0 0 chrY 26114777 26114803 -25398781 + (TTG)n Simple_repeat Simple_repeat 2 27 0 734 205 9 105 chrY 26114845 26115055 -25398529 - AluJb SINE Alu -119 193 4 1027 242 106 26 chrY 26117227 26117652 -25395932 - MLT1C LTR MaLR -7 460 2 26 30 0 0 chrY 26117659 26117692 -25395892 + AT_rich Low_complexity Low_complexity 1 33 0 7087 53 0 2 chrY 26118911 26120190 -25393394 - L1PA4 LINE L1 -1 6154 4873 34532 80 3 1 chrY 26120244 26125102 -25388482 - L1PA4 LINE L1 -1276 4870 1 1477 205 8 0 chrY 26125257 26125520 -25388064 - AluSq SINE Alu -37 276 12 286 211 0 0 chrY 26126115 26126167 -25387417 + AluJ/monomer SINE Alu 3 54 -246 2744 10 0 3 chrY 26127720 26128022 -25385562 - AluYa5 SINE Alu -10 301 1 2232 113 3 3 chrY 26130296 26130606 -25382978 - AluY SINE Alu -1 310 1 1762 153 7 17 chrY 26131031 26131325 -25382259 + AluSg SINE Alu 1 291 -19 7366 163 53 15 chrY 26131325 26132754 -25380830 - L1P3 LINE L1 -4633 1828 356 372 193 12 0 chrY 26132754 26132837 -25380747 - LTR19B-int LTR ERV1 -3293 1924 1841 3232 181 33 21 chrY 26133016 26133629 -25379955 - LTR19B-int LTR ERV1 -7099 620 1 1620 194 55 0 chrY 26133629 26133954 -25379630 - LTR19B LTR ERV1 0 580 238 660 183 0 0 chrY 26133947 26134062 -25379522 - LTR19B LTR ERV1 -465 115 1 * 22 0 0 0 chrY 26134852 26134874 -25378710 + AT_rich Low_complexity Low_complexity 1 22 0 522 147 21 0 chrY 26135097 26135192 -25378392 - AluSc SINE Alu -4 305 209 327 300 22 0 chrY 26135196 26135286 -25378298 - L1MC4 LINE L1 -1338 6704 6613 248 196 0 0 chrY 26135286 26135337 -25378247 - L1MC4 LINE L1 -1340 6702 6652 750 184 0 7 chrY 26135338 26135474 -25378110 - AluY SINE Alu -176 135 1 239 333 53 38 chrY 26135493 26135625 -25377959 + MER5B DNA MER1_type 44 177 -1 21 0 0 0 chrY 26136166 26136187 -25377397 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chrY 26136332 26136358 -25377226 + AT_rich Low_complexity Low_complexity 1 26 0 300 311 64 54 chrY 26136514 26136810 -25376774 - MER46C DNA MER2_type -39 299 1 291 54 0 0 chrY 26137663 26137700 -25375884 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1329 162 0 0 chrY 26137715 26137919 -25375665 - AluSg/x SINE Alu -29 280 77 265 230 162 0 chrY 26138641 26138715 -25374869 - L2 LINE L2 -8 3305 3220 21 0 0 0 chrY 26138963 26138984 -25374600 + AT_rich Low_complexity Low_complexity 1 21 0 486 282 0 47 chrY 26139435 26139584 -25374000 + FRAM SINE Alu 1 141 -35 203 374 128 5 chrY 26139697 26139916 -25373668 + MIR SINE MIR 17 262 0 1077 147 0 0 chrY 26140282 26140439 -25373145 + U1 snRNA snRNA 3 159 -6 27 0 0 0 chrY 26141129 26141156 -25372428 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chrY 26141330 26141351 -25372233 + AT_rich Low_complexity Low_complexity 1 21 0 873 148 0 22 chrY 26141623 26141806 -25371778 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 201 39 0 0 chrY 26141833 26141859 -25371725 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1540 200 10 7 chrY 26141859 26142154 -25371430 - AluSg SINE Alu -14 296 1 25 31 0 0 chrY 26142746 26142778 -25370806 + AT_rich Low_complexity Low_complexity 1 32 0 767 297 126 34 chrY 26142783 26143285 -25370299 - MER4B-int LTR ERV1 -1011 3180 2633 676 34 0 13 chrY 26143463 26143567 -25370017 - L1PA2 LINE L1 -270 5881 5782 2526 14 0 0 chrY 26143567 26143894 -25369690 + L1PA2 LINE L1 5866 6192 0 302 207 17 0 chrY 26143971 26144029 -25369555 - MER4B-int LTR ERV1 -1547 5211 5153 1090 265 20 36 chrY 26144602 26145047 -25368537 - L1MA4 LINE L1 -1 6299 5862 23 33 0 0 chrY 26145441 26145471 -25368113 + AT_rich Low_complexity Low_complexity 1 30 0 210 37 0 0 chrY 26147028 26147055 -25366529 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chrY 26148128 26148149 -25365435 + AT_rich Low_complexity Low_complexity 1 21 0 6505 56 1 0 chrY 26148149 26148965 -25364619 - L1PA3 LINE L1 -3 6152 5336 * 15979 44 1 0 chrY 26148963 26150945 -25362639 + L1PA3 LINE L1 3358 5341 -805 826 171 48 88 chrY 26151138 26151366 -25362218 + AluSg SINE Alu 64 282 -28 21 36 0 0 chrY 26151386 26151414 -25362170 + AT_rich Low_complexity Low_complexity 1 28 0 188 227 23 0 chrY 26151464 26151508 -25362076 - L2 LINE L2 -78 3235 3191 433 305 29 0 chrY 26151778 26151952 -25361632 + L1MB7 LINE L1 5985 6163 -21 637 328 106 11 chrY 26151984 26152435 -25361149 - L2 LINE L2 -658 2656 2163 1114 227 54 4 chrY 26152487 26152765 -25360819 + AluJb SINE Alu 1 292 -10 21 36 0 0 chrY 26152782 26152810 -25360774 + AT_rich Low_complexity Low_complexity 1 28 0 1664 167 11 0 chrY 26155930 26156199 -25357385 - AluSg SINE Alu -38 272 1 1348 188 9 0 chrY 26156263 26156487 -25357097 + AluSq SINE Alu 1 226 -87 350 85 17 0 chrY 26156509 26156568 -25357016 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 219 36 0 0 chrY 26156603 26156631 -25356953 + (CA)n Simple_repeat Simple_repeat 1 28 0 598 249 100 20 chrY 26156632 26156982 -25356602 - L1 LINE L1 -768 6797 6420 422 304 80 0 chrY 26157013 26157151 -25356433 - FAM SINE Alu -29 156 8 3572 214 79 41 chrY 26157158 26158333 -25355251 - L1 LINE L1 -1140 6425 5206 6788 129 7 18 chrY 26158333 26159416 -25354168 - MER11C LTR ERVK 0 1071 1 730 90 10 0 chrY 26159416 26159516 -25354068 - HERVK11 LTR ERVK 0 7953 7853 5834 86 18 0 chrY 26159516 26160298 -25353286 - HERVK11 LTR ERVK -201 7752 6957 4701 96 14 0 chrY 26160285 26160929 -25352655 - HERVK11 LTR ERVK -1188 6765 6113 * 681 226 79 94 chrY 26160929 26161269 -25352315 - L1 LINE L1 -2355 5210 4876 1465 238 119 20 chrY 26161294 26161907 -25351677 - L1 LINE L1 -2998 4567 3894 919 281 94 43 chrY 26161945 26162159 -25351425 - L1 LINE L1 -4815 2750 2548 1462 227 3 7 chrY 26162159 26162478 -25351106 - AluSq SINE Alu 0 313 1 919 281 94 43 chrY 26162478 26163009 -25350575 - L1 LINE L1 -5017 2548 1967 475 285 224 0 chrY 26163418 26163583 -25350001 - AluSp SINE Alu -111 202 1 197 358 22 56 chrY 26164067 26164246 -25349338 + L2 LINE L2 2460 2632 -682 22 70 0 0 chrY 26164521 26164564 -25349020 + AT_rich Low_complexity Low_complexity 1 43 0 934 203 0 6 chrY 26166009 26166191 -25347393 - L1M2 LINE L1 -753 5559 5379 740 217 21 0 chrY 26166198 26166341 -25347243 + AluSg/x SINE Alu 128 273 -39 333 102 0 0 chrY 26166351 26166410 -25347174 + (CAAT)n Simple_repeat Simple_repeat 2 60 0 821 200 57 54 chrY 26166424 26166496 -25347088 - L1M2 LINE L1 -769 5377 5307 234 0 0 0 chrY 26166496 26166522 -25347062 + (TTG)n Simple_repeat Simple_repeat 2 27 0 821 200 57 54 chrY 26166522 26166729 -25346855 - L1M2 LINE L1 -839 5307 5097 * 1695 199 10 34 chrY 26166726 26167113 -25346471 + L1MA7 LINE L1 5575 5952 -339 570 301 0 0 chrY 26167128 26167274 -25346310 + FRAM SINE Alu 1 146 -30 919 211 49 84 chrY 26167299 26167472 -25346112 + L1MA7 LINE L1 5958 6115 -176 1590 193 7 0 chrY 26167472 26167757 -25345827 + AluSq SINE Alu 4 290 -23 919 211 49 84 chrY 26167757 26167929 -25345655 + L1MA7 LINE L1 6115 6291 0 25 31 0 0 chrY 26167929 26167961 -25345623 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chrY 26168365 26168394 -25345190 + AT_rich Low_complexity Low_complexity 1 29 0 1261 211 17 0 chrY 26168409 26168646 -25344938 - AluSx SINE Alu -71 241 1 235 280 0 0 chrY 26169058 26169108 -25344476 + polypyrimidine Low_complexity Low_complexity 3 52 0 794 221 42 21 chrY 26169108 26169298 -25344286 - AluJo SINE Alu 0 312 119 45 75 0 0 chrY 26170162 26170256 -25343328 + AT_rich Low_complexity Low_complexity 1 94 0 40782 52 26 1 chrY 26170778 26176764 -25336820 - L1PA3 LINE L1 -8 6147 13 1643 190 3 0 chrY 26176848 26177132 -25336452 + AluSx SINE Alu 3 287 -25 342 294 102 61 chrY 26177351 26177596 -25335988 + L1M4 LINE L1 349 603 -5939 390 210 110 20 chrY 26177632 26177732 -25335852 - AluJb SINE Alu -20 282 174 752 263 49 15 chrY 26177739 26177944 -25335640 - AluJb SINE Alu -98 214 3 216 179 0 0 chrY 26178087 26178126 -25335458 + T-rich Low_complexity Low_complexity 2 40 0 1526 293 51 28 chrY 26178144 26179335 -25334249 + L1M4 LINE L1 858 2153 -4493 768 253 145 8 chrY 26179336 26179577 -25334007 + AluJo SINE Alu 11 284 -28 21 57 0 0 chrY 26179763 26179798 -25333786 + AT_rich Low_complexity Low_complexity 1 35 0 31967 134 8 18 chrY 26179806 26185686 -25327898 - L1PA6 LINE L1 -326 5828 11 394 121 0 0 chrY 26185723 26185789 -25327795 - Alu SINE Alu 0 302 237 4382 99 2 0 chrY 26186036 26186622 -25326962 - LTR14C LTR ERVK 0 587 1 240 288 181 54 chrY 26187504 26187709 -25325875 + MIR SINE MIR 31 261 -1 23 33 0 0 chrY 26188583 26188613 -25324971 + AT_rich Low_complexity Low_complexity 1 30 0 442 44 0 77 chrY 26189030 26189121 -25324463 + (TTAAA)n Simple_repeat Simple_repeat 3 86 0 229 305 12 12 chrY 26189171 26189253 -25324331 - HAL1 LINE L1 -598 1909 1828 748 254 56 68 chrY 26190513 26190922 -25322662 - L1ME1 LINE L1 -179 5987 5584 1974 241 58 60 chrY 26191707 26192442 -25321142 + MER50 LTR ERV1 1 734 0 2600 240 48 9 chrY 26192611 26193534 -25320050 - L1MB5 LINE L1 -136 6038 5083 744 176 60 55 chrY 26193546 26193728 -25319856 + L1MB3 LINE L1 5371 5553 -621 563 167 9 9 chrY 26193728 26193842 -25319742 + L1MB3 LINE L1 6068 6181 -2 1742 174 3 10 chrY 26193944 26194248 -25319336 - AluY SINE Alu -9 302 1 346 269 46 15 chrY 26194375 26194505 -25319079 - L1MC3 LINE L1 -1767 6018 5885 1821 145 33 33 chrY 26194703 26195035 -25318549 - LTR22B LTR ERVK -34 458 127 396 107 0 0 chrY 26195032 26195088 -25318496 + AluY SINE Alu 80 135 -166 * 643 209 0 39 chrY 26195088 26195267 -25318317 + AluJo/FRAM SINE Alu 137 309 0 1466 216 9 23 chrY 26195267 26195615 -25317969 + L1P LINE L1 2011 2353 -3793 5547 116 35 3 chrY 26195630 26196932 -25316652 + L1PA8 LINE L1 4826 6166 -6 356 212 99 13 chrY 26197452 26197625 -25315959 - L1MC3 LINE L1 -765 5381 5197 1084 73 0 0 chrY 26197627 26197763 -25315821 - AluY SINE Alu -10 301 166 1383 212 0 18 chrY 26197763 26198046 -25315538 - AluSx SINE Alu -30 282 5 418 293 132 22 chrY 26198058 26198467 -25315117 - L1MC3 LINE L1 -965 5181 4728 910 231 107 12 chrY 26198630 26198872 -25314712 - AluJo SINE Alu -47 265 1 313 296 24 29 chrY 26198874 26199080 -25314504 - L1MC3 LINE L1 -1637 4509 4305 2293 163 30 90 chrY 26200130 26200746 -25312838 - MER4B LTR ERV1 -25 754 9 306 250 42 0 chrY 26200752 26200848 -25312736 - MER31-int LTR ERV1 -1316 3620 3521 1006 229 97 8 chrY 26201121 26201388 -25312196 - AluJo SINE Alu -3 309 19 6256 30 0 0 chrY 26201665 26202398 -25311186 - L1PA3 LINE L1 0 6155 5423 803 315 54 14 chrY 26203046 26203618 -25309966 - L1M4 LINE L1 -1747 4897 4303 333 210 18 18 chrY 26203934 26204101 -25309483 + (TTAGGG)n Simple_repeat Simple_repeat 6 172 0 345 168 0 48 chrY 26204164 26204331 -25309253 + (TTAGGG)n Simple_repeat Simple_repeat 6 164 0 289 182 15 23 chrY 26204366 26204498 -25309086 + (TTAGGG)n Simple_repeat Simple_repeat 4 134 0 260 224 10 0 chrY 26204568 26204666 -25308918 + (TTAGGG)n Simple_repeat Simple_repeat 1 99 0 250 223 10 32 chrY 26204765 26205078 -25308506 + (TTAGGG)n Simple_repeat Simple_repeat 1 305 0 1466 218 10 0 chrY 26205163 26205498 -25308086 - AluSp SINE Alu 0 339 2 784 336 27 5 chrY 26205603 26205966 -25307618 + MER52A LTR ERV1 923 1249 -506 1496 245 90 24 chrY 26207000 26207692 -25305892 - L1M4 LINE L1 -4568 2078 1329 1678 174 11 0 chrY 26207692 26207956 -25305628 - AluSc SINE Alu -22 287 21 1496 245 90 24 chrY 26207956 26207994 -25305590 - L1M4 LINE L1 -5317 1329 1295 305 255 112 27 chrY 26208112 26208300 -25305284 - L1M4c LINE L1 -3886 2498 2295 21 89 0 0 chrY 26208412 26208468 -25305116 + AT_rich Low_complexity Low_complexity 1 56 0 522 40 27 0 chrY 26209457 26209531 -25304053 + L1PA6 LINE L1 6078 6153 -1 351 333 45 50 chrY 26209616 26209817 -25303767 - L2 LINE L2 -352 2962 2763 282 262 0 0 chrY 26209848 26209909 -25303675 + MER20 DNA MER1_type 90 150 -69 1943 96 9 68 chrY 26210157 26210481 -25303103 + AluY SINE Alu 1 305 -6 505 127 0 0 chrY 26210876 26210955 -25302629 - HERVL LTR ERVL -4866 788 710 2432 272 19 7 chrY 26210956 26211540 -25302044 + MER52A LTR ERV1 1161 1751 -4 512 208 264 0 chrY 26211735 26211860 -25301724 - AluSq SINE Alu -19 294 137 1699 180 0 27 chrY 26212169 26212294 -25301290 + AluSq SINE Alu 2 129 -184 309 51 0 0 chrY 26212294 26212333 -25301251 + (CA)n Simple_repeat Simple_repeat 2 40 0 1699 180 0 27 chrY 26212333 26212507 -25301077 + AluSq SINE Alu 129 293 -20 36 40 0 0 chrY 26212647 26212697 -25300887 + AT_rich Low_complexity Low_complexity 1 50 0 898 250 108 4 chrY 26212877 26213109 -25300475 - AluSp SINE Alu -57 256 1 29 70 0 0 chrY 26213209 26213266 -25300318 + AT_rich Low_complexity Low_complexity 1 57 0 383 266 11 21 chrY 26218099 26218193 -25295391 + AluJo SINE Alu 89 181 -121 25 51 0 0 chrY 26218430 26218469 -25295115 + AT_rich Low_complexity Low_complexity 1 39 0 763 282 20 5 chrY 26218593 26218795 -25294789 + AluJ SINE Alu 1 205 -107 210 160 0 0 chrY 26218844 26218894 -25294690 + (CA)n Simple_repeat Simple_repeat 1 50 0 2001 261 8 4 chrY 26219396 26219878 -25293706 - MER1A DNA MER1_type -18 511 28 379 270 40 10 chrY 26219891 26219991 -25293593 + AluJ SINE Alu 198 300 -2 21 36 0 0 chrY 26219994 26220022 -25293562 + AT_rich Low_complexity Low_complexity 1 28 0 1171 189 9 0 chrY 26220895 26221107 -25292477 + AluSq SINE Alu 81 294 -19 219 288 62 0 chrY 26221112 26221192 -25292392 + MIR SINE MIR 177 261 -1 661 273 36 0 chrY 26221465 26221659 -25291925 - MER2 DNA MER2_type -138 207 7 22 35 0 0 chrY 26221756 26221785 -25291799 + AT_rich Low_complexity Low_complexity 1 29 0 2727 16 0 0 chrY 26222411 26222714 -25290870 - AluYa5 SINE Alu -8 303 1 23 78 0 0 chrY 26222996 26223047 -25290537 + AT_rich Low_complexity Low_complexity 1 51 0 1397 224 21 0 chrY 26223641 26223927 -25289657 - AluSx SINE Alu -16 296 5 315 0 0 0 chrY 26224373 26224408 -25289176 + (CA)n Simple_repeat Simple_repeat 2 36 0 183 200 18 27 chrY 26224656 26224766 -25288818 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 259 194 42 0 chrY 26224796 26225016 -25288568 + (TA)n Simple_repeat Simple_repeat 1 229 0 30029 84 2 4 chrY 26225016 26231157 -25282427 - L1PA5 LINE L1 -9 6145 11 1496 204 36 0 chrY 26231735 26232014 -25281570 + AluSx SINE Alu 1 289 -23 1005 299 74 21 chrY 26232582 26233094 -25280490 + L1MDa LINE L1 35 573 -5967 321 344 82 39 chrY 26233074 26233353 -25280231 + L1MDa LINE L1 781 1071 -5469 * 813 219 18 0 chrY 26233376 26233538 -25280046 - MER52C LTR ERV1 0 1278 1114 536 159 35 0 chrY 26233538 26233651 -25279933 + LTR22 LTR ERVK 1 117 -463 1555 189 22 6 chrY 26233668 26233985 -25279599 + LTR22 LTR ERVK 255 576 -4 568 192 149 48 chrY 26234021 26234229 -25279355 - MER52C LTR ERV1 -160 1118 890 1040 277 69 39 chrY 26234233 26234987 -25278597 - L1M4 LINE L1 -942 5204 4428 1720 173 17 7 chrY 26235377 26235672 -25277912 + AluSp SINE Alu 1 298 -15 889 223 17 52 chrY 26235776 26236121 -25277463 - L1MDa LINE L1 -6143 397 65 2463 165 71 4 chrY 26236322 26236801 -25276783 - MER9 LTR ERVK 0 511 1 11652 139 37 44 chrY 26236801 26238961 -25274623 - HERVK9 LTR ERVK 0 5916 3773 7516 140 49 48 chrY 26238952 26239622 -25273962 - HERVK9 LTR ERVK -4419 1497 829 * 204 200 0 83 chrY 26239622 26239682 -25273902 - MER5B DNA MER1_type -69 109 55 7516 140 49 48 chrY 26239682 26240448 -25273136 - HERVK9 LTR ERVK -5087 829 1 2010 186 110 7 chrY 26240448 26240505 -25273079 - MER9 LTR ERVK 0 511 461 225 0 0 0 chrY 26240505 26240530 -25273054 + (CA)n Simple_repeat Simple_repeat 2 26 0 2010 186 110 7 chrY 26240530 26240935 -25272649 - MER9 LTR ERVK -50 461 1 256 211 42 0 chrY 26242254 26242325 -25271259 + MER53 DNA DNA 115 188 -1 245 167 103 0 chrY 26242693 26242771 -25270813 + (ATTTG)n Simple_repeat Simple_repeat 3 88 0 24 32 0 0 chrY 26243249 26243280 -25270304 + AT_rich Low_complexity Low_complexity 1 31 0 1874 133 3 3 chrY 26245592 26245877 -25267707 + AluY SINE Alu 27 311 0 1067 211 59 88 chrY 26246932 26247306 -25266278 - MLT1A1 LTR MaLR 0 365 3 21 36 0 0 chrY 26248089 26248117 -25265467 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chrY 26249643 26249686 -25263898 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1423 184 8 0 chrY 26249686 26249925 -25263659 - AluSg SINE Alu -36 274 34 190 309 100 36 chrY 26250144 26250254 -25263330 + L2 LINE L2 3170 3286 -27 2524 203 66 7 chrY 26250561 26251122 -25262462 - LTR4 LTR ERV1 -2 594 1 15323 159 29 15 chrY 26251122 26253894 -25259690 - HERV3 LTR ERV1 0 8426 5616 29936 175 15 9 chrY 26253896 26259267 -25254317 - HERV3 LTR ERV1 -3024 5402 1 656 216 0 0 chrY 26259268 26259393 -25254191 - LTR4 LTR ERV1 0 596 472 537 322 17 13 chrY 26259431 26259661 -25253923 - L1MDa LINE L1 -6191 349 119 225 301 0 32 chrY 26260027 26260120 -25253464 + MIR SINE MIR 124 213 -49 2386 74 0 7 chrY 26260970 26261269 -25252315 - AluY SINE Alu -14 297 1 328 124 5 240 chrY 26261344 26261561 -25252023 - MER53 DNA DNA -1 188 23 21 0 0 0 chrY 26262370 26262391 -25251193 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrY 26264393 26264416 -25249168 + AT_rich Low_complexity Low_complexity 1 23 0 837 243 64 94 chrY 26265873 26266247 -25247337 - MLT1A1 LTR MaLR 0 365 3 209 247 11 34 chrY 26268398 26268487 -25245097 + CT-rich Low_complexity Low_complexity 4 90 0 258 106 0 0 chrY 26269210 26269257 -25244327 + (T)n Simple_repeat Simple_repeat 1 47 0 265 289 60 0 chrY 26270812 26270895 -25242689 + L2 LINE L2 3206 3293 -20 8527 61 4 2 chrY 26271390 26273279 -25240305 - L1PA5 LINE L1 -1 6153 4261 9609 35 0 0 chrY 26273279 26274571 -25239013 - L1P1 LINE L1 -701 5454 4163 1915 122 4 0 chrY 26274571 26274833 -25238751 - AluY SINE Alu -2 309 47 197 234 39 104 chrY 26275388 26275465 -25238119 - MIR SINE MIR -38 224 153 914 148 15 0 chrY 26275688 26275823 -25237761 + AluSq/x SINE Alu 1 137 -175 14191 96 3 34 chrY 26275825 26278023 -25235561 + L1PA4 LINE L1 7 2137 -4009 5159 67 8 8 chrY 26278012 26278889 -25234695 + L1PA4 LINE L1 5101 5979 -176 * 21 36 0 0 chrY 26279190 26279218 -25234366 + AT_rich Low_complexity Low_complexity 1 28 0 3489 17 0 5 chrY 26279572 26279986 -25233598 - L1PA2 LINE L1 -377 5778 5365 3182 34 0 0 chrY 26279986 26280363 -25233221 + L1PA2 LINE L1 5776 6155 0 180 0 0 0 chrY 26280370 26280390 -25233194 + (CA)n Simple_repeat Simple_repeat 1 20 0 335 315 54 8 chrY 26281049 26281179 -25232405 + L2 LINE L2 2823 2958 -355 21 36 0 0 chrY 26282153 26282181 -25231403 + AT_rich Low_complexity Low_complexity 1 28 0 380 309 138 20 chrY 26282221 26282467 -25231117 + L1M4 LINE L1 976 1250 -5292 442 120 13 0 chrY 26282479 26282554 -25231030 + LTR15 LTR ERV1 1 76 -417 2055 113 8 7 chrY 26282556 26282764 -25230820 + HERV15 LTR ERV1 6770 6976 -1759 200 33 0 33 chrY 26282764 26282794 -25230790 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2055 113 8 7 chrY 26282794 26283305 -25230279 + HERV15 LTR ERV1 