1020 143 0 0 chrX 1 148 -162599782 + AluSp/q SINE Alu 156 302 -11 1323 193 97 65 chrX 402 518 -162599412 + MER65C LTR ERV1 2 113 -348 2015 128 14 0 chrX 518 800 -162599130 + AluSx SINE Alu 1 286 -26 1323 193 97 65 chrX 800 1114 -162598816 + MER65C LTR ERV1 113 446 -15 2054 125 18 0 chrX 1203 1505 -162598425 - AluSg SINE Alu 0 307 1 306 50 0 0 chrX 1531 1571 -162598359 + (TG)n Simple_repeat Simple_repeat 2 41 0 2473 168 46 26 chrX 1662 2094 -162597836 - Tigger3(Golem) DNA MER2_type -10 3019 2574 2126 134 0 0 chrX 2094 2392 -162597538 - AluSx SINE Alu -14 298 1 2473 168 46 26 chrX 2392 2458 -162597472 - Tigger3(Golem) DNA MER2_type -455 2574 2511 1464 193 64 10 chrX 2458 2754 -162597176 + AluJb SINE Alu 1 312 0 1895 137 20 13 chrX 2846 3145 -162596785 - AluSx SINE Alu -11 301 1 1389 332 88 36 chrX 3743 4010 -162595920 + MER4-int LTR ERV1 5633 5885 -1237 1997 140 0 10 chrX 4010 4336 -162595594 + AluSc SINE Alu 1 309 0 1389 332 88 36 chrX 4336 5067 -162594863 + MER4-int LTR ERV1 5885 6683 -439 257 210 0 32 chrX 5281 5343 -162594587 + MER4-int LTR ERV1 4185 4244 -2354 537 287 71 35 chrX 5389 5643 -162594287 + LTR47B LTR ERVL 51 313 -130 518 126 0 0 chrX 5646 5733 -162594197 + AluSp/q SINE Alu 222 308 -5 471 258 39 7 chrX 5738 5893 -162594037 + MER39 LTR ERV1 537 696 -11 190 253 0 80 chrX 9263 9338 -162590592 - L2 LINE L2 -1 3271 3203 1237 206 11 11 chrX 10603 10870 -162589060 - L1MB5 LINE L1 -77 6097 5831 349 234 156 44 chrX 13444 13649 -162586281 + LTR37A LTR ERV1 197 424 -2 288 228 89 41 chrX 14221 14289 -162585641 - L1ME3 LINE L1 -166 5996 5933 2218 139 94 54 chrX 14289 14755 -162585175 + MER31A LTR ERV1 1 485 0 288 228 89 41 chrX 14755 14809 -162585121 - L1ME3 LINE L1 -229 5933 5868 953 206 46 27 chrX 14850 15112 -162584818 - L1MA8 LINE L1 -65 6226 5960 454 245 20 0 chrX 15112 15214 -162584716 - U6 snRNA snRNA 0 107 4 367 299 7 28 chrX 15243 15387 -162584543 - L1ME3 LINE L1 -403 5767 5627 275 263 59 51 chrX 15581 15699 -162584231 + MIR SINE MIR 20 138 -124 2456 87 3 0 chrX 15821 16131 -162583799 + AluY SINE Alu 1 311 0 22 0 0 0 chrX 16438 16460 -162583470 + AT_rich Low_complexity Low_complexity 1 22 0 372 259 121 50 chrX 16511 16687 -162583243 - L1ME2 LINE L1 -37 6127 5928 2373 78 3 0 chrX 16687 16983 -162582947 - AluY SINE Alu -14 297 1 372 259 121 50 chrX 16983 17045 -162582885 - L1ME2 LINE L1 -236 5928 5872 948 260 71 0 chrX 17053 17361 -162582569 - L1ME2 LINE L1 -370 5794 5465 564 260 50 10 chrX 17724 17924 -162582006 + MER67C LTR ERV1 34 241 -469 4469 101 23 14 chrX 17948 18180 -162581750 - PABL_A LTR ERV1 -2 658 430 2521 56 0 3 chrX 18180 18485 -162581445 - AluY SINE Alu -7 304 1 4469 101 23 14 chrX 18485 18904 -162581026 - PABL_A LTR ERV1 -230 430 1 652 111 0 10 chrX 18942 19041 -162580889 + MER4A LTR ERV1 1 98 -566 444 189 7 45 chrX 19041 19189 -162580741 + MER4A LTR ERV1 261 461 -203 2055 112 35 0 chrX 19229 19515 -162580415 - AluSg SINE Alu -14 296 1 24 32 0 0 chrX 19523 19554 -162580376 + AT_rich Low_complexity Low_complexity 1 31 0 227 30 0 30 chrX 19748 19781 -162580149 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1048 181 4 75 chrX 19929 20017 -162579913 - MER2 DNA MER2_type -135 210 117 2231 120 0 0 chrX 20017 20317 -162579613 + AluSx SINE Alu 1 300 -12 1048 181 4 75 chrX 20317 20454 -162579476 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 20554 20575 -162579355 + (TTA)n Simple_repeat Simple_repeat 2 22 0 875 156 28 0 chrX 20615 20756 -162579174 - AluSg/x SINE Alu -15 297 153 274 254 67 22 chrX 20757 20891 -162579039 - L1ME2 LINE L1 -1031 5115 4976 1994 122 42 7 chrX 20898 21186 -162578744 + AluSx SINE Alu 1 298 -14 1994 142 13 10 chrX 21390 21701 -162578229 - AluJo SINE Alu 0 312 1 1161 39 0 0 chrX 22054 22183 -162577747 - AluY SINE Alu -182 129 1 1131 164 0 11 chrX 22340 22529 -162577401 - AluJb SINE Alu -3 309 123 1577 63 5 15 chrX 23091 23297 -162576633 - AluYa5 SINE Alu -9 302 99 3993 74 18 7 chrX 23297 23849 -162576081 + LTR6B LTR ERV1 1 558 0 904 40 0 0 chrX 23850 23951 -162575979 - AluYa5 SINE Alu -210 101 1 2428 106 0 0 chrX 23967 24279 -162575651 - AluSx SINE Alu 0 312 1 3776 194 19 4 chrX 24312 25065 -162574865 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 25622 25650 -162574280 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1116 144 0 2 chrX 26109 26469 -162573461 + (TTCC)n Simple_repeat Simple_repeat 1 540 0 653 220 9 9 chrX 26474 26832 -162573098 + CT-rich Low_complexity Low_complexity 1 358 0 252 188 25 12 chrX 26856 26936 -162572994 + CT-rich Low_complexity Low_complexity 4 84 0 2628 206 31 4 chrX 27258 27803 -162572127 - L1MB5 LINE L1 0 6174 5615 1620 190 3 31 chrX 28837 29158 -162570772 + AluJo SINE Alu 1 312 0 1370 188 22 4 chrX 29588 29860 -162570070 - L1MB5 LINE L1 -89 6085 5809 463 247 159 12 chrX 30006 30176 -162569754 + MLT1J2 LTR MaLR 256 450 0 2253 124 0 0 chrX 31199 31505 -162568425 - AluSx SINE Alu -6 306 1 3191 142 18 63 chrX 32873 33126 -162566804 + MER39B LTR ERV1 2 265 -388 2582 53 0 3 chrX 33126 33428 -162566502 + AluY SINE Alu 1 301 -10 3191 142 18 63 chrX 33428 33546 -162566384 + MER39B LTR ERV1 265 387 -266 2410 80 0 0 chrX 33546 33834 -162566096 + AluSc SINE Alu 1 288 -21 3191 142 18 63 chrX 33834 34115 -162565815 + MER39B LTR ERV1 387 626 -27 324 70 0 0 chrX 34568 34611 -162565319 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1892 150 0 17 chrX 34611 34911 -162565019 - AluSg SINE Alu -15 295 1 2071 143 0 0 chrX 34911 35219 -162564711 - AluSx SINE Alu -4 308 1 3580 136 11 0 chrX 35537 36080 -162563850 - MER41A LTR ERV1 0 554 6 3351 164 46 89 chrX 36085 36665 -162563265 - LTR39 LTR ERV1 -8 775 238 1939 135 10 10 chrX 36665 36953 -162562977 + AluSx SINE Alu 1 288 -24 3351 164 46 89 chrX 36953 37182 -162562748 - LTR39 LTR ERV1 -545 238 1 285 278 21 10 chrX 37936 38033 -162561897 - MER5A DNA MER1_type -86 103 6 1276 178 9 0 chrX 38042 38272 -162561658 - MLT1B LTR MaLR -1 389 158 1131 175 5 24 chrX 38272 38509 -162561421 - MLT1B LTR MaLR 0 467 159 2175 167 8 13 chrX 38510 38899 -162561031 - MLT1B LTR MaLR 0 390 4 1956 195 4 30 chrX 38928 39222 -162560708 - MLT1B LTR MaLR 0 396 111 2283 70 33 33 chrX 39222 39524 -162560406 - AluY SINE Alu -9 302 1 1956 195 4 30 chrX 39524 39633 -162560297 - MLT1B LTR MaLR -285 111 1 1005 97 0 156 chrX 39786 39972 -162559958 - AluSg/x SINE Alu -18 292 136 773 254 46 0 chrX 40670 40867 -162559063 - MER20 DNA MER1_type 0 219 14 641 141 19 6 chrX 40883 41039 -162558891 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 298 192 39 39 chrX 41050 41154 -162558776 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 671 112 9 19 chrX 91155 91262 -162508668 + MLT1A1 LTR MaLR 260 365 0 1400 147 4 0 chrX 91262 91493 -162508437 + MLT1B LTR MaLR 158 389 -1 551 211 265 0 chrX 91494 91679 -162508251 + L1MB4 LINE L1 5906 6139 -41 1872 146 0 23 chrX 91684 91985 -162507945 - AluJo SINE Alu -15 297 4 3752 130 0 8 chrX 92588 93117 -162506813 + MER1A DNA MER1_type 3 527 0 1909 174 3 0 chrX 93274 93562 -162506368 + AluJb SINE Alu 2 290 -22 2210 121 3 0 chrX 93599 93896 -162506034 + AluSq SINE Alu 1 298 -15 905 115 0 8 chrX 93896 94026 -162505904 + AluSg/x SINE Alu 160 288 -24 258 32 0 0 chrX 94062 94093 -162505837 + (TG)n Simple_repeat Simple_repeat 1 31 0 903 136 34 20 chrX 94094 94241 -162505689 - AluSq/x SINE Alu -163 149 1 204 40 0 0 chrX 94340 94365 -162505565 + (T)n Simple_repeat Simple_repeat 1 25 0 2531 63 0 0 chrX 94390 94689 -162505241 - AluY SINE Alu -12 299 1 189 0 0 0 chrX 94720 94741 -162505189 + (A)n Simple_repeat Simple_repeat 1 21 0 2171 105 3 7 chrX 95192 95509 -162504421 - AluSx SINE Alu 0 316 1 783 126 0 77 chrX 95748 95891 -162504039 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 95897 95932 -162503998 + AT_rich Low_complexity Low_complexity 1 35 0 1505 128 8 16 chrX 95948 96198 -162503732 - L1MC1 LINE L1 0 6333 6086 235 281 45 0 chrX 96226 96315 -162503615 + L1MEc LINE L1 1262 1354 -5042 2142 144 0 0 chrX 96675 96981 -162502949 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 97053 97075 -162502855 + AT_rich Low_complexity Low_complexity 1 22 0 2358 112 49 0 chrX 97300 97352 -162502578 - THE1B LTR MaLR 0 364 316 2366 70 0 7 chrX 97352 97639 -162502291 - AluY SINE Alu -11 300 16 2358 112 49 0 chrX 97639 97933 -162501997 - THE1B LTR MaLR -48 316 1 402 336 24 24 chrX 98140 98390 -162501540 + L1MEc LINE L1 2302 2551 -3664 885 150 0 0 chrX 98397 98530 -162501400 + FLAM_C SINE Alu 1 133 0 2042 133 20 3 chrX 98889 99190 -162500740 - AluSx SINE Alu -6 306 1 369 0 0 0 chrX 99938 99979 -162499951 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 42 0 0 chrX 100461 100485 -162499445 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3532 65 5 0 chrX 100537 100982 -162498948 + L1PA10 LINE L1 5718 6164 -4 2003 134 35 15 chrX 101147 101490 -162498440 + L1PB4 LINE L1 5804 6153 -3 188 61 61 0 chrX 101734 101767 -162498163 + T-rich Low_complexity Low_complexity 2 36 0 1827 169 0 19 chrX 102024 102442 -162497488 + AluJb SINE Alu 1 412 0 367 73 36 0 chrX 102495 102550 -162497380 - Alu SINE Alu -5 297 241 319 193 23 11 chrX 102556 102644 -162497286 + CT-rich Low_complexity Low_complexity 4 92 0 1771 181 0 7 chrX 102647 102951 -162496979 - AluJb SINE Alu -10 302 1 2209 173 18 3 chrX 103012 103394 -162496536 + MLT1B LTR MaLR 3 390 0 1346 167 116 29 chrX 103475 103709 -162496221 - AluJo SINE Alu -13 299 36 5044 94 0 0 chrX 103709 104369 -162495561 + PABL_A LTR ERV1 1 660 0 1346 167 116 29 chrX 104369 104409 -162495521 - AluJo SINE Alu -276 36 1 247 264 16 48 chrX 104709 104834 -162495096 + L1ME LINE L1 5691 5811 -359 785 153 0 0 chrX 105242 105360 -162494570 + FLAM_C SINE Alu 1 118 -15 1156 203 14 22 chrX 105383 105605 -162494325 + AluJo SINE Alu 1 220 -92 290 118 0 39 chrX 105605 105656 -162494274 + AluSq/x SINE Alu 86 134 -169 32 26 0 0 chrX 105656 105695 -162494235 + AT_rich Low_complexity Low_complexity 1 39 0 978 137 27 0 chrX 105705 105888 -162494042 + L1MA4 LINE L1 6107 6294 -6 2113 117 0 0 chrX 105906 106188 -162493742 - AluSx SINE Alu -30 282 1 23 0 0 0 chrX 106195 106218 -162493712 + AT_rich Low_complexity Low_complexity 1 23 0 558 229 12 59 chrX 107121 107291 -162492639 - MER20 DNA MER1_type -42 177 16 1702 174 35 0 chrX 107363 107485 -162492445 + AluJo SINE Alu 1 117 -195 186 43 0 0 chrX 107485 107508 -162492422 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1702 174 35 0 chrX 107508 107672 -162492258 + AluJo SINE Alu 117 297 -15 28 29 0 0 chrX 107838 107873 -162492057 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 108219 108247 -162491683 + AT_rich Low_complexity Low_complexity 1 28 0 349 246 118 43 chrX 108631 108818 -162491112 + L1ME1 LINE L1 5736 5936 -230 2486 85 0 3 chrX 109572 109879 -162490051 - AluSg SINE Alu -4 306 1 2361 95 3 0 chrX 110111 110416 -162489514 - AluSp SINE Alu -7 306 1 616 155 35 113 chrX 110649 110791 -162489139 + FLAM_C SINE Alu 2 132 -11 5024 109 7 0 chrX 110815 111530 -162488400 + L1PA11 LINE L1 5445 6164 -10 2057 135 0 22 chrX 111533 111819 -162488111 + AluSx SINE Alu 1 281 -31 189 0 0 0 chrX 111819 111840 -162488090 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2057 135 0 22 chrX 111840 111872 -162488058 + AluSx SINE Alu 281 312 0 2727 28 9 0 chrX 111939 112258 -162487672 + L1PA4 LINE L1 5831 6152 -3 24 53 0 0 chrX 112258 112296 -162487634 + AT_rich Low_complexity Low_complexity 1 38 0 1958 141 3 13 chrX 112731 113030 -162486900 + AluSq SINE Alu 18 313 0 257 75 25 0 chrX 113063 113103 -162486827 + (GAA)n Simple_repeat Simple_repeat 2 42 0 262 228 0 0 chrX 113120 113177 -162486753 - MIR SINE MIR -146 116 60 1351 190 52 14 chrX 113282 113415 -162486515 + AluJo SINE Alu 3 129 -183 2160 110 14 0 chrX 113415 113705 -162486225 + AluSx SINE Alu 1 294 -18 1351 190 52 14 chrX 113705 113860 -162486070 + AluJo SINE Alu 129 302 -10 445 172 16 0 chrX 113944 114066 -162485864 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 256 100 0 40 chrX 114070 114120 -162485810 + MLT2B1 LTR ERVL 458 505 -15 581 208 32 19 chrX 114153 114307 -162485623 + L1M4 LINE L1 5071 5226 -920 550 195 140 30 chrX 114870 115034 -162484896 + MLT1C LTR MaLR 1 182 -285 546 242 73 28 chrX 115080 115258 -162484672 + MLT1C LTR MaLR 172 357 -110 1846 150 10 30 chrX 115279 115579 -162484351 + AluJb SINE Alu 1 294 -18 768 170 0 7 chrX 115678 115813 -162484117 + FRAM SINE Alu 42 175 -1 310 339 0 17 chrX 115926 116041 -162483889 - MER5A DNA MER1_type 0 189 77 813 181 0 8 chrX 116093 116226 -162483704 - FLAM_C SINE Alu -1 132 1 272 253 0 44 chrX 116344 116435 -162483495 - L1MC4 LINE L1 -13 8029 7943 2197 138 43 0 chrX 116507 116856 -162483074 - THE1B LTR MaLR 0 364 1 10878 107 36 1 chrX 116856 118382 -162481548 - THE1B-int LTR MaLR 0 1580 1 2352 133 23 0 chrX 118382 118736 -162481194 - THE1B LTR MaLR 0 364 3 882 153 0 14 chrX 118810 118954 -162480976 + FLAM_C SINE Alu 1 142 -1 493 227 169 7 chrX 118962 119116 -162480814 - L1MC4 LINE L1 -285 7757 7579 286 164 30 0 chrX 119125 119192 -162480738 - L1MB4 LINE L1 0 6180 6112 336 200 0 0 chrX 119268 119328 -162480602 - L1MB4 LINE L1 -55 6125 6066 1233 141 0 0 chrX 119337 119514 -162480416 + AluSg/x SINE Alu 134 310 0 1153 253 88 40 chrX 119567 120089 -162479841 + L1ME1 LINE L1 4767 5313 -833 1941 141 0 3 chrX 120090 120416 -162479514 - AluSx SINE Alu 0 325 1 2108 134 0 10 chrX 120424 120729 -162479201 + AluSx SINE Alu 1 302 -10 1788 239 34 60 chrX 120729 121079 -162478851 + L1ME1 LINE L1 5595 5953 -381 1976 107 61 151 chrX 121079 121293 -162478637 - Tigger2a DNA MER2_type -2274 434 285 2005 154 13 0 chrX 121293 121599 -162478331 + AluJo SINE Alu 1 310 -2 1976 107 61 151 chrX 121599 121861 -162478069 - Tigger2a DNA MER2_type -2423 285 1 1788 239 34 60 chrX 121861 122112 -162477818 + L1ME1 LINE L1 5953 6334 0 572 184 14 40 chrX 122231 122588 -162477342 + (TATATG)n Simple_repeat Simple_repeat 1 347 0 477 216 3 55 chrX 122612 122884 -162477046 + (TATATG)n Simple_repeat Simple_repeat 1 375 -39 722 198 0 0 chrX 122884 123010 -162476920 + FLAM_C SINE Alu 1 126 -7 477 216 3 55 chrX 123010 123049 -162476881 + (TATATG)n Simple_repeat Simple_repeat 375 414 0 234 121 35 35 chrX 123053 123111 -162476819 + L1MCa LINE L1 2006 2063 -4363 520 208 4 28 chrX 123111 123357 -162476573 + (TATATG)n Simple_repeat Simple_repeat 1 240 0 220 295 16 0 chrX 123360 123421 -162476509 + (TATG)n Simple_repeat Simple_repeat 1 62 0 496 240 6 6 chrX 123422 123597 -162476333 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 1765 161 11 0 chrX 123912 124198 -162475732 - AluJo SINE Alu 0 312 24 1015 262 62 54 chrX 124567 125063 -162474867 + LTR1B LTR ERV1 25 524 -302 602 188 14 76 chrX 125168 125312 -162474618 + HUERS-P2 LTR ERV1 2 136 -2952 * 2836 207 37 40 chrX 125283 125882 -162474048 + HUERS-P2 LTR ERV1 616 1212 -1876 1718 196 10 3 chrX 125876 126177 -162473753 + HUERS-P2 LTR ERV1 1079 1381 -1707 * 2445 188 53 9 chrX 126176 126725 -162473205 + HUERS-P2 LTR ERV1 2467 3074 -14 973 229 113 91 chrX 126726 127290 -162472640 + LTR1B LTR ERV1 10 589 -237 977 191 0 0 chrX 127387 127544 -162472386 - AluJb SINE Alu -20 292 136 893 179 14 82 chrX 127544 127863 -162472067 - L1MA4 LINE L1 -27 6273 6011 23 0 0 0 chrX 128016 128039 -162471891 + AT_rich Low_complexity Low_complexity 1 23 0 743 149 9 0 chrX 128039 128153 -162471777 - FLAM_C SINE Alu -24 119 5 407 207 73 29 chrX 128606 128689 -162471241 + LTR8 LTR ERV1 1 74 -467 219 36 0 0 chrX 128689 128717 -162471213 + (TTG)n Simple_repeat Simple_repeat 3 30 0 407 207 73 29 chrX 128717 128793 -162471137 + LTR8 LTR ERV1 74 145 -396 1687 189 7 0 chrX 128909 129210 -162470720 + AluJo SINE Alu 5 307 -5 872 194 20 30 chrX 129443 129644 -162470286 + MER20 DNA MER1_type 1 199 -20 746 128 0 115 chrX 131288 131496 -162468434 - FLAM_C SINE Alu 0 191 1 264 234 26 13 chrX 131847 131924 -162468006 + (TA)n Simple_repeat Simple_repeat 2 79 0 358 259 29 3 chrX 131957 132313 -162467617 + (TA)n Simple_repeat Simple_repeat 1 365 0 267 189 54 34 chrX 132273 132321 -162467609 + (TTATA)n Simple_repeat Simple_repeat 1 47 -104 * 872 150 0 0 chrX 132321 132454 -162467476 - FLAM_C SINE Alu 0 133 1 267 189 54 34 chrX 132454 132553 -162467377 + (TTATA)n Simple_repeat Simple_repeat 47 151 0 262 219 14 41 chrX 132884 132957 -162466973 - MER116 DNA Mariner -2 78 8 2319 99 0 0 chrX 133036 133329 -162466601 - AluSx SINE Alu -19 293 1 180 158 0 0 chrX 133374 133412 -162466518 + T-rich Low_complexity Low_complexity 1 38 0 2008 143 0 0 chrX 133413 133729 -162466201 - AluSx SINE Alu 0 316 1 1597 179 66 0 chrX 133852 134125 -162465805 - AluJo SINE Alu -21 291 1 770 157 8 8 chrX 134125 134259 -162465671 - AluJo SINE Alu -176 136 3 821 136 0 0 chrX 134340 134458 -162465472 + AluJb SINE Alu 10 127 -185 2118 124 6 16 chrX 135104 135419 -162464511 + AluJo SINE Alu 1 312 0 254 93 23 0 chrX 135699 135742 -162464188 + MADE1 DNA Mariner 1 44 -36 621 146 9 125 chrX 135924 136136 -162463794 - MER4A LTR ERV1 -158 506 261 508 165 21 10 chrX 136136 136233 -162463697 - MER4A LTR ERV1 -566 98 1 2213 105 3 7 chrX 136635 136940 -162462990 - MER4E LTR ERV1 0 766 463 1047 57 0 29 chrX 136943 137083 -162462847 + AluSg/x SINE Alu 175 310 0 2960 127 31 27 chrX 137085 137574 -162462356 - MER4E LTR ERV1 -288 491 1 500 129 0 12 chrX 137925 138010 -162461920 - AluJ/FLAM SINE Alu -227 85 2 2905 13 0 0 chrX 138605 138960 -162460970 - AluY SINE Alu 0 355 1 740 191 0 22 chrX 139038 139174 -162460756 - FLAM_C SINE Alu 0 133 1 1617 162 41 0 chrX 139968 140239 -162459691 - AluJb SINE Alu -26 286 5 1830 185 0 6 chrX 140896 141210 -162458720 - AluJb SINE Alu 0 312 1 2245 123 0 0 chrX 141213 141521 -162458409 - AluSx SINE Alu -4 308 1 1400 140 31 109 chrX 141597 141715 -162458215 + AluJo SINE Alu 18 144 -168 2447 75 0 0 chrX 141715 142007 -162457923 - AluY SINE Alu -18 293 2 1400 140 31 109 chrX 142007 142181 -162457749 + AluJo SINE Alu 144 287 -25 2275 91 0 10 chrX 142184 142491 -162457439 + AluSx SINE Alu 1 304 -8 1823 150 0 36 chrX 142899 143205 -162456725 - AluJo SINE Alu -17 295 1 702 136 0 64 chrX 143609 143749 -162456181 - FLAM_C SINE Alu 0 133 3 2586 181 13 63 chrX 143754 144305 -162455625 + MER74A LTR ERVL 23 545 -13 2240 106 0 0 chrX 144352 144635 -162455295 + AluSx SINE Alu 1 307 0 184 42 0 0 chrX 144635 144659 -162455271 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 650 240 6 11 chrX 144706 144881 -162455049 + MER5B DNA MER1_type 1 174 -4 1840 167 0 20 chrX 144929 145228 -162454702 + AluJo SINE Alu 4 296 -16 998 210 0 0 chrX 145228 145404 -162454526 + AluJb SINE Alu 134 309 -3 900 137 0 8 chrX 145994 146125 -162453805 + FLAM_C SINE Alu 4 133 -10 24 0 0 0 chrX 146125 146149 -162453781 + AT_rich Low_complexity Low_complexity 1 24 0 841 164 7 7 chrX 146326 146478 -162453452 + MLT1A1 LTR MaLR 1 152 -213 949 111 0 15 chrX 146481 146616 -162453314 + FLAM_C SINE Alu 1 133 0 29 94 0 0 chrX 146988 147073 -162452857 + AT_rich Low_complexity Low_complexity 1 85 0 1683 161 0 81 chrX 147132 147454 -162452476 - AluJb SINE Alu -16 296 1 837 230 148 19 chrX 147779 148097 -162451833 + MLT1D LTR MaLR 1 359 -146 969 160 10 35 chrX 148100 148162 -162451768 - MLT1B LTR MaLR -195 195 133 2553 104 28 6 chrX 148162 148518 -162451412 - THE1B LTR MaLR 0 364 1 969 160 10 35 chrX 148518 148655 -162451275 - MLT1B LTR MaLR -257 133 1 * 988 266 76 6 chrX 148655 149008 -162450922 + MLT1C LTR MaLR 88 465 -2 2025 130 0 27 chrX 149717 150018 -162449912 + AluSx SINE Alu 1 293 -19 1513 181 46 11 chrX 150157 150438 -162449492 + AluJo SINE Alu 1 291 -21 2105 144 7 0 chrX 150808 151107 -162448823 - AluSx SINE Alu -11 301 1 930 119 0 22 chrX 151198 151332 -162448598 - FLAM_C SINE Alu -2 131 1 1720 183 0 3 chrX 151739 152046 -162447884 - AluJo SINE Alu 0 306 1 1106 141 0 0 chrX 152108 152271 -162447659 + AluSg/x SINE Alu 129 291 -19 1905 133 0 73 chrX 152295 152625 -162447305 + AluJb SINE Alu 6 311 -1 241 167 42 0 chrX 153256 153304 -162446626 + MLT1D LTR MaLR 1 50 -455 327 83 42 0 chrX 153305 153353 -162446577 + MLT1D LTR MaLR 1 50 -455 303 125 42 0 chrX 153354 153402 -162446528 + MLT1D LTR MaLR 1 50 -455 335 303 80 42 chrX 153510 153774 -162446156 + L2 LINE L2 2703 2976 -338 579 159 0 37 chrX 153885 154048 -162445882 + CT-rich Low_complexity Low_complexity 3 159 0 222 314 35 23 chrX 154102 154188 -162445742 + L2 LINE L2 3137 3223 -49 2511 81 0 0 chrX 154464 154774 -162445156 - AluSg SINE Alu 0 310 1 1674 174 14 0 chrX 154774 155050 -162444880 - AluJo SINE Alu -32 280 1 2368 115 0 0 chrX 155176 155488 -162444442 - AluSx SINE Alu 0 312 1 3967 105 86 21 chrX 156047 156356 -162443574 - PABL_A LTR ERV1 0 660 372 2284 107 0 0 chrX 156356 156682 -162443248 + AluSx SINE Alu 1 326 0 3967 105 86 21 chrX 156682 156990 -162442940 - PABL_A LTR ERV1 -288 372 2 270 189 0 0 chrX 156996 157049 -162442881 - L1MB7 LINE L1 -61 6123 6071 2773 121 23 35 chrX 157049 157393 -162442537 - MER4E LTR ERV1 0 766 419 2523 94 0 0 chrX 157393 157700 -162442230 + AluSx SINE Alu 1 307 -5 2773 121 23 35 chrX 157700 157961 -162441969 - MER4E LTR ERV1 -347 419 1 1791 157 10 13 chrX 157984 158289 -162441641 - AluJb SINE Alu 0 312 9 343 143 39 0 chrX 158297 158374 -162441556 - L1MB7 LINE L1 -109 6075 5996 921 143 0 29 chrX 158422 158562 -162441368 - AluJo SINE Alu -176 136 1 598 212 97 0 chrX 158569 158734 -162441196 - L1MB7 LINE L1 -218 5966 5786 2420 99 10 0 chrX 158780 159083 -162440847 + AluSx SINE Alu 1 306 -6 392 265 5 134 chrX 159129 159518 -162440412 - HsTC2 DNA Tc2 -21 1877 1539 * 956 294 73 12 chrX 159515 159923 -162440007 - MLT1C LTR MaLR -30 437 5 813 233 149 19 chrX 159938 160247 -162439683 - MLT1D LTR MaLR -145 360 12 329 217 13 16 chrX 160269 160408 -162439522 - MLT1C LTR MaLR -145 360 192 180 163 0 0 chrX 160548 160591 -162439339 + GA-rich Low_complexity Low_complexity 2 44 0 4099 77 16 12 chrX 160956 161529 -162438401 - PABL_B LTR ERV1 0 667 93 2439 94 0 0 chrX 161529 161836 -162438094 - AluSx SINE Alu -5 307 1 253 286 0 0 chrX 162529 162585 -162437345 + (CA)n Simple_repeat Simple_repeat 1 56 0 1820 104 101 17 chrX 162609 162896 -162437034 - AluSx SINE Alu -1 311 1 720 153 65 32 chrX 162901 163025 -162436905 - FLAM_C SINE Alu -14 129 2 1073 82 109 0 chrX 163118 163265 -162436665 + AluSg/x SINE Alu 147 309 -1 1564 239 28 0 chrX 163289 163682 -162436248 - L1MB5 LINE L1 -49 6125 5722 1545 161 24 31 chrX 164195 164486 -162435444 + AluJb SINE Alu 24 312 0 1970 129 6 55 chrX 164590 164916 -162435014 + AluSx SINE Alu 1 310 -2 959 226 26 44 chrX 165359 165559 -162434371 - MLT1B LTR MaLR -15 375 180 2270 113 7 3 chrX 165559 165869 -162434061 - AluSx SINE Alu -1 311 1 959 226 26 44 chrX 165869 165938 -162433992 - MLT1B LTR MaLR -210 180 111 1325 188 82 41 chrX 166246 166538 -162433392 + AluJo SINE Alu 1 304 -8 263 200 0 43 chrX 166539 166609 -162433321 + GA-rich Low_complexity Low_complexity 1 67 0 1739 164 13 20 chrX 167210 167508 -162432422 - AluJo SINE Alu -13 299 4 928 190 15 41 chrX 168002 168197 -162431733 + AluJo SINE Alu 1 190 -122 1338 82 0 22 chrX 168742 168947 -162430983 + AluSg/x SINE Alu 118 310 0 2393 99 0 3 chrX 169122 169435 -162430495 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 169679 169714 -162430216 + GC_rich Low_complexity Low_complexity 1 35 0 244 252 0 66 chrX 169914 170050 -162429880 + GA-rich Low_complexity Low_complexity 3 211 0 233 211 18 0 chrX 170143 170200 -162429730 + (CCCCG)n Simple_repeat Simple_repeat 2 59 0 2887 141 90 52 chrX 170849 171356 -162428574 - MER51A LTR ERV1 -9 625 90 1729 115 20 112 chrX 171356 171705 -162428225 + AluYb8 SINE Alu 2 318 0 2887 141 90 52 chrX 171705 171799 -162428131 - MER51A LTR ERV1 -544 90 1 422 202 53 0 chrX 172068 172162 -162427768 + AluSg/x SINE Alu 208 306 -3 632 200 40 23 chrX 172162 172365 -162427565 - LTR54B LTR ERV1 -181 329 52 5014 91 3 3 chrX 172365 173025 -162426905 + PABL_A LTR ERV1 1 660 0 632 200 40 23 chrX 173025 173066 -162426864 - LTR54B LTR ERV1 -458 52 13 923 237 88 9 chrX 173513 173830 -162426100 - MLT1C LTR MaLR -32 435 94 912 187 44 6 chrX 173838 174020 -162425910 + MLT1B LTR MaLR 1 189 -201 634 265 95 30 chrX 174002 174347 -162425583 - MLT1C LTR MaLR -98 369 1 * 1955 140 0 3 chrX 174614 174900 -162425030 + AluJb SINE Alu 1 285 -27 597 230 13 13 chrX 174967 175119 -162424811 - L1MB8 LINE L1 -22 6156 6005 1857 158 10 49 chrX 175129 175456 -162424474 + MLT1B LTR MaLR 12 323 -67 2081 130 37 0 chrX 175456 175756 -162424174 - AluJb SINE Alu -1 311 1 1857 158 10 49 chrX 175756 175815 -162424115 + MLT1B LTR MaLR 323 383 -7 592 223 1 7 chrX 175820 175959 -162423971 - L1MB7 LINE L1 -192 5992 5876 2352 97 0 25 chrX 176038 176395 -162423535 - AluSx SINE Alu 0 349 1 1083 211 78 14 chrX 176402 176686 -162423244 + LTR52 LTR ERVL 23 324 -97 180 0 0 0 chrX 176691 176711 -162423219 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 216 0 0 0 chrX 176710 176734 -162423196 + (GA)n Simple_repeat Simple_repeat 1 24 0 290 177 16 16 chrX 177245 177307 -162422623 - MER4D LTR ERV1 -8 895 834 332 97 58 19 chrX 177365 177468 -162422462 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 358 132 54 38 chrX 177513 177774 -162422156 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 563 219 17 62 chrX 177800 177978 -162421952 - MER20 DNA MER1_type -2 217 48 264 77 0 0 chrX 178008 178047 -162421883 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 200 140 70 0 chrX 178056 178113 -162421817 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1334 95 0 0 chrX 178413 178581 -162421349 + AluSg/x SINE Alu 137 304 -8 2290 230 48 11 chrX 178906 179445 -162420485 - MER68 LTR ERV1 -2 560 2 2015 137 0 10 chrX 179802 180095 -162419835 - AluSx SINE Alu -1 311 22 2388 53 40 7 chrX 180178 180479 -162419451 - AluY SINE Alu 0 311 1 1679 192 10 0 chrX 181177 181474 -162418456 + AluJo SINE Alu 1 300 -12 1882 157 124 122 chrX 181683 181696 -162418234 - L1MA4A LINE L1 -6 6297 6286 1218 186 103 73 chrX 181696 181997 -162417933 - AluJo SINE Alu -2 310 1 1882 157 124 122 chrX 181997 182442 -162417488 - L1MA4A LINE L1 -17 6286 5843 1765 158 3 27 chrX 182442 182740 -162417190 - AluSx SINE Alu -21 291 1 1882 157 124 122 chrX 182740 182792 -162417138 - L1MA4A LINE L1 -460 5843 5793 2195 128 0 0 chrX 182792 183098 -162416832 - AluJb SINE Alu -6 306 1 1882 157 124 122 chrX 183098 183216 -162416714 - L1MA4A LINE L1 -510 5793 5666 2278 108 0 0 chrX 183501 183796 -162416134 + AluSx SINE Alu 9 303 -9 1608 176 8 0 chrX 183800 184055 -162415875 + AluJb SINE Alu 26 282 -30 1835 148 13 44 chrX 184412 184730 -162415200 + AluJo SINE Alu 5 312 0 2340 133 75 8 chrX 184812 185211 -162414719 - MSTA LTR MaLR 0 428 3 3313 114 110 9 chrX 185444 185998 -162413932 + MER4B LTR ERV1 1 610 0 2413 141 31 9 chrX 186356 186781 -162413149 - MER4E LTR ERV1 -1 778 345 832 105 3 238 chrX 186774 186795 -162413135 - MER4D LTR ERV1 -653 219 195 * 2114 130 3 13 chrX 186795 187094 -162412836 - AluJb SINE Alu -16 296 1 832 105 3 238 chrX 187094 187251 -162412679 - MER4D LTR ERV1 -677 195 3 2562 75 0 0 chrX 187251 187559 -162412371 - AluY SINE Alu -3 308 1 2048 128 7 3 chrX 187569 187858 -162412072 - AluSx SINE Alu -22 290 1 832 105 3 238 chrX 187858 187953 -162411977 - MER4D LTR ERV1 -755 117 1 279 290 45 52 chrX 188377 188532 -162411398 - L2 LINE L2 -1 3312 3159 72 89 0 0 chrX 188532 188723 -162411207 + AT_rich Low_complexity Low_complexity 1 191 0 1268 102 0 0 chrX 189175 189187 -162410743 - AluSg/x SINE Alu -2 308 297 417 81 0 0 chrX 189187 189249 -162410681 - L1PB1 LINE L1 0 6151 6090 1268 102 0 0 chrX 189249 189402 -162410528 - AluSg/x SINE Alu -12 298 143 2066 146 10 0 chrX 189461 189763 -162410167 + AluSx SINE Alu 1 305 -7 207 0 0 0 chrX 189844 189867 -162410063 + (TG)n Simple_repeat Simple_repeat 1 23 0 396 228 39 63 chrX 189875 190002 -162409928 - MLT1G1 LTR MaLR -8 587 464 471 118 0 0 chrX 190276 190352 -162409578 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 180 0 0 0 chrX 190412 190432 -162409498 + (GA)n Simple_repeat Simple_repeat 1 20 0 544 82 47 31 chrX 190448 190716 -162409214 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 601 141 28 34 chrX 190740 190917 -162409013 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 2046 102 0 25 chrX 191804 192116 -162407814 - AluSx SINE Alu 0 309 5 1911 167 3 16 chrX 192506 192811 -162407119 + AluJb SINE Alu 1 301 -11 364 288 68 27 chrX 192891 193037 -162406893 - MLT1J LTR MaLR -153 358 207 21 36 0 0 chrX 194016 194044 -162405886 + AT_rich Low_complexity Low_complexity 1 28 0 391 252 78 9 chrX 194264 194379 -162405551 - MLT1J LTR MaLR -153 358 236 360 183 49 24 chrX 194572 194654 -162405276 + MLT1H LTR MaLR 52 135 -420 536 219 214 26 chrX 195198 195390 -162404540 - MLT1J LTR MaLR -46 465 238 481 275 24 24 chrX 195583 195750 -162404180 + MLT1H LTR MaLR 94 260 -289 303 174 35 0 chrX 195783 195869 -162404061 + GA-rich Low_complexity Low_complexity 1 89 0 2189 153 70 48 chrX 195898 196357 -162403573 - MLT1D LTR MaLR 0 505 37 451 66 16 0 chrX 196351 196412 -162403518 - THE1C LTR MaLR -313 62 1 * 590 195 0 159 chrX 196614 196683 -162403247 + MLT1D LTR MaLR 8 86 -419 1783 218 49 13 chrX 196683 197133 -162402797 - MLT1C LTR MaLR 0 467 2 590 195 0 159 chrX 197133 197155 -162402775 + MLT1D LTR MaLR 86 110 -395 1457 103 45 232 chrX 197155 197603 -162402327 - THE1B LTR MaLR 0 364 1 590 195 0 159 chrX 197603 197705 -162402225 + MLT1D LTR MaLR 110 171 -334 1634 175 3 13 chrX 197740 198054 -162401876 - AluJo SINE Alu -1 311 1 823 173 8 0 chrX 198054 198187 -162401743 - AluJo SINE Alu -177 135 2 913 158 0 49 chrX 198206 198389 -162401541 - L1MA4 LINE L1 -7 6293 6119 2138 114 16 0 chrX 198389 198695 -162401235 + AluSx SINE Alu 1 311 -1 913 158 0 49 chrX 198695 198714 -162401216 - L1MA4 LINE L1 -181 6119 6101 2033 115 20 3 chrX 198728 199033 -162400897 + AluSx SINE Alu 1 310 -2 189 0 0 0 chrX 199157 199178 -162400752 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chrX 199320 199347 -162400583 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chrX 199514 199538 -162400392 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1484 157 8 0 chrX 199540 199795 -162400135 - AluJo SINE Alu -30 282 26 891 232 46 46 chrX 199951 200231 -162399699 + PABL_A LTR ERV1 381 660 0 1572 201 84 43 chrX 200306 200748 -162399182 - MER31A LTR ERV1 -25 460 1 1730 158 44 0 chrX 201453 201750 -162398180 + AluJb SINE Alu 1 310 -2 481 239 82 0 chrX 201821 201955 -162397975 + L1M4 LINE L1 4971 5115 -1031 219 36 0 0 chrX 201960 201988 -162397942 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1953 90 25 7 chrX 202011 202312 -162397618 + AluSc SINE Alu 1 306 0 2189 104 0 13 chrX 202313 202621 -162397309 - AluSq SINE Alu -9 304 1 324 206 100 123 chrX 202621 202791 -162397139 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 202799 202914 -162397016 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 202964 203260 -162396670 - AluSx SINE Alu -14 298 12 1873 161 3 0 chrX 203283 203594 -162396336 - AluJb SINE Alu 0 312 1 285 317 0 0 chrX 203796 203878 -162396052 - MIR SINE MIR -11 251 170 365 219 47 60 chrX 204362 204526 -162395404 + MER34 LTR ERV1 5 191 -351 2630 108 0 5 chrX 204550 204922 -162395008 - L1PB1 LINE L1 0 6151 5782 265 263 0 0 chrX 204923 205003 -162394927 + L1MC4 LINE L1 6624 6703 -1339 * 299 89 0 0 chrX 204992 205037 -162394893 + L1P5 LINE L1 5782 5826 -325 324 356 0 0 chrX 205040 205130 -162394800 - L1MC4 LINE L1 -1339 6703 6614 1312 102 2 33 chrX 205145 205357 -162394573 - L1P5 LINE L1 -360 5791 5586 1291 196 38 38 chrX 205379 205493 -162394437 + MER57B LTR ERV1 1 114 -320 1725 140 238 14 chrX 205493 205842 -162394088 - MSTA LTR MaLR -1 427 1 1291 196 38 38 chrX 205842 206018 -162393912 + MER57B LTR ERV1 113 291 -143 379 165 89 0 chrX 206025 206104 -162393826 + LTR26B LTR ERV1 446 531 0 662 218 28 0 chrX 206126 206268 -162393662 + MLT1A1 LTR MaLR 220 365 0 1872 111 17 34 chrX 206390 206732 -162393198 - AluSx SINE Alu 0 337 1 651 175 56 81 chrX 206732 206892 -162393038 - MLT1A1 LTR MaLR -209 156 1 4234 115 6 9 chrX 207302 207891 -162392039 + MER41B LTR ERV1 1 589 -46 4133 58 24 7 chrX 207891 208440 -162391490 + LTR6B LTR ERV1 1 558 0 4234 115 6 9 chrX 208440 208487 -162391443 + MER41B LTR ERV1 589 635 0 533 85 24 12 chrX 208804 208886 -162391044 - MER4E LTR ERV1 0 779 697 3493 126 35 6 chrX 208886 209424 -162390506 + MER41A LTR ERV1 1 554 0 1647 214 76 31 chrX 209469 209914 -162390016 + MER50 LTR ERV1 251 715 -19 545 121 12 0 chrX 209942 210025 -162389905 + L1MB2 LINE L1 6023 6106 -65 841 147 0 15 chrX 210051 210187 -162389743 - AluJb SINE Alu -177 135 2 333 149 15 0 chrX 210187 210254 -162389676 + L1MB2 LINE L1 6100 6167 -4 2050 136 3 0 chrX 210526 210836 -162389094 - AluSx SINE Alu -1 311 1 293 89 0 0 chrX 211068 211113 -162388817 - Alu SINE Alu -7 295 251 720 162 0 0 chrX 211166 211277 -162388653 - AluSg/x SINE Alu -7 305 195 1578 170 3 17 chrX 211327 211621 -162388309 + AluJb SINE Alu 1 290 -22 367 260 10 0 chrX 211686 211782 -162388148 - MIR SINE MIR -42 220 124 466 204 21 126 chrX 211903 212007 -162387923 + L1MC4 LINE L1 6822 6899 -1143 2279 90 0 0 chrX 212007 212308 -162387622 + AluSx SINE Alu 1 301 -11 466 204 21 126 chrX 212308 212394 -162387536 + L1MC4 LINE L1 6899 6992 -1050 944 147 0 35 chrX 212394 212564 -162387366 + FRAM SINE Alu 1 163 -13 238 353 45 8 chrX 212667 212800 -162387130 + L1MC4 LINE L1 7092 7229 -813 1638 163 6 38 chrX 212997 213317 -162386613 + AluJo SINE Alu 1 310 -2 2149 124 7 0 chrX 213346 213653 -162386277 - AluSx SINE Alu -3 309 1 22 0 0 0 chrX 213661 213683 -162386247 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 214007 214036 -162385894 + AT_rich Low_complexity Low_complexity 1 29 0 327 230 0 0 chrX 214036 214110 -162385820 - L1PA16 LINE L1 -9 6157 6084 1164 147 0 11 chrX 214139 214316 -162385614 - MER4A LTR ERV1 0 664 490 825 114 8 0 chrX 214671 214803 -162385127 - L1MA5A LINE L1 -226 6071 5939 1183 149 4 54 chrX 214823 214841 -162385089 + L1MA5A LINE L1 6065 6082 -215 3582 127 15 2 chrX 214841 215361 -162384569 + MER1A DNA MER1_type 1 527 0 1183 149 4 54 chrX 215361 215583 -162384347 + L1MA5A LINE L1 6082 6293 -4 1824 151 0 7 chrX 215684 215988 -162383942 - AluSx SINE Alu -10 302 1 1665 160 17 0 chrX 218033 218321 -162381609 - AluJo SINE Alu -18 294 2 294 175 0 0 chrX 218474 218531 -162381399 - MER4-int LTR ERV1 -5430 1168 1112 243 0 0 0 chrX 218756 218783 -162381147 + (CA)n Simple_repeat Simple_repeat 2 28 0 525 132 40 20 chrX 218907 219059 -162380871 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 538 154 22 33 chrX 219090 219272 -162380658 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 297 136 36 27 chrX 219337 219383 -162380547 + (TAGA)n Simple_repeat Simple_repeat 3 47 -66 2170 90 17 0 chrX 219383 219682 -162380248 + AluSx SINE Alu 1 304 -8 297 136 36 27 chrX 219682 219745 -162380185 + (TAGA)n Simple_repeat Simple_repeat 47 113 0 21 0 0 0 chrX 219851 219872 -162380058 + AT_rich Low_complexity Low_complexity 1 21 0 1345 161 93 43 chrX 220378 220680 -162379250 + AluJb SINE Alu 1 312 0 849 119 0 0 chrX 221865 221983 -162377947 + FLAM_C SINE Alu 1 118 -25 1985 34 0 4 chrX 221990 222224 -162377706 - AluY SINE Alu -21 290 58 1938 117 0 0 chrX 222333 222606 -162377324 - AluSq SINE Alu -40 273 1 324 206 100 123 chrX 222606 222776 -162377154 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 222784 222899 -162377031 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 222949 223245 -162376685 - AluSx SINE Alu -14 298 12 1261 248 3 0 chrX 223264 223575 -162376355 - AluJb SINE Alu 0 312 1 22 0 0 0 chrX 224056 224078 -162375852 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chrX 224221 224248 -162375682 + (A)n Simple_repeat Simple_repeat 1 27 0 546 227 161 39 chrX 224757 224861 -162375069 + MLT1J2 LTR MaLR 126 216 -234 653 248 25 20 chrX 224861 225063 -162374867 - MER105 DNA DNA -1 203 1 546 227 161 39 chrX 225063 225229 -162374701 + MLT1J2 LTR MaLR 216 450 0 296 338 46 70 chrX 225624 225908 -162374022 - L2 LINE L2 -55 3258 2982 1792 135 40 20 chrX 226169 226472 -162373458 - AluSx SINE Alu -3 309 1 1091 196 12 80 chrX 226492 226914 -162373016 + L1MA9 LINE L1 5946 6324 -10 25 31 0 0 chrX 226919 226951 -162372979 + AT_rich Low_complexity Low_complexity 1 32 0 228 306 105 24 chrX 227143 227267 -162372663 - MIR SINE MIR -74 188 55 2052 102 0 3 chrX 228545 228875 -162371055 - AluSx SINE Alu 0 329 1 550 293 99 92 chrX 229336 229779 -162370151 + L1MEc LINE L1 786 1156 -5049 1967 106 0 3 chrX 229779 230092 -162369838 + AluSx SINE Alu 1 312 0 550 293 99 92 chrX 230092 230201 -162369729 + L1MEc LINE L1 1156 1263 -4942 1771 147 16 3 chrX 230340 230646 -162369284 + AluJb SINE Alu 1 310 -2 1915 172 21 3 chrX 230887 231213 -162368717 + MER2 DNA MER2_type 7 338 -7 1276 99 0 6 chrX 231430 231612 -162368318 - L1PA8 LINE L1 0 6172 5992 880 64 0 0 chrX 231804 231914 -162368016 - AluSx SINE Alu -9 303 194 978 128 0 0 chrX 231915 232056 -162367874 - AluSx SINE Alu -172 141 1 2128 118 0 3 chrX 232163 232469 -162367461 - AluSx SINE Alu -7 305 1 502 146 12 0 chrX 232469 232551 -162367379 + Tigger5 DNA MER2_type 2241 2323 0 4978 136 13 19 chrX 233456 233786 -162366144 - L1MA5A LINE L1 0 6297 5967 1746 152 3 3 chrX 233786 234069 -162365861 - AluJb SINE Alu -29 283 1 4978 136 13 19 chrX 234069 234596 -162365334 - L1MA5A LINE L1 -330 5967 5445 2032 126 13 10 chrX 235223 235533 -162364397 + AluSx SINE Alu 1 311 -1 453 134 62 52 chrX 235715 235812 -162364118 + MER4A LTR ERV1 1 98 -566 1686 103 22 43 chrX 235812 236131 -162363799 + MER4A LTR ERV1 263 633 -31 1852 201 40 49 chrX 237197 237678 -162362252 - MLT1D LTR MaLR -1 488 27 189 361 0 0 chrX 238307 238368 -162361562 + L2 LINE L2 3208 3268 -4 2125 121 0 0 chrX 238562 238867 -162361063 + AluSx SINE Alu 1 305 -7 180 0 0 0 chrX 238928 238948 -162360982 + (A)n Simple_repeat Simple_repeat 1 20 0 349 209 85 69 chrX 240744 240960 -162358970 - MER106B DNA MER1_type -10 1049 3 965 252 103 50 chrX 241046 241105 -162358825 - Charlie1b DNA MER1_type -2259 502 448 1804 150 7 16 chrX 241105 241412 -162358518 - AluJb SINE Alu -8 304 1 965 252 103 50 chrX 241412 241829 -162358101 - Charlie1b DNA MER1_type -2313 448 1 391 307 0 0 chrX 241882 242035 -162357895 + (TA)n Simple_repeat Simple_repeat 2 154 0 259 141 16 62 chrX 242051 242179 -162357751 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 203 146 0 42 chrX 242209 242257 -162357673 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 344 145 5 72 chrX 242283 242476 -162357454 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 568 145 11 43 chrX 242506 242692 -162357238 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 702 11 32 0 chrX 242777 242872 -162357058 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 524 191 0 71 chrX 243609 243653 -162356277 + MER58A DNA MER1_type 45 91 -250 1512 135 9 120 chrX 243653 243986 -162355944 - AluJo SINE Alu -16 296 1 524 191 0 71 chrX 243986 244004 -162355926 + MER58A DNA MER1_type 91 109 -232 1899 205 6 0 chrX 244004 244350 -162355580 + MER7A DNA MER2_type 1 346 0 524 191 0 71 chrX 244350 244412 -162355518 + MER58A DNA MER1_type 109 161 -63 2019 140 7 0 chrX 244655 244940 -162354990 - AluSx SINE Alu -25 287 1 1274 148 14 0 chrX 245156 245366 -162354564 + AluSg/x SINE Alu 86 298 -14 2183 93 14 0 chrX 246085 246401 -162353529 + AluSx SINE Alu 1 320 0 1260 115 0 0 chrX 246407 246581 -162353349 + AluSg/x SINE Alu 131 304 -8 1848 234 84 40 chrX 247136 247325 -162352605 + L1MC4a LINE L1 6787 6966 -842 1994 146 0 7 chrX 247325 247619 -162352311 - AluJo SINE Alu -20 292 1 1848 234 84 40 chrX 247619 248048 -162351882 + L1MC4a LINE L1 6966 7439 -369 2083 110 7 0 chrX 248048 248350 -162351580 + AluSx SINE Alu 1 304 0 1848 234 84 40 chrX 248350 248387 -162351543 + L1MC4a LINE L1 7439 7473 -335 2813 74 94 5 chrX 248661 249066 -162350864 - LTR7 LTR ERV1 -9 441 1 1846 161 3 11 chrX 249435 249759 -162350171 - AluJo SINE Alu 0 322 1 229 314 93 21 chrX 249767 249961 -162349969 - HAL1 LINE L1 -767 1740 1533 245 284 176 12 chrX 249981 250231 -162349699 - HAL1 LINE L1 -1059 1448 1158 253 299 69 0 chrX 250402 250489 -162349441 - L1ME LINE L1 -401 5720 5628 717 106 10 0 chrX 250808 250912 -162349018 - L1MA2 LINE L1 -56 6248 6144 2281 79 23 13 chrX 251032 251335 -162348595 - AluSx SINE Alu -6 306 1 552 255 60 0 chrX 251616 251765 -162348165 + MER20 DNA MER1_type 48 205 -14 423 0 0 0 chrX 251841 251888 -162348042 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1967 105 3 57 chrX 251889 252185 -162347745 - AluSx SINE Alu -32 280 1 1593 159 4 15 chrX 252822 253092 -162346838 - AluJo SINE Alu -5 307 41 30 0 0 0 chrX 253185 253215 -162346715 + AT_rich Low_complexity Low_complexity 1 30 0 2237 113 0 25 chrX 253217 253536 -162346394 + AluSx SINE Alu 1 311 -1 318 203 0 0 chrX 253539 253603 -162346327 + L1MC4 LINE L1 6640 6703 -1339 23 0 0 0 chrX 253604 253627 -162346303 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 253649 253684 -162346246 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 253702 253724 -162346206 + AT_rich Low_complexity Low_complexity 1 22 0 507 268 0 0 chrX 253754 253933 -162345997 + (TA)n Simple_repeat Simple_repeat 1 179 0 234 197 53 53 chrX 253959 254035 -162345895 + L1MC3 LINE L1 6571 6646 -1139 652 221 2 10 chrX 254035 254627 -162345303 + (CATATA)n Simple_repeat Simple_repeat 1 587 0 214 270 0 58 chrX 254676 254850 -162345080 + (CATATA)n Simple_repeat Simple_repeat 2 165 0 243 231 103 0 chrX 254853 254931 -162344999 - L1MC4 LINE L1 -1344 6698 6613 1744 170 0 38 chrX 255434 255752 -162344178 + AluJb SINE Alu 1 306 -6 2070 128 10 3 chrX 256263 256559 -162343371 + AluJb SINE Alu 1 298 -14 1760 174 16 10 chrX 256883 257193 -162342737 + AluJo SINE Alu 1 312 0 630 168 23 12 chrX 257907 258080 -162341850 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 600 134 53 12 chrX 258113 258284 -162341646 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 682 116 35 17 chrX 258298 258470 -162341460 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 448 86 86 19 chrX 258525 258687 -162341243 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 181 158 53 0 chrX 258717 258774 -162341156 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1320 161 87 0 chrX 259316 259570 -162340360 - L1MB5 LINE L1 -6 6168 5893 1510 178 68 0 chrX 259609 259902 -162340028 - L1MB5 LINE L1 -14 6160 5848 837 251 55 42 chrX 260488 260891 -162339039 + HAL1 LINE L1 970 1377 -1130 348 83 0 0 chrX 260908 260956 -162338974 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 302 260 123 62 chrX 261008 261300 -162338630 + HAL1 LINE L1 1404 1713 -794 23 0 0 0 chrX 261322 261345 -162338585 + AT_rich Low_complexity Low_complexity 1 23 0 901 179 7 0 chrX 261345 261490 -162338440 + FRAM SINE Alu 12 157 -19 393 22 0 0 chrX 261491 261537 -162338393 + (TG)n Simple_repeat Simple_repeat 2 47 0 1601 179 23 0 chrX 262404 262667 -162337263 - AluJo SINE Alu -25 287 19 1792 111 16 46 chrX 262682 262988 -162336942 - AluJo SINE Alu -10 302 6 905 173 113 90 chrX 263555 263910 -162336020 - MLT1C LTR MaLR 0 390 61 3924 107 42 23 chrX 263910 264509 -162335421 + MER4B LTR ERV1 1 610 0 905 173 113 90 chrX 264509 264567 -162335363 - MLT1C LTR MaLR -329 61 6 1980 177 8 20 chrX 265943 266338 -162333592 + MLT1B LTR MaLR 1 390 0 1588 128 76 49 chrX 266364 266541 -162333389 + MLT1B LTR MaLR 1 191 -199 2230 110 0 0 chrX 266541 266833 -162333097 + AluSp SINE Alu 1 292 -21 1588 128 76 49 chrX 266833 266943 -162332987 + MLT1B LTR MaLR 191 296 -94 487 265 19 31 chrX 267183 267345 -162332585 + Charlie1 DNA MER1_type 2163 2322 -439 259 246 33 16 chrX 267753 267814 -162332116 - HERVL74 LTR ERVL -4776 909 848 924 130 0 0 chrX 268010 268133 -162331797 + FLAM_C SINE Alu 1 123 -20 23 54 0 0 chrX 268133 268170 -162331760 + AT_rich Low_complexity Low_complexity 1 37 0 1945 141 7 7 chrX 268431 268737 -162331193 - AluJo SINE Alu -6 306 1 26 0 0 0 chrX 269798 269824 -162330106 + GC_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chrX 269953 269990 -162329940 + GC_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chrX 270097 270131 -162329799 + GC_rich Low_complexity Low_complexity 1 34 0 189 154 0 0 chrX 270346 270385 -162329545 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 222 236 0 18 chrX 270428 270483 -162329447 + (CATG)n Simple_repeat Simple_repeat 3 56 0 358 270 3 17 chrX 270530 270893 -162329037 + (TGAA)n Simple_repeat Simple_repeat 1 357 0 198 289 0 0 chrX 270912 271061 -162328869 + (TGAA)n Simple_repeat Simple_repeat 4 152 0 195 162 0 0 chrX 271121 271158 -162328772 + (TGAG)n Simple_repeat Simple_repeat 1 37 0 321 304 19 6 chrX 271165 271326 -162328604 + (TGAA)n Simple_repeat Simple_repeat 1 163 0 403 186 0 16 chrX 271408 271537 -162328393 + (TGAA)n Simple_repeat Simple_repeat 4 130 0 427 216 28 33 chrX 271560 271818 -162328112 + (TGAG)n Simple_repeat Simple_repeat 1 256 0 3513 171 2 0 chrX 272279 272869 -162327061 - L1PB4 LINE L1 -3 6153 5563 593 264 46 42 chrX 273368 273584 -162326346 - MER20 DNA MER1_type -2 217 1 565 131 51 17 chrX 273586 273806 -162326124 + (TAGA)n Simple_repeat Simple_repeat 1 262 -15 246 32 0 0 chrX 273806 273837 -162326093 + (ATG)n Simple_repeat Simple_repeat 2 32 0 565 131 51 17 chrX 273837 273854 -162326076 + (TAGA)n Simple_repeat Simple_repeat 262 277 0 296 171 51 8 chrX 273975 274092 -162325838 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 460 241 89 0 chrX 274095 274207 -162325723 - MER20 DNA MER1_type -5 214 93 299 225 81 38 chrX 274321 274481 -162325449 + MER5A DNA MER1_type 23 189 0 758 163 0 23 chrX 275138 275267 -162324663 + FLAM_C SINE Alu 1 126 -17 1625 171 23 33 chrX 275279 275583 -162324347 + AluJo SINE Alu 1 301 -11 22 0 0 0 chrX 275777 275799 -162324131 + AT_rich Low_complexity Low_complexity 1 22 0 2361 105 3 0 chrX 275941 276245 -162323685 - AluSx SINE Alu -7 305 1 378 316 117 10 chrX 276386 276592 -162323338 + MLT1L LTR MaLR 344 571 -44 2386 86 0 7 chrX 276731 277035 -162322895 - AluSx SINE Alu -10 302 1 228 276 23 11 chrX 277036 277123 -162322807 - Charlie1 DNA MER1_type -32 2729 2642 2201 199 81 25 chrX 277157 277785 -162322145 - Charlie1 DNA MER1_type -94 2667 2005 1727 178 0 7 chrX 277889 278187 -162321743 + AluJo SINE Alu 1 296 -16 239 297 133 36 chrX 278188 278353 -162321577 - L2 LINE L2 -15 3298 3118 1633 174 10 34 chrX 279506 279804 -162320126 - AluJo SINE Alu -21 291 1 2340 74 0 3 chrX 279854 280163 -162319767 + AluSx SINE Alu 1 308 0 1910 170 0 7 chrX 280455 280755 -162319175 - AluJo SINE Alu -14 298 1 25 31 0 0 chrX 280818 280850 -162319080 + AT_rich Low_complexity Low_complexity 1 32 0 742 111 0 16 chrX 281739 281865 -162318065 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 1618 170 62 4 chrX 281865 282141 -162317789 - AluJo SINE Alu -20 292 1 1952 139 70 17 chrX 282277 282621 -162317309 - Tigger2a DNA MER2_type -72 362 1 198 0 0 0 chrX 283119 283141 -162316789 + (TG)n Simple_repeat Simple_repeat 2 23 0 242 154 19 39 chrX 284648 284700 -162315230 + L1M4c LINE L1 2440 2490 -3894 314 153 68 0 chrX 284743 284802 -162315128 + L1MA9 LINE L1 6250 6312 0 463 63 0 0 chrX 284921 284984 -162314946 + L1MA9 LINE L1 6250 6312 0 352 204 28 106 chrX 285939 286081 -162313849 - MER96B DNA MER1_type? -285 132 2 206 265 0 0 chrX 286911 286960 -162312970 + T-rich Low_complexity Low_complexity 1 49 0 294 215 0 51 chrX 286963 287042 -162312888 - U13 snRNA snRNA -2 102 28 2247 113 0 13 chrX 287046 287356 -162312574 + AluSx SINE Alu 1 306 -6 550 114 0 0 chrX 287674 287753 -162312177 - MADE1 DNA Mariner 0 80 2 243 0 0 0 chrX 287986 288013 -162311917 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2260 108 0 0 chrX 288020 288308 -162311622 - AluSx SINE Alu -24 288 1 722 181 0 0 chrX 288311 288427 -162311503 - FLAM_A SINE Alu -15 127 12 1357 285 85 21 chrX 288905 289385 -162310545 + MLT1H LTR MaLR 39 549 0 230 366 74 25 chrX 289386 289588 -162310342 + L2 LINE L2 2467 2678 -636 189 319 7 83 chrX 289756 289900 -162310030 + L2 LINE L2 2952 3084 -188 412 241 107 0 chrX 290782 290894 -162309036 - L2 LINE L2 -5 3308 3185 476 298 24 6 chrX 291068 291236 -162308694 + (CA)n Simple_repeat Simple_repeat 2 172 0 205 167 17 17 chrX 291290 291350 -162308580 + (CA)n Simple_repeat Simple_repeat 1 60 0 336 367 6 22 chrX 291383 291563 -162308367 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 344 360 12 6 chrX 291804 291965 -162307965 + (CA)n Simple_repeat Simple_repeat 1 162 0 27 0 0 0 chrX 292575 292602 -162307328 + AT_rich Low_complexity Low_complexity 1 27 0 1619 173 23 27 chrX 292613 292914 -162307016 + AluJo SINE Alu 1 300 -12 2156 157 3 9 chrX 293033 293423 -162306507 + MLT1B LTR MaLR 4 467 0 1206 187 4 0 chrX 293423 293648 -162306282 + MLT1B LTR MaLR 158 383 -7 2034 128 9 31 chrX 294427 294527 -162305403 + AluJo SINE Alu 1 102 -210 3245 163 15 91 chrX 294527 294799 -162305131 + LTR8 LTR ERV1 2 293 -398 2144 138 0 0 chrX 294799 295110 -162304820 + AluSx SINE Alu 1 311 -1 3245 163 15 91 chrX 295110 295584 -162304346 + LTR8 LTR ERV1 293 691 0 2034 128 9 31 chrX 295584 295802 -162304128 + AluJo SINE Alu 102 312 0 1933 219 31 103 chrX 295866 296485 -162303445 + LTR8 LTR ERV1 1 663 -28 1873 176 0 7 chrX 296485 296786 -162303144 + AluJo SINE Alu 1 299 -13 3400 138 17 87 chrX 296794 296935 -162302995 + LTR9 LTR ERV1 1 150 -462 2733 26 3 0 chrX 296935 297242 -162302688 + AluY SINE Alu 1 308 -3 3400 138 17 87 chrX 297242 297758 -162302172 + LTR9 LTR ERV1 150 612 0 1933 219 31 103 chrX 297758 297874 -162302056 + LTR8 LTR ERV1 670 691 0 1977 133 44 3 chrX 297943 298236 -162301694 - AluJb SINE Alu -7 305 1 1606 174 91 23 chrX 298452 298838 -162301092 + LTR49 LTR ERV1 1 412 -183 1489 127 4 8 chrX 298860 299096 -162300834 + L1PA15 LINE L1 5718 5952 -213 953 161 174 58 chrX 299096 299406 -162300524 + MER4A LTR ERV1 1 346 -318 347 145 40 13 chrX 299487 299563 -162300367 + MER4C LTR ERV1 279 356 -109 1479 108 0 0 chrX 299643 299855 -162300075 + L1PA15 LINE L1 5949 6160 -5 801 209 25 0 chrX 299855 300018 -162299912 + LTR29 LTR ERV1 456 622 0 225 94 0 0 chrX 300040 300072 -162299858 + (A)n Simple_repeat Simple_repeat 1 32 0 1084 89 0 0 chrX 300136 300271 -162299659 + AluSq/x SINE Alu 1 135 -178 2320 118 3 0 chrX 300271 300577 -162299353 + AluSx SINE Alu 1 307 -5 2242 106 0 52 chrX 300863 301192 -162298738 - AluJo SINE Alu 0 312 1 354 98 0 0 chrX 301332 301383 -162298547 + (TG)n Simple_repeat Simple_repeat 1 51 0 344 283 18 53 chrX 302432 302545 -162297385 - L1MC4 LINE L1 -1339 6703 6595 341 296 104 52 chrX 302539 302809 -162297121 + L1ME4a LINE L1 5684 5967 -154 * 336 179 0 64 chrX 302751 302829 -162297101 - L1MCa LINE L1 -4359 2067 1995 * 328 222 33 67 chrX 302811 302901 -162297029 + L1MC4 LINE L1 6614 6700 -1342 * 241 213 27 7 chrX 302903 302986 -162296944 + (TA)n Simple_repeat Simple_repeat 1 90 -63 2303 112 0 0 chrX 302986 303289 -162296641 + AluSg1 SINE Alu 1 303 -6 241 213 27 7 chrX 303289 303355 -162296575 + (TA)n Simple_repeat Simple_repeat 90 153 0 310 301 0 43 chrX 303404 303497 -162296433 + L1MC4 LINE L1 6615 6703 -1339 * 312 295 0 42 chrX 303474 303569 -162296361 + L1MC4 LINE L1 6615 6705 -1337 309 231 18 4 chrX 303572 303803 -162296127 + (TA)n Simple_repeat Simple_repeat 1 234 0 388 271 6 35 chrX 303811 303981 -162295949 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 1709 122 52 15 chrX 305767 306038 -162293892 + AluJo SINE Alu 30 310 -2 1628 163 3 91 chrX 306242 306359 -162293571 + AluJb SINE Alu 1 127 -185 312 27 0 0 chrX 306359 306396 -162293534 + (CA)n Simple_repeat Simple_repeat 2 38 0 1628 163 3 91 chrX 306396 306609 -162293321 + AluJb SINE Alu 127 302 -10 2147 119 3 32 chrX 306629 306941 -162292989 - AluSx SINE Alu -9 303 1 325 337 49 33 chrX 307185 307369 -162292561 - L2 LINE L2 -27 3286 3100 1936 106 14 28 chrX 308134 308416 -162291514 - AluSx SINE Alu -23 289 12 2234 124 3 0 chrX 308416 308723 -162291207 - AluSx SINE Alu -4 308 1 318 231 141 45 chrX 308740 308761 -162291169 + L1ME LINE L1 738 756 -5324 1361 191 33 88 chrX 308761 309091 -162290839 + AluJo SINE Alu 1 312 0 318 231 141 45 chrX 309091 309225 -162290705 + L1ME LINE L1 756 2043 -4037 1588 209 0 16 chrX 309692 309998 -162289932 - AluJo SINE Alu -11 301 1 2329 106 0 0 chrX 310076 310369 -162289561 - AluSq SINE Alu -20 293 1 183 196 0 98 chrX 310493 310544 -162289386 + L2 LINE L2 3000 3045 -227 1043 137 6 12 chrX 310844 311005 -162288925 - FRAM SINE Alu -16 160 1 2378 103 0 0 chrX 311015 311317 -162288613 - AluSq SINE Alu -11 302 1 670 93 9 0 chrX 311587 311695 -162288235 - MLT1B LTR MaLR -123 267 159 1299 140 5 11 chrX 311696 311931 -162287999 - MLT1B LTR MaLR 0 467 158 2122 155 11 12 chrX 311931 312322 -162287608 - MLT1B LTR MaLR 0 467 1 2303 109 0 26 chrX 312374 312686 -162287244 + AluSx SINE Alu 1 304 -8 3952 109 24 82 chrX 313357 314062 -162285868 + MER4A LTR ERV1 1 664 0 2195 107 43 0 chrX 314342 314641 -162285289 - AluSx SINE Alu 0 312 1 294 50 0 0 chrX 314925 314965 -162284965 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 2096 127 3 0 chrX 314965 315249 -162284681 - AluSx SINE Alu -27 285 1 304 302 19 9 chrX 315520 315626 -162284304 + CT-rich Low_complexity Low_complexity 2 108 0 3017 183 19 72 chrX 315863 316590 -162283340 + LTR8 LTR ERV1 3 691 0 4664 85 41 0 chrX 317247 317881 -162282049 - PABL_A LTR ERV1 0 660 1 627 111 0 10 chrX 317919 318018 -162281912 + MER4A LTR ERV1 1 98 -566 419 189 7 45 chrX 318018 318166 -162281764 + MER4A LTR ERV1 261 461 -203 2071 115 35 0 chrX 318206 318494 -162281436 - AluSg SINE Alu -12 298 1 23 33 0 0 chrX 318502 318532 -162281398 + AT_rich Low_complexity Low_complexity 1 30 0 227 30 0 30 chrX 318726 318759 -162281171 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 990 186 4 75 chrX 318907 318995 -162280935 - MER2 DNA MER2_type -135 210 117 2230 123 0 0 chrX 318995 319295 -162280635 + AluSx SINE Alu 1 300 -12 990 186 4 75 chrX 319295 319432 -162280498 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 319532 319553 -162280377 + (TTA)n Simple_repeat Simple_repeat 2 22 0 904 154 28 0 chrX 319593 319736 -162280194 - AluSg/x SINE Alu -13 299 153 263 258 70 8 chrX 319737 319865 -162280065 - L1M4 LINE L1 -1031 5115 4980 2060 111 42 7 chrX 319878 320166 -162279764 + AluSx SINE Alu 1 298 -14 2042 138 13 10 chrX 320370 320681 -162279249 - AluJo SINE Alu 0 312 1 1138 61 0 0 chrX 321031 321163 -162278767 - AluY SINE Alu -179 132 1 1167 175 0 0 chrX 321320 321509 -162278421 - AluJb SINE Alu -1 311 123 1625 61 5 14 chrX 322068 322280 -162277650 - AluYa5 SINE Alu -3 308 99 4052 71 18 7 chrX 322280 322832 -162277098 + LTR6B LTR ERV1 1 558 0 900 40 0 0 chrX 322833 322934 -162276996 - AluYa5 SINE Alu -210 101 1 2443 109 0 0 chrX 322956 323268 -162276662 - AluSx SINE Alu 0 312 1 3784 194 19 4 chrX 323301 324054 -162275876 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 324605 324633 -162275297 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1140 114 0 0 chrX 325041 325087 -162274843 + (TTCC)n Simple_repeat Simple_repeat 1 222 0 1140 114 0 0 chrX 325087 325263 -162274667 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 1179 112 0 0 chrX 325281 325460 -162274470 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 415 216 11 28 chrX 325703 325884 -162274046 + CT-rich Low_complexity Low_complexity 3 180 0 23 54 0 0 chrX 325895 325932 -162273998 + AT_rich Low_complexity Low_complexity 1 37 0 2668 204 31 4 chrX 326209 326754 -162273176 - L1MB5 LINE L1 0 6174 5615 1674 190 3 31 chrX 327788 328109 -162271821 + AluJo SINE Alu 1 312 0 1289 191 22 4 chrX 328539 328811 -162271119 - L1MB5 LINE L1 -89 6085 5809 418 247 159 12 chrX 328957 329127 -162270803 + MLT1J2 LTR MaLR 256 450 0 228 378 56 14 chrX 329403 329546 -162270384 - MIR SINE MIR -11 251 103 2266 131 0 0 chrX 330144 330456 -162269474 - AluSx SINE Alu 0 312 1 3015 143 18 64 chrX 331824 332077 -162267853 + MER39B LTR ERV1 2 265 -388 2619 52 0 3 chrX 332077 332384 -162267546 + AluY SINE Alu 1 306 -5 3015 143 18 64 chrX 332384 332503 -162267427 + MER39B LTR ERV1 265 388 -265 2462 73 0 0 chrX 332503 332791 -162267139 + AluSc SINE Alu 1 288 -21 3015 143 18 64 chrX 332791 333072 -162266858 + MER39B LTR ERV1 388 626 -27 396 59 0 0 chrX 333525 333576 -162266354 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1944 147 0 17 chrX 333576 333876 -162266054 - AluSg SINE Alu -15 295 1 2090 143 0 0 chrX 333876 334183 -162265747 - AluSx SINE Alu -5 307 1 3396 147 11 0 chrX 334501 335044 -162264886 - MER41A LTR ERV1 0 554 6 3172 166 46 88 chrX 335049 335628 -162264302 - LTR39 LTR ERV1 -8 775 238 1960 135 10 10 chrX 335628 335916 -162264014 + AluSx SINE Alu 1 288 -24 3172 166 46 88 chrX 335916 336145 -162263785 - LTR39 LTR ERV1 -545 238 1 334 278 21 10 chrX 336899 336996 -162262934 - MER5A DNA MER1_type -86 103 6 1297 178 9 0 chrX 337005 337235 -162262695 - MLT1B LTR MaLR -1 389 158 1152 175 5 24 chrX 337235 337472 -162262458 - MLT1B LTR MaLR 0 467 159 2197 167 8 13 chrX 337473 337862 -162262068 - MLT1B LTR MaLR 0 390 4 1980 195 4 30 chrX 337891 338185 -162261745 - MLT1B LTR MaLR 0 396 111 2162 69 33 33 chrX 338185 338488 -162261442 - AluY SINE Alu -8 303 1 1980 195 4 30 chrX 338488 338597 -162261333 - MLT1B LTR MaLR -285 111 1 938 97 0 156 chrX 338750 338936 -162260994 - AluSg/x SINE Alu -18 292 136 792 254 46 0 chrX 339634 339831 -162260099 - MER20 DNA MER1_type 0 219 14 602 149 19 7 chrX 339849 340003 -162259927 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 327 194 37 37 chrX 340014 340122 -162259808 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 865 228 47 9 chrX 340139 340350 -162259580 - MER20 DNA MER1_type 0 219 1 337 194 62 131 chrX 340536 340696 -162259234 + MER5A DNA MER1_type 41 189 0 2188 125 0 0 chrX 340940 341252 -162258678 - AluSx SINE Alu 0 312 1 3947 179 80 9 chrX 341487 342258 -162257672 + LTR1B LTR ERV1 1 826 0 1034 187 41 8 chrX 342344 342590 -162257340 - L1MA4 LINE L1 -1 6299 6046 1033 109 14 0 chrX 342886 343033 -162256897 - L1PA10 LINE L1 0 6168 6020 3628 124 26 0 chrX 343293 343833 -162256097 + MER41A LTR ERV1 1 554 0 263 280 17 68 chrX 343961 343986 -162255944 + MIR SINE MIR 111 136 -126 3471 69 21 5 chrX 343986 344423 -162255507 + MLT2A1 LTR ERVL 1 444 0 263 280 17 68 chrX 344423 344515 -162255415 + MIR SINE MIR 136 222 -40 1389 222 0 10 chrX 344546 344857 -162255073 + AluJo SINE Alu 5 312 0 1549 161 3 89 chrX 344857 345066 -162254864 - MER47A DNA MER2_type -2016 307 136 1869 128 24 14 chrX 345066 345363 -162254567 + AluSq SINE Alu 1 300 -13 1549 161 3 89 chrX 345363 345489 -162254441 - MER47A DNA MER2_type -2187 136 1 2150 113 0 0 chrX 347820 348112 -162251818 - AluSx SINE Alu -18 294 3 504 158 0 0 chrX 348170 348265 -162251665 + (TG)n Simple_repeat Simple_repeat 1 95 0 897 230 0 0 chrX 348378 348574 -162251356 + L1MB5 LINE L1 5810 6005 -169 558 191 0 9 chrX 348577 348682 -162251248 + MLT1C LTR MaLR 1 104 -363 464 80 0 148 chrX 348687 348721 -162251209 + MADE1 DNA Mariner 6 21 -59 2126 118 0 0 chrX 348721 349017 -162250913 - AluSg SINE Alu -14 296 1 464 80 0 148 chrX 349017 349070 -162250860 + MADE1 DNA Mariner 21 80 0 1074 158 136 5 chrX 349072 349293 -162250637 + MLT1C LTR MaLR 105 354 -113 1914 117 0 21 chrX 349294 349576 -162250354 + AluSx SINE Alu 1 276 -36 794 155 8 24 chrX 349576 349837 -162250093 + GA-rich Low_complexity Low_complexity 1 257 0 522 254 0 30 chrX 349837 349971 -162249959 + MLT1C LTR MaLR 338 467 0 629 189 13 75 chrX 349985 350101 -162249829 + L1MB5 LINE L1 6026 6131 -43 1664 115 58 0 chrX 350101 350361 -162249569 + AluSx SINE Alu 22 296 -16 629 189 13 75 chrX 350361 350403 -162249527 + L1MB5 LINE L1 6131 6174 0 643 207 191 104 chrX 350548 350762 -162249168 - MER58B DNA MER1_type -2079 341 90 1953 122 3 0 chrX 350762 351050 -162248880 + AluSx SINE Alu 1 289 -23 643 207 191 104 chrX 351050 351144 -162248786 - MER58B DNA MER1_type -2330 90 6 2103 124 0 6 chrX 351539 351853 -162248077 + AluSx SINE Alu 1 312 0 3364 80 0 13 chrX 352060 352510 -162247420 + MLT2A1 LTR ERVL 1 444 0 2044 123 3 0 chrX 353143 353436 -162246494 + AluSx SINE Alu 1 294 -18 225 0 0 0 chrX 353481 353506 -162246424 + (CA)n Simple_repeat Simple_repeat 2 26 0 308 277 50 0 chrX 353737 353856 -162246074 + L1M4 LINE L1 3851 3975 -2171 2321 65 0 19 chrX 353924 354232 -162245698 - AluSc SINE Alu -7 302 1 1095 95 0 0 chrX 354626 354774 -162245156 + AluSc SINE Alu 1 148 -161 276 111 0 0 chrX 356255 356300 -162243630 + (A)n Simple_repeat Simple_repeat 1 45 0 2280 90 0 0 chrX 356621 356921 -162243009 + AluSx SINE Alu 1 300 -12 186 271 21 0 chrX 357054 357102 -162242828 - L2 LINE L2 -4 3309 3261 2122 81 0 52 chrX 358819 359146 -162240784 - AluSp SINE Alu 0 313 2 1862 134 0 13 chrX 359188 359487 -162240443 + AluSx SINE Alu 2 296 -16 1580 141 6 72 chrX 359772 360091 -162239839 + AluJo SINE Alu 1 298 -14 1616 95 9 0 chrX 360204 360426 -162239504 - AluSg/x SINE Alu -17 293 70 2218 103 6 3 chrX 361145 361456 -162238474 + AluSx SINE Alu 1 312 0 2180 97 7 3 chrX 361466 361774 -162238156 + AluSc SINE Alu 1 309 0 243 0 0 0 chrX 362041 362068 -162237862 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2200 83 0 0 chrX 362078 362366 -162237564 - AluY SINE Alu -23 288 1 2473 71 0 0 chrX 362710 363021 -162236909 - AluY SINE Alu 0 311 1 517 289 168 43 chrX 364092 364335 -162235595 + HAL1 LINE L1 881 1092 -3314 2240 116 0 0 chrX 364335 364645 -162235285 + AluSx SINE Alu 1 310 -2 517 289 168 43 chrX 364645 364823 -162235107 + HAL1 LINE L1 1092 3227 -1179 578 218 12 18 chrX 365773 366120 -162233810 + GA-rich Low_complexity Low_complexity 1 344 0 376 226 33 13 chrX 366133 366501 -162233429 + GA-rich Low_complexity Low_complexity 1 375 0 401 41 0 0 chrX 366843 366892 -162233038 - MADE1 DNA Mariner -2 78 30 314 77 19 58 chrX 366887 366939 -162232991 + AluJo SINE Alu 93 142 -160 * 327 107 160 107 chrX 366931 367006 -162232924 - AluJo SINE Alu -130 172 94 * 371 80 0 0 chrX 367002 367052 -162232878 + MADE1 DNA Mariner 30 79 -1 2257 79 7 3 chrX 367328 367633 -162232297 - AluSx SINE Alu -6 306 1 1496 111 0 9 chrX 367981 368198 -162231732 - AluSg/x SINE Alu 0 309 95 21 0 0 0 chrX 368445 368466 -162231464 + AT_rich Low_complexity Low_complexity 1 21 0 2205 101 0 0 chrX 368469 368765 -162231165 + AluY SINE Alu 1 296 -15 1769 161 0 3 chrX 368769 369068 -162230862 - AluJo SINE Alu -12 300 3 974 127 11 14 chrX 369325 369616 -162230314 + THE1C LTR MaLR 1 375 0 1971 110 20 17 chrX 369805 370106 -162229824 + AluSx SINE Alu 1 302 -10 2106 109 30 0 chrX 370445 370747 -162229183 + AluSx SINE Alu 1 311 -1 2170 95 3 0 chrX 371164 371459 -162228471 + AluSq SINE Alu 1 296 -17 2350 72 0 10 chrX 371782 372088 -162227842 - AluY SINE Alu -8 303 1 1938 104 4 0 chrX 373028 373298 -162226632 + AluSx SINE Alu 1 271 -41 180 0 0 0 chrX 373308 373328 -162226602 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 23 42 0 21 chrX 373509 373539 -162226391 + AT_rich Low_complexity Low_complexity 1 31 -16 1532 191 3 10 chrX 373539 373827 -162226103 - AluJo SINE Alu -26 286 1 23 42 0 21 chrX 373827 373844 -162226086 + AT_rich Low_complexity Low_complexity 31 47 0 1987 105 0 33 chrX 373860 374028 -162225902 - AluSx SINE Alu -17 295 140 1967 124 24 0 chrX 374028 374318 -162225612 - AluSx SINE Alu -15 297 1 1987 105 0 33 chrX 374318 374454 -162225476 - AluSx SINE Alu -172 140 1 546 155 0 0 chrX 374900 374997 -162224933 + CT-rich Low_complexity Low_complexity 4 100 0 1367 118 0 15 chrX 376398 376622 -162223308 + AluSq SINE Alu 82 302 0 22 0 0 0 chrX 376798 376820 -162223110 + AT_rich Low_complexity Low_complexity 1 22 0 248 302 77 47 chrX 376882 377345 -162222585 + L1ME4a LINE L1 5481 5962 -159 1554 186 0 39 chrX 377345 377656 -162222274 + AluJo SINE Alu 1 299 -13 248 302 77 47 chrX 377656 377699 -162222231 + L1ME4a LINE L1 5962 6002 -119 2197 109 0 3 chrX 378017 378320 -162221610 + AluSx SINE Alu 3 304 -8 650 209 40 57 chrX 378808 378985 -162220945 - MER45A DNA AcHobo -4 174 1 209 232 20 71 chrX 379463 379562 -162220368 + GA-rich Low_complexity Low_complexity 2 95 0 2407 74 0 3 chrX 380272 380582 -162219348 + AluY SINE Alu 1 309 -2 1846 139 36 0 chrX 380710 381012 -162218918 + AluSq SINE Alu 1 313 0 2110 113 0 3 chrX 381574 381876 -162218054 - AluSx SINE Alu -11 301 1 1164 154 45 136 chrX 382274 382604 -162217326 + AluJo SINE Alu 1 300 -2 2204 103 0 0 chrX 382624 382924 -162217006 + AluSg SINE Alu 1 300 -10 844 231 138 7 chrX 382934 383239 -162216691 + MLT1C LTR MaLR 1 361 -144 1411 254 58 27 chrX 383254 383702 -162216228 + MLT1C LTR MaLR 6 467 0 686 226 6 19 chrX 384088 384247 -162215683 + Tigger1 DNA MER2_type 1 157 -2261 * 845 155 139 0 chrX 384240 384427 -162215503 + Tigger1 DNA MER2_type 2206 2418 0 21 36 0 0 chrX 384554 384582 -162215348 + AT_rich Low_complexity Low_complexity 1 28 0 286 243 108 0 chrX 384585 384696 -162215234 + MER69 DNA AcHobo 2313 2435 -91 512 267 21 15 chrX 385387 385714 -162214216 + (TG)n Simple_repeat Simple_repeat 1 328 0 207 216 21 21 chrX 385716 385813 -162214117 + (TATG)n Simple_repeat Simple_repeat 4 100 0 * 433 232 0 11 chrX 385800 385981 -162213949 + (TG)n Simple_repeat Simple_repeat 2 180 0 450 326 6 6 chrX 386018 386196 -162213734 + (TG)n Simple_repeat Simple_repeat 2 179 0 2240 163 21 74 chrX 386531 386889 -162213041 - L1MA8 LINE L1 -111 6180 5805 2228 99 17 7 chrX 386889 387183 -162212747 - AluSx SINE Alu -15 297 1 2240 163 21 74 chrX 387183 387247 -162212683 - L1MA8 LINE L1 -486 5805 5739 358 247 0 0 chrX 387247 387340 -162212590 - L1MB8 LINE L1 -3 6175 6083 2240 163 21 74 chrX 387340 387473 -162212457 - L1MA8 LINE L1 -552 5739 5653 319 213 11 85 chrX 387492 387586 -162212344 - L1MC4 LINE L1 -1339 6703 6617 306 227 10 82 chrX 387605 387702 -162212228 - L1MC4 LINE L1 -1339 6703 6614 300 239 44 62 chrX 387638 387751 -162212179 + L1MC3 LINE L1 6569 6679 -1106 * 2353 99 0 7 chrX 387770 388073 -162211857 + AluSg SINE Alu 1 301 -9 422 363 0 11 chrX 389184 389366 -162210564 + (TG)n Simple_repeat Simple_repeat 1 180 0 261 296 52 23 chrX 389381 389553 -162210377 + (CATG)n Simple_repeat Simple_repeat 2 178 0 * 337 368 0 16 chrX 389463 389696 -162210234 + (TG)n Simple_repeat Simple_repeat 1 229 0 184 111 44 22 chrX 389696 389741 -162210189 + (CATG)n Simple_repeat Simple_repeat 3 48 0 1955 163 0 7 chrX 391570 391890 -162208040 - AluSx SINE Alu 0 312 4 1325 89 6 0 chrX 391942 392110 -162207820 + AluSg/x SINE Alu 120 288 -22 25 0 0 0 chrX 392110 392135 -162207795 + AT_rich Low_complexity Low_complexity 1 25 0 2415 77 0 3 chrX 392552 392863 -162207067 - AluY SINE Alu -1 310 1 859 235 46 42 chrX 393191 393476 -162206454 + L1MA8 LINE L1 6004 6289 -2 1866 159 0 3 chrX 393926 394216 -162205714 + AluJb SINE Alu 1 289 -23 1992 153 36 0 chrX 394218 394519 -162205411 + AluSx SINE Alu 1 312 0 257 283 35 55 chrX 394793 394938 -162204992 + MER5A DNA MER1_type 22 163 -26 414 0 0 0 chrX 395289 395335 -162204595 + (CA)n Simple_repeat Simple_repeat 2 47 0 2103 261 45 24 chrX 395361 395852 -162204078 + MER82 DNA MER2_type 9 488 -165 2285 91 3 23 chrX 395852 396160 -162203770 + AluSx SINE Alu 1 302 -10 2103 261 45 24 chrX 396160 396200 -162203730 + MER82 DNA MER2_type 488 526 -127 896 153 0 13 chrX 396200 396357 -162203573 + L1PA14 LINE L1 6007 6161 0 2103 261 45 24 chrX 396357 396452 -162203478 + MER82 DNA MER2_type 526 649 -4 348 304 0 65 chrX 396662 396800 -162203130 + L2 LINE L2 2951 3079 -193 520 247 96 14 chrX 396866 397012 -162202918 + MER5B DNA MER1_type 6 163 -15 533 244 0 6 chrX 397647 397819 -162202111 + (TGGG)n Simple_repeat Simple_repeat 2 172 0 894 208 0 6 chrX 397836 398156 -162201774 + (TGGA)n Simple_repeat Simple_repeat 1 317 0 527 195 18 6 chrX 398170 398339 -162201591 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 954 156 0 0 chrX 398355 398606 -162201324 + (TGGA)n Simple_repeat Simple_repeat 1 251 0 218 345 86 0 chrX 398891 399007 -162200923 + MIR SINE MIR 66 191 -71 1467 197 52 7 chrX 399184 399473 -162200457 + AluSx SINE Alu 1 302 -10 2272 118 0 0 chrX 399473 399778 -162200152 + AluSg SINE Alu 1 305 -5 318 87 0 0 chrX 399781 399827 -162200103 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 1093 176 0 11 chrX 399829 400017 -162199913 + AluJo SINE Alu 118 303 -9 1244 208 0 0 chrX 400257 400464 -162199466 + AluJo SINE Alu 84 290 -22 1741 172 57 7 chrX 400472 400769 -162199161 + AluJo SINE Alu 1 312 0 2096 101 0 7 chrX 402272 402550 -162197380 + AluSq SINE Alu 35 310 -3 1442 206 77 3 chrX 402634 402998 -162196932 + MER34B LTR ERV1 148 538 -27 2046 136 0 0 chrX 403017 403303 -162196627 + AluSx SINE Alu 11 296 -16 1192 185 20 0 chrX 403314 403514 -162196416 + AluJo SINE Alu 86 289 -23 1316 175 5 0 chrX 403521 403727 -162196203 + AluSg/x SINE Alu 86 292 -20 2093 124 0 7 chrX 404173 404472 -162195458 - AluSx SINE Alu -15 297 1 602 271 15 20 chrX 404924 405127 -162194803 - MER20 DNA MER1_type 0 219 18 408 103 10 113 chrX 405720 405817 -162194113 + AluSc SINE Alu 221 307 -2 22 35 0 0 chrX 407722 407751 -162192179 + GC_rich Low_complexity Low_complexity 1 29 0 2316 97 7 0 chrX 408939 409247 -162190683 + AluSx SINE Alu 1 310 -2 2402 149 36 24 chrX 409249 409829 -162190101 - MER4E LTR ERV1 -7 759 19 1888 133 0 14 chrX 409829 410108 -162189822 - AluSx SINE Alu -1 311 37 2402 149 36 24 chrX 410108 410128 -162189802 - MER4E LTR ERV1 -747 19 1 4324 47 4 25 chrX 410221 410257 -162189673 - L1PA7 LINE L1 -2 6152 6117 2584 50 0 10 chrX 410257 410558 -162189372 + AluY SINE Alu 1 298 -13 4324 47 4 25 chrX 410558 411076 -162188854 - L1PA7 LINE L1 -37 6117 5610 1947 148 34 0 chrX 412406 412704 -162187226 - AluSq SINE Alu -5 308 1 450 176 0 0 chrX 412813 412898 -162187032 + (CA)n Simple_repeat Simple_repeat 1 85 0 2500 103 0 0 chrX 413147 413459 -162186471 + AluSx SINE Alu 1 312 0 1925 139 43 10 chrX 413489 413790 -162186140 + AluSx SINE Alu 1 311 -1 892 118 0 7 chrX 413859 413995 -162185935 + MSTA LTR MaLR 1 135 -293 391 106 152 0 chrX 413995 414061 -162185869 + MSTA LTR MaLR 353 428 0 1241 81 81 11 chrX 414061 414120 -162185810 + Charlie3 DNA MER1_type 2509 2562 -144 261 0 0 0 chrX 414120 414149 -162185781 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1241 81 81 11 chrX 414149 414274 -162185656 + Charlie3 DNA MER1_type 2562 2706 0 306 298 48 0 chrX 414307 414391 -162185539 + L1MC3 LINE L1 7163 7250 -535 726 172 0 29 chrX 414396 414642 -162185288 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 2309 95 0 10 chrX 414709 415013 -162184917 - AluY SINE Alu -10 301 1 2498 87 3 0 chrX 415013 415322 -162184608 - AluSp SINE Alu -2 311 1 752 203 0 0 chrX 415679 415812 -162184118 - FLAM_A SINE Alu 0 133 1 1242 168 33 5 chrX 415855 416069 -162183861 - AluJo SINE Alu -92 220 1 1323 217 91 29 chrX 416506 416856 -162183074 + MLT1A2 LTR MaLR 1 372 -2 226 267 13 40 chrX 416994 417069 -162182861 + MLT1J2 LTR MaLR 58 130 -320 383 299 7 95 chrX 417076 417380 -162182550 + MLT1J LTR MaLR 171 447 -64 624 263 10 0 chrX 417576 417872 -162182058 + (TGGA)n Simple_repeat Simple_repeat 1 299 0 801 213 0 0 chrX 417922 418197 -162181733 + (TGGA)n Simple_repeat Simple_repeat 1 275 0 630 208 0 0 chrX 418218 418372 -162181558 + (TGGA)n Simple_repeat Simple_repeat 4 157 0 231 125 0 0 chrX 419353 419393 -162180537 + (CA)n Simple_repeat Simple_repeat 1 40 0 2264 105 3 3 chrX 419518 419822 -162180108 + AluSg SINE Alu 1 304 -6 547 283 112 0 chrX 419830 420017 -162179913 - MLT1G1 LTR MaLR -381 214 7 182 326 62 62 chrX 420377 420570 -162179360 - L2 LINE L2 -218 3054 2862 1404 193 12 0 chrX 420578 420821 -162179109 + AluJo SINE Alu 54 299 -13 968 261 94 12 chrX 420836 421166 -162178764 + MLT1H LTR MaLR 185 541 -8 239 229 0 0 chrX 421957 422005 -162177925 + (TG)n Simple_repeat Simple_repeat 1 48 0 2268 109 13 0 chrX 422149 422451 -162177479 + AluSx SINE Alu 1 306 -6 320 305 80 45 chrX 422594 422794 -162177136 - L1MD3 LINE L1 0 7995 7789 2486 96 0 0 chrX 423046 423358 -162176572 + AluSx SINE Alu 1 312 0 1836 141 12 6 chrX 423503 423822 -162176108 + L1PB2 LINE L1 5521 5841 -310 384 163 20 82 chrX 424453 424551 -162175379 - L2 LINE L2 0 3313 3222 2028 273 61 30 chrX 424555 425511 -162174419 - L2 LINE L2 -49 3264 2153 8348 52 15 3 chrX 425639 426774 -162173156 + L1PA13 LINE L1 3682 4830 -1316 5298 113 1 4 chrX 426875 427686 -162172244 + L1PA13 LINE L1 5355 6163 0 1702 81 5 14 chrX 427686 427907 -162172023 + AluY SINE Alu 1 219 -92 3500 148 48 17 chrX 428009 428433 -162171497 + L1M1 LINE L1 2977 3386 -4179 297 0 0 0 chrX 428433 428466 -162171464 + (CA)n Simple_repeat Simple_repeat 2 34 0 3500 148 48 17 chrX 428466 429025 -162170905 + L1M1 LINE L1 3386 3994 -3571 401 155 24 60 chrX 429180 429264 -162170666 + MLT1D LTR MaLR 5 85 -420 662 167 35 7 chrX 429271 429415 -162170515 + MER96B DNA MER1_type? 265 412 -5 356 353 78 7 chrX 429440 429593 -162170337 + L2 LINE L2 3107 3270 -2 307 295 84 0 chrX 429733 429828 -162170102 - L1MC4 LINE L1 -1340 6702 6600 423 123 41 0 chrX 431295 431368 -162168562 - L1MA3 LINE L1 -5 6300 6225 703 289 58 5 chrX 432162 432370 -162167560 + MIR SINE MIR 41 259 -3 367 205 137 87 chrX 432472 432633 -162167297 + L2 LINE L2 2622 2790 -524 8004 61 8 0 chrX 434048 435096 -162164834 + L1P LINE L1 1400 2455 -3691 292 251 128 21 chrX 435208 435403 -162164527 - MLT1C LTR MaLR -147 358 127 1235 196 27 4 chrX 435403 435663 -162164267 - L1MB5 LINE L1 -100 6074 5809 667 297 114 0 chrX 436835 437054 -162162876 - MIR SINE MIR 0 262 19 212 152 15 106 chrX 437060 437126 -162162804 + MIR SINE MIR 101 160 -102 2061 132 3 0 chrX 437406 437716 -162162214 + AluSx SINE Alu 1 311 -1 817 125 8 0 chrX 437718 437846 -162162084 + L1PB2 LINE L1 6023 6151 0 1060 204 103 43 chrX 438157 438219 -162161711 - MLT1C LTR MaLR -6 461 404 2019 125 3 0 chrX 438219 438515 -162161415 + AluSx SINE Alu 4 300 -12 1060 204 103 43 chrX 438515 438781 -162161149 - MLT1C LTR MaLR -63 404 113 1093 171 11 0 chrX 438789 438976 -162160954 + MLT1B LTR MaLR 1 189 -201 700 212 71 119 chrX 438989 439201 -162160729 - MLT1C LTR MaLR -143 324 134 2021 114 0 0 chrX 439201 439490 -162160440 - AluSx SINE Alu -23 289 1 700 212 71 119 chrX 439490 439618 -162160312 - MLT1C LTR MaLR -333 134 1 767 248 109 8 chrX 439628 439933 -162159997 - MLT1C LTR MaLR -122 345 1 262 310 43 17 chrX 439951 440067 -162159863 - LTR33 LTR ERVL -370 151 33 2289 94 0 0 chrX 440142 440441 -162159489 + AluSg SINE Alu 1 299 -11 2242 95 10 0 chrX 441130 441436 -162158494 + AluSx SINE Alu 1 309 -3 670 166 19 39 chrX 442088 442604 -162157326 + (TAGA)n Simple_repeat Simple_repeat 1 800 -25 1649 196 0 0 chrX 442604 442905 -162157025 + AluJo SINE Alu 1 301 -11 670 166 19 39 chrX 442905 442931 -162156999 + (TAGA)n Simple_repeat Simple_repeat 800 825 0 334 247 26 0 chrX 443046 443123 -162156807 - MER20 DNA MER1_type 0 219 141 717 243 17 6 chrX 443149 443322 -162156608 + MLT1B LTR MaLR 293 467 0 2172 93 3 3 chrX 443377 443678 -162156252 - AluSq SINE Alu -12 301 1 649 193 96 0 chrX 443679 443814 -162156116 - MLT1A1 LTR MaLR -208 157 10 1787 157 10 3 chrX 443855 444154 -162155776 - MLT1A1 LTR MaLR -64 301 1 2273 89 0 0 chrX 444433 444735 -162155195 + AluY SINE Alu 1 302 -9 2023 123 3 3 chrX 444928 445230 -162154700 + AluSx SINE Alu 1 302 -10 485 234 0 19 chrX 445717 445824 -162154106 + MER5A DNA MER1_type 1 105 -84 2203 249 38 23 chrX 445904 446430 -162153500 - MER87 LTR ERV1 -7 534 1 233 69 0 0 chrX 446664 446693 -162153237 + (GA)n Simple_repeat Simple_repeat 1 29 0 580 161 27 13 chrX 446693 446842 -162153088 + GA-rich Low_complexity Low_complexity 4 154 0 2108 100 3 7 chrX 447426 447726 -162152204 + AluSx SINE Alu 6 304 -8 1195 168 21 66 chrX 447896 448027 -162151903 - L1MA8 LINE L1 0 6291 6156 2015 122 0 0 chrX 448027 448322 -162151608 - AluY SINE Alu -16 295 1 1195 168 21 66 chrX 448322 448476 -162151454 - L1MA8 LINE L1 -135 6156 6019 2025 227 92 50 chrX 448487 448632 -162151298 - MER50 LTR ERV1 -7 727 589 2179 106 0 3 chrX 448632 448934 -162150996 - AluSg SINE Alu -9 301 1 2025 227 92 50 chrX 448934 449360 -162150570 - MER50 LTR ERV1 -145 589 119 1743 100 104 11 chrX 449360 449629 -162150301 - AluSg1 SINE Alu -15 294 1 2025 227 92 50 chrX 449629 449753 -162150177 - MER50 LTR ERV1 -615 119 2 1031 165 11 21 chrX 449753 449941 -162149989 - L1MA8 LINE L1 -276 6015 5830 633 110 0 0 chrX 449945 450036 -162149894 - AluSg/x SINE Alu -6 304 214 1955 96 0 7 chrX 450370 450642 -162149288 + AluSx SINE Alu 43 312 0 730 84 0 0 chrX 451081 451176 -162148754 + AluY SINE Alu 2 96 -215 632 105 62 18 chrX 451279 451788 -162148142 + GA-rich Low_complexity Low_complexity 1 531 0 1870 155 153 27 chrX 451895 452307 -162147623 + MER4C LTR ERV1 1 464 -1 21 0 0 0 chrX 452449 452470 -162147460 + GC_rich Low_complexity Low_complexity 1 21 0 407 223 9 0 chrX 453067 453179 -162146751 + (TGGA)n Simple_repeat Simple_repeat 4 116 0 180 368 69 11 chrX 453306 453393 -162146537 - MIR3 SINE MIR -114 94 3 412 250 0 17 chrX 453662 453778 -162146152 + AluSp SINE Alu 2 115 -198 344 186 0 0 chrX 453778 453837 -162146093 + MLT1C LTR MaLR 357 415 -52 1664 161 4 0 chrX 453848 454127 -162145803 - AluSx SINE Alu -29 283 4 817 125 8 0 chrX 454501 454629 -162145301 - L1PB2 LINE L1 0 6151 6023 2029 134 0 6 chrX 454631 454944 -162144986 - AluSx SINE Alu -1 311 1 514 208 102 19 chrX 455477 455646 -162144284 - MER39 LTR ERV1 -1 687 471 705 133 0 9 chrX 455646 455773 -162144157 - AluSx SINE Alu 0 309 189 685 89 11 0 chrX 455770 455860 -162144070 - AluSx SINE Alu -205 107 17 * 842 197 40 100 chrX 455860 455920 -162144010 - MER39 LTR ERV1 -178 529 467 4376 69 9 0 chrX 455920 456468 -162143462 - MER41A LTR ERV1 -1 553 1 842 197 40 100 chrX 456468 456706 -162143224 - MER39 LTR ERV1 -240 467 249 242 196 20 0 chrX 456719 456770 -162143160 - MER39 LTR ERV1 -655 52 1 1701 119 4 8 chrX 457130 457381 -162142549 - L1P4 LINE L1 -575 5593 5344 344 221 0 0 chrX 457382 457459 -162142471 - MER4D LTR ERV1 -512 360 284 1831 145 20 7 chrX 457463 457767 -162142163 - AluSx SINE Alu -4 308 1 874 126 33 44 chrX 457771 457954 -162141976 - Tigger7 DNA MER2_type -92 2395 2215 1716 153 78 54 chrX 458010 458077 -162141853 - MSTA LTR MaLR -5 423 359 1995 85 11 7 chrX 458077 458358 -162141572 + AluSx SINE Alu 1 282 -30 180 0 0 0 chrX 458361 458381 -162141549 + (CA)n Simple_repeat Simple_repeat 1 20 0 1716 153 78 54 chrX 458381 458681 -162141249 - MSTA LTR MaLR -70 358 43 1149 107 24 0 chrX 458781 458949 -162140981 + AluSg/x SINE Alu 136 307 -5 2036 110 3 0 chrX 459373 459664 -162140266 - AluSx SINE Alu -18 294 3 290 315 153 20 chrX 459908 460111 -162139819 + MARNA DNA Mariner 104 333 -253 2242 107 3 0 chrX 461130 461440 -162138490 - AluSx SINE Alu -1 311 1 254 136 0 0 chrX 461692 461736 -162138194 - Alu SINE Alu -2 298 255 756 233 3 6 chrX 461836 462195 -162137735 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 368 292 21 108 chrX 462388 462524 -162137406 - MLT1J LTR MaLR -64 447 338 2185 78 0 0 chrX 462524 462842 -162137088 + AluSg SINE Alu 1 318 0 368 292 21 108 chrX 462842 462944 -162136986 - MLT1J LTR MaLR -173 338 229 180 111 0 0 chrX 462944 462971 -162136959 + (A)n Simple_repeat Simple_repeat 1 27 0 355 302 92 83 chrX 463961 464518 -162135412 + L1MB5 LINE L1 3884 4445 -1701 2053 136 3 0 chrX 464553 464862 -162135068 + AluSx SINE Alu 1 310 -2 825 119 0 0 chrX 465192 465310 -162134620 + AluSq SINE Alu 41 158 -155 375 345 58 11 chrX 465465 465656 -162134274 + L1MB5 LINE L1 5481 5680 -441 659 256 17 0 chrX 466328 466500 -162133430 - MER45A DNA AcHobo -3 175 1 1835 153 0 25 chrX 466569 466889 -162133041 + AluSx SINE Alu 1 312 0 2047 202 8 0 chrX 467329 467720 -162132210 + L1MB5 LINE L1 5745 6138 -36 2403 76 0 0 chrX 467724 468028 -162131902 + AluSg SINE Alu 1 304 -6 1394 182 14 17 chrX 468038 468334 -162131596 + AluJo SINE Alu 1 295 -17 218 237 31 31 chrX 469307 469404 -162130526 + GA-rich Low_complexity Low_complexity 2 98 0 832 145 0 22 chrX 469653 469791 -162130139 + AluJo SINE Alu 1 135 -177 327 161 0 0 chrX 470785 470841 -162129089 + L1MA7 LINE L1 6233 6288 -3 1933 104 0 0 chrX 470850 471118 -162128812 + AluSg SINE Alu 39 306 -4 897 254 40 40 chrX 471302 471601 -162128329 + Charlie4a DNA MER1_type 12 310 -198 214 245 0 47 chrX 472744 472850 -162127080 + C-rich Low_complexity Low_complexity 4 104 0 1953 112 0 3 chrX 472950 473236 -162126694 + AluSx SINE Alu 14 298 -14 181 0 33 33 chrX 473238 473268 -162126662 + (TATAA)n Simple_repeat Simple_repeat 4 33 0 2278 75 0 7 chrX 473757 474063 -162125867 + AluY SINE Alu 1 304 -7 1478 198 0 24 chrX 474262 474555 -162125375 - AluJb SINE Alu -19 293 8 237 232 0 0 chrX 474604 474673 -162125257 + GA-rich Low_complexity Low_complexity 2 70 0 309 236 28 28 chrX 474749 474855 -162125075 - MLT1J2 LTR MaLR 0 450 345 1240 202 12 62 chrX 475266 475314 -162124616 + L1MB8 LINE L1 5569 5618 -560 2123 114 91 26 chrX 475314 475656 -162124274 - THE1B LTR MaLR 0 364 1 1240 202 12 62 chrX 475656 475927 -162124003 + L1MB8 LINE L1 5618 5873 -305 1689 163 0 43 chrX 475927 476253 -162123677 + AluSx SINE Alu 1 312 0 1240 202 12 62 chrX 476253 476268 -162123662 + L1MB8 LINE L1 5873 5887 -291 274 109 43 0 chrX 476312 476358 -162123572 - MER34C LTR ERV1 -533 52 5 * 354 123 46 0 chrX 476326 476391 -162123539 - MER34C LTR ERV1 -512 73 6 382 275 50 102 chrX 477332 477632 -162122298 - LTR16C LTR ERVL -14 477 153 2392 156 51 10 chrX 477632 478043 -162121887 - MSTA LTR MaLR 0 428 1 382 275 50 102 chrX 478043 478148 -162121782 - LTR16C LTR ERVL -338 153 44 3741 121 23 62 chrX 478445 478558 -162121372 - MER41B LTR ERV1 0 635 519 1689 199 0 0 chrX 478558 478864 -162121066 + AluJo SINE Alu 1 306 -6 3741 121 23 62 chrX 478864 479411 -162120519 - MER41B LTR ERV1 -116 519 1 2268 97 0 3 chrX 479424 479732 -162120198 + AluSq SINE Alu 1 307 -6 1475 231 89 11 chrX 479775 480156 -162119774 + MER87 LTR ERV1 1 411 -130 216 0 0 0 chrX 480298 480322 -162119608 + (TTC)n Simple_repeat Simple_repeat 1 24 0 2186 92 16 0 chrX 480327 480632 -162119298 - AluSg SINE Alu 0 310 1 792 234 8 3 chrX 481534 481930 -162118000 + (TCCA)n Simple_repeat Simple_repeat 1 398 0 724 181 6 6 chrX 481947 482124 -162117806 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 257 322 128 19 chrX 482881 483092 -162116838 + MIR SINE MIR 15 248 -14 2182 121 0 3 chrX 483387 483685 -162116245 + AluSg1 SINE Alu 1 297 -12 746 176 12 44 chrX 483844 484071 -162115859 - L1M4c LINE L1 -4768 1616 1356 1903 185 83 46 chrX 484426 484906 -162115024 + MLT1D LTR MaLR 2 499 -6 2274 97 0 13 chrX 485755 486063 -162113867 - AluY SINE Alu -7 304 1 1403 96 0 5 chrX 486724 486903 -162113027 - AluSg/x SINE Alu -6 306 127 2228 102 7 0 chrX 486903 487187 -162112743 - AluSx SINE Alu -26 286 1 1619 260 48 9 chrX 487438 487877 -162112053 + MLT1D LTR MaLR 1 456 -49 827 181 0 0 chrX 488029 488162 -162111768 - FLAM_C SINE Alu 0 133 1 1888 176 3 0 chrX 488168 488474 -162111456 - AluSx SINE Alu -5 307 1 1720 120 0 4 chrX 489088 489321 -162110609 + AluSg SINE Alu 4 235 -75 1223 123 24 0 chrX 489421 489611 -162110319 + AluSg/x SINE Alu 110 303 0 2340 94 3 0 chrX 490341 490639 -162109291 + AluSp SINE Alu 1 299 -14 307 286 0 0 chrX 490822 490899 -162109031 + (TG)n Simple_repeat Simple_repeat 2 78 0 558 205 3 30 chrX 490904 491239 -162108691 + (TATG)n Simple_repeat Simple_repeat 1 325 0 208 234 0 37 chrX 491263 491370 -162108560 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1702 160 79 18 chrX 491764 492078 -162107852 + MER65A LTR ERV1 82 420 -25 1995 142 80 17 chrX 492078 492480 -162107450 - MSTA LTR MaLR 0 428 2 1702 160 79 18 chrX 492480 492508 -162107422 + MER65A LTR ERV1 420 445 0 319 230 12 21 chrX 493277 493619 -162106311 + (TCTA)n Simple_repeat Simple_repeat 1 338 0 367 170 22 39 chrX 493648 493830 -162106100 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2363 102 0 0 chrX 494131 494434 -162105496 - AluSx SINE Alu -9 303 1 2364 94 3 0 chrX 494444 494742 -162105188 - AluSp SINE Alu -14 299 1 1248 110 0 0 chrX 495605 495769 -162104161 - AluSg/x SINE Alu -15 295 132 2237 111 0 3 chrX 495769 496075 -162103855 - AluSx SINE Alu -7 305 1 3238 169 9 0 chrX 496192 496732 -162103198 + L1PA16 LINE L1 5584 6128 -38 280 243 9 9 chrX 496878 496985 -162102945 + (TATATG)n Simple_repeat Simple_repeat 1 107 0 239 228 22 65 chrX 496989 497081 -162102849 - L1MC4 LINE L1 -1340 6702 6615 258 300 0 0 chrX 497083 497153 -162102777 + (TA)n Simple_repeat Simple_repeat 1 70 0 272 226 145 70 chrX 497254 497440 -162102490 - L2 LINE L2 -17 3296 3097 1700 204 14 47 chrX 497479 497906 -162102024 + L1M4 LINE L1 5377 5789 -389 310 278 41 0 chrX 498515 498612 -162101318 + MER34C LTR ERV1 1 101 -484 319 198 33 22 chrX 498708 498799 -162101131 - MER90 LTR ERV1 -477 98 7 742 245 58 5 chrX 499334 499542 -162100388 - MLT1D LTR MaLR -286 219 1 198 318 37 28 chrX 500313 500420 -162099510 + L2 LINE L2 2930 3037 -235 192 77 0 0 chrX 500846 500872 -162099058 + (GA)n Simple_repeat Simple_repeat 1 26 0 2287 95 7 0 chrX 501954 502248 -162097682 + AluSg SINE Alu 1 296 -14 2125 109 6 40 chrX 502488 502809 -162097121 + AluSx SINE Alu 1 310 -2 331 328 85 17 chrX 502934 503288 -162096642 + L1ME4a LINE L1 5491 5868 -253 646 274 12 12 chrX 504059 504227 -162095703 - MER45A DNA AcHobo -3 175 8 2314 94 0 10 chrX 505035 505333 -162094597 - AluSg SINE Alu -15 295 1 22 70 0 0 chrX 505451 505494 -162094436 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chrX 505874 505897 -162094033 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 29 47 0 0 chrX 506700 506743 -162093187 + AT_rich Low_complexity Low_complexity 1 43 0 2198 90 3 21 chrX 506819 507143 -162092787 + AluSx SINE Alu 1 319 0 537 328 6 0 chrX 508005 508179 -162091751 - MER45A DNA AcHobo -3 175 1 254 132 19 0 chrX 508696 508749 -162091181 + GA-rich Low_complexity Low_complexity 1 54 0 1712 170 7 3 chrX 509226 509520 -162090410 - AluJb SINE Alu -17 295 1 268 321 101 26 chrX 510717 511063 -162088867 + L1ME LINE L1 5490 5861 -260 618 273 17 0 chrX 511842 512014 -162087916 - MER45A DNA AcHobo -3 175 1 2092 126 7 0 chrX 512813 513114 -162086816 - AluSp SINE Alu -10 303 1 25 0 0 0 chrX 513254 513279 -162086651 + GC_rich Low_complexity Low_complexity 1 25 0 2522 60 3 3 chrX 513732 514034 -162085896 + AluSp SINE Alu 1 302 -11 1652 178 3 30 chrX 514038 514341 -162085589 + AluJb SINE Alu 2 296 -16 3654 130 42 18 chrX 514961 515412 -162084518 + LTR9 LTR ERV1 1 471 -141 189 0 0 0 chrX 515412 515433 -162084497 + (TC)n Simple_repeat Simple_repeat 2 22 0 3654 130 42 18 chrX 515433 515579 -162084351 + LTR9 LTR ERV1 471 612 0 3852 61 15 81 chrX 515745 516337 -162083593 + MER41A LTR ERV1 2 554 0 2199 109 0 3 chrX 516830 517124 -162082806 + AluSx SINE Alu 16 308 -4 2478 126 37 0 chrX 517124 517506 -162082424 + L1PA11 LINE L1 5779 6174 0 1252 178 50 27 chrX 517521 517779 -162082151 + LTR49 LTR ERV1 98 361 -234 567 177 48 16 chrX 517800 517924 -162082006 - AluJb SINE Alu 0 312 185 22 0 0 0 chrX 517927 517949 -162081981 + AT_rich Low_complexity Low_complexity 1 22 0 280 229 0 0 chrX 517966 518027 -162081903 + AluS SINE Alu 5 65 -238 982 185 0 11 chrX 518390 518574 -162081356 - AluJb SINE Alu -120 192 11 2174 117 0 22 chrX 518603 518920 -162081010 - AluSx SINE Alu 0 312 3 377 198 25 0 chrX 519144 519225 -162080705 + MER3 DNA MER1_type 126 208 -1 1374 157 13 0 chrX 519263 519493 -162080437 - MLT1B LTR MaLR 0 390 158 2082 175 26 8 chrX 519493 519876 -162080054 - MLT1B LTR MaLR 0 390 1 246 62 0 0 chrX 520256 520288 -162079642 + (CG)n Simple_repeat Simple_repeat 2 33 0 * 276 30 0 0 chrX 520287 520320 -162079610 + (CA)n Simple_repeat Simple_repeat 1 33 0 2282 93 3 0 chrX 520423 520713 -162079217 - AluSc SINE Alu -10 299 9 2429 81 0 7 chrX 521413 521722 -162078208 - AluSc SINE Alu -2 307 1 2303 100 0 3 chrX 522394 522695 -162077235 + AluSx SINE Alu 1 300 -12 303 256 53 15 chrX 522695 522828 -162077102 - MER33 DNA MER1_type -19 305 168 42 77 0 0 chrX 522828 522919 -162077011 + AT_rich Low_complexity Low_complexity 1 91 0 267 284 11 17 chrX 522982 523158 -162076772 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 68 0 0 chrX 523177 523236 -162076694 + AT_rich Low_complexity Low_complexity 1 59 0 384 227 34 17 chrX 523263 523349 -162076581 + (TA)n Simple_repeat Simple_repeat 1 84 -95 2289 105 10 0 chrX 523349 523643 -162076287 + AluSp SINE Alu 1 297 -16 384 227 34 17 chrX 523643 523732 -162076198 + (TA)n Simple_repeat Simple_repeat 84 179 0 266 286 19 0 chrX 523760 523921 -162076009 + (TA)n Simple_repeat Simple_repeat 2 165 0 495 185 82 86 chrX 523974 524156 -162075774 - MER33 DNA MER1_type -2353 232 50 2277 187 9 12 chrX 524156 524583 -162075347 + MSTB LTR MaLR 1 426 0 495 185 82 86 chrX 524583 524632 -162075298 - MER33 DNA MER1_type -2535 50 2 2415 77 0 0 chrX 525021 525318 -162074612 + AluY SINE Alu 1 297 -14 625 161 100 0 chrX 525402 525532 -162074398 - L1MC3 LINE L1 -195 7590 7448 306 121 35 17 chrX 525559 525617 -162074313 - MSTB1 LTR MaLR -43 389 331 720 114 9 0 chrX 525711 525816 -162074114 - MSTB1 LTR MaLR 0 432 327 1551 180 200 130 chrX 525818 526073 -162073857 - L1MC3 LINE L1 -340 7445 7209 240 284 12 25 chrX 526073 526154 -162073776 - MLT1F1 LTR MaLR -453 114 35 1551 180 200 130 chrX 526154 526503 -162073427 - L1MC3 LINE L1 -576 7209 6713 1266 233 38 24 chrX 526537 526829 -162073101 + AluJo SINE Alu 1 296 -6 471 214 0 0 chrX 526832 526916 -162073014 + AluJo/FRAM SINE Alu 207 290 -22 243 88 0 0 chrX 528440 528474 -162071456 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2286 75 0 4 chrX 528474 528755 -162071175 - AluSx SINE Alu -32 280 1 2275 84 3 32 chrX 529180 529490 -162070440 - AluSx SINE Alu -7 305 5 1608 181 34 27 chrX 529737 529868 -162070062 + AluJb SINE Alu 6 135 -177 2255 117 0 0 chrX 529868 530175 -162069755 + AluSx SINE Alu 2 308 -4 1608 181 34 27 chrX 530175 530335 -162069595 + AluJb SINE Alu 135 299 -13 282 320 19 77 chrX 530581 530737 -162069193 + MIR SINE MIR 20 166 -96 2191 113 0 35 chrX 530782 531100 -162068830 + AluSx SINE Alu 1 307 -5 2604 86 23 16 chrX 531486 531872 -162068058 + MLT2A1 LTR ERVL 1 389 -55 192 77 0 0 chrX 531872 531898 -162068032 + (TA)n Simple_repeat Simple_repeat 1 26 0 1655 164 32 11 chrX 532268 532579 -162067351 - AluJo SINE Alu 0 317 1 2331 95 3 0 chrX 532794 533090 -162066840 + AluSx SINE Alu 1 297 -15 210 91 0 0 chrX 533106 533139 -162066791 + (CA)n Simple_repeat Simple_repeat 2 34 0 210 258 61 0 chrX 533650 533716 -162066214 - MIR SINE MIR -117 145 76 496 248 10 2 chrX 533848 534262 -162065668 + (TCCA)n Simple_repeat Simple_repeat 1 417 0 350 281 0 6 chrX 534286 534457 -162065473 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 182 266 78 0 chrX 534502 534566 -162065364 + L2 LINE L2 3242 3310 -3 586 227 8 0 chrX 535593 535721 -162064209 - AluJb SINE Alu -7 305 177 627 144 8 23 chrX 535748 535880 -162064050 + CT-rich Low_complexity Low_complexity 3 132 0 909 145 0 0 chrX 535882 536013 -162063917 - FLAM_C SINE Alu -2 131 1 322 287 53 0 chrX 536412 536506 -162063424 + MER5A DNA MER1_type 11 109 -80 2302 105 0 0 chrX 537590 537884 -162062046 + AluSp SINE Alu 2 295 -18 242 357 31 16 chrX 538179 538308 -162061622 - MIR SINE MIR -58 150 20 248 174 43 0 chrX 538361 538407 -162061523 + MLT1D LTR MaLR 1 48 -457 314 125 42 0 chrX 538410 538458 -162061472 + MLT1D LTR MaLR 1 50 -455 284 106 64 0 chrX 538459 538506 -162061424 + MLT1D LTR MaLR 1 50 -455 339 102 20 0 chrX 538507 538556 -162061374 + MLT1D LTR MaLR 1 50 -455 294 143 20 0 chrX 538557 538606 -162061324 + MLT1D LTR MaLR 1 50 -455 307 122 20 0 chrX 538607 538656 -162061274 + MLT1D LTR MaLR 1 50 -455 331 102 20 0 chrX 538657 538706 -162061224 + MLT1D LTR MaLR 1 50 -455 318 104 42 0 chrX 538707 538755 -162061175 + MLT1D LTR MaLR 1 50 -455 2006 203 26 39 chrX 538756 539264 -162060666 + MLT1D LTR MaLR 1 501 -4 2865 62 3 3 chrX 539290 539645 -162060285 + THE1A LTR MaLR 1 355 0 2950 115 2 5 chrX 539650 540092 -162059838 + MER41A LTR ERV1 1 441 -113 2332 85 3 0 chrX 540092 540386 -162059544 - AluSc SINE Alu -9 300 6 2234 119 0 10 chrX 540695 541007 -162058923 + AluSx SINE Alu 4 312 0 272 286 45 52 chrX 541309 541463 -162058467 - MER103 DNA DNA 0 166 14 1901 161 3 10 chrX 541755 542060 -162057870 - AluJb SINE Alu -9 303 1 1798 115 4 4 chrX 542195 542447 -162057483 + AluSq SINE Alu 1 252 -61 1109 271 47 11 chrX 542642 543003 -162056927 - MSTB LTR MaLR -52 374 1 1866 185 34 27 chrX 543208 543755 -162056175 - MLT2A2 LTR ERVL 0 554 1 3124 169 4 24 chrX 543807 544345 -162055585 - MER1A DNA MER1_type 0 527 1 509 313 6 6 chrX 544507 544670 -162055260 - MER63A DNA MER1_type -4 206 44 2064 136 0 0 chrX 545398 545734 -162054196 - AluSx SINE Alu 0 336 1 2249 92 3 7 chrX 545740 546045 -162053885 - AluSx SINE Alu -6 306 3 257 315 167 6 chrX 546330 546492 -162053438 + MARNA DNA Mariner 146 333 -253 2230 105 7 0 chrX 547682 547977 -162051953 - AluSx SINE Alu -12 300 4 825 122 32 0 chrX 547991 548114 -162051816 - FLAM_C SINE Alu -2 131 5 2102 141 0 3 chrX 548517 548821 -162051109 + AluSx SINE Alu 1 303 -9 288 0 0 0 chrX 549001 549033 -162050897 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 283 69 69 chrX 549109 549282 -162050648 + MIR SINE MIR 90 262 0 2388 100 0 3 chrX 549526 549837 -162050093 + AluSg SINE Alu 1 310 0 300 248 116 33 chrX 549997 550118 -162049812 + MIR SINE MIR 23 153 -55 56 61 0 0 chrX 552898 552996 -162046934 + GC_rich Low_complexity Low_complexity 1 98 0 342 283 103 68 chrX 553029 553457 -162046473 - L1M2 LINE L1 -5651 1198 756 192 97 0 0 chrX 553696 553727 -162046203 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 220 0 0 chrX 555044 555094 -162044836 + (TG)n Simple_repeat Simple_repeat 1 50 0 293 219 27 0 chrX 555498 555571 -162044359 + LTR52 LTR ERVL 1 75 -346 685 182 157 6 chrX 555626 555785 -162044145 + MSTA LTR MaLR 1 183 -245 702 237 22 73 chrX 555807 555881 -162044049 + LTR52 LTR ERVL 83 159 -262 2410 102 0 0 chrX 555881 556185 -162043745 + AluSx SINE Alu 1 304 -8 702 237 22 73 chrX 556185 556384 -162043546 + LTR52 LTR ERVL 159 342 -79 1626 189 20 14 chrX 556500 556797 -162043133 + AluJo SINE Alu 7 305 -7 2350 116 0 0 chrX 556859 557169 -162042761 - AluSx SINE Alu -2 310 1 2438 94 0 3 chrX 557580 557888 -162042042 - AluSq SINE Alu -6 307 1 1928 169 10 3 chrX 558367 558674 -162041256 - AluJb SINE Alu -3 309 1 2189 99 0 17 chrX 558750 559042 -162040888 - AluSg SINE Alu 0 310 24 1840 165 12 38 chrX 559179 559536 -162040394 + L1MA4 LINE L1 5896 6260 -40 1357 64 0 6 chrX 559536 559706 -162040224 + L1PA8 LINE L1 5987 6158 -14 261 83 0 0 chrX 559708 559744 -162040186 + (TA)n Simple_repeat Simple_repeat 2 37 0 1840 165 12 38 chrX 559744 559783 -162040147 + L1MA4 LINE L1 6261 6285 -15 3039 131 50 84 chrX 559784 559992 -162039938 + MER4A LTR ERV1 1 215 -385 2200 122 0 16 chrX 559992 560303 -162039627 + AluSq SINE Alu 4 309 -4 3039 131 50 84 chrX 560303 560711 -162039219 + MER4A LTR ERV1 215 596 -4 1277 168 112 56 chrX 561001 561269 -162038661 - AluJb SINE Alu -29 283 1 2021 112 0 69 chrX 561411 561737 -162038193 + AluSx SINE Alu 1 305 0 4936 91 1 24 chrX 561811 562268 -162037662 + PABL_B LTR ERV1 1 440 -227 2042 100 10 45 chrX 562268 562577 -162037353 - AluSx SINE Alu -14 298 1 4936 91 1 24 chrX 562577 562801 -162037129 + PABL_B LTR ERV1 440 667 0 2775 166 100 27 chrX 563137 563856 -162036074 + LTR1B LTR ERV1 1 754 -31 305 119 40 68 chrX 563903 563973 -162035957 + (TCTA)n Simple_repeat Simple_repeat 3 73 -101 2277 119 0 0 chrX 563973 564268 -162035662 + AluSg SINE Alu 2 296 -14 305 119 40 68 chrX 564268 564374 -162035556 + (TCTA)n Simple_repeat Simple_repeat 73 174 0 307 143 0 57 chrX 564383 564453 -162035477 + MLT2B1 LTR ERVL 455 520 0 2367 103 7 0 chrX 564657 564967 -162034963 + AluSq SINE Alu 1 312 -1 2201 125 3 3 chrX 565258 565569 -162034361 - AluSx SINE Alu -1 311 1 1543 177 7 35 chrX 565690 565811 -162034119 + AluJb SINE Alu 1 124 -188 1988 102 18 32 chrX 565811 566096 -162033834 - AluSx SINE Alu -9 303 23 1543 177 7 35 chrX 566096 566257 -162033673 + AluJb SINE Alu 124 275 -37 310 355 128 21 chrX 566283 566573 -162033357 + HAL1 LINE L1 981 1301 -1206 1635 165 4 0 chrX 567076 567331 -162032599 + AluJo SINE Alu 11 266 -46 1496 86 4 78 chrX 567463 567695 -162032235 + AluSg/x SINE Alu 84 298 -14 870 132 0 0 chrX 567697 567818 -162032112 - AluJo/FLAM SINE Alu -189 123 3 2353 99 0 0 chrX 567921 568225 -162031705 + AluSg SINE Alu 1 304 -6 838 237 8 42 chrX 568231 568467 -162031463 - L1MC3 LINE L1 -421 7364 7137 2022 135 4 0 chrX 568645 568962 -162030968 - AluSx SINE Alu 0 319 2 22 56 0 0 chrX 569100 569136 -162030794 + AT_rich Low_complexity Low_complexity 1 36 0 2276 145 0 0 chrX 569308 569619 -162030311 - AluSx SINE Alu 0 312 2 443 301 77 85 chrX 569652 570326 -162029604 + L1ME LINE L1 3 671 -5399 827 172 0 13 chrX 570521 570748 -162029182 + (ATG)n Simple_repeat Simple_repeat 1 224 0 1083 130 0 8 chrX 570767 571132 -162028798 + (ATG)n Simple_repeat Simple_repeat 1 361 0 2392 107 0 0 chrX 571347 571657 -162028273 + AluSx SINE Alu 1 310 -2 2011 131 37 67 chrX 572437 572759 -162027171 + THE1B LTR MaLR 1 313 -51 2059 124 0 3 chrX 572759 573078 -162026852 + AluSx SINE Alu 1 318 0 2011 131 37 67 chrX 573078 573128 -162026802 + THE1B LTR MaLR 313 363 -1 309 189 33 56 chrX 573165 573255 -162026675 - L1MB3 LINE L1 -5 6178 6091 354 295 108 39 chrX 573789 574176 -162025754 + LTR33 LTR ERVL 89 502 -19 1833 126 52 37 chrX 574284 574633 -162025297 - THE1B LTR MaLR -10 354 1 238 292 10 31 chrX 575419 575515 -162024415 - Charlie4 DNA MER1_type -1764 197 104 1886 164 0 3 chrX 575755 576041 -162023889 - AluSx SINE Alu -25 287 3 2416 87 0 13 chrX 576365 576677 -162023253 - AluSc SINE Alu -1 308 1 2155 94 0 11 chrX 576686 577013 -162022917 - AluSc SINE Alu 0 324 1 241 164 343 0 chrX 577218 577291 -162022639 + MER4A LTR ERV1 1 98 -566 1563 141 9 29 chrX 577291 577624 -162022306 + MER4A LTR ERV1 261 645 -19 645 201 113 2 chrX 577645 577864 -162022066 + L1MC3 LINE L1 7535 7993 -2 2218 125 6 3 chrX 577956 578267 -162021663 + AluSx SINE Alu 1 312 0 311 202 0 8 chrX 579001 579122 -162020808 + CT-rich Low_complexity Low_complexity 1 119 0 1688 183 0 14 chrX 579126 579410 -162020520 - AluJo SINE Alu -32 280 1 1974 157 27 76 chrX 579834 580130 -162019800 - MSTA LTR MaLR -4 424 156 2219 115 0 0 chrX 580130 580425 -162019505 + AluSq SINE Alu 1 295 -18 1974 157 27 76 chrX 580425 580574 -162019356 - MSTA LTR MaLR -272 156 1 2283 97 0 10 chrX 580619 580919 -162019011 - AluY SINE Alu -14 297 1 877 173 0 0 chrX 581251 581384 -162018546 + FLAM_C SINE Alu 1 133 0 365 39 0 19 chrX 581408 581460 -162018470 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 309 248 31 23 chrX 581462 581591 -162018339 + (TTTG)n Simple_repeat Simple_repeat 3 132 0 231 215 69 0 chrX 581519 581663 -162018267 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 1064 243 7 95 chrX 582230 582647 -162017283 - MLT1E2 LTR MaLR -136 490 137 2041 112 0 0 chrX 582647 582949 -162016981 + AluSx SINE Alu 14 315 0 1064 243 7 95 chrX 582949 583072 -162016858 - MLT1E2 LTR MaLR -489 137 5 2181 126 0 3 chrX 583746 584048 -162015882 + AluSx SINE Alu 1 301 -11 1017 154 0 0 chrX 585001 585150 -162014780 + AluJb SINE Alu 159 307 -5 249 57 0 0 chrX 585185 585220 -162014710 + (GA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chrX 585220 585256 -162014674 + (TG)n Simple_repeat Simple_repeat 2 37 0 1223 116 0 0 chrX 585552 585716 -162014214 + AluSg/x SINE Alu 135 298 -12 195 42 0 0 chrX 585825 585849 -162014081 + (CA)n Simple_repeat Simple_repeat 1 24 0 2177 104 10 3 chrX 585909 586208 -162013722 + AluSx SINE Alu 1 301 -11 2221 112 6 22 chrX 586386 586698 -162013232 + AluSq SINE Alu 1 307 -6 184 44 67 67 chrX 586705 586750 -162013180 + A-rich Low_complexity Low_complexity 2 46 0 3219 135 4 8 chrX 586952 587455 -162012475 - MER1A DNA MER1_type 0 529 29 1975 170 0 3 chrX 587712 588023 -162011907 - AluJo SINE Alu -2 310 1 584 66 0 0 chrX 588042 588118 -162011812 - Alu SINE Alu -5 305 230 1002 159 27 19 chrX 588119 588436 -162011494 + MLT2A2 LTR ERVL 229 447 -6 1198 207 30 30 chrX 588951 589250 -162010680 - MLT2D LTR ERVL 0 414 116 389 121 0 0 chrX 589251 589309 -162010621 + L1P4 LINE L1 5628 5685 -476 1887 109 0 12 chrX 589312 589559 -162010371 + AluSg SINE Alu 1 244 -66 1719 126 3 44 chrX 589623 589916 -162010014 - Tigger2a DNA MER2_type -153 281 1 307 194 97 32 chrX 589922 590015 -162009915 + L1MC4 LINE L1 6609 6707 -1335 1143 143 0 63 chrX 590546 590798 -162009132 + AluSq SINE Alu 60 295 -18 1586 129 40 66 chrX 590802 590939 -162008991 - THE1B LTR MaLR -69 295 156 2266 97 3 3 chrX 590939 591263 -162008667 + AluSq SINE Alu 2 313 0 1586 129 40 66 chrX 591263 591428 -162008502 - THE1B LTR MaLR -208 156 1 482 217 17 26 chrX 591430 591545 -162008385 + MLT1E2 LTR MaLR 495 608 -18 182 206 29 0 chrX 592037 592071 -162007859 + MIR SINE MIR 118 152 -56 2296 92 3 7 chrX 592088 592383 -162007547 - AluSp SINE Alu -17 296 3 32 0 0 0 chrX 592393 592425 -162007505 + AT_rich Low_complexity Low_complexity 1 32 0 694 181 9 0 chrX 592425 592541 -162007389 - FLAM_C SINE Alu -25 118 2 218 200 40 0 chrX 592665 592715 -162007215 + MIR SINE MIR 101 152 -56 1894 215 65 45 chrX 593202 593320 -162006610 - MER41D LTR ERV1 -11 546 432 2247 136 0 0 chrX 593320 593630 -162006300 + AluSx SINE Alu 2 311 -1 1894 215 65 45 chrX 593630 594046 -162005884 - MER41D LTR ERV1 -125 432 1 27 83 0 28 chrX 595808 595917 -162004013 + GC_rich Low_complexity Low_complexity 1 106 0 363 125 18 0 chrX 596163 596219 -162003711 - AluS SINE Alu -251 57 1 2168 104 11 0 chrX 596482 596769 -162003161 + AluSq SINE Alu 1 290 -23 261 0 0 0 chrX 597001 597030 -162002900 + (T)n Simple_repeat Simple_repeat 1 29 0 1909 127 9 72 chrX 597142 597284 -162002646 + AluJb SINE Alu 1 150 -162 2108 135 6 6 chrX 597284 597596 -162002334 + AluSx SINE Alu 1 312 0 1909 127 9 72 chrX 597596 597785 -162002145 + AluJb SINE Alu 150 311 -1 2251 91 0 10 chrX 597861 598159 -162001771 + AluSx SINE Alu 1 295 -17 741 161 8 16 chrX 598243 598367 -162001563 + AluJo SINE Alu 15 137 -175 1565 197 4 14 chrX 598369 598648 -162001282 + AluJo SINE Alu 5 280 -32 366 80 0 0 chrX 598650 598700 -162001230 + (TAA)n Simple_repeat Simple_repeat 1 50 0 230 75 0 25 chrX 598701 598741 -162001189 + MADE1 DNA Mariner 5 43 -37 2412 97 0 0 chrX 598939 599249 -162000681 - AluSg SINE Alu 0 310 1 1800 178 0 3 chrX 599358 599680 -162000250 - AluJo SINE Alu 0 321 1 1244 211 42 131 chrX 599694 600295 -161999635 - L1MD2 LINE L1 0 6359 5813 294 287 49 16 chrX 600345 600467 -161999463 - L1MD2 LINE L1 -2083 5725 5600 1783 161 3 20 chrX 600470 600775 -161999155 - AluJo SINE Alu -12 300 1 324 299 125 7 chrX 600902 601046 -161998884 - L1MD2 LINE L1 -2329 5479 5319 2492 54 0 14 chrX 601084 601380 -161998550 + AluY SINE Alu 1 292 -19 2750 96 13 0 chrX 601390 601767 -161998163 + L1PA8 LINE L1 5787 6168 -4 626 297 138 47 chrX 601767 602012 -161997918 - L1MC/D LINE L1 -770 5376 5155 1587 163 36 33 chrX 602012 602318 -161997612 - AluJo SINE Alu -5 307 1 626 297 138 47 chrX 602318 602890 -161997040 - L1MC/D LINE L1 -991 5155 4549 26 0 0 0 chrX 602932 602958 -161996972 + AT_rich Low_complexity Low_complexity 1 26 0 2295 82 0 10 chrX 602958 603251 -161996679 - AluSg SINE Alu -20 290 1 2167 161 21 0 chrX 603251 603629 -161996301 - L1PA16 LINE L1 -11 6155 5770 1000 139 6 6 chrX 603636 603801 -161996129 + L1PA16 LINE L1 5608 5772 -394 2660 55 0 0 chrX 603809 604118 -161995812 - AluY SINE Alu -2 309 1 1825 155 7 39 chrX 604121 604431 -161995499 - AluJb SINE Alu -12 300 1 363 272 43 27 chrX 604433 604617 -161995313 - LTR16B LTR ERVL -8 456 270 472 145 0 0 chrX 604887 604963 -161994967 - AluJ/FRAM SINE Alu -14 298 223 638 327 53 56 chrX 605064 605424 -161994506 - L1MC/D LINE L1 -1675 4471 4111 1685 157 3 28 chrX 605424 605710 -161994220 + AluJo SINE Alu 18 296 -16 638 327 53 56 chrX 605710 605817 -161994113 - L1MC/D LINE L1 -2035 4111 4005 219 170 0 0 chrX 605822 605869 -161994061 + (CA)n Simple_repeat Simple_repeat 2 48 0 341 96 0 82 chrX 606244 606317 -161993613 - MLT1A1 LTR MaLR -276 89 23 4032 52 4 4 chrX 606378 606878 -161993052 - L1PA7 LINE L1 -1 6153 5654 2171 197 5 2 chrX 606896 607312 -161992618 - L1PB4 LINE L1 -2 6154 5738 1040 177 8 6 chrX 608296 608571 -161991359 + GA-rich Low_complexity Low_complexity 1 457 -76 1040 128 6 0 chrX 608571 608750 -161991180 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1040 177 8 6 chrX 608750 608828 -161991102 + GA-rich Low_complexity Low_complexity 457 533 0 2414 221 55 2 chrX 608946 609475 -161990455 + MER74A LTR ERVL 1 557 -1 2021 150 0 13 chrX 609990 610303 -161989627 - AluSx SINE Alu -2 310 2 650 222 7 22 chrX 610544 610821 -161989109 - MLT1B LTR MaLR -2 465 170 1856 161 53 9 chrX 610825 611199 -161988731 - MLT1B LTR MaLR 0 396 1 823 192 7 7 chrX 611564 611710 -161988220 - FRAM SINE Alu -16 150 5 1142 139 6 0 chrX 611718 611891 -161988039 - AluSg/x SINE Alu 0 310 137 217 321 0 29 chrX 612946 613083 -161986847 + (TTAGG)n Simple_repeat Simple_repeat 3 135 0 206 264 0 35 chrX 613191 613278 -161986652 + (TTAAG)n Simple_repeat Simple_repeat 4 87 0 * 209 248 57 19 chrX 613218 613323 -161986607 + (AGTTG)n Simple_repeat Simple_repeat 1 109 0 276 314 0 31 chrX 613568 613727 -161986203 + (TTAGG)n Simple_repeat Simple_repeat 2 155 0 2825 176 16 69 chrX 613921 614274 -161985656 - L1MA8 LINE L1 -3 6288 5993 2442 104 0 0 chrX 614274 614583 -161985347 - AluSc SINE Alu 0 309 1 2825 176 16 69 chrX 614583 614971 -161984959 - L1MA8 LINE L1 -298 5993 5586 849 142 0 0 chrX 615114 615234 -161984696 + AluSq/x SINE Alu 1 120 -192 1098 133 0 0 chrX 615732 615920 -161984010 - AluSg/x SINE Alu 0 319 132 2132 114 0 41 chrX 615921 616236 -161983694 - AluSg SINE Alu -8 302 1 2055 116 3 7 chrX 617467 617783 -161982147 + AluSx SINE Alu 1 315 0 2018 96 0 3 chrX 617941 618223 -161981707 + L1PA7 LINE L1 5874 6154 0 1694 91 0 0 chrX 619124 619333 -161980597 + AluSg SINE Alu 1 209 -101 277 102 0 0 chrX 619335 619384 -161980546 + AluSg SINE Alu 252 300 0 21 0 0 0 chrX 619537 619558 -161980372 + AT_rich Low_complexity Low_complexity 1 21 0 3306 190 9 31 chrX 619558 619796 -161980134 - L1PB4 LINE L1 -1 6155 5913 2352 203 54 30 chrX 619796 620293 -161979637 + LTR22 LTR ERVK 1 509 0 3306 190 9 31 chrX 620293 620733 -161979197 - L1PB4 LINE L1 -243 5913 5492 2155 101 24 0 chrX 620763 621051 -161978879 + AluSq SINE Alu 7 301 -12 2177 105 0 10 chrX 621061 621355 -161978575 + AluSx SINE Alu 7 297 -15 2400 95 0 0 chrX 621931 622227 -161977703 + AluSg SINE Alu 1 296 -14 389 291 10 10 chrX 622227 622330 -161977600 - MLT1E LTR MaLR -489 104 2 2051 133 3 3 chrX 622569 622869 -161977061 - AluSx SINE Alu -12 300 1 467 315 12 6 chrX 624271 624436 -161975494 - MLT1G1 LTR MaLR -207 388 223 2361 104 3 0 chrX 624584 624892 -161975038 - AluSp SINE Alu 0 313 5 2526 133 23 14 chrX 624903 625333 -161974597 + MER57B LTR ERV1 1 434 0 491 316 63 36 chrX 625359 625383 -161974547 + L1ME LINE L1 1325 1347 -5256 2307 119 3 0 chrX 625383 625695 -161974235 + AluSp SINE Alu 1 313 0 491 316 63 36 chrX 625695 625977 -161973953 + L1ME LINE L1 1347 1617 -4986 5595 54 1 0 chrX 626323 627007 -161972923 - L1PA7 LINE L1 -1 6153 5469 1007 225 76 31 chrX 627852 628174 -161971756 + MLT1A1 LTR MaLR 23 410 -18 339 156 0 16 chrX 628213 628277 -161971653 + MLT1A1 LTR MaLR 294 356 -9 443 252 25 69 chrX 628280 628439 -161971491 - MLT1G1 LTR MaLR -314 153 2 2075 137 0 0 chrX 628467 628766 -161971164 + AluSx SINE Alu 1 299 -13 236 308 0 0 chrX 628766 628831 -161971099 - L2 LINE L2 -18 3295 3231 204 267 0 0 chrX 628866 628926 -161971004 + (TG)n Simple_repeat Simple_repeat 1 60 0 1991 141 0 33 chrX 628975 629274 -161970656 - AluJo SINE Alu -23 289 1 2282 108 3 0 chrX 629345 629641 -161970289 - AluSx SINE Alu -15 297 1 2346 103 0 10 chrX 629978 630280 -161969650 - AluSg SINE Alu -11 299 1 1844 162 8 22 chrX 630421 630764 -161969166 - L1PA16 LINE L1 0 6166 5827 2160 131 3 3 chrX 630764 631070 -161968860 - AluSc SINE Alu -3 306 1 1844 162 8 22 chrX 631070 631084 -161968846 - L1PA16 LINE L1 -339 5827 5814 1023 110 35 0 chrX 631084 631229 -161968701 - AluSp SINE Alu -30 283 134 1276 146 26 18 chrX 631229 631455 -161968475 - AluSg/x SINE Alu 0 312 85 591 104 0 0 chrX 631455 631532 -161968398 - AluSg/x SINE Alu -62 250 174 1203 83 0 0 chrX 631655 631800 -161968130 - AluSg SINE Alu -165 145 1 230 67 0 0 chrX 631815 631845 -161968085 - L1M LINE L1 -771 5397 5368 23 0 0 0 chrX 631889 631912 -161968018 + AT_rich Low_complexity Low_complexity 1 23 0 1740 178 30 0 chrX 631990 632288 -161967642 - AluJb SINE Alu -5 307 1 2253 88 0 3 chrX 632320 632605 -161967325 - AluSg SINE Alu -26 284 1 2539 185 15 2 chrX 632928 633409 -161966521 - LTR15 LTR ERV1 -6 487 1 432 333 46 35 chrX 633492 633666 -161966264 + MER5A DNA MER1_type 1 176 -13 2345 100 3 3 chrX 633937 634238 -161965692 - AluSq SINE Alu -12 301 1 1705 118 30 43 chrX 634480 634631 -161965299 + L1MA3 LINE L1 5988 6135 -170 2313 103 17 0 chrX 634631 634932 -161964998 + AluSx SINE Alu 2 307 -5 1705 118 30 43 chrX 634932 635084 -161964846 + L1MA3 LINE L1 6135 6287 -18 23 0 0 0 chrX 636050 636073 -161963857 + AT_rich Low_complexity Low_complexity 1 23 0 1330 164 9 0 chrX 636119 636332 -161963598 - AluJo SINE Alu -94 218 4 1232 203 114 7 chrX 636339 636610 -161963320 - AluJo SINE Alu -2 300 1 548 282 96 47 chrX 636619 637005 -161962925 - Charlie1b DNA MER1_type -115 408 4 467 193 47 94 chrX 638673 638688 -161961242 - Charlie1 DNA MER1_type 0 2761 2747 2172 104 10 0 chrX 638688 638985 -161960945 - AluSp SINE Alu -13 300 1 467 193 47 94 chrX 638985 639182 -161960748 - Charlie1 DNA MER1_type -14 2747 2559 62 52 0 0 chrX 639186 639283 -161960647 + AT_rich Low_complexity Low_complexity 1 97 0 837 137 75 176 chrX 639304 639457 -161960473 - L1MA7 LINE L1 -3 6288 6121 868 100 0 0 chrX 639457 639577 -161960353 - L1PB1 LINE L1 -1 6150 6031 837 137 75 176 chrX 639577 639600 -161960330 - L1MA7 LINE L1 -170 6121 6097 2218 125 3 3 chrX 639600 639912 -161960018 + AluSx SINE Alu 1 312 0 837 137 75 176 chrX 639912 640040 -161959890 - L1MA7 LINE L1 -194 6097 6014 485 275 23 41 chrX 640048 640266 -161959664 - Charlie1 DNA MER1_type -197 2564 2351 198 71 0 0 chrX 640718 640746 -161959184 + (TAA)n Simple_repeat Simple_repeat 2 29 0 231 146 0 0 chrX 640789 640830 -161959100 + (TAA)n Simple_repeat Simple_repeat 2 42 0 198 71 0 0 chrX 640872 640900 -161959030 + (TAA)n Simple_repeat Simple_repeat 2 29 0 279 79 0 0 chrX 640945 640983 -161958947 + (TAA)n Simple_repeat Simple_repeat 1 38 0 216 97 0 0 chrX 641026 641057 -161958873 + (TAA)n Simple_repeat Simple_repeat 2 32 0 215 158 0 0 chrX 641102 641140 -161958790 + (TAA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 641366 641394 -161958536 + AT_rich Low_complexity Low_complexity 1 28 0 2233 110 3 10 chrX 641654 641962 -161957968 - AluSq SINE Alu -5 308 3 203 184 0 0 chrX 642009 642047 -161957883 + (TAA)n Simple_repeat Simple_repeat 1 38 0 201 39 0 0 chrX 642092 642118 -161957812 + (TAA)n Simple_repeat Simple_repeat 3 28 0 285 29 0 0 chrX 642163 642197 -161957733 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1036 247 136 19 chrX 642767 643200 -161956730 - MLT1D LTR MaLR -19 486 3 612 231 87 63 chrX 643212 643498 -161956432 - MLT1C LTR MaLR -122 345 53 2491 86 0 0 chrX 644282 644585 -161955345 + AluSx SINE Alu 1 303 -9 2080 97 31 3 chrX 647177 647466 -161952464 + AluSx SINE Alu 1 297 -15 1701 107 4 27 chrX 648022 648283 -161951647 + AluSx SINE Alu 42 296 -16 21 0 0 0 chrX 649306 649327 -161950603 + AT_rich Low_complexity Low_complexity 1 21 0 300 283 0 35 chrX 649587 649700 -161950230 + CT-rich Low_complexity Low_complexity 3 111 0 729 115 0 68 chrX 649710 649902 -161950028 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 865 141 0 22 chrX 649939 650123 -161949807 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chrX 650444 650471 -161949459 + AT_rich Low_complexity Low_complexity 1 27 0 303 267 0 30 chrX 650488 650589 -161949341 + G-rich Low_complexity Low_complexity 2 99 0 423 185 8 25 chrX 650597 650716 -161949214 + CT-rich Low_complexity Low_complexity 2 118 0 379 235 10 20 chrX 651814 651912 -161948018 - MER58B DNA MER1_type -20 321 225 2145 94 11 0 chrX 651913 652189 -161947741 + AluSq SINE Alu 2 280 -33 230 191 24 71 chrX 652215 652299 -161947631 - MER58B DNA MER1_type -183 158 79 180 0 0 0 chrX 652375 652395 -161947535 + (T)n Simple_repeat Simple_repeat 1 20 0 1755 151 0 31 chrX 652614 652933 -161946997 + AluJo SINE Alu 1 310 0 911 207 0 0 chrX 652933 653097 -161946833 + AluJb SINE Alu 135 298 -14 1490 176 22 38 chrX 653620 653756 -161946174 + AluJo SINE Alu 1 138 -174 1749 184 3 7 chrX 653756 654055 -161945875 + AluJo SINE Alu 1 298 -14 1490 176 22 38 chrX 654055 654231 -161945699 + AluJo SINE Alu 138 308 -4 2238 106 7 0 chrX 654508 654801 -161945129 - AluSq SINE Alu -18 295 1 419 206 0 20 chrX 654981 655083 -161944847 - L1MA7 LINE L1 -8 6283 6184 2081 207 43 62 chrX 655193 655357 -161944573 - L1MA8 LINE L1 -107 6184 6018 1715 175 14 7 chrX 655357 655649 -161944281 - AluJo SINE Alu -18 294 1 744 196 0 0 chrX 655652 655785 -161944145 - AluJo/FLAM SINE Alu -169 133 1 2081 207 43 62 chrX 655785 656192 -161943738 - L1MA8 LINE L1 -275 6016 5620 2124 119 3 26 chrX 658309 658620 -161941310 - AluSx SINE Alu -8 304 1 5148 24 0 0 chrX 659378 659962 -161939968 - L1PA4 LINE L1 -7 6148 5565 1127 206 58 21 chrX 659962 660253 -161939677 - MLT1A1 LTR MaLR -54 311 10 209 301 23 40 chrX 661714 661890 -161938040 + (CAGGT)n Simple_repeat Simple_repeat 4 176 0 33 0 0 0 chrX 662470 662503 -161937427 + AT_rich Low_complexity Low_complexity 1 33 0 551 260 83 0 chrX 662703 662884 -161937046 - MER58A DNA MER1_type -2 222 27 285 324 0 32 chrX 663597 663782 -161936148 + (TTAGG)n Simple_repeat Simple_repeat 2 180 0 1646 201 25 88 chrX 664038 664132 -161935798 - L1MA8 LINE L1 -184 6107 6009 1573 192 7 0 chrX 664132 664413 -161935517 - AluJo SINE Alu -19 293 11 1646 201 25 88 chrX 664413 664433 -161935497 - L1MA8 LINE L1 -282 6009 5989 698 204 0 0 chrX 664433 664565 -161935365 - FLAM_C SINE Alu -1 132 1 1646 201 25 88 chrX 664565 664970 -161934960 - L1MA8 LINE L1 -302 5989 5620 2280 107 0 0 chrX 666649 666949 -161932981 - AluSx SINE Alu -12 300 1 2026 138 23 0 chrX 667510 667815 -161932115 - AluSq SINE Alu -1 312 1 2218 151 10 29 chrX 667818 668155 -161931775 - L1PA15 LINE L1 -6 6159 5830 2200 115 3 0 chrX 668155 668450 -161931480 - AluSp SINE Alu -17 296 1 2218 151 10 29 chrX 668450 668522 -161931408 - L1PA15 LINE L1 -335 5830 5758 2295 101 0 0 chrX 668740 669036 -161930894 - AluSq SINE Alu -17 296 1 529 168 0 0 chrX 669220 669327 -161930603 - L1MA7 LINE L1 -1 6290 6184 1381 194 97 119 chrX 669398 669608 -161930322 - L1MA7 LINE L1 -88 6203 5990 1588 190 14 0 chrX 669608 669892 -161930038 - AluJo SINE Alu -24 288 1 739 203 0 0 chrX 669897 670030 -161929900 - FLAM_C SINE Alu 0 133 1 1381 194 97 119 chrX 670030 670410 -161929520 - L1MA7 LINE L1 -305 5986 5620 988 106 0 0 chrX 672032 672164 -161927766 - AluSg/x SINE Alu -11 299 168 1551 202 57 9 chrX 672165 672496 -161927434 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 672540 672568 -161927362 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 672809 672945 -161926985 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 673111 673133 -161926797 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 673351 673621 -161926309 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 673621 673777 -161926153 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 674079 674377 -161925553 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 674563 674667 -161925263 - L1MA7 LINE L1 -3 6288 6184 547 187 92 19 chrX 674742 674921 -161925009 - L1MA7 LINE L1 -91 6209 6032 1685 181 24 0 chrX 674940 675228 -161924702 - AluJo SINE Alu -17 295 1 703 221 0 0 chrX 675230 675370 -161924560 - FLAM_C SINE Alu -2 141 2 1754 218 50 0 chrX 675371 675774 -161924156 - L1MA8 LINE L1 -249 6042 5620 236 177 0 48 chrX 677741 677803 -161922127 - MLT1A1 LTR MaLR -306 59 1 2365 92 0 0 chrX 678114 678409 -161921521 - AluSq SINE Alu -18 295 1 1604 174 3 34 chrX 678413 678735 -161921195 - AluJo SINE Alu 0 312 1 2621 50 3 0 chrX 679256 679559 -161920371 - AluY SINE Alu -7 304 1 1900 126 4 0 chrX 680062 680325 -161919605 - AluSx SINE Alu -48 264 1 192 40 0 0 chrX 680859 680884 -161919046 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1994 125 11 4 chrX 680886 681167 -161918763 - AluSp SINE Alu -30 283 1 403 157 0 0 chrX 681168 681238 -161918692 - L1PA13 LINE L1 -335 5828 5759 1988 146 0 31 chrX 681462 681783 -161918147 - AluSq SINE Alu -2 311 1 2162 113 3 26 chrX 684236 684546 -161915384 - AluSx SINE Alu -8 304 2 1777 172 27 0 chrX 685098 685395 -161914535 - AluSq SINE Alu -8 305 1 2193 158 20 27 chrX 685398 685729 -161914201 - L1PA15 LINE L1 -7 6158 5829 2129 125 10 0 chrX 685729 686025 -161913905 - AluSp SINE Alu -14 299 1 2193 158 20 27 chrX 686025 686097 -161913833 - L1PA15 LINE L1 -336 5829 5758 2041 118 24 0 chrX 686311 686600 -161913330 - AluSq SINE Alu -17 296 1 436 187 7 72 chrX 686784 686923 -161913007 - L1MA7 LINE L1 -1 6290 6161 1818 200 43 86 chrX 686962 687179 -161912751 - L1MA9 LINE L1 -97 6215 5990 1665 171 15 0 chrX 687179 687453 -161912477 - AluJo SINE Alu -24 288 11 1818 200 43 86 chrX 687453 687476 -161912454 - L1MA9 LINE L1 -322 5990 5968 677 207 0 15 chrX 687476 687611 -161912319 - FLAM_C SINE Alu 0 133 1 1818 200 43 86 chrX 687611 688010 -161911920 - L1MA9 LINE L1 -344 5968 5620 2069 108 49 7 chrX 689908 690196 -161909734 - AluSx SINE Alu -12 300 1 1878 150 24 0 chrX 690806 691099 -161908831 - AluSq SINE Alu -13 300 1 2103 151 40 33 chrX 691102 691427 -161908503 - L1PA15 LINE L1 -7 6158 5828 2085 141 3 0 chrX 691427 691732 -161908198 - AluSp SINE Alu -7 306 1 2103 151 40 33 chrX 691732 691804 -161908126 - L1PA15 LINE L1 -337 5828 5758 1943 148 3 22 chrX 692050 692368 -161907562 - AluSq SINE Alu -1 312 1 875 115 0 8 chrX 694557 694687 -161905243 - AluSg/x SINE Alu -14 296 168 1589 217 23 9 chrX 694688 695033 -161904897 - MLT1A1 LTR MaLR -15 350 1 1108 88 0 0 chrX 695340 695477 -161904453 - AluSp/q SINE Alu -17 296 160 229 180 22 67 chrX 695477 695566 -161904364 - MER58 DNA MER1_type -183 158 74 207 167 0 0 chrX 695662 695704 -161904226 + T-rich Low_complexity Low_complexity 1 42 0 1511 146 89 14 chrX 695899 696180 -161903750 + AluJo SINE Alu 1 302 -10 808 220 0 24 chrX 696180 696348 -161903582 + AluJb SINE Alu 134 297 -15 1561 168 16 38 chrX 696868 697006 -161902924 + AluJo SINE Alu 1 141 -171 1763 183 3 7 chrX 697006 697306 -161902624 + AluJb SINE Alu 1 299 -13 1561 168 16 38 chrX 697306 697482 -161902448 + AluJo SINE Alu 141 308 -4 2192 99 0 0 chrX 697758 698064 -161901866 - AluSq SINE Alu 0 306 1 332 94 19 0 chrX 698286 698339 -161901591 + (TA)n Simple_repeat Simple_repeat 1 54 0 364 182 0 0 chrX 698375 698441 -161901489 - L1MA7 LINE L1 -42 6249 6184 1836 201 39 79 chrX 698572 698741 -161901189 - L1MA8 LINE L1 -100 6191 6017 1573 192 7 0 chrX 698741 699022 -161900908 - AluJo SINE Alu -19 293 11 1836 201 39 79 chrX 699022 699042 -161900888 - L1MA8 LINE L1 -274 6017 5998 698 204 0 0 chrX 699042 699174 -161900756 - FLAM_C SINE Alu -1 132 1 1836 201 39 79 chrX 699174 699579 -161900351 - L1MA8 LINE L1 -293 5998 5620 988 106 0 0 chrX 700452 700584 -161899346 - AluSg/x SINE Alu -11 301 170 1551 202 57 9 chrX 700585 700916 -161899014 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 700960 700988 -161898942 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 701229 701365 -161898565 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 701531 701553 -161898377 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 701771 702041 -161897889 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 702041 702197 -161897733 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 702498 702796 -161897134 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 702982 703086 -161896844 - L1MA7 LINE L1 -3 6288 6184 1918 193 52 64 chrX 703195 703359 -161896571 - L1MA8 LINE L1 -100 6191 6027 1685 181 24 0 chrX 703359 703647 -161896283 - AluJo SINE Alu -17 295 1 684 226 0 0 chrX 703657 703790 -161896140 - FLAM_C SINE Alu 0 133 1 1918 193 52 64 chrX 703790 704193 -161895737 - L1MA8 LINE L1 -273 6018 5620 941 55 0 0 chrX 704631 704740 -161895190 - AluSq/x SINE Alu -203 109 1 1311 178 12 42 chrX 704742 705001 -161894929 + MLT1A1 LTR MaLR 31 318 -78 1694 95 5 0 chrX 705001 705223 -161894707 + AluSp SINE Alu 87 309 -4 207 0 0 0 chrX 705372 705395 -161894535 + (A)n Simple_repeat Simple_repeat 1 23 0 258 237 0 0 chrX 706005 706081 -161893849 + (CAT)n Simple_repeat Simple_repeat 2 77 0 1678 181 7 17 chrX 706898 707196 -161892734 + AluJb SINE Alu 1 295 -17 1041 76 0 7 chrX 707376 707520 -161892410 - L1PA8 LINE L1 -341 5831 5689 1665 196 20 38 chrX 707531 707929 -161892001 - L1MB1 LINE L1 -1 6167 5777 2164 109 0 16 chrX 707929 708232 -161891698 - AluSx SINE Alu -14 298 1 2382 64 24 3 chrX 708239 708536 -161891394 - AluY SINE Alu -8 303 1 2071 110 23 17 chrX 708589 708889 -161891041 - AluSx SINE Alu -10 302 1 233 139 23 0 chrX 708895 708938 -161890992 - L1M2 LINE L1 -467 5824 5781 1849 129 0 0 chrX 709038 709293 -161890637 - AluSx SINE Alu -54 258 4 1703 118 22 4 chrX 709304 709576 -161890354 + L1PB1 LINE L1 5867 6143 -8 1189 144 0 42 chrX 709616 709831 -161890099 - Tigger2a DNA MER2_type -228 206 1 977 248 44 50 chrX 709832 710175 -161889755 - MLT1A2 LTR MaLR -33 341 1 1549 109 0 0 chrX 710967 711168 -161888762 + AluSq SINE Alu 1 201 -112 947 55 87 0 chrX 711288 711415 -161888515 - MER85 DNA T2_type 0 139 2 566 233 10 79 chrX 711430 711553 -161888377 - MER4C LTR ERV1 -2 463 333 2418 81 0 0 chrX 711553 711851 -161888079 - AluSx SINE Alu -14 298 1 2211 111 3 3 chrX 711851 712156 -161887774 - AluSx SINE Alu -6 306 1 566 233 10 79 chrX 712156 712233 -161887697 - MER4C LTR ERV1 -130 335 276 897 148 7 187 chrX 712241 712600 -161887330 - MER4A LTR ERV1 -177 522 139 1658 129 53 76 chrX 712667 712969 -161886961 + AluJb SINE Alu 1 295 -17 3307 129 8 2 chrX 713008 713526 -161886404 + MER41B LTR ERV1 113 633 -2 1694 127 8 0 chrX 713654 713891 -161886039 + AluSq SINE Alu 62 300 -13 2069 131 3 0 chrX 713901 714198 -161885732 + AluSx SINE Alu 1 298 -14 1861 162 17 67 chrX 714387 714769 -161885161 + Tigger2a DNA MER2_type 2 365 -2343 2238 127 0 0 chrX 714769 715068 -161884862 + AluSq SINE Alu 1 299 -14 1861 162 17 67 chrX 715068 715087 -161884843 + Tigger2a DNA MER2_type 365 383 -51 697 189 6 6 chrX 715192 715372 -161884558 + (CAT)n Simple_repeat Simple_repeat 1 180 0 806 192 6 0 chrX 715389 715717 -161884213 + (CAT)n Simple_repeat Simple_repeat 1 330 0 231 354 98 32 chrX 716137 716422 -161883508 - L2 LINE L2 -616 2698 2395 1346 66 11 0 chrX 716852 717035 -161882895 + L1PA2 LINE L1 5932 6116 -39 2175 158 71 76 chrX 718003 718231 -161881699 + LTR39 LTR ERV1 1 229 -554 2857 56 26 3 chrX 718231 718608 -161881322 + L1PA7 LINE L1 5767 6152 -2 2175 158 71 76 chrX 718608 718891 -161881039 + LTR39 LTR ERV1 229 511 -272 2278 99 0 17 chrX 718891 719193 -161880737 - AluSq SINE Alu -16 297 1 2175 158 71 76 chrX 719193 719243 -161880687 + LTR39 LTR ERV1 511 560 -223 741 121 17 0 chrX 719343 719459 -161880471 + MLT2A1 LTR ERVL 327 444 0 492 284 138 53 chrX 719644 719926 -161880004 + L1M4 LINE L1 2922 3227 -2919 2232 103 4 0 chrX 720248 720529 -161879401 + AluSx SINE Alu 1 282 -30 200 91 0 30 chrX 720529 720562 -161879368 + (TC)n Simple_repeat Simple_repeat 1 32 0 324 0 0 0 chrX 720569 720605 -161879325 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 677 273 19 19 chrX 720657 720866 -161879064 + MER58A DNA MER1_type 1 209 -15 244 321 176 0 chrX 721223 721388 -161878542 + MER117 DNA MER1_type 4 197 0 240 111 0 0 chrX 721539 721575 -161878355 + (ATG)n Simple_repeat Simple_repeat 1 36 0 372 94 0 0 chrX 721604 721657 -161878273 + (CA)n Simple_repeat Simple_repeat 2 54 0 933 91 0 8 chrX 721663 721784 -161878146 - AluSc SINE Alu -27 282 163 1068 96 0 0 chrX 721884 722019 -161877911 - AluSq SINE Alu -54 259 125 188 365 0 21 chrX 722069 722165 -161877765 - MIR SINE MIR -140 122 29 1473 224 0 20 chrX 722407 722702 -161877228 + AluJo SINE Alu 1 289 -23 264 77 0 0 chrX 722790 722829 -161877101 + LTR9 LTR ERV1 1 39 -573 1096 170 0 6 chrX 722829 723000 -161876930 + AluJb SINE Alu 129 298 -14 526 31 0 0 chrX 723618 723683 -161876247 + LTR9 LTR ERV1 1 65 -547 1507 95 22 56 chrX 723683 723915 -161876015 - AluSg/x SINE Alu -1 309 86 704 207 0 0 chrX 724844 724960 -161874970 - FLAM_A SINE Alu -17 116 1 778 129 57 0 chrX 725056 725180 -161874750 + AluJo SINE Alu 14 144 -168 2405 106 0 0 chrX 725183 725495 -161874435 + AluSp SINE Alu 1 312 -1 1708 167 14 3 chrX 725529 725822 -161874108 + AluJo SINE Alu 14 309 -3 399 41 0 0 chrX 726326 726375 -161873555 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 2131 122 0 22 chrX 726934 727253 -161872677 - AluSx SINE Alu 0 312 1 1044 101 14 0 chrX 727253 727392 -161872538 - AluSq/x SINE Alu -172 141 1 2381 69 3 0 chrX 727630 727920 -161872010 - AluSx SINE Alu -21 291 1 695 295 74 44 chrX 727969 728308 -161871622 + MER92B LTR ERV1 27 375 -261 1877 168 0 43 chrX 728797 729004 -161870926 + L1PA15 LINE L1 5831 6019 -146 2187 100 0 0 chrX 729004 729284 -161870646 + AluSg SINE Alu 1 280 -30 1877 168 0 43 chrX 729284 729421 -161870509 + L1PA15 LINE L1 6019 6160 -5 385 117 48 58 chrX 729422 729525 -161870405 + Tigger3(Golem) DNA MER2_type 2425 2526 -503 1699 169 3 0 chrX 730664 730966 -161868964 - Tigger1 DNA MER2_type -165 2253 1951 2508 89 0 6 chrX 730967 731282 -161868648 + AluSq SINE Alu 1 313 0 714 213 0 0 chrX 731291 731432 -161868498 + Tigger1 DNA MER2_type 1538 1678 -740 329 115 19 0 chrX 731533 731585 -161868345 - Alu SINE Alu -249 53 1 376 217 12 0 chrX 731602 731770 -161868160 + CT-rich Low_complexity Low_complexity 1 170 0 22 0 0 0 chrX 732747 732769 -161867161 + AT_rich Low_complexity Low_complexity 1 22 0 1344 138 4 9 chrX 733030 733255 -161866675 - MLT1B LTR MaLR 0 390 167 1004 165 10 16 chrX 733261 733455 -161866475 - MLT1B LTR MaLR 0 390 198 274 317 0 0 chrX 733883 733987 -161865943 + C-rich Low_complexity Low_complexity 4 107 0 228 303 11 0 chrX 734186 734275 -161865655 + Charlie5 DNA MER1_type 29 118 -2494 2237 94 13 3 chrX 734829 735127 -161864803 - AluSp SINE Alu 0 313 13 920 98 0 0 chrX 735720 735842 -161864088 - AluY SINE Alu -12 299 178 2019 158 27 21 chrX 735958 736332 -161863598 - MER1A DNA MER1_type -61 468 93 2523 61 0 3 chrX 736523 736818 -161863112 - AluSc SINE Alu -15 294 1 337 295 0 9 chrX 737006 737111 -161862819 + MLT1C LTR MaLR 360 463 -4 1177 178 73 8 chrX 737132 737379 -161862551 + Tigger2a DNA MER2_type 1 263 -171 311 65 0 0 chrX 737389 737435 -161862495 + Tigger2a DNA MER2_type 232 277 -167 2264 119 0 3 chrX 737440 737752 -161862178 - AluSp SINE Alu -2 311 1 493 49 0 0 chrX 737812 737873 -161862057 + MER1A DNA MER1_type 261 321 -208 443 212 169 0 chrX 737853 737971 -161861959 + Tigger2a DNA MER2_type 292 429 -5 * 842 98 0 0 chrX 738089 738201 -161861729 - AluSq/x SINE Alu -200 112 1 2403 99 0 0 chrX 738505 738808 -161861122 - AluSx SINE Alu -9 303 1 2366 101 7 0 chrX 739303 739611 -161860319 - AluSg SINE Alu 0 310 1 1639 186 7 14 chrX 739879 740175 -161859755 + AluJo SINE Alu 11 304 -8 226 304 25 0 chrX 740353 740432 -161859498 - MLT1B LTR MaLR -286 181 101 183 204 0 0 chrX 740769 740813 -161859117 + (CA)n Simple_repeat Simple_repeat 2 45 0 1178 78 0 20 chrX 741129 741282 -161858648 + AluSg SINE Alu 1 150 -160 685 259 70 5 chrX 741285 741470 -161858460 - MIR SINE MIR -18 244 48 1044 83 0 0 chrX 741547 741680 -161858250 + AluY SINE Alu 167 299 -12 4970 108 13 18 chrX 741680 742109 -161857821 + L1PA13 LINE L1 5359 5784 -379 1876 99 48 61 chrX 742109 742421 -161857509 + AluSg SINE Alu 1 308 -2 4970 108 13 18 chrX 742421 742781 -161857149 + L1PA13 LINE L1 5784 6144 -19 1049 170 39 5 chrX 743024 743230 -161856700 - L1M2 LINE L1 -506 5785 5573 2163 112 30 0 chrX 743318 743622 -161856308 + AluSq SINE Alu 1 313 0 2018 118 59 42 chrX 744577 744607 -161855323 + THE1B LTR MaLR 3 31 -333 2029 133 17 0 chrX 744607 744900 -161855030 - AluSq SINE Alu -15 298 1 2018 118 59 42 chrX 744900 745224 -161854706 + THE1B LTR MaLR 31 363 -1 3051 62 10 20 chrX 745265 745666 -161854264 + L1PA7 LINE L1 5758 6154 0 1340 212 0 35 chrX 746323 746639 -161853291 - MLT2D LTR ERVL 0 414 110 932 147 0 51 chrX 746639 746795 -161853135 - AluSp/q SINE Alu -12 301 154 443 208 31 6 chrX 746942 747101 -161852829 + GA-rich Low_complexity Low_complexity 1 163 0 1615 174 16 45 chrX 747825 748136 -161851794 + AluJo SINE Alu 1 302 -10 333 196 78 0 chrX 748614 748767 -161851163 + (TA)n Simple_repeat Simple_repeat 1 165 0 40 79 0 0 chrX 748794 748883 -161851047 + AT_rich Low_complexity Low_complexity 1 89 0 354 145 90 18 chrX 748934 749100 -161850830 + (TA)n Simple_repeat Simple_repeat 1 178 0 724 158 16 16 chrX 749115 749242 -161850688 - FLAM_A SINE Alu -6 136 10 2176 112 0 3 chrX 749663 749950 -161849980 - AluSx SINE Alu -8 304 19 1186 195 24 30 chrX 750396 750694 -161849236 + L1MB3 LINE L1 5596 5891 -292 2293 178 11 15 chrX 750694 751155 -161848775 + L1MB3 LINE L1 5723 6181 -2 2168 102 27 0 chrX 751174 751467 -161848463 + AluSp SINE Alu 1 301 -12 305 69 0 52 chrX 751467 751516 -161848414 + L1MB3 LINE L1 6134 6181 -2 2139 127 0 0 chrX 751531 751838 -161848092 + AluSx SINE Alu 1 307 -5 1795 162 30 20 chrX 752768 753071 -161846859 - AluJo SINE Alu -6 306 1 2286 112 0 6 chrX 753090 753403 -161846527 - AluY SINE Alu 0 311 1 2094 68 0 8 chrX 753718 753983 -161845947 + AluY SINE Alu 45 307 -4 1377 98 0 0 chrX 753983 754157 -161845773 + AluSg/x SINE Alu 124 297 -13 505 156 0 33 chrX 754354 754444 -161845486 - AluS SINE Alu -226 87 1 216 0 0 0 chrX 754873 754897 -161845033 + (TG)n Simple_repeat Simple_repeat 1 24 0 832 200 0 0 chrX 755394 755549 -161844381 + AluJo SINE Alu 1 155 -157 1685 166 7 7 chrX 755550 755840 -161844090 + AluJo SINE Alu 23 312 0 1068 109 0 0 chrX 755924 756062 -161843868 + AluSp/q SINE Alu 162 299 -14 2090 101 0 0 chrX 756186 756462 -161843468 + AluSx SINE Alu 37 312 0 1301 235 68 29 chrX 756486 756928 -161843002 + MLT1C LTR MaLR 7 465 -2 2324 91 0 3 chrX 757945 758242 -161841688 - AluSc SINE Alu -13 296 1 301 263 30 0 chrX 759507 759606 -161840324 - MLT2D LTR ERVL -310 104 3 29 70 0 0 chrX 759803 759860 -161840070 + AT_rich Low_complexity Low_complexity 1 57 0 297 0 0 0 chrX 759863 759896 -161840034 + (TA)n Simple_repeat Simple_repeat 1 33 0 3098 61 8 5 chrX 759898 760523 -161839407 - L1PA7 LINE L1 -2 6152 5392 3614 161 4 85 chrX 760638 761416 -161838514 - LTR62 LTR ERVK -4 715 1 1280 201 60 2 chrX 761421 761830 -161838100 - LTR19A LTR ERV1 0 486 1 2197 129 0 3 chrX 762664 762974 -161836956 + AluSq SINE Alu 1 309 -4 982 250 79 27 chrX 763159 763542 -161836388 + MLT1C LTR MaLR 45 454 -13 492 169 0 11 chrX 764328 764339 -161835591 + L1PB1 LINE L1 5782 5792 -359 219 88 0 0 chrX 764339 764373 -161835557 + (CA)n Simple_repeat Simple_repeat 2 35 0 492 169 0 11 chrX 764373 764450 -161835480 + L1PB1 LINE L1 5792 5869 -282 2390 66 0 3 chrX 764451 764753 -161835177 - L1PA7 LINE L1 -3 6151 5851 3321 172 33 33 chrX 764753 765365 -161834565 + L1PB2 LINE L1 5460 6095 -56 2202 120 0 10 chrX 765365 765665 -161834265 + AluSx SINE Alu 4 300 -12 3321 172 33 33 chrX 765665 765723 -161834207 + L1PB2 LINE L1 6094 6151 0 1929 212 22 7 chrX 765953 766359 -161833571 - MSTB1 LTR MaLR 0 432 21 2372 114 0 0 chrX 766442 766750 -161833180 - AluSx SINE Alu -4 308 1 281 232 24 19 chrX 767531 767638 -161832292 - MLT1C LTR MaLR -353 114 31 896 97 0 0 chrX 767696 767809 -161832121 + AluSg SINE Alu 1 113 -197 989 85 0 0 chrX 767809 767938 -161831992 + L1PA8 LINE L1 6034 6162 -10 421 217 0 23 chrX 767960 768085 -161831845 - MLT1D LTR MaLR -10 495 260 846 122 0 0 chrX 768085 768208 -161831722 + AluSp/q SINE Alu 190 312 -1 2087 104 10 23 chrX 768493 768800 -161831130 + AluSc SINE Alu 6 308 -1 562 75 54 21 chrX 768940 769033 -161830897 + MER4A LTR ERV1 3 98 -566 257 59 0 0 chrX 769045 769079 -161830851 + Alu SINE Alu 1 34 -266 944 142 25 12 chrX 969362 969524 -161630406 + AluJo/FRAM SINE Alu 136 299 -13 1202 130 12 0 chrX 970145 970314 -161629616 - AluSg/x SINE Alu -10 300 130 1043 145 54 0 chrX 970409 970575 -161629355 - AluSq SINE Alu -5 308 134 2394 103 3 0 chrX 970575 970877 -161629053 - AluSq SINE Alu -10 303 1 180 0 0 0 chrX 971245 971265 -161628665 + (TA)n Simple_repeat Simple_repeat 1 20 0 2427 82 0 0 chrX 971355 971646 -161628284 - AluSx SINE Alu -8 304 14 4671 79 92 0 chrX 971965 972597 -161627333 - LTR8 LTR ERV1 -1 690 1 2545 116 83 2 chrX 973115 973511 -161626419 + MSTA LTR MaLR 1 428 0 2112 128 0 0 chrX 973616 973906 -161626024 + AluSx SINE Alu 1 290 -22 366 244 0 0 chrX 974070 974205 -161625725 + CT-rich Low_complexity Low_complexity 2 136 0 598 186 6 6 chrX 974218 974379 -161625551 + CT-rich Low_complexity Low_complexity 2 162 0 409 239 6 6 chrX 974396 974572 -161625358 + CT-rich Low_complexity Low_complexity 1 176 0 266 300 33 0 chrX 974592 974682 -161625248 + CT-rich Low_complexity Low_complexity 2 94 0 1683 181 23 13 chrX 974899 975208 -161624722 + AluJo SINE Alu 1 312 0 2189 106 7 3 chrX 975493 975786 -161624144 + AluSx SINE Alu 1 294 -18 2283 92 0 3 chrX 976238 976530 -161623400 + AluSc SINE Alu 1 291 -18 21 0 0 0 chrX 976530 976551 -161623379 + AT_rich Low_complexity Low_complexity 1 21 0 2147 137 0 3 chrX 976618 976924 -161623006 - AluSx SINE Alu -4 308 4 2086 71 0 8 chrX 977487 977742 -161622188 + AluSq SINE Alu 1 253 -60 924 182 18 0 chrX 977742 977907 -161622023 + AluJb SINE Alu 145 312 0 905 126 0 14 chrX 978416 978559 -161621371 - FRAM SINE Alu -3 173 33 29 0 0 0 chrX 978905 978934 -161620996 + AT_rich Low_complexity Low_complexity 1 29 0 211 237 40 45 chrX 979190 979367 -161620563 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 393 203 38 30 chrX 979292 979662 -161620268 + (TA)n Simple_repeat Simple_repeat 1 372 0 750 231 40 5 chrX 980141 980340 -161619590 + MER20 DNA MER1_type 7 212 -7 224 256 33 44 chrX 980827 981007 -161618923 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 222 192 62 27 chrX 980942 981088 -161618842 + (TA)n Simple_repeat Simple_repeat 1 151 0 * 230 259 25 49 chrX 981083 981245 -161618685 + (TATAA)n Simple_repeat Simple_repeat 5 162 0 210 241 59 6 chrX 981331 981501 -161618429 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 328 166 44 61 chrX 981435 981616 -161618314 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 426 133 0 53 chrX 981811 981886 -161618044 - AluS SINE Alu -246 72 2 30 27 0 0 chrX 981921 981958 -161617972 + AT_rich Low_complexity Low_complexity 1 37 0 2144 122 21 0 chrX 982185 982473 -161617457 - AluSq SINE Alu -19 294 1 2203 111 9 19 chrX 982592 982907 -161617023 + AluSx SINE Alu 1 312 0 401 129 14 0 chrX 982908 982978 -161616952 + (TA)n Simple_repeat Simple_repeat 1 71 0 313 156 0 78 chrX 983119 983196 -161616734 + MER53 DNA DNA 119 189 0 1850 128 28 24 chrX 984328 984616 -161615314 + AluJo SINE Alu 1 289 -23 937 135 0 0 chrX 985837 985970 -161613960 - L1PA16 LINE L1 -248 5918 5786 805 167 177 37 chrX 985966 986181 -161613749 + L1PA16 LINE L1 5922 6166 0 * 239 53 0 26 chrX 986272 986310 -161613620 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1769 165 3 7 chrX 986344 986629 -161613301 - AluJb SINE Alu -5 307 24 1934 147 0 20 chrX 986932 987224 -161612706 - AluJo SINE Alu -26 286 1 1774 166 39 3 chrX 987624 987908 -161612022 + AluJo SINE Alu 1 294 -18 425 237 59 25 chrX 987997 988115 -161611815 - MLT1J LTR MaLR -164 347 226 1751 174 7 3 chrX 988341 988639 -161611291 - AluJo SINE Alu -13 299 1 2163 127 0 7 chrX 989321 989628 -161610302 + AluSx SINE Alu 1 305 -7 1752 149 57 20 chrX 990344 990645 -161609285 + AluJb SINE Alu 1 312 0 2651 46 0 0 chrX 990648 990955 -161608975 + AluY SINE Alu 1 307 -4 267 257 36 36 chrX 991261 991401 -161608529 + (TA)n Simple_repeat Simple_repeat 1 140 0 1644 163 41 24 chrX 992048 992222 -161607708 - AluJb SINE Alu -13 299 116 303 49 0 0 chrX 992222 992263 -161607667 + (TG)n Simple_repeat Simple_repeat 2 42 0 1644 163 41 24 chrX 992263 992382 -161607548 - AluJb SINE Alu -196 116 1 1841 171 3 0 chrX 993616 993942 -161605988 - AluJo SINE Alu 0 312 1 836 150 111 28 chrX 994054 994234 -161605696 - MER4E-int LTR ERV1 -1653 5105 4911 1658 174 0 7 chrX 994234 994516 -161605414 - MER4E LTR ERV1 0 779 500 3508 138 29 16 chrX 994530 995090 -161604840 + MER50 LTR ERV1 1 571 -163 2430 76 0 7 chrX 995090 995392 -161604538 - AluSq SINE Alu -13 300 1 3508 138 29 16 chrX 995392 995411 -161604519 + MER50 LTR ERV1 571 588 -146 1001 137 18 12 chrX 995411 995579 -161604351 - MER4E-int LTR ERV1 -2421 4337 4169 1600 99 5 9 chrX 995579 995792 -161604138 + AluSq SINE Alu 85 296 -17 471 138 0 0 chrX 995808 995888 -161604042 - MER4E-int LTR ERV1 -2572 4186 4107 2881 118 60 128 chrX 995910 996017 -161603913 + MER4A LTR ERV1 2 115 -664 207 0 0 0 chrX 996017 996040 -161603890 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2881 118 60 128 chrX 996040 996638 -161603292 + MER4A LTR ERV1 115 779 0 769 145 7 62 chrX 996638 996783 -161603147 - MER4E-int LTR ERV1 -2653 4105 3969 281 186 17 0 chrX 996783 996842 -161603088 + MER72 LTR ERV1 663 722 0 4459 105 2 3 chrX 996865 997466 -161602464 - MER4A LTR ERV1 0 600 1 4899 136 8 45 chrX 997466 997478 -161602452 - MER4E-int LTR ERV1 -2794 3964 3953 2061 159 14 30 chrX 997478 997848 -161602082 + THE1B LTR MaLR 1 364 0 4899 136 8 45 chrX 997848 998181 -161601749 - MER4E-int LTR ERV1 -2805 3953 3609 2101 134 0 3 chrX 998181 998473 -161601457 + AluSx SINE Alu 5 295 -17 4899 136 8 45 chrX 998473 998575 -161601355 - MER4E-int LTR ERV1 -3149 3609 3505 1477 115 55 0 chrX 998575 998793 -161601137 - MER30 DNA MER1_type 0 230 1 4899 136 8 45 chrX 998793 999187 -161600743 - MER4E-int LTR ERV1 -3253 3505 3152 1379 201 21 97 chrX 999187 999471 -161600459 + LTR9 LTR ERV1 1 305 -307 2293 83 0 10 chrX 999471 999793 -161600137 + AluSq SINE Alu 1 319 0 1379 201 21 97 chrX 999793 999847 -161600083 + LTR9 LTR ERV1 305 305 -307 1998 91 4 0 chrX 999847 1000101 -161599829 + AluSp SINE Alu 47 301 -12 1379 201 21 97 chrX 1000101 1000183 -161599747 + LTR9 LTR ERV1 304 391 -221 936 184 116 54 chrX 1000161 1000438 -161599492 + LTR19C LTR ERV1 486 779 0 * 1558 151 36 4 chrX 1000439 1000717 -161599213 - MER4E-int LTR ERV1 -3604 3154 2868 963 271 43 88 chrX 1000728 1001237 -161598693 + LTR1B LTR ERV1 39 524 -302 12676 150 64 73 chrX 1001344 1001569 -161598361 - MER4E-int LTR ERV1 -3885 2873 2647 1619 163 10 27 chrX 1001569 1001869 -161598061 + AluJo SINE Alu 1 295 -17 12676 150 64 73 chrX 1001869 1002479 -161597451 - MER4E-int LTR ERV1 -4111 2647 2033 2212 119 0 10 chrX 1002479 1002781 -161597149 - AluSg SINE Alu -11 299 1 12676 150 64 73 chrX 1002781 1002858 -161597072 - MER4E-int LTR ERV1 -4725 2033 1957 2181 119 0 3 chrX 1002858 1003161 -161596769 + AluSx SINE Alu 1 302 -10 12676 150 64 73 chrX 1003161 1004065 -161595865 - MER4E-int LTR ERV1 -4801 1957 1046 2274 105 20 0 chrX 1004065 1004371 -161595559 + AluSx SINE Alu 1 312 0 12676 150 64 73 chrX 1004371 1005445 -161594485 - MER4E-int LTR ERV1 -5712 1046 6 2365 159 84 16 chrX 1005449 1005889 -161594041 - MER4E LTR ERV1 0 779 310 972 219 21 29 chrX 1005889 1006095 -161593835 + L1MC4 LINE L1 7316 7521 -521 2226 110 0 0 chrX 1006095 1006394 -161593536 + AluSx SINE Alu 1 299 -13 972 219 21 29 chrX 1006394 1006429 -161593501 + L1MC4 LINE L1 7521 7555 -487 232 254 59 35 chrX 1006463 1006632 -161593298 - L1M4 LINE L1 -3861 2285 2113 1666 155 3 91 chrX 1007054 1007073 -161592857 - AluJo SINE Alu -6 306 287 180 0 0 0 chrX 1007073 1007093 -161592837 + (TAG)n Simple_repeat Simple_repeat 1 20 0 1666 155 3 91 chrX 1007093 1007402 -161592528 - AluJo SINE Alu -25 287 7 2135 122 70 14 chrX 1007573 1007917 -161592013 + THE1B LTR MaLR 1 363 -1 23 33 0 0 chrX 1008364 1008394 -161591536 + AT_rich Low_complexity Low_complexity 1 30 0 323 34 134 0 chrX 1008394 1008513 -161591417 + (TA)n Simple_repeat Simple_repeat 2 136 0 396 222 0 30 chrX 1008516 1008615 -161591315 - L1MA7 LINE L1 -25 6266 6171 * 427 149 14 0 chrX 1008613 1008687 -161591243 + L1MA7 LINE L1 6043 6117 -174 281 308 47 0 chrX 1008794 1008901 -161591029 - MIR SINE MIR -52 210 99 2005 60 0 8 chrX 1009348 1009598 -161590332 + AluSq SINE Alu 1 248 -65 457 118 13 0 chrX 1009816 1009892 -161590038 + Alu SINE Alu 225 301 -10 437 132 44 22 chrX 1009892 1009983 -161589947 - L1MB3 LINE L1 -5 6178 6086 2088 121 0 3 chrX 1009985 1010267 -161589663 + AluSx SINE Alu 6 286 -26 512 101 14 0 chrX 1010310 1010379 -161589551 + AluJ/FLAM SINE Alu 9 78 -234 1857 166 130 13 chrX 1010409 1010801 -161589129 + MER66B LTR ERV1 48 485 -1 479 284 132 11 chrX 1011052 1011242 -161588688 - MIR SINE MIR -2 260 48 217 115 19 39 chrX 1012537 1012589 -161587341 + CT-rich Low_complexity Low_complexity 3 53 0 661 169 11 33 chrX 1012605 1012788 -161587142 + CT-rich Low_complexity Low_complexity 2 180 0 1146 153 0 0 chrX 1012846 1013023 -161586907 - AluSg/x SINE Alu 0 310 134 385 239 69 96 chrX 1013169 1013387 -161586543 + MLT1L LTR MaLR 225 461 -75 1380 235 72 70 chrX 1013966 1014013 -161585917 + MER74B LTR ERVL 57 102 -520 1570 166 72 11 chrX 1014013 1014291 -161585639 - AluJo SINE Alu -17 295 1 1380 235 72 70 chrX 1014291 1014371 -161585559 + MER74B LTR ERVL 102 180 -442 1924 127 81 35 chrX 1014371 1014718 -161585212 + THE1B LTR MaLR 2 364 0 1380 235 72 70 chrX 1014718 1015129 -161584801 + MER74B LTR ERVL 180 597 -25 530 178 139 0 chrX 1015142 1015243 -161584687 + FLAM_C SINE Alu 4 118 -15 32 0 0 0 chrX 1015243 1015275 -161584655 + AT_rich Low_complexity Low_complexity 1 32 0 2183 117 0 0 chrX 1015328 1015635 -161584295 + AluSx SINE Alu 1 307 0 324 158 0 0 chrX 1015978 1016035 -161583895 + GA-rich Low_complexity Low_complexity 3 59 0 1263 82 10 46 chrX 1016055 1016250 -161583680 - AluSg/x SINE Alu -4 306 119 206 398 12 12 chrX 1016458 1016619 -161583311 + GA-rich Low_complexity Low_complexity 3 163 0 * 239 321 0 42 chrX 1016577 1016745 -161583185 + A-rich Low_complexity Low_complexity 2 162 0 302 62 0 0 chrX 1016883 1016931 -161582999 + AluSp/q SINE Alu 256 303 0 679 270 42 5 chrX 1017257 1017472 -161582458 + LTR16C LTR ERVL 224 446 -45 22 0 0 0 chrX 1017508 1017530 -161582400 + AT_rich Low_complexity Low_complexity 1 22 0 1650 174 7 37 chrX 1017530 1017829 -161582101 - AluJo SINE Alu -22 290 1 1997 138 7 0 chrX 1017844 1018141 -161581789 - AluSx SINE Alu -11 301 3 1742 185 7 0 chrX 1019768 1020071 -161579859 - 7SLRNA srpRNA srpRNA 0 320 16 1637 201 0 26 chrX 1020139 1020448 -161579482 + AluJo SINE Alu 1 301 -11 1143 82 0 0 chrX 1020749 1020884 -161579046 + AluSx SINE Alu 1 135 -178 40424 73 10 6 chrX 1020895 1027035 -161572895 + L1PA6 LINE L1 11 6174 0 1049 189 0 0 chrX 1027051 1027220 -161572710 + AluSx SINE Alu 129 297 -15 1712 147 41 10 chrX 1027385 1027678 -161572252 + AluJo SINE Alu 1 302 -10 240 301 27 0 chrX 1028616 1028689 -161571241 + CT-rich Low_complexity Low_complexity 5 79 0 310 97 0 32 chrX 1028699 1028761 -161571169 + (TG)n Simple_repeat Simple_repeat 2 61 0 1834 98 8 0 chrX 1029193 1029438 -161570492 + AluSx SINE Alu 50 296 -16 1804 138 0 56 chrX 1029976 1030295 -161569635 - AluJo SINE Alu -11 301 1 28 0 0 0 chrX 1030830 1030858 -161569072 + AT_rich Low_complexity Low_complexity 1 28 0 1714 137 63 4 chrX 1030900 1031171 -161568759 - AluJo SINE Alu -17 295 9 229 155 0 71 chrX 1031239 1031323 -161568607 + T-rich Low_complexity Low_complexity 1 78 0 3278 170 17 7 chrX 1031346 1031923 -161568007 - L1MA8 LINE L1 -13 6278 5696 2865 69 6 0 chrX 1032156 1032506 -161567424 - L1PB1 LINE L1 -7 6144 5793 294 29 0 0 chrX 1032506 1032541 -161567389 + (TG)n Simple_repeat Simple_repeat 1 35 0 2046 96 25 53 chrX 1032743 1032853 -161567077 - L1PB1 LINE L1 -364 5787 5675 264 30 0 0 chrX 1032853 1032886 -161567044 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2133 108 0 0 chrX 1032886 1033165 -161566765 - AluSx SINE Alu -33 279 1 2046 96 25 53 chrX 1033165 1033375 -161566555 - L1PB1 LINE L1 -474 5677 5475 24 85 0 0 chrX 1033873 1033932 -161565998 + AT_rich Low_complexity Low_complexity 1 59 0 667 171 0 16 chrX 1033945 1034068 -161565862 - L1MA5A LINE L1 -5 6292 6172 498 278 179 0 chrX 1034089 1034251 -161565679 + MIR SINE MIR 42 232 -30 236 210 30 10 chrX 1034335 1034648 -161565282 + (TA)n Simple_repeat Simple_repeat 1 319 0 264 184 41 0 chrX 1034667 1034814 -161565116 + (TA)n Simple_repeat Simple_repeat 1 153 0 534 259 179 0 chrX 1034847 1035009 -161564921 - MIR SINE MIR -30 232 42 290 250 35 43 chrX 1035030 1035146 -161564784 + L1MA5A LINE L1 6172 6286 -11 21 0 0 0 chrX 1035146 1035167 -161564763 + AT_rich Low_complexity Low_complexity 1 21 0 314 197 17 11 chrX 1035167 1035345 -161564585 + (TA)n Simple_repeat Simple_repeat 1 179 0 2167 151 34 77 chrX 1036098 1036594 -161563336 - L1MA8 LINE L1 -1 6290 5816 469 210 4 4 chrX 1036950 1037188 -161562742 + CT-rich Low_complexity Low_complexity 1 238 0 4023 99 4 4 chrX 1037320 1037855 -161562075 + L1PA11 LINE L1 5639 6173 -1 2635 133 70 0 chrX 1038368 1038766 -161561164 - MSTA LTR MaLR 0 428 3 2755 134 5 2 chrX 1038768 1039171 -161560759 - MSTA-int LTR MaLR 0 1651 1248 437 353 95 17 chrX 1040105 1040400 -161559530 + L1MC4a LINE L1 5612 5929 -1879 1168 0 38 13 chrX 1040530 1040689 -161559241 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 695 205 0 0 chrX 1040690 1040802 -161559128 - FLAM_A SINE Alu -25 117 6 2021 166 28 8 chrX 1041129 1041485 -161558445 + MLT1A1 LTR MaLR 1 363 -2 1909 179 65 3 chrX 1042268 1042637 -161557293 - MER89 LTR ERV1 0 559 168 1143 247 0 0 chrX 1042960 1043183 -161556747 - MER58A DNA MER1_type 0 224 2 283 257 14 0 chrX 1043303 1043373 -161556557 + MER34C LTR ERV1 24 94 -491 767 199 0 0 chrX 1043375 1043529 -161556401 + FRAM SINE Alu 1 62 0 247 237 17 0 chrX 1043894 1043953 -161555977 + LTR48B LTR ERV1 1 60 -584 1053 220 46 85 chrX 1044175 1044440 -161555490 + MER39 LTR ERV1 150 424 -283 1696 157 3 21 chrX 1044440 1044727 -161555203 + AluSx SINE Alu 1 282 -30 1053 220 46 85 chrX 1044727 1044909 -161555021 + MER39 LTR ERV1 424 707 0 200 122 0 49 chrX 1045527 1045568 -161554362 + (GAA)n Simple_repeat Simple_repeat 1 39 0 1446 185 45 24 chrX 1046922 1047209 -161552721 + AluJb SINE Alu 1 293 -19 1794 80 4 4 chrX 1047710 1047936 -161551994 + AluSc SINE Alu 1 226 -83 32 0 0 0 chrX 1048120 1048152 -161551778 + AT_rich Low_complexity Low_complexity 1 32 0 2184 91 3 0 chrX 1048152 1048437 -161551493 - AluY SINE Alu -25 286 1 3591 58 9 0 chrX 1048547 1048979 -161550951 + MLT2A1 LTR ERVL 1 436 -8 1380 160 43 19 chrX 1049472 1049728 -161550202 - MLT2C2 LTR ERVL -5 459 198 1408 144 0 0 chrX 1049728 1049943 -161549987 - AluSg/x SINE Alu -13 297 83 1141 179 25 0 chrX 1049943 1050144 -161549786 - MLT2C1 LTR ERVL -191 206 1 311 81 40 14 chrX 1050393 1050467 -161549463 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 788 177 0 48 chrX 1050485 1050632 -161549298 + FLAM_C SINE Alu 2 141 -2 1817 192 73 84 chrX 1050634 1051180 -161548750 - LTR64 LTR ERVK -18 540 1 255 109 46 45 chrX 1051183 1051241 -161548689 + MLT2B2 LTR ERVL 475 515 0 427 122 73 0 chrX 1052376 1052458 -161547472 - L1MC2 LINE L1 -2 6342 6255 3458 110 15 68 chrX 1052462 1052544 -161547386 - MER4B LTR ERV1 0 779 694 4289 141 5 11 chrX 1052544 1053183 -161546747 - MER41B LTR ERV1 0 635 1 3458 110 15 68 chrX 1053183 1053713 -161546217 - MER4B LTR ERV1 -85 694 32 2179 113 3 3 chrX 1053713 1054013 -161545917 - AluSx SINE Alu -12 300 1 3458 110 15 68 chrX 1054013 1054044 -161545886 - MER4B LTR ERV1 -747 32 1 269 216 0 0 chrX 1054069 1054120 -161545810 - L1MC2 LINE L1 -129 6215 6165 2268 141 18 39 chrX 1054122 1054638 -161545292 - MER4A LTR ERV1 -2 662 90 1592 97 63 295 chrX 1054650 1055375 -161544555 - LTR12 LTR ERV1 -156 558 2 650 116 0 11 chrX 1055375 1055470 -161544460 - MER4A LTR ERV1 -570 94 1 394 174 12 23 chrX 1055470 1055556 -161544374 - L1MC2 LINE L1 -176 6168 6084 1809 128 4 0 chrX 1055663 1055921 -161544009 - AluSx SINE Alu -53 259 1 1466 219 29 0 chrX 1056021 1056299 -161543631 - AluJo SINE Alu -26 286 1 2009 158 0 0 chrX 1056306 1056617 -161543313 - AluJb SINE Alu -1 311 1 2167 236 33 9 chrX 1056617 1057159 -161542771 - L1MB5 LINE L1 -32 6142 5615 2278 104 7 0 chrX 1057159 1057458 -161542472 - AluSp SINE Alu -12 301 1 2167 236 33 9 chrX 1057458 1057476 -161542454 - L1MB5 LINE L1 -559 5615 5599 1950 148 3 10 chrX 1057496 1057806 -161542124 + AluSx SINE Alu 5 312 0 495 113 0 0 chrX 1058012 1058074 -161541856 + AluSc SINE Alu 2 63 -250 1494 114 0 0 chrX 1058074 1058267 -161541663 + AluSc SINE Alu 101 293 -16 2107 146 14 6 chrX 1058274 1058623 -161541307 - MLT1A1 LTR MaLR -2 363 12 1217 161 21 0 chrX 1058908 1059101 -161540829 + AluJo SINE Alu 6 202 -110 2081 143 0 10 chrX 1059110 1059418 -161540512 - AluSx SINE Alu -7 305 1 205 217 57 38 chrX 1060038 1060144 -161539786 + (TCCA)n Simple_repeat Simple_repeat 3 110 0 545 219 24 0 chrX 1060144 1060440 -161539490 + (TCTA)n Simple_repeat Simple_repeat 1 303 0 204 258 16 0 chrX 1060503 1060565 -161539365 + (TA)n Simple_repeat Simple_repeat 2 64 0 * 209 194 0 0 chrX 1060530 1060566 -161539364 + (CATA)n Simple_repeat Simple_repeat 2 37 0 310 298 16 8 chrX 1060598 1060719 -161539211 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 671 132 17 35 chrX 1060741 1060915 -161539015 + (TCTA)n Simple_repeat Simple_repeat 1 171 0 302 296 30 15 chrX 1060917 1061049 -161538881 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 * 332 273 0 48 chrX 1061001 1061188 -161538742 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 * 334 298 16 8 chrX 1061100 1061224 -161538706 + (TCCA)n Simple_repeat Simple_repeat 3 127 0 644 126 30 18 chrX 1061257 1061424 -161538506 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 339 170 9 27 chrX 1061436 1061548 -161538382 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 655 218 12 98 chrX 1062502 1062746 -161537184 + L1MA4 LINE L1 6077 6298 -2 221 89 36 36 chrX 1063036 1063092 -161536838 + (TA)n Simple_repeat Simple_repeat 2 57 0 198 71 0 0 chrX 1063120 1063148 -161536782 + (TA)n Simple_repeat Simple_repeat 2 29 0 1351 101 291 0 chrX 1063578 1063805 -161536125 + AluSx SINE Alu 1 293 -9 1089 206 11 35 chrX 1064268 1064308 -161535622 - MLT1D LTR MaLR 0 505 466 1688 202 3 3 chrX 1064308 1064605 -161535325 + AluJb SINE Alu 1 297 -15 1089 206 11 35 chrX 1064605 1065018 -161534912 - MLT1D LTR MaLR -39 466 2 22 0 0 0 chrX 1065064 1065086 -161534844 + AT_rich Low_complexity Low_complexity 1 22 0 962 211 88 53 chrX 1065089 1065430 -161534500 - MLT1C LTR MaLR -114 353 1 802 197 185 31 chrX 1065440 1065736 -161534194 - MLT1C LTR MaLR -144 361 1 22 56 0 0 chrX 1065745 1065781 -161534149 + AT_rich Low_complexity Low_complexity 1 36 0 2862 176 94 25 chrX 1066198 1066336 -161533594 - LTR26 LTR ERV1 0 603 476 2034 136 7 0 chrX 1066336 1066631 -161533299 - AluSq SINE Alu -16 297 1 2862 176 94 25 chrX 1066631 1067056 -161532874 - LTR26 LTR ERV1 -127 476 1 1375 184 4 0 chrX 1067692 1067926 -161532004 - L1PA16 LINE L1 -9 6157 5923 290 214 11 34 chrX 1067942 1068031 -161531899 - L1MA9 LINE L1 -30 6282 6196 1765 143 7 33 chrX 1068157 1068430 -161531500 + AluJo SINE Alu 1 266 -46 1879 107 4 32 chrX 1068430 1068686 -161531244 - L1PA16 LINE L1 -230 5936 5687 1805 193 0 0 chrX 1068686 1068981 -161530949 - AluJb SINE Alu -17 295 1 1879 107 4 32 chrX 1068981 1069004 -161530926 - L1PA16 LINE L1 -479 5687 5665 24 53 0 0 chrX 1069383 1069421 -161530509 + AT_rich Low_complexity Low_complexity 1 38 0 200 259 0 17 chrX 1069448 1069506 -161530424 + (TG)n Simple_repeat Simple_repeat 2 58 0 643 118 57 10 chrX 1069537 1069946 -161529984 + (TAGA)n Simple_repeat Simple_repeat 1 428 0 315 96 0 0 chrX 1069946 1069998 -161529932 + (CATA)n Simple_repeat Simple_repeat 1 52 0 2245 69 24 0 chrX 1070657 1070945 -161528985 + AluY SINE Alu 1 295 -16 4275 141 38 0 chrX 1071026 1071684 -161528246 - L1PA16 LINE L1 -8 6158 5476 356 121 4 0 chrX 1071691 1071811 -161528119 - MADE1 DNA Mariner 0 80 1 195 259 121 35 chrX 1071831 1071947 -161527983 - MIR SINE MIR -1 261 136 226 235 41 24 chrX 1072545 1072715 -161527215 + (TA)n Simple_repeat Simple_repeat 1 173 0 22 35 0 0 chrX 1072724 1072753 -161527177 + AT_rich Low_complexity Low_complexity 1 29 0 823 178 0 0 chrX 1072790 1072919 -161527011 + FRAM SINE Alu 23 151 -25 22 80 0 0 chrX 1072951 1073001 -161526929 + AT_rich Low_complexity Low_complexity 1 50 0 382 170 33 55 chrX 1073105 1073287 -161526643 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 294 211 51 23 chrX 1073641 1073816 -161526114 + (TA)n Simple_repeat Simple_repeat 1 180 0 227 186 43 0 chrX 1073879 1073949 -161525981 + (TA)n Simple_repeat Simple_repeat 2 74 0 949 264 55 42 chrX 1074563 1074942 -161524988 + MLT1B LTR MaLR 1 384 -6 2007 99 70 0 chrX 1075514 1075787 -161524143 + AluSp SINE Alu 1 292 -21 551 15 15 0 chrX 1075798 1075866 -161524064 + (CA)n Simple_repeat Simple_repeat 2 70 0 736 174 0 43 chrX 1075902 1076040 -161523890 - FLAM_C SINE Alu -9 134 3 2400 130 30 25 chrX 1076166 1076528 -161523402 + THE1B LTR MaLR 1 364 0 391 206 0 11 chrX 1076689 1076781 -161523149 - L1MC4 LINE L1 -17 8025 7935 186 133 0 0 chrX 1076819 1076849 -161523081 + (TC)n Simple_repeat Simple_repeat 2 31 0 1460 237 72 86 chrX 1076858 1077604 -161522326 - L1MC4 LINE L1 -135 7907 7172 25 31 0 0 chrX 1077614 1077646 -161522284 + AT_rich Low_complexity Low_complexity 1 32 0 2296 107 3 0 chrX 1078374 1078682 -161521248 - AluSg1 SINE Alu 0 309 1 3173 123 11 0 chrX 1079933 1080388 -161519542 - L1PB2 LINE L1 -9 6142 5683 2291 75 4 0 chrX 1080432 1080711 -161519219 + AluSc SINE Alu 13 292 -17 506 260 82 41 chrX 1080936 1081155 -161518775 - L2 LINE L2 -52 3261 3034 24 0 0 0 chrX 1081193 1081217 -161518713 + AT_rich Low_complexity Low_complexity 1 24 0 235 347 31 0 chrX 1081217 1081315 -161518615 - L2 LINE L2 -277 3036 2936 412 172 35 0 chrX 1081892 1081979 -161517951 - L1MB3 LINE L1 0 6183 6094 2219 166 20 43 chrX 1081982 1082427 -161517503 - L1MA4 LINE L1 -280 6020 5586 2138 123 3 3 chrX 1083243 1083553 -161516377 - AluSq SINE Alu -3 310 1 1629 156 7 19 chrX 1084664 1084933 -161514997 + MER2 DNA MER2_type 1 266 -79 651 238 10 10 chrX 1084935 1085141 -161514789 + L1M4 LINE L1 4993 5198 -948 211 216 0 54 chrX 1085164 1085238 -161514692 + A-rich Low_complexity Low_complexity 1 70 0 323 277 0 0 chrX 1085264 1085329 -161514601 - MER2 DNA MER2_type -1 344 280 424 195 80 0 chrX 1085332 1085445 -161514485 + L1M4 LINE L1 4643 4764 -1382 29 47 0 0 chrX 1085485 1085528 -161514402 + AT_rich Low_complexity Low_complexity 1 43 0 2518 258 76 8 chrX 1085560 1086508 -161513422 - L1M4 LINE L1 -948 5198 4187 2222 109 3 0 chrX 1086528 1086822 -161513108 + AluSq SINE Alu 6 300 -13 2191 125 3 0 chrX 1086826 1087129 -161512801 + AluSp SINE Alu 1 304 -9 21 36 0 0 chrX 1087208 1087236 -161512694 + AT_rich Low_complexity Low_complexity 1 28 0 1558 151 44 4 chrX 1087236 1087507 -161512423 - L1PA16 LINE L1 -10 6156 5875 475 246 41 8 chrX 1088212 1088334 -161511596 + L1MA9 LINE L1 6178 6303 -9 2157 128 0 3 chrX 1088403 1088708 -161511222 + AluSx SINE Alu 1 304 -8 180 111 0 0 chrX 1088914 1088941 -161510989 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 1470 156 7 68 chrX 1089136 1089355 -161510575 - L1MA5A LINE L1 -15 6282 6084 3771 132 4 9 chrX 1089355 1089885 -161510045 - MER1A DNA MER1_type 0 527 1 1470 156 7 68 chrX 1089885 1089960 -161509970 - L1MA5A LINE L1 -213 6084 6006 2196 124 0 0 chrX 1090970 1091268 -161508662 + AluSx SINE Alu 1 298 -14 1069 203 64 0 chrX 1091443 1091679 -161508251 - AluJo SINE Alu -61 251 1 1775 141 163 68 chrX 1091929 1092298 -161507632 - MER4A LTR ERV1 0 664 261 481 111 100 11 chrX 1092298 1092388 -161507542 - MER4A LTR ERV1 -566 98 1 1020 211 26 103 chrX 1092613 1093029 -161506901 - MLT1B LTR MaLR 0 390 7 181 336 26 43 chrX 1093058 1093174 -161506756 - MIR SINE MIR -139 123 10 2372 181 37 45 chrX 1093178 1093446 -161506484 + MER66B LTR ERV1 1 265 -221 1912 127 0 7 chrX 1093446 1093722 -161506208 + AluSx SINE Alu 36 309 -3 2372 181 37 45 chrX 1093722 1093940 -161505990 + MER66B LTR ERV1 265 483 -3 1184 130 52 23 chrX 1093983 1094227 -161505703 + L1PB1 LINE L1 5693 5941 -215 211 403 21 27 chrX 1094532 1094718 -161505212 - MIR3 SINE MIR -5 203 19 345 337 46 17 chrX 1094894 1095069 -161504861 + MIR SINE MIR 73 252 -10 1942 149 3 0 chrX 1096706 1097008 -161502922 - AluJb SINE Alu -9 303 1 265 226 20 0 chrX 1097231 1097302 -161502628 - MER45A DNA AcHobo -1 177 103 2948 113 5 27 chrX 1097324 1097607 -161502323 + MER57B LTR ERV1 1 272 -162 2352 52 7 29 chrX 1097607 1097914 -161502016 - AluY SINE Alu -11 300 1 2948 113 5 27 chrX 1097914 1098074 -161501856 + MER57B LTR ERV1 272 434 0 265 200 0 0 chrX 1098074 1098124 -161501806 - MER45A DNA AcHobo -50 128 79 767 243 44 56 chrX 1098141 1098550 -161501380 - MER34B LTR ERV1 -8 557 76 1721 87 0 0 chrX 1098592 1098823 -161501107 + L1PA12 LINE L1 5813 6043 -125 1694 129 25 73 chrX 1098823 1099186 -161500744 - MER4A LTR ERV1 0 664 261 489 186 21 10 chrX 1099186 1099283 -161500647 - MER4A LTR ERV1 -566 98 1 423 91 0 0 chrX 1099283 1099338 -161500592 + L1PA13 LINE L1 6040 6094 -69 347 194 83 28 chrX 1099342 1099450 -161500480 - MER34C LTR ERV1 -435 150 37 7948 35 1 0 chrX 1099526 1101163 -161498767 - L1PA3 LINE L1 -2 6153 4514 3428 168 21 33 chrX 1101163 1101440 -161498490 - LTR51 LTR ERV1 -14 657 378 1796 154 48 7 chrX 1101440 1101732 -161498198 + AluJb SINE Alu 4 307 -5 3428 168 21 33 chrX 1101732 1101911 -161498019 - LTR51 LTR ERV1 -293 378 198 1806 173 0 20 chrX 1101911 1102206 -161497724 + AluJb SINE Alu 1 289 -23 3428 168 21 33 chrX 1102206 1102413 -161497517 - LTR51 LTR ERV1 -473 198 1 2172 197 10 18 chrX 1102636 1103037 -161496893 + MER57A LTR ERV1 2 399 -4 639 169 0 119 chrX 1103037 1103197 -161496733 - AluJb SINE Alu -23 289 149 1051 139 0 0 chrX 1103568 1103726 -161496204 + FRAM SINE Alu 12 169 -7 820 148 0 0 chrX 1103791 1103906 -161496024 + AluJ SINE Alu 5 119 -193 455 171 0 24 chrX 1103898 1103980 -161495950 - AluY SINE Alu -227 83 4 * 1036 203 5 0 chrX 1103987 1104184 -161495746 + AluJ SINE Alu 107 304 -8 2249 110 0 3 chrX 1104209 1104510 -161495420 + AluSg SINE Alu 1 300 -10 813 150 21 50 chrX 1104553 1104693 -161495237 + AluJo SINE Alu 1 136 -176 1114 214 18 7 chrX 1104833 1105109 -161494821 + L1MA4 LINE L1 6022 6300 0 333 351 61 63 chrX 1105389 1105565 -161494365 - L2 LINE L2 -164 3108 2933 1350 249 32 99 chrX 1105565 1105910 -161494020 + LTR45 LTR ERV1 1 368 -157 1824 166 10 13 chrX 1105910 1106223 -161493707 - AluJo SINE Alu 0 312 1 1350 249 32 99 chrX 1106223 1106372 -161493558 + LTR45 LTR ERV1 368 455 -70 1595 185 10 3 chrX 1106372 1106664 -161493266 + AluJb SINE Alu 6 299 -13 1350 249 32 99 chrX 1106664 1106731 -161493199 + LTR45 LTR ERV1 455 525 0 333 351 61 63 chrX 1106731 1107157 -161492773 - L2 LINE L2 -339 2933 2511 1738 180 7 16 chrX 1107294 1107599 -161492331 - AluSx SINE Alu -8 304 3 2236 118 0 6 chrX 1108440 1108754 -161491176 + AluSx SINE Alu 1 312 0 872 163 0 15 chrX 1109077 1109212 -161490718 - FLAM_C SINE Alu 0 133 1 792 233 81 106 chrX 1110044 1110537 -161489393 - MLT1D LTR MaLR -24 481 1 379 195 58 12 chrX 1110548 1110689 -161489241 - MLT1D LTR MaLR -123 360 191 797 178 0 0 chrX 1110802 1110920 -161489010 - FLAM_C SINE Alu -15 118 1 744 224 33 22 chrX 1111051 1111234 -161488696 - MLT1D LTR MaLR -320 185 1 222 105 0 0 chrX 1112704 1112742 -161487188 + (GA)n Simple_repeat Simple_repeat 2 39 0 509 105 30 63 chrX 1112742 1112986 -161486944 + (TAGA)n Simple_repeat Simple_repeat 1 235 0 604 48 29 19 chrX 1113006 1113109 -161486821 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 425 208 15 15 chrX 1113108 1113289 -161486641 + (TAGA)n Simple_repeat Simple_repeat 1 180 -465 * 2493 124 5 27 chrX 1113289 1113661 -161486269 + THE1B LTR MaLR 1 364 0 425 208 15 15 chrX 1113661 1113753 -161486177 + (TAGA)n Simple_repeat Simple_repeat 180 645 0 1779 162 0 32 chrX 1114765 1115074 -161484856 - AluJb SINE Alu -13 299 1 1240 236 0 0 chrX 1115157 1115399 -161484531 - AluJb SINE Alu -20 292 51 180 0 0 0 chrX 1115399 1115419 -161484511 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2089 119 0 4 chrX 1115419 1115696 -161484234 - AluSx SINE Alu -28 284 9 2202 167 29 12 chrX 1115703 1116122 -161483808 - L1MC1 LINE L1 -1 6332 5907 2196 113 0 0 chrX 1117172 1117500 -161482430 + AluSx SINE Alu 1 328 0 616 176 43 152 chrX 1118316 1118526 -161481404 - MER39B LTR ERV1 -402 251 65 324 127 0 0 chrX 1118547 1118602 -161481328 + (CA)n Simple_repeat Simple_repeat 2 56 0 1883 160 13 7 chrX 1118656 1118963 -161480967 + AluJb SINE Alu 1 309 -3 1070 153 49 0 chrX 1120196 1120399 -161479531 - MER65A LTR ERV1 0 445 233 899 143 0 0 chrX 1120399 1120532 -161479398 + FLAM_C SINE Alu 1 133 0 369 190 10 47 chrX 1120539 1120811 -161479119 + GA-rich Low_complexity Low_complexity 1 261 0 556 177 10 0 chrX 1122078 1122174 -161477756 - AluJ/FLAM SINE Alu -214 98 2 1006 143 20 31 chrX 1122176 1122372 -161477558 - MER39B LTR ERV1 -384 269 76 * 2600 91 0 6 chrX 1122355 1122707 -161477223 + MER41A LTR ERV1 205 554 0 374 100 17 0 chrX 1122707 1122767 -161477163 + MER4E LTR ERV1 706 766 0 231 114 0 0 chrX 1122913 1122948 -161476982 + (TC)n Simple_repeat Simple_repeat 1 35 0 225 254 48 0 chrX 1122955 1123018 -161476912 + CT-rich Low_complexity Low_complexity 3 68 0 395 185 31 17 chrX 1123029 1123403 -161476527 + CT-rich Low_complexity Low_complexity 1 379 0 731 313 47 49 chrX 1123528 1124042 -161475888 + MER34 LTR ERV1 1 513 -29 225 0 0 0 chrX 1124462 1124487 -161475443 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 911 137 6 22 chrX 1124533 1124716 -161475214 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1869 148 39 7 chrX 1124723 1125006 -161474924 - AluJo SINE Alu -19 293 2 357 145 0 0 chrX 1125766 1125842 -161474088 + (CA)n Simple_repeat Simple_repeat 2 77 0 206 174 0 22 chrX 1125880 1125926 -161474004 + T-rich Low_complexity Low_complexity 3 47 0 23 0 0 0 chrX 1126113 1126136 -161473794 + AT_rich Low_complexity Low_complexity 1 23 0 2423 87 0 13 chrX 1126761 1127071 -161472859 + AluSq SINE Alu 3 308 -5 3565 120 24 0 chrX 1127243 1127777 -161472153 + L1PB4 LINE L1 5610 6156 0 21 0 0 0 chrX 1127860 1127881 -161472049 + AT_rich Low_complexity Low_complexity 1 21 0 1201 225 30 27 chrX 1128082 1128380 -161471550 - MLT1C LTR MaLR 0 467 169 888 142 0 47 chrX 1128407 1128555 -161471375 - AluJb SINE Alu -171 141 1 242 156 44 22 chrX 1128559 1128604 -161471326 - MLT1C LTR MaLR -215 175 130 712 223 113 87 chrX 1128857 1129350 -161470580 + MER34C LTR ERV1 5 490 -75 1925 164 3 0 chrX 1130012 1130305 -161469625 - AluJb SINE Alu -18 294 1 1016 156 21 1 chrX 1130331 1130527 -161469403 + L1MB5 LINE L1 5613 5804 -370 1016 144 22 0 chrX 1130527 1130707 -161469223 + L1MB5 LINE L1 5980 6163 -11 1016 156 21 1 chrX 1130707 1130731 -161469199 + L1MB5 LINE L1 5804 6163 -11 1695 168 10 17 chrX 1130905 1131197 -161468733 - AluJb SINE Alu -22 290 1 839 171 0 36 chrX 1131197 1131337 -161468593 - AluJb SINE Alu -177 135 1 21 0 0 0 chrX 1131462 1131483 -161468447 + AT_rich Low_complexity Low_complexity 1 21 0 1617 161 4 11 chrX 1131484 1131744 -161468186 + AluJb SINE Alu 1 258 -54 31 26 0 0 chrX 1131756 1131794 -161468136 + AT_rich Low_complexity Low_complexity 1 38 0 216 184 0 0 chrX 1132364 1132413 -161467517 + (CA)n Simple_repeat Simple_repeat 1 49 0 2011 152 0 0 chrX 1132496 1132806 -161467124 + AluSx SINE Alu 1 310 -2 1830 176 0 28 chrX 1132921 1133240 -161466690 - AluJo SINE Alu -2 310 1 193 322 76 34 chrX 1133350 1133468 -161466462 + MIR3 SINE MIR 83 205 -3 750 180 0 22 chrX 1136324 1136463 -161463467 + FLAM_C SINE Alu 8 143 0 1516 180 60 7 chrX 1136471 1136755 -161463175 + AluJo SINE Alu 3 301 -11 189 0 0 0 chrX 1136935 1136956 -161462974 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2089 141 3 0 chrX 1137154 1137453 -161462477 - AluSx SINE Alu -12 300 1 1932 167 0 0 chrX 1137752 1138045 -161461885 - AluJo SINE Alu -19 293 1 1708 182 3 35 chrX 1138362 1138681 -161461249 + AluJo SINE Alu 1 309 -3 2272 90 0 29 chrX 1138788 1139100 -161460830 + AluSx SINE Alu 1 303 -9 1159 116 0 0 chrX 1139103 1139258 -161460672 + AluSg/x SINE Alu 141 295 -17 746 212 11 38 chrX 1139621 1139805 -161460125 + MLT1B LTR MaLR 2 180 -210 766 178 0 22 chrX 1139805 1139940 -161459990 + FLAM_C SINE Alu 2 133 -10 726 205 22 32 chrX 1139945 1140111 -161459819 + MLT1B LTR MaLR 176 341 -126 2132 118 29 50 chrX 1140111 1140494 -161459436 + THE1C LTR MaLR 1 375 0 726 205 22 32 chrX 1140494 1140512 -161459418 + MLT1B LTR MaLR 341 358 -109 497 193 28 0 chrX 1140520 1140665 -161459265 + (TA)n Simple_repeat Simple_repeat 1 149 0 2202 127 36 28 chrX 1140928 1141289 -161458641 + THE1B LTR MaLR 1 364 0 3958 113 0 11 chrX 1142281 1142841 -161457089 - MER41A LTR ERV1 0 554 1 1541 150 33 57 chrX 1142841 1143174 -161456756 + L1MC1 LINE L1 6009 6333 0 263 225 38 0 chrX 1143185 1143265 -161456665 + L1M4 LINE L1 5815 5897 -287 883 124 58 0 chrX 1143266 1143403 -161456527 - LTR12 LTR ERV1 -234 480 336 441 101 130 0 chrX 1143403 1143472 -161456458 + AluJb SINE Alu 209 286 -26 1804 154 20 29 chrX 1143741 1144047 -161455883 - AluJo SINE Alu -9 303 1 33 0 0 0 chrX 1144829 1144862 -161455068 + AT_rich Low_complexity Low_complexity 1 33 0 1269 173 18 162 chrX 1144867 1145317 -161454613 - L1PA15 LINE L1 0 6165 5781 262 127 1 52 chrX 1145339 1145397 -161454533 + L1P2 LINE L1 5774 5828 -327 312 267 0 22 chrX 1145431 1145521 -161454409 - L1MC4 LINE L1 -1339 6703 6616 211 257 14 14 chrX 1145522 1145561 -161454369 + (TA)n Simple_repeat Simple_repeat 1 42 -32 545 113 0 0 chrX 1145561 1145641 -161454289 + MADE1 DNA Mariner 1 80 0 211 257 14 14 chrX 1145641 1145675 -161454255 + (TA)n Simple_repeat Simple_repeat 41 74 0 923 151 0 0 chrX 1145676 1145822 -161454108 - L1PA15 LINE L1 -368 5788 5643 596 262 12 0 chrX 1146285 1146457 -161453473 - MER96B DNA MER1_type? -243 174 1 180 176 0 0 chrX 1146541 1146575 -161453355 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1726 195 7 0 chrX 1146614 1146912 -161453018 - AluJo SINE Alu -12 300 1 833 187 0 0 chrX 1146926 1147060 -161452870 - AluJo SINE Alu -178 134 1 225 176 0 0 chrX 1147080 1147114 -161452816 + Tigger5 DNA MER2_type 2273 2306 -17 315 206 14 14 chrX 1147164 1147237 -161452693 + Tigger5 DNA MER2_type 2251 2323 0 440 150 35 0 chrX 1147237 1147350 -161452580 + (TA)n Simple_repeat Simple_repeat 1 117 0 27 29 0 0 chrX 1147383 1147417 -161452513 + AT_rich Low_complexity Low_complexity 1 34 0 191 35 0 35 chrX 1147465 1147494 -161452436 + (TA)n Simple_repeat Simple_repeat 1 28 0 397 270 70 0 chrX 1147789 1147904 -161452026 + MER77 LTR ERV1 77 199 -406 1098 236 96 47 chrX 1147952 1148358 -161451572 + MER77 LTR ERV1 173 598 -7 357 109 0 0 chrX 1148550 1148605 -161451325 + (GA)n Simple_repeat Simple_repeat 2 56 0 2172 123 0 0 chrX 1149854 1150139 -161449791 + AluSx SINE Alu 11 295 -17 3231 86 36 2 chrX 1150969 1151410 -161448520 + L1PA13 LINE L1 5683 6138 -25 * 4547 119 1 35 chrX 1151402 1152118 -161447812 - L1PA15 LINE L1 -162 6003 5312 800 148 56 14 chrX 1152119 1152261 -161447669 + THE1C LTR MaLR 1 148 -227 1852 174 17 62 chrX 1152730 1153133 -161446797 + MLT1B LTR MaLR 3 387 -3 1598 161 56 7 chrX 1153179 1153465 -161446465 + MLT1A1 LTR MaLR 64 363 -2 685 242 6 0 chrX 1153599 1153756 -161446174 + L1PB4 LINE L1 5994 6151 -5 1756 175 9 62 chrX 1154749 1154794 -161445136 - L1MB8 LINE L1 -6 6172 6126 1637 195 30 0 chrX 1154794 1155091 -161444839 - AluJo SINE Alu -6 306 1 1756 175 9 62 chrX 1155091 1155467 -161444463 - L1MB8 LINE L1 -52 6126 5773 985 90 0 34 chrX 1155824 1156002 -161443928 + (TTCC)n Simple_repeat Simple_repeat 2 173 0 1653 173 10 33 chrX 1156026 1156508 -161443422 - AluJo SINE Alu 0 312 6 1283 237 58 89 chrX 1156640 1156928 -161443002 - MER77 LTR ERV1 -8 597 360 2415 156 44 2 chrX 1156928 1157339 -161442591 - MSTA LTR MaLR 0 428 1 1283 237 58 89 chrX 1157339 1157600 -161442330 - MER77 LTR ERV1 -245 360 92 310 125 42 0 chrX 1157749 1157797 -161442133 + MLT1D LTR MaLR 1 50 -455 277 188 42 0 chrX 1157798 1157846 -161442084 + MLT1D LTR MaLR 1 50 -455 239 81 54 0 chrX 1157854 1157891 -161442039 + MLT1D LTR MaLR 12 50 -455 1801 185 91 8 chrX 1157892 1158275 -161441655 + MLT1D LTR MaLR 1 415 -90 532 200 31 7 chrX 1158913 1159208 -161440722 + GA-rich Low_complexity Low_complexity 1 302 0 274 233 31 8 chrX 1159253 1159382 -161440548 + GA-rich Low_complexity Low_complexity 2 133 0 334 180 22 22 chrX 1159397 1159486 -161440444 + GA-rich Low_complexity Low_complexity 2 90 0 382 153 81 0 chrX 1159497 1159608 -161440322 + GA-rich Low_complexity Low_complexity 4 123 0 200 250 0 13 chrX 1159644 1159720 -161440210 + GA-rich Low_complexity Low_complexity 3 77 0 2000 131 166 66 chrX 1160738 1161149 -161438781 - LTR47A LTR ERVL 0 452 1 241 148 49 0 chrX 1162866 1162927 -161437003 + (TATG)n Simple_repeat Simple_repeat 4 67 0 2011 150 0 6 chrX 1163884 1164198 -161435732 - AluSx SINE Alu 0 312 1 904 198 51 42 chrX 1164366 1164583 -161435347 + MER20 DNA MER1_type 1 219 0 473 161 39 13 chrX 1164617 1164772 -161435158 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 2270 128 30 41 chrX 1164772 1165140 -161434790 - THE1B LTR MaLR 0 364 1 428 35 17 0 chrX 1165142 1165200 -161434730 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 724 207 93 5 chrX 1165204 1165397 -161434533 + MER20 DNA MER1_type 1 210 -9 291 140 0 0 chrX 1166861 1166911 -161433019 + (CATA)n Simple_repeat Simple_repeat 4 53 0 454 220 14 24 chrX 1167013 1167314 -161432616 + (TATATG)n Simple_repeat Simple_repeat 1 297 0 253 211 0 84 chrX 1167358 1167453 -161432477 - L1MC4 LINE L1 -1341 6701 6615 196 200 10 40 chrX 1167464 1167564 -161432366 + (TA)n Simple_repeat Simple_repeat 2 98 0 195 243 0 29 chrX 1167598 1167701 -161432229 + (TA)n Simple_repeat Simple_repeat 1 100 0 242 233 22 22 chrX 1167703 1167793 -161432137 + L1MC4 LINE L1 6614 6703 -1339 223 247 0 21 chrX 1167796 1167893 -161432037 + (TATG)n Simple_repeat Simple_repeat 4 98 0 21 36 0 0 chrX 1168779 1168807 -161431123 + AT_rich Low_complexity Low_complexity 1 28 0 647 196 0 6 chrX 1169104 1169283 -161430647 + GA-rich Low_complexity Low_complexity 2 179 0 455 212 7 0 chrX 1169378 1169524 -161430406 + GA-rich Low_complexity Low_complexity 2 148 0 2252 102 0 0 chrX 1169658 1169951 -161429979 - AluSx SINE Alu -13 299 7 415 182 107 16 chrX 1170033 1170154 -161429776 - L1MB4 LINE L1 -25 6155 6024 * 797 228 82 30 chrX 1170135 1170253 -161429677 + L1MB7 LINE L1 5692 5802 -382 2564 123 76 27 chrX 1170253 1170661 -161429269 - MSTA LTR MaLR 0 428 1 797 228 82 30 chrX 1170661 1170774 -161429156 + L1MB7 LINE L1 5802 5935 -249 1916 107 70 0 chrX 1170880 1171150 -161428780 + AluSx SINE Alu 3 291 -21 255 103 0 0 chrX 1171710 1171749 -161428181 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1932 186 55 28 chrX 1172212 1172743 -161427187 - MLT2A2 LTR ERVL 0 554 1 1319 234 64 39 chrX 1173990 1174425 -161425505 - MLT1C LTR MaLR 0 467 22 2291 125 36 22 chrX 1176144 1176503 -161423427 + THE1B LTR MaLR 1 364 0 1511 181 55 43 chrX 1176508 1176856 -161423074 + MLT1A2 LTR MaLR 23 374 0 746 270 99 69 chrX 1176859 1177239 -161422691 + MLT1D LTR MaLR 59 455 -50 2673 138 19 0 chrX 1177239 1177592 -161422338 - L1PB1 LINE L1 0 6151 5787 270 0 0 0 chrX 1177592 1177622 -161422308 + (TG)n Simple_repeat Simple_repeat 2 31 0 2673 138 19 0 chrX 1177622 1177681 -161422249 - L1PB1 LINE L1 -364 5787 5731 746 270 99 69 chrX 1177681 1177734 -161422196 + MLT1D LTR MaLR 455 505 0 3068 248 14 3 chrX 1178181 1178826 -161421104 + MER82 DNA MER2_type 1 652 -1 2237 97 0 13 chrX 1179475 1179773 -161420157 - AluSc SINE Alu -15 294 1 2051 129 20 0 chrX 1179773 1180067 -161419863 - AluSx SINE Alu -12 300 1 2145 174 14 8 chrX 1180092 1180455 -161419475 + MLT1A1 LTR MaLR 1 365 0 2597 71 0 0 chrX 1181156 1181467 -161418463 + AluY SINE Alu 1 311 0 768 179 19 13 chrX 1181774 1181930 -161418000 - L1MB3 LINE L1 -7 6176 6020 2478 96 8 22 chrX 1181956 1182321 -161417609 - L1PB1 LINE L1 -80 6071 5712 905 167 4 132 chrX 1182372 1182540 -161417390 + MER82 DNA MER2_type 212 337 -316 1664 165 0 112 chrX 1182540 1182879 -161417051 - AluJo SINE Alu -1 301 1 905 167 4 132 chrX 1182879 1182967 -161416963 + MER82 DNA MER2_type 337 435 -218 213 213 0 0 chrX 1182974 1183021 -161416909 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 293 52 9 chrX 1183833 1183949 -161415981 - L1MB7 LINE L1 -15 6169 6049 272 61 0 0 chrX 1183949 1183982 -161415948 - U2 snRNA snRNA -155 33 1 1760 188 31 53 chrX 1183986 1184402 -161415528 - L1MB5 LINE L1 -114 6060 5654 450 293 177 24 chrX 1184602 1184936 -161414994 + L2 LINE L2 2927 3311 -2 314 121 0 17 chrX 1185390 1185448 -161414482 + (TCC)n Simple_repeat Simple_repeat 1 57 0 801 205 118 46 chrX 1185448 1185643 -161414287 - AluJo SINE Alu -18 294 86 1385 165 5 22 chrX 1185643 1185867 -161414063 - AluJo SINE Alu -92 220 1 194 121 30 0 chrX 1187582 1187615 -161412315 + (CA)n Simple_repeat Simple_repeat 1 34 0 1884 148 13 10 chrX 1187862 1188167 -161411763 - AluJo SINE Alu -6 306 1 2525 120 3 0 chrX 1188189 1188555 -161411375 - L1PB4 LINE L1 0 6156 5790 1120 127 6 0 chrX 1188555 1188713 -161411217 + THE1B LTR MaLR 3 161 -203 8822 57 16 1 chrX 1188713 1190582 -161409348 - L1PA6 LINE L1 -4 6150 4287 1976 43 30 0 chrX 1190583 1190818 -161409112 + L1PA6 LINE L1 4045 4286 -1860 1141 115 72 48 chrX 1190818 1191026 -161408904 + THE1B LTR MaLR 152 364 0 1298 119 12 27 chrX 1191026 1191278 -161408652 - L1PB4 LINE L1 -360 5796 5550 1253 219 32 69 chrX 1191862 1191935 -161407995 + MLT1A1 LTR MaLR 1 75 -290 2028 117 23 94 chrX 1191935 1192328 -161407602 + MLT1A1 LTR MaLR 1 365 0 1253 219 32 69 chrX 1192328 1192633 -161407297 + MLT1A1 LTR MaLR 75 365 0 2121 156 35 20 chrX 1192809 1192998 -161406932 + L1MA7 LINE L1 5889 6074 -217 2363 129 116 13 chrX 1192998 1193386 -161406544 - MSTA LTR MaLR 0 428 1 2121 156 35 20 chrX 1193386 1193593 -161406337 + L1MA7 LINE L1 6074 6291 0 885 147 27 7 chrX 1194067 1194217 -161405713 - L1MA4 LINE L1 -302 5998 5846 758 283 90 28 chrX 1194217 1194652 -161405278 + MER20B DNA MER1_type 292 753 -30 423 0 0 0 chrX 1194985 1195032 -161404898 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1708 179 0 11 chrX 1195035 1195320 -161404610 - AluJo SINE Alu -30 282 1 986 181 68 0 chrX 1195619 1195796 -161404134 - MER5A DNA MER1_type 0 189 1 3686 148 50 2 chrX 1195946 1196521 -161403409 - LTR26 LTR ERV1 0 603 1 693 193 8 0 chrX 1197894 1198013 -161401917 - L1MC1 LINE L1 0 6333 6214 365 153 0 0 chrX 1198020 1198079 -161401851 + L1MC1 LINE L1 5791 5849 -484 485 154 23 17 chrX 1198196 1198371 -161401559 + (TA)n Simple_repeat Simple_repeat 1 176 0 1172 196 117 56 chrX 1198430 1198772 -161401158 + MLT1A1 LTR MaLR 1 363 -2 199 270 95 0 chrX 1199830 1199893 -161400037 + MIR SINE MIR 102 170 -92 23 0 0 0 chrX 1200180 1200203 -161399727 + AT_rich Low_complexity Low_complexity 1 23 0 5362 128 19 8 chrX 1200204 1201038 -161398892 - L1PA15 LINE L1 -2 6163 5321 2151 140 0 6 chrX 1201038 1201352 -161398578 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 1201429 1201457 -161398473 + AT_rich Low_complexity Low_complexity 1 28 0 1717 184 7 3 chrX 1203427 1203732 -161396198 + AluJo SINE Alu 1 306 -6 1459 104 4 0 chrX 1204517 1204538 -161395392 + L1P4 LINE L1 5573 5592 -559 2530 83 0 93 chrX 1204538 1204935 -161394995 - L1PA14 LINE L1 -2 6159 5800 1459 104 4 0 chrX 1204935 1205132 -161394798 + L1PA14 LINE L1 5592 5800 -351 368 180 0 0 chrX 1205825 1205886 -161394044 + MER63 DNA MER1_type 687 747 -89 227 374 0 0 chrX 1205891 1205974 -161393956 + MER63 DNA MER1_type 979 1061 -1 1858 105 201 10 chrX 1206761 1207074 -161392856 + THE1C LTR MaLR 3 375 0 996 133 0 0 chrX 1207170 1207350 -161392580 + (TA)n Simple_repeat Simple_repeat 1 180 0 1712 170 10 14 chrX 1207352 1207640 -161392290 - AluJo SINE Alu -25 287 1 1561 125 38 19 chrX 1207965 1208229 -161391701 + L1MA5A LINE L1 6029 6297 0 337 202 0 21 chrX 1208310 1208404 -161391526 + GA-rich Low_complexity Low_complexity 1 92 0 306 250 15 0 chrX 1208651 1208719 -161391211 + MER5B DNA MER1_type 1 69 -109 317 184 0 13 chrX 1208766 1208842 -161391088 + GA-rich Low_complexity Low_complexity 2 76 0 562 263 39 19 chrX 1208853 1209058 -161390872 + L1ME LINE L1 5439 5647 -474 28 91 0 0 chrX 1209338 1209415 -161390515 + AT_rich Low_complexity Low_complexity 1 77 0 663 209 11 6 chrX 1209700 1209877 -161390053 + CT-rich Low_complexity Low_complexity 3 180 0 343 253 135 70 chrX 1211229 1211458 -161388472 - MLT1J2 LTR MaLR -143 307 64 253 228 33 11 chrX 1212170 1212262 -161387668 + (TA)n Simple_repeat Simple_repeat 2 95 0 564 215 20 108 chrX 1212671 1212866 -161387064 + MER5B DNA MER1_type 1 178 0 460 269 14 28 chrX 1213151 1213292 -161386638 + MIR SINE MIR 68 206 -56 24 0 0 0 chrX 1213892 1213916 -161386014 + AT_rich Low_complexity Low_complexity 1 24 0 408 191 0 0 chrX 1214406 1214495 -161385435 + (ATG)n Simple_repeat Simple_repeat 3 91 0 224 314 98 49 chrX 1214745 1215009 -161384921 - L2 LINE L2 -674 2640 2364 228 355 0 0 chrX 1215211 1215287 -161384643 - MLT1I LTR MaLR -236 173 98 1162 243 80 39 chrX 1216152 1216592 -161383338 - MLT1C LTR MaLR -8 459 2 552 219 73 35 chrX 1216603 1216883 -161383047 - MLT1D LTR MaLR -144 361 14 713 232 81 32 chrX 1216896 1217193 -161382737 - MLT1C LTR MaLR -122 345 24 1162 182 5 5 chrX 1217455 1217664 -161382266 - AluJo SINE Alu -4 308 100 1485 171 25 18 chrX 1217664 1217938 -161381992 + AluJo SINE Alu 24 299 -13 2098 119 36 7 chrX 1218158 1218461 -161381469 - AluSx SINE Alu 0 312 1 2097 145 0 0 chrX 1219264 1219574 -161380356 - AluSx SINE Alu -2 310 1 2417 66 3 7 chrX 1219871 1220174 -161379756 + AluY SINE Alu 1 302 -9 2387 139 58 0 chrX 1221173 1221517 -161378413 + THE1B LTR MaLR 1 364 0 1840 163 0 0 chrX 1222056 1222366 -161377564 - AluJb SINE Alu 0 310 1 1088 124 10 161 chrX 1222771 1222989 -161376941 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1454 204 25 0 chrX 1222989 1223269 -161376661 - AluJo SINE Alu -25 287 1 1088 124 10 161 chrX 1223269 1223341 -161376589 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1957 146 0 17 chrX 1223342 1223644 -161376286 + AluJb SINE Alu 1 297 -15 418 244 0 0 chrX 1223721 1223803 -161376127 - Tigger4(Zombi) DNA MER2_type -2649 82 1 4205 141 19 16 chrX 1223868 1224377 -161375553 + MER41B LTR ERV1 1 514 -121 2362 100 7 0 chrX 1224377 1224687 -161375243 - AluSx SINE Alu 0 312 1 4205 141 19 16 chrX 1224687 1224810 -161375120 + MER41B LTR ERV1 514 635 0 3587 111 61 23 chrX 1225368 1225938 -161373992 - MER4B LTR ERV1 -9 601 10 2496 200 28 48 chrX 1226866 1227431 -161372499 - MLT2B3 LTR ERVL 0 554 1 238 207 0 52 chrX 1227431 1227489 -161372441 + MLT1A1 LTR MaLR 308 362 -3 532 165 0 0 chrX 1227630 1227721 -161372209 + L1PB4 LINE L1 6061 6151 -5 889 223 5 11 chrX 1228114 1228302 -161371628 - MLT1A1 LTR MaLR -17 348 162 515 155 10 0 chrX 1228304 1228407 -161371523 + GA-rich Low_complexity Low_complexity 2 105 0 22 0 0 0 chrX 1228794 1228816 -161371114 + AT_rich Low_complexity Low_complexity 1 22 0 259 77 0 0 chrX 1229828 1229859 -161370071 - MADE1 DNA Mariner 0 80 47 2064 139 0 0 chrX 1229859 1230161 -161369769 + AluSx SINE Alu 1 302 -10 931 211 70 26 chrX 1230163 1230448 -161369482 + MSTD LTR MaLR 48 389 -7 1762 173 0 19 chrX 1230792 1231099 -161368831 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1231325 1231357 -161368573 + (TAA)n Simple_repeat Simple_repeat 2 33 0 43 71 0 0 chrX 1231362 1231447 -161368483 + AT_rich Low_complexity Low_complexity 1 85 0 810 158 0 0 chrX 1231487 1231607 -161368323 + FLAM_C SINE Alu 6 125 -18 4523 97 8 0 chrX 1231904 1232491 -161367439 - L1PA10 LINE L1 -4 6164 5573 257 211 42 28 chrX 1232498 1232569 -161367361 - MLT1E3 LTR MaLR -8 616 545 1776 135 8 15 chrX 1233095 1233412 -161366518 + Tigger2 DNA MER2_type 1 2609 -109 216 202 10 40 chrX 1233483 1233582 -161366348 + (TATAA)n Simple_repeat Simple_repeat 2 97 0 182 123 27 55 chrX 1233624 1233697 -161366233 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 224 288 34 0 chrX 1233721 1233867 -161366063 + (TA)n Simple_repeat Simple_repeat 1 151 0 544 213 9 19 chrX 1233868 1233976 -161365954 + Tigger2 DNA MER2_type 2601 2707 -11 22 80 0 0 chrX 1233976 1234026 -161365904 + AT_rich Low_complexity Low_complexity 1 50 0 444 305 41 15 chrX 1234161 1234358 -161365572 + MLT1H LTR MaLR 87 288 -261 514 249 154 6 chrX 1234385 1234554 -161365376 + MLT1H LTR MaLR 356 549 0 430 260 26 42 chrX 1234621 1234813 -161365117 + HAL1 LINE L1 1486 1674 -833 24 109 0 0 chrX 1235367 1235468 -161364462 + AT_rich Low_complexity Low_complexity 1 101 0 828 173 0 0 chrX 1236401 1236528 -161363402 + FLAM_C SINE Alu 1 127 -16 1919 166 0 0 chrX 1237047 1237342 -161362588 - AluJb SINE Alu -15 297 3 2565 121 20 3 chrX 1237372 1237728 -161362202 + THE1B LTR MaLR 1 362 -2 1781 174 0 0 chrX 1239249 1239530 -161360400 - AluJb SINE Alu -23 289 9 1795 147 0 53 chrX 1240661 1240981 -161358949 - AluJo SINE Alu -9 303 1 1526 172 36 7 chrX 1241417 1241696 -161358234 + MER2 DNA MER2_type 28 314 -31 1274 186 17 0 chrX 1241759 1241995 -161357935 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1243128 1243184 -161356746 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 775 140 22 27 chrX 1243206 1243541 -161356389 + (TCTA)n Simple_repeat Simple_repeat 1 333 0 235 288 0 0 chrX 1243810 1243869 -161356061 + LTR16A LTR ERVL 385 443 -7 1827 160 3 3 chrX 1244355 1244649 -161355281 - AluJo SINE Alu -18 294 1 233 232 18 0 chrX 1244736 1244792 -161355138 - L1ME3A LINE L1 -114 6056 6000 1675 169 3 40 chrX 1245374 1245514 -161354416 - AluJo SINE Alu -20 292 148 2869 105 47 0 chrX 1245514 1245923 -161354007 + MSTA LTR MaLR 1 428 0 1675 169 3 40 chrX 1245923 1246084 -161353846 - AluJo SINE Alu -164 148 2 2302 121 23 69 chrX 1246457 1246894 -161353036 + L1PB4 LINE L1 5605 6021 -135 398 171 0 0 chrX 1247005 1247075 -161352855 + L1PB4 LINE L1 6079 6148 -8 950 63 39 16 chrX 1247079 1247228 -161352702 + L1PA10 LINE L1 6039 6168 0 510 279 63 82 chrX 1247247 1247617 -161352313 - L1ME3A LINE L1 -248 5922 5579 2161 110 7 0 chrX 1247617 1247909 -161352021 + AluSx SINE Alu 1 294 -18 510 279 63 82 chrX 1247909 1248135 -161351795 - L1ME3A LINE L1 -591 5579 5350 509 254 117 64 chrX 1248179 1248572 -161351358 - L1ME3A LINE L1 -867 5279 4866 282 379 11 32 chrX 1248611 1248801 -161351129 + LTR16C LTR ERVL 73 258 -233 1210 213 54 57 chrX 1248861 1249246 -161350684 - MLT1B LTR MaLR 0 467 4 524 124 0 157 chrX 1249654 1249700 -161350230 + Tigger5 DNA MER2_type 2222 2239 -84 1869 166 16 3 chrX 1249700 1250008 -161349922 - AluJo SINE Alu 0 312 1 524 124 0 157 chrX 1250008 1250082 -161349848 + Tigger5 DNA MER2_type 2239 2323 0 1406 137 5 0 chrX 1250721 1250940 -161348990 - MLT1B LTR MaLR -12 378 159 1249 172 5 9 chrX 1250941 1251176 -161348754 - MLT1B LTR MaLR 0 396 158 1397 225 30 48 chrX 1251178 1251576 -161348354 - MLT1B LTR MaLR -1 395 1 574 213 22 7 chrX 1251941 1252489 -161347441 + GA-rich Low_complexity Low_complexity 1 556 0 236 374 0 0 chrX 1252490 1252573 -161347357 + A-rich Low_complexity Low_complexity 4 86 0 274 132 0 0 chrX 1252824 1252862 -161347068 - MER20 DNA MER1_type 0 219 182 409 105 0 0 chrX 1252863 1252920 -161347010 - Alu SINE Alu -16 296 240 2402 145 3 3 chrX 1253007 1253366 -161346564 - THE1B LTR MaLR 0 364 6 4149 153 15 44 chrX 1253366 1253770 -161346160 + LTR62 LTR ERVK 3 378 -341 1629 167 3 44 chrX 1253770 1254087 -161345843 - AluJb SINE Alu -8 304 1 4149 153 15 44 chrX 1254087 1254416 -161345514 + LTR62 LTR ERVK 378 715 -4 2825 178 10 2 chrX 1255115 1255609 -161344321 - L1MB3 LINE L1 0 6183 5686 677 183 11 22 chrX 1255964 1256144 -161343786 + CT-rich Low_complexity Low_complexity 3 180 0 447 166 36 22 chrX 1256160 1256299 -161343631 + CT-rich Low_complexity Low_complexity 1 141 0 414 79 0 16 chrX 1256684 1256747 -161343183 - L1P4 LINE L1 -671 5495 5434 329 209 91 0 chrX 1256944 1257054 -161342876 + L1P LINE L1 5196 5315 -831 564 231 103 15 chrX 1257054 1257257 -161342673 - THE1C LTR MaLR 0 375 155 276 77 0 0 chrX 1457567 1457606 -161142324 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1643 160 11 4 chrX 1457606 1457887 -161142043 - AluSx SINE Alu -28 284 2 198 0 0 0 chrX 1458941 1458963 -161140967 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 2311 104 0 0 chrX 1459007 1459306 -161140624 + AluSx SINE Alu 1 299 -13 404 222 7 0 chrX 1459440 1459584 -161140346 + CT-rich Low_complexity Low_complexity 2 146 0 647 196 0 6 chrX 1459679 1459858 -161140072 + CT-rich Low_complexity Low_complexity 2 179 0 21 36 0 0 chrX 1460155 1460183 -161139747 + AT_rich Low_complexity Low_complexity 1 28 0 2280 106 3 0 chrX 1460700 1461003 -161138927 - AluSx SINE Alu -8 304 1 986 208 38 5 chrX 1461679 1461891 -161138039 - MER20 DNA MER1_type 0 219 1 439 206 6 40 chrX 1461893 1462068 -161137862 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 934 204 37 28 chrX 1462089 1462305 -161137625 - MER20 DNA MER1_type -1 218 1 487 187 6 42 chrX 1462307 1462473 -161137457 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 469 250 0 48 chrX 1462494 1462662 -161137268 - MER20 DNA MER1_type 0 219 60 1343 153 66 94 chrX 1462801 1463088 -161136842 + LTR47A LTR ERVL 174 452 0 200 250 0 13 chrX 1464106 1464182 -161135748 + CT-rich Low_complexity Low_complexity 3 77 0 382 153 81 0 chrX 1464218 1464329 -161135601 + CT-rich Low_complexity Low_complexity 4 123 0 334 180 22 22 chrX 1464340 1464429 -161135501 + CT-rich Low_complexity Low_complexity 2 90 0 274 233 31 8 chrX 1464444 1464573 -161135357 + CT-rich Low_complexity Low_complexity 2 133 0 568 198 31 7 chrX 1464618 1464912 -161135018 + CT-rich Low_complexity Low_complexity 1 301 0 1801 185 91 8 chrX 1465550 1465933 -161133997 - MLT1D LTR MaLR -90 415 1 239 81 54 0 chrX 1465934 1465971 -161133959 - MLT1D LTR MaLR -455 50 12 277 188 42 0 chrX 1465979 1466027 -161133903 - MLT1D LTR MaLR -455 50 1 310 125 42 0 chrX 1466028 1466076 -161133854 - MLT1D LTR MaLR -455 50 1 1236 241 58 89 chrX 1466225 1466486 -161133444 + MER77 LTR ERV1 92 302 -303 2386 158 44 2 chrX 1466486 1466897 -161133033 + MSTA LTR MaLR 1 428 0 1236 241 58 89 chrX 1466897 1467185 -161132745 + MER77 LTR ERV1 302 597 -8 1775 173 6 26 chrX 1467317 1467754 -161132176 + AluJo SINE Alu 6 436 0 1797 174 0 0 chrX 1468195 1468476 -161131454 - AluJb SINE Alu -23 289 9 1814 147 0 53 chrX 1469607 1469927 -161130003 - AluJo SINE Alu -9 303 1 1483 176 36 7 chrX 1470363 1470642 -161129288 + MER2 DNA MER2_type 28 314 -31 1303 187 21 0 chrX 1470705 1470940 -161128990 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1472074 1472130 -161127800 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 786 127 32 22 chrX 1472162 1472489 -161127441 + (TCTA)n Simple_repeat Simple_repeat 1 330 0 235 288 0 0 chrX 1472758 1472817 -161127113 + LTR16A LTR ERVL 385 443 -7 1834 163 3 3 chrX 1473302 1473596 -161126334 - AluJo SINE Alu -18 294 1 234 232 18 0 chrX 1473683 1473739 -161126191 - L1ME3A LINE L1 -114 6056 6000 1060 113 0 14 chrX 1474320 1474462 -161125468 - FRAM SINE Alu -20 156 17 663 112 0 28 chrX 1474462 1474569 -161125361 + MSTA LTR MaLR 3 106 -322 2253 142 58 0 chrX 1475639 1475983 -161123947 + THE1B LTR MaLR 1 364 0 1860 163 0 0 chrX 1476521 1476831 -161123099 - AluJb SINE Alu 0 310 1 1070 124 10 161 chrX 1477236 1477454 -161122476 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1473 204 25 0 chrX 1477454 1477734 -161122196 - AluJo SINE Alu -25 287 1 1070 124 10 161 chrX 1477734 1477806 -161122124 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1995 142 0 17 chrX 1477807 1478109 -161121821 + AluJb SINE Alu 1 297 -15 414 244 0 0 chrX 1478186 1478268 -161121662 - Tigger4(Zombi) DNA MER2_type -2649 82 1 2215 130 32 0 chrX 1478333 1478671 -161121259 + MER41B LTR ERV1 1 349 -286 2048 147 0 6 chrX 1479465 1479779 -161120151 - AluSx SINE Alu 0 312 1 819 197 50 46 chrX 1479947 1480165 -161119765 + MER20 DNA MER1_type 1 219 0 473 161 39 13 chrX 1480199 1480354 -161119576 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 2106 125 33 41 chrX 1480354 1480721 -161119209 - THE1B LTR MaLR 0 364 1 587 39 13 0 chrX 1480723 1480801 -161119129 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 736 207 93 5 chrX 1480805 1480998 -161118932 + MER20 DNA MER1_type 1 210 -9 291 140 0 0 chrX 1482461 1482511 -161117419 + (CATA)n Simple_repeat Simple_repeat 4 53 0 238 264 23 11 chrX 1482628 1482715 -161117215 + L1MC4 LINE L1 6615 6702 -1340 336 224 47 28 chrX 1482857 1482964 -161116966 + MLT1A1 LTR MaLR 256 364 -1 458 261 114 63 chrX 1483253 1483647 -161116283 + L1ME3A LINE L1 4866 5279 -867 492 285 62 79 chrX 1483691 1483917 -161116013 + L1ME3A LINE L1 5350 5578 -592 2198 106 7 0 chrX 1483917 1484209 -161115721 - AluSx SINE Alu -18 294 1 492 285 62 79 chrX 1484209 1484577 -161115353 + L1ME3A LINE L1 5578 5922 -248 904 63 39 16 chrX 1484596 1484745 -161115185 - L1PA10 LINE L1 0 6168 6039 2752 155 23 48 chrX 1484746 1485308 -161114622 - L1PB4 LINE L1 -4 6152 5605 707 224 7 26 chrX 1485684 1485836 -161114094 + AluJo SINE Alu 5 153 -159 1633 108 58 8 chrX 1485842 1486102 -161113828 - MSTA LTR MaLR 0 428 156 870 192 17 17 chrX 1486285 1486457 -161113473 + MSTD LTR MaLR 218 389 -7 1775 173 0 19 chrX 1486801 1487108 -161112822 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1487334 1487366 -161112564 + (TAA)n Simple_repeat Simple_repeat 2 33 0 36 82 0 0 chrX 1487371 1487456 -161112474 + AT_rich Low_complexity Low_complexity 1 85 0 812 158 0 0 chrX 1487496 1487616 -161112314 + FLAM_C SINE Alu 6 125 -18 1713 102 42 25 chrX 1487904 1488188 -161111742 - L1PA10 LINE L1 -1 6167 5879 253 141 58 0 chrX 1488493 1488613 -161111317 + GA-rich Low_complexity Low_complexity 1 127 0 709 114 13 27 chrX 1488634 1488783 -161111147 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 1731 173 12 62 chrX 1489133 1489508 -161110422 + L1MB8 LINE L1 5773 6126 -52 1602 195 30 3 chrX 1489508 1489806 -161110124 + AluJo SINE Alu 1 306 -6 1731 173 12 62 chrX 1489806 1489851 -161110079 + L1MB8 LINE L1 6126 6172 -6 685 242 6 0 chrX 1490844 1491001 -161108929 - L1PB4 LINE L1 -5 6151 5994 1542 161 60 7 chrX 1491135 1491420 -161108510 - MLT1A1 LTR MaLR -2 363 64 234 184 61 0 chrX 1491467 1491516 -161108414 - MLT1B LTR MaLR -3 387 336 776 139 0 17 chrX 1491618 1491791 -161108139 + (A)n Simple_repeat Simple_repeat 1 170 0 1880 146 3 43 chrX 1491815 1492165 -161107765 + MSTC LTR MaLR 93 428 0 22 56 0 0 chrX 1492177 1492213 -161107717 + AT_rich Low_complexity Low_complexity 1 36 0 1504 171 38 17 chrX 1492296 1492457 -161107473 - AluJo SINE Alu -19 293 122 384 22 0 0 chrX 1492457 1492502 -161107428 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1504 171 38 17 chrX 1492502 1492627 -161107303 - AluJo SINE Alu -190 122 1 2128 55 4 0 chrX 1492636 1492919 -161107011 - AluY SINE Alu 0 311 28 914 234 23 18 chrX 1493286 1493504 -161106426 + MER20 DNA MER1_type 1 219 0 1143 40 35 6 chrX 1493520 1493694 -161106236 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1196 173 10 13 chrX 1493886 1494121 -161105809 - MLT1B LTR MaLR 0 396 158 1502 210 24 37 chrX 1494121 1494518 -161105412 - MLT1B LTR MaLR 0 467 1 538 203 31 12 chrX 1494882 1495517 -161104413 + GA-rich Low_complexity Low_complexity 1 647 0 1934 107 70 0 chrX 1495834 1496104 -161103826 + AluSx SINE Alu 3 291 -21 255 103 0 0 chrX 1496664 1496703 -161103227 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1100 166 20 11 chrX 1497166 1497374 -161102556 - MLT2A2 LTR ERVL 0 453 293 1391 121 11 0 chrX 1498697 1498887 -161101043 - AluSq SINE Alu -121 192 1 241 148 49 0 chrX 1500105 1500166 -161099764 + (CATA)n Simple_repeat Simple_repeat 4 67 0 23 0 0 0 chrX 1501663 1501686 -161098244 + AT_rich Low_complexity Low_complexity 1 23 0 1303 176 41 19 chrX 1501859 1502126 -161097804 - AluJo SINE Alu -16 296 24 991 184 0 0 chrX 1502163 1502321 -161097609 + FRAM SINE Alu 1 158 -8 662 231 83 29 chrX 1502597 1502893 -161097037 + MLT1C LTR MaLR 24 345 -122 547 215 83 49 chrX 1502906 1503111 -161096819 + MLT1D LTR MaLR 14 225 -280 440 250 58 32 chrX 1503211 1503367 -161096563 + MLT1A1 LTR MaLR 18 177 -328 2172 100 16 10 chrX 1503526 1503836 -161096094 - AluSx SINE Alu 0 312 1 775 105 8 16 chrX 1503836 1503960 -161095970 + MER41A LTR ERV1 432 554 0 1170 89 18 6 chrX 1504518 1504686 -161095244 - MER4B LTR ERV1 -9 601 432 515 155 10 0 chrX 1505067 1505170 -161094760 + CT-rich Low_complexity Low_complexity 2 105 0 897 223 5 11 chrX 1505172 1505360 -161094570 + MLT1A1 LTR MaLR 162 348 -17 454 174 11 0 chrX 1505750 1505842 -161094088 - L1PB4 LINE L1 -3 6153 6061 1328 234 64 39 chrX 1506437 1506872 -161093058 - MLT1C LTR MaLR 0 467 22 2119 125 36 22 chrX 1508591 1508950 -161090980 + THE1B LTR MaLR 1 364 0 1364 181 55 43 chrX 1508955 1509303 -161090627 + MLT1A2 LTR MaLR 23 374 0 588 237 55 127 chrX 1509307 1509687 -161090243 + MLT1C LTR MaLR 65 412 -55 2496 136 19 0 chrX 1509687 1510040 -161089890 - L1PB1 LINE L1 0 6151 5787 342 0 0 0 chrX 1510040 1510078 -161089852 + (TG)n Simple_repeat Simple_repeat 2 39 0 2496 136 19 0 chrX 1510078 1510137 -161089793 - L1PB1 LINE L1 -364 5787 5731 588 237 55 127 chrX 1510137 1510190 -161089740 + MLT1C LTR MaLR 412 467 0 2798 236 14 3 chrX 1510660 1511282 -161088648 + MER82 DNA MER2_type 24 652 -1 2257 94 0 13 chrX 1511931 1512230 -161087700 - AluSc SINE Alu -14 295 1 2042 130 20 0 chrX 1512230 1512522 -161087408 - AluSx SINE Alu -14 298 1 1974 171 14 8 chrX 1512547 1512910 -161087020 + MLT1A1 LTR MaLR 1 365 0 2566 71 0 0 chrX 1513611 1513919 -161086011 + AluY SINE Alu 1 308 -3 704 141 0 70 chrX 1514226 1514382 -161085548 - L1MB2 LINE L1 -7 6164 6020 2339 88 8 22 chrX 1514408 1514773 -161085157 - L1PB1 LINE L1 -80 6071 5712 759 172 4 146 chrX 1514824 1514996 -161084934 + MER82 DNA MER2_type 212 336 -317 1485 179 0 104 chrX 1514996 1515331 -161084599 - AluJo SINE Alu -2 300 1 759 172 4 146 chrX 1515331 1515419 -161084511 + MER82 DNA MER2_type 336 435 -218 213 213 0 0 chrX 1515426 1515473 -161084457 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 257 15 125 chrX 1515556 1515692 -161084238 - MIR3 SINE MIR -51 157 37 239 293 52 9 chrX 1516285 1516401 -161083529 - L1MB7 LINE L1 -15 6169 6049 256 61 0 0 chrX 1516401 1516434 -161083496 - U2 snRNA snRNA -155 33 1 1613 180 32 50 chrX 1516438 1516839 -161083091 - L1MB5 LINE L1 -114 6060 5667 472 313 166 22 chrX 1517034 1517389 -161082541 + L2 LINE L2 2906 3311 -2 293 138 0 17 chrX 1517843 1517901 -161082029 + (TCC)n Simple_repeat Simple_repeat 1 57 0 724 205 118 46 chrX 1517901 1518096 -161081834 - AluJo SINE Alu -18 294 86 1404 165 5 22 chrX 1518096 1518320 -161081610 - AluJo SINE Alu -92 220 1 207 0 0 0 chrX 1519890 1519913 -161080017 + (TG)n Simple_repeat Simple_repeat 1 23 0 240 59 0 0 chrX 1519915 1519949 -161079981 + (CA)n Simple_repeat Simple_repeat 1 34 0 1898 148 13 10 chrX 1520195 1520500 -161079430 - AluJo SINE Alu -6 306 1 2334 120 3 0 chrX 1520522 1520888 -161079042 - L1PB4 LINE L1 0 6156 5790 1045 122 6 0 chrX 1520890 1521046 -161078884 + THE1B LTR MaLR 5 161 -203 8257 57 15 1 chrX 1521046 1522916 -161077014 - L1PA6 LINE L1 -4 6150 4287 1845 43 30 0 chrX 1522917 1523152 -161076778 + L1PA6 LINE L1 4045 4286 -1860 1045 96 82 58 chrX 1523152 1523360 -161076570 + THE1B LTR MaLR 152 364 0 1196 83 5 21 chrX 1523360 1523553 -161076377 - L1PB4 LINE L1 -360 5796 5607 1110 214 32 70 chrX 1524206 1524269 -161075661 + MLT1A1 LTR MaLR 11 75 -290 1856 125 20 92 chrX 1524269 1524662 -161075268 + MLT1A1 LTR MaLR 1 365 0 1110 214 32 70 chrX 1524662 1524967 -161074963 + MLT1A1 LTR MaLR 75 365 0 1919 156 35 20 chrX 1525143 1525332 -161074598 + L1MA7 LINE L1 5889 6074 -217 2178 129 116 13 chrX 1525332 1525720 -161074210 - MSTA LTR MaLR 0 428 1 1919 156 35 20 chrX 1525720 1525927 -161074003 + L1MA7 LINE L1 6074 6291 0 813 147 27 7 chrX 1526399 1526549 -161073381 - L1MA4 LINE L1 -302 5998 5846 571 285 90 28 chrX 1526549 1526984 -161072946 + MER20B DNA MER1_type 292 753 -30 423 0 0 0 chrX 1527317 1527364 -161072566 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1741 175 0 11 chrX 1527367 1527652 -161072278 - AluJo SINE Alu -30 282 1 908 181 68 0 chrX 1527951 1528128 -161071802 - MER5A DNA MER1_type 0 189 1 3403 146 50 2 chrX 1528278 1528853 -161071077 - LTR26 LTR ERV1 0 603 1 637 193 8 0 chrX 1530226 1530345 -161069585 - L1MC1 LINE L1 0 6333 6214 336 153 0 0 chrX 1530352 1530411 -161069519 + L1MC1 LINE L1 5791 5849 -484 503 153 23 17 chrX 1530528 1530705 -161069225 + (TA)n Simple_repeat Simple_repeat 1 178 0 1026 196 117 56 chrX 1530764 1531106 -161068824 + MLT1A1 LTR MaLR 1 363 -2 201 270 95 0 chrX 1532164 1532227 -161067703 + MIR SINE MIR 102 170 -92 23 0 0 0 chrX 1532514 1532537 -161067393 + AT_rich Low_complexity Low_complexity 1 23 0 4949 129 19 8 chrX 1532538 1533372 -161066558 - L1PA15 LINE L1 -2 6163 5321 2172 140 0 6 chrX 1533372 1533686 -161066244 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 1533763 1533791 -161066139 + AT_rich Low_complexity Low_complexity 1 28 0 1744 184 7 3 chrX 1535761 1536066 -161063864 + AluJo SINE Alu 1 306 -6 2342 83 0 93 chrX 1536872 1537269 -161062661 - L1PA14 LINE L1 -2 6159 5800 1357 91 0 0 chrX 1537269 1537466 -161062464 + L1PA14 LINE L1 5604 5800 -361 340 172 0 0 chrX 1538162 1538220 -161061710 + MER63 DNA MER1_type 688 745 -315 1706 105 201 10 chrX 1539095 1539408 -161060522 + THE1C LTR MaLR 3 375 0 996 133 0 0 chrX 1539504 1539684 -161060246 + (TA)n Simple_repeat Simple_repeat 1 180 0 1732 170 10 14 chrX 1539686 1539974 -161059956 - AluJo SINE Alu -25 287 1 1459 130 40 0 chrX 1540299 1540552 -161059378 + L1MA5A LINE L1 6029 6291 -6 337 202 0 21 chrX 1540643 1540737 -161059193 + GA-rich Low_complexity Low_complexity 1 92 0 305 250 15 0 chrX 1540984 1541052 -161058878 + MER5B DNA MER1_type 1 69 -109 284 197 0 13 chrX 1541099 1541175 -161058755 + GA-rich Low_complexity Low_complexity 2 76 0 484 262 17 17 chrX 1541219 1541391 -161058539 + L1ME LINE L1 5476 5647 -474 28 91 0 0 chrX 1541671 1541748 -161058182 + AT_rich Low_complexity Low_complexity 1 77 0 690 187 12 6 chrX 1542033 1542204 -161057726 + CT-rich Low_complexity Low_complexity 1 172 0 194 340 78 43 chrX 1543036 1543177 -161056753 + MIR SINE MIR 45 190 -72 284 217 14 0 chrX 1543711 1543780 -161056150 - MLT1J LTR MaLR -342 169 100 253 228 33 11 chrX 1544490 1544582 -161055348 + (TA)n Simple_repeat Simple_repeat 2 95 0 494 215 20 108 chrX 1544991 1545186 -161054744 + MER5B DNA MER1_type 1 178 0 464 269 14 28 chrX 1545471 1545612 -161054318 + MIR SINE MIR 68 206 -56 24 0 0 0 chrX 1546212 1546236 -161053694 + AT_rich Low_complexity Low_complexity 1 24 0 408 191 0 0 chrX 1546726 1546815 -161053115 + (ATG)n Simple_repeat Simple_repeat 3 91 0 240 314 98 49 chrX 1547065 1547329 -161052601 - L2 LINE L2 -674 2640 2364 207 0 0 0 chrX 1547721 1547744 -161052186 + (GA)n Simple_repeat Simple_repeat 1 23 0 260 242 99 11 chrX 1549018 1549109 -161050821 - L2 LINE L2 -7 3306 3208 352 309 80 19 chrX 1550518 1550680 -161049250 - MIR SINE MIR -3 259 88 385 253 138 23 chrX 1550920 1551094 -161048836 + MLT1C LTR MaLR 1 194 -311 1007 77 0 0 chrX 1551096 1551226 -161048704 + AluSp/q SINE Alu 176 305 -8 413 174 114 8 chrX 1551253 1551385 -161048545 + MLT1C LTR MaLR 200 345 -122 1238 224 72 34 chrX 1551394 1551840 -161048090 + MLT1C LTR MaLR 5 467 0 1728 167 7 0 chrX 1552119 1552394 -161047536 - AluJo SINE Alu -16 296 20 1137 202 118 43 chrX 1552905 1553320 -161046610 - MLT1C LTR MaLR 0 467 22 662 221 159 22 chrX 1553350 1553626 -161046304 - MLT1D LTR MaLR -144 361 48 24 32 0 0 chrX 1553726 1553757 -161046173 + AT_rich Low_complexity Low_complexity 1 31 0 912 154 15 0 chrX 1553762 1553898 -161046032 - FRAM SINE Alu -30 146 9 1026 201 19 0 chrX 1554378 1554592 -161045338 + MER20 DNA MER1_type 1 218 -1 1218 104 41 2 chrX 1554623 1555093 -161044837 + (TCTA)n Simple_repeat Simple_repeat 1 488 0 428 172 48 0 chrX 1555106 1555251 -161044679 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 313 102 60 54 chrX 1555263 1555429 -161044501 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 933 194 37 23 chrX 1555479 1555695 -161044235 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chrX 1556755 1556776 -161043154 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 1556814 1556836 -161043094 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chrX 1556882 1556914 -161043016 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrX 1556980 1557001 -161042929 + AT_rich Low_complexity Low_complexity 1 21 0 1593 199 3 32 chrX 1560366 1560678 -161039252 - AluJo SINE Alu -8 304 2 2315 105 0 0 chrX 1561065 1561369 -161038561 - AluSx SINE Alu -8 304 1 1012 203 38 5 chrX 1562045 1562257 -161037673 - MER20 DNA MER1_type 0 219 1 439 206 6 40 chrX 1562259 1562434 -161037496 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 959 199 37 28 chrX 1562455 1562671 -161037259 - MER20 DNA MER1_type -1 218 1 487 187 6 42 chrX 1562673 1562839 -161037091 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 723 240 0 44 chrX 1562860 1563089 -161036841 - MER20 DNA MER1_type 0 219 1 858 43 43 7 chrX 1563091 1563231 -161036699 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 923 216 32 28 chrX 1563247 1563465 -161036465 - MER20 DNA MER1_type 0 219 1 2034 34 4 4 chrX 1563886 1564173 -161035757 + AluY SINE Alu 45 331 0 1598 158 37 4 chrX 1564182 1564307 -161035623 + AluJo SINE Alu 1 120 -192 195 42 0 0 chrX 1564307 1564331 -161035599 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1598 158 37 4 chrX 1564331 1564478 -161035452 + AluJo SINE Alu 120 282 -30 23 24 0 24 chrX 1564483 1564501 -161035429 + AT_rich Low_complexity Low_complexity 1 18 -22 2147 99 3 0 chrX 1564501 1564785 -161035145 - AluSx SINE Alu -27 285 1 23 24 0 24 chrX 1564785 1564807 -161035123 + AT_rich Low_complexity Low_complexity 18 40 0 1532 181 68 14 chrX 1565963 1566256 -161033674 - AluJo SINE Alu -3 309 1 4061 152 32 41 chrX 1566266 1567042 -161032888 + L1MA8 LINE L1 5404 6172 -119 1401 126 13 26 chrX 1567426 1567656 -161032274 + L1PA16 LINE L1 5940 6166 0 341 178 29 11 chrX 1573309 1573483 -161026447 + (TA)n Simple_repeat Simple_repeat 2 178 0 346 179 64 6 chrX 1573593 1573749 -161026181 + (TA)n Simple_repeat Simple_repeat 2 166 0 37 0 0 0 chrX 1573753 1573790 -161026140 + AT_rich Low_complexity Low_complexity 1 37 0 663 127 35 0 chrX 1573790 1573963 -161025967 + (TA)n Simple_repeat Simple_repeat 1 179 0 41 0 0 0 chrX 1573963 1574004 -161025926 + AT_rich Low_complexity Low_complexity 1 41 0 200 198 25 8 chrX 1574010 1574131 -161025799 + (TA)n Simple_repeat Simple_repeat 1 123 0 30 27 0 0 chrX 1574173 1574210 -161025720 + AT_rich Low_complexity Low_complexity 1 37 0 448 233 28 6 chrX 1574228 1574404 -161025526 + (TA)n Simple_repeat Simple_repeat 1 180 0 333 355 55 22 chrX 1574455 1574816 -161025114 + L2 LINE L2 2002 2374 -940 207 170 0 0 chrX 1575107 1575154 -161024776 + (CA)n Simple_repeat Simple_repeat 2 48 0 1884 204 77 33 chrX 1575157 1575676 -161024254 + LTR64 LTR ERVK 1 542 -16 273 333 0 0 chrX 1575677 1575761 -161024169 + (CA)n Simple_repeat Simple_repeat 1 84 0 225 289 56 44 chrX 1575862 1575952 -161023978 + MLT1I LTR MaLR 68 158 -251 197 383 39 22 chrX 1576037 1576217 -161023713 - L2 LINE L2 -312 3001 2819 410 181 16 16 chrX 1576558 1576685 -161023245 + GA-rich Low_complexity Low_complexity 1 127 0 936 122 6 11 chrX 1576685 1576865 -161023065 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 1028 145 14 5 chrX 1576867 1577086 -161022844 + GA-rich Low_complexity Low_complexity 1 216 -226 1028 101 17 11 chrX 1577086 1577265 -161022665 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1028 145 14 5 chrX 1577265 1577305 -161022625 + GA-rich Low_complexity Low_complexity 216 442 0 234 91 0 0 chrX 1578589 1578622 -161021308 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1574 172 19 23 chrX 1578707 1579015 -161020915 - AluJb SINE Alu -5 307 1 2541 46 3 0 chrX 1580051 1580353 -161019577 - AluY SINE Alu -8 303 1 2171 147 0 0 chrX 1580830 1581142 -161018788 + AluJb SINE Alu 1 312 0 1826 166 0 0 chrX 1581810 1582087 -161017843 - AluJb SINE Alu -31 281 5 2401 85 0 13 chrX 1582990 1583306 -161016624 - AluSx SINE Alu 0 312 1 1597 209 19 28 chrX 1583638 1583732 -161016198 + L1MB5 LINE L1 5810 5903 -271 3590 124 15 11 chrX 1583732 1584257 -161015673 + MER1A DNA MER1_type 1 527 0 1597 209 19 28 chrX 1584257 1584521 -161015409 + L1MB5 LINE L1 5903 6165 -9 308 306 10 0 chrX 1585147 1585245 -161014685 + MER20 DNA MER1_type 121 219 0 327 167 40 35 chrX 1585260 1585434 -161014496 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 185 351 90 13 chrX 1585434 1585821 -161014109 - L2 LINE L2 -593 2721 2305 389 286 11 0 chrX 1586047 1586138 -161013792 - MER20 DNA MER1_type -127 92 1 788 108 44 23 chrX 1586141 1586574 -161013356 + (TAGA)n Simple_repeat Simple_repeat 1 442 0 725 107 34 28 chrX 1586635 1586812 -161013118 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 185 0 40 0 chrX 1587050 1587075 -161012855 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2396 68 0 7 chrX 1587078 1587373 -161012557 - AluY SINE Alu -16 295 3 446 60 107 13 chrX 1588764 1589069 -161010861 + (TA)n Simple_repeat Simple_repeat 1 333 0 22 0 0 0 chrX 1589073 1589095 -161010835 + AT_rich Low_complexity Low_complexity 1 22 0 482 30 129 5 chrX 1589095 1589472 -161010458 + (TA)n Simple_repeat Simple_repeat 1 423 0 39 22 0 0 chrX 1589476 1589522 -161010408 + AT_rich Low_complexity Low_complexity 1 46 0 2617 101 64 3 chrX 1589797 1590185 -161009745 + L1PA8A LINE L1 5720 6131 0 304 22 22 22 chrX 1591957 1592003 -161007927 + (GA)n Simple_repeat Simple_repeat 2 47 0 24 0 0 0 chrX 1592021 1592045 -161007885 + AT_rich Low_complexity Low_complexity 1 24 0 2354 74 7 3 chrX 1592641 1592766 -161007164 + AluSp SINE Alu 1 124 -189 189 0 0 0 chrX 1592766 1592787 -161007143 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2354 74 7 3 chrX 1592787 1592960 -161006970 + AluSp SINE Alu 124 300 -13 224 316 0 0 chrX 1593802 1593859 -161006071 + G-rich Low_complexity Low_complexity 3 59 0 276 77 0 0 chrX 1595627 1595666 -161004264 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1664 163 7 3 chrX 1595666 1595948 -161003982 - AluSx SINE Alu -28 284 2 198 0 0 0 chrX 1597002 1597024 -161002906 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1831 157 0 20 chrX 1597068 1597368 -161002562 + AluJb SINE Alu 1 294 -18 749 216 22 11 chrX 1597655 1597840 -161002090 + L1MB5 LINE L1 5980 6166 -8 315 0 0 0 chrX 1598479 1598514 -161001416 + (TA)n Simple_repeat Simple_repeat 2 36 0 2000 142 0 0 chrX 1600137 1600419 -160999511 - AluSx SINE Alu -30 282 1 1026 191 32 18 chrX 1600519 1600739 -160999191 + L1MC1 LINE L1 6111 6333 0 3212 134 43 19 chrX 1600990 1601505 -160998425 - MER1A DNA MER1_type 0 527 1 1289 221 62 9 chrX 1602183 1602523 -160997407 - MLT1C LTR MaLR 0 467 110 1760 214 43 53 chrX 1602532 1603018 -160996912 + MLT1D LTR MaLR 25 505 0 228 187 0 28 chrX 1603296 1603403 -160996527 + (TTA)n Simple_repeat Simple_repeat 3 106 0 2232 99 0 17 chrX 1603960 1604252 -160995678 - AluSg SINE Alu -23 287 1 1837 184 16 72 chrX 1604336 1604411 -160995519 - L1MB5 LINE L1 -9 6165 6087 3546 140 0 19 chrX 1604411 1604948 -160994982 - MER1A DNA MER1_type 0 527 1 1837 184 16 72 chrX 1604948 1605317 -160994613 - L1MB5 LINE L1 -87 6087 5746 2334 100 0 3 chrX 1605347 1605646 -160994284 - AluSx SINE Alu -14 298 1 223 216 54 0 chrX 1605908 1605982 -160993948 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 3671 125 4 9 chrX 1606034 1606563 -160993367 + MER1A DNA MER1_type 2 527 0 191 155 42 14 chrX 1606564 1606635 -160993295 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 241 236 9 109 chrX 1607268 1607306 -160992624 - MLT1J LTR MaLR -183 328 288 2102 130 10 0 chrX 1607306 1607607 -160992323 + AluSx SINE Alu 1 304 -8 241 236 9 109 chrX 1607607 1607678 -160992252 - MLT1J LTR MaLR -223 288 230 882 234 84 96 chrX 1607814 1608314 -160991616 - MLT1D LTR MaLR -11 494 1 4750 118 34 71 chrX 1608374 1609187 -160990743 - LTR1 LTR ERV1 0 785 3 1893 108 82 0 chrX 1609332 1609601 -160990329 - AluSx SINE Alu -21 291 1 4167 151 39 3 chrX 1609720 1609974 -160989956 + L1PB4 LINE L1 5434 5677 -479 2177 111 0 0 chrX 1609974 1610271 -160989659 + AluSx SINE Alu 1 297 -15 4167 151 39 3 chrX 1610271 1610707 -160989223 + L1PB4 LINE L1 5677 6149 -7 247 336 17 8 chrX 1610979 1611098 -160988832 + MER117 DNA MER1_type 44 163 -34 2584 105 11 3 chrX 1611174 1611526 -160988404 - THE1A LTR MaLR 0 355 1 1975 148 0 0 chrX 1611758 1612069 -160987861 - AluJo SINE Alu 0 311 1 26 50 0 0 chrX 1612205 1612245 -160987685 + AT_rich Low_complexity Low_complexity 1 40 0 233 188 68 23 chrX 1612252 1612385 -160987545 + (TA)n Simple_repeat Simple_repeat 2 140 0 * 308 240 29 29 chrX 1612353 1612392 -160987538 + (TTATA)n Simple_repeat Simple_repeat 1 39 -459 1916 109 64 0 chrX 1612392 1612658 -160987272 + AluSg SINE Alu 8 290 -20 308 240 29 29 chrX 1612658 1612851 -160987079 + (TTATA)n Simple_repeat Simple_repeat 38 498 0 23 33 0 0 chrX 1612864 1612894 -160987036 + AT_rich Low_complexity Low_complexity 1 30 0 333 261 9 9 chrX 1613305 1613416 -160986514 - LTR16C LTR ERVL -10 481 371 636 178 7 105 chrX 1613875 1614027 -160985903 - MLT1C LTR MaLR -2 503 367 379 162 15 0 chrX 1614027 1614095 -160985835 + L1PA16 LINE L1 6086 6154 -12 535 305 24 6 chrX 1614307 1614471 -160985459 - MLT1C LTR MaLR -148 478 312 1923 117 0 55 chrX 1616416 1616725 -160983205 - AluSx SINE Alu -20 292 1 274 229 0 0 chrX 1616753 1616814 -160983116 - MLT1E2 LTR MaLR -25 601 541 1334 133 0 0 chrX 1616829 1617024 -160982906 - L1MA2 LINE L1 -2 6302 6108 920 250 41 35 chrX 1617033 1617349 -160982581 - MLT1C LTR MaLR -149 318 1 764 236 94 34 chrX 1617356 1617623 -160982307 - MLT1C LTR MaLR -119 348 66 1809 141 7 11 chrX 1618093 1618412 -160981518 + AluJb SINE Alu 1 318 0 254 322 110 44 chrX 1619136 1619363 -160980567 - L3 LINE CR1 -81 1496 1255 1905 180 17 6 chrX 1619454 1619815 -160980115 + MLT1A1 LTR MaLR 1 365 0 704 222 20 7 chrX 1619885 1620038 -160979892 + MLT1A1 LTR MaLR 211 365 0 1048 270 118 3 chrX 1620303 1620625 -160979305 + MLT1D LTR MaLR 135 493 -12 286 273 268 17 chrX 1620676 1620907 -160979023 + L2 LINE L2 2926 3214 -99 198 0 0 0 chrX 1620934 1620956 -160978974 + (TTAGGG)n Simple_repeat Simple_repeat 2 23 0 2667 85 48 20 chrX 1621190 1621544 -160978386 - THE1B LTR MaLR 0 364 1 300 318 30 15 chrX 1621607 1621739 -160978191 - MER5B DNA MER1_type -18 160 27 226 337 20 20 chrX 1622669 1622770 -160977160 + MER5B DNA MER1_type 55 155 -23 320 88 18 0 chrX 1623057 1623114 -160976816 + (CCCTAA)n Simple_repeat Simple_repeat 2 59 0 212 288 134 40 chrX 1623231 1623417 -160976513 - L2 LINE L2 -217 3096 2879 214 244 0 0 chrX 1623689 1623730 -160976200 + polypyrimidine Low_complexity Low_complexity 2 42 0 1029 208 5 15 chrX 1623809 1624011 -160975919 - MLT1D LTR MaLR 0 505 306 3414 128 78 15 chrX 1624014 1624601 -160975329 + MER4B LTR ERV1 1 606 -4 595 263 53 70 chrX 1624608 1624893 -160975037 - MLT1D LTR MaLR -202 303 24 2174 114 0 3 chrX 1625017 1625314 -160974616 + AluSx SINE Alu 1 296 -16 26 0 0 0 chrX 1625322 1625348 -160974582 + AT_rich Low_complexity Low_complexity 1 26 0 915 183 0 0 chrX 1625397 1625577 -160974353 + (TG)n Simple_repeat Simple_repeat 1 180 0 737 212 6 0 chrX 1625588 1625767 -160974163 + (TG)n Simple_repeat Simple_repeat 1 180 0 1371 214 66 84 chrX 1626760 1627314 -160972616 - MLT1F1 LTR MaLR -7 560 14 1063 187 24 3 chrX 1627371 1627636 -160972294 + L1P5 LINE L1 5196 5470 -686 296 139 0 0 chrX 1627636 1627679 -160972251 - Alu SINE Alu -11 289 247 1731 194 7 0 chrX 1628170 1628469 -160971461 + AluJo SINE Alu 1 301 -11 1880 118 19 166 chrX 1628881 1629062 -160970868 + Tigger2 DNA MER2_type 2 208 -2510 2436 77 0 7 chrX 1629062 1629361 -160970569 + AluY SINE Alu 1 297 -14 1880 118 19 166 chrX 1629361 1629481 -160970449 + Tigger2 DNA MER2_type 208 344 -2374 2122 124 20 0 chrX 1629481 1629779 -160970151 + AluSx SINE Alu 1 304 -8 1880 118 19 166 chrX 1629779 1629906 -160970024 + Tigger2 DNA MER2_type 344 488 -2230 1813 165 3 7 chrX 1629906 1630203 -160969727 - AluSx SINE Alu -16 296 1 1880 118 19 166 chrX 1630203 1630278 -160969652 + Tigger2 DNA MER2_type 488 2718 0 188 250 10 0 chrX 1630278 1630374 -160969556 + (TA)n Simple_repeat Simple_repeat 2 98 0 535 222 6 6 chrX 1630393 1630573 -160969357 + (TA)n Simple_repeat Simple_repeat 1 180 0 272 263 25 0 chrX 1630573 1630653 -160969277 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 1810 210 2 20 chrX 1630658 1631033 -160968897 - MLT2D LTR ERVL -43 477 7 3717 189 81 11 chrX 1631322 1632054 -160967876 + LTR39 LTR ERV1 1 783 0 257 216 0 27 chrX 1632545 1632619 -160967311 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 219 146 0 0 chrX 1632818 1632859 -160967071 + (CATA)n Simple_repeat Simple_repeat 3 43 0 218 141 65 11 chrX 1632898 1632990 -160966940 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 568 162 50 7 chrX 1633029 1633761 -160966169 + (TAGA)n Simple_repeat Simple_repeat 1 763 0 243 141 47 0 chrX 1633949 1634013 -160965917 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2001 133 7 17 chrX 1634606 1634907 -160965023 - AluSx SINE Alu -14 298 1 518 227 60 38 chrX 1634957 1635142 -160964788 - MER53 DNA DNA 0 189 1 915 192 2 0 chrX 1635224 1635685 -160964245 + (TG)n Simple_repeat Simple_repeat 1 462 0 476 165 49 13 chrX 1635709 1636100 -160963830 + (TCTA)n Simple_repeat Simple_repeat 1 405 0 198 103 0 0 chrX 1636139 1636168 -160963762 + (TATG)n Simple_repeat Simple_repeat 3 31 0 448 211 21 11 chrX 1637773 1637868 -160962062 - MER5A DNA MER1_type -80 109 14 378 78 0 0 chrX 1638270 1638321 -160961609 + Alu SINE Alu 1 51 -250 3356 129 20 2 chrX 1638322 1638817 -160961113 + MER1A DNA MER1_type 26 529 0 1903 151 20 0 chrX 1638960 1639252 -160960678 - AluJb SINE Alu -14 298 1 2433 92 3 0 chrX 1639536 1639842 -160960088 + AluSp SINE Alu 6 312 -1 3027 115 18 29 chrX 1640484 1640935 -160958995 + L1PA16 LINE L1 5712 6157 -9 203 317 49 12 chrX 1641134 1641216 -160958714 + MIR SINE MIR 7 91 -171 258 56 0 0 chrX 1642041 1642077 -160957853 + (TG)n Simple_repeat Simple_repeat 2 37 0 2755 132 2 76 chrX 1642332 1642377 -160957553 + MSTC LTR MaLR 1 48 -380 1692 164 7 18 chrX 1642377 1642658 -160957272 + AluJo SINE Alu 5 282 -30 2755 132 2 76 chrX 1642658 1642678 -160957252 + MSTC LTR MaLR 48 68 -360 183 42 0 0 chrX 1642678 1642702 -160957228 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2755 132 2 76 chrX 1642702 1643097 -160956833 + MSTC LTR MaLR 68 428 0 22 56 0 0 chrX 1643109 1643145 -160956785 + AT_rich Low_complexity Low_complexity 1 36 0 1564 170 0 53 chrX 1643228 1643528 -160956402 - AluJo SINE Alu -19 293 10 2675 115 66 17 chrX 1644050 1644458 -160955472 - MSTA LTR MaLR 0 428 1 4105 142 3 14 chrX 1644692 1645331 -160954599 - L1PB4 LINE L1 -2 6154 5523 2474 137 3 7 chrX 1645536 1645928 -160954002 + MLT1B LTR MaLR 1 467 0 1385 164 4 0 chrX 1645929 1646160 -160953770 + MLT1B LTR MaLR 159 390 0 2687 69 33 3 chrX 1646502 1646864 -160953066 + MER41A LTR ERV1 1 373 -181 988 109 0 0 chrX 1646855 1646993 -160952937 + MER41B LTR ERV1 498 635 0 * 1963 107 0 18 chrX 1648076 1648357 -160951573 + MER4E LTR ERV1 1 276 -503 2521 85 3 23 chrX 1648363 1648715 -160951215 + MER4E LTR ERV1 435 779 0 1316 98 0 6 chrX 1648900 1649073 -160950857 - LTR8 LTR ERV1 0 691 520 593 197 88 0 chrX 1649079 1649216 -160950714 - L1MA10 LINE L1 -7 6327 6179 642 121 0 0 chrX 1649222 1649305 -160950625 - AluSg/x SINE Alu -14 296 214 2330 180 21 87 chrX 1649306 1649879 -160950051 - LTR8 LTR ERV1 -156 535 1 431 301 59 34 chrX 1649989 1650225 -160949705 + L2 LINE L2 2113 2354 -960 2184 195 47 0 chrX 1650226 1650631 -160949299 + MSTB1 LTR MaLR 9 432 0 303 28 0 0 chrX 1650876 1650912 -160949018 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2100 72 0 15 chrX 1650923 1651187 -160948743 - AluSq SINE Alu -36 277 18 293 312 32 19 chrX 1651449 1651606 -160948324 + L2 LINE L2 3113 3271 -42 27 0 0 0 chrX 1653936 1653963 -160945967 + AT_rich Low_complexity Low_complexity 1 27 0 241 202 11 45 chrX 1654050 1654139 -160945791 - L1MC4 LINE L1 -1342 6700 6615 2246 155 31 0 chrX 1654173 1654527 -160945403 + MLT1A1 LTR MaLR 1 365 0 283 192 0 0 chrX 1655694 1655746 -160944184 - MLT1B LTR MaLR 0 390 339 24 0 0 0 chrX 1855859 1855883 -160744047 + AT_rich Low_complexity Low_complexity 1 24 0 659 114 20 7 chrX 1856123 1856272 -160743658 + (TG)n Simple_repeat Simple_repeat 2 152 0 592 250 111 34 chrX 1856579 1856787 -160743143 - MER58A DNA MER1_type 0 224 1 1700 175 6 16 chrX 1856862 1857176 -160742754 - AluJo SINE Alu -1 311 1 2161 95 11 0 chrX 1857765 1858049 -160741881 - AluSx SINE Alu -17 295 9 2916 157 15 26 chrX 1858058 1858429 -160741501 - L1PB4 LINE L1 -117 6039 5674 1885 128 3 34 chrX 1858429 1858725 -160741205 - AluSx SINE Alu -23 289 3 2916 157 15 26 chrX 1858725 1858900 -160741030 - L1PB4 LINE L1 -482 5674 5499 1597 181 0 11 chrX 1859107 1859389 -160740541 - AluJo SINE Alu -10 302 24 24 53 0 0 chrX 1859425 1859463 -160740467 + AT_rich Low_complexity Low_complexity 1 38 0 680 326 107 32 chrX 1859504 1860180 -160739750 + L2 LINE L2 2584 3309 -4 21 36 0 0 chrX 1860187 1860215 -160739715 + AT_rich Low_complexity Low_complexity 1 28 0 1380 239 48 58 chrX 1860365 1860498 -160739432 + MLT1D LTR MaLR 27 160 -345 185 65 32 0 chrX 1860498 1860529 -160739401 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2012 137 0 0 chrX 1860529 1860807 -160739123 - AluSx SINE Alu -32 280 3 1380 239 48 58 chrX 1860807 1860901 -160739029 + MLT1D LTR MaLR 159 252 -253 2628 98 5 11 chrX 1860901 1861278 -160738652 - THE1C LTR MaLR 0 375 1 1380 239 48 58 chrX 1861278 1861530 -160738400 + MLT1D LTR MaLR 252 503 -2 1834 178 3 7 chrX 1861534 1861832 -160738098 - AluJo SINE Alu -15 297 1 2157 129 0 0 chrX 1862396 1862698 -160737232 - AluSx SINE Alu -10 302 1 2019 207 130 2 chrX 1862785 1863230 -160736700 - MLT2B1 LTR ERVL -15 505 4 1018 238 5 0 chrX 1863457 1863667 -160736263 - MER20 DNA MER1_type -1 218 8 287 314 10 10 chrX 1863976 1864078 -160735852 + GA-rich Low_complexity Low_complexity 2 103 0 231 59 39 20 chrX 1864213 1864264 -160735666 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2215 115 0 3 chrX 1864897 1865202 -160734728 - AluSx SINE Alu -8 304 1 1093 229 30 30 chrX 1866152 1866454 -160733476 + MLT2C1 LTR ERVL 5 306 -91 790 157 19 12 chrX 1866491 1866751 -160733179 + (TAGA)n Simple_repeat Simple_repeat 1 261 0 305 96 0 39 chrX 1866777 1866829 -160733101 + MLT2C1 LTR ERVL 465 514 -6 245 151 19 0 chrX 1868046 1868099 -160731831 + (TA)n Simple_repeat Simple_repeat 1 54 0 23 33 0 0 chrX 1868185 1868215 -160731715 + AT_rich Low_complexity Low_complexity 1 30 0 2010 129 7 13 chrX 1868696 1868999 -160730931 + AluSx SINE Alu 2 302 -10 369 287 100 31 chrX 1869251 1869610 -160730320 + LTR16A LTR ERVL 51 438 -12 639 165 0 0 chrX 1869700 1869809 -160730121 - FRAM SINE Alu -5 171 63 2084 174 7 68 chrX 1869810 1870252 -160729678 + LTR9 LTR ERV1 1 415 -197 1426 149 0 28 chrX 1870358 1870613 -160729317 - L1MB3 LINE L1 -224 5959 5712 828 188 35 15 chrX 1870610 1870807 -160729123 + L1 LINE L1 4952 5152 -994 * 2095 141 7 0 chrX 1871492 1871796 -160728134 - AluSx SINE Alu -6 306 1 1291 176 231 50 chrX 1871847 1872412 -160727518 - LTR48 LTR ERV1 0 644 33 2026 137 0 7 chrX 1872412 1872704 -160727226 - AluSx SINE Alu -22 290 1 1291 176 231 50 chrX 1872704 1872745 -160727185 - LTR48 LTR ERV1 -611 33 1 26 30 0 0 chrX 1873300 1873333 -160726597 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chrX 1873761 1873791 -160726139 + AT_rich Low_complexity Low_complexity 1 30 0 1880 130 89 11 chrX 1874008 1874355 -160725575 + THE1C LTR MaLR 2 375 0 833 119 0 0 chrX 1874467 1874593 -160725337 + L1MA2 LINE L1 6173 6298 -6 22 0 0 0 chrX 1875372 1875394 -160724536 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 1875550 1875577 -160724353 + AT_rich Low_complexity Low_complexity 1 27 0 1188 259 62 109 chrX 1875904 1876635 -160723295 - L1ME1 LINE L1 -90 6076 5381 478 79 13 71 chrX 1876651 1876894 -160723036 + (TA)n Simple_repeat Simple_repeat 1 228 0 1236 217 14 7 chrX 1876903 1877179 -160722751 - AluSx SINE Alu -34 278 1 588 206 9 75 chrX 1877180 1877408 -160722522 - L1ME1 LINE L1 -748 5398 5186 1779 162 0 11 chrX 1877512 1877820 -160722110 + AluSx SINE Alu 1 305 0 395 285 20 0 chrX 1878874 1879025 -160720905 + (TA)n Simple_repeat Simple_repeat 1 154 0 345 160 28 0 chrX 1879090 1879196 -160720734 + (TA)n Simple_repeat Simple_repeat 1 109 0 446 228 7 14 chrX 1879239 1879539 -160720391 + (TA)n Simple_repeat Simple_repeat 1 297 0 512 212 15 11 chrX 1879553 1879819 -160720111 + (TA)n Simple_repeat Simple_repeat 1 267 0 22 0 0 0 chrX 1880816 1880838 -160719092 + AT_rich Low_complexity Low_complexity 1 22 0 2751 163 19 67 chrX 1880838 1881295 -160718635 - L1MA8 LINE L1 -4 6287 5868 2093 122 23 0 chrX 1881295 1881598 -160718332 - AluSx SINE Alu -2 310 1 2751 163 19 67 chrX 1881598 1881780 -160718150 - L1MA8 LINE L1 -423 5868 5679 260 98 49 0 chrX 1882552 1882593 -160717337 - MER116 DNA Mariner -2 78 36 635 104 104 75 chrX 1883234 1883325 -160716605 - L1MA7 LINE L1 -4 6287 6200 1728 159 52 0 chrX 1883325 1883445 -160716485 + AluSx SINE Alu 1 113 -218 366 23 0 0 chrX 1883445 1883488 -160716442 + (CA)n Simple_repeat Simple_repeat 2 44 0 1728 159 52 0 chrX 1883488 1883684 -160716246 + AluSx SINE Alu 113 331 0 635 104 104 75 chrX 1883684 1883764 -160716166 - L1MA7 LINE L1 -91 6200 6110 511 113 0 0 chrX 1883934 1884014 -160715916 + MADE1 DNA Mariner 1 80 0 1089 197 0 0 chrX 1884621 1884819 -160715111 - AluJb SINE Alu -25 287 90 2218 93 7 0 chrX 1884872 1885162 -160714768 + AluSx SINE Alu 1 292 -20 491 174 0 1 chrX 1885213 1885307 -160714623 + L1MA6 LINE L1 6023 6115 -185 2584 146 19 60 chrX 1885506 1885546 -160714384 - L1MA9 LINE L1 -22 6290 6250 1695 86 0 13 chrX 1885546 1885779 -160714151 + MER30 DNA MER1_type 1 230 0 2584 146 19 60 chrX 1885779 1886259 -160713671 - L1MA9 LINE L1 -62 6250 5791 1032 103 0 0 chrX 1886476 1886621 -160713309 + L1MC1 LINE L1 6034 6178 -155 374 21 21 0 chrX 1886623 1886670 -160713260 + L1MC1 LINE L1 6275 6322 -11 1865 137 0 46 chrX 1886673 1886979 -160712951 + AluJo SINE Alu 3 294 -18 32 57 0 0 chrX 1886985 1887038 -160712892 + AT_rich Low_complexity Low_complexity 1 53 0 1458 187 14 18 chrX 1888166 1888502 -160711428 + AluJo SINE Alu 1 335 0 236 309 10 21 chrX 1888518 1888615 -160711315 + L1MC4 LINE L1 7924 8019 -23 438 313 117 20 chrX 1888695 1889047 -160710883 + L1ME3A LINE L1 5505 5890 -280 328 348 22 47 chrX 1889137 1889459 -160710471 - ERVL LTR ERVL -3967 1797 1484 917 202 6 14 chrX 1889496 1889711 -160710219 + L1MA8 LINE L1 5741 5949 -231 441 298 28 23 chrX 1890470 1890685 -160709245 + L1ME3A LINE L1 5691 5906 -264 240 86 0 0 chrX 1890903 1890938 -160708992 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 346 73 94 10 chrX 1890938 1891034 -160708896 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 6910 59 0 0 chrX 1891307 1892799 -160707131 - L1PA6 LINE L1 0 6154 4650 1095 161 44 5 chrX 1894264 1894467 -160705463 - MLT1B LTR MaLR 0 390 180 1897 193 11 8 chrX 1894467 1894854 -160705076 - MLT1B LTR MaLR -3 393 1 2554 154 43 4 chrX 1894938 1895404 -160704526 - MER31A LTR ERV1 0 485 2 31 58 0 0 chrX 1896298 1896350 -160703580 + AT_rich Low_complexity Low_complexity 1 52 0 869 191 13 93 chrX 1896911 1897147 -160702783 + MER20 DNA MER1_type 2 218 -1 312 253 13 0 chrX 1897181 1897260 -160702670 - L1ME2 LINE L1 -9 6155 6076 1642 212 0 0 chrX 1897260 1897566 -160702364 + AluJo SINE Alu 2 307 0 257 324 15 0 chrX 1897567 1897635 -160702295 + HERV16 LTR ERVL 1753 1821 -3175 323 268 9 71 chrX 1897697 1897809 -160702121 + AluJo SINE Alu 58 162 -140 516 95 0 0 chrX 1897978 1898062 -160701868 + (TA)n Simple_repeat Simple_repeat 2 85 0 1645 202 22 0 chrX 1898147 1898459 -160701471 + LTR57 LTR ERVL 91 409 -2 339 324 61 0 chrX 1898467 1898615 -160701315 + HERV16 LTR ERVL 1237 1393 -3603 4475 194 30 17 chrX 1898619 1900310 -160699620 + L1MA9 LINE L1 4525 6233 -79 2392 131 3 3 chrX 1900310 1900662 -160699268 + THE1B LTR MaLR 1 352 -12 232 299 0 0 chrX 1900688 1900775 -160699155 + L1MC4 LINE L1 6614 6700 -1342 4396 141 15 14 chrX 1901271 1901987 -160697943 + LTR62 LTR ERVK 1 717 -2 271 190 63 0 chrX 1902204 1902283 -160697647 + L1M4 LINE L1 2329 2412 -3734 1109 205 26 26 chrX 1903354 1903583 -160696347 + Tigger5 DNA MER2_type 2 230 -2093 1130 185 35 9 chrX 1903587 1903814 -160696116 + Tigger5 DNA MER2_type 2091 2323 0 236 91 23 0 chrX 1903878 1903922 -160696008 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 96 0 0 chrX 1903991 1904064 -160695866 + AT_rich Low_complexity Low_complexity 1 73 0 1789 178 77 30 chrX 1904160 1904564 -160695366 + L1MA4 LINE L1 5878 6300 0 46 33 0 0 chrX 1904648 1904708 -160695222 + AT_rich Low_complexity Low_complexity 1 60 0 394 200 32 42 chrX 1905085 1905180 -160694750 + MIR SINE MIR 28 121 -141 2063 139 3 3 chrX 1905290 1905600 -160694330 - AluSx SINE Alu -2 310 1 217 318 85 23 chrX 1906301 1906430 -160693500 - MIR SINE MIR -67 195 59 3059 152 9 28 chrX 1907023 1907589 -160692341 - MER4B LTR ERV1 -55 555 1 197 374 22 11 chrX 1907649 1907740 -160692190 - MIR SINE MIR -150 112 21 3555 49 0 7 chrX 1907838 1908289 -160691641 + LTR7 LTR ERV1 1 448 -2 18853 91 30 7 chrX 1908291 1911209 -160688721 + HERVH LTR ERV1 1 2987 -4726 824 142 20 0 chrX 1911203 1911351 -160688579 + HERVH LTR ERV1 3140 3290 -4423 * 2357 134 7 14 chrX 1911341 1911775 -160688155 + HERVH LTR ERV1 3492 3922 -3791 3264 150 17 2 chrX 1912004 1912523 -160687407 - MER1A DNA MER1_type 0 527 1 2727 179 33 0 chrX 1913419 1913966 -160685964 + L1MB7 LINE L1 5617 6181 -3 21 57 0 0 chrX 1914012 1914047 -160685883 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chrX 1916034 1916064 -160683866 + AT_rich Low_complexity Low_complexity 1 30 0 4319 131 16 12 chrX 1916064 1916834 -160683096 - L1PB3 LINE L1 -1 6153 5381 31 0 0 0 chrX 1916918 1916949 -160682981 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chrX 1917511 1917540 -160682390 + AT_rich Low_complexity Low_complexity 1 29 0 911 43 0 0 chrX 1917884 1918001 -160681929 + L1PA4 LINE L1 6039 6155 0 1964 129 7 7 chrX 1919171 1919473 -160680457 + AluJb SINE Alu 1 302 -10 310 222 46 137 chrX 1921371 1921524 -160678406 + MER5B DNA MER1_type 2 140 -38 23 78 0 0 chrX 1922023 1922074 -160677856 + GC_rich Low_complexity Low_complexity 1 51 0 192 89 44 22 chrX 1922170 1922215 -160677715 + GA-rich Low_complexity Low_complexity 2 47 0 2034 165 33 31 chrX 1922321 1922869 -160677061 - MLT2A2 LTR ERVL -1 553 1 186 304 47 108 chrX 1922976 1923190 -160676740 + L2 LINE L2 2214 2414 -900 1477 192 35 3 chrX 1923200 1923539 -160676391 - L1MA9 LINE L1 -170 6142 5793 905 182 0 87 chrX 1923558 1923789 -160676141 + MER2 DNA MER2_type 1 211 -134 37 39 0 0 chrX 1923794 1923845 -160676085 + AT_rich Low_complexity Low_complexity 1 51 0 1001 179 0 0 chrX 1923895 1924079 -160675851 - L1MA9 LINE L1 -498 5793 5610 724 201 34 0 chrX 1924079 1924098 -160675832 + L1MA9 LINE L1 6128 6145 -167 186 43 0 0 chrX 1924098 1924121 -160675809 + (CA)n Simple_repeat Simple_repeat 2 24 0 724 201 34 0 chrX 1924121 1924277 -160675653 + L1MA9 LINE L1 6145 6312 0 333 314 47 35 chrX 1924470 1924642 -160675288 + L2 LINE L2 2619 2792 -522 1992 116 18 3 chrX 1924781 1925066 -160674864 + AluSp SINE Alu 17 305 -8 21 0 0 0 chrX 1925651 1925672 -160674258 + AT_rich Low_complexity Low_complexity 1 21 0 2160 130 3 0 chrX 1925842 1926142 -160673788 + AluSx SINE Alu 1 301 -11 2125 115 0 3 chrX 1926146 1926434 -160673496 + AluSx SINE Alu 1 287 -25 27 62 0 0 chrX 1927384 1927432 -160672498 + AT_rich Low_complexity Low_complexity 1 48 0 25 51 0 0 chrX 1927891 1927930 -160672000 + AT_rich Low_complexity Low_complexity 1 39 0 390 176 0 0 chrX 1927981 1928049 -160671881 - L1M2 LINE L1 -614 5677 5610 2062 133 3 0 chrX 1928234 1928536 -160671394 + AluY SINE Alu 1 303 -8 429 282 46 24 chrX 1929228 1929459 -160670471 - L1MC4 LINE L1 -947 6946 6623 22 35 0 0 chrX 1929524 1929553 -160670377 + AT_rich Low_complexity Low_complexity 1 29 0 266 202 83 0 chrX 1929556 1929640 -160670290 - L1MA9 LINE L1 -24 6288 6198 1995 146 3 0 chrX 1930376 1930664 -160669266 + AluSx SINE Alu 1 289 -23 1700 212 68 27 chrX 1930665 1931103 -160668827 - MLT2B1 LTR ERVL -64 456 1 234 284 83 46 chrX 1932136 1932318 -160667612 - MIR SINE MIR -60 202 16 23 0 0 0 chrX 1932553 1932576 -160667354 + AT_rich Low_complexity Low_complexity 1 23 0 223 150 50 12 chrX 1932603 1932683 -160667247 + GA-rich Low_complexity Low_complexity 1 83 0 2506 125 9 35 chrX 1933640 1934072 -160665858 + MER4B LTR ERV1 1 421 -189 3503 49 2 7 chrX 1934072 1934521 -160665409 - LTR7 LTR ERV1 -3 447 1 1495 57 40 20 chrX 1934521 1934768 -160665162 - HERVH LTR ERV1 0 7713 7462 2276 101 13 7 chrX 1935555 1935863 -160664067 - AluSx SINE Alu -2 310 1 664 158 23 0 chrX 1935996 1936129 -160663801 - L1PB4 LINE L1 0 6156 6021 2313 79 5 6 chrX 1936246 1936647 -160663283 - L1PA8A LINE L1 -541 5590 5190 325 191 0 0 chrX 1936647 1936715 -160663215 - L1MA7 LINE L1 -180 6111 6044 307 117 90 7 chrX 1936868 1937013 -160662917 + (TA)n Simple_repeat Simple_repeat 1 157 0 506 155 46 20 chrX 1937094 1937533 -160662397 + (TA)n Simple_repeat Simple_repeat 1 450 0 201 241 17 17 chrX 1937547 1937605 -160662325 + (TA)n Simple_repeat Simple_repeat 1 58 0 1152 226 39 77 chrX 1937979 1938418 -160661512 + MLT2B3 LTR ERVL 133 554 0 240 182 0 0 chrX 1938427 1938471 -160661459 + MLT1D LTR MaLR 2 45 -422 1729 70 8 0 chrX 1938535 1938777 -160661153 - L1PA13 LINE L1 -259 5904 5661 1067 228 231 3 chrX 1938779 1939126 -160660804 + MLT1D LTR MaLR 73 498 -7 4372 153 7 15 chrX 1940182 1940993 -160658937 - L1MA4 LINE L1 0 6300 5496 1087 294 122 46 chrX 1941518 1942298 -160657632 + Charlie2b DNA MER1_type 344 1182 -1600 837 275 67 50 chrX 1942760 1943255 -160656675 + L1MC4 LINE L1 6572 7074 -968 220 252 19 0 chrX 1943267 1943374 -160656556 + (TA)n Simple_repeat Simple_repeat 2 110 0 * 300 154 0 0 chrX 1943355 1943407 -160656523 + (TG)n Simple_repeat Simple_repeat 1 52 0 2870 134 2 29 chrX 1943491 1943982 -160655948 + MER1A DNA MER1_type 52 529 0 2478 148 2 0 chrX 1944046 1944451 -160655479 - L1PA15 LINE L1 -3 6162 5757 5094 99 17 0 chrX 1944476 1945235 -160654695 - L1PA11 LINE L1 -2 6172 5401 231 314 58 7 chrX 1945233 1945370 -160654560 + L1MC4a LINE L1 7172 7315 -493 * 3069 141 20 0 chrX 1945584 1946072 -160653858 + MER1A DNA MER1_type 32 529 0 379 390 30 4 chrX 1946700 1946969 -160652961 - L2 LINE L2 -337 2977 2702 895 166 213 68 chrX 1947041 1947124 -160652806 - MER44D DNA MER2_type -1882 609 539 479 17 17 0 chrX 1947124 1947184 -160652746 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 895 166 213 68 chrX 1947184 1947396 -160652534 - MER44D DNA MER2_type -1952 539 1 1600 89 66 27 chrX 1947420 1947678 -160652252 - THE1B LTR MaLR -96 268 1 1209 148 0 0 chrX 1947719 1947922 -160652008 + L1MA2 LINE L1 6102 6304 0 845 264 63 48 chrX 1947939 1948402 -160651528 + MLT1D LTR MaLR 27 496 -9 555 124 21 10 chrX 1948801 1948898 -160651032 + MER4A LTR ERV1 1 98 -566 292 104 21 0 chrX 1948898 1948946 -160650984 + MER4A LTR ERV1 261 309 -355 2771 63 3 30 chrX 1948946 1949311 -160650619 - THE1A LTR MaLR 0 355 1 1831 127 0 23 chrX 1949320 1949620 -160650310 + MER4A LTR ERV1 372 664 0 317 82 20 0 chrX 1950438 1950487 -160649443 + (TC)n Simple_repeat Simple_repeat 2 51 0 649 69 10 10 chrX 1950572 1950673 -160649257 + (TC)n Simple_repeat Simple_repeat 2 102 0 637 176 0 37 chrX 1951608 1951795 -160648135 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chrX 1951873 1951895 -160648035 + AT_rich Low_complexity Low_complexity 1 22 0 344 290 0 24 chrX 1952801 1952970 -160646960 + MER53 DNA DNA 2 166 -23 666 233 0 0 chrX 1953664 1953844 -160646086 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 209 327 6 0 chrX 1953855 1954011 -160645919 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 645 230 0 0 chrX 1954052 1954230 -160645700 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 208 232 11 32 chrX 1954314 1954409 -160645521 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 24 0 0 0 chrX 1954943 1954967 -160644963 + AT_rich Low_complexity Low_complexity 1 24 0 273 203 43 0 chrX 1954967 1955078 -160644852 + GA-rich Low_complexity Low_complexity 1 115 0 1772 175 3 10 chrX 1955129 1955432 -160644498 - AluJb SINE Alu -11 301 1 1976 119 55 7 chrX 1956616 1956670 -160643260 - AluSx SINE Alu -5 307 257 189 74 0 0 chrX 1956670 1956697 -160643233 + (GAGTG)n Simple_repeat Simple_repeat 1 27 0 1976 119 55 7 chrX 1956697 1956935 -160642995 - AluSx SINE Alu -55 257 1 190 172 0 35 chrX 1957009 1957067 -160642863 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chrX 1957074 1957096 -160642834 + AT_rich Low_complexity Low_complexity 1 22 0 1234 133 19 6 chrX 1957454 1957692 -160642238 + L1MA9 LINE L1 5871 6100 -83 304 188 56 44 chrX 1957699 1957859 -160642071 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 278 221 37 49 chrX 1958049 1958212 -160641718 + (TTATA)n Simple_repeat Simple_repeat 1 161 0 2301 78 3 7 chrX 1958222 1958517 -160641413 - AluY SINE Alu -17 294 1 214 244 30 30 chrX 1958597 1958728 -160641202 + (TATAA)n Simple_repeat Simple_repeat 4 134 0 301 211 46 40 chrX 1958959 1959134 -160640796 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 26 30 0 0 chrX 1959295 1959328 -160640602 + AT_rich Low_complexity Low_complexity 1 33 0 717 264 65 0 chrX 1959975 1960176 -160639754 - MER58A DNA MER1_type -10 214 1 1707 170 3 32 chrX 1960224 1960536 -160639394 + AluJo SINE Alu 2 304 -8 4448 94 14 17 chrX 1961299 1961349 -160638581 + L1PA10 LINE L1 5515 5564 -604 2465 77 0 0 chrX 1961349 1961649 -160638281 + AluY SINE Alu 1 300 -11 4448 94 14 17 chrX 1961649 1962236 -160637694 + L1PA10 LINE L1 5564 6150 -18 488 225 16 47 chrX 1962387 1962425 -160637505 + MER58B DNA MER1_type 202 240 -2180 1966 180 25 22 chrX 1962425 1962541 -160637389 + MER57A LTR ERV1 1 115 -288 1673 150 29 51 chrX 1962541 1962854 -160637076 - AluJo SINE Alu -6 306 1 1966 180 25 22 chrX 1962854 1963138 -160636792 + MER57A LTR ERV1 115 402 -1 488 225 16 47 chrX 1963138 1963228 -160636702 + MER58B DNA MER1_type 240 326 -15 21 36 0 0 chrX 1964088 1964116 -160635814 + AT_rich Low_complexity Low_complexity 1 28 0 3346 127 35 6 chrX 1964992 1965504 -160634426 + MER1A DNA MER1_type 1 527 0 347 312 0 0 chrX 1965599 1965692 -160634238 + MLT1H LTR MaLR 262 354 -195 1146 171 5 0 chrX 1965843 1966048 -160633882 + MLT2B2 LTR ERVL 1 206 -309 4484 119 4 12 chrX 1966052 1966742 -160633188 + LTR8 LTR ERV1 7 691 0 727 227 0 11 chrX 1966753 1966929 -160633001 + MLT2B2 LTR ERVL 227 400 -115 467 189 0 0 chrX 1966947 1967021 -160632909 - AluJ/FLAM SINE Alu -236 76 3 424 279 88 0 chrX 1967024 1967171 -160632759 - MER58A DNA MER1_type 0 165 6 454 246 15 75 chrX 1967276 1967475 -160632455 + LTR4 LTR ERV1 16 202 -394 827 208 39 53 chrX 1967655 1967939 -160631991 + LTR4 LTR ERV1 317 596 0 358 279 111 24 chrX 1968346 1968554 -160631376 - L1MEc LINE L1 -6027 369 144 2718 122 35 2 chrX 1968645 1969073 -160630857 + MER4E LTR ERV1 1 442 -337 1070 97 13 0 chrX 1969066 1969220 -160630710 + MER4E LTR ERV1 611 766 0 * 3667 106 18 23 chrX 1969666 1969786 -160630144 - MER41A LTR ERV1 0 554 435 2346 107 0 3 chrX 1969786 1970094 -160629836 + AluSg SINE Alu 1 307 -3 3667 106 18 23 chrX 1970094 1970530 -160629400 - MER41A LTR ERV1 -119 435 1 1627 184 27 27 chrX 1970687 1970986 -160628944 - AluJo SINE Alu -13 299 1 1699 167 10 29 chrX 1971860 1972166 -160627764 + AluJb SINE Alu 1 300 -12 21 0 0 0 chrX 1972723 1972744 -160627186 + AT_rich Low_complexity Low_complexity 1 21 0 354 286 9 9 chrX 1973259 1973371 -160626559 + (TA)n Simple_repeat Simple_repeat 2 113 0 822 213 13 49 chrX 1973994 1974015 -160625915 - MER20 DNA MER1_type -1 218 198 4543 155 51 1 chrX 1974015 1974802 -160625128 + LTR1B LTR ERV1 1 826 0 822 213 13 49 chrX 1974802 1975005 -160624925 - MER20 DNA MER1_type -21 198 2 1327 183 3 97 chrX 1975194 1975505 -160624425 - AluJb SINE Alu -30 282 1 565 223 73 113 chrX 1975511 1976212 -160623718 - L1MC5 LINE L1 -184 7777 7105 1031 230 62 43 chrX 1976363 1976661 -160623269 - MLT1A2 LTR MaLR -15 359 51 2469 113 8 3 chrX 1976661 1977023 -160622907 - THE1B LTR MaLR 0 364 1 1031 230 62 43 chrX 1977023 1977076 -160622854 - MLT1A2 LTR MaLR -323 51 1 2527 165 34 47 chrX 1977357 1977494 -160622436 - LTR24C LTR ERV1 0 593 456 2345 98 0 16 chrX 1977494 1977800 -160622130 + AluSg SINE Alu 1 301 -9 2527 165 34 47 chrX 1977800 1978260 -160621670 - LTR24C LTR ERV1 -137 456 44 2015 143 0 16 chrX 1978260 1978568 -160621362 + AluSx SINE Alu 1 303 -9 2527 165 34 47 chrX 1978568 1978609 -160621321 - LTR24C LTR ERV1 -549 44 4 1554 150 0 35 chrX 1979137 1979417 -160620513 + AluSx SINE Alu 50 312 0 1565 189 22 6 chrX 1979784 1980100 -160619830 + MSTB1 LTR MaLR 1 321 -111 1065 144 9 50 chrX 1980100 1980322 -160619608 - LTR1 LTR ERV1 0 785 573 2110 107 3 13 chrX 1980329 1980627 -160619303 + AluSx SINE Alu 1 295 -17 2264 102 99 9 chrX 1980673 1981017 -160618913 - THE1C LTR MaLR 0 375 1 449 0 0 0 chrX 1981061 1981113 -160618817 - THE1B LTR MaLR -312 52 1 2200 125 7 0 chrX 1982001 1982304 -160617626 + AluSx SINE Alu 1 305 -7 217 271 0 0 chrX 1982393 1982441 -160617489 + GA-rich Low_complexity Low_complexity 3 50 0 192 276 83 77 chrX 1982885 1983041 -160616889 - L2 LINE L2 -2 3311 3155 31 0 0 0 chrX 1983714 1983745 -160616185 + AT_rich Low_complexity Low_complexity 1 31 0 1744 173 3 7 chrX 1983762 1984045 -160615885 - AluSx SINE Alu -30 282 1 1473 166 31 15 chrX 1984067 1984202 -160615728 - AluJo SINE Alu -49 263 121 360 0 0 0 chrX 1984202 1984242 -160615688 + (TA)n Simple_repeat Simple_repeat 2 41 0 1473 166 31 15 chrX 1984242 1984365 -160615565 - AluJo SINE Alu -191 121 1 327 68 0 0 chrX 1984376 1984420 -160615510 - FLAM SINE Alu -8 125 82 317 358 55 30 chrX 1984530 1984731 -160615199 - MIR SINE MIR -31 231 26 1968 163 38 10 chrX 1984905 1985297 -160614633 - MER57A LTR ERV1 0 403 1 2416 28 65 0 chrX 1985775 1986066 -160613864 - AluY SINE Alu -1 310 1 400 170 26 118 chrX 1987024 1987124 -160612806 + MER4A LTR ERV1 3 88 -576 2110 120 3 0 chrX 1987124 1987463 -160612467 - AluSx SINE Alu 0 340 1 400 170 26 118 chrX 1987463 1987513 -160612417 + MER4A LTR ERV1 88 141 -523 602 199 86 94 chrX 1987531 1987787 -160612143 - LTR13 LTR ERVK -753 254 1 643 158 0 0 chrX 1987787 1987882 -160612048 - AluS SINE Alu -217 95 1 583 198 0 0 chrX 1987882 1987993 -160611937 - L1M3 LINE L1 -505 5675 5565 971 131 23 11 chrX 1988041 1988217 -160611713 - Charlie3 DNA MER1_type -9 2701 2524 385 59 191 0 chrX 1988220 1988288 -160611642 - Charlie3 DNA MER1_type -2629 81 1 1237 198 60 35 chrX 1988288 1988607 -160611323 + L1MB5 LINE L1 5838 6164 -10 21 0 0 0 chrX 1988608 1988629 -160611301 + AT_rich Low_complexity Low_complexity 1 21 0 1402 207 43 20 chrX 1988859 1989158 -160610772 + AluJo SINE Alu 1 306 -6 233 307 72 30 chrX 1989311 1989477 -160610453 - L2 LINE L2 -51 3262 3090 195 100 0 0 chrX 1989835 1989865 -160610065 + (TC)n Simple_repeat Simple_repeat 2 31 0 240 149 0 0 chrX 1990193 1990240 -160609690 + (TATG)n Simple_repeat Simple_repeat 2 48 0 996 177 5 7 chrX 1990255 1990869 -160609061 + (TCCA)n Simple_repeat Simple_repeat 3 787 0 738 131 17 28 chrX 1990910 1991086 -160608844 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 239 261 15 0 chrX 1991089 1991154 -160608776 + (TATG)n Simple_repeat Simple_repeat 2 67 0 198 351 158 12 chrX 1991250 1991421 -160608509 - MIR SINE MIR -51 211 16 43 81 0 0 chrX 1991561 1991660 -160608270 + AT_rich Low_complexity Low_complexity 1 99 0 25 51 0 0 chrX 1992283 1992322 -160607608 + AT_rich Low_complexity Low_complexity 1 39 0 261 119 0 0 chrX 1993009 1993051 -160606879 + (CA)n Simple_repeat Simple_repeat 1 42 0 217 254 0 0 chrX 1993690 1993745 -160606185 + (TA)n Simple_repeat Simple_repeat 1 55 0 1652 190 19 13 chrX 1994316 1994626 -160605304 + AluJo SINE Alu 1 312 0 24 0 0 0 chrX 1994675 1994699 -160605231 + AT_rich Low_complexity Low_complexity 1 24 0 244 0 56 0 chrX 1995036 1995072 -160604858 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1664 152 92 7 chrX 1995079 1995362 -160604568 + AluJb SINE Alu 1 307 -5 317 167 13 0 chrX 1995432 1995510 -160604420 + GA-rich Low_complexity Low_complexity 2 80 0 2203 92 0 3 chrX 1996214 1996525 -160603405 - AluSc SINE Alu 0 310 1 300 322 68 19 chrX 1996529 1996734 -160603196 - L1M4 LINE L1 -845 5301 5087 24 0 0 0 chrX 1997448 1997472 -160602458 + AT_rich Low_complexity Low_complexity 1 24 0 3742 79 118 0 chrX 1997790 1998193 -160601737 + LTR66 LTR ERVL 1 486 -124 216 0 0 0 chrX 1998193 1998217 -160601713 + (TA)n Simple_repeat Simple_repeat 2 25 0 3742 79 118 0 chrX 1998217 1998357 -160601573 + LTR66 LTR ERVL 486 608 -2 19180 165 18 3 chrX 1998374 2001729 -160598201 + HERVL66 LTR ERVL 925 4329 0 3982 100 38 20 chrX 2001729 2002133 -160597797 + LTR66 LTR ERVL 1 421 -189 351 0 0 0 chrX 2002133 2002172 -160597758 + (TG)n Simple_repeat Simple_repeat 2 40 0 3982 100 38 20 chrX 2002172 2002366 -160597564 + LTR66 LTR ERVL 421 610 0 2051 155 0 3 chrX 2002540 2002843 -160597087 + AluJb SINE Alu 9 310 -2 384 324 144 28 chrX 2003786 2004215 -160595715 + L1M4 LINE L1 4549 5027 -1119 21 57 0 0 chrX 2004343 2004378 -160595552 + AT_rich Low_complexity Low_complexity 1 35 0 1382 118 52 38 chrX 2004485 2004772 -160595158 - THE1C LTR MaLR 0 375 85 368 61 0 0 chrX 2004762 2004811 -160595119 - Alu SINE Alu -251 49 1 * 575 148 9 19 chrX 2004834 2004942 -160594988 - THE1C LTR MaLR -268 107 1 24 53 0 0 chrX 2005068 2005106 -160594824 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chrX 2005297 2005328 -160594602 + AT_rich Low_complexity Low_complexity 1 31 0 1273 166 57 40 chrX 2005332 2005579 -160594351 + AluJb SINE Alu 60 310 -2 561 292 162 68 chrX 2005944 2006065 -160593865 + L1M4 LINE L1 2175 2283 -3863 2405 101 3 0 chrX 2006065 2006373 -160593557 + AluSp SINE Alu 1 309 -4 2323 62 0 55 chrX 2006378 2006703 -160593227 + AluY SINE Alu 3 309 -2 561 292 162 68 chrX 2006703 2007784 -160592146 + L1M4 LINE L1 2286 3497 -2649 296 282 94 47 chrX 2007862 2008011 -160591919 + L2 LINE L2 2738 2893 -421 691 168 22 0 chrX 2008078 2008215 -160591715 - L1MA7 LINE L1 -5 6286 6147 22 35 0 0 chrX 2008693 2008722 -160591208 + AT_rich Low_complexity Low_complexity 1 29 0 1643 169 25 0 chrX 2009076 2009360 -160590570 - AluSx SINE Alu -21 291 1 27 49 0 0 chrX 2010029 2010070 -160589860 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chrX 2010427 2010462 -160589468 + AT_rich Low_complexity Low_complexity 1 35 0 398 195 23 8 chrX 2011516 2011644 -160588286 + CT-rich Low_complexity Low_complexity 1 130 0 186 43 0 0 chrX 2012951 2012974 -160586956 + (CA)n Simple_repeat Simple_repeat 1 23 0 2232 115 0 7 chrX 2013127 2013432 -160586498 + AluSx SINE Alu 1 303 -9 672 280 93 21 chrX 2014504 2014655 -160585275 - L1M4 LINE L1 -1230 4916 4777 770 167 0 0 chrX 2014655 2014775 -160585155 - FLAM_A SINE Alu -13 120 1 672 280 93 21 chrX 2014775 2015152 -160584778 - L1M4 LINE L1 -1369 4777 4350 344 240 77 38 chrX 2015172 2015355 -160584575 - L1M4 LINE L1 -2101 4045 3856 1463 189 38 10 chrX 2015644 2015935 -160583995 + AluJo SINE Alu 1 299 -13 1721 100 118 14 chrX 2015936 2016215 -160583715 + AluYa8 SINE Alu 1 308 -2 748 121 35 14 chrX 2016244 2016582 -160583348 + GA-rich Low_complexity Low_complexity 1 344 0 1635 144 4 0 chrX 2016618 2016854 -160583076 - AluSg SINE Alu -73 237 1 868 170 114 1 chrX 2016876 2017081 -160582849 - L1MB1 LINE L1 -287 5902 5691 578 171 16 54 chrX 2017136 2017265 -160582665 + L1MC1 LINE L1 6026 6149 -184 1532 133 54 11 chrX 2017267 2017545 -160582385 - LTR38B LTR ERV1 0 610 321 * 2288 145 18 5 chrX 2017541 2017927 -160582003 - LTR38B LTR ERV1 -219 391 1 872 198 6 11 chrX 2017927 2018109 -160581821 + L1MC1 LINE L1 6148 6328 -5 407 148 62 16 chrX 2018969 2019282 -160580648 + (TCTA)n Simple_repeat Simple_repeat 1 327 0 29 0 0 0 chrX 2019324 2019353 -160580577 + AT_rich Low_complexity Low_complexity 1 29 0 228 312 71 21 chrX 2020261 2020402 -160579528 + MIR SINE MIR 91 238 -24 201 220 0 40 chrX 2020694 2020744 -160579186 + (TATG)n Simple_repeat Simple_repeat 1 48 0 * 211 294 0 0 chrX 2020711 2020779 -160579151 + (TA)n Simple_repeat Simple_repeat 2 69 0 217 182 15 15 chrX 2020811 2020877 -160579053 + (TA)n Simple_repeat Simple_repeat 2 67 0 277 229 29 6 chrX 2020933 2021109 -160578821 + (TA)n Simple_repeat Simple_repeat 1 180 0 357 273 0 37 chrX 2021185 2021372 -160578558 + (TA)n Simple_repeat Simple_repeat 1 180 0 363 261 7 14 chrX 2021477 2021615 -160578315 + (TA)n Simple_repeat Simple_repeat 2 138 0 219 139 0 0 chrX 2021654 2021690 -160578240 + (TA)n Simple_repeat Simple_repeat 1 36 0 223 191 0 21 chrX 2021725 2021772 -160578158 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1868 142 10 10 chrX 2021780 2022075 -160577855 - AluSx SINE Alu -17 295 1 227 234 78 0 chrX 2022124 2022201 -160577729 - LTR50 LTR ERVL 0 795 713 234 0 0 0 chrX 2023103 2023129 -160576801 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 378 0 0 0 chrX 2023128 2023170 -160576760 + (CA)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chrX 2023372 2023397 -160576533 + AT_rich Low_complexity Low_complexity 1 25 0 2913 177 47 31 chrX 2023399 2024044 -160575886 - LTR8A LTR ERV1 -60 667 13 1579 150 64 16 chrX 2024258 2024571 -160575359 + MER4A LTR ERV1 1 328 -336 23 0 0 0 chrX 2024637 2024660 -160575270 + AT_rich Low_complexity Low_complexity 1 23 0 359 143 16 16 chrX 2024737 2024800 -160575130 + MER4C LTR ERV1 294 356 -109 5299 90 6 44 chrX 2025397 2026230 -160573700 + L1PB1 LINE L1 5353 6149 -2 220 229 24 0 chrX 2026372 2026455 -160573475 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 2489 89 15 36 chrX 2027357 2027539 -160572391 - L1PB1 LINE L1 -5 6146 5962 2414 89 0 3 chrX 2027539 2027852 -160572078 - AluSx SINE Alu 0 312 1 2489 89 15 36 chrX 2027852 2028060 -160571870 - L1PB1 LINE L1 -189 5962 5764 1750 90 43 0 chrX 2028102 2028358 -160571572 - L1PB1 LINE L1 -360 5791 5525 279 0 0 0 chrX 2030374 2030405 -160569525 + (CA)n Simple_repeat Simple_repeat 2 32 0 2296 103 0 3 chrX 2030847 2031158 -160568772 + AluSq SINE Alu 1 310 -3 53 40 0 0 chrX 2031812 2031886 -160568044 + AT_rich Low_complexity Low_complexity 1 74 0 3069 168 27 14 chrX 2031959 2032149 -160567781 - L1MB3 LINE L1 -19 6164 5978 4988 75 6 3 chrX 2032149 2032807 -160567123 + PABL_A LTR ERV1 1 660 0 3069 168 27 14 chrX 2032807 2033242 -160566688 - L1MB3 LINE L1 -205 5978 5531 3781 49 0 0 chrX 2033242 2033707 -160566223 + L1PA5 LINE L1 5683 6150 -4 401 190 0 13 chrX 2033736 2033815 -160566115 - L1MB3 LINE L1 -646 5528 5451 2097 118 3 10 chrX 2033846 2034150 -160565780 + AluSx SINE Alu 1 302 -10 378 0 0 0 chrX 2034207 2034249 -160565681 + (TG)n Simple_repeat Simple_repeat 1 42 0 181 125 94 0 chrX 2034502 2034534 -160565396 - MER5C DNA MER1_type -199 125 91 238 284 81 0 chrX 2034636 2034710 -160565220 - L2 LINE L2 0 3272 3193 1627 168 3 56 chrX 2035009 2035313 -160564617 + AluJo SINE Alu 3 290 -22 279 