6976 7642 -1093 804 107 16 0 chrY 26283307 26283428 -25230156 + LTR15 LTR ERV1 355 477 -16 2693 168 25 25 chrY 26284097 26284692 -25228892 + L1PA10 LINE L1 5390 5984 -184 863 130 7 0 chrY 26284688 26284826 -25228758 + L1P LINE L1 1 139 -6007 * 17801 53 1 1 chrY 26284826 26287887 -25225697 + L1PA4 LINE L1 3085 6155 0 954 173 60 0 chrY 26287896 26288064 -25225520 + AluSg/x SINE Alu 118 295 -15 1736 198 71 41 chrY 26288082 26288591 -25224993 - LTR61 LTR ERV1 0 595 72 491 258 0 8 chrY 26288611 26288739 -25224845 - HERV3 LTR ERV1 -17 8409 8283 6263 271 17 16 chrY 26288823 26291501 -25222083 - HERV3 LTR ERV1 -3666 4760 1986 4528 267 40 14 chrY 26291499 26292763 -25220821 - HERV3 LTR ERV1 -6768 1658 363 * 1639 237 0 13 chrY 26292830 26293205 -25220379 - HERV3 LTR ERV1 -8052 374 5 1147 191 40 82 chrY 26293209 26293586 -25219998 - LTR61 LTR ERV1 0 595 235 1658 197 0 25 chrY 26293809 26294129 -25219455 + AluSx SINE Alu 1 312 0 193 304 36 0 chrY 26295822 26295878 -25217706 - MIR SINE MIR -1 261 204 474 232 27 96 chrY 26295895 26296115 -25217469 + MER46C DNA MER2_type 5 209 -129 191 304 157 10 chrY 26296198 26296300 -25217284 - MIR SINE MIR -82 180 64 513 243 145 38 chrY 26296771 26297006 -25216578 - MIR SINE MIR -1 261 2 21 36 0 0 chrY 26298277 26298305 -25215279 + AT_rich Low_complexity Low_complexity 1 28 0 235 342 114 11 chrY 26299052 26299236 -25214348 + L3 LINE CR1 195 397 -1180 369 111 0 37 chrY 26299553 26299634 -25213950 + (TA)n Simple_repeat Simple_repeat 1 78 0 1427 212 10 14 chrY 26299915 26300212 -25213372 + AluSx SINE Alu 1 296 -16 1465 217 11 3 chrY 26300406 26300692 -25212892 - AluJb SINE Alu -24 288 1 372 366 84 36 chrY 26300893 26301202 -25212382 - L2 LINE L2 -5 3267 2944 186 43 0 0 chrY 26302124 26302147 -25211437 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 3393 108 28 6 chrY 26302604 26303045 -25210539 + MER9 LTR ERVK 1 456 -55 396 0 0 0 chrY 26303045 26303089 -25210495 + (TG)n Simple_repeat Simple_repeat 1 44 0 3393 108 28 6 chrY 26303089 26303147 -25210437 + MER9 LTR ERVK 456 511 0 3695 109 28 3 chrY 26303147 26303725 -25209859 + HERVK9 LTR ERVK 1 592 -5324 5344 94 1 5 chrY 26303725 26304480 -25209104 + HERVK9 LTR ERVK 1268 2019 -3897 188 322 34 51 chrY 26304613 26304731 -25208853 - L2 LINE L2 -5 3308 3193 241 191 0 0 chrY 26304732 26304774 -25208810 - LTR33 LTR ERVL -2 519 478 * 738 310 118 6 chrY 26304770 26305102 -25208482 - LTR33 LTR ERVL -149 372 4 258 364 93 0 chrY 26305102 26305240 -25208344 - LTR33 LTR ERVL -370 151 1 318 291 67 51 chrY 26305438 26305692 -25207892 - L1MC5 LINE L1 -37 7924 7667 403 275 44 11 chrY 26305818 26306000 -25207584 - L1MC5 LINE L1 -518 7443 7256 438 295 51 27 chrY 26306138 26306474 -25207110 - L1MC5 LINE L1 -742 7219 6876 407 322 60 20 chrY 26307553 26307702 -25205882 - MIR3 SINE MIR -43 165 11 244 287 37 93 chrY 26307857 26307965 -25205619 - MER5B DNA MER1_type -72 106 5 269 154 39 13 chrY 26308827 26308905 -25204679 + GA-rich Low_complexity Low_complexity 1 80 0 258 331 35 55 chrY 26309272 26309417 -25204167 + MIR SINE MIR 65 206 -56 24 53 0 0 chrY 26310623 26310661 -25202923 + AT_rich Low_complexity Low_complexity 1 38 0 237 264 97 0 chrY 26311240 26311312 -25202272 + MIR SINE MIR 86 164 -98 370 408 25 0 chrY 26311737 26311894 -25201690 + L2 LINE L2 3091 3251 -21 197 163 20 0 chrY 26311907 26311956 -25201628 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 203 0 0 chrY 26313043 26313102 -25200482 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chrY 26313121 26313144 -25200440 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 26313212 26313235 -25200349 + AT_rich Low_complexity Low_complexity 1 23 0 3299 113 11 4 chrY 26313235 26313759 -25199825 - L1MA1 LINE L1 -6 6296 5769 1259 20 0 0 chrY 26313761 26313908 -25199676 - L1PA2 LINE L1 -3 6152 6006 341 94 0 0 chrY 26313908 26313961 -25199623 - L1MA1 LINE L1 -528 5777 5725 405 109 6 14 chrY 26313965 26314057 -25199527 + L1M1 LINE L1 5587 5668 -483 937 266 4 35 chrY 26314770 26315029 -25198555 + AluJo SINE Alu 8 258 -54 2589 64 0 0 chrY 26318365 26318676 -25194908 + AluY SINE Alu 1 311 0 1150 168 88 118 chrY 26320045 26320509 -25193075 + LTR7 LTR ERV1 1 450 0 347 118 9 55 chrY 26322097 26322207 -25191377 + (TA)n Simple_repeat Simple_repeat 2 106 0 507 96 0 0 chrY 26322698 26322781 -25190803 + (GA)n Simple_repeat Simple_repeat 1 83 0 470 257 129 7 chrY 26322781 26322921 -25190663 - FAM SINE Alu -17 158 2 1010 249 15 15 chrY 26326769 26327062 -25186522 + AluJo SINE Alu 13 305 0 1936 162 7 0 chrY 26327062 26327358 -25186226 + AluSx SINE Alu 1 298 -14 1700 184 0 13 chrY 26329123 26329407 -25184177 + AluSx SINE Alu 1 282 -30 258 32 0 0 chrY 26329407 26329438 -25184146 + (CA)n Simple_repeat Simple_repeat 2 32 0 1700 184 0 13 chrY 26329438 26329462 -25184122 + AluSx SINE Alu 282 305 -7 371 307 120 92 chrY 26331646 26332298 -25181286 + L1M2 LINE L1 472 1141 -5708 485 252 0 9 chrY 26333752 26333859 -25179725 + FLAM_C SINE Alu 13 118 -25 264 122 20 0 chrY 26333862 26333911 -25179673 - MER1B DNA MER1_type -13 326 277 270 108 0 135 chrY 26334075 26334149 -25179435 - MER1B DNA MER1_type -65 274 211 256 161 25 25 chrY 26334296 26334340 -25179244 + L1MA7 LINE L1 6182 6228 -63 696 214 114 68 chrY 26334340 26334620 -25178964 + AluJb SINE Alu 2 294 -8 256 161 25 25 chrY 26334620 26334656 -25178928 + L1MA7 LINE L1 6227 6262 -29 201 245 10 41 chrY 26335107 26335205 -25178379 + (TATG)n Simple_repeat Simple_repeat 2 96 0 2035 133 3 0 chrY 26336966 26337274 -25176310 - AluSc SINE Alu 0 309 1 24 0 0 0 chrY 26339284 26339308 -25174276 + AT_rich Low_complexity Low_complexity 1 24 0 1481 186 7 7 chrY 26339318 26339592 -25173992 + AluSg SINE Alu 5 278 -32 216 0 0 0 chrY 26339592 26339616 -25173968 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 30 0 0 0 chrY 26339885 26339915 -25173669 + AT_rich Low_complexity Low_complexity 1 30 0 951 262 38 31 chrY 26341013 26341303 -25172281 - AluJo SINE Alu -10 292 1 936 285 32 6 chrY 26342780 26343096 -25170488 - L1MB5 LINE L1 -13 6161 5838 1087 208 111 18 chrY 26343168 26343563 -25170021 - L1MB5 LINE L1 -495 5685 5254 1252 227 33 4 chrY 26345516 26345816 -25167768 - AluSg SINE Alu 0 308 1 1418 213 11 14 chrY 26346299 26346585 -25166999 + AluSx SINE Alu 3 287 -15 1240 228 0 44 chrY 26346643 26346963 -25166621 - AluJo SINE Alu -5 307 2 450 273 35 0 chrY 26347010 26347182 -25166402 - L1MA4 LINE L1 -124 6176 5999 233 185 0 0 chrY 26347195 26347249 -25166335 + L1MA4 LINE L1 6236 6289 -11 22 35 0 0 chrY 26347249 26347278 -25166306 + AT_rich Low_complexity Low_complexity 1 29 0 343 339 23 40 chrY 26347526 26347810 -25165774 + L1M3de LINE L1 371 658 -5995 1692 124 120 11 chrY 26347810 26348076 -25165508 - AluSg SINE Alu -15 295 1 343 339 23 40 chrY 26348076 26348133 -25165451 + L1M3de LINE L1 658 1436 -5217 1582 206 37 46 chrY 26348414 26348846 -25164738 + MSTB1 LTR MaLR 4 431 -1 1675 176 0 43 chrY 26349058 26349381 -25164203 - AluSc SINE Alu 0 309 1 546 338 54 37 chrY 26349455 26349916 -25163668 + L1M3b LINE L1 42 510 -5771 238 214 8 120 chrY 26350752 26350869 -25162715 + L1P LINE L1 3463 3566 -2580 472 271 106 7 chrY 26351190 26351341 -25162243 + FRAM SINE Alu 1 166 0 529 187 15 8 chrY 26351949 26352083 -25161501 + CT-rich Low_complexity Low_complexity 2 136 0 1304 236 0 29 chrY 26352102 26352411 -25161173 - AluSx SINE Alu -8 304 5 195 69 0 0 chrY 26352455 26352484 -25161100 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1411 210 7 0 chrY 26352490 26352771 -25160813 - AluSx SINE Alu -29 283 1 295 248 62 26 chrY 26353235 26353348 -25160236 - MLT1F LTR MaLR -37 505 389 789 58 0 0 chrY 26358656 26358759 -25154825 - L1P3 LINE L1 -622 5532 5430 2173 90 3 16 chrY 26358759 26359079 -25154505 + L1PA6 LINE L1 5837 6154 0 21 82 0 0 chrY 26360784 26360833 -25152751 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chrY 26360869 26360898 -25152686 + AT_rich Low_complexity Low_complexity 1 29 0 820 228 141 47 chrY 26362607 26362862 -25150722 + AluJo SINE Alu 11 289 -23 186 39 0 0 chrY 26363417 26363443 -25150141 + L2 LINE L2 3284 3309 -4 2623 157 29 100 chrY 26364067 26364800 -25148784 + LTR1 LTR ERV1 1 681 -104 651 162 17 0 chrY 26365182 26365299 -25148285 - MER41E LTR ERV1 -393 119 1 3563 174 42 23 chrY 26367401 26368195 -25145389 - L1PA16 LINE L1 -1 6165 5357 35 24 0 0 chrY 26368708 26368750 -25144834 + AT_rich Low_complexity Low_complexity 1 42 0 2317 109 0 3 chrY 26369747 26370051 -25143533 + AluSc SINE Alu 1 303 -6 22 35 0 0 chrY 26370710 26370739 -25142845 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrY 26371003 26371025 -25142559 + AT_rich Low_complexity Low_complexity 1 22 0 257 321 43 0 chrY 26371151 26371313 -25142271 - L1ME LINE L1 -653 5511 5343 189 314 29 29 chrY 26371750 26371820 -25141764 + MER5A DNA MER1_type 43 112 -77 225 65 0 0 chrY 26371918 26371949 -25141635 + (CAA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chrY 26373216 26373239 -25140345 + AT_rich Low_complexity Low_complexity 1 23 0 838 111 8 0 chrY 26373250 26373367 -25140217 - AluSc SINE Alu -191 118 1 1745 150 29 0 chrY 26373753 26374033 -25139551 + AluSq SINE Alu 1 288 -25 27 0 0 0 chrY 26374695 26374722 -25138862 + AT_rich Low_complexity Low_complexity 1 27 0 339 200 0 22 chrY 26374883 26374973 -25138611 - L1MA9 LINE L1 -147 6165 6078 1102 67 22 17 chrY 26376291 26376470 -25137114 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chrY 26377874 26377898 -25135686 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2021 134 13 3 chrY 26379277 26379576 -25134008 - AluY SINE Alu 0 311 10 22 35 0 0 chrY 26379963 26379992 -25133592 + AT_rich Low_complexity Low_complexity 1 29 0 1572 197 11 3 chrY 26380218 26380502 -25133082 + AluSx SINE Alu 2 287 -25 23 0 0 0 chrY 26380502 26380525 -25133059 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrY 26380610 26380639 -25132945 + AT_rich Low_complexity Low_complexity 1 29 0 52 64 0 0 chrY 26380878 26380972 -25132612 + AT_rich Low_complexity Low_complexity 1 94 0 387 0 0 0 chrY 26380983 26381026 -25132558 + (TG)n Simple_repeat Simple_repeat 2 44 0 207 364 8 8 chrY 26381886 26382007 -25131577 + (CAA)n Simple_repeat Simple_repeat 2 122 0 381 218 0 0 chrY 26382421 26382545 -25131039 + GA-rich Low_complexity Low_complexity 1 124 0 201 147 0 0 chrY 26383011 26383045 -25130539 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2048 51 0 0 chrY 26383480 26383736 -25129848 - L1PA4 LINE L1 -1 6154 5899 2646 148 62 6 chrY 26384159 26384626 -25128958 + MER1A DNA MER1_type 31 523 -6 195 42 0 0 chrY 26386051 26386075 -25127509 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2878 155 29 39 chrY 26386644 26387206 -25126378 + LTR6A LTR ERV1 9 564 0 3060 109 15 0 chrY 26387804 26388617 -25124967 + L1P2 LINE L1 4909 5734 -420 12817 163 3 7 chrY 26388617 26390852 -25122732 + HERVK22 LTR ERVK 46 2271 -4566 1796 183 30 158 chrY 26390852 26391492 -25122092 - LTR6A LTR ERV1 0 564 1 12188 162 2 12 chrY 26391492 26394047 -25119537 + HERVK22 LTR ERVK 2267 4773 -2064 2491 180 15 26 chrY 26394046 26394657 -25118927 + pTR5 LTR ERV1 742 1345 -1093 * 4118 129 15 128 chrY 26394672 26395599 -25117985 + LTR12 LTR ERV1 5 826 0 7538 163 9 13 chrY 26395599 26397561 -25116023 + HERVK22 LTR ERVK 4770 6835 -2 2897 187 25 3 chrY 26397562 26398130 -25115454 + LTR22 LTR ERVK 1 580 0 299 234 0 27 chrY 26398528 26398639 -25114945 + L1ME LINE L1 681 788 -5282 578 232 7 21 chrY 26398755 26398897 -25114687 + MLT1D LTR MaLR 301 440 -65 417 321 95 34 chrY 26399156 26399452 -25114132 - L2 LINE L2 -583 2731 2418 243 0 0 0 chrY 26399591 26399618 -25113966 + (A)n Simple_repeat Simple_repeat 1 27 0 214 331 91 0 chrY 26399855 26399976 -25113608 + MIR SINE MIR 53 184 -78 36 53 0 0 chrY 26400575 26400632 -25112952 + AT_rich Low_complexity Low_complexity 1 57 0 1219 169 16 93 chrY 26400799 26401112 -25112472 - MER52C LTR ERV1 0 1278 990 1102 96 0 0 chrY 26401213 26401359 -25112225 - AluY SINE Alu -3 308 163 1826 185 0 3 chrY 26401540 26401853 -25111731 + AluSx SINE Alu 1 312 0 10117 131 8 0 chrY 26401854 26404362 -25109222 + L1PA7 LINE L1 3596 6146 -8 377 225 70 7 chrY 26404948 26405090 -25108494 + L1M4 LINE L1 4457 4607 -1539 2045 140 0 0 chrY 26406566 26406859 -25106725 - AluSp SINE Alu -20 293 1 384 22 0 0 chrY 26410839 26410884 -25102700 + (CA)n Simple_repeat Simple_repeat 2 46 0 1997 113 11 3 chrY 26412141 26412424 -25101160 + AluSq SINE Alu 9 293 -20 438 275 74 35 chrY 26413230 26413459 -25100125 - MIR SINE MIR -9 253 16 21 0 0 0 chrY 26415494 26415515 -25098069 + AT_rich Low_complexity Low_complexity 1 21 0 328 247 11 11 chrY 26416169 26416262 -25097322 + MER94 DNA DNA 8 100 -34 21 36 0 0 chrY 26417349 26417377 -25096207 + AT_rich Low_complexity Low_complexity 1 28 0 1709 129 0 110 chrY 26418200 26418537 -25095047 + AluSx SINE Alu 2 303 0 598 144 0 0 chrY 26420186 26420276 -25093308 - AluJ/FLAM SINE Alu -222 90 1 613 143 0 0 chrY 26420500 26420591 -25092993 - FLAM_C SINE Alu -20 123 33 950 45 0 30 chrY 26420591 26420724 -25092860 + L1PA4 LINE L1 6027 6155 0 1317 184 36 18 chrY 26421061 26421338 -25092246 - AluJo SINE Alu -30 282 1 1029 113 0 0 chrY 26421620 26421753 -25091831 - AluJb SINE Alu -12 300 168 1756 133 8 16 chrY 26421753 26422008 -25091576 - AluJb SINE Alu -36 276 24 2320 101 0 0 chrY 26422305 26422602 -25090982 - AluSx SINE Alu -15 297 1 22 0 0 0 chrY 26422849 26422871 -25090713 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrY 26423079 26423105 -25090479 + AT_rich Low_complexity Low_complexity 1 26 0 3920 77 34 2 chrY 26423128 26423664 -25089920 + MER41A LTR ERV1 1 553 -1 236 314 0 0 chrY 26423915 26424001 -25089583 - L1 LINE L1 -1332 4814 4729 331 306 77 55 chrY 26424622 26424805 -25088779 + L2 LINE L2 3059 3245 -27 303 418 0 7 chrY 26424796 26424949 -25088635 - L2 LINE L2 -602 2712 2561 * 195 139 0 0 chrY 26425098 26425134 -25088450 + (A)n Simple_repeat Simple_repeat 1 36 0 407 356 0 12 chrY 26426193 26426353 -25087231 - MER5B DNA MER1_type -20 158 1 1732 173 23 13 chrY 26426676 26426977 -25086607 + AluJb SINE Alu 1 304 -8 218 341 49 12 chrY 26427492 26427574 -25086010 + L2 LINE L2 3225 3309 -4 259 213 98 0 chrY 26427608 26427669 -25085915 + MIR SINE MIR 45 111 -97 2049 141 7 0 chrY 26427784 26428083 -25085501 + AluSx SINE Alu 1 301 -11 29 0 0 0 chrY 26429383 26429412 -25084172 + AT_rich Low_complexity Low_complexity 1 29 0 1535 227 136 22 chrY 26431826 26432376 -25081208 - MLT1E2 LTR MaLR -3 623 11 235 313 48 82 chrY 26434075 26434222 -25079362 - L2 LINE L2 -3 3269 3128 2393 78 10 0 chrY 26434256 26434552 -25079032 + AluY SINE Alu 1 299 -12 306 0 0 0 chrY 26435137 26435171 -25078413 + (TA)n Simple_repeat Simple_repeat 1 34 0 288 0 0 0 chrY 26435170 26435202 -25078382 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 640 179 0 9 chrY 26435215 26435327 -25078257 - FRAM SINE Alu -61 115 5 1441 154 150 11 chrY 26435357 26435617 -25077967 + AluJo SINE Alu 1 296 -6 589 269 126 14 chrY 26435798 26436021 -25077563 + MIR SINE MIR 12 259 -3 629 341 100 55 chrY 26437082 26437317 -25076267 + L2 LINE L2 2154 2377 -937 1650 197 14 0 chrY 26437317 26437607 -25075977 - AluJo SINE Alu -15 297 4 629 341 100 55 chrY 26437607 26438099 -25075485 + L2 LINE L2 2377 2914 -400 377 327 62 0 chrY 26438278 26438391 -25075193 + L2 LINE L2 3137 3256 -16 12098 31 0 0 chrY 26438613 26440821 -25072763 + L1PA2 LINE L1 3947 6155 0 2044 122 7 7 chrY 26442399 26442702 -25070882 - AluSq SINE Alu -10 303 1 22 0 0 0 chrY 26442754 26442776 -25070808 + AT_rich Low_complexity Low_complexity 1 22 0 613 264 32 7 chrY 26443697 26443852 -25069732 + MIR SINE MIR 28 186 -76 203 133 0 0 chrY 26445434 26445464 -25068120 + (CA)n Simple_repeat Simple_repeat 1 30 0 2056 128 0 14 chrY 26447865 26448183 -25065401 + AluSq SINE Alu 2 313 0 518 170 30 10 chrY 26448681 26448781 -25064803 + Tigger3b DNA MER2_type 1 102 -1129 2351 91 0 19 chrY 26448787 26449096 -25064488 - AluY SINE Alu -8 303 1 5063 116 69 9 chrY 26449103 26450005 -25063579 + Tigger3b DNA MER2_type 274 1229 -2 356 253 0 0 chrY 26450007 26450086 -25063498 - MIR SINE MIR -114 148 70 25 0 0 0 chrY 26450796 26450821 -25062763 + AT_rich Low_complexity Low_complexity 1 25 0 293 320 158 25 chrY 26450931 26451081 -25062503 + MIR SINE MIR 32 217 -45 369 0 0 0 chrY 26451081 26451122 -25062462 + (CA)n Simple_repeat Simple_repeat 2 42 0 293 320 158 25 chrY 26451122 26451174 -25062410 + MIR SINE MIR 217 261 -1 3644 219 96 12 chrY 26451506 26452535 -25061049 + L1MC4 LINE L1 6459 7574 -468 1240 218 48 0 chrY 26452535 26452655 -25060929 + AluJo SINE Alu 1 114 -198 293 0 0 26 chrY 26452655 26452693 -25060891 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1240 218 48 0 chrY 26452693 26452824 -25060760 + AluJo SINE Alu 114 264 -48 216 0 0 0 chrY 26452824 26452848 -25060736 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 2208 95 3 0 chrY 26452983 26453266 -25060318 + AluSp SINE Alu 17 300 -13 233 209 75 0 chrY 26453280 26453347 -25060237 + L1MC4 LINE L1 7965 8036 -6 320 193 79 35 chrY 26453512 26453626 -25059958 - MER112 DNA MER1_type -20 240 122 4481 99 19 0 chrY 26453648 26454271 -25059313 + MER41B LTR ERV1 1 635 0 22 0 0 0 chrY 26454547 26454569 -25059015 + AT_rich Low_complexity Low_complexity 1 22 0 235 318 55 0 chrY 26454581 26454691 -25058893 - L2 LINE L2 -1 3312 3197 421 280 96 17 chrY 26455795 26455967 -25057617 + MER20B DNA MER1_type 16 202 -17 21 57 0 0 chrY 26456293 26456328 -25057256 + AT_rich Low_complexity Low_complexity 1 35 0 218 70 70 0 chrY 26457365 26457408 -25056176 + A-rich Low_complexity Low_complexity 2 47 0 334 288 27 62 chrY 26458318 26458610 -25054974 - L1MEc LINE L1 -2526 3603 3322 717 244 72 23 chrY 26458954 26459302 -25054282 - L1MEc LINE L1 -2907 3222 2858 4678 240 171 57 chrY 26459346 26460130 -25053454 + L2 LINE L2 811 1505 -1808 2026 113 14 14 chrY 26460130 26460423 -25053161 + AluSx SINE Alu 1 293 -19 4678 240 171 57 chrY 26460423 26460939 -25052645 + L2 LINE L2 1505 1961 -1352 2090 122 3 10 chrY 26460939 26461243 -25052341 + AluSx SINE Alu 1 302 -10 3408 93 6 8 chrY 26461253 26461745 -25051839 + L1PB1 LINE L1 5659 6149 -2 4678 240 171 57 chrY 26461745 26462118 -25051466 + L2 LINE L2 1968 2297 -1016 2336 98 0 0 chrY 26462118 26462414 -25051170 + AluSg SINE Alu 5 300 -10 4678 240 171 57 chrY 26462414 26462994 -25050590 + L2 LINE L2 2297 3313 0 345 265 44 6 chrY 26463040 26463221 -25050363 - L1MEc LINE L1 -3487 2642 2455 26 50 0 0 chrY 26463682 26463722 -25049862 + AT_rich Low_complexity Low_complexity 1 40 0 631 331 74 23 chrY 26463851 26464241 -25049343 - L1MEc LINE L1 -4605 1705 1296 293 223 71 93 chrY 26464255 26464578 -25049006 - L1MEc LINE L1 -4886 1233 918 22 35 0 0 chrY 26465291 26465320 -25048264 + AT_rich Low_complexity Low_complexity 1 29 0 560 330 37 21 chrY 26465789 26465977 -25047607 + MIR3 SINE MIR 12 202 -6 1939 155 0 23 chrY 26466549 26466858 -25046726 + AluSx SINE Alu 1 302 -10 346 252 162 26 chrY 26467397 26467663 -25045921 - L1ME4a LINE L1 -31 6090 5789 293 260 10 10 chrY 26467716 26467812 -25045772 - L1ME4a LINE L1 -315 5806 5711 247 164 269 0 chrY 26467827 26467894 -25045690 + L2 LINE L2 3225 3309 -4 342 284 54 64 chrY 26468066 26468186 -25045398 - L1ME4a LINE L1 -566 5555 5436 2130 122 0 0 chrY 26468186 26468482 -25045102 + AluSx SINE Alu 1 296 -16 342 284 54 64 chrY 26468482 26468565 -25045019 - L1ME4a LINE L1 -685 5436 5354 863 236 74 0 chrY 26469920 26470136 -25043448 - MIR SINE MIR -8 254 23 1650 166 36 26 chrY 26470241 26470549 -25043035 + AluJb SINE Alu 1 311 -1 3782 82 8 0 chrY 26470803 26471313 -25042271 - L1PA14 LINE L1 -10 6151 5638 2393 163 12 8 chrY 26471313 26471782 -25041802 + L1P4 LINE L1 4791 5264 -882 998 100 100 6 chrY 26471882 26471940 -25041644 + L1P4 LINE L1 5427 5478 -683 257 48 48 0 chrY 26471940 26471982 -25041602 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 998 100 100 6 chrY 26471982 26472093 -25041491 + L1P4 LINE L1 5478 5612 -549 641 306 14 9 chrY 26472427 26472649 -25040935 + L2 LINE L2 2196 2418 -896 293 326 66 94 chrY 26472749 26472765 -25040819 - L2 LINE L2 -73 3199 3184 1892 148 3 0 chrY 26472765 26473048 -25040536 + AluSq SINE Alu 1 284 -29 293 326 66 94 chrY 26473048 26473319 -25040265 - L2 LINE L2 -88 3184 2920 641 268 34 55 chrY 26473360 26473595 -25039989 - MIR SINE MIR -13 249 20 712 311 38 13 chrY 26473871 26474109 -25039475 + L2 LINE L2 2090 2333 -981 774 157 0 0 chrY 26474136 26474251 -25039333 + AluSp/q SINE Alu 175 289 -24 2599 87 5 33 chrY 26474251 26474514 -25039070 + L1PB2 LINE L1 5769 6019 -132 2322 85 0 3 chrY 26474514 26474807 -25038777 + AluY SINE Alu 2 293 -18 2599 87 5 33 chrY 26474807 26474933 -25038651 + L1PB2 LINE L1 6019 6147 -4 200 187 22 44 chrY 26474970 26475061 -25038523 + (TTATA)n Simple_repeat Simple_repeat 1 89 0 202 110 22 66 chrY 26475064 26475155 -25038429 + (TATAA)n Simple_repeat Simple_repeat 3 89 0 496 241 52 9 chrY 26475228 26475344 -25038240 + L2 LINE L2 3192 3312 -1 221 261 70 108 chrY 26475570 26475727 -25037857 - MER5A DNA MER1_type -9 180 30 1190 174 9 27 chrY 26476909 26477133 -25036451 + MER58A DNA MER1_type 1 220 -4 734 274 114 19 chrY 26478525 26479175 -25034409 - MER20B DNA MER1_type -31 752 1 890 208 73 0 chrY 26481130 26481322 -25032262 - MIR SINE MIR -56 206 1 382 255 55 48 chrY 26481390 26481535 -25032049 + MIR3 SINE MIR 63 208 0 1975 127 10 10 chrY 26481621 26481912 -25031672 - AluSg SINE Alu -19 291 1 2588 248 95 38 chrY 26482355 26483526 -25030058 + L2 LINE L2 2072 3308 -5 837 156 0 0 chrY 26484415 26484582 -25029002 + (CACTC)n Simple_repeat Simple_repeat 5 171 0 677 203 6 0 chrY 26484600 26485256 -25028328 + (CATTC)n Satellite Satellite 1 660 0 669 214 0 0 chrY 26485292 26485619 -25027965 + (CACTC)n Simple_repeat Simple_repeat 1 327 0 707 213 11 0 chrY 26485627 26485901 -25027683 + (CATTC)n Satellite Satellite 1 277 0 216 184 0 0 chrY 26485988 26486037 -25027547 + (ATTCG)n Simple_repeat Simple_repeat 2 50 0 * 699 196 0 0 chrY 26486035 26486208 -25027376 + (CACTC)n Simple_repeat Simple_repeat 4 176 0 338 134 15 0 chrY 26486242 26486309 -25027275 + (CACTC)n Simple_repeat Simple_repeat 1 68 0 267 297 8 0 chrY 26486311 26486429 -25027155 + (CATTC)n Simple_repeat Simple_repeat 1 119 0 * 279 261 11 0 chrY 26486341 26486433 -25027151 + (ATTCG)n Simple_repeat Simple_repeat 4 96 0 822 167 0 0 chrY 26486435 26486615 -25026969 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 400 206 0 22 chrY 26486651 26486835 -25026749 + (CATTC)n Simple_repeat Simple_repeat 1 180 0 729 181 0 0 chrY 26486860 26487037 -25026547 + (CACTC)n Simple_repeat Simple_repeat 1 177 0 328 237 12 0 chrY 26487040 26487213 -25026371 + (CATTC)n Satellite Satellite 1 175 0 996 128 0 0 chrY 26487234 26487413 -25026171 + (CATTC)n Satellite Satellite 2 180 0 193 150 67 0 chrY 26487429 26487489 -25026095 + HSATII Satellite Satellite 47 110 -60 246 62 0 0 chrY 26487496 26487528 -25026056 + (ATTTG)n Simple_repeat Simple_repeat 3 34 0 780 168 0 0 chrY 26487560 26487733 -25025851 + (CATTC)n Satellite Satellite 2 174 0 837 187 0 0 chrY 26487753 26488110 -25025474 + (CATTC)n Satellite Satellite 1 357 0 202 195 0 0 chrY 26488112 26488153 -25025431 + (ATTCG)n Simple_repeat Simple_repeat 4 44 0 780 186 0 0 chrY 26488153 26488325 -25025259 + (CACTC)n Simple_repeat Simple_repeat 4 175 0 479 206 6 0 chrY 26488332 26488492 -25025092 + (CATTC)n Satellite Satellite 3 163 0 703 169 11 0 chrY 26488515 26488692 -25024892 + (CATTC)n Satellite Satellite 2 180 0 305 242 7 0 chrY 26488722 26488871 -25024713 + (ATTCG)n Simple_repeat Simple_repeat 2 151 0 209 200 0 0 chrY 26488871 26488916 -25024668 + (CAGTC)n Simple_repeat Simple_repeat 1 45 0 606 207 0 0 chrY 26489337 26489516 -25024068 + (GAATG)n Satellite Satellite 2 180 0 564 210 0 0 chrY 26489542 26489709 -25023875 + (GAATG)n Satellite Satellite 4 170 0 822 175 0 0 chrY 26489719 26489896 -25023688 + (GAGTG)n Simple_repeat Simple_repeat 2 178 0 211 71 0 0 chrY 26489908 26489936 -25023648 + (GAATG)n Simple_repeat Simple_repeat 2 29 0 804 192 0 0 chrY 26489937 26490199 -25023385 + (GAGTG)n Simple_repeat Simple_repeat 1 262 0 569 199 6 0 chrY 26490242 26490403 -25023181 + (GAATG)n Simple_repeat Simple_repeat 4 165 0 * 804 178 0 0 chrY 26490396 26490576 -25023008 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 263 224 0 0 chrY 26490576 26490634 -25022950 + (CGAAT)n Simple_repeat Simple_repeat 2 59 0 274 111 63 0 chrY 26490637 26490700 -25022884 - HSATII Satellite Satellite -57 113 47 795 179 0 0 chrY 26490707 26490886 -25022698 + (GAGTG)n Simple_repeat Simple_repeat 1 179 0 1071 119 0 0 chrY 26490900 26491076 -25022508 + (GAATG)n Simple_repeat Simple_repeat 1 176 0 279 54 0 0 chrY 26491102 26491139 -25022445 + (CAAAT)n Simple_repeat Simple_repeat 3 39 0 758 182 8 0 chrY 26491141 26491398 -25022186 + (GAATG)n Satellite Satellite 1 259 0 308 244 8 0 chrY 26491379 26491506 -25022078 + (CGAAT)n Simple_repeat Simple_repeat 2 129 0 * 767 169 6 0 chrY 26491539 26491716 -25021868 + (GAATG)n Simple_repeat Simple_repeat 2 179 0 254 260 13 0 chrY 26491723 26491800 -25021784 + (CAAAT)n Simple_repeat Simple_repeat 3 80 0 698 207 3 0 chrY 26491816 26492129 -25021455 + (GAATG)n Satellite Satellite 1 314 0 756 181 0 0 chrY 26492181 26492400 -25021184 + (GAGTG)n Simple_repeat Simple_repeat 1 219 0 572 190 0 22 chrY 26492400 26492584 -25021000 + (GAATG)n Satellite Satellite 1 180 0 618 207 0 0 chrY 26492608 26492787 -25020797 + (GAATG)n Satellite Satellite 2 180 0 287 194 11 0 chrY 26492768 26492861 -25020723 + (CGAAT)n Simple_repeat Simple_repeat 2 95 0 * 465 238 0 0 chrY 26492918 26493082 -25020502 + (GAGTG)n Simple_repeat Simple_repeat 1 164 0 1005 128 0 0 chrY 26493082 26493262 -25020322 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 242 206 14 0 chrY 26493272 26493345 -25020239 + (CGAAT)n Simple_repeat Simple_repeat 2 75 0 366 279 0 0 chrY 26493351 26493462 -25020122 + (GAATG)n Simple_repeat Simple_repeat 4 114 0 720 186 0 0 chrY 26493463 26493640 -25019944 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 842 195 6 0 chrY 26493645 26493983 -25019601 + (GAATG)n Satellite Satellite 1 340 0 200 226 11 0 chrY 26493963 26494056 -25019528 + (CGAAT)n Simple_repeat Simple_repeat 2 95 0 * 452 206 7 0 chrY 26494078 26494219 -25019365 + (GAATG)n Satellite Satellite 3 144 0 597 204 0 0 chrY 26494269 26494426 -25019158 + (GAATG)n Satellite Satellite 1 157 0 806 153 6 0 chrY 26494467 26494644 -25018940 + (GAATG)n Satellite Satellite 2 179 0 705 198 6 0 chrY 26494670 26494998 -25018586 + (GAATG)n Satellite Satellite 1 330 0 975 186 0 0 chrY 26495013 26495367 -25018217 + (GAATG)n Satellite Satellite 1 354 0 283 222 17 0 chrY 26495373 26495490 -25018094 + (CGAAT)n Simple_repeat Simple_repeat 2 120 0 780 178 0 0 chrY 26495536 26495716 -25017868 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 470 207 6 0 chrY 26495726 26495905 -25017679 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 307 179 0 0 chrY 26495906 26495962 -25017622 + (GAGTG)n Simple_repeat Simple_repeat 4 59 0 906 148 0 0 chrY 26495975 26496151 -25017433 + (GAGTG)n Simple_repeat Simple_repeat 5 180 0 278 297 8 0 chrY 26496156 26496274 -25017310 + (GAATG)n Simple_repeat Simple_repeat 1 119 0 317 136 15 0 chrY 26496277 26496343 -25017241 + (GAGTG)n Simple_repeat Simple_repeat 1 67 0 714 193 0 0 chrY 26496380 26496556 -25017028 + (GAGTG)n Simple_repeat Simple_repeat 2 177 0 180 149 90 0 chrY 26496564 26496631 -25016953 - HSATII Satellite Satellite -53 117 45 675 217 4 0 chrY 26496678 26496916 -25016668 + (GAATG)n Satellite Satellite 1 239 0 495 221 0 0 chrY 26496930 26497088 -25016496 + (GAATG)n Satellite Satellite 2 159 0 789 165 0 0 chrY 26497120 26497284 -25016300 + (GAGTG)n Simple_repeat Simple_repeat 1 164 0 644 187 4 0 chrY 26497312 26497587 -25015997 + (GAATG)n Satellite Satellite 1 276 0 512 200 7 0 chrY 26497630 26497785 -25015799 + (GAATG)n Satellite Satellite 2 157 0 924 193 0 0 chrY 26497821 26498170 -25015414 + (GAATG)n Satellite Satellite 1 349 0 262 231 17 0 chrY 26498176 26498293 -25015291 + (CGAAT)n Simple_repeat Simple_repeat 2 120 0 294 239 0 0 chrY 26498299 26498366 -25015218 + (GAATG)n Simple_repeat Simple_repeat 4 70 0 750 192 0 0 chrY 26498367 26498611 -25014973 + (GAGTG)n Simple_repeat Simple_repeat 1 244 0 228 267 11 0 chrY 26498611 26498701 -25014883 + (CGAAT)n Simple_repeat Simple_repeat 4 94 0 611 204 0 6 chrY 26498708 26498889 -25014695 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 210 216 0 0 chrY 26498897 26498971 -25014613 + (AATTG)n Simple_repeat Simple_repeat 4 77 0 456 280 12 0 chrY 26498979 26499147 -25014437 + (GAATG)n Simple_repeat Simple_repeat 5 174 0 578 197 0 27 chrY 26499151 26499334 -25014250 + (GAGTG)n Simple_repeat Simple_repeat 3 180 0 299 354 11 0 chrY 26499336 26499514 -25014070 + (GAATG)n Satellite Satellite 1 180 0 834 176 4 0 chrY 26499535 26499765 -25013819 + (GAATG)n Satellite Satellite 1 231 0 441 234 0 0 chrY 26499779 26499937 -25013647 + (GAATG)n Satellite Satellite 2 159 0 768 171 0 0 chrY 26499969 26500133 -25013451 + (GAGTG)n Simple_repeat Simple_repeat 1 164 0 456 99 0 0 chrY 26500161 26500232 -25013352 + (GAATG)n Simple_repeat Simple_repeat 2 72 0 936 186 0 3 chrY 26500410 26500760 -25012824 + (GAATG)n Satellite Satellite 1 349 0 334 210 17 0 chrY 26500766 26500885 -25012699 + (CGAAT)n Simple_repeat Simple_repeat 2 122 0 672 186 0 0 chrY 26500920 26501087 -25012497 + (GAGTG)n Simple_repeat Simple_repeat 3 169 0 423 224 0 0 chrY 26501099 26501242 -25012342 + (GAATG)n Simple_repeat Simple_repeat 3 145 0 945 136 0 0 chrY 26501254 26501383 -25012201 + (GAGTG)n Simple_repeat Simple_repeat 1 306 0 945 136 0 0 chrY 26501383 26501560 -25012024 + (GAGTG)n Simple_repeat Simple_repeat 4 180 0 326 134 15 0 chrY 26501684 26501751 -25011833 + (GAGTG)n Simple_repeat Simple_repeat 1 68 0 582 216 0 0 chrY 26501787 26501958 -25011626 + (GAGTG)n Simple_repeat Simple_repeat 4 174 0 195 204 0 0 chrY 26501951 26502005 -25011579 + (AATTG)n Simple_repeat Simple_repeat 3 56 0 * 602 202 6 0 chrY 26502087 26502255 -25011329 + (GAATG)n Simple_repeat Simple_repeat 4 172 0 212 250 17 0 chrY 26502256 26502316 -25011268 + (CGAAT)n Simple_repeat Simple_repeat 5 65 0 426 216 0 0 chrY 26502338 26502463 -25011121 + (GAATG)n Simple_repeat Simple_repeat 5 129 0 714 183 0 0 chrY 26502528 26502692 -25010892 + (GAGTG)n Simple_repeat Simple_repeat 1 164 0 432 82 0 0 chrY 26502720 26502781 -25010803 + (GAATG)n Satellite Satellite 2 62 0 637 185 11 0 chrY 26502812 26502990 -25010594 + (GAATG)n Satellite Satellite 1 180 0 236 167 0 0 chrY 26503001 26503043 -25010541 + (GAGTG)n Simple_repeat Simple_repeat 3 44 0 572 200 6 0 chrY 26503044 26503214 -25010370 + (GAATG)n Satellite Satellite 1 171 0 975 186 0 0 chrY 26503254 26503608 -25009976 + (GAATG)n Satellite Satellite 1 354 0 205 239 17 0 chrY 26503614 26503731 -25009853 + (CGAAT)n Simple_repeat Simple_repeat 2 120 0 278 254 0 0 chrY 26503737 26503804 -25009780 + (GAATG)n Simple_repeat Simple_repeat 4 70 0 777 178 0 0 chrY 26503805 26504049 -25009535 + (GAGTG)n Simple_repeat Simple_repeat 1 244 0 237 197 0 0 chrY 26504125 26504191 -25009393 + (GAATG)n Simple_repeat Simple_repeat 1 66 0 906 144 0 0 chrY 26504226 26504406 -25009178 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 200 175 16 0 chrY 26504426 26504489 -25009095 + (GAATG)n Simple_repeat Simple_repeat 2 65 0 284 152 15 0 chrY 26504532 26504598 -25008986 + (GAGTG)n Simple_repeat Simple_repeat 2 68 0 741 185 0 0 chrY 26504633 26504806 -25008778 + (GAGTG)n Simple_repeat Simple_repeat 4 176 0 332 288 16 0 chrY 26504806 26504931 -25008653 + (CAAAT)n Simple_repeat Simple_repeat 4 130 0 642 228 8 0 chrY 26504935 26505205 -25008379 + (GAATG)n Satellite Satellite 1 272 0 441 198 0 0 chrY 26505223 26505344 -25008240 + (GAATG)n Satellite Satellite 2 122 0 750 173 0 0 chrY 26505378 26505540 -25008044 + (GAGTG)n Simple_repeat Simple_repeat 1 162 0 975 199 4 0 chrY 26505576 26506461 -25007123 + (GAATG)n Satellite Satellite 1 888 0 304 214 17 0 chrY 26506467 26506584 -25007000 + (CGAAT)n Simple_repeat Simple_repeat 2 120 0 294 239 0 0 chrY 26506590 26506657 -25006927 + (GAATG)n Simple_repeat Simple_repeat 4 70 0 750 175 0 0 chrY 26506658 26506835 -25006749 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 183 204 0 0 chrY 26506858 26506902 -25006682 + (GAGTG)n Simple_repeat Simple_repeat 4 47 0 279 193 0 0 chrY 26506955 26507043 -25006541 + (GAATG)n Simple_repeat Simple_repeat 2 89 0 909 150 0 0 chrY 26507079 26507259 -25006325 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 279 261 11 0 chrY 26507261 26507383 -25006201 + (CGAAT)n Simple_repeat Simple_repeat 1 123 0 338 134 15 0 chrY 26507385 26507452 -25006132 + (GAGTG)n Simple_repeat Simple_repeat 1 68 0 612 214 0 0 chrY 26507486 26507659 -25005925 + (GAGTG)n Simple_repeat Simple_repeat 4 176 0 183 204 0 0 chrY 26507657 26507706 -25005878 + (CGAAT)n Simple_repeat Simple_repeat 2 50 0 * 735 216 8 0 chrY 26507794 26508069 -25005515 + (GAATG)n Satellite Satellite 1 277 0 453 198 0 0 chrY 26508087 26508208 -25005376 + (GAATG)n Satellite Satellite 2 122 0 636 195 0 0 chrY 26508240 26508404 -25005180 + (GAGTG)n Simple_repeat Simple_repeat 1 164 0 569 199 6 0 chrY 26508440 26508616 -25004968 + (GAATG)n Satellite Satellite 3 179 0 596 204 6 0 chrY 26508638 26508957 -25004627 + (GAATG)n Satellite Satellite 1 321 0 873 191 0 0 chrY 26508971 26509310 -25004274 + (GAATG)n Satellite Satellite 1 339 0 546 207 0 0 chrY 26509314 26509478 -25004106 + (GAGTG)n Simple_repeat Simple_repeat 4 167 0 198 186 21 10 chrY 26509596 26509693 -25003891 + (GAATG)n Simple_repeat Simple_repeat 2 99 0 317 149 15 0 chrY 26509736 26509803 -25003781 + (GAGTG)n Simple_repeat Simple_repeat 1 68 0 666 202 0 0 chrY 26509837 26510010 -25003574 + (GAGTG)n Simple_repeat Simple_repeat 4 176 0 183 204 0 0 chrY 26510008 26510057 -25003527 + (CGAAT)n Simple_repeat Simple_repeat 2 50 0 * 705 221 8 0 chrY 26510144 26510414 -25003170 + (GAATG)n Satellite Satellite 1 272 0 441 198 0 0 chrY 26510432 26510553 -25003031 + (GAATG)n Satellite Satellite 2 122 0 696 202 0 0 chrY 26510554 26510809 -25002775 + (GAGTG)n Simple_repeat Simple_repeat 1 255 0 * 704 168 6 0 chrY 26510785 26510958 -25002626 + (GAATG)n Simple_repeat Simple_repeat 1 174 0 563 215 6 0 chrY 26510959 26511136 -25002448 + (GAGTG)n Simple_repeat Simple_repeat 2 179 0 * 614 185 12 0 chrY 26511115 26511288 -25002296 + (GAATG)n Satellite Satellite 3 177 0 996 184 0 0 chrY 26511315 26511669 -25001915 + (GAATG)n Satellite Satellite 1 354 0 242 206 14 0 chrY 26511675 26511748 -25001836 + (CGAAT)n Simple_repeat Simple_repeat 2 75 0 3706 144 43 0 chrY 26512410 26513008 -25000576 - L1MA5 LINE L1 -4 6296 5673 231 114 0 0 chrY 26513009 26513053 -25000531 + (GA)n Simple_repeat Simple_repeat 2 45 0 254 105 0 0 chrY 26513066 26513104 -25000480 - tRNA-Glu-GAG tRNA tRNA -37 38 1 1784 114 11 11 chrY 26513109 26513381 -25000203 - L1MA5 LINE L1 -618 5682 5411 2071 145 0 0 chrY 26513715 26514012 -24999572 + AluJb SINE Alu 1 297 -15 397 193 0 13 chrY 26514039 26514127 -24999457 - L1ME2 LINE L1 -153 6011 5926 710 200 35 0 chrY 26514127 26514272 -24999312 + L1ME2 LINE L1 6015 6164 0 252 0 0 0 chrY 26516699 26516727 -24996857 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 23 33 0 0 chrY 26516778 26516808 -24996776 + AT_rich Low_complexity Low_complexity 1 30 0 332 245 31 41 chrY 26517308 26517406 -24996178 - L2 LINE L2 -1 3271 3175 806 119 0 0 chrY 26518509 26518618 -24994966 - AluSg/x SINE Alu -12 297 189 735 273 65 14 chrY 26518806 26519022 -24994562 + MIR SINE MIR 32 258 -4 555 246 8 8 chrY 26519112 26519242 -24994342 + MER94 DNA DNA 5 134 0 1124 224 27 0 chrY 26519376 26519599 -24993985 + MIR SINE MIR 12 240 -22 214 226 54 131 chrY 26521668 26521752 -24991832 - L2 LINE L2 0 3313 3224 4098 138 57 11 chrY 26521752 26521789 -24991795 + L1MB3 LINE L1 5450 5484 -699 1911 141 4 0 chrY 26521789 26522058 -24991526 + AluSq SINE Alu 1 270 -43 180 0 0 0 chrY 26522059 26522079 -24991505 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4098 138 57 11 chrY 26522079 26522741 -24990843 + L1MB3 LINE L1 5483 6183 0 214 226 54 131 chrY 26522741 26522824 -24990760 - L2 LINE L2 -89 3224 3159 184 322 47 40 chrY 26522920 26523069 -24990515 + L2 LINE L2 1948 2097 -1217 196 300 36 130 chrY 26523100 26523323 -24990261 + L2 LINE L2 2553 2754 -560 3122 136 95 9 chrY 26523340 26523898 -24989686 - L1MB7 LINE L1 -9 6175 5570 1673 161 13 51 chrY 26524140 26524456 -24989128 - AluSx SINE Alu -8 304 1 180 77 0 0 chrY 26524456 26524482 -24989102 + (TG)n Simple_repeat Simple_repeat 2 27 0 40782 46 2 2 chrY 26524528 26529472 -24984112 + L1P LINE L1 8 4948 -1198 1586 169 12 39 chrY 26529811 26530264 -24983320 + MER44D DNA MER2_type 1 572 -1915 2162 122 10 0 chrY 26530264 26530568 -24983016 + AluSq SINE Alu 7 313 0 1586 169 12 39 chrY 26530568 26530602 -24982982 + MER44D DNA MER2_type 572 605 0 2005 260 59 53 chrY 26530625 26531351 -24982233 - L1M4 LINE L1 -1916 4230 3497 1852 166 3 10 chrY 26531351 26531652 -24981932 - AluJo SINE Alu -13 299 1 2005 260 59 53 chrY 26531652 26531828 -24981756 - L1M4 LINE L1 -2649 3497 3323 709 161 62 31 chrY 26531831 