226 36 14 chrX 2035649 2035732 -160564198 - L1MB3 LINE L1 -689 5462 5391 1832 159 0 28 chrX 2035732 2036053 -160563877 - AluSx SINE Alu 0 312 1 279 0 0 0 chrX 2036060 2036091 -160563839 + (TTA)n Simple_repeat Simple_repeat 3 33 0 25 75 0 0 chrX 2036192 2036245 -160563685 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chrX 2036479 2036507 -160563423 + AT_rich Low_complexity Low_complexity 1 28 0 1078 281 201 14 chrX 2037114 2037631 -160562299 - MLT1E2 LTR MaLR -12 614 1 351 192 0 0 chrX 2037690 2037763 -160562167 + (ATG)n Simple_repeat Simple_repeat 1 73 0 892 155 3 14 chrX 2037785 2038154 -160561776 + (ATG)n Simple_repeat Simple_repeat 1 364 0 209 222 32 0 chrX 2038796 2038859 -160561071 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 423 0 0 0 chrX 2038880 2038927 -160561003 + (CA)n Simple_repeat Simple_repeat 2 48 0 2206 113 30 54 chrX 2038962 2039332 -160560598 + THE1B LTR MaLR 1 361 -3 1928 144 7 0 chrX 2039332 2039609 -160560321 - AluSx SINE Alu -33 279 1 404 100 39 56 chrX 2040497 2040677 -160559253 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 339 177 48 8 chrX 2040677 2040801 -160559129 + (TA)n Simple_repeat Simple_repeat 1 129 0 2051 134 3 3 chrX 2040812 2041103 -160558827 - AluSx SINE Alu -21 291 1 745 172 9 0 chrX 2041413 2041529 -160558401 + FLAM_C SINE Alu 1 117 -16 198 0 0 0 chrX 2041557 2041579 -160558351 + (TG)n Simple_repeat Simple_repeat 2 23 0 456 263 0 43 chrX 2041738 2041924 -160558006 + CT-rich Low_complexity Low_complexity 3 180 0 217 189 0 19 chrX 2041952 2042005 -160557925 + T-rich Low_complexity Low_complexity 3 54 0 300 221 0 15 chrX 2042199 2042267 -160557663 - L1MC4 LINE L1 -1340 6702 6636 1120 165 0 0 chrX 2042267 2042437 -160557493 + AluJb SINE Alu 133 302 -10 1792 148 0 7 chrX 2042469 2042759 -160557171 - LTR51 LTR ERV1 0 671 384 324 176 0 0 chrX 2042760 2042828 -160557102 + (ATG)n Simple_repeat Simple_repeat 1 68 0 2099 155 57 5 chrX 2042831 2043198 -160556732 - LTR51 LTR ERV1 -285 386 1 2055 111 0 11 chrX 2043293 2043573 -160556357 + AluSx SINE Alu 24 300 -12 2037 136 7 13 chrX 2044806 2045115 -160554815 - AluSx SINE Alu -5 307 1 258 287 172 25 chrX 2045159 2045281 -160554649 - L2 LINE L2 -4 3309 3170 963 254 9 0 chrX 2045353 2045570 -160554360 + MER58A DNA MER1_type 6 224 0 229 270 35 43 chrX 2045583 2045698 -160554232 - L2 LINE L2 -233 3080 2967 1985 234 52 74 chrX 2045883 2046513 -160553417 - L1MD2 LINE L1 -16 6343 5730 1736 157 7 27 chrX 2046513 2046812 -160553118 - AluJb SINE Alu -19 293 1 1985 234 52 74 chrX 2046812 2046926 -160553004 - L1MD2 LINE L1 -629 5730 5615 30 27 0 0 chrX 2047200 2047237 -160552693 + AT_rich Low_complexity Low_complexity 1 37 0 3198 95 101 141 chrX 2048062 2048777 -160551153 + LTR12 LTR ERV1 1 686 -2 866 65 73 16 chrX 2048779 2048918 -160551012 + LTR12 LTR ERV1 270 713 -1 1728 184 0 14 chrX 2048992 2049285 -160550645 + AluJo SINE Alu 1 289 -23 639 208 0 0 chrX 2050533 2050663 -160549267 - FLAM_C SINE Alu -13 130 1 26 30 0 0 chrX 2050860 2050893 -160549037 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chrX 2051509 2051535 -160548395 + AT_rich Low_complexity Low_complexity 1 26 0 2319 87 3 10 chrX 2051541 2051850 -160548080 + AluY SINE Alu 3 309 -2 366 23 0 0 chrX 2052286 2052329 -160547601 + (CA)n Simple_repeat Simple_repeat 2 44 0 1673 172 26 20 chrX 2052608 2052910 -160547020 - AluJb SINE Alu -8 304 1 5181 125 44 18 chrX 2053302 2054182 -160545748 - MER4D LTR ERV1 0 903 1 2846 157 28 87 chrX 2054287 2054440 -160545490 + MER51D LTR ERV1 10 171 -486 2487 53 0 3 chrX 2054440 2054740 -160545190 + AluY SINE Alu 1 299 -12 2846 157 28 87 chrX 2054740 2055275 -160544655 + MER51D LTR ERV1 171 657 0 269 135 19 0 chrX 2055293 2055345 -160544585 + CT-rich Low_complexity Low_complexity 2 54 0 201 339 0 0 chrX 2055806 2055865 -160544065 + L2 LINE L2 3240 3298 -15 830 157 0 0 chrX 2056477 2056598 -160543332 + FLAM_C SINE Alu 2 122 -11 192 77 0 0 chrX 2056598 2056624 -160543306 + (CAGT)n Simple_repeat Simple_repeat 4 29 0 369 163 0 93 chrX 2057023 2057109 -160542821 + MER51D LTR ERV1 119 196 -461 1827 164 18 0 chrX 2057277 2057563 -160542367 + AluSx SINE Alu 4 294 -18 215 289 53 0 chrX 2057945 2058021 -160541909 + L2 LINE L2 3225 3304 -9 1729 163 4 7 chrX 2058334 2058610 -160541320 + AluJo SINE Alu 1 275 -37 425 196 14 28 chrX 2058611 2058754 -160541176 + GA-rich Low_complexity Low_complexity 4 144 0 2074 192 166 34 chrX 2059332 2060062 -160539868 - LTR1B LTR ERV1 0 826 1 2023 133 7 0 chrX 2060152 2060437 -160539493 + AluSq SINE Alu 4 290 -23 210 37 0 0 chrX 2060440 2060467 -160539463 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 637 168 0 0 chrX 2060480 2060587 -160539343 + FLAM_C SINE Alu 3 109 -34 27 29 0 0 chrX 2060587 2060621 -160539309 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chrX 2060944 2060976 -160538954 + AT_rich Low_complexity Low_complexity 1 32 0 1693 183 24 0 chrX 2061110 2061399 -160538531 + AluJb SINE Alu 6 301 -11 797 226 37 5 chrX 2061884 2062070 -160537860 + MER3 DNA MER1_type 1 192 -17 2697 128 32 40 chrX 2062070 2062666 -160537264 + MER4E LTR ERV1 1 779 0 3877 117 14 0 chrX 2062754 2063311 -160536619 - MER61E LTR ERV1 -4 565 1 1208 114 0 0 chrX 2063670 2063836 -160536094 - LTR8 LTR ERV1 0 691 526 1615 132 15 48 chrX 2063874 2064147 -160535783 - AluSx SINE Alu 0 312 49 559 189 0 0 chrX 2064151 2064241 -160535689 - AluS SINE Alu -222 90 1 2082 204 14 85 chrX 2064242 2064817 -160535113 - LTR8 LTR ERV1 -157 534 1 2538 50 0 7 chrX 2066230 2066531 -160533399 - AluY SINE Alu -12 299 1 3073 109 2 0 chrX 2066628 2067060 -160532870 + MER57B LTR ERV1 2 434 0 21 57 0 0 chrX 2067373 2067408 -160532522 + AT_rich Low_complexity Low_complexity 1 35 0 297 75 0 0 chrX 2067539 2067579 -160532351 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 469 120 34 46 chrX 2068064 2068239 -160531691 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 834 327 28 13 chrX 2068309 2068707 -160531223 - L1MC4a LINE L1 -1968 5840 5437 488 59 15 0 chrX 2068721 2068789 -160531141 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 375 314 134 28 chrX 2068790 2069073 -160530857 - L1MC4a LINE L1 -1027 5119 4807 234 243 54 0 chrX 2069339 2069413 -160530517 + LTR33 LTR ERVL 435 512 -9 1680 161 9 24 chrX 2069765 2070094 -160529836 - L1MA8 LINE L1 -3 6288 5965 2609 7 0 0 chrX 2070384 2070666 -160529264 + AluYa5 SINE Alu 22 303 -8 456 349 0 0 chrX 2070890 2071036 -160528894 - L3 LINE CR1 -382 1195 1050 456 360 129 33 chrX 2071134 2071529 -160528401 - L3 LINE CR1 -742 835 403 271 184 0 18 chrX 2071637 2071751 -160528179 + (TA)n Simple_repeat Simple_repeat 1 112 0 1802 157 78 23 chrX 2072248 2072593 -160527337 - THE1B LTR MaLR 0 364 1 273 336 0 22 chrX 2073075 2073209 -160526721 + L1ME1 LINE L1 1441 1571 -4825 902 277 38 47 chrX 2073237 2073767 -160526163 - L1MC4a LINE L1 -3400 2746 2222 1048 135 0 59 chrX 2073781 2073951 -160525979 - FRAM SINE Alu -20 156 1 590 268 39 14 chrX 2074155 2074439 -160525491 + L1ME1 LINE L1 2868 3158 -3057 345 47 0 0 chrX 2074546 2074589 -160525341 + (CA)n Simple_repeat Simple_repeat 2 44 0 412 253 14 91 chrX 2074597 2074818 -160525112 + L1MD3 LINE L1 7787 7990 -5 283 304 59 37 chrX 2075252 2075627 -160524303 + L1ME1 LINE L1 4992 5374 -841 1412 278 74 34 chrX 2075681 2075871 -160524059 + L1ME1 LINE L1 5426 5607 -628 1926 141 31 0 chrX 2075871 2076161 -160523769 - AluSx SINE Alu -12 300 2 1412 278 74 34 chrX 2076161 2076672 -160523258 + L1ME1 LINE L1 5607 6155 -80 370 191 99 15 chrX 2076695 2076826 -160523104 - L1M4 LINE L1 -2909 3237 3096 366 276 40 55 chrX 2076839 2076945 -160522985 - L1M4 LINE L1 -3007 3139 3036 2140 114 44 33 chrX 2076945 2077305 -160522625 + THE1B LTR MaLR 1 364 0 366 276 40 55 chrX 2077305 2077397 -160522533 - L1M4 LINE L1 -3110 3036 2944 318 273 12 19 chrX 2077470 2077631 -160522299 + (TA)n Simple_repeat Simple_repeat 1 160 0 453 36 0 0 chrX 2077733 2077788 -160522142 + (TA)n Simple_repeat Simple_repeat 2 56 0 578 313 36 60 chrX 2078034 2078408 -160521522 + L1ME2 LINE L1 5741 6106 -58 2471 98 27 11 chrX 2078408 2078777 -160521153 + THE1C LTR MaLR 1 375 0 578 313 36 60 chrX 2078777 2078817 -160521113 + L1ME2 LINE L1 6106 6145 -19 1999 123 14 10 chrX 2079831 2080124 -160519806 + THE1B LTR MaLR 68 361 -3 320 249 50 86 chrX 2080456 2080677 -160519253 - L1MC5 LINE L1 -438 7523 7311 2652 46 0 0 chrX 2081457 2081762 -160518168 + AluY SINE Alu 1 305 -6 220 224 15 0 chrX 2081955 2082022 -160517908 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 1713 176 13 0 chrX 2082444 2082745 -160517185 + L1PA16 LINE L1 5729 6033 -133 1154 158 49 25 chrX 2082745 2082948 -160516982 - THE1B LTR MaLR 0 364 157 237 132 44 22 chrX 2083871 2083962 -160515968 + (TA)n Simple_repeat Simple_repeat 1 93 0 73 79 0 0 chrX 2083968 2084108 -160515822 + AT_rich Low_complexity Low_complexity 1 140 0 337 253 0 77 chrX 2084485 2084679 -160515251 + T-rich Low_complexity Low_complexity 2 180 0 * 361 229 29 34 chrX 2084534 2084709 -160515221 + (TTG)n Simple_repeat Simple_repeat 2 175 0 204 135 32 40 chrX 2085243 2085369 -160514561 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 302 138 52 23 chrX 2085379 2085553 -160514377 + (TA)n Simple_repeat Simple_repeat 2 180 0 198 149 27 14 chrX 2085681 2085755 -160514175 + (TA)n Simple_repeat Simple_repeat 2 76 0 200 197 34 14 chrX 2085785 2085932 -160513998 + (TA)n Simple_repeat Simple_repeat 2 151 0 2303 68 0 3 chrX 2085971 2086263 -160513667 + AluY SINE Alu 1 291 -20 1231 138 63 25 chrX 2086622 2086861 -160513069 + LTR29 LTR ERV1 140 387 -235 808 247 233 31 chrX 2087559 2087817 -160512113 - L1MD2 LINE L1 -21 6836 6631 2616 101 3 6 chrX 2087817 2088182 -160511748 + THE1B LTR MaLR 1 364 0 808 247 233 31 chrX 2088182 2088404 -160511526 - L1MD2 LINE L1 -226 6631 6259 1502 209 3 7 chrX 2088467 2088769 -160511161 - AluJb SINE Alu -11 301 1 341 120 8 51 chrX 2089145 2089262 -160510668 + (TA)n Simple_repeat Simple_repeat 2 113 0 496 282 86 48 chrX 2089303 2089594 -160510336 - MLT1L LTR MaLR -5 610 309 1624 196 0 24 chrX 2089830 2090144 -160509786 - AluJb SINE Alu 0 307 1 184 171 49 16 chrX 2090403 2090526 -160509404 + (TA)n Simple_repeat Simple_repeat 2 128 0 22 35 0 0 chrX 2090731 2090760 -160509170 + AT_rich Low_complexity Low_complexity 1 29 0 274 200 156 37 chrX 2091072 2091207 -160508723 - L1MD2 LINE L1 -2295 6011 5861 2552 261 51 44 chrX 2091932 2093069 -160506861 - L1MD2 LINE L1 -2345 4299 3155 1189 261 28 59 chrX 2093078 2093504 -160506426 - L1MD2 LINE L1 -6105 437 25 221 200 0 18 chrX 2093518 2093573 -160506357 + T-rich Low_complexity Low_complexity 1 54 0 2113 183 6 8 chrX 2093724 2094090 -160505840 + MLT1A1 LTR MaLR 1 365 0 1190 309 64 8 chrX 2094128 2094910 -160505020 - L1ME LINE L1 -3174 2906 2081 22 94 0 0 chrX 2094941 2095005 -160504925 + AT_rich Low_complexity Low_complexity 1 64 0 392 300 125 44 chrX 2095270 2095762 -160504168 - L1ME LINE L1 -4549 1531 1056 297 265 19 45 chrX 2095784 2095982 -160503948 - L1ME LINE L1 -5030 1040 839 22 56 0 0 chrX 2096178 2096214 -160503716 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chrX 2096541 2096583 -160503347 + AT_rich Low_complexity Low_complexity 1 42 0 751 167 0 0 chrX 2096583 2096703 -160503227 - FLAM_C SINE Alu -11 122 3 542 262 152 0 chrX 2097067 2097231 -160502699 + MER58A DNA MER1_type 1 189 -35 1182 262 131 22 chrX 2097349 2097754 -160502176 + MLT1E2 LTR MaLR 138 586 -40 2399 115 25 0 chrX 2097945 2098301 -160501629 + L1PA16 LINE L1 5793 6157 -9 340 154 53 28 chrX 2098829 2099082 -160500848 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 470 120 82 0 chrX 2099149 2099385 -160500545 + (TAGA)n Simple_repeat Simple_repeat 1 255 0 180 0 0 0 chrX 2100023 2100043 -160499887 + (TTTTC)n Simple_repeat Simple_repeat 1 20 0 1483 184 4 8 chrX 2100046 2100307 -160499623 - AluJo SINE Alu -38 274 15 2541 93 31 6 chrX 2100776 2101131 -160498799 - THE1B LTR MaLR 0 364 1 1118 195 108 70 chrX 2101415 2101702 -160498228 - AluJo SINE Alu -3 299 2 192 217 0 0 chrX 2101876 2101922 -160498008 + CT-rich Low_complexity Low_complexity 2 47 0 1622 138 113 14 chrX 2102075 2102357 -160497573 + AluSg SINE Alu 1 310 0 1654 175 3 28 chrX 2103248 2103570 -160496360 + AluJo SINE Alu 1 315 0 1815 153 22 26 chrX 2104848 2105161 -160494769 + AluJo SINE Alu 1 312 0 2174 74 3 7 chrX 2105787 2106071 -160493859 - AluSg SINE Alu 0 310 28 1528 155 16 0 chrX 2106267 2106525 -160493405 - L1PA16 LINE L1 -22 6144 5883 3857 153 16 36 chrX 2107264 2107957 -160491973 + MER50 LTR ERV1 56 734 0 2585 100 5 26 chrX 2107962 2108343 -160491587 + THE1C LTR MaLR 3 375 0 732 257 9 36 chrX 2108414 2108636 -160491294 - MER20 DNA MER1_type -3 216 1 238 304 59 29 chrX 2108636 2108739 -160491191 + L2 LINE L2 3155 3301 -12 486 368 103 13 chrX 2109591 2110045 -160489885 - L2 LINE L2 -534 2780 2286 31 26 0 0 chrX 2110065 2110103 -160489827 + AT_rich Low_complexity Low_complexity 1 38 0 1094 206 23 0 chrX 2110124 2110386 -160489544 - L1MA3 LINE L1 0 6305 6038 243 152 0 0 chrX 2110436 2110482 -160489448 + (TG)n Simple_repeat Simple_repeat 1 46 0 316 298 38 100 chrX 2110602 2110847 -160489083 + L1MC4a LINE L1 5670 5889 -232 1832 193 107 5 chrX 2110847 2111266 -160488664 - MLT2C2 LTR ERVL 0 464 3 316 298 38 100 chrX 2111266 2111386 -160488544 + L1MC4a LINE L1 5889 6015 -106 1971 116 23 20 chrX 2112006 2112307 -160487623 - AluSc SINE Alu -5 304 3 24 96 0 0 chrX 2112376 2112449 -160487481 + AT_rich Low_complexity Low_complexity 1 73 0 918 109 33 51 chrX 2112717 2112906 -160487024 - THE1C LTR MaLR 0 375 203 634 85 0 11 chrX 2112905 2112999 -160486931 - THE1C LTR MaLR -335 93 1 * 21 0 0 0 chrX 2113079 2113100 -160486830 + AT_rich Low_complexity Low_complexity 1 21 0 1227 240 14 35 chrX 2113478 2113766 -160486164 - AluJo SINE Alu -30 282 1 367 275 34 60 chrX 2113777 2113828 -160486102 + L1ME LINE L1 5562 5613 -508 2172 110 0 41 chrX 2113828 2114147 -160485783 - AluSx SINE Alu -6 306 1 367 275 34 60 chrX 2114147 2114244 -160485686 + L1ME LINE L1 5613 5706 -415 303 192 0 0 chrX 2114404 2114477 -160485453 + GA-rich Low_complexity Low_complexity 2 74 0 2127 137 22 6 chrX 2114656 2115014 -160484916 - MLT1A1 LTR MaLR -1 364 1 2514 116 83 5 chrX 2116173 2116570 -160483360 - MSTA LTR MaLR 0 428 1 23 0 0 0 chrX 2118351 2118374 -160481556 + AT_rich Low_complexity Low_complexity 1 23 0 1615 199 10 7 chrX 2118855 2119151 -160480779 - AluJo SINE Alu -15 297 1 1789 101 41 48 chrX 2119371 2119639 -160480291 + AluSq SINE Alu 24 289 -24 246 105 0 0 chrX 2119847 2119885 -160480045 + (TG)n Simple_repeat Simple_repeat 2 39 0 2559 108 3 3 chrX 2119885 2120246 -160479684 + THE1B LTR MaLR 4 364 0 429 20 0 0 chrX 2120246 2120296 -160479634 + (TG)n Simple_repeat Simple_repeat 2 51 0 243 171 49 24 chrX 2121072 2121154 -160478776 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 1060 183 0 0 chrX 2121353 2121528 -160478402 + AluJb SINE Alu 122 296 -16 2687 85 3 0 chrX 2121832 2122186 -160477744 + THE1A LTR MaLR 1 355 0 2112 116 10 0 chrX 2122473 2122767 -160477163 + AluSx SINE Alu 13 309 -3 1864 181 0 3 chrX 2123472 2123776 -160476154 + AluJo SINE Alu 3 305 -7 2030 135 10 0 chrX 2123849 2124137 -160475793 + AluSx SINE Alu 1 291 -21 853 131 14 7 chrX 2124357 2124502 -160475428 + Charlie3 DNA MER1_type 2561 2706 -4 4470 164 21 16 chrX 2124745 2125633 -160474297 + MER4D LTR ERV1 1 893 -10 2086 131 3 13 chrX 2125701 2126006 -160473924 + AluSx SINE Alu 1 302 -10 283 246 34 17 chrX 2126862 2126980 -160472950 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 732 330 78 48 chrX 2126985 2127228 -160472702 + L1M4 LINE L1 2737 2971 -3175 2694 176 49 76 chrX 2127228 2127938 -160471992 - LTR8 LTR ERV1 0 691 1 732 330 78 48 chrX 2127938 2128574 -160471356 + L1M4 LINE L1 2971 3643 -2503 3822 121 16 16 chrX 2128575 2129210 -160470720 - MER41B LTR ERV1 0 635 1 596 244 23 23 chrX 2129284 2129460 -160470470 + LTR68 LTR ERV1 19 194 -546 681 194 69 0 chrX 2129643 2129803 -160470127 + LTR68 LTR ERV1 479 649 -91 1030 168 61 61 chrX 2129900 2129978 -160469952 - AluJo SINE Alu -14 298 221 2078 145 0 0 chrX 2129978 2130275 -160469655 - AluSx SINE Alu -15 297 1 1030 168 61 61 chrX 2130275 2130372 -160469558 - AluJo SINE Alu -91 221 120 351 0 0 0 chrX 2130372 2130411 -160469519 + (TA)n Simple_repeat Simple_repeat 2 40 0 1030 168 61 61 chrX 2130411 2130448 -160469482 - AluJo SINE Alu -191 121 85 1667 185 3 7 chrX 2130843 2131145 -160468785 + AluJo SINE Alu 1 301 -11 575 338 81 40 chrX 2131176 2131909 -160468021 + L1M4 LINE L1 4036 4798 -1348 2013 112 42 0 chrX 2132283 2132570 -160467360 + AluSx SINE Alu 1 299 -13 1865 160 0 13 chrX 2133169 2133476 -160466454 - AluJo SINE Alu -3 309 7 2239 111 0 22 chrX 2133571 2133887 -160466043 + AluSx SINE Alu 1 309 -3 1869 156 7 0 chrX 2134417 2134743 -160465187 - AluJb SINE Alu 0 328 1 514 140 0 19 chrX 2134985 2135092 -160464838 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 2356 77 0 3 chrX 2135523 2135821 -160464109 - AluSg SINE Alu -13 297 1 1217 196 0 44 chrX 2136165 2136440 -160463490 - AluJo SINE Alu -10 302 40 198 103 0 0 chrX 2136914 2136943 -160462987 + (TG)n Simple_repeat Simple_repeat 2 30 0 1791 174 23 3 chrX 2137726 2138077 -160461853 - MLT1A1 LTR MaLR -1 364 7 1291 138 46 5 chrX 2138079 2138297 -160461633 + MER30 DNA MER1_type 4 230 0 23 33 0 0 chrX 2139217 2139247 -160460683 + AT_rich Low_complexity Low_complexity 1 30 0 231 351 54 40 chrX 2139330 2139478 -160460452 - L3 LINE CR1 -2 1575 1426 3502 89 26 4 chrX 2139817 2140323 -160459607 + L1PB2 LINE L1 5635 6151 0 288 0 0 0 chrX 2140342 2140374 -160459556 + (TA)n Simple_repeat Simple_repeat 2 33 0 2473 40 3 10 chrX 2140942 2141242 -160458688 - AluY SINE Alu -13 298 1 1824 231 59 12 chrX 2141287 2141358 -160458572 - L1MB5 LINE L1 -39 6135 6069 1772 145 11 11 chrX 2141358 2141675 -160458255 - AluJb SINE Alu 0 317 1 1824 231 59 12 chrX 2141675 2142095 -160457835 - L1MB5 LINE L1 -105 6069 5620 4694 88 25 1 chrX 2142143 2142816 -160457114 + L1PB1 LINE L1 5455 6143 -8 3146 105 6 0 chrX 2144018 2144505 -160455425 - L1MA3 LINE L1 -201 6104 5615 655 259 61 33 chrX 2144686 2145486 -160454444 + L1ME1 LINE L1 2926 3896 -2250 1922 254 44 72 chrX 2145545 2146588 -160453342 + L1ME1 LINE L1 5011 6018 -148 1576 215 10 0 chrX 2146588 2146876 -160453054 - AluJo SINE Alu -21 291 1 1922 254 44 72 chrX 2146876 2146991 -160452939 + L1ME1 LINE L1 6018 6135 -31 21 36 0 0 chrX 2147891 2147919 -160452011 + AT_rich Low_complexity Low_complexity 1 28 0 204 67 0 0 chrX 2149510 2149540 -160450390 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chrX 2150138 2150165 -160449765 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chrX 2150425 2150462 -160449468 + AT_rich Low_complexity Low_complexity 1 37 0 748 167 6 6 chrX 2151285 2151459 -160448471 + CT-rich Low_complexity Low_complexity 1 174 0 502 209 12 11 chrX 2151504 2151769 -160448161 + CT-rich Low_complexity Low_complexity 1 265 0 414 280 155 0 chrX 2151804 2151995 -160447935 + MLT1F LTR MaLR 191 411 -131 4639 51 9 3 chrX 2151995 2153018 -160446912 + MER11A LTR ERVK 1 1266 0 393 277 7 15 chrX 2153019 2153156 -160446774 + MLT1F LTR MaLR 432 567 0 2264 115 0 7 chrX 2153976 2154281 -160445649 - AluSx SINE Alu -9 303 1 370 203 0 13 chrX 2154312 2154391 -160445539 + L1MB3 LINE L1 5451 5528 -646 3952 34 0 0 chrX 2154420 2154888 -160445042 - L1PA5 LINE L1 -4 6150 5683 3029 165 29 14 chrX 2154888 2155320 -160444610 + L1MB3 LINE L1 5531 5979 -204 4998 75 6 3 chrX 2155320 2155978 -160443952 - PABL_A LTR ERV1 0 660 1 3029 165 29 14 chrX 2155978 2156167 -160443763 + L1MB3 LINE L1 5979 6164 -19 240 309 0 15 chrX 2156790 2156858 -160443072 + C-rich Low_complexity Low_complexity 6 72 0 546 184 68 0 chrX 2156961 2157064 -160442866 - FLAM_C SINE Alu -33 110 1 262 307 79 10 chrX 2158031 2158132 -160441798 + LTR67 LTR ERVL 63 170 -387 296 307 22 17 chrX 2158299 2158478 -160441452 + LTR67 LTR ERVL 372 551 -6 2018 141 0 10 chrX 2158628 2158932 -160440998 - AluJb SINE Alu -11 301 1 761 161 42 7 chrX 2159442 2159585 -160440345 + FRAM SINE Alu 27 174 -2 1417 262 39 34 chrX 2159589 2160031 -160439899 + LTR8 LTR ERV1 247 690 -1 1666 183 10 10 chrX 2160041 2160330 -160439600 - AluJo SINE Alu -19 293 5 700 325 97 37 chrX 2160575 2161119 -160438811 + L1M4 LINE L1 4361 4937 -1209 2252 157 55 14 chrX 2161153 2161593 -160438337 - LTR29 LTR ERV1 -25 597 140 1158 208 58 3 chrX 2162724 2163017 -160436913 - MER33 DNA MER1_type -15 309 1 1161 209 40 8 chrX 2163176 2163429 -160436501 + LTR8 LTR ERV1 1 261 -430 302 130 0 0 chrX 2164034 2164080 -160435850 - MER20 DNA MER1_type -142 77 32 184 304 138 14 chrX 2164301 2164439 -160435491 - L3 LINE CR1 -133 1444 1290 195 129 0 0 chrX 2164901 2164932 -160434998 + (TAA)n Simple_repeat Simple_repeat 1 31 0 627 310 61 9 chrX 2164953 2165166 -160434764 - MIR SINE MIR -26 236 13 32 43 0 0 chrX 2165620 2165666 -160434264 + GC_rich Low_complexity Low_complexity 1 46 0 1716 127 0 0 chrX 2165971 2166207 -160433723 - AluSg/x SINE Alu -6 306 71 233 204 11 45 chrX 2166235 2166323 -160433607 + (CGGGG)n Simple_repeat Simple_repeat 2 86 0 * 306 246 0 62 chrX 2166319 2166498 -160433432 + (CCCCG)n Simple_repeat Simple_repeat 2 169 0 240 204 39 19 chrX 2166580 2166683 -160433247 + (CCCG)n Simple_repeat Simple_repeat 4 108 0 * 322 200 18 53 chrX 2166631 2166801 -160433129 + (CCCCG)n Simple_repeat Simple_repeat 3 166 0 2023 114 0 21 chrX 2216980 2217269 -160382661 + AluJb SINE Alu 22 304 -8 1424 191 61 50 chrX 2217401 2217762 -160382168 - MER47A DNA MER2_type -1 365 1 221 288 18 45 chrX 2217834 2217945 -160381985 + (TCCCG)n Simple_repeat Simple_repeat 3 110 0 216 274 0 0 chrX 2218025 2218076 -160381854 + CT-rich Low_complexity Low_complexity 2 52 0 1138 161 124 9 chrX 2218567 2218828 -160381102 + L1MC1 LINE L1 5727 5912 -252 21 36 0 0 chrX 2218841 2218869 -160381061 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 2218956 2218977 -160380953 + GC_rich Low_complexity Low_complexity 1 21 0 243 215 46 0 chrX 2219063 2219128 -160380802 + C-rich Low_complexity Low_complexity 2 69 0 29 0 0 0 chrX 2219161 2219190 -160380740 + GC_rich Low_complexity Low_complexity 1 29 0 618 284 51 11 chrX 2220132 2220407 -160379523 - L1PA16 LINE L1 0 6166 5881 22 0 0 0 chrX 2220758 2220780 -160379150 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 2221352 2221373 -160378557 + AT_rich Low_complexity Low_complexity 1 21 0 1343 94 0 0 chrX 2221724 2221894 -160378036 - AluSg/x SINE Alu -13 299 130 1602 153 0 4 chrX 2223141 2223416 -160376514 + L1MC1 LINE L1 6050 6323 -10 213 94 0 0 chrX 2223771 2223803 -160376127 + (TG)n Simple_repeat Simple_repeat 2 33 0 2269 92 3 0 chrX 2223884 2224177 -160375753 + AluY SINE Alu 4 297 -14 704 177 33 6 chrX 2224927 2225108 -160374822 - L1MA7 LINE L1 0 6291 6106 990 149 6 0 chrX 2225111 2225272 -160374658 + L1M2 LINE L1 5531 5692 -599 1989 167 8 24 chrX 2225320 2225341 -160374589 - MLT1A1 LTR MaLR 0 365 345 1732 201 76 92 chrX 2225341 2225904 -160374026 + MLT2B3 LTR ERVL 1 554 0 1989 167 8 24 chrX 2225904 2226253 -160373677 - MLT1A1 LTR MaLR -20 345 1 2621 106 0 8 chrX 2226535 2226902 -160373028 - THE1B LTR MaLR 0 364 1 320 266 37 0 chrX 2226938 2227047 -160372883 - MLT1I LTR MaLR 0 409 297 336 48 0 0 chrX 2227770 2227812 -160372118 + (TG)n Simple_repeat Simple_repeat 1 42 0 784 222 48 42 chrX 2228178 2228882 -160371048 + L1MA4A LINE L1 5597 6180 0 2007 111 0 42 chrX 2229344 2229650 -160370280 + AluSx SINE Alu 1 293 -19 312 27 0 0 chrX 2229683 2229720 -160370210 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chrX 2229730 2229753 -160370177 + AT_rich Low_complexity Low_complexity 1 23 0 492 194 19 9 chrX 2230119 2230227 -160369703 - L1MB7 LINE L1 -223 5961 5853 427 229 25 49 chrX 2230238 2230360 -160369570 + L1M3 LINE L1 5521 5639 -541 180 0 0 0 chrX 2230481 2230501 -160369429 + (A)n Simple_repeat Simple_repeat 1 20 0 2287 95 0 0 chrX 2230708 2231002 -160368928 - AluSc SINE Alu -15 294 1 270 226 37 0 chrX 2231198 2231474 -160368456 + (TA)n Simple_repeat Simple_repeat 1 286 0 24 0 0 0 chrX 2231474 2231498 -160368432 + AT_rich Low_complexity Low_complexity 1 24 0 578 137 0 73 chrX 2231512 2231636 -160368294 + L1MB5 LINE L1 6045 6159 -15 394 88 44 44 chrX 2231745 2231904 -160368026 + (TA)n Simple_repeat Simple_repeat 1 159 0 242 256 33 11 chrX 2231904 2231994 -160367936 + L1MC4 LINE L1 6612 6703 -1339 249 260 0 0 chrX 2232001 2232078 -160367852 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 226 361 138 26 chrX 2232288 2232593 -160367337 + L3 LINE CR1 879 1217 -360 1867 125 3 36 chrX 2233806 2234106 -160365824 - MER4B LTR ERV1 0 610 321 494 56 113 0 chrX 2234106 2234177 -160365753 + MADE1 DNA Mariner 1 79 -1 * 1710 116 96 20 chrX 2234177 2234477 -160365453 - MER4B LTR ERV1 -287 323 1 184 179 64 0 chrX 2234477 2234555 -160365375 + (TA)n Simple_repeat Simple_repeat 1 83 0 201 205 36 24 chrX 2234586 2234669 -160365261 + (TA)n Simple_repeat Simple_repeat 1 84 0 198 143 0 0 chrX 2234815 2234850 -160365080 + (CA)n Simple_repeat Simple_repeat 2 36 0 249 196 20 0 chrX 2234921 2234972 -160364958 + (CA)n Simple_repeat Simple_repeat 2 53 0 311 332 99 9 chrX 2235309 2235520 -160364410 - L1MB7 LINE L1 -2167 5641 5412 668 294 13 20 chrX 2235575 2235878 -160364052 - AluYa5 SINE Alu 0 301 1 26 0 0 0 chrX 2235949 2235975 -160363955 + AT_rich Low_complexity Low_complexity 1 26 0 248 80 23 57 chrX 2236139 2236227 -160363703 + (TTTTTG)n Simple_repeat Simple_repeat 5 89 0 742 266 27 64 chrX 2236672 2237036 -160362894 + LTR40b LTR ERVL 139 462 0 40 96 0 6 chrX 2237374 2237425 -160362505 + AT_rich Low_complexity Low_complexity 1 51 -104 2314 80 0 19 chrX 2237425 2237737 -160362193 - AluY SINE Alu -5 306 1 40 96 0 6 chrX 2237737 2237841 -160362089 + AT_rich Low_complexity Low_complexity 51 155 0 228 346 16 24 chrX 2238518 2238645 -160361285 - MIR SINE MIR -110 152 27 757 230 14 78 chrX 2238951 2239168 -160360762 + MER8 DNA MER2_type 1 203 -36 247 286 15 15 chrX 2239461 2239594 -160360336 - AluSp SINE Alu -170 133 1 478 164 125 31 chrX 2239598 2239726 -160360204 + LOR1b LTR ERV1 32 171 -290 * 978 199 91 14 chrX 2239725 2239946 -160359984 + LOR1a LTR ERV1 260 497 0 3155 102 15 0 chrX 2240171 2240632 -160359298 + L1PA10 LINE L1 5699 6166 -2 2323 145 35 55 chrX 2241026 2241168 -160358762 - MSTC LTR MaLR -2 426 283 1627 177 0 55 chrX 2241168 2241479 -160358451 - AluJo SINE Alu -18 294 1 2323 145 35 55 chrX 2241479 2241771 -160358159 - MSTC LTR MaLR -145 283 1 216 221 52 52 chrX 2242468 2242545 -160357385 - MIR SINE MIR -55 207 131 200 198 49 25 chrX 2243207 2243288 -160356642 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 32 26 0 0 chrX 2243661 2243700 -160356230 + AT_rich Low_complexity Low_complexity 1 39 0 946 137 256 64 chrX 2243738 2244051 -160355879 - MLT1A2 LTR MaLR -1 373 1 24 32 0 0 chrX 2244261 2244292 -160355638 + AT_rich Low_complexity Low_complexity 1 31 0 302 275 6 22 chrX 2245039 2245217 -160354713 + CT-rich Low_complexity Low_complexity 3 177 0 2175 128 53 0 chrX 2246023 2246670 -160353260 - L1P4 LINE L1 -551 5610 4926 1539 263 31 73 chrX 2246721 2247770 -160352160 + L1MA3 LINE L1 2057 6585 0 423 161 0 119 chrX 2247779 2247897 -160352033 + MER61E LTR ERV1 5 108 -461 293 175 143 0 chrX 2248029 2248092 -160351838 + MER51A LTR ERV1 209 280 -354 * 1382 185 83 33 chrX 2248063 2248425 -160351505 + LTR25 LTR ERV1 415 794 0 2206 271 48 16 chrX 2248444 2249202 -160350728 + L1ME LINE L1 2778 3575 -2571 1710 215 18 3 chrX 2249202 2249584 -160350346 - MLT1B LTR MaLR 0 390 3 2206 271 48 16 chrX 2249584 2249788 -160350142 + L1ME LINE L1 3575 3771 -2375 2043 246 35 42 chrX 2249789 2250509 -160349421 + L1ME LINE L1 3665 4379 -1767 240 271 14 0 chrX 2250602 2250672 -160349258 + L1ME LINE L1 5715 5785 -336 251 346 122 19 chrX 2250903 2251059 -160348871 - MIR SINE MIR -76 186 15 186 43 0 0 chrX 2251488 2251511 -160348419 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 274 184 26 0 chrX 2251824 2251900 -160348030 + CT-rich Low_complexity Low_complexity 4 81 0 2433 81 3 0 chrX 2253107 2253415 -160346515 + AluSx SINE Alu 1 309 -3 709 97 0 10 chrX 2253979 2254082 -160345848 + AluJ/FLAM SINE Alu 1 102 -210 576 189 33 14 chrX 2254376 2254514 -160345416 - MLT1C LTR MaLR -16 488 330 1210 186 10 0 chrX 2254841 2255045 -160344885 - AluJb SINE Alu -7 305 100 1278 145 10 10 chrX 2255045 2255252 -160344678 + MLT1A1 LTR MaLR 157 363 -2 279 114 0 0 chrX 2255895 2255939 -160343991 + (CA)n Simple_repeat Simple_repeat 1 44 0 3159 154 11 12 chrX 2256607 2257167 -160342763 + L1MA8 LINE L1 5676 6234 -57 249 88 0 53 chrX 2257403 2257460 -160342470 + L1MA9 LINE L1 6237 6290 -1 210 37 0 0 chrX 2257649 2257676 -160342254 + (TG)n Simple_repeat Simple_repeat 1 27 0 1428 114 8 28 chrX 2259195 2259360 -160340570 - L1MA2 LINE L1 0 6304 6144 2089 134 10 0 chrX 2259360 2259666 -160340264 - AluSx SINE Alu -3 309 1 1428 114 8 28 chrX 2259666 2259754 -160340176 - L1MA2 LINE L1 -160 6144 6056 209 200 0 0 chrX 2260051 2260091 -160339839 + A-rich Low_complexity Low_complexity 2 41 0 2710 97 17 12 chrX 2260671 2261074 -160338856 - L1PB1 LINE L1 -1 6150 5746 3030 95 32 2 chrX 2261468 2261909 -160338021 + L1PA12 LINE L1 5714 6167 -1 260 0 0 54 chrX 2262234 2262271 -160337659 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2149 119 3 0 chrX 2262278 2262572 -160337358 + AluSg SINE Alu 2 296 -14 1379 80 80 5 chrX 2263989 2264213 -160335717 - L1MA2 LINE L1 -236 6068 5828 537 125 7 145 chrX 2264212 2264364 -160335566 + L1MA2 LINE L1 6169 6299 -5 * 239 342 101 25 chrX 2264635 2264793 -160335137 + MIR SINE MIR 20 189 -73 1608 225 25 95 chrX 2265027 2265443 -160334487 - L1ME1 LINE L1 -163 6003 5662 4108 150 95 8 chrX 2265443 2266203 -160333727 + LTR1B LTR ERV1 1 826 0 1608 225 25 95 chrX 2266203 2266546 -160333384 - L1ME1 LINE L1 -504 5662 5297 1082 270 31 24 chrX 2266614 2267029 -160332901 - L1MD3 LINE L1 -59 7936 7519 540 116 49 6 chrX 2267034 2267198 -160332732 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 295 154 31 74 chrX 2267201 2267363 -160332567 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 * 303 174 72 14 chrX 2267261 2267399 -160332531 + (TA)n Simple_repeat Simple_repeat 2 147 0 411 208 25 117 chrX 2267408 2267476 -160332454 - Tigger2 DNA MER2_type 0 2718 2664 2058 118 3 3 chrX 2267476 2267763 -160332167 + AluSx SINE Alu 1 287 -25 411 208 25 117 chrX 2267763 2267814 -160332116 - Tigger2 DNA MER2_type -54 2664 2610 332 172 0 0 chrX 2267814 2267872 -160332058 - Tigger2 DNA MER2_type -2660 58 1 720 283 65 47 chrX 2268047 2268492 -160331438 - LTR40c LTR ERVL -6 459 7 259 307 78 52 chrX 2268528 2268820 -160331110 - L1MCc LINE L1 -5970 453 145 1617 200 40 115 chrX 2268820 2269089 -160330841 - MLT2B3 LTR ERVL 0 554 352 2060 132 0 21 chrX 2269089 2269415 -160330515 + AluSx SINE Alu 1 320 0 1617 200 40 115 chrX 2269415 2269743 -160330187 - MLT2B3 LTR ERVL -202 352 1 259 307 78 52 chrX 2269743 2269874 -160330056 - L1MCc LINE L1 -6278 145 19 490 301 43 12 chrX 2271216 2271379 -160328551 + MER5B DNA MER1_type 6 173 -5 2193 75 7 14 chrX 2271601 2271894 -160328036 - AluSc SINE Alu -18 291 1 2295 96 65 63 chrX 2272106 2272553 -160327377 + LTR7 LTR ERV1 1 448 -2 18262 96 13 37 chrX 2272555 2275613 -160324317 + HERVH LTR ERV1 1 2987 -4726 817 149 20 0 chrX 2275607 2275755 -160324175 + HERVH LTR ERV1 3140 3290 -4423 * 3076 109 20 6 chrX 2275745 2276240 -160323690 + HERVH LTR ERV1 3492 3993 -3720 3972 149 1 3 chrX 2276242 2276905 -160323025 + HERVH LTR ERV1 4488 5149 -2564 1326 104 38 0 chrX 2276906 2277118 -160322812 + HERVH LTR ERV1 5600 5819 -1894 2688 64 5 13 chrX 2277118 2277511 -160322419 + HERVH LTR ERV1 7324 7713 0 2043 116 84 64 chrX 2277511 2277950 -160321980 + LTR7 LTR ERV1 1 448 -2 5417 68 4 1 chrX 2278155 2278844 -160321086 - LTR8 LTR ERV1 0 691 1 1826 182 17 63 chrX 2278972 2279100 -160320830 + L1MA7 LINE L1 5840 5972 -319 2421 66 3 0 chrX 2279100 2279401 -160320529 + AluY SINE Alu 1 302 -9 2458 191 130 20 chrX 2279402 2280056 -160319874 - LTR8A LTR ERV1 0 727 2 1826 182 17 63 chrX 2280056 2280398 -160319532 + L1MA7 LINE L1 5971 6290 -1 34 55 0 0 chrX 2280398 2280453 -160319477 + AT_rich Low_complexity Low_complexity 1 55 0 4064 71 2 42 chrX 2280490 2281067 -160318863 - MER41A LTR ERV1 0 554 1 1151 214 105 3 chrX 2281790 2282075 -160317855 + MER7A DNA MER2_type 35 346 0 503 196 10 0 chrX 2283315 2283412 -160316518 - MER90 LTR ERV1 0 575 478 670 219 38 65 chrX 2283412 2283704 -160316226 + MLT1D LTR MaLR 1 284 -221 293 168 44 7 chrX 2283790 2283927 -160316003 + (TA)n Simple_repeat Simple_repeat 2 143 0 249 205 24 0 chrX 2283970 2284097 -160315833 + (TA)n Simple_repeat Simple_repeat 2 131 0 558 236 7 0 chrX 2284137 2284281 -160315649 - L1MB4 LINE L1 -2 6178 6034 232 96 58 0 chrX 2284285 2284337 -160315593 - L1MB4 LINE L1 -163 6011 5957 1883 119 0 61 chrX 2284499 2284811 -160315119 + AluSx SINE Alu 1 293 -19 312 27 0 0 chrX 2284843 2284880 -160315050 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chrX 2284890 2284913 -160315017 + AT_rich Low_complexity Low_complexity 1 23 0 461 194 19 9 chrX 2285279 2285387 -160314543 - L1MB4 LINE L1 -223 5961 5853 390 239 0 46 chrX 2285398 2285507 -160314423 + L1M3 LINE L1 5521 5624 -556 180 0 0 0 chrX 2285641 2285661 -160314269 + (A)n Simple_repeat Simple_repeat 1 20 0 2310 95 0 0 chrX 2285869 2286164 -160313766 - AluSc SINE Alu -14 295 1 270 226 37 0 chrX 2286360 2286636 -160313294 + (TA)n Simple_repeat Simple_repeat 1 286 0 24 0 0 0 chrX 2286636 2286660 -160313270 + AT_rich Low_complexity Low_complexity 1 24 0 608 193 0 0 chrX 2286674 2286809 -160313121 + L1MB4 LINE L1 6044 6178 -2 382 94 50 38 chrX 2286907 2287066 -160312864 + (TA)n Simple_repeat Simple_repeat 2 162 0 350 256 33 11 chrX 2287066 2287156 -160312774 + L1MC4 LINE L1 6612 6703 -1339 249 260 0 0 chrX 2287163 2287240 -160312690 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 227 361 138 26 chrX 2287450 2287755 -160312175 + L3 LINE CR1 879 1217 -360 1794 180 41 22 chrX 2288804 2289171 -160310759 - MLT1A2 LTR MaLR 0 374 1 431 343 155 20 chrX 2290012 2290523 -160309407 - L2 LINE L2 -2318 996 417 1937 146 13 10 chrX 2290998 2291300 -160308630 + AluSx SINE Alu 1 303 -9 920 203 0 0 chrX 2291301 2291459 -160308471 + AluJo/FRAM SINE Alu 136 293 -19 317 171 0 14 chrX 2291519 2291589 -160308341 + (TA)n Simple_repeat Simple_repeat 1 69 0 450 287 0 0 chrX 2291741 2291849 -160308081 + Tigger3(Golem) DNA MER2_type 2921 3028 -1 1967 197 10 3 chrX 2291860 2292245 -160307685 - MER47B DNA MER2_type 0 418 31 1461 169 0 16 chrX 2292409 2292663 -160307267 + AluSx SINE Alu 63 312 0 197 159 23 0 chrX 2292664 2292708 -160307222 + (TA)n Simple_repeat Simple_repeat 2 46 0 211 196 18 27 chrX 2292853 2292965 -160306965 + (TA)n Simple_repeat Simple_repeat 1 111 0 267 103 0 0 chrX 2292965 2293004 -160306926 + (GA)n Simple_repeat Simple_repeat 2 40 0 1777 162 4 0 chrX 2294567 2294833 -160305097 + AluJb SINE Alu 35 301 -11 683 134 0 0 chrX 2295328 2295440 -160304490 + AluSg/x SINE Alu 190 301 -9 1443 261 42 18 chrX 2295579 2296127 -160303803 + L1ME1 LINE L1 5601 6161 -5 901 70 25 13 chrX 2296240 2296397 -160303533 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 439 215 42 3 chrX 2296413 2296725 -160303205 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 781 144 26 17 chrX 2296749 2297093 -160302837 + (TCTA)n Simple_repeat Simple_repeat 1 347 0 206 291 23 58 chrX 2297469 2297526 -160302404 - MIR SINE MIR -114 148 93 2373 74 0 3 chrX 2297526 2297823 -160302107 + AluSg SINE Alu 1 296 -14 206 291 23 58 chrX 2297823 2297851 -160302079 - MIR SINE MIR -169 93 66 681 177 33 6 chrX 2298573 2298754 -160301176 - L1MA7 LINE L1 0 6291 6106 939 149 6 0 chrX 2298757 2298918 -160301012 + L1M2 LINE L1 5531 5692 -599 1837 170 8 24 chrX 2298966 2298987 -160300943 - MLT1A1 LTR MaLR 0 365 345 1718 201 78 91 chrX 2298987 2299548 -160300382 + MLT2B3 LTR ERVL 1 554 0 1837 170 8 24 chrX 2299548 2299897 -160300033 - MLT1A1 LTR MaLR -20 345 1 2629 106 0 8 chrX 2300179 2300546 -160299384 - THE1B LTR MaLR 0 364 1 290 266 37 0 chrX 2300582 2300691 -160299239 - MLT1I LTR MaLR 0 409 297 336 48 0 0 chrX 2301414 2301456 -160298474 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 164 0 0 chrX 2301723 2301784 -160298146 - MADE1 DNA Mariner -2 78 18 296 283 5 38 chrX 2301788 2301972 -160297958 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 462 269 0 6 chrX 2301881 2302052 -160297878 + (TA)n Simple_repeat Simple_repeat 1 170 0 489 258 10 3 chrX 2302065 2302365 -160297565 + (TA)n Simple_repeat Simple_repeat 1 302 0 382 247 0 48 chrX 2302353 2302539 -160297391 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 * 466 284 6 0 chrX 2302548 2302717 -160297213 + (TA)n Simple_repeat Simple_repeat 1 170 0 1469 200 3 77 chrX 2302721 2303096 -160296834 - MER7A DNA MER2_type 0 346 2 2133 159 77 12 chrX 2303143 2303545 -160296385 + MSTA LTR MaLR 1 428 0 432 158 0 0 chrX 2304191 2304267 -160295663 + CT-rich Low_complexity Low_complexity 3 78 0 1161 82 6 16 chrX 2304269 2304451 -160295479 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2017 115 11 4 chrX 2304451 2304730 -160295200 - AluSq SINE Alu -32 281 1 186 224 0 0 chrX 2304754 2304803 -160295127 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 71 24 0 chrX 2305049 2305091 -160294839 + MADE1 DNA Mariner 1 43 -37 1528 194 61 0 chrX 2305104 2305397 -160294533 - AluSx SINE Alu -1 311 1 1172 197 5 0 chrX 2305835 2306053 -160293877 - L1PA15 LINE L1 -5 6160 5942 234 0 0 0 chrX 2307939 2307965 -160291965 + (TA)n Simple_repeat Simple_repeat 2 27 0 356 129 65 0 chrX 2308246 2308308 -160291622 - AluJ/FLAM SINE Alu -229 73 8 1895 143 16 0 chrX 2308308 2308615 -160291315 + L1PA16 LINE L1 5855 6166 0 632 163 10 0 chrX 2309690 2309788 -160290142 - FLAM_C SINE Alu -32 111 13 1597 153 0 4 chrX 2310511 2310786 -160289144 + L1MC1 LINE L1 6050 6323 -10 213 94 0 0 chrX 2311140 2311172 -160288758 + (TG)n Simple_repeat Simple_repeat 2 33 0 2464 74 3 0 chrX 2311250 2311560 -160288370 + AluY SINE Alu 1 361 0 258 120 40 0 chrX 2311560 2311610 -160288320 + GA-rich Low_complexity Low_complexity 4 180 0 1870 183 99 2 chrX 2312266 2312660 -160287270 + MSTB1 LTR MaLR 1 432 0 217 265 53 98 chrX 2312773 2312905 -160287025 - MER5A DNA MER1_type -22 167 42 194 358 40 61 chrX 2312783 2312931 -160286999 + MER5A DNA MER1_type 44 188 -1 * 1907 178 30 0 chrX 2313650 2314048 -160285882 + L1MA8 LINE L1 5882 6291 0 28 29 0 0 chrX 2314152 2314187 -160285743 + AT_rich Low_complexity Low_complexity 1 35 0 1220 151 165 62 chrX 2314491 2314763 -160285167 + AluJb SINE Alu 1 300 -2 1190 188 9 75 chrX 2315322 2315372 -160284558 - MLT1A1 LTR MaLR 0 365 313 1904 169 50 14 chrX 2315372 2315734 -160284196 + THE1C LTR MaLR 1 375 0 1190 188 9 75 chrX 2315734 2316002 -160283928 - MLT1A1 LTR MaLR -52 313 68 1603 185 15 0 chrX 2316003 2316333 -160283597 - MER47A DNA MER2_type -1 365 31 426 118 0 15 chrX 2316347 2316415 -160283515 - MLT1A1 LTR MaLR -304 70 4 417 277 15 34 chrX 2316733 2316939 -160282991 - L1ME LINE L1 -454 5777 5576 1626 178 0 44 chrX 2317041 2317362 -160282568 + AluJo SINE Alu 1 307 -5 385 322 61 20 chrX 2317404 2317699 -160282231 - L1ME LINE L1 -2133 4082 3776 1166 78 0 0 chrX 2317702 2317844 -160282086 - AluSp/q SINE Alu -16 297 156 210 71 0 0 chrX 2317950 2317978 -160281952 + (T)n Simple_repeat Simple_repeat 1 28 0 457 280 63 68 chrX 2318166 2318447 -160281483 - L1ME LINE L1 -2806 3409 3154 1743 198 0 3 chrX 2318447 2318750 -160281180 - AluJb SINE Alu -10 302 1 457 280 63 68 chrX 2318750 2319028 -160280902 - L1ME LINE L1 -3061 3154 2876 693 259 94 27 chrX 2319588 2319962 -160279968 + MER50 LTR ERV1 10 408 -326 1583 214 0 10 chrX 2320584 2320893 -160279037 + AluJo SINE Alu 1 306 -6 740 161 0 23 chrX 2321762 2321892 -160278038 + FRAM SINE Alu 47 173 -3 444 152 25 0 chrX 2321897 2321976 -160277954 + AluJo SINE Alu 56 136 -176 204 143 0 0 chrX 2325228 2325270 -160274660 + (TA)n Simple_repeat Simple_repeat 2 43 0 381 192 58 17 chrX 2325315 2325487 -160274443 + (TA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 2326396 2326418 -160273512 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chrX 2326546 2326588 -160273342 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrX 2326645 2326666 -160273264 + AT_rich Low_complexity Low_complexity 1 21 0 2162 258 50 83 chrX 2326740 2328975 -160270955 - L1MEc LINE L1 -3379 2836 718 919 270 39 32 chrX 2328982 2329040 -160270890 + L1M4 LINE L1 2692 2748 -3398 1991 142 53 11 chrX 2329040 2329400 -160270530 - THE1C LTR MaLR 0 375 1 919 270 39 32 chrX 2329400 2329807 -160270123 + L1M4 LINE L1 2748 3160 -2986 3254 104 16 22 chrX 2330202 2330712 -160269218 + MER84 LTR ERV1 1 507 0 2237 107 0 7 chrX 2331008 2331318 -160268612 + AluSc SINE Alu 1 308 -1 202 325 12 0 chrX 2331378 2331461 -160268469 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 * 207 232 0 18 chrX 2331406 2331462 -160268468 + (TA)n Simple_repeat Simple_repeat 1 55 0 230 200 24 24 chrX 2331463 2331548 -160268382 - L1MC4 LINE L1 -1339 6703 6619 299 269 11 0 chrX 2332764 2332857 -160267073 + (TG)n Simple_repeat Simple_repeat 1 94 0 2581 162 44 29 chrX 2332886 2333473 -160266457 + LTR8A LTR ERV1 11 606 -121 3638 119 22 10 chrX 2333473 2334071 -160265859 - MER41B LTR ERV1 0 635 31 418 198 139 30 chrX 2334071 2334172 -160265758 + AluJb SINE Alu 177 288 -24 276 75 19 0 chrX 2334297 2334350 -160265580 - L1MB3 LINE L1 -2 6181 6128 2068 139 3 3 chrX 2334382 2334692 -160265238 - AluSx SINE Alu -2 310 1 1117 174 34 65 chrX 2334692 2334986 -160264944 - L1MB3 LINE L1 -41 6142 5858 1062 231 22 19 chrX 2335176 2335492 -160264438 - MLT1C LTR MaLR -2 465 149 2528 80 3 0 chrX 2335492 2335841 -160264089 - L1PB1 LINE L1 -25 6126 5777 805 215 0 0 chrX 2335841 2336013 -160263917 - MLT1C LTR MaLR -293 174 3 1304 148 65 0 chrX 2336096 2336312 -160263618 - MER30 DNA MER1_type 0 230 1 223 276 9 95 chrX 2336686 2336802 -160263128 - MIR SINE MIR -70 192 87 2203 128 0 0 chrX 2337028 2337334 -160262596 - AluSx SINE Alu -6 306 1 362 205 0 0 chrX 2337796 2337879 -160262051 - L1MA4A LINE L1 -22 6281 6199 2091 210 51 30 chrX 2337928 2338500 -160261430 - L1MB4 LINE L1 0 6180 5597 1828 192 0 3 chrX 2338500 2338812 -160261118 - AluJb SINE Alu 0 312 2 2229 93 17 0 chrX 2338877 2339168 -160260762 + AluSx SINE Alu 1 296 -16 563 227 13 18 chrX 2339952 2340493 -160259437 + CT-rich Low_complexity Low_complexity 1 538 0 25 0 0 0 chrX 2341995 2342020 -160257910 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chrX 2342353 2342385 -160257545 + (CA)n Simple_repeat Simple_repeat 1 32 0 347 189 8 28 chrX 2342710 2342848 -160257082 + CT-rich Low_complexity Low_complexity 1 135 0 1625 139 8 11 chrX 2343013 2343279 -160256651 - AluJb SINE Alu -20 292 28 32 0 0 0 chrX 2343282 2343314 -160256616 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chrX 2343783 2343813 -160256117 + AT_rich Low_complexity Low_complexity 1 30 0 201 132 0 0 chrX 2343837 2343875 -160256055 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1910 118 59 0 chrX 2344358 2344689 -160255241 + AluSx SINE Alu 1 347 0 322 371 40 7 chrX 2345242 2345393 -160254537 - MIR SINE MIR -12 250 95 1735 249 56 6 chrX 2345769 2346250 -160253680 + MLT1D LTR MaLR 1 505 0 1634 196 3 10 chrX 2346649 2346709 -160253221 - AluJo SINE Alu 0 593 534 1185 0 22 39 chrX 2346709 2346891 -160253039 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1634 196 3 10 chrX 2346891 2347244 -160252686 - AluJo SINE Alu -59 534 1 490 293 21 21 chrX 2347330 2347518 -160252412 - MER5A DNA MER1_type 0 189 2 616 202 6 52 chrX 2347602 2347775 -160252155 + MER20 DNA MER1_type 30 194 -25 441 107 13 0 chrX 2349647 2349722 -160250208 + L1PB3 LINE L1 6070 6145 -9 570 29 0 0 chrX 2349722 2349790 -160250140 + (TA)n Simple_repeat Simple_repeat 2 69 0 888 136 17 11 chrX 2353027 2353203 -160246727 + CT-rich Low_complexity Low_complexity 3 179 0 931 144 6 6 chrX 2353249 2353422 -160246508 + CT-rich Low_complexity Low_complexity 4 176 0 1570 181 0 24 chrX 2353431 2353718 -160246212 - AluJo SINE Alu -32 280 1 672 219 45 60 chrX 2353721 2354081 -160245849 + LTR52 LTR ERVL 17 405 -16 233 332 63 35 chrX 2354119 2354405 -160245525 - MLT1L LTR MaLR -321 294 1 1943 140 3 7 chrX 2355666 2355982 -160243948 - AluSx SINE Alu 0 315 1 22 56 0 0 chrX 2356923 2356959 -160242971 + AT_rich Low_complexity Low_complexity 1 36 0 666 171 34 11 chrX 2357588 2357764 -160242166 + GA-rich Low_complexity Low_complexity 1 180 0 254 263 0 0 chrX 2357765 2357822 -160242108 + A-rich Low_complexity Low_complexity 2 58 0 1631 186 13 3 chrX 2357948 2358254 -160241676 - AluJb SINE Alu -3 309 1 500 204 0 0 chrX 2358471 2358601 -160241329 - FRAM SINE Alu 0 185 56 235 272 12 12 chrX 2358683 2358764 -160241166 + MIR3 SINE MIR 125 205 -3 22 35 0 0 chrX 2360902 2360931 -160238999 + AT_rich Low_complexity Low_complexity 1 29 0 191 358 37 9 chrX 2361691 2361800 -160238130 - MIR SINE MIR -62 146 35 1976 132 46 32 chrX 2361804 2362174 -160237756 - THE1C LTR MaLR 0 375 1 594 156 13 18 chrX 2362201 2362328 -160237602 + L1P4 LINE L1 5668 5792 -373 450 207 46 63 chrX 2362445 2362619 -160237311 - THE1C LTR MaLR -185 190 20 261 0 0 0 chrX 2362989 2363018 -160236912 + (T)n Simple_repeat Simple_repeat 1 29 0 1509 169 42 42 chrX 2363032 2363176 -160236754 + MLT1B LTR MaLR 1 144 -246 2524 118 3 3 chrX 2363176 2363539 -160236391 - THE1B LTR MaLR 0 364 2 1509 169 42 42 chrX 2363539 2363731 -160236199 + MLT1B LTR MaLR 143 337 -53 14576 158 8 6 chrX 2363746 2366365 -160233565 - L1P3 LINE L1 -2574 5010 2386 7653 143 15 7 chrX 2366400 2367599 -160232331 - L1P3 LINE L1 -4734 2264 991 2132 120 9 125 chrX 2367599 2367878 -160232052 + Tigger7 DNA MER2_type 2191 2400 -187 2629 113 0 0 chrX 2367878 2368240 -160231690 - THE1B LTR MaLR 0 364 3 2132 120 9 125 chrX 2368240 2368409 -160231521 + Tigger7 DNA MER2_type 2400 2587 0 1159 250 68 41 chrX 2368435 2368803 -160231127 + MLT1E3 LTR MaLR 236 613 -11 1397 185 24 20 chrX 2368810 2369107 -160230823 + LTR29 LTR ERV1 321 618 -4 404 344 39 18 chrX 2369258 2369543 -160230387 + L2 LINE L2 2189 2479 -835 2434 74 0 10 chrX 2369601 2369910 -160230020 + AluSq SINE Alu 1 306 -7 1487 174 79 8 chrX 2370197 2370462 -160229468 + AluJb SINE Alu 13 296 -16 1007 188 0 0 chrX 2370462 2370632 -160229298 + AluJo/FRAM SINE Alu 134 303 -9 773 186 118 10 chrX 2370861 2371065 -160228865 - AluJo SINE Alu 0 312 87 209 299 112 30 chrX 2371073 2371207 -160228723 + L2 LINE L2 1955 2099 -1215 5178 168 18 8 chrX 2372097 2372986 -160226944 - MER4D LTR ERV1 -5 898 1 181 333 48 0 chrX 2373326 2373410 -160226520 + MIR SINE MIR 158 245 -17 195 42 0 0 chrX 2373459 2373483 -160226447 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1529 152 45 26 chrX 2373486 2373755 -160226175 - AluJo SINE Alu -30 282 9 195 271 21 0 chrX 2373960 2374008 -160225922 - MIR SINE MIR -86 122 74 22 35 0 0 chrX 2374109 2374138 -160225792 + AT_rich Low_complexity Low_complexity 1 29 0 191 321 18 0 chrX 2374258 2374314 -160225616 + L2 LINE L2 3184 3240 -32 416 193 0 50 chrX 2374354 2374535 -160225395 + (TA)n Simple_repeat Simple_repeat 1 172 0 594 133 6 60 chrX 2374551 2374883 -160225047 + (TA)n Simple_repeat Simple_repeat 1 313 0 654 103 5 60 chrX 2374935 2375119 -160224811 + (TA)n Simple_repeat Simple_repeat 1 174 0 302 275 6 22 chrX 2375412 2375590 -160224340 + GA-rich Low_complexity Low_complexity 3 177 0 1178 197 5 0 chrX 2377334 2377552 -160222378 - L1PA15 LINE L1 -5 6160 5942 576 189 33 14 chrX 2378295 2378433 -160221497 - MLT1C LTR MaLR -16 488 330 29 0 0 0 chrX 2379328 2379357 -160220573 + AT_rich Low_complexity Low_complexity 1 29 0 887 182 6 50 chrX 2379375 2379556 -160220374 - AluJb SINE Alu -14 298 126 1075 160 6 6 chrX 2380399 2380580 -160219350 + AluJb SINE Alu 132 312 0 2709 99 3 3 chrX 2381212 2381587 -160218343 + THE1C LTR MaLR 1 375 0 21 36 0 0 chrX 2381590 2381618 -160218312 + AT_rich Low_complexity Low_complexity 1 28 0 237 180 0 0 chrX 2381799 2381849 -160218081 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 2196 97 7 10 chrX 2381927 2382242 -160217688 + AluY SINE Alu 1 314 0 21 0 0 0 chrX 2382256 2382277 -160217653 + AT_rich Low_complexity Low_complexity 1 21 0 1227 84 0 0 chrX 2382596 2382751 -160217179 + THE1B LTR MaLR 210 364 0 257 292 9 0 chrX 2382922 2383035 -160216895 - L1M4 LINE L1 -3178 2968 2855 4808 92 5 9 chrX 2385103 2385773 -160214157 - PABL_B LTR ERV1 0 667 1 2295 220 24 67 chrX 2386368 2386563 -160213367 - L1MA10 LINE L1 -1 6333 6131 219 69 0 0 chrX 2386563 2386592 -160213338 + (TG)n Simple_repeat Simple_repeat 2 30 0 2295 220 24 67 chrX 2386592 2387065 -160212865 - L1MA10 LINE L1 -203 6131 5694 2305 94 40 37 chrX 2387065 2387439 -160212491 - THE1C LTR MaLR 0 375 1 2295 220 24 67 chrX 2387439 2387473 -160212457 - L1MA10 LINE L1 -640 5694 5660 213 39 0 0 chrX 2388214 2388240 -160211690 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 239 245 11 0 chrX 2388290 2388384 -160211546 + (TA)n Simple_repeat Simple_repeat 2 96 0 202 200 0 0 chrX 2388396 2388431 -160211499 + (CA)n Simple_repeat Simple_repeat 2 36 0 297 276 13 0 chrX 2389675 2389751 -160210179 + GA-rich Low_complexity Low_complexity 2 78 0 4699 161 55 30 chrX 2391520 2391700 -160208230 + L1MB3 LINE L1 5004 5178 -1005 1953 142 4 0 chrX 2391700 2391981 -160207949 + AluSq SINE Alu 1 282 -31 201 74 0 0 chrX 2391984 2392011 -160207919 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4699 161 55 30 chrX 2392011 2392606 -160207324 + L1MB3 LINE L1 5179 5808 -375 1938 137 64 17 chrX 2392606 2392964 -160206966 + THE1C LTR MaLR 1 375 0 4699 161 55 30 chrX 2392964 2393348 -160206582 + L1MB3 LINE L1 5808 6181 -2 273 261 23 0 chrX 2393454 2393542 -160206388 - L1MA10 LINE L1 -3 6331 6242 21 0 0 0 chrX 2393542 2393563 -160206367 + AT_rich Low_complexity Low_complexity 1 21 0 430 252 18 0 chrX 2393751 2393862 -160206068 - L1M4 LINE L1 -2506 3640 3528 332 326 22 27 chrX 2393911 2394095 -160205835 - L1M4 LINE L1 -2627 3519 3337 1971 199 33 25 chrX 2394134 2394681 -160205249 - MLT2A2 LTR ERVL 0 554 1 790 269 9 9 chrX 2394681 2394896 -160205034 + MLT2D LTR ERVL 143 357 -57 515 190 41 19 chrX 2394898 2395215 -160204715 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 237 124 56 11 chrX 2395228 2395317 -160204613 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 253 80 20 20 chrX 2395364 2395414 -160204516 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 250 163 0 0 chrX 2395419 2395462 -160204468 + MLT2D LTR ERVL 420 462 -2 203 281 18 0 chrX 2396242 2396299 -160203631 + CT-rich Low_complexity Low_complexity 2 59 0 206 365 78 0 chrX 2396311 2396426 -160203504 - L2 LINE L2 -1 3271 3148 1777 162 42 48 chrX 2397467 2397844 -160202086 + THE1C LTR MaLR 1 375 0 925 200 47 5 chrX 2397969 2398347 -160201583 + L1MB3 LINE L1 5574 6081 -102 1940 215 149 33 chrX 2398349 2399022 -160200908 + LTR1B LTR ERV1 1 955 -65 345 104 0 125 chrX 2399084 2399142 -160200788 + L1MB4 LINE L1 6094 6137 -43 2413 85 0 0 chrX 2399142 2399437 -160200493 + AluY SINE Alu 1 295 -16 345 104 0 125 chrX 2399437 2399474 -160200456 + L1MB4 LINE L1 6137 6177 -3 1168 96 0 34 chrX 2399855 2400032 -160199898 - L1PA11 LINE L1 0 6174 6004 1940 137 0 29 chrX 2400062 2400368 -160199562 - AluSg SINE Alu -13 297 1 1466 176 36 102 chrX 2400875 2401266 -160198664 - MLT1A1 LTR MaLR 0 365 1 2032 149 0 3 chrX 2401353 2401648 -160198282 + AluSx SINE Alu 1 294 -18 554 129 43 0 chrX 2402768 2402861 -160197069 - L1PB1 LINE L1 -1 6150 6054 26 64 0 0 chrX 2402896 2402943 -160196987 + AT_rich Low_complexity Low_complexity 1 47 0 350 168 57 3 chrX 2402959 2403324 -160196606 + (TA)n Simple_repeat Simple_repeat 1 384 0 273 184 57 0 chrX 2403344 2403502 -160196428 + (TA)n Simple_repeat Simple_repeat 2 168 0 205 218 18 0 chrX 2403526 2403581 -160196349 + (TTATA)n Simple_repeat Simple_repeat 3 58 0 245 98 24 0 chrX 2403597 2403638 -160196292 + (TG)n Simple_repeat Simple_repeat 1 42 0 2776 168 62 30 chrX 2405303 2405813 -160194117 + L1MC1 LINE L1 5727 6254 -79 1743 157 6 39 chrX 2405813 2406125 -160193805 + AluJb SINE Alu 1 302 -10 2776 168 62 30 chrX 2406125 2406188 -160193742 + L1MC1 LINE L1 6254 6314 -19 2258 82 4 0 chrX 2406452 2406795 -160193135 + AluSg SINE Alu 1 344 0 3245 89 22 26 chrX 2408801 2409306 -160190624 - L1PA13 LINE L1 -5 6158 5656 234 0 0 0 chrX 2409933 2409959 -160189971 + (A)n Simple_repeat Simple_repeat 1 26 0 34 65 0 0 chrX 2410568 2410630 -160189300 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chrX 2410722 2410750 -160189180 + AT_rich Low_complexity Low_complexity 1 28 0 1094 153 11 11 chrX 2410929 2411106 -160188824 - AluJb SINE Alu -2 310 134 408 40 0 0 chrX 2411106 2411156 -160188774 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 2338 64 0 3 chrX 2411156 2411438 -160188492 - AluY SINE Alu -30 281 1 1296 164 102 79 chrX 2411452 2411757 -160188173 - AluJo SINE Alu 0 312 1 28 48 0 0 chrX 2412058 2412100 -160187830 + GC_rich Low_complexity Low_complexity 1 42 0 27 35 0 0 chrX 2412168 2412197 -160187733 + GC_rich Low_complexity Low_complexity 1 29 0 53 40 0 0 chrX 2412298 2412372 -160187558 + GC_rich Low_complexity Low_complexity 1 74 0 255 319 28 14 chrX 2412615 2412759 -160187171 - MIR SINE MIR -12 250 105 1196 137 60 17 chrX 2413724 2413957 -160185973 + MER39B LTR ERV1 411 653 0 3274 125 4 8 chrX 2414210 2414705 -160185225 + MER1A DNA MER1_type 37 529 0 231 286 32 0 chrX 2414712 2414775 -160185155 + L2 LINE L2 3243 3307 -6 722 206 16 0 chrX 2415080 2415226 -160184704 + FLAM_C SINE Alu 1 148 0 223 203 0 94 chrX 2415605 2415669 -160184261 - L3 LINE CR1 -754 823 766 806 150 6 17 chrX 2415784 2415964 -160183966 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 225 175 0 0 chrX 2415967 2416007 -160183923 + CT-rich Low_complexity Low_complexity 1 40 0 1999 151 66 45 chrX 2416017 2416441 -160183489 + Tigger2a DNA MER2_type 1 433 -1 294 29 0 0 chrX 2416442 2416477 -160183453 + (TG)n Simple_repeat Simple_repeat 2 36 0 376 341 54 47 chrX 2416525 2416801 -160183129 - L3 LINE CR1 -934 643 366 2208 107 3 19 chrX 2417732 2418040 -160181890 + AluSx SINE Alu 1 303 -9 2417 64 3 7 chrX 2418044 2418342 -160181588 + AluSp SINE Alu 1 297 -16 416 211 0 0 chrX 2419032 2419108 -160180822 + FLAM_A SINE Alu 46 121 -21 1590 185 7 26 chrX 2419115 2419417 -160180513 + AluJo SINE Alu 1 296 -16 2128 129 3 3 chrX 2419538 2419833 -160180097 + AluSx SINE Alu 1 295 -17 357 24 0 0 chrX 2419833 2419875 -160180055 + (TA)n Simple_repeat Simple_repeat 2 43 0 1756 189 30 30 chrX 2420091 2420462 -160179468 - MLT1A2 LTR MaLR 0 374 4 949 229 122 61 chrX 2420542 2421205 -160178725 - LTR27 LTR ERV1 0 636 3 351 147 93 0 chrX 2421961 2422036 -160177894 + MLT1I LTR MaLR 321 402 -7 1188 198 28 4 chrX 2423358 2423606 -160176324 + L1MB5 LINE L1 5913 6166 -8 1193 204 0 9 chrX 2424107 2424323 -160175607 + AluJo SINE Alu 1 214 -98 2189 188 19 24 chrX 2425046 2425509 -160174421 - MLT1C LTR MaLR -1 466 6 191 286 32 95 chrX 2425717 2425843 -160174087 - L2 LINE L2 -190 3082 2965 1869 93 53 50 chrX 2426774 2427097 -160172833 + THE1B LTR MaLR 41 364 0 3538 42 0 0 chrX 2427512 2427937 -160171993 + L1PA6 LINE L1 5729 6153 -1 635 303 40 14 chrX 2427943 2428293 -160171637 + L1MC3 LINE L1 6808 7166 -619 508 295 70 29 chrX 2428562 2428979 -160170951 + L1MC/D LINE L1 5284 5717 -2278 609 216 47 7 chrX 2429349 2429497 -160170433 + MER47A DNA MER2_type 1 154 -212 1662 121 24 34 chrX 2429597 2429810 -160170120 + LTR8A LTR ERV1 43 254 -473 2806 81 3 16 chrX 2429810 2430179 -160169751 + THE1B LTR MaLR 1 364 0 1662 121 24 34 chrX 2430179 2430262 -160169668 + LTR8A LTR ERV1 254 336 -391 2700 142 76 6 chrX 2430262 2430735 -160169195 - MER84 LTR ERV1 0 507 2 323 183 28 14 chrX 2430735 2430806 -160169124 - MER84 LTR ERVI -433 74 3 1241 160 106 83 chrX 2430808 2431195 -160168735 + LTR8A LTR ERV1 332 727 0 3056 180 56 3 chrX 2431421 2432011 -160167919 - LTR26E LTR ERV1 0 622 2 1268 179 112 166 chrX 2432377 2432977 -160166953 + LTR8A LTR ERV1 1 551 -176 3206 123 16 12 chrX 2432977 2433488 -160166442 - MER75 DNA T2_type 0 514 2 1268 179 112 166 chrX 2433488 2433656 -160166274 + LTR8A LTR ERV1 551 727 0 1543 193 21 17 chrX 2434718 2435008 -160164922 - AluJb SINE Alu -21 291 1 2973 81 26 71 chrX 2435177 2435576 -160164354 - L1PB1 LINE L1 0 6151 5777 351 0 0 0 chrX 2435576 2435615 -160164315 + (TG)n Simple_repeat Simple_repeat 2 40 0 2973 81 26 71 chrX 2435615 2435710 -160164220 - L1PB1 LINE L1 -374 5777 5679 987 180 9 18 chrX 2435982 2436199 -160163731 - L1MB2 LINE L1 -8 6163 5949 864 205 0 0 chrX 2437025 2437186 -160162744 + AluJb SINE Alu 137 297 -15 26 30 0 0 chrX 2437402 2437435 -160162495 + AT_rich Low_complexity Low_complexity 1 33 0 1639 203 11 34 chrX 2438100 2438525 -160161405 + MLT2B1 LTR ERVL 1 464 -56 2441 178 45 0 chrX 2438525 2438987 -160160943 - L1PB4 LINE L1 -4 6152 5670 1639 203 11 34 chrX 2438987 2439043 -160160887 + MLT2B1 LTR ERVL 464 520 0 29 28 0 0 chrX 2439848 2439884 -160160046 + AT_rich Low_complexity Low_complexity 1 36 0 220 189 38 0 chrX 2439922 2439975 -160159955 + (TA)n Simple_repeat Simple_repeat 1 55 0 1569 157 35 35 chrX 2440028 2440165 -160159765 + AluJo SINE Alu 1 137 -175 2312 105 0 0 chrX 2440165 2440471 -160159459 + AluSx SINE Alu 1 306 -6 1569 157 35 35 chrX 2440471 2440619 -160159311 + AluJo SINE Alu 136 286 -26 237 65 0 0 chrX 2440624 2440655 -160159275 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 526 244 103 0 chrX 2441262 2441418 -160158512 + L1MB5 LINE L1 5452 5623 -557 1916 235 14 6 chrX 2441709 2442194 -160157736 + L1MB5 LINE L1 5618 6106 -68 2805 145 21 53 chrX 2443997 2444527 -160155403 - L1PA16 LINE L1 0 6166 5654 353 280 100 72 chrX 2444902 2445263 -160154667 - L2 LINE L2 -2111 1203 833 885 207 15 0 chrX 2445979 2446177 -160153753 - L1MA7 LINE L1 -36 6255 6055 480 209 0 0 chrX 2446184 2446289 -160153641 - L1MB4 LINE L1 -10 6170 6066 29 101 0 0 chrX 2446300 2446399 -160153531 + AT_rich Low_complexity Low_complexity 1 99 0 7622 22 6 0 chrX 2446762 2448121 -160151809 + L1PA4 LINE L1 4790 6153 -2 25 31 0 0 chrX 2448721 2448753 -160151177 + AT_rich Low_complexity Low_complexity 1 32 0 576 233 16 0 chrX 2449354 2449483 -160150447 + MLT1C LTR MaLR 331 461 -6 740 248 13 9 chrX 2449488 2449718 -160150212 - MER33 DNA MER1_type -84 240 10 2091 241 95 40 chrX 2449736 2450517 -160149413 + LTR1B LTR ERV1 3 826 0 3130 128 4 0 chrX 2450694 2451186 -160148744 - MER75 DNA T2_type -20 494 1 252 0 0 0 chrX 2451804 2451832 -160148098 + (A)n Simple_repeat Simple_repeat 1 28 0 248 194 0 65 chrX 2451832 2451894 -160148036 - MER58A DNA MER1_type -21 86 29 24 0 0 0 chrX 2452065 2452089 -160147841 + AT_rich Low_complexity Low_complexity 1 24 0 248 291 19 19 chrX 2452233 2452336 -160147594 + (CATA)n Simple_repeat Simple_repeat 1 103 0 397 289 20 0 chrX 2452336 2452485 -160147445 - Zaphod DNA AcHobo -3435 596 445 2223 139 0 0 chrX 2452486 2452787 -160147143 - AluSx SINE Alu -11 301 1 686 262 47 83 chrX 2452994 2453029 -160146901 - Zaphod DNA AcHobo -3622 409 374 204 67 0 0 chrX 2453029 2453059 -160146871 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 686 262 47 83 chrX 2453059 2453432 -160146498 - Zaphod DNA AcHobo -3657 374 16 23 0 0 0 chrX 2453484 2453507 -160146423 + AT_rich Low_complexity Low_complexity 1 23 0 742 30 0 10 chrX 2453508 2453607 -160146323 - L1MA4A LINE L1 -10 6293 6196 284 127 18 0 chrX 2453985 2454040 -160145890 + (CAAT)n Simple_repeat Simple_repeat 1 56 0 401 232 0 10 chrX 2454262 2454361 -160145569 - MLT1C LTR MaLR -5 462 365 1322 241 17 17 chrX 2454586 2454943 -160144987 - MLT1C LTR MaLR -104 363 7 24 0 0 0 chrX 2457258 2457282 -160142648 + AT_rich Low_complexity Low_complexity 1 24 0 1755 177 0 4 chrX 2457419 2457696 -160142234 + AluJo SINE Alu 15 290 -22 45 19 0 0 chrX 2457711 2457763 -160142167 + AT_rich Low_complexity Low_complexity 1 52 0 988 231 57 102 chrX 2457841 2458271 -160141659 + MLT1C LTR MaLR 1 408 -59 1756 199 3 0 chrX 2458271 2458573 -160141357 + AluJb SINE Alu 1 303 -9 988 231 57 102 chrX 2458573 2458631 -160141299 + MLT1C LTR MaLR 408 467 0 23 0 0 0 chrX 2458780 2458803 -160141127 + AT_rich Low_complexity Low_complexity 1 23 0 1625 173 52 4 chrX 2458924 2459217 -160140713 - AluJo SINE Alu 0 306 1 2345 136 155 0 chrX 2459217 2459694 -160140236 - L1MA8 LINE L1 -141 6150 5600 301 279 82 71 chrX 2459755 2459981 -160139949 - L1M4 LINE L1 -744 5402 5171 2084 134 0 0 chrX 2459981 2460272 -160139658 - AluSx SINE Alu -15 297 7 301 279 82 71 chrX 2460272 2460339 -160139591 - L1M4 LINE L1 -975 5171 5106 24 53 0 0 chrX 2460348 2460386 -160139544 + AT_rich Low_complexity Low_complexity 1 38 0 692 286 82 70 chrX 2460705 2461108 -160138822 + MLT1G1 LTR MaLR 16 402 -153 2851 186 14 80 chrX 2461108 2461845 -160138085 - LTR8 LTR ERV1 0 691 4 692 286 82 70 chrX 2461845 2462000 -160137930 + MLT1G1 LTR MaLR 402 554 -1 2106 114 28 0 chrX 2462012 2462301 -160137629 - AluSq SINE Alu -16 297 1 475 272 71 48 chrX 2463339 2463607 -160136323 - L1M4 LINE L1 -3737 2409 2136 2234 113 3 0 chrX 2465200 2465509 -160134421 - AluSx SINE Alu 0 312 3 430 171 0 0 chrX 2465520 2465596 -160134334 - L1PA10 LINE L1 -1 6167 6092 2533 102 15 63 chrX 2465961 2466439 -160133491 + L1MA3 LINE L1 5850 6304 -1 22 0 0 0 chrX 2466439 2466461 -160133469 + AT_rich Low_complexity Low_complexity 1 22 0 237 289 0 0 chrX 2467532 2467584 -160132346 - L2 LINE L2 -7 3265 3214 645 155 0 0 chrX 2467984 2468087 -160131843 - FLAM_A SINE Alu -10 132 30 2126 126 86 8 chrX 2469620 2469992 -160129938 + MER57A LTR ERV1 3 403 0 1120 167 29 5 chrX 2470290 2470494 -160129436 + L1PB3 LINE L1 5937 6145 -9 25 0 0 0 chrX 2470494 2470519 -160129411 + AT_rich Low_complexity Low_complexity 1 25 0 744 271 0 38 chrX 2470529 2470739 -160129191 - MLT1A2 LTR MaLR 0 374 173 363 115 44 26 chrX 2470751 2470864 -160129066 + (CAGAGA)n Simple_repeat Simple_repeat 4 118 0 537 111 22 44 chrX 2470887 2470913 -160129017 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 -150 2126 57 40 47 chrX 2470913 2471212 -160128718 + AluY SINE Alu 1 297 -14 537 111 22 44 chrX 2471212 2471365 -160128565 + (CAGAGA)n Simple_repeat Simple_repeat 30 180 0 * 676 82 70 3 chrX 2471354 2471677 -160128253 + GA-rich Low_complexity Low_complexity 1 344 0 822 189 12 37 chrX 2471730 2471894 -160128036 - MLT1A2 LTR MaLR -213 161 2 2026 118 3 43 chrX 2472366 2472689 -160127241 - MER4A LTR ERV1 0 664 355 2236 101 11 46 chrX 2472727 2473094 -160126836 - MER4A LTR ERV1 -308 356 3 48 0 0 0 chrX 2473094 2473142 -160126788 + AT_rich Low_complexity Low_complexity 1 48 0 852 160 0 14 chrX 2474039 2474183 -160125747 - FRAM SINE Alu -10 166 25 250 202 71 60 chrX 2475055 2475139 -160124791 + L2 LINE L2 3227 3311 -2 888 224 72 89 chrX 2475297 2475646 -160124284 + Charlie1a DNA MER1_type 1 343 -1112 * 3252 194 55 52 chrX 2475639 2476293 -160123637 + Charlie1a DNA MER1_type 464 1124 -1637 1616 143 0 109 chrX 2476293 2476643 -160123287 + AluJo SINE Alu 1 312 0 3252 194 55 52 chrX 2476643 2476976 -160122954 + Charlie1a DNA MER1_type 1124 1454 -1 1883 173 127 2 chrX 2477297 2477707 -160122223 + MER65C LTR ERV1 1 461 0 21 71 0 0 chrX 2478012 2478054 -160121876 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chrX 2478520 2478545 -160121385 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chrX 2478559 2478601 -160121329 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chrX 2478643 2478670 -160121260 + AT_rich Low_complexity Low_complexity 1 27 0 208 321 22 30 chrX 2478882 2479016 -160120914 + (CATATA)n Simple_repeat Simple_repeat 5 137 0 220 271 0 0 chrX 2478967 2479015 -160120915 + (CA)n Simple_repeat Simple_repeat 1 48 0 3214 129 20 0 chrX 2479502 2479998 -160119932 - MER84 LTR ERV1 0 507 2 365 219 39 70 chrX 2480077 2480205 -160119725 - L1MC4 LINE L1 -8 8034 7911 546 217 35 7 chrX 2480338 2480481 -160119449 - L1MC4 LINE L1 -165 7877 7731 1342 258 100 67 chrX 2480482 2481505 -160118425 - L1MC4a LINE L1 -1389 6419 5363 345 331 139 14 chrX 2481605 2482028 -160117902 - L1MC4a LINE L1 -904 5242 4767 1594 170 4 4 chrX 2482133 2482398 -160117532 - AluJb SINE Alu -45 267 3 389 200 29 122 chrX 2483818 2484023 -160115907 + MER53 DNA DNA 2 187 -2 251 384 53 30 chrX 2484614 2484747 -160115183 - L2 LINE L2 -8 3264 3129 241 194 69 28 chrX 2485735 2485807 -160114123 + L1MC4 LINE L1 6629 6703 -1339 323 167 0 14 chrX 2485929 2485939 -160113991 + (TA)n Simple_repeat Simple_repeat 2 11 -61 878 196 70 15 chrX 2485939 2486138 -160113792 - MER6B DNA MER2_type 0 210 1 323 167 0 14 chrX 2486138 2486199 -160113731 + (TA)n Simple_repeat Simple_repeat 11 72 0 1732 135 8 8 chrX 2488545 2488812 -160111118 - AluSx SINE Alu -45 267 1 272 338 0 0 chrX 2489120 2489200 -160110730 + ERVL LTR ERVL 851 930 -4834 201 159 0 0 chrX 2489439 2489483 -160110447 + (TTG)n Simple_repeat Simple_repeat 2 45 0 308 343 76 46 chrX 2490334 2490728 -160109202 + ERVL LTR ERVL 1911 2316 -3338 842 191 6 6 chrX 2490770 2490938 -160108992 + MLT1B LTR MaLR 13 180 -210 1358 171 0 42 chrX 2490939 2491225 -160108705 + L1MA9 LINE L1 6008 6281 -31 1253 148 6 9 chrX 2491247 2491473 -160108457 + MLT1B LTR MaLR 167 396 0 1401 115 46 0 chrX 2491473 2491690 -160108240 + MLT1B LTR MaLR 158 384 -6 225 175 0 0 chrX 2491949 2491989 -160107941 - MLT1B LTR MaLR -183 207 168 420 202 35 1 chrX 2492004 2492118 -160107812 - L1MA9 LINE L1 -8 6292 6180 814 178 27 7 chrX 2492162 2492308 -160107622 + AluJb SINE Alu 134 282 -30 381 58 0 0 chrX 2492311 2492363 -160107567 + (TC)n Simple_repeat Simple_repeat 1 52 0 384 111 0 0 chrX 2492363 2492426 -160107504 + (TA)n Simple_repeat Simple_repeat 2 64 0 359 296 59 35 chrX 2492432 2492635 -160107295 + ERVL LTR ERVL 2725 2932 -2722 1425 294 42 8 chrX 2492647 2493031 -160106899 + MER70B LTR ERVL 4 400 -178 342 327 18 9 chrX 2495631 2495741 -160104189 + MER115 DNA AcHobo 158 268 -425 458 288 117 30 chrX 2496095 2496394 -160103536 + MER115 DNA AcHobo 352 676 -17 877 72 0 40 chrX 2496851 2496976 -160102954 - L1M1 LINE L1 -524 5778 5659 2814 90 26 9 chrX 2496976 2497397 -160102533 + L1MA1 LINE L1 5873 6301 -1 21 0 0 0 chrX 2497588 2497609 -160102321 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2498147 2498168 -160101762 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 2498753 2498794 -160101136 + AT_rich Low_complexity Low_complexity 1 41 0 3743 164 47 12 chrX 2499321 2500021 -160099909 + L1MA4 LINE L1 5505 6236 -64 1800 141 61 30 chrX 2500021 2500384 -160099546 - THE1C LTR MaLR -1 374 1 3743 164 47 12 chrX 2500384 2500447 -160099483 + L1MA4 LINE L1 6236 6295 -5 233 159 0 45 chrX 2500893 2500937 -160098993 - L2 LINE L2 0 3313 3272 222 37 0 0 chrX 2500949 2500976 -160098954 + (TC)n Simple_repeat Simple_repeat 2 28 0 1311 167 25 0 chrX 2501359 2501599 -160098331 - L1MA4 LINE L1 -461 5839 5594 274 294 113 78 chrX 2502044 2502442 -160097488 - MLT1J LTR MaLR -6 505 94 236 164 0 36 chrX 2502686 2502741 -160097189 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 202 292 10 73 chrX 2503349 2503445 -160096485 - L2 LINE L2 -1 3271 3182 331 244 27 0 chrX 2503497 2503589 -160096341 - FLAM SINE Alu -6 127 53 511 125 45 28 chrX 2503621 2503797 -160096133 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 509 76 57 25 chrX 2503852 2504009 -160095921 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 753 87 23 29 chrX 2504025 2504198 -160095732 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 215 325 24 0 chrX 2504509 2504592 -160095338 + GA-rich Low_complexity Low_complexity 6 90 0 279 303 67 0 chrX 2504702 2504791 -160095139 - MIR SINE MIR -111 151 57 1538 201 38 3 chrX 2505142 2505435 -160094495 - AluJo SINE Alu -9 303 1 22 0 0 0 chrX 2505437 2505459 -160094471 + AT_rich Low_complexity Low_complexity 1 22 0 337 273 66 62 chrX 2505822 2506049 -160093881 - L2 LINE L2 0 3313 3086 1106 65 28 0 chrX 2506538 2506754 -160093176 + (TAGA)n Simple_repeat Simple_repeat 1 222 0 682 99 60 12 chrX 2506790 2507198 -160092732 + (TAGA)n Simple_repeat Simple_repeat 1 427 0 733 127 39 8 chrX 2507247 2507511 -160092419 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 369 0 0 0 chrX 2507838 2507879 -160092051 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 196 18 0 chrX 2507891 2507947 -160091983 + (TA)n Simple_repeat Simple_repeat 2 58 0 2237 157 23 45 chrX 2507960 2508401 -160091529 - Tigger2a DNA MER2_type 0 434 4 213 94 0 0 chrX 2508401 2508433 -160091497 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 366 281 75 75 chrX 2509366 2509633 -160090297 + MLT1L LTR MaLR 1 267 -348 571 210 17 0 chrX 2510206 2510325 -160089605 - MLT1B LTR MaLR -264 126 6 297 68 0 0 chrX 2510325 2510369 -160089561 + (CA)n Simple_repeat Simple_repeat 2 45 0 1907 123 39 75 chrX 2511129 2511518 -160088412 - THE1C LTR MaLR 0 375 1 1756 242 43 2 chrX 2511699 2512120 -160087810 + MLT1C LTR MaLR 1 438 -29 222 208 0 0 chrX 2512861 2512909 -160087021 + (TG)n Simple_repeat Simple_repeat 1 48 0 206 121 0 0 chrX 2513524 2513557 -160086373 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chrX 2513825 2513854 -160086076 + (TG)n Simple_repeat Simple_repeat 1 29 0 1904 173 34 3 chrX 2514106 2514459 -160085471 - MLT1A1 LTR MaLR -1 364 1 350 278 68 25 chrX 2514540 2514702 -160085228 + MLT1G LTR MaLR 5 173 -376 1220 228 80 46 chrX 2514714 2515152 -160084778 + MLT1C LTR MaLR 15 467 0 1124 254 85 27 chrX 2515152 2515551 -160084379 + MLT1G LTR MaLR 166 549 0 292 125 21 0 chrX 2516415 2516463 -160083467 - MER3 DNA MER1_type -6 203 155 1740 136 75 59 chrX 2516486 2516813 -160083117 + L1MB3 LINE L1 5542 5822 -361 1909 184 0 0 chrX 2516813 2517123 -160082807 + AluJo SINE Alu 3 312 0 1740 136 75 59 chrX 2517123 2517176 -160082754 + L1MB3 LINE L1 5822 5873 -310 1909 184 18 3 chrX 2517178 2517515 -160082415 + MER7A DNA MER2_type 7 346 0 1304 132 0 5 chrX 2517515 2517720 -160082210 + L1MB3 LINE L1 5905 6108 -75 2636 140 28 28 chrX 2517722 2518160 -160081770 + L1PB4 LINE L1 5686 6126 -30 2054 110 86 6 chrX 2518160 2518497 -160081433 + THE1B LTR MaLR 1 364 0 2636 140 28 28 chrX 2518497 2518522 -160081408 + L1PB4 LINE L1 6125 6149 -7 239 348 43 14 chrX 2518570 2518708 -160081222 - MER3 DNA MER1_type -62 147 6 1969 153 0 0 chrX 2519255 2519570 -160080360 + AluSx SINE Alu 1 315 0 277 198 26 99 chrX 2520005 2520930 -160079000 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 386 217 49 14 chrX 2520063 2520131 -160079799 + (TA)n Simple_repeat Simple_repeat 2 66 -83 2255 166 14 40 chrX 2520131 2520198 -160079732 - Tigger2a DNA MER2_type -2274 434 367 2063 128 3 0 chrX 2520198 2520487 -160079443 - AluSx SINE Alu -22 290 1 2255 166 14 40 chrX 2520487 2520865 -160079065 - Tigger2a DNA MER2_type -2341 367 1 386 217 49 14 chrX 2520865 2520939 -160078991 + (TA)n Simple_repeat Simple_repeat 66 149 0 183 281 320 8 chrX 2521177 2521305 -160078625 + MER5A DNA MER1_type 9 176 -13 922 146 18 0 chrX 2522397 2522629 -160077301 + GA-rich Low_complexity Low_complexity 1 236 0 1137 115 75 0 chrX 2523287 2523487 -160076443 - L1MA5A LINE L1 -10 6287 6073 2839 95 48 83 chrX 2523487 2523983 -160075947 - MER1A DNA MER1_type -2 527 49 462 111 0 0 chrX 2523986 2524058 -160075872 - L1MA5A LINE L1 -213 6084 6013 1031 189 0 0 chrX 2524360 2524524 -160075406 - AluJb SINE Alu -13 299 136 4192 91 22 11 chrX 2524867 2525497 -160074433 + L1PB2 LINE L1 5515 6151 0 25 31 0 0 chrX 2525732 2525764 -160074166 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chrX 2525885 2525907 -160074023 + AT_rich Low_complexity Low_complexity 1 22 0 2449 82 0 3 chrX 2526217 2526520 -160073410 - AluSq SINE Alu -11 302 1 1295 127 81 163 chrX 2527750 2528247 -160071683 - LTR1 LTR ERV1 -329 456 1 406 235 52 15 chrX 2528305 2528441 -160071489 + (CTATG)n Simple_repeat Simple_repeat 3 143 0 396 194 28 33 chrX 2528441 2528621 -160071309 + (TTATG)n Simple_repeat Simple_repeat 1 179 0 1504 129 0 18 chrX 2529362 2529586 -160070344 + AluJo SINE Alu 1 220 -92 1052 174 58 45 chrX 2529586 2529810 -160070120 + AluJb SINE Alu 86 312 0 36 70 0 0 chrX 2531378 2531449 -160068481 + AT_rich Low_complexity Low_complexity 1 71 0 24 0 0 0 chrX 2531528 2531552 -160068378 + AT_rich Low_complexity Low_complexity 1 24 0 213 154 0 0 chrX 2531641 2531680 -160068250 + CT-rich Low_complexity Low_complexity 2 40 0 1392 182 31 35 chrX 2531698 2531956 -160067974 - AluJo SINE Alu -31 281 25 365 290 113 20 chrX 2532394 2532694 -160067236 - L1M4 LINE L1 -2130 4016 3689 22 0 0 0 chrX 2532723 2532745 -160067185 + AT_rich Low_complexity Low_complexity 1 22 0 1383 146 4 0 chrX 2532983 2533216 -160066714 + MLT1B LTR MaLR 31 264 -126 818 161 0 83 chrX 2533219 2533411 -160066519 - MLT1C LTR MaLR -291 176 1 288 53 0 0 chrX 2535209 2535247 -160064683 + (TG)n Simple_repeat Simple_repeat 2 39 0 1874 144 32 0 chrX 2535520 2535859 -160064071 - L1MA5 LINE L1 -5 6295 5946 2320 145 2 28 chrX 2535991 2536391 -160063539 + MLT1B LTR MaLR 1 390 0 319 166 36 50 chrX 2537176 2537371 -160062559 + (TA)n Simple_repeat Simple_repeat 1 192 0 180 111 0 0 chrX 2537377 2537404 -160062526 + (TG)n Simple_repeat Simple_repeat 2 28 0 215 91 91 42 chrX 2537479 2537644 -160062286 + (TA)n Simple_repeat Simple_repeat 1 173 0 189 107 0 0 chrX 2537670 2537698 -160062232 + (CA)n Simple_repeat Simple_repeat 1 28 0 372 224 0 0 chrX 2537701 2537768 -160062162 + MER6 DNA MER2_type -65 1 -143 868 123 6 37 chrX 2537794 2537957 -160061973 + AluSq SINE Alu 1 158 -155 189 74 0 0 chrX 2538538 2538565 -160061365 + (TG)n Simple_repeat Simple_repeat 2 28 0 1594 155 10 37 chrX 2538924 2539221 -160060709 + AluJo SINE Alu 6 294 -18 1823 290 76 32 chrX 2539675 2541071 -160058859 - L1MC/D LINE L1 -572 5575 4162 333 189 37 37 chrX 2541092 2541387 -160058543 + (TCTA)n Simple_repeat Simple_repeat 1 295 0 1681 271 69 66 chrX 2541402 2542574 -160057356 - L1MC/D LINE L1 -2010 4119 2944 1757 149 7 20 chrX 2542578 2542879 -160057051 + MER61A LTR ERV1 47 343 0 579 277 20 66 chrX 2542895 2543245 -160056685 - L1MC/D LINE L1 -3474 2655 2322 659 136 8 76 chrX 2543246 2543378 -160056552 - MER31A LTR ERV1 -361 124 2 3501 118 6 2 chrX 2543437 2543956 -160055974 + L1MA3 LINE L1 5374 5894 -411 315 0 0 0 chrX 2544269 2544304 -160055626 + (TG)n Simple_repeat Simple_repeat 2 36 0 258 323 21 0 chrX 2544633 2544729 -160055201 - L1ME LINE L1 -532 5589 5492 239 161 18 0 chrX 2544887 2544943 -160054987 + (CA)n Simple_repeat Simple_repeat 2 58 0 260 345 0 0 chrX 2544985 2545127 -160054803 + T-rich Low_complexity Low_complexity 1 142 0 286 80 40 0 chrX 2545474 2545524 -160054406 + (TA)n Simple_repeat Simple_repeat 1 52 0 2313 129 35 7 chrX 2545615 2546018 -160053912 - L1MA5A LINE L1 -10 6287 5874 319 336 35 9 chrX 2546020 2546136 -160053794 - L1MC/D LINE L1 -4892 1227 1109 911 168 19 0 chrX 2546284 2546445 -160053485 + FRAM SINE Alu 5 168 -8 1510 172 86 0 chrX 2546451 2546742 -160053188 - Tigger3(Golem) DNA MER2_type -2713 316 1 2306 119 0 0 chrX 2546751 2547063 -160052867 - AluSx SINE Alu 0 312 1 269 265 10 49 chrX 2547275 2547377 -160052553 + MIR SINE MIR 94 191 -71 262 273 39 0 chrX 2547666 2547743 -160052187 - MER20 DNA MER1_type -1 218 139 308 152 0 0 chrX 2547745 2547791 -160052139 + MSTA LTR MaLR 1 46 -382 429 290 39 78 chrX 2547903 2548262 -160051668 + L1M4 LINE L1 2789 3133 -3013 1528 62 4 74 chrX 2548443 2548687 -160051243 + Tigger3(Golem) DNA MER2_type 2202 2428 -601 755 173 0 15 chrX 2548691 2548824 -160051106 + AluJo/FLAM SINE Alu 1 131 -171 379 177 0 0 chrX 2548824 2548886 -160051044 + AluSq SINE Alu 134 195 -108 * 3643 132 35 5 chrX 2548881 2549479 -160050451 + Tigger3(Golem) DNA MER2_type 2414 3029 0 401 185 25 38 chrX 2549479 2549636 -160050294 + (TA)n Simple_repeat Simple_repeat 1 155 0 216 92 46 46 chrX 2549664 2549729 -160050201 + (TA)n Simple_repeat Simple_repeat 2 66 0 349 123 27 68 chrX 2549729 2549802 -160050128 - MER6 DNA MER2_type 0 865 796 210 145 0 116 chrX 2600992 2601061 -159998869 + (TCCCC)n Simple_repeat Simple_repeat 4 64 0 1828 114 0 8 chrX 2601137 2601392 -159998538 + AluSx SINE Alu 1 253 -59 396 194 28 33 chrX 2602023 2602203 -159997727 + (CATAA)n Simple_repeat Simple_repeat 1 179 0 406 235 52 15 chrX 2602203 2602339 -159997591 + (CATAG)n Simple_repeat Simple_repeat 3 143 0 3607 100 96 78 chrX 2602410 2603170 -159996760 + LTR1 LTR ERV1 12 785 0 305 204 0 45 chrX 2603195 2603352 -159996578 + (CATAG)n Simple_repeat Simple_repeat 1 150 0 270 168 21 42 chrX 2603375 2603470 -159996460 + (CATAG)n Simple_repeat Simple_repeat 2 94 0 592 166 11 44 chrX 2603474 2603655 -159996275 + (CATAA)n Simple_repeat Simple_repeat 5 179 0 365 235 23 45 chrX 2603659 2603791 -159996139 + (CATAG)n Simple_repeat Simple_repeat 4 132 0 361 288 117 30 chrX 2603961 2604260 -159995670 - MER115 DNA AcHobo -17 676 352 305 327 18 9 chrX 2604614 2604724 -159995206 - MER115 DNA AcHobo -425 268 158 491 103 75 46 chrX 2604947 2605121 -159994809 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 1688 160 10 70 chrX 2605583 2605896 -159994034 - AluJo SINE Alu -18 294 1 195 42 0 0 chrX 2606054 2606078 -159993852 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 607 155 0 39 chrX 2606310 2606439 -159993491 + L1MB5 LINE L1 5860 5983 -191 25 31 0 0 chrX 2606479 2606511 -159993419 + AT_rich Low_complexity Low_complexity 1 32 0 976 171 28 0 chrX 2606516 2606697 -159993233 + L1MB5 LINE L1 5980 6165 -9 769 136 36 7 chrX 2606857 2606997 -159992933 - L1PA16 LINE L1 -304 5862 5719 295 50 0 0 chrX 2606995 2607035 -159992895 + L1PA15 LINE L1 5827 5866 -299 * 913 133 7 0 chrX 2607179 2607330 -159992600 + L1PA15 LINE L1 5910 6061 -104 520 298 70 26 chrX 2607663 2608079 -159991851 + L1MC/D LINE L1 5284 5717 -2325 191 306 102 46 chrX 2608432 2608449 -159991481 - L2 LINE L2 -2 3311 3296 1606 171 55 47 chrX 2608449 2608811 -159991119 + MER47A DNA MER2_type 1 365 -1 191 306 102 46 chrX 2608811 2608901 -159991029 - L2 LINE L2 -17 3296 3198 1289 144 0 0 chrX 2608938 2609126 -159990804 - AluJb SINE Alu -4 308 121 1406 182 31 35 chrX 2609810 2610068 -159989862 + AluJo SINE Alu 25 281 -31 213 154 0 0 chrX 2610086 2610125 -159989805 + GA-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chrX 2610214 2610238 -159989692 + AT_rich Low_complexity Low_complexity 1 24 0 36 70 0 0 chrX 2610317 2610388 -159989542 + AT_rich Low_complexity Low_complexity 1 71 0 1085 174 58 45 chrX 2611956 2612180 -159987750 - AluJb SINE Alu 0 312 86 1517 129 0 18 chrX 2612180 2612404 -159987526 - AluJo SINE Alu -92 220 1 1186 148 6 9 chrX 2612678 2612904 -159987026 + MLT1B LTR MaLR 167 396 0 1326 115 46 0 chrX 2612904 2613121 -159986809 + MLT1B LTR MaLR 158 384 -6 396 188 42 0 chrX 2613436 2613532 -159986398 - L1MA9 LINE L1 -22 6290 6191 807 178 27 7 chrX 2613593 2613739 -159986191 + AluJb SINE Alu 134 282 -30 381 58 0 0 chrX 2613742 2613794 -159986136 + (TC)n Simple_repeat Simple_repeat 1 52 0 402 108 0 0 chrX 2613794 2613859 -159986071 + (TA)n Simple_repeat Simple_repeat 2 66 0 335 306 56 20 chrX 2613873 2614069 -159985861 + HERVL LTR ERVL 2730 2932 -2722 1297 294 42 8 chrX 2614081 2614465 -159985465 + MER70B LTR ERVL 4 400 -178 387 0 0 0 chrX 2617008 2617051 -159982879 + (TA)n Simple_repeat Simple_repeat 1 43 0 987 180 9 18 chrX 2617532 2617749 -159982181 + L1MB2 LINE L1 5949 6163 -8 2973 81 26 71 chrX 2618021 2618116 -159981814 + L1PB1 LINE L1 5679 5777 -374 351 0 0 0 chrX 2618116 2618155 -159981775 + (CA)n Simple_repeat Simple_repeat 2 40 0 2973 81 26 71 chrX 2618155 2618554 -159981376 + L1PB1 LINE L1 5777 6151 0 1543 193 21 17 chrX 2618723 2619013 -159980917 + AluJb SINE Alu 1 291 -21 1268 179 112 166 chrX 2620075 2620243 -159979687 - LTR8A LTR ERV1 0 727 551 3206 123 16 12 chrX 2620243 2620754 -159979176 + MER75 DNA T2_type 2 514 0 1268 179 112 166 chrX 2620754 2621354 -159978576 - LTR8A LTR ERV1 -176 551 1 3056 180 56 3 chrX 2621720 2622310 -159977620 + LTR26E LTR ERV1 2 622 0 1241 160 106 83 chrX 2622536 2622923 -159977007 - LTR8A LTR ERV1 0 727 332 323 183 28 14 chrX 2622925 2622996 -159976934 + MER84 LTR ERVI 3 74 -433 2700 142 76 6 chrX 2622996 2623469 -159976461 + MER84 LTR ERV1 2 507 0 1926 129 18 29 chrX 2623469 2623552 -159976378 - LTR8A LTR ERV1 -391 336 254 2806 81 3 16 chrX 2623552 2623921 -159976009 - THE1B LTR MaLR 0 364 1 1926 129 18 29 chrX 2623921 2624177 -159975753 - LTR8A LTR ERV1 -473 254 1 424 171 0 0 chrX 2624412 2624488 -159975442 + L1PA10 LINE L1 6092 6167 -1 2236 114 3 0 chrX 2624499 2624806 -159975124 + AluSx SINE Alu 3 310 -2 579 133 51 0 chrX 2625042 2625140 -159974790 - LTR8A LTR ERV1 -624 103 1 424 171 0 0 chrX 2625376 2625452 -159974478 + L1PA10 LINE L1 6092 6167 -1 2067 136 3 0 chrX 2625463 2625772 -159974158 + AluSx SINE Alu 3 312 0 476 272 71 48 chrX 2627365 2627633 -159972297 + L1M4 LINE L1 2136 2409 -3737 2106 114 28 0 chrX 2628671 2628960 -159970970 + AluSq SINE Alu 1 297 -16 692 286 82 68 chrX 2628972 2629126 -159970804 - MLT1G1 LTR MaLR -1 554 404 2851 186 14 80 chrX 2629126 2629863 -159970067 + LTR8 LTR ERV1 4 691 0 692 286 82 68 chrX 2629863 2630266 -159969664 - MLT1G1 LTR MaLR -151 404 16 24 53 0 0 chrX 2630585 2630623 -159969307 + AT_rich Low_complexity Low_complexity 1 38 0 301 279 82 71 chrX 2630632 2630699 -159969231 + L1M4 LINE L1 5106 5171 -975 2084 134 0 0 chrX 2630699 2630990 -159968940 + AluSx SINE Alu 7 297 -15 301 279 82 71 chrX 2630990 2631216 -159968714 + L1M4 LINE L1 5171 5402 -744 2345 136 155 0 chrX 2631277 2631754 -159968176 + L1MA8 LINE L1 5600 6150 -141 1626 173 52 4 chrX 2631754 2632047 -159967883 + AluJo SINE Alu 1 306 0 22 0 0 0 chrX 2632169 2632191 -159967739 + AT_rich Low_complexity Low_complexity 1 22 0 988 231 57 102 chrX 2632340 2632398 -159967532 - MLT1C LTR MaLR 0 467 408 1746 202 3 0 chrX 2632398 2632700 -159967230 - AluJb SINE Alu -9 303 1 988 231 57 102 chrX 2632700 2633130 -159966800 - MLT1C LTR MaLR -59 408 1 45 19 0 0 chrX 2633208 2633260 -159966670 + AT_rich Low_complexity Low_complexity 1 52 0 1755 177 0 4 chrX 2633275 2633552 -159966378 - AluJo SINE Alu -22 290 15 24 0 0 0 chrX 2633689 2633713 -159966217 + AT_rich Low_complexity Low_complexity 1 24 0 1322 241 17 17 chrX 2636028 2636385 -159963545 + MLT1C LTR MaLR 7 363 -104 401 232 0 10 chrX 2636610 2636709 -159963221 + MLT1C LTR MaLR 365 462 -5 284 127 18 0 chrX 2636931 2636986 -159962944 + (ATTG)n Simple_repeat Simple_repeat 1 56 0 742 30 0 10 chrX 2637364 2637463 -159962467 + L1MA4A LINE L1 6196 6293 -10 23 0 0 0 chrX 2637464 2637487 -159962443 + AT_rich Low_complexity Low_complexity 1 23 0 686 262 47 83 chrX 2637539 2637912 -159962018 + Zaphod DNA AcHobo 16 374 -3657 204 67 0 0 chrX 2637912 2637942 -159961988 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 686 262 47 83 chrX 2637942 2637977 -159961953 + Zaphod DNA AcHobo 374 409 -3622 2223 139 0 0 chrX 2638184 2638485 -159961445 + AluSx SINE Alu 1 301 -11 397 289 20 0 chrX 2638486 2638635 -159961295 + Zaphod DNA AcHobo 445 596 -3435 248 291 19 19 chrX 2638635 2638738 -159961192 + (TATG)n Simple_repeat Simple_repeat 1 103 0 24 0 0 0 chrX 2638882 2638906 -159961024 + AT_rich Low_complexity Low_complexity 1 24 0 248 194 0 65 chrX 2639077 2639139 -159960791 + MER58A DNA MER1_type 29 86 -21 243 0 0 0 chrX 2639139 2639166 -159960764 + (T)n Simple_repeat Simple_repeat 1 27 0 359 46 93 33 chrX 2639595 2639746 -159960184 + (TA)n Simple_repeat Simple_repeat 2 161 0 264 143 0 0 chrX 2639746 2639788 -159960142 - AluJ/FLAM SINE Alu -244 58 17 27 0 0 0 chrX 2639847 2639874 -159960056 + AT_rich Low_complexity Low_complexity 1 27 0 233 66 66 33 chrX 2639913 2639974 -159959956 + (TATAG)n Simple_repeat Simple_repeat 2 64 0 319 154 65 18 chrX 2639988 2640157 -159959773 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 292 161 0 43 chrX 2640258 2640351 -159959579 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 803 189 78 15 chrX 2641786 2641992 -159957938 + MER20 DNA MER1_type 1 219 0 879 229 57 0 chrX 2643685 2643895 -159956035 - MLT1A1 LTR MaLR 0 365 144 3640 160 70 89 chrX 2643912 2644094 -159955836 + MER21A LTR ERV1 5 189 -742 2015 159 3 0 chrX 2644094 2644402 -159955528 - AluJb SINE Alu -3 309 1 3640 160 70 89 chrX 2644402 2645138 -159954792 + MER21A LTR ERV1 189 905 -26 846 124 7 0 chrX 2645180 2645317 -159954613 - MLT1A1 LTR MaLR -227 138 1 308 136 0 0 chrX 2645573 2645632 -159954298 + L1PA15 LINE L1 6107 6165 0 2380 75 3 0 chrX 2645636 2645928 -159954002 + AluSp SINE Alu 1 293 -20 1312 228 80 13 chrX 2646119 2646492 -159953438 + MLT1C LTR MaLR 1 398 -69 41 48 0 0 chrX 2646503 2646565 -159953365 + AT_rich Low_complexity Low_complexity 1 62 0 30 69 0 0 chrX 2646666 2646724 -159953206 + AT_rich Low_complexity Low_complexity 1 58 0 73 52 0 0 chrX 2646771 2646886 -159953044 + AT_rich Low_complexity Low_complexity 1 115 0 73 76 0 0 chrX 2646954 2647111 -159952819 + AT_rich Low_complexity Low_complexity 1 157 0 217 195 46 11 chrX 2647152 2647239 -159952691 + (TTATA)n Simple_repeat Simple_repeat 3 92 0 207 150 20 88 chrX 2647319 2647466 -159952464 + (TTATA)n Simple_repeat Simple_repeat 1 137 0 55 89 0 0 chrX 2647494 2647640 -159952290 + AT_rich Low_complexity Low_complexity 1 146 0 279 169 0 17 chrX 2647690 2647749 -159952181 + MLT1B LTR MaLR 333 390 0 6795 184 149 23 chrX 2648685 2650244 -159949686 - MER52A LTR ERV1 0 1755 1 1845 144 42 23 chrX 2650288 2650642 -159949288 + MSTA LTR MaLR 1 361 -67 342 210 20 40 chrX 2650743 2650843 -159949087 + MLT1C LTR MaLR 368 465 -2 522 247 27 7 chrX 2650855 2651005 -159948925 + MER3 DNA MER1_type 52 204 -5 22 0 0 0 chrX 2652397 2652419 -159947511 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chrX 2652444 2652470 -159947460 + (T)n Simple_repeat Simple_repeat 1 26 0 3130 128 4 0 chrX 2653084 2653576 -159946354 + MER75 DNA T2_type 1 494 -20 2091 241 95 40 chrX 2653753 2654534 -159945396 - LTR1B LTR ERV1 0 826 3 740 248 13 9 chrX 2654552 2654782 -159945148 + MER33 DNA MER1_type 10 240 -84 576 233 16 0 chrX 2654787 2654916 -159945014 - MLT1C LTR MaLR -6 461 331 25 31 0 0 chrX 2655517 2655549 -159944381 + AT_rich Low_complexity Low_complexity 1 32 0 7622 22 7 0 chrX 2656149 2657508 -159942422 - L1PA4 LINE L1 -2 6153 4790 29 101 0 0 chrX 2657871 2657970 -159941960 + AT_rich Low_complexity Low_complexity 1 99 0 480 209 0 0 chrX 2657981 2658086 -159941844 + L1MB4 LINE L1 6066 6170 -10 885 207 15 0 chrX 2658093 2658291 -159941639 + L1MA7 LINE L1 6055 6255 -36 353 280 100 72 chrX 2659007 2659368 -159940562 + L2 LINE L2 833 1203 -2111 2805 145 21 53 chrX 2659743 2660273 -159939657 + L1PA16 LINE L1 5654 6166 0 1916 235 14 6 chrX 2662076 2662561 -159937369 - L1MB5 LINE L1 -68 6106 5618 526 244 103 0 chrX 2662852 2663008 -159936922 - L1MB5 LINE L1 -557 5623 5452 237 65 0 0 chrX 2663615 2663646 -159936284 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1569 157 35 35 chrX 2663651 2663799 -159936131 - AluJo SINE Alu -26 286 136 2312 105 0 0 chrX 2663799 2664105 -159935825 - AluSx SINE Alu -6 306 1 1569 157 35 35 chrX 2664105 2664242 -159935688 - AluJo SINE Alu -175 137 1 220 189 38 0 chrX 2664295 2664348 -159935582 + (TA)n Simple_repeat Simple_repeat 1 55 0 29 28 0 0 chrX 2664386 2664422 -159935508 + AT_rich Low_complexity Low_complexity 1 36 0 1761 203 11 34 chrX 2665227 2665283 -159934647 - MLT2B1 LTR ERVL 0 520 464 2467 178 45 0 chrX 2665283 2665745 -159934185 + L1PB4 LINE L1 5670 6152 -4 1761 203 11 34 chrX 2665745 2666170 -159933760 - MLT2B1 LTR ERVL -56 464 1 25 31 0 0 chrX 2666961 2666993 -159932937 + AT_rich Low_complexity Low_complexity 1 32 0 864 205 0 0 chrX 2667209 2667370 -159932560 - AluJb SINE Alu -15 297 137 441 299 40 70 chrX 2667546 2667917 -159932013 - L1M4 LINE L1 -2998 3148 2789 308 152 0 0 chrX 2668029 2668075 -159931855 - MSTA LTR MaLR -382 46 1 277 260 39 0 chrX 2668077 2668154 -159931776 + MER20 DNA MER1_type 139 218 -1 269 265 10 49 chrX 2668402 2668504 -159931426 - MIR SINE MIR -71 191 94 2306 119 0 0 chrX 2668716 2669028 -159930902 + AluSx SINE Alu 1 312 0 4938 110 29 89 chrX 2669037 2669334 -159930596 + Tigger3(Golem) DNA MER2_type 1 314 -2715 1894 166 0 13 chrX 2669334 2669642 -159930288 - AluJb SINE Alu -8 304 1 4938 110 29 89 chrX 2669642 2669977 -159929953 + Tigger3(Golem) DNA MER2_type 314 667 -2362 755 173 0 15 chrX 2669977 2670110 -159929820 + FLAM_C SINE Alu 1 131 -2 4938 110 29 89 chrX 2670110 2670766 -159929164 + Tigger3(Golem) DNA MER2_type 667 3029 0 401 185 25 38 chrX 2670766 2670923 -159929007 + (TA)n Simple_repeat Simple_repeat 1 155 0 216 92 46 46 chrX 2670951 2671016 -159928914 + (TA)n Simple_repeat Simple_repeat 1 65 0 322 114 0 0 chrX 2671016 2671060 -159928870 - MER6B DNA MER2_type 0 210 167 180 111 0 0 chrX 2671264 2671291 -159928639 + (CA)n Simple_repeat Simple_repeat 2 28 0 244 244 42 42 chrX 2671297 2671465 -159928465 + (TATATG)n Simple_repeat Simple_repeat 5 172 0 * 319 166 36 50 chrX 2671353 2671492 -159928438 + (TA)n Simple_repeat Simple_repeat 1 137 0 2320 145 2 28 chrX 2672277 2672677 -159927253 - MLT1B LTR MaLR 0 390 1 1874 144 32 0 chrX 2672809 2673148 -159926782 + L1MA5 LINE L1 5946 6295 -5 288 53 0 0 chrX 2673421 2673459 -159926471 + (CA)n Simple_repeat Simple_repeat 2 39 0 818 161 0 83 chrX 2675257 2675449 -159924481 + MLT1C LTR MaLR 1 176 -291 1383 146 4 0 chrX 2675452 2675685 -159924245 - MLT1B LTR MaLR -126 264 31 1046 165 0 54 chrX 2676024 2676248 -159923682 - L1MA9 LINE L1 -93 6219 6008 842 191 6 6 chrX 2676249 2676417 -159923513 - MLT1B LTR MaLR -210 180 13 326 343 76 46 chrX 2676459 2676853 -159923077 - HERV16 LTR ERVL -2793 2203 1905 201 159 0 0 chrX 2677704 2677748 -159922182 + (CAA)n Simple_repeat Simple_repeat 2 45 0 272 338 0 0 chrX 2677987 2678067 -159921863 - HERV16 LTR ERVL -4834 930 851 1732 135 8 8 chrX 2678375 2678642 -159921288 + AluSx SINE Alu 1 267 -45 323 167 0 14 chrX 2680988 2681049 -159918881 + (TA)n Simple_repeat Simple_repeat 1 62 -9 878 196 70 15 chrX 2681049 2681248 -159918682 + MER6B DNA MER2_type 1 210 0 323 167 0 14 chrX 2681248 2681258 -159918672 + (TA)n Simple_repeat Simple_repeat 62 71 0 241 194 69 28 chrX 2681380 2681452 -159918478 - L1MC4 LINE L1 -1339 6703 6629 251 384 53 30 chrX 2682440 2682573 -159917357 + L2 LINE L2 3129 3264 -8 389 200 29 122 chrX 2683164 2683369 -159916561 - MER53 DNA DNA -2 187 2 1594 170 4 4 chrX 2684789 2685054 -159914876 + AluJb SINE Alu 3 267 -45 345 331 139 14 chrX 2685159 2685582 -159914348 + L1MC4a LINE L1 4767 5242 -904 1342 258 100 67 chrX 2685682 2686705 -159913225 + L1MC4a LINE L1 5363 6419 -1389 546 217 35 7 chrX 2686706 2686849 -159913081 + L1MC4 LINE L1 7731 7877 -165 365 219 39 70 chrX 2686982 2687110 -159912820 + L1MC4 LINE L1 7911 8034 -8 3214 129 20 0 chrX 2687189 2687685 -159912245 + MER84 LTR ERV1 2 507 0 220 271 0 0 chrX 2688171 2688220 -159911710 + (TG)n Simple_repeat Simple_repeat 1 49 0 27 0 0 0 chrX 2688517 2688544 -159911386 + AT_rich Low_complexity Low_complexity 1 27 0 21 71 0 0 chrX 2688586 2688628 -159911302 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chrX 2688642 2688667 -159911263 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chrX 2689133 2689175 -159910755 + AT_rich Low_complexity Low_complexity 1 42 0 1883 173 127 2 chrX 2689480 2689890 -159910040 - MER65C LTR ERV1 0 461 1 3252 194 55 52 chrX 2690211 2690544 -159909386 - Charlie1a DNA MER1_type -1307 1454 1124 1616 143 0 109 chrX 2690544 2690894 -159909036 - AluJo SINE Alu 0 312 1 3252 194 55 52 chrX 2690894 2691548 -159908382 - Charlie1a DNA MER1_type -1637 1124 464 888 224 72 89 chrX 2691541 2691890 -159908040 - Charlie1a DNA MER1_type -1112 343 1 * 250 202 71 60 chrX 2692048 2692132 -159907798 - L2 LINE L2 -2 3311 3227 852 160 0 14 chrX 2693004 2693148 -159906782 + FRAM SINE Alu 25 166 -10 48 0 0 0 chrX 2694045 2694093 -159905837 + AT_rich Low_complexity Low_complexity 1 48 0 2236 101 11 46 chrX 2694093 2694460 -159905470 + MER4A LTR ERV1 3 356 -308 2026 118 3 43 chrX 2694498 2694821 -159905109 + MER4A LTR ERV1 355 664 0 822 189 12 37 chrX 2695293 2695457 -159904473 + MLT1A2 LTR MaLR 2 161 -213 676 82 70 3 chrX 2695510 2695833 -159904097 + CT-rich Low_complexity Low_complexity 1 344 0 366 139 39 8 chrX 2695845 2695974 -159903956 + CT-rich Low_complexity Low_complexity 2 134 0 909 68 0 0 chrX 2695975 2696093 -159903837 - AluY SINE Alu -14 297 180 26 0 0 0 chrX 2696223 2696249 -159903681 + AT_rich Low_complexity Low_complexity 1 26 0 403 121 0 0 chrX 2696249 2696307 -159903623 - LTR29 LTR ERV1 -66 556 499 222 287 11 0 chrX 2697082 2697169 -159902761 + (TA)n Simple_repeat Simple_repeat 1 88 0 1202 164 5 0 chrX 2698796 2698991 -159900939 - AluSg/x SINE Alu -9 300 105 483 253 53 95 chrX 2699043 2699423 -159900507 - LTR37B LTR ERV1 -100 368 5 520 148 17 38 chrX 2700175 2700344 -159899586 + AluJo SINE Alu 81 308 -4 50 90 0 0 chrX 2700354 2700488 -159899442 + AT_rich Low_complexity Low_complexity 1 134 0 416 256 67 3 chrX 2700756 2700882 -159899048 - MIR SINE MIR -43 165 32 1114 220 48 34 chrX 2703138 2703406 -159896524 - L1PA16 LINE L1 -16 6150 5879 2440 70 0 3 chrX 2703924 2704224 -159895706 + AluSc SINE Alu 1 299 -10 2472 126 86 14 chrX 2704425 2704846 -159895084 + L1PA16 LINE L1 5712 6162 -4 22 56 0 0 chrX 2705680 2705716 -159894214 + AT_rich Low_complexity Low_complexity 1 36 0 1267 277 60 23 chrX 2705893 2706410 -159893520 - L1ME1 LINE L1 -44 6191 5656 3530 122 19 13 chrX 2706411 2706936 -159892994 - MER1A DNA MER1_type -1 528 1 1047 231 46 8 chrX 2706936 2707388 -159892542 - L1ME1 LINE L1 -572 5663 5197 1318 220 15 61 chrX 2707421 2707893 -159892037 - L1ME1 LINE L1 -4041 2355 1906 625 106 30 8 chrX 2708344 2708476 -159891454 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 21 0 0 0 chrX 2708522 2708543 -159891387 + AT_rich Low_complexity Low_complexity 1 21 0 1837 117 0 25 chrX 2709282 2709564 -159890366 - MER4A LTR ERV1 0 664 390 2024 100 19 10 chrX 2711350 2711660 -159888270 - L1PB1 LINE L1 -115 6036 5724 225 0 0 0 chrX 2711673 2711700 -159888230 - MADE1 DNA Mariner -49 31 5 967 309 102 43 chrX 2711712 2712598 -159887332 - L2 LINE L2 -35 3278 2328 510 116 0 116 chrX 2712832 2712857 -159887073 + L1MA4 LINE L1 6028 6054 -246 1264 216 40 33 chrX 2712857 2713158 -159886772 + AluJo SINE Alu 1 303 -9 510 116 0 116 chrX 2713158 2713253 -159886677 + L1MA4 LINE L1 6054 6134 -166 1923 112 9 31 chrX 2714391 2714525 -159885405 + L1PB1 LINE L1 5478 5613 -538 1930 168 19 67 chrX 2714525 2715001 -159884929 - MLT2A2 LTR ERVL 0 453 1 1923 112 9 31 chrX 2715001 2715188 -159884742 + L1PB1 LINE L1 5613 5792 -359 276 149 0 0 chrX 2715188 2715235 -159884695 + (CA)n Simple_repeat Simple_repeat 2 48 0 418 100 0 0 chrX 2715235 2715295 -159884635 + L1PB1 LINE L1 5782 5841 -310 2482 117 5 0 chrX 2715299 2715667 -159884263 + L1PB1 LINE L1 5782 6151 0 281 250 11 45 chrX 2716023 2716111 -159883819 + MLT1I LTR MaLR 316 400 -9 255 370 84 30 chrX 2716173 2716541 -159883389 - L2 LINE L2 -2230 1084 697 937 323 105 45 chrX 2716546 2716665 -159883265 - L2 LINE L2 -2487 827 717 362 287 115 19 chrX 2716665 2716822 -159883108 + MER5B DNA MER1_type 3 174 -4 937 323 105 45 chrX 2716822 2717302 -159882628 - L2 LINE L2 -2597 717 192 2163 122 0 0 chrX 2718009 2718303 -159881627 - AluSq SINE Alu -17 296 3 22 56 0 0 chrX 2718976 2719012 -159880918 + AT_rich Low_complexity Low_complexity 1 36 0 346 154 33 0 chrX 2720324 2720415 -159879515 + (TAGG)n Simple_repeat Simple_repeat 1 94 0 479 208 11 22 chrX 2720477 2720655 -159879275 + (TAGG)n Simple_repeat Simple_repeat 3 178 0 188 203 27 0 chrX 2720667 2720741 -159879189 + (TAGG)n Simple_repeat Simple_repeat 4 79 0 609 171 17 17 chrX 2720787 2720962 -159878968 + (TAGG)n Simple_repeat Simple_repeat 4 178 0 361 231 12 6 chrX 2721001 2721174 -159878756 + (TAGG)n Simple_repeat Simple_repeat 1 174 0 255 248 0 0 chrX 2721202 2721307 -159878623 + (TAGG)n Simple_repeat Simple_repeat 2 106 0 378 235 12 18 chrX 2721401 2721567 -159878363 + (TAGG)n Simple_repeat Simple_repeat 2 166 0 383 253 21 11 chrX 2721832 2721927 -159878003 + MER81 DNA DNA 18 113 -1 565 192 50 8 chrX 2722386 2722506 -159877424 - L1PB3 LINE L1 -93 6061 5937 2126 126 86 8 chrX 2722804 2723176 -159876754 - MER57A LTR ERV1 0 403 3 645 155 0 0 chrX 2724710 2724813 -159875117 + FLAM_A SINE Alu 30 132 -10 237 289 0 0 chrX 2725213 2725265 -159874665 + L2 LINE L2 3214 3265 -7 22 0 0 0 chrX 2726336 2726358 -159873572 + AT_rich Low_complexity Low_complexity 1 22 0 6065 107 11 21 chrX 2726358 2727299 -159872631 - L1MA3 LINE L1 -1 6304 5374 659 136 8 76 chrX 2727358 2727490 -159872440 + MER31A LTR ERV1 2 124 -361 579 277 20 66 chrX 2727491 2727841 -159872089 + L1MC/D LINE L1 2339 2672 -3474 1757 149 7 20 chrX 2727857 2728158 -159871772 - MER61A LTR ERV1 0 343 47 1681 271 69 66 chrX 2728162 2729334 -159870596 + L1MC/D LINE L1 2961 4136 -2010 333 189 37 37 chrX 2729349 2729644 -159870286 + (TAGA)n Simple_repeat Simple_repeat 1 295 0 1823 290 76 32 chrX 2729665 2731061 -159868869 + L1MC/D LINE L1 4179 5644 -572 1594 155 10 37 chrX 2731515 2731812 -159868118 - AluJo SINE Alu -18 294 6 189 74 0 0 chrX 2732171 2732198 -159867732 + (CA)n Simple_repeat Simple_repeat 2 28 0 877 72 0 40 chrX 2732619 2732744 -159867186 - L1M1 LINE L1 -524 5778 5659 2814 90 26 9 chrX 2732744 2733165 -159866765 + L1MA1 LINE L1 5873 6301 -1 21 0 0 0 chrX 2733356 2733377 -159866553 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2733915 2733936 -159865994 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 2734521 2734562 -159865368 + AT_rich Low_complexity Low_complexity 1 41 0 3743 164 47 12 chrX 2735089 2735789 -159864141 + L1MA4 LINE L1 5505 6236 -64 1800 141 61 30 chrX 2735789 2736152 -159863778 - THE1C LTR MaLR -1 374 1 3743 164 47 12 chrX 2736152 2736215 -159863715 + L1MA4 LINE L1 6236 6295 -5 233 159 0 45 chrX 2736661 2736705 -159863225 - L2 LINE L2 0 3313 3272 222 37 0 0 chrX 2736717 2736744 -159863186 + (TC)n Simple_repeat Simple_repeat 2 28 0 1311 167 25 0 chrX 2737127 2737367 -159862563 - L1MA4 LINE L1 -461 5839 5594 353 313 107 58 chrX 2737812 2738205 -159861725 - MLT1J LTR MaLR -6 505 94 236 164 0 36 chrX 2738448 2738503 -159861427 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 202 292 10 73 chrX 2739111 2739207 -159860723 - L2 LINE L2 -1 3271 3182 331 244 27 0 chrX 2739259 2739351 -159860579 - FLAM SINE Alu -6 127 53 511 125 45 28 chrX 2739383 2739559 -159860371 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 509 76 57 25 chrX 2739614 2739771 -159860159 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 753 87 23 29 chrX 2739787 2739960 -159859970 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 215 325 24 0 chrX 2740271 2740354 -159859576 + GA-rich Low_complexity Low_complexity 6 90 0 279 303 67 0 chrX 2740464 2740553 -159859377 - MIR SINE MIR -111 151 57 1538 201 38 3 chrX 2740904 2741197 -159858733 - AluJo SINE Alu -9 303 1 22 0 0 0 chrX 2741199 2741221 -159858709 + AT_rich Low_complexity Low_complexity 1 22 0 337 273 66 62 chrX 2741584 2741811 -159858119 - L2 LINE L2 0 3313 3086 1105 54 15 25 chrX 2742300 2742508 -159857422 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 682 99 60 12 chrX 2742548 2742956 -159856974 + (TAGA)n Simple_repeat Simple_repeat 1 427 0 733 127 39 8 chrX 2743005 2743269 -159856661 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 369 0 0 0 chrX 2743596 2743637 -159856293 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 196 18 0 chrX 2743649 2743705 -159856225 + (TA)n Simple_repeat Simple_repeat 2 58 0 2267 157 23 43 chrX 2743718 2744158 -159855772 - Tigger2a DNA MER2_type 0 434 4 213 94 0 0 chrX 2744158 2744190 -159855740 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 366 281 75 75 chrX 2745123 2745390 -159854540 + MLT1L LTR MaLR 1 267 -348 571 210 17 0 chrX 2745963 2746082 -159853848 - MLT1B LTR MaLR -264 126 6 297 68 0 0 chrX 2746082 2746126 -159853804 + (CA)n Simple_repeat Simple_repeat 2 45 0 1907 123 39 75 chrX 2746886 2747275 -159852655 - THE1C LTR MaLR 0 375 1 1756 242 43 2 chrX 2747456 2747877 -159852053 + MLT1C LTR MaLR 1 438 -29 222 208 0 0 chrX 2748618 2748666 -159851264 + (TG)n Simple_repeat Simple_repeat 1 48 0 206 121 0 0 chrX 2749281 2749314 -159850616 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chrX 2749582 2749611 -159850319 + (TG)n Simple_repeat Simple_repeat 1 29 0 1904 173 34 3 chrX 2749863 2750216 -159849714 - MLT1A1 LTR MaLR -1 364 1 350 278 68 25 chrX 2750297 2750459 -159849471 + MLT1G LTR MaLR 5 173 -376 1220 228 80 46 chrX 2750471 2750909 -159849021 + MLT1C LTR MaLR 15 467 0 1143 253 85 27 chrX 2750909 2751308 -159848622 + MLT1G LTR MaLR 166 549 0 292 125 21 0 chrX 2752172 2752220 -159847710 - MER3 DNA MER1_type -6 203 155 1740 136 75 59 chrX 2752243 2752570 -159847360 + L1MB3 LINE L1 5542 5822 -361 1909 184 0 0 chrX 2752570 2752880 -159847050 + AluJo SINE Alu 3 312 0 1740 136 75 59 chrX 2752880 2752933 -159846997 + L1MB3 LINE L1 5822 5873 -310 1909 184 18 3 chrX 2752935 2753272 -159846658 + MER7A DNA MER2_type 7 346 0 1304 132 0 5 chrX 2753272 2753477 -159846453 + L1MB3 LINE L1 5905 6108 -75 1466 93 49 26 chrX 2753479 2753705 -159846225 + L1PB4 LINE L1 5686 5916 -240 1766 117 89 7 chrX 2753809 2754100 -159845830 + THE1B LTR MaLR 50 364 0 239 348 43 14 chrX 2754173 2754311 -159845619 - MER3 DNA MER1_type -62 147 6 1954 157 0 0 chrX 2754858 2755173 -159844757 + AluSx SINE Alu 1 315 0 277 198 26 99 chrX 2755607 2756532 -159843398 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 386 217 49 14 chrX 2755665 2755733 -159844197 + (TA)n Simple_repeat Simple_repeat 2 66 -83 2255 166 14 40 chrX 2755733 2755800 -159844130 - Tigger2a DNA MER2_type -2274 434 367 2063 128 3 0 chrX 2755800 2756089 -159843841 - AluSx SINE Alu -22 290 1 2255 166 14 40 chrX 2756089 2756467 -159843463 - Tigger2a DNA MER2_type -2341 367 1 386 217 49 14 chrX 2756467 2756541 -159843389 + (TA)n Simple_repeat Simple_repeat 66 149 0 183 281 320 8 chrX 2756779 2756907 -159843023 + MER5A DNA MER1_type 9 176 -13 922 146 18 0 chrX 2757999 2758231 -159841699 + GA-rich Low_complexity Low_complexity 1 236 0 1137 115 75 0 chrX 2758889 2759089 -159840841 - L1MA5A LINE L1 -10 6287 6073 2839 95 48 83 chrX 2759089 2759585 -159840345 - MER1A DNA MER1_type -2 527 49 462 111 0 0 chrX 2759588 2759660 -159840270 - L1MA5A LINE L1 -213 6084 6013 1031 189 0 0 chrX 2759962 2760126 -159839804 - AluJb SINE Alu -13 299 136 4192 91 22 11 chrX 2760469 2761099 -159838831 + L1PB2 LINE L1 5515 6151 0 22 0 0 0 chrX 2761511 2761533 -159838397 + AT_rich Low_complexity Low_complexity 1 22 0 2449 82 0 3 chrX 2761843 2762146 -159837784 - AluSq SINE Alu -11 302 1 315 0 0 0 chrX 2762742 2762777 -159837153 + (TG)n Simple_repeat Simple_repeat 2 36 0 258 326 119 0 chrX 2762990 2763202 -159836728 - L1MC/D LINE L1 -532 5589 5492 239 161 18 0 chrX 2763360 2763416 -159836514 + (CA)n Simple_repeat Simple_repeat 2 58 0 260 345 0 0 chrX 2763458 2763600 -159836330 + T-rich Low_complexity Low_complexity 1 142 0 286 80 40 0 chrX 2763947 2763997 -159835933 + (TA)n Simple_repeat Simple_repeat 1 52 0 2313 129 35 7 chrX 2764088 2764491 -159835439 - L1MA5A LINE L1 -10 6287 5874 301 323 33 43 chrX 2764511 2764814 -159835116 - L1MEd LINE L1 -4910 1209 910 1943 109 0 0 chrX 2764889 2765185 -159834745 - AluSx SINE Alu 0 326 31 380 241 13 0 chrX 2765365 2765444 -159834486 + MER93a LTR ERV1 1 80 -322 1130 241 16 12 chrX 2765542 2765787 -159834143 + MER93a LTR ERV1 91 336 -66 482 170 0 40 chrX 2815864 2815964 -159783966 - AluJ/FLAM SINE Alu -214 98 3 598 219 26 0 chrX 2815987 2816138 -159783792 + L1MB7 LINE L1 6009 6163 -21 1997 142 0 0 chrX 2816195 2816512 -159783418 + L1PB4 LINE L1 5839 6155 -1 1792 229 53 25 chrX 2816774 2817284 -159782646 + MER68 LTR ERV1 28 551 -11 810 159 0 0 chrX 2817500 2817626 -159782304 + FLAM_C SINE Alu 1 126 -17 1683 197 0 25 chrX 2817636 2817956 -159781974 + AluJo SINE Alu 1 312 0 2845 161 10 2 chrX 2818555 2819065 -159780865 + L1PB4 LINE L1 5634 6147 -9 2218 132 0 39 chrX 2819244 2819585 -159780345 + L1PA13 LINE L1 5791 6117 -46 2037 159 24 11 chrX 2819585 2819955 -159779975 - THE1C LTR MaLR 0 375 1 2218 132 0 39 chrX 2819955 2819999 -159779931 + L1PA13 LINE L1 6117 6161 -2 2179 125 22 5 chrX 2819999 2820346 -159779584 + L1MA5A LINE L1 5925 6297 0 225 289 26 61 chrX 2820642 2820756 -159779174 - MER68 LTR ERV1 -75 487 378 518 240 0 0 chrX 2820795 2820916 -159779014 - MER68 LTR ERV1 -273 289 169 3775 183 19 3 chrX 2822170 2822919 -159777011 - L1PB4 LINE L1 -4 6152 5392 255 197 26 40 chrX 2823016 2823092 -159776838 + L1MB7 LINE L1 5472 5546 -628 2553 198 12 54 chrX 2823110 2823791 -159776139 + L1MB7 LINE L1 5520 6171 -13 1849 204 60 20 chrX 2824664 2825124 -159774806 - MLT2B1 LTR ERVL -20 472 12 319 77 19 19 chrX 2825190 2825242 -159774688 - L1PA16 LINE L1 -14 6152 6101 1095 233 12 6 chrX 2825342 2825664 -159774266 + L1 LINE L1 4285 4608 -1538 2179 159 14 23 chrX 2826693 2827120 -159772810 + LTR23 LTR ERV1 15 437 0 261 57 0 0 chrX 2827164 2827199 -159772731 + (CA)n Simple_repeat Simple_repeat 2 36 0 2194 130 0 0 chrX 2827395 2827696 -159772234 + AluSx SINE Alu 1 301 -11 430 267 32 12 chrX 2828013 2828210 -159771720 + MER93a LTR ERV1 198 398 -5 460 186 23 0 chrX 2829322 2829408 -159770522 + AluJb SINE Alu 44 131 -181 2057 104 43 0 chrX 2829413 2829693 -159770237 + AluSx SINE Alu 1 292 -20 30 59 0 0 chrX 2829695 2829746 -159770184 + AT_rich Low_complexity Low_complexity 1 51 0 519 205 0 0 chrX 2829762 2829889 -159770041 - L1MA8 LINE L1 -22 6269 6143 1990 148 127 16 chrX 2830248 2830633 -159769297 - MSTA LTR MaLR 0 428 1 998 164 28 9 chrX 2830785 2830998 -159768932 + L1MB7 LINE L1 5954 6170 -14 21 0 0 0 chrX 2831092 2831113 -159768817 + AT_rich Low_complexity Low_complexity 1 21 0 2568 67 0 3 chrX 2831324 2831636 -159768294 + AluY SINE Alu 1 311 0 221 167 19 0 chrX 2832064 2832118 -159767812 + CT-rich Low_complexity Low_complexity 2 56 0 1502 176 11 4 chrX 2832248 2832521 -159767409 + AluJo SINE Alu 1 275 -37 236 308 26 51 chrX 2832541 2832619 -159767311 - MIR3 SINE MIR -31 177 102 180 77 0 0 chrX 2833291 2833317 -159766613 + (T)n Simple_repeat Simple_repeat 1 26 0 3549 94 0 0 chrX 2833335 2833834 -159766096 - L1PA15 LINE L1 -82 6083 5585 1681 100 19 8 chrX 2833996 2834255 -159765675 - MER41D LTR ERV1 -295 262 1 2156 239 11 0 chrX 2834369 2834846 -159765084 - MER68 LTR ERV1 -4 558 77 994 223 29 71 chrX 2834855 2835237 -159764693 + MLT1A2 LTR MaLR 9 374 0 347 231 0 39 chrX 2835237 2835319 -159764611 - MER68 LTR ERV1 -484 78 1 595 218 6 46 chrX 2835388 2835494 -159764436 - LTR34 LTR ERV1 -4 695 597 3692 107 26 35 chrX 2835494 2836099 -159763831 - MER4A LTR ERV1 0 600 1 595 218 6 46 chrX 2836099 2836166 -159763764 - LTR34 LTR ERV1 -102 597 529 866 127 76 13 chrX 2836168 2836325 -159763605 - LTR34 LTR ERV1 -328 371 205 204 40 0 0 chrX 2837877 2837902 -159762028 + (CA)n Simple_repeat Simple_repeat 2 26 0 280 211 30 8 chrX 2837934 2838067 -159761863 + (TA)n Simple_repeat Simple_repeat 1 136 0 36 53 0 0 chrX 2838074 2838131 -159761799 + AT_rich Low_complexity Low_complexity 1 57 0 2386 161 57 0 chrX 2838658 2839094 -159760836 + LOR1b LTR ERV1 1 461 0 416 183 11 0 chrX 2840726 2840819 -159759111 + GA-rich Low_complexity Low_complexity 3 96 0 270 0 0 0 chrX 2841910 2841940 -159757990 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2501 137 16 56 chrX 2842364 2842810 -159757120 - MSTA LTR MaLR 0 428 1 1374 107 11 10 chrX 2843353 2843607 -159756323 - Tigger2 DNA MER2_type -171 2547 3 3410 142 7 12 chrX 2843827 2844426 -159755504 - L1PB4 LINE L1 -3 6153 5558 2559 102 23 0 chrX 2844432 2844786 -159755144 + THE1B LTR MaLR 1 362 -2 3589 115 11 15 chrX 2845719 2846248 -159753682 + MER1A DNA MER1_type 1 527 0 366 287 0 0 chrX 2846630 2846731 -159753199 + MER5A DNA MER1_type 9 109 -80 180 0 0 0 chrX 2847596 2847616 -159752314 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2171 98 30 3 chrX 2847801 2848097 -159751833 + AluSx SINE Alu 1 304 -8 1522 224 6 3 chrX 2848303 2848651 -159751279 + L1PA16 LINE L1 5796 6144 -22 1844 158 10 7 chrX 2849599 2849890 -159750040 + AluJo SINE Alu 1 292 -20 322 221 12 12 chrX 2849946 2850032 -159749898 - L1ME4a LINE L1 -70 6051 5966 331 132 88 0 chrX 2850104 2850172 -159749758 - L1PA16 LINE L1 0 6166 6093 1983 129 25 0 chrX 2850172 2850489 -159749441 + L1PA16 LINE L1 5771 6095 -71 422 158 184 44 chrX 2850646 2850804 -159749126 - MER45 DNA AcHobo 0 1581 1402 311 253 53 0 chrX 2850816 2850911 -159749019 - L1MA9 LINE L1 -32 6280 6181 2759 200 20 2 chrX 2850912 2851507 -159748423 - L1MA9 LINE L1 -230 6082 5477 715 199 78 15 chrX 2851510 2851716 -159748214 + L1 LINE L1 5063 5281 -865 1895 113 154 6 chrX 2851733 2852077 -159747853 - MSTA LTR MaLR -33 395 1 420 144 117 27 chrX 2852077 2852188 -159747742 + L1M LINE L1 5275 5395 -917 1370 184 65 16 chrX 2852188 2852509 -159747421 + MSTB1 LTR MaLR 1 337 -95 3711 81 2 2 chrX 2852640 2853132 -159746798 - LTR3b LTR ERVK -8 492 1 254 167 0 0 chrX 2853132 2853180 -159746750 - L1MA4 LINE L1 -217 6083 6036 1795 163 10 3 chrX 2853180 2853469 -159746461 + AluJo SINE Alu 5 295 -17 641 373 86 9 chrX 2853548 2853977 -159745953 - L2 LINE L2 -1689 1625 1164 476 315 51 35 chrX 2854165 2854422 -159745508 - L2 LINE L2 -2200 1114 854 560 211 0 0 chrX 2854499 2854622 -159745308 + L1MB4 LINE L1 6058 6180 0 1833 150 3 10 chrX 2854656 2854949 -159744981 + AluJo SINE Alu 1 291 -21 234 91 0 0 chrX 2854949 2854982 -159744948 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1958 149 0 3 chrX 2856287 2856588 -159743342 - AluJb SINE Alu -8 304 5 314 195 49 12 chrX 2856768 2856850 -159743080 + MLT1I LTR MaLR 318 402 -7 2460 46 0 13 chrX 2856944 2857249 -159742681 + AluY SINE Alu 1 301 -10 297 0 0 0 chrX 2857355 2857388 -159742542 + (CA)n Simple_repeat Simple_repeat 2 34 0 998 68 28 11 chrX 2858638 2858814 -159741116 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 2858858 2859083 -159740847 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 2859101 2859254 -159740676 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 2859320 2859411 -159740519 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2756 163 36 0 chrX 2860093 2860596 -159739334 + L1MB3 LINE L1 5653 6173 -10 194 0 0 37 chrX 2862352 2862379 -159737551 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 2863077 2863110 -159736820 + AT_rich Low_complexity Low_complexity 1 33 0 3690 135 30 3 chrX 2863245 2863881 -159736049 + MER39B LTR ERV1 1 653 0 3731 106 12 9 chrX 2863917 2864481 -159735449 - L1PA16 LINE L1 -9 6157 5592 1187 162 194 20 chrX 2865073 2865320 -159734610 + AluJo SINE Alu 1 290 -12 348 164 0 0 chrX 2865320 2865387 -159734543 + G-rich Low_complexity Low_complexity 1 67 0 331 111 93 52 chrX 2865423 2865595 -159734335 + GA-rich Low_complexity Low_complexity 2 180 0 441 305 0 0 chrX 2865718 2865846 -159734084 - MER77 LTR ERV1 0 605 478 877 181 64 5 chrX 2865851 2866055 -159733875 - L1M2 LINE L1 -725 5587 5372 250 138 62 75 chrX 2866057 2866094 -159733836 + L1MA9 LINE L1 6234 6270 -42 1677 159 0 15 chrX 2866094 2866358 -159733572 + AluJb SINE Alu 35 294 -18 250 138 62 75 chrX 2866358 2866400 -159733530 + L1MA9 LINE L1 6270 6312 0 1274 261 55 60 chrX 2866479 2866966 -159732964 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 2868083 2868112 -159731818 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2392 108 13 35 chrX 2868158 2868530 -159731400 - THE1B LTR MaLR 0 364 1 1893 169 0 10 chrX 2868626 2868940 -159730990 + AluJb SINE Alu 1 311 -1 875 219 86 60 chrX 2869108 2869512 -159730418 - MLT1C LTR MaLR -6 618 45 278 266 32 13 chrX 2870413 2870571 -159729359 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 2870527 2870634 -159729296 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 2870634 2870766 -159729164 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 2870813 2870942 -159728988 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 2871159 2871188 -159728742 + AT_rich Low_complexity Low_complexity 1 29 0 2159 109 46 57 chrX 2873045 2873413 -159726517 + THE1B LTR MaLR 1 364 0 288 53 0 0 chrX 2873420 2873458 -159726472 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5059 130 14 1 chrX 2873462 2874292 -159725638 + L1PB4 LINE L1 5314 6154 -2 272 301 194 25 chrX 2875008 2875204 -159724726 - MIR SINE MIR -22 240 12 1775 173 0 10 chrX 2876126 2876426 -159723504 - AluJb SINE Alu -15 297 1 2348 160 17 72 chrX 2876666 2877209 -159722721 - L1MA7 LINE L1 -6 6285 5773 213 39 0 0 chrX 2878477 2878503 -159721427 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 786 205 16 21 chrX 2878955 2879145 -159720785 - MER20 DNA MER1_type -1 218 30 248 194 0 90 chrX 2879130 2879197 -159720733 + MER20 DNA MER1_type 6 66 -153 * 198 0 0 0 chrX 2879374 2879396 -159720534 + (A)n Simple_repeat Simple_repeat 1 22 0 197 282 94 60 chrX 2880077 2880226 -159719704 + MER5B DNA MER1_type 19 172 -6 2060 141 0 3 chrX 2880453 2880752 -159719178 - AluSx SINE Alu -14 298 1 248 120 20 0 chrX 2880867 2880917 -159719013 + (TA)n Simple_repeat Simple_repeat 2 52 0 289 309 197 0 chrX 2881551 2881729 -159718201 + LTR16A1 LTR ERVL 245 457 0 3137 128 59 20 chrX 2881772 2882279 -159717651 + MER1A DNA MER1_type 1 527 0 68 48 0 0 chrX 2882371 2882474 -159717456 + AT_rich Low_complexity Low_complexity 1 103 0 1400 108 0 0 chrX 2882525 2882729 -159717201 - L1PA14 LINE L1 -1 6160 5957 180 275 11 110 chrX 2883194 2883285 -159716645 - MER5A DNA MER1_type -92 97 16 358 273 64 6 chrX 2883449 2883621 -159716309 + Charlie5 DNA MER1_type 553 734 -1878 4886 84 17 0 chrX 2883621 2884311 -159715619 - L1PA13 LINE L1 -23 6140 5439 920 239 42 72 chrX 2884311 2884713 -159715217 + Charlie5 DNA MER1_type 722 1111 -1501 180 0 0 0 chrX 2884912 2884932 -159714998 + (A)n Simple_repeat Simple_repeat 1 20 0 3374 100 13 7 chrX 2885427 2885967 -159713963 + MER41B LTR ERV1 1 543 -92 32 81 0 0 chrX 2886204 2886278 -159713652 + AT_rich Low_complexity Low_complexity 1 74 0 261 250 11 0 chrX 2886281 2886395 -159713535 + (TA)n Simple_repeat Simple_repeat 1 115 0 3900 154 4 1 chrX 2886464 2887140 -159712790 + L1PA15 LINE L1 5462 6139 -26 334 98 0 0 chrX 2888099 2888160 -159711770 - L1MA2 LINE L1 0 6304 6244 434 189 55 24 chrX 2888473 2888600 -159711330 - MER53 DNA DNA -36 153 23 2475 168 8 3 chrX 2889074 2889573 -159710357 + L1PA16 LINE L1 5616 6117 -39 3731 128 24 0 chrX 2889674 2890297 -159709633 + L1PA13 LINE L1 5552 6188 0 540 152 0 22 chrX 2890323 2890415 -159709515 + AluJo SINE Alu 1 90 -222 718 98 9 0 chrX 2890417 2890529 -159709401 - L1PA13 LINE L1 -165 5998 5886 1489 136 0 21 chrX 2890529 2890764 -159709166 + AluJo SINE Alu 82 311 -1 213 100 60 0 chrX 2890798 2890848 -159709082 + GA-rich Low_complexity Low_complexity 1 53 0 233 221 15 0 chrX 2891502 2891570 -159708360 + (CATA)n Simple_repeat Simple_repeat 2 70 0 40 83 0 0 chrX 2891612 2891708 -159708222 + AT_rich Low_complexity Low_complexity 1 96 0 23 0 0 0 chrX 2891746 2891769 -159708161 + AT_rich Low_complexity Low_complexity 1 23 0 293 216 43 14 chrX 2891798 2891937 -159707993 + (TA)n Simple_repeat Simple_repeat 1 143 0 257 288 12 31 chrX 2893040 2893200 -159706730 + L1M4 LINE L1 3325 3481 -2665 334 345 18 36 chrX 2893273 2893441 -159706489 + L1M4 LINE L1 3503 3667 -2479 694 151 8 8 chrX 2894189 2894315 -159705615 + MER41B LTR ERV1 510 635 0 * 3215 239 40 45 chrX 2894315 2894456 -159705474 - Charlie5 DNA MER1_type -1359 1265 1125 2232 121 7 0 chrX 2894456 2894761 -159705169 - AluSx SINE Alu -3 309 3 3215 239 40 45 chrX 2894761 2895890 -159704040 - Charlie5 DNA MER1_type -1499 1125 1 388 270 63 38 chrX 2895890 2896049 -159703881 + L1ME1 LINE L1 2057 2219 -4177 419 276 65 47 chrX 2896051 2896158 -159703772 + L1ME1 LINE L1 2182 2286 -3929 321 94 0 0 chrX 2896158 2896211 -159703719 - L1PA15 LINE L1 -2 6163 6111 419 276 65 47 chrX 2896211 2896443 -159703487 + L1ME1 LINE L1 2286 2527 -3688 1593 275 85 24 chrX 2896568 2897969 -159701961 + L1ME1 LINE L1 3068 4577 -1638 1340 239 75 34 chrX 2897966 2898562 -159701368 + L1ME1 LINE L1 5301 5919 -316 * 30 0 0 0 chrX 2898568 2898598 -159701332 + AT_rich Low_complexity Low_complexity 1 30 0 424 135 116 9 chrX 2898608 2898717 -159701213 - L1MA5A LINE L1 -159 6138 6042 2946 141 32 2 chrX 2898717 2899214 -159700716 - MER75 DNA T2_type -2 512 1 424 135 116 9 chrX 2899214 2899900 -159700030 - L1MA5A LINE L1 -255 6042 5262 600 257 107 48 chrX 2899917 2900271 -159699659 + LTR52 LTR ERVL 42 416 -5 425 274 38 51 chrX 2900271 2900605 -159699325 + L1ME1 LINE L1 5916 6251 -2 2575 55 0 0 chrX 2900694 2901005 -159698925 - AluY SINE Alu 0 311 1 682 170 13 22 chrX 2901430 2901624 -159698306 + L1M2 LINE L1 5304 5494 -689 615 208 28 55 chrX 2901801 2901971 -159697959 - L1ME1 LINE L1 -229 5937 5775 3421 124 9 47 chrX 2901971 2902519 -159697411 - MER1A DNA MER1_type 0 527 1 615 208 28 55 chrX 2902519 2902603 -159697327 - L1ME1 LINE L1 -391 5775 5690 * 1940 142 12 31 chrX 2902577 2902971 -159696959 + L1M2 LINE L1 5417 5817 -360 377 228 120 0 chrX 2902994 2903086 -159696844 - MLT1E LTR MaLR -142 451 349 447 267 73 27 chrX 2903164 2903314 -159696616 - MLT1E LTR MaLR -435 158 2 2362 101 48 25 chrX 2904005 2904361 -159695569 + THE1B LTR MaLR 1 364 0 1550 185 15 4 chrX 2904557 2904827 -159695103 - AluJo SINE Alu -39 273 1 749 133 23 0 chrX 2906494 2906622 -159693308 + L1PB4 LINE L1 5652 5782 -374 1717 188 6 6 chrX 2906747 2907077 -159692853 + L1PB4 LINE L1 5825 6154 -2 1803 174 0 3 chrX 2907746 2908033 -159691897 + AluJb SINE Alu 1 286 -26 502 257 72 7 chrX 2908615 2908767 -159691163 + MLT1E3 LTR MaLR 91 252 -341 1323 153 0 19 chrX 2908785 2909001 -159690929 + AluJo SINE Alu 95 306 -6 838 199 0 20 chrX 2909001 2909152 -159690778 + AluJb SINE Alu 135 282 -30 666 264 46 8 chrX 2909216 2909455 -159690475 + MLT1E3 LTR MaLR 377 624 0 2144 120 3 0 chrX 2909655 2909947 -159689983 - AluSx SINE Alu -6 306 14 204 188 0 0 chrX 2909949 2909981 -159689949 + polypyrimidine Low_complexity Low_complexity 1 32 0 1575 166 24 28 chrX 2910068 2910199 -159689731 + AluJo SINE Alu 1 131 -181 207 0 0 0 chrX 2910199 2910222 -159689708 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1575 166 24 28 chrX 2910222 2910379 -159689551 + AluJo SINE Alu 131 288 -24 2334 81 17 0 chrX 2910471 2910766 -159689164 - AluSg SINE Alu -10 300 1 285 310 41 53 chrX 2911270 2911441 -159688489 - MIR SINE MIR -74 188 20 3704 135 17 2 chrX 2911456 2912041 -159687889 - L1PA16 LINE L1 -9 6157 5564 1373 191 74 83 chrX 2912690 2912958 -159686972 - MLT1C LTR MaLR -4 463 194 199 54 54 0 chrX 2912958 2912995 -159686935 + A-rich Low_complexity Low_complexity 2 40 0 1579 171 15 7 chrX 2913003 2913277 -159686653 - AluJo SINE Alu -36 276 1 1373 191 74 83 chrX 2913277 2913433 -159686497 - MLT1C LTR MaLR -280 187 34 1701 173 35 0 chrX 2913666 2913783 -159686147 + AluJo SINE Alu 1 112 -200 1022 101 11 17 chrX 2913783 2913961 -159685969 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1701 173 35 0 chrX 2913961 2914132 -159685798 + AluJo SINE Alu 112 299 -13 1231 193 51 0 chrX 2915896 2916170 -159683760 - L1MA8 LINE L1 -325 5966 5679 678 188 101 111 chrX 2916170 2916458 -159683472 + L1MA9 LINE L1 6006 6290 -22 509 125 0 0 chrX 2916473 2916545 -159683385 + AluJ/FRAM SINE Alu 217 288 -24 1066 238 87 67 chrX 2916783 2917291 -159682639 + MER77 LTR ERV1 81 598 -7 1280 245 85 32 chrX 2917877 2918053 -159681877 - L1MC4a LINE L1 -614 5560 5666 1800 168 52 19 chrX 2918053 2918416 -159681514 - THE1C LTR MaLR 0 375 1 1280 245 85 32 chrX 2918416 2918828 -159681102 - L1MC4a LINE L1 -507 5667 5278 6940 53 3 0 chrX 2919344 2920670 -159679260 - L1PA7 LINE L1 -3 6151 4816 7454 89 9 4 chrX 2920670 2921795 -159678135 + L1P LINE L1 3648 4778 -1368 885 217 0 0 chrX 2921881 2922033 -159677897 - FRAM SINE Alu -25 151 1 1450 265 38 36 chrX 2922201 2922755 -159677175 - MLT1E2 LTR MaLR -31 595 41 351 238 40 0 chrX 2922913 2923014 -159676916 - MLT1D LTR MaLR -400 105 1 4210 101 12 71 chrX 2923052 2923784 -159676146 + L1PB3 LINE L1 5464 6152 -2 2239 133 0 0 chrX 2924067 2924376 -159675554 + AluSx SINE Alu 1 309 -3 1578 173 49 12 chrX 2924452 2924798 -159675132 - L1MA7 LINE L1 -100 6191 5833 808 171 0 0 chrX 2924879 2925008 -159674922 + FLAM_A SINE Alu 1 129 -4 538 83 0 0 chrX 2925009 2925093 -159674837 + L1PB1 LINE L1 6066 6149 -2 2882 84 17 0 chrX 2925960 2926376 -159673554 - L1PA12 LINE L1 -389 5785 5363 2671 69 40 8 chrX 2926376 2926740 -159673190 + L1PA12 LINE L1 5779 6165 -3 225 196 0 0 chrX 2926742 2926788 -159673142 + (TA)n Simple_repeat Simple_repeat 2 47 0 189 74 0 0 chrX 2926788 2926815 -159673115 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 * 513 0 0 0 chrX 2926814 2926871 -159673059 + (TG)n Simple_repeat Simple_repeat 2 58 0 353 237 26 66 chrX 2926879 2927031 -159672899 + MER101 LTR ERV1 298 443 -31 733 175 0 0 chrX 2927624 2927738 -159672192 + FLAM_C SINE Alu 5 118 -15 23 0 0 0 chrX 2927738 2927761 -159672169 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 2927789 2927812 -159672118 + AT_rich Low_complexity Low_complexity 1 23 0 247 235 20 10 chrX 2928995 2929093 -159670837 + GA-rich Low_complexity Low_complexity 2 100 0 1559 148 22 25 chrX 2929115 2929392 -159670538 + L1PB4 LINE L1 5876 6151 -5 21 36 0 0 chrX 2929546 2929574 -159670356 + AT_rich Low_complexity Low_complexity 1 28 0 241 167 17 17 chrX 2930054 2930114 -159669816 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1724 194 12 0 chrX 2930145 2930480 -159669450 - MER7A DNA MER2_type -9 337 1 532 199 7 7 chrX 2930488 2930634 -159669296 + (TCCA)n Simple_repeat Simple_repeat 4 149 0 188 184 20 0 chrX 2931484 2931533 -159668397 + CT-rich Low_complexity Low_complexity 1 50 0 * 379 236 6 6 chrX 2931532 2931710 -159668220 + (CA)n Simple_repeat Simple_repeat 1 178 0 4025 130 57 28 chrX 2932195 2932919 -159667011 - L1PA16 LINE L1 -3 6163 5419 1358 219 77 87 chrX 2933042 2933528 -159666402 - LTR38B LTR ERV1 -18 592 112 2144 120 3 0 chrX 2933528 2933829 -159666101 + AluSx SINE Alu 1 302 -10 1358 219 77 87 chrX 2933829 2933940 -159665990 - LTR38B LTR ERV1 -498 112 1 3311 127 42 14 chrX 2934009 2934575 -159665355 + L1MA5A LINE L1 5710 6291 -6 22 0 0 0 chrX 2934575 2934597 -159665333 + AT_rich Low_complexity Low_complexity 1 22 0 3203 179 13 24 chrX 2934599 2935271 -159664659 + L1MB3 LINE L1 5509 6173 -10 618 220 17 95 chrX 2935619 2935860 -159664070 + MER96B DNA MER1_type? 2 223 -194 810 192 11 16 chrX 2935938 2936120 -159663810 + MER20 DNA MER1_type 36 216 -3 2331 73 7 20 chrX 2936597 2936898 -159663032 + AluY SINE Alu 1 297 -14 4757 133 18 2 chrX 2937556 2938389 -159661541 - L1PB3 LINE L1 -4 6150 5305 541 266 28 0 chrX 2939156 2939299 -159660631 - MER20 DNA MER1_type -65 154 8 1893 85 4 4 chrX 2939299 2939570 -159660360 + L1PA13 LINE L1 5666 5936 -227 879 204 0 0 chrX 2940289 2940608 -159659322 + (ATG)n Simple_repeat Simple_repeat 1 319 0 2018 119 26 10 chrX 2940911 2941213 -159658717 - AluSx SINE Alu -5 307 1 23 0 0 0 chrX 2941919 2941942 -159657988 + AT_rich Low_complexity Low_complexity 1 23 0 319 397 57 10 chrX 2943375 2943569 -159656361 - MIR SINE MIR -40 222 20 1137 236 81 17 chrX 2944444 2944741 -159655189 - MSTD LTR MaLR 0 396 81 26 0 0 0 chrX 2944741 2944767 -159655163 + AT_rich Low_complexity Low_complexity 1 26 0 1721 196 21 0 chrX 2944773 2945058 -159654872 - AluJo SINE Alu -21 291 1 286 206 9 92 chrX 2945229 2945457 -159654473 + MSTB1 LTR MaLR 224 432 0 225 94 0 0 chrX 2945992 2946024 -159653906 + (TA)n Simple_repeat Simple_repeat 2 33 0 327 332 56 42 chrX 2946036 2946250 -159653680 - MIR SINE MIR -15 247 31 1253 210 41 0 chrX 2946401 2946696 -159653234 - L1MA4 LINE L1 -11 6289 5983 1960 148 127 16 chrX 2946726 2947111 -159652819 - MSTA LTR MaLR 0 428 1 180 0 0 0 chrX 2947212 2947232 -159652698 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1102 