26531993 -24981591 - Charlie1 DNA MER1_type 0 2761 2595 1725 180 0 0 chrY 26531995 26532307 -24981277 + AluJb SINE Alu 1 312 0 1272 303 58 39 chrY 26532326 26533239 -24980345 + L1M2c LINE L1 401 1740 -5826 1816 243 56 19 chrY 26533324 26534453 -24979131 + L1M2c LINE L1 2790 3959 -3606 823 213 134 24 chrY 26534453 26534707 -24978877 + LTR10A LTR ERV1 1 282 -327 581 108 0 0 chrY 26534747 26534849 -24978735 - BaEV-int LTR ERV1 -4935 1714 1613 432 139 0 14 chrY 26534850 26534922 -24978662 + AluS SINE Alu 228 298 -14 5046 156 21 22 chrY 26534926 26536602 -24976982 + L1MA6 LINE L1 4615 6293 -7 2990 162 86 44 chrY 26536614 26536946 -24976638 - Charlie1 DNA MER1_type -157 2604 2287 2006 121 32 63 chrY 26536946 26537294 -24976290 + MER1B DNA MER1_type 1 337 0 2990 162 86 44 chrY 26537294 26537771 -24975813 - Charlie1 DNA MER1_type -474 2287 1761 362 268 120 34 chrY 26537779 26538195 -24975389 - L1MEc LINE L1 -4984 1221 808 887 179 50 17 chrY 26538303 26538482 -24975102 - MER5A DNA MER1_type -1 188 4 261 237 42 25 chrY 26538780 26538898 -24974686 - L1MEc LINE L1 -5901 304 185 319 252 43 43 chrY 26539453 26539592 -24973992 - L1ME4a LINE L1 -57 6064 5926 23 33 0 0 chrY 26539666 26539696 -24973888 + AT_rich Low_complexity Low_complexity 1 30 0 489 164 18 9 chrY 26539895 26540063 -24973521 + MER58A DNA MER1_type 5 223 -1 685 214 0 7 chrY 26540511 26540651 -24972933 + FRAM SINE Alu 37 175 -1 563 286 43 73 chrY 26540751 26540985 -24972599 + MIR SINE MIR 4 230 -32 2056 106 10 7 chrY 26541513 26541806 -24971778 - AluSx SINE Alu -18 294 1 34 84 0 0 chrY 26541806 26541889 -24971695 + AT_rich Low_complexity Low_complexity 1 83 0 2148 118 0 16 chrY 26541987 26542291 -24971293 - AluSx SINE Alu -13 299 1 211 340 75 0 chrY 26542522 26542628 -24970956 - MIR SINE MIR -63 145 32 545 311 44 0 chrY 26543060 26543195 -24970389 + MIR3 SINE MIR 47 187 -21 837 181 121 0 chrY 26543320 26543502 -24970082 + MER3 DNA MER1_type 6 209 0 1816 143 38 7 chrY 26543624 26543911 -24969673 + AluSx SINE Alu 1 296 -16 204 206 0 0 chrY 26544446 26544480 -24969104 + polypurine Low_complexity Low_complexity 3 36 0 556 209 147 0 chrY 26545199 26545328 -24968256 - MER58B DNA MER1_type -2 339 192 582 211 0 9 chrY 26545333 26545447 -24968137 + MER58B DNA MER1_type 229 341 0 250 183 85 12 chrY 26545898 26545980 -24967604 + L1ME LINE L1 5731 5818 -303 394 289 69 63 chrY 26546025 26546592 -24966992 + L1ME3A LINE L1 5258 5827 -343 1771 164 13 38 chrY 26546906 26547224 -24966360 - AluJo SINE Alu -2 310 1 21 0 0 0 chrY 26547265 26547286 -24966298 + AT_rich Low_complexity Low_complexity 1 21 0 456 227 105 47 chrY 26548156 26548328 -24965256 - L1ME1 LINE L1 -5 6161 5980 496 113 183 9 chrY 26548337 26548452 -24965132 - L1PA13 LINE L1 -3 6160 6026 188 375 87 10 chrY 26548616 26548720 -24964864 + L2 LINE L2 3160 3271 -1 1963 108 75 4 chrY 26548878 26549157 -24964427 - AluSx SINE Alu -13 299 1 7409 36 0 10 chrY 26549373 26549816 -24963768 + L1PA4 LINE L1 4924 5370 -785 2737 16 0 3 chrY 26549816 26550122 -24963462 + AluYa5 SINE Alu 1 305 -6 7409 36 0 10 chrY 26550122 26550918 -24962666 + L1PA4 LINE L1 5370 6154 -1 184 271 42 42 chrY 26550970 26551088 -24962496 - L2 LINE L2 -573 2741 2624 213 172 17 86 chrY 26551465 26551523 -24962061 - MIR SINE MIR -15 247 194 * 500 324 130 27 chrY 26551521 26552068 -24961516 - L2 LINE L2 -1031 2283 1681 509 324 113 14 chrY 26552881 26553094 -24960490 + MIR SINE MIR 23 256 -6 264 313 92 8 chrY 26553421 26553552 -24960032 - MIR3 SINE MIR -37 171 30 244 245 0 0 chrY 26553826 26553875 -24959709 - L2 LINE L2 -5 3267 3219 2777 7 0 0 chrY 26554069 26554372 -24959212 - AluYa5 SINE Alu -8 303 1 438 176 134 8 chrY 26556258 26556377 -24957207 - L1MB8 LINE L1 0 6178 6045 225 281 0 18 chrY 26557036 26557093 -24956491 - MIR SINE MIR -50 212 157 305 240 85 39 chrY 26557115 26557244 -24956340 - MIR SINE MIR -67 195 61 806 137 0 23 chrY 26557251 26557382 -24956202 - FLAM_A SINE Alu -2 131 4 302 355 9 9 chrY 26558749 26558856 -24954728 + MIR SINE MIR 42 148 -60 317 222 157 0 chrY 26559158 26559266 -24954318 - L1ME4a LINE L1 -11 6110 5986 311 328 8 31 chrY 26559864 26559992 -24953592 + L2 LINE L2 2715 2839 -475 367 292 116 53 chrY 26560394 26560594 -24952990 + L2 LINE L2 3005 3230 -83 2131 121 0 10 chrY 26560594 26560901 -24952683 - AluSx SINE Alu -8 304 1 367 292 116 53 chrY 26560901 26560984 -24952600 + L2 LINE L2 3230 3306 -7 257 283 58 65 chrY 26561312 26561450 -24952134 - L1MEd LINE L1 -5472 647 511 2210 134 0 0 chrY 26561862 26562168 -24951416 - AluSx SINE Alu -6 306 1 503 340 76 75 chrY 26562177 26562392 -24951192 + L2 LINE L2 2551 2764 -508 2836 177 13 6 chrY 26562392 26562940 -24950644 + L1MB8 LINE L1 5609 6160 -18 503 340 76 75 chrY 26562940 26563224 -24950360 + L2 LINE L2 2764 3038 -234 1438 213 43 0 chrY 26563224 26563506 -24950078 - AluJo SINE Alu -18 294 1 503 340 76 75 chrY 26563506 26563742 -24949842 + L2 LINE L2 3038 3272 0 284 172 0 16 chrY 26564331 26564395 -24949189 + A-rich Low_complexity Low_complexity 3 65 0 6650 140 75 2 chrY 26564596 26565153 -24948431 + L1 LINE L1 3523 4038 -2108 783 164 0 16 chrY 26565153 26565281 -24948303 + FLAM_C SINE Alu 1 126 -7 6650 140 75 2 chrY 26565281 26566016 -24947568 + L1 LINE L1 4038 4909 -1237 266 315 84 55 chrY 26566144 26566382 -24947202 - L3b LINE CR1 -81 1502 1258 183 196 98 39 chrY 26566521 26566572 -24947012 + MIR SINE MIR 108 161 -101 2483 56 0 0 chrY 26566629 26566931 -24946653 + AluY SINE Alu 1 302 -9 2183 84 10 13 chrY 26567035 26567333 -24946251 + AluSc SINE Alu 1 297 -12 24 32 0 0 chrY 26568579 26568610 -24944974 + AT_rich Low_complexity Low_complexity 1 31 0 191 297 0 108 chrY 26569018 26569129 -24944455 + L3 LINE CR1 394 492 -1085 * 239 400 44 0 chrY 26569095 26569230 -24944354 + MIR SINE MIR 109 249 -13 491 190 134 28 chrY 26569273 26569415 -24944169 + MIR SINE MIR 48 204 -58 712 238 121 94 chrY 26569420 26569900 -24943684 + MLT1J LTR MaLR 8 500 -11 33 25 0 0 chrY 26570008 26570048 -24943536 + AT_rich Low_complexity Low_complexity 1 40 0 2026 125 0 20 chrY 26570055 26570358 -24943226 + AluY SINE Alu 1 297 -14 279 0 0 0 chrY 26570358 26570389 -24943195 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 423 0 0 0 chrY 26570388 26570435 -24943149 + (GA)n Simple_repeat Simple_repeat 2 48 0 204 291 81 35 chrY 26570448 26570534 -24943050 + MIR SINE MIR 105 194 -68 529 124 90 11 chrY 26571103 26571192 -24942392 - FLAM_C SINE Alu -18 125 30 528 294 34 0 chrY 26571835 26571954 -24941630 - L2 LINE L2 -6 3266 3144 287 207 122 0 chrY 26572869 26572951 -24940633 + L1MD3 LINE L1 7903 7994 -1 189 0 0 0 chrY 26573315 26573336 -24940248 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 301 176 0 26 chrY 26574775 26574844 -24938740 + AluJo SINE Alu 1 44 -255 412 139 58 23 chrY 26575006 26575092 -24938492 + AluJo SINE Alu 48 136 -176 2311 84 3 16 chrY 26575111 26575420 -24938164 + AluY SINE Alu 1 305 -6 21 0 0 0 chrY 26576456 26576477 -24937107 + AT_rich Low_complexity Low_complexity 1 21 0 446 276 32 45 chrY 26577809 26578012 -24935572 - MIR SINE MIR -56 206 8 15981 61 60 4 chrY 26578230 26580460 -24933124 + L1PA3 LINE L1 1 2357 -3789 24060 35 7 29 chrY 26580462 26583365 -24930219 + L1PA3 LINE L1 2429 5292 -863 2909 13 0 0 chrY 26583365 26583683 -24929901 + AluYb8 SINE Alu 1 318 0 24060 35 7 29 chrY 26583683 26584526 -24929058 + L1PA3 LINE L1 5292 6153 -2 2196 127 3 0 chrY 26584760 26585067 -24928517 + AluSx SINE Alu 2 309 -3 2528 40 10 0 chrY 26585283 26585583 -24928001 - AluY SINE Alu -8 303 1 2006 140 0 3 chrY 26585711 26586026 -24927558 + AluSx SINE Alu 1 314 0 486 248 68 0 chrY 26586101 26586234 -24927350 - MER58B DNA MER1_type -3 338 197 348 272 55 64 chrY 26587674 26587892 -24925692 - MIR SINE MIR -46 216 1 1946 153 0 10 chrY 26588033 26588333 -24925251 - AluSx SINE Alu -15 297 1 1795 123 83 0 chrY 26588436 26588713 -24924871 + AluSx SINE Alu 1 300 -12 218 235 137 0 chrY 26588766 26588817 -24924767 + L2 LINE L2 3205 3262 -10 189 77 0 0 chrY 26589103 26589129 -24924455 + MIR SINE MIR 227 252 -10 253 352 62 33 chrY 26589148 26589358 -24924226 + L2 LINE L2 2866 3081 -191 2787 96 65 25 chrY 26589482 26589929 -24923655 + MER4C LTR ERV1 1 465 0 224 240 0 0 chrY 26592122 26592172 -24921412 - L2 LINE L2 0 3313 3264 409 182 13 26 chrY 26592929 26593006 -24920578 - L2 LINE L2 -1 3312 3237 203 324 15 0 chrY 26593056 26593124 -24920460 + MIR SINE MIR 72 140 -122 2294 94 10 0 chrY 26593153 26593451 -24920133 - AluSp SINE Alu -12 301 1 436 120 0 67 chrY 26593655 26593730 -24919854 + FLAM_A SINE Alu 55 124 -18 3891 162 147 79 chrY 26594291 26594615 -24918969 + Charlie1a DNA MER1_type 78 378 -2383 1895 162 30 0 chrY 26594615 26594917 -24918667 + AluJb SINE Alu 1 311 -1 3891 162 147 79 chrY 26594917 26595468 -24918116 + Charlie1a DNA MER1_type 378 890 -1871 2078 139 13 0 chrY 26595468 26595770 -24917814 + AluSx SINE Alu 1 306 -6 3891 162 147 79 chrY 26595770 26596183 -24917401 + Charlie1a DNA MER1_type 890 1455 0 35 54 0 0 chrY 26596861 26596917 -24916667 + AT_rich Low_complexity Low_complexity 1 56 0 532 222 26 8 chrY 26597415 26597532 -24916052 - FLAM_A SINE Alu -13 120 2 702 138 83 0 chrY 26597738 26597847 -24915737 + FLAM_C SINE Alu 1 118 -25 498 266 128 16 chrY 26597860 26598048 -24915536 + MIR SINE MIR 19 227 -35 246 303 53 0 chrY 26598747 26598823 -24914761 - L3b LINE CR1 -201 1382 1303 238 191 32 0 chrY 26599419 26599482 -24914102 + L1M3 LINE L1 5173 5237 -909 694 117 29 0 chrY 26599483 26599586 -24913998 + U6 snRNA snRNA 2 107 0 1221 138 18 13 chrY 26599623 26599883 -24913701 + L1M3 LINE L1 5226 5487 -696 811 148 15 0 chrY 26599886 26600021 -24913563 + FRAM SINE Alu 20 156 -20 21 0 0 0 chrY 26600026 26600047 -24913537 + AT_rich Low_complexity Low_complexity 1 21 0 2224 106 3 3 chrY 26600075 26600368 -24913216 + AluSc SINE Alu 1 293 -16 996 154 52 123 chrY 26600368 26600556 -24913028 + L1M3 LINE L1 5496 5654 -529 1746 151 29 4 chrY 26600556 26600852 -24912732 + AluSx SINE Alu 3 305 0 996 154 52 123 chrY 26600852 26600986 -24912598 + L1M3 LINE L1 5654 5796 -387 519 176 162 37 chrY 26600994 26601130 -24912454 + MLT1D LTR MaLR 351 503 -2 1400 185 89 6 chrY 26601523 26601837 -24911747 + MER2 DNA MER2_type 1 340 -5 287 293 49 24 chrY 26603003 26603085 -24910499 - MIR SINE MIR -116 146 63 383 152 14 0 chrY 26603992 26604070 -24909514 + L1ME2 LINE L1 6084 6165 -1 636 222 34 107 chrY 26604300 26604534 -24909050 - MER102a DNA MER1_type -23 307 91 496 390 35 13 chrY 26605076 26605450 -24908134 + L2 LINE L2 2478 2859 -455 2118 101 6 25 chrY 26605693 26606009 -24907575 - AluY SINE Alu -1 310 1 734 256 58 29 chrY 26606727 26606980 -24906604 - MIR SINE MIR 0 262 5 826 19 0 0 chrY 26607723 26607827 -24905757 - L1PA3 LINE L1 -104 6051 5948 274 64 0 21 chrY 26607815 26607862 -24905722 + L1PA4 LINE L1 6110 6155 0 * 237 150 0 0 chrY 26608331 26608371 -24905213 - MER58B DNA MER1_type -9 332 293 1311 228 0 25 chrY 26608371 26608652 -24904932 + AluJo SINE Alu 38 311 -1 1144 214 101 7 chrY 26608657 26608933 -24904651 - MER58B DNA MER1_type -39 302 1 791 293 0 22 chrY 26608946 26609175 -24904409 + MIR SINE MIR 38 261 -1 385 358 74 0 chrY 26609203 26609351 -24904233 + L2 LINE L2 2897 3055 -217 2209 102 19 39 chrY 26609615 26609979 -24903605 + L1PA16 LINE L1 5809 6165 -1 2202 121 0 0 chrY 26610028 26610325 -24903259 + AluY SINE Alu 1 297 -14 1409 204 57 4 chrY 26610328 26610607 -24902977 + AluJo SINE Alu 1 294 -18 1136 127 0 18 chrY 26611761 26611927 -24901657 + AluSg/x SINE Alu 132 294 -16 491 337 179 20 chrY 26612346 26612996 -24900588 - L2 LINE L2 -1102 2212 1460 1244 181 0 26 chrY 26613013 26613239 -24900345 + AluJb SINE Alu 87 306 -6 200 286 0 0 chrY 26613277 26613326 -24900258 + (TAG)n Simple_repeat Simple_repeat 2 50 0 480 288 92 16 chrY 26613435 26613619 -24899965 - MIR SINE MIR -61 201 4 393 331 198 30 chrY 26613738 26614601 -24898983 - L2 LINE L2 -1912 1402 395 2044 144 23 0 chrY 26614711 26615017 -24898567 - AluSq SINE Alu 0 313 1 2009 145 20 0 chrY 26615025 26615394 -24898190 - AluSq SINE Alu 0 375 1 2243 96 3 7 chrY 26615470 26615762 -24897822 - AluSp SINE Alu -19 294 4 1572 113 124 0 chrY 26615915 26616180 -24897404 - AluY SINE Alu -3 298 1 881 147 0 0 chrY 26616327 26616456 -24897128 - FLAM_C SINE Alu -2 131 3 330 278 174 12 chrY 26616508 26616749 -24896835 - L1ME LINE L1 -348 5773 5494 312 180 0 0 chrY 26616914 26616975 -24896609 - L1MB8 LINE L1 -6 6172 6112 1780 179 0 7 chrY 26616978 26617274 -24896310 + AluSx SINE Alu 1 294 -18 3605 156 21 95 chrY 26617286 26617410 -24896174 - L1MB8 LINE L1 -50 6128 5996 1778 145 10 30 chrY 26617410 26617714 -24895870 + AluJb SINE Alu 8 305 -7 3605 156 21 95 chrY 26617714 26618591 -24894993 - L1MB8 LINE L1 -182 5996 5195 1246 220 8 12 chrY 26618592 26618851 -24894733 - AluJo SINE Alu -5 307 50 353 149 43 142 chrY 26618851 26618898 -24894686 - L1MB8 LINE L1 -955 5191 5141 1539 196 25 7 chrY 26618898 26619184 -24894400 + AluJo SINE Alu 9 299 -13 353 149 43 142 chrY 26619184 26619277 -24894307 - L1MB8 LINE L1 -1005 5141 5065 1906 164 39 7 chrY 26619323 26619732 -24893852 - L1MB8 LINE L1 -1072 5074 4653 2185 103 33 0 chrY 26619737 26620037 -24893547 - AluSg SINE Alu 0 310 1 357 262 147 40 chrY 26620041 26620125 -24893459 - L1ME LINE L1 -745 5401 5327 2282 85 7 0 chrY 26620125 26620418 -24893166 - AluY SINE Alu -16 295 1 357 262 147 40 chrY 26620418 26620558 -24893026 - L1ME LINE L1 -819 5327 5153 353 266 176 10 chrY 26620593 26620905 -24892679 - L1ME LINE L1 -1059 5087 4724 363 194 163 0 chrY 26621048 26621146 -24892438 - MIR SINE MIR 0 262 149 320 265 119 13 chrY 26621204 26621275 -24892309 - L1MB8 LINE L1 -1638 4508 4446 2148 113 0 67 chrY 26621275 26621602 -24891982 + AluSx SINE Alu 1 305 -7 320 265 119 13 chrY 26621602 26621681 -24891903 - L1MB8 LINE L1 -1700 4446 4342 24 0 0 0 chrY 26621772 26621796 -24891788 + AT_rich Low_complexity Low_complexity 1 24 0 2049 88 44 0 chrY 26623156 26623459 -24890125 + AluY SINE Alu 1 315 0 408 281 37 0 chrY 26623506 26623546 -24890038 + MER92B LTR ERV1 460 497 -139 2364 86 17 0 chrY 26623546 26623847 -24889737 + AluY SINE Alu 1 306 -5 408 281 37 0 chrY 26623847 26623941 -24889643 + MER92B LTR ERV1 497 599 -37 203 61 30 0 chrY 26623950 26623983 -24889601 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 481 261 0 17 chrY 26624074 26624193 -24889391 + MIR3 SINE MIR 79 195 -13 230 293 185 19 chrY 26624824 26625029 -24888555 + L1ME3 LINE L1 5475 5713 -457 4330 160 5 4 chrY 26625048 26625806 -24887778 - L1MB7 LINE L1 -8 6176 5418 343 266 40 16 chrY 26625859 26625983 -24887601 + L1ME3 LINE L1 5730 5856 -306 2074 152 0 0 chrY 26626047 26626344 -24887240 - AluSx SINE Alu -15 297 1 1971 146 3 0 chrY 26626901 26627195 -24886389 - AluSx SINE Alu -17 295 1 249 128 0 0 chrY 26627279 26627326 -24886258 + (T)n Simple_repeat Simple_repeat 1 47 0 4317 53 0 0 chrY 26627359 26627890 -24885694 - L1PA5 LINE L1 -9 6145 5615 429 54 0 0 chrY 26628350 26628406 -24885178 + (CA)n Simple_repeat Simple_repeat 2 57 0 202 222 0 0 chrY 26628489 26628525 -24885059 + T-rich Low_complexity Low_complexity 3 38 0 313 252 25 34 chrY 26629556 26629675 -24883909 - L2 LINE L2 -220 3052 2935 455 276 9 9 chrY 26629828 26629933 -24883651 + MER5A DNA MER1_type 35 139 -50 395 244 179 39 chrY 26630352 26630508 -24883076 + MER5A DNA MER1_type 1 189 0 425 334 69 60 chrY 26630549 26631011 -24882573 - L2 LINE L2 -913 2401 1932 2079 120 21 0 chrY 26631011 26631302 -24882282 + AluSg SINE Alu 1 297 -13 425 334 69 60 chrY 26631302 26631402 -24882182 - L2 LINE L2 -1382 1932 1834 186 43 0 0 chrY 26631521 26631544 -24882040 + (A)n Simple_repeat Simple_repeat 1 23 0 2264 83 0 7 chrY 26631651 26631952 -24881632 + AluY SINE Alu 1 299 -12 1510 107 31 5 chrY 26632185 26632409 -24881175 + MER30 DNA MER1_type 1 230 0 26 30 0 0 chrY 26632504 26632537 -24881047 + AT_rich Low_complexity Low_complexity 1 33 0 427 352 70 64 chrY 26633224 26633431 -24880153 - L2 LINE L2 -1 3271 3067 1214 192 126 26 chrY 26633431 26633702 -24879882 + AluJo SINE Alu 1 298 -14 427 352 70 64 chrY 26633702 26634033 -24879551 - L2 LINE L2 -205 3067 2663 2364 107 0 3 chrY 26634033 26634341 -24879243 + AluSx SINE Alu 1 307 -5 427 352 70 64 chrY 26634341 26634431 -24879153 - L2 LINE L2 -609 2663 2575 452 110 0 77 chrY 26634435 26634521 -24879063 + AluS SINE Alu 1 80 -228 1855 108 4 12 chrY 26634521 26634780 -24878804 + AluSx SINE Alu 43 299 -13 260 309 103 10 chrY 26634875 26634972 -24878612 + L2 LINE L2 3165 3270 -2 * 349 326 148 0 chrY 26634969 26635165 -24878419 - L2 LINE L2 -830 2484 2260 299 256 50 33 chrY 26635332 26635453 -24878131 + L1ME3A LINE L1 6041 6163 -7 346 286 108 33 chrY 26635464 26635677 -24877907 + L1ME2 LINE L1 3953 4181 -1965 1196 145 7 64 chrY 26635678 26635960 -24877624 + L1ME2 LINE L1 4898 5163 -983 2179 126 0 3 chrY 26636015 26636324 -24877260 + AluSx SINE Alu 1 308 -4 1288 176 165 15 chrY 26636457 26636718 -24876866 - AluJb SINE Alu 0 302 3 1779 175 7 0 chrY 26636730 26637021 -24876563 - AluJo SINE Alu -19 293 1 2292 104 0 25 chrY 26637072 26637389 -24876195 + AluSx SINE Alu 1 309 -3 756 126 7 28 chrY 26637441 26637584 -24876000 + L1MD3 LINE L1 7855 7994 -1 1439 212 36 82 chrY 26637589 26637924 -24875660 + L1ME2 LINE L1 5187 5536 -628 1845 146 0 65 chrY 26637924 26638247 -24875337 + AluJo SINE Alu 1 302 -10 1439 212 36 82 chrY 26638247 26638411 -24875173 + L1ME2 LINE L1 5536 5706 -458 2207 105 3 3 chrY 26638411 26638707 -24874877 + AluSx SINE Alu 1 296 -16 1439 212 36 82 chrY 26638707 26639022 -24874562 + L1ME2 LINE L1 5706 5923 -241 1829 163 7 0 chrY 26639155 26639449 -24874135 + AluJb SINE Alu 1 296 -16 1412 181 66 11 chrY 26640232 26640503 -24873081 + AluJo SINE Alu 1 286 -26 389 221 79 8 chrY 26640602 26640729 -24872855 + L1ME2 LINE L1 5938 6073 -91 258 167 0 0 chrY 26640729 26640771 -24872813 - MSTB LTR MaLR 0 426 385 267 162 0 54 chrY 26640960 26641034 -24872550 + (CAGGG)n Simple_repeat Simple_repeat 2 71 0 324 299 181 72 chrY 26641046 26641910 -24871674 - L1M2 LINE L1 -5447 1402 445 457 252 48 18 chrY 26641922 26642275 -24871309 + (CTAGGG)n Simple_repeat Simple_repeat 1 363 0 445 271 46 9 chrY 26642343 26642681 -24870903 + (CTAGGG)n Simple_repeat Simple_repeat 1 350 0 200 146 0 21 chrY 26642698 26642746 -24870838 + (CAGGG)n Simple_repeat Simple_repeat 1 47 0 199 156 0 56 chrY 26642874 26642964 -24870620 + (CAGGG)n Simple_repeat Simple_repeat 1 85 0 434 250 53 0 chrY 26643020 26643172 -24870412 + (CTAGGG)n Simple_repeat Simple_repeat 1 160 0 366 280 48 0 chrY 26643284 26643452 -24870132 + (CTAGGG)n Simple_repeat Simple_repeat 2 177 0 247 220 6 69 chrY 26643536 26643695 -24869889 + (CAGGG)n Simple_repeat Simple_repeat 1 149 0 * 251 215 11 84 chrY 26643581 26643772 -24869812 + (CAGGC)n Simple_repeat Simple_repeat 3 179 0 453 202 5 64 chrY 26643786 26643974 -24869610 + (CAGGG)n Simple_repeat Simple_repeat 1 177 0 678 278 72 24 chrY 26644784 26645135 -24868449 - HSREP522 Satellite telomeric -171 367 1 4368 226 51 18 chrY 26645266 26646059 -24867525 + L1 LINE L1 2785 3640 -2506 2691 13 7 3 chrY 26646059 26646367 -24867217 + AluY SINE Alu 1 309 -2 4368 226 51 18 chrY 26646367 26646894 -24866690 + L1 LINE L1 3640 4148 -1998 2398 116 86 2 chrY 26646894 26647359 -24866225 - HSREP522 Satellite telomeric 0 504 1 1190 150 165 25 chrY 26647373 26647700 -24865884 - TAR1 Satellite telomeric -243 1868 1496 288 242 5 88 chrY 26648568 26648762 -24864822 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 * 332 208 5 102 chrY 26648624 26648821 -24864763 + G-rich Low_complexity Low_complexity 3 180 0 511 96 0 36 chrY 26649557 26649640 -24863944 - MADE1 DNA Mariner 0 80 1 465 308 99 31 chrY 26650153 26650445 -24863139 + L1ME LINE L1 5495 5806 -315 21 0 0 31 chrY 26650740 26650755 -24862829 + AT_rich Low_complexity Low_complexity 1 15 -16 2088 132 7 3 chrY 26650755 26651065 -24862519 - AluSx SINE Alu -1 311 1 21 0 0 31 chrY 26651065 26651081 -24862503 + AT_rich Low_complexity Low_complexity 15 31 0 501 279 31 12 chrY 26652149 26652310 -24861274 - MIR SINE MIR 0 262 99 207 69 0 0 chrY 26654282 26654311 -24859273 + (CAA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chrY 26654976 26655004 -24858580 + AT_rich Low_complexity Low_complexity 1 28 0 251 283 178 6 chrY 26655347 26655527 -24858057 + MER102a DNA MER1_type 120 330 0 21 0 0 0 chrY 26655569 26655590 -24857994 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 26655654 26655682 -24857902 + AT_rich Low_complexity Low_complexity 1 28 0 1954 118 0 28 chrY 26655819 26656149 -24857435 + AluSc SINE Alu 1 322 0 201 313 100 25 chrY 26656960 26657040 -24856544 - L2 LINE L2 -48 3224 3139 410 273 71 19 chrY 26657903 26658057 -24855527 + MIR SINE MIR 18 179 -83 234 0 0 0 chrY 26658069 26658095 -24855489 + (TA)n Simple_repeat Simple_repeat 1 26 0 290 119 81 19 chrY 26658168 26658328 -24855256 + (TA)n Simple_repeat Simple_repeat 2 171 0 367 127 0 0 chrY 26660303 26660358 -24853226 + U6 snRNA snRNA 1 55 -52 24 32 0 0 chrY 26661438 26661469 -24852115 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrY 26661735 26661757 -24851827 + AT_rich Low_complexity Low_complexity 1 22 0 387 83 0 42 chrY 26661985 26662057 -24851527 - Tigger2 DNA MER2_type -147 2571 2503 193 361 21 10 chrY 26662373 26662470 -24851114 - L2 LINE L2 -787 2527 2430 253 309 139 56 chrY 26662642 26662930 -24850654 - L2 LINE L2 -1145 2169 1858 1544 207 0 30 chrY 26663913 26664212 -24849372 - AluJo SINE Alu -16 296 7 234 0 0 0 chrY 26664550 26664576 -24849008 + (TA)n Simple_repeat Simple_repeat 2 27 0 2028 129 0 10 chrY 26664576 26664860 -24848724 - AluSc SINE Alu -26 283 1 795 241 25 0 chrY 26664870 26665028 -24848556 - FAM SINE Alu -13 162 1 2302 226 46 7 chrY 26665365 26665906 -24847678 - MER68 LTR ERV1 0 562 1 26 50 0 0 chrY 26666181 26666221 -24847363 + AT_rich Low_complexity Low_complexity 1 40 0 27 62 0 0 chrY 26666239 26666287 -24847297 + AT_rich Low_complexity Low_complexity 1 48 0 1472 233 45 9 chrY 26666476 26666897 -24846687 - L1MC1 LINE L1 -6 6327 5892 2649 219 50 15 chrY 26667934 26668596 -24844988 - MER44D DNA MER2_type -1 704 20 2895 187 113 76 chrY 26668599 26669427 -24844157 + MER21B LTR ERV1 1 859 -4 1938 145 3 17 chrY 26669854 26670150 -24843434 - AluSx SINE Alu -16 296 5 639 192 8 25 chrY 26670161 26670281 -24843303 - FLAM_A SINE Alu -16 126 9 329 61 0 20 chrY 26670282 26670331 -24843253 + (CA)n Simple_repeat Simple_repeat 2 49 0 2852 80 2 0 chrY 26670336 26670797 -24842787 - L1P3 LINE L1 -505 5649 5188 6624 106 14 1 chrY 26670797 26671841 -24841743 + L1P3 LINE L1 4116 5173 -973 248 62 0 0 chrY 26673975 26674023 -24839561 - LTR66 LTR ERVL -169 441 394 307 188 174 0 chrY 26675717 26675786 -24837798 - MER5A DNA MER1_type -83 106 26 267 247 153 0 chrY 26677595 26677680 -24835904 - MER5A DNA MER1_type -83 106 9 1508 153 8 0 chrY 26678803 26679038 -24834546 - AluSx SINE Alu -71 241 5 31 36 0 18 chrY 26679048 26679080 -24834504 + AT_rich Low_complexity Low_complexity 1 33 -22 458 291 0 26 chrY 26679080 26679197 -24834387 - FLAM_A SINE Alu -16 117 4 31 36 0 18 chrY 26679197 26679220 -24834364 + AT_rich Low_complexity Low_complexity 33 55 0 445 366 18 18 chrY 26679346 26679573 -24834011 - MIR SINE MIR 0 262 36 257 299 72 10 chrY 26680195 26680292 -24833292 - L3 LINE CR1 -8 1569 1467 239 392 125 0 chrY 26680289 26680409 -24833175 - MIR3 SINE MIR -72 136 2 * 35 78 0 0 chrY 26681414 26681491 -24832093 + AT_rich Low_complexity Low_complexity 1 77 0 24 0 0 0 chrY 26682303 26682327 -24831257 + AT_rich Low_complexity Low_complexity 1 24 0 1670 178 0 4 chrY 26682363 26682632 -24830952 - AluSx SINE Alu -44 268 1 2301 100 0 3 chrY 26683304 26683613 -24829971 - AluY SINE Alu -3 308 1 780 176 128 7 chrY 26683661 26683809 -24829775 + AluJb SINE Alu 124 289 -23 1024 182 25 37 chrY 26684046 26684349 -24829235 + MER2 DNA MER2_type 1 345 0 333 0 0 0 chrY 26684351 26684388 -24829196 + (TG)n Simple_repeat Simple_repeat 2 38 0 603 156 9 18 chrY 26684736 26684845 -24828739 + FRAM SINE Alu 53 160 -16 2151 121 7 0 chrY 26684995 26685292 -24828292 + AluSx SINE Alu 1 299 -13 1706 165 33 0 chrY 26685332 26685631 -24827953 + AluJo SINE Alu 1 308 0 391 206 11 43 chrY 26685840 26685932 -24827652 + L2 LINE L2 3225 3313 0 1964 148 7 14 chrY 26686332 26686629 -24826955 - AluSx SINE Alu -17 295 1 195 42 0 0 chrY 26686675 26686699 -24826885 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1014 163 47 0 chrY 26686740 26686912 -24826672 + MER5A DNA MER1_type 1 180 -9 189 0 0 0 chrY 26686937 26686958 -24826626 + (TG)n Simple_repeat Simple_repeat 2 22 0 2056 120 7 0 chrY 26686959 26687234 -24826350 - AluSx SINE Alu -35 277 1 2151 122 0 3 chrY 26687702 26687997 -24825587 + AluSg SINE Alu 1 294 -16 2077 89 44 0 chrY 26688158 26688474 -24825110 + AluY SINE Alu 1 328 0 2137 104 3 24 chrY 26688746 26689043 -24824541 - AluSg1 SINE Alu -14 295 5 1805 135 50 3 chrY 26689045 26689327 -24824257 - AluSx SINE Alu -6 306 12 271 269 0 13 chrY 26689336 26689414 -24824170 + CT-rich Low_complexity Low_complexity 1 77 0 342 296 115 21 chrY 26689707 26689950 -24823634 - L1MC/D LINE L1 -2032 5776 5511 636 176 29 22 chrY 26690017 26690153 -24823431 - FLAM_C SINE Alu -6 137 1 1781 173 0 10 chrY 26690190 26690490 -24823094 - AluJb SINE Alu -15 297 1 2076 123 17 7 chrY 26691899 26692191 -24821393 - AluSx SINE Alu -16 296 2 2258 112 3 0 chrY 26692608 26692913 -24820671 - AluSp SINE Alu -7 306 1 28 0 0 0 chrY 26693036 26693064 -24820520 + AT_rich Low_complexity Low_complexity 1 28 0 2365 98 0 0 chrY 26693330 26693637 -24819947 - AluY SINE Alu -4 307 1 2437 78 0 3 chrY 26694212 26694507 -24819077 + AluY SINE Alu 1 294 -17 2031 144 3 7 chrY 26694542 26694840 -24818744 - AluSx SINE Alu -15 297 1 2104 106 20 0 chrY 26694852 26695144 -24818440 - AluSc SINE Alu -11 298 1 779 181 0 0 chrY 26695471 26695604 -24817980 - FLAM_C SINE Alu 0 133 1 818 236 154 25 chrY 26695609 26695973 -24817611 - L1MC4 LINE L1 0 8042 7632 231 332 152 52 chrY 26695975 26696264 -24817320 - L2 LINE L2 -565 2749 2432 247 322 169 8 chrY 26696351 26696736 -24816848 - L2 LINE L2 -1066 2248 1802 1852 127 51 0 chrY 26696761 26697037 -24816547 - AluSx SINE Alu -22 290 1 300 267 23 12 chrY 26697185 26697271 -24816313 + MIR SINE MIR 58 144 -64 1002 153 24 29 chrY 26697387 26697582 -24816002 + AluSg/x SINE Alu 131 310 0 392 221 15 84 chrY 26697650 26697781 -24815803 + MIR SINE MIR 87 208 -54 5658 128 37 26 chrY 26698180 26699214 -24814370 - L1PA15 LINE L1 0 6165 5112 1978 122 10 10 chrY 26699214 26699510 -24814074 - AluSq SINE Alu -17 296 1 5658 128 37 26 chrY 26699510 26699698 -24813886 - L1PA15 LINE L1 -1053 5112 4928 22 56 0 0 chrY 26700360 26700396 -24813188 + AT_rich Low_complexity Low_complexity 1 36 0 530 289 168 25 chrY 26700624 26701159 -24812425 - L1MC4a LINE L1 -545 5621 5261 326 192 0 13 chrY 26701437 26701515 -24812069 - HAL1 LINE L1 -302 2205 2129 1547 195 57 7 chrY 26701530 26701827 -24811757 - AluJo SINE Alu 0 312 1 2191 130 3 0 chrY 26701886 26702193 -24811391 - AluSg SINE Alu 0 310 3 247 290 285 5 chrY 26702372 26702593 -24810991 - HAL1 LINE L1 -665 1842 1560 959 153 0 0 chrY 26702651 26702788 -24810796 - AluSg/x SINE Alu -39 271 135 1588 178 48 3 chrY 26702789 26703082 -24810502 - AluSq SINE Alu -7 306 1 345 222 40 68 chrY 26703096 26703472 -24810112 - HAL1 LINE L1 -991 1516 1058 2301 125 0 0 chrY 26703476 26703789 -24809795 + AluSq SINE Alu 1 313 0 307 136 0 0 chrY 26703850 26703894 -24809690 - Alu SINE Alu -256 44 1 334 290 28 52 chrY 26703917 26704037 -24809547 - MLT1J1 LTR MaLR -284 188 80 1592 193 3 23 chrY 26704037 26704338 -24809246 - AluJo SINE Alu -17 295 1 334 290 28 52 chrY 26704338 26704415 -24809169 - MLT1J1 LTR MaLR -392 80 3 1019 321 108 29 chrY 26704420 26705235 -24808349 - HAL1 LINE L1 -1618 889 11 195 100 0 0 chrY 26705251 26705281 -24808303 + (TG)n Simple_repeat Simple_repeat 2 31 0 1500 214 3 23 chrY 26705286 26705585 -24807999 - AluJo SINE Alu -19 293 1 593 211 149 14 chrY 26705907 26706118 -24807466 - L1MDa LINE L1 -3860 2680 2432 1905 166 7 0 chrY 26706118 26706420 -24807164 - AluJb SINE Alu -8 304 1 593 211 149 14 chrY 26706420 26706519 -24807065 - L1MDa LINE L1 -4108 2432 2348 1914 132 14 7 chrY 26706545 26706840 -24806744 + AluSq SINE Alu 1 297 -16 1700 138 103 11 chrY 26706842 26707124 -24806460 + AluSx SINE Alu 1 308 -4 1710 168 55 0 chrY 26707179 26707470 -24806114 - AluJo SINE Alu -5 307 1 312 175 47 24 chrY 26707787 26707872 -24805712 + MLT1E3 LTR MaLR 420 491 -102 819 184 21 0 chrY 26707875 26708016 -24805568 + FRAM SINE Alu 11 154 -22 450 286 94 29 chrY 26708030 26708338 -24805246 + L1ME3A LINE L1 3307 3634 -2512 716 264 37 33 chrY 26708443 26708742 -24804842 + L1ME3A LINE L1 3861 4160 -1986 1208 244 98 54 chrY 26708791 26709291 -24804293 + MLT1E LTR MaLR 70 591 -2 646 245 55 85 chrY 26709391 26709572 -24804012 + L1ME3A LINE L1 4322 4507 -1639 1855 167 0 10 chrY 26709572 26709880 -24803704 + AluSx SINE Alu 1 305 0 646 245 55 85 chrY 26709880 26709997 -24803587 + L1ME3A LINE L1 4507 4626 -1520 2037 143 3 0 chrY 26709997 26710297 -24803287 - AluSq SINE Alu -10 303 3 646 245 55 85 chrY 26710297 26710523 -24803061 + L1ME3A LINE L1 4626 4832 -1314 1769 99 126 18 chrY 26710561 26710572 -24803012 + MSTC LTR MaLR 1 9 -419 2414 116 31 3 chrY 26710572 26710926 -24802658 - THE1B LTR MaLR 0 364 1 1769 99 126 18 chrY 26710926 26711256 -24802328 + MSTC LTR MaLR 9 379 -49 306 209 68 110 chrY 26711256 26711344 -24802240 + L1ME3A LINE L1 4960 5050 -1096 2019 125 48 7 chrY 26711344 26711639 -24801945 + AluSx SINE Alu 3 309 -3 2316 98 0 0 chrY 26711639 26711936 -24801648 + AluY SINE Alu 1 297 -14 306 209 68 110 chrY 26711936 26712009 -24801575 + L1ME3A LINE L1 5048 5115 -1031 397 292 58 7 chrY 26712016 26712170 -24801414 + L1ME3A LINE L1 5135 5296 -850 2195 128 0 6 chrY 26712256 26712568 -24801016 + AluSx SINE Alu 3 312 0 2217 99 3 0 chrY 26712638 26712921 -24800663 + AluSq SINE Alu 16 299 -14 450 192 184 43 chrY 26712927 26713161 -24800423 + L1P5 LINE L1 5301 5567 -587 332 219 31 16 chrY 26713178 26713306 -24800278 + (TA)n Simple_repeat Simple_repeat 1 130 0 527 263 29 0 chrY 26713436 26713611 -24799973 + L1ME3A LINE L1 5760 5939 -231 257 200 27 45 chrY 26713782 26713892 -24799692 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2016 139 0 14 chrY 26714218 26714543 -24799041 + AluSx SINE Alu 1 321 0 1892 137 14 3 chrY 26714919 26715211 -24798373 - AluSx SINE Alu -16 296 2 1845 150 60 6 chrY 26715766 26716113 -24797471 + MER47A DNA MER2_type 1 366 0 187 221 264 43 chrY 26716374 26716514 -24797070 + MIR SINE MIR 31 201 -61 235 296 42 0 chrY 26717083 26717154 -24796430 - L2 LINE L2 0 3272 3199 202 301 183 65 chrY 26717165 26717411 -24796173 + L2 LINE L2 2997 3271 -1 765 200 0 18 chrY 26717512 26717682 -24795902 - MLT1A1 LTR MaLR 0 365 199 2165 141 45 12 chrY 26717728 26718147 -24795437 + L1MB4 LINE L1 5748 6180 0 1651 148 74 0 chrY 26718156 26718426 -24795158 + AluJo SINE Alu 1 290 -22 897 110 0 8 chrY 26719553 26719671 -24793913 + AluSq/x SINE Alu 1 117 -196 1955 120 7 10 chrY 26719853 26720144 -24793440 - AluSx SINE Alu -22 290 1 850 191 62 0 chrY 26720372 26720581 -24793003 - MER99 DNA DNA -271 557 336 2171 117 0 7 chrY 26720581 26720745 -24792839 - AluSq SINE Alu -17 296 133 783 55 0 0 chrY 26720745 26720854 -24792730 + (TA)n Simple_repeat Simple_repeat 2 110 0 2171 117 0 7 chrY 26720854 26720987 -24792597 - AluSq SINE Alu -180 133 1 1041 158 31 36 chrY 26721299 26721495 -24792089 - AluJb SINE Alu -117 195 1 332 195 195 8 chrY 26721496 26721614 -24791970 - L1MB8 LINE L1 -270 5908 5769 1829 114 57 13 chrY 26721620 26721936 -24791648 - L1MA4A LINE L1 0 6303 5974 968 102 8 0 chrY 26721937 26722064 -24791520 - AluSq/x SINE Alu -184 128 1 5431 102 19 26 chrY 26722373 26723886 -24789698 - L1PA15 LINE L1 -8 6157 4675 298 304 120 40 chrY 26723889 26724139 -24789445 + L2 LINE L2 2489 2758 -556 227 404 35 39 chrY 26724182 26724437 -24789147 + L2 LINE L2 2839 3092 -180 477 308 102 32 chrY 26724450 26724824 -24788760 - L1MEd LINE L1 -5266 1368 969 454 180 50 72 chrY 26725039 26725178 -24788406 - L1MEd LINE L1 -5924 618 483 2080 133 23 0 chrY 26725346 26725648 -24787936 + AluSx SINE Alu 1 309 -3 1456 266 67 19 chrY 26725665 26726184 -24787400 + L1M4 LINE L1 2 545 -5997 2271 104 0 19 chrY 26726194 26726511 -24787073 + AluY SINE Alu 1 311 0 2218 199 21 0 chrY 26726517 26726953 -24786631 - MER44D DNA MER2_type -61 544 228 640 229 11 103 chrY 26726956 26727218 -24786366 + L1M4 LINE L1 1866 2103 -4543 420 289 17 25 chrY 26727249 26727488 -24786096 + L1M4 LINE L1 2287 2523 -4123 3623 206 62 18 chrY 26727496 26728593 -24784991 + L1M4 LINE L1 2616 3760 -2884 3400 233 57 15 chrY 26728673 26728815 -24784769 + L1M4 LINE L1 4507 4642 -2002 180 0 0 0 chrY 26728815 26728835 -24784749 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3400 233 57 15 chrY 26728835 26729734 -24783850 + L1M4 LINE L1 4642 5591 -1053 1364 220 44 116 chrY 26729728 26730365 -24783219 - L1MCa LINE L1 -5471 616 3 * 1261 192 53 11 chrY 26730371 26730687 -24782897 - L1ME LINE L1 -567 5599 5269 996 121 6 6 chrY 26730694 26730860 -24782724 - L1MA6 LINE L1 -6 6294 6129 5869 30 1 0 chrY 26731267 26731960 -24781624 - L1PA3 LINE L1 -1 6154 5461 202 186 68 0 chrY 26732861 26732920 -24780664 + A-rich Low_complexity Low_complexity 4 66 0 186 290 0 29 chrY 26734836 26734905 -24778679 - MIR SINE MIR -124 138 72 417 20 0 0 chrY 26735151 26735201 -24778383 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 35 0 0 chrY 26736718 26736747 -24776837 + AT_rich Low_complexity Low_complexity 1 29 0 2107 125 3 0 chrY 26736922 26737211 -24776373 + AluSg SINE Alu 1 290 -20 1363 210 174 58 chrY 26737708 26738342 -24775242 - L1MC4 LINE L1 -678 7347 6641 496 277 60 33 chrY 26738558 26739024 -24774560 - L1MC4 LINE L1 -453 5700 5268 2086 158 99 3 chrY 26739169 26739561 -24774023 + MSTB1 LTR MaLR 1 430 -2 366 332 59 5 chrY 26739787 26740007 -24773577 - L1MC4 LINE L1 -1116 5013 4782 313 271 94 43 chrY 26740220 26740732 -24772852 - L1MC4 LINE L1 -2699 3430 2893 500 319 67 53 chrY 26740951 26741518 -24772066 - L1MC4 LINE L1 -4864 1255 681 347 179 12 48 chrY 26741582 26741666 -24771918 - MER94 DNA DNA -48 86 6 610 261 121 50 chrY 26741796 26742160 -24771424 - MER57B LTR ERV1 -4 430 41 360 43 0 0 chrY 26742445 26742491 -24771093 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1093 186 42 5 chrY 26742945 26743160 -24770424 - MLT1C LTR MaLR 0 467 245 185 211 19 0 chrY 26743336 26743388 -24770196 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1835 149 7 40 chrY 26744032 26744328 -24769256 + AluSx SINE Alu 4 289 -23 22 70 0 0 chrY 26744530 26744573 -24769011 + AT_rich Low_complexity Low_complexity 1 43 0 241 153 17 17 chrY 26744613 26744672 -24768912 + GA-rich Low_complexity Low_complexity 2 60 0 2145 93 55 0 chrY 26745448 26745739 -24767845 + AluY SINE Alu 1 307 -4 210 37 0 0 chrY 26746845 26746872 -24766712 + (TCCA)n Simple_repeat Simple_repeat 3 29 0 1901 120 4 0 chrY 26747761 26748027 -24765557 + AluSg SINE Alu 4 270 -40 189 64 0 64 chrY 26748034 26748081 -24765503 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 248 245 0 0 chrY 26748239 26748292 -24765292 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1855 171 3 3 chrY 26749204 26749508 -24764076 + AluSq SINE Alu 1 304 -9 492 18 0 0 chrY 26750551 26750608 -24762976 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 210 307 13 0 chrY 26751627 26751702 -24761882 + (CATA)n Simple_repeat Simple_repeat 3 78 0 180 97 0 0 chrY 26752648 26752679 -24760905 + (GA)n Simple_repeat Simple_repeat 2 32 0 444 19 0 0 chrY 26753686 26753739 -24759845 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 198 0 0 0 chrY 26755206 26755228 -24758356 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1826 151 7 4 chrY 26755230 26755508 -24758076 - AluSg SINE Alu -31 279 1 21 0 0 0 chrY 26755535 26755556 -24758028 + AT_rich Low_complexity Low_complexity 1 21 0 232 307 10 0 chrY 26757252 26757353 -24756231 - L1MC4 LINE L1 -1327 6715 6614 425 214 0 7 chrY 26757361 26757501 -24756083 + (TA)n Simple_repeat Simple_repeat 1 139 0 351 189 0 27 chrY 26757554 26757665 -24755919 + (TA)n Simple_repeat Simple_repeat 2 109 0 6324 137 47 32 chrY 26757666 26758830 -24754754 + Tigger1 DNA MER2_type 1 1182 -1236 5056 228 80 28 chrY 26758831 26762829 -24750755 + L1M2c LINE L1 14 3696 -3092 2194 74 3 7 chrY 26762829 26763109 -24750475 + L1PA5 LINE L1 5860 6154 0 5056 228 80 28 chrY 26763109 26763633 -24749951 + L1M2c LINE L1 3696 4192 -2596 2133 167 3 5 chrY 26763639 26764029 -24749555 + Tigger1 DNA MER2_type 2029 2417 -1 202 183 28 0 chrY 26764029 26764100 -24749484 + (TA)n Simple_repeat Simple_repeat 2 74 0 245 288 0 0 chrY 26765355 26765421 -24748163 - L2 LINE L2 -684 2630 2565 512 266 72 5 chrY 26765861 26766083 -24747501 - L1ME LINE L1 -297 5824 5588 371 324 141 7 chrY 26766257 26766556 -24747028 - L1ME LINE L1 -893 5253 4915 2191 109 3 3 chrY 26766892 26767194 -24746390 - AluSc SINE Alu -7 302 1 7219 52 0 0 chrY 26767731 26768779 -24744805 - L1PA5 LINE L1 0 6154 5106 328 333 40 5 chrY 26768876 26769077 -24744507 - HAL1b LINE L1 -673 675 468 5313 98 15 7 chrY 26769521 26770344 -24743240 - L1PA14 LINE L1 -1 6160 5332 2021 142 20 0 chrY 26771375 26771670 -24741914 + AluSx SINE Alu 1 301 -11 186 103 0 0 chrY 26771676 26771705 -24741879 + (TA)n Simple_repeat Simple_repeat 2 30 0 411 21 0 0 chrY 26772765 26772813 -24740771 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1729 120 0 39 chrY 26773030 26773288 -24740296 + AluSg SINE Alu 33 280 -30 13120 139 38 13 chrY 26773335 26775655 -24737929 + L1MA2 LINE L1 1252 3633 -3932 2145 128 0 0 chrY 26775655 26775960 -24737624 + AluSc SINE Alu 3 307 -2 13120 139 38 13 chrY 26775960 26776005 -24737579 + L1MA2 LINE L1 3633 3675 -3890 2208 131 0 0 chrY 26776015 26776327 -24737257 + AluSx SINE Alu 1 312 0 7830 157 14 19 chrY 26776350 26778487 -24735097 + L1MA2 LINE L1 5117 7239 -484 2356 109 0 0 chrY 26778487 26778791 -24734793 + AluSp SINE Alu 1 304 -9 7830 157 14 19 chrY 26778791 26779202 -24734382 + L1MA2 LINE L1 7239 7651 -72 371 136 61 0 chrY 26779899 26779965 -24733619 + U2 snRNA snRNA 1 70 -118 628 235 33 77 chrY 26780470 26780653 -24732931 + MER5A DNA MER1_type 14 188 -1 711 178 12 150 chrY 26780913 26781166 -24732418 - MER20 DNA MER1_type -1 218 1 558 178 16 126 chrY 26782478 26782669 -24730915 - MLT1H LTR MaLR -2 547 378 2131 250 46 56 chrY 26782722 26783516 -24730068 + L1M2b LINE L1 1516 2344 -4865 1822 181 10 0 chrY 26783517 26783810 -24729774 + AluSx SINE Alu 3 298 -14 3062 187 15 39 chrY 26783841 26783966 -24729618 + L1M2b LINE L1 2574 2700 -4508 1800 174 3 7 chrY 26783966 26784265 -24729319 + AluSx SINE Alu 11 308 -4 3062 187 15 39 chrY 26784265 26785269 -24728315 + L1M2b LINE L1 2700 3679 -3529 1517 94 34 0 chrY 26785276 26785510 -24728074 + L1MA5 LINE L1 6056 6297 -3 906 256 24 18 chrY 26785578 26785837 -24727747 - MLT1H LTR MaLR -248 301 1 4142 233 28 22 chrY 26786134 26787343 -24726241 + L1PA12 LINE L1 10 1497 -6084 3111 96 47 10 chrY 26787343 26787853 -24725731 + L1PA11 LINE L1 5259 5787 -387 21 0 0 0 chrY 26788560 26788581 -24725003 + AT_rich Low_complexity Low_complexity 1 21 0 2779 99 10 0 chrY 26788878 26789270 -24724314 + L1PA11 LINE L1 5769 6164 -10 306 248 40 0 chrY 26789346 26789447 -24724137 - L1ME3 LINE L1 -9 6153 6049 * 2685 243 77 51 chrY 26789442 26790153 -24723431 - L1M4 LINE L1 -1130 5016 4254 1310 175 102 39 chrY 26790153 26790438 -24723146 - AluJo SINE Alu -9 303 1 2685 243 77 51 chrY 26790438 26791039 -24722545 - L1M4 LINE L1 -1892 4254 3670 428 192 10 0 chrY 26793078 26793182 -24720402 + (TA)n Simple_repeat Simple_repeat 2 106 0 2095 123 0 3 chrY 26793372 26793780 -24719804 + AluSq SINE Alu 5 411 0 260 252 272 0 chrY 26793833 26793980 -24719604 - L1ME LINE L1 -360 5761 5575 306 323 97 23 chrY 26793990 26794207 -24719377 - L1ME LINE L1 -781 5552 5320 183 235 0 0 chrY 26794865 26794916 -24718668 + (TA)n Simple_repeat Simple_repeat 2 52 0 315 303 20 0 chrY 26796762 26796861 -24716723 + GA-rich Low_complexity Low_complexity 2 102 0 5230 136 51 31 chrY 26796997 26797268 -24716316 - L1MA8 LINE L1 0 6291 6027 1680 136 115 11 chrY 26797268 26797547 -24716037 + AluSc SINE Alu 1 308 -1 5230 136 51 31 chrY 26797547 26798441 -24715143 - L1MA8 LINE L1 -264 6027 5110 1081 256 54 21 chrY 26798479 26798904 -24714680 - L1M4 LINE L1 -3127 3019 2581 575 298 46 24 chrY 26799128 26799457 -24714127 - L1ME LINE L1 -1995 4151 3816 1679 158 26 3 chrY 26799532 26799843 -24713741 - L1PA16 LINE L1 -21 6145 5828 2244 116 0 0 chrY 26799843 26800145 -24713439 - AluSq SINE Alu -11 302 1 2153 127 3 0 chrY 26800148 26800477 -24713107 - AluSx SINE Alu 0 330 1 929 148 59 38 chrY 26800485 26800721 -24712863 - L1 LINE L1 -2150 3996 3756 * 6238 133 29 11 chrY 26800720 26801877 -24711707 - L1PA15-16 LINE L1 -4365 2484 1307 2304 160 15 0 chrY 26801885 26802279 -24711305 - L1PA15-16 LINE L1 -6437 412 13 494 357 58 7 chrY 26802285 26802627 -24710957 - L1ME LINE L1 -2316 3830 3468 583 180 0 0 chrY 26802627 26802727 -24710857 + AluSg/x SINE Alu 204 303 -9 563 189 119 6 chrY 26803074 26803233 -24710351 + MER96B DNA MER1_type? 3 179 -238 347 277 17 8 chrY 26803759 26803878 -24709706 - MER112 DNA MER1_type -2 258 139 378 0 0 0 chrY 26803892 26803934 -24709650 + (TG)n Simple_repeat Simple_repeat 2 43 0 493 278 16 42 chrY 26804006 26804197 -24709387 + MIR3 SINE MIR 23 208 0 1734 150 0 11 chrY 26804257 26804531 -24709053 + AluSx SINE Alu 1 271 -41 207 0 0 0 chrY 26804541 26804564 -24709020 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 195 42 0 0 chrY 26805187 26805211 -24708373 + (TG)n Simple_repeat Simple_repeat 2 25 0 518 226 66 86 chrY 26805534 26805941 -24707643 - L1MC5 LINE L1 -158 7803 7405 464 242 47 16 chrY 26805941 26806069 -24707515 - MIR SINE MIR -42 220 89 225 0 0 0 chrY 26807394 26807419 -24706165 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1779 163 0 0 chrY 26807422 26807699 -24705885 - AluSx SINE Alu -25 287 11 23 0 0 0 chrY 26809436 26809459 -24704125 + AT_rich Low_complexity Low_complexity 1 23 0 212 300 78 0 chrY 26809459 26809549 -24704035 + L3b LINE CR1 1125 1221 -362 2215 135 0 0 chrY 26809767 26810079 -24703505 - AluSx SINE Alu 0 312 1 518 331 22 11 chrY 26810819 26811003 -24702581 - MER5A DNA MER1_type 0 189 4 209 315 120 19 chrY 26811504 26811720 -24701864 + L2 LINE L2 2412 2649 -665 273 250 143 9 chrY 26811803 26811915 -24701669 + MIR SINE MIR 81 207 -55 691 169 8 0 chrY 26812188 26812306 -24701278 - AluJ SINE Alu -4 308 190 670 231 0 0 chrY 26812312 26812442 -24701142 - AluJ SINE Alu -181 131 2 2339 115 3 0 chrY 26812473 26812785 -24700799 - AluSp SINE Alu 0 313 1 21 36 0 0 chrY 26813352 26813380 -24700204 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 26813488 26813509 -24700075 + AT_rich Low_complexity Low_complexity 1 21 0 2154 123 20 0 chrY 26813573 26813874 -24699710 + AluSc SINE Alu 1 307 -2 1937 150 17 0 chrY 26813931 26814225 -24699359 + AluSx SINE Alu 1 299 -13 958 99 0 0 chrY 26814866 26814987 -24698597 - FRAM SINE Alu -28 148 28 2666 204 47 7 chrY 26814987 26815581 -24698003 + MER54A LTR ERVL 284 901 0 2811 0 0 0 chrY 26816521 26816822 -24696762 - AluYa5 SINE Alu -10 301 1 678 108 117 0 chrY 26817614 26817734 -24695850 - MER85 DNA T2_type -2 137 4 1761 167 3 10 chrY 26819101 26819394 -24694190 - AluJb SINE Alu -17 295 5 10335 216 23 8 chrY 26820625 26824346 -24689238 - L1PA16 LINE L1 -9 6157 2348 2033 132 3 7 chrY 26824348 26824637 -24688947 + AluSg SINE Alu 1 288 -22 2038 150 0 0 chrY 26827973 26828266 -24685318 - AluSx SINE Alu -19 293 1 1570 204 36 0 chrY 26829708 26830037 -24683547 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chrY 26830706 26830727 -24682857 + AT_rich Low_complexity Low_complexity 1 21 0 3090 161 5 52 chrY 26830755 26831376 -24682208 - LTR14B LTR ERVK 0 608 17 418 297 121 18 chrY 26831471 26831636 -24681948 - MER5A DNA MER1_type 0 189 8 239 366 0 21 chrY 26831671 26831764 -24681820 - MER5A DNA MER1_type -31 158 68 2143 188 48 30 chrY 26831892 26832392 -24681192 - LTR22 LTR ERVK 0 509 1 1679 187 0 14 chrY 26832525 26832814 -24680770 + AluJo SINE Alu 1 285 -27 2166 119 0 25 chrY 26832825 26833143 -24680441 + AluSq SINE Alu 1 310 -3 457 270 164 40 chrY 26834309 26834535 -24679049 + MIR SINE MIR 2 255 -7 252 132 0 0 chrY 26834502 26834540 -24679044 + L2 LINE L2 3269 3306 -7 * 750 189 112 0 chrY 26834859 26835002 -24678582 - AluSc SINE Alu -16 293 135 476 253 138 13 chrY 26835069 26835294 -24678290 - Charlie7 DNA MER1_type -266 2346 2094 1040 129 0 0 chrY 26835345 26835485 -24678099 + AluSx SINE Alu 61 200 -112 549 144 0 76 chrY 26835528 26835608 -24677976 + AluSx SINE Alu 201 271 -39 207 0 0 0 chrY 26835608 26835631 -24677953 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 549 144 0 76 chrY 26835631 26835668 -24677916 + AluSx SINE Alu 271 309 -1 1492 176 41 31 chrY 26835755 26836045 -24677539 - AluJo SINE Alu -18 294 2 599 164 7 114 chrY 26836068 26836208 -24677376 - FLAM_C SINE Alu -18 125 1 2342 92 0 3 chrY 26836280 26836574 -24677010 + AluY SINE Alu 1 293 -18 464 241 173 23 chrY 26836581 26836888 -24676696 - L1MC5 LINE L1 -305 7656 7304 305 324 108 17 chrY 26837033 26837089 -24676495 - L1MC4a LINE L1 -1564 6244 6195 1861 180 0 0 chrY 26837089 26837389 -24676195 + AluJb SINE Alu 1 300 -12 305 324 108 17 chrY 26837389 26837508 -24676076 - L1MC4a LINE L1 -1613 6195 6053 853 160 25 6 chrY 26837588 26837914 -24675670 + (TATATG)n Simple_repeat Simple_repeat 1 332 0 265 120 0 0 chrY 26837914 26837964 -24675620 + L1MC4 LINE L1 6653 6702 -1340 840 174 0 20 chrY 26837968 26838314 -24675270 + (TATATG)n Simple_repeat Simple_repeat 1 339 0 327 253 0 22 chrY 26838334 26838425 -24675159 + L1MC4 LINE L1 6615 6703 -1339 394 152 22 22 chrY 26838427 26838519 -24675065 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 543 269 175 39 chrY 26838520 26838828 -24674756 + MER115 DNA AcHobo 54 403 -290 607 169 0 34 chrY 26838845 26838963 -24674621 + MER115 DNA AcHobo 511 624 -69 852 185 25 6 chrY 26840052 26840214 -24673370 - FRAM SINE Alu -1 175 11 41933 60 8 3 chrY 26840281 26846405 -24667179 + L1PA3 LINE L1 1 6155 0 416 322 65 11 chrY 26847042 26847303 -24666281 + L2 LINE L2 2010 2284 -1030 1601 181 4 4 chrY 26847329 26847600 -24665984 - AluJb SINE Alu -39 273 3 1190 285 59 42 chrY 26847600 26848965 -24664619 - L1ME LINE L1 -4821 1394 70 1625 194 0 3 chrY 26849200 26849505 -24664079 + AluJb SINE Alu 1 304 0 435 195 53 26 chrY 26849630 26849743 -24663841 + MLT1J2 LTR MaLR 3 118 -332 534 288 94 11 chrY 26849797 26849994 -24663590 + MLT1J2 LTR MaLR 238 448 -2 692 207 100 2 chrY 26850349 26850517 -24663067 + L1PA16 LINE L1 5975 6160 -3 1083 176 20 0 chrY 26850773 26850972 -24662612 - L1MA4A LINE L1 -23 6280 6078 934 237 7 65 chrY 26851043 26851351 -24662233 - L1MA10 LINE L1 -13 6321 6032 522 234 257 0 chrY 26851662 26851833 -24661751 - MIR SINE MIR -33 229 15 527 250 8 0 chrY 26851898 26852018 -24661566 - MIR SINE MIR -65 197 77 2635 51 0 0 chrY 26853448 26853759 -24659825 + AluY SINE Alu 1 311 0 1627 200 3 3 chrY 26854186 26854491 -24659093 + AluJb SINE Alu 2 306 -6 268 265 0 15 chrY 26854501 26854569 -24659015 - MIR3 SINE MIR -32 176 110 350 190 114 0 chrY 26854635 26854714 -24658870 - MIR SINE MIR -60 148 61 1735 180 7 16 chrY 26854826 26855132 -24658452 - AluJo SINE Alu -9 303 1 461 292 58 27 chrY 26855675 26856221 -24657363 + L1MC/D LINE L1 4928 5483 -750 827 176 13 13 chrY 26856243 26856396 -24657188 + FAM SINE Alu 1 44 -5 1016 111 0 7 chrY 26856444 26856579 -24657005 - AluSq/x SINE Alu -178 134 1 1858 142 80 3 chrY 26856690 26857001 -24656583 - MER1B DNA MER1_type -2 335 1 1071 146 0 0 chrY 26857749 26857914 -24655670 + AluJb SINE Alu 137 301 -11 475 219 81 8 chrY 26858114 26858237 -24655347 - L1MB3 LINE L1 -3 6180 6049 2158 127 0 0 chrY 26858502 26858801 -24654783 + AluSx SINE Alu 1 299 -13 287 259 171 19 chrY 26858981 26859139 -24654445 - MIR SINE MIR -79 183 2 1653 161 7 11 chrY 26859288 26859561 -24654023 - AluJb SINE Alu -40 272 1 717 203 0 8 chrY 26859569 26859692 -24653892 - FLAM_C SINE Alu -19 124 3 22 0 0 0 chrY 26860959 26860981 -24652603 + AT_rich Low_complexity Low_complexity 1 22 0 236 260 41 14 chrY 26861688 26861761 -24651823 + MIR SINE MIR 85 159 -103 252 259 93 28 chrY 26861888 26861996 -24651588 - L2 LINE L2 -1 3271 3157 787 254 91 5 chrY 26862242 26862451 -24651133 - L1ME1 LINE L1 -12 6154 5928 1051 164 23 143 chrY 26863089 26863473 -24650111 + LTR49 LTR ERV1 12 349 -246 325 203 203 49 chrY 26863510 26863653 -24649931 + LTR48 LTR ERV1 607 771 -16 2211 212 82 63 chrY 26863725 26864372 -24649212 + MER21B LTR ERV1 98 756 -107 1408 102 122 0 chrY 26866154 26866359 -24647225 + MER30 DNA MER1_type 1 230 0 1973 144 3 0 chrY 26867121 26867419 -24646165 - AluSx SINE Alu -13 299 1 809 181 7 0 chrY 26867531 26867669 -24645915 + L1MB4 LINE L1 5342 5480 -694 1501 195 34 3 chrY 26867678 26867976 -24645608 + AluJb SINE Alu 1 307 -5 946 189 0 0 chrY 26868010 26868174 -24645410 + FRAM SINE Alu 8 171 -5 3685 166 26 3 chrY 26868198 26868859 -24644725 + L1MB4 LINE L1 5477 6152 -28 633 197 51 0 chrY 26870307 26870424 -24643160 - AluJb SINE Alu -16 296 174 2105 144 0 0 chrY 26871181 26871515 -24642069 - AluSq SINE Alu 0 334 1 25 65 0 0 chrY 26872198 26872244 -24641340 + AT_rich Low_complexity Low_complexity 1 46 0 2288 119 0 0 chrY 26872435 26872738 -24640846 - AluSx SINE Alu -9 303 1 534 267 63 24 chrY 26874968 26875174 -24638410 - MIR SINE MIR -48 214 1 181 333 0 18 chrY 26875168 26875225 -24638359 + MIR SINE MIR 2 57 -205 * 198 257 83 46 chrY 26875674 26875783 -24637801 + L2 LINE L2 1429 1541 -1773 1280 179 28 123 chrY 26875947 26876265 -24637319 - AluJo SINE Alu -14 288 1 684 200 0 0 chrY 26876478 26876653 -24636931 + (GAATG)n Satellite Satellite 5 179 0 1107 112 0 0 chrY 26876682 26876861 -24636723 + (GAATG)n Satellite Satellite 2 180 0 200 182 0 0 chrY 26876864 26876897 -24636687 + (CGAAT)n Simple_repeat Simple_repeat 4 36 0 524 200 6 0 chrY 26876898 26877058 -24636526 + (GAATG)n Satellite Satellite 4 164 0 822 170 0 0 chrY 26877079 26877250 -24636334 + (GAATG)n Satellite Satellite 2 172 0 304 81 81 0 chrY 26877287 26877349 -24636235 - HSATII Satellite Satellite -57 113 47 789 176 4 0 chrY 26877358 26877592 -24635992 + (GAATG)n Satellite Satellite 1 235 0 954 211 4 2 chrY 26877605 26878137 -24635447 + (GAATG)n Satellite Satellite 1 533 0 1002 144 0 0 chrY 26878148 26878252 -24635332 + (GAATG)n Satellite Satellite 1 284 0 1002 144 0 0 chrY 26878252 26878432 -24635152 + (GAATG)n Satellite Satellite 1 180 0 198 150 0 0 chrY 26878543 26878583 -24635001 + (GAGTG)n Simple_repeat Simple_repeat 4 43 0 849 168 0 0 chrY 26878601 26878780 -24634804 + (GAATG)n Simple_repeat Simple_repeat 2 180 0 231 189 0 0 chrY 26878777 26878830 -24634754 + (CAAAT)n Simple_repeat Simple_repeat 3 55 0 * 1032 161 2 2 chrY 26878836 26879178 -24634406 + (GAATG)n Satellite Satellite 1 522 0 633 208 0 0 chrY 26879221 26879399 -24634185 + (GAGTG)n Simple_repeat Simple_repeat 1 178 0 885 182 7 3 chrY 26879418 26879734 -24633850 + (GAATG)n Satellite Satellite 1 317 0 261 229 14 0 chrY 26879734 26879804 -24633780 + (CGAAT)n Simple_repeat Simple_repeat 1 71 0 807 183 0 0 chrY 26879804 26879984 -24633600 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 239 176 0 15 chrY 26880023 26880091 -24633493 + (CGAAT)n Simple_repeat Simple_repeat 2 68 0 182 125 0 25 chrY 26880108 26880148 -24633436 - HSATII Satellite Satellite -87 83 45 317 175 0 12 chrY 26880303 26880383 -24633201 + (GAATG)n Satellite Satellite 2 80 0 555 206 0 0 chrY 26880420 26880575 -24633009 + (GAATG)n Satellite Satellite 2 156 0 733 202 4 12 chrY 26880609 26880802 -24632782 + (GAATG)n Satellite Satellite 1 229 -56 246 105 0 0 chrY 26880802 26880840 -24632744 + (CAAAT)n Simple_repeat Simple_repeat 3 40 0 733 202 4 12 chrY 26880840 26880897 -24632687 + (GAATG)n Satellite Satellite 229 285 0 765 194 0 0 chrY 26880900 26881080 -24632504 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 945 145 0 0 chrY 26881080 26881225 -24632359 + (GAGTG)n Simple_repeat Simple_repeat 1 324 0 945 145 0 0 chrY 26881225 26881404 -24632180 + (GAGTG)n Simple_repeat Simple_repeat 1 179 0 202 194 0 0 chrY 26881451 26881487 -24632097 + (CGAAT)n Simple_repeat Simple_repeat 4 39 0 834 196 0 0 chrY 26881489 26881833 -24631751 + (GAATG)n Satellite Satellite 1 344 0 338 231 7 0 chrY 26881818 26881961 -24631623 + (CGAAT)n Simple_repeat Simple_repeat 2 145 0 * 711 197 0 0 chrY 26881943 26882121 -24631463 + (GAATG)n Satellite Satellite 2 179 0 204 114 0 29 chrY 26882131 26882166 -24631418 - HSATII Satellite Satellite -130 40 7 747 203 2 0 chrY 26882166 26882654 -24630930 + (GAATG)n Satellite Satellite 1 489 0 320 234 6 0 chrY 26882615 26882782 -24630802 + (CGAAT)n Simple_repeat Simple_repeat 2 169 0 * 768 191 0 0 chrY 26882783 26882999 -24630585 + (GAGTG)n Simple_repeat Simple_repeat 1 216 0 242 219 9 0 chrY 26883027 26883132 -24630452 + (AATTG)n Simple_repeat Simple_repeat 3 108 0 * 780 173 0 0 chrY 26883108 26883287 -24630297 + (GAATG)n Simple_repeat Simple_repeat 2 180 0 197 228 0 31 chrY 26883264 26883391 -24630193 + (CGAAT)n Simple_repeat Simple_repeat 3 125 0 * 626 198 6 0 chrY 26883394 26883571 -24630013 + (GAGTG)n Simple_repeat Simple_repeat 1 178 0 297 198 0 0 chrY 26883559 26883645 -24629939 + (GAATG)n Satellite Satellite 2 87 0 * 619 193 17 0 chrY 26883656 26883832 -24629752 + (GAATG)n Satellite Satellite 2 180 0 359 202 9 0 chrY 26883873 26883987 -24629597 + (GAATG)n Satellite Satellite 1 115 0 738 169 0 0 chrY 26884018 26884184 -24629400 + (GAATG)n Satellite Satellite 2 167 0 369 213 13 7 chrY 26884309 26884464 -24629120 + (GAATG)n Simple_repeat Simple_repeat 2 157 0 263 179 15 0 chrY 26884507 26884574 -24629010 + (GAGTG)n Simple_repeat Simple_repeat 1 68 0 738 179 0 0 chrY 26884608 26884781 -24628803 + (GAGTG)n Simple_repeat Simple_repeat 4 176 0 210 207 0 0 chrY 26884774 26884832 -24628752 + (CGAAT)n Simple_repeat Simple_repeat 2 59 0 * 828 194 4 0 chrY 26884933 26885188 -24628396 + (GAATG)n Satellite Satellite 1 256 0 441 234 0 0 chrY 26885201 26885359 -24628225 + (GAATG)n Satellite Satellite 2 159 0 756 171 0 0 chrY 26885391 26885555 -24628029 + (GAGTG)n Simple_repeat Simple_repeat 1 164 0 620 182 6 0 chrY 26885591 26885767 -24627817 + (GAATG)n Satellite Satellite 3 179 0 564 202 4 0 chrY 26885782 26886017 -24627567 + (GAATG)n Satellite Satellite 1 236 0 219 191 0 0 chrY 26886003 26886066 -24627518 + (CGAAT)n Simple_repeat Simple_repeat 2 64 0 * 489 241 0 0 chrY 26886122 26886292 -24627292 + (GAATG)n Satellite Satellite 1 170 0 996 128 0 0 chrY 26886307 26886486 -24627098 + (GAATG)n Satellite Satellite 2 180 0 271 222 17 0 chrY 26886492 26886609 -24626975 + (CGAAT)n Simple_repeat Simple_repeat 2 120 0 280 254 0 0 chrY 26886615 26886682 -24626902 + (GAATG)n Simple_repeat Simple_repeat 4 70 0 618 198 0 0 chrY 26886683 26886860 -24626724 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 410 252 0 0 chrY 26886865 26886968 -24626616 + (GAATG)n Simple_repeat Simple_repeat 3 105 0 255 202 0 0 chrY 26886980 26887069 -24626515 + (GAATG)n Simple_repeat Simple_repeat 1 89 0 831 161 0 0 chrY 26887104 26887284 -24626300 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 279 261 11 0 chrY 26887286 26887408 -24626176 + (CGAAT)n Simple_repeat Simple_repeat 1 123 0 329 136 15 0 chrY 26887411 26887477 -24626107 + (GAGTG)n Simple_repeat Simple_repeat 1 67 0 633 208 0 0 chrY 26887512 26887685 -24625899 + (GAGTG)n Simple_repeat Simple_repeat 4 176 0 183 204 0 0 chrY 26887683 26887732 -24625852 + (CGAAT)n Simple_repeat Simple_repeat 2 50 0 * 705 194 0 0 chrY 26887819 26887994 -24625590 + (GAATG)n Satellite Satellite 3 177 0 363 228 0 0 chrY 26888071 26888194 -24625390 + (GAATG)n Satellite