133 49 18 chrX 2947580 2947806 -159652124 - L1MA8 LINE L1 -86 6205 5973 606 195 32 0 chrX 2947839 2947962 -159651968 + MER20 DNA MER1_type 93 219 0 2069 125 6 3 chrX 2948166 2948477 -159651453 + AluSx SINE Alu 1 312 0 364 133 235 0 chrX 2948587 2948685 -159651245 + L1MB7 LINE L1 5841 5961 -223 2209 193 52 9 chrX 2948994 2949440 -159650490 - MER70A LTR ERVL -7 465 1 1685 174 3 11 chrX 2950316 2950598 -159649332 - AluJo SINE Alu -1 311 32 214 370 28 28 chrX 2950999 2951107 -159648823 - MIR SINE MIR -152 110 3 1418 186 127 28 chrX 2951250 2951643 -159648287 + MSTB1 LTR MaLR 1 432 0 392 182 0 0 chrX 2952173 2952239 -159647691 - MER5A DNA MER1_type -123 66 1 362 281 91 39 chrX 2952342 2952573 -159647357 + MLT1K LTR MaLR 346 588 0 3488 15 0 0 chrX 2953042 2953441 -159646489 + L1PA2 LINE L1 5756 6154 -1 288 0 0 0 chrX 2953835 2953867 -159646063 + (CA)n Simple_repeat Simple_repeat 1 32 0 639 336 34 0 chrX 2954563 2954771 -159645159 + MIR SINE MIR 30 244 -18 378 87 130 0 chrX 2955013 2955082 -159644848 - MADE1 DNA Mariner 0 80 3 * 1702 231 61 9 chrX 2955082 2955538 -159644392 - MLT1D LTR MaLR -20 485 6 287 152 0 0 chrX 2955546 2955592 -159644338 - MLT1D LTR MaLR -457 48 3 284 128 21 0 chrX 2955595 2955642 -159644288 - MLT1D LTR MaLR -455 50 3 300 125 42 0 chrX 2955645 2955693 -159644237 - MLT1D LTR MaLR -455 50 1 274 167 21 0 chrX 2955694 2955742 -159644188 - MLT1D LTR MaLR -455 50 2 269 146 42 0 chrX 2955786 2955834 -159644096 - MLT1D LTR MaLR -455 50 1 248 78 20 59 chrX 2955836 2955887 -159644043 - MLT1D LTR MaLR -456 49 1 232 329 85 0 chrX 2955955 2956037 -159643893 - MIR SINE MIR -12 250 162 865 209 5 0 chrX 2956315 2956502 -159643428 + L1M2 LINE L1 5328 5515 -797 1453 233 47 13 chrX 2957013 2957190 -159642740 - MLT1C LTR MaLR -3 464 294 2315 204 28 22 chrX 2957190 2957699 -159642231 - MLT2B2 LTR ERVL 0 515 4 1453 233 47 13 chrX 2957699 2957968 -159641962 - MLT1C LTR MaLR -173 294 3 2187 203 25 48 chrX 2958942 2959425 -159640505 + MER70A LTR ERVL 1 472 0 2174 176 21 28 chrX 2960331 2960768 -159639162 + Tigger2a DNA MER2_type 1 434 0 3925 119 5 5 chrX 2960862 2961444 -159638486 + L1PA15 LINE L1 5579 6160 -5 2413 211 61 2 chrX 2961803 2961841 -159638089 - MLT2B1 LTR ERVL -2 518 484 925 69 34 11 chrX 2961841 2962016 -159637914 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 2413 211 61 2 chrX 2962016 2962466 -159637464 - MLT2B1 LTR ERVL -36 484 1 508 249 10 58 chrX 2962545 2962721 -159637209 + MER20 DNA MER1_type 1 184 -35 429 66 0 0 chrX 2962721 2962782 -159637148 + (CA)n Simple_repeat Simple_repeat 2 62 0 237 33 0 0 chrX 2962781 2962811 -159637119 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 508 249 10 58 chrX 2962782 2962839 -159637091 + MER20 DNA MER1_type 184 195 -24 913 258 19 19 chrX 2963112 2963372 -159636558 + MLT1D LTR MaLR 246 505 0 1141 187 34 8 chrX 2964003 2964238 -159635692 - MSTB1 LTR MaLR 0 432 192 458 117 68 0 chrX 2964238 2964341 -159635589 + CT-rich Low_complexity Low_complexity 4 113 0 1944 150 6 31 chrX 2964359 2964679 -159635251 - AluJb SINE Alu 0 312 1 892 246 5 0 chrX 2964680 2964875 -159635055 - MSTB1 LTR MaLR -230 196 1 269 287 75 11 chrX 2965206 2965300 -159634630 + MLT1I LTR MaLR 160 259 -150 1528 197 0 3 chrX 2965393 2965703 -159634227 - AluSc SINE Alu 0 309 1 2059 118 30 7 chrX 2967254 2967551 -159632379 - AluSx SINE Alu -8 304 1 24 53 0 0 chrX 2968214 2968252 -159631678 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chrX 2968252 2968279 -159631651 + (CA)n Simple_repeat Simple_repeat 2 28 0 1880 167 0 16 chrX 2968689 2969006 -159630924 + AluSx SINE Alu 1 312 0 236 330 33 11 chrX 2970170 2970261 -159629669 - MIR SINE MIR -160 102 10 646 221 37 12 chrX 2970505 2970668 -159629262 - MLT1A1 LTR MaLR 0 374 208 1309 197 0 9 chrX 2970723 2970974 -159628956 - AluJo SINE Alu 0 309 61 775 176 7 7 chrX 2970979 2971121 -159628809 - MLT1A1 LTR MaLR -214 151 10 233 274 0 0 chrX 2971497 2971559 -159628371 + MER68 LTR ERV1 236 297 -265 271 128 51 13 chrX 2971991 2972069 -159627861 + GA-rich Low_complexity Low_complexity 2 82 0 1739 132 42 4 chrX 2973126 2973391 -159626539 + AluSg SINE Alu 35 309 -1 2095 110 6 25 chrX 2973715 2974033 -159625897 + AluSx SINE Alu 1 312 0 889 249 93 22 chrX 2974226 2974542 -159625388 - MSTD LTR MaLR 0 396 1 21 0 0 0 chrX 2974959 2974980 -159624950 + AT_rich Low_complexity Low_complexity 1 21 0 206 216 27 14 chrX 2975109 2975183 -159624747 + (TA)n Simple_repeat Simple_repeat 2 76 0 25 0 0 0 chrX 2975421 2975446 -159624484 + AT_rich Low_complexity Low_complexity 1 25 0 363 167 24 24 chrX 2975491 2975575 -159624355 + L1MC2 LINE L1 6253 6336 -8 1959 217 102 15 chrX 2976098 2976687 -159623243 + LTR48B LTR ERV1 3 642 -2 296 192 86 102 chrX 2976707 2976887 -159623043 - LTR49 LTR ERV1 -50 737 556 2151 216 26 56 chrX 2976887 2977457 -159622473 + MLT2B3 LTR ERVL 2 554 0 296 192 86 102 chrX 2977457 2977493 -159622437 - LTR49 LTR ERV1 -231 556 332 531 195 51 0 chrX 2977493 2977611 -159622319 - L1MB5 LINE L1 -78 6096 5973 990 136 29 15 chrX 2978226 2978432 -159621498 + L1P4 LINE L1 5138 5346 -800 1285 89 0 0 chrX 2978432 2978590 -159621340 - AluSg/x SINE Alu -8 302 145 482 133 41 0 chrX 2978600 2978698 -159621232 + L1P4 LINE L1 5338 5439 -722 242 266 134 59 chrX 2979350 2979530 -159620400 - MIR3 SINE MIR -62 146 2 324 94 0 0 chrX 2979843 2979896 -159620034 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 35 0 0 chrX 2980236 2980265 -159619665 + AT_rich Low_complexity Low_complexity 1 29 0 2057 145 0 0 chrX 2981526 2981822 -159618108 - AluSx SINE Alu -16 296 1 236 236 28 28 chrX 2981856 2981928 -159618002 - HAL1b LINE L1 -781 567 496 247 193 0 18 chrX 2982104 2982161 -159617769 + L1M4 LINE L1 2964 3019 -3127 688 225 70 5 chrX 2982298 2982485 -159617445 + L1MB7 LINE L1 5814 6012 -172 1170 141 6 6 chrX 2982486 2982663 -159617267 - AluJb SINE Alu -2 310 134 234 0 0 0 chrX 2982664 2982690 -159617240 + (TA)n Simple_repeat Simple_repeat 2 27 0 2272 90 0 26 chrX 2982690 2983002 -159616928 - AluSx SINE Alu -8 304 1 330 307 46 60 chrX 2983142 2983360 -159616570 + L1MB8 LINE L1 5955 6169 -9 1919 134 26 67 chrX 2983492 2983879 -159616051 - L1PA14 LINE L1 -3 6158 5788 1953 154 27 29 chrX 2983937 2984313 -159615617 - THE1C LTR MaLR 0 375 1 207 0 0 0 chrX 2984546 2984569 -159615361 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1301 33 6 22 chrX 2984595 2984777 -159615153 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 293 118 20 0 chrX 2984777 2984828 -159615102 + GA-rich Low_complexity Low_complexity 3 54 0 1927 104 0 7 chrX 2984952 2985241 -159614689 - L1PA15 LINE L1 0 6165 5879 290 36 455 0 chrX 2985933 2985988 -159613942 + MADE1 DNA Mariner 1 80 0 2460 133 5 5 chrX 2986398 2986783 -159613147 - L1PA16 LINE L1 -9 6157 5773 1015 233 96 60 chrX 2987733 2988180 -159611750 - MLT1C LTR MaLR 0 467 5 753 218 110 47 chrX 2988195 2988512 -159611418 - MLT1C LTR MaLR -123 344 8 719 215 89 39 chrX 2988529 2988851 -159611079 - MLT1C LTR MaLR -122 345 1 1886 175 23 0 chrX 2988871 2989174 -159610756 + AluJo SINE Alu 3 312 0 250 325 39 0 chrX 2989308 2989385 -159610545 + MIR3 SINE MIR 105 184 -24 907 228 43 63 chrX 2989830 2990178 -159609752 + MLT2B1 LTR ERVL 6 369 -45 537 132 25 0 chrX 2990178 2990299 -159609631 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 352 103 75 0 chrX 2990398 2990505 -159609425 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 191 44 89 0 chrX 2990577 2990622 -159609308 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 295 165 31 21 chrX 2990775 2990872 -159609058 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 296 175 0 0 chrX 2990872 2990935 -159608995 + MLT2B1 LTR ERVL 458 520 0 202 101 72 0 chrX 2991254 2991323 -159608607 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 189 213 0 0 chrX 2992273 2992320 -159607610 + CT-rich Low_complexity Low_complexity 3 49 0 182 146 0 24 chrX 2992337 2992378 -159607552 + (TTTC)n Simple_repeat Simple_repeat 4 43 0 289 187 28 19 chrX 2992426 2992533 -159607397 + CT-rich Low_complexity Low_complexity 2 109 0 1229 132 5 18 chrX 2993967 2994186 -159605744 + L1PB2 LINE L1 5734 5949 -202 247 259 49 98 chrX 2994347 2994388 -159605542 - L2 LINE L2 -1292 2022 1981 2213 122 0 0 chrX 2994388 2994682 -159605248 + AluSx SINE Alu 3 296 -16 247 259 49 98 chrX 2994682 2994783 -159605147 - L2 LINE L2 -1333 1981 1887 462 250 93 56 chrX 2995107 2995251 -159604679 + L1MC4 LINE L1 7750 7887 -155 393 22 0 0 chrX 2995251 2995297 -159604633 + (TG)n Simple_repeat Simple_repeat 1 46 0 462 250 93 56 chrX 2995297 2995420 -159604510 + L1MC4 LINE L1 7887 8027 -15 6752 92 22 4 chrX 2995784 2997509 -159602421 + L1PA8 LINE L1 4425 6168 -4 1898 131 10 74 chrX 2999209 2999387 -159600543 + MLT1B LTR MaLR 2 190 -206 2166 96 4 0 chrX 2999387 2999701 -159600229 + AluY SINE Alu 1 315 0 1898 131 10 74 chrX 2999701 2999715 -159600215 + MLT1B LTR MaLR 190 203 -193 2359 92 3 0 chrX 2999715 3000021 -159599909 + AluSp SINE Alu 1 307 -6 1898 131 10 74 chrX 3000021 3000243 -159599687 + MLT1B LTR MaLR 203 396 0 551 198 16 2 chrX 3000243 3000436 -159599494 + MLT1B LTR MaLR 158 390 0 351 94 0 0 chrX 3000530 3000583 -159599347 - MLT2A2 LTR ERVL -2 451 399 240 214 0 0 chrX 3000584 3000640 -159599290 + (TA)n Simple_repeat Simple_repeat 2 57 0 2949 77 14 22 chrX 3000640 3001056 -159598874 - MLT2A2 LTR ERVL -40 413 1 612 243 145 26 chrX 3001440 3001744 -159598186 + MLT1D LTR MaLR 22 361 -144 356 119 34 0 chrX 3001770 3001829 -159598101 - MLT2A2 LTR ERVL -136 317 257 1088 243 66 30 chrX 3001841 3002248 -159597682 + MLT1C LTR MaLR 46 467 0 189 339 160 16 chrX 3002545 3002852 -159597078 - L2 LINE L2 -2330 984 634 521 175 35 9 chrX 3003441 3003555 -159596375 - L1MB5 LINE L1 -8 6166 6050 1574 92 4 31 chrX 3004434 3004694 -159595236 + L1MA1 LINE L1 5978 6230 -72 2389 128 0 22 chrX 3005199 3005567 -159594363 + THE1B LTR MaLR 1 360 -4 616 246 134 45 chrX 3005872 3006185 -159593745 + MLT1C LTR MaLR 5 345 -122 1249 215 61 86 chrX 3006199 3006674 -159593256 + MLT1C LTR MaLR 5 467 0 21 36 0 0 chrX 3006720 3006748 -159593182 + AT_rich Low_complexity Low_complexity 1 28 0 4652 205 37 6 chrX 3006786 3008116 -159591814 + L1MC1 LINE L1 4897 6259 -74 781 271 104 26 chrX 3008171 3008555 -159591375 - MLT1C LTR MaLR -53 414 1 1915 205 8 51 chrX 3009633 3009772 -159590158 + L1MB5 LINE L1 5695 5838 -336 1811 167 26 13 chrX 3009772 3010078 -159589852 - AluJo SINE Alu -2 310 1 1915 205 8 51 chrX 3010078 3010430 -159589500 + L1MB5 LINE L1 5838 6165 -9 201 147 0 0 chrX 3010462 3010496 -159589434 + (A)n Simple_repeat Simple_repeat 1 34 0 300 269 170 20 chrX 3010701 3010845 -159589085 + MER5A DNA MER1_type 14 189 0 1836 151 30 10 chrX 3011485 3011969 -159587961 + AluJo SINE Alu 1 312 0 1264 94 0 0 chrX 3011770 3012091 -159587839 + (GAAA)n Simple_repeat Simple_repeat 1 321 0 341 305 37 63 chrX 3012466 3012656 -159587274 + L1M4 LINE L1 2724 2908 -3238 1948 179 3 0 chrX 3012710 3013012 -159586918 + AluJo SINE Alu 1 303 -9 288 0 0 0 chrX 3013012 3013044 -159586886 + (TA)n Simple_repeat Simple_repeat 2 33 0 255 202 11 180 chrX 3013303 3013486 -159586444 - MLT1H LTR MaLR -395 154 3 221 92 92 0 chrX 3013574 3013650 -159586280 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 975 114 17 6 chrX 3013663 3013838 -159586092 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 696 139 17 17 chrX 3013877 3014057 -159585873 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chrX 3014156 3014184 -159585746 + AT_rich Low_complexity Low_complexity 1 28 0 3146 193 61 8 chrX 3014456 3015212 -159584718 + L1MA9 LINE L1 5489 6284 -28 183 159 0 72 chrX 3016478 3016547 -159583383 + CT-rich Low_complexity Low_complexity 4 67 0 201 320 67 0 chrX 3017195 3017270 -159582660 + polypurine Low_complexity Low_complexity 3 82 0 275 49 24 0 chrX 3017345 3017386 -159582544 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 2072 94 0 0 chrX 3018089 3018354 -159581576 + AluSq SINE Alu 1 265 -48 189 0 0 0 chrX 3018390 3018411 -159581519 + (TAA)n Simple_repeat Simple_repeat 2 22 0 360 0 0 0 chrX 3018511 3018551 -159581379 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 292 322 6 49 chrX 3218727 3218910 -159381020 + G-rich Low_complexity Low_complexity 1 175 0 1426 142 103 36 chrX 3219961 3220181 -159379749 - MSTA LTR MaLR -9 419 172 2504 53 3 0 chrX 3220181 3220483 -159379447 - AluY SINE Alu -7 304 2 1426 142 103 36 chrX 3220483 3220564 -159379366 - MSTA LTR MaLR -256 172 98 2463 163 28 79 chrX 3221010 3221619 -159378311 - L1MB3 LINE L1 -4 6179 5602 1672 178 28 71 chrX 3221596 3221689 -159378241 - L1MB3 LINE L1 -1755 4391 4296 * 1937 137 46 0 chrX 3221689 3221974 -159377956 - AluSx SINE Alu -14 298 1 1672 178 28 71 chrX 3221974 3222021 -159377909 - L1MB3 LINE L1 -1850 4296 4249 1861 115 0 95 chrX 3222021 3222359 -159377571 - AluSx SINE Alu -6 306 1 1672 178 28 71 chrX 3222359 3222750 -159377180 - L1MB3 LINE L1 -1897 4249 3882 1339 118 9 5 chrX 3223252 3223464 -159376466 + THE1A LTR MaLR 86 298 -57 1400 70 0 10 chrX 3223492 3223691 -159376239 + LTR43 LTR ERV1 398 594 -8 564 105 42 0 chrX 3223706 3223801 -159376129 + L1MA10 LINE L1 6236 6334 0 305 182 0 15 chrX 3225656 3225722 -159374208 + MLT1I LTR MaLR 98 162 -492 1811 107 10 10 chrX 3225769 3226058 -159373872 - L1PA13 LINE L1 -2 6161 5873 1968 149 0 3 chrX 3226831 3227133 -159372797 - AluJb SINE Alu -7 305 5 314 195 49 12 chrX 3227313 3227395 -159372535 + MLT1I LTR MaLR 318 402 -7 2460 46 0 13 chrX 3227489 3227794 -159372136 + AluY SINE Alu 1 301 -10 297 0 0 0 chrX 3227900 3227933 -159371997 + (CA)n Simple_repeat Simple_repeat 2 34 0 998 68 28 11 chrX 3229183 3229359 -159370571 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 3229403 3229628 -159370302 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 3229646 3229799 -159370131 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 3229865 3229956 -159369974 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2756 163 36 0 chrX 3230638 3231141 -159368789 + L1MB3 LINE L1 5653 6173 -10 194 0 0 37 chrX 3232897 3232924 -159367006 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 3233622 3233655 -159366275 + AT_rich Low_complexity Low_complexity 1 33 0 3690 135 30 3 chrX 3233791 3234427 -159365503 + MER39B LTR ERV1 1 653 0 3731 106 12 9 chrX 3234463 3235027 -159364903 - L1PA16 LINE L1 -9 6157 5592 1228 158 195 16 chrX 3235619 3235865 -159364065 + AluJo SINE Alu 1 290 -12 558 148 0 0 chrX 3235865 3235966 -159363964 + (GGGGA)n Simple_repeat Simple_repeat 1 101 0 328 215 0 42 chrX 3235957 3236101 -159363829 + GA-rich Low_complexity Low_complexity 1 138 0 * 249 273 13 26 chrX 3236101 3236178 -159363752 + A-rich Low_complexity Low_complexity 1 76 0 471 289 0 0 chrX 3236261 3236389 -159363541 - MER77 LTR ERV1 0 605 478 898 176 64 5 chrX 3236394 3236598 -159363332 - L1M2 LINE L1 -725 5587 5372 250 138 62 75 chrX 3236600 3236637 -159363293 + L1MA9 LINE L1 6234 6270 -42 1677 159 0 15 chrX 3236637 3236901 -159363029 + AluJb SINE Alu 35 294 -18 250 138 62 75 chrX 3236901 3236943 -159362987 + L1MA9 LINE L1 6270 6312 0 1274 261 55 60 chrX 3237022 3237509 -159362421 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 3238626 3238655 -159361275 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2392 108 13 35 chrX 3238701 3239073 -159360857 - THE1B LTR MaLR 0 364 1 1893 169 0 10 chrX 3239169 3239483 -159360447 + AluJb SINE Alu 1 311 -1 875 219 86 60 chrX 3239652 3240056 -159359874 - MLT1C LTR MaLR -6 618 45 278 266 32 13 chrX 3240957 3241115 -159358815 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 3241071 3241178 -159358752 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 3241178 3241310 -159358620 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 3241357 3241486 -159358444 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 3241703 3241732 -159358198 + AT_rich Low_complexity Low_complexity 1 29 0 5092 135 20 7 chrX 3243562 3243588 -159356342 + L1PB4 LINE L1 5245 5269 -887 2149 109 46 57 chrX 3243588 3243955 -159355975 + THE1B LTR MaLR 1 363 -1 5092 135 20 7 chrX 3243955 3244835 -159355095 + L1PB4 LINE L1 5269 6154 -2 272 301 194 25 chrX 3245555 3245751 -159354179 - MIR SINE MIR -22 240 12 236 212 15 0 chrX 3246874 3246940 -159352990 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 2250 169 43 0 chrX 3247149 3247563 -159352367 - MSTB1 LTR MaLR 0 432 1 1049 137 6 17 chrX 3247627 3247802 -159352128 + MSTB1 LTR MaLR 259 431 -1 595 248 63 76 chrX 3248007 3248374 -159351556 + L1ME3 LINE L1 5793 6154 -8 326 320 72 11 chrX 3248537 3248718 -159351212 + L1M4 LINE L1 3239 3430 -2716 314 144 56 11 chrX 3250019 3250109 -159349821 + GA-rich Low_complexity Low_complexity 1 94 0 2163 177 60 20 chrX 3250936 3251387 -159348543 + MLT2B2 LTR ERVL 1 469 -46 378 175 32 7 chrX 3251390 3251544 -159348386 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 257 59 0 0 chrX 3251555 3251589 -159348341 + MLT2B2 LTR ERVL 480 513 -2 491 232 64 8 chrX 3252373 3252498 -159347432 + MER20 DNA MER1_type 1 132 -87 1553 71 0 0 chrX 3252580 3252776 -159347154 + MER107 DNA MER1_type 1 196 -1 2168 122 3 3 chrX 3253127 3253439 -159346491 - AluSx SINE Alu 0 312 1 618 313 85 25 chrX 3254154 3254553 -159345377 - HERV16 LTR ERVL -896 4868 4446 1569 236 115 62 chrX 3255120 3255713 -159344217 + MLT1E3 LTR MaLR 1 624 0 1828 174 124 16 chrX 3256752 3257138 -159342792 - MSTA LTR MaLR 0 428 1 1231 173 35 143 chrX 3258109 3258514 -159341416 - MLT1A1 LTR MaLR -1 364 4 370 283 28 0 chrX 3258917 3259023 -159340907 - MER81 DNA DNA -1 113 5 264 325 82 49 chrX 3259078 3259321 -159340609 - L2 LINE L2 -659 2655 2405 763 207 101 48 chrX 3260326 3260534 -159339396 - MER20 DNA MER1_type 0 219 1 384 40 0 0 chrX 3260890 3260940 -159338990 + (TG)n Simple_repeat Simple_repeat 2 51 0 574 350 84 24 chrX 3261123 3261660 -159338270 - HERV16 LTR ERVL -2448 3316 2748 528 323 85 26 chrX 3261959 3262349 -159337581 - HERV16 LTR ERVL -4223 773 361 622 310 24 0 chrX 3262653 3262866 -159337064 - HERV16 LTR ERVL -3814 1182 965 4373 141 35 16 chrX 3263022 3263831 -159336099 + L1PB4 LINE L1 5330 6153 -3 260 120 60 27 chrX 3263971 3264121 -159335809 + (TA)n Simple_repeat Simple_repeat 2 156 0 341 165 77 24 chrX 3264150 3264283 -159335647 + (TA)n Simple_repeat Simple_repeat 1 146 -33 2338 99 0 0 chrX 3264283 3264577 -159335353 - AluSg SINE Alu -16 294 1 341 165 77 24 chrX 3264577 3264613 -159335317 + (TA)n Simple_repeat Simple_repeat 146 179 0 257 128 24 64 chrX 3264617 3264742 -159335188 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 618 105 42 0 chrX 3266201 3266296 -159333634 - L1MA10 LINE L1 0 6334 6236 4113 103 10 5 chrX 3266311 3266894 -159333036 - LTR43 LTR ERV1 -8 594 9 269 206 0 16 chrX 3266896 3266959 -159332971 - L1MA10 LINE L1 -110 6224 6163 5581 113 21 7 chrX 3266990 3267758 -159332172 + MER4E LTR ERV1 1 779 0 371 127 0 56 chrX 3267761 3267832 -159332098 - L1MB1 LINE L1 -26 6163 6097 768 165 181 6 chrX 3267846 3268028 -159331902 + MER21A LTR ERV1 6 219 -712 2935 141 45 8 chrX 3268029 3268510 -159331420 + LTR1B LTR ERV1 1 499 -327 1580 183 25 28 chrX 3268510 3268952 -159330978 + LTR2B LTR ERV1 1 490 0 2782 78 0 0 chrX 3268952 3269309 -159330621 + Harlequin LTR ERV1 1 357 -6539 11339 22 0 0 chrX 3269309 3271323 -159328607 - L1PA2 LINE L1 0 6155 4142 39532 199 4 10 chrX 3271323 3278363 -159321567 + Harlequin LTR ERV1 814 7812 -1 1939 190 68 29 chrX 3278382 3278824 -159321106 + LTR2B LTR ERV1 32 490 0 898 117 114 80 chrX 3278824 3279088 -159320842 + LTR1B LTR ERV1 496 784 -1 674 227 8 0 chrX 3279129 3279261 -159320669 + MER21B LTR ERV1 279 411 -452 3008 136 54 24 chrX 3279267 3279851 -159320079 - MER4B LTR ERV1 -6 773 5 2571 143 14 24 chrX 3279857 3280278 -159319652 + MER21A LTR ERV1 506 922 -9 932 193 53 0 chrX 3280288 3280475 -159319455 + L1MB1 LINE L1 5917 6113 -76 1085 35 35 17 chrX 3281448 3281620 -159318310 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1700 160 0 7 chrX 3281621 3281896 -159318034 - AluJo SINE Alu -38 274 2 2257 106 0 0 chrX 3282070 3282372 -159317558 - AluY SINE Alu -9 302 1 2513 134 7 36 chrX 3282392 3282810 -159317120 - Tigger2a DNA MER2_type -4 430 25 210 143 0 0 chrX 3283205 3283240 -159316690 + (T)n Simple_repeat Simple_repeat 1 35 0 1852 181 0 6 chrX 3283257 3283571 -159316359 + AluJb SINE Alu 1 312 0 1030 113 0 0 chrX 3284144 3284277 -159315653 - AluSq/x SINE Alu -179 133 1 11994 110 24 4 chrX 3284345 3284734 -159315196 + L1P3 LINE L1 10 390 -6061 198 71 0 0 chrX 3284734 3284762 -159315168 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 11994 110 24 4 chrX 3284762 3286133 -159313797 + L1P3 LINE L1 390 1785 -4666 291 185 33 0 chrX 3286135 3286227 -159313703 + GA-rich Low_complexity Low_complexity 2 96 0 2203 102 0 3 chrX 3287189 3287474 -159312456 + AluSx SINE Alu 1 284 -28 511 179 18 30 chrX 3287608 3287732 -159312198 + MLT1C LTR MaLR 1 108 -359 1296 158 48 9 chrX 3287732 3287960 -159311970 - AluJo SINE Alu -75 237 1 29 47 0 0 chrX 3288134 3288177 -159311753 + AT_rich Low_complexity Low_complexity 1 43 0 778 152 9 0 chrX 3288310 3288422 -159311508 - FLAM_C SINE Alu -19 124 12 189 0 0 0 chrX 3288978 3288999 -159310931 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 1647 175 3 27 chrX 3289125 3289422 -159310508 + AluJo SINE Alu 1 290 -22 1208 230 36 48 chrX 3289701 3290057 -159309873 - L1MD2 LINE L1 0 6359 6008 1930 163 3 0 chrX 3290259 3290554 -159309376 - AluJo SINE Alu -16 296 1 1711 191 75 9 chrX 3290810 3291129 -159308801 + MER2 DNA MER2_type 4 343 -1 5375 60 0 6 chrX 3291366 3292005 -159307925 - L1PA8 LINE L1 -12 6160 5526 237 143 42 34 chrX 3292698 3292817 -159307113 + C-rich Low_complexity Low_complexity 4 123 0 1501 171 66 21 chrX 3293259 3293546 -159306384 - AluJo SINE Alu -9 303 4 5715 132 17 7 chrX 3294168 3295123 -159304807 - L1PA16 LINE L1 0 6166 5203 23 0 0 0 chrX 3295394 3295417 -159304513 + AT_rich Low_complexity Low_complexity 1 23 0 3055 251 71 14 chrX 3295417 3296323 -159303607 - L1MC4a LINE L1 -2 7806 6850 230 213 0 0 chrX 3296401 3296448 -159303482 - L1MA4 LINE L1 -14 6286 6240 * 1173 124 1 0 chrX 3296422 3296604 -159303326 + L1PA13 LINE L1 5636 5819 -342 1502 137 22 0 chrX 3296605 3296832 -159303098 + L1PA13 LINE L1 5931 6162 -1 50 42 0 0 chrX 3297777 3297848 -159302082 + AT_rich Low_complexity Low_complexity 1 71 0 704 238 29 121 chrX 3298450 3298623 -159301307 + MLT1E1 LTR MaLR 2 189 -465 3004 110 2 5 chrX 3298623 3299040 -159300890 - L1PA13 LINE L1 -2 6161 5746 704 238 29 121 chrX 3299040 3299356 -159300574 + MLT1E1 LTR MaLR 189 424 -230 238 167 24 0 chrX 3299361 3299403 -159300527 - MLT1E LTR MaLR -272 321 279 1911 152 0 33 chrX 3299496 3299799 -159300131 + AluJb SINE Alu 1 293 -19 2880 103 15 2 chrX 3300355 3300763 -159299167 + L1PA13 LINE L1 5732 6144 -19 369 0 0 0 chrX 3301030 3301071 -159298859 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1788 164 0 4 chrX 3301072 3301353 -159298577 - AluJo SINE Alu -32 280 1 660 102 0 0 chrX 3301882 3301980 -159297950 + (CA)n Simple_repeat Simple_repeat 2 99 0 803 59 0 2 chrX 3302046 3302302 -159297628 + AluY SINE Alu 1 301 -10 309 316 28 12 chrX 3302314 3302457 -159297473 + MIR SINE MIR 12 103 -105 1626 161 14 27 chrX 3302461 3302753 -159297177 + AluJb SINE Alu 1 288 -24 1820 128 29 4 chrX 3303616 3303889 -159296041 - L1PA16 LINE L1 -5 6161 5882 807 296 117 49 chrX 3303889 3304860 -159295070 - L1M4 LINE L1 -2958 3188 2152 303 28 0 0 chrX 3304860 3304896 -159295034 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2292 106 3 0 chrX 3305081 3305383 -159294547 - AluSx SINE Alu -9 303 1 1512 145 9 112 chrX 3306049 3306380 -159293550 - AluJb SINE Alu -14 298 2 276 0 29 0 chrX 3306727 3306761 -159293169 + MADE1 DNA Mariner 46 80 0 1426 242 97 30 chrX 3307758 3308253 -159291677 + MLT1H LTR MaLR 1 528 -21 29 0 0 0 chrX 3308737 3308766 -159291164 + AT_rich Low_complexity Low_complexity 1 29 0 2081 138 0 0 chrX 3308808 3309104 -159290826 - AluSx SINE Alu -3 309 14 1888 155 0 29 chrX 3309854 3310164 -159289766 + AluJo SINE Alu 1 301 -11 2401 43 4 0 chrX 3310213 3310512 -159289418 - AluY SINE Alu 0 300 1 1643 162 49 0 chrX 3310891 3311010 -159288920 + AluJo SINE Alu 1 113 -199 321 26 0 0 chrX 3311010 3311048 -159288882 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1643 162 49 0 chrX 3311048 3311212 -159288718 + AluJo SINE Alu 113 298 -14 1708 162 7 34 chrX 3312116 3312413 -159287517 - AluJo SINE Alu -23 289 1 1781 182 0 10 chrX 3312803 3313116 -159286814 - AluJo SINE Alu 0 312 3 1952 143 10 0 chrX 3313736 3314043 -159285887 + AluSx SINE Alu 1 310 -2 1969 177 32 0 chrX 3314076 3314448 -159285482 + L1PB4 LINE L1 5766 6149 -7 734 279 85 33 chrX 3314547 3315121 -159284809 + L1ME3A LINE L1 5331 5957 -213 21 0 0 0 chrX 3315232 3315253 -159284677 + AT_rich Low_complexity Low_complexity 1 21 0 234 207 0 0 chrX 3315325 3315383 -159284547 + GA-rich Low_complexity Low_complexity 1 58 0 238 324 142 14 chrX 3315579 3315727 -159284203 + L2 LINE L2 3130 3296 -17 761 102 0 8 chrX 3317458 3317576 -159282354 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 1988 255 97 16 chrX 3317576 3317726 -159282204 + L1MB5 LINE L1 4169 4306 -1840 2318 74 0 3 chrX 3317726 3318025 -159281905 + AluY SINE Alu 1 298 -13 1988 255 97 16 chrX 3318025 3318732 -159281198 + L1MB5 LINE L1 4306 5095 -1051 1365 120 0 74 chrX 3318732 3318974 -159280956 + AluSx SINE Alu 1 224 -88 294 29 0 0 chrX 3318974 3319009 -159280921 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 578 251 101 45 chrX 3319014 3319593 -159280337 + L1MB5 LINE L1 5092 5720 -446 21 0 0 0 chrX 3319617 3319638 -159280292 + AT_rich Low_complexity Low_complexity 1 21 0 2143 103 6 0 chrX 3320161 3320472 -159279458 + AluSq SINE Alu 1 313 0 26 0 0 0 chrX 3320508 3320534 -159279396 + AT_rich Low_complexity Low_complexity 1 26 0 543 198 21 80 chrX 3320538 3320717 -159279213 + L1MB5 LINE L1 6014 6183 -1 268 326 6 22 chrX 3321378 3321559 -159278371 + (CA)n Simple_repeat Simple_repeat 1 178 0 378 301 3 34 chrX 3321577 3321913 -159278017 + (CA)n Simple_repeat Simple_repeat 1 325 0 426 302 0 12 chrX 3322043 3322212 -159277718 + (CA)n Simple_repeat Simple_repeat 1 167 0 1367 235 62 75 chrX 3322706 3323144 -159276786 - MER67D LTR ERV1 -8 506 75 1431 152 14 48 chrX 3323146 3323346 -159276584 + L1MA4 LINE L1 5847 6035 -265 1542 162 4 11 chrX 3323346 3323612 -159276318 - AluJo SINE Alu -1 311 48 1431 152 14 48 chrX 3323612 3323700 -159276230 + L1MA4 LINE L1 6035 6125 -175 1652 145 8 0 chrX 3323708 3323970 -159275960 - AluJb SINE Alu -1 311 48 4198 33 17 0 chrX 3323970 3324450 -159275480 - LTR2B LTR ERV1 -2 488 1 393 150 20 10 chrX 3324451 3324562 -159275368 - Alu SINE Alu -247 52 2 1923 118 13 54 chrX 3325257 3325572 -159274358 - AluSx SINE Alu -10 302 1 1924 141 3 3 chrX 3325806 3326110 -159273820 + AluSx SINE Alu 1 304 -8 560 101 60 18 chrX 3326426 3326594 -159273336 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 275 218 10 0 chrX 3326633 3326734 -159273196 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 194 274 27 27 chrX 3326948 3327021 -159272909 + L3 LINE CR1 1504 1576 -1 3294 170 43 19 chrX 3327701 3328347 -159271583 + L1PB4 LINE L1 5482 6143 -13 1544 167 11 28 chrX 3328893 3329180 -159270750 + AluJo SINE Alu 7 288 -24 242 114 0 23 chrX 3329183 3329227 -159270703 + (GGA)n Simple_repeat Simple_repeat 1 43 0 1234 253 63 38 chrX 3329500 3329927 -159270003 - MLT1C LTR MaLR -9 458 21 1721 161 0 40 chrX 3330024 3330348 -159269582 + AluJo SINE Alu 1 311 -1 289 240 82 96 chrX 3331136 3331194 -159268736 - MLT1J2 LTR MaLR -2 448 391 2542 55 0 3 chrX 3331194 3331506 -159268424 - AluY SINE Alu 0 311 1 289 240 82 96 chrX 3331506 3331655 -159268275 - MLT1J2 LTR MaLR -59 391 244 1441 140 18 0 chrX 3331705 3331926 -159268004 - MLT1B LTR MaLR -8 382 158 489 176 0 22 chrX 3331926 3332017 -159267913 - MLT1A2 LTR MaLR 0 374 286 562 133 67 14 chrX 3332037 3332322 -159267608 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 4028 176 21 4 chrX 3332323 3333044 -159266886 - L1MB3 LINE L1 -8 6175 5443 1854 140 33 7 chrX 3333258 3333558 -159266372 - AluSx SINE Alu -4 308 1 1326 81 0 51 chrX 3333567 3333711 -159266219 + L1MA1 LINE L1 6116 6249 -53 1871 161 0 0 chrX 3333711 3334010 -159265920 + AluSx SINE Alu 1 299 -13 1326 81 0 51 chrX 3334010 3334062 -159265868 + L1MA1 LINE L1 6249 6302 0 24 0 0 0 chrX 3334062 3334086 -159265844 + AT_rich Low_complexity Low_complexity 1 24 0 430 268 14 49 chrX 3334782 3334924 -159265006 - MLT1C LTR MaLR -1 466 330 1438 137 0 0 chrX 3334924 3335175 -159264755 + AluSg/x SINE Alu 86 336 0 494 198 95 0 chrX 3335356 3335472 -159264458 + MER53 DNA DNA 2 128 -61 1811 144 10 3 chrX 3335481 3335780 -159264150 + AluJb SINE Alu 1 301 -11 31 82 0 0 chrX 3335784 3335857 -159264073 + AT_rich Low_complexity Low_complexity 1 73 0 198 339 51 0 chrX 3336286 3336345 -159263585 + L3 LINE CR1 132 193 -1384 245 270 10 0 chrX 3336447 3336547 -159263383 - HAL1 LINE L1 -124 2383 2283 402 230 17 126 chrX 3336567 3336609 -159263321 + MER87 LTR ERV1 1 46 -495 2055 117 10 7 chrX 3336609 3336917 -159263013 + AluSq SINE Alu 1 309 -4 402 230 17 126 chrX 3336917 3337048 -159262882 + MER87 LTR ERV1 46 149 -392 1630 146 0 8 chrX 3337064 3337354 -159262576 + AluJb SINE Alu 30 317 0 183 42 0 0 chrX 3337380 3337404 -159262526 + (GA)n Simple_repeat Simple_repeat 2 25 0 939 245 89 65 chrX 3337528 3338017 -159261913 + LTR8A LTR ERV1 116 727 0 566 276 100 69 chrX 3338029 3338219 -159261711 - HAL1 LINE L1 -273 2234 2051 896 149 37 50 chrX 3338219 3338380 -159261550 - FRAM SINE Alu -7 159 1 566 276 100 69 chrX 3338380 3338728 -159261202 - HAL1 LINE L1 -456 2051 1679 2628 102 9 80 chrX 3338728 3339178 -159260752 - MER4E LTR ERV1 0 766 349 21 0 0 0 chrX 3339531 3339552 -159260378 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 3339671 3339692 -159260238 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 3339841 3339863 -159260067 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 3340053 3340074 -159259856 + GC_rich Low_complexity Low_complexity 1 21 0 303 122 0 0 chrX 3341142 3341191 -159258739 + (TC)n Simple_repeat Simple_repeat 2 50 0 2471 91 8 36 chrX 3341212 3341277 -159258653 - THE1A LTR MaLR 0 355 290 2120 104 0 3 chrX 3341277 3341574 -159258356 - AluSx SINE Alu -16 296 1 2471 91 8 36 chrX 3341574 3341871 -159258059 - THE1A LTR MaLR -65 290 3 10845 101 43 2 chrX 3341873 3343391 -159256539 - THE1A-int LTR MaLR 0 1580 1 2392 120 11 0 chrX 3343391 3343742 -159256188 - THE1A LTR MaLR 0 355 1 245 186 0 0 chrX 3343930 3343973 -159255957 - Alu SINE Alu -259 44 2 405 151 0 0 chrX 3344497 3344570 -159255360 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 527 107 0 0 chrX 3344911 3344986 -159254944 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 219 300 80 10 chrX 3345427 3345527 -159254403 - L2 LINE L2 -4 3309 3203 1773 143 0 53 chrX 3346294 3346615 -159253315 + AluJb SINE Alu 1 304 -8 183 194 0 0 chrX 3346861 3346892 -159253038 + L2 LINE L2 3231 3261 -11 282 283 43 58 chrX 3347280 3347418 -159252512 + MER5A DNA MER1_type 49 184 -5 243 146 21 0 chrX 3347510 3347558 -159252372 - L2 LINE L2 -205 3067 3019 207 167 0 0 chrX 3348548 3348584 -159251346 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 202 155 87 41 chrX 3348898 3348947 -159250983 + MIR SINE MIR 68 119 -89 191 288 0 15 chrX 3348986 3349052 -159250878 - L2 LINE L2 -13 3259 3195 242 339 37 18 chrX 3349506 3349615 -159250315 - L2 LINE L2 -208 3064 2954 182 299 93 10 chrX 3349979 3350076 -159249854 - MER5A DNA MER1_type -11 178 74 1050 173 31 126 chrX 3350323 3350501 -159249429 - AluJo SINE Alu -8 304 168 1687 146 7 0 chrX 3350501 3350775 -159249155 + AluSx SINE Alu 1 276 -36 1050 173 31 126 chrX 3350775 3350914 -159249016 - AluJo SINE Alu -144 168 17 616 196 227 6 chrX 3351246 3351409 -159248521 + MER20 DNA MER1_type 2 200 -19 283 211 0 211 chrX 3351474 3351607 -159248323 + L2 LINE L2 3202 3306 -7 345 266 49 28 chrX 3351636 3351779 -159248151 - L1MC/D LINE L1 -2080 5728 5583 2156 124 0 0 chrX 3351811 3352117 -159247813 + AluSx SINE Alu 1 306 -6 229 264 144 16 chrX 3352128 3352253 -159247677 + L1ME3A LINE L1 5632 5772 -390 313 265 42 78 chrX 3352260 3352426 -159247504 + L1ME3A LINE L1 5809 5968 -202 378 211 12 170 chrX 3352698 3352761 -159247169 - MER112 DNA MER1_type -45 215 144 2108 105 7 0 chrX 3352761 3353057 -159246873 + AluSx SINE Alu 7 304 -8 378 211 12 170 chrX 3353057 3353201 -159246729 - MER112 DNA MER1_type -116 144 -21 2007 104 30 7 chrX 3353201 3353498 -159246432 - AluSx SINE Alu -8 304 1 2198 94 0 0 chrX 3353499 3353796 -159246134 - AluSx SINE Alu -15 297 1 378 211 12 170 chrX 3353796 3353832 -159246098 - MER112 DNA MER1_type -212 48 8 1606 145 100 35 chrX 3354883 3355111 -159244819 - MSTA LTR MaLR -1 427 172 2395 62 3 0 chrX 3355111 3355415 -159244515 - AluY SINE Alu -5 306 2 1606 145 100 35 chrX 3355415 3355496 -159244434 - MSTA LTR MaLR -256 172 98 2698 161 30 79 chrX 3355942 3356550 -159243380 - L1MB3 LINE L1 -4 6179 5602 1839 174 28 75 chrX 3356527 3356620 -159243310 - L1MB3 LINE L1 -1755 4391 4295 * 1849 125 49 7 chrX 3356620 3356907 -159243023 - AluSx SINE Alu -13 299 1 1839 174 28 75 chrX 3356907 3356955 -159242975 - L1MB3 LINE L1 -1851 4295 4246 1745 113 0 96 chrX 3356955 3357290 -159242640 - AluSx SINE Alu -9 303 1 1839 174 28 75 chrX 3357290 3357682 -159242248 - L1MB3 LINE L1 -1900 4246 3882 1676 155 50 4 chrX 3358337 3358615 -159241315 + AluSx SINE Alu 1 291 -21 2114 90 0 20 chrX 3358721 3359021 -159240909 + AluY SINE Alu 1 294 -17 806 261 0 0 chrX 3359139 3359304 -159240626 - AluJb SINE Alu -11 301 137 2046 104 3 14 chrX 3359437 3359734 -159240196 - AluSx SINE Alu -18 294 1 358 317 6 19 chrX 3359902 3360227 -159239703 + (CA)n Simple_repeat Simple_repeat 1 320 0 367 296 0 28 chrX 3360479 3360655 -159239275 + (CA)n Simple_repeat Simple_repeat 1 171 0 1559 219 58 96 chrX 3361128 3361577 -159238353 - MER67D LTR ERV1 0 514 87 2094 178 13 31 chrX 3361577 3361777 -159238153 + L1MA4 LINE L1 5847 6049 -251 1665 144 4 0 chrX 3361777 3362040 -159237890 - AluJo SINE Alu -1 311 48 2094 178 13 31 chrX 3362040 3362294 -159237636 + L1MA4 LINE L1 6049 6293 -7 1559 219 58 96 chrX 3362294 3362378 -159237552 - MER67D LTR ERV1 -427 87 1 2372 109 34 14 chrX 3362418 3362775 -159237155 + THE1B LTR MaLR 1 364 0 462 137 0 0 chrX 3362826 3362899 -159237031 - AluJo SINE Alu -6 306 234 1094 160 48 0 chrX 3363282 3363469 -159236461 - AluJo SINE Alu -69 243 48 2029 117 7 23 chrX 3363696 3364005 -159235925 - AluSx SINE Alu -8 304 1 1743 127 67 11 chrX 3364230 3364514 -159235416 + AluSx SINE Alu 3 302 -10 315 128 51 26 chrX 3364761 3364878 -159235052 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 3158 169 50 13 chrX 3364909 3365531 -159234399 + L1PB4 LINE L1 5499 6143 -13 1323 201 18 25 chrX 3366073 3366357 -159233573 + AluJo SINE Alu 7 288 -24 273 235 25 12 chrX 3366648 3366729 -159233201 - MLT1C LTR MaLR -4 463 382 2390 57 0 0 chrX 3367566 3367864 -159232066 - AluY SINE Alu -13 298 1 692 92 20 0 chrX 3368698 3368796 -159231134 + FLAM_C SINE Alu 23 122 -21 2298 81 3 0 chrX 3368804 3369111 -159230819 - AluSx SINE Alu -4 308 1 1478 194 7 0 chrX 3369131 3369415 -159230515 + AluJo SINE Alu 3 288 -24 757 71 50 0 chrX 3370019 3370118 -159229812 - AluSq/x SINE Alu -204 108 5 1339 158 41 15 chrX 3370134 3370400 -159229530 + L1MA8 LINE L1 6017 6289 -2 2207 109 0 0 chrX 3370410 3370712 -159229218 + AluSx SINE Alu 1 302 -10 1582 138 30 0 chrX 3370742 3371011 -159228919 - L1MA5A LINE L1 0 6297 6021 1717 147 97 27 chrX 3371349 3371632 -159228298 + MLT1A1 LTR MaLR 1 314 -51 1576 83 12 51 chrX 3371632 3371885 -159228045 + MER75B DNA T2_type 1 243 0 1717 147 97 27 chrX 3371885 3371941 -159227989 + MLT1A1 LTR MaLR 314 365 0 1072 151 0 0 chrX 3372062 3372234 -159227696 - AluSq SINE Alu 0 313 142 1051 184 71 21 chrX 3372393 3372632 -159227298 - AluJb SINE Alu -59 253 3 1321 172 78 54 chrX 3372806 3373102 -159226828 - AluJo SINE Alu -9 303 1 1215 176 9 0 chrX 3373197 3373407 -159226523 - L1PA16 LINE L1 -9 6157 5946 204 209 0 47 chrX 3374178 3374264 -159225666 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 * 221 134 60 45 chrX 3374204 3374271 -159225659 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 3685 131 23 29 chrX 3374440 3374517 -159225413 - L1PA16 LINE L1 -24 6142 6066 2001 186 41 117 chrX 3374517 3375177 -159224753 - LTR9 LTR ERV1 0 612 3 3685 131 23 29 chrX 3375177 3375417 -159224513 - L1PA16 LINE L1 -100 6066 5166 609 279 59 50 chrX 3375417 3375692 -159224238 - L1MD3 LINE L1 -2169 5826 5546 2625 74 148 3 chrX 3375692 3376083 -159223847 + LTR7 LTR ERV1 1 448 -2 609 279 59 50 chrX 3376083 3376165 -159223765 - L1MD3 LINE L1 -2449 5546 5466 549 61 0 49 chrX 3376471 3376522 -159223408 - MADE1 DNA Mariner -1 79 27 1799 153 0 0 chrX 3376522 3376803 -159223127 + AluSx SINE Alu 1 281 -31 243 0 0 0 chrX 3376804 3376831 -159223099 + (CA)n Simple_repeat Simple_repeat 2 28 0 549 61 0 49 chrX 3376831 3376859 -159223071 - MADE1 DNA Mariner -52 28 2 374 120 0 0 chrX 3377836 3377886 -159222044 + Alu SINE Alu 1 50 -249 352 120 0 0 chrX 3377921 3377971 -159221959 + Alu SINE Alu 1 50 -250 1617 99 0 5 chrX 3378006 3378229 -159221701 + AluSq SINE Alu 1 222 -91 218 146 42 0 chrX 3378243 3378291 -159221639 + G-rich Low_complexity Low_complexity 2 51 0 600 159 28 9 chrX 3378500 3378607 -159221323 + L1MB3 LINE L1 6065 6173 -10 697 136 36 0 chrX 3378610 3378720 -159221210 - FLAM_C SINE Alu -18 125 12 1337 163 96 4 chrX 3379777 3380028 -159219902 - AluJo SINE Alu -30 282 9 237 214 0 18 chrX 3380031 3380087 -159219843 - AluJb SINE Alu -162 140 86 1285 178 5 0 chrX 3380087 3380306 -159219624 - AluJo SINE Alu -92 220 1 2071 112 20 0 chrX 3380414 3380719 -159219211 - AluSx SINE Alu -1 311 1 2117 109 0 22 chrX 3380727 3381040 -159218890 - AluSx SINE Alu -6 306 1 969 129 0 0 chrX 3381040 3381180 -159218750 - AluJo SINE Alu -171 141 2 675 200 21 28 chrX 3381223 3381368 -159218562 - MLT1C LTR MaLR -8 459 316 741 203 98 87 chrX 3381626 3381912 -159218018 - MLT1C LTR MaLR -134 333 45 653 182 108 140 chrX 3381921 3382256 -159217674 - MLT1C LTR MaLR -143 324 1 342 309 63 37 chrX 3382354 3382545 -159217385 - MIR SINE MIR 0 262 67 2193 229 7 37 chrX 3382547 3382984 -159216946 + L1MB7 LINE L1 5630 6048 -136 2113 105 10 0 chrX 3382984 3383290 -159216640 + AluSx SINE Alu 1 309 -3 2193 229 7 37 chrX 3383290 3383415 -159216515 + L1MB7 LINE L1 6048 6175 -9 3225 135 4 4 chrX 3383428 3383947 -159215983 + L1PA16 LINE L1 5647 6165 -1 24 32 0 0 chrX 3383947 3383978 -159215952 + AT_rich Low_complexity Low_complexity 1 31 0 1934 160 0 0 chrX 3383985 3384292 -159215638 + AluSx SINE Alu 1 307 -5 270 204 0 56 chrX 3384292 3384338 -159215592 + AluSg/x SINE Alu 135 179 -123 * 330 54 0 0 chrX 3384336 3384438 -159215492 + Alu SINE Alu 234 325 0 1801 216 49 28 chrX 3384924 3385318 -159214612 + L1MB5 LINE L1 5728 6133 -41 2143 125 0 0 chrX 3385318 3385629 -159214301 + AluSx SINE Alu 2 312 0 1801 216 49 28 chrX 3385629 3385664 -159214266 + L1MB5 LINE L1 6133 6166 -8 1366 212 7 0 chrX 3385743 3386031 -159213899 + AluJo SINE Alu 1 290 -22 1230 109 6 0 chrX 3386133 3386307 -159213623 - AluSg/x SINE Alu -16 296 122 1455 186 4 8 chrX 3386413 3386677 -159213253 - AluJo SINE Alu -45 267 5 736 217 63 10 chrX 3386831 3387026 -159212904 + MLT1B LTR MaLR 1 197 -177 902 186 50 25 chrX 3387026 3387225 -159212705 - L1MB1 LINE L1 -12 6156 5953 767 214 0 0 chrX 3387263 3387403 -159212527 + MLT1B LTR MaLR 193 332 -58 1981 121 175 22 chrX 3387491 3387862 -159212068 - MSTA LTR MaLR 0 428 1 2681 184 29 6 chrX 3388184 3388700 -159211230 + L1MB1 LINE L1 5586 6113 -76 2480 94 9 0 chrX 3388700 3389038 -159210892 + L1PB1 LINE L1 5800 6144 -7 377 174 43 0 chrX 3389059 3389128 -159210802 + L1MB1 LINE L1 6092 6163 -5 22 0 0 0 chrX 3389450 3389472 -159210458 + AT_rich Low_complexity Low_complexity 1 22 0 213 132 0 0 chrX 3389954 3389992 -159209938 + (TCC)n Simple_repeat Simple_repeat 3 40 0 255 86 17 35 chrX 3390199 3390257 -159209673 + (TCC)n Simple_repeat Simple_repeat 1 57 0 615 206 12 8 chrX 3390278 3390515 -159209415 + CT-rich Low_complexity Low_complexity 1 237 0 1230 203 31 157 chrX 3390739 3390789 -159209141 + L1MB5 LINE L1 5613 5668 -506 1783 114 96 7 chrX 3390789 3391069 -159208861 + AluSx SINE Alu 1 305 -7 708 170 0 30 chrX 3391079 3391214 -159208716 + FLAM_C SINE Alu 1 131 -2 1230 203 31 157 chrX 3391214 3391274 -159208656 + L1MB5 LINE L1 5678 5744 -430 1784 158 10 0 chrX 3391274 3391577 -159208353 + AluJb SINE Alu 1 306 -6 1230 203 31 157 chrX 3391577 3391942 -159207988 + L1MB5 LINE L1 5744 6004 -170 2284 94 0 0 chrX 3391942 3392241 -159207689 + AluSx SINE Alu 6 304 -8 1230 203 31 157 chrX 3392241 3392391 -159207539 + L1MB5 LINE L1 6004 6171 -3 4414 135 12 25 chrX 3392860 3393580 -159206350 - MER50 LTR ERV1 -23 711 1 2496 73 0 0 chrX 3393584 3393898 -159206032 + MER41A LTR ERV1 1 314 -240 282 116 0 0 chrX 3394343 3394386 -159205544 + (T)n Simple_repeat Simple_repeat 1 43 0 712 216 9 0 chrX 3395026 3395174 -159204756 + L1MB2 LINE L1 5772 5930 -232 2284 122 20 58 chrX 3395176 3395328 -159204602 - LTR56 LTR ERV1 0 445 289 966 154 0 0 chrX 3395328 3395477 -159204453 - FRAM SINE Alu -17 149 1 2284 122 20 58 chrX 3395477 3395796 -159204134 - LTR56 LTR ERV1 -156 289 9 285 247 27 0 chrX 3395802 3395885 -159204045 + L1MB2 LINE L1 5928 6012 -167 1655 168 7 3 chrX 3395964 3396255 -159203675 + AluJb SINE Alu 21 312 0 1337 140 5 10 chrX 3396288 3396495 -159203435 + THE1B LTR MaLR 159 364 0 4130 134 11 11 chrX 3396590 3397031 -159202899 + MER41B LTR ERV1 1 444 -191 1963 173 16 16 chrX 3397031 3397406 -159202524 - THE1C LTR MaLR 0 375 1 4130 134 11 11 chrX 3397406 3397599 -159202331 + MER41B LTR ERV1 443 635 0 469 160 21 0 chrX 3398112 3398206 -159201724 + LTR26 LTR ERV1 1 96 -507 799 282 7 22 chrX 3398466 3398583 -159201347 + L1MD2 LINE L1 6077 6194 -165 1997 134 44 49 chrX 3398583 3398949 -159200981 + THE1B LTR MaLR 1 364 0 799 282 7 22 chrX 3398949 3399108 -159200822 + L1MD2 LINE L1 6194 6349 -10 3008 201 36 30 chrX 3399374 3400016 -159199914 + MER82 DNA MER2_type 7 652 -1 290 317 99 32 chrX 3400023 3400431 -159199499 + MLT1E LTR MaLR 20 499 -96 640 191 95 0 chrX 3401856 3401982 -159197948 - MLT1E1 LTR MaLR -110 544 407 1927 178 31 3 chrX 3402345 3402700 -159197230 - MLT1A1 LTR MaLR 0 365 1 2185 231 77 58 chrX 3403007 3403471 -159196459 - MLT1E1 LTR MaLR 0 654 173 1979 87 53 20 chrX 3403471 3403771 -159196159 - AluSq SINE Alu -1 312 3 2185 231 77 58 chrX 3403771 3403942 -159195988 - MLT1E1 LTR MaLR -481 173 7 3580 156 114 36 chrX 3403942 3404690 -159195240 - L1PA16 LINE L1 -18 6148 5343 2064 98 11 0 chrX 3404696 3405007 -159194923 + AluSx SINE Alu 1 314 0 958 144 0 54 chrX 3405007 3405221 -159194709 + AluSg/x SINE Alu 122 326 0 2347 74 3 3 chrX 3406133 3406442 -159193488 - AluSx SINE Alu -3 309 1 3437 92 54 75 chrX 3406500 3406718 -159193212 + L1PA16 LINE L1 5569 5790 -376 2271 89 20 3 chrX 3406718 3407022 -159192908 + AluSg SINE Alu 1 309 -1 3437 92 54 75 chrX 3407022 3407412 -159192518 + L1PA16 LINE L1 5790 6164 -2 2661 55 0 0 chrX 3407427 3407738 -159192192 + AluY SINE Alu 1 311 0 504 295 77 30 chrX 3407784 3408018 -159191912 + MLT1J LTR MaLR 266 510 -1 2367 178 17 5 chrX 3408669 3409091 -159190839 + MSTB1 LTR MaLR 6 432 0 1684 113 20 24 chrX 3409314 3409561 -159190369 + AluJo SINE Alu 50 295 -17 2485 81 0 0 chrX 3410005 3410300 -159189630 + AluSq SINE Alu 3 297 -16 1040 190 44 0 chrX 3410576 3410802 -159189128 + L1MB5 LINE L1 5939 6174 0 4013 110 2 2 chrX 3411094 3411648 -159188282 + MER41A LTR ERV1 1 554 0 1787 205 9 36 chrX 3411813 3412223 -159187707 + L1MC2 LINE L1 5937 6337 -7 1955 117 11 65 chrX 3412223 3412574 -159187356 + L1PB2 LINE L1 5817 6148 -3 2098 104 0 24 chrX 3412731 3413018 -159186912 + AluSx SINE Alu 1 280 -32 258 32 0 0 chrX 3413020 3413051 -159186879 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 225 94 0 0 chrX 3413086 3413118 -159186812 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1438 126 44 139 chrX 3413119 3413254 -159186676 + AluJo SINE Alu 1 90 -222 2256 112 3 3 chrX 3413254 3413558 -159186372 + AluSg SINE Alu 1 304 -6 1438 126 44 139 chrX 3413558 3413739 -159186191 + AluJo SINE Alu 90 287 -25 2300 112 0 0 chrX 3414236 3414532 -159185398 - AluSx SINE Alu -16 296 1 906 125 0 8 chrX 3414558 3414686 -159185244 + FLAM_C SINE Alu 1 127 -16 899 239 126 60 chrX 3415386 3415570 -159184360 + L1ME3A LINE L1 5145 5315 -855 2266 117 0 0 chrX 3415570 3415870 -159184060 + AluSx SINE Alu 1 300 -12 899 239 126 60 chrX 3415870 3415881 -159184049 + L1ME3A LINE L1 5315 5324 -846 2080 142 7 3 chrX 3415881 3416190 -159183740 + AluSx SINE Alu 1 310 -2 899 239 126 60 chrX 3416190 3416647 -159183283 + L1ME3A LINE L1 5324 5858 -312 * 1990 217 41 29 chrX 3416260 3416748 -159183182 + L1MA3 LINE L1 5477 5970 -335 * 3970 126 35 0 chrX 3416315 3416919 -159183011 + L1PA16 LINE L1 5522 6146 -20 849 192 18 0 chrX 3416928 3417095 -159182835 + L1MB3 LINE L1 5428 5597 -577 406 143 16 0 chrX 3417095 3417158 -159182772 + Charlie1 DNA MER1_type 2697 2760 -1 856 222 6 6 chrX 3417539 3417719 -159182211 + MER58A DNA MER1_type 45 224 0 2201 193 30 17 chrX 3417926 3418388 -159181542 + MER89 LTR ERV1 1 468 -91 519 186 28 11 chrX 3418452 3418629 -159181301 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 682 166 29 0 chrX 3418689 3418864 -159181066 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 307 208 42 0 chrX 3418878 3418998 -159180932 + (TGGA)n Simple_repeat Simple_repeat 3 127 0 615 153 5 53 chrX 3419017 3419206 -159180724 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 397 218 11 0 chrX 3419218 3419305 -159180625 + MER89 LTR ERV1 472 559 0 23 54 0 0 chrX 3420158 3420195 -159179735 + AT_rich Low_complexity Low_complexity 1 37 0 1660 196 3 20 chrX 3420431 3420732 -159179198 - AluJo SINE Alu -16 296 1 581 174 22 28 chrX 3421525 3421852 -159178078 + (TCCA)n Simple_repeat Simple_repeat 1 325 0 2837 202 50 5 chrX 3422046 3422631 -159177299 + L1MB3 LINE L1 5566 6176 -7 491 225 0 5 chrX 3423086 3423308 -159176622 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 253 215 25 33 chrX 3423282 3423403 -159176527 + (TGAA)n Simple_repeat Simple_repeat 4 123 0 * 478 242 6 6 chrX 3423437 3423615 -159176315 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 625 217 7 0 chrX 3423630 3423908 -159176022 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 801 170 0 11 chrX 3423933 3424305 -159175625 + (TGGA)n Simple_repeat Simple_repeat 1 367 0 312 352 0 0 chrX 3424306 3424397 -159175533 + (TGGG)n Simple_repeat Simple_repeat 1 91 0 705 208 0 0 chrX 3424398 3424566 -159175364 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 471 202 0 0 chrX 3424578 3424692 -159175238 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 192 77 0 0 chrX 3424702 3424728 -159175202 + (TG)n Simple_repeat Simple_repeat 1 26 0 2719 45 0 0 chrX 3425443 3425754 -159174176 - AluY SINE Alu 0 311 1 685 58 8 91 chrX 3425756 3425877 -159174053 + LTR36 LTR ERV1 11 121 -490 2279 79 3 0 chrX 3425878 3426169 -159173761 + AluY SINE Alu 1 292 -19 1169 127 12 0 chrX 3426169 3426335 -159173595 + LTR36 LTR ERV1 444 611 0 2242 116 0 3 chrX 3426567 3426868 -159173062 + AluSx SINE Alu 1 300 -12 2154 119 16 0 chrX 3426894 3427197 -159172733 + AluSx SINE Alu 1 308 -4 1834 198 98 30 chrX 3427671 3427796 -159172134 - MLT1D LTR MaLR -2 503 388 1730 170 3 7 chrX 3427796 3428079 -159171851 + AluJo SINE Alu 1 282 -30 1834 198 98 30 chrX 3428079 3428424 -159171506 - MLT1D LTR MaLR -117 388 1 484 168 11 0 chrX 3428572 3428667 -159171263 - L1PA11 LINE L1 0 6174 6079 444 164 0 0 chrX 3428667 3428740 -159171190 - L1P4 LINE L1 -680 5488 5416 * 4556 127 13 1 chrX 3428716 3429392 -159170538 - L1PA11 LINE L1 -81 6093 5410 1157 171 9 28 chrX 3429680 3429891 -159170039 + AluJo SINE Alu 87 293 -19 1116 124 74 109 chrX 3429904 3430187 -159169743 + L1MA8 LINE L1 6019 6291 0 207 281 0 0 chrX 3430209 3430273 -159169657 + A-rich Low_complexity Low_complexity 1 64 0 2314 102 0 0 chrX 3430273 3430566 -159169364 + AluSx SINE Alu 1 293 -19 674 186 0 0 chrX 3430652 3430765 -159169165 + FLAM_A SINE Alu 25 137 -5 2172 133 0 0 chrX 3430789 3431090 -159168840 - AluSx SINE Alu -11 301 1 605 173 27 0 chrX 3431219 3431328 -159168602 - MLT1D LTR MaLR -6 499 388 2085 145 117 25 chrX 3431328 3431691 -159168239 - MSTA LTR MaLR 0 428 25 2746 89 14 3 chrX 3431691 3432060 -159167870 + THE1C LTR MaLR 3 375 0 2085 145 117 25 chrX 3432060 3432088 -159167842 - MSTA LTR MaLR -403 25 1 1831 220 32 3 chrX 3432088 3432465 -159167465 - MLT1D LTR MaLR -113 392 5 964 162 52 0 chrX 3432797 3432951 -159166979 - AluJo SINE Alu -30 282 121 52 0 0 0 chrX 3432983 3433035 -159166895 + AT_rich Low_complexity Low_complexity 1 52 0 4479 148 3 1 chrX 3433047 3433744 -159166186 + L1PA15 LINE L1 5467 6164 -1 2123 86 61 0 chrX 3433749 3434028 -159165902 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 3434048 3434071 -159165859 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1413 206 11 11 chrX 3434073 3434355 -159165575 - AluJo SINE Alu -30 282 1 401 322 117 23 chrX 3434473 3434623 -159165307 - HAL1 LINE L1 -145 2362 2227 321 26 0 0 chrX 3434623 3434661 -159165269 + (CA)n Simple_repeat Simple_repeat 1 38 0 401 322 117 23 chrX 3434661 3435025 -159164905 - HAL1 LINE L1 -280 2227 1800 192 279 0 51 chrX 3435046 3435125 -159164805 + MIR SINE MIR 82 156 -106 376 236 115 115 chrX 3435206 3435545 -159164385 - HAL1 LINE L1 -698 1809 1471 2384 96 0 0 chrX 3435559 3435860 -159164070 - AluSx SINE Alu -11 301 1 433 208 3 44 chrX 3435868 3436172 -159163758 + CT-rich Low_complexity Low_complexity 1 291 0 1794 159 7 17 chrX 3436323 3436625 -159163305 + AluJb SINE Alu 1 299 -13 273 29 0 0 chrX 3436989 3437023 -159162907 + (TG)n Simple_repeat Simple_repeat 1 34 0 1935 140 25 3 chrX 3437110 3437431 -159162499 + MLT1A1 LTR MaLR 1 328 -37 257 221 13 39 chrX 3437815 3437892 -159162038 + L1M3 LINE L1 5633 5707 -473 1791 185 7 7 chrX 3437952 3438249 -159161681 - AluJb SINE Alu -15 297 1 2124 117 0 0 chrX 3438261 3438566 -159161364 - AluSx SINE Alu 0 305 1 1610 96 9 0 chrX 3438572 3438802 -159161128 - L1PA14 LINE L1 -2 6159 5928 303 49 0 0 chrX 3439155 3439196 -159160734 + (TA)n Simple_repeat Simple_repeat 1 41 0 258 111 0 0 chrX 3439196 3439236 -159160694 + (GA)n Simple_repeat Simple_repeat 1 40 0 1674 96 23 0 chrX 3439425 3439645 -159160285 - AluSg/x SINE Alu -4 308 84 1719 185 3 3 chrX 3439655 3439958 -159159972 - AluJo SINE Alu -9 303 1 1810 166 13 17 chrX 3440060 3440361 -159159569 + AluJo SINE Alu 1 300 -12 189 0 0 0 chrX 3440530 3440551 -159159379 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 979 192 6 0 chrX 3440979 3441161 -159158769 - AluJo SINE Alu -7 305 123 249 177 32 32 chrX 3441198 3441242 -159158688 - L1M LINE L1 -2398 5410 5364 1948 115 21 10 chrX 3441242 3441530 -159158400 - AluSx SINE Alu -21 291 1 249 177 32 32 chrX 3441530 3441547 -159158383 - L1M LINE L1 -2443 5365 5349 554 67 0 0 chrX 3441590 3441665 -159158265 - L1PA5 LINE L1 0 6154 6080 4389 141 53 87 chrX 3441665 3442140 -159157790 - L1MC1 LINE L1 -2 6331 5841 1948 153 40 0 chrX 3442140 3442440 -159157490 - AluJo SINE Alu 0 312 1 4389 141 53 87 chrX 3442440 3442501 -159157429 - L1MC1 LINE L1 -492 5841 5779 2437 93 0 0 chrX 3442501 3442803 -159157127 - AluSg SINE Alu -8 302 1 2319 100 3 3 chrX 3442805 3443116 -159156814 - AluSx SINE Alu -1 311 1 4389 141 53 87 chrX 3443116 3443526 -159156404 - L1MC1 LINE L1 -555 5778 5414 523 277 128 36 chrX 3443529 3443727 -159156203 - L1ME3A LINE L1 -224 5946 5768 2227 141 30 22 chrX 3443727 3444088 -159155842 + THE1B LTR MaLR 1 364 0 523 277 128 36 chrX 3444088 3444438 -159155492 - L1ME3A LINE L1 -402 5768 5337 2093 139 3 0 chrX 3444454 3444748 -159155182 - AluJo SINE Alu -13 299 5 336 304 172 25 chrX 3444750 3445465 -159154465 - L1ME3A LINE L1 -2064 4082 3247 1471 116 9 9 chrX 3445465 3445681 -159154249 - AluSq SINE Alu -16 297 82 336 304 172 25 chrX 3445681 3445726 -159154204 - L1ME3A LINE L1 -2899 3247 3210 43 108 0 0 chrX 3445732 3445908 -159154022 + AT_rich Low_complexity Low_complexity 1 176 0 919 231 30 0 chrX 3446961 3447160 -159152770 + MER2 DNA MER2_type 1 205 -140 1139 161 9 28 chrX 3447162 3447373 -159152557 - AluJo SINE Alu -10 302 96 * 1299 131 0 53 chrX 3447371 3447577 -159152353 - AluSx SINE Alu -117 195 1 1057 128 0 0 chrX 3447876 3448024 -159151906 + FRAM SINE Alu 11 158 -18 672 194 7 28 chrX 3448276 3448420 -159151510 - MLT1C LTR MaLR 0 467 327 4363 153 33 30 chrX 3448420 3448540 -159151390 - LTR39 LTR ERV1 -28 755 637 1942 169 0 0 chrX 3448540 3448848 -159151082 + AluJb SINE Alu 1 308 -4 2307 62 0 36 chrX 3448848 3449152 -159150778 + AluY SINE Alu 1 293 -18 4363 153 33 30 chrX 3449152 3449783 -159150147 - LTR39 LTR ERV1 -145 638 1 3133 100 27 11 chrX 3449784 3450098 -159149832 + MER41B LTR ERV1 1 326 -309 1710 168 58 9 chrX 3450098 3450425 -159149505 + MER61A LTR ERV1 1 343 0 3133 100 27 11 chrX 3450425 3450559 -159149371 + MER41B LTR ERV1 326 456 -179 868 139 0 29 chrX 3450562 3450699 -159149231 + AluSg/x SINE Alu 163 295 -15 2298 103 0 0 chrX 3450721 3451013 -159148917 + AluSx SINE Alu 2 293 -19 729 219 2 26 chrX 3451160 3451288 -159148642 - L1MB2 LINE L1 -212 5956 5835 2243 98 10 7 chrX 3451288 3451593 -159148337 - AluSq SINE Alu -7 306 1 729 219 2 26 chrX 3451593 3451674 -159148256 - L1MB2 LINE L1 -333 5835 5754 612 220 22 78 chrX 3451733 3451965 -159147965 + MER20 DNA MER1_type 1 219 0 1985 125 14 3 chrX 3452172 3452461 -159147469 - AluSx SINE Alu -20 292 1 231 170 0 0 chrX 3452569 3452616 -159147314 + L1MC4 LINE L1 6659 6705 -1337 2400 86 3 3 chrX 3452791 3453095 -159146835 + AluSx SINE Alu 1 304 -8 2266 107 0 0 chrX 3453214 3453505 -159146425 - AluSx SINE Alu -21 291 1 1311 223 64 21 chrX 3453599 3453733 -159146197 + AluJo SINE Alu 1 128 -184 185 0 40 0 chrX 3453733 3453758 -159146172 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1311 223 64 21 chrX 3453758 3453905 -159146025 + AluJo SINE Alu 128 294 -18 1487 211 43 0 chrX 3455261 3455560 -159144370 - AluJo SINE Alu 0 312 1 2169 98 0 0 chrX 3455744 3456018 -159143912 + AluSx SINE Alu 1 274 -38 2434 76 3 17 chrX 3456020 3456322 -159143608 - AluSq SINE Alu -15 298 1 1378 144 5 5 chrX 3456324 3456532 -159143398 + AluJb SINE Alu 102 309 -3 2286 88 0 14 chrX 3456802 3457099 -159142831 - AluSc SINE Alu -16 293 1 30 0 0 0 chrX 3457110 3457140 -159142790 + AT_rich Low_complexity Low_complexity 1 30 0 866 122 0 29 chrX 3457142 3457281 -159142649 - L1MA2 LINE L1 0 6304 6170 1598 199 0 0 chrX 3457300 3457566 -159142364 - AluJo SINE Alu -24 288 23 2445 104 0 0 chrX 3458048 3458357 -159141573 - AluSx SINE Alu -3 309 1 886 156 0 21 chrX 3458448 3458589 -159141341 + FLAM_C SINE Alu 1 138 -5 2586 54 0 0 chrX 3458656 3458953 -159140977 + AluY SINE Alu 1 297 -14 2118 110 0 4 chrX 3459101 3459415 -159140515 + AluSg SINE Alu 1 313 0 195 42 0 0 chrX 3460267 3460291 -159139639 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1801 184 0 7 chrX 3460313 3460612 -159139318 + AluJo SINE Alu 1 297 -15 330 87 0 0 chrX 3460886 3460932 -159138998 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1793 178 10 24 chrX 3460932 3461230 -159138700 - AluJo SINE Alu -18 294 1 1536 165 3 93 chrX 3461715 3462048 -159137882 + AluJo SINE Alu 1 303 -9 1374 144 137 46 chrX 3462258 3462521 -159137409 - AluJo SINE Alu -17 295 9 183 100 0 0 chrX 3463274 3463304 -159136626 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2430 85 0 0 chrX 3463307 3463626 -159136304 - L1PA13 LINE L1 -19 6144 5826 198 0 0 0 chrX 3463626 3463648 -159136282 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1164 196 36 5 chrX 3463648 3463868 -159136062 - AluJo SINE Alu -28 284 58 2394 89 0 3 chrX 3463877 3464179 -159135751 - AluY SINE Alu -10 301 1 1923 117 3 57 chrX 3464215 3464543 -159135387 - AluSq SINE Alu 0 316 5 215 163 0 20 chrX 3465324 3465373 -159134557 + T-rich Low_complexity Low_complexity 2 49 0 305 314 0 59 chrX 3465915 3466017 -159133913 + L1MC4 LINE L1 6614 6709 -1333 * 324 252 37 30 chrX 3465938 3466053 -159133877 - L1MCa LINE L1 -1337 6985 1973 234 154 66 22 chrX 3466091 3466182 -159133748 + (TA)n Simple_repeat Simple_repeat 1 95 0 1383 72 0 0 chrX 3466191 3466357 -159133573 + AluSg SINE Alu 1 166 -144 682 158 9 11 chrX 3466373 3466534 -159133396 + L1PB4 LINE L1 5782 5901 -255 25 102 0 0 chrX 3466534 3466622 -159133308 + AT_rich Low_complexity Low_complexity 1 88 0 316 194 0 82 chrX 3466625 3466723 -159133207 - L1MC4 LINE L1 -1339 6703 6614 183 129 0 0 chrX 3466723 3466754 -159133176 + (CA)n Simple_repeat Simple_repeat 2 32 0 1265 163 112 47 chrX 3466800 3467076 -159132854 - AluJb SINE Alu -8 294 1 281 229 33 57 chrX 3468300 3468422 -159131508 + MER53 DNA DNA 37 155 -34 314 297 69 14 chrX 3468533 3468678 -159131252 - L1MD2 LINE L1 -1 6358 6206 1048 110 0 14 chrX 3468853 3468998 -159130932 + AluSq/x SINE Alu 1 143 -170 30 45 0 0 chrX 3469422 3469466 -159130464 + GC_rich Low_complexity Low_complexity 1 44 0 315 243 20 15 chrX 3471055 3471262 -159128668 + CT-rich Low_complexity Low_complexity 1 208 0 2069 102 0 7 chrX 3472317 3472592 -159127338 + AluSx SINE Alu 1 273 -39 1620 183 23 20 chrX 3472903 3473204 -159126726 + AluJb SINE Alu 1 302 -10 374 297 61 0 chrX 3473621 3473786 -159126144 - L1MD3 LINE L1 -19 7976 7802 1121 129 0 23 chrX 3473787 3473958 -159125972 - FRAM SINE Alu -10 166 1 344 260 7 84 chrX 3473958 3474112 -159125818 - L1MD2 LINE L1 -176 6183 6042 2108 99 57 0 chrX 3474126 3474408 -159125522 - AluSp SINE Alu -15 298 1 2052 164 23 3 chrX 3474619 3474973 -159124957 - MLT1A1 LTR MaLR -4 361 1 209 106 0 64 chrX 3475323 3475370 -159124560 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 449 167 0 0 chrX 3475400 3475472 -159124458 - FLAM_A SINE Alu -26 116 45 199 333 30 30 chrX 3475474 3475573 -159124357 + L2 LINE L2 3191 3289 -24 315 286 95 19 chrX 3475591 3475696 -159124234 + MER81 DNA DNA 1 113 -1 1885 148 7 13 chrX 3475837 3476141 -159123789 - AluJb SINE Alu -4 308 7 728 157 35 0 chrX 3476380 3476495 -159123435 + AluJb SINE Alu 176 294 -18 1722 162 17 24 chrX 3476504 3476801 -159123129 + AluJo SINE Alu 1 295 -17 2469 64 0 19 chrX 3476999 3477310 -159122620 + AluY SINE Alu 1 305 -6 1737 194 14 14 chrX 3477564 3477914 -159122016 + MLT1A1 LTR MaLR 14 363 -2 240 292 0 0 chrX 3478004 3478069 -159121861 - MLT1E2 LTR MaLR 0 626 562 1285 169 8 8 chrX 3478071 3478319 -159121611 + L1MA6 LINE L1 5675 5922 -378 1699 142 31 17 chrX 3478320 3478608 -159121322 - AluJb SINE Alu -20 292 1 2101 134 3 13 chrX 3479019 3479333 -159120597 + AluSx SINE Alu 1 311 -1 1132 124 0 28 chrX 3479684 3479861 -159120069 - FRAM SINE Alu -9 167 1 1730 179 10 17 chrX 3480007 3480303 -159119627 + AluJb SINE Alu 13 306 -6 4199 101 0 0 chrX 3480860 3481414 -159118516 - MER41A LTR ERV1 0 554 1 1897 168 24 0 chrX 3481592 3481890 -159118040 + AluJo SINE Alu 8 312 0 1671 158 39 32 chrX 3482088 3482218 -159117712 + AluJb SINE Alu 1 129 -183 207 0 0 0 chrX 3482218 3482241 -159117689 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1671 158 39 32 chrX 3482241 3482420 -159117510 + AluJb SINE Alu 129 312 0 189 196 0 0 chrX 3482428 3482474 -159117456 + A-rich Low_complexity Low_complexity 1 46 0 315 296 22 7 chrX 3482605 3482740 -159117190 - L1M4 LINE L1 -2910 3236 3100 2285 107 0 16 chrX 3483337 3483654 -159116276 + AluSx SINE Alu 1 312 0 2242 112 3 3 chrX 3483655 3483958 -159115972 + AluSx SINE Alu 2 304 -8 263 71 0 0 chrX 3483984 3484026 -159115904 + Alu SINE Alu 258 299 -1 2083 109 6 64 chrX 3484100 3484430 -159115500 + AluSx SINE Alu 1 311 -1 200 100 25 0 chrX 3484443 3484483 -159115447 + (CAA)n Simple_repeat Simple_repeat 2 42 0 784 149 0 71 chrX 3484506 3484647 -159115283 + FLAM_C SINE Alu 3 133 0 1700 179 3 19 chrX 3485140 3485448 -159114482 + AluJo SINE Alu 1 303 -9 1700 187 0 39 chrX 3485607 3485917 -159114013 - AluJb SINE Alu -12 300 3 2003 131 7 0 chrX 3485931 3486253 -159113677 - AluSx SINE Alu 0 324 1 1924 162 17 8 chrX 3486334 3486685 -159113245 + MER47A DNA MER2_type 13 366 0 1897 125 39 0 chrX 3486685 3486996 -159112934 - MLT1A1 LTR MaLR -32 333 11 1984 124 7 0 chrX 3487315 3487590 -159112340 + AluJo SINE Alu 36 312 0 204 363 26 18 chrX 3487781 3487894 -159112036 + L2 LINE L2 2181 2294 -1020 1257 244 64 33 chrX 3487966 3488388 -159111542 - MLT1C LTR MaLR -27 440 6 663 176 60 166 chrX 3488403 3488554 -159111376 - MLT1C LTR MaLR -122 345 180 2177 91 3 30 chrX 3488554 3488882 -159111048 - AluSq SINE Alu 0 313 5 663 176 60 166 chrX 3488882 3489021 -159110909 - MLT1C LTR MaLR -287 180 102 2636 51 0 10 chrX 3489021 3489335 -159110595 - AluY SINE Alu 0 311 1 663 176 60 166 chrX 3489335 3489423 -159110507 - MLT1C LTR MaLR -365 102 6 2564 67 0 0 chrX 3490164 3490463 -159109467 + AluY SINE Alu 1 299 -12 539 219 8 8 chrX 3490464 3490592 -159109338 - MER3 DNA MER1_type -80 129 2 745 238 52 9 chrX 3490602 3490812 -159109118 + MER20 DNA MER1_type 1 219 0 303 191 0 0 chrX 3490830 3490898 -159109032 + CT-rich Low_complexity Low_complexity 1 68 0 307 191 26 17 chrX 3490921 3491036 -159108894 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 237 149 0 21 chrX 3491092 3491139 -159108791 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 308 131 0 16 chrX 3491139 3491200 -159108730 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 737 231 42 46 chrX 3491204 3491420 -159108510 + MER20 DNA MER1_type 1 215 -4 537 237 63 90 chrX 3491591 3491994 -159107936 + LTR15 LTR ERV1 112 596 0 1841 168 7 0 chrX 3492236 3492540 -159107390 - AluJb SINE Alu -6 306 1 347 220 0 20 chrX 3492880 3492980 -159106950 - L1MB7 LINE L1 0 6184 6087 2466 82 0 0 chrX 3492990 3493295 -159106635 - AluY SINE Alu -6 305 1 1640 177 21 7 chrX 3493305 3493588 -159106342 - AluJo SINE Alu -24 288 2 1781 146 13 48 chrX 3494101 3494410 -159105520 - AluJo SINE Alu -14 298 1 2303 104 0 0 chrX 3494530 3494827 -159105103 - AluSx SINE Alu -15 297 1 1530 141 0 4 chrX 3494830 3495057 -159104873 - AluSg/x SINE Alu -2 310 85 1473 149 86 4 chrX 3495693 3495961 -159103969 + AluJo SINE Alu 3 292 -20 685 143 0 61 chrX 3495981 3496128 -159103802 + L1MB3 LINE L1 6045 6182 -1 2326 86 3 10 chrX 3496140 3496441 -159103489 + AluSx SINE Alu 7 305 -7 813 182 8 0 chrX 3496455 3496587 -159103343 + FLAM_C SINE Alu 1 133 0 1900 154 0 7 chrX 3496926 3497225 -159102705 - AluJb SINE Alu -13 299 3 284 253 12 12 chrX 3497302 3497385 -159102545 - L1ME1 LINE L1 -22 6144 6062 264 246 254 7 chrX 3497437 3497575 -159102355 - MIR SINE MIR -12 250 79 501 187 23 12 chrX 3497629 3497800 -159102130 + GA-rich Low_complexity Low_complexity 4 176 0 2253 127 0 6 chrX 3497874 3498188 -159101742 + AluSx SINE Alu 1 312 0 1087 168 24 0 chrX 3498191 3498400 -159101530 + MLT1B LTR MaLR 172 385 -5 2452 90 0 3 chrX 3498709 3499020 -159100910 - AluSg SINE Alu 0 310 1 1868 156 10 16 chrX 3499122 3499436 -159100494 - AluJo SINE Alu 0 312 1 1333 224 68 30 chrX 3499796 3500224 -159099706 - MLT1C LTR MaLR -23 444 1 409 212 223 0 chrX 3500234 3500427 -159099503 - MLT1C LTR MaLR -122 345 110 323 120 0 120 chrX 3500439 3500514 -159099416 - FLAM SINE Alu 0 133 68 281 191 64 4 chrX 3500496 3500563 -159099367 - Alu SINE Alu -249 53 1 * 410 250 10 0 chrX 3500563 3500663 -159099267 - MLT1C LTR MaLR -363 104 4 23 0 0 0 chrX 3501310 3501333 -159098597 + AT_rich Low_complexity Low_complexity 1 23 0 1604 156 21 10 chrX 3501333 3501621 -159098309 - AluSx SINE Alu -21 291 1 1237 174 123 8 chrX 3501638 3501891 -159098039 - AluJb SINE Alu -30 282 1 185 0 40 0 chrX 3501891 3501916 -159098014 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1388 155 7 69 chrX 3501916 3502220 -159097710 - AluJo SINE Alu -27 285 1 2094 97 0 0 chrX 3502547 3502826 -159097104 + AluSx SINE Alu 1 279 -33 306 0 0 0 chrX 3502826 3502860 -159097070 + (CAA)n Simple_repeat Simple_repeat 2 35 0 703 290 74 7 chrX 3503243 3503526 -159096404 - MER46C DNA MER2_type -32 306 5 1897 187 11 6 chrX 3503575 3503934 -159095996 + L1PA16 LINE L1 5806 6166 0 289 275 0 14 chrX 3504080 3504149 -159095781 - MLT1J LTR MaLR -328 183 116 1067 149 17 6 chrX 3505492 3505673 -159094257 + AluJb SINE Alu 129 311 -1 2191 184 13 33 chrX 3505749 3505937 -159093993 - L1MA9 LINE L1 -191 6121 5931 2513 114 3 14 chrX 3505937 3506305 -159093625 - THE1B LTR MaLR 0 364 1 2191 184 13 33 chrX 3506305 3506568 -159093362 - L1MA9 LINE L1 -381 5931 5679 513 126 0 2 chrX 3506954 3507161 -159092769 + AluJo SINE Alu 9 250 -62 329 129 0 16 chrX 3507255 3507317 -159092613 + (GGA)n Simple_repeat Simple_repeat 3 63 0 470 244 6 0 chrX 3507400 3507556 -159092374 + GA-rich Low_complexity Low_complexity 1 157 0 246 105 0 0 chrX 3507977 3508015 -159091915 + (TC)n Simple_repeat Simple_repeat 2 39 0 2078 154 38 3 chrX 3508908 3509252 -159090678 - MLT1A1 LTR MaLR -5 360 5 186 133 0 0 chrX 3509953 3509983 -159089947 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1299 180 120 11 chrX 3509986 3510253 -159089677 - AluJo SINE Alu -4 298 3 263 191 0 21 chrX 3510299 3510346 -159089584 + MLT1C LTR MaLR 422 467 0 23 54 0 0 chrX 3510748 3510785 -159089145 + AT_rich Low_complexity Low_complexity 1 37 0 893 172 6 0 chrX 3510793 3510956 -159088974 - AluJb SINE Alu -26 286 123 22 56 0 0 chrX 3510956 3510992 -159088938 + AT_rich Low_complexity Low_complexity 1 36 0 1284 201 123 4 chrX 3511017 3511285 -159088645 - AluJo SINE Alu -2 300 1 913 124 0 0 chrX 3511596 3511725 -159088205 + FLAM_C SINE Alu 1 129 -4 1456 132 4 0 chrX 3511739 3511966 -159087964 + AluSg/x SINE Alu 83 310 0 1790 150 3 0 chrX 3512150 3512436 -159087494 + AluJb SINE Alu 5 291 -21 583 266 31 36 chrX 3512913 3513105 -159086825 - MER20 DNA MER1_type -28 191 1 393 216 47 18 chrX 3513106 3513277 -159086653 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 840 204 31 62 chrX 3513387 3513612 -159086318 - MER20 DNA MER1_type -1 218 1 450 0 0 0 chrX 3513624 3513674 -159086256 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 401 131 77 36 chrX 3513715 3513883 -159086047 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 925 224 28 9 chrX 3513893 3514107 -159085823 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chrX 3514583 3514604 -159085326 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 3514795 3514835 -159085095 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrX 3515717 3515740 -159084190 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chrX 3515994 3516018 -159083912 + AT_rich Low_complexity Low_complexity 1 24 0 1718 166 0 19 chrX 3516058 3516365 -159083565 - AluJo SINE Alu -9 303 3 707 207 0 0 chrX 3516366 3516501 -159083429 - AluJo SINE Alu -176 136 2 2375 69 0 7 chrX 3516535 3516838 -159083092 + AluY SINE Alu 1 301 -10 939 134 0 0 chrX 3516849 3516991 -159082939 + AluSg/x SINE Alu 168 309 -1 2025 175 25 55 chrX 3516997 3517472 -159082458 - L1MB3 LINE L1 -63 6120 5660 1280 170 4 0 chrX 3517495 3517724 -159082206 - AluSg/x SINE Alu -10 302 73 411 218 0 0 chrX 3517796 3517897 -159082033 + (CA)n Simple_repeat Simple_repeat 1 101 0 1855 191 12 29 chrX 3518018 3518432 -159081498 - L1PB4 LINE L1 -1 6155 5749 244 191 29 29 chrX 3518439 3518455 -159081475 + L1P5 LINE L1 5476 5491 -663 1631 183 0 13 chrX 3518455 3518767 -159081163 + AluJo SINE Alu 3 310 -2 244 191 29 29 chrX 3518767 3518818 -159081112 + L1P5 LINE L1 5490 5543 -611 191 263 88 120 chrX 3519164 3519338 -159080592 + L2 LINE L2 2347 2514 -800 1416 222 13 0 chrX 3519338 3519522 -159080408 - AluJo SINE Alu -6 306 115 387 0 0 0 chrX 3519522 3519565 -159080365 + (TG)n Simple_repeat Simple_repeat 2 44 0 1416 222 13 0 chrX 3519565 3519682 -159080248 - AluJo SINE Alu -197 115 1 191 263 88 120 chrX 3519682 3519724 -159080206 + L2 LINE L2 2514 2556 -758 755 169 0 0 chrX 3519852 3519970 -159079960 + AluJo/FLAM SINE Alu 2 119 -193 1466 199 31 0 chrX 3519970 3520262 -159079668 - AluJo SINE Alu -7 305 5 2412 81 0 0 chrX 3520268 3520577 -159079353 - AluY SINE Alu -2 309 1 828 141 15 0 chrX 3520577 3520712 -159079218 - AluJo SINE Alu -175 137 1 1581 167 39 0 chrX 3521381 3521663 -159078267 - AluJo SINE Alu -16 296 4 229 185 31 0 chrX 3522055 3522120 -159077810 + CT-rich Low_complexity Low_complexity 4 70 0 1313 86 11 5 chrX 3523090 3523277 -159076653 + AluSg/x SINE Alu 125 312 0 1514 171 51 14 chrX 3523715 3524008 -159075922 - AluJo SINE Alu -8 304 1 1642 176 3 17 chrX 3524403 3524698 -159075232 + AluJb SINE Alu 1 291 -21 2228 90 7 0 chrX 3524700 3525000 -159074930 + AluSq SINE Alu 1 302 -11 1672 183 13 6 chrX 3525414 3525731 -159074199 - MLT1B LTR MaLR 0 390 72 1280 229 42 11 chrX 3525867 3526221 -159073709 + MLT1A1 LTR MaLR 1 365 0 1764 173 0 22 chrX 3528210 3528528 -159071402 + AluJb SINE Alu 2 312 0 245 96 62 48 chrX 3528606 3528752 -159071178 + (TA)n Simple_repeat Simple_repeat 1 148 0 527 41 67 58 chrX 3528778 3529381 -159070549 + (TA)n Simple_repeat Simple_repeat 1 608 0 341 211 105 0 chrX 3529446 3529541 -159070389 - MLT2B2 LTR ERVL -410 105 1 1962 159 17 11 chrX 3529545 3529904 -159070026 - MLT1A1 LTR MaLR -1 364 4 1935 191 16 0 chrX 3529953 3530319 -159069611 - MLT1B LTR MaLR -18 372 1 1302 96 0 0 chrX 3530379 3530556 -159069374 - AluSg/x SINE Alu -2 308 132 2351 77 0 0 chrX 3530557 3530854 -159069076 - AluY SINE Alu -14 297 1 679 140 0 0 chrX 3530854 3530961 -159068969 - L1PB1 LINE L1 -117 6034 5928 323 224 19 28 chrX 3530964 3531071 -159068859 - Charlie5 DNA MER1_type -273 2339 2234 276 237 30 59 chrX 3531057 3531192 -159068738 - Charlie5 DNA MER1_type -2476 136 6 * 2053 139 0 0 chrX 3532084 3532394 -159067536 - AluJb SINE Alu -2 310 1 2536 42 3 0 chrX 3532441 3532751 -159067179 - AluY SINE Alu 0 311 1 1776 173 3 6 chrX 3532821 3533133 -159066797 - AluJo SINE Alu -1 311 1 485 131 12 0 chrX 3533134 3533218 -159066712 + CT-rich Low_complexity Low_complexity 1 85 0 1001 127 0 6 chrX 3533219 3533400 -159066530 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1316 146 13 34 chrX 3533715 3533948 -159065982 - MER46A DNA MER2_type -7 229 2 781 191 0 0 chrX 3534051 3534192 -159065738 - FLAM_C SINE Alu 0 143 3 468 0 0 0 chrX 3534332 3534384 -159065546 + (CA)n Simple_repeat Simple_repeat 1 52 0 258 309 49 16 chrX 3534386 3534509 -159065421 - L1MC5 LINE L1 -69 7892 7766 326 143 0 100 chrX 3534602 3534672 -159065258 + AluJo SINE Alu 85 147 -155 * 804 222 125 0 chrX 3534671 3534847 -159065083 + MER58A DNA MER1_type 27 224 0 1642 235 5 3 chrX 3534900 3535292 -159064638 + L1MB3 LINE L1 5790 6182 -1 294 243 35 18 chrX 3535294 3535463 -159064467 + (TA)n Simple_repeat Simple_repeat 2 173 0 80 70 0 0 chrX 3535500 3535657 -159064273 + AT_rich Low_complexity Low_complexity 1 157 0 226 296 23 6 chrX 3535716 3535892 -159064038 + (TA)n Simple_repeat Simple_repeat 2 180 0 2068 120 7 3 chrX 3536670 3536978 -159062952 - AluSg SINE Alu -1 309 1 702 151 36 130 chrX 3536988 3537044 -159062886 - L1MB5 LINE L1 -1 6179 6119 1591 182 0 7 chrX 3537044 3537340 -159062590 - AluJo SINE Alu -18 294 1 702 151 36 130 chrX 3537340 3537475 -159062455 - L1MB5 LINE L1 -61 6119 6006 492 198 116 16 chrX 3537475 3537596 -159062334 - MLT1C LTR MaLR -327 140 8 1593 188 3 13 chrX 3538566 3538875 -159061055 - AluJo SINE Alu -6 306 1 1295 139 60 0 chrX 3539620 3539821 -159060109 - LTR36 LTR ERV1 0 611 399 2104 112 3 22 chrX 3539960 3540274 -159059656 - AluSx SINE Alu -4 308 1 180 0 0 0 chrX 3540346 3540366 -159059564 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1566 160 110 10 chrX 3540372 3540571 -159059359 - L1PA15 LINE L1 -21 6144 5946 414 179 193 50 chrX 3540571 3540711 -159059219 - L1MA4 LINE L1 -362 5938 5779 718 99 9 9 chrX 3541435 3541546 -159058384 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chrX 3541552 3541576 -159058354 + AT_rich Low_complexity Low_complexity 1 24 0 4244 122 18 0 chrX 3541731 3542355 -159057575 - MER41B LTR ERV1 0 635 1 256 239 15 15 chrX 3543318 3543385 -159056545 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 443 256 10 0 chrX 3543399 3543704 -159056226 + (CCCA)n Simple_repeat Simple_repeat 1 308 0 858 180 0 0 chrX 3543707 3543885 -159056045 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 220 195 26 39 chrX 3543929 3544083 -159055847 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 518 207 23 0 chrX 3544096 3544270 -159055660 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 22 35 0 0 chrX 3544731 3544760 -159055170 + AT_rich Low_complexity Low_complexity 1 29 0 2068 98 23 10 chrX 3544929 3545236 -159054694 + AluSx SINE Alu 1 311 -1 523 235 0 13 chrX 3545857 3546010 -159053920 + CT-rich Low_complexity Low_complexity 4 154 0 341 58 0 39 chrX 3546018 3546070 -159053860 + (TTTCC)n Simple_repeat Simple_repeat 1 50 0 419 143 16 0 chrX 3546073 3546136 -159053794 - AluSp/q SINE Alu -41 272 209 2056 94 0 4 chrX 3546138 3546413 -159053517 - AluSx SINE Alu -38 274 1 1940 164 0 10 chrX 3547100 3547404 -159052526 + AluJo SINE Alu 1 301 -11 300 314 0 0 chrX 3547579 3547665 -159052265 + Charlie1 DNA MER1_type 2350 2435 -326 651 256 32 97 chrX 3547729 3547987 -159051943 - Charlie1 DNA MER1_type 0 2761 2538 1701 149 13 49 chrX 3547987 3548295 -159051635 + AluJb SINE Alu 1 297 -15 651 256 32 97 chrX 3548295 3548447 -159051483 - Charlie1 DNA MER1_type -223 2538 2378 30 21 0 21 chrX 3548701 3548730 -159051200 + AT_rich Low_complexity Low_complexity 1 30 -17 2131 126 0 0 chrX 3548730 3549023 -159050907 - AluSx SINE Alu -19 293 1 30 21 0 21 chrX 3549023 3549041 -159050889 + AT_rich Low_complexity Low_complexity 30 47 0 1756 158 13 16 chrX 3549401 3549704 -159050226 - AluJo SINE Alu -2 310 9 1890 128 3 102 chrX 3549711 3550055 -159049875 - AluJo SINE Alu -2 310 1 1298 237 93 32 chrX 3551035 3551474 -159048456 - MLT1C LTR MaLR -1 466 1 806 236 146 37 chrX 3551484 3551806 -159048124 - MLT1C LTR MaLR -122 345 5 1933 137 137 34 chrX 3552093 3552408 -159047522 + MSTA LTR MaLR 1 365 -63 2519 66 0 3 chrX 3552408 3552713 -159047217 - AluY SINE Alu -7 304 1 1933 137 137 34 chrX 3552713 3552785 -159047145 + MSTA LTR MaLR 365 428 0 1082 185 15 10 chrX 3553133 3553333 -159046597 + AluJo SINE Alu 97 297 -15 222 352 0 0 chrX 3553351 3553422 -159046508 - L2 LINE L2 -1 3271 3201 1636 156 0 59 chrX 3553437 3553744 -159046186 + AluJb SINE Alu 5 293 -19 1922 132 4 0 chrX 3553960 3554232 -159045698 - AluSx SINE Alu -39 273 1 1259 164 19 0 chrX 3554234 3554447 -159045483 - AluJb SINE Alu -9 303 87 5877 138 12 38 chrX 3554451 3555227 -159044703 - L1MA5A LINE L1 0 6297 5503 1971 138 3 10 chrX 3555227 3555523 -159044407 + AluJb SINE Alu 1 294 -18 5877 138 12 38 chrX 3555523 3555579 -159044351 - L1MA5A LINE L1 -794 5503 5447 2349 76 0 7 chrX 3555579 3555869 -159044061 - AluSq SINE Alu -3 310 23 5877 138 12 38 chrX 3555869 3556089 -159043841 - L1MA5A LINE L1 -850 5447 5271 21 36 0 0 chrX 3557086 3557114 -159042816 + AT_rich Low_complexity Low_complexity 1 28 0 2201 116 0 0 chrX 3557120 3557414 -159042516 + AluY SINE Alu 1 294 -17 1769 170 3 26 chrX 3558064 3558375 -159041555 + AluJo SINE Alu 1 304 -8 703 180 0 50 chrX 3558772 3558911 -159041019 - FLAM_C SINE Alu -1 132 1 1515 173 3 21 chrX 3559415 3559698 -159040232 - AluJo SINE Alu -14 298 21 21 0 0 0 chrX 3559750 3559771 -159040159 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrX 3559803 3559839 -159040091 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chrX 3560616 3560644 -159039286 + AT_rich Low_complexity Low_complexity 1 28 0 1816 153 0 19 chrX 3560828 3561135 -159038795 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 3561868 3561892 -159038038 + AT_rich Low_complexity Low_complexity 1 24 0 623 277 5 29 chrX 3562049 3562255 -159037675 - L1MB8 LINE L1 0 6178 5978 1547 110 239 146 chrX 3562255 3562564 -159037366 - Charlie3 DNA MER1_type 0 2712 2 1262 217 7 7 chrX 3562565 3562855 -159037075 - L1MB8 LINE L1 -190 5984 5695 439 255 19 9 chrX 3562724 3562890 -159037040 - L1PA13 LINE L1 -336 5825 5662 * 1257 226 100 25 chrX 3563207 3563606 -159036324 - MLT1C LTR MaLR -17 450 22 1080 212 91 39 chrX 3563634 3563964 -159035966 - MLT1C LTR MaLR -120 347 1 1892 149 38 54 chrX 3564361 3564529 -159035401 - L1MA8 LINE L1 0 6291 6122 793 160 0 0 chrX 3564529 3564654 -159035276 - FLAM_C SINE Alu -7 126 2 1892 149 38 54 chrX 3564654 3564909 -159035021 - L1MA8 LINE L1 -169 6122 5875 430 145 14 0 chrX 3564951 3565020 -159034910 + AluSg/x SINE Alu 211 280 -32 1115 197 136 15 chrX 3565037 3565301 -159034629 - Tigger3(Golem) DNA MER2_type -2733 296 1 1872 140 10 13 chrX 3565324 3565624 -159034306 - AluJo SINE Alu -9 303 5 415 218 15 30 chrX 3565688 3565821 -159034109 + (TA)n Simple_repeat Simple_repeat 1 131 0 520 216 0 22 chrX 3565826 3566007 -159033923 + (TATG)n Simple_repeat Simple_repeat 2 178 0 242 289 25 55 chrX 3566623 3566761 -159033169 + MIR3 SINE MIR 28 162 -46 318 96 22 0 chrX 3567400 3567457 -159032473 - L1M2 LINE L1 -505 5786 5724 2045 156 0 0 chrX 3567672 3567979 -159031951 + AluJb SINE Alu 1 307 -5 313 233 14 0 chrX 3568010 3568083 -159031847 - MIR SINE MIR -119 143 70 2981 160 35 28 chrX 3568097 3568479 -159031451 - L1MA4A LINE L1 -28 6275 5883 1992 115 44 10 chrX 3568479 3568775 -159031155 - AluSx SINE Alu -6 306 1 2981 160 35 28 chrX 3568775 3568967 -159030963 - L1MA4A LINE L1 -420 5883 5694 215 304 108 20 chrX 3568996 3569098 -159030832 + MER5B DNA MER1_type 6 116 -62 2180 119 0 31 chrX 3569107 3569426 -159030504 - AluSx SINE Alu -1 311 3 563 214 42 117 chrX 3569568 3569810 -159030120 - L1MC4a LINE L1 -1759 6049 5833 2437 87 7 0 chrX 3569810 3570120 -159029810 - AluSx SINE Alu 0 312 1 563 214 42 117 chrX 3570120 3570185 -159029745 - L1MC4a LINE L1 -1975 5833 5765 1646 175 11 11 chrX 3570200 3570486 -159029444 - AluJo SINE Alu -26 286 1 28 29 0 0 chrX 3571323 3571358 -159028572 + AT_rich Low_complexity Low_complexity 1 35 0 2306 91 3 7 chrX 3572494 3572792 -159027138 - AluSx SINE Alu -15 297 1 1693 195 7 3 chrX 3573235 3573527 -159026403 + AluJb SINE Alu 1 293 -19 2277 103 3 0 chrX 3573530 3573832 -159026098 + AluSq SINE Alu 1 303 -10 438 53 0 0 chrX 3574367 3574424 -159025506 + (TG)n Simple_repeat Simple_repeat 2 58 0 1951 157 3 3 chrX 3574809 3575115 -159024815 + AluJb SINE Alu 1 306 -6 753 165 31 0 chrX 3575185 3575312 -159024618 + FLAM_C SINE Alu 2 132 -1 675 148 0 9 chrX 3575625 3575733 -159024197 + U6 snRNA snRNA 1 107 0 2346 74 17 3 chrX 3576316 3576615 -159023315 + AluSx SINE Alu 1 303 -9 183 80 0 0 chrX 3577326 3577351 -159022579 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 432 0 0 0 chrX 3577930 3577978 -159021952 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 255 51 19 chrX 3578683 3578784 -159021146 - MER58A DNA MER1_type -2197 223 127 1520 189 28 7 chrX 3578784 3579075 -159020855 + AluJo SINE Alu 6 302 -10 707 255 51 19 chrX 3579075 3579189 -159020741 - MER58A DNA MER1_type -2293 127 1 228 67 0 0 chrX 3579952 3579982 -159019948 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1603 158 0 26 chrX 3579983 3580255 -159019675 - AluJo SINE Alu -32 280 16 310 185 61 21 chrX 3580545 3580890 -159019040 + (TA)n Simple_repeat Simple_repeat 1 358 0 29 0 0 0 chrX 3580908 3580937 -159018993 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrX 3581122 3581150 -159018780 + AT_rich Low_complexity Low_complexity 1 28 0 2867 131 42 17 chrX 3581152 3581415 -159018515 - L1MA5A LINE L1 -6 6291 6036 2331 111 0 0 chrX 3581415 3581712 -159018218 + AluSg SINE Alu 1 297 -13 2867 131 42 17 chrX 3581712 3581974 -159017956 - L1MA5A LINE L1 -261 6036 5753 1847 170 0 19 chrX 3581978 3582289 -159017641 - AluJb SINE Alu -5 307 3 300 182 299 26 chrX 3582382 3582536 -159017394 - L1MB2 LINE L1 -7 6164 5969 180 0 0 0 chrX 3583904 3583924 -159016006 + (T)n Simple_repeat Simple_repeat 1 20 0 657 197 100 120 chrX 3584266 3584565 -159015365 - MER101 LTR ERV1 0 474 182 315 241 0 27 chrX 3584580 3584692 -159015238 - MER101 LTR ERV1 -186 288 180 256 294 16 32 chrX 3584809 3584935 -159014995 - MER101 LTR ERV1 -186 288 165 1120 199 3 77 chrX 3584944 3585231 -159014699 - MER101 LTR ERV1 -198 276 11 2749 39 0 3 chrX 3585482 3585794 -159014136 - AluY SINE Alu 0 311 1 33 25 0 0 chrX 3585880 3585920 -159014010 + AT_rich Low_complexity Low_complexity 1 40 0 865 160 0 0 chrX 3586089 3586214 -159013716 + AluJo SINE Alu 90 214 -98 289 126 32 42 chrX 3586245 3586340 -159013590 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 1023 167 31 50 chrX 3586358 3586580 -159013350 - MER20 DNA MER1_type 0 219 2 495 307 100 28 chrX 3587263 3587742 -159012188 + L2 LINE L2 2729 3245 -68 378 258 44 107 chrX 3587805 3587968 -159011962 - L1MC4a LINE L1 -1958 5850 5713 2224 104 7 0 chrX 3587968 3588267 -159011663 + AluSq SINE Alu 1 301 -12 378 258 44 107 chrX 3588267 3588401 -159011529 - L1MC4a LINE L1 -2095 5713 5572 2177 115 0 0 chrX 3588402 3588688 -159011242 - AluJb SINE Alu -16 296 11 2154 137 83 21 chrX 3588699 3589086 -159010844 - L1MA7 LINE L1 -342 5949 5539 2533 70 0 0 chrX 3589213 3589512 -159010418 + AluSq SINE Alu 1 299 -14 2301 99 0 0 chrX 3589792 3590096 -159009834 - AluSq SINE Alu -9 304 1 4505 96 19 3 chrX 3590333 3590967 -159008963 + LTR9B LTR ERV1 1 644 0 198 0 0 0 chrX 3591085 3591107 -159008823 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1735 130 0 20 chrX 3591141 3591394 -159008536 + AluJo SINE Alu 4 251 -61 2121 89 36 30 chrX 3591394 3591691 -159008239 - LTR7 LTR ERV1 0 450 104 2583 58 0 6 chrX 3591691 3592004 -159007926 - AluY SINE Alu 0 311 1 2121 89 36 30 chrX 3592004 3592073 -159007857 - LTR7 LTR ERV1 -346 104 37 272 109 0 0 chrX 3592061 3592107 -159007823 + AluJo SINE Alu 257 302 0 * 452 183 113 35 chrX 3592122 3592237 -159007693 + MER63 DNA MER1_type 2 751 -311 2283 92 3 52 chrX 3592267 3592592 -159007338 - AluSq SINE Alu -4 309 1 2225 170 18 8 chrX 3593087 3593486 -159006444 + MER57A LTR ERV1 1 403 0 1654 149 51 14 chrX 3593694 3593969 -159005961 - AluJo SINE Alu -17 295 11 1991 131 24 0 chrX 3593988 3594278 -159005652 - AluSx SINE Alu -15 297 1 2423 81 7 0 chrX 3594343 3594641 -159005289 - AluY SINE Alu -11 300 1 2180 120 0 19 chrX 3594928 3595253 -159004677 - LTR8 LTR ERV1 -372 319 1 1914 140 3 29 chrX 3595977 3596285 -159003645 - AluJo SINE Alu -11 301 2 636 168 0 0 chrX 3596613 3596720 -159003210 - MER53 DNA DNA 0 189 83 933 194 6 0 chrX 3598161 3598321 -159001609 - Charlie3 DNA MER1_type -2546 164 4 539 157 0 0 chrX 3598706 3598795 -159001135 - MER4B LTR ERV1 -163 447 359 25 0 0 0 chrX 3598802 3598827 -159001103 + AT_rich Low_complexity Low_complexity 1 25 0 397 233 3 30 chrX 3598827 3599138 -159000792 + CT-rich Low_complexity Low_complexity 1 302 0 2056 131 10 0 chrX 3599683 3599981 -158999949 - AluJb SINE Alu -7 305 5 694 202 131 0 chrX 3600665 3600833 -158999097 - MER20 DNA MER1_type 0 219 30 2354 130 25 5 chrX 3601643 3602011 -158997919 - THE1C LTR MaLR 0 375 1 2066 158 0 0 chrX 3603206 3603577 -158996353 - AluSx SINE Alu 0 371 1 1750 197 16 35 chrX 3603709 3604079 -158995851 - MLT1A1 LTR MaLR -2 363 1 31 26 0 0 chrX 3604287 3604325 -158995605 + AT_rich Low_complexity Low_complexity 1 38 0 2333 102 0 0 chrX 3604492 3604787 -158995143 - AluSx SINE Alu -17 295 1 1790 164 0 32 chrX 3606364 3606674 -158993256 + AluJo SINE Alu 1 300 -12 1270 164 19 5 chrX 3607412 3607625 -158992305 + AluJb SINE Alu 73 288 -24 259 224 34 34 chrX 3607625 3607804 -158992126 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 30 0 0 chrX 3607810 3607843 -158992087 + AT_rich Low_complexity Low_complexity 1 33 0 253 230 13 0 chrX 3607843 3607995 -158991935 + (TA)n Simple_repeat Simple_repeat 1 154 0 417 100 86 14 chrX 3609074 3609144 -158990786 + MLT2B1 LTR ERVL 354 428 -92 767 180 33 27 chrX 3609144 3609294 -158990636 - AluJb SINE Alu -49 263 113 269 255 118 0 chrX 3609330 3609432 -158990498 + L2 LINE L2 3197 3310 -3 355 279 41 8 chrX 3609704 3609826 -158990104 - MLT1H LTR MaLR 0 549 424 * 438 288 8 0 chrX 3609816 3609941 -158989989 + MER20 DNA MER1_type 90 215 -4 656 125 19 10 chrX 3610030 3610134 -158989796 - U6 snRNA snRNA -2 105 1 232 320 0 48 chrX 3610222 3610347 -158989583 - MLT1H-int LTR MaLR -1616 119 1 393 287 65 51 chrX 3610350 3610567 -158989363 - MLT1H LTR MaLR -3 548 333 610 224 59 51 chrX 3610603 3610906 -158989024 + MLT1H1 LTR MaLR 243 547 -2 1495 166 121 10 chrX 3611202 3611515 -158988415 - MER7A DNA MER2_type 0 346 1 4426 121 11 2 chrX 3611552 3612180 -158987750 - MER41B LTR ERV1 0 635 2 1193 123 0 3 chrX 3612615 3612976 -158986954 + (TA)n Simple_repeat Simple_repeat 1 359 0 193 286 79 0 chrX 3613807 3613870 -158986060 - L2 LINE L2 0 3313 3246 395 143 30 48 chrX 3614334 3614502 -158985428 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 454 171 22 39 chrX 3614552 3614733 -158985197 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1597 134 28 0 chrX 3614908 3615155 -158984775 + L1MA7 LINE L1 5682 5935 -356 688 261 28 6 chrX 3615175 3615355 -158984575 - MER20 DNA MER1_type -6 213 30 807 174 0 0 chrX 3615497 3615629 -158984301 + AluJb SINE Alu 1 132 -180 1741 166 28 3 chrX 3615636 3615920 -158984010 + AluJb SINE Alu 6 296 -16 4274 110 23 2 chrX 3616070 3616690 -158983240 + MER41B LTR ERV1 1 633 -2 1960 157 0 7 chrX 3617099 3617404 -158982526 - AluJo SINE Alu -9 303 1 1969 187 7 12 chrX 3617416 3617822 -158982108 - L1MA3 LINE L1 0 6305 5902 1816 137 41 47 chrX 3617846 3618061 -158981869 - L1PB3 LINE L1 0 6154 5940 1804 163 0 7 chrX 3618061 3618350 -158981580 - AluJb SINE Alu -21 291 5 1816 137 41 47 chrX 3618350 3618477 -158981453 - L1PB3 LINE L1 -214 5940 5814 753 240 73 5 chrX 3618483 3618687 -158981243 + MER20 DNA MER1_type 1 218 -1 913 111 0 0 chrX 3618693 3618810 -158981120 + AluSp SINE Alu 1 117 -196 267 31 0 0 chrX 3619069 3619101 -158980829 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2882 57 5 94 chrX 3619690 3619923 -158980007 - L1PA10 LINE L1 -294 5874 5696 1840 81 76 0 chrX 3619923 3620159 -158979771 - AluSq SINE Alu -59 254 1 2882 57 5 94 chrX 3620159 3620361 -158979569 - L1PA10 LINE L1 -472 5696 5478 1252 71 130 0 chrX 3620361 3620545 -158979385 + L1PA10 LINE L1 5959 6166 -2 1677 209 30 5 chrX 3620769 3621142 -158978788 + L1MB5 LINE L1 5792 6173 -1 2059 133 3 0 chrX 3621153 3621500 -158978430 + AluSx SINE Alu 1 312 0 1623 138 7 67 chrX 3621731 3622028 -158977902 + AluSx SINE Alu 5 283 -29 350 130 0 0 chrX 3622223 3622277 -158977653 - MADE1 DNA Mariner -1 79 26 218 226 0 16 chrX 3622299 3622361 -158977569 + (TA)n Simple_repeat Simple_repeat 2 62 0 34 0 0 0 chrX 3622362 3622396 -158977534 + AT_rich Low_complexity Low_complexity 1 34 0 320 140 20 0 chrX 3622494 3622544 -158977386 - MER20 DNA MER1_type -1 218 168 1025 227 31 14 chrX 3622562 3622816 -158977114 - MLT2D LTR ERVL -39 481 128 2724 88 58 21 chrX 3622829 3623261 -158976669 + LTR7 LTR ERV1 1 448 -2 4608 114 68 39 chrX 3623263 3624262 -158975668 + HERVH LTR ERV1 1 903 -6810 5328 14 2 0 chrX 3624289 3624883 -158975047 - L1PA2 LINE L1 -5 6150 5556 3454 12 5 0 chrX 3624884 3625444 -158974486 + L1PA2 LINE L1 4987 5550 -605 14831 90 11 8 chrX 3625444 3627527 -158972403 + HERVH LTR ERV1 899 2987 -4726 931 128 20 0 chrX 3627521 3627669 -158972261 + HERVH LTR ERV1 3140 3290 -4423 * 3472 111 0 6 chrX 3627659 3628164 -158971766 + HERVH LTR ERV1 3492 3993 -3720 4332 137 11 3 chrX 3628166 3628823 -158971107 + HERVH LTR ERV1 4488 5149 -2564 1420 110 23 14 chrX 3628824 3629042 -158970888 + HERVH LTR ERV1 5600 5819 -1894 * 2746 64 45 0 chrX 3629040 3629415 -158970515 + HERVH LTR ERV1 7322 7713 0 2626 99 58 21 chrX 3629415 3629847 -158970083 + LTR7 LTR ERV1 1 448 -2 321 213 8 134 chrX 3629850 3629977 -158969953 - MLT2D LTR ERVL -302 112 2 236 88 0 0 chrX 3629978 3630012 -158969918 - MLT2B2 LTR ERVL -481 34 1 228 136 0 23 chrX 3630012 3630046 -158969884 - MLT2C2 LTR ERVL -431 33 1 996 187 31 58 chrX 3630100 3630325 -158969605 + MER20 DNA MER1_type 1 219 0 24 77 0 0 chrX 3630418 3630470 -158969460 + AT_rich Low_complexity Low_complexity 1 52 0 705 161 15 8 chrX 3630552 3630682 -158969248 - MLT1A1 LTR MaLR -234 131 1 328 229 0 0 chrX 3630729 3630799 -158969131 + MER69 DNA AcHobo 2456 2525 -1 26 0 0 0 chrX 3631007 3631033 -158968897 + AT_rich Low_complexity Low_complexity 1 26 0 367 118 0 0 chrX 3631041 3631092 -158968838 - AluSx SINE Alu -7 295 245 23 0 0 0 chrX 3631092 3631115 -158968815 + AT_rich Low_complexity Low_complexity 1 23 0 1653 197 3 3 chrX 3631121 3631416 -158968514 - AluJo SINE Alu -17 295 1 430 197 0 0 chrX 3631856 3631927 -158968003 - MER81 DNA DNA -21 93 23 2657 165 0 52 chrX 3632009 3632115 -158967815 - MER66A LTR ERV1 0 478 368 1893 99 4 0 chrX 3632115 3632357 -158967573 - AluSx SINE Alu -59 253 11 2657 165 0 52 chrX 3632357 3632754 -158967176 - MER66A LTR ERV1 -110 368 1 683 214 35 23 chrX 3633077 3633250 -158966680 - MER20 DNA MER1_type -26 193 19 258 32 0 0 chrX 3633607 3633638 -158966292 + (GA)n Simple_repeat Simple_repeat 1 31 0 2214 102 7 0 chrX 3634718 3635011 -158964919 - AluSx SINE Alu -17 295 1 907 131 0 65 chrX 3635178 3635331 -158964599 - FLAM_C SINE Alu 0 143 1 913 112 176 70 chrX 3635711 3635898 -158964032 + AluJo SINE Alu 85 291 -21 1008 112 0 17 chrX 3635987 3636166 -158963764 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 180 111 0 0 chrX 3637099 3637126 -158962804 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1793 167 0 17 chrX 3637584 3637878 -158962052 - AluJo SINE Alu -11 301 13 2080 134 0 10 chrX 3637892 3638205 -158961725 - AluJb SINE Alu -2 310 1 915 172 7 0 chrX 3638209 3638360 -158961570 - MLT1A1 LTR MaLR -213 152 1 1741 157 0 38 chrX 3638977 3639137 -158960793 - AluJo SINE Alu -24 288 123 225 0 0 0 chrX 3639137 3639162 -158960768 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chrX 3639161 3639188 -158960742 + (GA)n Simple_repeat Simple_repeat 2 28 0 1741 157 0 38 chrX 3639162 3639188 -158960742 - AluJo SINE Alu -189 123 98 2252 90 0 0 chrX 3639188 3639465 -158960465 - AluY SINE Alu -34 277 1 1741 157 0 38 chrX 3639465 3639590 -158960340 - AluJo SINE Alu -214 98 13 2778 83 14 3 chrX 3640330 3640690 -158959240 + THE1B LTR MaLR 1 364 0 260 269 215 0 chrX 3840979 3841109 -158758821 + MLT2B1 LTR ERVL 5 162 -358 456 222 0 0 chrX 3841119 3841209 -158758721 - L1M2 LINE L1 -724 5588 5499 183 129 0 0 chrX 3841267 3841298 -158758632 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 152 0 0 chrX 3841361 3841407 -158758523 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1777 175 0 20 chrX 3841408 3841705 -158758225 - AluJo SINE Alu -21 291 1 408 190 131 73 chrX 3841712 3841838 -158758092 - MLT1D LTR MaLR -329 176 43 2015 148 38 40 chrX 3841838 3842330 -158757600 + LTR1B LTR ERV1 1 525 -301 992 338 113 21 chrX 3842441 3843122 -158756808 + L2 LINE L2 855 1598 -1716 1128 167 57 33 chrX 3843214 3843280 -158756650 + MLT1A1 LTR MaLR 1 64 -301 2114 158 25 0 chrX 3843280 3843634 -158756296 - THE1B LTR MaLR 0 364 2 1128 167 57 33 chrX 3843634 3843812 -158756118 + MLT1A1 LTR MaLR 64 251 -114 288 146 0 73 chrX 3843916 3844039 -158755891 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 301 184 0 126 chrX 3844045 3844148 -158755782 - L1MC4 LINE L1 -1339 6703 6614 * 317 270 11 11 chrX 3844060 3844149 -158755781 + L1MC4 LINE L1 6614 6702 -1340 1524 200 21 14 chrX 3844181 3844549 -158755381 - MER47B DNA MER2_type 0 418 1 312 200 13 27 chrX 3844577 3844683 -158755247 + (TA)n Simple_repeat Simple_repeat 1 106 -42 1832 127 66 33 chrX 3844683 3845046 -158754884 + THE1C LTR MaLR 1 375 0 312 200 13 27 chrX 3845046 3845089 -158754841 + (TA)n Simple_repeat Simple_repeat 106 148 0 1519 183 23 17 chrX 3845138 3845439 -158754491 - AluJb SINE Alu -9 303 1 333 254 15 15 chrX 3845467 3845601 -158754329 + (TA)n Simple_repeat Simple_repeat 2 135 0 614 322 152 39 chrX 3845862 3846375 -158753555 + L2 LINE L2 1720 2290 -1024 2404 142 22 52 chrX 3846384 3846828 -158753102 + Tigger2a DNA MER2_type 1 431 -3 301 265 147 5 chrX 3846904 3847115 -158752815 - L1M4 LINE L1 -3194 2952 2712 1896 138 3 22 chrX 3847119 3847468 -158752462 - MER4A LTR ERV1 -3 661 261 572 134 21 10 chrX 3847468 3847565 -158752365 - MER4A LTR ERV1 -566 98 1 311 265 56 47 chrX 3847565 3847780 -158752150 - L1M4 LINE L1 -3432 2714 2498 341 123 18 0 chrX 3848782 3848839 -158751091 + Tigger3(Golem) DNA MER2_type 2916 2973 -56 364 138 0 0 chrX 3848956 3849014 -158750916 + Tigger3(Golem) DNA MER2_type 2917 2974 -55 24 0 0 0 chrX 3849038 3849062 -158750868 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 3849573 3849595 -158750335 + AT_rich Low_complexity Low_complexity 1 22 0 2057 113 23 13 chrX 3849782 3850091 -158749839 + AluSq SINE Alu 1 312 -1 223 170 55 24 chrX 3851064 3851232 -158748698 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 248 217 63 21 chrX 3851284 3851427 -158748503 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 301 194 51 40 chrX 3851462 3851637 -158748293 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 369 202 0 0 chrX 3851849 3851923 -158748007 - MLT1D LTR MaLR -327 178 111 508 277 31 6 chrX 3852017 3852176 -158747754 - MIR SINE MIR 0 262 100 739 218 7 0 chrX 3852966 3853200 -158746730 - AluJb SINE Alu 0 374 140 2206 129 0 0 chrX 3853205 3853507 -158746423 - AluSx SINE Alu -9 303 2 2376 107 0 0 chrX 3853513 3853822 -158746108 - AluSq SINE Alu -4 309 1 1844 159 10 0 chrX 3854321 3854611 -158745319 - AluJo SINE Alu -19 293 1 1923 164 31 82 chrX 3854765 3855216 -158744714 - MSTC LTR MaLR 0 428 1 1510 175 133 6 chrX 3855364 3855695 -158744235 + MSTA LTR MaLR 1 373 -55 262 312 168 70 chrX 3855823 3856441 -158743489 - L2 LINE L2 -2634 680 2 979 261 17 17 chrX 3857599 3857944 -158741986 + L1MA9 LINE L1 5943 6287 -25 183 222 0 0 chrX 3857966 3858011 -158741919 + (TA)n Simple_repeat Simple_repeat 1 45 0 2389 83 0 3 chrX 3858992 3859292 -158740638 - AluSq SINE Alu -14 299 1 1657 161 7 4 chrX 3860113 3860393 -158739537 - AluJo SINE Alu -10 302 22 488 181 14 21 chrX 3860527 3860671 -158739259 + CT-rich Low_complexity Low_complexity 3 145 0 1499 215 13 0 chrX 3860874 3861388 -158738542 - AluJb SINE Alu 0 518 1 185 50 0 75 chrX 3861388 3861400 -158738530 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 3861696 3861718 -158738212 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 3861996 3862020 -158737910 + AT_rich Low_complexity Low_complexity 1 24 0 1073 262 115 49 chrX 3862744 3863171 -158736759 - LTR40a LTR ERVL 0 519 65 1847 168 0 7 chrX 3863218 3863540 -158736390 - AluJb SINE Alu 0 312 1 194 255 108 39 chrX 3864273 3864375 -158735555 + MIR SINE MIR 54 162 -100 673 216 211 15 chrX 3864395 3864594 -158735336 + MLT1A1 LTR MaLR 1 238 -127 1078 115 0 0 chrX 3864701 3864857 -158735073 + AluSp/q SINE Alu 156 311 -2 349 186 70 39 chrX 3864879 3865035 -158734895 + Charlie1 DNA MER1_type 2572 2732 -29 326 153 36 29 chrX 3865057 3865194 -158734736 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 2318 88 3 0 chrX 3865263 3865560 -158734370 - AluSx SINE Alu -14 298 1 411 284 100 50 chrX 3865593 3865832 -158734098 + MIR SINE MIR 5 255 -7 654 204 6 16 chrX 3866104 3866618 -158733312 + GA-rich Low_complexity Low_complexity 1 508 0 212 240 42 21 chrX 3867901 3867997 -158731933 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 28 0 0 0 chrX 3868386 3868414 -158731516 + AT_rich Low_complexity Low_complexity 1 28 0 596 124 21 10 chrX 3868901 3868998 -158730932 + MER4A LTR ERV1 1 98 -566 1524 164 184 40 chrX 3868998 3869351 -158730579 + MER4A LTR ERV1 261 664 0 203 171 0 0 chrX 3869359 3869400 -158730530 + GA-rich Low_complexity Low_complexity 1 41 0 791 154 0 28 chrX 3870297 3870440 -158729490 - LTR7 LTR ERV1 -311 139 1 22 0 0 0 chrX 3870470 3870492 -158729438 + AT_rich Low_complexity Low_complexity 1 22 0 2308 114 29 24 chrX 3870565 3870943 -158728987 + Tigger2a DNA MER2_type 1 380 -54 2779 197 12 25 chrX 3870945 3871508 -158728422 + L1PA16 LINE L1 5607 6162 -4 2340 118 25 6 chrX 3872031 3872388 -158727542 + THE1B LTR MaLR 1 364 0 1159 241 25 97 chrX 3872471 3873026 -158726904 - L1ME3A LINE L1 -5 6165 5651 808 117 7 36 chrX 3873706 3873843 -158726087 + THE1C LTR MaLR 1 133 -242 910 213 28 21 chrX 3873953 3874191 -158725739 + LTR1B LTR ERV1 545 826 0 185 350 8 51 chrX 3874308 3874425 -158725505 + L2 LINE L2 2940 3051 -221 916 190 27 36 chrX 3875464 3875685 -158724245 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 3875698 3875718 -158724212 + (T)n Simple_repeat Simple_repeat 1 20 0 3445 172 120 33 chrX 3876260 3877020 -158722910 + LTR1B LTR ERV1 1 826 0 231 145 66 0 chrX 3877576 3877652 -158722278 + (TATAG)n Simple_repeat Simple_repeat 5 85 0 253 161 18 18 chrX 3877844 3877900 -158722030 + L1MA5A LINE L1 6034 6089 -208 1448 191 70 29 chrX 3877901 3878556 -158721374 + LTR8A LTR ERV1 1 724 -3 1107 96 71 0 chrX 3878556 3878754 -158721176 + L1MA5A LINE L1 6084 6295 -2 228 361 56 21 chrX 3878883 3879027 -158720903 - L2 LINE L2 -189 3083 2935 282 206 22 65 chrX 3879857 3880041 -158719889 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 295 178 74 22 chrX 3880004 3880139 -158719791 + (TA)n Simple_repeat Simple_repeat 1 142 0 304 239 60 12 chrX 3880239 3880406 -158719524 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 405 175 33 55 chrX 3880389 3880572 -158719358 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 323 86 63 46 chrX 3880645 3880819 -158719111 + (TA)n Simple_repeat Simple_repeat 2 178 0 234 326 167 60 chrX 3881910 3882426 -158717504 + L2 LINE L2 1268 1838 -1476 204 184 31 0 chrX 3883681 3883779 -158716151 + (TA)n Simple_repeat Simple_repeat 1 101 0 324 0 0 0 chrX 3883829 3883865 -158716065 + (CA)n Simple_repeat Simple_repeat 2 37 0 651 173 48 7 chrX 3883866 3883983 -158715947 + (TCTA)n Simple_repeat Simple_repeat 1 112 -496 2235 131 0 0 chrX 3883983 3884295 -158715635 - AluSx SINE Alu 0 312 1 651 173 48 7 chrX 3884295 3884451 -158715479 + (TCTA)n Simple_repeat Simple_repeat 112 608 0 581 73 85 18 chrX 3884506 3884670 -158715260 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 729 102 40 23 chrX 3884690 3884867 -158715063 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 200 125 25 25 chrX 3884934 3884974 -158714956 + CT-rich Low_complexity Low_complexity 2 41 0 26 0 0 0 chrX 3886635 3886661 -158713269 + AT_rich Low_complexity Low_complexity 1 26 0 521 206 16 24 chrX 3887541 3887758 -158712172 + CT-rich Low_complexity Low_complexity 1 218 -314 1521 197 7 10 chrX 3887758 3888048 -158711882 - AluJb SINE Alu -23 289 1 521 206 16 24 chrX 3888048 3888078 -158711852 + CT-rich Low_complexity Low_complexity 218 532 0 790 75 47 31 chrX 3888803 3889059 -158710871 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 21 57 0 0 chrX 3889566 3889601 -158710329 + AT_rich Low_complexity Low_complexity 1 35 0 3064 147 49 9 chrX 3889717 3890290 -158709640 - L1MA4 LINE L1 -5 6295 5700 884 140 6 13 chrX 3890492 3890649 -158709281 - L1MA4 LINE L1 -593 5710 5555 2126 140 19 22 chrX 3890656 3891021 -158708909 - THE1B LTR MaLR 0 364 1 2131 145 0 0 chrX 3891418 3891715 -158708215 + AluSx SINE Alu 1 297 -15 1979 143 0 16 chrX 3892298 3892606 -158707324 - AluSx SINE Alu -9 303 1 2349 107 0 0 chrX 3893228 3893536 -158706394 - AluSx SINE Alu -4 308 1 330 45 0 0 chrX 3894792 3894836 -158705094 + U5 snRNA snRNA 1 44 -72 501 66 0 13 chrX 3895085 3895161 -158704769 + L1PB3 LINE L1 6073 6147 -7 1291 191 46 8 chrX 3895722 3895963 -158703967 - AluJo SINE Alu -61 251 2 185 105 0 26 chrX 3896074 3896112 -158703818 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 334 167 69 35 chrX 3896134 3896278 -158703652 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 21 0 0 0 chrX 3896932 3896953 -158702977 + AT_rich Low_complexity Low_complexity 1 21 0 462 291 172 28 chrX 3896997 3897434 -158702496 + L1ME3 LINE L1 3901 4400 -1746 311 252 16 8 chrX 3897459 3897582 -158702348 + L1ME3 LINE L1 4534 4657 -1489 30 0 0 0 chrX 3897833 3897863 -158702067 + AT_rich Low_complexity Low_complexity 1 30 0 2132 136 0 0 chrX 3897990 3898291 -158701639 + AluSx SINE Alu 1 304 -8 324 0 0 0 chrX 3898291 3898327 -158701603 + (TA)n Simple_repeat Simple_repeat 2 37 0 369 287 27 18 chrX 3899121 3899344 -158700586 + L1ME3 LINE L1 5725 5949 -213 3103 232 33 33 chrX 3899485 3900449 -158699481 + MER45B DNA AcHobo 1 964 -76 1133 214 0 0 chrX 3900455 3900661 -158699269 - MER58A DNA MER1_type -6 218 13 337 166 63 46 chrX 3904006 3904181 -158695749 + (TA)n Simple_repeat Simple_repeat 2 179 0 247 107 67 0 chrX 3904197 3904272 -158695658 + (TA)n Simple_repeat Simple_repeat 2 81 0 545 225 12 0 chrX 3904311 3904471 -158695459 + (CATA)n Simple_repeat Simple_repeat 1 162 0 2376 223 25 14 chrX 3904930 3905495 -158694435 - MER7C DNA MER2_type 0 602 32 269 179 30 30 chrX 3905560 3905627 -158694303 - MLT1C LTR MaLR 0 467 401 1164 149 0 0 chrX 3905630 3905798 -158694132 + AluSg/x SINE Alu 135 302 -8 539 275 25 35 chrX 3905818 3906018 -158693912 - MLT1C LTR MaLR -176 291 94 1103 247 32 23 chrX 3906415 3906768 -158693162 - MER87 LTR ERV1 -9 547 174 552 125 0 0 chrX 3906794 3906874 -158693056 + AluS SINE Alu 1 80 -233 338 106 0 0 chrX 3906875 3906922 -158693008 - Alu SINE Alu -254 47 1 1821 176 0 3 chrX 3906922 3907218 -158692712 - AluJo SINE Alu -12 300 6 699 210 7 0 chrX 3907227 3907370 -158692560 - L1PB4 LINE L1 -3 6153 6010 2314 124 65 10 chrX 3907394 3907797 -158692133 - MSTA LTR MaLR 0 428 4 2198 113 0 7 chrX 3909344 3909645 -158690285 + AluSx SINE Alu 1 299 -13 1777 171 7 0 chrX 3909789 3910087 -158689843 + AluJb SINE Alu 1 300 -12 631 254 86 62 chrX 3910294 3910679 -158689251 + L1ME3A LINE L1 5714 6107 -63 2303 92 0 7 chrX 3911225 3911519 -158688411 + AluSx SINE Alu 1 292 -20 228 35 0 0 chrX 3911579 3911608 -158688322 + (CA)n Simple_repeat Simple_repeat 1 29 0 2370 75 3 3 chrX 3911968 3912263 -158687667 + AluSp SINE Alu 1 295 -18 255 355 70 25 chrX 3915132 3915332 -158684598 + L2 LINE L2 223 431 -2883 3804 141 25 45 chrX 3917012 3917795 -158682135 + L1PB4 LINE L1 5386 6153 -3 2218 102 3 0 chrX 3917880 3918191 -158681739 - AluSp SINE Alu 0 312 1 242 29 29 0 chrX 3918604 3918639 -158681291 + (TG)n Simple_repeat Simple_repeat 1 36 0 3885 229 20 28 chrX 3918643 3919449 -158680481 - L1MC3 LINE L1 -935 6850 6040 1571 177 35 41 chrX 3919449 3919794 -158680136 - MER2 DNA MER2_type 0 344 2 3885 229 20 28 chrX 3919794 3920038 -158679892 - L1MC3 LINE L1 -1745 6040 5806 1006 231 104 24 chrX 3920038 3920209 -158679721 - MLT1A1 LTR MaLR 0 365 209 180 0 0 0 chrX 3920209 3920229 -158679701 + (GA)n Simple_repeat Simple_repeat 2 21 0 1006 231 104 24 chrX 3920229 3920395 -158679535 - MLT1A1 LTR MaLR -156 209 1 3885 229 20 28 chrX 3920395 3920432 -158679498 - L1MC3 LINE L1 -1979 5806 5770 1118 199 4 17 chrX 3920896 3921132 -158678798 - MLT1D LTR MaLR -3 502 270 207 0 0 0 chrX 3921184 3921207 -158678723 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1159 228 28 53 chrX 3921214 3921499 -158678431 - AluJo SINE Alu -34 278 1 681 262 26 47 chrX 3921504 3921756 -158678174 - MLT1D LTR MaLR -295 210 18 557 214 38 13 chrX 3921815 3921974 -158677956 + L1MA9 LINE L1 6112 6274 -38 1192 225 8 19 chrX 3921988 3922250 -158677680 + AluJo SINE Alu 47 305 -7 256 339 85 28 chrX 3924198 3924375 -158675555 + MER5A DNA MER1_type 1 187 -2 186 43 0 0 chrX 3924450 3924473 -158675457 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1351 218 39 105 chrX 3925154 3925667 -158674263 - LTR8 LTR ERV1 0 691 213 602 152 0 9 chrX 3925743 3925848 -158674082 + LTR24B LTR ERV1 1 104 -472 339 226 19 19 chrX 3925893 3925999 -158673931 + L1MA10 LINE L1 6228 6333 -1 2735 180 21 16 chrX 3926052 3926618 -158673312 - LTR24B LTR ERV1 -7 569 1 2079 191 5 2 chrX 3926618 3927023 -158672907 + LTR49 LTR ERV1 30 435 -160 232 130 148 19 chrX 3927009 3927063 -158672867 + LTR48 LTR ERV1 607 667 -120 * 2654 184 39 66 chrX 3927100 3927230 -158672700 + LTR8A LTR ERV1 34 166 -561 1832 163 3 7 chrX 3927230 3927530 -158672400 - AluJb SINE Alu -9 303 5 2654 184 39 66 chrX 3927530 3928112 -158671818 + LTR8A LTR ERV1 166 727 0 462 125 12 12 chrX 3928121 3928201 -158671729 + LTR49 LTR ERV1 516 595 0 1208 210 64 42 chrX 3928279 3928467 -158671463 + MLT1A2 LTR MaLR 1 202 -172 4600 119 16 13 chrX 3928467 3929156 -158670774 + LTR8 LTR ERV1 1 691 0 1208 210 64 42 chrX 3929156 3929324 -158670606 + MLT1A2 LTR MaLR 202 365 -9 941 246 81 44 chrX 3929446 3930009 -158669921 - LTR24B LTR ERV1 -7 569 1 243 152 0 0 chrX 3930116 3930162 -158669768 + (TG)n Simple_repeat Simple_repeat 1 46 0 2000 153 44 8 chrX 3930263 3930718 -158669212 - MER61E LTR ERV1 -40 461 1 1573 185 92 3 chrX 3930921 3931256 -158668674 - MLT1A1 LTR MaLR 0 365 1 1566 206 0 3 chrX 3931739 3932021 -158667909 - AluJb SINE Alu -31 281 1 1921 134 7 7 chrX 3933438 3933728 -158666202 + AluSx SINE Alu 1 290 -22 433 236 236 78 chrX 3933761 3934296 -158665634 - MER92B LTR ERV1 -8 628 10 361 21 0 0 chrX 3934464 3934511 -158665419 - MER41B LTR ERV1 -108 527 481 2947 150 35 4 chrX 3934675 3935194 -158664736 + LTR39 LTR ERV1 1 535 -248 3615 104 11 11 chrX 3935194 3935753 -158664177 - PABL_A LTR ERV1 0 660 102 1248 134 49 45 chrX 3935861 3936107 -158663823 + THE1B LTR MaLR 118 364 0 299 313 77 15 chrX 3936183 3936378 -158663552 - ERVL LTR ERVL -1545 4219 4013 222 214 0 0 chrX 3937760 3937802 -158662128 + GA-rich Low_complexity Low_complexity 2 43 0 2226 104 14 0 chrX 3937910 3938199 -158661731 + AluSx SINE Alu 1 293 -19 201 143 0 0 chrX 3938448 3938483 -158661447 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 796 176 6 6 chrX 3938483 3938659 -158661271 + GA-rich Low_complexity Low_complexity 3 178 0 770 167 21 0 chrX 3938670 3938907 -158661023 + GA-rich Low_complexity Low_complexity 1 242 0 1376 91 11 0 chrX 3940342 3940518 -158659412 + AluSx SINE Alu 2 179 -133 959 62 78 0 chrX 3940598 3940727 -158659203 + MER85 DNA T2_type 1 139 0 23 0 0 0 chrX 3940957 3940980 -158658950 + AT_rich Low_complexity Low_complexity 1 23 0 244 327 86 67 chrX 3941786 3942147 -158657783 - L2 LINE L2 0 3313 2946 2143 141 0 0 chrX 3942299 3942597 -158657333 - AluSx SINE Alu -14 298 1 29 78 0 0 chrX 3943428 3943492 -158656438 + AT_rich Low_complexity Low_complexity 1 64 0 318 132 0 0 chrX 3943816 3943869 -158656061 + (TG)n Simple_repeat Simple_repeat 2 54 0 2474 53 0 38 chrX 3944044 3944362 -158655568 + AluY SINE Alu 1 306 -5 970 126 6 55 chrX 3944905 3944929 -158655001 - L1MA2 LINE L1 -5 6299 6275 2561 105 6 3 chrX 3944929 3945290 -158654640 + THE1B LTR MaLR 3 364 0 970 126 6 55 chrX 3945290 3945447 -158654483 - L1MA2 LINE L1 -29 6275 6127 397 293 37 111 chrX 3945519 3945789 -158654141 + L2 LINE L2 969 1218 -2096 2239 149 3 0 chrX 3945854 3946222 -158653708 - L1PB4 LINE L1 -6 6150 5782 1026 92 17 11 chrX 3946237 3946411 -158653519 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2000 143 0 4 chrX 3946411 3946691 -158653239 - AluSx SINE Alu -33 279 1 664 208 0 34 chrX 3946691 3946840 -158653090 - FRAM SINE Alu -21 155 12 237 65 0 0 chrX 3946862 3946893 -158653037 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6399 197 10 26 chrX 3946896 3947585 -158652345 - L1PA15 LINE L1 -5 6160 5462 2338 70 0 17 chrX 3947585 3947885 -158652045 - AluY SINE Alu -16 295 1 6399 197 10 26 chrX 3947885 3948056 -158651874 - L1PA15 LINE L1 -703 5462 5290 1892 137 3 36 chrX 3948056 3948383 -158651547 - AluSx SINE Alu 0 312 1 6399 197 10 26 chrX 3948383 3949845 -158650085 - L1PA15 LINE L1 -875 5290 3882 2154 84 7 10 chrX 3949985 3950281 -158649649 - AluY SINE Alu -14 297 3 1915 157 0 25 chrX 3950395 3950714 -158649216 + AluJo SINE Alu 1 311 -1 429 310 74 77 chrX 3950873 3951237 -158648693 + L2 LINE L2 1970 2332 -982 1607 178 20 26 chrX 3951699 3952081 -158647849 + L1MB3 LINE L1 5659 5998 -185 404 181 29 3 chrX 3952052 3952146 -158647784 + L1MB3 LINE L1 6060 6143 -28 * 1509 205 0 35 chrX 3952149 3952437 -158647493 + AluJo SINE Alu 7 284 -28 23 33 0 0 chrX 3952484 3952514 -158647416 + AT_rich Low_complexity Low_complexity 1 30 0 413 370 31 43 chrX 3952570 3952919 -158647011 + L2 LINE L2 2570 2914 -400 2085 129 24 12 chrX 3953036 3953377 -158646553 + MLT1A1 LTR MaLR 1 345 -20 1973 120 3 17 chrX 3953439 3953739 -158646191 - AluSg SINE Alu -14 296 1 1630 164 58 0 chrX 3955199 3955473 -158644457 + AluJb SINE Alu 1 290 -22 1278 173 0 18 chrX 3956573 3956799 -158643131 + AluJo SINE Alu 83 304 -8 2260 118 0 0 chrX 3956838 3957135 -158642795 + AluSx SINE Alu 1 297 -15 327 200 0 15 chrX 3957203 3957268 -158642662 - MLT1E2 LTR MaLR -5 621 558 973 156 0 0 chrX 3957268 3957409 -158642521 + FRAM SINE Alu 20 160 -16 324 186 0 14 chrX 3957416 3957486 -158642444 - MLT1B LTR MaLR -67 438 370 2486 180 39 34 chrX 3957486 3957643 -158642287 - L1MB3 LINE L1 -56 6127 5972 4969 76 8 13 chrX 3957643 3958314 -158641616 + PABL_B LTR ERV1 1 667 0 2486 180 39 34 chrX 3958314 3958403 -158641527 - L1MB3 LINE L1 -211 5972 5885 2102 177 18 0 chrX 3958403 3958799 -158641131 + MER57A LTR ERV1 1 403 0 2486 180 39 34 chrX 3958799 3959117 -158640813 - L1MB3 LINE L1 -298 5885 5559 2050 98 0 4 chrX 3959218 3959484 -158640446 - AluSq SINE Alu -48 265 1 1631 184 0 27 chrX 3959501 3959795 -158640135 - AluJb SINE Alu -24 288 3 939 193 6 0 chrX 3959797 3959973 -158639957 - MLT1B LTR MaLR -213 177 1 1167 136 5 35 chrX 3960728 3960951 -158638979 - AluJo SINE Alu 0 306 90 1828 179 0 0 chrX 3961114 3961438 -158638492 + L1MA9 LINE L1 5464 5787 -525 606 123 29 29 chrX 3961448 3961619 -158638311 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 634 130 11 43 chrX 3961662 3961846 -158638084 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1266 228 72 70 chrX 3961847 3962317 -158637613 + L1MA9 LINE L1 5804 6274 -38 21 0 0 0 chrX 3962318 3962339 -158637591 + AT_rich Low_complexity Low_complexity 1 21 0 776 156 0 15 chrX 3962594 3962729 -158637201 + FLAM_C SINE Alu 1 133 -10 1590 160 0 70 chrX 3963751 3964051 -158635879 + AluJo SINE Alu 1 279 -33 357 24 0 0 chrX 3965376 3965418 -158634512 + (TA)n Simple_repeat Simple_repeat 1 42 0 780 130 22 29 chrX 3965528 3965666 -158634264 - AluJo SINE Alu -175 137 1 280 85 21 0 chrX 3966617 3966664 -158633266 - MADE1 DNA Mariner 0 80 33 207 100 0 0 chrX 3966924 3966954 -158632976 + (A)n Simple_repeat Simple_repeat 1 30 0 286 179 0 0 chrX 3967733 3967789 -158632141 + L1MA9 LINE L1 5943 5998 -191 1160 194 48 39 chrX 3967863 3968023 -158631907 + L1MA9 LINE L1 5995 6152 -160 459 0 0 0 chrX 3968023 3968074 -158631856 + (CA)n Simple_repeat Simple_repeat 1 51 0 1160 194 48 39 chrX 3968074 3968094 -158631836 + L1MA9 LINE L1 6152 6170 -142 2473 169 50 67 chrX 3968094 3968717 -158631213 - LTR9 LTR ERV1 0 612 1 1160 194 48 39 chrX 3968717 3968845 -158631085 + L1MA9 LINE L1 6170 6307 -5 23 0 0 0 chrX 3969392 3969415 -158630515 + AT_rich Low_complexity Low_complexity 1 23 0 723 118 31 16 chrX 3969525 3969762 -158630168 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 868 139 10 19 chrX 3969800 3970117 -158629813 + (TCTA)n Simple_repeat Simple_repeat 1 313 0 467 182 7 26 chrX 3970140 3970294 -158629636 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 323 179 8 12 chrX 3970302 3970425 -158629505 - Tigger2 DNA MER2_type 0 2718 2554 * 772 208 19 51 chrX 3970424 3970640 -158629290 - Tigger2 DNA MER2_type -2508 210 2 696 285 112 19 chrX 3971189 3971456 -158628474 - MLT1E LTR MaLR -11 582 291 731 136 32 16 chrX 3971952 3972077 -158627853 + FLAM_A SINE Alu 16 142 0 334 267 159 11 chrX 3972147 3972323 -158627607 + L1ME3A LINE L1 5311 5512 -650 1814 179 0 0 chrX 3972356 3972668 -158627262 + AluJo SINE Alu 1 312 0 470 308 77 15 chrX 3972673 3972946 -158626984 + L1ME3A LINE L1 5594 5883 -287 2539 59 3 0 chrX 3972953 3973258 -158626672 + AluY SINE Alu 1 306 -5 236 264 33 41 chrX 3973302 3973423 -158626507 + L1ME3A LINE L1 6046 6165 -5 2272 88 3 7 chrX 3973861 3974166 -158625764 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 3976168 3976564 -158623366 - L1PA16 LINE L1 -45 6121 5688 2377 90 10 0 chrX 3976564 3976865 -158623065 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 3976865 3976911 -158623019 - L1PA16 LINE L1 -478 5688 5647 23 86 0 0 chrX 3976936 3976994 -158622936 + AT_rich Low_complexity Low_complexity 1 58 0 571 213 0 0 chrX 3977843 3977951 -158621979 - AluJb SINE Alu -23 289 182 25 0 0 0 chrX 3977962 3977987 -158621943 + AT_rich Low_complexity Low_complexity 1 25 0 729 160 8 0 chrX 3978050 3978175 -158621755 + MER57A LTR ERV1 2 127 -276 269 239 11 54 chrX 3978339 3978431 -158621499 + (CATA)n Simple_repeat Simple_repeat 4 91 0 236 322 0 0 chrX 3978431 3978521 -158621409 - L1MC4 LINE L1 -1339 6703 6614 346 194 0 60 chrX 3978526 3978849 -158621081 + (TA)n Simple_repeat Simple_repeat 1 303 0 219 226 9 17 chrX 3978887 3978940 -158620990 + (TA)n Simple_repeat Simple_repeat 1 53 -61 2601 131 5 38 chrX 3978940 3979389 -158620541 - Tigger2a DNA MER2_type 0 434 1 219 226 9 17 chrX 3979389 3979450 -158620480 + (TA)n Simple_repeat Simple_repeat 53 114 0 282 179 0 0 chrX 3979886 3979942 -158619988 + (TG)n Simple_repeat Simple_repeat 2 57 0 21 89 0 0 chrX 3980131 3980187 -158619743 + AT_rich Low_complexity Low_complexity 1 56 0 370 256 24 18 chrX 3980280 3980444 -158619486 + (TA)n Simple_repeat Simple_repeat 1 165 0 341 273 16 44 chrX 3980383 3980566 -158619364 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 298 275 158 18 chrX 3981092 3981263 -158618667 - MIR SINE MIR -40 222 28 2198 105 7 0 chrX 3981636 3981931 -158617999 - AluSx SINE Alu -15 297 1 300 27 0 0 chrX 3982381 3982418 -158617512 + (CA)n Simple_repeat Simple_repeat 2 38 0 1508 170 11 11 chrX 3982448 3982754 -158617176 - AluSx SINE Alu 0 306 1 400 122 22 78 chrX 3982858 3983038 -158616892 + (TTATA)n Simple_repeat Simple_repeat 1 170 0 27 49 0 0 chrX 3983044 3983085 -158616845 + AT_rich Low_complexity Low_complexity 1 41 0 219 200 29 0 chrX 3983150 3983220 -158616710 + (TA)n Simple_repeat Simple_repeat 1 72 0 35 54 0 0 chrX 3983220 3983276 -158616654 + AT_rich Low_complexity Low_complexity 1 56 0 475 260 94 43 chrX 3983435 3983467 -158616463 - MLT1G LTR MaLR -2 588 559 1376 193 128 21 chrX 3983467 3983850 -158616080 - MSTB LTR MaLR 0 426 3 475 260 94 43 chrX 3983850 3984052 -158615878 - MLT1G LTR MaLR -31 559 342 262 245 170 68 chrX 3984045 3984192 -158615738 - MLT1G LTR MaLR -332 223 62 * 1636 175 3 29 chrX 3984193 3984501 -158615429 - AluJo SINE Alu -7 305 6 1675 177 3 23 chrX 3985063 3985368 -158614562 - AluJb SINE Alu -13 299 1 568 0 65 0 chrX 3986134 3986211 -158613719 + (TTTTA)n Simple_repeat Simple_repeat 2 83 0 1596 175 0 34 chrX 3986213 3986505 -158613425 - AluJo SINE Alu -30 282 1 209 222 0 0 chrX 3986544 3986589 -158613341 + MIR SINE MIR 218 262 0 22 0 0 0 chrX 3986740 3986762 -158613168 + AT_rich Low_complexity Low_complexity 1 22 0 2137 136 21 42 chrX 3987527 3987909 -158612021 - THE1C LTR MaLR -1 374 1 223 236 0 0 chrX 3988200 3988255 -158611675 + (TG)n Simple_repeat Simple_repeat 2 56 0 262 333 14 14 chrX 3989232 3989379 -158610551 - MIR3 SINE MIR -11 197 51 269 116 23 0 chrX 3989900 3989943 -158609987 + MLT1D LTR MaLR 6 49 -456 253 213 43 0 chrX 3989944 3989991 -158609939 + MLT1D LTR MaLR 1 49 -456 261 163 23 0 chrX 3989998 3990041 -158609889 + MLT1D LTR MaLR 7 50 -455 285 140 40 40 chrX 3990042 3990092 -158609838 + MLT1D LTR MaLR 1 50 -455 308 143 20 0 chrX 3990093 3990142 -158609788 + MLT1D LTR MaLR 1 50 -455 298 189 19 0 chrX 3990143 3990196 -158609734 + MLT1D LTR MaLR 1 54 -451 255 167 24 0 chrX 3990189 3990231 -158609699 + MLT1D LTR MaLR 8 50 -455 * 285 116 47 0 chrX 3990232 3990275 -158609655 + MLT1D LTR MaLR 1 45 -460 263 240 20 0 chrX 3990282 3990332 -158609598 + MLT1D LTR MaLR 1 51 -454 300 213 107 0 chrX 3990332 3990407 -158609523 + MLT1D LTR MaLR 1 83 -422 1691 222 96 14 chrX 3990509 3990853 -158609077 + MLT1D LTR MaLR 43 430 -75 3028 93 7 0 chrX 3990853 3991271 -158608659 - L1PA13 LINE L1 0 6163 5743 1691 222 96 14 chrX 3991271 3991354 -158608576 + MLT1D LTR MaLR 430 505 0 510 191 44 7 chrX 3991960 3992096 -158607834 + MER96B DNA MER1_type? 81 221 -196 24 0 0 0 chrX 3992194 3992218 -158607712 + AT_rich Low_complexity Low_complexity 1 24 0 1562 163 0 23 chrX 3992221 3992445 -158607485 - AluSx SINE Alu -53 259 40 5118 76 3 39 chrX 3992445 3993159 -158606771 + LTR12 LTR ERV1 1 688 0 1562 163 0 23 chrX 3993159 3993192 -158606738 - AluSx SINE Alu -272 40 8 * 2038 211 48 52 chrX 3993189 3993591 -158606339 - L1MB7 LINE L1 -61 6123 5724 1406 33 33 0 chrX 3993591 3993773 -158606157 - L1MA1 LINE L1 -4 6298 6111 2038 211 48 52 chrX 3993773 3994037 -158605893 - L1MB7 LINE L1 -460 5724 5460 233 167 0 0 chrX 3994083 3994131 -158605799 - L1M4c LINE L1 -3948 2698 2651 1542 232 64 127 chrX 3994199 3995282 -158604648 - L1M4c LINE L1 -5512 1030 16 1657 201 3 23 chrX 3996239 3996548 -158603382 + AluJb SINE Alu 1 303 -9 505 226 34 45 chrX 3997076 3997253 -158602677 + MER96B DNA MER1_type? 1 175 -242 2559 52 3 0 chrX 3997324 3997631 -158602299 - AluY SINE Alu -3 308 1 961 245 21 10 chrX 3997794 3998152 -158601778 + MLT1B LTR MaLR 1 343 -124 911 261 26 15 chrX 3998156 3998428 -158601502 + MLT1C LTR MaLR 193 467 0 1599 155 143 103 chrX 3999292 3999788 -158600142 - L1MB3 LINE L1 -7 6176 5661 572 158 18 26 chrX 3999788 3999884 -158600046 - AluJo/FRAM SINE Alu 0 312 216 1478 156 3 90 chrX 3999884 4000185 -158599745 - AluJb SINE Alu -37 275 1 572 158 18 26 chrX 4000185 4000202 -158599728 - AluJo/FRAM SINE Alu -96 216 200 253 173 19 0 chrX 4000202 4000254 -158599676 - L1MB3 LINE L1 -647 5658 5606 369 119 104 0 chrX 4000254 4000321 -158599609 - MADE1 DNA Mariner 0 80 7 791 261 20 5 chrX 4000652 4000855 -158599075 - MER58A DNA MER1_type 0 224 19 807 204 91 72 chrX 4001198 4001605 -158598325 - MLT2B1 LTR ERVL 0 520 1 1274 84 6 12 chrX 4001641 4001807 -158598123 - AluSp SINE Alu -16 297 133 545 228 35 17 chrX 4001914 4002078 -158597852 + MLT1A1 LTR MaLR 216 365 0 1349 186 48 35 chrX 4002218 4002354 -158597576 + MER77 LTR ERV1 274 407 -198 2257 94 0 17 chrX 4002354 4002653 -158597277 + AluY SINE Alu 1 294 -17 1349 186 48 35 chrX 4002653 4002827 -158597103 + MER77 LTR ERV1 407 588 -17 830 239 0 0 chrX 4003266 4003429 -158596501 - FRAM SINE Alu -16 160 1 2009 146 31 29 chrX 4004387 4004772 -158595158 - MLT1B LTR MaLR -4 386 1 2114 113 49 0 chrX 4004916 4005200 -158594730 + AluSx SINE Alu 1 298 -14 1714 167 31 7 chrX 4005344 4005631 -158594299 + AluJo SINE Alu 1 294 -18 691 142 15 8 chrX 4005631 4005765 -158594165 + GA-rich Low_complexity Low_complexity 1 135 0 574 254 86 10 chrX 4005987 4006184 -158593746 + MER20 DNA MER1_type 4 215 -4 23 0 0 0 chrX 4007286 4007309 -158592621 + AT_rich Low_complexity Low_complexity 1 23 0 2679 158 13 22 chrX 4007447 4007732 -158592198 - Tigger4(Zombi) DNA MER2_type -55 2676 2397 1875 164 27 6 chrX 4007732 4008062 -158591868 + MER1B DNA MER1_type 1 337 0 2679 158 13 22 chrX 4008062 4008314 -158591616 - Tigger4(Zombi) DNA MER2_type -334 2397 2144 1753 139 13 3 chrX 4008320 4008621 -158591309 - Tigger4(Zombi) DNA MER2_type -2159 572 269 1040 122 109 0 chrX 4008632 4008788 -158591142 - AluSg/x SINE Alu 0 312 140 2217 120 0 0 chrX 4008790 4009090 -158590840 - AluSx SINE Alu -12 300 1 1508 135 7 52 chrX 4009090 4009378 -158590552 - Tigger4(Zombi) DNA MER2_type -2455 276 2 672 124 80 7 chrX 4009776 4009913 -158590017 - L1M LINE L1 -889 5411 5265 308 261 0 0 chrX 4009932 4009997 -158589933 + MER2 DNA MER2_type 280 344 -1 1650 202 70 30 chrX 4011963 4012209 -158587721 - MER50 LTR ERV1 0 734 462 2418 114 28 17 chrX 4012209 4012569 -158587361 + THE1B LTR MaLR 1 364 0 1650 202 70 30 chrX 4012569 4012753 -158587177 - MER50 LTR ERV1 -272 462 287 2962 146 60 86 chrX 4012787 4013459 -158586471 + LTR8A LTR ERV1 1 654 -73 2055 136 0 23 chrX 4013459 4013768 -158586162 - AluSx SINE Alu -10 302 1 2962 146 60 86 chrX 4013768 4013841 -158586089 + LTR8A LTR ERV1 654 727 0 2014 131 3 0 chrX 4014175 4014492 -158585438 + AluSx SINE Alu 1 318 0 423 0 0 0 chrX 4015417 4015464 -158584466 + (CA)n Simple_repeat Simple_repeat 2 48 0 2351 57 3 0 chrX 4015710 4016038 -158583892 - AluY SINE Alu 0 329 1 22 35 0 0 chrX 4016192 4016221 -158583709 + AT_rich Low_complexity Low_complexity 1 29 0 197 33 33 0 chrX 4016313 4016343 -158583587 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1487 176 3 83 chrX 4016352 4016665 -158583265 - AluJb SINE Alu -24 288 1 23 33 0 0 chrX 4016702 4016732 -158583198 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chrX 4018822 4018864 -158581066 + AT_rich Low_complexity Low_complexity 1 42 0 273 119 0 0 chrX 4019562 4019604 -158580326 + (CA)n Simple_repeat Simple_repeat 2 43 0 563 175 24 0 chrX 4019789 4020008 -158579922 + CT-rich Low_complexity Low_complexity 1 224 0 364 186 32 8 chrX 4020043 4020167 -158579763 + CT-rich Low_complexity Low_complexity 2 128 0 2420 203 30 16 chrX 4020200 4020720 -158579210 - MLT2B3 LTR ERVL -35 512 1 2236 70 0 7 chrX 4020720 4021031 -158578899 + AluY SINE Alu 1 309 0 21 0 0 0 chrX 4021524 4021545 -158578385 + AT_rich Low_complexity Low_complexity 1 21 0 702 154 0 0 chrX 4022517 4022621 -158577309 - FRAM SINE Alu -36 140 37 1349 196 0 41 chrX 4022628 4022898 -158577032 - AluJo SINE Alu -24 288 30 294 375 71 6 chrX 4022960 4023128 -158576802 - MIR SINE MIR -37 225 47 1282 221 46 14 chrX 4023439 4023810 -158576120 + L1MC3 LINE L1 7026 7408 -377 1690 135 3 30 chrX 4023810 4024165 -158575765 - MER4A LTR ERV1 0 664 261 239 116 47 0 chrX 4024165 4024208 -158575722 - MER4A LTR ERV1 -566 98 54 249 263 13 0 chrX 4024235 4024311 -158575619 + L1MC3 LINE L1 7405 7481 -304 833 166 11 17 chrX 4025648 4025970 -158573960 + CT-rich Low_complexity Low_complexity 1 320 0 1014 176 0 6 chrX 4026213 4026372 -158573558 + AluJb SINE Alu 129 286 -26 456 213 110 55 chrX 4027482 4027646 -158572284 + MER58B DNA MER1_type 168 340 -1 318 106 0 0 chrX 4027906 4027953 -158571977 + (TA)n Simple_repeat Simple_repeat 1 47 0 392 329 117 49 chrX 4028033 4029030 -158570900 + L1 LINE L1 4128 5204 -942 1466 185 78 37 chrX 4029471 4029854 -158570076 - LTR2B LTR ERV1 -58 432 34 950 119 34 17 chrX 4029933 4030110 -158569820 + AluSq SINE Alu 5 184 -129 2376 52 17 3 chrX 4080385 4080675 -158519255 - AluY SINE Alu -17 294 1 32 43 0 0 chrX 4081276 4081322 -158518608 + AT_rich Low_complexity Low_complexity 1 46 0 2202 96 24 0 chrX 4081968 4082094 -158517836 + AluSx SINE Alu 1 123 -189 189 0 0 0 chrX 4082094 4082115 -158517815 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2202 96 24 0 chrX 4082115 4082281 -158517649 + AluSx SINE Alu 123 300 -12 22 0 0 0 chrX 4082574 4082596 -158517334 + AT_rich Low_complexity Low_complexity 1 22 0 347 236 157 0 chrX 4082726 4082866 -158517064 - Charlie2a DNA MER1_type -1782 1080 919 21 57 0 0 chrX 4082991 4083026 -158516904 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chrX 4083435 4083461 -158516469 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 22 0 0 0 chrX 4083522 4083544 -158516386 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chrX 4083708 4083759 -158516171 + AT_rich Low_complexity Low_complexity 1 51 0 28260 39 39 1 chrX 4084019 4087574 -158512356 + L1P LINE L1 3 3694 -2452 288 0 0 0 chrX 4087693 4087725 -158512205 + (TATG)n Simple_repeat Simple_repeat 1 32 0 873 105 35 0 chrX 4087725 4087896 -158512034 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 189 74 0 0 chrX 4087928 4087955 -158511975 + (TC)n Simple_repeat Simple_repeat 2 28 0 427 133 0 42 chrX 4087960 4088080 -158511850 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 421 293 33 13 chrX 4089443 4089593 -158510337 + MIR SINE MIR 107 259 -3 190 107 47 67 chrX 4089632 4089781 -158510149 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 33 25 0 0 chrX 4090352 4090392 -158509538 + AT_rich Low_complexity Low_complexity 1 40 0 213 121 0 0 chrX 4091057 4091090 -158508840 + (T)n Simple_repeat Simple_repeat 1 33 0 465 19 0 0 chrX 4091810 4091864 -158508066 + (TG)n Simple_repeat Simple_repeat 1 54 0 1617 161 3 39 chrX 4091915 4092121 -158507809 - AluJo SINE Alu -18 294 101 2421 107 27 3 chrX 4092121 4092487 -158507443 + THE1C LTR MaLR 1 375 0 1617 161 3 39 chrX 4092487 4092585 -158507345 - AluJo SINE Alu -211 101 1 1067 70 23 12 chrX 4093088 4093259 -158506671 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 720 89 16 8 chrX 4093373 4093497 -158506433 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 1998 182 9 24 chrX 4093981 4094111 -158505819 + MLT2B2 LTR ERVL 1 132 -383 2373 118 14 11 chrX 4094111 4094474 -158505456 + THE1B LTR MaLR 1 364 0 1998 182 9 24 chrX 4094474 4094783 -158505147 + MLT2B2 LTR ERVL 132 481 -34 427 221 16 0 chrX 4094807 4094934 -158504996 + (TCCA)n Simple_repeat Simple_repeat 1 129 0 2069 153 32 8 chrX 4095621 4095994 -158503936 + MLT1B LTR MaLR 1 382 -8 24 0 0 0 chrX 4097015 4097039 -158502891 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 4097851 4097879 -158502051 + AT_rich Low_complexity Low_complexity 1 28 0 1538 160 9 0 chrX 4097881 4098112 -158501818 - AluJo SINE Alu -75 237 5 986 182 0 23 chrX 4098626 4098802 -158501128 - AluJ SINE Alu 0 312 141 710 184 102 20 chrX 4098839 4098862 -158501068 - AluJ SINE Alu -153 159 139 189 0 0 0 chrX 4098862 4098883 -158501047 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 710 184 102 20 chrX 4098883 4099006 -158500924 - AluJ SINE Alu -173 139 1 5426 45 1 0 chrX 4099419 4100080 -158499850 + L1PA5 LINE L1 5486 6147 -7 2626 116 3 0 chrX 4101467 4101829 -158498101 + THE1B LTR MaLR 1 363 -1 1422 178 21 0 chrX 4101866 4102147 -158497783 + L1PB4 LINE L1 5868 6154 -2 25 65 0 0 chrX 4102154 4102200 -158497730 + AT_rich Low_complexity Low_complexity 1 46 0 2029 123 0 7 chrX 4102363 4102663 -158497267 + AluJb SINE Alu 1 298 -14 840 157 40 0 chrX 4102791 4103063 -158496867 - L1MA5A LINE L1 -5 6292 5961 2259 113 0 0 chrX 4103063 4103373 -158496557 - AluSq SINE Alu -3 310 1 840 157 40 0 chrX 4103373 4103423 -158496507 - L1MA5A LINE L1 -336 5961 5914 2622 174 8 23 chrX 4103451 4103967 -158495963 - L1PA16 LINE L1 -2 6164 5657 2403 164 54 5 chrX 4104184 4104611 -158495319 - MER83 LTR ERV1 0 448 1 1484 186 10 10 chrX 4105154 4105450 -158494480 - AluJb SINE Alu -10 302 7 26 0 0 0 chrX 4105836 4105862 -158494068 + AT_rich Low_complexity Low_complexity 1 26 0 1655 212 51 36 chrX 4106462 4106637 -158493293 - L1MD1 LINE L1 0 6242 6071 1965 140 140 8 chrX 4106637 4107015 -158492915 - MSTA LTR MaLR 0 428 1 1655 212 51 36 chrX 4107015 4107311 -158492619 - L1MD1 LINE L1 -171 6071 5764 1816 167 3 15 chrX 4107472 4107807 -158492123 - MER47A DNA MER2_type 0 366 36 22 0 0 0 chrX 4108041 4108063 -158491867 + AT_rich Low_complexity Low_complexity 1 22 0 1520 162 49 25 chrX 4108226 4108510 -158491420 - AluJo SINE Alu -21 291 1 252 282 71 26 chrX 4108511 4108665 -158491265 - MIR SINE MIR -62 146 10 180 147 0 59 chrX 4108659 4108693 -158491237 + MER5B DNA MER1_type 78 109 -69 * 331 283 232 0 chrX 4108776 4108914 -158491016 + MER5A DNA MER1_type 13 182 -7 2038 171 16 5 chrX 4109171 4109557 -158490373 + MLT1B LTR MaLR 1 390 0 186 43 0 0 chrX 4110375 4110398 -158489532 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1443 187 60 18 chrX 4110408 4110691 -158489239 - AluJb SINE Alu -17 295 1 1413 176 87 13 chrX 4110913 4111225 -158488705 - MER44D DNA MER2_type 0 609 5 1005 148 18 0 chrX 4114418 4114587 -158485343 + AluSg/x SINE Alu 111 282 -28 28 48 0 0 chrX 4114593 4114635 -158485295 + AT_rich Low_complexity Low_complexity 1 42 0 1024 228 94 22 chrX 4114851 4115171 -158484759 + MER2 DNA MER2_type 1 343 -1 1570 147 26 23 chrX 4115743 4116049 -158483881 - MLT1B LTR MaLR -83 307 1 378 0 0 0 chrX 4116114 4116156 -158483774 + (CA)n Simple_repeat Simple_repeat 2 43 0 1808 82 4 0 chrX 4116212 4116443 -158483487 - AluSp SINE Alu -17 296 65 1356 203 41 24 chrX 4117279 4117570 -158482360 - AluJo SINE Alu -5 297 2 22 35 0 0 chrX 4117840 4117869 -158482061 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 4117976 4117997 -158481933 + AT_rich Low_complexity Low_complexity 1 21 0 218 96 0 58 chrX 4118065 4118117 -158481813 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 572 292 17 43 chrX 4118446 4118679 -158481251 - MLT1E2 LTR MaLR -8 618 392 1255 129 224 11 chrX 4118699 4118962 -158480968 - MER47A DNA MER2_type -28 338 20 467 281 45 41 chrX 4118962 4119229 -158480701 - MLT1E2 LTR MaLR -239 387 120 2374 263 146 37 chrX 4119267 4120525 -158479405 + L1MD1 LINE L1 210 1605 -4935 1926 210 24 118 chrX 4120626 4120992 -158478938 + L1PA16 LINE L1 5499 5767 -399 414 100 0 0 chrX 4120992 4121052 -158478878 + (TA)n Simple_repeat Simple_repeat 1 60 0 1926 210 24 118 chrX 4121052 4121395 -158478535 + L1PA16 LINE L1 5767 6141 -25 1869 220 48 41 chrX 4121404 4121865 -158478065 + L1MD1 LINE L1 5374 5830 -806 1630 193 13 10 chrX 4121865 4122165 -158477765 + AluJo SINE Alu 2 302 -10 1869 220 48 41 chrX 4122165 4122560 -158477370 + L1MD1 LINE L1 5830 6220 -416 485 171 77 0 chrX 4122560 4122677 -158477253 + L1MD1 LINE L1 6500 6625 -11 1936 164 3 0 chrX 4122858 4123163 -158476767 - AluJb SINE Alu -6 306 1 229 289 70 26 chrX 4123431 4123545 -158476385 - MIR SINE MIR -32 230 112 731 130 41 0 chrX 4124876 4125045 -158474885 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 1961 178 113 10 chrX 4125084 4125501 -158474429 - MLT2B1 LTR ERVL -60 460 1 276 307 32 30 chrX 4125829 4125976 -158473954 - MIR SINE MIR -67 141 12 2173 106 3 10 chrX 4126738 4127031 -158472899 - AluSp SINE Alu -22 291 1 1781 284 62 110 chrX 4127056 4127668 -158472262 - L1MC3 LINE L1 0 7785 7246 301 246 0 0 chrX 4127668 4127737 -158472193 + L1MA2 LINE L1 6227 6295 -9 1781 284 62 110 chrX 4127737 4128213 -158471717 - L1MC3 LINE L1 -539 7246 6749 472 163 38 22 chrX 4128476 4128790 -158471140 + (TCTA)n Simple_repeat Simple_repeat 1 319 0 333 323 84 21 chrX 4129064 4129349 -158470581 - L1M4 LINE L1 -2461 3685 3383 23 0 0 0 chrX 4129378 4129401 -158470529 + AT_rich Low_complexity Low_complexity 1 23 0 197 132 26 0 chrX 4129468 4129506 -158470424 + CT-rich Low_complexity Low_complexity 2 40 0 303 28 0 0 chrX 4130292 4130328 -158469602 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 366 23 0 0 chrX 4130327 4130370 -158469560 + (TC)n Simple_repeat Simple_repeat 1 43 0 304 197 7 148 chrX 4130538 4130680 -158469250 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 1677 126 90 44 chrX 4130666 4130791 -158469139 + Tigger3(Golem) DNA MER2_type 2285 2403 -626 1707 195 3 3 chrX 4130791 4131118 -158468812 + AluJo SINE Alu 1 312 0 1677 126 90 44 chrX 4131118 4131381 -158468549 + Tigger3(Golem) DNA MER2_type 2403 2691 -338 360 188 0 0 chrX 4131605 4131685 -158468245 + L1MEc LINE L1 2177 2256 -4140 497 308 44 56 chrX 4131720 4132058 -158467872 + L1MEc LINE L1 2255 2588 -3627 640 212 9 0 chrX 4132072 4132301 -158467629 + GA-rich Low_complexity Low_complexity 1 231 0 587 219 20 9 chrX 4132333 4132685 -158467245 + GA-rich Low_complexity Low_complexity 1 356 0 2362 166 2 5 chrX 4133628 4134039 -158465891 + MER66B LTR ERV1 1 410 -76 431 298 31 31 chrX 4134621 4134782 -158465148 - MER5A DNA MER1_type -27 162 2 1873 147 3 13 chrX 4134896 4135209 -158464721 + AluSx SINE Alu 1 310 -2 3018 190 11 54 chrX 4135331 4135551 -158464379 + LTR51 LTR ERV1 1 229 -442 2125 116 0 3 chrX 4135551 4135869 -158464061 - AluSx SINE Alu 0 317 1 3018 190 11 54 chrX 4135869 4136347 -158463583 + LTR51 LTR ERV1 229 670 -1 2516 56 0 3 chrX 4136548 4136852 -158463078 + AluY SINE Alu 3 305 -6 2401 195 27 63 chrX 4136934 4137569 -158462361 - LTR9 LTR ERV1 0 612 1 1937 232 24 13 chrX 4137744 4138206 -158461724 + LTR24 LTR ERV1 1 467 0 1884 149 3 29 chrX 4138225 4138534 -158461396 - AluJo SINE Alu -11 301 1 2054 125 76 15 chrX 4138827 4139170 -158460760 + THE1B LTR MaLR 1 364 0 230 136 45 45 chrX 4139648 4139714 -158460216 + L1MA9 LINE L1 6239 6304 -8 1619 110 195 23 chrX 4140832 4141140 -158458790 - MER4A LTR ERV1 -43 621 261 485 155 21 10 chrX 4141140 4141237 -158458693 - MER4A LTR ERV1 -566 98 1 233 308 33 11 chrX 4142186 4142277 -158457653 + MIR SINE MIR 35 127 -135 1905 129 42 58 chrX 4142630 4143011 -158456919 - THE1C LTR MaLR 0 375 1 781 219 26 53 chrX 4143178 4143780 -158456150 + MER4C LTR ERV1 1 693 -6 208 299 103 10 chrX 4145201 4145298 -158454632 - MER5A DNA MER1_type -77 112 7 440 304 131 6 chrX 4145312 4145480 -158454450 - MER5A DNA MER1_type 0 189 1 199 316 127 0 chrX 4145496 4145575 -158454355 - MER5B DNA MER1_type 0 178 90 2267 186 20 40 chrX 4145578 4146133 -158453797 - L1PA16 LINE L1 -2 6164 5621 3672 205 27 64 chrX 4146248 4147292 -158452638 - L1PA16 LINE L1 -784 5362 4358 195 333 0 0 chrX 4147308 4147371 -158452559 + MER5B DNA MER1_type 115 177 -1 493 219 5 10 chrX 4147944 4148146 -158451784 + CT-rich Low_complexity Low_complexity 1 200 0 824 185 0 6 chrX 4148159 4148332 -158451598 + CT-rich Low_complexity Low_complexity 3 174 0 221 284 86 12 chrX 4148336 4148417 -158451513 + MIR SINE MIR 108 194 -68 543 185 21 35 chrX 4149782 4150109 -158449821 + CT-rich Low_complexity Low_complexity 1 322 0 251 219 21 31 chrX 4150251 4150347 -158449583 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 286 141 13 26 chrX 4150603 4150646 -158449284 + (TAGA)n Simple_repeat Simple_repeat 1 44 -33 2217 72 27 14 chrX 4150646 4150938 -158448992 + AluSx SINE Alu 11 306 -6 286 141 13 26 chrX 4150938 4150972 -158448958 + (TAGA)n Simple_repeat Simple_repeat 44 77 0 8727 27 2 1 chrX 4151476 4153292 -158446638 - L1PA2 LINE L1 -5 6150 4335 639 160 25 15 chrX 4153424 4153590 -158446340 + CT-rich Low_complexity Low_complexity 1 196 -32 201 39 0 0 chrX 4153590 4153616 -158446314 + (TTG)n Simple_repeat Simple_repeat 2 27 0 639 160 25 15 chrX 4153616 4153650 -158446280 + CT-rich Low_complexity Low_complexity 196 228 0 349 123 0 18 chrX 4154959 4155012 -158444918 - AluJo SINE Alu -12 290 239 1459 219 156 72 chrX 4155012 4155212 -158444718 + LTR1 LTR ERV1 1 183 -602 246 62 0 0 chrX 4155212 4155244 -158444686 + (CA)n Simple_repeat Simple_repeat 1 32 0 1459 219 156 72 chrX 4155244 4155766 -158444164 + LTR1 LTR ERV1 183 784 -1 1388 163 0 48 chrX 4155766 4156017 -158443913 - AluJo SINE Alu -70 242 4 531 227 25 81 chrX 4156162 4156361 -158443569 + MER106B DNA MER1_type 1 210 -849 1504 184 12 70 chrX 4156361 4156692 -158443238 + AluJb SINE Alu 1 312 0 531 227 25 81 chrX 4156692 4156721 -158443209 + MER106B DNA MER1_type 210 1043 -16 195 204 0 0 chrX 4157043 4157092 -158442838 + (TA)n Simple_repeat Simple_repeat 1 49 0 2750 164 15 33 chrX 4157227 4157768 -158442162 + LTR26B LTR ERV1 1 531 0 257 320 20 0 chrX 4158745 4158845 -158441085 + MLT1J LTR MaLR 80 181 -330 1828 208 65 114 chrX 4159265 4159638 -158440292 + LTR8A LTR ERV1 1 320 -407 2431 118 5 18 chrX 4159638 4160018 -158439912 + THE1C LTR MaLR 1 375 0 1828 208 65 114 chrX 4160018 4160407 -158439523 + LTR8A LTR ERV1 320 726 -1 324 270 10 0 chrX 4160546 4160646 -158439284 + MLT1I LTR MaLR 309 409 0 432 277 32 26 chrX 4160795 4160950 -158438980 - LTR16A1 LTR ERVL -4 453 298 315 0 0 0 chrX 4162271 4162306 -158437624 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 4162536 4162567 -158437363 + AT_rich Low_complexity Low_complexity 1 31 0 286 247 37 0 chrX 4163122 4163203 -158436727 + (TA)n Simple_repeat Simple_repeat 2 85 0 31 44 0 0 chrX 4163215 4163260 -158436670 + AT_rich Low_complexity Low_complexity 1 45 0 281 161 0 0 chrX 4163263 4163319 -158436611 - L1PB4 LINE L1 -1 6155 6100 186 236 0 0 chrX 4163324 4163379 -158436551 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 34 55 0 0 chrX 4163548 4163603 -158436327 + AT_rich Low_complexity Low_complexity 1 55 0 494 237 119 0 chrX 4163607 4163725 -158436205 - FLAM_A SINE Alu -1 132 1 920 164 0 7 chrX 4164455 4164607 -158435323 + FRAM SINE Alu 2 152 -14 899 293 86 112 chrX 4164763 4165430 -158434500 + L2 LINE L2 1839 2522 -791 3150 146 10 2 chrX 4165430 4165922 -158434008 + LOR1a LTR ERV1 1 496 -1 899 293 86 112 chrX 4165922 4166071 -158433859 + L2 LINE L2 2522 2673 -640 1982 129 0 14 chrX 4166071 4166401 -158433529 - AluSx SINE Alu 0 326 1 899 293 86 112 chrX 4166401 4167117 -158432813 + L2 LINE L2 2673 3307 -6 2376 82 0 19 chrX 4167721 4168036 -158431894 + AluY SINE Alu 3 311 0 213 65 0 0 chrX 4168089 4168120 -158431810 + (A)n Simple_repeat Simple_repeat 1 31 0 353 284 34 28 chrX 4168122 4168298 -158431632 + L1MC/D LINE L1 5272 5448 -2360 257 291 25 23 chrX 4168534 4168696 -158431234 + L1MC/D LINE L1 5665 5825 -312 180 0 0 0 chrX 4168723 4168743 -158431187 + (TA)n Simple_repeat Simple_repeat 2 21 0 493 311 58 5 chrX 4168743 4168933 -158430997 - MIR SINE MIR -35 227 28 207 0 0 0 chrX 4168971 4168994 -158430936 + (CATATA)n Simple_repeat Simple_repeat 5 27 0 793 159 0 15 chrX 4169009 4169141 -158430789 + FLAM_C SINE Alu 2 131 -2 268 230 10 10 chrX 4169186 4169286 -158430644 + (TA)n Simple_repeat Simple_repeat 1 100 0 447 98 0 130 chrX 4169289 4169381 -158430549 + MADE1 DNA Mariner 1 80 0 30 69 0 0 chrX 4169672 4169730 -158430200 + AT_rich Low_complexity Low_complexity 1 58 0 2285 76 6 31 chrX 4169889 4170206 -158429724 + AluY SINE Alu 1 309 -2 26 0 0 0 chrX 4170206 4170232 -158429698 + AT_rich Low_complexity Low_complexity 1 26 0 244 286 128 23 chrX 4171264 4171397 -158428533 - MIR SINE MIR -42 220 74 1566 151 16 87 chrX 4172601 4172913 -158427017 - AluJo SINE Alu -21 291 2 1055 286 68 52 chrX 4173770 4174578 -158425352 - L1ME3A LINE L1 -94 6076 5255 281 304 99 10 chrX 4174638 4174708 -158425222 - L1ME3A LINE L1 -925 5221 5159 2200 127 30 28 chrX 4174708 4175071 -158424859 + THE1B LTR MaLR 1 364 0 281 304 99 10 chrX 4175071 4175201 -158424729 - L1ME3A LINE L1 -987 5159 5003 244 293 166 13 chrX 4175518 4175675 -158424255 - L1ME3A LINE L1 -2272 3874 3694 * 271 272 128 11 chrX 4175668 4175848 -158424082 - L1M4 LINE L1 -1538 4608 4408 353 270 0 0 chrX 4176191 4176265 -158423665 - MER5A DNA MER1_type -99 90 17 1658 197 0 7 chrX 4176748 4177043 -158422887 + AluJo SINE Alu 3 295 -17 1616 193 0 41 chrX 4177106 4177422 -158422508 - AluJb SINE Alu -8 304 2 883 154 83 12 chrX 4180072 4180241 -158419689 + MER20 DNA MER1_type 34 214 -5 21 36 0 0 chrX 4180750 4180778 -158419152 + AT_rich Low_complexity Low_complexity 1 28 0 2441 153 28 19 chrX 4180779 4181209 -158418721 + Tigger2a DNA MER2_type 1 434 0 1945 155 0 0 chrX 4181235 4181542 -158418388 + AluSx SINE Alu 1 307 0 1448 121 56 0 chrX 4181777 4182026 -158417904 - L1MA4 LINE L1 0 6300 6038 380 341 59 36 chrX 4182869 4183227 -158416703 + L1M4 LINE L1 2480 2845 -3301 1802 149 36 0 chrX 4183255 4183557 -158416373 + AluSq SINE Alu 1 313 0 383 123 0 27 chrX 4183563 4183636 -158416294 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 250 171 24 49 chrX 4183756 4183838 -158416092 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2650 182 34 61 chrX 4183998 4184985 -158414945 + L1MA10 LINE L1 4626 5607 -561 662 147 0 18 chrX 4184985 4185094 -158414836 + FLAM_C SINE Alu 14 120 -23 330 87 0 0 chrX 4185095 4185141 -158414789 + (TA)n Simple_repeat Simple_repeat 1 46 0 3314 178 36 23 chrX 4185145 4185876 -158414054 + L1MA10 LINE L1 5594 6333 -1 410 158 40 0 chrX 4186464 4186540 -158413390 + MADE1 DNA Mariner 2 80 0 24 0 0 0 chrX 4186978 4187002 -158412928 + AT_rich Low_complexity Low_complexity 1 24 0 1341 185 14 42 chrX 4187370 4187538 -158412392 + AluJb SINE Alu 1 159 -153 2048 139 232 34 chrX 4187538 4187978 -158411952 - MER1A DNA MER1_type 0 527 1 1341 185 14 42 chrX 4187978 4188096 -158411834 + AluJb SINE Alu 159 279 -33 213 65 0 0 chrX 4188096 4188127 -158411803 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 266 159 48 28 chrX 4188500 4188645 -158411285 + (TCTA)n Simple_repeat Simple_repeat 2 149 0 23 0 0 0 chrX 4188803 4188826 -158411104 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chrX 4189448 4189480 -158410450 + AT_rich Low_complexity Low_complexity 1 32 0 31 44 0 0 chrX 4189514 4189559 -158410371 + AT_rich Low_complexity Low_complexity 1 45 0 2408 274 102 35 chrX 4190347 4192304 -158407626 + L1MEc LINE L1 638 2686 -3529 561 192 20 20 chrX 4192362 4192508 -158407422 - L1MA10 LINE L1 -7 6327 6182 207 114 0 0 chrX 4192947 4192982 -158406948 + (CA)n Simple_repeat Simple_repeat 2 36 0 1062 171 0 6 chrX 4194350 4194531 -158405399 - AluJb SINE Alu -16 296 117 1641 143 68 8 chrX 4194531 4194797 -158405133 - AluJo SINE Alu -30 282 1 2687 162 83 2 chrX 4195046 4195552 -158404378 + MER44D DNA MER2_type 2 603 -2 4104 100 14 88 chrX 4195575 4196292 -158403638 + MER4A LTR ERV1 1 664 0 932 191 0 0 chrX 4197045 4197207 -158402723 - AluJb SINE Alu -4 308 147 182 105 26 0 chrX 4197469 4197507 -158402423 + T-rich Low_complexity Low_complexity 3 41 0 405 127 14 0 chrX 4197586 4197657 -158402273 - AluS SINE Alu -237 72 1 1890 161 6 19 chrX 4199919 4200235 -158399695 + AluJo SINE Alu 1 312 0 1867 170 120 0 chrX 4201169 4201551 -158398379 - MSTA LTR MaLR 0 428 1 10749 132 16 14 chrX 4201589 4202325 -158397605 - L1PA13 LINE L1 -281 5882 5148 2486 125 5 8 chrX 4202325 4202701 -158397229 + THE1C LTR MaLR 1 375 0 10749 132 16 14 chrX 4202701 4203575 -158396355 - L1PA13 LINE L1 -1015 5148 4269 978 93 0 7 chrX 4203575 4203715 -158396215 - MER85 DNA T2_type 0 139 1 10749 132 16 14 chrX 4203715 4204512 -158395418 - L1PA13 LINE L1 -1894 4269 3475 202 386 26 26 chrX 4204733 4204961 -158394969 - L2 LINE L2 -1357 1957 1730 198 0 0 0 chrX 4205061 4205083 -158394847 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1663 184 36 16 chrX 4206239 4206544 -158393386 + AluSx SINE Alu 2 312 0 2555 242 26 29 chrX 4206942 4207296 -158392634 - MER76 LTR ERV -29 659 306 1793 145 60 33 chrX 4207296 4207661 -158392269 - THE1C LTR MaLR 0 375 1 2555 242 26 29 chrX 4207661 4207967 -158391963 - MER76 LTR ERV -382 306 1 1434 204 3 22 chrX 4208004 4208317 -158391613 + AluJo SINE Alu 1 307 -5 4915 143 35 21 chrX 4208900 4209890 -158390040 + L1PA15 LINE L1 5163 6164 -1 298 201 15 67 chrX 4210294 4210428 -158389502 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 1804 132 3 10 chrX 4210428 4210723 -158389207 + L1PA16 LINE L1 5715 6007 -159 225 224 52 0 chrX 4210722 4210780 -158389150 + L1MD3 LINE L1 6615 6675 -1320 * 1628 143 4 0 chrX 4211637 4211875 -158388055 + AluSx SINE Alu 1 239 -73 189 0 0 0 chrX 4211885 4211906 -158388024 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 530 100 40 0 chrX 4214298 4214398 -158385532 + GA-rich Low_complexity Low_complexity 1 104 0 189 328 28 79 chrX 4214398 4214575 -158385355 - L3 LINE CR1 -25 1552 1385 22 0 0 0 chrX 4214639 4214661 -158385269 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chrX 4214887 4214937 -158384993 + AT_rich Low_complexity Low_complexity 1 50 0 186 351 70 54 chrX 4215126 4215385 -158384545 - L3 LINE CR1 -828 749 487 252 0 0 0 chrX 4215665 4215693 -158384237 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chrX 4216611 4216632 -158383298 + AT_rich Low_complexity Low_complexity 1 21 0 296 316 129 19 chrX 4217616 4217825 -158382105 + L2 LINE L2 1238 1469 -1845 1431 244 37 55 chrX 4217825 4218333 -158381597 - MLT1D LTR MaLR 0 505 7 22 35 0 0 chrX 4219576 4219605 -158380325 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 57 0 chrX 4220376 4220429 -158379501 + MIR SINE MIR 117 172 -90 1688 199 0 0 chrX 4220877 4221164 -158378766 + AluJo SINE Alu 2 288 -24 848 254 55 47 chrX 4221579 4221785 -158378145 - MLT1E LTR MaLR -2 591 381 2775 178 154 13 chrX 4221785 4222420 -158377510 - LTR8A LTR ERV1 -2 725 1 848 254 55 47 chrX 4222420 4222469 -158377461 - MLT1E LTR MaLR -212 381 334 379 329 22 0 chrX 4222530 4222667 -158377263 - MLT1E LTR MaLR -381 212 73 3030 262 103 55 chrX 4222683 4224438 -158375492 + L1MEc LINE L1 2179 4010 -2205 2284 108 0 6 chrX 4224438 4224752 -158375178 + AluSq SINE Alu 1 312 -1 3030 262 103 55 chrX 4224752 4225072 -158374858 + L1MEc LINE L1 4010 4313 -1902 2147 164 47 29 chrX 4225073 4225612 -158374318 + MLT2A2 LTR ERVL 1 554 0 1279 256 116 58 chrX 4225613 4226595 -158373335 + L1MEc LINE L1 4356 5394 -821 * 6053 126 11 14 chrX 4226587 4227518 -158372412 + THE1C-int LTR MaLR 653 1580 0 1823 169 38 22 chrX 4227518 4227884 -158372046 + THE1C LTR MaLR 1 372 -3 255 61 0 0 chrX 4227884 4227917 -158372013 + (CA)n Simple_repeat Simple_repeat 2 34 0 222 267 78 22 chrX 4227917 4228007 -158371923 - MIR SINE MIR -58 204 110 1495 90 4 37 chrX 4228031 4228275 -158371655 - L1MA8 LINE L1 -4 6287 6052 2536 107 3 8 chrX 4228335 4228701 -158371229 - THE1B LTR MaLR 0 364 1 780 184 0 25 chrX 4229532 4229818 -158370112 + GA-rich Low_complexity Low_complexity 1 278 0 629 204 6 17 chrX 4229829 4230010 -158369920 + GA-rich Low_complexity Low_complexity 2 180 0 534 126 32 11 chrX 4230797 4230892 -158369038 + MER4A LTR ERV1 2 98 -566 1628 131 14 78 chrX 4230892 4231259 -158368671 + MER4A LTR ERV1 261 662 -2 2455 62 0 0 chrX 4231532 4231849 -158368081 + AluY SINE Alu 1 317 0 2267 103 3 0 chrX 4232921 4233221 -158366709 - AluSx SINE Alu -11 301 1 3877 158 12 12 chrX 4235556 4236261 -158363669 - MER51C LTR ERV1 -17 623 1 200 225 0 0 chrX 4236572 4236612 -158363318 + MIR SINE MIR 2 41 -221 807 113 0 24 chrX 4236832 4236956 -158362974 + MER4A LTR ERV1 544 664 0 216 217 57 19 chrX 4237212 4237318 -158362612 + (TA)n Simple_repeat Simple_repeat 1 110 0 530 313 106 26 chrX 4237318 4237705 -158362225 - L1MC4a LINE L1 -1880 5928 5511 1703 176 3 23 chrX 4237800 4238102 -158361828 + AluJb SINE Alu 1 296 -16 284 165 39 0 chrX 4238138 4238191 -158361739 + (TA)n Simple_repeat Simple_repeat 1 50 -57 1924 130 55 22 chrX 4238191 4238552 -158361378 + THE1C LTR MaLR 1 373 -2 284 165 39 0 chrX 4238552 4238601 -158361329 + (TA)n Simple_repeat Simple_repeat 50 107 0 1089 211 32 7 chrX 4238929 4239214 -158360716 - MER33 DNA MER1_type -1 323 32 21 0 0 0 chrX 4239821 4239842 -158360088 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chrX 4240782 4240825 -158359105 + AT_rich Low_complexity Low_complexity 1 43 0 194 62 31 0 chrX 4241600 4241632 -158358298 + (TC)n Simple_repeat Simple_repeat 2 34 0 296 245 50 58 chrX 4242282 4242383 -158357547 - MIR SINE MIR -4 258 157 1612 147 125 9 chrX 4242383 4242710 -158357220 + MLT1A1 LTR MaLR 1 365 0 296 245 50 58 chrX 4242710 4242747 -158357183 - MIR SINE MIR -105 157 121 713 184 101 0 chrX 4242961 4243119 -158356811 - L1MA5A LINE L1 -1 6296 6123 887 189 5 16 chrX 4243220 4243410 -158356520 + AluJo SINE Alu 119 306 -6 975 231 72 20 chrX 4243458 4243887 -158356043 + MLT1D LTR MaLR 3 467 0 2258 114 0 0 chrX 4244052 4244359 -158355571 - AluSx SINE Alu -5 307 1 770 269 159 48 chrX 4244533 4244730 -158355200 - L1MD2 LINE L1 -12 6347 6173 201 39 0 0 chrX 4244730 4244756 -158355174 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chrX 4244757 4244777 -158355153 + (GA)n Simple_repeat Simple_repeat 2 21 0 770 269 159 48 chrX 4244777 4244949 -158354981 - L1MD2 LINE L1 -185 6174 5935 * 939 109 7 7 chrX 4244941 4245088 -158354842 + L1MA5A LINE L1 5828 5974 -323 1475 194 14 7 chrX 4245317 4245596 -158354334 + AluJo SINE Alu 1 281 -31 2806 16 0 0 chrX 4246003 4246314 -158353616 + AluYa5 SINE Alu 1 311 0 23 0 0 0 chrX 4246314 4246337 -158353593 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chrX 4246433 4246460 -158353470 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 307 206 31 chrX 4246622 4247068 -158352862 + L2 LINE L2 2446 2969 -345 201 171 24 0 chrX 4247719 4247760 -158352170 + C-rich Low_complexity Low_complexity 2 43 0 359 323 48 42 chrX 4247788 4247977 -158351953 + L2 LINE L2 3123 3312 -1 2006 205 93 58 chrX 4248022 4248759 -158351171 - LTR1B LTR ERV1 0 785 29 2211 158 8 74 chrX 4248870 4249369 -158350561 - LOR1a LTR ERV1 0 497 32 1454 103 0 0 chrX 4250007 4250192 -158349738 + AluSx SINE Alu 1 185 -127 1456 170 7 0 chrX 4250192 4250469 -158349461 + L1MA4 LINE L1 5320 5598 -702 1189 150 0 12 chrX 4250473 4250646 -158349284 + FRAM SINE Alu 1 164 -12 2210 144 17 10 chrX 4250646 4251048 -158348882 + L1MA4 LINE L1 5606 6010 -290 1001 129 13 7 chrX 4251152 4251307 -158348623 - AluJo SINE Alu -76 236 81 2670 125 7 7 chrX 4251307 4251716 -158348214 + LTR9B LTR ERV1 236 644 0 2240 154 64 15 chrX 4251971 4252437 -158347493 + L1MB3 LINE L1 5659 6147 -36 2099 150 49 29 chrX 4252438 4252964 -158346966 - MLT2A2 LTR ERVL 0 554 1 4199 143 33 1 chrX 4253383 4254084 -158345846 - LTR39 LTR ERV1 -60 723 1 250 294 110 46 chrX 4254801 4254910 -158345020 - MER5A DNA MER1_type -53 136 21 821 181 6 0 chrX 4255123 4255300 -158344630 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 297 130 0 0 chrX 4255300 4255346 -158344584 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1016 128 6 0 chrX 4255346 4255426 -158344504 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 1016 128 6 0 chrX 4255426 4255605 -158344325 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 228 231 0 0 chrX 4255703 4255755 -158344175 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 538 141 207 71 chrX 4256457 4256706 -158343224 - MER4C LTR ERV1 -20 445 169 1042 124 54 158 chrX 4256711 4257097 -158342833 - MER4A LTR ERV1 -318 346 1 2660 172 103 48 chrX 4258148 4258835 -158341095 - LTR8A LTR ERV1 0 727 3 345 364 0 0 chrX 4258866 4258995 -158340935 - MIR SINE MIR -6 256 128 540 317 6 0 chrX 4259022 4259186 -158340744 + MLT2F LTR ERVL 432 596 -67 21 36 0 0 chrX 4259431 4259459 -158340471 + AT_rich Low_complexity Low_complexity 1 28 0 3931 123 8 9 chrX 4259591 4259772 -158340158 - MER41B LTR ERV1 0 635 455 1756 157 29 32 chrX 4259772 4260116 -158339814 + MER61A LTR ERV1 1 343 0 3931 123 8 9 chrX 4260116 4260570 -158339360 - MER41B LTR ERV1 -180 455 1 2016 122 0 33 chrX 4261195 4261498 -158338432 + AluSx SINE Alu 14 306 -6 2455 68 0 13 chrX 4262971 4263282 -158336648 + AluY SINE Alu 1 307 -4 186 103 0 0 chrX 4263337 4263366 -158336564 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 187 6 3 chrX 4263373 4263737 -158336193 + MLT1A1 LTR MaLR 1 365 0 233 300 157 33 chrX 4263979 4264189 -158335741 - L2 LINE L2 -597 2717 2482 317 205 0 13 chrX 4264258 4264336 -158335594 - LTR52 LTR ERVL -340 81 5 2439 231 20 38 chrX 4264728 4265038 -158334892 + MER82 DNA MER2_type 1 315 -338 2380 165 68 4 chrX 4265038 4265505 -158334425 + LOR1a LTR ERV1 1 497 0 2439 231 20 38 chrX 4265505 4265857 -158334073 + MER82 DNA MER2_type 315 651 -2 3968 156 13 11 chrX 4266814 4267524 -158332406 - MER50 LTR ERV1 -23 711 1 2676 175 42 43 chrX 4267816 4268166 -158331764 + MER4D LTR ERV1 1 351 -552 258 32 0 0 chrX 4268166 4268197 -158331733 + (TG)n Simple_repeat Simple_repeat 1 31 0 2676 175 42 43 chrX 4268197 4268512 -158331418 + MER4D LTR ERV1 351 665 -238 1902 70 4 15 chrX 4268512 4268785 -158331145 + MER41A LTR ERV1 1 270 -284 254 190 35 0 chrX 4268785 4268843 -158331087 + LTR1B LTR ERV1 767 826 0 * 3532 169 1 29 chrX 4268843 4269121 -158330809 + LTR39 LTR ERV1 152 436 -347 1817 144 0 27 chrX 4269121 4269464 -158330466 - AluSx SINE Alu 0 335 1 3532 169 1 29 chrX 4269464 4269834 -158330096 + LTR39 LTR ERV1 436 783 0 575 255 185 8 chrX 4271588 4271847 -158328083 - MLT1F LTR MaLR 0 542 238 35 126 0 0 chrX 4271910 4272204 -158327726 + AT_rich Low_complexity Low_complexity 1 294 0 219 242 19 32 chrX 4272379 4272536 -158327394 + (TTAAA)n Simple_repeat Simple_repeat 5 159 0 43 115 0 0 chrX 4272542 4272760 -158327170 + AT_rich Low_complexity Low_complexity 1 218 0 302 266 16 38 chrX 4272831 4273015 -158326915 + (TA)n Simple_repeat Simple_repeat 1 180 0 544 186 90 42 chrX 4273015 4273096 -158326834 - L1MB4 LINE L1 -28 6152 6076 2227 161 29 0 chrX 4273096 4273475 -158326455 + MLT1B LTR MaLR 1 390 0 544 186 90 42 chrX 4273475 4273560 -158326370 - L1MB4 LINE L1 -104 6076 5978 1909 104 156 9 chrX 4273790 4274116 -158325814 - THE1C LTR MaLR -1 374 1 376 182 0 107 chrX 4274436 4274491 -158325439 - L1MB4 LINE L1 -202 5978 5941 1738 175 3 17 chrX 4274491 4274782 -158325148 - AluJo SINE Alu -25 287 1 376 182 0 107 chrX 4274782 4274847 -158325083 - L1MB4 LINE L1 -239 5941 5871 424 331 0 18 chrX 4274852 4275018 -158324912 - MLT1F LTR MaLR -378 164 2 198 150 0 0 chrX 4275057 4275097 -158324833 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 2059 122 64 103 chrX 4275184 4275650 -158324280 - LTR47A LTR ERVL 0 452 5 288 312 185 0 chrX 4276338 4276527 -158323403 + L2 LINE L2 2259 2482 -832 545 129 11 0 chrX 4276722 4276815 -158323115 + G-rich Low_complexity Low_complexity 5 98 0 1568 193 3 20 chrX 4276982 4277288 -158322642 + AluJo SINE Alu 1 301 -11 46 45 0 0 chrX 4278359 4278426 -158321504 + AT_rich Low_complexity Low_complexity 1 67 0 1162 123 10 5 chrX 4278571 4278766 -158321164 + L1MA4A LINE L1 6102 6297 -6 497 238 31 21 chrX 4279035 4279228 -158320702 - L1MD3 LINE L1 0 7995 7801 186 350 15 58 chrX 4279336 4279473 -158320457 - MIR SINE MIR -131 131 1 1101 63 0 0 chrX 4280468 4280650 -158319280 + L1PA10 LINE L1 6006 6187 0 342 77 39 0 chrX 4280729 4280781 -158319149 + MLT2A2 LTR ERVL 400 453 0 21 0 0 0 chrX 4281260 4281281 -158318649 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 4281396 4281437 -158318493 + (TA)n Simple_repeat Simple_repeat 2 42 0 1679 174 7 26 chrX 4282125 4282435 -158317495 + AluJo SINE Alu 2 305 -7 234 0 0 0 chrX 4282658 4282684 -158317246 + (TTG)n Simple_repeat Simple_repeat 2 27 0 208 231 0 0 chrX 4283656 4283695 -158316235 + polypurine Low_complexity Low_complexity 2 40 0 483 194 14 14 chrX 4283700 4283839 -158316091 + GA-rich Low_complexity Low_complexity 3 141 0 553 141 0 63 chrX 4283852 4284043 -158315887 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 211 253 30 0 chrX 4284065 4284164 -158315766 + GA-rich Low_complexity Low_complexity 4 105 0 * 314 115 16 0 chrX 4284154 4284215 -158315715 + (GGAGA)n Simple_repeat Simple_repeat 4 65 0 441 0 0 0 chrX 4284531 4284580 -158315350 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 328 309 0 0 chrX 4284616 4284710 -158315220 - MIR SINE MIR -8 254 161 208 191 61 41 chrX 4284710 4284857 -158315073 + (TTATG)n Simple_repeat Simple_repeat 5 154 0 1572 195 76 24 chrX 4284880 4285249 -158314681 + MLT1B LTR MaLR 3 390 0 343 333 5 22 chrX 4285294 4285419 -158314511 - MIR SINE MIR -66 142 21 2060 132 19 29 chrX 4285864 4286243 -158313687 + THE1C LTR MaLR 1 375 0 2922 187 10 84 chrX 4286664 4287056 -158312874 - L1MA7 LINE L1 -9 6282 5979 1954 160 0 3 chrX 4287056 4287368 -158312562 - AluJo SINE Alu -1 311 1 2922 187 10 84 chrX 4287368 4287781 -158312149 - L1MA7 LINE L1 -312 5979 5537 213 108 0 0 chrX 4287784 4287821 -158312109 + (CCA)n Simple_repeat Simple_repeat 1 37 0 758 164 0 0 chrX 4288637 4288759 -158311171 + AluJb SINE Alu 4 125 -187 717 163 12 6 chrX 4289392 4289552 -158310378 + GA-rich Low_complexity Low_complexity 4 164 0 226 277 15 0 chrX 4289579 4289644 -158310286 + (TA)n Simple_repeat Simple_repeat 1 66 0 454 111 14 0 chrX 4289776 4289848 -158310082 - MADE1 DNA Mariner -5 75 3 232 120 40 0 chrX 4289880 4289930 -158310000 + (TA)n Simple_repeat Simple_repeat 2 53 0 577 208 100 0 chrX 4291037 4291157 -158308773 - FLAM_A SINE Alu 0 133 2 2051 123 0 3 chrX 4291995 4292308 -158307622 + AluSx SINE Alu 1 312 0 3778 104 15 74 chrX 4292308 4292877 -158307053 + L1PA13 LINE L1 5524 6048 -115 2563 40 0 0 chrX 4292877 4293173 -158306757 + AluY SINE Alu 1 296 -15 3778 104 15 74 chrX 4293173 4293278 -158306652 + L1PA13 LINE L1 6048 6158 -5 231 245 55 32 chrX 4293534 4293680 -158306250 + MLT1J2 LTR MaLR 64 251 -260 313 253 11 22 chrX 4294962 4295053 -158304877 - L1MC4 LINE L1 -1339 6703 6614 415 191 0 35 chrX 4295115 4295230 -158304700 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 180 176 0 0 chrX 4295258 4295292 -158304638 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 231 265 102 48 chrX 4295874 4296040 -158303890 + HAL1 LINE L1 5 179 -2328 376 205 33 33 chrX 4296281 4296403 -158303527 - L1MA4A LINE L1 -181 6122 6001 360 321 131 30 chrX 4296659 4296896 -158303034 + HAL1 LINE L1 637 897 -1610 693 285 56 3 chrX 4296944 4297228 -158302702 + Charlie1b DNA MER1_type 56 354 -169 2689 80 17 8 chrX 4297437 4297798 -158302132 - THE1B LTR MaLR 0 364 1 232 253 127 0 chrX 4297931 4298010 -158301920 + L1ME4a LINE L1 5937 6025 -96 752 160 35 7 chrX 4298693 4298837 -158301093 - Tigger3b DNA MER2_type -808 423 276 507 223 0 29 chrX 4298839 4298942 -158300988 - Tigger3b DNA MER2_type -1131 100 1 324 194 19 29 chrX 4299162 4299265 -158300665 + (TA)n Simple_repeat Simple_repeat 1 102 0 249 231 0 23 chrX 4299276 4299406 -158300524 + (TA)n Simple_repeat Simple_repeat 2 128 0 751 166 24 11 chrX 4299407 4299667 -158300263 + (TCTA)n Simple_repeat Simple_repeat 1 263 0 491 321 121 25 chrX 4300752 4301116 -158298814 + LTR16A1 LTR ERVL 49 447 -10 1782 168 0 32 chrX 4302693 4303002 -158296928 - AluJb SINE Alu -13 299 1 871 146 0 7 chrX 4303368 4303512 -158296418 + FLAM_C SINE Alu 1 143 0 40 67 0 0 chrX 4303989 4304064 -158295866 + AT_rich Low_complexity Low_complexity 1 75 0 1741 166 0 3 chrX 4305390 4305733 -158294197 - AluSx SINE Alu 0 342 1 956 120 0 0 chrX 4305733 4305866 -158294064 - AluSq/x SINE Alu -177 135 3 393 118 59 0 chrX 4306594 4306662 -158293268 + L1P5 LINE L1 5708 5779 -377 1452 186 14 25 chrX 4308313 4308598 -158291332 - AluJo SINE Alu -30 282 1 552 126 35 14 chrX 4308952 4309095 -158290835 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 247 234 24 6 chrX 4309105 4309272 -158290658 + (TA)n Simple_repeat Simple_repeat 2 171 0 243 294 138 56 chrX 4309364 4309595 -158290335 - MIR SINE MIR -2 260 11 21 0 0 0 chrX 4309880 4309901 -158290029 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chrX 4310954 4310983 -158288947 + (GA)n Simple_repeat Simple_repeat 1 29 0 781 292 70 107 chrX 4311374 4311757 -158288173 + L1ME1 LINE L1 62 413 -5983 2607 97 8 3 chrX 4311757 4312118 -158287812 - THE1B LTR MaLR -1 363 1 781 292 70 107 chrX 4312118 4312378 -158287552 + L1ME1 LINE L1 413 681 -5715 1998 103 33 0 chrX 4312405 4312678 -158287252 - AluSx SINE Alu -30 282 1 410 255 0 0 chrX 4312708 4312810 -158287120 + L1ME1 LINE L1 693 794 -5602 2001 253 69 35 chrX 4312886 4313400 -158286530 + L1ME1 LINE L1 4357 4852 -1383 369 0 0 0 chrX 4313400 4313441 -158286489 + (CA)n Simple_repeat Simple_repeat 2 42 0 2001 253 69 35 chrX 4313441 4314198 -158285732 + L1ME1 LINE L1 4852 5673 -562 * 5437 70 28 8 chrX 4314195 4314949 -158284981 - L1P LINE L1 -2023 4123 3355 * 6019 95 3 9 chrX 4314948 4315832 -158284098 - L1P LINE L1 -3016 3130 2252 9052 73 7 0 chrX 4315832 4317847 -158282083 + L1PA7 LINE L1 4115 6152 -2 1005 268 26 60 chrX 4317847 4318348 -158281582 + L1ME1 LINE L1 5664 6147 -88 395 229 46 78 chrX 4318279 4318432 -158281498 + L1MA10 LINE L1 6240 6387 -16 * 21 57 0 0 chrX 4318578 4318613 -158281317 + AT_rich Low_complexity Low_complexity 1 35 0 4419 126 18 18 chrX 4319832 4320554 -158279376 + L1PA16 LINE L1 5444 6165 -1 2514 99 0 50 chrX 4321323 4321706 -158278224 - THE1B LTR MaLR 0 364 1 1235 76 6 0 chrX 4322173 4322344 -158277586 - L1PA5 LINE L1 -1 6153 5982 216 0 0 0 chrX 4322656 4322680 -158277250 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 4323739 4323761 -158276169 + AT_rich Low_complexity Low_complexity 1 22 0 297 183 0 0 chrX 4324054 4324114 -158275816 + GA-rich Low_complexity Low_complexity 1 60 0 1962 153 0 7 chrX 4324160 4324468 -158275462 + AluJb SINE Alu 1 306 -6 1704 163 3 7 chrX 4324904 4325187 -158274743 - AluJo SINE Alu -19 293 12 894 218 35 0 chrX 4326127 4326329 -158273601 + MER3 DNA MER1_type 1 209 0 408 277 168 7 chrX 4326349 4326486 -158273444 + MER5A DNA MER1_type 30 188 -1 2274 107 0 3 chrX 4327458 4327784 -158272146 + AluSx SINE Alu 12 336 0 1169 217 19 139 chrX 4328095 4328385 -158271545 - MLT1C LTR MaLR -42 425 214 4656 112 6 17 chrX 4328385 4329084 -158270846 - LTR8 LTR ERV1 0 691 1 1169 217 19 139 chrX 4329084 4329276 -158270654 - MLT1C LTR MaLR -253 214 1 24 53 0 0 chrX 4331553 4331591 -158268339 + AT_rich Low_complexity Low_complexity 1 38 0 1999 178 72 2 chrX 4331654 4332054 -158267876 - MSTA LTR MaLR 0 428 1 1017 110 0 7 chrX 4332054 4332209 -158267721 - MSTA-int LTR MaLR 0 1651 1498 374 364 78 33 chrX 4332256 4332772 -158267158 - ERVL LTR ERVL -648 5116 4578 2567 217 19 15 chrX 4333199 4333725 -158266205 + MER74A LTR ERVL 31 558 0 1765 166 3 14 chrX 4333820 4334115 -158265815 + AluJb SINE Alu 1 292 -20 1882 133 0 11 chrX 4334366 4334644 -158265286 + AluSx SINE Alu 1 275 -37 2239 149 31 24 chrX 4335330 4335713 -158264217 + LTR26 LTR ERV1 218 603 0 285 140 0 0 chrX 4336111 4336168 -158263762 + (TC)n Simple_repeat Simple_repeat 2 58 0 285 29 0 0 chrX 4336168 4336202 -158263728 + (CA)n Simple_repeat Simple_repeat 1 34 0 264 59 0 0 chrX 4336202 4336236 -158263694 + (GA)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chrX 4337345 4337384 -158262546 + AT_rich Low_complexity Low_complexity 1 39 0 240 242 0 0 chrX 4338035 4338097 -158261833 - L1M4 LINE L1 -2393 3753 3692 1352 6 17 17 chrX 4338101 4338279 -158261651 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1848 155 10 3 chrX 4338294 4338585 -158261345 - AluJb SINE Alu -19 293 1 422 310 7 35 chrX 4338733 4338875 -158261055 - MIR SINE MIR -89 173 36 299 293 0 57 chrX 4339270 4339393 -158260537 + L2 LINE L2 1799 1914 -1400 1412 139 9 0 chrX 4339442 4339672 -158260258 - MLT1B LTR MaLR 0 390 159 2087 172 6 10 chrX 4339673 4340063 -158259867 - MLT1B LTR MaLR 0 396 4 4179 74 26 0 chrX 4340096 4340661 -158259269 + LTR19B LTR ERV1 1 580 0 183 328 52 43 chrX 4340692 4340808 -158259122 - L2 LINE L2 -18 3254 3138 1807 153 45 29 chrX 4340980 4341107 -158258823 + L1MB3 LINE L1 5796 5919 -264 2357 194 31 82 chrX 4341107 4341752 -158258178 - LTR9 LTR ERV1 0 612 1 1807 153 45 29 chrX 4341752 4342002 -158257928 + L1MB3 LINE L1 5919 6179 -4 186 71 0 0 chrX 4342043 4342071 -158257859 + (CAA)n Simple_repeat Simple_repeat 3 30 0 231 324 59 0 chrX 4343292 4343360 -158256570 + MIR SINE MIR 24 95 -167 1503 134 20 24 chrX 4343962 4344208 -158255722 + AluJb SINE Alu 36 280 -32 689 221 0 6 chrX 4344213 4344385 -158255545 + GA-rich Low_complexity Low_complexity 1 171 0 261 0 0 0 chrX 4344386 4344415 -158255515 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 186 344 74 25 chrX 4344884 4345047 -158254883 + MIR3 SINE MIR 37 207 -1 239 283 33 22 chrX 4345868 4345960 -158253970 - MIR SINE MIR -122 140 48 1449 194 4 0 chrX 4346669 4346916 -158253014 + AluJo SINE Alu 39 286 -26 438 140 30 0 chrX 4346953 4347053 -158252877 + (TA)n Simple_repeat Simple_repeat 1 103 0 390 159 0 0 chrX 4347078 4347106 -158252824 + (TG)n Simple_repeat Simple_repeat 2 70 0 348 24 0 0 chrX 4347106 4347147 -158252783 + (TG)n Simple_repeat Simple_repeat 2 42 0 414 0 0 0 chrX 4347276 4347322 -158252608 + (TA)n Simple_repeat Simple_repeat 2 47 0 519 209 6 12 chrX 4348118 4348281 -158251649 + CT-rich Low_complexity Low_complexity 1 162 0 269 185 0 12 chrX 4348296 4348377 -158251553 + CT-rich Low_complexity Low_complexity 2 81 0 680 75 0 0 chrX 4349876 4349970 -158249960 - AluY SINE Alu -13 298 205 243 174 76 65 chrX 4350678 4350770 -158249160 + L1M4 LINE L1 3375 3467 -2679 333 222 42 14 chrX 4351231 4351375 -158248555 + (TA)n Simple_repeat Simple_repeat 2 149 0 283 220 71 64 chrX 4351438 4351579 -158248351 + L1M4 LINE L1 4123 4264 -1882 24 32 0 0 chrX 4351614 4351645 -158248285 + AT_rich Low_complexity Low_complexity 1 31 0 2059 145 0 0 chrX 4351794 4352098 -158247832 + AluSx SINE Alu 1 304 -8 727 153 0 0 chrX 4352319 4352437 -158247493 - FLAM_C SINE Alu -15 118 1 353 290 85 82 chrX 4352648 4353048 -158246882 + L1MB3 LINE L1 4010 4410 -1736 335 167 103 0 chrX 4353090 4353168 -158246762 + L1MB3 LINE L1 4502 4587 -1559 387 125 0 0 chrX 4353171 4353243 -158246687 + (TG)n Simple_repeat Simple_repeat 2 73 0 1813 177 57 0 chrX 4353461 4353850 -158246080 + L1MB3 LINE L1 5770 6180 -3 1064 98 6 0 chrX 4354300 4354464 -158245466 + (GGAA)n Simple_repeat Simple_repeat 3 167 0 33 0 0 0 chrX 4354557 4354590 -158245340 + AT_rich Low_complexity Low_complexity 1 33 0 406 185 39 0 chrX 4355342 4355472 -158244458 + CT-rich Low_complexity Low_complexity 1 135 0 21 0 0 0 chrX 4355886 4355907 -158244023 + AT_rich Low_complexity Low_complexity 1 21 0 1135 183 0 29 chrX 4355907 4356115 -158243815 - AluJo SINE Alu -24 288 87 22 0 0 0 chrX 4356211 4356233 -158243697 + AT_rich Low_complexity Low_complexity 1 22 0 227 31 31 0 chrX 4356317 4356349 -158243581 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 204 250 0 0 chrX 4356545 4356589 -158243341 - MIR SINE MIR 0 262 219 606 182 0 0 chrX 4356952 4357062 -158242868 - L1MA9 LINE L1 -33 6279 6170 1562 154 66 22 chrX 4357247 4357519 -158242411 + AluJb SINE Alu 1 284 -28 311 208 13 0 chrX 4357557 4357634 -158242296 + L1MA7 LINE L1 6210 6287 -4 37 0 0 0 chrX 4357635 4357672 -158242258 + AT_rich Low_complexity Low_complexity 1 37 0 2121 221 0 43 chrX 4357877 4358365 -158241565 + MLT1C LTR MaLR 1 467 0 2726 179 77 11 chrX 4358735 4359294 -158240636 + L1MA3 LINE L1 5545 6140 -165 2851 86 64 24 chrX 4359302 4359722 -158240208 + MLT2A1 LTR ERVL 1 437 -7 765 170 0 25 chrX 4359759 4359918 -158240012 + L1MA3 LINE L1 6151 6305 0 6602 55 2 28 chrX 4360028 4360900 -158239030 - L1PA7 LINE L1 -6 6148 5299 1788 162 18 26 chrX 4361027 4361367 -158238563 + THE1C LTR MaLR 1 337 -38 1097 143 0 0 chrX 4362180 4362369 -158237561 - L1MA3 LINE L1 -3 6302 6114 401 176 0 0 chrX 4362370 4362444 -158237486 + L1MA3 LINE L1 6037 6110 -195 24 0 0 0 chrX 4363526 4363550 -158236380 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chrX 4364918 4364959 -158234971 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 4365224 4365245 -158234685 + AT_rich Low_complexity Low_complexity 1 21 0 256 24 24 24 chrX 4365305 4365347 -158234583 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 14239 25 3 0 chrX 4365347 4367798 -158232132 - L1PA3 LINE L1 -2 6153 3697 8472 31 0 1 chrX 4367799 4368842 -158231088 + L1PA3 LINE L1 2650 3691 -2455 262 284 0 0 chrX 4369690 4369785 -158230145 - L1MB8 LINE L1 -2 6176 6082 1098 242 100 24 chrX 4373391 4373824 -158226106 - MLT1C LTR MaLR 0 467 1 310 363 67 9 chrX 4373824 4374047 -158225883 + L1MC5 LINE L1 7666 7901 -60 21 0 0 0 chrX 4374075 4374096 -158225834 + AT_rich Low_complexity Low_complexity 1 21 0 601 153 19 10 chrX 4374098 4374197 -158225733 - L1MA7 LINE L1 -497 5806 5705 2682 136 20 36 chrX 4374197 4374695 -158225235 + L1MA7 LINE L1 5800 6290 -1 601 153 19 10 chrX 4374695 4374711 -158225219 - L1MB8 LINE L1 -598 5705 5691 306 0 0 0 chrX 4374821 4374855 -158225075 + (CA)n Simple_repeat Simple_repeat 2 35 0 621 229 10 47 chrX 4374863 4375055 -158224875 + L1MB5 LINE L1 5980 6164 -10 24 0 0 0 chrX 4375336 4375360 -158224570 + AT_rich Low_complexity Low_complexity 1 24 0 3759 90 14 31 chrX 4375360 4375949 -158223981 - L1MA1 LINE L1 -3 6299 5721 1006 87 67 0 chrX 4375959 4376108 -158223822 - L1MA1 LINE L1 -696 5606 5448 1816 152 16 70 chrX 4376427 4376801 -158223129 - MLT1A1 LTR MaLR 0 365 12 910 229 161 0 chrX 4376808 4377088 -158222842 + MLT1D LTR MaLR 181 505 0 333 323 123 13 chrX 4377823 4377978 -158221952 - MIR SINE MIR -88 174 3 2254 120 22 27 chrX 4378020 4378386 -158221544 - THE1B LTR MaLR 0 364 1 2178 117 10 67 chrX 4378757 4379143 -158220787 + THE1B LTR MaLR 1 364 0 246 62 0 0 chrX 4379261 4379293 -158220637 + (CA)n Simple_repeat Simple_repeat 1 32 0 1517 197 55 0 chrX 4379674 4379963 -158219967 + AluJb SINE Alu 1 305 -7 315 313 172 0 chrX 4379995 4380129 -158219801 - MER5A DNA MER1_type -1 188 32 1361 228 81 29 chrX 4380130 4380574 -158219356 + MLT1C LTR MaLR 1 467 0 1793 219 77 11 chrX 4381729 4382011 -158217919 + MLT1D LTR MaLR 22 309 -158 234 0 0 0 chrX 4382011 4382037 -158217893 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1793 219 77 11 chrX 4382037 4382208 -158217722 + MLT1D LTR MaLR 309 467 0 26 30 0 0 chrX 4383488 4383521 -158216409 + AT_rich Low_complexity Low_complexity 1 33 0 257 237 31 10 chrX 4383568 4383665 -158216265 + (TA)n Simple_repeat Simple_repeat 2 100 0 401 240 91 32 chrX 4383768 4383922 -158216008 - MIR SINE MIR -71 191 29 286 301 65 32 chrX 4383968 4384036 -158215894 + MER5A DNA MER1_type 63 138 -51 2160 55 0 0 chrX 4384036 4384308 -158215622 - L1PA6 LINE L1 -8 6146 5875 286 301 65 32 chrX 4384308 4384362 -158215568 + MER5A DNA MER1_type 138 189 0 1052 234 76 45 chrX 4384717 4385114 -158214816 - MLT1C LTR MaLR 0 467 59 239 95 48 0 chrX 4385123 4385165 -158214765 + (TATG)n Simple_repeat Simple_repeat 2 45 0 637 308 39 4 chrX 4386855 4387089 -158212841 + MIR SINE MIR 18 259 -3 219 215 0 31 chrX 4387386 4387413 -158212517 + (TA)n Simple_repeat Simple_repeat 2 28 -36 2235 85 10 14 chrX 4387413 4387544 -158212386 + AluSx SINE Alu 3 133 -179 2532 57 0 0 chrX 4387544 4387845 -158212085 + AluY SINE Alu 1 301 -10 2235 85 10 14 chrX 4387845 4388007 -158211923 + AluSx SINE Alu 133 295 -17 219 215 0 31 chrX 4388007 4388044 -158211886 + (TA)n Simple_repeat Simple_repeat 28 64 0 24 0 0 0 chrX 4388146 4388170 -158211760 + AT_rich Low_complexity Low_complexity 1 24 0 1974 167 12 6 chrX 4388997 4389338 -158210592 - MER61A LTR ERV1 0 343 1 517 215 35 7 chrX 4389780 4389932 -158209998 - MER58B DNA MER1_type -25 316 33 1121 189 0 32 chrX 4390887 4391104 -158208826 + AluJo SINE Alu 1 210 -102 414 171 98 0 chrX 4391132 4391214 -158208716 + AluJo SINE Alu 192 281 -31 1313 66 0 11 chrX 4391221 4391403 -158208527 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 231 36 0 0 chrX 4391403 4391431 -158208499 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1082 126 0 11 chrX 4391433 4391615 -158208315 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1837 153 10 7 chrX 4391620 4391920 -158208010 + AluSx SINE Alu 1 301 -11 1371 236 159 14 chrX 4392225 4392666 -158207264 + MLT1D LTR MaLR 1 505 0 1565 187 32 7 chrX 4393022 4393305 -158206625 + AluJo SINE Alu 1 290 -22 28 29 0 0 chrX 4393305 4393340 -158206590 + AT_rich Low_complexity Low_complexity 1 35 0 1334 238 116 7 chrX 4393589 4394022 -158205908 + MLT2B1 LTR ERVL 1 480 -40 2016 146 0 10 chrX 4394079 4394380 -158205550 + AluSx SINE Alu 1 298 -14 1082 248 75 9 chrX 4394386 4394708 -158205222 - MER2 DNA MER2_type 0 344 2 306 253 6 22 chrX 4394875 4395057 -158204873 + (TA)n Simple_repeat Simple_repeat 1 179 0 200 318 0 0 chrX 4395060 4395126 -158204804 + (CATA)n Simple_repeat Simple_repeat 1 66 0 321 26 0 0 chrX 4395126 4395164 -158204766 + (TG)n Simple_repeat Simple_repeat 1 38 0 1263 39 0 6 chrX 4395632 4395788 -158204142 - L1PA4 LINE L1 -8 6147 5993 692 194 61 0 chrX 4396578 4396743 -158203187 - MER53 DNA DNA -3 186 12 675 240 23 73 chrX 4397025 4397124 -158202806 - L1M4 LINE L1 -2659 3487 3385 3727 126 0 13 chrX 4397124 4397658 -158202272 - MER1A DNA MER1_type 0 527 1 675 240 23 73 chrX 4397658 4397887 -158202043 - L1M4 LINE L1 -2761 3385 3174 23 33 0 0 chrX 4398188 4398218 -158201712 + AT_rich Low_complexity Low_complexity 1 30 0 * 250 114 0 0 chrX 4398212 4398247 -158201683 - L1PA15 LINE L1 -596 5569 5535 3738 152 3 0 chrX 4398244 4398848 -158201082 + L1PA15 LINE L1 5560 6165 0 978 132 0 0 chrX 4399106 4399290 -158200640 + L1PB3 LINE L1 6006 6189 0 4292 138 25 4 chrX 4400987 4401717 -158198213 + L1MA4A LINE L1 5555 6299 -4 2457 88 70 3 chrX 4402263 4402604 -158197326 - THE1B LTR MaLR 0 364 1 358 250 0 0 chrX 4404253 4404333 -158195597 + MLT1E1 LTR MaLR 51 130 -463 965 248 37 25 chrX 4404460 4404756 -158195174 + MLT1E1 LTR MaLR 288 654 0 21 0 0 0 chrX 4404997 4405018 -158194912 + AT_rich Low_complexity Low_complexity 1 21 0 1151 102 11 0 chrX 4405316 4405492 -158194438 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 440 190 0 10 chrX 4405497 4405597 -158194333 + GA-rich Low_complexity Low_complexity 4 102 0 1773 153 52 0 chrX 4405672 4405960 -158193970 + AluSx SINE Alu 3 305 -7 22 0 0 0 chrX 4406132 4406154 -158193776 + AT_rich Low_complexity Low_complexity 1 22 0 1672 194 75 75 chrX 4406218 4406738 -158193192 + MLT2B1 LTR ERVL 1 520 0 1159 257 39 41 chrX 4407088 4407426 -158192504 - MLT1G LTR MaLR -11 579 243 308 328 60 40 chrX 4407686 4407887 -158192043 - L1M4c LINE L1 -4735 1649 1445 23 0 0 0 chrX 4408190 4408213 -158191717 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chrX 4409024 4409068 -158190862 + AT_rich Low_complexity Low_complexity 1 44 0 2760 88 0 11 chrX 4409691 4410068 -158189862 - THE1C LTR MaLR 0 375 3 282 289 0 7 chrX 4410125 4410264 -158189666 + CT-rich Low_complexity Low_complexity 1 137 0 * 934 137 6 6 chrX 4410258 4410433 -158189497 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2202 110 0 3 chrX 4410832 4411142 -158188788 - AluSq SINE Alu -4 309 1 30 0 0 0 chrX 4411524 4411554 -158188376 + AT_rich Low_complexity Low_complexity 1 30 0 2434 161 5 31 chrX 4412775 4413221 -158186709 + Tigger2a DNA MER2_type 1 434 0 2481 101 28 6 chrX 4413630 4413986 -158185944 - THE1B LTR MaLR 0 364 1 193 392 13 0 chrX 4414047 4414126 -158185804 - L2 LINE L2 -27 3286 3207 203 175 0 0 chrX 4414514 4414554 -158185376 + T-rich Low_complexity Low_complexity 1 40 0 1832 246 109 42 chrX 4414865 4415228 -158184702 + L1MC/D LINE L1 1174 1511 -4915 3374 81 0 62 chrX 4415228 4415372 -158184558 + L1PB1 LINE L1 5665 5816 -335 183 42 0 0 chrX 4415372 4415396 -158184534 + (CA)n Simple_repeat Simple_repeat 2 25 0 3374 81 0 62 chrX 4415396 4415768 -158184162 + L1PB1 LINE L1 5816 6149 -2 1832 246 109 42 chrX 4415768 4415792 -158184138 + L1MC/D LINE L1 1511 1532 -4894 1638 133 4 0 chrX 4415792 4416025 -158183905 + AluSq SINE Alu 1 234 -79 1832 246 109 42 chrX 4416025 4416116 -158183814 + L1MC/D LINE L1 1532 1615 -4811 12334 24 0 0 chrX 4416116 4418334 -158181596 + L1PA3 LINE L1 3935 6152 -3 1832 246 109 42 chrX 4418334 4418949 -158180981 + L1MC/D LINE L1 1615 2343 -4083 1778 281 42 81 chrX 4418965 4419344 -158180586 + L1MC/D LINE L1 4070 4462 -1964 2408 53 0 0 chrX 4419344 4419650 -158180280 + AluY SINE Alu 1 306 0 1778 281 42 81 chrX 4419650 4420612 -158179318 + L1MC/D LINE L1 4462 5360 -1066 253 62 62 21 chrX 4420743 4420791 -158179139 - L1MD3 LINE L1 -1165 6830 6781 338 252 0 44 chrX 4420839 4420974 -158178956 - L1M4 LINE L1 -1819 4327 4199 189 195 0 0 chrX 4420992 4421033 -158178897 + (CATA)n Simple_repeat Simple_repeat 4 44 0 227 132 0 0 chrX 4421038 4421076 -158178854 - L1MA9 LINE L1 -82 6230 6193 1837 203 45 25 chrX 4421080 4421662 -158178268 + L1MC/D LINE L1 5386 5983 -743 2543 162 7 4 chrX 4422609 4423065 -158176865 + L1PA16 LINE L1 5710 6166 0 225 183 33 33 chrX 4423663 4423723 -158176207 + GA-rich Low_complexity Low_complexity 4 63 0 252 86 0 0 chrX 4423809 4423844 -158176086 + (T)n Simple_repeat Simple_repeat 1 35 0 1845 74 4 0 chrX 4423855 4424084 -158175846 - AluSp SINE Alu -83 230 1 38 75 0 0 chrX 4424366 4424446 -158175484 + AT_rich Low_complexity Low_complexity 1 80 0 352 222 35 23 chrX 4424451 4424622 -158175308 + (TA)n Simple_repeat Simple_repeat 1 173 0 242 214 38 10 chrX 4424690 4424987 -158174943 + (TA)n Simple_repeat Simple_repeat 1 305 0 330 153 0 0 chrX 4426738 4426797 -158173133 + GA-rich Low_complexity Low_complexity 2 60 0 613 285 29 37 chrX 4426822 4427064 -158172866 - LTR16A1 LTR ERVL 0 457 218 369 263 60 8 chrX 4427203 4427336 -158172594 - LTR16A1 LTR ERVL -100 357 218 477 151 0 0 chrX 4427336 4427422 -158172508 + GA-rich Low_complexity Low_complexity 2 87 0 421 194 68 29 chrX 4427507 4427592 -158172338 + MER20 DNA MER1_type 7 95 -124 1975 149 26 29 chrX 4427592 4427975 -158171955 - LTR8 LTR ERV1 0 691 310 1584 181 6 40 chrX 4428044 4428370 -158171560 - LTR8 LTR ERV1 -376 315 1 462 250 17 8 chrX 4428370 4428490 -158171440 + MER20 DNA MER1_type 95 215 -4 325 316 0 34 chrX 4428504 4428621 -158171309 - LTR16A1 LTR ERVL -342 115 3 6345 47 0 0 chrX 4428697 4429470 -158170460 - L1PA5 LINE L1 0 6154 5382 1808 144 115 11 chrX 4429506 4429911 -158170019 - MER84 LTR ERVI -2 505 1 22 0 0 0 chrX 4430131 4430153 -158169777 + AT_rich Low_complexity Low_complexity 1 22 0 1512 205 98 8 chrX 4430960 4431316 -158168614 + MLT2C1 LTR ERVL 8 395 -2 211 200 16 54 chrX 4431615 4431800 -158168130 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 231 258 0 15 chrX 4431807 4431873 -158168057 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 568 58 58 29 chrX 4431876 4432015 -158167915 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 244 287 149 35 chrX 4432380 4432554 -158167376 - L1MC/D LINE L1 -2172 5636 5443 1914 180 20 9 chrX 4432706 4433050 -158166880 + MER7A DNA MER2_type 1 346 0 351 0 0 0 chrX 4433242 4433281 -158166649 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 61 0 0 chrX 4433281 4433314 -158166616 + (GA)n Simple_repeat Simple_repeat 2 34 0 378 319 70 75 chrX 4433521 4434133 -158165797 - HAL1 LINE L1 -1051 1456 848 320 109 0 18 chrX 4434196 4434251 -158165679 + (TCC)n Simple_repeat Simple_repeat 3 56 0 237 224 0 0 chrX 4434252 4434301 -158165629 + CT-rich Low_complexity Low_complexity 2 50 0 566 135 34 14 chrX 4434394 4434542 -158165388 + CT-rich Low_complexity Low_complexity 1 151 0 189 226 36 0 chrX 4434556 4434640 -158165290 + CT-rich Low_complexity Low_complexity 6 92 0 238 257 38 87 chrX 4435846 4436029 -158163901 - MIR SINE MIR -17 245 72 1804 130 0 50 chrX 4436792 4437091 -158162839 - AluJb SINE Alu -26 286 3 506 302 14 0 chrX 4437096 4437235 -158162695 - MER5B DNA MER1_type -31 147 7 289 173 71 16 chrX 4437759 4437886 -158162044 + (TA)n Simple_repeat Simple_repeat 1 134 0 2421 193 38 24 chrX 4437918 4438452 -158161478 - L1MB4 LINE L1 -40 6140 5600 205 305 46 30 chrX 4438505 4438636 -158161294 - MIR SINE MIR -127 135 3 706 312 20 8 chrX 4439039 4439286 -158160644 + MIR SINE MIR 12 261 -1 343 237 0 0 chrX 4439457 4439533 -158160397 + MLT1F1 LTR MaLR 84 159 -408 1633 170 0 14 chrX 4439549 4439831 -158160099 - AluJo SINE Alu -9 303 26 233 239 0 41 chrX 4440265 4440333 -158159597 - MIR SINE MIR -88 120 61 2426 86 0 0 chrX 4440338 4440640 -158159290 - AluSx SINE Alu -9 303 2 314 305 26 20 chrX 4442047 4442198 -158157732 - L1MC4 LINE L1 -975 7067 6916 556 276 35 44 chrX 4442219 4442534 -158157396 + L1MC5 LINE L1 7087 7398 -563 4217 154 18 11 chrX 4442542 4443251 -158156679 + MER50 LTR ERV1 2 715 -19 292 280 6 12 chrX 4443459 4443627 -158156303 + GA-rich Low_complexity Low_complexity 3 169 0 228 310 0 0 chrX 4444187 4444245 -158155685 + MIR SINE MIR 11 68 -194 271 234 13 26 chrX 4444304 4444381 -158155549 + MIR SINE MIR 174 249 -13 391 231 12 89 chrX 4444506 4444675 -158155255 + MIR SINE MIR 94 249 -13 734 331 33 19 chrX 4445024 4445417 -158154513 - LTR16A LTR ERVL 0 457 52 25 0 0 0 chrX 4445896 4445921 -158154009 + AT_rich Low_complexity Low_complexity 1 25 0 836 178 51 47 chrX 4446067 4446281 -158153649 + AluJo SINE Alu 85 299 -13 228 227 13 53 chrX 4446326 4446401 -158153529 - L1ME4a LINE L1 -100 6021 5950 22 0 0 0 chrX 4446408 4446430 -158153500 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chrX 4447212 4447247 -158152683 + (CA)n Simple_repeat Simple_repeat 2 36 0 215 149 0 21 chrX 4448460 4448507 -158151423 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 335 233 0 7 chrX 4448548 4448694 -158151236 + (TA)n Simple_repeat Simple_repeat 2 146 0 276 30 0 0 chrX 4448694 4448727 -158151203 + (GA)n Simple_repeat Simple_repeat 2 34 0 217 338 0 0 chrX 4449442 4449510 -158150420 + MIR3 SINE MIR 113 180 -28 192 77 0 0 chrX 4452864 4452890 -158147040 + (TG)n Simple_repeat Simple_repeat 2 27 0 1485 176 10 60 chrX 4452890 4453191 -158146739 - AluJo SINE Alu -26 286 1 333 309 19 37 chrX 4453740 4453902 -158146028 + MER3 DNA MER1_type 17 128 -81 221 318 0 0 chrX 4453928 4453994 -158145936 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 206 336 10 0 chrX 4455206 4455310 -158144620 + (TA)n Simple_repeat Simple_repeat 2 106 0 207 0 0 0 chrX 4455310 4455333 -158144597 + (CA)n Simple_repeat Simple_repeat 2 24 0 1620 191 19 3 chrX 4455341 4455655 -158144275 - MER2 DNA MER2_type -25 320 2 304 141 18 61 chrX 4455660 4455823 -158144107 + (TA)n Simple_repeat Simple_repeat 1 156 0 193 130 15 84 chrX 4455841 4455972 -158143958 + (TA)n Simple_repeat Simple_repeat 1 122 0 312 243 23 34 chrX 4455991 4456012 -158143918 + (TA)n Simple_repeat Simple_repeat 2 22 -154 1799 144 3 89 chrX 4456012 4456338 -158143592 + AluSx SINE Alu 1 298 -14 312 243 23 34 chrX 4456338 4456493 -158143437 + (TA)n Simple_repeat Simple_repeat 22 176 0 282 224 0 0 chrX 4456582 4456640 -158143290 + L1MCc LINE L1 -540 4294966813 -6347 276 348 105 20 chrX 4457364 4457715 -158142215 + L1MCc LINE L1 597 977 -4887 41 48 0 0 chrX 4457726 4457788 -158142142 + AT_rich Low_complexity Low_complexity 1 62 0 263 299 82 42 chrX 4457897 4458325 -158141605 + L1MCc LINE L1 1249 1748 -4815 479 261 144 39 chrX 4458359 4458692 -158141238 + L1MCc LINE L1 2696 3063 -3319 225 300 0 12 chrX 4458748 4458828 -158141102 + GA-rich Low_complexity Low_complexity 1 79 0 27 29 0 0 chrX 4458831 4458865 -158141065 + AT_rich Low_complexity Low_complexity 1 34 0 886 249 75 34 chrX 4458924 4459401 -158140529 + L1ME3 LINE L1 5665 6161 -1 349 101 62 23 chrX 4460064 4460193 -158139737 + (TA)n Simple_repeat Simple_repeat 1 134 0 800 274 19 63 chrX 4461387 4461766 -158138164 - L1ME2 LINE L1 -11 6153 5792 2342 75 6 25 chrX 4461898 4462216 -158137714 - AluSx SINE Alu 0 312 1 1866 109 60 0 chrX 4463218 4463530 -158136400 - AluSx SINE Alu 0 328 1 195 222 0 0 chrX 4464006 4464051 -158135879 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 0 0 0 chrX 4464112 4464141 -158135789 + AT_rich Low_complexity Low_complexity 1 29 0 2333 98 131 6 chrX 4464434 4464800 -158135130 + MSTA LTR MaLR 14 425 -3 333 221 168 44 chrX 4464847 4464960 -158134970 - MER58A DNA MER1_type 0 156 30 227 250 0 0 chrX 4465768 4465824 -158134106 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chrX 4466303 4466327 -158133603 + AT_rich Low_complexity Low_complexity 1 24 0 1090 262 62 59 chrX 4466614 4467102 -158132828 + MLT1D LTR MaLR 16 504 -1 1977 142 0 34 chrX 4467961 4468284 -158131646 + AluJb SINE Alu 1 312 0 801 103 135 70 chrX 4468347 4468503 -158131427 - L1MC1 LINE L1 0 6333 6168 240 203 203 0 chrX 4468572 4468636 -158131294 - LTR16B LTR ERVL 0 464 388 215 329 0 0 chrX 4468710 4468789 -158131141 + T-rich Low_complexity Low_complexity 4 82 0 2096 151 30 30 chrX 4468804 4469168 -158130762 - THE1B LTR MaLR 0 364 1 1068 133 0 0 chrX 4469207 4469387 -158130543 + (CAT)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chrX 4469399 4469423 -158130507 + (CACCAT)n Simple_repeat Simple_repeat 1 24 0 1734 173 119 61 chrX 4469866 4470276 -158129654 - Tigger2a DNA MER2_type 0 434 1 1279 121 0 0 chrX 4471095 4471268 -158128662 + AluSx SINE Alu 1 173 -139 481 143 11 55 chrX 4471269 4471360 -158128570 + MSTA LTR MaLR 342 428 0 1060 164 180 16 chrX 4471387 4471631 -158128299 - MSTA LTR MaLR -134 294 11 2110 127 0 7 chrX 4472119 4472418 -158127512 - AluSx SINE Alu -15 297 1 1449 81 0 0 chrX 4472444 4472630 -158127300 - L1P LINE L1 -1989 4157 3972 274 265 70 114 chrX 4472772 4473044 -158126886 - MLT1J LTR MaLR -23 488 229 3303 233 31 17 chrX 4473358 4474238 -158125692 - L1MB7 LINE L1 -5 6179 5288 198 258 79 45 chrX 4474619 4474708 -158125222 - L3b LINE CR1 -216 1367 1276 758 233 48 37 chrX 4475660 4475849 -158124081 - MLT1E LTR MaLR -32 561 371 207 311 67 11 chrX 4476132 4476222 -158123708 + L2 LINE L2 2947 3041 -231 1737 146 26 0 chrX 4476340 4476607 -158123323 - AluSx SINE Alu -38 274 1 5476 98 24 17 chrX 4476956 4477616 -158122314 + L1PB1 LINE L1 5299 5968 -183 1978 149 0 7 chrX 4477616 4477917 -158122013 + AluSx SINE Alu 7 305 -7 5476 98 24 17 chrX 4477917 4478096 -158121834 + L1PB1 LINE L1 5968 6144 -7 21 36 0 0 chrX 4478415 4478443 -158121487 + AT_rich Low_complexity Low_complexity 1 28 0 199 146 36 0 chrX 4478844 4478899 -158121031 + T-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chrX 4479004 4479025 -158120905 + AT_rich Low_complexity Low_complexity 1 21 0 201 286 75 60 chrX 4479029 4479162 -158120768 - MIR SINE MIR -96 166 32 597 99 0 62 chrX 4479826 4480018 -158119912 + (TA)n Simple_repeat Simple_repeat 1 180 0 1693 160 10 10 chrX 4480286 4480593 -158119337 + L1MA8 LINE L1 5750 6056 -235 511 203 8 8 chrX 4480593 4480722 -158119208 + L1MA7 LINE L1 6159 6291 0 557 146 10 10 chrX 4480723 4480826 -158119104 + L1MC3 LINE L1 7682 7784 -1 227 200 50 50 chrX 4481031 4481111 -158118819 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 183 184 0 0 chrX 4481116 4481154 -158118776 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chrX 4482095 4482120 -158117810 + AT_rich Low_complexity Low_complexity 1 25 0 203 291 0 0 chrX 4484110 4484165 -158115765 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2067 147 0 3 chrX 4484236 4484548 -158115382 + AluSx SINE Alu 1 311 -1 445 272 80 0 chrX 4486783 4486908 -158113022 + MIR SINE MIR 84 218 -44 2818 222 39 47 chrX 4487921 4488150 -158111780 + L1MB8 LINE L1 4590 4819 -1359 2472 151 25 23 chrX 4488150 4488582 -158111348 - Tigger2a DNA MER2_type 0 434 2 2818 222 39 47 chrX 4488582 4489220 -158110710 + L1MB8 LINE L1 4819 5428 -750 1846 163 20 0 chrX 4489220 4489514 -158110416 + AluSx SINE Alu 1 300 -12 2818 222 39 47 chrX 4489514 4490055 -158109875 + L1MB8 LINE L1 5428 5972 -206 2183 168 28 30 chrX 4490346 4490852 -158109078 + L1MA8 LINE L1 5780 6284 -7 916 174 54 0 chrX 4490948 4491097 -158108833 - AluJo SINE Alu -27 285 129 723 104 0 0 chrX 4491116 4491222 -158108708 + (TC)n Simple_repeat Simple_repeat 1 106 0 788 173 0 0 chrX 4491222 4491355 -158108575 - AluJo SINE Alu -169 133 1 295 216 57 11 chrX 4491686 4491774 -158108156 - AluSg SINE Alu -207 93 2 1282 193 68 15 chrX 4492036 4492300 -158107630 + AluJo SINE Alu 1 278 -34 709 181 129 0 chrX 4492301 4492456 -158107474 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 4492456 4492491 -158107439 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 4492520 4492560 -158107370 + AT_rich Low_complexity Low_complexity 1 40 0 2026 131 0 3 chrX 4493017 4493307 -158106623 + AluSx SINE Alu 1 289 -23 445 272 80 0 chrX 4495564 4495689 -158104241 + MIR SINE MIR 84 218 -44 292 300 57 37 chrX 4496612 4497103 -158102827 + MER90 LTR ERV1 1 597 -17 210 158 0 0 chrX 4497154 4497192 -158102738 + T-rich Low_complexity Low_complexity 1 38 0 235 229 84 36 chrX 4497375 4497458 -158102472 + MER5A DNA MER1_type 26 112 -77 328 222 49 0 chrX 4497985 4498066 -158101864 + L2 LINE L2 3188 3272 0 412 271 23 17 chrX 4498199 4498359 -158101571 + (TATATG)n Simple_repeat Simple_repeat 1 159 -460 1432 189 66 0 chrX 4498359 4498677 -158101253 - MER44D DNA MER2_type 0 609 1 412 271 23 17 chrX 4498677 4498695 -158101235 + (TATATG)n Simple_repeat Simple_repeat 159 175 -444 270 0 0 0 chrX 4498695 4498725 -158101205 + (CA)n Simple_repeat Simple_repeat 2 31 0 412 271 23 17 chrX 4498725 4498815 -158101115 + (TATATG)n Simple_repeat Simple_repeat 175 619 0 291 256 23 11 chrX 4498852 4498936 -158100994 + (TA)n Simple_repeat Simple_repeat 2 84 -95 1712 206 21 0 chrX 4498936 4499276 -158100654 - MER7A DNA MER2_type 0 346 2 291 256 23 11 chrX 4499276 4499367 -158100563 + (TA)n Simple_repeat Simple_repeat 84 179 0 237 180 0 0 chrX 4500350 4500400 -158099530 + T-rich Low_complexity Low_complexity 1 50 0 226 244 0 0 chrX 4502153 4502198 -158097732 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 240 163 0 0 chrX 4502844 4502887 -158097043 + CT-rich Low_complexity Low_complexity 3 45 0 803 246 65 5 chrX 4504163 4504362 -158095568 + MER20 DNA MER1_type 9 219 0 251 325 117 21 chrX 4505304 4505492 -158094438 + MIR SINE MIR 47 252 -10 213 179 0 39 chrX 4505688 4505766 -158094164 + (TA)n Simple_repeat Simple_repeat 1 75 0 701 207 14 24 chrX 4507223 4507726 -158092204 + CT-rich Low_complexity Low_complexity 1 497 0 237 303 57 51 chrX 4508795 4508970 -158090960 - MER113 DNA MER1_type? -1 520 345 180 158 0 0 chrX 4509012 4509050 -158090880 + T-rich Low_complexity Low_complexity 1 38 0 601 270 17 0 chrX 4509050 4509224 -158090706 - MER113 DNA MER1_type? -213 308 132 1452 242 25 28 chrX 4509463 4509897 -158090033 + MLT1C LTR MaLR 1 433 -34 1881 160 0 22 chrX 4509900 4510218 -158089712 - AluJb SINE Alu 0 312 2 180 179 0 0 chrX 4510991 4511030 -158088900 + (TATG)n Simple_repeat Simple_repeat 1 39 0 409 196 17 12 chrX 4511118 4511291 -158088639 + (TA)n Simple_repeat Simple_repeat 1 174 0 25 31 0 0 chrX 4511293 4511325 -158088605 + AT_rich Low_complexity Low_complexity 1 32 0 1778 158 13 20 chrX 4511455 4511581 -158088349 + AluJo SINE Alu 6 131 -181 1581 178 34 17 chrX 4511581 4511879 -158088051 + AluJo SINE Alu 1 303 -9 1778 158 13 20 chrX 4511879 4512056 -158087874 + AluJo SINE Alu 131 307 -5 336 176 0 0 chrX 4512258 4512326 -158087604 + (TG)n Simple_repeat Simple_repeat 1 68 0 180 0 0 0 chrX 4513416 4513436 -158086494 + (CA)n Simple_repeat Simple_repeat 2 21 0 1404 178 83 14 chrX 4515026 4515302 -158084628 - AluJb SINE Alu -17 295 1 205 294 101 37 chrX 4515686 4515795 -158084135 - MIR3 SINE MIR 0 208 93 189 0 0 0 chrX 4515854 4515875 -158084055 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1683 134 31 28 chrX 4515875 4516155 -158083775 - AluJo SINE Alu -28 284 1 1756 120 8 8 chrX 4516175 4516434 -158083496 + AluSx SINE Alu 38 296 -16 522 222 6 11 chrX 4517220 4517400 -158082530 + GA-rich Low_complexity Low_complexity 1 179 0 389 252 7 0 chrX 4517423 4517574 -158082356 + GA-rich Low_complexity Low_complexity 1 152 0 1378 166 81 8 chrX 4517974 4518221 -158081709 + AluJo SINE Alu 7 271 -41 3394 167 58 36 chrX 4521076 4521416 -158078514 + LTR8A LTR ERV1 1 332 -395 826 125 0 17 chrX 4521416 4521536 -158078394 - L1PA15 LINE L1 -8 6157 6040 3394 167 58 36 chrX 4521536 4521907 -158078023 + LTR8A LTR ERV1 332 727 0 986 139 7 0 chrX 4522427 4522700 -158077230 + GA-rich Low_complexity Low_complexity 1 275 0 21 0 0 0 chrX 4522822 4522843 -158077087 + AT_rich Low_complexity Low_complexity 1 21 0 2885 107 0 0 chrX 4523334 4523698 -158076232 + THE1B LTR MaLR 1 364 0 362 151 14 0 chrX 4524177 4524250 -158075680 + (TA)n Simple_repeat Simple_repeat 2 75 0 2170 122 0 3 chrX 4525139 4525435 -158074495 - AluSx SINE Alu -17 295 1 1952 164 3 0 chrX 4526027 4526338 -158073592 - AluSx SINE Alu 0 312 1 272 321 0 0 chrX 4527110 4527191 -158072739 + MIR SINE MIR 89 169 -93 459 301 68 0 chrX 4528857 4529020 -158070910 - MLT1D LTR MaLR -264 241 68 1839 113 77 116 chrX 4529063 4529416 -158070514 + Charlie3 DNA MER1_type 1 2712 0 608 259 145 0 chrX 4529434 4529662 -158070268 - L1M4 LINE L1 -849 5297 5037 301 345 106 32 chrX 4529730 4530191 -158069739 - L2 LINE L2 -339 2975 2481 314 80 20 0 chrX 4530719 4530769 -158069161 + (TA)n Simple_repeat Simple_repeat 1 51 0 533 28 14 0 chrX 4530977 4531048 -158068882 + (GA)n Simple_repeat Simple_repeat 2 73 0 1670 124 0 0 chrX 4531835 4532076 -158067854 + L1MA5A LINE L1 6051 6291 -6 1995 117 6 22 chrX 4532167 4532483 -158067447 + AluSx SINE Alu 2 312 0 450 231 28 14 chrX 4532556 4532699 -158067231 - L1MB4 LINE L1 -36 6144 6000 1536 143 16 91 chrX 4532708 4533016 -158066914 - AluJb SINE Alu -16 296 12 2183 130 95 18 chrX 4533016 4533354 -158066576 - THE1B LTR MaLR 0 364 1 3084 103 2 7 chrX 4534174 4534601 -158065329 + L1PB1 LINE L1 5727 6151 0 281 292 21 21 chrX 4534751 4534847 -158065083 - MER5B DNA MER1_type -22 156 61 209 342 118 56 chrX 4535022 4535183 -158064747 - MER5A DNA MER1_type -9 180 10 907 253 78 32 chrX 4535474 4535948 -158063982 - L1ME3 LINE L1 -2 6160 5665 27 29 0 0 chrX 4536007 4536041 -158063889 + AT_rich Low_complexity Low_complexity 1 34 0 225 300 0 12 chrX 4536044 4536124 -158063806 + CT-rich Low_complexity Low_complexity 1 79 0 512 255 75 45 chrX 4536180 4536447 -158063483 - L1MCc LINE L1 -3319 3622 3348 288 295 74 38 chrX 4536508 4536975 -158062955 - L1MCc LINE L1 -4600 2341 1808 41 48 0 0 chrX 4537083 4537145 -158062785 + AT_rich Low_complexity Low_complexity 1 62 0 333 348 105 20 chrX 4537156 4537507 -158062423 - L1MCc LINE L1 -4887 1536 1156 290 224 0 0 chrX 4538231 4538289 -158061641 - L1MCc LINE L1 -6347 76 19 305 277 22 7 chrX 4538368 4538505 -158061425 + (TA)n Simple_repeat Simple_repeat 1 139 0 2256 110 0 3 chrX 4538533 4538832 -158061098 - AluSx SINE Alu -14 298 1 311 377 45 36 chrX 4539086 4539423 -158060507 + L1MC4a LINE L1 5566 5905 -1903 1952 164 3 0 chrX 4539429 4539740 -158060190 - AluSx SINE Alu 0 312 1 272 321 0 0 chrX 4540512 4540593 -158059337 + MIR SINE MIR 89 169 -93 459 301 68 0 chrX 4542259 4542422 -158057508 - MLT1D LTR MaLR -264 241 68 1839 113 77 116 chrX 4542465 4542818 -158057112 + Charlie3 DNA MER1_type 1 2712 0 192 77 0 0 chrX 4544397 4544423 -158055507 + (TG)n Simple_repeat Simple_repeat 2 27 0 1525 169 10 60 chrX 4544423 4544724 -158055206 - AluJo SINE Alu -26 286 1 1361 240 116 7 chrX 4544782 4545215 -158054715 - MLT2B1 LTR ERVL -40 480 1 1582 182 30 23 chrX 4545480 4545782 -158054148 - AluJo SINE Alu -8 304 1 1414 236 159 14 chrX 4546138 4546579 -158053351 - MLT1D LTR MaLR 0 505 1 1843 153 10 7 chrX 4546883 4547183 -158052747 - AluSx SINE Alu -11 301 1 953 144 0 11 chrX 4547188 4547368 -158052562 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 396 230 11 6 chrX 4547372 4547550 -158052380 + CT-rich Low_complexity Low_complexity 2 180 0 235 264 50 16 chrX 4548239 4548360 -158051570 + (TGGG)n Simple_repeat Simple_repeat 2 126 0 * 493 251 34 17 chrX 4548272 4548447 -158051483 + G-rich Low_complexity Low_complexity 2 179 0 561 213 0 0 chrX 4548458 4548622 -158051308 + G-rich Low_complexity Low_complexity 1 164 0 205 338 0 0 chrX 4549389 4549457 -158050473 - MIR3 SINE MIR -28 180 113 201 321 46 30 chrX 4551037 4551168 -158048762 + MIR SINE MIR 3 135 -127 2490 195 38 24 chrX 4551221 4551755 -158048175 + L1MB4 LINE L1 5600 6140 -40 28 61 0 0 chrX 4551786 4551835 -158048095 + AT_rich Low_complexity Low_complexity 1 49 0 197 0 0 67 chrX 4552409 4552439 -158047491 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 27 29 0 0 chrX 4552576 4552610 -158047320 + GC_rich Low_complexity Low_complexity 1 34 0 273 98 0 0 chrX 4552850 4552891 -158047039 + (CA)n Simple_repeat Simple_repeat 1 41 0 231 238 19 9 chrX 4553050 4553155 -158046775 + (TA)n Simple_repeat Simple_repeat 2 107 0 516 273 61 6 chrX 4553263 4553428 -158046502 + REP3 LTR ERV 389 562 0 1303 187 84 15 chrX 4553709 4553830 -158046100 + AluJo SINE Alu 1 112 -200 270 0 0 0 chrX 4553830 4553860 -158046070 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1303 187 84 15 chrX 4553860 4554000 -158045930 + AluJo SINE Alu 112 280 -32 259 241 12 48 chrX 4554169 4554252 -158045678 + MLT1I LTR MaLR 292 371 -38 1690 172 29 10 chrX 4554256 4554564 -158045366 + L1MC1 LINE L1 6020 6333 0 287 216 57 34 chrX 4555187 4555275 -158044655 - LTR4 LTR ERV1 -500 96 7 * 587 203 138 91 chrX 4555259 4555551 -158044379 + LTR1B LTR ERV1 487 745 -81 1111 252 86 45 chrX 4555880 4556345 -158043585 + LTR1 LTR ERV1 2 485 -300 580 207 18 65 chrX 4556348 4556565 -158043365 - LTR4 LTR ERV1 0 596 390 280 260 21 62 chrX 4556859 4556955 -158042975 - LTR4 LTR ERV1 -479 117 26 226 255 0 0 chrX 4557563 4557610 -158042320 - L2 LINE L2 -251 3062 3016 436 253 171 82 chrX 4557730 4558133 -158041797 - MLT1H LTR MaLR 0 549 111 722 236 0 11 chrX 4558145 4558319 -158041611 + L1MB7 LINE L1 6005 6176 -8 233 265 39 128 chrX 4560727 4560961 -158038969 - Charlie2a DNA MER1_type -1909 953 741 2938 193 24 18 chrX 4561647 4562192 -158037738 - MER44D DNA MER2_type -1 604 2 512 240 16 8 chrX 4562252 4562373 -158037557 + AluSq SINE Alu 82 203 -110 863 153 0 36 chrX 4562558 4562695 -158037235 - FLAM_C SINE Alu -1 132 1 247 330 94 29 chrX 4562761 4563316 -158036614 + L1ME2 LINE L1 2110 2700 -3446 518 264 127 50 chrX 4563745 4564376 -158035554 + L1ME2 LINE L1 5261 5946 -218 571 263 21 35 chrX 4564483 4564844 -158035086 + L1ME1 LINE L1 5595 6038 -128 276 149 0 0 chrX 4564847 4564894 -158035036 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1031 146 0 0 chrX 4564914 4565065 -158034865 - AluSg/x SINE Alu -27 283 133 419 226 40 7 chrX 4565068 4565190 -158034740 + L1MA10 LINE L1 6181 6302 -10 799 126 0 14 chrX 4565479 4565622 -158034308 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 21 0 0 0 chrX 4567059 4567080 -158032850 + AT_rich Low_complexity Low_complexity 1 21 0 225 163 0 0 chrX 4567448 4567497 -158032433 + G-rich Low_complexity Low_complexity 1 49 0 204 97 0 0 chrX 4567645 4567676 -158032254 + (G)n Simple_repeat Simple_repeat 1 31 0 366 369 0 0 chrX 4567708 4567884 -158032046 + G-rich Low_complexity Low_complexity 1 176 0 289 292 4 8 chrX 4568788 4568959 -158030971 + C-rich Low_complexity Low_complexity 1 170 0 1363 159 44 63 chrX 4569115 4569492 -158030438 + L1PB4 LINE L1 5791 6155 -1 487 288 87 9 chrX 4570081 4570300 -158029630 - L1MB3 LINE L1 0 6183 5948 676 183 56 16 chrX 4571357 4571483 -158028447 + FLAM_A SINE Alu 2 132 -1 217 314 0 14 chrX 4571721 4571791 -158028139 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 183 129 0 0 chrX 4571803 4571834 -158028096 + (CATA)n Simple_repeat Simple_repeat 2 32 0 258 222 0 0 chrX 4572086 4572140 -158027790 - L1MA5 LINE L1 -198 6102 6049 482 79 13 0 chrX 4572925 4573001 -158026929 + (TC)n Simple_repeat Simple_repeat 1 77 0 347 344 0 6 chrX 4573003 4573211 -158026719 + C-rich Low_complexity Low_complexity 1 206 0 206 279 0 25 chrX 4573319 4573477 -158026453 + C-rich Low_complexity Low_complexity 6 159 0 198 0 0 0 chrX 4573717 4573739 -158026191 + (C)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chrX 4574266 4574290 -158025640 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chrX 4574846 4574870 -158025060 + GC_rich Low_complexity Low_complexity 1 24 0 863 136 76 27 chrX 4574971 4575155 -158024775 + AluSc SINE Alu 109 301 -8 369 166 31 151 chrX 4575310 4575466 -158024464 + MLT1D LTR MaLR 214 497 -8 284 290 54 65 chrX 4575476 4575662 -158024268 - L2 LINE L2 -1291 2023 1840 182 333 15 15 chrX 4575647 4575713 -158024217 + L2 LINE L2 2577 2642 -672 * 422 310 194 7 chrX 4575722 4575997 -158023933 + L2 LINE L2 2745 3070 -243 207 71 0 71 chrX 4576927 4576969 -158022961 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 486 257 69 58 chrX 4577330 4577591 -158022339 + MARNA DNA Mariner 316 579 -7 1440 128 88 51 chrX 4577853 4578149 -158021781 - MER44D DNA MER2_type -1 608 32 366 91 0 0 chrX 4578178 4578233 -158021697 + (TC)n Simple_repeat Simple_repeat 2 56 0 1645 184 0 17 chrX 4578817 4579111 -158020819 + AluJo SINE Alu 2 290 -22 796 176 0 0 chrX 4579111 4579230 -158020700 - AluJo/FLAM SINE Alu -191 121 3 318 313 6 22 chrX 4579415 4579594 -158020336 + CT-rich Low_complexity Low_complexity 4 179 0 360 337 0 27 chrX 4579607 4579791 -158020139 + C-rich Low_complexity Low_complexity 1 179 0 1530 188 17 17 chrX 4581066 4581359 -158018571 + AluJo SINE Alu 17 309 -3 2178 103 7 7 chrX 4581381 4581672 -158018258 - AluSq SINE Alu -21 292 2 1281 186 68 15 chrX 4581930 4582194 -158017736 + AluJo SINE Alu 1 278 -34 724 181 129 0 chrX 4582195 4582350 -158017580 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 4582350 4582385 -158017545 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 4582414 4582454 -158017476 + AT_rich Low_complexity Low_complexity 1 40 0 2161 129 0 0 chrX 4582911 4583213 -158016717 + AluSx SINE Alu 1 302 -10 186 43 0 0 chrX 4583239 4583262 -158016668 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 183 259 0 0 chrX 4584872 4584930 -158015000 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1004 323 56 37 chrX 4587050 4587617 -158012313 + L2 LINE L2 1050 1627 -1687 774 330 8 42 chrX 4587701 4588058 -158011872 + MLT1I LTR MaLR 63 407 -2 405 313 96 36 chrX 4588069 4588350 -158011580 + L2 LINE L2 1648 1945 -1369 1559 284 118 26 chrX 4588464 4589291 -158010639 + L2 LINE L2 1943 2693 -620 2534 99 51 17 chrX 4589291 4589643 -158010287 + THE1B LTR MaLR 1 364 0 1559 284 118 26 chrX 4589643 4589912 -158010018 + L2 LINE L2 2693 2936 -377 1447 191 10 37 chrX 4589912 4590211 -158009719 + AluJo SINE Alu 1 291 -21 1559 284 118 26 chrX 4590211 4590371 -158009559 + L2 LINE L2 2936 3313 0 3695 140 2 4 chrX 4591450 4592006 -158007924 + L1PA15 LINE L1 5611 6165 0 218 157 59 20 chrX 4592082 4592133 -158007797 + A-rich Low_complexity Low_complexity 5 57 0 2193 118 0 3 chrX 4593223 4593528 -158006402 + AluSg SINE Alu 1 304 -6 1845 157 0 4 chrX 4593545 4593819 -158006111 + AluJo SINE Alu 1 273 -39 22 56 0 0 chrX 4595687 4595723 -158004207 + AT_rich Low_complexity Low_complexity 1 36 0 2314 88 3 7 chrX 4595727 4596032 -158003898 + AluY SINE Alu 1 304 -7 954 185 0 51 chrX 4597181 4597359 -158002571 + AluJo SINE Alu 1 169 -143 1716 169 55 44 chrX 4597359 4597725 -158002205 - THE1C LTR MaLR 0 375 6 713 168 67 0 chrX 4597730 4597849 -158002081 + AluJo SINE Alu 165 291 -21 281 202 149 21 chrX 4599231 4599325 -158000605 + L1MB3 LINE L1 6077 6182 -1 510 163 92 0 chrX 4600460 4600558 -157999372 + L1MB3 LINE L1 6077 6183 0 180 365 29 19 chrX 4601310 4601414 -157998516 - MIR SINE MIR -50 212 108 212 229 0 0 chrX 4601542 4601590 -157998340 - MIR SINE MIR -66 142 95 226 250 0 0 chrX 4601779 4601823 -157998107 - L2 LINE L2 -12 3260 3217 2577 184 12 5 chrX 4602216 4602645 -157997285 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chrX 4603914 4603942 -157995988 + AT_rich Low_complexity Low_complexity 1 28 0 440 18 18 0 chrX 4603990 4604047 -157995883 + (TG)n Simple_repeat Simple_repeat 1 58 0 1403 188 73 4 chrX 4604047 4604308 -157995622 - AluJo SINE Alu -33 279 1 293 316 101 40 chrX 4604797 4605075 -157994855 + L2 LINE L2 3019 3313 0 2400 110 26 42 chrX 4605501 4605882 -157994048 + THE1C LTR MaLR 1 375 0 197 350 21 10 chrX 4606016 4606113 -157993817 + MIR SINE MIR 99 196 -66 322 326 144 8 chrX 4606124 4606388 -157993542 + L2 LINE L2 3013 3312 -1 245 250 26 40 chrX 4606379 4606455 -157993475 + MIR SINE MIR 188 262 0 * 1291 162 97 65 chrX 4607556 4607726 -157992204 - AluJo SINE Alu -11 301 117 1816 170 3 0 chrX 4607726 4608015 -157991915 + AluJb SINE Alu 1 290 -22 1291 162 97 65 chrX 4608015 4608134 -157991796 - AluJo SINE Alu -195 117 3 1799 171 0 16 chrX 4608974 4609279 -157990651 + AluJo SINE Alu 2 301 -11 2614 39 7 3 chrX 4609668 4609977 -157989953 - AluY SINE Alu -1 310 1 779 211 46 17 chrX 4610011 4610186 -157989744 + MSTD LTR MaLR 215 394 -2 415 326 136 33 chrX 4610409 4610952 -157988978 - L2 LINE L2 -833 2481 1883 821 191 99 47 chrX 4611322 4611663 -157988267 + MSTD LTR MaLR 3 396 0 1517 192 3 10 chrX 4613361 4613652 -157986278 - AluJo SINE Alu -23 289 1 367 218 20 30 chrX 4613902 4614003 -157985927 - MLT1A1 LTR MaLR -263 102 3 240 276 79 0 chrX 4614020 4614096 -157985834 - L2 LINE L2 -47 3266 3185 408 252 161 13 chrX 4614590 4614745 -157985185 + L1ME1 LINE L1 5355 5532 -634 391 252 85 77 chrX 4614749 4614781 -157985149 + L1ME1 LINE L1 5681 5711 -455 2246 63 47 20 chrX 4614781 4615081 -157984849 - L1PA11 LINE L1 0 6174 5867 391 252 85 77 chrX 4615081 4615296 -157984634 + L1ME1 LINE L1 5711 5927 -239 2300 115 29 3 chrX 4616097 4616445 -157983485 + L1MA3 LINE L1 5947 6303 -2 27 22 0 22 chrX 4616661 4616681 -157983249 + AT_rich Low_complexity Low_complexity 1 20 -24 2064 115 31 3 chrX 4616681 4616967 -157982963 - AluSg SINE Alu -16 294 1 27 22 0 22 chrX 4616967 4616991 -157982939 + AT_rich Low_complexity Low_complexity 20 44 0 32 43 0 0 chrX 4617033 4617079 -157982851 + AT_rich Low_complexity Low_complexity 1 46 0 214 152 55 18 chrX 4617082 4617247 -157982683 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 346 191 52 17 chrX 4617273 4617446 -157982484 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 237 166 70 0 chrX 4617457 4617614 -157982316 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 21 57 0 0 chrX 4617765 4617800 -157982130 + AT_rich Low_complexity Low_complexity 1 35 0 204 125 0 0 chrX 4617917 4617949 -157981981 + (GA)n Simple_repeat Simple_repeat 1 32 0 3525 86 27 5 chrX 4618422 4618865 -157981065 + MLT2A2 LTR ERVL 1 453 0 233 265 12 24 chrX 4618971 4619027 -157980903 + (CATATA)n Simple_repeat Simple_repeat 2 58 -25 2593 121 14 16 chrX 4619027 4619392 -157980538 + THE1B LTR MaLR 1 364 0 233 265 12 24 chrX 4619392 4619418 -157980512 + (CATATA)n Simple_repeat Simple_repeat 58 83 0 828 78 95 0 chrX 4621973 4621996 -157977934 - L1MA2 LINE L1 -6 6298 6279 201 74 0 0 chrX 4621996 4622023 -157977907 + (TA)n Simple_repeat Simple_repeat 1 27 0 828 78 95 0 chrX 4622023 4622115 -157977815 - L1MA2 LINE L1 -25 6279 6172 447 256 8 8 chrX 4622119 4622240 -157977690 + Charlie4a DNA MER1_type 14 134 -374 384 256 40 24 chrX 4622251 4622376 -157977554 + Charlie4a DNA MER1_type 209 335 -173 832 173 0 7 chrX 4622400 4622539 -157977391 - FLAM_C SINE Alu 0 143 6 295 257 44 37 chrX 4622556 4622692 -157977238 + Charlie4a DNA MER1_type 352 488 -20 1874 181 7 0 chrX 4622937 4623246 -157976684 + AluJb SINE Alu 1 311 -1 1248 155 17 26 chrX 4624687 4624919 -157975011 - AluJo SINE Alu -82 230 1 900 155 0 0 chrX 4624919 4625048 -157974882 - AluJb SINE Alu -17 295 167 985 137 0 10 chrX 4626158 4626406 -157973524 - AluJb SINE Alu -16 296 1 620 284 12 12 chrX 4626450 4626619 -157973311 + MER5B DNA MER1_type 4 172 -6 316 288 33 79 chrX 4626693 4626933 -157972997 - HAL1 LINE L1 0 2507 2279 1839 183 0 0 chrX 4626976 4627271 -157972659 - AluJb SINE Alu -17 295 1 866 297 82 35 chrX 4627592 4627916 -157972014 - HAL1 LINE L1 -711 1796 1434 2624 118 64 10 chrX 4627916 4628322 -157971608 + MSTA LTR MaLR 1 428 0 866 297 82 35 chrX 4628322 4628560 -157971370 - HAL1 LINE L1 -1073 1434 1208 2870 126 29 6 chrX 4629407 4629885 -157970045 + MER39B LTR ERV1 1 489 -164 5047 129 15 44 chrX 4629894 4629923 -157970007 + L1PA16 LINE L1 5303 5331 -835 1883 128 14 14 chrX 4629923 4630246 -157969684 + AluSx SINE Alu 1 323 0 5047 129 15 44 chrX 4630246 4631086 -157968844 + L1PA16 LINE L1 5331 6148 -18 790 174 38 38 chrX 4631086 4631270 -157968660 + MER39B LTR ERV1 470 653 0 2117 164 96 19 chrX 4631757 4632173 -157967757 + LTR29 LTR ERV1 175 622 0 710 184 0 70 chrX 4632184 4632342 -157967588 + LTR29-int LTR ERV1 10 156 -6175 335 191 16 0 chrX 4632342 4632405 -157967525 + LTR29 LTR ERV1 559 622 0 578 261 44 54 chrX 4632440 4632533 -157967397 + MIR SINE MIR 61 153 -109 1658 205 84 70 chrX 4632533 4633030 -157966900 + MLT1D LTR MaLR 1 504 -1 578 261 44 54 chrX 4633030 4633139 -157966791 + MIR SINE MIR 153 261 -1 2245 112 0 22 chrX 4633300 4633613 -157966317 - AluSx SINE Alu -6 306 1 2325 143 28 3 chrX 4633921 4634277 -157965653 + MLT1A1 LTR MaLR 1 365 0 1363 172 62 44 chrX 4634969 4635242 -157964688 + AluJo SINE Alu 1 278 -34 270 0 0 0 chrX 4635247 4635277 -157964653 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2415 138 40 8 chrX 4636364 4636763 -157963167 + MSTA LTR MaLR 17 428 0 29 0 0 0 chrX 4637537 4637566 -157962364 + AT_rich Low_complexity Low_complexity 1 29 0 1897 152 176 16 chrX 4637573 4637942 -157961988 - MSTC LTR MaLR 0 428 1 1398 190 19 16 chrX 4638653 4639077 -157960853 + MLT1D LTR MaLR 7 485 -20 2414 72 3 3 chrX 4639413 4639719 -157960211 + AluY SINE Alu 1 306 -5 579 295 65 10 chrX 4642310 4642510 -157957420 - MER58A DNA MER1_type -9 215 5 1306 54 18 6 chrX 4643124 4643292 -157956638 - AluY SINE Alu -53 258 89 435 188 12 0 chrX 4643417 4643497 -157956433 - AluSg/x SINE Alu -57 253 173 227 135 0 0 chrX 4643497 4643534 -157956396 - Alu SINE Alu -90 213 177 * 235 158 0 0 chrX 4643526 4643564 -157956366 - Alu SINE Alu -80 220 183 1606 94 0 0 chrX 4643564 4643766 -157956164 - AluSx SINE Alu -90 222 21 259 285 183 38 chrX 4644080 4644452 -157955478 + L2 LINE L2 943 1368 -1946 259 210 97 0 chrX 4644595 4644657 -157955273 + L2 LINE L2 1934 2001 -1313 1615 318 127 20 chrX 4644980 4646182 -157953748 + L2 LINE L2 1975 3311 -2 387 288 159 0 chrX 4646541 4646704 -157953226 - Charlie8 DNA MER1_type -2137 280 92 683 195 57 63 chrX 4646983 4647142 -157952788 + AluJb SINE Alu 127 284 -28 299 275 0 44 chrX 4647245 4647336 -157952594 + L2 LINE L2 3185 3271 -1 479 266 34 17 chrX 4647436 4647613 -157952317 - MIR SINE MIR -31 231 52 21 36 0 0 chrX 4648063 4648091 -157951839 + AT_rich Low_complexity Low_complexity 1 28 0 336 102 0 0 chrX 4648091 4648140 -157951790 + (CA)n Simple_repeat Simple_repeat 2 50 0 2216 115 16 0 chrX 4649188 4649492 -157950438 - AluSx SINE Alu -2 310 2 26 0 0 0 chrX 4649631 4649657 -157950273 + AT_rich Low_complexity Low_complexity 1 26 0 441 342 76 49 chrX 4649935 4650343 -157949587 + HAL1b LINE L1 115 1617 -816 208 238 8 57 chrX 4650795 4650832 -157949098 + A-rich Low_complexity Low_complexity 4 41 -78 25 0 0 0 chrX 4650832 4650857 -157949073 + AT_rich Low_complexity Low_complexity 1 25 0 208 238 8 57 chrX 4650857 4650917 -157949013 + A-rich Low_complexity Low_complexity 41 119 0 28 48 0 0 chrX 4651001 4651043 -157948887 + AT_rich Low_complexity Low_complexity 1 42 0 244 155 42 28 chrX 4651188 4651259 -157948671 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 2039 118 0 0 chrX 4651359 4651641 -157948289 + AluSx SINE Alu 1 280 -32 226 207 0 35 chrX 4651751 4651809 -157948121 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 499 275 39 30 chrX 4652049 4652387 -157947543 + L1M4 LINE L1 2940 3280 -2866 21 89 0 0 chrX 4652468 4652524 -157947406 + AT_rich Low_complexity Low_complexity 1 56 0 471 340 70 85 chrX 4652596 4653537 -157946393 + L1M4 LINE L1 3440 4372 -1774 337 242 31 39 chrX 4654014 4654142 -157945788 + LTR33 LTR ERVL 94 220 -301 2199 109 10 0 chrX 4654294 4654587 -157945343 + AluSg SINE Alu 1 296 -14 249 277 99 21 chrX 4654632 4654773 -157945157 + L1M4 LINE L1 4942 5093 -1053 527 176 7 110 chrX 4654942 4655078 -157944852 - FLAM_A SINE Alu -11 122 1 235 293 38 63 chrX 4655392 4655513 -157944417 - L1ME LINE L1 -260 5861 5747 1500 141 41 19 chrX 4655513 4655783 -157944147 + L1PA16 LINE L1 5881 6156 -10 235 293 38 63 chrX 4655783 4655900 -157944030 - L1ME LINE L1 -374 5747 5629 1816 163 3 16 chrX 4656844 4657150 -157942780 - AluJo SINE Alu -10 302 1 672 221 67 39 chrX 4658860 4659068 -157940862 - MER20 DNA MER1_type -5 214 1 740 162 54 18 chrX 4659117 4659284 -157940646 - MER20 DNA MER1_type 0 219 47 977 220 23 19 chrX 4659356 4659570 -157940360 - MER20 DNA MER1_type -4 215 1 197 266 65 81 chrX 4659810 4659934 -157939996 - L2 LINE L2 -868 2446 2325 783 192 0 0 chrX 4660026 4660203 -157939727 + (CAT)n Simple_repeat Simple_repeat 2 178 0 389 286 56 16 chrX 4660563 4660689 -157939241 - MER5A DNA MER1_type -11 178 48 946 237 27 5 chrX 4660799 4661018 -157938912 - MER58A DNA MER1_type 0 224 1 224 292 0 15 chrX 4661520 4661585 -157938345 + L2 LINE L2 3250 3313 0 716 121 0 121 chrX 4663033 4663182 -157936748 - FRAM SINE Alu -22 154 24 1501 262 82 35 chrX 4663221 4663733 -157936197 - MLT1E LTR MaLR -3 590 55 1299 242 77 41 chrX 4663979 4664421 -157935509 - MLT1C LTR MaLR -9 458 1 25 31 0 0 chrX 4665108 4665140 -157934790 + AT_rich Low_complexity Low_complexity 1 32 0 216 143 0 0 chrX 4665669 4665711 -157934219 + (TG)n Simple_repeat Simple_repeat 1 42 0 515 273 22 57 chrX 4665891 4666044 -157933886 - MER20 DNA MER1_type 0 219 75 4128 147 1 0 chrX 4666044 4666710 -157933220 - L1PB4 LINE L1 -12 6144 5478 515 273 22 57 chrX 4666710 4666783 -157933147 - MER20 DNA MER1_type -144 75 1 21 0 0 0 chrX 4667834 4667855 -157932075 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chrX 4668349 4668381 -157931549 + (TG)n Simple_repeat Simple_repeat 1 32 0 1361 240 85 9 chrX 4668525 4668959 -157930971 + MLT1C LTR MaLR 1 467 0 23 54 0 0 chrX 4668972 4669009 -157930921 + AT_rich Low_complexity Low_complexity 1 37 0 364 220 11 0 chrX 4669019 4669110 -157930820 - L1MA9 LINE L1 -34 6278 6187 230 200 77 15 chrX 4669337 4669402 -157930528 + MIR3 SINE MIR 115 183 -25 184 293 104 9 chrX 4670039 4670145 -157929785 - L2 LINE L2 -21 3251 3136 643 229 133 0 chrX 4670631 4670797 -157929133 - MER5A DNA MER1_type -1 188 1 213 238 0 0 chrX 4670991 4671033 -157928897 - L2 LINE L2 -11 3302 3261 199 354 77 39 chrX 4671293 4671423 -157928507 - L2 LINE L2 -1 3271 3137 839 273 83 29 chrX 4671540 4672070 -157927860 - MLT1F1 LTR MaLR 0 567 2 1997 152 10 0 chrX 4672795 4673098 -157926832 + AluJb SINE Alu 5 310 -2 351 206 109 91 chrX 4674306 4674426 -157925504 + MIR SINE MIR 67 192 -70 1790 174 43 0 chrX 4674426 4674549 -157925381 + AluJo SINE Alu 1 117 -195 183 42 0 0 chrX 4674549 4674573 -157925357 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1790 174 43 0 chrX 4674573 4674748 -157925182 + AluJo SINE Alu 117 312 0 351 206 109 91 chrX 4674748 4674802 -157925128 + MIR SINE MIR 192 244 -18 186 397 65 9 chrX 4674878 4675092 -157924838 + L2 LINE L2 2750 2975 -339 2044 131 3 3 chrX 4677347 4677644 -157922286 - AluJo SINE Alu -15 297 1 1511 181 0 36 chrX 4677854 4678131 -157921799 + AluJb SINE Alu 1 267 -45 2535 46 0 3 chrX 4678844 4679147 -157920783 - AluY SINE Alu 0 311 10 1455 201 7 31 chrX 4679329 4679622 -157920308 + AluJo SINE Alu 1 286 -26 28 29 0 0 chrX 4679623 4679658 -157920272 + AT_rich Low_complexity Low_complexity 1 35 0 483 314 53 0 chrX 4680068 4680237 -157919693 + MIR SINE MIR 37 214 -48 1059 99 0 0 chrX 4680286 4680438 -157919492 + L1PA8 LINE L1 6020 6171 -1 394 160 13 0 chrX 4681153 4681228 -157918702 - MADE1 DNA Mariner -4 76 1 1061 151 0 6 chrX 4681238 4681397 -157918533 - AluJb SINE Alu -25 287 130 2276 61 41 0 chrX 4681992 4682286 -157917644 - AluY SINE Alu -5 306 1 181 245 80 123 chrX 4682875 4682998 -157916932 + MIR SINE MIR 71 187 -75 1986 143 10 0 chrX 4682998 4683291 -157916639 + AluJo SINE Alu 1 296 -16 181 245 80 123 chrX 4683291 4683330 -157916600 + MIR SINE MIR 187 226 -36 2084 130 0 0 chrX 4683554 4683838 -157916092 - AluSx SINE Alu -17 295 12 1152 105 0 0 chrX 4683849 4683992 -157915938 - AluSq/x SINE Alu -169 144 2 426 20 0 0 chrX 4687669 4687720 -157912210 + (CA)n Simple_repeat Simple_repeat 1 51 0 1635 193 3 3 chrX 4687794 4688090 -157911840 - AluJb SINE Alu -8 304 9 2147 111 23 7 chrX 4688762 4689069 -157910861 + AluSx SINE Alu 1 312 0 307 306 175 22 chrX 4690338 4690521 -157909409 - MIR SINE MIR -7 255 45 733 212 20 0 chrX 4690927 4691073 -157908857 + AluJo SINE Alu 3 151 -161 733 169 0 0 chrX 4691202 4691326 -157908604 + AluJo SINE Alu 156 279 -33 22 35 0 0 chrX 4691350 4691379 -157908551 + AT_rich Low_complexity Low_complexity 1 29 0 1018 197 96 60 chrX 4691620 4692046 -157907884 - MLT1D LTR MaLR -4 501 73 214 280 20 0 chrX 4692242 4692292 -157907638 + L2 LINE L2 3248 3298 -15 1778 183 27 0 chrX 4693062 4693362 -157906568 + AluJo SINE Alu 1 308 -4 2052 122 0 17 chrX 4694013 4694309 -157905621 - AluSx SINE Alu -17 295 5 2419 92 0 0 chrX 4694882 4695187 -157904743 - AluSc SINE Alu -4 305 1 24 0 0 0 chrX 4697239 4697263 -157902667 + AT_rich Low_complexity Low_complexity 1 24 0 1545 172 52 7 chrX 4698320 4698610 -157901320 - AluJo SINE Alu -8 304 2 239 309 12 12 chrX 4698620 4698701 -157901229 + L2 LINE L2 3227 3307 -6 211 196 87 0 chrX 4699030 4699076 -157900854 + MIR SINE MIR 92 141 -67 193 235 78 0 chrX 4699993 4700044 -157899886 + L2 LINE L2 3201 3255 -17 833 261 23 5 chrX 4700403 4700618 -157899312 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chrX 4701045 4701066 -157898864 + AT_rich Low_complexity Low_complexity 1 21 0 4440 129 13 16 chrX 4702183 4702602 -157897328 + L1PA16 LINE L1 5408 5826 -340 2599 48 3 0 chrX 4702602 4702912 -157897018 + AluY SINE Alu 1 311 0 4440 129 13 16 chrX 4702912 4703244 -157896686 + L1PA16 LINE L1 5826 6157 -9 272 338 15 15 chrX 4703692 4703825 -157896105 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 364 249 106 53 chrX 4703962 4704151 -157895779 - L1ME LINE L1 -415 5706 5508 237 83 0 0 chrX 4704201 4704237 -157895693 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 260 296 163 52 chrX 4705241 4705376 -157894554 + L2 LINE L2 3123 3272 0 203 317 0 0 chrX 4705842 4705902 -157894028 + L2 LINE L2 3249 3308 -5 211 271 122 19 chrX 4706259 4706366 -157893564 + MIR SINE MIR 28 145 -63 23 86 0 0 chrX 4706643 4706701 -157893229 + AT_rich Low_complexity Low_complexity 1 58 0 952 193 14 40 chrX 4707134 4707357 -157892573 + MER20 DNA MER1_type 3 219 0 183 222 0 0 chrX 4707379 4707424 -157892506 + GA-rich Low_complexity Low_complexity 4 48 0 * 286 130 0 58 chrX 4707417 4707486 -157892444 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 204 284 14 14 chrX 4707496 4707570 -157892360 + GA-rich Low_complexity Low_complexity 2 75 0 190 340 47 0 chrX 4707599 4707705 -157892225 - MIR SINE MIR -62 200 90 272 220 31 6 chrX 4708274 4708436 -157891494 + CT-rich Low_complexity Low_complexity 1 166 0 412 191 9 18 chrX 4708646 4708756 -157891174 + CT-rich Low_complexity Low_complexity 4 112 0 351 282 40 24 chrX 4709181 4709305 -157890625 + L1MEd LINE L1 1004 1129 -5401 440 282 74 45 chrX 4709389 4709756 -157890174 + L1MEd LINE L1 1293 1649 -4881 231 272 39 19 chrX 4709921 4710024 -157889906 + L1MEd LINE L1 1865 1969 -4571 396 295 48 39 chrX 4710855 4711100 -157888830 + L1MEd LINE L1 3336 3577 -2963 253 293 75 0 chrX 4711236 4711342 -157888588 + MER81 DNA DNA 1 114 0 462 36 0 0 chrX 4711813 4711869 -157888061 + (TG)n Simple_repeat Simple_repeat 2 57 0 676 222 116 25 chrX 4712375 4712573 -157887357 + MER20 DNA MER1_type 4 219 0 270 0 0 0 chrX 4713665 4713695 -157886235 + (TG)n Simple_repeat Simple_repeat 2 31 0 451 276 63 9 chrX 4713731 4713952 -157885978 - L1M4 LINE L1 -3597 2549 2317 1669 144 16 53 chrX 4714730 4715050 -157884880 + AluJo SINE Alu 5 312 0 589 214 231 6 chrX 4715662 4715835 -157884095 - MER20 DNA MER1_type -1 218 7 286 354 16 8 chrX 4715838 4715965 -157883965 + L2 LINE L2 3186 3313 0 228 190 17 52 chrX 4716326 4716384 -157883546 + L2 LINE L2 3257 3312 -1 3488 103 16 4 chrX 4716584 4717089 -157882841 - MER9 LTR ERVK 0 511 1 227 245 187 36 chrX 4717440 4717579 -157882351 - L2 LINE L2 0 3313 3154 22 56 0 0 chrX 4717766 4717802 -157882128 + AT_rich Low_complexity Low_complexity 1 36 0 198 167 0 0 chrX 4717943 4717979 -157881951 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1465 143 17 28 chrX 4717988 4718041 -157881889 + MLT1A1 LTR MaLR 1 53 -321 4171 99 9 41 chrX 4718041 4718533 -157881397 + L1MA2 LINE L1 5649 6115 -189 2368 78 0 3 chrX 4718533 4718828 -157881102 - AluY SINE Alu -17 294 1 4171 99 9 41 chrX 4718828 4719013 -157880917 + L1MA2 LINE L1 6115 6304 0 1465 143 17 28 chrX 4719013 4719270 -157880660 + MLT1A1 LTR MaLR 53 292 -82 529 170 7 7 chrX 4719354 4719501 -157880429 + (CATA)n Simple_repeat Simple_repeat 2 148 0 210 167 64 26 chrX 4719502 4719580 -157880350 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 214 222 32 16 chrX 4720699 4720762 -157879168 + (TG)n Simple_repeat Simple_repeat 1 64 0 180 0 0 0 chrX 4721246 4721266 -157878664 + (TC)n Simple_repeat Simple_repeat 2 21 0 1832 136 0 0 chrX 4721785 4722036 -157877894 - AluSx SINE Alu -18 294 44 653 228 91 9 chrX 4722770 4722989 -157876941 - MER46C DNA MER2_type -101 237 1 1781 147 6 26 chrX 4723176 4723516 -157876414 - L1MC1 LINE L1 -260 6073 5741 2356 179 7 2 chrX 4724261 4724718 -157875212 - L1PA16 LINE L1 0 6166 5708 24 0 0 0 chrX 4725049 4725073 -157874857 + AT_rich Low_complexity Low_complexity 1 24 0 1795 146 28 17 chrX 4725111 4725222 -157874708 + AluJb SINE Alu 11 119 -193 207 0 0 0 chrX 4725222 4725245 -157874685 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1795 146 28 17 chrX 4725245 4725421 -157874509 + AluJb SINE Alu 119 301 -11 216 390 20 30 chrX 4725496 4725596 -157874334 + L2 LINE L2 2979 3077 -195 1707 185 3 19 chrX 4725698 4726006 -157873924 + AluJo SINE Alu 1 303 -9 21 0 0 0 chrX 4727260 4727281 -157872649 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chrX 4727720 4727754 -157872176 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 1208 163 154 86 chrX 4727922 4728175 -157871755 + MLT1A1 LTR MaLR 4 287 -78 1625 192 0 24 chrX 4728175 4728466 -157871464 + AluJo SINE Alu 1 284 -28 1208 163 154 86 chrX 4728466 4728549 -157871381 + MLT1A1 LTR MaLR 287 363 -2 396 227 13 53 chrX 4728877 4729027 -157870903 + L1PA16 LINE L1 6007 6150 -16 918 178 11 0 chrX 4729097 4729282 -157870648 + L1MC3 LINE L1 6951 7137 -648 1307 96 0 11 chrX 4729288 4729466 -157870464 - AluSg/x SINE Alu 0 312 137 2383 211 52 11 chrX 4729466 4730097 -157869833 + L1MC3 LINE L1 7129 7785 0 2138 123 3 16 chrX 4730523 4730839 -157869091 - AluSx SINE Alu 0 312 1 200 205 0 0 chrX 4731441 4731480 -157868450 + (CATG)n Simple_repeat Simple_repeat 2 40 0 189 195 0 0 chrX 4731487 4731528 -157868402 + (TG)n Simple_repeat Simple_repeat 2 42 0 343 419 16 0 chrX 4732566 4732750 -157867180 + L3 LINE CR1 1380 1566 -11 1094 15 8 0 chrX 4733282 4733413 -157866517 - L1PA5 LINE L1 0 6154 6023 7283 41 0 0 chrX 4733448 4734639 -157865291 - L1PA4 LINE L1 -3 6152 4962 459 0 0 0 chrX 4735124 4735175 -157864755 + (CA)n Simple_repeat Simple_repeat 2 52 0 180 0 0 0 chrX 4735174 4735194 -157864736 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 251 219 41 41 chrX 4738290 4738363 -157861567 + LTR16C LTR ERVL 418 490 -1 1585 182 10 40 chrX 4738816 4739113 -157860817 + AluJo SINE Alu 1 288 -24 2042 222 13 33 chrX 4740121 4740643 -157859287 - MLT1A1-int LTR MaLR -1223 512 1 1790 169 11 55 chrX 4740643 4741022 -157858908 - MLT1A1 LTR MaLR 0 365 4 916 9 0 9 chrX 4742477 4742652 -157857278 + AluY SINE Alu 172 345 0 247 290 0 0 chrX 4746566 4746635 -157853295 + CT-rich Low_complexity Low_complexity 2 70 0 272 48 24 0 chrX 4746637 4746679 -157853251 + (CA)n Simple_repeat Simple_repeat 2 44 0 296 149 53 9 chrX 4747396 4747510 -157852420 + (TA)n Simple_repeat Simple_repeat 2 120 0 480 89 0 0 chrX 4748960 4749039 -157850891 + (GA)n Simple_repeat Simple_repeat 2 80 0 1798 140 3 40 chrX 4749103 4749403 -157850527 + AluJo SINE Alu 6 294 -18 1243 172 4 0 chrX 4750015 4750248 -157849682 - L1MA3 LINE L1 -1 6304 6071 1628 186 7 17 chrX 4750248 4750543 -157849387 - AluJo SINE Alu -20 292 1 600 176 26 46 chrX 4750813 4750966 -157848964 + MLT2C1 LTR ERVL 193 342 -55 455 308 108 29 chrX 4751202 4751517 -157848413 + L2 LINE L2 1552 1891 -1423 1446 181 61 3 chrX 4751782 4752108 -157847822 + MLT1A1 LTR MaLR 21 365 0 881 263 64 0 chrX 4753154 4753451 -157846479 - MER33 DNA MER1_type -8 316 1 468 291 103 56 chrX 4754444 4754912 -157845018 + MLT1H1 LTR MaLR 66 555 0 4365 118 3 6 chrX 4756289 4756948 -157842982 + L1PA13 LINE L1 5496 6152 -11 679 258 5 21 chrX 4757371 4757561 -157842369 + MER20 DNA MER1_type 31 217 -2 1167 107 31 0 chrX 4757761 4757957 -157841973 - L1PA13 LINE L1 -69 6094 5893 291 302 101 27 chrX 4758655 4758804 -157841126 - MIR SINE MIR -71 191 32 1589 197 9 22 chrX 4758949 4759264 -157840666 - AluJo SINE Alu -1 311 1 1053 231 73 105 chrX 4760107 4760752 -157839178 - MLT1E2 LTR MaLR 0 626 1 258 156 0 0 chrX 4760905 4760950 -157838980 + C-rich Low_complexity Low_complexity 1 45 0 1522 152 134 0 chrX 4760950 4761219 -157838711 - AluSx SINE Alu -6 306 2 1843 183 0 3 chrX 4761344 4761656 -157838274 - AluJo SINE Alu -1 311 1 468 0 0 0 chrX 4762396 4762448 -157837482 + (CA)n Simple_repeat Simple_repeat 2 53 0 1747 163 6 41 chrX 4762474 4762794 -157837136 - AluJo SINE Alu -3 309 1 186 171 0 0 chrX 4764225 4764266 -157835664 + (TG)n Simple_repeat Simple_repeat 2 42 0 369 75 0 0 chrX 4764634 4764687 -157835243 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chrX 4764765 4764787 -157835143 + AT_rich Low_complexity Low_complexity 1 22 0 202 304 14 0 chrX 4765544 4765613 -157834317 + (CCCGAA)n Simple_repeat Simple_repeat 6 75 0 248 297 17 114 chrX 4765894 4766069 -157833861 - L2 LINE L2 -5 3308 3151 1667 139 12 8 chrX 4766282 4766540 -157833390 + AluJo SINE Alu 34 292 -20 297 317 96 28 chrX 4767742 4768136 -157831794 - L1ME3A LINE L1 -229 5941 5521 228 267 56 11 chrX 4768166 4768256 -157831674 - L1ME3A LINE L1 -2026 4120 4027 308 331 158 19 chrX 4768293 4768716 -157831214 - L1ME3A LINE L1 -2157 3989 3508 633 266 0 33 chrX 4768882 4769066 -157830864 - MLT1E2 LTR MaLR -18 608 431 1295 140 4 44 chrX 4769344 4769594 -157830336 + L1MA9 LINE L1 5789 6028 -284 423 342 16 0 chrX 4770517 4770710 -157829220 - HAL1 LINE L1 -921 1586 1391 299 358 22 17 chrX 4773112 4773291 -157826639 - MER5A DNA MER1_type -9 180 1 975 215 51 78 chrX 4773492 4773947 -157825983 + MER39 LTR ERV1 68 565 0 213 121 0 0 chrX 4774082 4774115 -157825815 + (TA)n Simple_repeat Simple_repeat 2 34 0 2014 94 33 14 chrX 4774163 4774438 -157825492 - AluSx SINE Alu -32 280 1 23 33 0 0 chrX 4774477 4774507 -157825423 + AT_rich Low_complexity Low_complexity 1 30 0 883 144 0 8 chrX 4774636 4774768 -157825162 + FLAM_A SINE Alu 2 132 -1 184 365 50 25 chrX 4775686 4775845 -157824085 - L2 LINE L2 -844 2470 2308 183 80 0 0 chrX 4776561 4776586 -157823344 + (CATA)n Simple_repeat Simple_repeat 3 27 0 434 33 17 0 chrX 4776636 4776696 -157823234 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 330 26 0 0 chrX 4776792 4776831 -157823099 + (TG)n Simple_repeat Simple_repeat 1 39 0 560 278 90 75 chrX 4776896 4777261 -157822669 + L1MC5 LINE L1 6820 7193 -768 2129 145 24 19 chrX 4777261 4777634 -157822296 - THE1C LTR MaLR 0 375 1 560 278 90 75 chrX 4777634 4777656 -157822274 + L1MC5 LINE L1 7193 7213 -748 816 65 0 0 chrX 4777683 4777790 -157822140 + (TA)n Simple_repeat Simple_repeat 1 107 0 208 310 17 0 chrX 4778675 4778733 -157821197 + MIR SINE MIR 30 88 -120 218 320 10 31 chrX 4779717 4779814 -157820116 + L2 LINE L2 3173 3267 -5 2256 90 7 0 chrX 4780484 4780784 -157819146 - AluY SINE Alu -9 302 1 184 250 19 0 chrX 4781035 4781087 -157818843 + L2 LINE L2 1703 1755 -1559 309 89 0 0 chrX 4782218 4782263 -157817667 + (TG)n Simple_repeat Simple_repeat 1 45 0 1269 161 0 18 chrX 4782379 4782603 -157817327 - AluJo SINE Alu -52 260 41 354 143 0 0 chrX 4782710 4782773 -157817157 + (TG)n Simple_repeat Simple_repeat 2 64 0 775 130 0 9 chrX 4782858 4782973 -157816957 + FRAM SINE Alu 42 155 -21 236 191 106 21 chrX 4783215 4783309 -157816621 + L1MC5 LINE L1 7452 7553 -408 2124 122 3 0 chrX 4784453 4784748 -157815182 + AluSx SINE Alu 1 296 -16 2174 243 75 13 chrX 4785363 4786128 -157813802 + L1MC3 LINE L1 6974 7785 0 766 158 8 0 chrX 4787104 4787231 -157812699 + FLAM_C SINE Alu 2 129 -4 2329 84 7 0 chrX 4787758 4788054 -157811876 + AluSp SINE Alu 1 298 -15 341 262 68 0 chrX 4788060 4788163 -157811767 + MIR3 SINE MIR 94 203 -5 2078 107 57 0 chrX 4788368 4788648 -157811282 - AluSx SINE Alu -14 298 3 1400 199 34 38 chrX 4789281 4789572 -157810358 - AluJo SINE Alu -22 290 1 185 180 20 0 chrX 4789675 4789725 -157810205 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chrX 4789860 4789888 -157810042 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrX 4790965 4791000 -157808930 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 224 30 0 chrX 4791502 4791569 -157808361 + (TA)n Simple_repeat Simple_repeat 2 70 0 309 183 0 0 chrX 4791606 4791666 -157808264 + (TA)n Simple_repeat Simple_repeat 1 60 0 929 158 0 16 chrX 4791794 4791977 -157807953 + CT-rich Low_complexity Low_complexity 1 180 0 844 168 6 6 chrX 4791996 4792175 -157807755 + CT-rich Low_complexity Low_complexity 1 179 0 240 318 68 11 chrX 4793334 4793422 -157806508 - L2 LINE L2 -291 2981 2889 23 33 0 0 chrX 4794067 4794097 -157805833 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chrX 4795235 4795279 -157804651 + AT_rich Low_complexity Low_complexity 1 44 0 2057 126 7 0 chrX 4795371 4795656 -157804274 + AluSx SINE Alu 1 287 -25 219 114 0 0 chrX 4796401 4796436 -157803494 + (TG)n Simple_repeat Simple_repeat 2 36 0 1869 243 50 24 chrX 4796454 4797157 -157802773 - L1M4 LINE L1 -1304 4842 4122 340 295 18 36 chrX 4797685 4797797 -157802133 - L1MC4 LINE L1 -1319 6723 6614 1636 249 96 41 chrX 4797800 4798012 -157801918 - MLT2F LTR ERVL -44 619 420 1834 190 22 3 chrX 4798012 4798370 -157801560 + MLT1A1 LTR MaLR 1 365 0 1636 249 96 41 chrX 4798370 4798740 -157801190 - MLT2F LTR ERVL -243 420 5 542 299 19 52 chrX 4799687 4799813 -157800117 - MIR SINE MIR -22 240 122 2326 93 0 13 chrX 4799813 4800123 -157799807 + AluSc SINE Alu 1 306 -3 542 299 19 52 chrX 4800123 4800207 -157799723 - MIR SINE MIR -140 122 37 230 226 139 26 chrX 4800444 4800559 -157799371 + L1MEc LINE L1 44 171 -6225 978 246 139 3 chrX 4800804 4801121 -157798809 - MLT1A1 LTR MaLR -5 360 1 2397 113 52 0 chrX 4801586 4801932 -157797998 - THE1B LTR MaLR 0 364 1 1679 180 34 55 chrX 4802145 4802583 -157797347 + L1MC3 LINE L1 6673 7101 -684 1825 118 33 13 chrX 4802607 4802911 -157797019 + MSTA LTR MaLR 118 427 -1 1210 137 49 0 chrX 4802912 4803116 -157796814 + L1MC3 LINE L1 7099 7312 -473 1719 151 3 34 chrX 4803450 4803748 -157796182 + AluJb SINE Alu 3 291 -21 222 132 59 29 chrX 4803757 4803825 -157796105 + (TA)n Simple_repeat Simple_repeat 1 70 0 2260 73 39 3 chrX 4803836 4804122 -157795808 + AluSc SINE Alu 1 296 -13 1538 194 18 7 chrX 4804155 4804438 -157795492 + AluJo SINE Alu 1 286 -26 390 91 0 0 chrX 4804439 4804494 -157795436 + (CA)n Simple_repeat Simple_repeat 2 56 0 2001 98 42 0 chrX 4804527 4804812 -157795118 - AluSq SINE Alu -16 297 1 2040 155 0 0 chrX 4804820 4805116 -157794814 - AluSx SINE Alu -16 296 1 912 304 43 11 chrX 4805502 4805778 -157794152 + MLT1E LTR MaLR 280 564 -29 1222 204 5 14 chrX 4806382 4806603 -157793327 - MER20 DNA MER1_type 0 219 1 228 256 61 12 chrX 4806747 4806829 -157793101 - MER20B DNA MER1_type -633 150 65 366 23 0 0 chrX 4807171 4807214 -157792716 + (TG)n Simple_repeat Simple_repeat 1 43 0 2029 152 0 0 chrX 4807301 4807610 -157792320 - AluSx SINE Alu -2 310 2 414 161 35 0 chrX 4807617 4807704 -157792226 - L1MB3 LINE L1 0 6183 6094 294 125 0 0 chrX 4808298 4808346 -157791584 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chrX 4808349 4808388 -157791542 + (CA)n Simple_repeat Simple_repeat 1 39 0 4109 26 11 0 chrX 4808831 4809298 -157790632 - L1PA4 LINE L1 -3 6152 5681 2019 134 7 16 chrX 4809464 4809771 -157790159 - AluSx SINE Alu -7 305 2 1960 156 0 9 chrX 4810409 4810724 -157789206 - AluSx SINE Alu 0 312 1 210 71 0 0 chrX 4810853 4810881 -157789049 + (GA)n Simple_repeat Simple_repeat 2 29 0 304 289 68 55 chrX 4811326 4811548 -157788382 + MER106B DNA MER1_type 7 1058 -1 1962 150 0 3 chrX 4811716 4812022 -157787908 + AluJo SINE Alu 1 305 -7 1276 284 26 7 chrX 4812089 4812512 -157787418 + MER63B DNA MER1_type 6 436 0 1356 188 12 0 chrX 4812988 4813370 -157786560 + L1P5 LINE L1 5096 5480 -676 1698 168 46 7 chrX 4814797 4815082 -157784848 + AluJo SINE Alu 1 296 -16 1616 190 3 3 chrX 4816855 4817144 -157782786 - AluJb SINE Alu -23 289 1 214 143 32 16 chrX 4817952 4818015 -157781915 + CT-rich Low_complexity Low_complexity 1 64 0 1648 141 0 77 chrX 4818029 4818346 -157781584 - AluJo SINE Alu 0 450 165 2024 118 40 0 chrX 4818346 4818642 -157781288 - AluSq SINE Alu -5 308 1 1648 141 0 77 chrX 4818642 4818784 -157781146 - AluJo SINE Alu -285 165 14 834 236 75 30 chrX 4818952 4819247 -157780683 + MER58 DNA MER1_type 12 2420 0 2604 173 24 4 chrX 4821224 4821676 -157778254 - L1PA16 LINE L1 0 6166 5706 201 74 0 0 chrX 4822080 4822107 -157777823 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 238 12 0 chrX 4822111 4822191 -157777739 + (CA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chrX 4822922 4822945 -157776985 + AT_rich Low_complexity Low_complexity 1 23 0 432 282 99 15 chrX 4823131 4823341 -157776589 + MLT1E1 LTR MaLR 15 244 -410 1645 235 121 50 chrX 4823410 4823964 -157775966 + MLT1E LTR MaLR 1 593 0 1099 293 56 58 chrX 4825077 4825596 -157774334 - MLT1E LTR MaLR -5 588 102 339 209 32 0 chrX 4825587 4825660 -157774270 - MLT1E LTR MaLR -430 137 64 * 360 298 43 31 chrX 4825838 4825999 -157773931 + MIR3 SINE MIR 44 206 -2 1073 212 23 46 chrX 4826061 4826368 -157773562 + MER33 DNA MER1_type 15 314 -10 250 337 12 65 chrX 4827071 4827240 -157772690 + MER5B DNA MER1_type 19 178 0 21 0 0 0 chrX 4827579 4827600 -157772330 + AT_rich Low_complexity Low_complexity 1 21 0 1057 149 8 2 chrX 4827873 4828063 -157771867 + L1PA16 LINE L1 5646 5835 -331 637 278 45 18 chrX 4828180 4828403 -157771527 - LTR16B LTR ERVL -231 233 5 1653 137 9 0 chrX 4828804 4829082 -157770848 - L1PA16 LINE L1 -196 5959 5669 1210 129 144 0 chrX 4829075 4829276 -157770654 + L1PA16 LINE L1 5928 6157 -9 * 688 414 99 39 chrX 4829680 4830062 -157769868 - MLT1C LTR MaLR -60 407 3 221 56 0 28 chrX 4830838 4830874 -157769056 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 626 65 0 2 chrX 4830874 4830959 -157768971 - L1PA3 LINE L1 -20 6148 6059 537 263 120 62 chrX 4831470 4831938 -157767992 - L1MC/D LINE L1 -1986 5822 5328 1839 155 10 0 chrX 4832052 4832349 -157767581 - MLT1B LTR MaLR 0 390 91 1753 188 14 51 chrX 4832353 4832570 -157767360 - MER2 DNA MER2_type -1 344 144 1798 180 30 35 chrX 4832570 4832909 -157767021 - MER1B DNA MER1_type 0 337 1 1753 188 14 51 chrX 4832909 4833047 -157766883 - MER2 DNA MER2_type -201 144 2 415 197 13 0 chrX 4833048 4833124 -157766806 - MLT1B LTR MaLR -303 87 11 1025 231 14 24 chrX 4833162 4833427 -157766503 + MLT2C1 LTR ERVL 99 429 -35 225 191 55 45 chrX 4833453 4833563 -157766367 + (TATAA)n Simple_repeat Simple_repeat 4 114 0 250 138 0 31 chrX 4833564 4833629 -157766301 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 232 130 65 43 chrX 4833640 4833732 -157766198 + (TA)n Simple_repeat Simple_repeat 2 95 0 202 155 50 37 chrX 4833826 4833987 -157765943 + (TA)n Simple_repeat Simple_repeat 1 163 0 1107 135 0 12 chrX 4833998 4834161 -157765769 - AluJb SINE Alu -18 294 134 253 140 0 140 chrX 4834175 4834232 -157765698 + MLT2C1 LTR ERVL 354 397 0 3050 76 95 0 chrX 4834438 4834847 -157765083 - LTR7 LTR ERV1 -2 448 1 2179 106 70 14 chrX 4834847 4835216 -157764714 - HERVH LTR ERV1 0 7713 7324 1430 119 18 9 chrX 4835216 4835434 -157764496 - HERVH LTR ERV1 -1894 5819 5600 4431 138 1 1 chrX 4835435 4836097 -157763833 - HERVH LTR ERV1 -2564 5149 4488 3522 97 4 4 chrX 4836099 4836593 -157763337 - HERVH LTR ERV1 -3720 3993 3500 869 155 20 0 chrX 4836592 4836740 -157763190 - HERVH LTR ERV1 -4423 3290 3140 * 20331 92 14 23 chrX 4836734 4839749 -157760181 - HERVH LTR ERV1 -4726 2987 1 3065 73 95 0 chrX 4839751 4840160 -157759770 - LTR7 LTR ERV1 -2 448 1 1532 196 96 25 chrX 4840286 4840649 -157759281 - MLT1B LTR MaLR -1 389 1 189 0 0 0 chrX 4842800 4842821 -157757109 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 323 0 0 chrX 4844135 4844197 -157755733 + L2 LINE L2 3209 3270 -2 184 280 147 87 chrX 4844584 4844734 -157755196 - MIR SINE MIR -91 171 13 470 274 144 45 chrX 4844907 4845108 -157754822 - MLT1E LTR MaLR -206 387 167 314 289 24 0 chrX 4845139 4845222 -157754708 - MLT1E LTR MaLR -457 85 1 2303 114 33 43 chrX 4845469 4845837 -157754093 - THE1B LTR MaLR 0 364 1 443 63 16 0 chrX 4845916 4845979 -157753951 + (ATG)n Simple_repeat Simple_repeat 2 65 0 199 301 217 18 chrX 4846341 4846507 -157753423 - MIR SINE MIR -1 261 63 203 284 11 23 chrX 4847270 4847358 -157752572 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 693 308 101 27 chrX 4847421 4847895 -157752035 + Tigger8 DNA MER2_type 149 657 -9 23 33 0 0 chrX 4847992 4848022 -157751908 + AT_rich Low_complexity Low_complexity 1 30 0 2807 94 8 6 chrX 4848066 4848429 -157751501 - THE1B LTR MaLR 0 364 1 1729 173 0 10 chrX 4848767 4849062 -157750868 - AluJo SINE Alu -13 299 8 24 32 0 0 chrX 4849978 4850009 -157749921 + AT_rich Low_complexity Low_complexity 1 31 0 2240 106 0 3 chrX 4850141 4850433 -157749497 - AluSc SINE Alu -18 291 1 186 234 0 21 chrX 4851391 4851438 -157748492 + MER5A DNA MER1_type 11 56 -133 257 98 0 78 chrX 4851442 4851493 -157748437 - L1P LINE L1 -729 5427 5381 * 3331 179 20 38 chrX 4851489 4851542 -157748388 + L1MA4A LINE L1 5442 5494 -809 2232 113 3 3 chrX 4851542 4851853 -157748077 + AluSx SINE Alu 1 311 -1 3331 179 20 38 chrX 4851853 4852492 -157747438 + L1MA4A LINE L1 5494 6122 -181 451 196 11 0 chrX 4852495 4852592 -157747338 + L1MA4A LINE L1 6058 6278 -1 219 250 296 0 chrX 4852604 4852692 -157747238 + MER5A DNA MER1_type 63 176 -13 1442 247 80 30 chrX 4853267 4853765 -157746165 - Charlie1b DNA MER1_type 0 523 1 254 239 0 0 chrX 4853934 4853980 -157745950 - MER45 DNA AcHobo -21 1560 1515 1313 116 5 53 chrX 4853986 4854193 -157745737 + AluJo SINE Alu 87 283 -29 277 80 20 20 chrX 4854195 4854245 -157745685 + (TA)n Simple_repeat Simple_repeat 1 50 0 297 159 0 63 chrX 4854265 4854328 -157745602 - MER45 DNA AcHobo -74 104 46 626 332 48 45 chrX 4854403 4854918 -157745012 - L1MCc LINE L1 -5245 1178 662 1949 159 47 31 chrX 4855040 4855584 -157744346 - MLT2A2 LTR ERVL 0 554 1 965 143 0 45 chrX 4855687 4855841 -157744089 - AluJo SINE Alu -9 303 157 593 159 9 9 chrX 4855841 4855948 -157743982 - AluJo SINE Alu -204 108 2 415 286 32 0 chrX 4855948 4856074 -157743856 - L1MCc LINE L1 -5953 470 341 375 214 27 0 chrX 4856086 4856198 -157743732 - LTR37A LTR ERV1 -11 415 301 333 223 66 33 chrX 4856364 4856485 -157743445 - LTR37A LTR ERV1 -252 174 50 240 35 0 0 chrX 4857454 4857483 -157742447 + (T)n Simple_repeat Simple_repeat 1 29 0 1542 157 6 60 chrX 4858451 4858628 -157741302 - AluJo SINE Alu -2 310 156 2237 106 0 7 chrX 4858628 4858931 -157740999 - AluSg SINE Alu -9 301 1 1542 157 6 60 chrX 4858931 4859071 -157740859 - AluJo SINE Alu -156 156 10 452 323 25 12 chrX 4859119 4859280 -157740650 + MIR SINE MIR 31 193 -69 1822 166 3 19 chrX 4860290 4860604 -157739326 - AluJo SINE Alu -3 309 1 325 248 51 76 chrX 4860988 4861145 -157738785 - HAL1b LINE L1 -864 484 332 299 357 116 61 chrX 4861747 4862125 -157737805 + L2 LINE L2 2824 3222 -50 218 286 82 20 chrX 4862438 4862536 -157737394 - MIR SINE MIR -54 208 105 1410 185 66 44 chrX 4863216 4863578 -157736352 - MLT1A2 LTR MaLR 0 374 5 5346 81 1 1 chrX 4863626 4864317 -157735613 - LTR8 LTR ERV1 0 691 1 207 0 0 0 chrX 4864900 4864923 -157735007 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2674 78 19 3 chrX 4864923 4865288 -157734642 - L1PA10 LINE L1 -17 6151 5778 1249 232 92 22 chrX 4865451 4865676 -157734254 - MSTD LTR MaLR 0 396 133 2140 95 0 3 chrX 4865676 4866010 -157733920 + AluSg1 SINE Alu 1 333 0 1249 232 92 22 chrX 4866010 4866153 -157733777 - MSTD LTR MaLR -263 133 1 1892 161 17 0 chrX 4866168 4866467 -157733463 + AluJo SINE Alu 1 304 -8 2231 121 0 6 chrX 4866467 4866781 -157733149 + AluSx SINE Alu 1 312 0 335 248 172 7 chrX 4867227 4867372 -157732558 + MLT1J1 LTR MaLR 3 171 -275 356 0 23 0 chrX 4867528 4867572 -157732358 + (TA)n Simple_repeat Simple_repeat 1 45 0 2618 93 11 16 chrX 4868812 4869189 -157730741 + THE1C LTR MaLR 1 375 0 345 140 0 0 chrX 4871118 4871175 -157728755 + (TA)n Simple_repeat Simple_repeat 2 58 0 459 92 0 0 chrX 4871797 4871862 -157728068 + (T)n Simple_repeat Simple_repeat 1 65 0 208 85 43 43 chrX 4872040 4872087 -157727843 + A-rich Low_complexity Low_complexity 5 51 0 324 335 188 0 chrX 4875759 4875929 -157724001 + MIR SINE MIR 1 202 -60 237 315 134 20 chrX 4876196 4876345 -157723585 + MIR SINE MIR 47 212 -50 228 250 0 0 chrX 4876565 4876625 -157723305 + (TA)n Simple_repeat Simple_repeat 2 61 0 297 366 36 32 chrX 4877106 4877357 -157722573 - L2 LINE L2 -467 2847 2596 233 128 21 0 chrX 4877399 4877446 -157722484 + GA-rich Low_complexity Low_complexity 4 51 0 987 180 120 0 chrX 4877670 4877853 -157722077 + AluJb SINE Alu 92 296 -16 228 398 8 16 chrX 4878734 4878862 -157721068 - MER5A DNA MER1_type 0 189 63 222 222 0 0 chrX 4880307 4880397 -157719533 + (TA)n Simple_repeat Simple_repeat 1 90 0 298 298 11 6 chrX 4881535 4881713 -157718217 + (TA)n Simple_repeat Simple_repeat 1 179 0 201 167 0 0 chrX 4881726 4881780 -157718150 + (TA)n Simple_repeat Simple_repeat 1 54 0 401 236 180 75 chrX 4882469 4882630 -157717300 + MER5A DNA MER1_type 11 188 -1 1219 151 0 0 chrX 4883040 4883225 -157716705 - AluJo SINE Alu -10 302 118 443 52 0 0 chrX 4883233 4883291 -157716639 + MADE1 DNA Mariner 22 79 -1 563 225 0 17 chrX 4883294 4883414 -157716516 - AluJo SINE Alu -184 118 1 1369 223 74 28 chrX 4883430 4883860 -157716070 - MLT1C LTR MaLR 0 467 18 2130 134 0 3 chrX 4884337 4884642 -157715288 + AluSx SINE Alu 1 304 -8 264 219 8 125 chrX 4885112 4885194 -157714736 - L1M LINE L1 -2379 5429 5366 1967 115 0 0 chrX 4885194 4885482 -157714448 - L1PA13 LINE L1 -3 6160 5873 264 219 8 125 chrX 4885482 4885527 -157714403 - L1M LINE L1 -2442 5366 5317 719 323 52 41 chrX 4885563 4886079 -157713851 - L1M4 LINE L1 -867 5279 4755 1877 125 80 0 chrX 4886079 4886368 -157713562 - AluSx SINE Alu 0 312 1 719 323 52 41 chrX 4886368 4886389 -157713541 - L1M4 LINE L1 -1391 4755 4736 669 166 0 0 chrX 4886607 4886752 -157713178 + GA-rich Low_complexity Low_complexity 1 145 0 180 77 0 0 chrX 4887523 4887549 -157712381 + (ATGGTG)n Simple_repeat Simple_repeat 3 28 0 22 56 0 0 chrX 4888085 4888121 -157711809 + AT_rich Low_complexity Low_complexity 1 36 0 1828 142 76 0 chrX 4889135 4889410 -157710520 - AluSg SINE Alu -14 296 1 991 142 108 48 chrX 4890399 4890540 -157709390 - L1MA8 LINE L1 -5 6286 6155 3125 88 12 2 chrX 4890540 4890970 -157708960 - MER57B LTR ERV1 0 434 1 991 142 108 48 chrX 4890970 4891096 -157708834 - L1MA8 LINE L1 -136 6155 6003 427 90 30 0 chrX 4891097 4891164 -157708766 + L1MA8 LINE L1 5908 5976 -336 656 238 83 0 chrX 4891537 4891718 -157708212 - MER58A DNA MER1_type 0 224 29 597 302 87 8 chrX 4892466 4892708 -157707222 + MIR SINE MIR 2 262 0 300 229 0 0 chrX 4896311 4896381 -157703549 - MER103 DNA DNA -87 79 10 358 359 48 7 chrX 4898563 4898836 -157701094 - L1MEd LINE L1 -3716 2413 2130 233 262 0 24 chrX 4899385 4899469 -157700461 - HAL1 LINE L1 -922 1585 1504 485 99 0 0 chrX 4899754 4899825 -157700105 - Alu SINE Alu -12 297 227 1135 172 0 0 chrX 4899825 4900005 -157699925 - AluJo SINE Alu -132 180 1 359 272 80 25 chrX 4900017 4900179 -157699751 - L1MEd LINE L1 -5017 1102 932 320 343 71 26 chrX 4900357 4900780 -157699150 - L1MEd LINE L1 -5300 819 378 303 337 94 30 chrX 4900935 4901137 -157698793 - L1MEd LINE L1 -5901 218 4 994 142 0 0 chrX 4902380 4902521 -157697409 - FRAM SINE Alu -24 152 12 1658 153 53 7 chrX 4902539 4902821 -157697109 - AluJo SINE Alu -17 295 1 1189 153 44 48 chrX 4902866 4903114 -157696816 + AluJo SINE Alu 41 287 -25 285 67 22 0 chrX 4904201 4904246 -157695684 + MADE1 DNA Mariner 1 46 -34 369 0 0 0 chrX 4904797 4904838 -157695092 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chrX 4904837 4904864 -157695066 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 180 0 0 0 chrX 4905325 4905345 -157694585 + (TG)n Simple_repeat Simple_repeat 1 20 0 336 24 0 0 chrX 4905348 4905389 -157694541 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chrX 4906210 4906231 -157693699 + AT_rich Low_complexity Low_complexity 1 21 0 762 253 98 83 chrX 4906320 4906767 -157693163 - MER20B DNA MER1_type -140 643 190 273 309 45 54 chrX 4906768 4906991 -157692939 - MER20B DNA MER1_type -553 230 10 985 105 0 0 chrX 4907181 4907305 -157692625 - AluSq/x SINE Alu -188 124 1 25 0 0 0 chrX 4907545 4907570 -157692360 + AT_rich Low_complexity Low_complexity 1 25 0 7783 30 1 1 chrX 4907616 4908513 -157691417 - MER11D LTR ERVK 0 897 1 1414 260 189 36 chrX 4908749 4909664 -157690266 + Charlie1 DNA MER1_type 2 2353 -408 2485 142 34 5 chrX 4909969 4910385 -157689545 - MSTA LTR MaLR 0 428 1 2091 127 7 10 chrX 4910607 4910915 -157689015 - AluSx SINE Alu -5 307 1 3909 179 42 23 chrX 4910915 4911793 -157688137 - L1MC1 LINE L1 -6 6327 5433 1945 186 13 5 chrX 4911885 4912267 -157687663 + MLT1B LTR MaLR 6 390 0 2547 51 0 0 chrX 4912299 4912594 -157687336 - AluY SINE Alu -16 295 1 23 54 0 0 chrX 4912725 4912762 -157687168 + AT_rich Low_complexity Low_complexity 1 37 0 2059 67 82 0 chrX 4913050 4913332 -157686598 - AluY SINE Alu -6 305 1 392 291 44 25 chrX 4914748 4914906 -157685024 + LTR16A1 LTR ERVL 7 167 -290 267 246 0 0 chrX 4914967 4915032 -157684898 + LTR16A1 LTR ERVL 392 456 -1 370 308 70 42 chrX 4916016 4916230 -157683700 + MIR SINE MIR 9 228 -34 298 132 66 59 chrX 4916276 4916412 -157683518 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 273 29 0 0 chrX 4916426 4916460 -157683470 + (TC)n Simple_repeat Simple_repeat 1 34 0 386 225 36 0 chrX 4916463 4916574 -157683356 - L1MC4 LINE L1 -1314 6728 6614 347 0 0 23 chrX 4916617 4916661 -157683269 + (CA)n Simple_repeat Simple_repeat 2 44 0 249 93 56 0 chrX 4917701 4917755 -157682175 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 536 90 41 28 chrX 4917787 4917932 -157681998 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 314 296 120 19 chrX 4918025 4918400 -157681530 - L1ME LINE L1 -388 5765 5350 205 300 11 0 chrX 4918489 4918579 -157681351 + (TA)n Simple_repeat Simple_repeat 1 91 0 343 290 76 37 chrX 4918722 4919129 -157680801 - L1ME LINE L1 -1031 5098 4676 29 90 0 0 chrX 4919137 4919215 -157680715 + AT_rich Low_complexity Low_complexity 1 78 0 390 279 73 46 chrX 4919433 4920025 -157679905 - L1ME LINE L1 -4866 1253 646 255 279 13 0 chrX 4920568 4920647 -157679283 - L1ME LINE L1 -6011 108 29 595 300 112 11 chrX 4920901 4921188 -157678742 + L2 LINE L2 2994 3309 -4 2093 135 3 3 chrX 4921351 4921648 -157678282 + AluSx SINE Alu 1 297 -15 240 35 0 0 chrX 4921648 4921677 -157678253 + (TA)n Simple_repeat Simple_repeat 1 29 0 289 270 6 6 chrX 4921698 4921876 -157678054 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 374 257 0 12 chrX 4921892 4922063 -157677867 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 299 298 0 0 chrX 4922063 4922157 -157677773 + (TA)n Simple_repeat Simple_repeat 2 95 0 26 82 0 0 chrX 4922203 4922264 -157677666 + AT_rich Low_complexity Low_complexity 1 61 0 1294 149 57 50 chrX 4922350 4922612 -157677318 - AluJo SINE Alu -48 264 1 22 0 0 0 chrX 4923238 4923260 -157676670 + AT_rich Low_complexity Low_complexity 1 22 0 1782 175 0 46 chrX 4923319 4923645 -157676285 - AluJb SINE Alu -1 311 1 701 216 25 49 chrX 4925328 4925532 -157674398 + L1MB2 LINE L1 5851 6049 -122 1774 175 3 33 chrX 4925532 4925831 -157674099 + L1PA15 LINE L1 5816 6104 -61 1808 133 67 25 chrX 4925831 4926191 -157673739 - THE1C LTR MaLR 0 375 1 1774 175 3 33 chrX 4926191 4926251 -157673679 + L1PA15 LINE L1 6104 6164 -1 510 167 44 18 chrX 4926254 4926368 -157673562 + L1MB2 LINE L1 6054 6170 -1 1958 143 44 0 chrX 4926611 4926904 -157673026 - AluJb SINE Alu -2 310 5 265 263 0 18 chrX 4927942 4927999 -157671931 + MER58 DNA MER1_type 1 56 -168 3047 103 33 2 chrX 4928043 4928499 -157671431 + L1PA13 LINE L1 5692 6161 -2 240 195 49 98 chrX 4928507 4928589 -157671341 + MER58 DNA MER1_type 2318 2395 -25 187 215 0 21 chrX 4930084 4930177 -157669753 + CT-rich Low_complexity Low_complexity 1 91 0 1868 133 39 19 chrX 4930206 4930567 -157669363 + L1MA2 LINE L1 5903 6270 -34 314 258 0 43 chrX 4930629 4930722 -157669208 + L1MC4 LINE L1 6614 6702 -1340 230 191 0 32 chrX 4930725 4930788 -157669142 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 375 62 234 0 chrX 4930788 4930852 -157669078 + MADE1 DNA Mariner 1 79 -1 1382 196 64 57 chrX 4930887 4931183 -157668747 - MLT2C2 LTR ERVL -73 391 90 1485 171 23 48 chrX 4931183 4931493 -157668437 + AluJo SINE Alu 1 302 -10 1382 196 64 57 chrX 4931493 4931584 -157668346 - MLT2C2 LTR ERVL -374 90 1 809 120 0 0 chrX 4931619 4931744 -157668186 - L1PB3 LINE L1 -1 6153 6029 3739 107 20 118 chrX 4931844 4932683 -157667247 - L1PB3 LINE L1 -121 6033 5277 1016 234 75 51 chrX 4933312 4933770 -157666160 - MLT1C LTR MaLR -1 466 1 298 230 115 22 chrX 4933781 4933920 -157666010 - MLT1C LTR MaLR -124 343 192 1881 116 53 11 chrX 4934185 4934470 -157665460 - AluJo SINE Alu -15 297 1 438 255 99 36 chrX 4937348 4937521 -157662409 + MER20 DNA MER1_type 12 200 -19 4104 102 30 19 chrX 4937521 4938149 -157661781 - MER41B LTR ERV1 0 635 1 438 255 99 36 chrX 4938149 4938167 -157661763 + MER20 DNA MER1_type 200 215 -4 266 361 30 0 chrX 4939146 4939279 -157660651 + MIR3 SINE MIR 65 201 -7 203 217 29 0 chrX 4939450 4939519 -157660411 + (TA)n Simple_repeat Simple_repeat 1 71 0 1883 210 40 9 chrX 4939541 4939971 -157659959 - MLT2B2 LTR ERVL -39 515 3 1881 157 10 3 chrX 4941138 4941437 -157658493 - AluSx SINE Alu -11 301 1 2222 115 0 3 chrX 4942019 4942314 -157657616 - AluSx SINE Alu -18 294 1 512 131 0 0 