Satellite 2 124 0 207 125 0 0 chrY 27088621 27088661 -24424923 + (GAATG)n Satellite Satellite 3 42 0 681 179 2 2 chrY 27088674 27089180 -24424404 + (GAATG)n Satellite Satellite 1 506 0 706 132 0 53 chrY 27089234 27089423 -24424161 + (GAATG)n Satellite Satellite 1 179 0 852 169 0 2 chrY 27089512 27090367 -24423217 + (GAATG)n Satellite Satellite 1 852 0 731 177 5 11 chrY 27090408 27091059 -24422525 + (GAATG)n Satellite Satellite 1 647 0 954 115 0 0 chrY 27091084 27091249 -24422335 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chrY 27091267 27091307 -24422277 + (GAATG)n Satellite Satellite 1 40 0 663 192 0 10 chrY 27091332 27091849 -24421735 + (GAATG)n Satellite Satellite 1 511 0 664 158 6 6 chrY 27091882 27092059 -24421525 + (GAATG)n Satellite Satellite 4 180 0 852 169 1 12 chrY 27092113 27093261 -24420323 + (GAATG)n Satellite Satellite 1 1135 0 698 176 5 11 chrY 27093302 27093955 -24419629 + (GAATG)n Satellite Satellite 1 649 0 1044 109 0 0 chrY 27093978 27094153 -24419431 + (GAATG)n Satellite Satellite 4 178 0 623 184 8 0 chrY 27094171 27094444 -24419140 + (GAATG)n Satellite Satellite 1 275 0 279 202 0 0 chrY 27094489 27094573 -24419011 + (GAATG)n Satellite Satellite 2 85 0 747 173 0 0 chrY 27094620 27094927 -24418657 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 27094939 27095117 -24418467 + (GAATG)n Satellite Satellite 3 180 0 664 180 4 2 chrY 27095130 27095650 -24417934 + (GAATG)n Satellite Satellite 1 521 0 727 127 0 53 chrY 27095704 27095893 -24417691 + (GAATG)n Satellite Satellite 1 179 0 677 188 0 18 chrY 27095946 27096229 -24417355 + (GAATG)n Satellite Satellite 1 278 0 843 167 0 2 chrY 27096240 27096852 -24416732 + (GAATG)n Satellite Satellite 1 610 0 685 178 5 11 chrY 27096893 27097546 -24416038 + (GAATG)n Satellite Satellite 1 649 0 921 121 0 0 chrY 27097569 27097734 -24415850 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chrY 27097752 27097792 -24415792 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 27097817 27098151 -24415433 + (GAATG)n Satellite Satellite 1 334 0 714 176 0 0 chrY 27098198 27098505 -24415079 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 27098517 27098695 -24414889 + (GAATG)n Satellite Satellite 3 180 0 681 178 2 2 chrY 27098708 27099229 -24414355 + (GAATG)n Satellite Satellite 1 521 0 852 168 1 12 chrY 27099291 27100436 -24413148 + (GAATG)n Satellite Satellite 1 1131 0 731 175 5 11 chrY 27100477 27101128 -24412456 + (GAATG)n Satellite Satellite 1 647 0 954 115 0 0 chrY 27101153 27101318 -24412266 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chrY 27101336 27101376 -24412208 + (GAATG)n Satellite Satellite 1 40 0 630 209 0 0 chrY 27101401 27101735 -24411849 + (GAATG)n Satellite Satellite 1 334 0 747 165 0 0 chrY 27101782 27102276 -24411308 + (GAATG)n Satellite Satellite 1 494 0 681 181 2 2 chrY 27102292 27102798 -24410786 + (GAATG)n Satellite Satellite 1 506 0 756 173 0 0 chrY 27102832 27103011 -24410573 + (GAATG)n Satellite Satellite 1 179 0 208 172 16 16 chrY 27103022 27103086 -24410498 + (GAATG)n Satellite Satellite 1 64 0 753 166 0 2 chrY 27103130 27103545 -24410039 + (GAATG)n Satellite Satellite 1 413 0 852 177 0 2 chrY 27103562 27104000 -24409584 + (GAATG)n Satellite Satellite 1 436 0 731 176 5 11 chrY 27104041 27104694 -24408890 + (GAATG)n Satellite Satellite 1 649 0 1062 107 0 0 chrY 27104720 27104897 -24408687 + (GAATG)n Satellite Satellite 4 180 0 186 150 0 0 chrY 27104915 27104955 -24408629 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 27104980 27105314 -24408270 + (GAATG)n Satellite Satellite 1 334 0 747 176 0 0 chrY 27105361 27105668 -24407916 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chrY 27105680 27105858 -24407726 + (GAATG)n Satellite Satellite 3 180 0 681 180 2 2 chrY 27105871 27106392 -24407192 + (GAATG)n Satellite Satellite 1 521 0 885 168 1 12 chrY 27106446 27107594 -24405990 + (GAATG)n Satellite Satellite 1 1135 0 718 175 5 11 chrY 27107635 27108288 -24405296 + (GAATG)n Satellite Satellite 1 649 0 1062 107 0 0 chrY 27108314 27108491 -24405093 + (GAATG)n Satellite Satellite 4 180 0 186 150 0 0 chrY 27108509 27108549 -24405035 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 27108574 27108908 -24404676 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chrY 27108955 27109262 -24404322 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 27109274 27109452 -24404132 + (GAATG)n Satellite Satellite 3 180 0 681 180 2 2 chrY 27109465 27109986 -24403598 + (GAATG)n Satellite Satellite 1 521 0 727 170 2 27 chrY 27110040 27110493 -24403091 + (GAATG)n Satellite Satellite 1 441 0 837 171 0 2 chrY 27110520 27111188 -24402396 + (GAATG)n Satellite Satellite 1 666 0 731 175 5 11 chrY 27111229 27111882 -24401702 + (GAATG)n Satellite Satellite 1 649 0 783 161 0 0 chrY 27111913 27112093 -24401491 + (GAATG)n Satellite Satellite 1 180 0 663 206 0 0 chrY 27112133 27112467 -24401117 + (GAATG)n Satellite Satellite 1 334 0 759 165 0 8 chrY 27112514 27113093 -24400491 + (GAATG)n Satellite Satellite 1 574 0 446 192 0 28 chrY 27113153 27113335 -24400249 + (GAATG)n Satellite Satellite 4 180 0 598 169 6 6 chrY 27113368 27113545 -24400039 + (GAATG)n Satellite Satellite 4 180 0 685 169 2 27 chrY 27113599 27114052 -24399532 + (GAATG)n Satellite Satellite 1 441 0 837 180 1 4 chrY 27114079 27115044 -24398540 + (GAATG)n Satellite Satellite 1 961 0 718 165 3 18 chrY 27115099 27115441 -24398143 + (GAATG)n Satellite Satellite 1 336 0 909 119 0 0 chrY 27115464 27115624 -24397960 + (GAATG)n Satellite Satellite 4 163 0 186 150 0 0 chrY 27115642 27115682 -24397902 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 27115707 27116041 -24397543 + (GAATG)n Satellite Satellite 1 334 0 698 173 3 0 chrY 27116088 27116394 -24397190 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 27116406 27116584 -24397000 + (GAATG)n Satellite Satellite 3 180 0 681 173 2 2 chrY 27116597 27117129 -24396455 + (GAATG)n Satellite Satellite 1 532 0 727 165 2 27 chrY 27117172 27117625 -24395959 + (GAATG)n Satellite Satellite 1 441 0 774 162 0 0 chrY 27117652 27117831 -24395753 + (GAATG)n Satellite Satellite 2 180 0 840 169 0 2 chrY 27117848 27118287 -24395297 + (GAATG)n Satellite Satellite 1 437 0 777 173 4 9 chrY 27118346 27119165 -24394419 + (GAATG)n Satellite Satellite 1 814 0 186 150 0 0 chrY 27119185 27119225 -24394359 + (GAATG)n Satellite Satellite 1 40 0 600 210 0 0 chrY 27119246 27119569 -24394015 + (GAATG)n Satellite Satellite 1 323 0 698 173 3 0 chrY 27119616 27119922 -24393662 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 27119934 27120112 -24393472 + (GAATG)n Satellite Satellite 3 180 0 685 180 2 2 chrY 27120125 27120646 -24392938 + (GAATG)n Satellite Satellite 1 521 0 727 180 2 30 chrY 27120700 27121225 -24392359 + (GAATG)n Satellite Satellite 1 510 0 852 172 2 8 chrY 27121236 27122542 -24391042 + (GAATG)n Satellite Satellite 1 1297 0 966 118 0 0 chrY 27122565 27122735 -24390849 + (GAATG)n Satellite Satellite 4 173 0 186 150 0 0 chrY 27122753 27122793 -24390791 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 27122818 27123152 -24390432 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chrY 27123199 27123506 -24390078 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chrY 27123518 27123696 -24389888 + (GAATG)n Satellite Satellite 3 180 0 664 182 2 2 chrY 27123709 27124230 -24389354 + (GAATG)n Satellite Satellite 1 521 0 852 162 1 14 chrY 27124284 27125173 -24388411 + (GAATG)n Satellite Satellite 1 877 0 705 171 0 0 chrY 27125239 27125414 -24388170 + (GAATG)n Satellite Satellite 2 176 0 700 176 4 11 chrY 27125473 27126007 -24387577 + (GAATG)n Satellite Satellite 1 530 0 271 185 9 9 chrY 27126018 27126126 -24387458 + (GAATG)n Satellite Satellite 2 109 0 999 112 0 0 chrY 27126149 27126319 -24387265 + (GAATG)n Satellite Satellite 4 173 0 186 150 0 0 chrY 27126337 27126377 -24387207 + (GAATG)n Satellite Satellite 1 40 0 623 205 0 3 chrY 27126402 27126737 -24386847 + (GAATG)n Satellite Satellite 1 333 0 747 173 0 0 chrY 27126784 27127091 -24386493 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chrY 27127103 27127281 -24386303 + (GAATG)n Satellite Satellite 3 180 0 681 178 2 2 chrY 27127294 27127815 -24385769 + (GAATG)n Satellite Satellite 1 521 0 727 127 0 53 chrY 27127869 27128058 -24385526 + (GAATG)n Satellite Satellite 1 179 0 644 187 0 18 chrY 27128111 27128394 -24385190 + (GAATG)n Satellite Satellite 1 277 0 852 168 0 3 chrY 27128405 27129018 -24384566 + (GAATG)n Satellite Satellite 1 611 0 731 175 5 11 chrY 27129059 27129712 -24383872 + (GAATG)n Satellite Satellite 1 649 0 1029 113 0 0 chrY 27129738 27129915 -24383669 + (GAATG)n Satellite Satellite 4 180 0 186 150 0 0 chrY 27129933 27129973 -24383611 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 27129998 27130332 -24383252 + (GAATG)n Satellite Satellite 1 334 0 714 176 0 0 chrY 27130379 27130686 -24382898 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 27130698 27130876 -24382708 + (GAATG)n Satellite Satellite 3 180 0 648 183 0 0 chrY 27130889 27131125 -24382459 + (GAATG)n Satellite Satellite 1 236 0 639 179 0 0 chrY 27131148 27131327 -24382257 + (GAATG)n Satellite Satellite 2 180 0 900 153 3 3 chrY 27131343 27131696 -24381888 + (GAATG)n Satellite Satellite 1 353 0 945 123 0 0 chrY 27131740 27131910 -24381674 + (GAATG)n Satellite Satellite 4 173 0 186 150 0 0 chrY 27131928 27131968 -24381616 + (GAATG)n Satellite Satellite 1 40 0 663 203 3 0 chrY 27131993 27132326 -24381258 + (GAATG)n Satellite Satellite 1 334 0 235 241 0 52 chrY 27132369 27132485 -24381099 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 690 161 0 0 chrY 27132609 27132783 -24380801 + (GAATG)n Satellite Satellite 1 174 0 276 164 0 0 chrY 27132804 27132871 -24380713 + (GAATG)n Satellite Satellite 3 69 0 696 169 0 0 chrY 27132883 27133061 -24380523 + (GAATG)n Satellite Satellite 3 180 0 681 180 2 2 chrY 27133074 27133595 -24379989 + (GAATG)n Satellite Satellite 1 521 0 852 170 2 12 chrY 27133649 27134795 -24378789 + (GAATG)n Satellite Satellite 1 1134 0 663 178 5 11 chrY 27134836 27135489 -24378095 + (GAATG)n Satellite Satellite 1 649 0 795 156 0 0 chrY 27135526 27135705 -24377879 + (GAATG)n Satellite Satellite 1 179 0 663 206 0 0 chrY 27135730 27136064 -24377520 + (GAATG)n Satellite Satellite 1 334 0 759 173 0 0 chrY 27136111 27136418 -24377166 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 27136430 27136608 -24376976 + (GAATG)n Satellite Satellite 3 180 0 681 179 2 2 chrY 27136621 27137127 -24376457 + (GAATG)n Satellite Satellite 1 506 0 706 132 0 53 chrY 27137181 27137370 -24376214 + (GAATG)n Satellite Satellite 1 179 0 852 158 0 2 chrY 27137459 27138070 -24375514 + (GAATG)n Satellite Satellite 1 609 0 718 180 2 12 chrY 27138136 27139023 -24374561 + (GAATG)n Satellite Satellite 1 878 0 1002 120 0 0 chrY 27139046 27139221 -24374363 + (GAATG)n Satellite Satellite 4 178 0 186 150 0 0 chrY 27139239 27139279 -24374305 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 27139304 27139638 -24373946 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chrY 27139685 27139992 -24373592 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 27140004 27140182 -24373402 + (GAATG)n Satellite Satellite 3 180 0 681 178 2 2 chrY 27140195 27140716 -24372868 + (GAATG)n Satellite Satellite 1 521 0 783 152 0 0 chrY 27140765 27140929 -24372655 + (GAATG)n Satellite Satellite 1 164 0 208 172 16 16 chrY 27140940 27141004 -24372580 + (GAATG)n Satellite Satellite 1 64 0 843 168 0 2 chrY 27141048 27141918 -24371666 + (GAATG)n Satellite Satellite 1 867 0 710 180 2 10 chrY 27141989 27142612 -24370972 + (GAATG)n Satellite Satellite 1 617 0 954 115 0 0 chrY 27142635 27142800 -24370784 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chrY 27142818 27142858 -24370726 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 27142883 27143217 -24370367 + (GAATG)n Satellite Satellite 1 334 0 726 176 0 0 chrY 27143264 27143571 -24370013 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chrY 27143583 27143761 -24369823 + (GAATG)n Satellite Satellite 3 180 0 681 182 2 2 chrY 27143774 27144295 -24369289 + (GAATG)n Satellite Satellite 1 521 0 804 173 1 13 chrY 27144349 27145392 -24368192 + (GAATG)n Satellite Satellite 1 1030 0 279 193 0 0 chrY 27145424 27145512 -24368072 + (GAATG)n Satellite Satellite 2 89 0 286 167 167 24 chrY 27345558 27345642 -24167942 + MLT1I LTR MaLR 281 376 -33 787 219 71 5 chrY 27345661 27345898 -24167686 + L1MC5 LINE L1 6999 7249 -728 1250 192 60 121 chrY 27345902 27346610 -24166974 + L1MC5 LINE L1 7238 7827 -134 720 271 4 65 chrY 27346614 27346861 -24166723 - L2 LINE L2 -859 2455 2224 1103 283 27 11 chrY 27346976 27347351 -24166233 + L1MC4a LINE L1 5519 5899 -1909 217 250 0 0 chrY 27347384 27347428 -24166156 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 743 293 57 0 chrY 27347669 27347881 -24165703 + MIR SINE MIR 13 236 -26 2265 79 28 3 chrY 27348008 27348298 -24165286 - AluSq SINE Alu -16 297 1 753 337 118 18 chrY 27348553 27348995 -24164589 - L3 LINE CR1 -7 1570 1085 578 233 105 57 chrY 27349632 27349860 -24163724 + L2 LINE L2 2035 2273 -1041 371 305 92 7 chrY 27350127 27350422 -24163162 - L1M4 LINE L1 -2382 3764 3445 627 292 21 7 chrY 27350518 27350802 -24162782 - L1M4 LINE L1 -3582 2564 2277 1610 222 50 18 chrY 27350809 27351007 -24162577 + MER97b DNA MER1_type? 182 372 -681 2800 126 21 2 chrY 27351007 27351427 -24162157 + MSTA LTR MaLR 1 428 0 1610 222 50 18 chrY 27351427 27351624 -24161960 + MER97b DNA MER1_type? 372 590 -463 5596 97 10 8 chrY 27351624 27352443 -24161141 + L1PB3 LINE L1 5335 6154 0 869 201 47 44 chrY 27352453 27352727 -24160857 + MER97a DNA MER1_type? 596 870 -24 2897 176 58 11 chrY 27352746 27353280 -24160304 - MER21B LTR ERV1 -30 833 275 1254 209 21 86 chrY 27353280 27353333 -24160251 - L1ME LINE L1 -353 5813 5758 2167 108 10 0 chrY 27353333 27353628 -24159956 - AluSx SINE Alu -14 298 1 1254 209 21 86 chrY 27353628 27353818 -24159766 - L1ME LINE L1 -408 5758 5601 2316 112 0 0 chrY 27353818 27354131 -24159453 + AluSq SINE Alu 1 313 0 1254 209 21 86 chrY 27354131 27354268 -24159316 - L1ME LINE L1 -565 5601 5457 1900 205 101 19 chrY 27354477 27354990 -24158594 - L1ME LINE L1 -850 5296 4742 4765 230 85 32 chrY 27355992 27356633 -24156951 - L1ME LINE L1 -1390 4756 4151 2169 101 40 0 chrY 27356633 27356959 -24156625 - L1MA1 LINE L1 -6 6296 5958 4765 230 85 32 chrY 27356959 27358020 -24155564 - L1ME LINE L1 -1995 4151 2963 300 122 0 20 chrY 27358260 27358309 -24155275 - L1PB4 LINE L1 -30 6126 6079 825 173 0 0 chrY 27358327 27358454 -24155130 - FLAM_C SINE Alu -6 127 1 3143 204 46 1 chrY 27358455 27359201 -24154383 - L1ME LINE L1 -3171 2975 2197 1192 329 61 79 chrY 27359658 27360585 -24152999 - L2 LINE L2 -50 3222 2280 2473 56 0 31 chrY 27360585 27360904 -24152680 + AluY SINE Alu 1 309 -2 7363 15 0 1 chrY 27360904 27361773 -24151811 + L1PA3 LINE L1 5311 6155 0 1192 329 61 79 chrY 27361773 27362149 -24151435 - L2 LINE L2 -990 2282 1945 498 265 152 30 chrY 27362215 27362445 -24151139 + MIR SINE MIR 4 261 -1 215 255 0 0 chrY 27362752 27362803 -24150781 - L2 LINE L2 -2885 429 379 201 256 0 0 chrY 27362909 27362948 -24150636 + L2 LINE L2 3265 3303 -10 2488 282 90 5 chrY 27363009 27363941 -24149643 - L2 LINE L2 -157 3156 1990 637 265 45 83 chrY 27364112 27364425 -24149159 + LTR16C LTR ERVL 160 460 -31 645 236 37 6 chrY 27364445 27364606 -24148978 - L2 LINE L2 -1323 1991 1826 663 263 180 25 chrY 27364608 27364924 -24148660 - L2 LINE L2 -1901 1413 1049 340 281 22 0 chrY 27365016 27365105 -24148479 + MER94 DNA DNA 44 134 0 228 254 0 36 chrY 27365141 27365196 -24148388 + MIR SINE MIR 13 65 -197 24 85 0 0 chrY 27365965 27366024 -24147560 + AT_rich Low_complexity Low_complexity 1 59 0 234 174 0 22 chrY 27366898 27366944 -24146640 - MIR SINE MIR -110 152 108 495 323 1 0 chrY 27366964 27367112 -24146472 + MIR SINE MIR 2 151 -57 380 202 75 11 chrY 27367117 27367211 -24146373 - MER5B DNA MER1_type -6 172 73 262 121 17 17 chrY 27367428 27367486 -24146098 + CT-rich Low_complexity Low_complexity 1 58 0 494 277 20 40 chrY 27369687 27369835 -24143749 + MIR3 SINE MIR 33 177 -31 183 218 0 73 chrY 27369803 27369858 -24143726 + L3 LINE CR1 1519 1569 -8 * 1069 263 22 0 chrY 27370377 27370609 -24142975 + MIR SINE MIR 22 258 -4 423 38 0 0 chrY 27370911 27370964 -24142620 + (TA)n Simple_repeat Simple_repeat 2 54 0 890 257 0 29 chrY 27372528 27372734 -24140850 + MIR3 SINE MIR 5 204 -4 188 182 23 0 chrY 27373257 27373301 -24140283 + GA-rich Low_complexity Low_complexity 4 48 0 297 0 0 0 chrY 27375258 27375291 -24138293 + (TA)n Simple_repeat Simple_repeat 2 34 0 317 266 0 89 chrY 27376524 27376648 -24136936 + MIR3 SINE MIR 64 176 -32 288 0 0 0 chrY 27377943 27377975 -24135609 + (GA)n Simple_repeat Simple_repeat 1 32 0 446 331 86 0 chrY 27379087 27379238 -24134346 + MIR3 SINE MIR 41 204 -4 22 0 0 0 chrY 27380284 27380306 -24133278 + AT_rich Low_complexity Low_complexity 1 22 0 202 261 0 0 chrY 27380330 27380376 -24133208 + (CG)n Simple_repeat Simple_repeat 2 47 0 324 0 0 0 chrY 27380664 27380700 -24132884 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 762 198 0 4 chrY 27380819 27381078 -24132506 + CT-rich Low_complexity Low_complexity 1 257 0 236 189 19 19 chrY 27381754 27381807 -24131777 - L2 LINE L2 0 3313 3261 192 283 81 30 chrY 27381996 27382095 -24131489 + MIR SINE MIR 42 145 -63 530 279 68 26 chrY 27382096 27382286 -24131298 + MIR3 SINE MIR 2 199 -9 195 246 0 0 chrY 27382412 27382469 -24131115 + (TG)n Simple_repeat Simple_repeat 2 58 0 301 204 0 0 chrY 27382566 27382620 -24130964 - L2 LINE L2 -3 3310 3257 182 288 15 15 chrY 27382644 27382710 -24130874 + MIR SINE MIR 50 115 -147 239 278 261 0 chrY 27382984 27383099 -24130485 - L2 LINE L2 0 3272 3128 * 1064 241 13 8 chrY 27383093 27383330 -24130254 - MIR SINE MIR -24 238 1 2072 163 31 3 chrY 27383390 27383745 -24129839 + MLT1A1 LTR MaLR 1 365 0 356 278 74 137 chrY 27383747 27384046 -24129538 + L2 LINE L2 2993 3272 0 404 219 9 57 chrY 27384316 27384421 -24129163 - MIR3 SINE MIR -94 114 15 3482 109 10 23 chrY 27385342 27385918 -24127666 - L1PA16 LINE L1 -84 6082 5448 319 284 3 14 chrY 27386368 27386447 -24127137 - MIR SINE MIR -123 85 5 3232 97 16 16 chrY 27386723 27387209 -24126375 + L1PA16 LINE L1 5353 5838 -328 1926 165 0 23 chrY 27387680 27388025 -24125559 + MER1B DNA MER1_type 1 337 0 447 229 76 17 chrY 27388224 27388342 -24125242 + MIR SINE MIR 28 152 -110 273 284 12 25 chrY 27388609 27388690 -24124894 - L2 LINE L2 -191 3081 3002 239 203 152 51 chrY 27388922 27389001 -24124583 - L2 LINE L2 0 3272 3186 1548 117 164 8 chrY 27389255 27389511 -24124073 + AluSg1 SINE Alu 1 296 -13 267 258 15 0 chrY 27390230 27390296 -24123288 + MIR SINE MIR 73 139 -69 211 222 0 0 chrY 27390396 27390441 -24123143 + L2 LINE L2 3269 3313 0 209 348 0 0 chrY 27390588 27390657 -24122927 - L2 LINE L2 -697 2617 2549 446 316 13 32 chrY 27390788 27390943 -24122641 - MER5A DNA MER1_type -2 187 36 335 250 12 0 chrY 27391024 27391104 -24122480 + L2 LINE L2 2234 2314 -1000 1449 271 35 28 chrY 27391135 27391686 -24121898 - L2 LINE L2 -226 3087 2529 719 286 97 4 chrY 27392944 27393171 -24120413 - MIR SINE MIR -12 250 3 4844 191 28 15 chrY 27393613 27395501 -24118083 + L1MB7 LINE L1 4277 6182 -2 1065 264 92 9 chrY 27395577 27396045 -24117539 - L1MC/D LINE L1 -778 5405 5254 351 278 28 81 chrY 27396395 27396592 -24116992 - HAL1 LINE L1 -1055 1452 1269 378 0 0 0 chrY 27396592 27396634 -24116950 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 351 278 28 81 chrY 27396634 27396684 -24116900 - HAL1 LINE L1 -1238 1269 1218 531 316 49 84 chrY 27396879 27397345 -24116239 + LTR67 LTR ERVL 2 451 -106 1651 271 80 13 chrY 27397353 27397888 -24115696 + L2 LINE L2 822 1392 -1922 1849 262 42 62 chrY 27397891 27398125 -24115459 + L2 LINE L2 1876 2113 -1201 2688 82 25 0 chrY 27398125 27398492 -24115092 - L1PA16 LINE L1 -9 6157 5782 1849 262 42 62 chrY 27398492 27398849 -24114735 + L2 LINE L2 2113 2455 -859 1121 335 45 12 chrY 27398849 27399362 -24114222 + L2 LINE L2 2770 3301 -12 580 230 223 0 chrY 27400489 27400754 -24112830 + MER5C DNA MER1_type 1 324 0 236 337 171 15 chrY 27401185 27401390 -24112194 + L3 LINE CR1 1336 1572 -5 536 270 86 0 chrY 27402765 27402928 -24110656 - MIR SINE MIR -2 260 84 496 128 108 0 chrY 27404640 27404742 -24108842 - L1MB4 LINE L1 -255 5925 5813 347 248 83 33 chrY 27404974 27405095 -24108489 - MIR SINE MIR -46 216 90 11481 181 18 2 chrY 27405286 27407515 -24106069 - L1PA12 LINE L1 -2701 4883 2618 5051 51 8 7 chrY 27407521 27408547 -24105037 - MER11A LTR ERVK 0 1266 1 4085 243 29 43 chrY 27408549 27410133 -24103451 - L1PA12 LINE L1 -4960 2624 7 1006 262 38 26 chrY 27410137 27410561 -24103023 - L1M4 LINE L1 -775 5371 4943 625 325 66 66 chrY 27410647 27411252 -24102332 + L2 LINE L2 2648 3252 -20 400 88 4 0 chrY 27411252 27411310 -24102274 + L1PA8A LINE L1 5711 5770 -361 * 3751 230 42 19 chrY 27411309 27413836 -24099748 + L1MCa LINE L1 831 3566 -2860 7188 122 50 48 chrY 27413836 27415100 -24098484 + Tigger1 DNA MER2_type 1 1266 -1152 436 192 8 8 chrY 27415125 27415245 -24098339 + (TA)n Simple_repeat Simple_repeat 1 120 0 15141 161 27 10 chrY 27415256 27416228 -24097356 - L1MA3 LINE L1 -11 7713 6759 2949 137 40 4 chrY 27416228 27416724 -24096860 - MER75 DNA T2_type 0 514 1 15141 161 27 10 chrY 27416724 27419732 -24093852 - L1MA3 LINE L1 -965 6759 3661 37270 80 6 11 chrY 27419735 27425754 -24087830 + L1PA6 LINE L1 145 6132 -22 21398 141 30 18 chrY 27425762 27426030 -24087554 - L1MA3 LINE L1 -3892 3673 3410 2077 125 7 0 chrY 27426030 27426319 -24087265 - AluSx SINE Alu -21 291 1 21398 141 30 18 chrY 27426319 27429658 -24083926 - L1MA3 LINE L1 -4155 3410 22 31 26 0 0 chrY 27430140 27430178 -24083406 + AT_rich Low_complexity Low_complexity 1 38 0 372 247 172 48 chrY 27430352 27430538 -24083046 + L1M4b LINE L1 21 229 -6630 3974 55 2 0 chrY 27430661 27431154 -24082430 + L1PA8 LINE L1 5662 6155 -17 2021 112 31 0 chrY 27431391 27431547 -24082037 - AluSx SINE Alu -16 296 125 405 0 0 0 chrY 27431547 27431592 -24081992 + (TA)n Simple_repeat Simple_repeat 2 46 0 2021 112 31 0 chrY 27431592 27431722 -24081862 - AluSx SINE Alu -187 125 1 251 282 0 13 chrY 27431744 27431822 -24081762 + L1M4b LINE L1 1111 1187 -5668 664 297 116 8 chrY 27431880 27432415 -24081169 + L1M4b LINE L1 1188 1780 -5075 * 19626 153 40 14 chrY 27432407 27435369 -24078215 + L1MA2 LINE L1 8 2892 -4831 880 54 0 0 chrY 27435369 27435480 -24078104 + L1PA8 LINE L1 6061 6171 -1 19626 153 40 14 chrY 27435480 27439616 -24073968 + L1MA2 LINE L1 2892 7288 -435 1807 129 40 20 chrY 27439619 27439968 -24073616 + L1MA2 LINE L1 7368 7723 0 1171 254 44 20 chrY 27439981 27440419 -24073165 + L1M4b LINE L1 1875 2380 -4577 2934 227 82 14 chrY 27440439 27441659 -24071925 + L1M4b LINE L1 2761 4029 -2928 3675 254 45 24 chrY 27441666 27444671 -24068913 - L1MCc LINE L1 -2584 4357 1121 20565 25 1 1 chrY 27444742 27447982 -24065602 + L1PA2 LINE L1 2936 6175 0 1954 103 6 69 chrY 27447984 27448303 -24065281 + AluSc SINE Alu 1 299 -10 294 302 123 74 chrY 27448372 27448820 -24064764 - L2 LINE L2 -1 3271 2782 1666 170 0 61 chrY 27448987 27449147 -24064437 - AluJo SINE Alu -19 293 160 2043 134 7 3 chrY 27449147 27449445 -24064139 - AluSp SINE Alu -14 299 1 1666 170 0 61 chrY 27449445 27449596 -24063988 - AluJo SINE Alu -152 160 1 24 0 0 0 chrY 27450652 27450676 -24062908 + AT_rich Low_complexity Low_complexity 1 24 0 2045 132 7 0 chrY 27450723 27451052 -24062532 - AluSx SINE Alu 0 312 1 503 186 0 0 chrY 27451069 27451171 -24062413 - FLAM_A SINE Alu -1 141 40 556 282 215 61 chrY 27451264 27451922 -24061662 + L2 LINE L2 2366 2921 -351 1792 137 7 4 chrY 27451922 27452192 -24061392 + AluSx SINE Alu 1 271 -41 1299 57 0 0 chrY 27452192 27452351 -24061233 + L1PA3 LINE L1 5990 6148 -7 556 282 215 61 chrY 27452351 27452451 -24061133 + L2 LINE L2 2920 3223 -49 544 171 0 0 chrY 27453656 27453744 -24059840 + FLAM_A SINE Alu 31 118 -24 29 28 0 0 chrY 27453744 27453780 -24059804 + AT_rich Low_complexity Low_complexity 1 36 0 1165 183 9 14 chrY 27453903 27454144 -24059440 - AluSq SINE Alu 0 313 80 356 294 98 25 chrY 27454330 27454493 -24059091 + L1M4 LINE L1 3406 3580 -2566 434 190 0 99 chrY 27454502 27454623 -24058961 - FLAM_A SINE Alu -13 129 21 546 138 0 0 chrY 27454656 27454736 -24058848 - AluJ/FLAM SINE Alu -232 80 1 339 342 19 0 chrY 27454736 27454897 -24058687 - L1M4 LINE L1 -2388 3758 3595 2153 98 0 24 chrY 27454903 27455200 -24058384 + AluY SINE Alu 1 290 -21 331 120 0 0 chrY 27455209 27455259 -24058325 + FRAM/FAM SINE Alu 20 69 -97 2172 115 7 0 chrY 27455501 27455797 -24057787 + AluSx SINE Alu 1 298 -14 379 275 144 25 chrY 27456196 27456356 -24057228 + MIR SINE MIR 80 258 -4 225 118 0 59 chrY 27456362 27456413 -24057171 - L1MB4 LINE L1 -1 6179 6132 340 135 14 40 chrY 27456550 27456623 -24056961 - MLT1F LTR MaLR -3 564 494 360 255 11 11 chrY 27456623 27456717 -24056867 + MLT1E LTR MaLR 1 94 -560 893 219 119 137 chrY 27456745 27457206 -24056378 + MLT1E LTR MaLR 78 530 -63 2140 136 10 0 chrY 27457209 27457519 -24056065 - AluSp SINE Alu 0 313 1 3339 90 4 0 chrY 27457525 27457982 -24055602 + L1PB1 LINE L1 5692 6150 -1 226 162 91 131 chrY 27458050 27458149 -24055435 + MLT1E LTR MaLR 499 593 0 1325 267 129 2 chrY 27458150 27458562 -24055022 - MLT1F LTR MaLR -78 464 1 319 205 8 31 chrY 27458584 27458711 -24054873 - L1M4 LINE L1 -2931 3215 3092 1379 178 6 122 chrY 27458745 27459082 -24054502 - AluJo SINE Alu -9 303 6 347 269 9 0 chrY 27459202 27459310 -24054274 - L1ME3A LINE L1 -11 6159 6051 523 240 46 6 chrY 27459810 27459985 -24053599 - L1MC4a LINE L1 -1910 5898 5717 1518 227 120 11 chrY 27459985 27460014 -24053570 + MLT1D LTR MaLR 1 25 -480 2143 119 0 0 chrY 27460014 27460307 -24053277 + AluY SINE Alu 1 293 -18 1518 227 120 11 chrY 27460307 27460727 -24052857 + MLT1D LTR MaLR 25 499 -6 701 251 117 12 chrY 27460739 27460986 -24052598 - L1MC4a LINE L1 -2083 5725 5453 369 0 0 0 chrY 27461688 27461729 -24051855 + (TG)n Simple_repeat Simple_repeat 2 42 0 2091 109 17 10 chrY 27461870 27462172 -24051412 - AluSq SINE Alu -9 304 1 238 294 81 19 chrY 27462845 27463005 -24050579 + MIR SINE MIR 57 226 -36 180 0 0 0 chrY 27463442 27463462 -24050122 + (TA)n Simple_repeat Simple_repeat 2 21 0 314 287 83 0 chrY 27463524 27463632 -24049952 + L2 LINE L2 3156 3272 0 230 226 59 49 chrY 27463766 27463868 -24049716 - MER106B DNA MER1_type -904 155 53 907 186 141 34 chrY 27464390 27464711 -24048873 - LTR37A LTR ERV1 0 426 56 1643 183 14 14 chrY 27464711 27464996 -24048588 + AluJb SINE Alu 2 286 -26 907 186 141 34 chrY 27464996 27465056 -24048528 - LTR37A LTR ERV1 -370 56 4 2194 106 3 10 chrY 27465206 27465499 -24048085 - AluSc SINE Alu -16 293 3 983 172 25 34 chrY 27465682 27465918 -24047666 + L1MB3 LINE L1 5676 5913 -256 305 251 63 64 chrY 27465937 27466225 -24047359 + MER39 LTR ERV1 23 520 -187 1306 176 181 20 chrY 27466228 27466632 -24046952 + LTR54B LTR ERV1 8 476 -22 225 214 0 0 chrY 27466706 27466748 -24046836 + MER34 LTR ERV1 370 411 -131 485 189 79 24 chrY 27466784 27466911 -24046673 + MER34 LTR ERV1 409 542 0 1222 127 21 38 chrY 27466911 27466970 -24046614 + L1MB3 LINE L1 5910 5968 -215 1555 190 30 14 chrY 27466970 27467265 -24046319 + AluJo SINE Alu 1 300 -12 1222 127 21 38 chrY 27467265 27467441 -24046143 + L1MB3 LINE L1 5968 6141 -42 1036 121 6 19 chrY 27467444 27467601 -24045983 + AluSc SINE Alu 135 289 -20 279 0 0 0 chrY 27467601 27467632 -24045952 + (TA)n Simple_repeat Simple_repeat 1 31 0 375 309 67 24 chrY 27467648 27467813 -24045771 - MIR SINE MIR -11 251 80 2064 135 0 0 chrY 27468212 27468509 -24045075 - AluSx SINE Alu -15 297 1 326 222 111 9 chrY 27470048 27470156 -24043428 - L1M3c LINE L1 -1530 4852 4734 1107 231 140 11 chrY 27470175 27470625 -24042959 - L1MC4 LINE L1 -1983 5993 5486 1218 241 113 38 chrY 27470628 27471339 -24042245 - L1MC4 LINE L1 -2665 3415 2652 267 280 65 0 chrY 27471358 27471465 -24042119 - L1MC4 LINE L1 -5906 164 51 1746 186 10 0 chrY 27471524 27471819 -24041765 - AluJb SINE Alu -14 298 1 431 260 65 103 chrY 27471836 27472179 -24041405 - L1M3c LINE L1 -2412 3970 3616 1927 171 0 0 chrY 27472179 27472472 -24041112 + AluJb SINE Alu 3 295 -17 431 260 65 103 chrY 27472472 27472538 -24041046 - L1M3c LINE L1 -2766 3616 3549 1904 163 0 0 chrY 27472538 27472827 -24040757 - AluJb SINE Alu -23 289 1 431 260 65 103 chrY 27472827 27472962 -24040622 - L1M3c LINE L1 -2833 3549 3438 792 241 0 0 chrY 27472966 27473128 -24040456 + AluJb SINE Alu 134 295 -17 351 268 153 33 chrY 27473131 27473255 -24040329 - L1M3c LINE L1 -2943 3439 3285 2082 89 89 0 chrY 27473255 27473535 -24040049 - AluSc SINE Alu -4 305 1 351 268 153 33 chrY 27473535 27473593 -24039991 - L1M3c LINE L1 -3097 3285 3235 1342 163 9 5 chrY 27473593 27473808 -24039776 + AluJb SINE Alu 85 300 -12 343 276 158 7 chrY 27473976 27474391 -24039193 - L1M3c LINE L1 -3382 3000 2518 198 0 0 0 chrY 27474391 27474413 -24039171 + (TG)n Simple_repeat Simple_repeat 2 23 0 963 239 52 45 chrY 27474424 27474692 -24038892 - AluJo SINE Alu -42 270 1 1351 209 45 33 chrY 27475158 27475710 -24037874 - L1MD2 LINE L1 -10 6349 5752 376 240 195 39 chrY 27475875 27476029 -24037555 - L1ME3A LINE L1 -8 6162 5985 500 78 0 0 chrY 27476033 27476097 -24037487 - AluS SINE Alu -248 65 2 947 173 7 0 chrY 27476116 27476266 -24037318 - AluJb SINE Alu -26 286 136 1116 256 97 33 chrY 27476286 27476552 -24037032 - L1ME3A LINE L1 -183 5987 5739 333 0 0 0 chrY 27476552 27476589 -24036995 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 2159 105 14 3 chrY 27476589 27477060 -24036524 - AluSq SINE Alu 0 474 1 1116 256 97 33 chrY 27477060 27477245 -24036339 - L1ME3A LINE L1 -430 5740 5505 2406 92 3 21 chrY 27477247 27477585 -24035999 - MER41A LTR ERV1 0 554 223 391 331 7 26 chrY 27477820 27478089 -24035495 - L1M3c LINE L1 -4528 1856 1593 325 353 29 0 chrY 27478105 27478244 -24035340 - L1M4 LINE L1 -5042 1342 1200 326 263 109 7 chrY 27478298 27478435 -24035149 - L1M3c LINE L1 -4820 1493 1343 22348 51 3 3 chrY 27479859 27483450 -24030134 - L1PA4 LINE L1 -2 6153 2558 1158 104 3 7 chrY 27483458 27497970 -24015614 + BSR/Beta Satellite Satellite 1 14458 -3 267 207 0 17 chrY 27497954 27498012 -24015572 + AluJ/FRAM SINE Alu 232 288 -14 * 491 168 18 0 chrY 27498012 27498125 -24015459 + (GAATG)n Simple_repeat Simple_repeat 2 116 0 379 156 31 0 chrY 27498125 27498189 -24015395 + AluS SINE Alu 223 288 -12 846 167 0 0 chrY 27498195 27498375 -24015209 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 365 191 29 0 chrY 27498387 27498455 -24015129 + AluS SINE Alu 223 292 -8 774 203 3 0 chrY 27498455 27498801 -24014783 + (GAATG)n Satellite Satellite 1 347 0 331 179 0 0 chrY 27498843 27498899 -24014685 + AluJ/FRAM SINE Alu 225 280 -22 672 150 0 0 chrY 27498902 27499029 -24014555 + (GAATG)n Simple_repeat Simple_repeat 5 131 0 307 200 0 0 chrY 27499040 27499095 -24014489 + AluJ/FRAM SINE Alu 225 279 -23 910 138 0 11 chrY 27499105 27499286 -24014298 + (GAGTG)n Simple_repeat Simple_repeat 2 180 0 306 87 0 0 chrY 27499287 27499333 -24014251 + (GAATG)n Simple_repeat Simple_repeat 5 50 0 582 146 0 0 chrY 27499371 27499481 -24014103 + (GAATG)n Simple_repeat Simple_repeat 1 110 0 374 191 29 0 chrY 27499493 27499561 -24014023 + AluJ/FRAM SINE Alu 225 294 -8 816 173 0 0 chrY 27499578 27499757 -24013827 + (GAATG)n Simple_repeat Simple_repeat 2 180 0 316 235 29 0 chrY 27499775 27499843 -24013741 + AluJ/FRAM SINE Alu 225 294 -8 226 135 0 0 chrY 27499843 27499880 -24013704 + (GAATG)n Simple_repeat Simple_repeat 1 37 0 915 161 0 0 chrY 27499885 27500065 -24013519 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 253 173 0 25 chrY 27500094 27500175 -24013409 + (GAATG)n Simple_repeat Simple_repeat 3 81 0 328 206 29 0 chrY 27500189 27500257 -24013327 + AluS SINE Alu 224 293 -8 495 118 0 0 chrY 27500258 27500343 -24013241 + (GAATG)n Simple_repeat Simple_repeat 2 86 0 378 193 55 6 chrY 27500343 27500444 -24013140 + AluJ/FRAM SINE Alu 225 294 -8 1149 101 0 0 chrY 27500444 27500502 -24013082 + (GAATG)n Satellite Satellite 1 237 0 1149 101 0 0 chrY 27500502 27500681 -24012903 + (GAATG)n Satellite Satellite 1 179 0 1005 134 0 0 chrY 27500695 27500867 -24012717 + (GAATG)n Satellite Satellite 5 176 0 272 238 16 0 chrY 27500878 27500941 -24012643 + AluJ/FRAM SINE Alu 225 288 -14 294 169 0 0 chrY 27500941 27501006 -24012578 + (GAGTG)n Simple_repeat Simple_repeat 2 66 0 336 213 39 12 chrY 27501006 27501114 -24012470 + AluJ/FRAM SINE Alu 225 286 -16 891 135 0 0 chrY 27501114 27501270 -24012314 + (GAATG)n Simple_repeat Simple_repeat 5 160 0 375 206 27 0 chrY 27501281 27501354 -24012230 + AluS SINE Alu 224 298 -3 222 94 0 0 chrY 27501354 27501386 -24012198 + (GAATG)n Simple_repeat Simple_repeat 1 32 0 882 167 0 0 chrY 27501386 27501566 -24012018 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 434 177 18 0 chrY 27501545 27501658 -24011926 + (GAATG)n Simple_repeat Simple_repeat 2 116 0 * 302 218 0 0 chrY 27501658 27501713 -24011871 + AluJ/FRAM SINE Alu 225 279 -23 1035 139 0 0 chrY 27501722 27501728 -24011856 + (GAGTG)n Simple_repeat Simple_repeat 1 186 0 1035 139 0 0 chrY 27501728 27501908 -24011676 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 324 200 0 0 chrY 27502055 27502110 -24011474 + AluJ/FRAM SINE Alu 225 279 -23 1056 119 0 0 chrY 27502115 27502150 -24011434 + (GAGTG)n Simple_repeat Simple_repeat 1 212 0 1056 119 0 0 chrY 27502150 27502327 -24011257 + (GAGTG)n Simple_repeat Simple_repeat 4 180 0 260 250 16 0 chrY 27502452 27502516 -24011068 + AluS SINE Alu 225 289 -13 569 154 16 0 chrY 27502516 27502639 -24010945 + (GAATG)n Simple_repeat Simple_repeat 2 126 0 407 125 31 0 chrY 27502639 27502703 -24010881 + AluJ/FRAM SINE Alu 225 290 -22 774 89 0 0 chrY 27502703 27502815 -24010769 + (GAATG)n Simple_repeat Simple_repeat 5 116 0 354 206 29 0 chrY 27502826 27502894 -24010690 + AluS SINE Alu 223 292 -8 201 132 0 0 chrY 27502897 27502935 -24010649 + (TAATG)n Simple_repeat Simple_repeat 2 39 0 924 149 0 0 chrY 27502954 27503128 -24010456 + (GAGTG)n Simple_repeat Simple_repeat 4 177 0 360 216 0 0 chrY 27503139 27503236 -24010348 + (GAGTG)n Simple_repeat Simple_repeat 1 97 0 180 135 0 0 chrY 27503237 27503274 -24010310 + (GAATG)n Simple_repeat Simple_repeat 3 39 0 306 100 0 0 chrY 27503289 27503329 -24010255 + Alu SINE Alu 224 263 -37 687 175 0 0 chrY 27503355 27503509 -24010075 + (GAATG)n Simple_repeat Simple_repeat 5 158 0 337 153 0 0 chrY 27503520 27503573 -24010011 + AluS SINE Alu 224 270 -31 731 131 7 0 chrY 27503574 27503711 -24009873 + (GAATG)n Simple_repeat Simple_repeat 5 142 0 234 242 32 0 chrY 27503722 27503784 -24009800 + AluJ/FRAM SINE Alu 225 288 -14 468 179 0 0 chrY 27503784 27503896 -24009688 + (GAATG)n Simple_repeat Simple_repeat 5 116 0 397 174 29 0 chrY 27503906 27503975 -24009609 + AluJ/FRAM SINE Alu 224 294 -8 804 168 0 0 chrY 27503975 27504148 -24009436 + (GAATG)n Simple_repeat Simple_repeat 5 177 0 336 233 27 0 chrY 27504159 27504232 -24009352 + AluS SINE Alu 223 297 -3 996 151 0 0 chrY 27504240 27504419 -24009165 + (GAGTG)n Simple_repeat Simple_repeat 1 179 0 543 184 0 0 chrY 27504432 27504568 -24009016 + (GAATG)n Simple_repeat Simple_repeat 2 137 0 363 223 29 6 chrY 27504568 27504669 -24008915 + AluJ/FRAM SINE Alu 225 292 -10 1053 141 4 6 chrY 27504669 27504972 -24008612 + (GAATG)n Satellite Satellite 1 484 -16 993 145 0 0 chrY 27504972 27505151 -24008433 + (GAGTG)n Simple_repeat Simple_repeat 1 179 0 1053 141 4 6 chrY 27505151 27505168 -24008416 + (GAATG)n Satellite Satellite 484 500 0 268 250 15 0 chrY 27505168 27505236 -24008348 + AluS SINE Alu 225 293 -9 831 183 0 0 chrY 27505263 27505443 -24008141 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 1062 135 0 3 chrY 27505463 27506016 -24007568 + (GAATG)n Satellite Satellite 1 726 0 996 114 0 0 chrY 27506016 27506192 -24007392 + (GAATG)n Satellite Satellite 4 179 0 744 149 0 0 chrY 27506470 27506644 -24006940 + (GAATG)n Satellite Satellite 2 175 0 1053 122 0 5 chrY 27506675 27507146 -24006438 + (GAATG)n Satellite Satellite 1 646 0 1011 112 0 0 chrY 27507146 27507325 -24006259 + (GAATG)n Satellite Satellite 1 179 0 716 172 0 3 chrY 27507443 27507801 -24005783 + (GAATG)n Satellite Satellite 1 356 0 747 144 0 0 chrY 27507817 27507984 -24005600 + (GAATG)n Satellite Satellite 4 170 0 906 122 0 0 chrY 27508017 27508197 -24005387 + (GAATG)n Satellite Satellite 1 180 0 1023 125 2 15 chrY 27508217 27508846 -24004738 + (GAATG)n Satellite Satellite 1 620 0 962 131 0 8 chrY 27508871 27509236 -24004348 + (GAATG)n Satellite Satellite 1 361 0 303 160 0 0 chrY 27509252 27509327 -24004257 + (GAATG)n Satellite Satellite 3 77 0 222 37 0 0 chrY 27509329 27509356 -24004228 + (TA)n Simple_repeat Simple_repeat 1 27 0 2950 92 11 0 chrY 27509370 27509836 -24003748 - L1P3 LINE L1 -503 5651 5182 * 7205 102 20 1 chrY 27509821 27510872 -24002712 + L1P3 LINE L1 4103 5173 -973 24 0 0 0 chrY 27511049 27511073 -24002511 + AT_rich Low_complexity Low_complexity 1 24 0 294 106 0 0 chrY 27511761 27511808 -24001776 + (TG)n Simple_repeat Simple_repeat 2 48 0 284 109 0 18 chrY 27512977 27513032 -24000552 + (TA)n Simple_repeat Simple_repeat 2 55 0