chrX 4942540 4942624 -157657306 + L1MA2 LINE L1 6161 6244 -60 2165 134 0 0 chrX 4944401 4944743 -157655187 - AluSx SINE Alu 0 342 1 211 338 188 4 chrX 4945296 4945562 -157654368 + L2 LINE L2 2566 2880 -434 221 298 61 44 chrX 4945622 4945736 -157654194 + MER5A DNA MER1_type 74 189 0 267 54 0 0 chrX 4947531 4947568 -157652362 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 736 188 8 0 chrX 4947929 4948057 -157651873 + FLAM_A SINE Alu 1 129 -4 189 350 51 35 chrX 4948170 4948355 -157651575 - MIR SINE MIR -17 245 57 2198 128 0 0 chrX 4948865 4949161 -157650769 + AluSx SINE Alu 1 296 -16 1741 160 23 23 chrX 4949262 4949606 -157650324 - MLT1B LTR MaLR -46 344 1 306 123 0 0 chrX 4950048 4950105 -157649825 + (GA)n Simple_repeat Simple_repeat 2 58 0 559 200 15 7 chrX 4950764 4950899 -157649031 - L1MB7 LINE L1 -218 5966 5831 230 216 82 0 chrX 4950899 4950996 -157648934 + (TA)n Simple_repeat Simple_repeat 1 105 0 3646 131 35 11 chrX 4951504 4951856 -157648074 + L1MC1 LINE L1 5693 6068 -265 373 88 176 0 chrX 4951856 4951924 -157648006 - MADE1 DNA Mariner 0 80 1 3646 131 35 11 chrX 4951924 4952195 -157647735 + L1MC1 LINE L1 6068 6331 -2 381 225 0 0 chrX 4952336 4952416 -157647514 + L1MC1 LINE L1 6240 6319 -14 1899 155 39 130 chrX 4952439 4952863 -157647067 + L1PA16 LINE L1 5651 6013 -153 2696 38 0 0 chrX 4952863 4953181 -157646749 + AluYb8 SINE Alu 1 318 0 1899 155 39 130 chrX 4953181 4953318 -157646612 + L1PA16 LINE L1 6013 6161 -5 22 0 0 0 chrX 4954941 4954963 -157644967 + AT_rich Low_complexity Low_complexity 1 22 0 221 312 58 45 chrX 4955455 4955631 -157644299 - L2 LINE L2 -268 3004 2825 1073 158 0 0 chrX 4955646 4955810 -157644120 + FRAM SINE Alu 1 163 -13 244 244 26 39 chrX 4955860 4955938 -157643992 + L2 LINE L2 2691 2767 -547 2353 125 100 5 chrX 4955942 4956333 -157643597 + MSTA LTR MaLR 1 428 0 194 232 18 0 chrX 4956623 4956679 -157643251 - L2 LINE L2 -1730 1584 1528 526 138 0 0 chrX 4956776 4956856 -157643074 - MADE1 DNA Mariner 0 80 1 360 273 114 11 chrX 4957127 4957303 -157642627 - L1MB7 LINE L1 -302 5819 5626 192 370 50 0 chrX 4958402 4958502 -157641428 + L2 LINE L2 3206 3310 -3 1955 105 42 27 chrX 4959194 4959527 -157640403 + THE1B LTR MaLR 1 338 -26 323 0 0 0 chrX 4959553 4959590 -157640340 + THE1B LTR MaLR 319 355 0 4990 107 8 16 chrX 4960280 4960539 -157639391 - L1PA13 LINE L1 -4 6159 5899 2410 60 13 10 chrX 4960539 4960840 -157639090 + AluY SINE Alu 1 302 -9 4990 107 8 16 chrX 4960840 4961375 -157638555 - L1PA13 LINE L1 -264 5899 5372 377 293 148 33 chrX 4961383 4961653 -157638277 + HAL1b LINE L1 172 472 -876 400 252 62 78 chrX 4961704 4962077 -157637853 + HAL1b LINE L1 581 947 -401 5387 133 4 13 chrX 4962303 4963212 -157636718 - L1PA13 LINE L1 0 6163 5263 1984 212 19 33 chrX 4963671 4964156 -157635774 - LTR31 LTR ERV1 -15 604 127 3781 133 22 3 chrX 4965357 4965995 -157633935 + MER39B LTR ERV1 4 653 0 361 335 64 62 chrX 4966180 4966386 -157633544 - L2 LINE L2 -9 3304 3100 2332 107 0 0 chrX 4966386 4966695 -157633235 + AluSc SINE Alu 1 309 0 361 335 64 62 chrX 4966695 4967071 -157632859 - L2 LINE L2 -213 3100 2716 2014 150 0 0 chrX 4967363 4967657 -157632273 + AluJb SINE Alu 1 294 -18 366 121 0 0 chrX 4967701 4967767 -157632163 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 188 108 0 27 chrX 4967789 4967826 -157632104 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 1883 199 13 5 chrX 4968567 4968959 -157630971 - L1PA16 LINE L1 -9 6157 5763 848 188 28 17 chrX 4968959 4969135 -157630795 - L1PA16 LINE L1 -310 5856 5679 2300 106 8 65 chrX 4969263 4969649 -157630281 + THE1B LTR MaLR 1 364 0 24 67 0 0 chrX 4972405 4972450 -157627480 + AT_rich Low_complexity Low_complexity 1 45 0 759 247 6 0 chrX 4972586 4972768 -157627162 - MER58A DNA MER1_type -1 223 41 242 211 19 0 chrX 4973392 4973444 -157626486 + AluJ/FLAM SINE Alu 17 69 -233 2730 148 140 27 chrX 4973541 4974169 -157625761 - LTR34 LTR ERV1 0 699 1 1217 318 92 46 chrX 4974174 4974322 -157625608 - L2 LINE L2 -5 3308 3168 2576 98 19 3 chrX 4974322 4974691 -157625239 - THE1C LTR MaLR 0 375 1 1217 318 92 46 chrX 4974691 4975458 -157624472 - L2 LINE L2 -145 3168 2358 1993 99 60 7 chrX 4975753 4976036 -157623894 - AluSq SINE Alu -15 298 1 2183 133 28 17 chrX 4976782 4977142 -157622788 + THE1B LTR MaLR 1 364 0 1719 187 18 22 chrX 4977179 4977566 -157622364 + L1PB4 LINE L1 5767 6276 -23 761 277 81 14 chrX 4977820 4978116 -157621814 + MLT1F1 LTR MaLR 252 567 0 2003 133 10 7 chrX 4978212 4978512 -157621418 + AluSx SINE Alu 10 310 -2 381 294 98 33 chrX 4978535 4978719 -157621211 + MIR SINE MIR 49 244 -18 640 149 9 0 chrX 4978900 4979014 -157620916 + L1MB8 LINE L1 6063 6177 -1 1902 154 7 0 chrX 4979093 4979386 -157620544 - AluJb SINE Alu -17 295 1 539 218 22 24 chrX 4979754 4979918 -157620012 - MLT1E LTR MaLR -374 177 12 518 198 16 16 chrX 4980544 4980665 -157619265 + MLT1E LTR MaLR 471 591 -2 541 259 30 51 chrX 4983346 4983543 -157616387 + MIR SINE MIR 70 262 0 270 0 0 0 chrX 4983774 4983804 -157616126 + (TG)n Simple_repeat Simple_repeat 2 31 0 1500 141 7 46 chrX 4984010 4984294 -157615636 + LTR8 LTR ERV1 1 273 -418 1376 147 23 34 chrX 4984315 4984581 -157615349 + LTR8 LTR ERV1 429 691 0 2004 140 0 23 chrX 4985310 4985617 -157614313 + AluSx SINE Alu 1 300 -12 24 0 0 0 chrX 4986351 4986375 -157613555 + AT_rich Low_complexity Low_complexity 1 24 0 332 163 0 25 chrX 4986377 4986457 -157613473 - L1MA4 LINE L1 -1 6299 6222 212 233 0 0 chrX 4986969 4987012 -157612918 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 2143 137 0 0 chrX 4987152 4987465 -157612465 + AluSq SINE Alu 1 313 0 613 90 0 20 chrX 4987465 4987565 -157612365 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 399 246 45 102 chrX 4987589 4987833 -157612097 - L1ME2 LINE L1 -30 6134 5905 381 158 105 0 chrX 4987825 4987901 -157612029 - L1M3 LINE L1 -548 5786 5703 * 331 222 11 22 chrX 4987902 4987992 -157611938 - L1ME2 LINE L1 -420 5744 5656 267 286 112 0 chrX 4987994 4988190 -157611740 - L1ME LINE L1 -3798 2742 2525 618 100 45 0 chrX 4988240 4988350 -157611580 - L1PA13 LINE L1 0 6163 6049 710 260 58 56 chrX 4988652 4989517 -157610413 - L1ME LINE L1 -4585 1955 1047 411 21 0 0 chrX 4989547 4989595 -157610335 + (TG)n Simple_repeat Simple_repeat 1 48 0 1399 110 5 0 chrX 4989615 4989824 -157610106 + MER41D LTR ERV1 1 210 -347 7719 23 0 0 chrX 4989878 4991149 -157608781 + L1PA3 LINE L1 4882 6152 -3 403 123 0 41 chrX 4991161 4991234 -157608696 + MER41D LTR ERV1 488 557 0 379 298 44 25 chrX 4991465 4991623 -157608307 + LTR16A1 LTR ERVL 7 167 -290 1016 257 85 26 chrX 4991778 4992237 -157607693 - L1M4 LINE L1 -1988 4158 3673 803 267 58 16 chrX 4992249 4992612 -157607318 - L1MEc LINE L1 -4418 1978 1601 216 0 0 0 chrX 4992641 4992665 -157607265 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2048 104 11 21 chrX 4992665 4992952 -157606978 - AluY SINE Alu -27 284 1 572 280 88 15 chrX 4993042 4993299 -157606631 - L1MEc LINE L1 -4854 1361 1063 453 19 0 0 chrX 4993299 4993353 -157606577 + (TG)n Simple_repeat Simple_repeat 2 55 0 572 280 88 15 chrX 4993353 4993492 -157606438 - L1MEc LINE L1 -5152 1063 936 1542 114 13 9 chrX 4993515 4993743 -157606187 - AluSg/x SINE Alu -7 305 77 763 264 10 40 chrX 4993771 4994074 -157605856 - L1MEc LINE L1 -5589 807 514 1312 117 0 0 chrX 4994175 4994346 -157605584 - AluSq SINE Alu -122 191 21 227 159 48 0 chrX 4994518 4994581 -157605349 - L1MC4 LINE L1 -1337 6705 6640 1325 197 4 8 chrX 4994805 4995059 -157604871 - AluJo SINE Alu -14 298 46 237 292 42 0 chrX 4995061 4995133 -157604797 - MER5A DNA MER1_type -114 75 1 998 242 17 4 chrX 4995765 4996005 -157603925 - MLT1D LTR MaLR -2 503 261 246 265 0 15 chrX 4996018 4996086 -157603844 + T-rich Low_complexity Low_complexity 3 69 0 206 348 54 0 chrX 4996358 4996450 -157603480 - MIR3 SINE MIR 0 208 112 2188 121 36 33 chrX 4996766 4997129 -157602801 + THE1B LTR MaLR 1 364 0 1976 209 27 8 chrX 4997644 4998130 -157601800 - L1MC2 LINE L1 -95 7658 6119 309 296 46 20 chrX 4998420 4998572 -157601358 - L1ME LINE L1 -355 5766 5611 809 136 21 0 chrX 4998580 4998720 -157601210 + L1ME LINE L1 5469 5611 -555 614 133 10 0 chrX 4998741 4998839 -157601091 - MLT2C2 LTR ERVL -205 259 161 1775 175 37 10 chrX 4998841 4999197 -157600733 + MLT1A1 LTR MaLR 1 365 0 546 228 6 6 chrX 4999197 4999355 -157600575 - MLT2C2 LTR ERVL -301 163 6 2780 129 11 23 chrX 4999813 5000286 -157599644 - L1PA16 LINE L1 -3 6163 5697 1566 169 83 4 chrX 5000370 5000821 -157599109 + AluJb SINE Alu 1 472 0 1648 159 61 3 chrX 5001507 5001838 -157598092 + AluJb SINE Alu 1 348 0 21 0 0 0 chrX 5002759 5002780 -157597150 + AT_rich Low_complexity Low_complexity 1 21 0 1388 272 91 28 chrX 5003128 5003778 -157596152 + L1MB8 LINE L1 4023 4713 -1433 * 1579 204 29 34 chrX 5003769 5004186 -157595744 + L1MB8 LINE L1 5727 6141 -37 3163 149 31 9 chrX 5004490 5005032 -157594898 - MER41C LTR ERV1 0 554 1 195 277 0 0 chrX 5005493 5005558 -157594372 + (TA)n Simple_repeat Simple_repeat 2 66 0 299 289 45 53 chrX 5005794 5006040 -157593890 - L1M4 LINE L1 -1499 4647 4404 2071 92 13 46 chrX 5006405 5006711 -157593219 + AluSq SINE Alu 3 298 -15 2578 129 4 62 chrX 5006744 5007226 -157592704 + LTR8 LTR ERV1 1 454 -237 2883 136 25 34 chrX 5007226 5007756 -157592174 + MER61E LTR ERV1 1 525 -44 1212 138 24 55 chrX 5007759 5008013 -157591917 + LTR8 LTR ERV1 446 691 0 303 222 0 0 chrX 5008298 5008361 -157591569 - L1MC3 LINE L1 -517 7268 7206 1036 132 22 7 chrX 5008371 5008686 -157591244 - MLT2A2 LTR ERVL -4 449 197 2924 62 2 107 chrX 5008686 5008766 -157591164 - MLT2A1 LTR ERVL 0 444 357 2367 87 3 0 chrX 5008766 5009066 -157590864 + AluSp SINE Alu 1 301 -12 2924 62 2 107 chrX 5009066 5009130 -157590800 - MLT2A1 LTR ERVL -87 357 288 2568 85 8 3 chrX 5009130 5009483 -157590447 - THE1A LTR MaLR 0 355 1 2924 62 2 107 chrX 5009483 5009833 -157590097 - MLT2A1 LTR ERVL -156 288 1 1477 71 5 0 chrX 5009835 5010033 -157589897 - MLT2A2 LTR ERVL -254 199 1 329 249 10 48 chrX 5010057 5010163 -157589767 - L1MC4 LINE L1 -768 7099 6927 2097 76 3 8 chrX 5010165 5010526 -157589404 - LTR7 LTR ERV1 -2 448 1 1010 270 108 14 chrX 5010528 5010844 -157589086 - L1MC4 LINE L1 -1028 7014 6632 3262 146 47 17 chrX 5010844 5011446 -157588484 - LTR29 LTR ERV1 -2 620 1 1010 270 108 14 chrX 5011446 5011629 -157588301 - L1MC4 LINE L1 -1410 6632 6468 1915 140 0 11 chrX 5011728 5012006 -157587924 - AluSx SINE Alu -36 276 2 3852 147 11 0 chrX 5012175 5012803 -157587127 + MER41B LTR ERV1 1 635 0 811 310 37 13 chrX 5013317 5013691 -157586239 - L1ME LINE L1 -5651 419 37 661 209 5 32 chrX 5014149 5014306 -157585624 + L1MB8 LINE L1 5750 5903 -275 9066 39 2 2 chrX 5014306 5015377 -157584553 - MER11C LTR ERVK 0 1071 1 661 209 5 32 chrX 5015377 5015406 -157584524 + L1MB8 LINE L1 5903 5931 -247 262 259 0 12 chrX 5015444 5015525 -157584405 + LTR16B LTR ERVL 375 454 -10 4397 138 26 21 chrX 5015794 5016598 -157583332 + L1MA4 LINE L1 5492 6299 -1 25 0 0 0 chrX 5019098 5019123 -157580807 + AT_rich Low_complexity Low_complexity 1 25 0 2167 144 61 16 chrX 5019174 5019603 -157580327 - L1MA9 LINE L1 -43 6269 5822 943 181 2 5 chrX 5019899 5020448 -157579482 + (CAT)n Simple_repeat Simple_repeat 1 547 0 664 189 0 38 chrX 5020444 5020629 -157579301 + (CACCAT)n Simple_repeat Simple_repeat 3 180 0 * 756 191 0 0 chrX 5020597 5020775 -157579155 + (CAT)n Simple_repeat Simple_repeat 2 179 0 231 365 21 21 chrX 5021061 5021206 -157578724 - L2 LINE L2 0 3313 3169 440 205 0 41 chrX 5022351 5022492 -157577438 + MER5B DNA MER1_type 2 177 -1 255 318 24 12 chrX 5022564 5022649 -157577281 - MER5A DNA MER1_type -86 103 18 1483 204 32 24 chrX 5023010 5023387 -157576543 - MLT1D LTR MaLR -8 497 118 340 132 26 66 chrX 5023666 5023742 -157576188 - MLT1D LTR MaLR -420 85 13 * 3101 147 29 11 chrX 5023739 5024297 -157575633 - LTR24B LTR ERV1 -5 571 4 1401 168 40 0 chrX 5024511 5024785 -157575145 - MER7A DNA MER2_type -1 345 63 619 208 15 0 chrX 5024822 5024952 -157574978 - MER7A DNA MER2_type -216 130 1 34 42 0 0 chrX 5025206 5025254 -157574676 + AT_rich Low_complexity Low_complexity 1 48 0 1968 159 7 7 chrX 5025339 5025647 -157574283 + AluJo SINE Alu 1 308 -4 358 306 88 26 chrX 5025948 5026141 -157573789 + MIR SINE MIR 15 219 -43 361 130 30 20 chrX 5027088 5027188 -157572742 + (TA)n Simple_repeat Simple_repeat 1 101 0 271 263 38 12 chrX 5029459 5029539 -157570391 + MIR SINE MIR 88 169 -93 261 0 0 0 chrX 5029625 5029654 -157570276 + (TG)n Simple_repeat Simple_repeat 2 30 0 1595 213 71 69 chrX 5029732 5030367 -157569563 + MER92B LTR ERV1 1 636 0 3126 99 4 25 chrX 5030902 5031377 -157568553 - MER4C LTR ERV1 0 465 1 915 263 121 36 chrX 5031396 5031730 -157568200 - MLT2F LTR ERVL -173 490 107 4301 153 39 20 chrX 5031730 5032495 -157567435 - LTR39 LTR ERV1 0 783 4 915 263 121 36 chrX 5032495 5032608 -157567322 - MLT2F LTR ERVL -556 107 5 883 218 50 50 chrX 5033080 5033273 -157566657 - MER58B DNA MER1_type -2080 340 145 3863 145 35 22 chrX 5033273 5033990 -157565940 - L1MC1 LINE L1 -2 6331 5606 883 218 50 50 chrX 5033990 5034058 -157565872 - MER58B DNA MER1_type -2274 146 79 2470 62 0 0 chrX 5034156 5034448 -157565482 - AluY SINE Alu -19 292 1 1184 249 31 62 chrX 5036161 5036343 -157563587 + MLT1C LTR MaLR 1 187 -280 1932 134 0 23 chrX 5036343 5036509 -157563421 - AluSx SINE Alu -12 300 132 2369 87 0 3 chrX 5036509 5036807 -157563123 - AluSx SINE Alu -11 301 5 450 94 0 0 chrX 5036815 5036879 -157563051 + (TA)n Simple_repeat Simple_repeat 2 65 0 1932 134 0 23 chrX 5036879 5037010 -157562920 - AluSx SINE Alu -187 125 1 1184 249 31 62 chrX 5037010 5037309 -157562621 + MLT1C LTR MaLR 187 467 0 1945 163 40 36 chrX 5037457 5038006 -157561924 + MLT2A2 LTR ERVL 1 554 0 396 288 30 0 chrX 5038040 5038172 -157561758 + L2 LINE L2 2161 2296 -1018 406 287 109 17 chrX 5038186 5038360 -157561570 - MIR SINE MIR -14 248 59 35 0 0 0 chrX 5038421 5038456 -157561474 + AT_rich Low_complexity Low_complexity 1 35 0 1450 184 26 45 chrX 5038514 5038824 -157561106 - AluJo SINE Alu -8 304 1 184 328 0 30 chrX 5038878 5038945 -157560985 + MIR SINE MIR 125 189 -73 1033 186 134 0 chrX 5039359 5039553 -157560377 + AluJo SINE Alu 1 220 -92 1091 218 153 0 chrX 5039589 5039850 -157560080 + AluJo SINE Alu 11 311 -1 225 29 0 59 chrX 5040181 5040215 -157559715 + L1P4 LINE L1 5693 5724 -439 2751 194 91 56 chrX 5041068 5041884 -157558046 + MER21B LTR ERV1 1 844 -19 870 238 5 0 chrX 5041909 5042098 -157557832 + MER58A DNA MER1_type 35 224 0 600 271 35 15 chrX 5043691 5043894 -157556036 + MER3 DNA MER1_type 3 209 0 333 0 0 0 chrX 5043987 5044024 -157555906 + (T)n Simple_repeat Simple_repeat 1 37 0 2184 119 20 0 chrX 5044074 5044369 -157555561 + AluSx SINE Alu 3 303 -9 1758 257 15 39 chrX 5044579 5044663 -157555267 + MLT1E2 LTR MaLR 1 85 -541 1875 152 35 70 chrX 5044663 5045065 -157554865 + MLT1B LTR MaLR 3 390 0 1758 257 15 39 chrX 5045065 5045521 -157554409 + MLT1E2 LTR MaLR 85 528 -98 835 176 0 121 chrX 5045575 5045774 -157554156 - AluJo SINE Alu -52 260 86 350 258 0 0 chrX 5045774 5045871 -157554059 + MLT1E2 LTR MaLR 530 626 0 213 276 17 0 chrX 5046632 5046690 -157553240 - L2 LINE L2 -5 3308 3250 619 234 108 73 chrX 5046962 5047279 -157552651 - MER4C LTR ERV1 0 694 276 547 194 48 75 chrX 5047278 5047547 -157552383 - LTR59 LTR ERV1 -220 377 136 * 421 144 39 19 chrX 5047633 5047737 -157552193 - MER4C LTR ERV1 -359 106 1 963 254 103 67 chrX 5048127 5048634 -157551296 + MLT1E2 LTR MaLR 80 604 -22 574 182 0 0 chrX 5049071 5049181 -157550749 + L1MB1 LINE L1 6019 6128 -40 719 203 23 60 chrX 5049214 5049431 -157550499 + AluJo SINE Alu 3 211 -101 252 191 0 15 chrX 5049733 5049815 -157550115 + (TTG)n Simple_repeat Simple_repeat 1 80 0 577 121 0 0 chrX 5050149 5050232 -157549698 - AluJo SINE Alu -229 83 1 1758 161 28 24 chrX 5050686 5050977 -157548953 - AluJo SINE Alu -20 292 1 1055 255 143 37 chrX 5050979 5051488 -157548442 - MLT1E LTR MaLR -12 581 19 467 110 0 0 chrX 5051612 5051685 -157548245 + L1PA16 LINE L1 6091 6163 -3 215 271 0 0 chrX 5052032 5052080 -157547850 + (TA)n Simple_repeat Simple_repeat 2 49 0 1525 217 15 35 chrX 5052834 5053290 -157546640 - L1MB8 LINE L1 -5 6173 5727 3027 23 0 0 chrX 5053796 5054147 -157545783 + L1PA4 LINE L1 5802 6152 -3 1183 139 8 48 chrX 5054638 5054890 -157545040 + L1MA5A LINE L1 6054 6295 -2 207 350 14 70 chrX 5055087 5055230 -157544700 - MIR3 SINE MIR -72 136 2 391 197 24 39 chrX 5055523 5055650 -157544280 - L1MC4 LINE L1 0 8042 7918 290 200 47 0 chrX 5055679 5055764 -157544166 + (TA)n Simple_repeat Simple_repeat 1 89 0 661 218 111 70 chrX 5055773 5056204 -157543726 - L1MC4 LINE L1 -147 7895 7447 615 256 0 0 chrX 5056286 5056462 -157543468 + (TA)n Simple_repeat Simple_repeat 2 177 0 439 324 0 7 chrX 5056472 5056617 -157543313 + (TATATG)n Simple_repeat Simple_repeat 4 147 0 1942 147 0 3 chrX 5059641 5059967 -157539963 + AluSx SINE Alu 1 325 0 1929 177 3 0 chrX 5060046 5060357 -157539573 - AluJo SINE Alu 0 312 1 2269 119 0 3 chrX 5060573 5060885 -157539045 + AluSx SINE Alu 1 311 -1 360 0 0 0 chrX 5061031 5061071 -157538859 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 837 213 15 15 chrX 5061182 5061379 -157538551 + MER58A DNA MER1_type 27 223 -1 260 290 0 14 chrX 5062586 5062655 -157537275 + L2 LINE L2 3242 3309 -4 287 299 114 30 chrX 5063327 5063494 -157536436 + MIR SINE MIR 52 232 -30 1686 191 10 0 chrX 5063943 5064231 -157535699 - AluJb SINE Alu -21 291 1 1456 183 173 90 chrX 5065144 5065922 -157534008 + LTR1B LTR ERV1 1 1020 0 1596 200 13 27 chrX 5066698 5066998 -157532932 - AluJo SINE Alu -16 296 1 195 307 68 34 chrX 5067794 5067882 -157532048 + MIR SINE MIR 55 145 -63 335 236 28 0 chrX 5068048 5068120 -157531810 - MER58A DNA MER1_type -31 76 3 21 0 0 0 chrX 5068263 5068284 -157531646 + AT_rich Low_complexity Low_complexity 1 21 0 350 205 3 0 chrX 5068672 5068747 -157531183 + L1PB4 LINE L1 5735 5811 -355 798 73 0 0 chrX 5069477 5069587 -157530343 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 1653 197 15 6 chrX 5069591 5069931 -157529999 + L1PB4 LINE L1 5808 6150 -6 441 259 0 17 chrX 5069932 5070048 -157529882 + MIR SINE MIR 149 262 0 229 163 82 0 chrX 5070063 5070112 -157529818 + LTR16A1 LTR ERVL 405 457 0 2143 118 0 14 chrX 5070667 5070963 -157528967 - AluSx SINE Alu -20 292 1 1868 135 56 31 chrX 5071256 5071611 -157528319 - THE1B LTR MaLR 0 364 1 637 249 15 34 chrX 5071877 5072082 -157527848 + MER20 DNA MER1_type 16 216 -3 201 39 0 0 chrX 5073364 5073390 -157526540 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chrX 5074268 5074294 -157525636 + AT_rich Low_complexity Low_complexity 1 26 0 4492 137 31 23 chrX 5074421 5075283 -157524647 - L1PB4 LINE L1 -12 6144 5276 510 303 0 13 chrX 5075384 5075536 -157524394 - MER63 DNA MER1_type -277 785 10 505 313 7 0 chrX 5076462 5076606 -157523324 + MER63A DNA MER1_type 57 201 -9 1578 222 128 18 chrX 5076700 5076824 -157523106 - MLT1D LTR MaLR 0 505 396 3662 129 22 19 chrX 5076824 5077083 -157522847 - L1PA16 LINE L1 0 6166 5909 2137 114 19 53 chrX 5077083 5077460 -157522470 - THE1B LTR MaLR 0 364 1 3662 129 22 19 chrX 5077460 5077830 -157522100 - L1PA16 LINE L1 -257 5909 5535 1578 222 128 18 chrX 5077830 5078160 -157521770 - MLT1D LTR MaLR -109 396 1 554 152 0 0 chrX 5078346 5078438 -157521492 - AluY SINE Alu -6 305 214 342 292 0 0 chrX 5078627 5078716 -157521214 - L1MC4 LINE L1 -1339 6703 6615 534 213 0 55 chrX 5079367 5079494 -157520436 - FLAM_A SINE Alu -9 133 14 711 180 0 0 chrX 5079600 5079722 -157520208 - FLAM_C SINE Alu -21 122 1 978 206 42 35 chrX 5079758 5079879 -157520051 - MER33 DNA MER1_type -2269 316 197 2502 148 21 23 chrX 5079879 5080312 -157519618 + Tigger2a DNA MER2_type 2 433 -1 978 206 42 35 chrX 5080312 5080500 -157519430 - MER33 DNA MER1_type -2388 197 5 257 73 0 24 chrX 5080636 5080677 -157519253 + (TTA)n Simple_repeat Simple_repeat 2 41 0 181 191 0 48 chrX 5081281 5081344 -157518586 + CT-rich Low_complexity Low_complexity 2 61 0 2068 155 0 0 chrX 5081450 5081759 -157518171 - AluJo SINE Alu -3 309 1 225 278 81 40 chrX 5082105 5082303 -157517627 + L1M4 LINE L1 4741 4946 -1200 1126 231 4 16 chrX 5082317 5082568 -157517362 + AluJo SINE Alu 41 288 -24 1683 112 28 17 chrX 5083104 5083391 -157516539 + THE1C LTR MaLR 86 375 0 385 242 91 0 chrX 5083404 5083503 -157516427 - MER3 DNA MER1_type -101 108 1 372 222 94 26 chrX 5083506 5083623 -157516307 - L2 LINE L2 0 3313 3189 386 176 0 0 chrX 5083794 5083868 -157516062 + MADE1 DNA Mariner 7 80 0 198 263 147 21 chrX 5083904 5084000 -157515930 - MIR SINE MIR -37 171 63 24 32 0 0 chrX 5084787 5084818 -157515112 + AT_rich Low_complexity Low_complexity 1 31 0 2217 59 42 3 chrX 5085391 5085680 -157514250 - AluY SINE Alu -11 300 1 1759 234 59 25 chrX 5086759 5087247 -157512683 - MLT1D LTR MaLR 0 505 1 282 301 29 10 chrX 5087629 5087732 -157512198 - MIR3 SINE MIR -17 191 87 2170 119 23 52 chrX 5088429 5088815 -157511115 + THE1C LTR MaLR 1 375 0 397 320 85 7 chrX 5088887 5089040 -157510890 - MIR SINE MIR -50 212 48 362 214 15 20 chrX 5089866 5090063 -157509867 + GA-rich Low_complexity Low_complexity 1 195 0 653 183 0 9 chrX 5090083 5090344 -157509586 + FLAM_C SINE Alu 1 260 0 189 0 0 0 chrX 5090462 5090483 -157509447 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2227 81 3 0 chrX 5090491 5090774 -157509156 - AluY SINE Alu -27 284 1 199 359 0 0 chrX 5090979 5091043 -157508887 + L2 LINE L2 3209 3272 0 3261 82 22 2 chrX 5091866 5092318 -157507612 - L1PA10 LINE L1 -13 6155 5695 1817 88 0 0 chrX 5092431 5092659 -157507271 - AluSc SINE Alu -9 300 73 387 217 66 0 chrX 5092759 5092865 -157507065 + L1MB8 LINE L1 6060 6172 -6 231 180 0 0 chrX 5092868 5092878 -157507052 + (TA)n Simple_repeat Simple_repeat 1 10 -40 3001 58 3 0 chrX 5092878 5093259 -157506671 - L1PA7 LINE L1 -7 6147 5766 231 180 0 0 chrX 5093259 5093298 -157506632 + (TA)n Simple_repeat Simple_repeat 9 50 0 402 327 105 34 chrX 5093565 5093947 -157505983 - L1ME LINE L1 -446 5675 5267 27 29 0 0 chrX 5094521 5094555 -157505375 + AT_rich Low_complexity Low_complexity 1 34 0 250 83 0 0 chrX 5094971 5095007 -157504923 - MADE1 DNA Mariner 0 80 45 325 292 42 31 chrX 5095138 5095330 -157504600 + L1ME LINE L1 5064 5257 -889 349 336 16 8 chrX 5095337 5095581 -157504349 + L1ME LINE L1 5263 5508 -656 703 239 24 24 chrX 5095588 5095797 -157504133 + MER3 DNA MER1_type 1 209 0 531 194 78 0 chrX 5095914 5096017 -157503913 + FRAM SINE Alu 45 155 -21 1209 196 158 117 chrX 5096872 5097685 -157502245 + LTR1B LTR ERV1 1 1020 0 249 98 0 0 chrX 5097702 5097743 -157502187 + (TG)n Simple_repeat Simple_repeat 1 41 0 922 98 50 7 chrX 5098012 5098278 -157501652 + CT-rich Low_complexity Low_complexity 1 277 0 1025 139 63 0 chrX 5098418 5098576 -157501354 - AluJb SINE Alu -4 308 141 499 175 19 62 chrX 5098693 5098853 -157501077 + L1P LINE L1 3840 3992 -2154 607 288 58 10 chrX 5099034 5099239 -157500691 - MER58A DNA MER1_type -9 215 1 328 267 65 65 chrX 5099252 5099499 -157500431 + L1M4 LINE L1 2789 3035 -3111 1320 223 3 3 chrX 5099546 5099833 -157500097 + AluY SINE Alu 1 287 -24 1339 182 171 62 chrX 5200113 5200568 -157399362 + MLT1D LTR MaLR 1 505 0 1515 220 73 45 chrX 5201140 5201603 -157398327 + MER39 LTR ERV1 232 707 0 240 303 41 78 chrX 5201754 5201998 -157397932 + L2 LINE L2 2268 2502 -812 1641 180 14 17 chrX 5202023 5202312 -157397618 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 5202315 5202340 -157397590 + AT_rich Low_complexity Low_complexity 1 25 0 274 404 18 18 chrX 5202570 5202795 -157397135 + L2 LINE L2 2560 2784 -530 871 144 0 0 chrX 5202834 5202952 -157396978 + FLAM_C SINE Alu 1 118 -25 2034 133 10 0 chrX 5203135 5203435 -157396495 + AluSx SINE Alu 1 303 -9 2135 161 31 3 chrX 5203664 5204019 -157395911 + MER47A DNA MER2_type 1 365 -1 1700 171 22 0 chrX 5204286 5204561 -157395369 - AluJb SINE Alu -31 281 1 238 205 24 0 chrX 5204682 5204765 -157395165 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 519 128 35 37 chrX 5204864 5205134 -157394796 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 246 194 83 0 chrX 5205294 5205366 -157394564 + L1MC4 LINE L1 6618 6695 -1347 180 0 0 0 chrX 5205366 5205386 -157394544 + (TG)n Simple_repeat Simple_repeat 2 21 0 264 230 45 126 chrX 5205459 5205681 -157394249 - L1ME4a LINE L1 -157 5964 5761 1626 201 3 7 chrX 5207009 5207303 -157392627 - AluJo SINE Alu -19 293 1 846 178 0 0 chrX 5207303 5207438 -157392492 - AluJo SINE Alu -177 135 1 668 256 22 44 chrX 5207897 5208157 -157391773 + MLT1E LTR MaLR 13 233 -391 1903 122 32 10 chrX 5208166 5208536 -157391394 - L1PB4 LINE L1 -598 5558 5184 * 3682 123 6 10 chrX 5208535 5209128 -157390802 + L1PB4 LINE L1 5565 6154 -2 726 269 31 59 chrX 5209160 5209446 -157390484 + MLT1E LTR MaLR 206 483 -110 1894 130 93 17 chrX 5209451 5209804 -157390126 - MLT1B LTR MaLR -7 383 4 594 177 9 18 chrX 5209808 5209921 -157390009 + MLT1E LTR MaLR 479 590 -3 1374 157 8 0 chrX 5210236 5210478 -157389452 + L1M2 LINE L1 5550 5793 -519 322 279 47 0 chrX 5210513 5210599 -157389331 + L1MC4 LINE L1 6614 6703 -1339 611 163 42 226 chrX 5210710 5210840 -157389090 - MLT1A1 LTR MaLR -63 311 159 518 100 0 25 chrX 5210840 5210920 -157389010 - MADE1 DNA Mariner 0 80 3 611 163 42 226 chrX 5210920 5211170 -157388760 - MLT1A1 LTR MaLR -215 159 1 3279 143 98 22 chrX 5211805 5212224 -157387706 - Tigger3(Golem) DNA MER2_type 0 3029 2535 2057 120 40 7 chrX 5212224 5212525 -157387405 - AluSx SINE Alu -1 311 1 3279 143 98 22 chrX 5212525 5212799 -157387131 - Tigger3(Golem) DNA MER2_type -494 2535 2283 579 164 10 0 chrX 5212792 5212896 -157387034 - Tigger3(Golem) DNA MER2_type -2924 105 1 * 1508 243 40 50 chrX 5212933 5213452 -157386478 - LTR40a LTR ERVL 0 519 6 252 149 0 0 chrX 5214357 5214404 -157385526 + (GA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chrX 5214707 5214735 -157385195 + AT_rich Low_complexity Low_complexity 1 28 0 2144 235 5 43 chrX 5214954 5215512 -157384418 + MLT1F LTR MaLR 6 542 0 2233 146 22 3 chrX 5215731 5216088 -157383842 - THE1B LTR MaLR 0 364 1 276 198 85 38 chrX 5216314 5216420 -157383510 + L1ME LINE L1 5713 5823 -298 1762 176 7 3 chrX 5216461 5216751 -157383179 - AluJo SINE Alu -21 291 1 1760 75 9 0 chrX 5217297 5217525 -157382405 + AluSp SINE Alu 76 305 -8 274 327 9 19 chrX 5219815 5219922 -157380008 - MIR SINE MIR -57 205 100 209 229 0 0 chrX 5219991 5220039 -157379891 + MIR SINE MIR 106 153 -109 290 331 153 0 chrX 5220056 5220180 -157379750 - MIR SINE MIR -109 153 11 1963 126 0 20 chrX 5220268 5220558 -157379372 + AluSq SINE Alu 1 110 -203 363 23 0 0 chrX 5220558 5220602 -157379328 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 1963 126 0 20 chrX 5220602 5220803 -157379127 + AluSq SINE Alu 110 313 0 190 369 117 0 chrX 5221985 5222096 -157377834 + MIR SINE MIR 16 139 -69 1145 141 0 18 chrX 5222651 5222821 -157377109 + AluJo SINE Alu 1 167 -145 555 308 28 34 chrX 5223774 5223890 -157376040 - L1ME3A LINE L1 -33 6137 6022 2377 141 3 3 chrX 5223890 5224265 -157375665 - THE1C LTR MaLR 0 375 1 555 308 28 34 chrX 5224265 5224502 -157375428 - L1ME3A LINE L1 -148 6022 5786 1084 275 65 14 chrX 5225153 5225586 -157374344 - L1ME3A LINE L1 -8 6162 5708 244 175 70 0 chrX 5225588 5225645 -157374285 - MSTA LTR MaLR 0 428 368 23 0 0 0 chrX 5225669 5225692 -157374238 + AT_rich Low_complexity Low_complexity 1 23 0 2271 130 10 55 chrX 5225696 5226096 -157373834 - MSTA LTR MaLR -46 382 1 688 267 6 68 chrX 5226097 5226449 -157373481 - L1ME3A LINE L1 -461 5709 5380 367 98 0 0 chrX 5226450 5226501 -157373429 - MSTB LTR MaLR 0 426 376 1339 167 18 13 chrX 5226503 5226730 -157373200 - AluJo SINE Alu -84 228 1 334 301 27 48 chrX 5229255 5229401 -157370529 - MIR SINE MIR 0 262 120 2212 130 16 19 chrX 5229530 5229906 -157370024 + THE1C LTR MaLR 1 375 0 245 143 0 0 chrX 5230004 5230039 -157369891 - MER5A DNA MER1_type 0 189 155 1172 244 24 3 chrX 5230048 5230339 -157369591 - MER58B DNA MER1_type -2 339 43 2805 128 15 2 chrX 5230345 5230806 -157369124 - MER41B LTR ERV1 0 635 169 348 228 26 26 chrX 5230976 5231090 -157368840 + Charlie8 DNA MER1_type 77 190 -2227 1859 132 140 13 chrX 5231157 5231535 -157368395 - MSTA LTR MaLR 0 428 3 591 225 42 37 chrX 5231692 5231883 -157368047 + Tigger2 DNA MER2_type 1 192 -2526 696 187 22 14 chrX 5232111 5232250 -157367680 + Tigger2 DNA MER2_type 2579 2718 0 721 170 24 48 chrX 5232296 5232461 -157367469 - MLT1A1 LTR MaLR 0 365 217 4445 139 111 98 chrX 5232461 5233985 -157365945 - pTR5 LTR ERV1 -8 2430 714 444 209 122 0 chrX 5233996 5234111 -157365819 - MLT1A1 LTR MaLR -218 147 19 301 329 44 29 chrX 5234122 5234259 -157365671 - MIR SINE MIR -104 158 20 226 210 43 29 chrX 5234884 5235022 -157364908 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 284 206 0 29 chrX 5235106 5235242 -157364688 + (TA)n Simple_repeat Simple_repeat 1 132 0 1780 168 46 0 chrX 5235245 5235573 -157364357 - MER7A DNA MER2_type -5 341 1 2359 121 84 74 chrX 5235652 5236243 -157363687 - MER4B LTR ERV1 0 779 26 256 337 22 0 chrX 5236325 5236417 -157363513 - MIR SINE MIR -104 158 65 348 178 28 0 chrX 5236477 5236584 -157363346 + (TA)n Simple_repeat Simple_repeat 2 111 0 231 146 0 0 chrX 5237148 5237189 -157362741 + (T)n Simple_repeat Simple_repeat 1 41 0 1520 180 6 40 chrX 5238509 5238836 -157361094 + LTR8 LTR ERV1 1 316 -375 1163 104 0 0 chrX 5238869 5239032 -157360898 + LTR8 LTR ERV1 526 688 -3 1206 223 177 9 chrX 5239437 5240003 -157359927 + L1ME2 LINE L1 5198 5851 -313 780 234 9 22 chrX 5240029 5240255 -157359675 + L1ME2 LINE L1 5923 6145 -19 771 124 99 0 chrX 5240543 5240684 -157359246 + FLAM_C SINE Alu 1 153 0 2472 46 23 0 chrX 5241678 5241982 -157357948 - AluY SINE Alu 0 311 1 527 83 83 12 chrX 5242043 5242211 -157357719 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 493 73 85 24 chrX 5242224 5242389 -157357541 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 438 259 83 105 chrX 5242389 5242941 -157356989 + MER34 LTR ERV1 1 540 -2 587 215 0 6 chrX 5242952 5243115 -157356815 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 2021 127 34 3 chrX 5243610 5243902 -157356028 + AluJo SINE Alu 6 306 -6 218 319 21 106 chrX 5243906 5244047 -157355883 + MIR3 SINE MIR 3 131 -77 2224 117 3 0 chrX 5244541 5244839 -157355091 + AluSx SINE Alu 1 299 -13 24 0 0 0 chrX 5246137 5246161 -157353769 + AT_rich Low_complexity Low_complexity 1 24 0 1289 202 8 4 chrX 5246175 5246413 -157353517 - AluJb SINE Alu -73 239 1 359 167 97 0 chrX 5246520 5246592 -157353338 - MER5B DNA MER1_type 0 178 100 273 143 0 18 chrX 5247003 5247059 -157352871 - MLT2B3 LTR ERVL 0 554 500 201 39 0 0 chrX 5247060 5247086 -157352844 + (GA)n Simple_repeat Simple_repeat 1 26 0 336 77 0 0 chrX 5247100 5247152 -157352778 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2391 83 0 0 chrX 5247154 5247455 -157352475 + AluY SINE Alu 4 304 -7 364 128 11 69 chrX 5247509 5247697 -157352233 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 569 89 13 68 chrX 5247742 5248124 -157351806 + (TAGA)n Simple_repeat Simple_repeat 1 360 0 2265 228 23 2 chrX 5248124 5248653 -157351277 - MLT2B3 LTR ERVL -19 506 1 1681 163 8 73 chrX 5248907 5249306 -157350624 + L1MB3 LINE L1 5767 6139 -44 846 180 0 0 chrX 5249313 5249452 -157350478 + FRAM SINE Alu 13 151 -25 308 21 0 21 chrX 5249461 5249508 -157350422 + L1MB4 LINE L1 6128 6173 -7 427 226 32 106 chrX 5249762 5250145 -157349785 + MER34 LTR ERV1 216 542 0 3492 109 25 15 chrX 5250253 5250775 -157349155 - MER1A DNA MER1_type 0 527 1 354 370 68 48 chrX 5252080 5252461 -157347469 + L2 LINE L2 2681 3063 -209 2138 133 3 0 chrX 5252816 5253124 -157346806 + AluSx SINE Alu 1 309 -3 3537 143 11 24 chrX 5254024 5254686 -157345244 - MER39B LTR ERV1 0 653 1 32 26 0 0 chrX 5255095 5255134 -157344796 + AT_rich Low_complexity Low_complexity 1 39 0 1049 156 0 0 chrX 5255146 5255300 -157344630 - AluSg/x SINE Alu -32 278 125 2324 192 36 2 chrX 5255417 5255774 -157344156 + L1MA9 LINE L1 5797 6177 -135 234 0 0 0 chrX 5255774 5255800 -157344130 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2324 192 36 2 chrX 5255800 5255936 -157343994 + L1MA9 LINE L1 6177 6307 -5 278 304 35 26 chrX 5256781 5257011 -157342919 + L1ME LINE L1 4488 4719 -1427 449 326 113 53 chrX 5257022 5257274 -157342656 + L1ME LINE L1 4759 4995 -1169 2062 119 10 19 chrX 5257274 5257584 -157342346 + AluSx SINE Alu 2 308 -4 449 326 113 53 chrX 5257584 5258157 -157341773 + L1ME LINE L1 4995 5634 -530 1255 140 8 86 chrX 5258326 5258569 -157341361 + AluJo SINE Alu 86 309 -3 427 161 0 86 chrX 5258695 5258776 -157341154 + FLAM_A SINE Alu 37 110 -32 396 0 0 0 chrX 5258782 5258826 -157341104 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 189 0 0 0 chrX 5259611 5259632 -157340298 + (A)n Simple_repeat Simple_repeat 1 21 0 1728 153 0 0 chrX 5260365 5260724 -157339206 - L1PB4 LINE L1 -19 6137 5707 * 3545 206 37 50 chrX 5260714 5261692 -157338238 + L1MA5 LINE L1 5336 6300 0 21 36 0 0 chrX 5261934 5261962 -157337968 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chrX 5262489 5262522 -157337408 + AT_rich Low_complexity Low_complexity 1 33 0 1754 128 36 32 chrX 5263078 5263359 -157336571 - THE1B LTR MaLR 0 364 83 697 122 0 0 chrX 5263360 5263458 -157336472 + AluJb SINE Alu 11 108 -204 276 100 0 0 chrX 5263461 5263501 -157336429 + (CA)n Simple_repeat Simple_repeat 2 41 0 430 253 0 0 chrX 5263637 5263724 -157336206 - MIR SINE MIR -103 159 73 2170 217 35 2 chrX 5263733 5264217 -157335713 - L1MC3 LINE L1 -10 7775 7276 496 156 31 10 chrX 5264217 5264313 -157335617 + MER4A LTR ERV1 1 98 -566 1970 122 3 22 chrX 5264313 5264665 -157335265 + MER4A LTR ERV1 261 664 0 879 72 171 40 chrX 5264670 5264693 -157335237 + MER4A-int LTR ERV1 3 22 -6576 3647 92 17 31 chrX 5264693 5265213 -157334717 + LTR10D LTR ERV1 1 513 0 879 72 171 40 chrX 5265213 5265341 -157334589 + MER4A-int LTR ERV1 22 174 -6424 394 227 11 0 chrX 5265341 5265429 -157334501 - L1MC3 LINE L1 -503 7282 7194 232 233 0 33 chrX 5265433 5265493 -157334437 - MLT1F1 LTR MaLR -443 124 67 249 298 12 12 chrX 5265741 5265825 -157334105 - L2 LINE L2 -211 3061 2978 1688 179 0 11 chrX 5266167 5266482 -157333448 - AluJo SINE Alu 0 312 1 276 216 72 54 chrX 5266723 5266834 -157333096 + L1MC/D LINE L1 5648 5760 -2048 507 178 0 0 chrX 5266834 5266935 -157332995 + GA-rich Low_complexity Low_complexity 2 102 0 575 171 6 12 chrX 5267651 5267811 -157332119 + GA-rich Low_complexity Low_complexity 1 159 0 356 279 154 48 chrX 5268434 5268764 -157331166 - L2 LINE L2 -388 2926 2562 2354 114 0 0 chrX 5268880 5269187 -157330743 - AluSx SINE Alu -5 307 1 1656 157 27 13 chrX 5269294 5269594 -157330336 + L1MA7 LINE L1 5985 6288 -3 1508 147 47 36 chrX 5269600 5269879 -157330051 + AluJo SINE Alu 1 282 -30 24 32 0 0 chrX 5269879 5269910 -157330020 + AT_rich Low_complexity Low_complexity 1 31 0 1266 199 22 36 chrX 5270901 5271177 -157328753 + AluJo SINE Alu 41 312 0 893 208 99 121 chrX 5271410 5271603 -157328327 + MLT1D LTR MaLR 3 199 -306 3297 148 10 2 chrX 5271603 5272118 -157327812 + L1PA15 LINE L1 5634 6152 -13 893 208 99 121 chrX 5272118 5272438 -157327492 + MLT1D LTR MaLR 199 505 0 689 239 71 49 chrX 5272440 5272798 -157327132 - L2 LINE L2 -172 3141 2770 321 200 29 0 chrX 5272813 5272883 -157327047 - MER20 DNA MER1_type -71 148 77 386 313 79 75 chrX 5272898 5273176 -157326754 - L2 LINE L2 -586 2728 2450 588 255 6 25 chrX 5273493 5273650 -157326280 + MER5B DNA MER1_type 2 155 -23 724 230 141 5 chrX 5273694 5273885 -157326045 + MER20 DNA MER1_type 2 218 -1 972 184 22 83 chrX 5274531 5274759 -157325171 + MER20 DNA MER1_type 5 218 -1 443 250 87 0 chrX 5275173 5275277 -157324653 - MER81 DNA DNA 0 114 2 2269 103 0 3 chrX 5275986 5276286 -157323644 + AluSx SINE Alu 1 299 -13 237 180 0 0 chrX 5276547 5276597 -157323333 + (CATA)n Simple_repeat Simple_repeat 3 52 0 234 152 0 0 chrX 5276704 5276737 -157323193 - Alu SINE Alu -16 117 85 348 83 0 0 chrX 5277560 5277608 -157322322 + (GA)n Simple_repeat Simple_repeat 1 48 0 258 32 0 0 chrX 5278000 5278031 -157321899 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1945 169 16 27 chrX 5278895 5279157 -157320773 - MLT1A1 LTR MaLR -2 363 105 3750 84 2 0 chrX 5279157 5279609 -157320321 - MLT2A2 LTR ERVL 0 453 1 1945 169 16 27 chrX 5279609 5279713 -157320217 - MLT1A1 LTR MaLR -260 105 1 1645 153 16 39 chrX 5280199 5280507 -157319423 - AluJb SINE Alu -11 301 1 1426 182 87 0 chrX 5281491 5281777 -157318153 + AluJo SINE Alu 1 311 -1 468 270 16 24 chrX 5283007 5283133 -157316797 + MER94 DNA DNA 10 134 0 2623 102 25 25 chrX 5283255 5283619 -157316311 - THE1B LTR MaLR 0 364 1 625 269 8 95 chrX 5283772 5283797 -157316133 + LTR52 LTR ERVL 1 27 -394 1712 182 0 10 chrX 5283797 5284094 -157315836 - AluJo SINE Alu -18 294 1 625 269 8 95 chrX 5284094 5284310 -157315620 + LTR52 LTR ERVL 27 221 -200 1596 254 91 9 chrX 5284861 5285310 -157314620 - MLT1E LTR MaLR -12 581 96 634 223 153 0 chrX 5285491 5285693 -157314237 - MER106A DNA MER1_type 0 236 4 598 329 40 0 chrX 5285696 5285918 -157314012 + MIR SINE MIR 20 250 -12 193 209 30 0 chrX 5286340 5286407 -157313523 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 338 294 0 9 chrX 5286425 5286534 -157313396 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 560 162 0 58 chrX 5286534 5286725 -157313205 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 477 249 7 12 chrX 5286793 5287241 -157312689 + (TCCA)n Simple_repeat Simple_repeat 1 445 0 242 217 0 0 chrX 5288400 5288446 -157311484 - L3b LINE CR1 -196 1387 1342 2807 97 19 13 chrX 5288584 5288957 -157310973 + THE1C LTR MaLR 1 375 0 306 164 0 66 chrX 5289282 5289343 -157310587 - MER116 DNA Mariner -1 79 23 1188 178 5 0 chrX 5289722 5289949 -157309981 + AluJo SINE Alu 87 314 0 732 207 67 0 chrX 5289949 5290113 -157309817 - MLT1D LTR MaLR -330 175 1 1565 176 40 29 chrX 5290287 5290565 -157309365 - AluJo SINE Alu -31 281 1 1592 210 36 15 chrX 5290567 5290896 -157309034 + MLT1D LTR MaLR 169 504 -1 874 122 0 46 chrX 5290974 5291105 -157308825 + FLAM_C SINE Alu 1 125 -8 27 0 0 0 chrX 5291105 5291132 -157308798 + AT_rich Low_complexity Low_complexity 1 27 0 8087 98 6 15 chrX 5291161 5292238 -157307692 + MER11C LTR ERVK 1 1067 -4 288 242 15 15 chrX 5292568 5292634 -157307296 + MER81 DNA DNA 2 67 -47 204 291 23 47 chrX 5292769 5292855 -157307075 - L2 LINE L2 0 3272 3189 257 222 0 0 chrX 5292944 5292998 -157306932 + L1MC4 LINE L1 6650 6703 -1339 220 186 51 23 chrX 5293149 5293372 -157306558 + (TA)n Simple_repeat Simple_repeat 1 229 0 * 307 220 38 23 chrX 5293354 5293486 -157306444 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 183 286 18 0 chrX 5294369 5294425 -157305505 + MIR SINE MIR 77 133 -129 222 286 98 38 chrX 5294784 5294917 -157305013 + MIR SINE MIR 29 169 -93 319 221 0 15 chrX 5295068 5295136 -157304794 + MER5A DNA MER1_type 14 80 -109 861 143 0 15 chrX 5295143 5295276 -157304654 + FRAM SINE Alu 24 154 -22 569 139 7 131 chrX 5295276 5295413 -157304517 + MER5A DNA MER1_type 60 179 -10 22 0 0 0 chrX 5295719 5295741 -157304189 + AT_rich Low_complexity Low_complexity 1 22 0 1815 171 0 7 chrX 5295741 5296050 -157303880 - AluJb SINE Alu -5 307 1 880 248 103 31 chrX 5297113 5297649 -157302281 + MLT1E1 LTR MaLR 1 654 0 2823 102 3 3 chrX 5297828 5298192 -157301738 + THE1B LTR MaLR 1 364 0 2586 130 75 0 chrX 5298534 5298935 -157300995 - MSTB1 LTR MaLR -1 431 1 1659 211 18 46 chrX 5299324 5299760 -157300170 - LTR37A LTR ERV1 -2 424 1 1772 164 0 35 chrX 5299891 5300202 -157299728 + AluJo SINE Alu 1 300 -12 2333 208 32 75 chrX 5300255 5300920 -157299010 - MER92B LTR ERV1 0 636 1 2935 122 9 14 chrX 5301397 5301833 -157298097 + MER57B LTR ERV1 1 434 0 1128 201 20 108 chrX 5302087 5302455 -157297475 - MLT1A1 LTR MaLR -1 625 280 2222 106 0 7 chrX 5302455 5302756 -157297174 - AluSx SINE Alu -13 299 1 1128 201 20 108 chrX 5302756 5302993 -157296937 - MLT1A1 LTR MaLR -346 280 24 666 232 38 38 chrX 5303001 5303186 -157296744 - MLT1E2 LTR MaLR -194 432 248 226 287 74 74 chrX 5303185 5303415 -157296515 + MARNA DNA Mariner 341 570 -16 * 756 212 55 84 chrX 5303518 5303862 -157296068 + LTR37A LTR ERV1 27 360 -66 1061 260 157 54 chrX 5304407 5304941 -157294989 + MER69 DNA AcHobo 213 801 -1725 385 264 31 16 chrX 5304942 5305071 -157294859 + MER69 DNA AcHobo 2017 2147 -379 342 215 0 0 chrX 5305214 5305279 -157294651 + MER92C LTR ERV1 1 65 -489 3248 104 18 2 chrX 5305296 5305739 -157294191 - L1PA16 LINE L1 0 6166 5717 308 235 15 0 chrX 5306001 5306069 -157293861 + MER92C LTR ERV1 484 552 -2 1123 137 5 58 chrX 5306964 5307154 -157292776 + AluJb SINE Alu 107 286 -26 245 250 122 71 chrX 5307158 5307354 -157292576 + LTR48 LTR ERV1 575 780 -7 1253 201 79 0 chrX 5307475 5307729 -157292201 + AluJb SINE Alu 1 274 -38 333 0 0 0 chrX 5307751 5307788 -157292142 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 387 186 0 0 chrX 5307912 5307982 -157291948 - L1MB8 LINE L1 -1 6177 6108 1035 170 18 50 chrX 5307995 5308213 -157291717 - L1MB2 LINE L1 -2 6169 5959 216 0 0 0 chrX 5308214 5308238 -157291692 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1229 24 30 6 chrX 5308248 5308416 -157291514 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2154 108 0 0 chrX 5308421 5308698 -157291232 - AluSx SINE Alu -35 277 1 1331 185 39 8 chrX 5309096 5309355 -157290575 + L1MB2 LINE L1 5587 5853 -318 368 177 8 32 chrX 5309531 5309607 -157290323 + MER21B LTR ERV1 34 136 -469 448 268 51 22 chrX 5309646 5309784 -157290146 + MER21B LTR ERV1 98 239 -624 836 178 16 0 chrX 5309887 5310016 -157289914 - FLAM_C SINE Alu -11 132 2 853 266 83 66 chrX 5310179 5310407 -157289523 - L1ME2 LINE L1 -19 6145 5922 683 216 61 17 chrX 5310407 5310588 -157289342 - MER53 DNA DNA 0 189 1 853 266 83 66 chrX 5310588 5310841 -157289089 - L1ME2 LINE L1 -242 5922 5656 264 188 34 17 chrX 5310845 5311021 -157288909 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 363 117 49 31 chrX 5311032 5311194 -157288736 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 441 113 21 21 chrX 5311244 5311341 -157288589 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 271 320 160 16 chrX 5311375 5311762 -157288168 + L2 LINE L2 2451 2893 -421 2234 92 0 0 chrX 5311763 5312083 -157287847 - AluSx SINE Alu 0 320 1 1916 153 0 7 chrX 5312369 5312670 -157287260 - AluJb SINE Alu -13 299 1 2005 174 26 3 chrX 5312671 5313015 -157286915 - MER47A DNA MER2_type -6 360 9 210 261 15 0 chrX 5314055 5314120 -157285810 + GA-rich Low_complexity Low_complexity 1 66 0 223 191 0 0 chrX 5314625 5314667 -157285263 + T-rich Low_complexity Low_complexity 1 42 0 219 351 54 0 chrX 5314822 5314933 -157284997 + L2 LINE L2 3197 3313 0 1664 232 27 2 chrX 5316934 5317392 -157282538 + MLT2B1 LTR ERVL 3 515 0 3451 133 27 2 chrX 5317583 5318109 -157281821 - MER41C LTR ERV1 -2 552 14 2182 107 0 0 chrX 5318492 5318803 -157281127 - AluSx SINE Alu 0 312 2 458 184 149 0 chrX 5319201 5319288 -157280642 - MER20 DNA MER1_type 0 219 120 201 74 0 0 chrX 5319932 5319959 -157279971 + (TG)n Simple_repeat Simple_repeat 2 28 0 1981 118 76 0 chrX 5320028 5320317 -157279613 - AluSx SINE Alu -1 311 1 232 175 19 155 chrX 5320836 5320939 -157278991 + L1MC4 LINE L1 6615 6703 -1339 202 162 27 0 chrX 5320940 5320977 -157278953 + (TA)n Simple_repeat Simple_repeat 1 38 0 1854 144 10 10 chrX 5321141 5321440 -157278490 - AluJo SINE Alu -9 303 5 463 303 37 31 chrX 5324117 5324440 -157275490 + L1ME4a LINE L1 5600 5924 -197 601 184 18 110 chrX 5324440 5324539 -157275391 - MER5A DNA MER1_type -28 161 81 1850 158 10 7 chrX 5324539 5324842 -157275088 - AluSx SINE Alu -8 304 1 601 184 18 110 chrX 5324842 5324905 -157275025 - MER5A DNA MER1_type -108 81 14 2702 185 53 42 chrX 5325038 5325116 -157274814 + L1MB5 LINE L1 5541 5617 -557 1762 165 28 92 chrX 5325116 5325516 -157274414 - MLT1A2 LTR MaLR 0 374 1 2702 185 53 42 chrX 5325516 5325564 -157274366 + L1MB5 LINE L1 5617 5663 -511 324 70 0 0 chrX 5325564 5325607 -157274323 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 54 54 0 chrX 5325606 5325643 -157274287 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 * 2702 185 53 42 chrX 5325607 5326141 -157273789 + L1MB5 LINE L1 5663 6173 -1 249 308 77 29 chrX 5326141 5326245 -157273685 + MER5B DNA MER1_type 61 169 -9 312 265 0 12 chrX 5326394 5326477 -157273453 + MER5A DNA MER1_type 13 94 -95 2132 200 48 30 chrX 5326726 5326934 -157272996 - MER66B LTR ERV1 0 486 283 2024 134 7 0 chrX 5326934 5327232 -157272698 - AluSx SINE Alu -11 301 2 2132 200 48 30 chrX 5327232 5327497 -157272433 - MER66B LTR ERV1 -203 283 4 986 221 160 19 chrX 5328178 5328441 -157271489 - AluSg SINE Alu 0 300 1 1013 220 77 10 chrX 5329143 5329352 -157270578 + MER58A DNA MER1_type 2 224 0 193 29 29 29 chrX 5330578 5330613 -157269317 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 729 212 0 14 chrX 5330705 5330851 -157269079 - MER58B DNA MER1_type -1 340 197 328 266 261 5 chrX 5332523 5332730 -157267200 - MIR SINE MIR 0 262 3 1093 202 5 14 chrX 5332742 5332960 -157266970 - MER20 DNA MER1_type -3 216 1 271 246 16 0 chrX 5332960 5333021 -157266909 + MER116 DNA Mariner 4 65 -15 421 114 51 0 chrX 5334164 5334243 -157265687 - L1MD2 LINE L1 0 6359 6277 1075 227 18 0 chrX 5334253 5334473 -157265457 + L1MD1 LINE L1 5918 6141 -101 * 3456 197 67 9 chrX 5334470 5335313 -157264617 - L1M4 LINE L1 -4127 2517 1533 313 262 60 99 chrX 5335689 5335761 -157264169 - L1 LINE L1 -1672 4474 4401 1796 145 0 48 chrX 5335761 5336100 -157263830 - AluJb SINE Alu 0 312 6 313 262 60 99 chrX 5336100 5336279 -157263651 - L1 LINE L1 -1745 4401 4233 326 286 38 0 chrX 5336384 5336517 -157263413 - MER103 DNA DNA -4 162 25 1088 173 72 61 chrX 5337494 5337696 -157262234 - MER58B DNA MER1_type -2080 340 133 1956 131 14 0 chrX 5337696 5337978 -157261952 - AluSx SINE Alu -21 291 6 1088 173 72 61 chrX 5337978 5338053 -157261877 - MER58B DNA MER1_type -2287 133 60 305 284 37 9 chrX 5338100 5338209 -157261721 + L1ME4a LINE L1 5808 5919 -202 1670 164 3 16 chrX 5338881 5339185 -157260745 - AluJb SINE Alu -12 300 1 404 347 46 6 chrX 5339922 5340040 -157259890 - MIR SINE MIR -34 228 99 261 0 0 0 chrX 5340040 5340069 -157259861 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 404 347 46 6 chrX 5340069 5340123 -157259807 - MIR SINE MIR -163 99 49 1278 199 14 0 chrX 5341442 5341658 -157258272 + MER20 DNA MER1_type 1 219 0 1870 141 17 20 chrX 5342612 5342910 -157257020 - AluJb SINE Alu -15 297 1 880 184 60 0 chrX 5344487 5344655 -157255275 - L1MB7 LINE L1 0 6184 6007 1425 177 8 0 chrX 5344678 5344938 -157254992 - L1MB7 LINE L1 -352 5826 5565 292 253 110 34 chrX 5345019 5345165 -157254765 + L2 LINE L2 1882 2038 -1276 262 286 43 0 chrX 5345641 5345711 -157254219 + L2 LINE L2 3196 3268 -4 227 164 77 10 chrX 5345717 5345744 -157254186 + (TA)n Simple_repeat Simple_repeat 1 25 -86 2715 233 51 19 chrX 5345744 5346376 -157253554 + MER82 DNA MER2_type 1 652 -1 227 164 77 10 chrX 5346376 5346452 -157253478 + (TA)n Simple_repeat Simple_repeat 25 111 0 * 276 185 33 82 chrX 5346378 5346562 -157253368 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 281 241 51 6 chrX 5346437 5346595 -157253335 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2216 118 14 35 chrX 5346632 5346978 -157252952 - THE1B LTR MaLR 0 364 26 6086 124 2 5 chrX 5346978 5348056 -157251874 + L1PB1 LINE L1 5019 6094 -57 259 163 0 0 chrX 5348074 5348117 -157251813 - THE1B LTR MaLR -332 43 1 225 279 13 0 chrX 5348128 5348207 -157251723 + (TA)n Simple_repeat Simple_repeat 1 80 0 397 329 83 45 chrX 5348303 5348701 -157251229 + L2 LINE L2 2365 2777 -537 2347 89 0 10 chrX 5349885 5350232 -157249698 - AluY SINE Alu 0 344 1 237 33 0 0 chrX 5350672 5350702 -157249228 + (CA)n Simple_repeat Simple_repeat 1 30 0 5808 74 4 1 chrX 5353969 5354683 -157245247 + L1PA10 LINE L1 5450 6165 -3 1764 180 0 3 chrX 5355145 5355428 -157244502 + AluJo SINE Alu 1 282 -30 225 0 0 0 chrX 5355435 5355460 -157244470 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 254 302 78 31 chrX 5356409 5356538 -157243392 + MIR SINE MIR 78 212 -50 360 308 52 28 chrX 5356612 5356862 -157243068 - L1ME LINE L1 -297 5824 5569 353 286 43 9 chrX 5357929 5358064 -157241866 - L1MD2 LINE L1 0 6242 6106 1689 141 17 44 chrX 5358271 5358603 -157241327 - AluJo SINE Alu 0 312 1 1106 213 15 0 chrX 5358609 5358811 -157241119 - MER58A DNA MER1_type -15 209 5 1909 127 40 3 chrX 5358943 5359243 -157240687 + AluSx SINE Alu 1 311 -1 276 100 0 0 chrX 5359243 5359283 -157240647 + (GA)n Simple_repeat Simple_repeat 1 40 0 239 132 38 0 chrX 5359418 5359471 -157240459 + (CCTA)n Simple_repeat Simple_repeat 3 57 0 24 67 0 0 chrX 5559616 5559661 -157040269 + AT_rich Low_complexity Low_complexity 1 45 0 2450 35 3 7 chrX 5559721 5560006 -157039924 - AluY SINE Alu -21 290 7 315 27 0 0 chrX 5560045 5560082 -157039848 - MLT1D LTR MaLR -9 617 581 583 180 148 8 chrX 5560105 5560233 -157039697 - MLT1D LTR MaLR -118 387 242 3137 230 51 33 chrX 5560247 5561450 -157038480 - L1M4c LINE L1 -3113 3269 2005 261 0 0 0 chrX 5562432 5562461 -157037469 + (CA)n Simple_repeat Simple_repeat 2 30 0 1836 138 3 43 chrX 5562469 5562774 -157037156 - AluJo SINE Alu -19 293 1 1370 260 94 34 chrX 5563540 5564093 -157035837 - L1ME1 LINE L1 -5 6161 5576 1129 160 73 12 chrX 5564101 5564534 -157035396 - MLT1D LTR MaLR 0 505 1 585 228 60 88 chrX 5564541 5564826 -157035104 - L1ME1 LINE L1 -849 5297 5021 213 222 0 0 chrX 5565797 5565842 -157034088 + L2 LINE L2 3264 3308 -5 536 191 19 0 chrX 5566599 5566704 -157033226 - MSTA LTR MaLR 0 428 322 4512 190 34 2 chrX 5566704 5567551 -157032379 - MSTB-int LTR MaLR -777 874 1 1986 188 46 17 chrX 5567551 5567965 -157031965 - MSTB LTR MaLR 0 426 1 1207 190 46 8 chrX 5568380 5568643 -157031287 + MER89 LTR ERV1 287 559 0 709 215 26 52 chrX 5569968 5570080 -157029850 - MER5A DNA MER1_type 0 189 83 2473 124 20 59 chrX 5570080 5570294 -157029636 + MSTC LTR MaLR 4 194 -234 2070 124 3 25 chrX 5570294 5570609 -157029321 + AluSg SINE Alu 1 308 -2 2473 124 20 59 chrX 5570609 5570836 -157029094 + MSTC LTR MaLR 194 428 0 709 215 26 52 chrX 5570836 5570914 -157029016 - MER5A DNA MER1_type -106 83 4 1666 158 50 4 chrX 5571711 5571990 -157027940 + AluJb SINE Alu 1 292 -20 656 269 92 9 chrX 5572284 5572511 -157027419 - MER46C DNA MER2_type 0 338 93 207 154 185 62 chrX 5574359 5574424 -157025506 + L3b LINE CR1 1293 1365 -218 481 248 10 4 chrX 5574668 5574799 -157025131 - MLT1A2 LTR MaLR 0 374 260 232 211 0 18 chrX 5574820 5574877 -157025053 - MLT1C LTR MaLR -409 58 3 224 155 0 35 chrX 5576205 5576263 -157023667 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 415 240 87 37 chrX 5578631 5578829 -157021101 - MER106B DNA MER1_type 0 1059 30 207 0 0 0 chrX 5580308 5580331 -157019599 + (T)n Simple_repeat Simple_repeat 1 23 0 1645 163 7 17 chrX 5581072 5581366 -157018564 - AluJb SINE Alu -21 291 1 664 191 13 126 chrX 5582253 5582483 -157017447 + Charlie1 DNA MER1_type 2157 2360 -401 442 143 0 0 chrX 5582494 5582564 -157017366 - AluSg/x SINE Alu -67 243 174 2040 144 15 21 chrX 5583776 5584115 -157015815 - MER1B DNA MER1_type 0 337 1 201 241 0 0 chrX 5584282 5584336 -157015594 + (CA)n Simple_repeat Simple_repeat 1 54 0 2659 92 5 19 chrX 5585162 5585531 -157014399 + THE1B LTR MaLR 1 364 0 2672 229 75 55 chrX 5587604 5588687 -157011243 + L1M4 LINE L1 2626 3729 -2417 579 284 21 0 chrX 5588702 5588896 -157011034 + Charlie7 DNA MER1_type 1932 2129 -483 1090 115 19 0 chrX 5588928 5589084 -157010846 + AluSg/x SINE Alu 142 300 -12 531 239 139 23 chrX 5589116 5589307 -157010623 + Charlie7 DNA MER1_type 2219 2386 -226 1545 198 27 3 chrX 5589307 5589600 -157010330 - AluJo SINE Alu -12 300 1 531 239 139 23 chrX 5589600 5589760 -157010170 + Charlie7 DNA MER1_type 2386 2611 -1 195 258 65 0 chrX 5589876 5589938 -157009992 + MIR SINE MIR 108 173 -89 829 270 88 18 chrX 5591018 5591373 -157008557 + MLT1C LTR MaLR 6 467 0 1982 134 40 0 chrX 5591765 5592064 -157007866 + AluSx SINE Alu 1 311 -1 183 194 0 0 chrX 5592768 5592804 -157007126 + L2 LINE L2 3265 3300 -13 846 209 25 0 chrX 5592839 5593035 -157006895 + L1MA8 LINE L1 6091 6291 0 2223 183 85 14 chrX 5593911 5594418 -157005512 + MER67A LTR ERV1 1 543 0 1441 204 90 26 chrX 5595238 5595659 -157004271 + MLT1C LTR MaLR 20 467 0 525 178 112 9 chrX 5596391 5596498 -157003432 - AluSq/x SINE Alu -176 136 19 428 342 55 0 chrX 5597760 5597962 -157001968 + MER58B DNA MER1_type 87 299 -42 26 0 0 0 chrX 5598551 5598577 -157001353 + AT_rich Low_complexity Low_complexity 1 26 0 1855 144 0 46 chrX 5599859 5600164 -156999766 - AluJb SINE Alu -13 299 9 2423 89 3 0 chrX 5600614 5600918 -156999012 + AluSx SINE Alu 1 305 -7 854 128 8 0 chrX 5602180 5602305 -156997625 - FLAM_C SINE Alu -17 126 1 744 199 11 40 chrX 5602307 5602483 -156997447 + AluJo/FRAM SINE Alu 142 312 0 1992 265 73 33 chrX 5603117 5603308 -156996622 + MER21B LTR ERV1 1 183 -680 2311 82 0 0 chrX 5603308 5603613 -156996317 + AluSg SINE Alu 3 307 0 1992 265 73 33 chrX 5603613 5604122 -156995808 + MER21B LTR ERV1 183 730 -133 218 54 0 27 chrX 5604212 5604249 -156995681 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 242 253 53 0 chrX 5605115 5605190 -156994740 + MER20 DNA MER1_type 124 202 -17 2157 123 0 35 chrX 5606513 5606831 -156993099 + AluSx SINE Alu 1 307 -5 216 195 0 0 chrX 5610165 5610206 -156989724 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 282 55 0 chrX 5610573 5610683 -156989247 + MER103 DNA DNA 3 118 -48 201 343 23 9 chrX 5610804 5610943 -156988987 + MIR SINE MIR 46 191 -17 4240 73 18 0 chrX 5610976 5611520 -156988410 - MER41A LTR ERV1 0 554 1 216 0 0 0 chrX 5611807 5611831 -156988099 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2984 199 101 55 chrX 5611834 5613018 -156986912 + L1ME2 LINE L1 4837 6112 -52 2116 144 71 32 chrX 5613069 5613582 -156986348 + MLT2A2 LTR ERVL 1 554 0 304 347 143 23 chrX 5613932 5614364 -156985566 - L2 LINE L2 -2601 713 230 238 236 75 47 chrX 5614386 5614492 -156985438 + MLT1J LTR MaLR 403 511 0 234 105 0 0 chrX 5614779 5614817 -156985113 + (TATG)n Simple_repeat Simple_repeat 2 39 0 225 143 41 0 chrX 5614835 5614884 -156985046 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 335 257 88 20 chrX 5615675 5615823 -156984107 - HAL1b LINE L1 -531 817 660 461 289 115 26 chrX 5615850 5615964 -156983966 - HAL1b LINE L1 -755 593 491 2159 164 40 17 chrX 5615964 5616385 -156983545 + MSTB1 LTR MaLR 1 431 -1 461 289 115 26 chrX 5616385 5616661 -156983269 - HAL1b LINE L1 -857 491 168 201 208 0 21 chrX 5619046 5619094 -156980836 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1654 150 11 14 chrX 5619115 5619395 -156980535 - AluJo SINE Alu -16 296 18 2205 147 16 16 chrX 5619538 5619925 -156980005 + MLT1B LTR MaLR 1 387 -3 609 168 0 9 chrX 5622039 5622152 -156977778 - FLAM_A SINE Alu -1 141 30 642 228 26 24 chrX 5622760 5622932 -156976998 - L1M4 LINE L1 -438 5740 5571 325 287 11 0 chrX 5623098 5623185 -156976745 + L2 LINE L2 3139 3226 -46 2479 131 22 22 chrX 5623373 5623778 -156976152 + MSTB1 LTR MaLR 28 432 0 1728 151 96 14 chrX 5625191 5625535 -156974395 + THE1C LTR MaLR 4 375 0 293 275 78 68 chrX 5625934 5626243 -156973687 + L1MEc LINE L1 1416 1727 -4669 1881 175 34 28 chrX 5626304 5626692 -156973238 + MLT1B LTR MaLR 1 390 0 754 176 35 21 chrX 5629063 5629259 -156970671 - LTR37A LTR ERV1 -21 447 227 230 258 16 0 chrX 5629926 5629988 -156969942 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 225 358 16 0 chrX 5630059 5630182 -156969748 + (TA)n Simple_repeat Simple_repeat 1 125 0 2811 94 53 5 chrX 5631295 5631709 -156968221 + L1PB2 LINE L1 5716 6149 -2 2128 117 3 16 chrX 5632204 5632511 -156967419 - AluSx SINE Alu -9 303 1 296 310 0 0 chrX 5632906 5632993 -156966937 + MER81 DNA DNA 9 95 -19 2220 133 33 33 chrX 5633534 5633896 -156966034 + THE1B LTR MaLR 3 364 0 1998 130 33 7 chrX 5634310 5634611 -156965319 + AluSx SINE Alu 1 309 -3 2281 118 0 13 chrX 5635415 5635730 -156964200 - AluSx SINE Alu -1 311 1 2069 119 0 7 chrX 5637577 5637870 -156962060 + AluSq SINE Alu 1 291 -22 608 199 21 14 chrX 5638742 5638883 -156961047 - FLAM_C SINE Alu 0 143 2 2030 187 171 79 chrX 5642478 5643360 -156956570 + L1 LINE L1 3226 4188 -1958 1358 183 39 86 chrX 5644099 5644481 -156955449 - MLT1A1 LTR MaLR -1 364 1 352 219 129 45 chrX 5645872 5646027 -156953903 + MER34 LTR ERV1 368 535 -7 2336 102 3 0 chrX 5646481 5646776 -156953154 - AluSx SINE Alu -16 296 1 2313 96 3 0 chrX 5648784 5649075 -156950855 - AluSx SINE Alu -20 292 1 475 218 192 34 chrX 5649234 5649468 -156950462 + L1MEc LINE L1 657 927 -5469 1236 235 57 24 chrX 5649491 5649916 -156950014 + L1MEc LINE L1 2231 2669 -3546 4036 190 47 25 chrX 5650037 5651674 -156948256 - L1MB3 LINE L1 -303 5880 4211 2850 188 52 45 chrX 5652094 5652807 -156947123 - LTR62 LTR ERVK -1 718 1 657 259 56 39 chrX 5652946 5653266 -156946664 - LTR16A LTR ERVL -20 430 48 1852 44 4 18 chrX 5653798 5654025 -156945905 - AluY SINE Alu -87 224 1 229 321 28 9 chrX 5654533 5654642 -156945288 + MIR SINE MIR 2 112 -150 1423 149 12 4 chrX 5656230 5656478 -156943452 - L1MB3 LINE L1 -10 6173 5924 1402 136 0 15 chrX 5656479 5656685 -156943245 + MER51A LTR ERV1 1 203 -431 1608 167 0 74 chrX 5657063 5657374 -156942556 + AluJb SINE Alu 1 288 -24 2196 106 7 10 chrX 5657752 5658053 -156941877 - AluSx SINE Alu -12 300 1 226 130 0 56 chrX 5658802 5658856 -156941074 + L1MB3 LINE L1 6129 6179 -4 1347 77 0 22 chrX 5660234 5660417 -156939513 - THE1B LTR MaLR -185 179 1 1872 136 110 8 chrX 5660888 5661242 -156938688 - MLT1B LTR MaLR 0 390 1 30 0 0 0 chrX 5661269 5661299 -156938631 + AT_rich Low_complexity Low_complexity 1 30 0 2168 125 0 0 chrX 5662499 5662794 -156937136 - AluSx SINE Alu -17 295 1 193 290 0 16 chrX 5663875 5663937 -156935993 - L2 LINE L2 -50 3263 3203 209 32 0 32 chrX 5664816 5664847 -156935083 + (CA)n Simple_repeat Simple_repeat 1 30 0 1128 111 0 0 chrX 5664985 5665129 -156934801 + AluJb SINE Alu 1 144 -168 1517 163 0 0 chrX 5665133 5665366 -156934564 + AluSg/x SINE Alu 77 309 -3 796 224 89 77 chrX 5665739 5666091 -156933839 + MLT1D LTR MaLR 1 356 -34 188 362 86 4 chrX 5667866 5668145 -156931785 - L2 LINE L2 -1266 2048 1747 288 77 0 0 chrX 5669101 5669140 -156930790 - MADE1 DNA Mariner -41 39 1 458 320 121 37 chrX 5670328 5671300 -156928630 - L1MC4 LINE L1 -210 7832 6779 1891 84 0 4 chrX 5671478 5671715 -156928215 + AluSq SINE Alu 65 300 -13 2355 83 6 16 chrX 5671719 5672031 -156927899 + AluY SINE Alu 1 309 -2 395 304 14 0 chrX 5672521 5672659 -156927271 + L1MC5 LINE L1 7287 7426 -535 2132 138 0 0 chrX 5672832 5673129 -156926801 - AluSx SINE Alu -15 297 1 451 231 63 42 chrX 5673796 5673939 -156925991 - MER3 DNA MER1_type -63 146 1 180 0 0 0 chrX 5675134 5675154 -156924776 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 14475 129 46 11 chrX 5675192 5677099 -156922831 + Tigger1 DNA MER2_type 30 2035 -383 2232 110 0 19 chrX 5677099 5677408 -156922522 - AluSx SINE Alu -9 303 1 14475 129 46 11 chrX 5677408 5677807 -156922123 + Tigger1 DNA MER2_type 2035 2418 0 945 232 36 4 chrX 5679476 5679729 -156920201 + MER33 DNA MER1_type 1 255 -69 21 0 0 0 chrX 5680781 5680802 -156919128 + AT_rich Low_complexity Low_complexity 1 21 0 298 194 48 0 chrX 5681229 5681291 -156918639 + MIR SINE MIR 60 124 -84 198 0 0 0 chrX 5681293 5681315 -156918615 + (T)n Simple_repeat Simple_repeat 1 22 0 233 289 0 0 chrX 5681672 5681755 -156918175 - MER5A DNA MER1_type -80 109 27 728 199 33 62 chrX 5681792 5682003 -156917927 - MER20 DNA MER1_type -13 206 2 846 131 81 44 chrX 5683564 5683724 -156916206 + BC200 scRNA scRNA 2 167 -33 1676 184 143 10 chrX 5684061 5684473 -156915457 - MLT1C LTR MaLR 0 467 1 2284 105 3 3 chrX 5684671 5684977 -156914953 - AluSg SINE Alu -4 306 1 290 261 23 11 chrX 5686205 5686293 -156913637 + MER5A DNA MER1_type 16 104 -85 2438 86 0 0 chrX 5686404 5686708 -156913222 - AluY SINE Alu -7 304 1 1822 154 0 7 chrX 5686765 5687075 -156912855 - AluSx SINE Alu 0 308 1 326 262 194 16 chrX 5687151 5687342 -156912588 + Charlie7 DNA MER1_type 251 475 -2137 209 231 0 15 chrX 5687669 5687734 -156912196 + CT-rich Low_complexity Low_complexity 4 67 0 389 272 1 25 chrX 5687748 5688474 -156911456 + CT-rich Low_complexity Low_complexity 1 709 0 191 407 7 15 chrX 5688968 5689103 -156910827 - MIR SINE MIR -88 174 41 239 265 37 19 chrX 5689946 5690108 -156909822 + (TA)n Simple_repeat Simple_repeat 2 166 0 893 168 96 66 chrX 5690160 5690322 -156909608 - MER6B DNA MER2_type -655 210 39 1980 147 0 10 chrX 5690322 5690621 -156909309 + AluJb SINE Alu 1 296 -16 893 168 96 66 chrX 5690621 5690655 -156909275 - MER6B DNA MER2_type -826 39 8 197 108 27 0 chrX 5690796 5690833 -156909097 + (TA)n Simple_repeat Simple_repeat 1 38 0 293 321 47 0 chrX 5692181 5692287 -156907643 - MIR SINE MIR -124 138 28 262 291 0 0 chrX 5692480 5692566 -156907364 + C-rich Low_complexity Low_complexity 2 87 0 270 212 15 15 chrX 5692924 5692990 -156906940 - MER20 DNA MER1_type -147 72 7 2141 99 0 38 chrX 5693028 5693341 -156906589 + AluSg SINE Alu 1 301 -9 863 247 14 23 chrX 5693366 5693585 -156906345 - MER20 DNA MER1_type 0 219 3 650 272 34 67 chrX 5693915 5694095 -156905835 + MER46C DNA MER2_type 2 168 -170 1890 144 3 17 chrX 5694095 5694387 -156905543 - AluSx SINE Alu -24 288 1 650 272 34 67 chrX 5694387 5694533 -156905397 + MER46C DNA MER2_type 168 317 -21 1593 177 0 62 chrX 5694993 5695315 -156904615 + AluJb SINE Alu 7 308 -4 829 221 67 14 chrX 5695391 5695599 -156904331 - MER20 DNA MER1_type 0 219 1 1533 176 42 29 chrX 5695630 5695936 -156903994 + AluJo SINE Alu 1 310 -2 935 215 68 0 chrX 5695961 5696166 -156903764 - MER20 DNA MER1_type 0 219 1 2010 157 0 7 chrX 5696266 5696571 -156903359 - AluJb SINE Alu -9 303 1 1672 225 102 88 chrX 5697239 5697472 -156902458 - MLT1E1 LTR MaLR 0 654 426 2181 110 0 0 chrX 5697472 5697779 -156902151 - AluSx SINE Alu 0 307 1 1672 225 102 88 chrX 5697779 5697965 -156901965 - MLT1E1 LTR MaLR -228 426 244 1595 168 65 20 chrX 5697965 5698257 -156901673 - AluJo SINE Alu -7 305 1 1672 225 102 88 chrX 5698257 5698480 -156901450 - MLT1E1 LTR MaLR -410 244 1 1869 184 71 121 chrX 5699243 5699878 -156900052 - L1MB7 LINE L1 -16 6168 5566 944 199 0 0 chrX 5700715 5700871 -156899059 - AluJo SINE Alu -26 286 131 40 0 0 0 chrX 5700873 5700913 -156899017 + AT_rich Low_complexity Low_complexity 1 40 0 844 149 8 8 chrX 5700913 5701047 -156898883 - AluJo SINE Alu -177 135 2 24 0 0 0 chrX 5701047 5701071 -156898859 + AT_rich Low_complexity Low_complexity 1 24 0 493 236 55 22 chrX 5702172 5702354 -156897576 - L1MB8 LINE L1 -3 6175 5988 6358 91 6 9 chrX 5703204 5704080 -156895850 - L1PA10 LINE L1 -11 6157 5285 207 0 0 0 chrX 5705443 5705466 -156894464 + (A)n Simple_repeat Simple_repeat 1 23 0 1672 186 0 28 chrX 5705466 5705784 -156894146 + AluJb SINE Alu 1 310 0 575 278 52 62 chrX 5706514 5706772 -156893158 - Charlie2 DNA MER1_type -2497 285 29 2703 102 19 16 chrX 5706772 5707146 -156892784 - THE1C LTR MaLR 0 375 1 575 278 52 62 chrX 5707146 5707175 -156892755 - Charlie2 DNA MER1_type -2753 29 1 736 208 20 0 chrX 5707336 5707485 -156892445 - MLT1D LTR MaLR -350 155 4 254 29 29 0 chrX 5707713 5707748 -156892182 + (TA)n Simple_repeat Simple_repeat 2 37 0 1741 110 75 12 chrX 5707821 5708076 -156891854 - AluSx SINE Alu -41 271 1 1396 197 97 0 chrX 5708091 5708350 -156891580 - AluJo SINE Alu -24 288 5 1483 171 17 31 chrX 5709955 5710272 -156889658 + L1MA7 LINE L1 5932 6228 -63 3821 108 45 6 chrX 5710325 5710832 -156889098 - MER1A DNA MER1_type 0 527 1 523 192 50 0 chrX 5711445 5711544 -156888386 + L1PA16 LINE L1 6063 6166 0 1439 179 58 24 chrX 5712069 5712360 -156887570 + AluJb SINE Alu 1 301 -11 1068 163 80 72 chrX 5713102 5713366 -156886564 + MLT1C LTR MaLR 5 270 -197 269 342 0 0 chrX 5713695 5713771 -156886159 - MIR SINE MIR -136 126 51 2302 110 7 0 chrX 5713987 5714288 -156885642 + AluSq SINE Alu 1 303 -10 708 272 37 5 chrX 5714882 5715099 -156884831 - MER46C DNA MER2_type -9 329 106 764 230 143 0 chrX 5715545 5715741 -156884189 - MER58A DNA MER1_type 0 224 1 3259 173 56 45 chrX 5716234 5716944 -156882986 - LTR62 LTR ERVK -1 718 1 645 259 56 39 chrX 5717083 5717403 -156882527 - LTR16A LTR ERVL -20 430 48 361 259 22 30 chrX 5717752 5717887 -156882043 - Tigger4(Zombi) DNA MER2_type -2194 537 404 289 288 51 42 chrX 5717984 5718102 -156881828 - MER46C DNA MER2_type -217 121 3 755 256 34 0 chrX 5718594 5718770 -156881160 - MER20 DNA MER1_type -33 186 5 980 208 122 20 chrX 5719623 5719868 -156880062 - MER58B DNA MER1_type 0 341 72 232 317 92 46 chrX 5719958 5720220 -156879710 - L2 LINE L2 -72 3241 2968 3471 117 17 0 chrX 5720246 5720724 -156879206 - MER1A DNA MER1_type 0 529 44 1659 167 62 0 chrX 5720767 5721043 -156878887 + AluJb SINE Alu 1 293 -19 23 0 0 0 chrX 5721046 5721069 -156878861 + AT_rich Low_complexity Low_complexity 1 23 0 222 336 18 26 chrX 5722419 5722532 -156877398 + MIR SINE MIR 29 140 -122 2195 114 0 0 chrX 5722546 5722843 -156877087 + AluSx SINE Alu 2 298 -14 666 230 141 0 chrX 5723017 5723208 -156876722 + MER20 DNA MER1_type 2 219 0 207 0 0 0 chrX 5723641 5723664 -156876266 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1842 79 0 4 chrX 5724178 5724406 -156875524 - AluSg SINE Alu -22 288 62 1298 202 65 144 chrX 5724406 5725005 -156874925 - LTR8A LTR ERV1 -142 585 34 2001 172 48 3 chrX 5725048 5725380 -156874550 - MER7A DNA MER2_type 0 346 2 1820 161 36 13 chrX 5726274 5726772 -156873158 - MER34C LTR ERV1 -2 583 35 203 301 95 70 chrX 5727011 5727423 -156872507 + L2 LINE L2 2555 2976 -338 237 299 93 28 chrX 5727555 5727592 -156872338 + L2 LINE L2 3200 3233 -80 3688 126 45 0 chrX 5727592 5728122 -156871808 - MER41C LTR ERV1 0 554 1 237 299 93 28 chrX 5728122 5728191 -156871739 + L2 LINE L2 3233 3313 0 2166 220 60 73 chrX 5728325 5729025 -156870905 - LTR8 LTR ERV1 0 691 1 21 0 0 0 chrX 5730139 5730160 -156869770 + AT_rich Low_complexity Low_complexity 1 21 0 339 25 0 0 chrX 5731213 5731253 -156868677 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 184 130 43 0 chrX 5731253 5731299 -156868631 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 664 166 27 0 chrX 5731312 5731537 -156868393 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 727 131 0 0 chrX 5732189 5732296 -156867634 + MLT2B3 LTR ERVL 3 109 -445 618 132 2 0 chrX 5732296 5732498 -156867432 + ERVL-B3 LTR ERVL 5352 5521 -243 1482 144 16 16 chrX 5732653 5732903 -156867027 + ERVL-B3 LTR ERVL 5508 5757 -7 1306 157 30 17 chrX 5732903 5733133 -156866797 + MLT2B3 LTR ERVL 1 233 -321 444 224 0 0 chrX 5733135 5733305 -156866625 + CT-rich Low_complexity Low_complexity 1 170 0 636 268 0 0 chrX 5733341 5733479 -156866451 + MLT2B3 LTR ERVL 224 361 -193 197 160 0 20 chrX 5734008 5734058 -156865872 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1787 171 0 4 chrX 5734068 5734349 -156865581 - AluJo SINE Alu -30 282 3 310 279 82 20 chrX 5734547 5734694 -156865236 - L1ME LINE L1 -647 5474 5319 705 200 0 17 chrX 5734733 5734913 -156865017 + CT-rich Low_complexity Low_complexity 2 178 0 524 217 32 5 chrX 5734962 5735188 -156864742 + CT-rich Low_complexity Low_complexity 1 232 0 1247 170 134 50 chrX 5735847 5736173 -156863757 - AluJo SINE Alu 0 351 3 1134 270 68 31 chrX 5736173 5736750 -156863180 - HAL1 LINE L1 -929 1578 981 347 211 0 0 chrX 5736778 5736849 -156863081 + MER116 DNA Mariner 9 79 -1 1396 200 74 0 chrX 5737191 5737461 -156862469 + AluJb SINE Alu 5 294 -18 451 250 0 10 chrX 5738684 5738788 -156861142 - L1MD1 LINE L1 -8 6234 6132 263 161 18 0 chrX 5738875 5738931 -156860999 + CT-rich Low_complexity Low_complexity 3 59 0 1078 222 33 27 chrX 5738952 5739412 -156860518 - MLT1D LTR MaLR -5 500 1 22 35 0 0 chrX 5739588 5739617 -156860313 + AT_rich Low_complexity Low_complexity 1 29 0 183 189 0 0 chrX 5739623 5739676 -156860254 + (TA)n Simple_repeat Simple_repeat 2 54 0 79 44 0 0 chrX 5739688 5739802 -156860128 + AT_rich Low_complexity Low_complexity 1 114 0 347 0 0 79 chrX 5739840 5739903 -156860027 + (TTTTTA)n Simple_repeat Simple_repeat 1 58 0 5805 61 4 8 chrX 5739905 5740638 -156859292 - L1PA8A LINE L1 -1 6130 5401 275 217 0 43 chrX 5740638 5740730 -156859200 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 26 0 0 0 chrX 5740730 5740756 -156859174 + AT_rich Low_complexity Low_complexity 1 26 0 436 225 40 0 chrX 5740756 5740966 -156858964 + (TA)n Simple_repeat Simple_repeat 1 218 0 23 33 0 0 chrX 5740977 5741007 -156858923 + AT_rich Low_complexity Low_complexity 1 30 0 1323 123 53 96 chrX 5741106 5741407 -156858523 - L1MA8 LINE L1 -3 6288 6001 845 255 104 9 chrX 5741437 5741760 -156858170 - MLT1E3 LTR MaLR 0 624 223 226 39 0 0 chrX 5741801 5741827 -156858103 - MLT1E3 LTR MaLR -627 27 2 2079 134 0 10 chrX 5742446 5742760 -156857170 + AluSx SINE Alu 1 311 -1 325 242 21 32 chrX 5743172 5743267 -156856663 - MER34B LTR ERV1 0 565 472 506 186 31 21 chrX 5743267 5743364 -156856566 - AluJ/FLAM SINE Alu -213 99 2 350 260 80 27 chrX 5743754 5743904 -156856026 - MER34B LTR ERV1 -403 162 5 1663 169 10 29 chrX 5744059 5744366 -156855564 + AluJb SINE Alu 1 301 -11 2923 68 5 8 chrX 5744811 5745179 -156854751 - L1PB1 LINE L1 -3 6148 5782 1021 131 11 0 chrX 5745191 5745367 -156854563 + (TA)n Simple_repeat Simple_repeat 1 178 0 225 94 0 0 chrX 5745367 5745399 -156854531 + (CA)n Simple_repeat Simple_repeat 1 32 0 1218 86 0 0 chrX 5745411 5745573 -156854357 - L1PB1 LINE L1 -360 5791 5630 400 272 75 42 chrX 5745789 5746002 -156853928 + LTR33 LTR ERVL 5 224 -297 22 0 0 0 chrX 5746574 5746596 -156853334 + AT_rich Low_complexity Low_complexity 1 22 0 1633 198 180 38 chrX 5746647 5747152 -156852778 - MER92B LTR ERV1 0 636 60 2260 160 22 33 chrX 5747152 5747603 -156852327 - MER31A LTR ERV1 0 485 40 366 183 108 11 chrX 5748162 5748255 -156851675 + ORSL DNA AcHobo 150 251 -24 742 172 140 54 chrX 5748797 5748983 -156850947 - MER31A LTR ERV1 -283 202 1 321 226 0 0 chrX 5748984 5749046 -156850884 - MER92B LTR ERV1 -573 63 2 1778 222 60 11 chrX 5749156 5749662 -156850268 + LTR69 LTR ERVL 4 581 -7 723 338 129 39 chrX 5750454 5750803 -156849127 - L3 LINE CR1 -10 1567 1251 2563 40 3 3 chrX 5750803 5751107 -156848823 - AluY SINE Alu -7 304 1 723 338 129 39 chrX 5751107 5751709 -156848221 - L3 LINE CR1 -326 1251 530 1774 182 6 56 chrX 5752139 5752515 -156847415 + MLT1A1 LTR MaLR 1 361 -4 207 0 0 0 chrX 5752788 5752811 -156847119 + (A)n Simple_repeat Simple_repeat 1 23 0 5564 133 16 19 chrX 5753015 5754064 -156845866 - L1PB4 LINE L1 0 6156 5102 239 224 77 109 chrX 5754567 5754650 -156845280 + MIR3 SINE MIR 51 128 -80 2014 191 14 3 chrX 5754650 5755011 -156844919 + MLT1A1 LTR MaLR 1 365 0 239 224 77 109 chrX 5755011 5755083 -156844847 + MIR3 SINE MIR 128 201 -7 2928 199 11 2 chrX 5755544 5756077 -156843853 - MER68 LTR ERV1 -24 538 1 3089 233 54 40 chrX 5756254 5756871 -156843059 - L1ME2 LINE L1 -1 6163 5529 1879 143 7 10 chrX 5756871 5757164 -156842766 + AluJo SINE Alu 1 292 -20 3089 233 54 40 chrX 5757164 5757536 -156842394 - L1ME2 LINE L1 -635 5529 5164 21 0 0 0 chrX 5757708 5757729 -156842201 + AT_rich Low_complexity Low_complexity 1 21 0 4678 175 23 19 chrX 5757967 5759021 -156840909 - L1MB1 LINE L1 0 6168 5113 250 309 97 27 chrX 5759068 5759327 -156840603 - L1MCa LINE L1 -5226 1200 924 1588 155 54 0 chrX 5760158 5760304 -156839626 - AluJo SINE Alu -32 280 113 216 0 0 0 chrX 5760304 5760328 -156839602 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1588 155 54 0 chrX 5760328 5760439 -156839491 - AluJo SINE Alu -199 113 9 1653 175 51 74 chrX 5760486 5760763 -156839167 + L1MB7 LINE L1 5517 5784 -400 2373 126 56 6 chrX 5760763 5761120 -156838810 - THE1C LTR MaLR 0 375 1 1653 175 51 74 chrX 5761120 5761236 -156838694 + L1MB7 LINE L1 5784 5901 -283 1144 170 95 57 chrX 5761243 5761645 -156838285 + L1MB5 LINE L1 5611 6173 -1 3216 118 4 28 chrX 5761730 5762189 -156837741 + MER83 LTR ERV1 1 448 0 1069 159 0 32 chrX 5762953 5762992 -156836938 - L1M1 LINE L1 -581 5722 5683 2196 149 10 44 chrX 5762992 5763343 -156836587 + THE1C LTR MaLR 1 339 -36 2107 106 0 0 chrX 5763343 5763617 -156836313 - AluSx SINE Alu -2 310 37 2196 149 10 44 chrX 5763617 5763653 -156836277 + THE1C LTR MaLR 339 375 0 1069 159 0 32 chrX 5763653 5763802 -156836128 - L1M1 LINE L1 -620 5683 5540 1464 190 46 21 chrX 5765750 5766034 -156833896 + AluJb SINE Alu 1 291 -21 1714 80 98 0 chrX 5766130 5766416 -156833514 - MER4-int LTR ERV1 -3548 3050 2737 1490 148 57 4 chrX 5766416 5766660 -156833270 + LTR8 LTR ERV1 1 257 -434 4714 95 62 25 chrX 5766660 5767450 -156832480 - MER4-int LTR ERV1 -4103 2495 1677 479 77 55 0 chrX 5767481 5767572 -156832358 - MER4-int LTR ERV1 -5372 1226 1131 919 131 0 29 chrX 5767572 5767709 -156832221 - AluSq/x SINE Alu -180 133 1 238 269 39 0 chrX 5767709 5767787 -156832143 - L1M3 LINE L1 -293 5875 5795 830 113 0 0 chrX 5767823 5767938 -156831992 + MLT2B1 LTR ERVL 1 115 -405 1411 181 21 31 chrX 5767942 5768230 -156831700 - L1PB4 LINE L1 -2 6154 5870 806 127 13 64 chrX 5768299 5768381 -156831549 - L1PB4 LINE L1 -284 5872 5787 360 0 0 0 chrX 5768381 5768421 -156831509 + (TG)n Simple_repeat Simple_repeat 2 41 0 806 127 13 64 chrX 5768421 5768438 -156831492 - L1PB4 LINE L1 -369 5787 5771 423 0 0 0 chrX 5768438 5768485 -156831445 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 806 127 13 64 chrX 5768485 5768541 -156831389 - L1PB4 LINE L1 -385 5771 5724 269 319 104 8 chrX 5768573 5768708 -156831222 - MIR3 SINE MIR -2 206 58 1668 189 0 10 chrX 5768806 5769097 -156830833 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 5769102 5769127 -156830803 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chrX 5769238 5769276 -156830654 + AT_rich Low_complexity Low_complexity 1 38 0 1946 107 41 17 chrX 5770141 5770431 -156829499 - AluSg SINE Alu -13 297 1 180 0 0 0 chrX 5770725 5770745 -156829185 + (CA)n Simple_repeat Simple_repeat 1 20 0 384 22 0 0 chrX 5770749 5770794 -156829136 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chrX 5770793 5770813 -156829117 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 300 313 78 11 chrX 5770887 5771066 -156828864 + L2 LINE L2 2397 2587 -727 1864 237 86 34 chrX 5771925 5772483 -156827447 - MLT1E LTR MaLR -6 587 1 39 68 0 0 chrX 5772529 5772603 -156827327 + AT_rich Low_complexity Low_complexity 1 74 0 1270 137 0 41 chrX 5772672 5772891 -156827039 + AluJb SINE Alu 101 310 -2 272 282 136 9 chrX 5772907 5773017 -156826913 - MIR SINE MIR -74 188 65 1858 166 0 0 chrX 5773344 5773622 -156826308 - AluJo SINE Alu -34 278 1 1970 136 0 17 chrX 5774041 5774343 -156825587 + AluSx SINE Alu 1 297 -15 1082 153 13 98 chrX 5774835 5775071 -156824859 + MER20 DNA MER1_type 3 218 -1 228 211 42 42 chrX 5775151 5775222 -156824708 + MIR SINE MIR 186 256 -6 513 118 11 65 chrX 5776522 5776578 -156823352 - Alu SINE Alu -13 297 246 2420 38 0 17 chrX 5776578 5776865 -156823065 - AluY SINE Alu -29 282 1 513 118 11 65 chrX 5776865 5776901 -156823029 - Alu SINE Alu -64 246 210 240 35 0 0 chrX 5777297 5777326 -156822604 + (TG)n Simple_repeat Simple_repeat 2 30 0 989 169 6 17 chrX 5777955 5778132 -156821798 + MER20 DNA MER1_type 45 219 0 1046 126 69 6 chrX 5778957 5779131 -156820799 - L1MB3 LINE L1 -2 6181 5997 21 0 0 0 chrX 5779144 5779165 -156820765 + AT_rich Low_complexity Low_complexity 1 21 0 397 238 54 61 chrX 5779934 5780081 -156819849 + MIR3 SINE MIR 37 182 -26 1562 192 4 4 chrX 5780206 5780487 -156819443 - AluJo SINE Alu -31 281 1 271 318 34 0 chrX 5780488 5780576 -156819354 + MIR3 SINE MIR 108 198 -10 237 65 0 0 chrX 5780664 5780695 -156819235 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 245 291 186 33 chrX 5780953 5781163 -156818767 - L2 LINE L2 -963 2351 2110 222 260 153 33 chrX 5781488 5781638 -156818292 - L2 LINE L2 -1202 2112 1945 424 146 73 0 chrX 5781838 5781920 -156818010 + L1PB4 LINE L1 6062 6149 -7 1466 189 0 23 chrX 5781960 5782224 -156817706 + AluJo SINE Alu 28 285 -27 24 0 0 0 chrX 5782224 5782248 -156817682 + AT_rich Low_complexity Low_complexity 1 24 0 220 310 0 17 chrX 5782268 5782326 -156817604 - MIR3 SINE MIR -53 155 99 1715 184 7 0 chrX 5783130 5783412 -156816518 + AluJo SINE Alu 1 284 -28 2357 147 11 3 chrX 5784069 5784430 -156815500 - MLT1A1 LTR MaLR 0 365 2 2170 113 3 10 chrX 5784831 5785141 -156814789 - AluSg SINE Alu -2 308 1 462 99 0 8 chrX 5787229 5787443 -156812487 + AluSx SINE Alu 1 286 -26 335 60 20 0 chrX 5788061 5788111 -156811819 + (TG)n Simple_repeat Simple_repeat 2 52 0 727 170 8 40 chrX 5788179 5788688 -156811242 + (TAGA)n Simple_repeat Simple_repeat 1 492 0 2560 45 0 0 chrX 5790146 5790434 -156809496 - AluY SINE Alu -23 288 1 1967 119 0 18 chrX 5790663 5790969 -156808961 - AluSx SINE Alu 0 301 1 468 216 31 68 chrX 5792425 5792587 -156807343 - MLT1J2 LTR MaLR -43 406 248 1882 149 10 129 chrX 5793225 5793332 -156806598 + MER7A DNA MER2_type 1 119 -2919 2347 98 0 0 chrX 5793332 5793628 -156806302 - AluSx SINE Alu -16 296 1 1882 149 10 129 chrX 5793628 5793915 -156806015 + MER7A DNA MER2_type 119 346 0 341 215 11 0 chrX 5794008 5794101 -156805829 + (TG)n Simple_repeat Simple_repeat 1 94 0 202 298 197 10 chrX 5995619 5995817 -156604113 - L2 LINE L2 -589 2725 2491 205 208 28 0 chrX 5997471 5997543 -156602387 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 357 282 66 54 chrX 5997722 5997981 -156601949 + L1MA9 LINE L1 6013 6274 -38 225 134 0 90 chrX 5998032 5998062 -156601868 + (TAAAAA)n Simple_repeat Simple_repeat 4 26 -38 1220 60 0 0 chrX 5998062 5998213 -156601717 + L1PA3 LINE L1 6002 6152 -3 225 134 0 90 chrX 5998213 5998249 -156601681 + (TAAAAA)n Simple_repeat Simple_repeat 26 64 0 279 0 0 0 chrX 5998667 5998698 -156601232 + (A)n Simple_repeat Simple_repeat 1 31 0 763 229 39 0 chrX 5998703 5998856 -156601074 + FRAM SINE Alu 1 159 -7 2333 109 0 0 chrX 6000256 6000567 -156599363 - AluSx SINE Alu -1 311 1 1711 154 11 0 chrX 6000698 6000970 -156598960 - AluJo SINE Alu -3 309 35 26 0 0 0 chrX 6001029 6001055 -156598875 + AT_rich Low_complexity Low_complexity 1 26 0 286 256 13 0 chrX 6001253 6001331 -156598599 - MLT1F LTR MaLR -463 79 1 200 219 12 37 chrX 6001892 6001974 -156597956 + A-rich Low_complexity Low_complexity 5 84 0 581 259 151 22 chrX 6002428 6002660 -156597270 - MIR SINE MIR 0 262 1 5481 90 15 0 chrX 6002971 6003762 -156596168 - L1PA10 LINE L1 -4 6164 5362 754 132 0 0 chrX 6003758 6003887 -156596043 + L1PA10 LINE L1 5222 5350 -796 * 207 100 0 0 chrX 6003962 6003992 -156595938 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chrX 6005147 6005175 -156594755 + AT_rich Low_complexity Low_complexity 1 28 0 288 343 0 0 chrX 6006132 6006231 -156593699 - MIR SINE MIR -10 252 154 1391 192 14 52 chrX 6006431 6006718 -156593212 - AluJb SINE Alu -36 276 1 251 299 0 73 chrX 6006729 6006866 -156593064 - MIR SINE MIR -64 144 18 857 136 0 0 chrX 6007157 6007289 -156592641 - FLAM_C SINE Alu 0 133 2 680 219 11 48 chrX 6007678 6007865 -156592065 - MER20 DNA MER1_type 0 219 40 2177 136 72 13 chrX 6007873 6008264 -156591666 - MSTB LTR MaLR -12 414 1 244 211 19 0 chrX 6008264 6008310 -156591620 - MER20 DNA MER1_type -172 47 1 308 323 111 72 chrX 6008347 6009084 -156590846 + L2 LINE L2 2211 2976 -338 22 0 0 0 chrX 6009357 6009379 -156590551 + AT_rich Low_complexity Low_complexity 1 22 0 217 310 147 0 chrX 6009642 6009758 -156590172 - MIR SINE MIR -21 241 109 671 284 31 7 chrX 6009774 6010182 -156589748 - MLT1E3 LTR MaLR -147 477 30 247 221 116 0 chrX 6010959 6011045 -156588885 - MER20 DNA MER1_type -100 119 24 2136 87 13 52 chrX 6011977 6012287 -156587643 + AluSx SINE Alu 1 298 -14 343 289 114 30 chrX 6013142 6013343 -156586587 + L1MC4a LINE L1 5703 5920 -1888 2171 213 30 70 chrX 6013575 6014270 -156585660 + LTR8 LTR ERV1 25 691 0 398 250 25 0 chrX 6015911 6015991 -156583939 + MER5A DNA MER1_type 2 83 -106 371 351 0 7 chrX 6016434 6016582 -156583348 - MIR SINE MIR -48 214 68 2132 138 0 0 chrX 6016974 6017285 -156582645 - AluSx SINE Alu -1 311 1 700 314 90 0 chrX 6017720 6018054 -156581876 + L2 LINE L2 2575 2938 -376 290 238 0 0 chrX 6018168 6018231 -156581699 + L2 LINE L2 3210 3272 0 216 413 0 0 chrX 6018909 6019001 -156580929 + MIR3 SINE MIR 69 160 -48 1478 159 4 4 chrX 6019576 6019833 -156580097 - Tigger3(Golem) DNA MER2_type -2 3027 2771 590 197 21 9 chrX 6019830 6019958 -156579972 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 779 193 40 0 chrX 6020048 6020198 -156579732 - FRAM SINE Alu -16 160 5 225 0 0 0 chrX 6020413 6020438 -156579492 + (CA)n Simple_repeat Simple_repeat 2 26 0 581 272 6 12 chrX 6020527 6020696 -156579234 + MER20 DNA MER1_type 50 217 -2 3122 167 19 15 chrX 6020837 6021429 -156578501 - LTR26 LTR ERV1 0 603 10 2160 135 0 0 chrX 6022004 6022308 -156577622 - AluSx SINE Alu -8 304 1 3727 94 10 52 chrX 6022397 6023015 -156576915 - LTR14B LTR ERVK 0 608 17 2449 106 30 8 chrX 6023771 6024138 -156575792 + THE1C LTR MaLR 1 375 0 822 195 41 59 chrX 6024262 6024483 -156575447 + MER58A DNA MER1_type 7 223 -1 507 60 0 0 chrX 6025154 6025221 -156574709 + (TG)n Simple_repeat Simple_repeat 1 67 0 673 211 34 11 chrX 6025370 6025545 -156574385 - MER3 DNA MER1_type -12 197 19 309 85 0 0 chrX 6026578 6026625 -156573305 + L1MA5A LINE L1 6241 6287 -10 31 0 0 0 chrX 6027034 6027065 -156572865 + AT_rich Low_complexity Low_complexity 1 31 0 1246 132 0 0 chrX 6027065 6027239 -156572691 - AluSq SINE Alu -24 289 116 183 42 0 0 chrX 6027428 6027452 -156572478 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 840 137 0 0 chrX 6027452 6027569 -156572361 - AluJb SINE Alu -195 117 1 346 363 61 9 chrX 6028314 6028526 -156571404 - L1ME LINE L1 -340 5781 5559 1662 165 36 6 chrX 6030153 6030487 -156569443 + L1MB7 LINE L1 5458 5801 -383 2220 52 38 3 chrX 6030609 6030896 -156569034 + AluY SINE Alu 2 298 -13 244 275 14 0 chrX 6031270 6031339 -156568591 - LTR41 LTR ERVL -613 160 91 1510 217 14 6 chrX 6031457 6031812 -156568118 + L1MB7 LINE L1 5814 6171 -13 4515 127 28 1 chrX 6031857 6032604 -156567326 - L1PB4 LINE L1 -2 6154 5388 243 103 0 0 chrX 6032817 6032856 -156567074 + (T)n Simple_repeat Simple_repeat 1 39 0 656 41 70 23 chrX 6036059 6036230 -156563700 + (TA)n Simple_repeat Simple_repeat 2 180 0 1570 169 47 32 chrX 6036230 6036509 -156563421 - AluJo SINE Alu -26 286 4 249 313 0 38 chrX 6039034 6039114 -156560816 - L2 LINE L2 -10 3303 3227 1510 271 81 17 chrX 6039906 6040960 -156558970 + L1ME LINE L1 4437 5553 -611 456 162 60 43 chrX 6040962 6041079 -156558851 - MER66B LTR ERV1 0 486 368 181 302 32 16 chrX 6042061 6042124 -156557806 - MIR SINE MIR -188 74 11 263 270 10 50 chrX 6042142 6042242 -156557688 + MIR3 SINE MIR 3 98 -110 1440 226 28 22 chrX 6042366 6042728 -156557202 - MLT1A1 LTR MaLR -1 427 1 1649 205 7 7 chrX 6042958 6043251 -156556679 - AluJo SINE Alu -19 293 1 251 300 40 47 chrX 6043577 6043727 -156556203 - L2 LINE L2 -169 3144 2996 501 17 0 0 chrX 6044601 6044659 -156555271 + (CA)n Simple_repeat Simple_repeat 1 58 0 1744 168 3 3 chrX 6045684 6045969 -156553961 - AluJo SINE Alu -27 285 1 967 239 92 35 chrX 6046465 6046813 -156553117 + MLT1A2 LTR MaLR 1 368 -6 2302 126 36 14 chrX 6046896 6047252 -156552678 - THE1B LTR MaLR 0 364 1 1973 221 56 4 chrX 6047291 6047756 -156552174 + MLT1D LTR MaLR 16 504 -1 1109 128 0 0 chrX 6048661 6048840 -156551090 - L1PA16 LINE L1 -190 5976 5798 198 118 0 0 chrX 6049160 6049194 -156550736 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2173 109 0 13 chrX 6049266 6049568 -156550362 - AluSx SINE Alu -3 309 12 1551 160 97 4 chrX 6050397 6050666 -156549264 - AluJb SINE Alu -17 295 2 2318 57 7 10 chrX 6050677 6050975 -156548955 - AluY SINE Alu -14 297 1 218 310 39 62 chrX 6051170 6051299 -156548631 + MER5A DNA MER1_type 8 133 -56 390 271 102 45 chrX 6051603 6051885 -156548045 + MLT2C2 LTR ERVL 1 284 -113 234 0 0 0 chrX 6051903 6051929 -156548001 + (TC)n Simple_repeat Simple_repeat 1 26 0 570 175 17 34 chrX 6051959 6052316 -156547614 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 450 0 0 0 chrX 6052327 6052759 -156547171 + (TA)n Simple_repeat Simple_repeat 1 432 0 2014 125 67 25 chrX 6052398 6052709 -156547221 + THE1C LTR MaLR 1 330 -45 450 0 0 0 chrX 6052709 6052759 -156547171 + (TA)n Simple_repeat Simple_repeat 2 51 0 2014 125 67 25 chrX 6052759 6052807 -156547123 + THE1C LTR MaLR 330 375 0 396 88 0 0 chrX 6052808 6052865 -156547065 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 206 253 0 24 chrX 6052941 6053024 -156546906 + (TA)n Simple_repeat Simple_repeat 1 81 0 2112 123 7 0 chrX 6053142 6053443 -156546487 + AluSx SINE Alu 1 303 -9 1833 156 54 15 chrX 6054447 6054781 -156545149 - MER7A DNA MER2_type 0 346 2 192 191 0 0 chrX 6054781 6054817 -156545113 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 464 156 11 0 chrX 6054823 6054913 -156545017 - L1ME LINE L1 -444 5718 5628 285 261 6 70 chrX 6054914 6055071 -156544859 + L1ME2 LINE L1 5737 5883 -281 2771 7 3 3 chrX 6055573 6055883 -156544047 + AluYa5 SINE Alu 1 310 -1 965 178 4 62 chrX 6056086 6056327 -156543603 - L1MD2 LINE L1 -22 6337 6111 22 0 0 0 chrX 6056695 6056717 -156543213 + AT_rich Low_complexity Low_complexity 1 22 0 373 186 0 20 chrX 6056964 6057066 -156542864 + (CA)n Simple_repeat Simple_repeat 1 100 0 198 281 24 12 chrX 6058223 6058305 -156541625 + MIR SINE MIR 110 192 -70 634 204 98 91 chrX 6058505 6058666 -156541264 + MER39 LTR ERV1 417 582 -125 5095 36 0 2 chrX 6058666 6059276 -156540654 + L1PA4 LINE L1 5544 6152 -3 634 204 98 91 chrX 6059276 6059378 -156540552 + MER39 LTR ERV1 582 682 -25 25 65 0 0 chrX 6059467 6059513 -156540417 + AT_rich Low_complexity Low_complexity 1 46 0 264 274 12 0 chrX 6059635 6059719 -156540211 - L1ME1 LINE L1 -81 6085 6001 1877 239 29 11 chrX 6059761 6060322 -156539608 + L1ME2 LINE L1 5391 5961 -203 890 210 36 0 chrX 6060639 6060834 -156539096 + MER58A DNA MER1_type 12 213 -11 204 164 60 15 chrX 6062450 6062517 -156537413 + (TA)n Simple_repeat Simple_repeat 2 71 0 489 82 88 0 chrX 6062528 6062789 -156537141 + (TA)n Simple_repeat Simple_repeat 1 284 0 198 293 85 94 chrX 6062983 6063089 -156536841 + L2 LINE L2 3168 3272 0 2078 117 45 3 chrX 6063592 6063883 -156536047 + AluSx SINE Alu 1 303 -9 2761 124 7 29 chrX 6064000 6064444 -156535486 - Tigger2a DNA MER2_type 0 434 1 600 136 57 16 chrX 6066072 6066139 -156533791 + (TAGA)n Simple_repeat Simple_repeat 1 64 -290 230 95 24 0 chrX 6066139 6066181 -156533749 + (CATA)n Simple_repeat Simple_repeat 2 44 0 600 136 57 16 chrX 6066181 6066413 -156533517 + (TAGA)n Simple_repeat Simple_repeat 64 354 0 344 282 146 9 chrX 6068272 6068382 -156531548 - MER82 DNA MER2_type -6 647 523 1886 199 22 10 chrX 6068399 6068802 -156531128 - MER82 DNA MER2_type -245 408 1 247 169 46 0 chrX 6068802 6068867 -156531063 + (TATG)n Simple_repeat Simple_repeat 3 70 0 331 359 42 50 chrX 6070194 6070551 -156529379 + L1ME LINE L1 5329 5682 -439 1851 141 3 55 chrX 6070577 6070904 -156529026 + AluJb SINE Alu 1 310 -2 3953 137 27 10 chrX 6071844 6072543 -156527387 - MER50 LTR ERV1 -23 711 1 1863 143 159 24 chrX 6073680 6074057 -156525873 - MSTA LTR MaLR 0 428 1 33 0 0 0 chrX 6074454 6074487 -156525443 + AT_rich Low_complexity Low_complexity 1 33 0 384 331 186 33 chrX 6074501 6075072 -156524858 + L1MC4a LINE L1 5267 5924 -1884 225 295 13 0 chrX 6076657 6076735 -156523195 - L1ME LINE L1 -467 5654 5576 276 330 33 60 chrX 6077533 6077644 -156522286 - MIR3 SINE MIR -1 207 101 509 42 111 0 chrX 6077644 6077716 -156522214 - MADE1 DNA Mariner 0 80 1 276 330 33 60 chrX 6077716 6077786 -156522144 - MIR3 SINE MIR -107 101 31 184 339 48 48 chrX 6078627 6078751 -156521179 - MIR SINE MIR -64 144 21 904 89 37 0 chrX 6081280 6081415 -156518515 - L1PA10 LINE L1 -1 6167 6028 225 0 0 0 chrX 6081750 6081775 -156518155 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 501 32 0 0 chrX 6081774 6081837 -156518093 + (GA)n Simple_repeat Simple_repeat 2 64 0 2463 76 0 0 chrX 6083411 6083712 -156516218 + AluSx SINE Alu 1 301 -11 727 176 5 49 chrX 6084476 6084681 -156515249 + L1MA8 LINE L1 6091 6286 -5 282 172 31 16 chrX 6084738 6084802 -156515128 + MLT1F1 LTR MaLR 67 131 -436 1231 234 82 62 chrX 6084811 6085064 -156514866 + L1MC3 LINE L1 7206 7452 -333 237 33 0 0 chrX 6085064 6085094 -156514836 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1231 234 82 62 chrX 6085094 6085571 -156514359 + L1MC3 LINE L1 7452 7766 -19 991 151 12 8 chrX 6085382 6085641 -156514289 + (TA)n Simple_repeat Simple_repeat 1 260 0 * 759 155 0 0 chrX 6086309 6086425 -156513505 + AluSx SINE Alu 1 116 -197 3757 144 159 95 chrX 6086425 6087713 -156512217 - pTR5 LTR ERV1 -3 2435 744 945 144 163 6 chrX 6087713 6087873 -156512057 + AluSx SINE Alu 106 290 -22 837 235 23 18 chrX 6087953 6088170 -156511760 - MER20 DNA MER1_type -1 218 1 1820 241 4 12 chrX 6088899 6089396 -156510534 + L1MD3 LINE L1 7501 7993 -2 232 297 127 17 chrX 6089626 6089744 -156510186 - MIR SINE MIR -78 184 54 205 338 78 35 chrX 6089985 6090127 -156509803 + MIR3 SINE MIR 2 149 -59 2270 98 0 0 chrX 6091033 6091328 -156508602 - AluSg SINE Alu -15 295 1 265 206 50 14 chrX 6091429 6091570 -156508360 + (TA)n Simple_repeat Simple_repeat 1 146 0 334 293 45 30 chrX 6091617 6091819 -156508111 - L1MB1 LINE L1 -257 5905 5701 233 326 152 0 chrX 6091832 6091924 -156508006 - MER5B DNA MER1_type -61 117 12 249 248 67 48 chrX 6091931 6092036 -156507894 + MER5B DNA MER1_type 65 171 -7 2665 83 11 0 chrX 6092607 6092958 -156506972 - THE1A LTR MaLR 0 355 1 11253 105 15 0 chrX 6092958 6094514 -156505416 - THE1A-int LTR MaLR 0 1580 1 2693 73 8 6 chrX 6094514 6094868 -156505062 - THE1A LTR MaLR 0 355 1 647 191 7 40 chrX 6094872 6095024 -156504906 - L1M1 LINE L1 -7397 168 22 333 93 37 0 chrX 6095042 6095096 -156504834 - L1 LINE L1 -1379 4767 4712 1501 157 18 28 chrX 6095105 6095391 -156504539 - Tigger1 DNA MER2_type -2135 283 1 4195 179 26 11 chrX 6095483 6096009 -156503921 + L1MA4 LINE L1 4490 5006 -1296 2126 146 0 19 chrX 6096009 6096324 -156503606 + AluSx SINE Alu 1 309 -3 4195 179 26 11 chrX 6096324 6097315 -156502615 + L1MA4 LINE L1 5006 6067 -235 359 186 35 0 chrX 6097308 6097394 -156502536 + L1MB4 LINE L1 6091 6179 -1 * 1803 177 20 41 chrX 6098597 6099150 -156500780 - L1M2 LINE L1 -623 5689 5158 284 167 11 89 chrX 6099150 6099240 -156500690 + MLT2C1 LTR ERVL 260 342 -55 22 35 0 0 chrX 6099245 6099274 -156500656 + AT_rich Low_complexity Low_complexity 1 29 0 418 172 6 32 chrX 6101196 6101353 -156498577 + GA-rich Low_complexity Low_complexity 1 153 0 288 215 0 25 chrX 6101900 6102021 -156497909 + GA-rich Low_complexity Low_complexity 1 118 0 220 208 19 0 chrX 6102599 6102705 -156497225 + (TA)n Simple_repeat Simple_repeat 2 109 0 22 0 0 0 chrX 6102922 6102944 -156496986 + AT_rich Low_complexity Low_complexity 1 22 0 296 237 33 3 chrX 6102990 6103319 -156496611 + (TA)n Simple_repeat Simple_repeat 1 339 0 391 154 49 0 chrX 6103332 6103725 -156496205 + (TA)n Simple_repeat Simple_repeat 1 412 0 343 136 0 0 chrX 6106101 6106167 -156493763 - L1P4 LINE L1 -507 5659 5594 435 180 0 30 chrX 6106477 6106577 -156493353 + L1PA16 LINE L1 5733 5829 -337 1945 158 21 21 chrX 6106577 6106958 -156492972 + L1PA16 LINE L1 5784 6164 -2 288 0 0 0 chrX 6107400 6107432 -156492498 + (A)n Simple_repeat Simple_repeat 1 32 0 223 333 62 31 chrX 6107650 6107779 -156492151 - MIR SINE MIR 0 262 130 1744 94 148 0 chrX 6110195 6110451 -156489479 + AluSx SINE Alu 1 294 -18 2066 92 82 0 chrX 6110790 6111071 -156488859 - AluSg SINE Alu -6 304 1 606 165 8 8 chrX 6111464 6111585 -156488345 - MLT2B2 LTR ERVL -394 121 1 552 100 0 0 chrX 6111592 6111672 -156488258 - MADE1 DNA Mariner 0 80 1 2357 86 3 0 chrX 6111824 6112116 -156487814 + AluSp SINE Alu 1 293 -20 832 292 80 31 chrX 6112120 6112630 -156487300 - L1MEc LINE L1 -4336 2060 1526 2255 57 0 30 chrX 6113157 6113455 -156486475 - AluY SINE Alu -22 289 1 21 36 0 0 chrX 6113822 6113850 -156486080 + AT_rich Low_complexity Low_complexity 1 28 0 402 227 241 0 chrX 6115737 6115878 -156484052 - MER5A DNA MER1_type -6 183 9 1671 179 3 25 chrX 6116823 6117141 -156482789 - AluJo SINE Alu -1 311 1 1916 132 10 24 chrX 6117882 6118178 -156481752 - AluJb SINE Alu -20 292 1 1140 86 0 0 chrX 6118198 6118628 -156481302 + (TA)n Simple_repeat Simple_repeat 1 430 0 2253 107 0 7 chrX 6120925 6121349 -156478581 + AluY SINE Alu 1 422 0 310 233 25 42 chrX 6122249 6122369 -156477561 - L1MC4 LINE L1 0 8042 7925 216 0 0 0 chrX 6122384 6122408 -156477522 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1933 107 44 4 chrX 6122410 6122680 -156477250 - AluSq SINE Alu -32 281 1 846 104 19 13 chrX 6122687 6122841 -156477089 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 863 160 6 0 chrX 6122884 6123059 -156476871 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 761 191 8 0 chrX 6123076 6123342 -156476588 + (TCTG)n Simple_repeat Simple_repeat 1 268 0 1444 239 81 84 chrX 6123416 6124294 -156475636 - L1MC4 LINE L1 -120 7922 7048 403 306 95 31 chrX 6124958 6125180 -156474750 - L3 LINE CR1 -230 1347 1112 229 299 65 19 chrX 6125190 6125297 -156474633 + MER117 DNA MER1_type 33 144 -53 1802 181 13 19 chrX 6125310 6125624 -156474306 + AluJb SINE Alu 1 312 0 214 301 0 55 chrX 6125789 6125862 -156474068 - L3 LINE CR1 -621 956 888 270 0 0 0 chrX 6126875 6126905 -156473025 + (TG)n Simple_repeat Simple_repeat 1 30 0 249 33 0 0 chrX 6126905 6126935 -156472995 + (GA)n Simple_repeat Simple_repeat 1 30 0 267 286 17 76 chrX 6127631 6127667 -156472263 - MIR SINE MIR -71 191 154 2364 63 0 3 chrX 6127667 6127966 -156471964 - AluY SINE Alu -13 298 1 267 286 17 76 chrX 6127966 6128048 -156471882 - MIR SINE MIR -108 154 80 3471 139 13 95 chrX 6128357 6128855 -156471075 + MER44D DNA MER2_type 1 415 -2172 2447 83 32 29 chrX 6128855 6129229 -156470701 - THE1C LTR MaLR 0 375 1 3471 139 13 95 chrX 6129229 6129498 -156470432 + MER44D DNA MER2_type 415 705 0 633 260 119 102 chrX 6129498 6130017 -156469913 - MLT1F1 LTR MaLR -5 562 10 2239 83 20 10 chrX 6132029 6132353 -156467577 - AluSp SINE Alu 0 313 1 1194 146 30 43 chrX 6133099 6133332 -156466598 - MER30 DNA MER1_type 0 230 1 249 250 17 0 chrX 6133404 6133464 -156466466 + G-rich Low_complexity Low_complexity 3 63 0 181 136 23 23 chrX 6133466 6133510 -156466420 + GA-rich Low_complexity Low_complexity 2 45 0 727 154 19 23 chrX 6133531 6133921 -156466009 + GA-rich Low_complexity Low_complexity 1 388 0 666 335 44 25 chrX 6135390 6135796 -156464134 - LTR16C LTR ERVL -4 487 74 1908 154 7 7 chrX 6135937 6136236 -156463694 - AluSx SINE Alu -13 299 1 697 276 115 57 chrX 6136303 6136868 -156463062 + L1M4 LINE L1 2740 3337 -2809 4946 75 42 31 chrX 6136880 6137587 -156462343 + SVA Other Other 672 1386 0 228 333 31 0 chrX 6137779 6137908 -156462022 + L1M4 LINE L1 3521 3653 -2493 362 281 130 80 chrX 6138110 6138662 -156461268 + L1M4 LINE L1 3875 4454 -1692 1723 181 10 7 chrX 6140638 6140942 -156458988 - AluSx SINE Alu -3 309 5 2706 118 8 98 chrX 6141304 6141496 -156458434 - MER4B LTR ERV1 0 779 571 183 42 0 0 chrX 6141496 6141520 -156458410 + (CATAA)n Simple_repeat Simple_repeat 1 24 0 2706 118 8 98 chrX 6141520 6141995 -156457935 - MER4B LTR ERV1 -208 571 1 1787 185 3 6 chrX 6142004 6142317 -156457613 + AluJo SINE Alu 1 312 0 411 106 24 24 chrX 6142322 6142407 -156457523 + GA-rich Low_complexity Low_complexity 1 85 0 203 88 29 0 chrX 6144043 6144077 -156455853 + (GAAAA)n Simple_repeat Simple_repeat 3 37 0 808 311 65 38 chrX 6144665 6145327 -156454603 + Charlie7 DNA MER1_type 59 738 -1874 370 243 29 70 chrX 6145326 6145598 -156454332 + Charlie7 DNA MER1_type 2349 2609 -3 * 2229 90 6 51 chrX 6146247 6146559 -156453371 + AluSg SINE Alu 1 298 -12 278 291 58 0 chrX 6147214 6147317 -156452613 - Charlie2 DNA MER1_type -2305 477 369 297 321 0 15 chrX 6147420 6147551 -156452379 - Charlie2 DNA MER1_type -2483 299 171 456 309 42 30 chrX 6147712 6147880 -156452050 + MIR SINE MIR 62 231 -31 7768 71 5 9 chrX 6147897 6148973 -156450957 + MER11C LTR ERVK 1 1071 0 934 233 116 33 chrX 6149265 6149647 -156450283 + MLT1D LTR MaLR 88 498 -7 4933 104 3 19 chrX 6149896 6150127 -156449803 + L1MA2 LINE L1 5559 5792 -512 1496 89 181 16 chrX 6150127 6150375 -156449555 + AluSc SINE Alu 1 289 -10 4933 104 3 19 chrX 6150375 6150901 -156449029 + L1MA2 LINE L1 5792 6304 0 2600 149 4 28 chrX 6150907 6151411 -156448519 + L1MA3 LINE L1 5814 6305 0 23 0 0 0 chrX 6151411 6151434 -156448496 + AT_rich Low_complexity Low_complexity 1 23 0 2444 119 119 0 chrX 6151996 6152384 -156447546 - MER57B LTR ERV1 0 434 1 2193 171 72 100 chrX 6152387 6153077 -156446853 - MER50 LTR ERV1 -54 680 10 2125 171 40 33 chrX 6153369 6153819 -156446111 + MER4E LTR ERV1 1 453 -326 559 122 0 0 chrX 6153830 6153912 -156446018 - AluJ/FRAM SINE Alu -15 297 216 1941 116 0 65 chrX 6153912 6154267 -156445663 + MER4E LTR ERV1 448 779 0 21 0 0 0 chrX 6155411 6155432 -156444498 + AT_rich Low_complexity Low_complexity 1 21 0 203 318 15 15 chrX 6156125 6156191 -156443739 + MER5B DNA MER1_type 2 67 -111 304 209 68 25 chrX 6156324 6156487 -156443443 + (CATATA)n Simple_repeat Simple_repeat 3 172 0 569 298 77 25 chrX 6156667 6156752 -156443178 + MIR SINE MIR 12 91 -171 2248 87 30 0 chrX 6156752 6157050 -156442880 - AluSx SINE Alu -5 307 1 569 298 77 25 chrX 6157050 6157199 -156442731 + MIR SINE MIR 91 258 -4 394 309 77 24 chrX 6157900 6158068 -156441862 - MER5B DNA MER1_type -1 177 1 1036 160 12 72 chrX 6158608 6158858 -156441072 + L1MD2 LINE L1 6111 6345 -14 222 37 0 0 chrX 6158871 6158898 -156441032 + (GA)n Simple_repeat Simple_repeat 2 28 0 5789 114 23 23 chrX 6159540 6160610 -156439320 - L1PA13 LINE L1 0 6163 5098 306 0 0 0 chrX 6160627 6160661 -156439269 + (CA)n Simple_repeat Simple_repeat 2 35 0 194 291 175 10 chrX 6160665 6160768 -156439162 - MIR SINE MIR -42 220 101 1551 168 58 21 chrX 6160806 6161097 -156438833 - AluJo SINE Alu -10 302 1 2297 36 79 0 chrX 6161123 6161400 -156438530 + AluY SINE Alu 1 299 -12 2183 93 101 58 chrX 6161919 6162336 -156437594 + LTR49 LTR ERV1 1 435 -160 1322 139 46 8 chrX 6162339 6162577 -156437353 - L1PB4 LINE L1 -391 5765 5519 * 1440 173 13 23 chrX 6162576 6162876 -156437054 + L1PB4 LINE L1 5784 6080 -76 814 154 0 29 chrX 6163370 6163506 -156436424 - FLAM_A SINE Alu -1 132 1 1055 174 38 19 chrX 6164412 6164624 -156435306 + MER20 DNA MER1_type 1 216 -3 21 57 0 0 chrX 6165094 6165129 -156434801 + AT_rich Low_complexity Low_complexity 1 35 0 35 0 0 0 chrX 6165223 6165258 -156434672 + AT_rich Low_complexity Low_complexity 1 35 0 40 21 0 0 chrX 6165369 6165416 -156434514 + AT_rich Low_complexity Low_complexity 1 47 0 273 197 0 0 chrX 6166339 6166400 -156433530 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 291 267 20 0 chrX 6168620 6168766 -156431164 + GA-rich Low_complexity Low_complexity 3 151 0 21 0 0 0 chrX 6169412 6169433 -156430497 + AT_rich Low_complexity Low_complexity 1 21 0 810 188 0 0 chrX 6170874 6171007 -156428923 - FLAM_C SINE Alu 0 133 1 695 180 9 0 chrX 6172302 6172413 -156427517 + FLAM_A SINE Alu 1 112 -30 324 0 0 0 chrX 6172422 6172458 -156427472 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 253 38 164 chrX 6175645 6175795 -156424135 - L2 LINE L2 -69 3244 3077 2306 73 6 49 chrX 6175795 6176122 -156423808 + AluSq SINE Alu 1 313 0 219 253 38 164 chrX 6176122 6176277 -156423653 - L2 LINE L2 -236 3077 3010 593 253 79 0 chrX 6176277 6176467 -156423463 + MER3 DNA MER1_type 1 205 -4 219 253 38 164 chrX 6176467 6176606 -156423324 - L2 LINE L2 -303 3010 2855 202 243 54 63 chrX 6177049 6177160 -156422770 + MIR SINE MIR 85 194 -68 1216 214 81 27 chrX 6177162 6177532 -156422398 - MLT1D LTR MaLR 0 505 116 300 393 15 15 chrX 6177693 6177828 -156422102 + L2 LINE L2 3138 3272 0 2279 126 0 0 chrX 6178254 6178564 -156421366 + AluSq SINE Alu 1 310 -3 380 287 52 9 chrX 6178988 6179103 -156420827 + L2 LINE L2 3189 3308 -5 1830 140 0 92 chrX 6179314 6179457 -156420473 + AluJo SINE Alu 9 105 -207 2302 94 19 0 chrX 6179457 6179764 -156420166 + AluSp SINE Alu 1 313 0 1830 140 0 92 chrX 6179764 6179955 -156419975 + AluJo SINE Alu 105 312 0 445 156 21 10 chrX 6179966 6180062 -156419868 + GA-rich Low_complexity Low_complexity 2 98 0 231 114 0 0 chrX 6180062 6180106 -156419824 + (CAGG)n Simple_repeat Simple_repeat 2 45 0 269 344 46 23 chrX 6181264 6181395 -156418535 + L2 LINE L2 2227 2360 -954 453 294 0 0 chrX 6181549 6181675 -156418255 - MER94 DNA DNA -4 130 5 276 322 46 11 chrX 6182236 6182323 -156417607 + L2 LINE L2 3193 3282 -31 2247 77 11 0 chrX 6182401 6182687 -156417243 - AluSg SINE Alu -21 289 1 239 250 0 0 chrX 6183947 6183995 -156415935 + (TATG)n Simple_repeat Simple_repeat 1 48 0 292 275 0 0 chrX 6184346 6184426 -156415504 - MIR SINE MIR -22 240 161 1231 267 107 36 chrX 6184444 6185522 -156414408 + L1ME3A LINE L1 3854 5031 -1115 2480 125 14 3 chrX 6185522 6185882 -156414048 + THE1B LTR MaLR 1 364 0 1231 267 107 36 chrX 6185882 6186026 -156413904 + L1ME3A LINE L1 5031 5163 -983 1482 117 24 5 chrX 6186033 6186246 -156413684 + AluSq SINE Alu 1 217 -96 270 45 45 0 chrX 6186246 6186290 -156413640 + AluSq SINE Alu 251 296 -7 2221 116 0 0 chrX 6186363 6186655 -156413275 + AluSx SINE Alu 1 292 -20 1214 279 87 19 chrX 6186707 6187328 -156412602 + L1ME3A LINE L1 5326 5988 -182 67 102 0 0 chrX 6187374 6187609 -156412321 + AT_rich Low_complexity Low_complexity 1 235 0 297 127 91 0 chrX 6187609 6187664 -156412266 + HsTC2 DNA Tc2 1291 1350 -548 231 251 105 26 chrX 6187694 6187885 -156412045 + HsTC2 DNA Tc2 1589 1794 -104 31 26 0 0 chrX 6188300 6188338 -156411592 + AT_rich Low_complexity Low_complexity 1 38 0 2558 115 30 2 chrX 6188826 6189226 -156410704 + L1PA7 LINE L1 8 418 -6043 206 118 0 0 chrX 6189226 6189260 -156410670 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 20057 78 19 1 chrX 6189282 6192984 -156406946 + L1PA7 LINE L1 2680 6446 -23 202 231 0 39 chrX 6193679 6193731 -156406199 - L2 LINE L2 -24 3248 3199 545 254 8 0 chrX 6194812 6194930 -156405000 - FLAM_A SINE Alu -13 129 11 788 171 16 144 chrX 6195031 6195288 -156404642 - MER58A DNA MER1_type 0 224 1 2258 57 0 54 chrX 6195957 6196287 -156403643 - AluY SINE Alu 0 314 1 865 151 0 0 chrX 6196293 6196419 -156403511 - FLAM_C SINE Alu -17 126 1 186 43 0 0 chrX 6196596 6196619 -156403311 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2226 92 0 17 chrX 6196621 6196913 -156403017 - AluSx SINE Alu -25 287 1 248 314 202 39 chrX 6198475 6199148 -156400782 - L2 LINE L2 -823 2491 1709 1219 312 71 10 chrX 6200145 6200655 -156399275 - L2 LINE L2 -603 2711 2171 330 195 0 0 chrX 6200994 6201071 -156398859 + (TG)n Simple_repeat Simple_repeat 2 78 0 297 240 20 40 chrX 6201071 6201221 -156398709 + (TA)n Simple_repeat Simple_repeat 1 147 0 2176 83 0 0 chrX 6202206 6202471 -156397459 + AluSx SINE Alu 23 287 -25 239 0 0 31 chrX 6202475 6202507 -156397423 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 1930 134 44 0 chrX 6203224 6203522 -156396408 + AluJo SINE Alu 1 311 -1 2496 64 0 0 chrX 6204033 6204331 -156395599 + AluY SINE Alu 1 298 -13 1868 161 3 3 chrX 6205506 6205811 -156394119 + AluJb SINE Alu 5 309 -3 4156 83 29 9 chrX 6206799 6207356 -156392574 - L1PA11 LINE L1 -1 6173 5606 1618 269 137 61 chrX 6207644 6207729 -156392201 + L2 LINE L2 1959 2036 -1277 2128 124 3 13 chrX 6207729 6208035 -156391895 - AluSx SINE Alu -9 303 1 1618 269 137 61 chrX 6208035 6208931 -156390999 + L2 LINE L2 2036 3014 -299 2239 148 62 31 chrX 6209044 6209561 -156390369 + MLT2A2 LTR ERVL 1 554 0 600 224 7 41 chrX 6209582 6209729 -156390201 + L2 LINE L2 3172 3313 0 1671 201 0 22 chrX 6210494 6210812 -156389118 + AluJo SINE Alu 1 311 -1 438 20 0 0 chrX 6211124 6211140 -156388790 + (CA)n Simple_repeat Simple_repeat 1 67 0 438 20 0 0 chrX 6211140 6211191 -156388739 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 345 76 17 chrX 6211272 6211391 -156388539 - MIR3 SINE MIR -23 185 60 1364 202 0 0 chrX 6211565 6211788 -156388142 - MER58A DNA MER1_type 0 224 2 204 163 0 47 chrX 6211902 6211945 -156387985 - MIR SINE MIR -109 153 113 21 0 0 0 chrX 6214168 6214189 -156385741 + AT_rich Low_complexity Low_complexity 1 21 0 2854 105 21 9 chrX 6264528 6264955 -156334975 + MER1A DNA MER1_type 98 529 0 1798 181 10 7 chrX 6266330 6266640 -156333290 - AluJo SINE Alu -1 311 1 207 0 0 0 chrX 6268523 6268546 -156331384 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 231 128 0 43 chrX 6268810 6268857 -156331073 + L1MB2 LINE L1 6127 6171 0 2563 55 0 13 chrX 6269579 6269888 -156330042 + AluY SINE Alu 1 305 -6 2095 103 7 7 chrX 6271400 6271708 -156328222 - AluSc SINE Alu 0 308 1 222 222 0 0 chrX 6272564 6272618 -156327312 + (CACCAT)n Simple_repeat Simple_repeat 3 56 0 288 281 32 11 chrX 6272725 6272841 -156327089 - MIR SINE MIR -65 143 40 425 333 36 0 chrX 6272886 6273054 -156326876 + MER5B DNA MER1_type 1 174 -4 1692 93 68 0 chrX 6274107 6274343 -156325587 + AluSx SINE Alu 59 310 -2 277 343 57 12 chrX 6274377 6274622 -156325308 + HAL1b LINE L1 233 488 -860 532 292 72 38 chrX 6274888 6275234 -156324696 + HAL1b LINE L1 633 990 -358 237 270 45 11 chrX 6275296 6275385 -156324545 - MER68 LTR ERV1 -470 92 1 1857 155 7 17 chrX 6275505 6275801 -156324129 + AluSx SINE Alu 1 293 -19 2446 117 8 11 chrX 6277295 6277671 -156322259 + THE1C LTR MaLR 1 375 0 456 145 77 0 chrX 6277739 6277824 -156322106 + MER20 DNA MER1_type 21 112 -107 1590 129 132 4 chrX 6277824 6278173 -156321757 + LTR51 LTR ERV1 1 432 -239 * 2709 117 13 41 chrX 6278170 6278397 -156321533 + HSMAR2 DNA Mariner 854 1063 -239 2676 55 0 0 chrX 6278397 6278706 -156321224 + AluY SINE Alu 1 309 -2 2709 117 13 41 chrX 6278706 6278940 -156320990 + HSMAR2 DNA Mariner 1063 1302 0 2099 304 72 29 chrX 6278942 6279927 -156320003 + L1MEc LINE L1 117 1059 -5337 207 0 0 0 chrX 6279927 6279950 -156319980 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2099 304 72 29 chrX 6279950 6280773 -156319157 + L1MEc LINE L1 1059 2002 -4394 924 285 65 34 chrX 6280752 6281520 -156318410 + L1MEc LINE L1 2758 3549 -2666 * 1808 161 0 55 chrX 6281866 6282196 -156317734 - AluJb SINE Alu 0 312 1 1083 145 0 0 chrX 6282309 6282468 -156317462 - AluJb SINE Alu -10 302 144 478 232 9 60 chrX 6282537 6282725 -156317205 + MER5A DNA MER1_type 9 172 -6 220 332 64 72 chrX 6282784 6283239 -156316691 + L2 LINE L2 1544 1994 -1320 47 19 0 0 chrX 6283529 6283583 -156316347 + AT_rich Low_complexity Low_complexity 1 54 0 2489 87 0 0 chrX 6283933 6284243 -156315687 + AluSg SINE Alu 1 310 0 1908 290 69 55 chrX 6284268 6285423 -156314507 + L2 LINE L2 1338 2508 -806 2327 104 0 0 chrX 6286169 6286467 -156313463 + AluSx SINE Alu 1 298 -14 307 344 17 56 chrX 6286660 6286843 -156313087 + MIR SINE MIR 16 189 -68 2311 97 6 3 chrX 6287460 6287771 -156312159 + AluSx SINE Alu 1 312 0 2456 85 0 0 chrX 6287996 6288302 -156311628 + AluSc SINE Alu 1 306 -3 890 215 0 0 chrX 6288597 6288769 -156311161 - FRAM SINE Alu -4 172 1 1000 217 30 0 chrX 6288797 6289000 -156310930 - MER58A DNA MER1_type -11 213 5 1648 161 4 4 chrX 6289755 6290015 -156309915 + AluSx SINE Alu 1 260 -52 286 332 90 10 chrX 6290280 6290475 -156309455 - MIR3 SINE MIR -34 228 20 * 356 318 56 8 chrX 6290471 6290597 -156309333 + L2 LINE L2 3182 3313 0 801 148 24 0 chrX 6291574 6291743 -156308187 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 2431 96 3 0 chrX 6292675 6292987 -156306943 - AluSq SINE Alu 0 313 1 229 148 49 37 chrX 6293410 6293491 -156306439 + (TA)n Simple_repeat Simple_repeat 1 82 0 2169 129 0 3 chrX 6293497 6293807 -156306123 + AluSx SINE Alu 1 309 -3 431 328 33 0 chrX 6294314 6294497 -156305433 + MER5A DNA MER1_type 1 189 0 2459 97 0 0 chrX 6294502 6294812 -156305118 + AluY SINE Alu 1 310 -1 24 32 0 0 chrX 6295052 6295083 -156304847 + AT_rich Low_complexity Low_complexity 1 31 0 2594 55 0 6 chrX 6295249 6295560 -156304370 + AluY SINE Alu 1 309 -2 24 0 0 0 chrX 6295895 6295919 -156304011 + AT_rich Low_complexity Low_complexity 1 24 0 3200 161 13 28 chrX 6296551 6297200 -156302730 + MER41B LTR ERV1 1 467 -11 1711 192 31 7 chrX 6297638 6297929 -156302001 + AluJo SINE Alu 1 298 -14 2021 131 3 32 chrX 6298819 6299157 -156300773 + AluSx SINE Alu 1 312 0 226 372 75 21 chrX 6299661 6299900 -156300030 - L2 LINE L2 -819 2495 2244 218 353 17 26 chrX 6299940 6300056 -156299874 - L2 LINE L2 0 3313 3199 181 338 90 54 chrX 6300835 6301057 -156298873 + MIR SINE MIR 20 249 -13 1809 193 41 131 chrX 6302250 6302912 -156297018 + L1MC4 LINE L1 7299 7900 -142 256 219 24 0 chrX 6302916 6302998 -156296932 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 213 219 0 0 chrX 6303032 6303073 -156296857 + A-rich Low_complexity Low_complexity 2 42 0 978 188 45 6 chrX 6303089 6303265 -156296665 + MER58A DNA MER1_type 4 186 -38 37 52 0 0 chrX 6303352 6303410 -156296520 + AT_rich Low_complexity Low_complexity 1 58 0 839 203 91 0 chrX 6306173 6306360 -156293570 + MER3 DNA MER1_type 1 204 -5 284 230 40 0 chrX 6306818 6306892 -156293038 + LTR33A LTR ERVL 444 520 -3 1888 222 26 38 chrX 6310691 6311217 -156288713 + L1MB8 LINE L1 5659 6178 0 188 253 46 58 chrX 6311438 6311525 -156288405 - MER5A DNA MER1_type -69 120 35 * 212 195 24 0 chrX 6311503 6311544 -156288386 + MER5A DNA MER1_type 145 186 -3 4823 118 63 34 chrX 6312063 6312820 -156287110 + MER4E LTR ERV1 1 779 0 5905 102 26 21 chrX 6312897 6313754 -156286176 + MER4D LTR ERV1 12 872 0 1522 118 45 115 chrX 6314301 6314615 -156285315 - AluSq SINE Alu -21 292 1 1030 70 7 42 chrX 6314617 6314759 -156285171 - AluSq/x SINE Alu -169 143 7 911 163 0 7 chrX 6314859 6315006 -156284924 - AluJb SINE Alu -23 289 144 2053 146 0 3 chrX 6315326 6315627 -156284303 + AluSx SINE Alu 6 305 -7 838 212 98 20 chrX 6315765 6315968 -156283962 - MER20 DNA MER1_type 0 219 1 2196 113 10 0 chrX 6316850 6317151 -156282779 + AluSq SINE Alu 1 304 -9 287 316 0 43 chrX 6317982 6318099 -156281831 - MIR SINE MIR -67 141 30 193 273 156 26 chrX 6318228 6318305 -156281625 + L2 LINE L2 3204 3290 -23 610 191 84 0 chrX 6318499 6318630 -156281300 + MER69 DNA AcHobo 6 147 -1079 1689 136 0 12 chrX 6319150 6319400 -156280530 + AluSq SINE Alu 44 290 -23 1581 168 9 58 chrX 6320607 6320934 -156278996 - AluJo SINE Alu -1 311 1 180 0 0 0 chrX 6321517 6321537 -156278393 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2075 136 0 0 chrX 6321540 6321827 -156278103 - AluSx SINE Alu -25 287 1 335 185 123 0 chrX 6322136 6322217 -156277713 + L2 LINE L2 2450 2540 -774 * 493 316 91 38 chrX 6322196 6322538 -156277392 + L2 LINE L2 2953 3312 -1 954 219 61 114 chrX 6323429 6323665 -156276265 + MER58B DNA MER1_type 1 213 -2207 3767 128 0 26 chrX 6323665 6324205 -156275725 - MER1A DNA MER1_type -1 526 1 954 219 61 114 chrX 6324205 6324328 -156275602 + MER58B DNA MER1_type 213 341 0 198 306 24 24 chrX 6324328 6324413 -156275517 + L2 LINE L2 3187 3271 -1 290 293 158 8 chrX 6324940 6325073 -156274857 + MIR SINE MIR 8 160 -102 748 289 94 61 chrX 6325552 6326075 -156273855 + MER77 LTR ERV1 55 594 -11 2366 87 10 0 chrX 6326139 6326438 -156273492 - AluSg SINE Alu -8 302 1 431 284 49 49 chrX 6326615 6326798 -156273132 - LTR16C LTR ERVL -229 262 80 1593 152 3 91 chrX 6327477 6327618 -156272312 + AluJo SINE Alu 1 102 -210 2266 88 10 10 chrX 6327618 6327915 -156272015 + AluSg SINE Alu 1 297 -13 1593 152 3 91 chrX 6327915 6328082 -156271848 + AluJo SINE Alu 102 282 -30 866 123 19 9 chrX 6328082 6328302 -156271628 + CT-rich Low_complexity Low_complexity 1 222 0 2099 141 13 0 chrX 6328302 6328600 -156271330 - AluSx SINE Alu -10 302 1 868 135 0 30 chrX 6329164 6329297 -156270633 + FLAM_C SINE Alu 1 129 -4 1387 158 4 4 chrX 6329640 6329868 -156270062 - MLT1B LTR MaLR -4 386 159 2265 140 17 13 chrX 6329869 6330258 -156269672 - MLT1B LTR MaLR 0 396 1 1679 194 3 50 chrX 6330859 6330895 -156269035 - MER58B DNA MER1_type -2094 326 290 746 257 41 0 chrX 6330895 6331066 -156268864 + MER45A DNA AcHobo 1 178 0 1679 194 3 50 chrX 6331066 6331198 -156268732 - MER58B DNA MER1_type -2130 290 153 1890 171 138 31 chrX 6331198 6331411 -156268519 + MLT1C LTR MaLR 1 190 -277 2152 91 35 7 chrX 6331411 6331726 -156268204 + AluSq SINE Alu 1 323 0 1890 171 138 31 chrX 6331726 6331930 -156268000 + MLT1C LTR MaLR 190 465 -2 1679 194 3 50 chrX 6331930 6332101 -156267829 - MER58B DNA MER1_type -2267 153 2 2914 79 94 0 chrX 6332469 6332861 -156267069 + L1PA10 LINE L1 5728 6156 -12 2415 60 0 10 chrX 6332862 6333164 -156266766 - AluY SINE Alu -12 299 1 186 43 0 0 chrX 6333255 6333278 -156266652 + (CA)n Simple_repeat Simple_repeat 1 23 0 752 296 60 3 chrX 6333683 6334000 -156265930 + L1MC4 LINE L1 6814 7148 -894 1547 178 32 41 chrX 6334591 6334906 -156265024 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 6335954 6335977 -156263953 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 655 233 0 0 chrX 6336006 6336126 -156263804 - FLAM_A SINE Alu -17 125 6 213 259 0 52 chrX 6336528 6336586 -156263344 + MIR SINE MIR 17 71 -191 2912 87 3 0 chrX 6336708 6337077 -156262853 - L1PB1 LINE L1 0 6151 5782 395 115 14 58 chrX 6337077 6337216 -156262714 + (TA)n Simple_repeat Simple_repeat 1 133 0 554 158 0 10 chrX 6337236 6337357 -156262573 - L1PB1 LINE L1 -361 5790 5699 1366 225 70 0 chrX 6337865 6338181 -156261749 + L1MC2 LINE L1 5949 6286 -58 477 307 135 58 chrX 6339299 6339863 -156260067 + L2 LINE L2 2200 2806 -508 263 112 17 69 chrX 6340259 6340375 -156259555 + (TA)n Simple_repeat Simple_repeat 1 110 0 1622 139 64 0 chrX 6340468 6340748 -156259182 - L1MA8 LINE L1 -7 6284 5987 351 121 0 0 chrX 6340817 6340875 -156259055 + (CA)n Simple_repeat Simple_repeat 2 59 0 1758 81 36 0 chrX 6343165 6343387 -156256543 + MER30 DNA MER1_type 1 230 0 22 0 0 0 chrX 6343575 6343597 -156256333 + AT_rich Low_complexity Low_complexity 1 22 0 3198 77 12 14 chrX 6344361 6344776 -156255154 - L1PA10 LINE L1 0 6168 5755 565 259 14 66 chrX 6345681 6345800 -156254130 + MER3 DNA MER1_type 4 109 -100 1051 180 22 59 chrX 6345800 6346022 -156253908 - MER20 DNA MER1_type -4 215 2 565 259 14 66 chrX 6346022 6346114 -156253816 + MER3 DNA MER1_type 109 204 -5 984 90 8 8 chrX 6346136 6346270 -156253660 + L1MA1 LINE L1 6167 6300 -2 21 0 0 0 chrX 6347118 6347139 -156252791 + AT_rich Low_complexity Low_complexity 1 21 0 259 289 112 20 chrX 6347210 6347362 -156252568 + MIR SINE MIR 20 185 -77 26 0 0 0 chrX 6347902 6347928 -156252002 + AT_rich Low_complexity Low_complexity 1 26 0 642 179 24 0 chrX 6347947 6348070 -156251860 + L1MB3 LINE L1 5869 5994 -189 1269 120 6 0 chrX 6348260 6348443 -156251487 + L1MB2 LINE L1 5941 6124 -47 298 164 18 27 chrX 6348449 6348537 -156251393 - MER5A DNA MER1_type -99 90 4 2203 85 7 14 chrX 6348574 6348857 -156251073 + AluSx SINE Alu 25 305 -7 453 165 0 35 chrX 6348879 6348964 -156250966 - AluJ/FRAM SINE Alu -4 308 227 1267 226 49 84 chrX 6349451 6350000 -156249930 + MER34 LTR ERV1 4 533 -9 249 33 0 0 chrX 6351026 6351056 -156248874 + (CA)n Simple_repeat Simple_repeat 1 30 0 450 281 51 34 chrX 6351109 6351287 -156248643 - MIR SINE MIR -17 245 65 701 233 0 6 chrX 6351583 6351746 -156248184 + MER5A DNA MER1_type 26 187 -2 25 31 0 0 chrX 6351969 6352001 -156247929 + AT_rich Low_complexity Low_complexity 1 32 0 996 123 11 11 chrX 6354152 6354331 -156245599 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 338 184 13 0 chrX 6354331 6354407 -156245523 + GA-rich Low_complexity Low_complexity 3 79 0 2037 120 3 7 chrX 6355342 6355634 -156244296 + AluSx SINE Alu 1 291 -21 23 0 0 0 chrX 6355634 6355657 -156244273 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chrX 6356097 6356130 -156243800 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 324 0 0 0 chrX 6356265 6356301 -156243629 + (CA)n Simple_repeat Simple_repeat 2 37 0 202 262 0 33 chrX 6357892 6357953 -156241977 + T-rich Low_complexity Low_complexity 5 63 0 1499 179 45 4 chrX 6358086 6358206 -156241724 + AluJb SINE Alu 1 115 -197 207 0 0 0 chrX 6358206 6358229 -156241701 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1499 179 45 4 chrX 6358229 6358376 -156241554 + AluJb SINE Alu 115 279 -33 445 143 0 0 chrX 6358376 6358439 -156241491 - LTR7 LTR ERV1 0 450 388 222 37 0 0 chrX 6358458 6358485 -156241445 + (GA)n Simple_repeat Simple_repeat 2 28 0 2181 80 0 0 chrX 6359747 6360009 -156239921 - AluSg SINE Alu -14 296 35 729 196 75 121 chrX 6360023 6360171 -156239759 - LTR37A LTR ERV1 -22 404 251 417 39 0 0 chrX 6360171 6360222 -156239708 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 729 196 75 121 chrX 6360222 6360420 -156239510 - LTR37A LTR ERV1 -175 251 74 1470 235 37 3 chrX 6360751 6361079 -156238851 + MER58B DNA MER1_type 2 340 -1 332 254 37 15 chrX 6361122 6361233 -156238697 + LTR48B LTR ERV1 1 108 -514 1010 217 60 63 chrX 6361260 6361658 -156238272 + MER39 LTR ERV1 113 584 -1 260 369 10 10 chrX 6361866 6361969 -156237961 + MIR3 SINE MIR 91 193 -15 1989 115 49 0 chrX 6362405 6362693 -156237237 - AluSc SINE Alu -7 302 1 201 290 72 29 chrX 6362787 6362856 -156237074 + L2 LINE L2 3192 3263 -9 2149 127 3 0 chrX 6363058 6363358 -156236572 + AluSq SINE Alu 1 301 -12 2057 126 0 0 chrX 6363701 6363987 -156235943 + AluSx SINE Alu 1 286 -26 180 0 0 0 chrX 6364371 6364391 -156235539 + (A)n Simple_repeat Simple_repeat 1 20 0 898 273 87 72 chrX 6364696 6365154 -156234776 - MLT1J LTR MaLR -45 466 2 189 256 0 0 chrX 6365201 6365244 -156234686 + L2 LINE L2 3210 3252 -20 1204 199 19 5 chrX 6365331 6365547 -156234383 - MER20 DNA MER1_type 0 219 1 241 216 20 0 chrX 6365664 6365715 -156234215 - MER65C LTR ERV1 -3 458 407 1555 113 0 5 chrX 6365715 6365937 -156233993 + AluSg/x SINE Alu 83 303 -7 496 282 77 29 chrX 6365997 6366270 -156233660 - L2 LINE L2 -529 2785 2500 497 255 62 0 chrX 6368191 6368336 -156231594 + L1MD2 LINE L1 6194 6347 -12 21 0 0 0 chrX 6368476 6368497 -156231433 + AT_rich Low_complexity Low_complexity 1 21 0 2091 141 160 19 chrX 6368838 6369213 -156230717 - MSTA LTR MaLR 0 428 1 255 398 0 0 chrX 6369254 6369372 -156230558 + MIR SINE MIR 84 201 -61 2305 101 3 3 chrX 6369398 6369705 -156230225 + AluSq SINE Alu 1 307 -6 1556 151 107 46 chrX 6370048 6370439 -156229491 - L1MB7 LINE L1 -8 6176 5762 224 338 78 7 chrX 6372089 6372243 -156227687 - MIR SINE MIR -29 233 69 2886 91 11 3 chrX 6372584 6372945 -156226985 + THE1B LTR MaLR 1 364 0 1776 117 40 7 chrX 6375131 6375404 -156224526 + L1MC1 LINE L1 6051 6332 -1 243 325 36 73 chrX 6375636 6375938 -156223992 + L2 LINE L2 3023 3313 0 23 54 0 0 chrX 6376167 6376204 -156223726 + AT_rich Low_complexity Low_complexity 1 37 0 1154 187 0 0 chrX 6376250 6376448 -156223482 - MER2 DNA MER2_type -107 238 41 2135 129 0 0 chrX 6376615 6376918 -156223012 + AluSg SINE Alu 1 303 -7 322 153 65 48 chrX 6376954 6376970 -156222960 + L1M1 LINE L1 5751 5765 -535 7685 43 4 6 chrX 6376970 6377949 -156221981 + L1PA7 LINE L1 5177 6154 0 322 153 65 48 chrX 6377949 6378025 -156221905 + L1M1 LINE L1 5765 5847 -453 691 147 0 0 chrX 6378143 6378245 -156221685 - AluJb SINE Alu -6 306 205 2460 74 0 0 chrX 6378603 6378901 -156221029 - AluY SINE Alu -13 298 1 193 314 0 0 chrX 6379966 6380017 -156219913 - MIR3 SINE MIR -49 159 109 1839 199 88 28 chrX 6380690 6381121 -156218809 - MLT1C LTR MaLR -4 463 7 527 314 64 6 chrX 6382038 6382210 -156217720 + MER5A DNA MER1_type 1 182 -7 2560 77 0 0 chrX 6382273 6382584 -156217346 - AluSx SINE Alu -1 311 1 1597 153 7 49 chrX 6383942 6384230 -156215700 - AluJo SINE Alu -16 296 21 625 205 27 0 chrX 6384445 6384557 -156215373 - FLAM_A SINE Alu -17 125 11 236 281 0 0 chrX 6385390 6385454 -156214476 + L2 LINE L2 3186 3249 -23 257 67 0 44 chrX 6385530 6385575 -156214355 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 702 182 28 45 chrX 6385616 6385792 -156214138 + MER20 DNA MER1_type 47 219 0 242 194 48 0 chrX 6386306 6386368 -156213562 + GA-rich Low_complexity Low_complexity 2 66 0 891 126 0 44 chrX 6386400 6386535 -156213395 + FLAM_C SINE Alu 1 129 -4 1253 166 9 14 chrX 6386539 6386762 -156213168 + AluJo SINE Alu 87 308 -4 812 190 6 13 chrX 6386874 6387032 -156212898 - FRAM SINE Alu -19 157 1 2003 123 0 0 chrX 6388084 6388352 -156211578 - AluSx SINE Alu -44 268 1 1371 189 9 84 chrX 6389291 6389613 -156210317 + AluJo SINE Alu 1 298 -14 304 288 93 0 chrX 6390026 6390144 -156209786 + MIR SINE MIR 80 208 -54 5093 81 59 4 chrX 6390885 6391246 -156208684 - L1PB1 LINE L1 -7 6144 5804 321 26 0 0 chrX 6391246 6391284 -156208646 + (CA)n Simple_repeat Simple_repeat 2 39 0 5093 81 59 4 chrX 6391284 6391600 -156208330 - L1PB1 LINE L1 -347 5804 5430 2353 164 12 16 chrX 6391600 6392175 -156207755 + L1PB1 LINE L1 4860 5434 -717 794 268 65 58 chrX 6392949 6393349 -156206581 - LTR16A1 LTR ERVL 0 457 55 972 137 0 0 chrX 6394182 6394438 -156205492 + (TA)n Simple_repeat Simple_repeat 1 256 0 1345 310 107 34 chrX 6395707 6396391 -156203539 + MER45C DNA AcHobo 4 737 -216 1214 208 44 14 chrX 6396486 6396779 -156203151 + MER45B DNA AcHobo 739 1040 0 337 241 12 0 chrX 6396925 6397008 -156202922 + MIR SINE MIR 153 236 -26 2250 89 23 0 chrX 6398063 6398365 -156201565 - AluSx SINE Alu -3 309 1 243 0 0 0 chrX 6398384 6398411 -156201519 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chrX 6400619 6400640 -156199290 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chrX 6401453 6401473 -156198457 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 307 284 189 0 chrX 6402337 6402432 -156197498 + MER45 DNA AcHobo 1 113 -1468 1577 146 75 14 chrX 6402436 6402716 -156197214 + MER1B DNA MER1_type 42 338 -1 2412 61 7 0 chrX 6403020 6403313 -156196617 - AluY SINE Alu -16 295 1 21 36 0 0 chrX 6403660 6403688 -156196242 + AT_rich Low_complexity Low_complexity 1 28 0 225 269 0 0 chrX 6404313 6404380 -156195550 + T-rich Low_complexity Low_complexity 1 67 0 420 301 19 19 chrX 6404387 6404543 -156195387 - MER5A DNA MER1_type -25 164 9 1821 169 0 22 chrX 6404571 6404890 -156195040 + AluJb SINE Alu 1 312 0 1749 68 119 12 chrX 6406247 6406534 -156193396 + AluSc SINE Alu 1 314 0 886 185 90 19 chrX 6408484 6408518 -156191412 + AluJo SINE Alu 87 117 -195 207 0 0 0 chrX 6408518 6408541 -156191389 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 886 185 90 19 chrX 6408541 6408717 -156191213 + AluJo SINE Alu 117 312 0 473 31 0 16 chrX 6409355 6409419 -156190511 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 25 31 0 0 chrX 6409501 6409533 -156190397 + AT_rich Low_complexity Low_complexity 1 32 0 380 270 67 105 chrX 6409570 6409725 -156190205 - L1MEc LINE L1 -4439 2126 1960 2503 68 3 3 chrX 6409725 6410033 -156189897 - AluSp SINE Alu -5 308 1 380 270 67 105 chrX 6410033 6410162 -156189768 - L1MEc LINE L1 -4605 1960 1828 428 289 50 39 chrX 6411021 6411201 -156188729 + MIR SINE MIR 17 198 -64 2014 102 3 94 chrX 6412290 6412654 -156187276 + AluSx SINE Alu 1 312 0 327 359 5 10 chrX 6412674 6412872 -156187058 + L1ME3A LINE L1 5150 5346 -800 759 182 15 30 chrX 6413068 6413200 -156186730 - FLAM_A SINE Alu -3 130 1 459 334 36 17 chrX 6413210 6413512 -156186418 + L1ME3A LINE L1 5525 5832 -338 2082 112 14 0 chrX 6413654 6413948 -156185982 + AluSx SINE Alu 1 298 -14 180 0 0 0 chrX 6414351 6414371 -156185559 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1048 154 0 17 chrX 6414675 6414850 -156185080 - L1PB1 LINE L1 -2 6149 5978 3322 104 17 0 chrX 6414853 6415313 -156184617 + L1PB1 LINE L1 5499 5966 -185 216 333 21 21 chrX 6415389 6415485 -156184445 - L2 LINE L2 -1065 2249 2154 369 167 0 0 chrX 6415883 6415961 -156183969 + GA-rich Low_complexity Low_complexity 1 78 0 1494 12 0 0 chrX 6416056 6416217 -156183713 - L1PA2 LINE L1 0 6155 5995 1905 147 24 3 chrX 6416279 6416596 -156183334 - AluSx SINE Alu 0 324 2 207 0 0 0 chrX 6416691 6416714 -156183216 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2409 61 0 29 chrX 6417036 6417347 -156182583 - AluY SINE Alu -9 302 1 418 266 55 0 chrX 6417394 6417522 -156182408 - MER5B DNA MER1_type -40 138 4 818 221 42 32 chrX 6417602 6417819 -156182111 - MER20 DNA MER1_type 0 219 1 280 169 26 0 chrX 6417917 6417994 -156181936 + (CA)n Simple_repeat Simple_repeat 2 80 0 270 303 83 18 chrX 6418489 6418598 -156181332 - L2 LINE L2 0 3313 3198 1891 267 56 14 chrX 6419150 6419720 -156180210 - HERVL40 LTR ERVL -2411 3119 2526 599 286 84 64 chrX 6419721 6420175 -156179755 - HERVL40 LTR ERVL -3918 1612 1150 682 261 22 27 chrX 6420270 6420492 -156179438 - HsTC2 DNA Tc2 -1177 721 501 448 294 68 28 chrX 6420500 6420677 -156179253 - HsTC2 DNA Tc2 -1684 214 31 1384 174 50 43 chrX 6420690 6421005 -156178925 + AluJb SINE Alu 1 317 0 735 207 0 22 chrX 6422166 6422301 -156177629 - FLAM_C SINE Alu 0 133 2 189 317 174 6 chrX 6422451 6422612 -156177318 + L2 LINE L2 2851 3038 -275 23 54 0 0 chrX 6422856 6422893 -156177037 + AT_rich Low_complexity Low_complexity 1 37 0 359 247 141 107 chrX 6422927 6423190 -156176740 + L2 LINE L2 3042 3313 0 225 364 56 48 chrX 6423400 6423631 -156176299 + L2 LINE L2 2892 3124 -189 231 278 113 15 chrX 6423912 6424045 -156175885 + LTR33A LTR ERVL 222 367 -156 234 359 13 0 chrX 6424428 6424506 -156175424 + L2 LINE L2 3193 3271 -1 673 277 75 65 chrX 6425318 6425795 -156174135 + REP3 LTR ERV 48 529 -33 3807 119 2 0 chrX 6426045 6426574 -156173356 - LTR26B LTR ERV1 0 531 2 2774 152 18 7 chrX 6427515 6427955 -156171975 + MER65A LTR ERV1 1 445 0 1167 142 40 44 chrX 6428268 6428493 -156171437 + L1MB7 LINE L1 5945 6168 -16 772 361 53 17 chrX 6428555 6429026 -156170904 - L3 LINE CR1 -41 1536 1049 784 205 66 0 chrX 6429118 6429284 -156170646 + MER53 DNA DNA 1 177 -12 3356 205 47 7 chrX 6429291 6429998 -156169932 - L1MC1 LINE L1 -10 6323 5589 213 39 0 0 chrX 6430119 6430145 -156169785 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2349 100 7 0 chrX 6431641 6431950 -156167980 - AluSq SINE Alu -2 311 1 1407 196 68 18 chrX 6432339 6432676 -156167254 + L1MA4 LINE L1 5941 6294 -6 219 325 95 16 chrX 6432695 6432821 -156167109 - MIR SINE MIR -2 260 125 936 227 19 0 chrX 6433661 6433868 -156166062 + L1MC1 LINE L1 6113 6323 -10 274 231 22 44 chrX 6433905 6433996 -156165934 + L1MC4 LINE L1 6615 6703 -1339 204 250 0 0 chrX 6433996 6434060 -156165870 + (CA)n Simple_repeat Simple_repeat 2 65 0 225 235 74 0 chrX 6434775 6434856 -156165074 + PABL_A LTR ERV1 422 508 -152 3848 117 0 8 chrX 6435170 6435685 -156164245 - MER9 LTR ERVK 0 511 1 2572 210 12 58 chrX 6436723 6437342 -156162588 - LTR9 LTR ERV1 -31 581 4 1221 140 31 0 chrX 6437345 6437538 -156162392 - HUERS-P3 LTR ERV1 -1 8918 8720 932 153 17 6 chrX 6437692 6437868 -156162062 - HUERS-P3b LTR ERV1 -2450 2565 2388 13590 159 35 51 chrX 6437876 6439674 -156160256 - HUERS-P3b LTR ERV1 -343 6653 5124 460 16 0 31 chrX 6439674 6439738 -156160192 - L1PA2 LINE L1 0 6155 6094 13590 159 35 51 chrX 6439738 6441493 -156158437 - HUERS-P3b LTR ERV1 -1872 5124 3342 6947 111 11 32 chrX 6441506 6447690 -156152240 + L1PA8 LINE L1 12 6162 -10 234 188 0 0 chrX 6447695 6447743 -156152187 + A-rich Low_complexity Low_complexity 1 48 0 438 286 83 62 chrX 6448830 6449495 -156150435 + L1M4 LINE L1 2248 2926 -3220 180 0 0 0 chrX 6449661 6449681 -156150249 + (TG)n Simple_repeat Simple_repeat 1 20 0 260 279 13 0 chrX 6449739 6449818 -156150112 + L1MC5 LINE L1 7809 7888 -73 632 332 99 42 chrX 6449939 6450364 -156149566 - L1MC4a LINE L1 -1839 5969 5521 423 0 0 0 chrX 6450769 6450816 -156149114 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2276 94 108 6 chrX 6450818 6451179 -156148751 - LTR7 LTR ERV1 -42 408 11 351 67 0 0 chrX 6451208 6451253 -156148677 + L1P5 LINE L1 5575 5619 -532 185 277 0 92 chrX 6451426 6451491 -156148439 + MIR SINE MIR 20 78 -184 342 173 376 8 chrX 6451501 6451634 -156148296 + MER5A DNA MER1_type 8 189 0 459 269 64 19 chrX 6451637 6451793 -156148137 + MIR SINE MIR 84 246 -16 1255 63 32 53 chrX 6453222 6453411 -156146519 + L1PB1 LINE L1 5607 5791 -360 2659 106 3 8 chrX 6453473 6453842 -156146088 + L1PB1 LINE L1 5782 6148 -3 30 27 0 0 chrX 6453842 6453879 -156146051 + AT_rich Low_complexity Low_complexity 1 37 0 677 140 123 9 chrX 6454334 6454448 -156145482 + AluJb SINE Alu 2 127 -185 27 0 0 0 chrX 6454453 6454480 -156145450 + AT_rich Low_complexity Low_complexity 1 27 0 34 65 0 0 chrX 6455573 6455635 -156144295 + AT_rich Low_complexity Low_complexity 1 62 0 1121 191 0 0 chrX 6455757 6456068 -156143862 + AluJo SINE Alu 95 405 0 1253 148 5 24 chrX 6456083 6456293 -156143637 + AluJo SINE Alu 1 206 -106 767 168 0 0 chrX 6456573 6456692 -156143238 - FLAM_C SINE Alu -20 123 5 1047 261 24 62 chrX 6456745 6457212 -156142718 + MLT1D LTR MaLR 3 451 -54 1770 169 33 8 chrX 6457242 6457610 -156142320 - L1MA8 LINE L1 -6 6285 5909 1537 210 14 0 chrX 6457610 6457905 -156142025 + AluJo SINE Alu 1 299 -13 2327 88 0 3 chrX 6459156 6459450 -156140480 - AluSx SINE Alu -18 294 2 213 364 116 24 chrX 6461013 6461263 -156138667 - L2 LINE L2 -649 2665 2393 753 109 78 8 chrX 6461922 6462050 -156137880 - MER85 DNA T2_type 0 139 3 665 260 11 6 chrX 6462796 6462977 -156136953 + L2 LINE L2 669 850 -2464 559 268 44 16 chrX 6463053 6463236 -156136694 - MIR SINE MIR -74 188 1 448 284 185 30 chrX 6463259 6463621 -156136309 + L2 LINE L2 872 1289 -2025 846 183 0 0 chrX 6463755 6463924 -156136006 + CT-rich Low_complexity Low_complexity 3 171 0 402 108 0 0 chrX 6463937 6464011 -156135919 + (CTG)n Simple_repeat Simple_repeat 2 75 0 1423 107 19 0 chrX 6466258 6466473 -156133457 + L1PA15 LINE L1 5941 6159 -6 318 262 148 96 chrX 6467938 6468599 -156131331 + L1M2 LINE L1 718 1250 -5599 288 252 0 39 chrX 6469355 6469458 -156130472 + C-rich Low_complexity Low_complexity 3 101 0 306 274 148 100 chrX 6469468 6470048 -156129882 + L1M2 LINE L1 718 1325 -5524 2206 111 0 3 chrX 6470476 6470783 -156129147 - AluSx SINE Alu -2 310 5 1756 137 22 4 chrX 6471378 6471693 -156128237 + AluSx SINE Alu 1 320 0 1750 189 58 11 chrX 6471959 6472339 -156127591 - MER77 LTR ERV1 -206 399 2 243 0 0 0 chrX 6472375 6472402 -156127528 + (TC)n Simple_repeat Simple_repeat 2 28 0 854 137 8 8 chrX 6473503 6473634 -156126296 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chrX 6474633 6474654 -156125276 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chrX 6474853 6474883 -156125047 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 209 347 0 14 chrX 6474885 6474957 -156124973 - L2 LINE L2 -2 3311 3241 809 192 77 24 chrX 6475398 6475606 -156124324 + MER20 DNA MER1_type 1 219 0 303 358 133 22 chrX 6475886 6476336 -156123594 - L2 LINE L2 -640 2674 2175 188 189 54 0 chrX 6476363 6476400 -156123530 - L2 LINE L2 -10 3303 3265 241 320 18 0 chrX 6476411 6476525 -156123405 - MIR SINE MIR -45 163 44 249 194 26 58 chrX 6477416 6477571 -156122359 + (TTA)n Simple_repeat Simple_repeat 2 151 0 242 273 40 30 chrX 6477644 6477743 -156122187 - Charlie2 DNA MER1_type -2762 100 1 620 311 68 0 chrX 6477890 6478125 -156121805 - MIR SINE MIR -10 252 2 438 20 0 0 chrX 6478653 6478704 -156121226 + (CA)n Simple_repeat Simple_repeat 2 52 0 2905 216 171 4 chrX 6478736 6479649 -156120281 - Tigger6a DNA MER2_type -17 1066 2 371 273 117 0 chrX 6479704 6479832 -156120098 - MIR SINE MIR -107 155 13 2182 113 0 0 chrX 6479845 6480138 -156119792 - AluSx SINE Alu -19 293 1 233 229 0 0 chrX 6480469 6480517 -156119413 - L2 LINE L2 -9 3304 3257 1491 186 34 8 chrX 6480626 6481037 -156118893 - LTR19A LTR ERV1 -8 478 1 387 138 0 25 chrX 6481260 6481340 -156118590 + MER53 DNA DNA 100 177 -12 * 462 121 0 44 chrX 6481269 6481360 -156118570 - MER53 DNA DNA -98 91 5 795 230 14 23 chrX 6481766 6481983 -156117947 - MER58A DNA MER1_type -6 218 4 227 351 47 12 chrX 6482253 6482424 -156117506 + HAL1 LINE L1 17 193 -2314 2637 227 84 52 chrX 6482490 6483576 -156116354 + Charlie2a DNA MER1_type 427 1635 -1227 1350 182 60 43 chrX 6483576 6483878 -156116052 - AluJo SINE Alu -5 307 1 2637 227 84 52 chrX 6483878 6484201 -156115729 + Charlie2a DNA MER1_type 1635 1946 -916 821 186 62 38 chrX 6484210 6484420 -156115510 + MER20 DNA MER1_type 2 216 -3 1591 237 21 42 chrX 6484464 6485114 -156114816 + Charlie2a DNA MER1_type 2226 2862 0 489 76 0 0 chrX 6485683 6485749 -156114181 + (CA)n Simple_repeat Simple_repeat 1 66 0 22 35 0 0 chrX 6485926 6485955 -156113975 + AT_rich Low_complexity Low_complexity 1 29 0 423 56 0 0 chrX 6487360 6487414 -156112516 + (CAT)n Simple_repeat Simple_repeat 3 56 0 369 0 0 0 chrX 6488076 6488117 -156111813 + (CA)n Simple_repeat Simple_repeat 1 41 0 323 78 20 0 chrX 6488130 6488181 -156111749 + (TA)n Simple_repeat Simple_repeat 1 52 0 842 129 7 0 chrX 6489721 6489861 -156110069 + (CAT)n Simple_repeat Simple_repeat 3 143 0 1991 130 0 3 chrX 6491628 6491940 -156107990 - AluSx SINE Alu 0 311 1 337 265 24 0 chrX 6491975 6492058 -156107872 - MER81 DNA DNA -4 110 26 654 294 94 43 chrX 6492070 6492539 -156107391 - L1MC5 LINE L1 -208 7753 7261 343 352 15 15 chrX 6492767 6492966 -156106964 - L1MC5 LINE L1 -791 7170 6972 668 278 53 17 chrX 6494318 6494617 -156105313 + L1ME4a LINE L1 5523 5832 -289 312 221 21 62 chrX 6494693 6494838 -156105092 + L1ME4a LINE L1 5968 6106 -15 789 291 17 60 chrX 6494869 6495004 -156104926 + L1ME3A LINE L1 5573 5712 -458 651 189 16 0 chrX 6495004 6495131 -156104799 + L1MB5 LINE L1 6035 6163 -11 789 291 17 60 chrX 6495131 6495567 -156104363 + L1ME3A LINE L1 5712 6113 -57 2262 88 0 0 chrX 6496551 6496836 -156103094 + AluSq SINE Alu 1 285 -28 213 39 0 0 chrX 6496836 6496862 -156103068 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 309 135 0 0 chrX 6497103 6497155 -156102775 + (TG)n Simple_repeat Simple_repeat 2 53 0 305 244 116 23 chrX 6498526 6498612 -156101318 - L2 LINE L2 -31 3241 3148 2461 79 3 0 chrX 6500165 6500468 -156099462 + AluSx SINE Alu 1 304 -8 432 128 0 0 chrX 6501034 6501112 -156098818 + (CA)n Simple_repeat Simple_repeat 1 78 0 901 155 37 5 chrX 6501366 6501553 -156098377 + L1MB4 LINE L1 5946 6138 -42 1275 279 83 2 chrX 6502328 6502924 -156097006 - L1ME3 LINE L1 -2 6162 5524 23 33 0 0 chrX 6502970 6503000 -156096930 + AT_rich Low_complexity Low_complexity 1 30 0 234 323 82 62 chrX 6503036 6503327 -156096603 - L2 LINE L2 0 3313 3017 193 340 75 38 chrX 6504509 6504615 -156095315 + L2 LINE L2 3162 3271 -1 211 308 206 62 chrX 6504955 6505018 -156094912 + L2 LINE L2 1600 1653 -1661 1294 222 21 21 chrX 6505018 6505306 -156094624 - AluJo SINE Alu -24 288 1 211 308 206 62 chrX 6505306 6505664 -156094266 + L2 LINE L2 1653 2082 -1232 756 243 5 36 chrX 6505843 6506065 -156093865 + MER58A DNA MER1_type 7 221 -3 511 321 126 40 chrX 6506118 6506807 -156093123 + L2 LINE L2 2262 3030 -242 26 30 0 0 chrX 6507337 6507370 -156092560 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 6507509 6507532 -156092398 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 6508249 6508272 -156091658 + AT_rich Low_complexity Low_complexity 1 23 0 753 204 47 13 chrX 6508402 6508637 -156091293 - LTR37A LTR ERV1 0 426 184 938 164 13 6 chrX 6508962 6509121 -156090809 - FRAM SINE Alu -22 154 1 220 254 17 0 chrX 6509125 6509184 -156090746 + (TA)n Simple_repeat Simple_repeat 2 61 0 2099 224 73 32 chrX 6510814 6511404 -156088526 + MLT1E2 LTR MaLR 1 614 -12 225 65 0 0 chrX 6512219 6512250 -156087680 + (TG)n Simple_repeat Simple_repeat 1 31 0 1099 86 0 0 chrX 6513233 6513372 -156086558 + AluSg/x SINE Alu 159 297 -13 248 260 115 77 chrX 6513404 6513481 -156086449 - LTR16A1 LTR ERVL 0 457 384 2267 92 7 0 chrX 6513481 6513785 -156086145 + AluSx SINE Alu 1 306 -6 248 260 115 77 chrX 6513785 6513942 -156085988 - LTR16A1 LTR ERVL -73 384 214 904 114 0 0 chrX 6514140 6514263 -156085667 + AluSp/q SINE Alu 173 295 -18 253 303 133 36 chrX 6514398 6514593 -156085337 + MIR SINE MIR 31 244 -18 333 243 7 13 chrX 6514745 6514897 -156085033 + CT-rich Low_complexity Low_complexity 2 152 0 231 342 99 12 chrX 6515135 6515296 -156084634 + MIR SINE MIR 34 208 -54 227 231 0 0 chrX 6515374 6515413 -156084517 - L2 LINE L2 -26 3246 3208 2318 81 0 0 chrX 6515434 6515719 -156084211 + AluSp SINE Alu 20 304 -9 638 220 0 68 chrX 6517400 6517577 -156082353 + MLT2C1 LTR ERVL 1 165 -232 547 238 6 55 chrX 6517488 6517669 -156082261 + MLT1D LTR MaLR 76 247 -258 * 1112 144 93 84 chrX 6517674 6518008 -156081922 + LTR24C LTR ERV1 1 337 -298 906 158 68 0 chrX 6518012 6518158 -156081772 - FRAM SINE Alu -21 155 1 822 225 47 36 chrX 6518159 6518435 -156081495 + LTR24C LTR ERV1 291 635 0 1146 206 12 8 chrX 6518436 6518683 -156081247 + MLT1D LTR MaLR 258 505 0 1545 209 146 75 chrX 6519013 6519624 -156080306 + MLT1E1 LTR MaLR 1 654 0 881 138 15 0 chrX 6520470 6520600 -156079330 + FLAM_C SINE Alu 1 132 -11 23 0 0 0 chrX 6521177 6521200 -156078730 + AT_rich Low_complexity Low_complexity 1 23 0 577 136 30 8 chrX 6521876 6522008 -156077922 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 1501 194 110 11 chrX 6522018 6522390 -156077540 - MLT2C2 LTR ERVL -55 409 1 461 287 8 0 chrX 6522527 6522649 -156077281 - L2 LINE L2 0 3313 3191 972 207 103 0 chrX 6522651 6522854 -156077076 + MER58A DNA MER1_type 1 224 0 323 351 55 25 chrX 6523433 6523635 -156076295 - MIR SINE MIR -9 253 46 300 358 106 6 chrX 6523841 6524020 -156075910 + L3 LINE CR1 923 1119 -458 229 257 0 0 chrX 6525444 6525514 -156074416 + (CAT)n Simple_repeat Simple_repeat 3 72 0 494 151 0 0 chrX 6525708 6525794 -156074136 + MIR SINE MIR 48 133 -129 317 303 68 8 chrX 6526160 6526292 -156073638 - MIR SINE MIR -63 199 60 2243 108 0 3 chrX 6527663 6527970 -156071960 - AluSq SINE Alu -7 306 1 879 214 29 29 chrX 6528506 6528712 -156071218 + MER3 DNA MER1_type 4 209 0 360 0 0 0 chrX 6530044 6530084 -156069846 + (TG)n Simple_repeat Simple_repeat 2 41 0 1287 254 60 9 chrX 6530456 6530890 -156069040 - MLT1C LTR MaLR 0 467 12 188 317 83 0 chrX 6531189 6531249 -156068681 + L2 LINE L2 3207 3271 -1 2052 217 78 25 chrX 6531738 6532292 -156067638 - MLT1E LTR MaLR 0 593 11 1061 155 133 0 chrX 6532450 6532676 -156067254 - LTR47A LTR ERVL 0 452 197 358 74 19 0 chrX 6532732 6532786 -156067144 + Alu SINE Alu 247 301 -1 319 341 119 59 chrX 6532855 6533400 -156066530 + L1ME LINE L1 39 616 -5503 344 331 54 14 chrX 6533451 6533599 -156066331 - L1 LINE L1 -1788 4358 4205 1877 170 6 12 chrX 6533599 6533940 -156065990 + MER7A DNA MER2_type 1 337 -9 464 312 88 37 chrX 6533942 6534295 -156065635 - L1 LINE L1 -1951 4195 3825 320 330 62 16 chrX 6534312 6534506 -156065424 + L1ME LINE L1 3469 3671 -2458 832 196 91 5 chrX 6534514 6534713 -156065217 + L1MB8 LINE L1 5910 6125 -53 660 292 0 0 chrX 6534743 6534897 -156065033 - FRAM SINE Alu -24 152 1 250 200 0 31 chrX 6534899 6534964 -156064966 + L1MB8 LINE L1 6114 6176 -2 253 177 42 42 chrX 6534971 6535067 -156064863 + L1ME LINE L1 3686 3781 -2348 302 287 45 13 chrX 6535151 6535308 -156064622 + L1ME LINE L1 4439 4600 -1529 217 186 23 0 chrX 6535350 6535393 -156064537 + T-rich Low_complexity Low_complexity 5 48 0 468 286 42 75 chrX 6535507 6535815 -156064115 + L1ME LINE L1 5324 5621 -532 1794 179 81 20 chrX 6536101 6536508 -156063422 - MSTB1 LTR MaLR 0 432 1 296 365 55 20 chrX 6536825 6537025 -156062905 - L2 LINE L2 -266 3047 2841 397 177 23 15 chrX 6538999 6539129 -156060801 + GA-rich Low_complexity Low_complexity 2 132 0 256 237 40 0 chrX 6539137 6539213 -156060717 - MIR SINE MIR -59 203 125 308 256 75 8 chrX 6539768 6539901 -156060029 - LTR33 LTR ERVL -356 165 24 2225 190 29 45 chrX 6540996 6541506 -156058424 + MLT1D LTR MaLR 4 505 0 623 195 24 61 chrX 6541993 6542083 -156057847 - MER5A DNA MER1_type -11 178 95 2112 152 30 25 chrX 6542083 6542444 -156057486 + THE1B LTR MaLR 2 364 0 623 195 24 61 chrX 6542444 6542517 -156057413 - MER5A DNA MER1_type -94 95 21 1559 182 54 11 chrX 6543359 6543639 -156056291 - AluJo SINE Alu -20 292 1 2092 163 5 14 chrX 6544510 6544878 -156055052 + MLT1A1 LTR MaLR 1 365 0 378 0 0 0 chrX 6545540 6545582 -156054348 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chrX 6545693 6545724 -156054206 + AT_rich Low_complexity Low_complexity 1 31 0 904 180 90 122 chrX 6545912 6546289 -156053641 + MLT1A1 LTR MaLR 1 365 0 200 114 45 23 chrX 6546329 6546373 -156053557 + T-rich Low_complexity Low_complexity 2 46 0 4517 82 5 16 chrX 6546375 6547013 -156052917 - L1PB2 LINE L1 -2 6149 5519 226 290 179 12 chrX 6548357 6548519 -156051411 - L2 LINE L2 -12 3301 3113 426 316 124 0 chrX 6548590 6548799 -156051131 - LTR16C LTR ERVL -54 437 203 41 82 0 0 chrX 6549577 6549674 -156050256 + AT_rich Low_complexity Low_complexity 1 97 0 320 245 237 7 chrX 6549852 6549991 -156049939 + MIR SINE MIR 84 254 -8 249 289 12 0 chrX 6550954 6551037 -156048893 - L1ME LINE L1 -503 5659 5576 319 336 70 50 chrX 6551051 6551328 -156048602 - L1ME LINE L1 -758 5388 5197 480 60 12 24 chrX 6551328 6551411 -156048519 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 319 336 70 50 chrX 6551411 6551672 -156048258 - L1ME LINE L1 -949 5197 4943 21 36 0 0 chrX 6551840 6551868 -156048062 + AT_rich Low_complexity Low_complexity 1 28 0 415 306 69 21 chrX 6551988 6552406 -156047524 - L1ME LINE L1 -1632 4514 4077 432 319 35 90 chrX 6552577 6553012 -156046918 + L2 LINE L2 1789 2199 -1115 298 316 49 31 chrX 6553013 6553238 -156046692 + L2 LINE L2 2530 2758 -556 245 296 69 84 chrX 6553334 6553537 -156046393 - L2 LINE L2 -243 3029 2830 257 226 107 0 chrX 6553711 6553795 -156046135 - MLT1F1 LTR MaLR 0 567 475 * 933 166 17 11 chrX 6553792 6553973 -156045957 - MLT1A1 LTR MaLR -179 186 5 1317 210 67 67 chrX 6553974 6554282 -156045648 + MER67D LTR ERV1 65 375 -139 1413 158 102 35 chrX 6554282 6554566 -156045364 - AluJo SINE Alu -9 303 1 1317 210 67 67 chrX 6554566 6554704 -156045226 + MER67D LTR ERV1 374 511 -3 342 0 0 0 chrX 6554761 6554799 -156045131 + (TG)n Simple_repeat Simple_repeat 2 39 0 342 286 10 0 chrX 6556076 6556174 -156043756 + MIR SINE MIR 34 132 -130 486 261 34 45 chrX 6556308 6556484 -156043446 + MIR SINE MIR 89 262 0 216 305 191 9 chrX 6557132 6557237 -156042693 - L2 LINE L2 -8 3264 3141 185 363 59 0 chrX 6557542 6557644 -156042286 + MIR SINE MIR 34 141 -121 207 69 0 0 chrX 6558225 6558254 -156041676 + (TG)n Simple_repeat Simple_repeat 2 30 0 1965 193 31 84 chrX 6559503 6560052 -156039878 + MLT2B1 LTR ERVL 1 520 0 226 318 37 19 chrX 6560064 6560171 -156039759 - MIR3 SINE MIR -28 180 72 2065 172 53 47 chrX 6560526 6560996 -156038934 + MLT1D LTR MaLR 31 503 -2 409 274 83 81 chrX 6561807 6561901 -156038029 + MLT1H LTR MaLR 35 127 -422 1853 166 157 18 chrX 6561901 6562341 -156037589 - MLT1D LTR MaLR 0 505 5 409 274 83 81 chrX 6562341 6562618 -156037312 + MLT1H LTR MaLR 127 407 -142 1714 162 67 63 chrX 6563822 6564040 -156035890 + MLT1C LTR MaLR 1 217 -250 2070 70 4 0 chrX 6564040 6564310 -156035620 + L1PA8A LINE L1 5860 6130 -1 1714 162 67 63 chrX 6564310 6564554 -156035376 + MLT1C LTR MaLR 217 465 -2 680 193 0 0 chrX 6564744 6564863 -156035067 - Tigger3(Golem) DNA MER2_type 0 3037 2919 255 309 0 0 chrX 6564869 6564950 -156034980 - Tigger3(Golem) DNA MER2_type -2948 81 1 728 207 67 0 chrX 6565428 6565592 -156034338 + MER58A DNA MER1_type 35 209 -15 461 286 8 16 chrX 6566754 6566880 -156033050 - L2 LINE L2 -2 3311 3187 482 190 98 15 chrX 6567334 6567479 -156032451 - MLT1G1 LTR MaLR -180 415 213 300 313 16 39 chrX 6567482 6567664 -156032266 + HAL1b LINE L1 541 718 -630 22 0 0 0 chrX 6567694 6567716 -156032214 + AT_rich Low_complexity Low_complexity 1 22 0 381 265 56 37 chrX 6567727 6568051 -156031879 + HAL1b LINE L1 832 1161 -187 781 168 6 52 chrX 6568069 6568242 -156031688 + MER47A DNA MER2_type 2 166 -200 911 196 29 6 chrX 6568257 6568430 -156031500 - FRAM SINE Alu 0 176 1 1010 143 10 54 chrX 6568444 6568647 -156031283 + MER47A DNA MER2_type 172 365 -1 257 291 60 8 chrX 6568657 6568791 -156031139 + HAL1b LINE L1 1204 1344 -4 291 205 84 0 chrX 6568826 6568909 -156031021 + MER58B DNA MER1_type 249 338 -3 367 318 117 7 chrX 6571156 6571310 -156028620 + MIR SINE MIR 8 178 -84 1597 300 94 31 chrX 6571464 6572290 -156027640 - L2 LINE L2 -1965 1349 472 458 262 81 27 chrX 6574547 6574696 -156025234 - MIR SINE MIR -78 184 28 255 31 0 0 chrX 6576430 6576462 -156023468 + (CA)n Simple_repeat Simple_repeat 2 33 0 335 296 138 33 chrX 6576508 6576660 -156023270 + L2 LINE L2 2863 3030 -283 215 296 42 28 chrX 6576659 6576730 -156023200 - L2 LINE L2 -836 2478 2407 * 473 250 29 15 chrX 6577038 6577174 -156022756 - Charlie8 DNA MER1_type -2240 177 40 207 196 22 0 chrX 6577497 6577543 -156022387 + (TG)n Simple_repeat Simple_repeat 1 47 0 1916 148 22 19 chrX 6577579 6577938 -156021992 - MLT1A1 LTR MaLR 0 365 6 186 43 0 0 chrX 6578202 6578225 -156021705 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 608 140 79 9 chrX 6578227 6578341 -156021589 - AluJo SINE Alu -30 282 161 * 717 161 9 0 chrX 6578340 6578452 -156021478 - AluJo SINE Alu -199 113 1 852 174 0 0 chrX 6579704 6579842 -156020088 + FLAM_C SINE Alu 1 138 -5 670 124 16 8 chrX 6579847 6579968 -156019962 + GA-rich Low_complexity Low_complexity 4 125 0 297 0 0 0 chrX 6580476 6580509 -156019421 + (CA)n Simple_repeat Simple_repeat 2 34 0 2334 81 0 19 chrX 6580523 6580832 -156019098 - AluSx SINE Alu -9 303 1 432 200 10 0 chrX 6581795 6581895 -156018035 - MER97c DNA MER1_type? -919 171 71 383 290 100 65 chrX 6584168 6584296 -156015634 - L1M4 LINE L1 -1308 5232 5110 1722 143 23 7 chrX 6584296 6584597 -156015333 - AluY SINE Alu -5 306 1 383 290 100 65 chrX 6584597 6584747 -156015183 - L1M4 LINE L1 -1430 5110 4944 408 297 103 20 chrX 6585310 6585681 -156014249 - L1MDa LINE L1 -3689 2851 2443 281 268 108 84 chrX 6586079 6586319 -156013611 - HAL1 LINE L1 -838 1669 1413 2839 102 21 37 chrX 6586319 6586752 -156013178 + MSTC LTR MaLR 3 428 0 281 268 108 84 chrX 6586752 6586937 -156012993 - HAL1 LINE L1 -1094 1413 1234 1110 160 19 9 chrX 6587415 6587575 -156012355 + MER20 DNA MER1_type 5 169 -50 207 0 0 0 chrX 6587575 6587598 -156012332 + (CA)n Simple_repeat Simple_repeat 1 23 0 1110 160 19 9 chrX 6587598 6587650 -156012280 + MER20 DNA MER1_type 169 219 0 2539 103 25 10 chrX 6588972 6589370 -156010560 + MLT2A1 LTR ERVL 1 404 -40 233 329 0 14 chrX 6589928 6590002 -156009928 + G-rich Low_complexity Low_complexity 1 72 0 512 273 145 54 chrX 6590156 6590316 -156009614 - MER50 LTR ERV1 -298 436 292 2102 106 0 0 chrX 6590316 6590600 -156009330 - AluY SINE Alu -7 304 21 512 273 145 54 chrX 6590600 6590831 -156009099 - MER50 LTR ERV1 -442 292 9 1414 214 105 21 chrX 6590907 6591374 -156008556 - MER84 LTR ERV1 0 507 2 301 111 28 139 chrX 6591374 6591446 -156008484 - MER84 LTR ERVI -433 74 11 * 1334 152 33 56 chrX 6591445 6591748 -156008182 - THE1C LTR MaLR -79 296 1 4859 110 12 8 chrX 6591748 6592494 -156007436 + L1PA15 LINE L1 5404 6152 -13 34 72 0 0 chrX 6592944 6593013 -156006917 + AT_rich Low_complexity Low_complexity 1 69 0 798 257 69 5 chrX 6593294 6593496 -156006434 + MIR SINE MIR 6 220 -42 2198 89 3 0 chrX 6593625 6593916 -156006014 - AluSp SINE Alu -13 300 9 2376 141 70 7 chrX 6594466 6594869 -156005061 + MSTA LTR MaLR 1 428 0 799 235 35 41 chrX 6595387 6595779 -156004151 - L1M3c LINE L1 -4729 1584 778 283 260 0 13 chrX 6595803 6595880 -156004050 - L1M3c LINE L1 -5117 1024 949 234 0 0 0 chrX 6595953 6595979 -156003951 + (TG)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chrX 6596618 6596643 -156003287 + AT_rich Low_complexity Low_complexity 1 25 0 894 66 0 0 chrX 6597268 6597374 -156002556 - AluY SINE Alu -179 132 27 775 224 54 18 chrX 6597537 6597760 -156002170 + MER46C DNA MER2_type 107 337 -1 4246 213 76 31 chrX 6598104 6599332 -156000598 + L1MA7 LINE L1 3671 4953 -1193 1330 147 49 0 chrX 6599332 6599556 -156000374 + Tigger3(Golem) DNA MER2_type 2804 3038 0 479 180 0 0 chrX 6599563 6599652 -156000278 + L1MA7 LINE L1 5388 5476 -858 3453 165 28 18 chrX 6599659 6600373 -155999557 + L1MA7 LINE L1 5571 6291 0 261 0 0 0 chrX 6600597 6600626 -155999304 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 5026 161 23 7 chrX 6600626 6602237 -155997693 - L1PA16 LINE L1 -12 6154 4531 334 332 82 71 chrX 6602383 6602859 -155997071 + L1M2 LINE L1 526 1006 -5843 286 61 41 0 chrX 6603014 6603063 -155996867 + (TA)n Simple_repeat Simple_repeat 1 51 0 189 0 0 0 chrX 6603062 6603083 -155996847 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 399 55 0 0 chrX 6603083 6603138 -155996792 + MLT2A2 LTR ERVL 399 453 0 1925 156 31 6 chrX 6603443 6603769 -155996161 - MER2 DNA MER2_type 0 345 12 507 199 6 21 chrX 6603919 6604084 -155995846 + MER58A DNA MER1_type 2 213 -11 333 298 7 0 chrX 6604642 6604783 -155995147 - L1MDa LINE L1 -3212 2917 2776 352 245 151 28 chrX 6605179 6605391 -155994539 - L1MDa LINE L1 -3978 2151 1914 28 0 0 0 chrX 6605479 6605507 -155994423 + AT_rich Low_complexity Low_complexity 1 28 0 234 297 77 19 chrX 6605756 6605911 -155994019 - L1MDa LINE L1 -4708 1421 1258 309 228 24 138 chrX 6605986 6606153 -155993777 - L1MDa LINE L1 -4918 1201 1054 246 285 63 65 chrX 6606776 6607110 -155992820 + HAL1b LINE L1 346 677 -671 343 334 126 26 chrX 6607278 6607368 -155992562 + L2 LINE L2 2124 2204 -1110 2893 143 5 20 chrX 6607368 6607809 -155992121 - Tigger2a DNA MER2_type 0 434 1 343 334 126 26 chrX 6607809 6608059 -155991871 + L2 LINE L2 2204 2498 -816 259 291 0 23 chrX 6608093 6608179 -155991751 - L2 LINE L2 -1529 1785 1702 1032 198 20 0 chrX 6608210 6608407 -155991523 - AluJo SINE Alu -2 310 110 258 32 0 0 chrX 6609376 6609407 -155990523 + (TTG)n Simple_repeat Simple_repeat 2 32 0 523 168 75 65 chrX 6609411 6609518 -155990412 - AluJo SINE Alu -188 124 17 180 111 0 0 chrX 6609659 6609686 -155990244 + (TC)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chrX 6609686 6609708 -155990222 + AT_rich Low_complexity Low_complexity 1 22 0 2988 103 15 5 chrX 6610722 6611130 -155988800 - L1PB1 LINE L1 -1 6150 5739 552 45 0 0 chrX 6611130 6611196 -155988734 + L1P5 LINE L1 5623 5688 -463 256 114 0 0 chrX 6611196 6611240 -155988690 + Alu SINE Alu 257 300 0 541 151 8 14 chrX 6611240 6611343 -155988587 + L1P5 LINE L1 5676 5749 -402 2005 115 0 67 chrX 6611519 6611711 -155988219 - AluSc SINE Alu -1 308 146 2379 98 0 3 chrX 6611711 6612018 -155987912 - AluSg SINE Alu -4 306 1 2005 115 0 67 chrX 6612018 6612155 -155987775 - AluSc SINE Alu -163 146 1 23232 113 139 60 chrX 6614089 6619770 -155980160 - L1PA7 LINE L1 0 6154 12 1661 107 133 125 chrX 6620369 6620744 -155979186 - MER83B LTR ERV1 0 378 1 1547 181 88 9 chrX 6621742 6622078 -155977852 - MLT1A1 LTR MaLR -2 455 1 235 341 44 7 chrX 6623018 6623153 -155976777 + LTR16B LTR ERVL 167 306 -158 1303 206 0 0 chrX 6625201 6625434 -155974496 + AluJo SINE Alu 1 233 -79 716 212 206 21 chrX 6625438 6625627 -155974303 - MER58A DNA MER1_type 0 224 1 801 245 72 78 chrX 6626535 6626645 -155973285 - L1ME1 LINE L1 -20 6146 6037 1820 163 3 10 chrX 6626645 6626940 -155972990 - AluJb SINE Alu -19 293 1 801 245 72 78 chrX 6626940 6627164 -155972766 - L1ME1 LINE L1 -129 6037 5855 259 210 16 0 chrX 6627164 6627226 -155972704 + LTR66 LTR ERVL 377 439 -171 249 294 0 24 chrX 6627226 6627311 -155972619 - L1MC4 LINE L1 -1345 6697 6615 270 0 0 0 chrX 6627311 6627341 -155972589 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 1814 152 3 10 chrX 6627341 6627631 -155972299 - AluJo SINE Alu -24 288 1 1010 247 34 8 chrX 6627632 6627899 -155972031 - L1MD2 LINE L1 -515 5844 5571 224 326 97 14 chrX 6627969 6628113 -155971817 + MIR SINE MIR 64 219 -43 784 230 32 0 chrX 6628125 6628312 -155971618 + MER20B DNA MER1_type 2 194 -25 22 35 0 0 chrX 6628507 6628536 -155971394 + AT_rich Low_complexity Low_complexity 1 29 0 750 200 11 18 chrX 6629357 6629541 -155970389 - L1MB8 LINE L1 -1 6177 5984 254 253 162 0 chrX 6629680 6629834 -155970096 + MER96B DNA MER1_type? 1 179 -238 2176 103 0 0 chrX 6629916 6630224 -155969706 + AluSx SINE Alu 1 308 0 571 207 8 8 chrX 6630261 6630382 -155969548 + MER96B DNA MER1_type? 297 417 0 2191 144 14 11 chrX 6630867 6631228 -155968702 + L1MA8 LINE L1 5926 6287 -4 30 45 0 0 chrX 6632062 6632106 -155967824 + AT_rich Low_complexity Low_complexity 1 44 0 256 275 44 0 chrX 6632115 6632206 -155967724 + LTR33 LTR ERVL 27 121 -400 32 26 0 0 chrX 6632582 6632621 -155967309 + AT_rich Low_complexity Low_complexity 1 39 0 605 158 75 0 chrX 6632656 6632789 -155967141 - L1MB4 LINE L1 0 6180 6038 2939 188 33 5 chrX 6632816 6633385 -155966545 - L1MB3 LINE L1 -9 6174 5590 419 258 37 43 chrX 6634628 6634791 -155965139 - MER5A DNA MER1_type 0 189 28 1658 234 83 45 chrX 6634794 6635277 -155964653 - MLT1D LTR MaLR -3 502 2 235 238 24 24 chrX 6635516 6635642 -155964288 + (CCGCG)n Simple_repeat Simple_repeat 1 126 0 46 62 0 0 chrX 6635648 6635729 -155964201 + GC_rich Low_complexity Low_complexity 1 81 0 1738 162 14 17 chrX 6636022 6636319 -155963611 - AluJo SINE Alu -16 296 1 780 153 51 0 chrX 6636320 6636438 -155963492 - AluJo/FLAM SINE Alu -186 126 3 210 71 0 0 chrX 6637282 6637310 -155962620 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 287 248 28 55 chrX 6637532 6637641 -155962289 - MIR SINE MIR -64 144 39 240 35 0 0 chrX 6638180 6638209 -155961721 + (TTG)n Simple_repeat Simple_repeat 2 30 0 805 169 0 8 chrX 6638213 6638337 -155961593 - FLAM_C SINE Alu -19 124 2 218 307 59 10 chrX 6640934 6641035 -155958895 - L2 LINE L2 0 3313 3208 460 322 50 32 chrX 6641162 6641445 -155958485 - L2 LINE L2 -339 2975 2688 2270 204 8 6 chrX 6641445 6641920 -155958010 + L1MD3 LINE L1 7398 7873 -122 509 114 190 0 chrX 6641923 6642048 -155957882 - MSTD LTR MaLR -8 383 199 1317 203 117 34 chrX 6642062 6642480 -155957450 + MER92B LTR ERV1 184 636 0 232 150 50 0 chrX 6643294 6643354 -155956576 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 785 211 23 6 chrX 6643415 6643586 -155956344 - MER92B LTR ERV1 -462 174 1 2317 173 22 10 chrX 6644095 6644512 -155955418 + L1PB4 LINE L1 5620 6041 -115 * 9180 178 8 4 chrX 6644511 6646200 -155953730 + L1P LINE L1 3707 5403 -743 2000 143 102 6 chrX 6646205 6646547 -155953383 - THE1C LTR MaLR 0 375 1 9410 117 74 17 chrX 6646547 6648040 -155951890 - THE1C-int LTR MaLR 0 1580 4 921 208 25 72 chrX 6648040 6648276 -155951654 - MER50 LTR ERV1 0 734 510 3049 235 14 8 chrX 6648508 6648870 -155951060 - L1 LINE L1 -1619 5229 4870 565 91 13 0 chrX 6648870 6648947 -155950983 - MADE1 DNA Mariner -2 78 1 3049 235 14 8 chrX 6648947 6649321 -155950609 - L1 LINE L1 -1978 4870 4489 2212 143 68 0 chrX 6650312 6650677 -155949253 - MLT1B LTR MaLR 0 390 1 333 280 159 34 chrX 6650971 6651210 -155948720 - L1 LINE L1 -5484 1365 1097 324 59 137 0 chrX 6651393 6651546 -155948384 + (TA)n Simple_repeat Simple_repeat 2 175 0 281 67 0 22 chrX 6653101 6653146 -155946784 + (CTG)n Simple_repeat Simple_repeat 2 45 0 313 202 81 30 chrX 6653872 6654024 -155945906 + MER4C-int LTR ERV1 1295 3316 -3015 8696 192 45 56 chrX 6654025 6655919 -155944011 + MER4C-int LTR ERV1 2041 3955 -2777 2406 84 0 3 chrX 6655919 6656215 -155943715 + AluSg SINE Alu 1 295 -15 8696 192 45 56 chrX 6656215 6656771 -155943159 + MER4C-int LTR ERV1 3955 6006 -726 422 36 18 0 chrX 6656797 6656853 -155943077 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 710 222 7 0 chrX 6656874 6657018 -155942912 + MER4C-int LTR ERV1 5852 5996 -335 410 240 37 141 chrX 6657106 6657348 -155942582 + MER4C-int LTR ERV1 6368 6584 -14 835 224 41 129 chrX 6657364 6657874 -155942056 + MER4C LTR ERV1 1 465 0 1826 235 75 27 chrX 6657874 6658722 -155941208 + L1MCb LINE L1 815 1700 -4856 297 376 12 18 chrX 6658806 6658976 -155940954 - L1PBb LINE L1 -5641 1944 1776 230 306 84 58 chrX 6659227 6659488 -155940442 - L1PBb LINE L1 -5782 1803 1536 370 370 52 35 chrX 6659560 6659733 -155940197 - L1PBb LINE L1 -6018 1567 1392 849 277 36 27 chrX 6660079 6660490 -155939440 - L1PBb LINE L1 -7166 415 1 615 236 0 0 chrX 6661367 6661477 -155938453 + FLAM_A SINE Alu 1 110 -32 2253 117 0 0 chrX 6661538 6661847 -155938083 - AluY SINE Alu -2 309 1 194 225 0 0 chrX 6661994 6662034 -155937896 + L2 LINE L2 3269 3308 -5 1711 255 38 36 chrX 6662265 6662822 -155937108 + MER74A LTR ERVL 1 558 0 933 199 6 17 chrX 6663189 6663370 -155936560 - MER5A DNA MER1_type -1 188 10 3349 206 73 9 chrX 6664571 6665743 -155934187 + L1MA9 LINE L1 4540 5855 -457 207 0 0 0 chrX 6665743 6665766 -155934164 + (CA)n Simple_repeat Simple_repeat 2 24 0 3349 206 73 9 chrX 6665766 6666256 -155933674 + L1MA9 LINE L1 5855 6312 0 258 304 36 18 chrX 6666720 6666832 -155933098 + MLT1H1 LTR MaLR 109 222 -333 1934 130 0 7 chrX 6667476 6667791 -155932139 + AluSx SINE Alu 3 315 0 22 70 0 0 chrX 6667894 6667937 -155931993 + AT_rich Low_complexity Low_complexity 1 43 0 28 48 0 0 chrX 6668414 6668456 -155931474 + AT_rich Low_complexity Low_complexity 1 42 0 406 300 175 21 chrX 6668818 6669098 -155930832 + L1MB2 LINE L1 103 425 -5855 1041 232 42 110 chrX 6669631 6670489 -155929441 + L1MB2 LINE L1 777 1656 -4657 22 35 0 0 chrX 6670624 6670653 -155929277 + AT_rich Low_complexity Low_complexity 1 29 0 2291 90 3 3 chrX 6670747 6671047 -155928883 + AluY SINE Alu 1 300 -11 216 0 0 0 chrX 6671137 6671161 -155928769 + (T)n Simple_repeat Simple_repeat 1 24 0 668 155 16 39 chrX 6671173 6671302 -155928628 + FLAM_C SINE Alu 2 127 -16 200 206 32 16 chrX 6671516 6671579 -155928351 + (TA)n Simple_repeat Simple_repeat 2 65 0 38 39 0 0 chrX 6672421 6672473 -155927457 + AT_rich Low_complexity Low_complexity 1 52 0 1264 172 5 0 chrX 6672595 6672804 -155927126 + AluJb SINE Alu 95 304 -8 1277 155 5 14 chrX 6672834 6673041 -155926889 + AluJo SINE Alu 1 205 -107 751 176 0 0 chrX 6673321 6673440 -155926490 - FLAM_C SINE Alu -20 123 5 985 273 24 60 chrX 6673493 6673959 -155925971 + MLT1D LTR MaLR 3 451 -54 1820 159 24 11 chrX 6673989 6674361 -155925569 - L1MA8 LINE L1 -6 6285 5909 671 227 0 0 chrX 6674362 6674490 -155925440 + FLAM_C SINE Alu 2 129 -4 360 0 0 0 chrX 6674491 6674531 -155925399 + (TG)n Simple_repeat Simple_repeat 2 41 0 475 117 61 6 chrX 6674534 6674697 -155925233 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 1550 216 37 117 chrX 6675180 6676149 -155923781 - L1M4c LINE L1 -4767 1617 777 1252 244 49 16 chrX 6676142 6676720 -155923210 + L1MB2 LINE L1 1924 2520 -3862 * 1186 242 16 22 chrX 6676712 6677076 -155922854 + L1MB2 LINE L1 4930 5291 -1091 * 892 202 98 7 chrX 6677072 6677363 -155922567 + L1MB2 LINE L1 6097 6373 -34 * 1281 242 60 23 chrX 6679686 6680037 -155919893 - MLT1A1 LTR MaLR -1 364 1 1550 179 50 0 chrX 6680098 6680377 -155919553 - MER1A DNA MER1_type -234 295 3 379 288 100 18 chrX 6680382 6680611 -155919319 - MER46C DNA MER2_type -90 248 1 25 31 0 0 chrX 6680673 6680705 -155919225 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chrX 6680734 6680763 -155919167 + AT_rich Low_complexity Low_complexity 1 29 0 318 89 0 0 chrX 6680763 6680808 -155919122 - AluSg/x SINE Alu -168 132 88 247 363 0 17 chrX 6680922 6681101 -155918829 + C-rich Low_complexity Low_complexity 2 177 0 * 252 272 20 54 chrX 6680969 6681116 -155918814 + (CCCCG)n Simple_repeat Simple_repeat 1 142 0 294 156 0 0 chrX 6681165 6681229 -155918701 + C-rich Low_complexity Low_complexity 1 64 0 295 236 11 34 chrX 6681294 6681383 -155918547 + C-rich Low_complexity Low_complexity 3 89 0 333 98 92 7 chrX 6681613 6681766 -155918164 + (TA)n Simple_repeat Simple_repeat 1 166 0 379 142 68 0 chrX 6681819 6681981 -155917949 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 304 136 64 0 chrX 6681996 6682121 -155917809 + (TTATA)n Simple_repeat Simple_repeat 2 134 0 451 125 65 0 chrX 6682136 6682304 -155917626 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 799 201 26 0 chrX 6682317 6682471 -155917459 + FRAM SINE Alu 1 152 -24 2227 121 0 0 chrX 6683700 6684006 -155915924 - AluSx SINE Alu -5 307 2 183 353 128 32 chrX 6685572 6685821 -155914109 - L2 LINE L2 -649 2665 2393 924 68 53 0 chrX 6686475 6686607 -155913323 - MER85 DNA T2_type 0 139 1 657 265 10 15 chrX 6687335 6687539 -155912391 + L2 LINE L2 648 850 -2464 355 266 53 111 chrX 6687593 6687819 -155912111 - MIR SINE MIR -49 213 1 497 306 174 29 chrX 6687820 6688205 -155911725 + L2 LINE L2 850 1290 -2024 231 114 0 0 chrX 6688338 6688373 -155911557 + (TTC)n Simple_repeat Simple_repeat 2 36 0 1403 134 5 0 chrX 6690588 6690812 -155909118 + L1PA15 LINE L1 5936 6160 -5 413 272 164 76 chrX 6692261 6692883 -155907047 + L1M2 LINE L1 527 1203 -5646 941 113 0 0 chrX 6692950 6693091 -155906839 + AluSp/q SINE Alu 173 313 0 1906 109 40 0 chrX 6693540 6693688 -155906242 - AluSx SINE Alu -25 287 146 420 71 0 0 chrX 6693688 6693744 -155906186 + (TTG)n Simple_repeat Simple_repeat 1 56 0 1906 109 40 0 chrX 6693744 6693871 -155906059 - AluSx SINE Alu -166 146 1 2421 28 0 0 chrX 6694886 6695172 -155904758 + L1PA4 LINE L1 5867 6152 -3 198 0 0 0 chrX 6695258 6695280 -155904650 + (TG)n Simple_repeat Simple_repeat 1 22 0 2323 90 3 0 chrX 6695283 6695583 -155904347 - AluSq SINE Alu -12 301 1 187 302 16 0 chrX 6695924 6695987 -155903943 - L3b LINE CR1 -351 1232 1169 25 51 0 0 chrX 6696329 6696368 -155903562 + AT_rich Low_complexity Low_complexity 1 39 0 2200 116 137 11 chrX 6696468 6696848 -155903082 - MSTA LTR MaLR 0 428 1 299 308 93 6 chrX 6697863 6698035 -155901895 - MARNA DNA Mariner -108 478 292 223 318 30 23 chrX 6698054 6698186 -155901744 + (CATG)n Simple_repeat Simple_repeat 1 133 0 2080 199 28 37 chrX 6698442 6698950 -155900980 - MLT1D LTR MaLR -2 503 1 1243 229 75 5 chrX 6699591 6699975 -155899955 - L1M4 LINE L1 -976 5170 4760 798 276 89 13 chrX 6700066 6700526 -155899404 - MER20B DNA MER1_type -80 703 209 2973 70 0 12 chrX 6701660 6702074 -155897856 - L1PA8A LINE L1 -4 6127 5719 1913 129 0 3 chrX 6702077 6702402 -155897528 + L1P LINE L1 4600 4923 -1223 1895 65 0 8 chrX 6702471 6702716 -155897214 - L1PA5 LINE L1 -4 6150 5908 1054 88 0 0 chrX 6702816 6702953 -155896977 + AluSg/x SINE Alu 171 307 -5 740 226 91 68 chrX 6702953 6703262 -155896668 + MLT1C LTR MaLR 88 403 -64 214 370 14 0 chrX 6703315 6703388 -155896542 + L2 LINE L2 2567 2640 -674 231 36 0 0 chrX 6703430 6703458 -155896472 + (TC)n Simple_repeat Simple_repeat 1 28 0 410 317 72 0 chrX 6703853 6704020 -155895910 - MIR SINE MIR -3 259 81 24 0 0 0 chrX 6704024 6704048 -155895882 + AT_rich Low_complexity Low_complexity 1 24 0 6469 135 10 3 chrX 6704050 6705425 -155894505 - L1MA2 LINE L1 0 6304 4922 22 70 0 0 chrX 6705730 6705773 -155894157 + AT_rich Low_complexity Low_complexity 1 43 0 215 137 55 0 chrX 6705776 6705849 -155894081 + (TA)n Simple_repeat Simple_repeat 1 77 0 22 0 0 0 chrX 6706060 6706082 -155893848 + AT_rich Low_complexity Low_complexity 1 22 0 394 222 28 6 chrX 6706131 6706483 -155893447 + (TA)n Simple_repeat Simple_repeat 1 360 0 344 290 107 76 chrX 6708495 6708560 -155891370 - MIR SINE MIR -31 231 169 1353 268 76 16 chrX 6708560 6709046 -155890884 - MLT2B2 LTR ERVL 0 515 1 344 290 107 76 chrX 6709046 6709204 -155890726 - MIR SINE MIR -93 169 1 826 232 30 15 chrX 6710192 6710436 -155889494 + L1 LINE L1 5024 5274 -872 298 0 23 23 chrX 6710436 6710479 -155889451 + (TA)n Simple_repeat Simple_repeat 1 43 0 826 232 30 15 chrX 6710479 6710497 -155889433 + L1 LINE L1 5274 5290 -856 234 0 0 0 chrX 6710501 6710527 -155889403 + (CAT)n Simple_repeat Simple_repeat 1 26 0 334 309 61 44 chrX 6712017 6712677 -155887253 + L1M4 LINE L1 2248 2918 -3228 363 23 0 0 chrX 6712850 6712894 -155887036 + (TG)n Simple_repeat Simple_repeat 1 44 0 264 253 13 0 chrX 6712952 6713031 -155886899 + L1MC5 LINE L1 7809 7888 -73 411 321 91 49 chrX 6713173 6713578 -155886352 - L1MC4a LINE L1 -1866 5942 5521 3911 89 2 34 chrX 6714019 6714615 -155885315 + L1PB1 LINE L1 5575 6151 0 186 358 220 0 chrX 6715333 6715506 -155884424 - MIR SINE MIR -21 241 31 284 157 84 36 chrX 6715605 6715688 -155884242 - L1MB3 LINE L1 -1 6182 6096 2819 128 49 16 chrX 6715788 6716121 -155883809 + L1MB1 LINE L1 5158 5525 -809 2102 121 0 0 chrX 6716121 6716435 -155883495 + AluSx SINE Alu 1 314 0 2819 128 49 16 chrX 6716435 6716706 -155883224 + L1MB1 LINE L1 5525 5786 -548 846 125 0 0 chrX 6716710 6716830 -155883100 - AluSg/x SINE Alu -41 271 152 1507 180 23 0 chrX 6716830 6717130 -155882800 + L1MB1 LINE L1 5789 6095 -73 1861 163 0 23 chrX 6717547 6717854 -155882076 - AluJb SINE Alu -12 300 1 351 206 62 10 chrX 6717863 6717960 -155881970 + MER5C DNA MER1_type 212 313 -11 24 0 0 0 chrX 6718250 6718274 -155881656 + AT_rich Low_complexity Low_complexity 1 24 0 3080 129 20 8 chrX 6718274 6718785 -155881145 - L1PB4 LINE L1 -8 6148 5632 2157 126 3 28 chrX 6719046 6719364 -155880566 - AluJb SINE Alu -2 310 1 1099 179 1 15 chrX 6719652 6719865 -155880065 + MLT1E LTR MaLR 380 545 -4 2204 140 22 36 chrX 6723774 6724187 -155875743 + Tigger2a DNA MER2_type 2 408 -26 234 0 0 0 chrX 6724589 6724615 -155875315 + (A)n Simple_repeat Simple_repeat 1 26 0 216 152 22 43 chrX 6724963 6725009 -155874921 + CT-rich Low_complexity Low_complexity 1 45 0 312 302 8 8 chrX 6725223 6725349 -155874581 + (TA)n Simple_repeat Simple_repeat 2 127 0 966 253 101 22 chrX 6725551 6725867 -155874063 + MLT1E LTR MaLR 15 355 -238 507 222 0 0 chrX 6727409 6727526 -155872404 + (TA)n Simple_repeat Simple_repeat 1 117 0 315 269 0 43 chrX 6727531 6727624 -155872306 - L1MC4 LINE L1 -1339 6703 6615 426 176 0 0 chrX 6727633 6727718 -155872212 + (TA)n Simple_repeat Simple_repeat 2 86 0 1060 144 26 0 chrX 6728005 6728200 -155871730 - L1MB7 LINE L1 -241 5943 5744 306 231 0 0 chrX 6728255 6728346 -155871584 + (TG)n Simple_repeat Simple_repeat 2 92 0 625 236 66 33 chrX 6728595 6728807 -155871123 + MER20 DNA MER1_type 1 219 0 3051 22 0 0 chrX 6731032 6731397 -155868533 - L1P2 LINE L1 -383 5771 5407 862 233 57 28 chrX 6732044 6732396 -155867534 + L1M4 LINE L1 2640 3001 -3145 1690 154 79 25 chrX 6733050 6733091 -155866839 - THE1C LTR MaLR 0 375 338 2035 116 0 0 chrX 6733091 6733368 -155866562 + AluSx SINE Alu 1 277 -35 1690 154 79 25 chrX 6733368 6733682 -155866248 - THE1C LTR MaLR -37 338 1 2193 107 7 0 chrX 6734265 6734555 -155865375 - AluSq SINE Alu -20 293 2 422 272 53 0 chrX 6735256 6735370 -155864560 - L2 LINE L2 -1 3312 3193 942 361 102 23 chrX 6736042 6737281 -155862649 + L2 LINE L2 1726 3062 -210 369 198 117 0 chrX 6737567 6737678 -155862252 + L1ME3A LINE L1 5458 5581 -585 775 225 120 8 chrX 6737780 6738038 -155861892 + L1ME3A LINE L1 5876 6162 -8 617 249 107 0 chrX 6738045 6738270 -155861660 - L1ME3A LINE L1 -54 6116 5868 225 235 0 0 chrX 6738281 6738332 -155861598 - L2 LINE L2 -962 2352 2302 434 272 44 9 chrX 6738505 6738619 -155861311 + L2 LINE L2 3186 3303 -10 456 265 27 7 chrX 6739153 6739300 -155860630 + MER45R DNA AcHobo 418 567 -1014 557 243 7 0 chrX 6739310 6739454 -155860476 - Tigger6a DNA MER2_type -542 541 397 324 115 0 9 chrX 6740332 6740396 -155859534 + Alu SINE Alu 1 46 -256 1047 196 33 9 chrX 6740600 6740814 -155859116 - MER20 DNA MER1_type 0 219 1 2267 110 0 16 chrX 6741144 6741453 -155858477 - AluSx SINE Alu -8 304 1 476 258 204 15 chrX 6742280 6742544 -155857386 + MLT1K LTR MaLR 256 569 -19 201 39 0 0 chrX 6743724 6743750 -155856180 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chrX 6744467 6744495 -155855435 + AT_rich Low_complexity Low_complexity 1 28 0 471 165 0 11 chrX 6745210 6745301 -155854629 + L1 LINE L1 4894 4983 -1163 2082 115 7 3 chrX 6745697 6745984 -155853946 - AluSx SINE Alu -24 288 1 271 337 11 80 chrX 6746204 6746391 -155853539 + L2 LINE L2 2992 3165 -107 481 266 22 43 chrX 6746407 6746546 -155853384 + MIR SINE MIR 2 137 -125 1499 211 14 6 chrX 6746936 6747297 -155852633 + L1MB8 LINE L1 5813 6176 -2 1619 98 10 0 chrX 6747309 6747513 -155852417 + AluSq SINE Alu 1 206 -107 337 119 0 0 chrX 6747514 6747573 -155852357 + AluSq SINE Alu 243 301 0 23 0 0 0 chrX 6747717 6747740 -155852190 + AT_rich Low_complexity Low_complexity 1 23 0 2137 162 11 11 chrX 6747745 6748110 -155851820 + MLT1A1 LTR MaLR 1 365 0 204 277 221 34 chrX 6748204 6748418 -155851512 + L2 LINE L2 1985 2248 -1066 333 0 0 0 chrX 6748418 6748455 -155851475 + (CA)n Simple_repeat Simple_repeat 2 38 0 204 277 221 34 chrX 6748455 6748475 -155851455 + L2 LINE L2 2248 2263 -1051 352 379 53 46 chrX 6748658 6749348 -155850582 + L2 LINE L2 2543 3272 0 26 30 0 0 chrX 6749887 6749920 -155850010 + AT_rich Low_complexity Low_complexity 1 33 0 2036 101 10 24 chrX 6751441 6751738 -155848192 - AluSq SINE Alu -16 297 5 1824 165 0 4 chrX 6751969 6752248 -155847682 + AluJb SINE Alu 1 278 -34 982 114 6 6 chrX 6752251 6752417 -155847513 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 750 288 10 0 chrX 6753210 6753415 -155846515 - MLT1E3 LTR MaLR 0 624 418 358 203 75 60 chrX 6753516 6753601 -155846329 - MLT1E1 LTR MaLR -354 300 211 2692 154 7 0 chrX 6753601 6754024 -155845906 + MSTC LTR MaLR 3 428 0 358 203 75 60 chrX 6754024 6754071 -155845859 - MLT1E1 LTR MaLR -443 211 166 * 625 230 0 0 chrX 6754057 6754183 -155845747 - MLT1E1 LTR MaLR -521 133 8 232 130 56 0 chrX 6754448 6754502 -155845428 + GA-rich Low_complexity Low_complexity 3 59 0 3426 130 5 0 chrX 6754531 6755144 -155844786 + L1PA16 LINE L1 5431 6160 -6 237 255 62 125 chrX 6755184 6755392 -155844538 - L2 LINE L2 0 3313 3119 426 221 215 0 chrX 6755976 6756134 -155843796 + L1MC2 LINE L1 6140 6331 -13 261 124 93 0 chrX 6756394 6756523 -155843407 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 3544 65 9 0 chrX 6756568 6757028 -155842902 - L1PA13 LINE L1 -4 6159 5696 253 275 81 47 chrX 6757077 6757335 -155842595 - L1M4 LINE L1 -1353 4793 4527 2401 60 0 0 chrX 6757385 6757700 -155842230 - AluY SINE Alu 0 315 1 1163 226 141 19 chrX 6757729 6758203 -155841727 - L1ME1 LINE L1 -18 6148 5617 388 289 58 5 chrX 6758229 6758437 -155841493 - L1M4 LINE L1 -1693 4453 4235 402 314 114 68 chrX 6759476 6759887 -155840043 - L1MEd LINE L1 -5674 445 16 639 124 0 0 chrX 6760751 6760840 -155839090 - AluSg/x SINE Alu -18 292 204 932 241 169 16 chrX 6761824 6762131 -155837799 - MLT1E LTR MaLR 0 593 240 297 250 0 0 chrX 6762331 6762395 -155837535 - HsTC2 DNA Tc2 -1798 100 37 860 143 0 7 chrX 6762451 6762591 -155837339 - L1MB8 LINE L1 -18 6160 6022 219 150 0 0 chrX 6762591 6762631 -155837299 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 228 156 0 0 chrX 6762638 6762670 -155837260 - 5S rRNA rRNA 0 121 90 549 15 0 0 chrX 6763071 6763136 -155836794 + L1PA4 LINE L1 6091 6155 0 2416 144 45 13 chrX 6763165 6763562 -155836368 + MSTB LTR MaLR 1 410 -16 339 291 100 0 chrX 6763845 6763955 -155835975 - MER103 DNA DNA -44 122 2 354 271 26 46 chrX 6764053 6764204 -155835726 - L3 LINE CR1 -627 950 803 1299 241 78 74 chrX 6765077 6765617 -155834313 + MLT1E LTR MaLR 52 593 0 265 321 9 36 chrX 6766997 6767109 -155832821 - MIR3 SINE MIR -8 200 92 6108 139 30 10 chrX 6767473 6769049 -155830881 + L1MA5A LINE L1 4685 6292 -5 420 309 62 14 chrX 6769231 6769441 -155830489 - MIR SINE MIR -12 250 31 1949 120 54 37 chrX 6769570 6769921 -155830009 - THE1C LTR MaLR -18 357 1 589 288 0 0 chrX 6770181 6770313 -155829617 + MER58A DNA MER1_type 1 132 0 302 318 11 0 chrX 6771117 6771205 -155828725 - MER63A DNA MER1_type -27 183 95 237 251 106 97 chrX 6771219 6771446 -155828484 + HAL1 LINE L1 2279 2507 0 453 322 52 14 chrX 6771458 6771669 -155828261 + MIR SINE MIR 34 252 -10 248 180 66 0 chrX 6772814 6772875 -155827055 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 399 291 20 92 chrX 6772993 6773340 -155826590 - L2 LINE L2 -1 3312 2991 1859 253 132 11 chrX 6773413 6773942 -155825988 - MLT1E LTR MaLR 0 593 1 254 188 0 0 chrX 6773948 6773996 -155825934 - L2 LINE L2 -498 2816 2769 445 115 16 0 chrX 6775747 6775808 -155824122 - AluS SINE Alu -250 63 2 25 0 0 0 chrX 6776294 6776319 -155823611 + AT_rich Low_complexity Low_complexity 1 25 0 392 302 0 0 chrX 6776730 6776836 -155823094 - MER5A DNA MER1_type -80 109 4 258 81 0 0 chrX 6777506 6777543 -155822387 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1580 177 38 13 chrX 6777599 6777915 -155822015 - MER33 DNA MER1_type 0 324 1 222 313 30 0 chrX 6777961 6778028 -155821902 + MIR3 SINE MIR 86 154 -54 217 369 0 0 chrX 6778689 6778754 -155821176 + L2 LINE L2 3207 3271 -1 1297 35 0 12 chrX 6779123 6779292 -155820638 + (GAA)n Simple_repeat Simple_repeat 1 167 0 321 68 0 0 chrX 6779292 6779336 -155820594 + (GA)n Simple_repeat Simple_repeat 1 44 0 1955 164 0 6 chrX 6779930 6780242 -155819688 + AluJo SINE Alu 1 310 -2 279 274 9 101 chrX 6780396 6780578 -155819352 - L2 LINE L2 -4 3309 3149 2379 219 41 2 chrX 6780578 6781062 -155818868 - MLT1D LTR MaLR 0 505 3 279 274 9 101 chrX 6781062 6781098 -155818832 - L2 LINE L2 -164 3149 3111 559 229 84 0 chrX 6781327 6781458 -155818472 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1385 176 24 0 chrX 6781456 6781706 -155818224 + Tigger3(Golem) DNA MER2_type 2772 3027 -2 248 227 0 0 chrX 6781884 6781928 -155818002 - MER2 DNA MER2_type -20 325 282 * 621 326 6 0 chrX 6781903 6782081 -155817849 - MER8 DNA MER2_type -60 179 1 1350 157 0 9 chrX 6782477 6782694 -155817236 + L1PA15 LINE L1 5949 6163 -2 2228 106 0 26 chrX 6783669 6783980 -155815950 - AluSx SINE Alu -9 303 1 2378 97 3 6 chrX 6784653 6784964 -155814966 - AluSx SINE Alu 0 312 3 459 0 0 0 chrX 6785919 6785970 -155813960 + (GA)n Simple_repeat Simple_repeat 1 51 0 11512 71 13 0 chrX 6786352 6787771 -155812159 - HERVL LTR ERVL -1400 4254 2818 1833 109 158 21 chrX 6787788 6788118 -155811812 - THE1C LTR MaLR 0 375 1 319 235 12 12 chrX 6788118 6788199 -155811731 + Charlie8 DNA MER1_type 341 421 -1996 229 273 0 30 chrX 6788211 6788277 -155811653 + Charlie8 DNA MER1_type 2344 2407 -10 1316 259 55 62 chrX 6788655 6788830 -155811100 + L1MCc LINE L1 10 185 -6238 3678 108 12 0 chrX 6788830 6789331 -155810599 + MER84 LTR ERV1 1 507 0 1316 259 55 62 chrX 6789331 6789387 -155810543 + L1MCc LINE L1 185 240 -6183 2277 118 0 0 chrX 6789387 6789693 -155810237 + AluY SINE Alu 1 306 -5 1316 259 55 62 chrX 6789693 6790038 -155809892 + L1MCc LINE L1 240 583 -5840 1735 262 68 61 chrX 6790145 6792036 -155807894 + L1MCc LINE L1 817 2923 -4199 343 232 0 24 chrX 6793254 6793336 -155806594 + MER116 DNA Mariner 1 80 0 921 86 7 13 chrX 6794354 6794506 -155805424 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1823 124 30 0 chrX 6794513 6794779 -155805151 - AluJb SINE Alu -38 274 1 625 242 122 95 chrX 6795786 6796241 -155803689 - MLT1G LTR MaLR -41 526 64 743 286 82 59 chrX 6796696 6797258 -155802672 + L1MCc LINE L1 3461 4035 -2906 333 249 100 73 chrX 6797269 6797567 -155802363 + L1MCc LINE L1 4059 4362 -2579 1354 93 0 0 chrX 6797683 6797855 -155802075 + AluY SINE Alu 128 299 -12 325 305 95 62 chrX 6797896 6799471 -155800459 + L1MCc LINE L1 4478 6103 -838 22 0 0 0 chrX 6799674 6799696 -155800234 + AT_rich Low_complexity Low_complexity 1 22 0 2390 99 0 0 chrX 6799708 6800012 -155799918 - AluSx SINE Alu -8 304 1 2294 99 0 10 chrX 6800906 6801218 -155798712 + AluSc SINE Alu 1 309 0 989 137 51 30 chrX 6801693 6801890 -155798040 - THE1C LTR MaLR 0 375 175 413 212 40 20 chrX 6801948 6802047 -155797883 + THE1B LTR MaLR 1 101 -274 463 101 14 0 chrX 6802147 6802216 -155797714 + THE1B LTR MaLR 295 364 0 2621 151 39 2 chrX 6802483 6802894 -155797036 + MSTB LTR MaLR 1 426 0 868 148 15 103 chrX 6803010 6803216 -155796714 + L1MD2 LINE L1 5826 6021 -143 205 333 28 0 chrX 6803630 6803702 -155796228 + L3 LINE CR1 1502 1575 -2 2030 127 19 6 chrX 6804439 6804753 -155795177 - L1MA10 LINE L1 -1 6333 6016 905 210 27 0 chrX 6805007 6805193 -155794737 - MER20 DNA MER1_type 0 219 29 414 311 152 7 chrX 6806225 6806495 -155793435 + L1ME3 LINE L1 5812 6120 -42 2231 185 70 8 chrX 6806791 6807155 -155792775 + L1MA8 LINE L1 5773 6176 -115 252 0 0 0 chrX 6807155 6807183 -155792747 + (CA)n Simple_repeat Simple_repeat 1 28 0 2231 185 70 8 chrX 6807183 6807304 -155792626 + L1MA8 LINE L1 6176 6288 -3 1677 172 0 7 chrX 6807334 6807625 -155792305 - AluSx SINE Alu -23 289 1 1983 99 13 40 chrX 6808214 6808516 -155791414 - L1PA16 LINE L1 -2 6164 5871 249 139 0 0 chrX 6808517 6808560 -155791370 + (T)n Simple_repeat Simple_repeat 1 43 0 394 239 43 34 chrX 6809136 6809253 -155790677 + MIR3 SINE MIR 12 129 -79 219 36 0 0 chrX 6809258 6809286 -155790644 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 2352 94 3 14 chrX 6859489 6859786 -155740144 + AluSp SINE Alu 1 294 -19 269 198 0 172 chrX 6860766 6860882 -155739048 + 5S rRNA rRNA 2 97 -24 321 188 0 75 chrX 6861810 6861890 -155738040 + 5S rRNA rRNA 2 75 -46 288 200 0 0 chrX 6862742 6862792 -155737138 + 5S rRNA rRNA 2 51 -70 315 190 0 172 chrX 6863672 6863788 -155736142 + 5S rRNA rRNA 2 97 -24 305 190 0 172 chrX 6864604 6864720 -155735210 + 5S rRNA rRNA 2 97 -24 284 198 0 172 chrX 6865535 6865651 -155734279 + 5S rRNA rRNA 2 97 -24 333 188 0 75 chrX 6866579 6866659 -155733271 + 5S rRNA rRNA 2 75 -46 1656 189 3 0 chrX 6867498 6867795 -155732135 - AluJb SINE Alu -14 298 1 809 302 127 18 chrX 6867799 6868289 -155731641 - HAL1 LINE L1 -351 2156 1614 1245 171 89 37 chrX 6868538 6868807 -155731123 - AluJb SINE Alu -29 283 1 2508 51 0 3 chrX 6868818 6869130 -155730800 - AluY SINE Alu 0 311 1 792 250 70 4 chrX 6869138 6869366 -155730564 - MER33 DNA MER1_type -47 277 35 836 168 0 7 chrX 6869889 6870032 -155729898 + FLAM_C SINE Alu 2 143 0 232 292 0 14 chrX 6870190 6870262 -155729668 + CT-rich Low_complexity Low_complexity 1 71 0 506 255 27 34 chrX 6870376 6870525 -155729405 - MIR SINE MIR -12 250 103 2399 70 0 0 chrX 6871967 6872268 -155727662 + AluY SINE Alu 1 301 -10 1293 151 9 9 chrX 6872654 6872872 -155727058 + AluJo SINE Alu 1 218 -94 287 167 0 33 chrX 6872874 6872934 -155726996 + AluJo SINE Alu 86 143 -159 552 190 51 118 chrX 6873060 6873255 -155726675 - L1M3 LINE L1 -550 5630 5449 831 195 0 7 chrX 6873925 6874074 -155725856 + AluJo SINE Alu 2 149 -163 1526 183 15 0 chrX 6874077 6874350 -155725580 + AluJb SINE Alu 18 294 -18 2016 223 35 68 chrX 6874401 6875006 -155724924 + L1ME1 LINE L1 5462 6046 -120 2595 145 20 86 chrX 6875007 6875251 -155724679 + MLT1D LTR MaLR 2 260 -245 1928 153 45 70 chrX 6875251 6875694 -155724236 - MSTB1 LTR MaLR 0 432 1 2595 145 20 86 chrX 6875694 6875920 -155724010 + MLT1D LTR MaLR 260 435 -70 587 197 354 36 chrX 6875920 6876039 -155723891 + AluJo SINE Alu 2 82 -220 2236 99 0 6 chrX 6876039 6876353 -155723577 + AluSx SINE Alu 1 312 0 587 197 354 36 chrX 6876353 6876456 -155723474 + AluJo SINE Alu 82 295 -7 2595 145 20 86 chrX 6876456 6876522 -155723408 + MLT1D LTR MaLR 435 504 -1 367 214 34 26 chrX 6876532 6876649 -155723281 + L1MA10 LINE L1 6210 6327 -7 1693 110 18 28 chrX 6876662 6876944 -155722986 - AluSx SINE Alu -13 299 21 1032 244 57 37 chrX 6877289 6877642 -155722288 + MLT1D LTR MaLR 1 360 -145 694 160 17 33 chrX 6877646 6877827 -155722103 + CT-rich Low_complexity Low_complexity 3 180 0 1758 171 3 3 chrX 6877833 6878143 -155721787 - AluJo SINE Alu -2 310 1 885 152 0 40 chrX 6878145 6878181 -155721749 + MLT1D LTR MaLR 357 393 -112 1922 181 72 84 chrX 6878181 6878220 -155721710 - MLT2B1 LTR ERVL 0 520 482 354 45 0 0 chrX 6878220 6878264 -155721666 + (TA)n Simple_repeat Simple_repeat 1 44 0 1922 181 72 84 chrX 6878264 6878749 -155721181 - MLT2B1 LTR ERVL -38 482 2 885 152 0 40 chrX 6878749 6878863 -155721067 + MLT1D LTR MaLR 393 501 -4 186 263 24 71 chrX 6878866 6878993 -155720937 + MIR SINE MIR 99 216 -46 481 146 10 10 chrX 6879222 6879325 -155720605 - MER96B DNA MER1_type? -246 171 69 1177 143 5 24 chrX 6879334 6879364 -155720566 + AluJb SINE Alu 106 135 -177 2041 91 0 11 chrX 6879364 6879701 -155720229 + AluSx SINE Alu 1 334 0 1177 143 5 24 chrX 6879701 6879878 -155720052 + AluJb SINE Alu 135 310 -2 594 254 62 18 chrX 6879937 6880161 -155719769 + Charlie4a DNA MER1_type 244 477 -31 1874 142 13 0 chrX 6880228 6880531 -155719399 - AluJb SINE Alu -5 307 1 2026 138 97 17 chrX 6880723 6881084 -155718846 - MLT1B LTR MaLR 0 390 1 2154 96 3 0 chrX 6881844 6882137 -155717793 + AluSx SINE Alu 1 294 -18 1827 155 0 37 chrX 6882395 6882718 -155717212 - AluJo SINE Alu 0 312 2 5506 165 32 29 chrX 6882729 6883805 -155716125 - L1MC2 LINE L1 0 6344 5266 241 229 0 0 chrX 6883787 6883843 -155716087 - L1MC4 LINE L1 -1333 6709 6653 * 339 25 0 0 chrX 6883843 6883883 -155716047 + (CA)n Simple_repeat Simple_repeat 2 41 0 490 101 14 0 chrX 6883898 6883967 -155715963 - AluJb SINE Alu -30 282 213 1558 208 72 24 chrX 6883993 6884411 -155715519 - L1MC2 LINE L1 -877 5269 4832 2242 74 13 10 chrX 6885738 6886049 -155713881 + AluSx SINE Alu 1 312 0 204 40 0 0 chrX 6887251 6887276 -155712654 + (CCG)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chrX 6887323 6887347 -155712583 + GC_rich Low_complexity Low_complexity 1 24 0 34 65 0 0 chrX 6887408 6887470 -155712460 + GC_rich Low_complexity Low_complexity 1 62 0 25 0 0 0 chrX 6887526 6887551 -155712379 + GC_rich Low_complexity Low_complexity 1 25 0 1958 95 7 7 chrX 6888745 6889029 -155710901 + AluSq SINE Alu 19 302 -11 2227 64 3 32 chrX 6889102 6889414 -155710516 + AluY SINE Alu 1 303 -8 448 204 49 49 chrX 6889922 6890064 -155709866 - LTR33 LTR ERVL 0 521 380 436 226 13 0 chrX 6890132 6890224 -155709706 + MLT1I LTR MaLR 60 154 -266 2523 55 0 0 chrX 6890224 6890534 -155709396 - AluY SINE Alu -1 310 1 322 302 12 0 chrX 6891522 6891608 -155708322 + GA-rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chrX 6892287 6892310 -155707620 + AT_rich Low_complexity Low_complexity 1 23 0 457 255 20 7 chrX 6892347 6892496 -155707434 - HAL1 LINE L1 -72 2435 2285 1164 208 99 70 chrX 6892600 6893085 -155706845 + L1MC5 LINE L1 7043 7541 -420 318 222 32 79 chrX 6893162 6893288 -155706642 + L1ME3A LINE L1 5962 6081 -89 1520 161 44 17 chrX 6893342 6893640 -155706290 - AluJo SINE Alu 0 312 7 2089 72 58 3 chrX 6894153 6894279 -155705651 + AluSc SINE Alu 1 119 -190 2643 60 12 0 chrX 6894279 6894613 -155705317 + L1PA7 LINE L1 5817 6154 0 2089 72 58 3 chrX 6894613 6894778 -155705152 + AluSc SINE Alu 119 308 -1 398 308 48 56 chrX 6895180 6895430 -155704500 + HERV16 LTR ERVL 402 649 -4347 195 42 0 0 chrX 6896829 6896853 -155703077 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 190 0 32 32 chrX 6897511 6897542 -155702388 + (TA)n Simple_repeat Simple_repeat 1 31 0 2210 90 3 3 chrX 6900267 6900567 -155699363 + AluSc SINE Alu 1 300 -9 1643 136 16 63 chrX 6900896 6901213 -155698717 - AluJo SINE Alu -10 302 1 793 236 22 6 chrX 6901419 6901597 -155698333 + MER5A DNA MER1_type 9 189 0 16078 112 14 17 chrX 6901714 6904104 -155695826 + Tigger1 DNA MER2_type 30 2412 -6 317 269 171 16 chrX 6904251 6904496 -155695434 + L1ME4a LINE L1 5757 6039 -82 1598 151 105 44 chrX 6905358 6905702 -155694228 - MLT1A1 LTR MaLR 0 365 1 219 283 179 55 chrX 6906081 6906226 -155693704 - MIR SINE MIR -12 250 88 220 291 128 51 chrX 6906724 6906841 -155693089 - MER5B DNA MER1_type -23 155 30 255 229 59 29 chrX 6907597 6907767 -155692163 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 * 349 249 34 17 chrX 6907721 6907898 -155692032 + (TA)n Simple_repeat Simple_repeat 1 180 0 1490 104 0 5 chrX 6907942 6908154 -155691776 + AluSg/x SINE Alu 87 297 -15 2541 43 0 0 chrX 6908233 6908537 -155691393 + AluY SINE Alu 1 304 -7 355 301 157 31 chrX 6909184 6909413 -155690517 + L2 LINE L2 3056 3313 0 1338 219 50 7 chrX 6909950 6910252 -155689678 - MER58B DNA MER1_type -18 323 9 256 302 47 9 chrX 6910617 6910723 -155689207 + L2 LINE L2 3156 3265 -7 1964 130 0 7 chrX 6911000 6911284 -155688646 + AluSx SINE Alu 1 282 -30 259 203 95 14 chrX 6911941 6912015 -155687915 + MLT1F LTR MaLR 1 80 -574 1767 223 126 27 chrX 6912298 6912855 -155687075 - MLT1E3 LTR MaLR -5 619 8 639 270 39 28 chrX 6913087 6913265 -155686665 + MER5A DNA MER1_type 4 183 -6 237 269 220 43 chrX 6913792 6913933 -155685997 + MIR SINE MIR 2 167 -95 1786 174 7 20 chrX 6913939 6914288 -155685642 + L1MB8 LINE L1 5263 5608 -566 1650 199 46 9 chrX 6914294 6914640 -155685290 - MLT1A1 LTR MaLR -6 359 1 2181 176 134 12 chrX 6914640 6915140 -155684790 + L1MB8 LINE L1 5603 6163 -15 3869 156 9 3 chrX 6915238 6915871 -155684059 + L1MB3 LINE L1 5544 6180 -3 1320 204 85 27 chrX 6917143 6917472 -155682458 + MLT1F LTR MaLR 193 540 -2 198 245 0 38 chrX 6917699 6917752 -155682178 + MIR SINE MIR 25 75 -133 484 243 5 19 chrX 6917892 6918078 -155681852 - MLT1E LTR MaLR -7 560 331 722 217 39 78 chrX 6918080 6918310 -155681620 - MLT1E LTR MaLR -370 223 3 551 221 0 10 chrX 6918348 6918452 -155681478 + MIR SINE MIR 6 108 -154 27 0 0 0 chrX 6919087 6919114 -155680816 + AT_rich Low_complexity Low_complexity 1 27 0 530 306 45 25 chrX 6919154 6919353 -155680577 + MIR SINE MIR 46 248 -14 271 231 130 59 chrX 6919501 6919670 -155680260 + MLT1H LTR MaLR 95 275 -274 536 243 28 0 chrX 6920106 6920250 -155679680 - L1MD2 LINE L1 0 6359 6212 481 296 58 17 chrX 6920296 6920468 -155679462 + MIR SINE MIR 72 250 -12 2418 262 67 39 chrX 6920615 6921543 -155678387 + HAL1b LINE L1 334 1293 -55 243 0 0 0 chrX 6921543 6921570 -155678360 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2418 262 67 39 chrX 6921570 6921628 -155678302 + HAL1b LINE L1 1293 1348 0 201 39 0 0 chrX 6922882 6922908 -155677022 + (TG)n Simple_repeat Simple_repeat 2 27 0 2579 66 0 0 chrX 6923123 6923427 -155676503 + AluY SINE Alu 1 304 -7 956 228 29 0 chrX 6924641 6924847 -155675083 - MER20 DNA MER1_type 0 219 8 467 319 24 24 chrX 6924855 6925065 -155674865 + LTR16B LTR ERVL 197 406 -58 4945 129 39 14 chrX 6925115 6925877 -155674053 - MER41-int LTR ERV1 -3115 2831 2051 1345 152 0 15 chrX 6925878 6926125 -155673805 - AluJb SINE Alu 0 327 84 767 233 7 0 chrX 6926125 6926275 -155673655 - MER5A DNA MER1_type -38 151 1 315 305 64 35 chrX 6926358 6926499 -155673431 - MIR3 SINE MIR -27 181 37 23 0 0 0 chrX 6927256 6927279 -155672651 + AT_rich Low_complexity Low_complexity 1 23 0 868 321 25 101 chrX 6928574 6929184 -155670746 - Tigger8 DNA MER2_type -6 660 110 4186 33 0 0 chrX 6929184 6929643 -155670287 - L1PA6 LINE L1 -13 6141 5683 868 321 25 101 chrX 6929643 6929745 -155670185 - Tigger8 DNA MER2_type -556 110 2 959 174 43 22 chrX 6930181 6930365 -155669565 - MER20 DNA MER1_type 0 219 32 427 313 16 11 chrX 6930786 6930968 -155668962 + L1ME4a LINE L1 5726 5908 -213 1637 184 16 29 chrX 6932147 6932463 -155667467 + AluJo SINE Alu 1 312 0 278 326 31 0 chrX 6932535 6932633 -155667297 + MIR3 SINE MIR 108 208 0 314 374 108 28 chrX 6934337 6934586 -155665344 + L2 LINE L2 2976 3244 -28 424 289 46 33 chrX 6934978 6935130 -155664800 + MIR SINE MIR 4 157 -105 2558 196 10 6 chrX 6935462 6935963 -155663967 + L1MD3 LINE L1 7366 7868 -127 1786 136 72 0 chrX 6936422 6936714 -155663216 - AluSx SINE Alu 0 311 1 191 294 164 34 chrX 6936883 6937029 -155662901 + MIR SINE MIR 47 211 -51 279 0 0 0 chrX 6937430 6937461 -155662469 + (TG)n Simple_repeat Simple_repeat 1 31 0 495 267 50 22 chrX 6937578 6937758 -155662172 + L1MC4 LINE L1 7356 7540 -502 898 204 32 16 chrX 6937758 6937944 -155661986 - MER20 DNA MER1_type 0 219 31 186 43 0 0 chrX 6938353 6938376 -155661554 + (T)n Simple_repeat Simple_repeat 1 23 0 990 114 15 0 chrX 6938438 6938569 -155661361 + FLAM_C SINE Alu 1 133 0 1019 139 0 6 chrX 6939175 6939333 -155660597 + L1MA5A LINE L1 6134 6290 -7 21 36 0 0 chrX 6939333 6939361 -155660569 + AT_rich Low_complexity Low_complexity 1 28 0 853 133 0 0 chrX 6939372 6939492 -155660438 - FRAM SINE Alu -20 156 37 943 122 0 10 chrX 6940586 6940770 -155659160 - AluJb SINE Alu -54 258 1 337 234 170 28 chrX 6940899 6941040 -155658890 + MER5A DNA MER1_type 26 186 -3 661 249 57 24 chrX 6942503 6942712 -155657218 + MIR SINE MIR 23 238 -24 986 210 119 32 chrX 6942719 6943091 -155656839 - MLT1C LTR MaLR -35 432 13 1929 268 37 54 chrX 6943179 6944094 -155655836 - L1M4 LINE L1 -2576 3570 2671 240 292 26 0 chrX 6944671 6944784 -155655146 + (TA)n Simple_repeat Simple_repeat 1 116 0 212 193 46 28 chrX 6944746 6944855 -155655075 + (TTATA)n Simple_repeat Simple_repeat 2 112 0 * 22 0 0 0 chrX 6944876 6944898 -155655032 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 22 17 chrX 6944902 6945134 -155654796 + (TA)n Simple_repeat Simple_repeat 1 233 0 22 0 0 0 chrX 6945134 6945156 -155654774 + AT_rich Low_complexity Low_complexity 1 22 0 323 152 217 43 chrX 6945248 6945340 -155654590 + ORSL DNA AcHobo 161 268 -7 1710 121 118 7 chrX 6946023 6946295 -155653635 + AluJo SINE Alu 1 302 -10 2030 142 0 7 chrX 6946408 6946704 -155653226 - AluSx SINE Alu -18 294 1 951 283 51 20 chrX 6946932 6947324 -155652606 + L1ME1 LINE L1 4911 5314 -832 1236 237 15 4 chrX 6947324 6947594 -155652336 - AluJo SINE Alu -2 310 38 1917 203 116 51 chrX 6947594 6947769 -155652161 + L1ME1 LINE L1 5320 5482 -684 2112 127 7 7 chrX 6947769 6948077 -155651853 + AluJb SINE Alu 1 308 -4 1917 203 116 51 chrX 6948077 6948488 -155651442 + L1ME1 LINE L1 5482 5944 -222 578 172 43 17 chrX 6948493 6948609 -155651321 + MER45A DNA AcHobo 60 178 0 2030 123 0 0 chrX 6949967 6950244 -155649686 - AluSx SINE Alu -35 277 1 252 0 0 0 chrX 6950600 6950628 -155649302 + (TG)n Simple_repeat Simple_repeat 2 29 0 1256 276 131 16 chrX 6950851 6951278 -155648652 - MLT1G1 LTR MaLR -73 522 47 190 305 55 70 chrX 6952707 6952835 -155647095 - L2 LINE L2 -1 3312 3187 765 256 39 62 chrX 6953162 6953430 -155646500 + L1ME3 LINE L1 5862 6124 -38 1499 172 15 8 chrX 6953430 6953697 -155646233 + AluJb SINE Alu 1 269 -43 765 256 39 62 chrX 6953697 6953736 -155646194 + L1ME3 LINE L1 6124 6162 0 7189 194 53 77 chrX 6953794 6955834 -155644096 + L1MC4a LINE L1 5817 7808 0 213 179 0 0 chrX 6956015 6956054 -155643876 - MIR SINE MIR -108 154 116 224 264 11 55 chrX 6956191 6956282 -155643648 + GA-rich Low_complexity Low_complexity 4 90 0 446 131 9 37 chrX 6956644 6956751 -155643179 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 1809 140 7 4 chrX 6956929 6957200 -155642730 - AluJo SINE Alu -17 295 24 529 289 128 38 chrX 6957203 6957376 -155642554 - L2 LINE L2 -12 3301 3145 1476 114 274 0 chrX 6957376 6957613 -155642317 + AluSx SINE Alu 1 302 0 529 289 128 38 chrX 6957613 6957910 -155642020 - L2 LINE L2 -168 3145 2791 940 231 15 0 chrX 6959218 6959417 -155640513 - L1MC4a LINE L1 -960 6848 6647 2633 222 1 39 chrX 6959717 6960366 -155639564 - L1M4 LINE L1 -1101 5045 4421 364 280 7 53 chrX 6961228 6961378 -155638552 - LTR16B LTR ERVL -321 143 1 2176 66 4 4 chrX 6961577 6961848 -155638082 - AluSq SINE Alu -7 306 36 325 232 40 111 chrX 6963037 6963235 -155636695 + L2 LINE L2 3118 3301 -12 3490 206 15 48 chrX 6964183 6964673 -155635257 + L1ME1 LINE L1 5343 5795 -371 1863 153 7 17 chrX 6964673 6964968 -155634962 + AluJo SINE Alu 1 292 -20 3490 206 15 48 chrX 6964968 6965325 -155634605 + L1ME1 LINE L1 5795 6162 -4 738 303 71 29 chrX 6965462 6965842 -155634088 - Charlie7 DNA MER1_type -1923 689 294 1597 141 23 19 chrX 6965986 6966249 -155633681 - AluJo SINE Alu -6 306 43 2289 115 0 3 chrX 6966259 6966572 -155633358 - AluSx SINE Alu 0 312 1 1719 174 0 14 chrX 6967139 6967432 -155632498 + AluJb SINE Alu 12 300 -12 864 201 34 0 chrX 6967565 6967744 -155632186 - MER20 DNA MER1_type -1 218 34 702 126 0 0 chrX 6967989 6968092 -155631838 + AluSg/x SINE Alu 208 310 0 773 154 32 0 chrX 6968253 6968376 -155631554 + FLAM_C SINE Alu 2 128 -5 24 32 0 0 chrX 6968381 6968412 -155631518 + AT_rich Low_complexity Low_complexity 1 31 0 466 291 179 22 chrX 6968562 6968881 -155631049 - L2 LINE L2 -7 3265 2897 209 295 189 18 chrX 6969388 6969605 -155630325 - L2 LINE L2 -833 2481 2228 338 178 55 0 chrX 6969676 6969749 -155630181 - MER5A DNA MER1_type -110 79 3 422 288 20 0 chrX 6969943 6970089 -155629841 - MER104 DNA Tc2 -26 154 6 2279 107 3 0 chrX 6970471 6970769 -155629161 + AluSx SINE Alu 1 299 -13 845 90 14 14 chrX 6970773 6970917 -155629013 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 1806 136 15 0 chrX 6971029 6971302 -155628628 - L1PA15 LINE L1 0 6165 5889 267 226 50 0 chrX 6973011 6973101 -155626829 + MER5A DNA MER1_type 4 99 -90 716 267 52 9 chrX 6973155 6973365 -155626565 + MER58A DNA MER1_type 1 219 -5 420 144 62 33 chrX 6973429 6973920 -155626010 + GA-rich Low_complexity Low_complexity 1 505 0 200 179 27 54 chrX 6973936 6974048 -155625882 + GA-rich Low_complexity Low_complexity 1 109 0 2032 102 18 7 chrX 6974510 6974784 -155625146 + AluSg SINE Alu 2 278 -32 189 74 0 0 chrX 6974784 6974811 -155625119 + (GA)n Simple_repeat Simple_repeat 2 28 0 1580 149 29 40 chrX 6976001 6976276 -155623654 + AluJo SINE Alu 5 276 -36 739 172 0 22 chrX 6976622 6976756 -155623174 - MLT1C LTR MaLR 0 467 337 978 182 0 0 chrX 6976802 6976978 -155622952 - FRAM SINE Alu 0 176 1 1386 185 89 15 chrX 6976979 6977304 -155622626 - MLT1C LTR MaLR -115 352 4 191 287 0 46 chrX 6977734 6977821 -155622109 + L2 LINE L2 2871 2953 -319 2145 127 0 0 chrX 6977875 6978200 -155621730 + AluSx SINE Alu 2 312 0 266 299 0 0 chrX 6979659 6979726 -155620204 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 201 74 0 0 chrX 6981413 6981440 -155618490 + (TG)n Simple_repeat Simple_repeat 1 27 0 203 161 0 0 chrX 6981440 6981471 -155618459 + (CA)n Simple_repeat Simple_repeat 1 31 0 2541 176 12 16 chrX 6981986 6982470 -155617460 + L1MB5 LINE L1 5674 6155 -19 433 241 188 0 chrX 6982850 6982983 -155616947 + MER5A DNA MER1_type 7 164 -25 2200 120 3 7 chrX 6983392 6983693 -155616237 - AluSx SINE Alu -10 302 3 326 252 53 8 chrX 6983828 6983959 -155615971 - L2 LINE L2 -811 2503 2367 817 176 0 0 chrX 6983989 6984114 -155615816 + AluJ SINE Alu 1 125 -187 444 89 38 0 chrX 6984114 6984193 -155615737 + (TA)n Simple_repeat Simple_repeat 2 83 0 1168 148 23 0 chrX 6984193 6984369 -155615561 + AluJ SINE Alu 133 312 0 22 35 0 0 chrX 6984885 6984914 -155615016 + AT_rich Low_complexity Low_complexity 1 29 0 35 54 0 0 chrX 6984982 6985038 -155614892 + AT_rich Low_complexity Low_complexity 1 56 0 578 193 379 0 chrX 6985759 6985899 -155614031 + Tigger5 DNA MER2_type 1 193 -2130 339 237 0 13 chrX 6985901 6985977 -155613953 + Tigger5 DNA MER2_type 2248 2322 -1 616 299 22 9 chrX 6986097 6986321 -155613609 - MLT1J2 LTR MaLR -223 227 1 387 283 10 0 chrX 6986716 6986815 -155613115 + MER58A DNA MER1_type 1 100 -124 2060 138 3 0 chrX 6986820 6987109 -155612821 + AluJo SINE Alu 1 290 -22 21 36 0 0 chrX 6987109 6987137 -155612793 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 6988044 6988069 -155611861 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 6988467 6988489 -155611441 + AT_rich Low_complexity Low_complexity 1 22 0 487 208 57 78 chrX 6989837 6989887 -155610043 - MER5A DNA MER1_type 0 189 139 2122 145 0 0 chrX 6989887 6990197 -155609733 - AluJo SINE Alu -2 310 1 487 208 57 78 chrX 6990197 6990338 -155609592 - MER5A DNA MER1_type -50 139 2 1672 174 3 17 chrX 6990872 6991166 -155608764 + AluJo SINE Alu 1 290 -22 276 278 0 33 chrX 6991353 6991443 -155608487 + GA-rich Low_complexity Low_complexity 4 90 0 304 366 0 13 chrX 6991938 6992091 -155607839 + (CA)n Simple_repeat Simple_repeat 2 152 0 * 316 369 20 7 chrX 6991989 6992138 -155607792 + (CACG)n Simple_repeat Simple_repeat 4 154 0 * 331 273 56 28 chrX 6992100 6992243 -155607687 + (CATG)n Simple_repeat Simple_repeat 1 147 0 769 188 0 0 chrX 6994581 6994714 -155605216 + AluJb SINE Alu 2 134 -178 1751 172 30 0 chrX 6994721 6995056 -155604874 + AluJb SINE Alu 1 344 0 572 158 9 0 chrX 6995371 6995485 -155604445 + CT-rich Low_complexity Low_complexity 3 117 0 2266 155 25 59 chrX 6995674 6995970 -155603960 + Tigger2a DNA MER2_type 6 284 -2424 2059 133 0 7 chrX 6995970 6996272 -155603658 - AluJb SINE Alu -10 302 3 2266 155 25 59 chrX 6996272 6996419 -155603511 + Tigger2a DNA MER2_type 284 434 0 1231 207 29 42 chrX 6997073 6997382 -155602548 + MER33 DNA MER1_type 17 321 -3 1771 150 52 0 chrX 6997396 6997708 -155602222 - AluJb SINE Alu 0 326 1 215 156 0 22 chrX 6997753 6997798 -155602132 + MIR3 SINE MIR 111 154 -54 197 336 37 37 chrX 6997901 6998008 -155601922 + MIR SINE MIR 20 126 -136 1778 163 10 0 chrX 6999026 6999321 -155600609 + AluJo SINE Alu 1 298 -14 1894 159 3 34 chrX 6999561 6999881 -155600049 - AluJb SINE Alu 0 312 3 2037 106 10 36 chrX 6999912 7000215 -155599715 - AluSx SINE Alu -17 295 1 443 252 56 0 chrX 7000425 7000568 -155599362 - HAL1 LINE L1 -1234 1273 1123 400 307 24 54 chrX 7000623 7000789 -155599141 + LTR16C LTR ERVL 54 214 -277 1072 234 38 62 chrX 7000789 7001110 -155598820 - L1MD2 LINE L1 -289 5885 5580 25 0 0 0 chrX 7002021 7002046 -155597884 + AT_rich Low_complexity Low_complexity 1 25 0 1830 209 70 27 chrX 7003175 7003692 -155596238 + MLT1F LTR MaLR 4 542 0 1988 139 10 10 chrX 7004117 7004399 -155595531 + AluSx SINE Alu 1 285 -178 240 35 0 0 chrX 7004399 7004428 -155595502 + (GAGAA)n Simple_repeat Simple_repeat 2 30 0 1988 139 10 10 chrX 7004428 7004608 -155595322 + AluSx SINE Alu 284 463 0 631 112 11 0 chrX 7004801 7004890 -155595040 - AluJb SINE Alu -15 297 208 581 292 46 25 chrX 7005515 7005755 -155594175 - MIR SINE MIR -14 248 4 1762 132 28 60 chrX 7006207 7006525 -155593405 - AluJb SINE Alu -4 308 1 267 54 0 0 chrX 7006708 7006745 -155593185 + (CA)n Simple_repeat Simple_repeat 2 38 0 274 336 17 26 chrX 7007184 7007300 -155592630 - MIR3 SINE MIR -6 202 88 2321 65 0 14 chrX 7007529 7007820 -155592110 - AluY SINE Alu -13 298 12 1927 140 6 32 chrX 7009049 7009364 -155590566 + AluSx SINE Alu 3 309 -3 1841 143 59 3 chrX 7009498 7009785 -155590145 - AluJb SINE Alu -9 303 1 965 168 0 0 chrX 7009925 7010080 -155589850 - FRAM SINE Alu -21 155 1 201 291 13 25 chrX 7010085 7010164 -155589766 - MIR SINE MIR -108 154 77 2798 210 29 0 chrX 7010186 7010730 -155589200 + MLT1F1 LTR MaLR 6 565 -2 283 405 8 0 chrX 7010936 7011067 -155588863 + L2 LINE L2 3141 3272 0 789 118 41 145 chrX 7011832 7012053 -155587877 + MER3 DNA MER1_type 5 202 -7 1543 180 8 8 chrX 7012431 7012698 -155587232 + AluJo SINE Alu 1 267 -45 791 126 0 53 chrX 7012728 7012918 -155587012 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 287 186 17 0 chrX 7013194 7013253 -155586677 + L1ME3A LINE L1 5509 5568 -594 677 260 64 20 chrX 7013265 7013515 -155586415 + L1ME3A LINE L1 5632 5892 -278 1813 169 0 42 chrX 7013696 7014003 -155585927 + AluJb SINE Alu 1 294 -18 1990 109 0 81 chrX 7014213 7014533 -155585397 - AluSx SINE Alu 0 312 19 2668 39 0 7 chrX 7014558 7014864 -155585066 - AluY SINE Alu -7 304 1 236 146 119 33 chrX 7014960 7015035 -155584895 - MLT1F1 LTR MaLR -29 538 453 2579 68 3 0 chrX 7015386 7015695 -155584235 - AluSp SINE Alu -3 310 1 320 0 0 24 chrX 7016502 7016543 -155583387 + (TC)n Simple_repeat Simple_repeat 2 41 0 359 285 74 20 chrX 7016761 7017044 -155582886 + Zaphod DNA AcHobo 388 4031 0 1169 112 0 12 chrX 7017514 7017683 -155582247 + AluJb SINE Alu 1 167 -145 208 262 0 119 chrX 7018181 7018265 -155581665 + L2 LINE L2 3240 3313 0 323 307 80 59 chrX 7018408 7018831 -155581099 - MLT1K LTR MaLR -8 580 149 536 263 34 22 chrX 7019153 7019332 -155580598 - MER58A DNA MER1_type -18 206 26 831 216 11 11 chrX 7019510 7019686 -155580244 + FRAM SINE Alu 1 176 0 3136 170 116 10 chrX 7019701 7020279 -155579651 + MER44D DNA MER2_type 1 639 -66 701 193 0 0 chrX 7020284 7020403 -155579527 + FLAM_C SINE Alu 3 121 -12 25 21 0 43 chrX 7020406 7020424 -155579506 + AT_rich Low_complexity Low_complexity 1 18 -27 2073 103 3 3 chrX 7020424 7020715 -155579215 - AluSx SINE Alu -21 291 1 25 21 0 43 chrX 7020715 7020743 -155579187 + AT_rich Low_complexity Low_complexity 18 45 0 619 187 0 19 chrX 7020743 7020850 -155579080 + MER44D DNA MER2_type 628 604 -1 2235 93 3 0 chrX 7021329 7021639 -155578291 + AluSx SINE Alu 1 311 -1 2115 93 3 3 chrX 7022163 7022452 -155577478 + AluSx SINE Alu 1 289 -23 1601 148 40 7 chrX 7022658 7022956 -155576974 - AluJb SINE Alu -4 308 1 2256 75 0 31 chrX 7023853 7024171 -155575759 - AluY SINE Alu -3 308 1 2139 92 0 0 chrX 7024173 7024455 -155575475 - AluSx SINE Alu -30 282 1 375 244 0 0 chrX 7024461 7024547 -155575383 + L1MC4a LINE L1 7472 7557 -251 302 160 0 0 chrX 7024768 7024818 -155575112 + MER58 DNA MER1_type 174 223 -118 2223 109 0 0 chrX 7025180 7025491 -155574439 - AluSx SINE Alu -1 311 1 180 0 0 0 chrX 7025493 7025513 -155574417 + (T)n Simple_repeat Simple_repeat 1 20 0 237 224 0 0 chrX 7025847 7025896 -155574034 + MLT1I LTR MaLR 85 133 -276 229 213 131 0 chrX 7026023 7026084 -155573846 + MLT1I LTR MaLR 341 409 0 1903 147 98 0 chrX 7026821 7027148 -155572782 + MLT1A1 LTR MaLR 3 361 -4 232 269 32 11 chrX 7027453 7027546 -155572384 + (CA)n Simple_repeat Simple_repeat 2 96 0 300 53 0 0 chrX 7027946 7027984 -155571946 + (TG)n Simple_repeat Simple_repeat 2 39 0 477 270 137 63 chrX 7028048 7028577 -155571353 + L1MC4 LINE L1 6959 7448 -594 1888 125 4 0 chrX 7028577 7028856 -155571074 + AluJb SINE Alu 4 283 -29 201 39 0 0 chrX 7028856 7028882 -155571048 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 477 270 137 63 chrX 7028882 7029044 -155570886 + L1MC4 LINE L1 7447 7702 -340 536 264 8 0 chrX 7029393 7029522 -155570408 - L1PB4 LINE L1 -76 6080 5951 221 274 88 10 chrX 7029853 7029955 -155569975 + MIR SINE MIR 153 262 0 820 158 0 0 chrX 7030605 7030725 -155569205 + FLAM_C SINE Alu 2 121 -22 1029 170 0 0 chrX 7030892 7031057 -155568873 - FRAM SINE Alu -1 165 1 650 251 138 0 chrX 7031449 7031644 -155568286 + MER58A DNA MER1_type 1 222 -2 * 908 204 63 12 chrX 7031643 7031898 -155568032 - MER33 DNA MER1_type 0 324 57 386 240 0 10 chrX 7032041 7032137 -155567793 - MER53 DNA DNA -72 117 23 2134 131 0 0 chrX 7032363 7032675 -155567255 + AluSx SINE Alu 1 312 0 1772 180 0 0 chrX 7032950 7033255 -155566675 + AluSx SINE Alu 1 305 -7 956 171 12 0 chrX 7034418 7034582 -155565348 + AluJb SINE Alu 136 301 -11 1922 144 0 0 chrX 7034631 7034929 -155565001 - AluSx SINE Alu -14 298 1 620 91 0 0 chrX 7035015 7035103 -155564827 + L1MB4 LINE L1 6093 6180 0 227 307 26 44 chrX 7035899 7036013 -155563917 - L2 LINE L2 -491 2823 2712 1706 196 37 64 chrX 7036023 7036478 -155563452 + MLT1C LTR MaLR 25 467 0 314 319 22 44 chrX 7036478 7036613 -155563317 - L2 LINE L2 -587 2727 2596 238 383 126 19 chrX 7036881 7037142 -155562788 - L2 LINE L2 -1919 1395 1107 404 245 56 47 chrX 7037251 7037433 -155562497 + L1ME3A LINE L1 5771 5957 -217 189 0 0 0 chrX 7037699 7037720 -155562210 + (TA)n Simple_repeat Simple_repeat 2 22 0 2201 88 13 0 chrX 7037733 7038038 -155561892 - AluSp SINE Alu -4 309 1 869 95 20 7 chrX 7038136 7038284 -155561646 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 473 304 164 68 chrX 7038287 7038745 -155561185 - MLT1K LTR MaLR -75 513 12 1906 29 4 12 chrX 7039128 7039368 -155560562 + AluY SINE Alu 73 310 -1 1578 189 105 6 chrX 7040394 7040728 -155559202 + MLT1B LTR MaLR 23 389 -1 224 261 14 14 chrX 7041926 7042064 -155557866 + CT-rich Low_complexity Low_complexity 4 141 0 * 374 219 13 32 chrX 7042035 7042360 -155557570 + C-rich Low_complexity Low_complexity 1 318 0 270 81 0 0 chrX 7042464 7042501 -155557429 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 29 28 0 0 chrX 7042590 7042626 -155557304 + GC_rich Low_complexity Low_complexity 1 36 0 376 296 17 34 chrX 7043381 7043560 -155556370 - L1ME4a LINE L1 -192 5929 5754 934 151 0 0 chrX 7043839 7043985 -155555945 + AluJb SINE Alu 167 312 0 2139 119 0 0 chrX 7044237 7044539 -155555391 - AluSx SINE Alu -10 302 1 1782 111 48 24 chrX 7044549 7044838 -155555092 - AluSc SINE Alu -13 296 1 2293 176 55 31 chrX 7045260 7045619 -155554311 + L1MB7 LINE L1 5647 6023 -161 1852 164 3 0 chrX 7045619 7045930 -155554000 - AluJb SINE Alu 0 312 1 2293 176 55 31 chrX 7045930 7046080 -155553850 + L1MB7 LINE L1 6023 6168 -16 728 186 0 8 chrX 7046128 7046257 -155553673 + AluJ SINE Alu 1 128 -174 2012 130 0 0 chrX 7046604 7046903 -155553027 + AluSx SINE Alu 2 300 -12 328 229 156 0 chrX 7046904 7047000 -155552930 + L1MCa LINE L1 1980 2090 -4336 509 256 29 70 chrX 7047126 7047368 -155552562 + MER112 DNA MER1_type 29 260 0 911 249 9 0 chrX 7047370 7047583 -155552347 + MER20 DNA MER1_type 1 215 -4 1939 124 3 16 chrX 7047615 7047922 -155552008 + AluSx SINE Alu 1 303 -9 1111 131 0 22 chrX 7047922 7048105 -155551825 + AluJ SINE Alu 134 312 0 498 325 0 0 chrX 7048462 7048613 -155551317 - MER5B DNA MER1_type -2 176 26 1184 140 48 34 chrX 7048909 7049116 -155550814 - MER20 DNA MER1_type -9 210 1 917 198 131 79 chrX 7049970 7050103 -155549827 - MER45C DNA AcHobo -630 951 826 907 205 0 0 chrX 7050103 7050264 -155549666 - FRAM SINE Alu -5 161 1 917 198 131 79 chrX 7050264 7050459 -155549471 - MER45C DNA AcHobo -755 826 606 613 226 161 6 chrX 7050440 7050608 -155549322 - MER45C DNA AcHobo -686 267 74 * 2417 69 3 0 chrX 7051376 7051681 -155548249 - AluSp SINE Alu -7 306 1 21 36 0 0 chrX 7052507 7052535 -155547395 + AT_rich Low_complexity Low_complexity 1 28 0 2297 99 0 3 chrX 7053373 7053686 -155546244 + AluSx SINE Alu 1 312 0 2089 112 0 0 chrX 7053806 7054110 -155545820 + AluSx SINE Alu 1 304 -8 2442 239 14 11 chrX 7054906 7055462 -155544468 - MER82 DNA MER2_type -93 560 3 351 294 162 15 chrX 7055713 7055849 -155544081 + MIR SINE MIR 40 195 -67 345 301 44 0 chrX 7056250 7056386 -155543544 + L1ME3A LINE L1 6002 6143 -27 186 133 0 0 chrX 7056655 7056685 -155543245 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2168 118 0 0 chrX 7057040 7057344 -155542586 + AluJb SINE Alu 1 304 -8 931 194 0 0 chrX 7058072 7058242 -155541688 + FRAM SINE Alu 1 169 -7 1116 172 0 0 chrX 7058244 7058424 -155541506 + MER46B DNA MER2_type 1 55 -181 1672 165 0 14 chrX 7058424 7058715 -155541215 + AluJo SINE Alu 1 287 -25 1220 134 23 14 chrX 7058728 7058944 -155540986 + MER46B DNA MER2_type 19 236 0 21 0 0 0 chrX 7059425 7059446 -155540484 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 7059749 7059790 -155540140 + (TG)n Simple_repeat Simple_repeat 2 42 0 1655 104 0 0 chrX 7059790 7060010 -155539920 - AluSg/x SINE Alu -27 285 66 955 148 0 37 chrX 7060010 7060172 -155539758 - MER20 DNA MER1_type -37 182 27 1658 147 0 64 chrX 7060316 7060628 -155539302 + AluJb SINE Alu 9 300 -12 2346 93 0 0 chrX 7061039 7061349 -155538581 + AluSx SINE Alu 1 310 -2 2037 143 93 25 chrX 7061406 7061805 -155538125 + MSTB LTR MaLR 1 426 0 1416 148 31 68 chrX 7061829 7062153 -155537777 + AluJo SINE Alu 1 312 0 599 336 63 41 chrX 7062442 7062955 -155536975 - L2 LINE L2 -2 3270 2748 2038 126 0 0 chrX 7062959 7063253 -155536677 - AluJo SINE Alu -18 294 1 239 264 56 42 chrX 7063273 7063345 -155536585 - MLT1D LTR MaLR -432 73 1 2237 97 0 0 chrX 7063694 7063992 -155535938 + AluSx SINE Alu 1 298 -14 1310 262 64 68 chrX 7064109 7064354 -155535576 - L1MC4 LINE L1 -143 7899 7654 2078 120 0 0 chrX 7064354 7064653 -155535277 - AluSx SINE Alu -13 299 1 1310 262 64 68 chrX 7064653 7064744 -155535186 - L1MC4 LINE L1 -388 7654 7564 1661 164 7 23 chrX 7064744 7065054 -155534876 + AluJo SINE Alu 1 305 -7 2558 173 19 8 chrX 7065056 7065536 -155534394 - L1MB3 LINE L1 -10 6173 5689 1310 262 64 68 chrX 7065536 7065855 -155534075 - L1MC4 LINE L1 -479 7563 7243 328 274 0 0 chrX 7066324 7066408 -155533522 + MER34 LTR ERV1 1 84 -458 2596 150 55 9 chrX 7066421 7066873 -155533057 + LTR29 LTR ERV1 137 609 -13 201 214 48 0 chrX 7066997 7067039 -155532891 + (TAGG)n Simple_repeat Simple_repeat 3 46 0 1585 149 7 18 chrX 7067174 7067455 -155532475 + AluJo SINE Alu 24 301 -11 380 350 36 0 chrX 7067458 7067598 -155532332 + L2 LINE L2 3164 3308 -5 2690 182 72 30 chrX 7067761 7068360 -155531570 + MLT1E3 LTR MaLR 1 624 0 1547 165 4 0 chrX 7068775 7069048 -155530882 + AluJo SINE Alu 38 311 -1 967 237 23 5 chrX 7069565 7069780 -155530150 + MER20 DNA MER1_type 1 219 0 2015 128 3 3 chrX 7071170 7071475 -155528455 - AluSx SINE Alu -7 305 1 214 257 69 109 chrX 7071502 7071603 -155528327 - L2 LINE L2 -16 3256 3160 822 167 0 7 chrX 7071678 7071822 -155528108 + FLAM_C SINE Alu 1 143 0 1806 148 7 13 chrX 7071825 7071960 -155527970 + AluSx SINE Alu 1 135 -177 2078 118 0 0 chrX 7071960 7072344 -155527586 + AluSx SINE Alu 1 312 0 1806 148 7 13 chrX 7072344 7072511 -155527419 + AluSx SINE Alu 135 301 -11 22 0 0 0 chrX 7072728 7072750 -155527180 + AT_rich Low_complexity Low_complexity 1 22 0 185 401 39 6 chrX 7072977 7073159 -155526771 - L2 LINE L2 -258 3014 2827 506 246 99 47 chrX 7073668 7073839 -155526091 + L1ME3 LINE L1 5969 6148 -14 193 393 0 0 chrX 7074011 7074067 -155525863 - L2 LINE L2 -219 3053 2998 1596 146 36 4 chrX 7074309 7074583 -155525347 - AluJb SINE Alu -29 283 1 187 321 58 29 chrX 7074598 7074735 -155525195 + MIR SINE MIR 74 214 -48 800 133 0 0 chrX 7075523 7075643 -155524287 + FLAM_C SINE Alu 1 120 -23 2799 109 26 9 chrX 7076173 7076594 -155523336 - MSTA LTR MaLR 0 428 1 6636 83 42 3 chrX 7076901 7077970 -155521960 - L1PA14 LINE L1 -1 6160 5079 1666 207 105 41 chrX 7077971 7078396 -155521534 - MLT1F LTR MaLR -27 515 54 1546 198 58 33 chrX 7078396 7078760 -155521170 - MLT1A2 LTR MaLR 0 374 2 1666 207 105 41 chrX 7078760 7078818 -155521112 - MLT1F LTR MaLR -488 54 1 349 313 54 27 chrX 7078886 7079048 -155520882 + MIR SINE MIR 1 170 -38 353 253 38 0 chrX 7079538 7079617 -155520313 + MIR SINE MIR 148 229 -33 921 203 18 53 chrX 7080366 7080593 -155519337 - MER20 DNA MER1_type 0 219 1 324 288 0 0 chrX 7080629 7080702 -155519228 - L2 LINE L2 -4 3268 3196 1360 160 23 105 chrX 7081114 7081458 -155518472 + AluYb8 SINE Alu 1 316 -2 411 233 338 0 chrX 7081616 7081749 -155518181 + MER5A DNA MER1_type 1 178 -11 2123 82 3 17 chrX 7081763 7082057 -155517873 + AluSc SINE Alu 6 295 -14 581 312 46 9 chrX 7083231 7083449 -155516481 - LTR67 LTR ERVL 0 557 332 1118 254 58 96 chrX 7083530 7083565 -155516365 + MLT1J LTR MaLR 20 55 -456 962 204 9 23 chrX 7083565 7083785 -155516145 + MER20 DNA MER1_type 1 217 -2 1118 254 58 96 chrX 7083785 7083957 -155515973 + MLT1J LTR MaLR 55 232 -279 1572 215 43 27 chrX 7083957 7084325 -155515605 - MLT1A2 LTR MaLR 0 374 1 1118 254 58 96 chrX 7084325 7084452 -155515478 + MLT1J LTR MaLR 232 362 -149 2492 35 0 6 chrX 7084452 7084764 -155515166 + AluY SINE Alu 1 310 -1 1118 254 58 96 chrX 7084764 7084926 -155515004 + MLT1J LTR MaLR 362 499 -12 1149 198 116 79 chrX 7085416 7085530 -155514400 + MER58B DNA MER1_type 1 109 -2311 1802 141 3 14 chrX 7085530 7085821 -155514109 - AluJb SINE Alu -24 288 1 1149 198 116 79 chrX 7085821 7086035 -155513895 + MER58B DNA MER1_type 109 341 0 249 197 13 145 chrX 7086198 7086274 -155513656 + MER45C DNA AcHobo 447 512 -441 286 293 13 0 chrX 7086280 7086355 -155513575 + MER45C DNA AcHobo 878 953 0 1704 219 28 0 chrX 7086571 7086927 -155513003 + LTR16C LTR ERVL 126 491 0 649 269 12 6 chrX 7088458 7088618 -155511312 + MLT1H LTR MaLR 386 546 -3 26 0 0 49 chrX 7088704 7088729 -155511201 + AT_rich Low_complexity Low_complexity 1 25 -14 2246 107 0 0 chrX 7088729 7089038 -155510892 + AluSx SINE Alu 1 309 -3 26 0 0 49 chrX 7089038 7089053 -155510877 + AT_rich Low_complexity Low_complexity 25 39 0 812 196 0 0 chrX 7089103 7089236 -155510694 + AluJb SINE Alu 2 134 -178 1997 248 72 19 chrX 7089238 7089887 -155510043 - L1ME2 LINE L1 -55 6109 5426 631 130 0 0 chrX 7090004 7090096 -155509834 - AluJ/FLAM SINE Alu -220 92 1 554 286 108 52 chrX 7090407 7090638 -155509292 - L2 LINE L2 0 3272 3029 1671 177 81 0 chrX 7090730 7091040 -155508890 + MER7A DNA MER2_type 14 346 0 3051 188 46 2 chrX 7091177 7091783 -155508147 + L1MB5 LINE L1 5541 6173 -1 1014 159 0 0 chrX 7091952 7092115 -155507815 + AluJb SINE Alu 138 300 -12 271 343 133 14 chrX 7092462 7092672 -155507258 - MIR SINE MIR -26 236 2 1557 147 9 69 chrX 7092761 7092903 -155507027 + AluJo SINE Alu 1 150 -162 2294 79 0 0 chrX 7092903 7093193 -155506737 + AluSx SINE Alu 1 290 -22 1557 147 9 69 chrX 7093193 7093369 -155506561 + AluJo SINE Alu 150 300 -12 1239 197 5 5 chrX 7093518 7093741 -155506189 - MER58A DNA MER1_type 0 224 2 1858 145 3 13 chrX 7093772 7094075 -155505855 - AluJo SINE Alu -6 306 7 1600 163 48 3 chrX 7094748 7095042 -155504888 - AluJb SINE Alu -5 307 1 1987 114 3 10 chrX 7095160 7095458 -155504472 - AluSq SINE Alu -17 296 1 2346 213 82 53 chrX 7095547 7095846 -155504084 - L1MD2 LINE L1 -2 6357 6068 2199 75 0 0 chrX 7095846 7096126 -155503804 + AluSx SINE Alu 27 306 -6 2346 213 82 53 chrX 7096126 7096543 -155503387 - L1MD2 LINE L1 -291 6068 5620 198 71 0 0 chrX 7096788 7096816 -155503114 + (GA)n Simple_repeat Simple_repeat 1 28 0 1784 113 6 73 chrX 7097156 7097484 -155502446 - AluJo SINE Alu -6 306 1 2346 35 3 0 chrX 7097669 7097976 -155501954 - AluY SINE Alu 0 308 1 2195 87 0 0 chrX 7098298 7098586 -155501344 + AluSg1 SINE Alu 1 288 -21 261 109 0 0 chrX 7098586 7098632 -155501298 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 2326 82 3 3 chrX 7098633 7098939 -155500991 + AluY SINE Alu 3 308 -3 231 191 0 0 chrX 7098943 7098985 -155500945 + L2 LINE L2 3268 3309 -4 224 329 161 7 chrX 7099058 7099195 -155500735 + MIR SINE MIR 3 160 -102 1173 181 191 61 chrX 7099202 7099610 -155500320 + MLT1C LTR MaLR 6 466 -1 814 313 23 32 chrX 7099791 7100136 -155499794 + MLT1L LTR MaLR 125 466 -149 279 270 0 0 chrX 7100243 7100306 -155499624 + MLT1K LTR MaLR 526 588 0 1992 115 0 0 chrX 7100407 7100686 -155499244 + AluSq SINE Alu 7 285 -28 1804 165 3 0 chrX 7100703 7101012 -155498918 + AluJo SINE Alu 1 310 -2 561 294 61 5 chrX 7101316 7101530 -155498400 + L1MC/D LINE L1 5543 5768 -2040 1709 141 3 50 chrX 7101670 7101798 -155498132 + 7SLRNA srpRNA srpRNA 20 152 -168 1996 125 0 0 chrX 7101798 7102095 -155497835 + AluSq SINE Alu 6 302 -11 360 0 0 0 chrX 7102096 7102136 -155497794 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1709 141 3 50 chrX 7102136 7102304 -155497626 + 7SLRNA srpRNA srpRNA 151 304 -16 24 0 0 0 chrX 7102304 7102328 -155497602 + AT_rich Low_complexity Low_complexity 1 24 0 338 247 0 0 chrX 7103771 7103848 -155496082 + 5S rRNA rRNA 7 83 -38 302 143 9 171 chrX 7104018 7104123 -155495807 + 5S rRNA rRNA 2 89 -32 321 160 0 0 chrX 7104949 7104999 -155494931 + 5S rRNA rRNA 2 51 -70 333 188 0 75 chrX 7105993 7106073 -155493857 + 5S rRNA rRNA 2 75 -46 321 160 0 0 chrX 7106925 7106975 -155492955 + 5S rRNA rRNA 2 51 -70 333 188 0 75 chrX 7107969 7108049 -155491881 + 5S rRNA rRNA 2 75 -46 300 180 0 0 chrX 7108901 7108951 -155490979 + 5S rRNA rRNA 2 51 -70 284 198 0 172 chrX 7109833 7109949 -155489981 + 5S rRNA rRNA 2 97 -24 333 188 0 75 chrX 7110876 7110956 -155488974 + 5S rRNA rRNA 2 75 -46 329 179 0 170 chrX 7111808 7111914 -155488016 + 5S rRNA rRNA 2 89 -32 333 188 0 75 chrX 7112852 7112932 -155486998 + 5S rRNA rRNA 2 75 -46 328 181 0 172 chrX 7113784 7113900 -155486030 + 5S rRNA rRNA 2 97 -24 260 228 0 76 chrX 7114830 7114909 -155485021 + 5S rRNA rRNA 3 75 -46 333 188 0 75 chrX 7115874 7115954 -155483976 + 5S rRNA rRNA 2 75 -46 768 154 0 15 chrX 7116577 7116707 -155483223 - AluJo SINE Alu -173 139 12 309 180 0 0 chrX 7117786 7117836 -155482094 + 5S rRNA rRNA 2 51 -70 330 181 0 172 chrX 7118718 7118834 -155481096 + 5S rRNA rRNA 2 97 -24 321 160 0 0 chrX 7119649 7119699 -155480231 + 5S rRNA rRNA 2 51 -70 533 42 14 0 chrX 7121445 7121517 -155478413 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 180 77 0 0 chrX 7121520 7121546 -155478384 + (GA)n Simple_repeat Simple_repeat 2 27 0 1632 173 15 0 chrX 7121548 7121819 -155478111 - AluJo SINE Alu -37 275 1 419 189 0 150 chrX 7122092 7122181 -155477749 - MER5B DNA MER1_type -41 137 71 2172 77 14 7 chrX 7122181 7122478 -155477452 - AluSq SINE Alu -14 299 1 419 189 0 150 chrX 7122478 7122515 -155477415 - MER5B DNA MER1_type -107 71 30 1246 161 169 0 chrX 7122679 7122940 -155476990 + AluSx SINE Alu 1 305 -7 643 209 209 0 chrX 7122944 7123097 -155476833 - MER5A DNA MER1_type -3 186 2 706 205 0 0 chrX 7123303 7123430 -155476500 + FRAM SINE Alu 4 130 -46 194 139 47 0 chrX 7123430 7123473 -155476457 + GA-rich Low_complexity Low_complexity 2 46 0 1383 226 174 22 chrX 7123956 7124455 -155475475 + MLT1E1 LTR MaLR 5 616 -38 22 0 0 0 chrX 7124456 7124478 -155475452 + AT_rich Low_complexity Low_complexity 1 22 0 1817 212 42 25 chrX 7124503 7124951 -155474979 - MLT2B1 LTR ERVL -64 456 1 2182 88 3 0 chrX 7125010 7125320 -155474610 - AluSp SINE Alu 0 311 1 1515 136 70 86 chrX 7125576 7125878 -155474052 - AluJb SINE Alu -15 297 1 352 276 9 19 chrX 7125880 7125985 -155473945 + MLT2B1 LTR ERVL 86 189 -331 431 197 0 0 chrX 7125993 7126069 -155473861 - AluS SINE Alu -235 78 3 1788 85 114 14 chrX 7126530 7126811 -155473119 + AluSg SINE Alu 2 310 0 725 231 27 43 chrX 7126851 7126916 -155473014 + MER5A DNA MER1_type 7 72 -117 2181 83 17 3 chrX 7126916 7127217 -155472713 + AluSx SINE Alu 1 305 -7 725 231 27 43 chrX 7127217 7127337 -155472593 + MER5A DNA MER1_type 72 189 0 275 335 97 0 chrX 7127528 7127683 -155472247 - MIR SINE MIR -13 249 80 368 206 65 0 chrX 7127705 7127797 -155472133 - MLT2B1 LTR ERVL -422 98 1 315 130 0 0 chrX 7128103 7128149 -155471781 - Alu SINE Alu -10 292 247 1169 249 134 22 chrX 7129072 7129084 -155470846 - MLT1E LTR MaLR 0 624 615 2240 159 10 8 chrX 7129084 7129473 -155470457 - MLT1B LTR MaLR 0 390 1 1169 249 134 22 chrX 7129473 7129685 -155470245 - MLT1E LTR MaLR -9 615 428 1623 185 0 30 chrX 7129685 7129987 -155469943 + AluJb SINE Alu 1 293 -19 1169 249 134 22 chrX 7129987 7130170 -155469760 - MLT1E LTR MaLR -196 428 267 2214 89 6 13 chrX 7130170 7130483 -155469447 + AluSx SINE Alu 1 311 -1 1169 249 134 22 chrX 7130483 7130556 -155469374 - MLT1E LTR MaLR -357 267 20 969 106 0 0 chrX 7131655 7131787 -155468143 + AluSg/x SINE Alu 154 285 -25 1934 161 17 17 chrX 7132599 7132953 -155466977 - L1MB5 LINE L1 0 6174 5821 24 32 0 0 chrX 7132953 7132984 -155466946 + AT_rich Low_complexity Low_complexity 1 31 0 209 180 120 0 chrX 7132991 7133041 -155466889 - L2 LINE L2 -1 3312 3257 2003 72 3 28 chrX 7134115 7134247 -155465683 + AluY SINE Alu 1 135 -172 198 0 0 0 chrX 7134247 7134269 -155465661 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2003 72 3 28 chrX 7134269 7134450 -155465480 + AluY SINE Alu 135 307 0 1693 144 11 0 chrX 7134525 7134839 -155465091 - AluJb SINE Alu 0 317 1 2250 76 0 7 chrX 7135764 7136068 -155463862 + AluSc SINE Alu 1 302 -7 509 120 0 0 chrX 7136884 7136959 -155462971 + U3 snRNA snRNA 13 87 -130 2178 90 3 0 chrX 7137441 7137729 -155462201 + AluSq SINE Alu 1 289 -24 319 254 15 142 chrX 7138008 7138213 -155461717 - MIR SINE MIR -54 208 30 859 206 110 77 chrX 7138509 7138833 -155461097 - MLT2C1 LTR ERVL -3 394 60 1842 219 13 44 chrX 7138833 7139307 -155460623 + MLT1C LTR MaLR 1 459 -8 245 234 31 16 chrX 7139313 7139377 -155460553 - MLT2C1 LTR ERVL -331 66 2 476 157 29 0 chrX 7139380 7139482 -155460448 + CT-rich Low_complexity Low_complexity 5 109 0 1712 166 3 3 chrX 7139555 7139856 -155460074 + AluJb SINE Alu 1 301 -11 1538 160 23 20 chrX 7140126 7140426 -155459504 - AluJo SINE Alu -11 301 1 1386 244 90 5 chrX 7140564 7140966 -155458964 - L1MD3 LINE L1 0 7995 7560 27 0 0 0 chrX 7142120 7142147 -155457783 + AT_rich Low_complexity Low_complexity 1 27 0 358 307 48 96 chrX 7142731 7143134 -155456796 - L1MEc LINE L1 -2792 3423 2118 309 155 14 113 chrX 7145081 7145152 -155454778 + MER20 DNA MER1_type 2 65 -154 268 264 75 19 chrX 7145385 7145491 -155454439 + MIR3 SINE MIR 43 154 -54 183 100 0 0 chrX 7145492 7145522 -155454408 + (TA)n Simple_repeat Simple_repeat 1 30 0 1201 169 4 30 chrX 7145636 7145867 -155454063 - AluJo SINE Alu -76 236 12 2014 103 27 0 chrX 7145920 7146221 -155453709 - AluSx SINE Alu -3 309 1 373 257 68 68 chrX 7146368 7146574 -155453356 - L1ME1 LINE L1 -4 6162 5957 1088 81 37 6 chrX 7146868 7147029 -155452901 - L1MA2 LINE L1 -4 6300 6135 1710 111 71 7 chrX 7147033 7147313 -155452617 - AluSx SINE Alu -14 298 1 2036 126 3 0 chrX 7147391 7147692 -155452238 - AluSq SINE Alu -11 302 1 1285 169 61 102 chrX 7149037 7149350 -155450580 - AluJo SINE Alu -2 300 1 2177 86 17 0 chrX 7149395 7149685 -155450245 + AluY SINE Alu 1 295 -16 23 0 0 0 chrX 7150965 7150988 -155448942 + AT_rich Low_complexity Low_complexity 1 23 0 2170 100 0 0 chrX 7151632 7151932 -155447998 - AluSx SINE Alu -12 300 1 1897 100 40 27 chrX 7151977 7152304 -155447626 - AluSx SINE Alu 0 312 1 814 247 28 13 chrX 7154412 7154664 -155445266 - L1MA10 LINE L1 0 6334 5926 284 114 0 65 chrX 7154818 7154864 -155445066 + MIR SINE MIR 115 158 -50 1727 147 102 30 chrX 7155166 7155527 -155444403 + LTR8A LTR ERV1 1 387 -340 7011 102 58 36 chrX 7155529 7155935 -155443995 + HUERS-P1 LTR ERV1 1919 2315 -2565 2054 85 41 0 chrX 7155935 7156225 -155443705 + AluSg SINE Alu 1 301 0 7011 102 58 36 chrX 7156225 7156697 -155443233 + HUERS-P1 LTR ERV1 2315 2775 -2105 243 0 0 0 chrX 7156697 7156724 -155443206 + (TG)n Simple_repeat Simple_repeat 2 28 0 2128 84 3 14 chrX 7156724 7157011 -155442919 - AluSp SINE Alu -28 285 2 7011 102 58 36 chrX 7157011 7157264 -155442666 + HUERS-P1 LTR ERV1 2774 3078 -1802 * 7611 150 59 49 chrX 7157263 7158988 -155440942 + HUERS-P1 LTR ERV1 3805 5790 -529 765 169 77 64 chrX 7158997 7159273 -155440657 + HUERS-P1 LTR ERV1 5914 6226 -105 691 243 24 18 chrX 7159351 7159520 -155440410 + HUERS-P1 LTR ERV1 6090 6259 -4 615 104 26 70 chrX 7159523 7159638 -155440292 + LTR8A LTR ERV1 1 110 -617 619 183 35 9 chrX 7159648 7159763 -155440167 + LTR8A LTR ERV1 610 727 0 567 222 58 48 chrX 7159763 7159935 -155439995 + MER20 DNA MER1_type 46 219 0 1323 238 49 46 chrX 7160705 7160776 -155439154 - L1ME1 LINE L1 -2 6160 6091 1575 121 111 35 chrX 7160776 7161065 -155438865 - AluJo SINE Alu -1 311 1 1323 238 49 46 chrX 7161065 7161493 -155438437 - L1ME1 LINE L1 -71 6091 5681 623 179 4 197 chrX 7161496 7161560 -155438370 - MER5A DNA MER1_type 0 189 114 1499 167 10 38 chrX 7161560 7161853 -155438077 + AluJo SINE Alu 3 287 -25 623 179 4 197 chrX 7161853 7162022 -155437908 - MER5A DNA MER1_type -75 114 1 26 0 0 0 chrX 7162657 7162683 -155437247 + AT_rich Low_complexity Low_complexity 1 26 0 2945 133 23 40 chrX 7162709 7162998 -155436932 + MER4B LTR ERV1 31 323 -456 1650 187 20 0 chrX 7162998 7163292 -155436638 - AluJb SINE Alu -12 300 1 2945 133 23 40 chrX 7163292 7163591 -155436339 + MER4B LTR ERV1 323 779 0 1549 188 63 12 chrX 7163892 7164227 -155435703 - L1MB7 LINE L1 0 6184 5833 2330 190 36 20 chrX 7164934 7165429 -155434501 - MLT1D LTR MaLR -2 503 1 201 156 0 0 chrX 7165596 7165628 -155434302 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 751 138 17 0 chrX 7165628 7165744 -155434186 - FLAM_C SINE Alu -15 118 1 310 118 224 0 chrX 7166184 7166269 -155433661 - MLT1I LTR MaLR -25 384 281 263 270 52 26 chrX 7166433 7166548 -155433382 - MLT1I LTR MaLR -375 174 57 1560 180 10 16 chrX 7166723 7167029 -155432901 - AluJo SINE Alu -8 304 1 948 172 37 42 chrX 7167077 7167292 -155432638 + MER20 DNA MER1_type 6 219 0 214 229 0 21 chrX 7167296 7167344 -155432586 + MER5A DNA MER1_type 140 186 -3 1801 149 0 13 chrX 7167734 7168036 -155431894 - AluJo SINE Alu -9 303 6 318 26 0 0 chrX 7168059 7168098 -155431832 + (TA)n Simple_repeat Simple_repeat 2 40 0 1120 144 0 0 chrX 7168098 7168265 -155431665 - AluJb SINE Alu -11 301 135 540 0 0 0 chrX 7169597 7169657 -155430273 + (TG)n Simple_repeat Simple_repeat 2 61 0 1515 168 7 34 chrX 7170238 7170558 -155429372 + AluJb SINE Alu 1 312 0 34 24 0 0 chrX 7171330 7171371 -155428559 + AT_rich Low_complexity Low_complexity 1 41 0 2250 226 127 3 chrX 7172215 7172796 -155427134 + MER82 DNA MER2_type 1 653 0 268 295 26 0 chrX 7173273 7173351 -155426579 - MER116 DNA Mariner 0 80 1 1943 148 0 0 chrX 7173885 7174190 -155425740 + AluJb SINE Alu 1 305 -7 346 148 0 0 chrX 7174443 7174497 -155425433 + AluJ/FLAM SINE Alu 39 92 -210 676 188 0 19 chrX 7174499 7174659 -155425271 + CT-rich Low_complexity Low_complexity 2 158 0 792 144 0 30 chrX 7174662 7174794 -155425136 - FLAM_C SINE Alu -5 128 1 2217 100 0 7 chrX 7176452 7176753 -155423177 + AluSq SINE Alu 1 299 -14 1878 144 26 7 chrX 7176761 7177067 -155422863 + AluJo SINE Alu 1 312 0 2189 101 0 3 chrX 7177073 7177371 -155422559 + AluSq SINE Alu 3 299 -14 953 223 14 18 chrX 7177569 7177789 -155422141 + MER20 DNA MER1_type 1 219 0 345 231 66 11 chrX 7177905 7177996 -155421934 + MIR SINE MIR 6 101 -161 1195 194 26 15 chrX 7178750 7179023 -155420907 + MER33 DNA MER1_type 2 277 -47 231 288 15 15 chrX 7179315 7179381 -155420549 - MIR SINE MIR -179 83 18 183 220 0 60 chrX 7179422 7179472 -155420458 + L2 LINE L2 3198 3244 -69 229 184 0 0 chrX 7179516 7179554 -155420376 + MSTD LTR MaLR 219 256 -140 * 378 243 29 29 chrX 7179549 7179755 -155420175 + MLT1A2 LTR MaLR 166 363 -65 23059 129 68 24 chrX 7179768 7185837 -155414093 + L1PA8A LINE L1 1 6425 -21 2044 57 89 14 chrX 7185864 7186144 -155413786 + AluY SINE Alu 1 301 -10 1962 142 0 3 chrX 7186241 7186544 -155413386 - AluJb SINE Alu -10 302 1 919 160 71 6 chrX 7186845 7187014 -155412916 + MER20 DNA MER1_type 40 219 0 656 181 0 97 chrX 7187292 7187338 -155412592 + MER58B DNA MER1_type 187 236 -2184 1995 138 44 99 chrX 7187338 7187774 -155412156 + MLT2D LTR ERVL 1 412 -2 656 181 0 97 chrX 7187774 7187882 -155412048 + MER58B DNA MER1_type 236 326 -15 1723 148 14 0 chrX 7188623 7188907 -155411023 - AluJb SINE Alu -14 298 11 231 129 0 0 chrX 7188909 7188940 -155410990 - AluJb SINE Alu -271 31 1 2082 87 33 3 chrX 7189257 7189557 -155410373 - AluSx SINE Alu -3 309 1 375 299 84 13 chrX 7190157 7190311 -155409619 + MIR SINE MIR 90 254 -8 1011 178 29 34 chrX 7190362 7190481 -155409449 + MER20 DNA MER1_type 2 121 -98 2052 157 99 20 chrX 7190481 7190876 -155409054 - MSTB LTR MaLR 0 426 1 1011 178 29 34 chrX 7190876 7190964 -155408966 + MER20 DNA MER1_type 121 208 -11 364 246 48 97 chrX 7191330 7191558 -155408372 - L1MD2 LINE L1 0 6359 6143 789 180 101 37 chrX 7192566 7192783 -155407147 + L1MB8 LINE L1 5948 6178 0 1742 128 42 23 chrX 7194581 7194887 -155405043 + AluJo SINE Alu 1 312 0 629 248 13 7 chrX 7194925 7195074 -155404856 + MER58B DNA MER1_type 174 323 -18 825 229 5 11 chrX 7195996 7196184 -155403746 - AluJo SINE Alu -5 307 121 1698 175 0 19 chrX 7197568 7197876 -155402054 + AluJo SINE Alu 1 302 -10 897 230 4 57 chrX 7198293 7198541 -155401389 + MER8 DNA MER2_type 1 235 -4 463 168 21 11 chrX 7198657 7198752 -155401178 + MER3 DNA MER1_type 65 160 -49 1852 149 3 7 chrX 7198768 7199077 -155400853 - AluJo SINE Alu -4 308 1 225 313 45 0 chrX 7200179 7200291 -155399639 + (CACGT)n Simple_repeat Simple_repeat 4 120 0 321 237 154 39 chrX 7200502 7200658 -155399272 - Charlie4 DNA MER1_type -5 1956 1783 2290 190 45 28 chrX 7200669 7200719 -155399211 - L1MB2 LINE L1 0 6171 6123 2421 81 0 0 chrX 7200719 7201026 -155398904 - AluSx SINE Alu -5 307 1 2290 190 45 28 chrX 7201026 7201485 -155398445 - L1MB2 LINE L1 -48 6123 5653 1584 145 0 0 chrX 7201504 7201752 -155398178 - AluJo SINE Alu -6 306 59 247 219 86 29 chrX 7201761 7201866 -155398064 - L2 LINE L2 -649 2665 2555 210 118 0 0 chrX 7202852 7202886 -155397044 + (TG)n Simple_repeat Simple_repeat 1 34 0 188 109 55 18 chrX 7202886 7202941 -155396989 + GA-rich Low_complexity Low_complexity 2 58 0 791 192 50 50 chrX 7203335 7203533 -155396397 - MER58B DNA MER1_type -4 337 140 245 238 48 24 chrX 7204249 7204333 -155395597 - L1M1 LINE L1 -7463 102 17 458 242 224 19 chrX 7204354 7204515 -155395415 - MER58B DNA MER1_type -1 340 147 1436 155 0 45 chrX 7204515 7204559 -155395371 - L1MB3 LINE L1 -87 6096 6052 1398 158 88 32 chrX 7204559 7204843 -155395087 - AluJo SINE Alu -2 300 1 1436 155 0 45 chrX 7204843 7205099 -155394831 - L1MB3 LINE L1 -131 6052 5817 605 256 0 19 chrX 7205916 7206076 -155393854 + MER58A DNA MER1_type 40 196 -28 1580 170 37 13 chrX 7206419 7206719 -155393211 + AluJo SINE Alu 1 307 -5 251 93 23 0 chrX 7207974 7208017 -155391913 + (GGGAGA)n Simple_repeat Simple_repeat 6 49 0 456 35 0 0 chrX 7208113 7208171 -155391759 + (TG)n Simple_repeat Simple_repeat 2 59 0 799 85 0 0 chrX 7208382 7208488 -155391442 + FLAM_C SINE Alu 2 107 -36 1996 122 0 10 chrX 7208493 7208788 -155391142 - AluSx SINE Alu -14 298 7 1720 181 50 11 chrX 7209314 7209673 -155390257 - MLT1B LTR MaLR -4 386 14 1301 161 51 0 chrX 7209679 7209915 -155390015 + L1MB7 LINE L1 5929 6176 -8 302 139 76 38 chrX 7211240 7211319 -155388611 - L1MB8 LINE L1 0 6178 6097 733 230 83 5 chrX 7211516 7211733 -155388197 - L1MB1 LINE L1 -24 6144 5911 191 221 78 52 chrX 7211734 7211811 -155388119 + MIR SINE MIR 184 262 0 2119 102 0 3 chrX 7213014 7213308 -155386622 - AluSc SINE Alu -16 293 1 2518 147 60 4 chrX 7214067 7214537 -155385393 - L1MB3 LINE L1 0 6183 5688 347 200 0 0 chrX 7214537 7214602 -155385328 + MER3 DNA MER1_type 140 204 -5 300 325 86 0 chrX 7216059 7216210 -155383720 + MIR SINE MIR 78 241 -21 334 309 58 80 chrX 7216252 7216527 -155383403 + L2 LINE L2 2970 3238 -34 243 88 0 0 chrX 7218682 7218716 -155381214 + (T)n Simple_repeat Simple_repeat 1 34 0 277 224 0 0 chrX 7218961 7219019 -155380911 - MER69 DNA AcHobo -1960 566 509 200 256 0 0 chrX 7220207 7220246 -155379684 + C-rich Low_complexity Low_complexity 1 39 0 2100 114 0 10 chrX 7221317 7221624 -155378306 - AluSp SINE Alu -9 304 1 1637 103 0 0 chrX 7221759 7221983 -155377947 - AluSg/x SINE Alu -6 306 83 1700 163 13 23 chrX 7222018 7222319 -155377611 + AluJo SINE Alu 1 298 -14 423 281 253 18 chrX 7222575 7222970 -155376960 - L1MC4 LINE L1 -363 7679 7192 2197 87 0 3 chrX 7222997 7223296 -155376634 + AluY SINE Alu 8 305 -6 423 228 105 35 chrX 7223305 7223419 -155376511 + MER58B DNA MER1_type 191 312 -29 952 258 122 103 chrX 7223450 7223565 -155376365 - L1MC4a LINE L1 -714 7094 6983 2763 13 0 0 chrX 7223565 7223876 -155376054 - AluY SINE Alu 0 311 1 952 258 122 103 chrX 7223876 7224072 -155375858 - L1MC4a LINE L1 -825 6983 6792 2127 128 0 0 chrX 7224072 7224378 -155375552 - AluSx SINE Alu -6 306 1 952 258 122 103 chrX 7224378 7225168 -155374762 - L1MC4a LINE L1 -1016 6792 5971 584 243 89 22 chrX 7226027 7226337 -155373593 + MER58 DNA MER1_type 4 2418 -2 228 226 28 94 chrX 7226416 7226522 -155373408 + MER41D LTR ERV1 373 471 -86 1129 183 5 23 chrX 7227561 7227780 -155372150 + MER20 DNA MER1_type 1 215 -4 215 220 40 0 chrX 7227830 7227880 -155372050 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 1363 236 133 33 chrX 7229503 7229618 -155370312 + MLT1D LTR MaLR 1 103 -402 1777 164 0 3 chrX 7229618 7229923 -155370007 + AluJo SINE Alu 1 304 -8 1363 236 133 33 chrX 7229923 7230260 -155369670 + MLT1D LTR MaLR 103 498 -7 1323 179 0 4 chrX 7230710 7230939 -155368991 - AluJb SINE Alu -84 228 1 21 0 0 0 chrX 7230941 7230962 -155368968 + AT_rich Low_complexity Low_complexity 1 21 0 3407 177 38 7 chrX 7231485 7231827 -155368103 - L1MB7 LINE L1 0 6184 5854 1629 181 7 16 chrX 7231827 7232137 -155367793 - AluJo SINE Alu -5 307 1 3407 177 38 7 chrX 7232137 7232477 -155367453 - L1MB7 LINE L1 -330 5854 5481 1766 157 7 4 chrX 7232664 7232944 -155366986 + AluJo SINE Alu 1 281 -31 206 81 27 0 chrX 7232949 7232986 -155366944 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 772 195 5 70 chrX 7233049 7233134 -155366796 - MLT1D LTR MaLR 0 505 416 1471 168 47 20 chrX 7233134 7233432 -155366498 + AluJo SINE Alu 1 306 -6 772 195 5 70 chrX 7233432 7233546 -155366384 - MLT1D LTR MaLR -89 416 319 227 31 31 0 chrX 7233555 7233587 -155366343 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 513 251 125 88 chrX 7233587 7233906 -155366024 - MLT1D LTR MaLR -294 332 2 2116 117 3 0 chrX 7234994 7235301 -155364629 + AluSq SINE Alu 1 308 -5 265 359 68 13 chrX 7236931 7237165 -155362765 - MIR SINE MIR -9 253 7 477 226 0 20 chrX 7237704 7237806 -155362124 - MER20 DNA MER1_type -114 105 6 916 180 115 6 chrX 7240330 7240513 -155359417 - MER3 DNA MER1_type -1 208 6 506 261 86 37 chrX 7240650 7240895 -155359035 + HAL1 LINE L1 1383 1639 -868 989 94 0 0 chrX 7240896 7241024 -155358906 + AluSq/x SINE Alu 1 128 -184 536 293 72 71 chrX 7241026 7241210 -155358720 + HAL1 LINE L1 1670 1852 -655 2250 84 0 3 chrX 7241210 7241507 -155358423 + AluSc SINE Alu 1 296 -13 536 293 72 71 chrX 7241507 7241747 -155358183 + HAL1 LINE L1 1852 2090 -417 2525 39 0 7 chrX 7241747 7242052 -155357878 + AluY SINE Alu 1 303 -8 536 293 72 71 chrX 7242052 7242303 -155357627 + HAL1 LINE L1 2090 2347 -160 1725 167 6 6 chrX 7242305 7242617 -155357313 + AluJb SINE Alu 1 312 0 1048 192 33 14 chrX 7242875 7243089 -155356841 - MER20 DNA MER1_type 0 219 2 298 324 148 0 chrX 7243612 7243754 -155356176 - MIR3 SINE MIR -5 203 41 184 289 0 0 chrX 7244705 7244757 -155355173 + MIR SINE MIR 100 151 -57 195 131 65 19 chrX 7245007 7245114 -155354816 + (TG)n Simple_repeat Simple_repeat 1 112 0 347 147 35 56 chrX 7245162 7245516 -155354414 + (TG)n Simple_repeat Simple_repeat 1 346 0 258 157 37 46 chrX 7245532 7245640 -155354290 + (TG)n Simple_repeat Simple_repeat 1 107 0 233 180 56 73 chrX 7245568 7245746 -155354184 + (CTGTG)n Simple_repeat Simple_repeat 5 179 0 * 336 109 23 63 chrX 7245747 7245921 -155354009 + (TG)n Simple_repeat Simple_repeat 1 167 0 491 82 38 60 chrX 7246001 7246184 -155353746 + (TG)n Simple_repeat Simple_repeat 2 180 0 806 149 113 0 chrX 7246294 7246435 -155353495 + FRAM SINE Alu 1 157 -9 2463 64 0 0 chrX 7247424 7247735 -155352195 - AluY SINE Alu 0 311 1 1163 197 10 0 chrX 7247790 7247998 -155351932 - MLT1B LTR MaLR 0 390 181 2667 150 2 9 chrX 7248316 7248769 -155351161 - L1MB3 LINE L1 -3 6180 5731 235 97 0 0 chrX 7249577 7249608 -155350322 - MLT1B LTR MaLR -2 388 358 1472 145 76 46 chrX 7250940 7251243 -155348687 + AluJo SINE Alu 1 312 0 1752 203 138 7 chrX 7251614 7251738 -155348192 - L1MB7 LINE L1 -12 6172 6066 1922 123 63 36 chrX 7251738 7252103 -155347827 - THE1C LTR MaLR 0 375 1 1752 203 138 7 chrX 7252103 7252426 -155347504 - L1MB7 LINE L1 -118 6066 5666 189 0 0 0 chrX 7253454 7253475 -155346455 + (A)n Simple_repeat Simple_repeat 1 21 0 1928 148 0 3 chrX 7253478 7253782 -155346148 + AluJb SINE Alu 4 306 -6 420 156 0 26 chrX 7253978 7254055 -155345875 + Charlie5 DNA MER1_type 29 103 -2509 820 177 96 53 chrX 7254228 7254437 -155345493 + MER20 DNA MER1_type 2 219 0 741 180 0 0 chrX 7254995 7255123 -155344807 - FRAM SINE Alu -13 163 36 1232 77 0 0 chrX 7256748 7256904 -155343026 - MER4E LTR ERV1 0 766 611 1958 129 9 22 chrX 7256923 7257264 -155342666 - MER4A LTR ERV1 0 664 270 646 122 10 10 chrX 7257273 7257371 -155342559 - MER4A LTR ERV1 -566 98 1 2352 132 64 58 chrX 7257371 7257840 -155342090 - MER4B LTR ERV1 -138 472 1 743 142 112 18 chrX 7258250 7258419 -155341511 + MER20 DNA MER1_type 33 217 -2 476 314 39 18 chrX 7259552 7259781 -155340149 - L1MC5 LINE L1 -36 7925 7692 723 197 165 101 chrX 7259792 7260185 -155339745 - MLT1C LTR MaLR 0 467 33 221 288 128 24 chrX 7260398 7260523 -155339407 + MIR SINE MIR 114 251 -11 561 312 115 23 chrX 7260625 7261061 -155338869 + L1MB5 LINE L1 5264 5739 -2069 881 159 123 29 chrX 7261451 7261580 -155338350 + L1MB5 LINE L1 5803 5919 -255 881 186 10 31 chrX 7261580 7261773 -155338157 + L1MB5 LINE L1 5986 6174 0 220 271 146 10 chrX 7261811 7261907 -155338023 - MER5C DNA MER1_type -4 320 212 309 286 238 0 chrX 7262113 7262218 -155337712 + MER5A DNA MER1_type 53 182 -7 1061 248 148 9 chrX 7262316 7262655 -155337275 - MLT1B LTR MaLR -4 386 1 202 204 0 0 chrX 7262656 7262700 -155337230 + MIR SINE MIR 101 144 -118 3516 171 30 24 chrX 7262706 7263377 -155336553 + L1MB2 LINE L1 5454 6128 -43 1723 156 7 3 chrX 7263389 7263678 -155336252 + AluJo SINE Alu 13 302 -10 354 261 0 0 chrX 7264289 7264377 -155335553 - MER96B DNA MER1_type? -5 412 325 1559 232 35 26 chrX 7264386 7264770 -155335160 - L1MB8 LINE L1 -2 6176 5786 1187 217 102 6 chrX 7264770 7265084 -155334846 - MER2 DNA MER2_type 0 344 1 1559 232 35 26 chrX 7265084 7265152 -155334778 - L1MB8 LINE L1 -392 5786 5720 1312 175 64 46 chrX 7265154 7265366 -155334564 + MER96B DNA MER1_type? 86 308 -109 2222 85 17 0 chrX 7265366 7265661 -155334269 - AluSx SINE Alu -12 300 1 1312 175 64 46 chrX 7265661 7265774 -155334156 + MER96B DNA MER1_type? 308 417 0 762 223 22 33 chrX 7265955 7266139 -155333791 - MLT1C LTR MaLR 0 467 286 1606 210 108 25 chrX 7266549 7267128 -155332802 + L1MD3 LINE L1 7267 7990 -5 21 36 0 0 chrX 7268214 7268242 -155331688 + AT_rich Low_complexity Low_complexity 1 28 0 1494 191 69 29 chrX 7269220 7269597 -155330333 - L1MB4 LINE L1 0 6180 5789 2320 82 0 0 chrX 7269878 7270160 -155329770 + AluSq SINE Alu 1 282 -31 211 37 0 0 chrX 7270160 7270187 -155329743 + (TAA)n Simple_repeat Simple_repeat 1 180 0 828 130 32 87 chrX 7273159 7273344 -155326586 + MER20 DNA MER1_type 4 178 -41 491 206 56 0 chrX 7273346 7273453 -155326477 - MER20 DNA MER1_type -106 113 1 1013 192 189 80 chrX 7274688 7275037 -155324893 + MLT1B LTR MaLR 1 387 -3 1888 190 69 35 chrX 7275384 7275668 -155324262 - MLT1C LTR MaLR 0 467 194 323 39 59 0 chrX 7275668 7275719 -155324211 + T-rich Low_complexity Low_complexity 2 55 0 2307 82 0 0 chrX 7275721 7276002 -155323928 - AluSx SINE Alu -31 281 1 1888 190 69 35 chrX 7276002 7276166 -155323764 - MLT1C LTR MaLR -273 194 1 2059 161 19 33 chrX 7276894 7277261 -155322669 - MLT1A1 LTR MaLR -1 364 3 1997 118 34 10 chrX 7278527 7278823 -155321107 + AluSx SINE Alu 1 303 -9 180 111 0 0 chrX 7279099 7279126 -155320804 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1423 213 113 19 chrX 7280436 7280859 -155319071 - MLT1C LTR MaLR -4 463 1 948 181 80 38 chrX 7282673 7282911 -155317019 - MLT1F1 LTR MaLR 0 567 320 1259 164 5 5 chrX 7283240 7283460 -155316470 + AluJo SINE Alu 86 305 -7 228 281 101 11 chrX 7283859 7283948 -155315982 - L2 LINE L2 0 3272 3176 195 343 20 20 chrX 7284053 7284155 -155315775 - MIR3 SINE MIR -3 205 104 1431 150 85 68 chrX 7284533 7284569 -155315361 - AluJo SINE Alu 0 312 278 180 0 0 0 chrX 7284569 7284589 -155315341 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1431 150 85 68 chrX 7284589 7284859 -155315071 - AluJo SINE Alu -34 278 1 1013 236 100 14 chrX 7284860 7285140 -155314790 - L1MD3 LINE L1 -369 7626 7323 342 0 0 0 chrX 7286095 7286133 -155313797 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chrX 7286170 7286192 -155313738 + (TG)n Simple_repeat Simple_repeat 2 23 0 276 232 0 14 chrX 7286563 7286632 -155313298 - L1M LINE L1 -700 5421 5354 364 228 51 57 chrX 7289127 7289285 -155310645 - Charlie5 DNA MER1_type -29 2583 2427 571 191 0 37 chrX 7289291 7289427 -155310503 - Charlie5 DNA MER1_type -91 2521 2391 797 108 0 0 chrX 7289490 7289601 -155310329 + L1MA1 LINE L1 6188 6298 -4 25 0 0 0 chrX 7290146 7290171 -155309759 + AT_rich Low_complexity Low_complexity 1 25 0 954 201 113 25 chrX 7290193 7290462 -155309468 + Charlie5 DNA MER1_type 2269 2572 -52 2536 77 0 0 chrX 7290462 7290773 -155309157 + AluSx SINE Alu 1 311 -1 954 201 113 25 chrX 7290773 7290822 -155309108 + Charlie5 DNA MER1_type 2572 2615 -9 1812 174 24 0 chrX 7291044 7291338 -155308592 + AluJo SINE Alu 1 301 -11 280 275 42 28 chrX 7291412 7291554 -155308376 - MIR SINE MIR -78 184 41 217 236 194 14 chrX 7292729 7292801 -155307129 - L2 LINE L2 -11 3302 3218 757 181 46 69 chrX 7294646 7294862 -155305068 - MER20 DNA MER1_type -8 211 1 2426 71 7 10 chrX 7295152 7295460 -155304470 + AluSx SINE Alu 1 307 -5 237 292 164 33 chrX 7297151 7297480 -155302450 - L2 LINE L2 -91 3222 2851 2346 173 121 22 chrX 7298924 7299214 -155300716 - L1MB3 LINE L1 -3 6180 5920 2180 124 0 7 chrX 7299214 7299389 -155300541 - AluSx SINE Alu -12 300 126 271 44 44 0 chrX 7299389 7299434 -155300496 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 2180 124 0 7 chrX 7299434 7299557 -155300373 - AluSx SINE Alu -186 126 4 2346 173 121 22 chrX 7299557 7299822 -155300108 - L1MB3 LINE L1 -263 5920 5570 650 290 65 0 chrX 7299888 7300102 -155299828 + MER58B DNA MER1_type 1 228 -113 2053 132 0 0 chrX 7300163 7300464 -155299466 + AluJb SINE Alu 1 301 0 180 0 0 0 chrX 7301241 7301261 -155298669 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 2036 71 0 23 chrX 7302415 7302681 -155297249 + AluSg SINE Alu 1 260 -50 206 346 63 31 chrX 7304514 7304641 -155295289 + MIR SINE MIR 19 149 -113 1030 188 28 5 chrX 7304949 7305162 -155294768 - MER20 DNA MER1_type -1 218 1 2404 103 0 3 chrX 7305293 7305605 -155294325 - AluSx SINE Alu 0 312 2 532 182 153 86 chrX 7305950 7306159 -155293771 + MER58A DNA MER1_type 2 224 0 1253 144 25 0 chrX 7307124 7307325 -155292605 + MER2 DNA MER2_type 1 206 -139 28 61 0 0 chrX 7307325 7307374 -155292556 + AT_rich Low_complexity Low_complexity 1 49 0 1655 122 0 0 chrX 7307404 7307634 -155292296 - AluJb SINE Alu -82 230 1 225 273 0 0 chrX 7307645 7307689 -155292241 + MER2 DNA MER2_type 302 345 0 214 147 59 15 chrX 7307706 7307774 -155292156 + (TA)n Simple_repeat Simple_repeat 2 72 0 1958 253 68 39 chrX 7307790 7307895 -155292035 - L1MEc LINE L1 -4033 2363 2262 1083 144 20 10 chrX 7307895 7308090 -155291840 - L1PA13 LINE L1 0 6163 5967 1958 253 68 39 chrX 7308090 7308975 -155290955 - L1MEc LINE L1 -4134 2262 1345 2065 124 7 10 chrX 7309035 7309341 -155290589 - AluSx SINE Alu -7 305 1 216 362 34 0 chrX 7310952 7311101 -155288829 + MIR SINE MIR 15 168 -94 21 0 0 0 chrX 7311177 7311198 -155288732 + AT_rich Low_complexity Low_complexity 1 21 0 222 281 0 24 chrX 7311198 7311280 -155288650 + MIR SINE MIR 183 262 0 895 119 0 0 chrX 7311292 7311410 -155288520 - FLAM_C SINE Alu -25 118 1 415 265 88 6 chrX 7311711 7311892 -155288038 - MLT1F LTR MaLR -78 464 269 466 145 13 0 chrX 7311969 7312045 -155287885 - MER20 DNA MER1_type -113 106 30 1641 204 105 15 chrX 7312629 7313034 -155286896 + L1MB5 LINE L1 5689 6122 -58 828 123 0 43 chrX 7313034 7313172 -155286758 + FLAM_C SINE Alu 1 132 -1 1641 204 105 15 chrX 7313172 7313236 -155286694 + L1MB5 LINE L1 6122 6179 -1 378 0 0 0 chrX 7313244 7313286 -155286644 + (CAA)n Simple_repeat Simple_repeat 2 43 0 39 60 0 0 chrX 7316672 7316739 -155283191 + AT_rich Low_complexity Low_complexity 1 67 0 2049 110 11 14 chrX 7317368 7317689 -155282241 - AluSx SINE Alu 0 320 1 1270 161 96 45 chrX 7318477 7318812 -155281118 - L1MB7 LINE L1 -287 5897 5546 693 257 6 0 chrX 7319445 7319620 -155280310 - MER58B DNA MER1_type -3 338 163 808 187 91 5 chrX 7319897 7320095 -155279835 + MER20 DNA MER1_type 5 219 0 1631 182 0 33 chrX 7320327 7320634 -155279296 + AluJb SINE Alu 1 297 -15 2111 132 0 10 chrX 7321402 7321713 -155278217 - AluSx SINE Alu 0 312 5 1513 136 4 0 chrX 7321857 7322092 -155277838 - AluJb SINE Alu -16 296 61 203 345 124 48 chrX 7322706 7322851 -155277079 + MIR SINE MIR 20 175 -87 251 327 87 0 chrX 7324714 7324864 -155275066 - MIR SINE MIR -62 200 38 1536 175 0 56 chrX 7326546 7326849 -155273081 - AluJo SINE Alu -26 286 1 412 221 176 22 chrX 7326961 7327097 -155272833 + MER20 DNA MER1_type 1 157 -62 334 149 68 54 chrX 7327207 7327281 -155272649 + MIR3 SINE MIR 109 183 -25 1853 125 6 55 chrX 7327775 7328103 -155271827 - AluJb SINE Alu 0 312 1 1290 203 32 7 chrX 7328656 7328937 -155270993 - MLT1E1 LTR MaLR 0 654 367 353 173 10 175 chrX 7328984 7329104 -155270826 - MLT1E LTR MaLR -430 163 51 225 298 27 98 chrX 7329219 7329333 -155270597 + MARNA DNA Mariner 326 447 -139 1644 170 26 7 chrX 7329333 7329639 -155270291 + AluJb SINE Alu 1 312 0 2269 69 0 0 chrX 7329643 7329933 -155269997 + AluSc SINE Alu 1 290 -19 225 298 27 98 chrX 7329933 7330038 -155269892 + MARNA DNA Mariner 450 534 -52 1226 229 93 34 chrX 7331915 7332356 -155267574 - MLT1C LTR MaLR 0 467 1 2538 91 37 6 chrX 7334659 7335012 -155264918 + THE1B LTR MaLR 1 364 0 1552 122 3 107 chrX 7335558 7335885 -155264045 - AluJb SINE Alu -19 293 1 1839 235 26 22 chrX 7335960 7336458 -155263472 - L1ME1 LINE L1 -101 6065 5566 1213 151 31 5 chrX 7337595 7337905 -155262025 + MLT1A1 LTR MaLR 1 365 0 1564 147 90 4 chrX 7338030 7338296 -155261634 + AluJb SINE Alu 7 295 -17 2166 174 10 17 chrX 7339054 7339469 -155260461 + L1MB3 LINE L1 5730 6141 -42 1266 174 8 28 chrX 7339469 7339722 -155260208 + AluJo SINE Alu 42 289 -23 299 115 0 0 chrX 7339728 7339780 -155260150 + L1MB3 LINE L1 6125 6176 -7 891 287 60 51 chrX 7340037 7340235 -155259695 + L1MD2 LINE L1 5710 5905 -454 2147 116 0 6 chrX 7340235 7340546 -155259384 + AluSx SINE Alu 1 309 -3 891 287 60 51 chrX 7340546 7340779 -155259151 + L1MD2 LINE L1 5905 6145 -214 590 264 122 10 chrX 7341549 7341746 -155258184 - MER20 DNA MER1_type 0 219 1 489 205 26 43 chrX 7342096 7342213 -155257717 + LTR8A LTR ERV1 1 115 -612 12755 161 66 52 chrX 7342213 7342248 -155257682 + HUERS-P1 LTR ERV1 1978 2011 -4587 450 0 0 0 chrX 7342248 7342298 -155257632 + (TA)n Simple_repeat Simple_repeat 1 50 0 12755 161 66 52 chrX 7342298 7343789 -155256141 + HUERS-P1 LTR ERV1 2011 3481 -3117 1758 62 9 0 chrX 7343789 7344016 -155255914 + AluY SINE Alu 50 278 -33 12755 161 66 52 chrX 7344016 7345981 -155253949 + HUERS-P1 LTR ERV1 3481 6257 -341 784 176 171 40 chrX 7346024 7346223 -155253707 + HUERS-P1 LTR ERV1 6050 6274 -57 1528 220 36 3 chrX 7346301 7346610 -155253320 + HUERS-P1 LTR ERV1 5945 6263 0 2526 178 78 68 chrX 7346610 7347330 -155252600 + LTR8A LTR ERV1 1 727 0 1504 186 43 25 chrX 7347845 7348168 -155251762 - MER77 LTR ERV1 0 605 277 2148 108 78 9 chrX 7349607 7349941 -155249989 - MLT1A1 LTR MaLR 0 365 9 595 299 54 9 chrX 7350108 7350332 -155249598 - MIR SINE MIR 0 262 29 300 261 67 59 chrX 7350332 7350451 -155249479 + L1MCa LINE L1 1937 2056 -4370 330 234 0 0 chrX 7350469 7350533 -155249397 - MER2 DNA MER2_type 0 345 282 1989 111 7 10 chrX 7350540 7350828 -155249102 + AluSx SINE Alu 1 287 -25 21 0 0 0 chrX 7350902 7350923 -155249007 + AT_rich Low_complexity Low_complexity 1 21 0 488 143 0 0 chrX 7350925 7351002 -155248928 - MER83B LTR ERV1 -76 302 226 1588 174 0 14 chrX 7351035 7351322 -155248608 - AluJb SINE Alu -29 283 1 1527 187 21 3 chrX 7351324 7351439 -155248491 - AluJb SINE Alu -16 296 184 216 0 0 0 chrX 7351439 7351463 -155248467 + (C)n Simple_repeat Simple_repeat 1 24 0 1527 187 21 3 chrX 7351463 7351636 -155248294 - AluJb SINE Alu -128 184 3 2251 89 0 22 chrX 7352360 7352674 -155247256 + AluSq SINE Alu 1 307 -6 324 230 82 59 chrX 7354424 7354559 -155245371 + MER74B LTR ERVL 472 609 -13 268 333 0 0 chrX 7354593 7354671 -155245259 - MIR3 SINE MIR -12 196 119 336 263 0 0 chrX 7354921 7354997 -155244933 + MER2 DNA MER2_type 270 345 0 1180 227 0 0 chrX 7355009 7355229 -155244701 - MER58A DNA MER1_type -4 220 1 875 167 48 12 chrX 7355999 7356167 -155243763 + MER20 DNA MER1_type 46 219 0 1844 196 37 0 chrX 7356661 7357013 -155242917 - MLT1A1 LTR MaLR 0 365 1 289 275 111 0 chrX 7357200 7357344 -155242586 - MIR3 SINE MIR -62 146 4 237 352 101 25 chrX 7358083 7358242 -155241688 + MIR SINE MIR 17 187 -75 1606 168 9 37 chrX 7361061 7361382 -155238548 + AluJb SINE Alu 1 312 0 822 174 0 0 chrX 7362056 7362194 -155237736 - AluJb SINE Alu -19 293 156 1813 121 49 39 chrX 7362471 7362778 -155237152 - AluJo SINE Alu -2 310 1 1600 185 3 3 chrX 7363175 7363467 -155236463 + AluJo SINE Alu 2 293 -19 853 228 20 18 chrX 7364236 7364458 -155235472 - MER20 DNA MER1_type 0 219 7 204 182 0 0 chrX 7364898 7364942 -155234988 + (CGG)n Simple_repeat Simple_repeat 3 46 0 426 272 0 0 chrX 7365705 7365867 -155234063 + (TG)n Simple_repeat Simple_repeat 1 162 0 469 248 46 0 chrX 7366902 7367011 -155232919 - MER58A DNA MER1_type 0 224 111 2097 178 27 5 chrX 7367017 7367393 -155232537 - MLT1B LTR MaLR -6 384 1 482 211 26 26 chrX 7367392 7367506 -155232424 - MER58A DNA MER1_type 0 116 3 * 1443 173 24 0 chrX 7367521 7367658 -155232272 - AluJo SINE Alu -46 266 119 207 0 0 0 chrX 7367658 7367681 -155232249 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1443 173 24 0 chrX 7367681 7367797 -155232133 - AluJo SINE Alu -193 119 7 2255 95 3 3 chrX 7367912 7368218 -155231712 + AluSx SINE Alu 1 306 -6 2141 108 0 0 chrX 7369169 7369466 -155230464 - AluSx SINE Alu -15 297 1 1255 121 5 33 chrX 7371144 7371395 -155228535 + AluSq SINE Alu 74 318 0 1943 82 56 0 chrX 7371450 7371757 -155228173 + AluSp SINE Alu 1 322 0 1181 175 9 31 chrX 7371822 7372045 -155227885 + MER58A DNA MER1_type 7 224 0 459 276 85 35 chrX 7372317 7372516 -155227414 - MIR SINE MIR -21 241 33 964 62 86 0 chrX 7373604 7373732 -155226198 - MER85 DNA T2_type 0 139 1 814 227 75 14 chrX 7373748 7374026 -155225904 + MER33 DNA MER1_type 30 324 0 180 0 0 0 chrX 7374197 7374217 -155225713 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1859 154 3 0 chrX 7374248 7374534 -155225396 + AluJo SINE Alu 1 287 -25 1790 176 4 4 chrX 7374560 7374838 -155225092 + AluJo SINE Alu 1 278 -34 2556 219 44 4 chrX 7375053 7375593 -155224337 - MER68 LTR ERV1 0 562 1 2066 116 0 0 chrX 7375737 7376005 -155223925 - AluSx SINE Alu -10 302 35 269 136 0 0 chrX 7376741 7376785 -155223145 - L1MB5 LINE L1 -112 6062 6019 769 265 95 14 chrX 7377571 7377865 -155222065 + L1MD2 LINE L1 5804 6121 -238 514 270 20 7 chrX 7377884 7378032 -155221898 + L1MD3 LINE L1 7832 7981 -14 1139 99 14 94 chrX 7378227 7378440 -155221490 + MER30 DNA MER1_type 1 196 -34 2007 147 0 19 chrX 7378912 7379219 -155220711 + AluJo SINE Alu 1 301 -11 1190 133 12 0 chrX 7379219 7379384 -155220546 + AluJo/FRAM SINE Alu 138 304 -8 600 259 7 0 chrX 7379386 7379529 -155220401 - MER82 DNA MER2_type -485 168 25 291 211 0 0 chrX 7379988 7380083 -155219847 + GA-rich Low_complexity Low_complexity 5 99 0 181 279 174 0 chrX 7380728 7380814 -155219116 + MER5B DNA MER1_type 14 114 -64 1579 179 47 24 chrX 7381361 7381657 -155218273 + AluJo SINE Alu 1 303 -9 595 294 93 57 chrX 7382086 7382231 -155217699 + L1M4 LINE L1 1146 1284 -5528 1480 170 129 15 chrX 7382231 7382502 -155217428 + AluJo SINE Alu 1 302 0 595 294 93 57 chrX 7382502 7382560 -155217370 + L1M4 LINE L1 1284 1338 -5474 1810 145 134 31 chrX 7382560 7382947 -155216983 - MSTA LTR MaLR 0 428 2 595 294 93 57 chrX 7382947 7383376 -155216554 + L1M4 LINE L1 1338 1949 -4863 1676 155 50 0 chrX 7385358 7385636 -155214294 + AluJb SINE Alu 1 292 -20 2116 119 26 19 chrX 7386701 7387011 -155212919 + AluJb SINE Alu 1 312 0 881 160 0 0 chrX 7387508 7387639 -155212291 - FLAM_C SINE Alu -2 131 1 1959 125 27 27 chrX 7387818 7388115 -155211815 + AluJo SINE Alu 1 297 -15 2377 106 3 0 chrX 7389084 7389395 -155210535 - AluSx SINE Alu 0 312 1 2313 108 0 3 chrX 7390180 7390486 -155209444 - AluSx SINE Alu -7 305 1 930 103 8 0 chrX 7390746 7390872 -155209058 - FLAM_C SINE Alu -16 127 1 778 286 128 10 chrX 7391104 7391517 -155208413 - LTR16B LTR ERVL 0 464 3 396 187 18 10 chrX 7391985 7392060 -155207870 + MER20 DNA MER1_type 3 57 -162 1871 198 15 0 chrX 7392060 7392403 -155207527 - MER7A DNA MER2_type 0 346 1 396 187 18 10 chrX 7392403 7392424 -155207506 + MER20 DNA MER1_type 57 76 -143 361 241 12 0 chrX 7392834 7392917 -155207013 - MER58A DNA MER1_type -22 85 2 192 77 0 0 chrX 7393836 7393862 -155206068 + (TC)n Simple_repeat Simple_repeat 2 27 0 27 62 0 0 chrX 7394009 7394057 -155205873 + AT_rich Low_complexity Low_complexity 1 48 0 1139 144 78 6 chrX 7398342 7398522 -155201408 + AluJb SINE Alu 89 281 -31 1944 168 3 0 chrX 7398527 7398831 -155201099 - AluSx SINE Alu -7 305 1 236 263 178 33 chrX 7398967 7399119 -155200811 + L2 LINE L2 1527 1700 -1614 753 256 80 75 chrX 7399415 7399951 -155199979 - LTR67 LTR ERVL -8 549 11 8029 109 47 6 chrX 7400344 7401586 -155198344 + HSMAR2 DNA Mariner 9 1301 -1 1479 190 15 0 chrX 7401841 7402110 -155197820 + Tigger3(Golem) DNA MER2_type 2766 3038 0 225 0 0 0 chrX 7402739 7402764 -155197166 + (A)n Simple_repeat Simple_repeat 1 25 0 1584 197 21 58 chrX 7403750 7404333 -155195597 + LTR27 LTR ERV1 1 636 0 876 272 130 25 chrX 7404596 7404997 -155194933 + L2 LINE L2 2854 3296 -17 1536 171 45 31 chrX 7405293 7405580 -155194350 + AluJo SINE Alu 1 291 -21 2108 148 26 0 chrX 7406631 7406970 -155192960 + MER7A DNA MER2_type 1 346 0 1218 128 137 10 chrX 7407934 7408138 -155191792 + AluSx SINE Alu 64 293 -19 2276 117 3 13 chrX 7409339 7409648 -155190282 + AluSx SINE Alu 1 306 -6 2400 106 6 0 chrX 7410558 7410869 -155189061 + AluSq SINE Alu 1 313 0 743 183 0 0 chrX 7413221 7413347 -155186583 - FLAM_A SINE Alu -7 126 1 274 326 39 31 chrX 7413643 7413772 -155186158 + L2 LINE L2 3141 3270 -2 1700 158 12 79 chrX 7413777 7414106 -155185824 + AluJo SINE Alu 1 307 -5 1534 202 92 0 chrX 7414108 7414479 -155185451 + L1MB7 LINE L1 5780 6184 0 1591 176 49 14 chrX 7414486 7414770 -155185160 + AluJb SINE Alu 1 294 -18 2039 128 6 3 chrX 7415370 7415682 -155184248 - AluSq SINE Alu 0 313 1 712 106 0 0 chrX 7415682 7415776 -155184154 - AluSq/x SINE Alu -178 134 41 716 212 35 6 chrX 7416005 7416175 -155183755 + MER20 DNA MER1_type 1 175 -44 194 128 26 0 chrX 7416607 7416646 -155183284 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 191 242 19 25 chrX 7416705 7416862 -155183068 + GA-rich Low_complexity Low_complexity 2 157 0 207 100 0 0 chrX 7417500 7417530 -155182400 + (T)n Simple_repeat Simple_repeat 1 30 0 959 162 14 0 chrX 7417893 7418041 -155181889 + FRAM SINE Alu 1 146 -30 180 77 0 0 chrX 7418048 7418074 -155181856 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2051 136 3 23 chrX 7418363 7418671 -155181259 + AluJo SINE Alu 1 302 -10 1437 143 95 0 chrX 7419040 7419271 -155180659 - AluJo SINE Alu -25 287 35 2170 113 0 0 chrX 7419583 7419858 -155180072 + AluSx SINE Alu 1 275 -37 894 125 0 56 chrX 7419858 7420002 -155179928 + AluJb SINE Alu 172 307 -5 731 132 6 93 chrX 7420623 7420805 -155179125 - L1MD3 LINE L1 -8 7987 7822 2087 132 20 0 chrX 7420814 7421110 -155178820 + AluSx SINE Alu 1 302 -10 2293 97 3 0 chrX 7421186 7421476 -155178454 + AluSq SINE Alu 6 296 -17 503 193 67 8 chrX 7421519 7421638 -155178292 - L1ME4a LINE L1 -34 6087 5962 2298 87 0 13 chrX 7421729 7422028 -155177902 + AluSx SINE Alu 2 296 -16 261 0 0 0 chrX 7423768 7423797 -155176133 + (A)n Simple_repeat Simple_repeat 1 29 0 200 182 0 0 chrX 7423936 7423969 -155175961 + GA-rich Low_complexity Low_complexity 5 37 0 1026 206 14 14 chrX 7424455 7424664 -155175266 - MER58A DNA MER1_type -15 209 1 857 160 0 0 chrX 7425590 7425740 -155174190 - L1MB5 LINE L1 -8 6166 6017 1617 120 70 94 chrX 7425744 7426184 -155173746 + THE1C LTR MaLR 1 375 0 1092 157 10 5 chrX 7426188 7426385 -155173545 - L1MB5 LINE L1 -161 6013 5816 736 173 8 0 chrX 7426390 7426517 -155173413 - FLAM_C SINE Alu -11 132 5 1695 156 15 7 chrX 7426548 7426817 -155173113 - AluJb SINE Alu -34 278 8 876 171 56 60 chrX 7426825 7426977 -155172953 - L1MB5 LINE L1 -348 5826 5674 1961 152 7 0 chrX 7426977 7427266 -155172664 - AluJo SINE Alu -21 291 1 876 171 56 60 chrX 7427266 7427329 -155172601 - L1MB5 LINE L1 -500 5674 5612 2284 106 3 0 chrX 7427329 7427621 -155172309 - AluSx SINE Alu -19 293 1 392 141 14 28 chrX 7427621 7427692 -155172238 + MLT1A1 LTR MaLR 295 364 -1 550 122 41 10 chrX 7428272 7428370 -155171560 + L1MB7 LINE L1 5816 5916 -268 695 214 6 40 chrX 7428378 7428551 -155171379 + L1MB7 LINE L1 6002 6168 -16 1707 171 24 20 chrX 7428833 7429125 -155170805 - AluJo SINE Alu -18 294 2 1220 226 40 17 chrX 7429161 7429457 -155170473 + MLT1D LTR MaLR 1 303 -202 1044 172 0 6 chrX 7429457 7429631 -155170299 + FRAM SINE Alu 1 172 -4 2142 105 54 0 chrX 7429852 7430146 -155169784 + AluSg SINE Alu 1 310 0 285 315 35 14 chrX 7431751 7431894 -155168036 + MLT1J LTR MaLR 11 156 -355 2187 102 0 84 chrX 7431894 7432229 -155167701 + AluSq SINE Alu 1 307 -6 910 243 65 81 chrX 7432266 7432637 -155167293 + MLT1J LTR MaLR 147 511 0 2078 135 20 0 chrX 7483099 7483395 -155116535 - AluJb SINE Alu -2 310 9 2212 111 0 16 chrX 7483502 7483817 -155116113 + AluSq SINE Alu 1 310 -3 1905 165 0 13 chrX 7485840 7486156 -155113774 + AluJb SINE Alu 1 312 0 261 306 89 6 chrX 7486376 7486533 -155113397 + MER5B DNA MER1_type 1 170 -8 1157 146 6 6 chrX 7486569 7486747 -155113183 - AluJb SINE Alu 0 312 135 379 260 0 0 chrX 7487248 7487344 -155112586 + MER5A DNA MER1_type 1 96 -93 1822 155 52 14 chrX 7487359 7487708 -155112222 - THE1C LTR MaLR -13 362 1 1517 171 59 39 chrX 7487817 7488122 -155111808 - AluJo SINE Alu -1 311 1 2318 123 0 0 chrX 7488370 7488680 -155111250 - AluSx SINE Alu 0 312 3 266 0 29 0 chrX 7489303 7489337 -155110593 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 530 213 16 8 chrX 7489430 7489552 -155110378 + MLT1A2 LTR MaLR 200 322 -52 254 111 0 0 chrX 7489559 7489595 -155110335 - Alu SINE Alu -263 37 2 307 221 0 0 chrX 7489612 7489680 -155110250 - L1MB3 LINE L1 -178 6005 5938 2423 62 0 10 chrX 7489954 7490245 -155109685 - AluSp SINE Alu -2 311 24 640 194 148 46 chrX 7490526 7490700 -155109230 - MER20 DNA MER1_type -3 216 18 1972 128 54 20 chrX 7490700 7490749 -155109181 - MLT1A1 LTR MaLR 0 365 319 2507 74 3 0 chrX 7490749 7491048 -155108882 + AluSp SINE Alu 10 309 -4 1972 128 54 20 chrX 7491048 7491351 -155108579 - MLT1A1 LTR MaLR -46 319 1 640 194 148 46 chrX 7491351 7491372 -155108558 - MER20 DNA MER1_type -201 18 1 414 0 0 0 chrX 7492972 7493018 -155106912 + (TG)n Simple_repeat Simple_repeat 1 46 0 362 269 59 25 chrX 7493063 7493182 -155106748 - MLT1K LTR MaLR -6 582 460 812 193 56 0 chrX 7493368 7493529 -155106401 + MER20 DNA MER1_type 2 171 -48 201 39 0 0 chrX 7493995 7494021 -155105909 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 304 303 81 10 chrX 7494069 7494168 -155105762 - AluJb SINE Alu -21 281 176 807 145 105 23 chrX 7495096 7495268 -155104662 - AluJo SINE Alu -6 306 121 182 341 35 0 chrX 7495571 7495656 -155104274 + MIR SINE MIR 59 146 -116 246 154 31 15 chrX 7495853 7495918 -155104012 + CT-rich Low_complexity Low_complexity 1 66 0 1312 267 23 32 chrX 7495934 7495963 -155103967 - L1MB7 LINE L1 -11 6173 6145 748 181 0 0 chrX 7495963 7496096 -155103834 - AluJo SINE Alu -169 133 1 1312 267 23 32 chrX 7496096 7496497 -155103433 - L1MB7 LINE L1 -39 6145 5747 2666 53 0 0 chrX 7497427 7497728 -155102202 - AluY SINE Alu -10 301 1 548 203 108 0 chrX 7498212 7498360 -155101570 + L1MB8 LINE L1 5900 6063 -115 600 301 25 20 chrX 7498850 7499107 -155100823 - L1ME1 LINE L1 -165 6001 5781 1714 153 62 7 chrX 7499649 7499937 -155099993 - AluJb SINE Alu -8 304 1 341 273 32 71 chrX 7500090 7500244 -155099686 + HAL1b LINE L1 1200 1347 -1 2183 135 0 3 chrX 7500313 7500624 -155099306 - AluSq SINE Alu -3 310 1 1841 132 10 65 chrX 7501128 7501438 -155098492 + AluJo SINE Alu 1 293 -19 25 0 0 0 chrX 7501651 7501676 -155098254 + AT_rich Low_complexity Low_complexity 1 25 0 266 204 0 0 chrX 7501681 7501725 -155098205 - AluJ/monomer SINE Alu -258 44 1 1821 146 31 121 chrX 7502466 7502767 -155097163 - L1MD3 LINE L1 0 7995 7669 2011 133 0 17 chrX 7502767 7503069 -155096861 - AluSx SINE Alu -15 297 1 1821 146 31 121 chrX 7503069 7503282 -155096648 - L1MD3 LINE L1 -326 7669 7310 23 0 0 44 chrX 7503581 7503598 -155096332 + AT_rich Low_complexity Low_complexity 1 17 -26 1947 155 7 7 chrX 7503598 7503895 -155096035 + AluJb SINE Alu 1 297 -15 2323 103 0 7 chrX 7503899 7504200 -155095730 + AluSq SINE Alu 1 299 -14 23 0 0 44 chrX 7504200 7504222 -155095708 + AT_rich Low_complexity Low_complexity 20 43 0 674 262 52 0 chrX 7504367 7504577 -155095353 - MER58A DNA MER1_type -2 222 2 922 237 17 58 chrX 7505178 7505473 -155094457 - L1ME3A LINE L1 -83 6087 5805 1559 153 0 12 chrX 7505481 7505656 -155094274 - AluJo SINE Alu -4 308 135 2321 104 0 3 chrX 7505656 7505964 -155093966 - AluY SINE Alu -4 307 1 1559 153 0 12 chrX 7505964 7506037 -155093893 - AluJo SINE Alu -177 135 63 3009 9 0 0 chrX 7507592 7507910 -155092020 + AluYb8 SINE Alu 1 318 0 216 319 75 43 chrX 7507988 7508082 -155091848 + MIR SINE MIR 22 118 -90 1988 142 26 3 chrX 7509935 7510237 -155089693 + AluJb SINE Alu 1 309 -3 1768 186 0 0 chrX 7510397 7510687 -155089243 - AluJo SINE Alu -22 290 1 703 188 106 69 chrX 7510691 7510825 -155089105 - L1MD1 LINE L1 -14 6228 6081 1825 135 3 53 chrX 7510825 7511128 -155088802 - AluJb SINE Alu -8 304 17 703 188 106 69 chrX 7511128 7511211 -155088719 - L1MD1 LINE L1 -161 6081 6003 366 115 0 33 chrX 7511882 7511943 -155087987 - AluJ/FLAM SINE Alu -227 75 17 294 203 16 0 chrX 7511943 7512007 -155087923 - L1MD1 LINE L1 -146 6096 6032 248 303 101 0 chrX 7512124 7512213 -155087717 - MIR3 SINE MIR -15 193 96 1607 197 87 32 chrX 7512736 7513172 -155086758 - MLT1C LTR MaLR -7 460 1 293 269 37 9 chrX 7513189 7513297 -155086633 - L1ME3A LINE L1 -14 6156 6046 1516 54 19 0 chrX 7514480 7514685 -155085245 + L1PA7 LINE L1 5946 6154 0 225 0 0 0 chrX 7514925 7514950 -155084980 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 7515405 7515427 -155084503 + AT_rich Low_complexity Low_complexity 1 22 0 1982 132 0 35 chrX 7516745 7517063 -155082867 - AluJb SINE Alu -1 311 5 2391 89 0 10 chrX 7517898 7518200 -155081730 + AluSq SINE Alu 1 299 -14 2231 100 0 4 chrX 7518310 7518590 -155081340 + AluSx SINE Alu 1 279 -33 1072 197 5 5 chrX 7519423 7519636 -155080294 + MER20 DNA MER1_type 3 215 -4 290 271 25 42 chrX 7519654 7519772 -155080158 - L1ME LINE L1 -396 5774 5659 2346 107 0 0 chrX 7519811 7520102 -155079828 - AluSx SINE Alu -21 291 1 1618 213 74 12 chrX 7520143 7520547 -155079383 + L1MB2 LINE L1 5727 6155 -16 1582 208 0 10 chrX 7520554 7520847 -155079083 - AluJo SINE Alu -21 291 2 240 213 27 0 chrX 7521309 7521379 -155078551 - LTR41 LTR ERVL 0 795 720 407 259 43 0 chrX 7521418 7521534 -155078396 + MER58B DNA MER1_type 220 340 -1 502 286 164 64 chrX 7521586 7522208 -155077722 - LTR41 LTR ERVL -87 686 3 694 182 23 8 chrX 7523006 7523138 -155076792 - FAM SINE Alu -20 165 32 1858 124 0 72 chrX 7523778 7523915 -155076015 + AluJo SINE Alu 14 120 -192 2623 7 0 24 chrX 7523915 7524239 -155075691 + AluYa5 SINE Alu 1 317 0 1858 124 0 72 chrX 7524239 7524407 -155075523 + AluJo SINE Alu 120 298 -14 2524 79 0 0 chrX 7524933 7525238 -155074692 - AluY SINE Alu -6 305 1 216 0 0 0 chrX 7525463 7525487 -155074443 + (T)n Simple_repeat Simple_repeat 1 24 0 2301 117 0 0 chrX 7527585 7527922 -155072008 - AluSg SINE Alu 0 337 1 1519 158 3 110 chrX 7527922 7528258 -155071672 - AluJb SINE Alu -12 300 1 2271 116 0 19 chrX 7528321 7528639 -155071291 - AluSx SINE Alu 0 312 1 2438 149 15 22 chrX 7528670 7529126 -155070804 - L1MB3 LINE L1 -3 6180 5728 1610 181 0 28 chrX 7529328 7529610 -155070320 + AluJb SINE Alu 15 288 -24 482 236 192 33 chrX 7531389 7531571 -155068359 - MER58A DNA MER1_type -5 219 9 2379 88 3 7 chrX 7531661 7531967 -155067963 + AluSg SINE Alu 1 305 -5 782 192 85 6 chrX 7532090 7532267 -155067663 + L1MB7 LINE L1 5466 5656 -524 1862 187 63 0 chrX 7532272 7532668 -155067262 + L1MB7 LINE L1 5755 6175 -9 687 111 10 0 chrX 7533981 7534080 -155065850 - HY3 scRNA scRNA -1 100 1 2055 146 0 31 chrX 7534167 7534489 -155065441 + AluJb SINE Alu 1 312 0 433 261 213 37 chrX 7535011 7535279 -155064651 - L1MB3 LINE L1 -2164 5644 5330 198 271 153 76 chrX 7535315 7535459 -155064471 + L3 LINE CR1 1163 1317 -260 408 111 136 0 chrX 7535632 7535713 -155064217 - MER21A LTR ERV1 -1 930 839 333 211 40 47 chrX 7535803 7535943 -155063987 - L1MB8 LINE L1 -122 6061 5920 868 163 88 0 chrX 7536186 7536333 -155063597 - FRAM SINE Alu -6 160 1 21 36 0 0 chrX 7538379 7538407 -155061523 + AT_rich Low_complexity Low_complexity 1 28 0 204 200 0 0 chrX 7538413 7538458 -155061472 + GA-rich Low_complexity Low_complexity 4 48 0 1048 168 0 0 chrX 7538460 7538615 -155061315 - FAM SINE Alu -30 155 1 2037 111 21 0 chrX 7538622 7538939 -155060991 - AluSx SINE Alu 0 323 1 318 259 95 43 chrX 7542847 7542963 -155056967 - MER5A DNA MER1_type -67 122 1 291 54 0 0 chrX 7543731 7543768 -155056162 + (T)n Simple_repeat Simple_repeat 1 37 0 672 167 0 0 chrX 7543881 7543983 -155055947 - FRAM SINE Alu -13 163 62 22 0 0 0 chrX 7544053 7544075 -155055855 + AT_rich Low_complexity Low_complexity 1 22 0 945 135 0 0 chrX 7544306 7544432 -155055498 + FLAM_C SINE Alu 1 126 -17 25 0 0 0 chrX 7544437 7544462 -155055468 + AT_rich Low_complexity Low_complexity 1 25 0 1972 138 17 3 chrX 7545051 7545347 -155054583 + AluJo SINE Alu 1 300 -12 2042 155 52 8 chrX 7545829 7546229 -155053701 - L1MB2 LINE L1 -6 6165 5748 952 141 7 0 chrX 7546743 7546878 -155053052 + AluJo SINE Alu 1 136 -176 613 228 22 0 chrX 7547254 7547390 -155052540 + MER3 DNA MER1_type 23 161 -48 1788 176 0 0 chrX 7547832 7548122 -155051808 - AluJo SINE Alu -22 290 1 2316 124 0 0 chrX 7549463 7549770 -155050160 + AluSx SINE Alu 1 307 -5 213 219 0 0 chrX 7551011 7551084 -155048846 + (TG)n Simple_repeat Simple_repeat 2 74 0 442 232 6 11 chrX 7551097 7551278 -155048652 + (TG)n Simple_repeat Simple_repeat 1 180 0 1916 153 29 13 chrX 7551356 7551663 -155048267 + AluJo SINE Alu 1 312 0 1651 154 0 84 chrX 7552474 7552807 -155047123 - AluJb SINE Alu 0 307 1 922 213 63 29 chrX 7552807 7553046 -155046884 - MER58B DNA MER1_type -21 320 74 2393 86 7 7 chrX 7553048 7553352 -155046578 + AluSx SINE Alu 1 304 -8 970 178 205 50 chrX 7556821 7557079 -155042851 + AluJo SINE Alu 5 302 0 1964 125 0 58 chrX 7558341 7558653 -155041277 + AluJb SINE Alu 2 295 -17 1898 177 21 23 chrX 7560352 7560736 -155039194 - MLT1B LTR MaLR -7 383 1 295 331 81 0 chrX 7561173 7561297 -155038633 + L2 LINE L2 3138 3271 -1 221 255 0 0 chrX 7561298 7561345 -155038585 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 755 178 0 6 chrX 7561385 7561565 -155038365 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 203 298 0 0 chrX 7561567 7561614 -155038316 + (TGGG)n Simple_repeat Simple_repeat 1 47 0 522 249 0 0 chrX 7561615 7561788 -155038142 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 317 389 56 5 chrX 7561823 7562021 -155037909 - L1 LINE L1 -2317 3829 3622 2044 148 3 6 chrX 7562912 7563223 -155036707 - AluJb SINE Alu -2 310 1 863 170 0 0 chrX 7563616 7563751 -155036179 + AluJo SINE Alu 1 135 -177 1471 158 60 34 chrX 7564263 7564528 -155035402 - AluJb SINE Alu -35 277 6 1297 174 54 8 chrX 7565564 7565823 -155034107 + L1MB7 LINE L1 5895 6165 -19 2387 72 30 7 chrX 7565891 7566196 -155033734 + AluSq SINE Alu 1 312 -1 399 289 35 0 chrX 7566224 7566338 -155033592 - MER58A DNA MER1_type 0 224 107 185 301 0 41 chrX 7567024 7567097 -155032833 + L3 LINE CR1 1321 1390 -187 998 242 9 22 chrX 7567106 7567329 -155032601 + MER58A DNA MER1_type 1 220 -4 1821 130 52 0 chrX 7568053 7568370 -155031560 + AluJo SINE Alu 1 331 0 4240 192 50 34 chrX 7568381 7569146 -155030784 + L1MC3 LINE L1 6701 7489 -296 2103 186 8 14 chrX 7569146 7569512 -155030418 - MLT1A1 LTR MaLR 0 365 2 4240 192 50 34 chrX 7569512 7569798 -155030132 + L1MC3 LINE L1 7489 7769 -16 783 138 0 0 chrX 7569803 7569912 -155030018 + AluJo/FLAM SINE Alu 2 110 -202 2416 88 0 0 chrX 7569913 7570207 -155029723 + AluSx SINE Alu 1 294 -18 907 102 0 16 chrX 7570234 7570362 -155029568 - FLAM_C SINE Alu -17 126 1 206 362 101 11 chrX 7570531 7570719 -155029211 + MIR SINE MIR 20 224 -38 1005 178 6 0 chrX 7571323 7571486 -155028444 + AluJo SINE Alu 122 285 -27 405 0 0 0 chrX 7571486 7571531 -155028399 + (CA)n Simple_repeat Simple_repeat 2 46 0 477 0 0 0 chrX 7571577 7571630 -155028300 + (CA)n Simple_repeat Simple_repeat 2 54 0 206 220 20 0 chrX 7573417 7573467 -155026463 + C-rich Low_complexity Low_complexity 3 53 0 247 329 24 0 chrX 7574425 7574507 -155025423 + MIR3 SINE MIR 84 167 -41 25 0 0 0 chrX 7574507 7574532 -155025398 + AT_rich Low_complexity Low_complexity 1 25 0 369 270 191 15 chrX 7575495 7575699 -155024231 - L1ME4a LINE L1 -18 6103 5864 512 305 118 40 chrX 7575748 7576122 -155023808 - L1ME4a LINE L1 -370 5751 5349 2257 94 0 14 chrX 7576881 7577201 -155022729 - AluSg SINE Alu 0 316 1 1250 192 64 91 chrX 7577659 7577865 -155022065 - MLT1A1 LTR MaLR 0 365 172 1789 144 3 34 chrX 7577865 7578157 -155021773 - AluJo SINE Alu -18 294 12 1250 192 64 91 chrX 7578157 7578325 -155021605 - MLT1A1 LTR MaLR -193 172 1 200 200 18 0 chrX 7578397 7578452 -155021478 + CT-rich Low_complexity Low_complexity 4 59 0 264 300 38 0 chrX 7578453 7578533 -155021397 - L2 LINE L2 -5 3267 3185 2428 95 0 0 chrX 7578703 7579008 -155020922 - AluSc SINE Alu -4 305 1 1724 188 114 10 chrX 7580256 7580661 -155019269 - MLT1F1 LTR MaLR 0 567 121 2487 203 52 29 chrX 7580663 7581060 -155018870 - L1MA10 LINE L1 -2 6332 5936 447 289 21 46 chrX 7581060 7581299 -155018631 - L1PA14 LINE L1 -238 5923 5691 287 255 149 11 chrX 7581328 7581422 -155018508 - MLT1F1 LTR MaLR -437 130 24 1556 214 0 16 chrX 7581428 7581737 -155018193 - AluJo SINE Alu -8 304 1 445 288 75 29 chrX 7581780 7582058 -155017872 - L1ME2 LINE L1 -133 6031 5741 341 261 0 0 chrX 7582270 7582358 -155017572 - MER58A DNA MER1_type -19 88 1 1837 169 7 0 chrX 7583736 7584032 -155015898 - AluJo SINE Alu -12 300 3 1677 160 53 53 chrX 7584034 7584334 -155015596 - AluJo SINE Alu -12 300 1 736 217 0 0 chrX 7585669 7585807 -155014123 + Tigger4(Zombi) DNA MER2_type 1 138 -2593 * 2997 169 11 4 chrX 7585801 7586323 -155013607 + Tigger4(Zombi) DNA MER2_type 2206 2731 0 2027 128 3 29 chrX 7586453 7586765 -155013165 + AluJb SINE Alu 9 312 0 256 293 30 0 chrX 7587900 7587999 -155011931 + (CA)n Simple_repeat Simple_repeat 1 102 0 291 217 40 0 chrX 7588010 7588162 -155011768 + (CA)n Simple_repeat Simple_repeat 1 158 0 424 301 23 11 chrX 7588216 7588392 -155011538 + (CA)n Simple_repeat Simple_repeat 2 179 0 2798 74 8 0 chrX 7589120 7589471 -155010459 + THE1A LTR MaLR 1 354 -1 2011 136 33 0 chrX 7589613 7589915 -155010015 + AluJb SINE Alu 1 312 0 2370 91 0 0 chrX 7590111 7590421 -155009509 - AluSx SINE Alu 0 310 1 873 93 0 0 chrX 7590638 7590745 -155009185 + AluSq/x SINE Alu 29 135 -178 1637 166 22 4 chrX 7590745 7591016 -155008914 + AluJo SINE Alu 1 276 -36 200 119 0 24 chrX 7591274 7591316 -155008614 + (TG)n Simple_repeat Simple_repeat 2 42 0 1683 164 7 20 chrX 7592867 7593159 -155006771 + AluJb SINE Alu 1 288 -24 632 218 36 62 chrX 7593265 7593490 -155006440 + MER20 DNA MER1_type 1 219 0 309 282 0 0 chrX 7593589 7593674 -155006256 - MER3 DNA MER1_type -124 85 1 305 239 0 0 chrX 7593885 7593952 -155005978 - MLT1A1 LTR MaLR 0 365 299 1818 108 68 0 chrX 7594202 7594451 -155005479 - AluSx SINE Alu -46 266 1 293 0 0 26 chrX 7594689 7594727 -155005203 + (TTA)n Simple_repeat Simple_repeat 3 39 0 729 173 0 0 chrX 7594747 7594857 -155005073 - FLAM_C SINE Alu -32 111 2 2191 109 0 45 chrX 7595479 7595790 -155004140 - AluSx SINE Alu -15 297 1 500 231 151 5 chrX 7597359 7597545 -155002385 + MER20 DNA MER1_type 1 213 -6 23 0 0 0 chrX 7597625 7597648 -155002282 + AT_rich Low_complexity Low_complexity 1 23 0 1905 164 0 13 chrX 7597648 7597953 -155001977 + AluJo SINE Alu 1 301 -11 800 163 0 0 chrX 7599009 7599138 -155000792 - AluJb SINE Alu -2 310 182 2144 103 25 0 chrX 7599175 7599456 -155000474 - AluSx SINE Alu -22 290 3 2690 39 0 3 chrX 7601068 7601375 -154998555 + AluY SINE Alu 1 306 -5 3149 157 52 96 chrX 7601604 7602398 -154997532 - MER21A LTR ERV1 -19 912 154 1425 149 5 0 chrX 7602398 7602634 -154997296 + AluJb SINE Alu 76 312 0 699 188 0 0 chrX 7602781 7602898 -154997032 + FAM SINE Alu 58 174 -11 866 240 5 0 chrX 7602913 7603105 -154996825 + L1MB3 LINE L1 5984 6176 -7 2092 95 95 0 chrX 7603278 7603562 -154996368 + AluSx SINE Alu 1 311 -1 2011 136 0 13 chrX 7604462 7604789 -154995141 - AluSx SINE Alu 0 312 1 967 217 5 0 chrX 7607434 7607632 -154992298 + L1ME2 LINE L1 5201 5399 -747 450 255 34 13 chrX 7609219 7609368 -154990562 - MLT1H LTR MaLR -373 176 25 422 260 181 15 chrX 7609424 7609628 -154990302 + MIR SINE MIR 10 247 -15 1651 151 7 11 chrX 7609846 7610118 -154989812 - AluJo SINE Alu -39 273 3 2421 112 0 0 chrX 7610188 7610500 -154989430 - AluSx SINE Alu 0 312 1 1087 264 70 23 chrX 7610594 7610992 -154988938 + L1ME2 LINE L1 5717 6133 -31 332 284 20 93 chrX 7611039 7611243 -154988687 + L1MC5 LINE L1 7726 7914 -47 2165 134 153 5 chrX 7611449 7611822 -154988108 - MSTA LTR MaLR 0 428 1 9097 167 25 1 chrX 7611822 7613421 -154986509 - MSTA-int LTR MaLR 0 1651 15 2449 97 129 5 chrX 7613439 7613820 -154986110 - MSTA LTR MaLR 0 428 1 240 35 0 0 chrX 7614593 7614622 -154985308 + (TG)n Simple_repeat Simple_repeat 2 30 0 1729 157 50 7 chrX 7614623 7614904 -154985026 - AluJo SINE Alu -19 293 1 2412 93 0 13 chrX 7615414 7615762 -154984168 - AluSg SINE Alu 0 310 1 1694 152 65 37 chrX 7616025 7616380 -154983550 - MLT1A1 LTR MaLR 0 365 1 2240 73 52 0 chrX 7616420 7616706 -154983224 - AluSq SINE Alu -12 301 1 341 276 75 68 chrX 7616785 7616895 -154983035 + L1MDa LINE L1 2205 2313 -4227 1792 149 4 7 chrX 7616895 7617176 -154982754 + AluJo SINE Alu 1 280 -32 243 0 0 0 chrX 7617176 7617203 -154982727 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 341 276 75 68 chrX 7617203 7617399 -154982531 + L1MDa LINE L1 2312 2514 -4026 1858 138 3 49 chrX 7617401 7617726 -154982204 + AluJo SINE Alu 3 312 0 417 263 105 12 chrX 7618054 7618225 -154981705 - HAL1 LINE L1 -2296 211 25 1922 56 9 4 chrX 7618336 7618569 -154981361 + AluSq SINE Alu 70 303 -10 1850 191 34 29 chrX 7618591 7619037 -154980893 - MLT1D LTR MaLR 0 505 58 508 203 0 14 chrX 7619042 7619180 -154980750 + CT-rich Low_complexity Low_complexity 4 139 0 1793 172 7 14 chrX 7619758 7620055 -154979875 + AluJo SINE Alu 6 300 -12 2293 91 7 10 chrX 7620177 7620474 -154979456 + AluSq SINE Alu 1 296 -17 2826 153 35 28 chrX 7620968 7621536 -154978394 - L1MB3 LINE L1 -1 6182 5611 2212 108 3 20 chrX 7621536 7621842 -154978088 - AluSx SINE Alu -10 302 2 1946 124 41 21 chrX 7621844 7622134 -154977796 - AluJo SINE Alu -14 298 3 2003 156 11 0 chrX 7622136 7622495 -154977435 - L1MB3 LINE L1 -353 5830 5468 2048 93 21 21 chrX 7622500 7622790 -154977140 + AluSx SINE Alu 1 290 -22 672 199 7 7 chrX 7622797 7622933 -154976997 - LTR47A LTR ERVL -316 136 1 280 231 0 31 chrX 7622933 7622998 -154976932 - LTR49 LTR ERV1 -503 92 30 290 267 190 0 chrX 7623000 7623116 -154976814 - Charlie4 DNA MER1_type -12 1949 1812 1732 152 17 21 chrX 7623116 7623406 -154976524 + AluJo SINE Alu 3 291 -21 827 96 20 14 chrX 7623586 7623732 -154976198 + (TTCC)n Simple_repeat Simple_repeat 1 147 0 531 173 4 12 chrX 7623933 7624180 -154975750 + (CA)n Simple_repeat Simple_repeat 1 245 0 314 299 53 40 chrX 7624219 7624540 -154975390 - L1ME4a LINE L1 -209 5912 5588 2142 120 0 0 chrX 7624544 7624835 -154975095 - AluSx SINE Alu -21 291 1 457 167 0 0 chrX 7625219 7625291 -154974639 - FLAM_A SINE Alu -19 123 52 356 274 190 34 chrX 7625404 7625667 -154974263 + L1ME3A LINE L1 5852 6155 -15 1874 229 24 2 chrX 7625852 7626311 -154973619 + L1MB7 LINE L1 5458 5926 -258 567 319 22 22 chrX 7626309 7626622 -154973308 - L1ME LINE L1 -301 5820 5508 * 1698 162 0 23 chrX 7627750 7628059 -154971871 + AluJo SINE Alu 1 302 -10 331 210 12 25 chrX 7628109 7628190 -154971740 - L1MC5 LINE L1 -46 7915 7836 2084 125 0 0 chrX 7628261 7628558 -154971372 - AluSx SINE Alu -15 297 1 1622 183 10 3 chrX 7628848 7629149 -154970781 - AluJb SINE Alu -9 303 1 244 223 96 71 chrX 7629208 7629348 -154970582 - L1MC5 LINE L1 -408 7587 7260 305 223 31 52 chrX 7629391 7629502 -154970428 - L1MC4 LINE L1 -637 7251 7063 693 213 4 12 chrX 7629502 7629766 -154970164 + CT-rich Low_complexity Low_complexity 1 261 0 857 180 0 6 chrX 7629789 7629967 -154969963 + CT-rich Low_complexity Low_complexity 4 180 0 1220 170 4 42 chrX 7629998 7630239 -154969691 - AluJo SINE Alu -44 268 37 677 110 80 0 chrX 7630308 7630408 -154969522 + FLAM_A SINE Alu 20 127 -15 257 235 0 106 chrX 7630410 7630495 -154969435 - L1MC5 LINE L1 -852 7109 7034 1495 153 19 0 chrX 7630563 7630824 -154969106 - AluJb SINE Alu -3 309 44 394 256 27 94 chrX 7630897 7631061 -154968869 - L1MC5 LINE L1 -109 7852 7705 1933 87 79 4 chrX 7631061 7631338 -154968592 - AluSc SINE Alu -11 298 1 394 256 27 94 chrX 7631338 7631396 -154968534 - L1MC5 LINE L1 -256 7705 7645 21 36 0 0 chrX 7631407 7631435 -154968495 + AT_rich Low_complexity Low_complexity 1 28 0 720 165 0 9 chrX 7631447 7631562 -154968368 - FLAM_C SINE Alu -28 115 2 362 238 80 23 chrX 7631599 7631782 -154968148 - L1MC4 LINE L1 -796 7074 6829 2405 93 0 0 chrX 7632149 7632460 -154967470 - AluSx SINE Alu -1 311 1 918 89 0 0 chrX 7632521 7632644 -154967286 - AluY SINE Alu -16 295 173 930 128 64 0 chrX 7633040 7633212 -154966718 - L1MB7 LINE L1 -1 6183 6001 525 274 82 29 chrX 7633215 7633423 -154966507 - L1MC4 LINE L1 -1125 6917 6699 1935 123 7 26 chrX 7633425 7633727 -154966203 - AluSx SINE Alu -16 296 1 1626 221 102 63 chrX 7633978 7634576 -154965354 - L1MC4a LINE L1 -1766 6042 5416 840 155 16 0 chrX 7634576 7634705 -154965225 - FLAM_C SINE Alu -2 131 1 1626 221 102 63 chrX 7634705 7634753 -154965177 - L1MC4a LINE L1 -2392 5416 5371 1084 237 94 51 chrX 7634776 7635147 -154964783 - MLT1F1 LTR MaLR -2 565 179 1119 183 17 38 chrX 7635185 7635425 -154964505 - AluJo SINE Alu -77 235 1 395 311 26 32 chrX 7635425 7635596 -154964334 - MLT1F1 LTR MaLR -376 166 1 461 304 91 70 chrX 7635596 7635857 -154964073 - L1MC4a LINE L1 -800 5346 5073 2113 139 14 17 chrX 7635857 7635930 -154964000 - MER2 DNA MER2_type 0 344 272 1955 144 0 3 chrX 7635930 7636222 -154963708 + AluSx SINE Alu 5 295 -17 2113 139 14 17 chrX 7636222 7636493 -154963437 - MER2 DNA MER2_type -72 272 1 461 304 91 70 chrX 7636493 7636603 -154963327 - L1MC4a LINE L1 -1073 5073 4967 2091 115 7 0 chrX 7636606 7636901 -154963029 - AluSx SINE Alu -6 306 10 2414 154 75 97 chrX 7637032 7637591 -154962339 - MLT2B3 LTR ERVL -7 547 1 323 293 13 51 chrX 7637677 7637834 -154962096 - L1MC4a LINE L1 -1487 4659 4509 504 277 0 0 chrX 7637919 7638056 -154961874 - L1ME LINE L1 -427 5739 5603 1950 107 50 7 chrX 7638561 7638860 -154961070 + AluSx SINE Alu 1 312 0 322 130 0 0 chrX 7638918 7638964 -154960966 - Alu SINE Alu -257 46 1 2617 142 9 34 chrX 7639509 7639946 -154959984 - MSTB LTR MaLR 0 426 1 363 228 87 11 chrX 7639968 7640060 -154959870 - MER5A DNA MER1_type -89 100 2 1326 122 173 0 chrX 7640390 7640627 -154959303 - AluJb SINE Alu -14 298 21 2178 94 74 12 chrX 7640948 7641287 -154958643 + LTR4 LTR ERV1 237 596 0 1558 170 7 0 chrX 7641287 7641564 -154958366 - AluJb SINE Alu -33 279 1 2382 73 0 0 chrX 7641591 7641894 -154958036 + AluY SINE Alu 1 303 -8 1106 119 0 0 chrX 7641926 7642094 -154957836 - L1MA5A LINE L1 0 6297 6130 665 184 22 15 chrX 7642126 7642262 -154957668 - FRAM SINE Alu -8 168 32 525 111 46 19 chrX 7642262 7642370 -154957560 - L1MA5A LINE L1 -166 6131 6021 267 342 141 16 chrX 7642471 7642655 -154957275 + L2 LINE L2 2471 2677 -637 2217 106 0 3 chrX 7643759 7644071 -154955859 - AluSx SINE Alu -1 311 1 416 319 38 23 chrX 7644214 7644477 -154955453 + L1PB3 LINE L1 5559 5825 -329 * 3282 164 13 0 chrX 7644268 7644822 -154955108 + L1MC1 LINE L1 5614 6174 -159 1874 177 9 0 chrX 7645645 7645973 -154953957 + L1MB7 LINE L1 5842 6172 -12 180 0 0 0 chrX 7645974 7645994 -154953936 + (TA)n Simple_repeat Simple_repeat 1 20 0 1332 97 0 0 chrX 7646347 7646523 -154953407 - AluSg/x SINE Alu -2 308 133 398 306 93 41 chrX 7646524 7646988 -154952942 + L1M4 LINE L1 4117 4604 -1542 239 273 0 15 chrX 7647172 7647238 -154952692 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 1787 154 0 13 chrX 7647387 7647685 -154952245 + AluJo SINE Alu 1 294 -18 1282 153 127 19 chrX 7647909 7648177 -154951753 - AluJb SINE Alu -13 299 3 986 100 7 0 chrX 7648177 7648317 -154951613 + Tigger1 DNA MER2_type 1794 1934 -484 3134 136 9 25 chrX 7648454 7648791 -154951139 + Tigger1 DNA MER2_type 1889 2217 -201 1929 122 7 10 chrX 7648791 7649087 -154950843 - AluJb SINE Alu -17 295 1 3134 136 9 25 chrX 7649087 7649278 -154950652 + Tigger1 DNA MER2_type 2217 2409 -9 369 75 0 0 chrX 7649278 7649331 -154950599 + (TG)n Simple_repeat Simple_repeat 1 53 0 2254 96 3 3 chrX 7649376 7649689 -154950241 + AluSp SINE Alu 1 313 0 333 191 143 12 chrX 7649926 7650010 -154949920 + L1ME4a LINE L1 6020 6114 -7 24 0 0 0 chrX 7650400 7650424 -154949506 + AT_rich Low_complexity Low_complexity 1 24 0 2125 93 7 0 chrX 7650430 7650720 -154949210 + AluSx SINE Alu 1 292 -20 4404 133 83 11 chrX 7650773 7651520 -154948410 + Tigger1 DNA MER2_type 789 1589 -829 746 155 148 0 chrX 7651919 7652061 -154947869 - Tigger1 DNA MER2_type -1467 951 789 186 43 0 0 chrX 7652091 7652114 -154947816 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chrX 7652697 7652722 -154947208 + AT_rich Low_complexity Low_complexity 1 25 0 2481 43 0 7 chrX 7653081 7653380 -154946550 - AluY SINE Alu -14 297 1 2806 90 16 38 chrX 7653435 7653610 -154946320 - L1MA3 LINE L1 0 6305 6128 2237 96 0 10 chrX 7653610 7653923 -154946007 - AluSg SINE Alu 0 310 1 2806 90 16 38 chrX 7653923 7654193 -154945737 - L1MA3 LINE L1 -177 6128 5870 273 291 70 25 chrX 7654196 7654354 -154945576 - L1ME4a LINE L1 -223 5898 5734 22 0 0 0 chrX 7654429 7654451 -154945479 + AT_rich Low_complexity Low_complexity 1 22 0 2110 86 0 4 chrX 7654495 7654775 -154945155 + AluSc SINE Alu 1 279 -30 381 43 0 0 chrX 7654783 7654830 -154945100 + (TA)n Simple_repeat Simple_repeat 1 47 0 278 285 86 7 chrX 7655118 7655269 -154944661 - L1ME LINE L1 -279 6165 6003 259 293 64 0 chrX 7655394 7655506 -154944424 - L1ME LINE L1 -747 5877 5757 228 274 74 30 chrX 7655521 7655656 -154944274 - L1ME LINE L1 -767 5683 5543 258 271 0 14 chrX 7655666 7655736 -154944194 - LTR33 LTR ERVL -10 511 443 300 257 0 0 chrX 7655740 7655810 -154944120 - MER2 DNA MER2_type -5 340 271 195 42 0 0 chrX 7655844 7655868 -154944062 + (TGG)n Simple_repeat Simple_repeat 3 26 0 432 151 0 14 chrX 7655873 7655946 -154943984 - FLAM_A SINE Alu -29 113 42 1605 132 11 44 chrX 7656006 7656279 -154943651 - MER2 DNA MER2_type -80 265 2 285 252 47 28 chrX 7656280 7656387 -154943543 - LTR33 LTR ERVL -76 445 337 433 248 88 55 chrX 7656723 7656997 -154942933 + LTR40b LTR ERVL 179 461 -1 1554 194 10 0 chrX 7657113 7657417 -154942513 + L1MA9 LINE L1 5966 6272 -40 1724 158 0 0 chrX 7657467 7657780 -154942150 + AluJo SINE Alu 5 317 0 2135 104 0 0 chrX 7657929 7658217 -154941713 + AluSx SINE Alu 1 288 -24 378 272 65 92 chrX 7658292 7658630 -154941300 - MLT1J2 LTR MaLR -119 331 3 2327 78 3 3 chrX 7658688 7658995 -154940935 - AluSc SINE Alu -2 307 1 431 316 94 38 chrX 7659070 7659336 -154940594 - L1ME LINE L1 -1304 5122 4842 2146 115 0 10 chrX 7659443 7659755 -154940175 - AluSx SINE Alu -3 309 1 248 275 55 11 chrX 7659766 7660012 -154939918 - L1MCa LINE L1 -4625 1801 1407 452 308 69 77 chrX 7660133 7660332 -154939598 - L1MCa LINE L1 -5504 912 716 2169 86 0 0 chrX 7660332 7660623 -154939307 + AluSx SINE Alu 1 291 -21 452 308 69 77 chrX 7660623 7660800 -154939130 - L1MCa LINE L1 -5700 716 539 712 229 77 39 chrX 7660988 7661214 -154938716 - L1MC/D LINE L1 -383 5738 5494 749 152 0 40 chrX 7661333 7661458 -154938472 + FLAM_A SINE Alu 4 123 -10 2193 64 0 67 chrX 7661466 7661795 -154938135 + AluY SINE Alu 1 307 -4 192 97 0 0 chrX 7661813 7661844 -154938086 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2017 92 3 14 chrX 7661853 7662136 -154937794 + AluSg1 SINE Alu 5 284 -25 186 133 0 0 chrX 7662136 7662166 -154937764 + (CA)n Simple_repeat Simple_repeat 1 30 0 1564 201 26 0 chrX 7662174 7662477 -154937453 + AluJo SINE Alu 1 311 -1 488 226 51 113 chrX 7662607 7662744 -154937186 - MER5A DNA MER1_type 0 189 66 2447 66 0 0 chrX 7662744 7663045 -154936885 - AluSc SINE Alu -8 301 1 488 226 51 113 chrX 7663045 7663102 -154936828 - MER5A DNA MER1_type -123 66 7 183 100 0 0 chrX 7663317 7663347 -154936583 + (CA)n Simple_repeat Simple_repeat 1 30 0 1023 139 69 56 chrX 7665062 7665278 -154934652 - MER20 DNA MER1_type 0 219 1 2150 74 11 3 chrX 7665344 7665628 -154934302 + AluSq SINE Alu 13 298 -15 260 68 91 23 chrX 7665662 7665706 -154934224 - MLT1A2 LTR MaLR 0 374 328 448 269 17 23 chrX 7665712 7665887 -154934043 - L1MC5 LINE L1 -714 7247 7074 2019 195 37 33 chrX 7666167 7666624 -154933306 - MLT1C LTR MaLR -2 465 7 674 225 11 78 chrX 7666853 7667044 -154932886 + MER45A DNA AcHobo 1 178 0 288 190 17 0 chrX 7667475 7667533 -154932397 - MER5A DNA MER1_type -122 67 9 1813 174 0 0 chrX 7667553 7667863 -154932067 + AluJb SINE Alu 1 310 -2 1799 206 49 62 chrX 7667905 7668375 -154931555 + MLT2B1 LTR ERVL 1 464 -56 258 32 0 0 chrX 7668383 7668414 -154931516 + (TC)n Simple_repeat Simple_repeat 1 31 0 198 0 0 0 chrX 7668414 7668436 -154931494 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 261 0 0 0 chrX 7668435 7668464 -154931466 + (GA)n Simple_repeat Simple_repeat 1 29 0 188 333 19 56 chrX 7668534 7668642 -154931288 + MIR SINE MIR 48 151 -111 1384 156 13 0 chrX 7668663 7668888 -154931042 + AluJb SINE Alu 62 289 -23 930 180 37 32 chrX 7668916 7669133 -154930797 - MER20 DNA MER1_type -1 218 1 336 48 0 0 chrX 7670959 7671001 -154928929 + (CA)n Simple_repeat Simple_repeat 1 42 0 336 24 0 0 chrX 7671002 7671043 -154928887 + (GA)n Simple_repeat Simple_repeat 2 42 0 213 284 37 46 chrX 7671378 7671487 -154928443 + MIR SINE MIR 113 220 -42 572 248 103 51 chrX 7671502 7671736 -154928194 - LTR16A1 LTR ERVL 0 457 212 186 42 0 0 chrX 7671911 7671935 -154927995 + MIR SINE MIR 113 136 -72 1038 149 0 6 chrX 7672837 7673012 -154926918 - AluJb SINE Alu -2 310 137 2278 58 20 3 chrX 7673027 7673321 -154926609 - AluSg SINE Alu -11 299 1 310 278 14 47 chrX 7674272 7674501 -154925429 + G-rich Low_complexity Low_complexity 1 221 0 236 29 0 29 chrX 7674682 7674716 -154925214 + (CGG)n Simple_repeat Simple_repeat 2 34 0 41 21 0 0 chrX 7674846 7674894 -154925036 + GC_rich Low_complexity Low_complexity 1 48 0 241 216 29 20 chrX 7674902 7675004 -154924926 + (CGG)n Simple_repeat Simple_repeat 2 104 0 30 83 0 0 chrX 7675050 7675122 -154924808 + GC_rich Low_complexity Low_complexity 1 72 0 26 44 6 0 chrX 7675283 7675372 -154924558 + GC_rich Low_complexity Low_complexity 1 47 0 2159 104 10 0 chrX 7678059 7678356 -154921574 + AluSx SINE Alu 1 300 -12 1845 146 0 31 chrX 7678468 7678790 -154921140 + AluJb SINE Alu 1 312 0 282 56 0 0 chrX 7679701 7679737 -154920193 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 204 40 0 0 chrX 7680477 7680502 -154919428 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1975 100 7 41 chrX 7680504 7680795 -154919135 - AluSx SINE Alu -31 281 1 195 42 0 0 chrX 7681348 7681372 -154918558 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 210 330 70 10 chrX 7681372 7681472 -154918458 - L2 LINE L2 -13 3300 3195 2893 124 62 11 chrX 7681928 7682378 -154917552 + MLT1D LTR MaLR 14 486 -19 287 122 0 0 chrX 7682381 7682422 -154917508 + MLT1D LTR MaLR 464 504 -1 228 284 80 23 chrX 7682499 7682587 -154917343 - MIR SINE MIR -8 254 162 721 122 0 17 chrX 7683101 7683216 -154916714 - FRAM SINE Alu -8 168 56 715 229 37 55 chrX 7683234 7683452 -154916478 - MER20 DNA MER1_type 0 219 6 228 111 0 0 chrX 7683793 7683829 -154916101 + (TG)n Simple_repeat Simple_repeat 1 36 0 1052 168 89 5 chrX 7684433 7684459 -154915471 - L1MB7 LINE L1 -29 6155 6133 2169 107 0 10 chrX 7684459 7684768 -154915162 + AluSx SINE Alu 5 310 -2 1052 168 89 5 chrX 7684768 7684955 -154914975 - L1MB7 LINE L1 -51 6133 5924 327 156 16 16 chrX 7684955 7685019 -154914911 + L1MD2 LINE L1 6282 6345 -14 25 31 0 0 chrX 7685060 7685092 -154914838 + AT_rich Low_complexity Low_complexity 1 32 0 313 167 0 0 chrX 7685122 7685170 -154914760 + L2 LINE L2 3261 3308 -5 919 169 23 68 chrX 7685390 7685609 -154914321 + MER20 DNA MER1_type 1 209 -10 390 280 147 56 chrX 7685604 7686032 -154913898 + MLT1L LTR MaLR 143 609 -6 * 659 151 155 87 chrX 7686295 7686514 -154913416 - L1MD3 LINE L1 -1 7994 7761 1138 197 66 31 chrX 7687078 7687398 -154912532 + L1MB8 LINE L1 5848 6178 0 2064 135 0 0 chrX 7687400 7687704 -154912226 - AluSx SINE Alu -6 306 3 1277 110 5 19 chrX 7688160 7688369 -154911561 + MER6 DNA MER2_type 659 864 -1 471 327 83 5 chrX 7688411 7688616 -154911314 + MIR SINE MIR 23 243 -19 1849 136 26 16 chrX 7688710 7689019 -154910911 + AluJb SINE Alu 1 312 0 368 157 16 15 chrX 7689254 7689339 -154910591 - MER58B DNA MER1_type -15 326 112 904 194 25 0 chrX 7689363 7689523 -154910407 - MER58A DNA MER1_type 0 166 3 2400 66 0 3 chrX 7689543 7689845 -154910085 - AluSg SINE Alu -9 301 1 1635 183 63 7 chrX 7689882 7690182 -154909748 + MER7A DNA MER2_type 32 346 0 1836 120 60 0 chrX 7690427 7690711 -154909219 + AluJo SINE Alu 1 301 -11 437 240 59 44 chrX 7691143 7691347 -154908583 + MER20 DNA MER1_type 2 208 -11 252 266 228 27 chrX 7691638 7691901 -154908029 - L2 LINE L2 -439 2875 2560 2267 83 0 0 chrX 7692188 7692476 -154907454 + AluSx SINE Alu 1 288 -24 25 0 0 0 chrX 7692531 7692556 -154907374 + AT_rich Low_complexity Low_complexity 1 25 0 187 51 0 51 chrX 7694973 7695012 -154904918 + (TA)n Simple_repeat Simple_repeat 2 38 0 1887 127 3 3 chrX 7695012 7695296 -154904634 - AluSx SINE Alu -28 284 1 234 275 100 0 chrX 7695347 7695427 -154904503 - MER5B DNA MER1_type -2 176 89 1362 112 10 10 chrX 7695508 7695713 -154904217 + AluSg/x SINE Alu 96 300 -12 1048 130 6 150 chrX 7695719 7695974 -154903956 - L1MB5 LINE L1 -15 6159 5937 511 172 35 35 chrX 7696141 7696257 -154903673 - L1MB5 LINE L1 -242 5936 5821 1043 156 0 6 chrX 7696259 7696426 -154903504 - AluJb SINE Alu -13 299 134 2569 144 21 88 chrX 7696426 7696707 -154903223 - L1MB5 LINE L1 -346 5828 5607 2457 64 0 0 chrX 7696707 7697018 -154902912 - AluY SINE Alu 0 311 1 2569 144 21 88 chrX 7697018 7697341 -154902589 - L1MB5 LINE L1 -567 5607 5264 2594 39 0 0 chrX 7697407 7697714 -154902216 - AluY SINE Alu -3 308 2 206 118 0 0 chrX 7698935 7698969 -154900961 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 2130 224 79 88 chrX 7699553 7700355 -154899575 - MER21B LTR ERV1 -69 794 1 278 262 83 12 chrX 7700450 7700534 -154899396 + MER5B DNA MER1_type 2 91 -87 396 241 60 9 chrX 7701246 7701362 -154898568 - Charlie8 DNA MER1_type -2152 265 144 645 123 85 0 chrX 7701390 7701496 -154898434 - FLAM_C SINE Alu -18 115 1 233 162 88 15 chrX 7701497 7701565 -154898365 - Charlie8 DNA MER1_type -2263 154 82 1755 161 31 3 chrX 7701945 7702236 -154897694 - AluSx SINE Alu -11 301 3 262 287 10 20 chrX 7702463 7702564 -154897366 - L1ME LINE L1 -343 5778 5679 869 221 40 25 chrX 7702594 7702793 -154897137 - MER20 DNA MER1_type -17 202 1 614 217 35 25 chrX 7702988 7703191 -154896739 - MLT1B LTR MaLR 0 383 173 580 220 112 25 chrX 7703230 7703416 -154896514 - MLT1B LTR MaLR -187 187 1 2414 188 86 57 chrX 7703416 7704244 -154895686 - MLT1B-int LTR MaLR 0 1735 591 222 246 0 0 chrX 7704245 7704359 -154895571 + (TCCA)n Simple_repeat Simple_repeat 2 115 0 2190 107 0 0 chrX 7705861 7706159 -154893771 - AluSq SINE Alu -15 298 1 189 0 0 0 chrX 7707387 7707408 -154892522 + (TTG)n Simple_repeat Simple_repeat 2 22 0 249 307 189 16 chrX 7708185 7708312 -154891618 + MIR SINE MIR 42 190 -72 21 36 0 0 chrX 7708575 7708603 -154891327 + AT_rich Low_complexity Low_complexity 1 28 0 468 266 70 6 chrX 7708992 7709163 -154890767 - L1ME1 LINE L1 -5 6161 5963 198 0 0 0 chrX 7709973 7709995 -154889935 + (GGCTG)n Simple_repeat Simple_repeat 4 25 0 1083 202 80 10 chrX 7710341 7710643 -154889287 + MER33 DNA MER1_type 2 324 0 227 259 17 0 chrX 7711107 7711165 -154888765 - MIR SINE MIR -132 130 72 1191 262 96 20 chrX 7712210 7712618 -154887312 - MLT1J2 LTR MaLR -11 439 1 1648 219 83 23 chrX 7714388 7714822 -154885108 + MLT1D LTR MaLR 1 460 -45 1890 161 15 6 chrX 7715744 7716080 -154883850 - L1MB7 LINE L1 -19 6165 5827 2182 141 78 15 chrX 7716080 7716476 -154883454 + Tigger2a DNA MER2_type 2 422 -12 1528 150 7 29 chrX 7716476 7716749 -154883181 - L1MB7 LINE L1 -357 5827 5561 238 212 15 0 chrX 7716757 7716823 -154883107 + L1ME4a LINE L1 5711 5777 -344 329 305 65 0 chrX 7717085 7717239 -154882691 + L1ME4a LINE L1 5860 6023 -98 1718 128 0 110 chrX 7717972 7718300 -154881630 + AluJb SINE Alu 5 296 -6 361 278 93 20 chrX 7718904 7719055 -154880875 - Tigger8 DNA MER2_type -270 396 235 2105 115 0 3 chrX 7719942 7720247 -154879683 - AluSx SINE Alu -8 304 1 805 69 0 0 chrX 7720600 7720701 -154879229 + HY3 scRNA scRNA 1 101 0 1615 164 34 10 chrX 7721008 7721306 -154878624 - AluJo SINE Alu -7 305 1 193 182 23 23 chrX 7721316 7721360 -154878570 + MIR SINE MIR 182 225 -37 270 0 0 0 chrX 7723339 7723369 -154876561 + (TG)n Simple_repeat Simple_repeat 2 31 0 960 220 28 5 chrX 7723441 7723655 -154876275 + MER20 DNA MER1_type 1 219 0 342 0 0 0 chrX 7724696 7724734 -154875196 + (TG)n Simple_repeat Simple_repeat 2 39 0 305 113 38 0 chrX 7724735 7724788 -154875142 - L1MB4 LINE L1 -14 6166 6112 1791 194 22 20 chrX 7724788 7725176 -154874754 - L1MB5 LINE L1 -9 6165 5762 445 299 128 6 chrX 7727041 7727205 -154872725 - L2 LINE L2 -3 3310 3127 1357 209 26 7 chrX 7728220 7728527 -154871403 - L1M4 LINE L1 -2449 3697 3385 875 259 49 0 chrX 7728534 7728739 -154871191 - MER58A DNA MER1_type -5 219 5 1957 220 101 11 chrX 7728743 7729352 -154870578 - L1M4 LINE L1 -2756 3390 2722 2153 89 0 26 chrX 7729352 7729656 -154870274 - AluSx SINE Alu -16 296 1 1957 220 101 11 chrX 7729656 7729670 -154870260 - L1M4 LINE L1 -3424 2722 2711 294 253 13 0 chrX 7729788 7729867 -154870063 - MER116 DNA Mariner 0 80 1 847 157 0 15 chrX 7730038 7730172 -154869758 + FLAM_C SINE Alu 1 132 -1 306 359 10 0 chrX 7731301 7731404 -154868526 - MIR SINE MIR -111 151 48 216 0 49 49 chrX 7731707 7731748 -154868182 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2059 87 11 0 chrX 7731750 7732026 -154867904 - AluSc SINE Alu -30 279 1 215 267 33 0 chrX 7732653 7732713 -154867217 + L3 LINE CR1 1471 1532 -45 966 215 47 19 chrX 7732718 7732932 -154866998 + MER58A DNA MER1_type 5 224 0 484 224 191 0 chrX 7732943 7733090 -154866840 - MER5B DNA MER1_type -3 175 1 1961 157 0 0 chrX 7733373 7733685 -154866245 - AluJb SINE Alu 0 312 1 2027 119 3 3 chrX 7734957 7735252 -154864678 + AluSx SINE Alu 1 295 -17 27 29 0 0 chrX 7735353 7735387 -154864543 + AT_rich Low_complexity Low_complexity 1 34 0 299 221 90 62 chrX 7735553 7735698 -154864232 - MLT1L LTR MaLR -2 613 465 2278 80 0 3 chrX 7735918 7736217 -154863713 - AluSc SINE Alu -11 298 1 227 263 71 0 chrX 7737670 7737769 -154862161 - L1ME4a LINE L1 -43 6078 5973 338 291 64 35 chrX 7738584 7738756 -154861174 - MER5A DNA MER1_type 0 189 13 458 214 45 0 chrX 7739424 7739536 -154860394 - MER3 DNA MER1_type -70 139 70 1579 79 0 0 chrX 7739632 7739834 -154860096 + AluSx SINE Alu 1 202 -110 1030 117 0 6 chrX 7739834 7739997 -154859933 + AluSg/x SINE Alu 150 311 -1 624 216 9 0 chrX 7740013 7740129 -154859801 - MER20 DNA MER1_type -102 117 1 340 191 44 15 chrX 7740130 7740198 -154859732 - MER3 DNA MER1_type -133 76 7 1533 199 87 9 chrX 7740462 7740809 -154859121 - MLT1A2 LTR MaLR 0 374 1 2133 106 3 0 chrX 7741129 7741430 -154858500 - AluSq SINE Alu -11 302 1 2172 104 13 7 chrX 7741813 7742120 -154857810 - AluSx SINE Alu -3 309 1 491 248 103 25 chrX 7743654 7743896 -154856034 - L1MC5 LINE L1 -37 7924 7664 888 200 49 42 chrX 7743969 7744254 -154855676 - L1MC5 LINE L1 -426 7535 7249 1127 250 5 24 chrX 7744339 7744446 -154855484 - L1ME LINE L1 -471 5699 5592 1268 155 8 76 chrX 7744446 7744697 -154855233 - MER46A DNA MER2_type -1 235 2 1127 250 5 24 chrX 7744697 7744881 -154855049 - L1ME LINE L1 -578 5592 5409 2243 95 0 7 chrX 7745197 7745503 -154854427 - AluSx SINE Alu -8 304 1 725 280 109 18 chrX 7745913 7746252 -154853678 + L2 LINE L2 2913 3282 -31 270 290 42 3 chrX 7747510 7747609 -154852321 + MIR SINE MIR 43 150 -58 569 255 39 39 chrX 7748963 7749167 -154850763 - MIR SINE MIR -28 234 31 228 163 0 0 chrX 7749525 7749568 -154850362 + GA-rich Low_complexity Low_complexity 2 44 0 198 167 0 0 chrX 7750377 7750413 -154849517 + (CA)n Simple_repeat Simple_repeat 2 37 0 819 93 14 72 chrX 7750439 7750578 -154849352 + MER2 DNA MER2_type 2 132 -213 1784 151 14 0 chrX 7750578 7750862 -154849068 - AluJb SINE Alu -13 299 12 1042 164 99 5 chrX 7750870 7751083 -154848847 - MLT1C LTR MaLR -234 233 1 290 302 129 28 chrX 7751149 7751397 -154848533 - L1MC4a LINE L1 -1756 6052 5780 536 220 10 0 chrX 7751871 7751971 -154847959 + MER5A DNA MER1_type 55 155 -34 1786 149 6 32 chrX 7752580 7752896 -154847034 + AluJo SINE Alu 1 308 -4 548 184 73 112 chrX 7753931 7754164 -154845766 - MER58A DNA MER1_type 0 224 1 1872 221 156 29 chrX 7755318 7755844 -154844086 - MLT1E LTR MaLR 0 593 1 181 221 110 110 chrX 7756049 7756185 -154843745 + L3b LINE CR1 1183 1318 -265 1507 139 82 36 chrX 7756278 7756558 -154843372 + AluJo SINE Alu 1 293 -19 2462 56 0 0 chrX 7757057 7757360 -154842570 - AluY SINE Alu -8 303 1 421 246 27 0 chrX 7759770 7759880 -154840050 + MER20 DNA MER1_type 104 216 -3 275 260 122 8 chrX 7759927 7760050 -154839880 + L2 LINE L2 2791 2927 -387 2068 192 123 9 chrX 7760123 7760570 -154839360 + MLT1D LTR MaLR 8 505 0 309 290 264 39 chrX 7760574 7760884 -154839046 + L2 LINE L2 2934 3313 0 366 259 45 9 chrX 7761964 7762076 -154837854 - L1MC4 LINE L1 -1315 6727 6612 2832 129 33 87 chrX 7763366 7763908 -154836022 - MLT2B2 LTR ERVL 0 515 3 2141 90 0 75 chrX 7764108 7764442 -154835488 - AluSx SINE Alu -3 309 1 300 339 56 17 chrX 7767855 7768035 -154831895 + MER117 DNA MER1_type 4 190 -7 182 182 227 0 chrX 7772910 7772954 -154826976 + MIR SINE MIR 95 148 -114 2502 20 0 23 chrX 7773028 7773327 -154826603 - AluY SINE Alu -19 292 1 486 163 23 0 chrX 7773444 7773530 -154826400 - Charlie1 DNA MER1_type 0 2761 2674 1015 243 50 38 chrX 7773598 7773690 -154826240 - Charlie1 DNA MER1_type -74 2687 2598 1908 152 0 0 chrX 7773690 7773986 -154825944 + AluJb SINE Alu 1 296 -16 1015 243 50 38 chrX 7773986 7774234 -154825696 - Charlie1 DNA MER1_type -163 2598 2343 348 278 0 14 chrX 7774232 7774304 -154825626 - Charlie1 DNA MER1_type -2690 71 1 * 410 188 10 86 chrX 7774625 7774780 -154825150 - MIR SINE MIR -67 141 2 260 258 11 67 chrX 7774921 7775010 -154824920 - L2 LINE L2 0 3313 3230 204 204 37 0 chrX 7775271 7775337 -154824593 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 918 128 0 0 chrX 7775338 7775510 -154824420 + (CCCA)n Simple_repeat Simple_repeat 2 173 0 258 328 51 26 chrX 7776233 7776428 -154823502 - MIR SINE MIR -50 212 13 694 151 227 54 chrX 7777952 7778137 -154821793 + MER20 DNA MER1_type 2 218 -1 308 328 121 23 chrX 7778197 7778371 -154821559 + MIR3 SINE MIR 5 195 -13 1863 178 10 0 chrX 7782651 7782960 -154816970 - AluJo SINE Alu 0 312 1 1076 107 0 0 chrX 7782967 7783098 -154816832 - AluSq/x SINE Alu -181 131 1 2380 106 0 0 chrX 7783139 7783450 -154816480 + AluSx SINE Alu 1 311 -1 302 247 14 0 chrX 7785846 7785919 -154814011 + CT-rich Low_complexity Low_complexity 1 74 0 594 277 33 5 chrX 7786103 7786287 -154813643 + MER53 DNA DNA 1 189 0 2131 107 0 14 chrX 7786700 7786981 -154812949 + AluSx SINE Alu 3 279 -33 315 71 0 0 chrX 7786981 7787023 -154812907 + (CA)n Simple_repeat Simple_repeat 1 42 0 1403 144 156 0 chrX 7787044 7787294 -154812636 - AluJo SINE Alu -13 289 1 611 263 105 27 chrX 7788519 7788783 -154811147 - L1MB8 LINE L1 0 6178 5891 379 278 32 8 chrX 7790337 7790463 -154809467 - L1MC4 LINE L1 -1 8041 7913 1924 125 23 38 chrX 7790721 7791066 -154808864 + L1MB2 LINE L1 5550 5889 -282 268 158 13 145 chrX 7791066 7791142 -154808788 + MER21B LTR ERV1 9 74 -789 812 11 0 0 chrX 7791147 7791236 -154808694 - AluY SINE Alu -45 266 178 1023 161 84 77 chrX 7791278 7791399 -154808531 + L1MB2 LINE L1 5871 5990 -181 4592 133 20 19 chrX 7791399 7791961 -154807969 - LTR39 LTR ERV1 0 783 218 2255 115 0 13 chrX 7791961 7792275 -154807655 - AluSx SINE Alu -2 310 1 4592 133 20 19 chrX 7792275 7792494 -154807436 - LTR39 LTR ERV1 -565 218 1 1023 161 84 77 chrX 7792494 7792670 -154807260 + L1MB2 LINE L1 5990 6170 -1 942 269 72 74 chrX 7792816 7792933 -154806997 - L2 LINE L2 -514 2800 2684 1863 199 35 2 chrX 7792933 7793360 -154806570 - L1MB5 LINE L1 -8 6166 5726 942 269 72 74 chrX 7793360 7793756 -154806174 - L2 LINE L2 -630 2684 2288 417 264 40 40 chrX 7794477 7794651 -154805279 - MER5B DNA MER1_type 0 178 5 236 29 0 29 chrX 7795797 7795831 -154804099 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 531 0 0 0 chrX 7796443 7796502 -154803428 + (TA)n Simple_repeat Simple_repeat 2 60 0 234 0 0 0 chrX 7796502 7796528 -154803402 + (TG)n Simple_repeat Simple_repeat 2 27 0 2316 108 0 0 chrX 7796641 7796938 -154802992 + AluSx SINE Alu 1 297 -15 834 225 14 28 chrX 7796958 7797176 -154802754 - MER20 DNA MER1_type -1 218 4 347 273 166 32 chrX 7797573 7797760 -154802170 - L1ME4a LINE L1 -225 5896 5685 330 309 10 0 chrX 7797800 7797897 -154802033 - L1ME4a LINE L1 -531 5590 5493 243 0 0 0 chrX 7798739 7798766 -154801164 + (A)n Simple_repeat Simple_repeat 1 27 0 2003 149 10 0 chrX 7799025 7799320 -154800610 - AluSx SINE Alu -14 298 1 312 308 77 72 chrX 7799417 7799638 -154800292 - L1ME4a LINE L1 -219 5902 5681 1706 173 33 0 chrX 7799652 7799924 -154800006 - AluJb SINE Alu -31 281 1 329 214 19 48 chrX 7800064 7800167 -154799763 - L1ME3A LINE L1 -184 5986 5887 1702 164 88 6 chrX 7800173 7800515 -154799415 - L1MB5 LINE L1 -6 6168 5799 337 261 0 0 chrX 7800577 7800646 -154799284 - L2 LINE L2 0 3313 3245 1301 200 0 0 chrX 7802893 7803123 -154796807 - AluJo SINE Alu -7 305 76 509 263 167 6 chrX 7803954 7804319 -154795611 - L1MC5 LINE L1 -49 7912 7489 * 3420 169 77 6 chrX 7804298 7805000 -154794930 - L1MB8 LINE L1 0 6178 5427 2248 108 0 0 chrX 7805006 7805292 -154794638 - AluSx SINE Alu -22 290 5 228 324 0 0 chrX 7805397 7805471 -154794459 + (TA)n Simple_repeat Simple_repeat 2 75 0 337 215 75 0 chrX 7805474 7805581 -154794349 - L1MC4a LINE L1 -1834 5974 5860 657 221 0 0 chrX 7805583 7805714 -154794216 + FLAM_A SINE Alu 1 131 -2 1027 243 102 25 chrX 7805738 7806141 -154793789 - MLT1C LTR MaLR -6 451 21 245 136 25 86 chrX 7806163 7806244 -154793686 - MLT1C-int LTR MaLR -1 1370 1295 846 265 82 60 chrX 7806292 7806361 -154793569 - L1MC4a LINE L1 -2021 5787 5721 2427 82 0 0 chrX 7806361 7806653 -154793277 + AluSg SINE Alu 1 292 -18 846 265 82 60 chrX 7806653 7806706 -154793224 - L1MC4a LINE L1 -2087 5721 5671 712 143 15 15 chrX 7806706 7806839 -154793091 - FLAM_C SINE Alu 0 133 1 846 265 82 60 chrX 7806839 7807081 -154792849 - L1MC4a LINE L1 -2137 5671 5414 555 289 91 9 chrX 7807091 7807433 -154792497 - L1MC4a LINE L1 -1378 4768 4399 2024 139 3 10 chrX 7807561 7807856 -154792074 + AluJo SINE Alu 1 293 -19 2369 91 3 0 chrX 7807858 7808155 -154791775 + AluSg SINE Alu 1 298 -12 2508 166 37 68 chrX 7808158 7808476 -154791454 - MER21B LTR ERV1 -254 609 314 1968 55 0 0 chrX 7808476 7808733 -154791197 - L1PA5 LINE L1 -3 6151 5895 2508 166 37 68 chrX 7808733 7808975 -154790955 - MER21B LTR ERV1 -549 314 66 2161 129 7 3 chrX 7809001 7809311 -154790619 + AluSq SINE Alu 3 313 0 210 248 78 39 chrX 7809372 7809501 -154790429 + L2 LINE L2 2912 3045 -227 1600 173 78 30 chrX 7809551 7809922 -154790008 - MLT1B LTR MaLR 0 390 2 246 299 55 37 chrX 7809966 7810130 -154789800 + L2 LINE L2 3106 3272 0 2232 183 40 36 chrX 7810142 7810640 -154789290 - MLT1D LTR MaLR -2 503 4 898 198 46 0 chrX 7810998 7811195 -154788735 + MER3 DNA MER1_type 3 208 -1 344 296 86 49 chrX 7811349 7811511 -154788419 - MER63B DNA MER1_type -268 168 1 225 0 0 0 chrX 7811997 7812022 -154787908 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 437 138 9 207 chrX 7812135 7812229 -154787701 - MER96B DNA MER1_type? 0 417 388 2518 99 0 0 chrX 7812229 7812542 -154787388 + AluSq SINE Alu 1 313 0 437 138 9 207 chrX 7812542 7812664 -154787266 - MER96B DNA MER1_type? -29 388 244 244 279 95 68 chrX 7812943 7813090 -154786840 - MIR SINE MIR -38 224 74 1740 109 29 0 chrX 7813589 7813828 -154786102 + AluSx SINE Alu 46 291 -21 261 136 45 0 chrX 7813828 7813894 -154786036 + (TA)n Simple_repeat Simple_repeat 2 70 0 785 151 65 121 chrX 7814307 7814539 -154785391 - MER20 DNA MER1_type 0 219 1 1071 113 0 0 chrX 7814642 7814783 -154785147 + FRAM SINE Alu 20 160 -16 268 359 34 0 chrX 7814803 7814920 -154785010 + L3b LINE CR1 1254 1374 -209 477 301 62 43 chrX 7815126 7815542 -154784388 - L1ME4a LINE L1 -1 6120 5697 298 325 48 66 chrX 7819222 7819329 -154780601 + MIR3 SINE MIR 45 149 -59 1282 126 14 31 chrX 7819329 7819552 -154780378 - MER20 DNA MER1_type 0 219 1 298 325 48 66 chrX 7819552 7819610 -154780320 + MIR3 SINE MIR 149 207 -1 263 250 100 10 chrX 7819888 7819988 -154779942 + MIR SINE MIR 83 191 -71 285 51 0 0 chrX 7820489 7820528 -154779402 + (TC)n Simple_repeat Simple_repeat 1 39 0 298 288 38 57 chrX 7820760 7821000 -154778930 + L1MC4 LINE L1 7452 7679 -285 1203 246 112 35 chrX 7821072 7821370 -154778560 + MLT1F1 LTR MaLR 68 416 -151 2370 95 0 3 chrX 7821370 7821674 -154778256 - AluSx SINE Alu -9 303 1 1203 246 112 35 chrX 7821674 7821839 -154778091 + MLT1F1 LTR MaLR 416 567 0 1248 192 12 8 chrX 7821943 7822193 -154777737 - Charlie1b DNA MER1_type -268 255 5 321 313 121 6 chrX 7822194 7822360 -154777570 + L1MC4 LINE L1 7858 8042 0 2262 103 7 0 chrX 7822758 7823059 -154776871 - AluSx SINE Alu -9 303 1 1190 178 5 0 chrX 7823111 7823319 -154776611 - MER20 DNA MER1_type 0 219 11 533 281 66 16 chrX 7823495 7823976 -154775954 - L2 LINE L2 -252 3061 2553 238 314 29 0 chrX 7824267 7824369 -154775561 + L2 LINE L2 2873 2977 -336 253 219 0 0 chrX 7824525 7824589 -154775341 + L2 LINE L2 2922 2985 -328 602 234 0 0 chrX 7825499 7825627 -154774303 + MLT1B LTR MaLR 1 128 -262 578 178 0 0 chrX 7825638 7825739 -154774191 + MLT1B LTR MaLR 283 383 -7 209 137 260 0 chrX 7825917 7825990 -154773940 + MIR SINE MIR 47 138 -124 1092 206 50 21 chrX 7826779 7827017 -154772913 + MLT1F LTR MaLR 7 251 -291 720 201 126 0 chrX 7827049 7827223 -154772707 + MLT1F LTR MaLR 343 538 -4 1093 217 96 35 chrX 7827974 7828319 -154771611 - L1ME3A LINE L1 -3 6167 5802 334 250 75 19 chrX 7828328 7828488 -154771442 - L1MDa LINE L1 -4763 1777 1609 25 65 0 0 chrX 7828939 7828985 -154770945 + AT_rich Low_complexity Low_complexity 1 46 0 2454 90 7 0 chrX 7829119 7829429 -154770501 - AluSx SINE Alu 0 312 1 198 351 78 0 chrX 7829653 7829730 -154770200 - L2 LINE L2 -69 3203 3121 28 29 0 0 chrX 7829767 7829802 -154770128 + AT_rich Low_complexity Low_complexity 1 35 0 821 235 11 0 chrX 7829880 7830067 -154769863 + MER5A DNA MER1_type 1 189 0 2267 89 0 20 chrX 7830226 7830529 -154769401 - AluSx SINE Alu -15 297 1 260 243 37 37 chrX 7830542 7830649 -154769281 - L1ME3A LINE L1 -971 5175 5069 644 247 130 53 chrX 7830745 7830933 -154768997 - LTR16C LTR ERVL 0 491 278 3499 168 7 2 chrX 7830933 7831492 -154768438 - MER68 LTR ERV1 0 562 1 644 247 130 53 chrX 7831492 7831550 -154768380 - LTR16C LTR ERVL -213 278 226 278 177 65 16 chrX 7831535 7831597 -154768333 + MER68 LTR ERV1 370 434 -128 * 225 65 0 0 chrX 7831974 7832005 -154767925 + (TG)n Simple_repeat Simple_repeat 1 31 0 215 178 44 0 chrX 7832567 7832612 -154767318 + MER5A DNA MER1_type 63 109 -80 582 256 18 0 chrX 7832664 7832828 -154767102 - MER5B DNA MER1_type -7 171 5 246 207 35 0 chrX 7833020 7833078 -154766852 + MER5A DNA MER1_type 50 109 -80 764 223 31 0 chrX 7833251 7833444 -154766486 - MER20 DNA MER1_type -7 212 14 205 307 67 0 chrX 7833873 7833948 -154765982 - MIR SINE MIR -77 185 106 259 233 58 35 chrX 7834285 7834371 -154765559 - L1ME3A LINE L1 -219 5951 5864 876 118 0 0 chrX 7835198 7835334 -154764596 + (TC)n Simple_repeat Simple_repeat 2 137 0 239 237 0 34 chrX 7835562 7835621 -154764309 + L2 LINE L2 3239 3295 -18 934 228 13 35 chrX 7835635 7835863 -154764067 + MER58A DNA MER1_type 1 223 -1 1396 246 66 22 chrX 7836255 7836369 -154763561 + L1ME3A LINE L1 5694 5801 -369 1656 203 15 12 chrX 7836369 7836709 -154763221 + MER58B DNA MER1_type 1 341 0 1396 246 66 22 chrX 7836709 7837046 -154762884 + L1ME3A LINE L1 5801 6165 -5 3333 146 26 36 chrX 7837065 7837669 -154762261 + L1MB7 LINE L1 5576 6173 -11 213 60 20 40 chrX 7838177 7838227 -154761703 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 1001 266 24 20 chrX 7839092 7839340 -154760590 - MIR SINE MIR -5 257 9 246 247 86 11 chrX 7839447 7839540 -154760390 + L1ME4a LINE L1 5977 6076 -45 828 210 54 114 chrX 7839568 7839842 -154760088 + MLT1G LTR MaLR 11 212 -378 2626 67 3 0 chrX 7839842 7840154 -154759776 + AluSp SINE Alu 1 313 0 828 210 54 114 chrX 7840154 7840333 -154759597 + MLT1G LTR MaLR 212 400 -190 2011 152 16 7 chrX 7840427 7840736 -154759194 + AluJb SINE Alu 1 312 0 227 313 83 28 chrX 7840766 7840910 -154759020 - L2 LINE L2 -187 3085 2934 470 198 78 54 chrX 7841607 7841766 -154758164 - MLT1H LTR MaLR -6 589 382 2360 95 0 0 chrX 7841777 7842073 -154757857 - AluSx SINE Alu -16 296 1 2877 206 64 18 chrX 7843606 7844229 -154755701 - MER82 DNA MER2_type -1 652 1 200 271 0 0 chrX 7844846 7844894 -154755036 + L2 LINE L2 3251 3298 -15 367 353 25 34 chrX 7844945 7845183 -154754747 - L2 LINE L2 -218 3054 2819 1158 190 9 0 chrX 7846078 7846294 -154753636 + MER58A DNA MER1_type 7 224 0 182 323 32 0 chrX 7846298 7846360 -154753570 - L2 LINE L2 -2912 402 339 1747 167 21 7 chrX 7847274 7847561 -154752369 - AluJb SINE Alu -21 291 1 290 237 122 53 chrX 7848720 7848851 -154751079 + MER5B DNA MER1_type 39 178 0 473 124 33 91 chrX 7849328 7849449 -154750481 + L1MA9 LINE L1 5901 6014 -298 1834 234 102 24 chrX 7900136 7900717 -154699213 + MLT1E2 LTR MaLR 1 626 0 318 304 94 7 chrX 7901346 7901484 -154698446 + MIR SINE MIR 95 244 -18 849 146 15 0 chrX 7901937 7902067 -154697863 + FLAM_C SINE Alu 2 133 0 1372 169 92 43 chrX 7903018 7903343 -154696587 + MER58B DNA MER1_type 1 341 0 251 269 0 0 chrX 7903461 7903513 -154696417 + (CA)n Simple_repeat Simple_repeat 1 52 0 2191 70 3 3 chrX 7903640 7903925 -154696005 - AluY SINE Alu 0 311 27 1846 127 29 0 chrX 7904055 7904370 -154695560 - L1MB7 LINE L1 0 6184 5861 242 222 0 0 chrX 7904579 7904624 -154695306 - L2 LINE L2 -2 3270 3226 26 64 0 0 chrX 7904778 7904825 -154695105 + AT_rich Low_complexity Low_complexity 1 47 0 405 291 132 35 chrX 7905338 7905678 -154694252 + L3 LINE CR1 1197 1569 -8 8331 85 5 1 chrX 7906805 7908020 -154691910 - L1P LINE L1 -881 5265 4046 2177 130 3 0 chrX 7908112 7908411 -154691519 + AluJo SINE Alu 1 300 -12 347 327 44 44 chrX 7908489 7908648 -154691282 - L2 LINE L2 -84 3188 3030 423 136 0 12 chrX 7909014 7909095 -154690835 - L1MA5 LINE L1 0 6300 6221 28 71 0 0 chrX 7909127 7909183 -154690747 + AT_rich Low_complexity Low_complexity 1 56 0 411 294 33 50 chrX 7909444 7909624 -154690306 + MIR SINE MIR 78 254 -8 500 303 28 39 chrX 7910647 7910825 -154689105 - MIR3 SINE MIR -17 191 16 997 148 0 0 chrX 7911471 7911620 -154688310 - FAM SINE Alu -35 150 2 308 271 153 0 chrX 7911805 7911923 -154688007 + MLT1J LTR MaLR 327 462 -49 522 229 123 29 chrX 7911993 7912237 -154687693 + HAL1 LINE L1 2241 2507 0 201 74 0 0 chrX 7913872 7913899 -154686031 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 2245 112 0 0 chrX 7914321 7914616 -154685314 - AluSx SINE Alu -17 295 1 644 257 102 0 chrX 7914616 7914803 -154685127 - MIR SINE MIR -44 218 13 249 274 66 47 chrX 7914813 7914919 -154685011 - MIR SINE MIR -138 124 17 201 348 87 43 chrX 7915398 7915651 -154684279 - L2 LINE L2 -9 3263 3000 258 81 0 0 chrX 7916241 7916278 -154683652 + (GGAGAA)n Simple_repeat Simple_repeat 4 40 0 22 56 0 0 chrX 7916705 7916741 -154683189 + AT_rich Low_complexity Low_complexity 1 36 0 1594 153 64 21 chrX 7917523 7917804 -154682126 + AluJb SINE Alu 3 295 -17 2406 82 7 3 chrX 7917807 7918111 -154681819 + AluSp SINE Alu 1 305 -8 436 129 0 24 chrX 7918131 7918216 -154681714 + (GAAAA)n Simple_repeat Simple_repeat 3 85 0 267 339 58 6 chrX 7918229 7918400 -154681530 - MIR SINE MIR -36 226 47 1264 144 22 10 chrX 7919799 7920166 -154679764 - MSTB2 LTR MaLR 0 457 13 1905 203 38 42 chrX 7920573 7921071 -154678859 + MLT1D LTR MaLR 1 496 -9 1116 126 0 18 chrX 7923031 7923239 -154676691 - AluSq SINE Alu 0 326 122 2326 106 0 0 chrX 7923257 7923558 -154676372 - AluSg SINE Alu -9 301 1 444 127 0 0 chrX 7923558 7923629 -154676301 + MSTB2 LTR MaLR 387 457 0 399 281 92 44 chrX 7923991 7924219 -154675711 + L2 LINE L2 3075 3313 0 28 0 0 0 chrX 7924360 7924388 -154675542 + AT_rich Low_complexity Low_complexity 1 28 0 656 136 39 0 chrX 7924388 7924491 -154675439 - U6 snRNA snRNA 0 107 1 1650 241 106 11 chrX 7924872 7925346 -154674584 + LTR40a LTR ERVL 1 519 0 183 231 58 19 chrX 7925588 7925640 -154674290 + L2 LINE L2 3219 3272 0 769 11 0 0 chrX 7926760 7926855 -154673075 + L1MA4A LINE L1 6202 6296 -7 281 198 109 50 chrX 7927134 7927235 -154672695 + MIR SINE MIR 133 239 -23 201 195 0 0 chrX 7928039 7928080 -154671850 + (TA)n Simple_repeat Simple_repeat 1 41 0 2227 98 3 0 chrX 7928080 7928376 -154671554 - AluSx SINE Alu -5 307 11 276 309 34 67 chrX 7928406 7928555 -154671375 + MIR SINE MIR 32 175 -87 347 248 24 24 chrX 7930069 7930194 -154669736 + (TA)n Simple_repeat Simple_repeat 2 126 0 189 0 0 0 chrX 7931623 7931644 -154668286 + (TAA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chrX 7932264 7932289 -154667641 + AT_rich Low_complexity Low_complexity 1 25 0 430 260 164 24 chrX 7935137 7935345 -154664585 - MER112 DNA MER1_type -7 253 17 991 179 36 20 chrX 7935401 7935597 -154664333 + MER58A DNA MER1_type 26 224 0 2063 130 0 33 chrX 7937219 7937520 -154662410 - AluJb SINE Alu -21 291 1 1069 238 5 0 chrX 7938285 7938508 -154661422 + MER58A DNA MER1_type 1 224 0 477 250 64 68 chrX 7938594 7938814 -154661116 - L2 LINE L2 -10 3303 3085 3030 167 4 15 chrX 7938987 7939532 -154660398 - L1MB8 LINE L1 -13 6165 5627 1276 181 115 44 chrX 7939533 7939803 -154660127 - AluJo SINE Alu -23 289 1 354 291 21 43 chrX 7939834 7939975 -154659955 + L2 LINE L2 3176 3313 0 244 297 36 36 chrX 7939999 7940110 -154659820 - L2 LINE L2 0 3313 3203 252 0 0 0 chrX 7940208 7940236 -154659694 + (CA)n Simple_repeat Simple_repeat 2 29 0 329 307 132 19 chrX 7940319 7940871 -154659059 - L2 LINE L2 -187 3085 2485 262 299 90 0 chrX 7941016 7941150 -154658780 + MER117 DNA MER1_type 5 150 -47 258 245 132 9 chrX 7941121 7941227 -154658703 + MER117 DNA MER1_type 39 157 -40 * 398 300 57 4 chrX 7941338 7941568 -154658362 - L2 LINE L2 -1120 2194 1953 1214 206 5 0 chrX 7941575 7941793 -154658137 - MER58A DNA MER1_type -2 222 4 242 267 212 0 chrX 7941871 7942017 -154657913 - L2 LINE L2 -1549 1765 1589 499 264 88 23 chrX 7942329 7942545 -154657385 + MER46C DNA MER2_type 2 231 -107 3947 153 48 7 chrX 7943438 7944163 -154655767 - L1MB7 LINE L1 -1 6183 5429 575 183 80 51 chrX 7945247 7945422 -154654508 - MER5A DNA MER1_type -1 188 9 768 206 65 0 chrX 7946090 7946274 -154653656 - MIR SINE MIR -34 228 33 1923 116 59 33 chrX 7947711 7948014 -154651916 - AluSx SINE Alu -1 311 1 255 184 0 20 chrX 7948022 7948071 -154651859 - FLAM SINE Alu 0 133 86 1441 124 29 5 chrX 7948071 7948280 -154651650 - AluJo SINE Alu -92 220 7 2040 157 7 0 chrX 7948647 7948952 -154650978 - AluJb SINE Alu -5 307 1 1071 172 0 0 chrX 7949790 7949953 -154649977 + FRAM SINE Alu 1 163 -13 2033 128 3 17 chrX 7950038 7950155 -154649775 + AluJo SINE Alu 21 138 -174 2239 120 3 0 chrX 7950155 7950454 -154649476 + AluSx SINE Alu 1 300 -12 2033 128 3 17 chrX 7950454 7950632 -154649298 + AluJo SINE Alu 138 312 0 732 209 35 0 chrX 7951613 7951785 -154648145 + MER5B DNA MER1_type 1 178 0 724 179 8 134 chrX 7952471 7952717 -154647213 - MER58C DNA MER1_type 0 215 1 3026 131 24 24 chrX 7952758 7953155 -154646775 - MER34 LTR ERV1 -26 516 117 2450 87 0 0 chrX 7953155 7953464 -154646466 + AluY SINE Alu 1 309 -2 3026 131 24 24 chrX 7953464 7953570 -154646360 - MER34 LTR ERV1 -424 118 13 2102 129 0 35 chrX 7953571 7953882 -154646048 - AluJb SINE Alu -12 300 1 2303 115 0 3 chrX 7954871 7955184 -154644746 - AluSx SINE Alu 0 312 1 1552 204 8 66 chrX 7955321 7955683 -154644247 - MER58B DNA MER1_type 0 341 1 443 270 75 35 chrX 7956650 7956850 -154643080 - MIR SINE MIR -6 256 49 314 271 115 8 chrX 7956951 7957073 -154642857 - L2 LINE L2 -10 3262 3128 379 142 85 0 chrX 7957250 7957356 -154642574 + CT-rich Low_complexity Low_complexity 3 117 0 1494 179 4 12 chrX 7957364 7957621 -154642309 - AluJo SINE Alu -52 260 6 2572 153 42 0 chrX 7957802 7958252 -154641678 - L1MB5 LINE L1 0 6174 5706 540 217 112 28 chrX 7958274 7958417 -154641513 - L1ME3A LINE L1 -9 6161 6007 35 0 0 0 chrX 7958453 7958488 -154641442 + AT_rich Low_complexity Low_complexity 1 35 0 636 197 8 0 chrX 7958488 7958605 -154641325 - FLAM_C SINE Alu -15 118 1 2168 121 27 0 chrX 7958614 7958911 -154641019 - AluJb SINE Alu -7 305 1 27 0 0 0 chrX 7958920 7958947 -154640983 + AT_rich Low_complexity Low_complexity 1 27 0 2354 115 0 0 chrX 7958947 7959259 -154640671 + AluSx SINE Alu 1 312 0 366 217 24 12 chrX 7960713 7960796 -154639134 - MLT1I LTR MaLR -8 401 318 2339 135 14 3 chrX 7960825 7961187 -154638743 - MER47A DNA MER2_type 0 366 1 386 304 158 0 chrX 7962142 7962300 -154637630 - MER5A DNA MER1_type 0 189 7 226 318 19 28 chrX 7964464 7964571 -154635359 + L3b LINE CR1 1110 1215 -368 656 75 0 0 chrX 7964582 7964662 -154635268 + MADE1 DNA Mariner 1 80 0 198 0 0 0 chrX 7964861 7964883 -154635047 + (TA)n Simple_repeat Simple_repeat 1 22 0 1106 123 0 0 chrX 7965076 7965231 -154634699 - FRAM SINE Alu -24 152 1 1100 191 10 24 chrX 7965299 7965508 -154634422 - MER20 DNA MER1_type -13 206 1 2150 119 10 0 chrX 7965711 7966006 -154633924 - AluSx SINE Alu -14 298 1 264 226 139 29 chrX 7966144 7966281 -154633649 - L1ME4a LINE L1 -2 6119 5968 254 295 71 18 chrX 7966419 7966531 -154633399 - L2 LINE L2 0 3313 3196 295 299 13 0 chrX 7966948 7967025 -154632905 - L2 LINE L2 -7 3265 3188 1470 158 60 32 chrX 7969339 7969623 -154630307 + AluJo SINE Alu 1 292 -20 1145 175 38 0 chrX 7970453 7970664 -154629266 + MER20 DNA MER1_type 1 219 0 833 178 10 56 chrX 7970937 7971134 -154628796 - MER5A DNA MER1_type -1 188 1 468 35 0 0 chrX 7972257 7972315 -154627615 + (TG)n Simple_repeat Simple_repeat 2 59 0 180 0 0 0 chrX 7972550 7972570 -154627360 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 6678 77 34 1 chrX 7972570 7974027 -154625903 - L1PA10 LINE L1 -18 6150 4666 9368 123 8 14 chrX 7974027 7975499 -154624431 + L1P LINE L1 2661 4123 -2023 2113 167 53 7 chrX 7975484 7975897 -154624033 - L1MB7 LINE L1 -28 6156 5725 * 1755 101 57 10 chrX 7975913 7976210 -154623720 - L1MA3 LINE L1 0 6305 5995 206 295 45 62 chrX 7976210 7976322 -154623608 - MIR SINE MIR -63 145 36 1176 154 18 32 chrX 7976824 7977044 -154622886 + MER20 DNA MER1_type 3 219 0 347 121 0 0 chrX 7977289 7977347 -154622583 - L1MA2 LINE L1 0 6304 6247 907 149 0 0 chrX 7977349 7977367 -154622563 - L1MA2 LINE L1 -21 6283 6266 4339 28 0 0 chrX 7977367 7977867 -154622063 - L1PA5 LINE L1 -9 6145 5646 907 149 0 0 chrX 7977867 7977989 -154621941 - L1MA2 LINE L1 -37 6267 6143 * 1086 176 0 5 chrX 7977983 7978193 -154621737 - L1MB7 LINE L1 -755 5391 5183 3565 129 24 18 chrX 7978673 7979270 -154620660 - L1MC2 LINE L1 -38 6306 5707 815 279 131 48 chrX 7979383 7979493 -154620437 - L1MC4 LINE L1 -371 7671 7572 319 137 0 0 chrX 7979493 7979544 -154620386 - L1PA16 LINE L1 -9 6157 6107 815 279 131 48 chrX 7979544 7979955 -154619975 - L1MC4 LINE L1 -470 7572 7082 270 360 54 9 chrX 7980639 7980750 -154619180 + MER91C DNA MER1_type 1 116 -24 592 257 94 18 chrX 7981051 7981399 -154618531 - MLT1J2 LTR MaLR -23 427 24 330 256 169 79 chrX 7982964 7983319 -154616611 - MLT1J LTR MaLR 0 511 125 587 238 331 58 chrX 7986160 7986504 -154613426 - L2 LINE L2 -308 3005 2756 2362 88 0 7 chrX 7986504 7986800 -154613130 + AluSx SINE Alu 2 295 -17 587 238 331 58 chrX 7986800 7986868 -154613062 - L2 LINE L2 -557 2756 2708 2135 139 21 3 chrX 7986868 7987206 -154612724 + MER2 DNA MER2_type 1 344 0 587 238 331 58 chrX 7987206 7987427 -154612503 - L2 LINE L2 -605 2708 2199 2311 121 0 3 chrX 7987486 7987799 -154612131 - AluSx SINE Alu 0 312 1 352 306 25 50 chrX 7987870 7988069 -154611861 + MIR SINE MIR 48 241 -21 1926 141 13 20 chrX 7989547 7989846 -154610084 + AluJo SINE Alu 1 297 -15 232 316 10 41 chrX 7990100 7990198 -154609732 + MER5A DNA MER1_type 10 104 -85 723 146 184 13 chrX 7990484 7990642 -154609288 - MER20 DNA MER1_type -6 213 29 1015 173 8 130 chrX 7991172 7991426 -154608504 + MER58A DNA MER1_type 2 224 0 467 240 55 9 chrX 7991814 7991974 -154607956 - MER5B DNA MER1_type -10 179 1 812 246 11 0 chrX 7992110 7992297 -154607633 + MER5A DNA MER1_type 1 189 0 2220 159 109 17 chrX 7994486 7994952 -154604978 + MER34 LTR ERV1 1 509 -33 520 267 8 8 chrX 7995365 7995496 -154604434 + MIR SINE MIR 20 150 -112 1360 209 118 34 chrX 7995561 7995968 -154603962 + MLT1J1 LTR MaLR 1 441 -5 665 227 101 45 chrX 7996006 7996204 -154603726 - MER63A DNA MER1_type -1 209 1 833 218 122 48 chrX 7996666 7996937 -154602993 - LTR16C LTR ERVL 0 491 201 2187 175 66 84 chrX 7997311 7997694 -154602236 + MLT1D LTR MaLR 1 374 -131 18653 27 3 0 chrX 7997694 8000628 -154599302 - L1PA4 LINE L1 -3 6152 3206 2187 175 66 84 chrX 8000628 8000758 -154599172 + MLT1D LTR MaLR 374 505 0 509 310 41 29 chrX 8001257 8001502 -154598428 - MIR SINE MIR 0 262 15 749 136 27 0 chrX 8002032 8002142 -154597788 + MER20 DNA MER1_type 1 113 -106 1877 206 17 49 chrX 8002142 8002614 -154597316 - MLT1C LTR MaLR 0 467 11 289 183 24 49 chrX 8002600 8002682 -154597248 + MER20 DNA MER1_type 88 167 -52 * 599 207 9 0 chrX 8003129 8003240 -154596690 - MER58 DNA MER1_type 0 2420 2309 353 231 0 0 chrX 8003707 8003772 -154596158 - MER58 DNA MER1_type -321 65 1 243 174 0 0 chrX 8005373 8005427 -154594503 + L1M4c LINE L1 2458 2511 -3871 299 288 25 0 chrX 8005754 8005829 -154594101 - MLT1K LTR MaLR -72 516 440 319 311 67 20 chrX 8005829 8006108 -154593822 - LTR16C LTR ERVL 0 491 175 409 260 133 46 chrX 8006380 8006576 -154593354 - MLT1K LTR MaLR -160 428 216 425 303 161 19 chrX 8006778 8007039 -154592891 + LTR16A LTR ERVL 145 442 -8 1797 84 0 0 chrX 8008351 8008589 -154591341 - L1PA10 LINE L1 -12 6156 5919 3010 114 11 0 chrX 8008589 8009026 -154590904 + L1P LINE L1 3934 4375 -1771 474 65 0 0 chrX 8010465 8010527 -154589403 + (CA)n Simple_repeat Simple_repeat 2 63 0 582 285 75 69 chrX 8010652 8010985 -154588945 + MLT1I LTR MaLR 71 405 -4 324 0 0 0 chrX 8011470 8011506 -154588424 + (CA)n Simple_repeat Simple_repeat 1 36 0 1058 249 198 8 chrX 8011858 8012236 -154587694 + MLT1J2 LTR MaLR 1 450 0 1088 250 106 66 chrX 8012545 8012869 -154587061 + MLT1H1 LTR MaLR 17 347 -208 2313 110 0 3 chrX 8012869 8013169 -154586761 - AluSx SINE Alu -3 309 11 1088 250 106 66 chrX 8013169 8013387 -154586543 + MLT1H1 LTR MaLR 347 555 0 1557 133 0 0 chrX 8013589 8013807 -154586123 - AluSg/x SINE Alu -12 300 83 205 316 18 0 chrX 8014760 8014817 -154585113 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 2010 176 113 0 chrX 8015288 8015668 -154584262 - MSTB LTR MaLR -3 423 1 2274 93 0 17 chrX 8016100 8016402 -154583528 + AluSx SINE Alu 1 297 -15 1574 205 15 82 chrX 8016551 8016942 -154582988 + MLT1A1 LTR MaLR 1 365 0 201 289 31 72 chrX 8017936 8018033 -154581897 + L2 LINE L2 2619 2711 -603 2542 222 42 29 chrX 8018073 8018691 -154581239 + MLT1E2 LTR MaLR 1 626 0 293 265 77 61 chrX 8019350 8019531 -154580399 + HAL1 LINE L1 2319 2502 -5 935 139 0 26 chrX 8021613 8021764 -154578166 + MER6B DNA MER2_type 1 147 -63 349 302 94 6 chrX 8021887 8022046 -154577884 + MIR3 SINE MIR 29 201 -7 1852 177 0 16 chrX 8022138 8022455 -154577475 - AluJb SINE Alu 0 312 1 306 206 137 14 chrX 8022472 8022618 -154577312 + MER113 DNA MER1_type? 4 167 -354 544 235 87 37 chrX 8022764 8022951 -154576979 + L1M2 LINE L1 1608 1995 -4221 349 262 64 40 chrX 8023163 8023365 -154576565 - ERVL LTR ERVL -3315 2449 2243 2224 64 3 3 chrX 8023866 8024149 -154575781 + L1PB1 LINE L1 5862 6144 -7 1931 250 68 46 chrX 8025044 8025691 -154574239 + MER21B LTR ERV1 98 758 -105 1560 146 15 116 chrX 8025853 8026181 -154573749 + AluJb SINE Alu 1 295 -17 1954 154 113 10 chrX 8026696 8027086 -154572844 - MLT1D LTR MaLR 0 505 76 1211 213 47 52 chrX 8027087 8027124 -154572806 - MLT2B2 LTR ERVL 0 515 479 306 0 0 0 chrX 8027124 8027158 -154572772 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 345 47 0 0 chrX 8027157 8027200 -154572730 + (TG)n Simple_repeat Simple_repeat 1 43 0 1211 213 47 52 chrX 8027158 8027505 -154572425 - MLT2B2 LTR ERVL -36 479 175 378 192 13 46 chrX 8027509 8027660 -154572270 + CT-rich Low_complexity Low_complexity 3 148 0 284 306 37 19 chrX 8028865 8028973 -154570957 - MER5A DNA MER1_type -41 148 39 322 306 120 24 chrX 8029135 8029344 -154570586 - MIR SINE MIR -6 256 28 333 253 95 0 chrX 8030063 8030158 -154569772 + LTR33A LTR ERVL 269 372 -151 2437 121 44 22 chrX 8030176 8030588 -154569342 - MSTB LTR MaLR -5 421 1 506 211 99 37 chrX 8030588 8030746 -154569184 + LTR33A LTR ERVL 17 184 -339 240 213 160 11 chrX 8031216 8031310 -154568620 + L2 LINE L2 3206 3313 0 1481 184 178 63 chrX 8032255 8032417 -154567513 - L1MD2 LINE L1 -13 6346 6204 432 0 0 0 chrX 8032417 8032465 -154567465 + (TG)n Simple_repeat Simple_repeat 2 49 0 1481 184 178 63 chrX 8032465 8032780 -154567150 - L1MD2 LINE L1 -155 6204 5814 592 329 47 22 chrX 8033054 8033373 -154566557 - LTR16C LTR ERVL -16 475 149 304 54 0 0 chrX 8033707 8033744 -154566186 - tRNA-Val-GTG tRNA tRNA -39 37 1 31 0 0 0 chrX 8033838 8033869 -154566061 + AT_rich Low_complexity Low_complexity 1 31 0 265 262 107 8 chrX 8034071 8034193 -154565737 + L2 LINE L2 3166 3299 -14 1086 221 74 125 chrX 8034751 8035303 -154564627 - MLT1H1 LTR MaLR 0 555 32 201 121 0 0 chrX 8035494 8035527 -154564403 + (GA)n Simple_repeat Simple_repeat 2 34 0 523 212 126 81 chrX 8035820 8036018 -154563912 + MIR SINE MIR 53 259 -3 344 267 17 25 chrX 8038676 8038796 -154561134 - MIR SINE MIR -9 253 135 2254 156 54 12 chrX 8038810 8039275 -154560655 - L1MB7 LINE L1 -20 6164 5682 2093 143 10 56 chrX 8039294 8039686 -154560244 - MLT1A2 LTR MaLR 0 374 1 291 364 9 9 chrX 8039695 8039805 -154560125 + MIR SINE MIR 5 114 -148 193 245 20 0 chrX 8039938 8039987 -154559943 + L2 LINE L2 3264 3313 0 278 303 285 18 chrX 8040001 8040166 -154559764 + MIR SINE MIR 51 259 -3 1375 137 12 4 chrX 8041281 8041522 -154558408 + L1MB3 LINE L1 5939 6181 -2 245 315 0 0 chrX 8041528 8041617 -154558313 + HsTC2 DNA Tc2 779 867 -1031 335 294 67 73 chrX 8041883 8041961 -154557969 + HsTC2 DNA Tc2 1132 1209 -689 1028 118 10 98 chrX 8041961 8042036 -154557894 + MER5A DNA MER1_type 2 82 -107 2143 118 14 0 chrX 8042036 8042332 -154557598 - AluSx SINE Alu -12 300 1 1028 118 10 98 chrX 8042332 8042459 -154557471 + MER5A DNA MER1_type 82 186 -3 335 294 67 73 chrX 8042459 8042724 -154557206 + HsTC2 DNA Tc2 1209 1649 -249 2030 123 112 29 chrX 8043450 8043833 -154556097 + MSTA LTR MaLR 7 421 -7 253 200 215 0 chrX 8044030 8044095 -154555835 + L2 LINE L2 3235 3313 0 273 247 0 49 chrX 8044136 8044217 -154555713 + MLT1K LTR MaLR 183 259 -329 643 279 73 21 chrX 8045153 8045386 -154554544 + MIR SINE MIR 8 252 -10 212 0 36 0 chrX 8046366 8046394 -154553536 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 267 312 26 0 chrX 8046610 8046687 -154553243 + LTR67 LTR ERVL 116 194 -363 2308 113 0 3 chrX 8046991 8047292 -154552638 - AluSx SINE Alu -12 300 1 391 309 15 15 chrX 8047517 8047653 -154552277 + MIR SINE MIR 123 258 -4 260 286 60 91 chrX 8047670 8047869 -154552061 - L2 LINE L2 -50 3222 3030 3331 119 47 4 chrX 8048018 8048556 -154551374 - MER34B LTR ERV1 -2 563 3 33 66 0 0 chrX 8048700 8048761 -154551169 + AT_rich Low_complexity Low_complexity 1 61 0 2919 193 96 10 chrX 8049023 8049702 -154550228 + Tigger6a DNA MER2_type 217 953 -130 692 168 32 0 chrX 8049709 8049834 -154550096 - L1PB4 LINE L1 -6 6150 6022 * 5724 110 19 8 chrX 8049832 8050108 -154549822 + L1PA14 LINE L1 4315 4586 -1575 2334 78 0 0 chrX 8050108 8050429 -154549501 - AluY SINE Alu 0 321 1 5724 110 19 8 chrX 8050429 8051969 -154547961 + L1PA14 LINE L1 4586 6152 -9 3917 139 15 71 chrX 8051977 8052295 -154547635 - L1PB4 LINE L1 -122 6034 5700 12410 30 12 0 chrX 8052295 8054560 -154545370 - L1PA4 LINE L1 0 6155 3875 3917 139 15 71 chrX 8054560 8055036 -154544894 - L1PB4 LINE L1 -456 5700 5334 2161 104 3 3 chrX 8055036 8055333 -154544597 - AluSg SINE Alu -13 297 1 3917 139 15 71 chrX 8055333 8055817 -154544113 - L1PB4 LINE L1 -822 5334 4824 641 208 14 0 chrX 8055817 8055961 -154543969 + Tigger6a DNA MER2_type 938 1083 0 25 0 0 0 chrX 8057258 8057283 -154542647 + AT_rich Low_complexity Low_complexity 1 25 0 680 301 27 34 chrX 8058165 8058427 -154541503 - MIR SINE MIR 0 262 3 189 195 0 0 chrX 8058846 8058887 -154541043 + GA-rich Low_complexity Low_complexity 3 43 0 770 148 12 24 chrX 8059457 8059626 -154540304 + CT-rich Low_complexity Low_complexity 3 169 0 1898 154 54 153 chrX 8060054 8060611 -154539319 - MLT1D LTR MaLR 0 505 4 2094 129 0 10 chrX 8061123 8061426 -154538504 - AluSx SINE Alu -9 303 4 336 274 39 10 chrX 8061427 8061529 -154538401 - MIR SINE MIR -70 192 88 1827 169 4 0 chrX 8061727 8062006 -154537924 + AluJb SINE Alu 1 280 -32 215 56 56 0 chrX 8062094 8062130 -154537800 + T-rich Low_complexity Low_complexity 2 39 0 324 305 144 11 chrX 8063082 8063269 -154536661 + MIR SINE MIR 1 212 -50 266 245 233 31 chrX 8063412 8063571 -154536359 - MIR3 SINE MIR 0 208 18 241 326 34 0 chrX 8064495 8064584 -154535346 + MLT1K LTR MaLR 159 250 -338 2306 133 24 87 chrX 8064674 8065169 -154534761 + MER31B LTR ERV1 3 466 0 903 113 75 0 chrX 8065172 8065331 -154534599 + LTR42 LTR ERVL 1 171 -324 732 21 0 196 chrX 8065331 8065474 -154534456 - L1PA5 LINE L1 -191 5963 5849 889 26 70 0 chrX 8065474 8065586 -154534344 + L1PA5 LINE L1 6033 6154 0 1960 118 83 3 chrX 8065691 8066030 -154533900 + LTR42 LTR ERVL 130 495 0 314 277 113 19 chrX 8066048 8066207 -154533723 + MLT1K LTR MaLR 402 575 -13 29 28 0 0 chrX 8067113 8067149 -154532781 + AT_rich Low_complexity Low_complexity 1 36 0 794 167 0 0 chrX 8067149 8067269 -154532661 - FLAM_A SINE Alu -13 120 1 947 55 16 0 chrX 8067279 8067406 -154532524 - L1PA4 LINE L1 0 6155 6027 182 326 0 0 chrX 8067725 8067771 -154532159 + L2 LINE L2 3209 3254 -18 2435 123 17 38 chrX 8068311 8068733 -154531197 - L1MC1 LINE L1 -5 6328 5916 551 275 185 16 chrX 8068945 8069566 -154530364 + L1M4 LINE L1 3812 4537 -1609 2194 199 128 0 chrX 8069566 8070064 -154529866 - MLT1F1 LTR MaLR -4 563 2 603 288 109 8 chrX 8070067 8070542 -154529388 + L1M4 LINE L1 4536 5058 -1088 232 262 0 56 chrX 8070977 8071084 -154528846 + L1M4 LINE L1 5086 5186 -960 3941 263 82 31 chrX 8071195 8073313 -154526617 + L1ME3A LINE L1 77 2272 -3943 425 283 88 19 chrX 8073384 8073607 -154526323 + L1ME3A LINE L1 5264 5498 -733 850 288 21 13 chrX 8073652 8074027 -154525903 + L1ME3A LINE L1 5574 5951 -288 1081 194 58 82 chrX 8074059 8074486 -154525444 - LTR37B LTR ERV1 -7 461 45 878 140 11 182 chrX 8074638 8074902 -154525028 + MER20 DNA MER1_type 1 219 0 1917 169 14 0 chrX 8075078 8075374 -154524556 + AluJo SINE Alu 1 300 -12 378 289 94 13 chrX 8076832 8076991 -154522939 + MIR3 SINE MIR 31 202 -6 859 221 156 58 chrX 8077458 8077907 -154522023 - MLT1E LTR MaLR -100 493 1 251 311 76 17 chrX 8077959 8078078 -154521852 - L2 LINE L2 -4 3268 3143 1110 156 18 58 chrX 8078756 8078981 -154520949 - MER20 DNA MER1_type -3 216 1 202 274 0 41 chrX 8079538 8079611 -154520319 + CT-rich Low_complexity Low_complexity 4 73 0 205 378 55 24 chrX 8080545 8080672 -154519258 - L2 LINE L2 -15 3257 3127 2284 107 3 0 chrX 8082926 8083225 -154516705 + AluSx SINE Alu 2 301 -11 3329 106 10 4 chrX 8083244 8083755 -154516175 + L1MA4 LINE L1 5777 6290 -10 852 224 35 39 chrX 8084594 8084880 -154515050 - L1MA9 LINE L1 -38 6274 5990 7550 29 0 0 chrX 8085863 8087266 -154512664 - L1PA4 LINE L1 -8 6147 4744 193 238 0 48 chrX 8087449 8087491 -154512439 + MER5B DNA MER1_type 4 43 -135 793 268 98 0 chrX 8087497 8087773 -154512157 - MLT1I LTR MaLR -6 403 101 221 330 33 0 chrX 8087874 8087965 -154511965 + MER5B DNA MER1_type 84 177 -1 33 0 0 0 chrX 8088048 8088081 -154511849 + AT_rich Low_complexity Low_complexity 1 33 0 422 253 122 46 chrX 8088984 8089221 -154510709 + MLT1K LTR MaLR 326 580 -8 296 367 133 0 chrX 8090030 8090188 -154509742 - MIR3 SINE MIR -23 185 7 199 341 81 24 chrX 8090207 8090330 -154509600 + L2 LINE L2 2568 2697 -617 818 172 18 24 chrX 8090808 8090977 -154508953 + MER20 DNA MER1_type 52 219 0 279 239 14 0 chrX 8092717 8092788 -154507142 + L1ME4a LINE L1 5544 5615 -506 989 43 0 0 chrX 8092788 8092905 -154507025 + AluY SINE Alu 194 310 -1 307 256 88 60 chrX 8092909 8093226 -154506704 + L1ME4a LINE L1 5608 5933 -188 395 285 31 23 chrX 8093488 8093618 -154506312 - MIR SINE MIR -85 177 47 14819 117 37 13 chrX 8093683 8093738 -154506192 + Tigger1 DNA MER2_type 3 55 -2363 315 19 38 19 chrX 8093738 8093791 -154506139 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 14819 117 37 13 chrX 8093791 8096093 -154503837 + Tigger1 DNA MER2_type 55 2418 0 180 0 0 0 chrX 8096702 8096722 -154503208 + (A)n Simple_repeat Simple_repeat 1 20 0 2247 130 0 0 chrX 8096773 8097081 -154502849 - AluSx SINE Alu -4 308 1 1269 258 39 53 chrX 8097402 8097890 -154502040 - LTR16C LTR ERVL -10 481 1 367 281 74 15 chrX 8097995 8098198 -154501732 + L1ME3A LINE L1 5549 5763 -399 1256 308 40 4 chrX 8099509 8100013 -154499917 - L1MC4a LINE L1 -1882 5926 5405 244 246 0 0 chrX 8100414 8100471 -154499459 + (TAA)n Simple_repeat Simple_repeat 1 57 0 247 254 0 15 chrX 8100472 8100539 -154499391 + L1MEd LINE L1 456 521 -5598 288 227 73 92 chrX 8100640 8100913 -154499017 + L1MEd LINE L1 685 952 -5167 336 314 33 71 chrX 8100974 8101184 -154498746 + L1ME3A LINE L1 5967 6168 -2 612 249 74 11 chrX 8101200 8101469 -154498461 + L1MEd LINE L1 965 1250 -4869 227 264 0 0 chrX 8101574 8101646 -154498284 + L1MEd LINE L1 1433 1504 -4625 463 276 101 60 chrX 8102151 8102368 -154497562 + L1MEd LINE L1 2216 2441 -3688 621 229 21 47 chrX 8102855 8103091 -154496839 + L1MC5 LINE L1 7184 7413 -548 3739 244 46 37 chrX 8103291 8104776 -154495154 - L2 LINE L2 -2 3311 1816 443 253 51 56 chrX 8104852 8104916 -154495014 + MLT1L LTR MaLR 90 153 -462 1195 139 8 92 chrX 8104916 8105154 -154494776 + MER20 DNA MER1_type 2 219 0 443 253 51 56 chrX 8105154 8105267 -154494663 + MLT1L LTR MaLR 153 266 -349 852 188 67 58 chrX 8105949 8105999 -154493931 + MER63A DNA MER1_type 1 49 -1639 2082 141 3 0 chrX 8105999 8106290 -154493640 + AluSx SINE Alu 1 292 -20 852 188 67 58 chrX 8106290 8106447 -154493483 + MER63A DNA MER1_type 49 210 0 2847 142 21 19 chrX 8106900 8107385 -154492545 - MER66B LTR ERV1 0 486 1 369 0 0 0 chrX 8107451 8107492 -154492438 + (TG)n Simple_repeat Simple_repeat 1 41 0 394 284 0 18 chrX 8107872 8107981 -154491949 + MER81 DNA DNA 8 114 0 433 238 56 134 chrX 8107998 8108498 -154491432 + LTR67 LTR ERVL 95 555 -2 589 122 30 69 chrX 8108936 8108992 -154490938 - L1MD3 LINE L1 0 7995 7938 2197 129 0 7 chrX 8108992 8109301 -154490629 + AluSx SINE Alu 1 307 -5 589 122 30 69 chrX 8109301 8109375 -154490555 - L1MD3 LINE L1 -57 7938 7870 483 200 23 0 chrX 8109875 8109981 -154489949 - MER5A DNA MER1_type -77 112 4 548 227 117 0 chrX 8110152 8110280 -154489650 - MLT1E LTR MaLR -450 143 1 2520 207 65 26 chrX 8111453 8112024 -154487906 - MLT1E LTR MaLR 0 593 1 21 57 0 0 chrX 8112426 8112461 -154487469 + AT_rich Low_complexity Low_complexity 1 35 0 349 274 71 9 chrX 8112758 8112871 -154487059 - MIR SINE MIR -96 166 47 2777 94 8 3 chrX 8113033 8113406 -154486524 + THE1C LTR MaLR 1 375 0 298 319 92 32 chrX 8114313 8114564 -154485366 + MLT1I LTR MaLR 19 284 -125 771 189 31 42 chrX 8114741 8114932 -154484998 - MER5A DNA MER1_type 0 189 1 528 228 13 0 chrX 8115900 8116019 -154483911 + MER5B DNA MER1_type 46 161 -17 359 233 0 150 chrX 8116051 8116113 -154483817 + MER5A DNA MER1_type 14 47 -142 2421 74 3 7 chrX 8116113 8116422 -154483508 + AluSp SINE Alu 1 308 -5 359 233 0 150 chrX 8116422 8116492 -154483438 + MER5A DNA MER1_type 47 126 -63 2167 116 0 0 chrX 8116766 8117109 -154482821 - AluSx SINE Alu 0 312 1 991 156 11 11 chrX 8117249 8117428 -154482502 - MER58A DNA MER1_type 0 224 46 2816 140 81 0 chrX 8117428 8117553 -154482377 + L1MB5 LINE L1 5624 5737 -437 258 105 0 0 chrX 8117553 8117591 -154482339 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 2816 140 81 0 chrX 8117591 8117958 -154481972 + L1MB5 LINE L1 5737 6156 -18 180 0 0 0 chrX 8118744 8118764 -154481166 + (T)n Simple_repeat Simple_repeat 1 20 0 657 261 103 54 chrX 8119350 8119558 -154480372 + MLT1H LTR MaLR 260 485 -64 1201 209 8 4 chrX 8119558 8119793 -154480137 - MER8 DNA MER2_type -2 237 2 657 261 103 54 chrX 8119793 8119845 -154480085 + MLT1H LTR MaLR 485 533 -16 658 269 36 0 chrX 8119897 8120090 -154479840 - MLT1J2 LTR MaLR -245 205 6 23 33 0 0 chrX 8123196 8123226 -154476704 + AT_rich Low_complexity Low_complexity 1 30 0 230 235 296 0 chrX 8123621 8123719 -154476211 - L2 LINE L2 -10 3262 3136 * 291 380 20 0 chrX 8123711 8123811 -154476119 - MIR SINE MIR -77 131 30 23 54 0 0 chrX 8124183 8124220 -154475710 + AT_rich Low_complexity Low_complexity 1 37 0 508 192 253 61 chrX 8124267 8124496 -154475434 - MLT1H LTR MaLR -16 533 261 399 258 115 52 chrX 8124655 8124942 -154474988 - MLT1J LTR MaLR -4 507 203 401 379 67 29 chrX 8125346 8125660 -154474270 + L1MEd LINE L1 533 858 -5261 302 257 134 31 chrX 8125718 8126079 -154473851 + L1MEd LINE L1 926 1184 -4843 417 241 36 72 chrX 8126084 8126250 -154473680 - MLT1J LTR MaLR -325 186 27 440 276 10 0 chrX 8126257 8126355 -154473575 - MIR SINE MIR -160 102 4 822 253 0 36 chrX 8126887 8127108 -154472822 + MER58A DNA MER1_type 12 224 0 22 35 0 0 chrX 8127674 8127703 -154472227 + AT_rich Low_complexity Low_complexity 1 29 0 426 274 113 62 chrX 8129880 8130270 -154469660 + MLT1J2 LTR MaLR 23 432 -18 181 268 18 71 chrX 8130457 8130513 -154469417 + L2 LINE L2 3201 3253 -19 369 0 0 0 chrX 8130645 8130686 -154469244 + (TG)n Simple_repeat Simple_repeat 1 41 0 344 258 124 0 chrX 8130821 8130918 -154469012 - L2 LINE L2 -4 3309 3201 377 258 189 0 chrX 8131077 8131209 -154468721 + MER20 DNA MER1_type 7 163 -56 2622 161 11 30 chrX 8131430 8131896 -154468034 - MSTB2 LTR MaLR 0 457 1 397 153 59 0 chrX 8132041 8132126 -154467804 - MER53 DNA DNA -1 188 99 7463 31 0 2 chrX 8132860 8133996 -154465934 - L1PA4 LINE L1 -9 6146 5011 733 59 20 0 chrX 8133996 8134098 -154465832 + L1PA4 LINE L1 4906 5009 -1137 3471 188 72 38 chrX 8136156 8136980 -154462950 + MER21B LTR ERV1 1 852 -11 563 269 202 29 chrX 8137134 8137510 -154462420 + MLT1H1 LTR MaLR 115 555 0 224 260 60 145 chrX 8137595 8137685 -154462245 + MIR SINE MIR 27 123 -139 21 36 0 0 chrX 8137685 8137713 -154462217 + GC_rich Low_complexity Low_complexity 1 28 0 1305 54 0 18 chrX 8137695 8137861 -154462069 + L1PA4 LINE L1 5993 6155 0 224 260 60 145 chrX 8137713 8137960 -154461970 + MIR SINE MIR 123 209 -53 368 280 8 25 chrX 8139422 8139540 -154460390 + L2 LINE L2 3154 3269 -3 1173 233 5 5 chrX 8140181 8140400 -154459530 - MER58A DNA MER1_type -1 223 5 342 163 0 0 chrX 8140415 8140483 -154459447 + MER5A DNA MER1_type 4 71 -118 1972 147 33 0 chrX 8140491 8140791 -154459139 + AluSx SINE Alu 3 312 0 345 172 0 0 chrX 8140801 8140865 -154459065 + A-rich Low_complexity Low_complexity 5 68 0 187 196 54 36 chrX 8140891 8140947 -154458983 + MER5A DNA MER1_type 125 181 -8 305 210 120 20 chrX 8142153 8142253 -154457677 - MIR SINE MIR -133 129 20 228 325 77 26 chrX 8143470 8143587 -154456343 + L2 LINE L2 3169 3291 -22 939 289 99 46 chrX 8143611 8144196 -154455734 - HAL1 LINE L1 -3 2504 1889 4470 254 60 46 chrX 8144271 8144595 -154455335 - HAL1 LINE L1 -733 1774 1456 2361 86 0 10 chrX 8144595 8144896 -154455034 - AluSc SINE Alu -11 298 1 4470 254 60 46 chrX 8144896 8145810 -154454120 - HAL1 LINE L1 -1051 1456 501 1058 205 38 0 chrX 8145810 8146020 -154453910 - MER20 DNA MER1_type -1 218 1 4470 254 60 46 chrX 8146020 8146528 -154453402 - HAL1 LINE L1 -2006 501 2 623 267 120 4 chrX 8147783 8148008 -154451922 + MLT1I LTR MaLR 157 407 -2 6420 176 31 31 chrX 8148966 8149822 -154450108 - L1MB3 LINE L1 -1 6182 5327 2929 118 29 2 chrX 8149822 8150239 -154449691 - MSTA LTR MaLR 0 428 1 6420 176 31 31 chrX 8150239 8151128 -154448802 - L1MB3 LINE L1 -856 5327 4427 2539 51 3 16 chrX 8151128 8151443 -154448487 - AluY SINE Alu 0 311 1 6420 176 31 31 chrX 8151443 8152032 -154447898 - L1MB3 LINE L1 -1756 4427 3839 209 333 0 0 chrX 8152267 8152324 -154447606 - MIR3 SINE MIR -1 207 151 1872 151 0 31 chrX 8152709 8153026 -154446904 + AluJo SINE Alu 1 307 -5 6148 55 0 11 chrX 8153218 8153976 -154445954 + L1PA5 LINE L1 5361 6110 -44 213 39 0 0 chrX 8153976 8154002 -154445928 + (A)n Simple_repeat Simple_repeat 1 26 0 1918 159 30 0 chrX 8154128 8154429 -154445501 - AluJb SINE Alu -2 310 1 26 0 0 0 chrX 8154429 8154455 -154445475 + AT_rich Low_complexity Low_complexity 1 26 0 302 265 49 20 chrX 8157215 8157317 -154442613 + MIR SINE MIR 21 125 -137 202 216 0 0 chrX 8157606 8157643 -154442287 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 781 211 21 0 chrX 8157858 8157997 -154441933 - MER90 LTR ERV1 0 614 473 2937 163 39 0 chrX 8157997 8158487 -154441443 + MER68 LTR ERV1 1 509 -53 2029 190 47 30 chrX 8158501 8158928 -154441002 - MER90 LTR ERV1 -141 434 1 2467 83 3 3 chrX 8159136 8159449 -154440481 - AluSp SINE Alu 0 313 1 1574 186 19 6 chrX 8160406 8160724 -154439206 + MER33 DNA MER1_type 2 323 -1 984 244 37 9 chrX 8160733 8160950 -154438980 + MER58A DNA MER1_type 1 223 -1 2193 122 0 0 chrX 8160975 8161270 -154438660 - AluSx SINE Alu -17 295 1 21 57 0 0 chrX 8161318 8161353 -154438577 + AT_rich Low_complexity Low_complexity 1 35 0 7766 22 11 0 chrX 8165489 8166381 -154433549 - L1PA4 LINE L1 0 6155 5254 633 278 150 50 chrX 8166678 8166990 -154432940 - MLT1K LTR MaLR -169 419 61 2304 235 72 30 chrX 8166990 8167557 -154432373 + MLT1E LTR MaLR 3 593 0 633 278 150 50 chrX 8167557 8167625 -154432305 - MLT1K LTR MaLR -527 61 1 473 260 7 47 chrX 8167627 8167777 -154432153 - MIR SINE MIR -51 211 68 209 360 22 0 chrX 8168410 8168499 -154431431 + L3 LINE CR1 1482 1572 -5 29 0 0 0 chrX 8168610 8168639 -154431291 + AT_rich Low_complexity Low_complexity 1 29 0 1322 204 14 0 chrX 8169059 8169280 -154430650 + MER58A DNA MER1_type 1 224 0 182 390 21 0 chrX 8169495 8169590 -154430340 - MIR SINE MIR -87 121 25 763 301 64 61 chrX 8169886 8170261 -154429669 + MER115 DNA AcHobo 59 434 -259 1477 198 215 73 chrX 8170500 8171021 -154428909 - MLT1G1 LTR MaLR 0 595 1 297 75 0 0 chrX 8172539 8172579 -154427351 + (TAA)n Simple_repeat Simple_repeat 3 42 0 21 71 0 0 chrX 8172687 8172729 -154427201 + AT_rich Low_complexity Low_complexity 1 42 0 767 229 0 24 chrX 8173079 8173245 -154426685 + MLT1E LTR MaLR 3 164 -429 1868 170 36 36 chrX 8173298 8173663 -154426267 - MLT1A1 LTR MaLR 0 365 1 979 262 59 57 chrX 8173717 8174189 -154425741 - MLT1J1 LTR MaLR -4 442 1 538 313 95 3 chrX 8174233 8174537 -154425393 - ERVL LTR ERVL -1729 4035 3704 404 284 135 59 chrX 8174680 8175042 -154424888 + L2 LINE L2 2218 3313 0 1751 205 15 3 chrX 8175322 8175653 -154424277 - MER58B DNA MER1_type -5 336 2 206 164 194 30 chrX 8176415 8176482 -154423448 - MIR SINE MIR -12 250 173 1284 149 13 53 chrX 8176640 8176868 -154423062 - MER20 DNA MER1_type 0 219 1 342 228 44 9 chrX 8177207 8177321 -154422609 + L1ME4a LINE L1 6001 6118 -3 278 169 15 0 chrX 8179632 8179697 -154420233 + CT-rich Low_complexity Low_complexity 3 68 0 294 350 41 41 chrX 8179698 8179821 -154420109 - L2 LINE L2 -9 3263 3141 260 141 58 16 chrX 8180368 8180489 -154419441 + (TTTAA)n Simple_repeat Simple_repeat 2 127 0 1057 166 37 32 chrX 8180915 8181132 -154418798 + MER20 DNA MER1_type 2 219 0 2932 199 34 27 chrX 8183027 8183614 -154416316 - MLT1E LTR MaLR -2 591 1 2030 78 0 12 chrX 8183747 8184004 -154415926 - AluY SINE Alu -23 288 35 687 189 237 0 chrX 8184166 8184335 -154415595 + MER58C DNA MER1_type 1 209 -6 2262 95 7 3 chrX 8184391 8184686 -154415244 - AluSq SINE Alu -17 296 1 264 307 67 57 chrX 8184699 8184999 -154414931 - L1ME LINE L1 -527 5594 5295 327 332 43 32 chrX 8185261 8185448 -154414482 - L1ME LINE L1 -1338 4808 4620 250 304 92 54 chrX 8185645 8186309 -154413621 - L1ME LINE L1 -2171 3975 3287 538 251 31 18 chrX 8186360 8186377 -154413553 - L1MA10 LINE L1 -1 6333 6317 1515 202 106 0 chrX 8186377 8186699 -154413231 - L1ME1 LINE L1 -6 6160 5805 2101 132 0 0 chrX 8186747 8187043 -154412887 - AluSx SINE Alu -16 296 1 2342 224 94 31 chrX 8187043 8187089 -154412841 - L1M4 LINE L1 -2690 3456 3414 2304 78 0 45 chrX 8187089 8187398 -154412532 - AluSg SINE Alu -15 295 1 2342 224 94 31 chrX 8187398 8188223 -154411707 - L1M4 LINE L1 -2732 3414 2642 1953 157 3 0 chrX 8188223 8188241 -154411689 - AluSx SINE Alu -7 305 289 234 0 0 0 chrX 8188241 8188267 -154411663 + (TCC)n Simple_repeat Simple_repeat 3 28 0 1953 157 3 0 chrX 8188267 8188548 -154411382 - AluSx SINE Alu -23 289 5 2342 224 94 31 chrX 8188548 8188597 -154411333 - L1M4 LINE L1 -3504 2642 2598 1706 201 48 38 chrX 8188597 8188989 -154410941 - MSTD LTR MaLR 0 396 1 2342 224 94 31 chrX 8188989 8189254 -154410676 - L1M4 LINE L1 -3548 2598 2204 25 31 0 0 chrX 8189894 8189926 -154410004 + AT_rich Low_complexity Low_complexity 1 32 0 197 279 188 55 chrX 8190041 8190206 -154409724 - L2 LINE L2 -5 3308 3122 663 299 91 83 chrX 8190372 8191109 -154408821 - L2 LINE L2 -426 2888 2146 255 360 58 58 chrX 8191116 8191377 -154408553 - L2 LINE L2 -1343 1971 1711 1019 211 9 47 chrX 8192351 8192583 -154407347 + MER58A DNA MER1_type 2 224 0 312 91 0 0 chrX 8192627 8192671 -154407259 + (A)n Simple_repeat Simple_repeat 1 44 0 542 211 111 6 chrX 8192900 8193071 -154406859 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chrX 8193763 8193784 -154406146 + AT_rich Low_complexity Low_complexity 1 21 0 917 204 28 9 chrX 8193921 8194132 -154405798 - MER20 DNA MER1_type -4 215 1 780 185 99 6 chrX 8194615 8194777 -154405153 - MER45A DNA AcHobo -1 177 1 997 181 34 15 chrX 8198012 8198216 -154401714 + MER3 DNA MER1_type 1 208 -1 295 271 172 0 chrX 8198358 8198480 -154401450 + MIR SINE MIR 117 259 -3 188 315 0 37 chrX 8198489 8198543 -154401387 - MIR SINE MIR -164 98 47 241 150 0 0 chrX 8199184 8199224 -154400706 + MLT2E LTR ERVL 45 84 -544 2116 100 61 50 chrX 8199522 8199882 -154400048 + THE1B LTR MaLR 1 364 0 697 252 78 18 chrX 8201498 8201521 -154398409 + MIR SINE MIR 2 22 -240 1134 219 0 0 chrX 8201521 8201745 -154398185 + MER58A DNA MER1_type 1 224 0 697 252 78 18 chrX 8201745 8201939 -154397991 + MIR SINE MIR 22 232 -30 185 333 18 0 chrX 8201912 8201969 -154397961 + L2 LINE L2 3251 3308 -5 * 1155 199 4 18 chrX 8202317 8202543 -154397387 - MER58A DNA MER1_type -1 223 1 251 136 12 136 chrX 8202641 8202722 -154397208 + MLT1H LTR MaLR 479 549 0 986 217 17 43 chrX 8204249 8204479 -154395451 - MER58A DNA MER1_type 0 224 1 2087 145 3 0 chrX 8204519 8204830 -154395100 + AluSx SINE Alu 1 312 0 416 307 99 40 chrX 8205464 8205874 -154394056 + L2 LINE L2 2573 2994 -278 208 333 14 0 chrX 8206058 8206127 -154393803 + L2 LINE L2 3244 3313 0 1378 156 15 0 chrX 8206328 8206591 -154393339 + L1MD3 LINE L1 7729 7995 0 639 185 31 87 chrX 8206991 8207186 -154392744 - MER20 DNA MER1_type -33 186 3 520 231 93 56 chrX 8207952 8208168 -154391762 + MLT1H LTR MaLR 26 249 -300 243 88 0 0 chrX 8209047 8209081 -154390849 + (TA)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chrX 8209102 8209131 -154390799 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrX 8211143 8211166 -154388764 + AT_rich Low_complexity Low_complexity 1 23 0 449 273 134 21 chrX 8211610 8211804 -154388126 - MIR SINE MIR 0 262 47 248 316 86 29 chrX 8212553 8212727 -154387203 + MLT1H LTR MaLR 220 403 -146 2072 129 9 31 chrX 8212866 8213151 -154386779 + AluSx SINE Alu 1 291 -21 252 0 0 0 chrX 8213151 8213179 -154386751 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 438 20 0 0 chrX 8213178 8213229 -154386701 + (CA)n Simple_repeat Simple_repeat 2 52 0 2072 129 9 31 chrX 8213179 8213261 -154386669 + AluSx SINE Alu 291 311 -1 1944 178 140 88 chrX 8213298 8213899 -154386031 + MLT1E1 LTR MaLR 17 648 -6 1163 194 9 0 chrX 8214433 8214649 -154385281 - MER20 DNA MER1_type -1 218 1 842 271 25 60 chrX 8214810 8215213 -154384717 + L1MC4a LINE L1 5524 5912 -1896 262 340 120 5 chrX 8215517 8215708 -154384222 + L2 LINE L2 2608 2820 -494 1210 148 5 49 chrX 8217035 8217258 -154382672 - AluJb SINE Alu -11 301 89 1068 227 28 0 chrX 8218147 8218363 -154381567 - MER58A DNA MER1_type -2 222 1 1217 169 47 0 chrX 8218849 8219062 -154380868 + MER58A DNA MER1_type 2 224 0 515 278 93 49 chrX 8220549 8220937 -154378993 + MLT1L LTR MaLR 200 604 -11 907 174 82 31 chrX 8221013 8221209 -154378721 - MER3 DNA MER1_type 0 209 4 182 31 0 62 chrX 8221854 8221886 -154378044 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chrX 8221904 8221924 -154378006 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 262 333 145 0 chrX 8222065 8222182 -154377748 + MIR SINE MIR 55 188 -74 211 295 129 65 chrX 8223689 8223828 -154376102 - MIR3 SINE MIR -16 192 45 2173 151 15 15 chrX 8223960 8224310 -154375620 + L1MB5 LINE L1 5777 6129 -45 762 142 0 55 chrX 8224310 8224437 -154375493 - FLAM_C SINE Alu -13 120 1 2173 151 15 15 chrX 8224437 8224484 -154375446 + L1MB5 LINE L1 6128 6174 0 333 311 33 0 chrX 8226301 8226423 -154373507 - MIR SINE MIR -6 256 131 207 100 0 0 chrX 8226429 8226459 -154373471 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 26 0 0 0 chrX 8227133 8227159 -154372771 + AT_rich Low_complexity Low_complexity 1 26 0 4994 81 21 11 chrX 8227172 8227888 -154372042 - L1MA1 LINE L1 -7 6295 5573 318 297 0 0 chrX 8227916 8227990 -154371940 - MIR SINE MIR -111 97 24 198 196 22 22 chrX 8228893 8228939 -154370991 + MIR SINE MIR 211 256 -6 893 210 15 25 chrX 8229008 8229208 -154370722 + MER58A DNA MER1_type 27 224 0 2386 85 0 19 chrX 8229392 8229709 -154370221 - AluSx SINE Alu -1 311 1 423 247 82 29 chrX 8232777 8232947 -154366983 - MER112 DNA MER1_type -65 195 17 961 188 34 19 chrX 8232992 8233199 -154366731 + MER58A DNA MER1_type 15 224 0 2040 130 0 33 chrX 8234822 8235121 -154364809 - AluJb SINE Alu -21 291 3 309 306 36 0 chrX 8235330 8235441 -154364489 - L1ME1 LINE L1 -303 5863 5749 3755 209 32 43 chrX 8235441 8235946 -154363984 - L1ME1 LINE L1 -8 6394 5885 2009 139 3 7 chrX 8235946 8236247 -154363683 - AluJb SINE Alu -12 300 1 3755 209 32 43 chrX 8236247 8236556 -154363374 - L1ME1 LINE L1 -517 5885 5574 3223 69 30 7 chrX 8236556 8236990 -154362940 + MLT2A1 LTR ERVL 1 444 0 3755 209 32 43 chrX 8236990 8237660 -154362270 - L1ME1 LINE L1 -828 5574 4936 2483 64 0 0 chrX 8237660 8237958 -154361972 - AluY SINE Alu -13 298 1 3755 209 32 43 chrX 8237958 8238354 -154361576 - L1ME1 LINE L1 -1466 4936 4537 570 286 127 71 chrX 8238438 8238928 -154361002 - L1ME1 LINE L1 -2249 4133 3617 706 244 28 28 chrX 8239053 8239229 -154360701 - MER58C DNA MER1_type -1 214 39 809 141 0 0 chrX 8239396 8239512 -154360418 - FLAM_C SINE Alu -29 114 1 316 260 50 72 chrX 8239984 8240165 -154359765 - L1ME1 LINE L1 -5298 1086 910 2354 188 71 29 chrX 8241007 8241486 -154358444 + MLT1D LTR MaLR 5 503 -2 29 0 0 0 chrX 8241535 8241564 -154358366 + AT_rich Low_complexity Low_complexity 1 29 0 1042 171 59 18 chrX 8241568 8241790 -154358140 + L1MA7 LINE L1 6061 6291 0 2012 146 6 19 chrX 8242449 8242765 -154357165 + AluJb SINE Alu 1 312 0 491 318 42 5 chrX 8243789 8243978 -154355952 - MER117 DNA MER1_type 0 197 2 2258 145 75 6 chrX 8245246 8245697 -154354233 + MER31A LTR ERV1 1 661 0 554 213 0 39 chrX 8245774 8245901 -154354029 + L2 LINE L2 3192 3313 0 1730 147 0 52 chrX 8246071 8246377 -154353553 - AluJb SINE Alu -22 290 1 4468 186 34 17 chrX 8246387 8247714 -154352216 - L1MB7 LINE L1 0 6184 4831 207 309 14 72 chrX 8247849 8247988 -154351942 + MIR SINE MIR 85 215 -47 1908 81 0 0 chrX 8248992 8249227 -154350703 + AluSc SINE Alu 1 235 -74 236 260 52 26 chrX 8250434 8250511 -154349419 + MER91C DNA MER1_type 26 104 -36 382 305 19 32 chrX 8252066 8252220 -154347710 + MIR SINE MIR 13 164 -98 447 198 9 28 chrX 8252223 8252329 -154347601 + MER20 DNA MER1_type 116 219 0 305 259 12 0 chrX 8252334 8252415 -154347515 + MIR SINE MIR 170 251 -11 1236 178 41 18 chrX 8252712 8252931 -154346999 - MER58A DNA MER1_type 0 224 1 230 118 0 0 chrX 8253049 8253083 -154346847 + L2 LINE L2 3268 3301 -12 704 256 154 28 chrX 8254266 8254590 -154345340 - LTR16C LTR ERVL -15 476 112 204 286 0 18 chrX 8255095 8255151 -154344779 + CT-rich Low_complexity Low_complexity 3 57 0 227 250 0 0 chrX 8256042 8256090 -154343840 - L2 LINE L2 -19 3294 3247 779 158 20 43 chrX 8256194 8256479 -154343451 + MER33 DNA MER1_type 1 355 -8 1349 176 52 94 chrX 8257724 8258105 -154341825 - MSTB LTR MaLR -43 383 19 201 363 0 55 chrX 8258152 8258334 -154341596 - L2 LINE L2 -184 3088 2917 1536 218 78 51 chrX 8258554 8258638 -154341292 + MLT1C LTR MaLR 6 86 -381 1916 138 20 10 chrX 8258638 8258934 -154340996 - AluJb SINE Alu -13 299 1 1536 218 78 51 chrX 8258934 8259299 -154340631 + MLT1C LTR MaLR 86 467 0 2426 62 0 0 chrX 8259304 8259593 -154340337 - AluY SINE Alu -22 289 1 1908 178 12 3 chrX 8260522 8260854 -154339076 - MER2 DNA MER2_type -9 336 2 180 0 0 0 chrX 8261186 8261206 -154338724 + (A)n Simple_repeat Simple_repeat 1 20 0 2282 106 0 0 chrX 8261990 8262292 -154337638 - AluSx SINE Alu -10 302 1 582 54 0 0 chrX 8262680 8262754 -154337176 + (TC)n Simple_repeat Simple_repeat 1 74 0 1659 90 40 5 chrX 8264766 8264988 -154334942 + MER30 DNA MER1_type 1 230 0 204 229 0 21 chrX 8264996 8265044 -154334886 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 257 270 0 0 chrX 8265047 8265110 -154334820 - L2 LINE L2 -5 3308 3246 189 0 0 0 chrX 8266757 8266778 -154333152 + (CAA)n Simple_repeat Simple_repeat 1 21 0 332 262 85 38 chrX 8267745 8267901 -154332029 + MIR SINE MIR 21 192 -69 649 271 144 30 chrX 8268056 8268417 -154331513 + LTR16C LTR ERVL 80 481 -10 257 219 49 12 chrX 8270161 8270243 -154329687 - MER117 DNA MER1_type -76 121 37 885 120 0 8 chrX 8270253 8270378 -154329552 + FLAM_C SINE Alu 1 124 -19 28 0 0 0 chrX 8270379 8270407 -154329523 + AT_rich Low_complexity Low_complexity 1 28 0 884 190 0 12 chrX 8270446 8270609 -154329321 + FRAM SINE Alu 12 172 -4 731 225 12 47 chrX 8270734 8270816 -154329114 + MER58 DNA MER1_type 1 84 -2336 2363 77 0 13 chrX 8270816 8271116 -154328814 - AluSp SINE Alu -17 296 1 731 225 12 47 chrX 8271116 8271277 -154328653 + MER58 DNA MER1_type 84 275 -2145 261 180 0 20 chrX 8271259 8271309 -154328621 + MER58 DNA MER1_type 2356 2404 -16 * 697 0 22 11 chrX 8271353 8271442 -154328488 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 480 245 113 0 chrX 8272234 8272393 -154327537 - MER5B DNA MER1_type -1 177 1 1962 131 10 16 chrX 8273055 8273367 -154326563 + AluJo SINE Alu 1 310 -2 315 259 47 12 chrX 8273782 8273867 -154326063 + MER5A DNA MER1_type 1 88 -101 207 0 0 0 chrX 8275077 8275100 -154324830 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1990 133 0 3 chrX 8275103 8275388 -154324542 - AluJb SINE Alu -28 284 1 785 192 110 11 chrX 8276552 8276734 -154323196 - L1ME2 LINE L1 -2 6162 5963 2301 100 0 3 chrX 8276904 8277214 -154322716 + AluSg SINE Alu 1 309 -1 2057 130 0 3 chrX 8277318 8277618 -154322312 + AluSx SINE Alu 1 299 -13 1487 189 0 34 chrX 8277746 8278043 -154321887 - AluJo SINE Alu -25 287 1 1970 125 125 3 chrX 8278070 8278390 -154321540 - MER46B DNA MER2_type 0 236 3 538 273 107 19 chrX 8280581 8280786 -154319144 - MIR SINE MIR -4 258 36 1531 140 8 51 chrX 8280802 8281141 -154318789 + L1MA5 LINE L1 5655 5970 -321 2456 161 12 5 chrX 8281153 8281557 -154318373 + L1MA6 LINE L1 5894 6300 0 931 192 147 49 chrX 8282125 8282391 -154317539 - MER33 DNA MER1_type -23 301 10 1038 233 18 22 chrX 8282398 8282621 -154317309 - MER58A DNA MER1_type 0 224 3 484 150 183 5 chrX 8282882 8283004 -154316926 + MIR SINE MIR 4 144 -64 191 323 55 16 chrX 8283551 8283678 -154316252 + L2 LINE L2 2835 2966 -306 1902 56 56 0 chrX 8284647 8284917 -154315013 - Harlequin LTR ERV1 -4628 2268 1984 * 6967 66 94 21 chrX 8284907 8285895 -154314035 - Harlequin LTR ERV1 -5555 1341 282 300 135 0 39 chrX 8285896 8285948 -154313982 - Harlequin LTR ERV1 -7509 304 255 * 744 134 0 52 chrX 8285936 8286070 -154313860 - Harlequin LTR ERV1 -7432 381 255 * 2862 80 10 8 chrX 8286041 8286439 -154313491 - Harlequin LTR ERV1 -6497 399 1 1790 194 32 24 chrX 8286439 8286815 -154313115 - LTR2B LTR ERV1 0 490 112 275 248 0 47 chrX 8287303 8287432 -154312498 + MSTB2 LTR MaLR 333 455 -2 2337 107 0 3 chrX 8288098 8288408 -154311522 - AluSx SINE Alu -3 309 1 315 0 0 0 chrX 8288455 8288490 -154311440 + (TG)n Simple_repeat Simple_repeat 2 36 0 492 62 0 0 chrX 8288509 8288573 -154311357 + (GA)n Simple_repeat Simple_repeat 2 65 0 232 338 0 12 chrX 8288622 8288702 -154311228 + L2 LINE L2 2981 3059 -213 1097 126 13 0 chrX 8288779 8288938 -154310992 - AluSg/x SINE Alu -18 294 134 2144 125 0 10 chrX 8288938 8289234 -154310696 - AluSx SINE Alu -19 293 1 228 303 148 8 chrX 8289243 8289365 -154310565 + MIR SINE MIR 124 262 0 182 250 0 24 chrX 8289367 8289451 -154310479 + (CTA)n Simple_repeat Simple_repeat 2 83 0 408 191 0 0 chrX 8290189 8290278 -154309652 + G-rich Low_complexity Low_complexity 1 89 0 439 286 0 41 chrX 8290299 8290446 -154309484 + G-rich Low_complexity Low_complexity 6 146 0 203 324 14 7 chrX 8290587 8290729 -154309201 + (TA)n Simple_repeat Simple_repeat 2 144 0 249 33 0 0 chrX 8291805 8291835 -154308095 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chrX 8292620 8292642 -154307288 + (A)n Simple_repeat Simple_repeat 1 22 0 414 0 0 0 chrX 8292978 8293024 -154306906 + (TG)n Simple_repeat Simple_repeat 2 47 0 323 294 11 11 chrX 8293139 8293231 -154306699 - L3 LINE CR1 -12 1565 1474 183 80 0 0 chrX 8294141 8294166 -154305764 + (TA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chrX 8294486 8294515 -154305415 + (T)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chrX 8294619 8294643 -154305287 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chrX 8295618 8295639 -154304291 + AT_rich Low_complexity Low_complexity 1 21 0 267 374 20 0 chrX 8297001 8297100 -154302830 - L2 LINE L2 -3 3269 3169 1942 142 42 0 chrX 8297657 8297946 -154301984 - AluSx SINE Alu -11 301 1 1133 175 0 0 chrX 8297958 8298141 -154301789 + AluJb SINE Alu 127 309 -3 7695 51 3 0 chrX 8300218 8301127 -154298803 - Harlequin LTR ERV1 -2633 4263 3352 666 96 19 0 chrX 8301126 8301230 -154298700 - Harlequin LTR ERV1 -4322 2574 2469 * 5111 119 11 7 chrX 8301384 8302121 -154297809 + L1PA16 LINE L1 5426 6165 -1 218 274 16 16 chrX 8302291 8302353 -154297577 - MIR SINE MIR -115 147 86 232 258 15 15 chrX 8304178 8304244 -154295686 + MIR SINE MIR 79 144 -118 2176 178 140 88 chrX 8304874 8305475 -154294455 - MLT1E1 LTR MaLR -6 648 17 365 45 0 0 chrX 8305544 8305588 -154294342 + (TG)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chrX 8305594 8305620 -154294310 + (TA)n Simple_repeat Simple_repeat 1 26 0 222 186 31 41 chrX 8305650 8305747 -154294183 + (TTAAA)n Simple_repeat Simple_repeat 3 98 0 * 329 215 23 35 chrX 8305713 8305885 -154294045 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 252 260 35 0 chrX 8305802 8305975 -154293955 + (TTA)n Simple_repeat Simple_repeat 1 179 0 * 22 0 0 0 chrX 8305975 8305997 -154293933 + AT_rich Low_complexity Low_complexity 1 22 0 185 141 64 0 chrX 8305997 8306075 -154293855 + (TA)n Simple_repeat Simple_repeat 1 83 0 70 13 0 0 chrX 8306080 8306157 -154293773 + AT_rich Low_complexity Low_complexity 1 77 0 182 277 36 36 chrX 8306451 8306534 -154293396 + L2 LINE L2 3184 3266 -6 207 194 0 0 chrX 8308024 8308060 -154291870 + (CATA)n Simple_repeat Simple_repeat 4 39 0 25 0 0 0 chrX 8308060 8308085 -154291845 + AT_rich Low_complexity Low_complexity 1 25 0 3377 73 25 2 chrX 8308564 8309002 -154290928 - L1PA8 LINE L1 0 6172 5725 39 38 0 0 chrX 8309256 8309309 -154290621 + AT_rich Low_complexity Low_complexity 1 53 0 1026 197 0 0 chrX 8309309 8309487 -154290443 - AluJ SINE Alu -10 302 125 405 118 47 24 chrX 8309487 8309614 -154290316 + (TA)n Simple_repeat Simple_repeat 2 131 0 951 107 0 0 chrX 8309615 8309737 -154290193 - AluJ SINE Alu -190 122 1 1041 178 53 14 chrX 8310014 8310222 -154289708 - MLT1A1 LTR MaLR -149 216 1 980 251 66 11 chrX 8310298 8310585 -154289345 + LTR16A1 LTR ERVL 155 457 0 2023 122 0 11 chrX 8310673 8311006 -154288924 + AluSx SINE Alu 1 330 0 621 110 0 22 chrX 8311051 8311142 -154288788 + AluJ/FRAM SINE Alu 216 304 -8 2860 156 52 20 chrX 8313935 8314474 -154285456 - L1MD2 LINE L1 -376 5983 5428 188 220 143 22 chrX 8315236 8315302 -154284628 - L2 LINE L2 -314 2958 2877 1485 218 107 22 chrX 8315302 8315429 -154284501 + MSTD LTR MaLR 3 118 -278 1658 171 3 44 chrX 8315429 8315744 -154284186 + AluJb SINE Alu 1 302 -10 1485 218 107 22 chrX 8315744 8315979 -154283951 + MSTD LTR MaLR 118 396 0 188 220 143 22 chrX 8315979 8316003 -154283927 - L2 LINE L2 -395 2877 2857 200 292 0 0 chrX 8316116 8316181 -154283749 + A-rich Low_complexity Low_complexity 1 65 0 523 263 60 30 chrX 8316193 8316459 -154283471 + L1M4 LINE L1 2128 2401 -3745 206 240 67 96 chrX 8317139 8317243 -154282687 - MIR SINE MIR -63 145 45 216 328 107 16 chrX 8317623 8317745 -154282185 - MIR3 SINE MIR -63 145 13 284 222 0 0 chrX 8318012 8318066 -154281864 - MER94 DNA DNA -79 55 2 698 0 12 0 chrX 8318312 8318394 -154281536 + (CA)n Simple_repeat Simple_repeat 2 84 0 2903 216 63 38 chrX 8319307 8320237 -154279693 - L1M4 LINE L1 -1822 4324 3371 1091 162 66 5 chrX 8320522 8320720 -154279210 - L1MD3 LINE L1 -137 7858 7649 180 0 0 0 chrX 8321621 8321641 -154278289 + (A)n Simple_repeat Simple_repeat 1 20 0 2589 139 71 73 chrX 8323810 8324300 -154275630 - LTR2B LTR ERV1 -1 489 1 1845 147 3 3 chrX 8325201 8325517 -154274413 - AluJb SINE Alu 0 316 1 345 301 0 0 chrX 8325541 8325644 -154274286 - L1ME3 LINE L1 -3 6159 6057 1468 123 16 25 chrX 8325833 8326076 -154273854 - AluJo SINE Alu 0 312 72 2126 113 0 3 chrX 8326889 8327195 -154272735 - AluSx SINE Alu 0 306 2 181 328 134 0 chrX 8327196 8327263 -154272667 - L2 LINE L2 -40 3232 3157 3070 73 20 49 chrX 8327352 8327804 -154272126 + MLT2A1 LTR ERVL 1 439 -5 2653 46 0 0 chrX 8330228 8330533 -154269397 - AluY SINE Alu -6 305 1 207 0 0 0 chrX 8330618 8330641 -154269289 + (TG)n Simple_repeat Simple_repeat 2 24 0 1600 171 4 7 chrX 8330673 8330948 -154268982 - AluJb SINE Alu -30 282 9 1244 224 39 77 chrX 8332199 8332681 -154267249 + LTR37B LTR ERV1 1 464 -4 534 264 42 0 chrX 8334248 8334415 -154265515 - MER104 DNA Tc2 0 180 7 201 354 0 13 chrX 8334764 8334843 -154265087 - L2 LINE L2 -4 3268 3191 293 188 16 16 chrX 8334958 8335022 -154264908 - MER20 DNA MER1_type -155 64 1 1612 135 58 8 chrX 8335277 8335568 -154264362 + AluJo SINE Alu 12 315 0 29 70 0 0 chrX 8335897 8335954 -154263976 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chrX 8336089 8336125 -154263805 + AT_rich Low_complexity Low_complexity 1 36 0 1778 148 7 28 chrX 8337227 8337511 -154262419 + AluJo SINE Alu 10 287 -25 1711 174 51 18 chrX 8338008 8338341 -154261589 - MER2 DNA MER2_type 0 344 1 528 310 61 31 chrX 8339546 8339775 -154260155 - MIR SINE MIR -1 261 26 361 333 75 11 chrX 8340434 8340608 -154259322 + MIR SINE MIR 13 197 -65 1600 249 40 18 chrX 8340645 8341094 -154258836 + L1ME1 LINE L1 5703 6161 -5 218 31 0 31 chrX 8343092 8343124 -154256806 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 399 262 60 30 chrX 8343988 8344187 -154255743 - L1ME2 LINE L1 0 6166 5968 275 320 91 29 chrX 8345202 8345377 -154254553 + MLT1H LTR MaLR 218 403 -146 310 239 6 80 chrX 8345526 8345689 -154254241 + AluJb SINE Alu 1 151 -151 502 250 22 15 chrX 8346677 8346813 -154253117 + MIR SINE MIR 16 152 -110 747 149 9 0 chrX 8347023 8347137 -154252793 + FLAM_C SINE Alu 1 115 -18 213 312 134 55 chrX 8347655 8347857 -154252073 + L2 LINE L2 3039 3256 -16 270 81 0 0 chrX 8348016 8348053 -154251877 + (GGA)n Simple_repeat Simple_repeat 3 39 0 407 213 189 53 chrX 8349820 8350121 -154249809 - L1ME4a LINE L1 -46 6075 5734 440 272 20 27 chrX 8350517 8350664 -154249266 + MER5A DNA MER1_type 44 189 0 1921 136 3 19 chrX 8351842 8352159 -154247771 + AluSx SINE Alu 1 312 0 779 198 29 12 chrX 8354639 8354811 -154245119 + MER5B DNA MER1_type 4 178 0 183 42 0 0 chrX 8355880 8355904 -154244026 + (TG)n Simple_repeat Simple_repeat 2 25 0 1766 195 29 0 chrX 8355904 8356284 -154243646 - L1M4 LINE L1 -1897 4249 3859 284 250 11 34 chrX 8356964 8357052 -154242878 + AluSq/x SINE Alu 48 133 -170 7204 80 21 14 chrX 8357605 8358615 -154241315 + Harlequin LTR ERV1 4478 5494 -1402 230 312 214 0 chrX 8358807 8358980 -154240950 - L3 LINE CR1 -123 1454 1245 623 284 53 5 chrX 8359057 8359247 -154240683 - MIR SINE MIR -17 245 47 1797 220 27 34 chrX 8359740 8360274 -154239656 + L1MB8 LINE L1 5466 5990 -194 308 290 30 23 chrX 8360392 8360523 -154239407 - L1M4 LINE L1 -6406 136 5 1660 168 17 7 chrX 8360939 8361231 -154238699 + AluJb SINE Alu 1 295 -17 415 304 15 0 chrX 8361786 8361921 -154238009 + L1 LINE L1 3745 3881 -2265 1539 283 29 7 chrX 8361951 8362513 -154237417 - L1M4 LINE L1 -1098 5048 4475 1416 216 47 13 chrX 8362512 8362896 -154237034 + L1 LINE L1 3564 3960 -2186 * 263 221 15 15 chrX 8363104 8363172 -154236758 + L2 LINE L2 2995 3062 -251 1838 157 0 0 chrX 8363202 8363488 -154236442 - AluSx SINE Alu -26 286 1 1778 125 39 4 chrX 8363490 8363771 -154236159 - AluJo SINE Alu -21 291 1 303 239 98 69 chrX 8363814 8363980 -154235950 - MIR3 SINE MIR -5 203 35 249 212 212 0 chrX 8367207 8367273 -154232657 - MIR SINE MIR -150 112 33 794 137 0 68 chrX 8367819 8367965 -154231965 + AluJo SINE Alu 2 137 -175 396 281 67 67 chrX 8367966 8368176 -154231754 - L1MC4a LINE L1 -1812 5996 5787 194 210 32 0 chrX 8368342 8368404 -154231526 + C-rich Low_complexity Low_complexity 5 68 0 237 242 8 17 chrX 8368568 8368688 -154231242 + G-rich Low_complexity Low_complexity 4 122 0 300 188 0 0 chrX 8368827 8368896 -154231034 + G-rich Low_complexity Low_complexity 1 69 0 294 168 37 22 chrX 8369557 8369639 -154230291 + MER53 DNA DNA 1 116 -73 630 243 20 50 chrX 8369956 8370256 -154229674 - AluYa5 SINE Alu -10 291 1 545 124 58 66 chrX 8370256 8370393 -154229537 - L1MB4 LINE L1 -39 6141 6006 333 259 76 76 chrX 8371471 8371656 -154228274 + MER20B DNA MER1_type 5 189 -594 187 336 49 42 chrX 8372355 8372498 -154227432 + L2 LINE L2 2978 3121 -151 595 96 0 21 chrX 8373805 8373899 -154226031 + MER49 LTR ERV1 1 92 -831 426 244 65 32 chrX 8374439 8374562 -154225368 + MIR SINE MIR 16 142 -66 233 324 97 43 chrX 8375676 8375861 -154224069 + L2 LINE L2 2985 3179 -93 222 208 0 0 chrX 8376226 8376274 -154223656 + CT-rich Low_complexity Low_complexity 3 50 0 587 180 49 33 chrX 8377909 8378031 -154221899 - L2 LINE L2 -10 3262 3139 5925 186 33 6 chrX 8378250 8379416 -154220514 + L1P LINE L1 1403 2600 -3546 2124 218 33 22 chrX 8379610 8380069 -154219861 - Harlequin LTR ERV1 -3070 3826 3363 219 258 11 34 chrX 8380104 8380194 -154219736 + CT-rich Low_complexity Low_complexity 1 87 0 237 178 0 0 chrX 8381255 8381300 -154218630 + (CA)n Simple_repeat Simple_repeat 2 46 0 440 265 46 77 chrX 8381488 8381684 -154218246 - MIR SINE MIR -5 257 68 2504 39 0 3 chrX 8381828 8382138 -154217792 - AluY SINE Alu -2 309 1 1635 240 114 23 chrX 8382157 8382720 -154217210 + L1MC4a LINE L1 5326 5939 -1869 297 0 0 0 chrX 8385817 8385850 -154214080 + (TA)n Simple_repeat Simple_repeat 1 33 0 378 94 0 0 chrX 8385850 8385914 -154214016 + (GA)n Simple_repeat Simple_repeat 1 64 0 252 310 69 26 chrX 8386126 8386242 -154213688 - L2 LINE L2 -16 3256 3136 324 309 54 27 chrX 8389288 8389437 -154210493 + MIR SINE MIR 60 212 -50 22 35 0 0 chrX 8392354 8392383 -154207547 + GC_rich Low_complexity Low_complexity 1 29 0 1210 134 31 0 chrX 8393947 8394141 -154205789 - MER20 DNA MER1_type 0 219 20 268 350 56 33 chrX 8394141 8394321 -154205609 + MER5A DNA MER1_type 6 189 0 1189 170 18 22 chrX 8394661 8394884 -154205046 + MLT1A1 LTR MaLR 133 354 -11 1817 148 16 23 chrX 8395076 8395465 -154204465 + AluJb SINE Alu 1 387 0 231 182 0 0 chrX 8395805 8395849 -154204081 - MER116 DNA Mariner -26 54 11 242 323 97 0 chrX 8396250 8396343 -154203587 + MIR SINE MIR 31 132 -76 1575 160 0 26 chrX 8396722 8396990 -154202940 - AluJb SINE Alu -17 295 35 41 58 0 0 chrX 8397124 8397193 -154202737 + AT_rich Low_complexity Low_complexity 1 69 0 1505 160 183 9 chrX 8397202 8397540 -154202390 - MLT2C1 LTR ERVL 0 397 1 27 0 0 0 chrX 8397629 8397656 -154202274 + AT_rich Low_complexity Low_complexity 1 27 0 866 269 69 19 chrX 8397719 8398098 -154201832 + HAL1 LINE L1 1503 1900 -607 261 263 44 18 chrX 8398146 8398260 -154201670 + HAL1 LINE L1 2002 2118 -389 573 284 88 57 chrX 8398276 8398422 -154201508 + MLT1J LTR MaLR 1 141 -370 315 0 0 0 chrX 8398422 8398457 -154201473 + (TTA)n Simple_repeat Simple_repeat 1 35 0 975 161 0 0 chrX 8398458 8398613 -154201317 - FAM SINE Alu -19 156 2 573 284 88 57 chrX 8398613 8398953 -154200977 + MLT1J LTR MaLR 140 504 -7 522 229 123 29 chrX 8398986 8399230 -154200700 + HAL1 LINE L1 2241 2507 0 201 74 0 0 chrX 8400866 8400893 -154199037 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 1903 145 7 10 chrX 8401315 8401611 -154198319 - AluSx SINE Alu -17 295 1 985 244 125 72 chrX 8402187 8403083 -154196847 - L2 LINE L2 -6 3307 2362 328 330 37 0 chrX 8403243 8403352 -154196578 + MIR SINE MIR 2 114 -148 912 230 87 9 chrX 8403391 8403621 -154196309 - MIR SINE MIR 0 262 15 353 187 17 0 chrX 8404385 8404460 -154195470 + MIR SINE MIR 67 143 -65 901 166 12 12 chrX 8404472 8404635 -154195295 - MER5B DNA MER1_type -13 165 3 1031 156 12 0 chrX 8404645 8404812 -154195118 - MER5A DNA MER1_type 0 189 21 1031 174 28 19 chrX 8404826 8405039 -154194891 + MER58 DNA MER1_type 1 215 -2205 276 264 0 0 chrX 8405049 8405102 -154194828 - MER45 DNA AcHobo -125 53 1 1096 233 64 86 chrX 8405148 8405560 -154194370 + MER34 LTR ERV1 1 400 -142 1954 131 0 21 chrX 8405560 8405850 -154194080 - AluJo SINE Alu -14 298 15 1096 233 64 86 chrX 8405850 8405987 -154193943 + MER34 LTR ERV1 400 538 -4 297 0 0 0 chrX 8408896 8408929 -154191001 + (TA)n Simple_repeat Simple_repeat 1 33 0 264 59 0 0 chrX 8408997 8409031 -154190899 + (TG)n Simple_repeat Simple_repeat 1 34 0 1842 101 0 0 chrX 8409523 8409760 -154190170 + AluSg/x SINE Alu 69 305 -5 778 187 18 0 chrX 8409915 8410081 -154189849 + L1MD3 LINE L1 7822 7990 -5 38733 64 12 2 chrX 8410196 8416278 -154183652 + L1PA5 LINE L1 11 6154 0 246 336 53 0 chrX 8417182 8417295 -154182635 + MIR3 SINE MIR 4 122 -86 2346 133 50 0 chrX 8417314 8417698 -154182232 - MER57A LTR ERV1 0 403 1 227 286 31 57 chrX 8418096 8418288 -154181642 + LTR16C LTR ERVL 305 491 0 306 244 12 12 chrX 8420326 8420412 -154179518 + MLT1L LTR MaLR 420 505 -110 525 244 49 44 chrX 8420765 8420970 -154178960 + MLT1J2 LTR MaLR 1 206 -244 245 233 211 0 chrX 8420976 8421109 -154178821 + Zaphod DNA AcHobo 588 748 -3283 326 237 6 0 chrX 8422308 8422400 -154177530 + MER34 LTR ERV1 3 96 -446 1533 204 127 31 chrX 8422460 8422974 -154176956 + LTR48B LTR ERV1 82 644 0 245 276 26 0 chrX 8423005 8423081 -154176849 - L3 LINE CR1 -117 1460 1383 855 284 85 31 chrX 8423085 8423507 -154176423 - MLT1J2 LTR MaLR 0 450 6 605 311 116 19 chrX 8423520 8423736 -154176194 - L3 LINE CR1 -203 1374 1116 1818 169 0 7 chrX 8423736 8424038 -154175892 - AluJb SINE Alu -12 300 1 605 311 116 19 chrX 8424038 8424139 -154175791 - L3 LINE CR1 -461 1116 1026 989 272 106 44 chrX 8424413 8425241 -154174689 + L2 LINE L2 2430 3304 -9 199 255 29 88 chrX 8426450 8426475 -154173455 - L2 LINE L2 -2 3311 3286 2215 119 0 45 chrX 8426475 8426828 -154173102 - MER1B DNA MER1_type 0 337 1 199 255 29 88 chrX 8426828 8426904 -154173026 - L2 LINE L2 -27 3286 3216 535 249 50 50 chrX 8426976 8427177 -154172753 - L2 LINE L2 0 3313 3113 356 254 106 14 chrX 8427212 8427354 -154172576 + HAL1 LINE L1 1643 1797 -710 881 252 95 56 chrX 8427718 8428162 -154171768 + MLT1H LTR MaLR 89 549 0 1577 235 89 25 chrX 8429028 8429466 -154170464 + LTR16C LTR ERVL 26 491 0 324 0 0 0 chrX 8430539 8430575 -154169355 + (A)n Simple_repeat Simple_repeat 1 36 0 461 229 23 0 chrX 8433294 8433425 -154166505 + L1MD2 LINE L1 6196 6329 -30 2398 81 0 3 chrX 8433425 8433722 -154166208 - AluY SINE Alu -14 297 2 2287 101 3 0 chrX 8434133 8434439 -154165491 + AluSp SINE Alu 1 307 -6 248 288 47 88 chrX 8434834 8435004 -154164926 - MIR SINE MIR -70 192 30 1622 160 59 31 chrX 8435219 8435606 -154164324 - L1MB8 LINE L1 0 6178 5781 251 28 28 0 chrX 8435620 8435656 -154164274 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 248 288 47 88 chrX 8435700 8435870 -154164060 + MIR SINE MIR 30 192 -70 2086 124 0 25 chrX 8436265 8436579 -154163351 - AluSq SINE Alu -6 307 2 1486 159 4 0 chrX 8436580 8436832 -154163098 - L1MB8 LINE L1 -392 5786 5534 2133 134 0 0 chrX 8437639 8437938 -154161992 - AluJo SINE Alu -13 299 1 200 233 0 33 chrX 8438188 8438248 -154161682 + GA-rich Low_complexity Low_complexity 4 61 0 183 287 0 111 chrX 8438411 8438519 -154161411 + L3 LINE CR1 681 776 -801 1230 261 69 22 chrX 8438756 8439162 -154160768 + L3b LINE CR1 1102 1526 -57 2899 16 0 0 chrX 8441048 8441366 -154158564 + AluYb8 SINE Alu 1 318 0 186 277 0 0 chrX 8442241 8442288 -154157642 + L2 LINE L2 3264 3310 -3 711 272 100 21 chrX 8443356 8443595 -154156335 + MIR SINE MIR 2 259 -3 2108 139 0 0 chrX 8444055 8444349 -154155581 + AluJb SINE Alu 3 296 -16 1716 149 86 122 chrX 8444360 8444820 -154155110 + MLT1D LTR MaLR 1 441 -64 1714 163 58 4 chrX 8444820 8445096 -154154834 - AluJo SINE Alu -21 291 1 1716 149 86 122 chrX 8445096 8445159 -154154771 + MLT1D LTR MaLR 441 505 0 470 276 70 22 chrX 8445859 8446044 -154153886 + MIR SINE MIR 63 256 -6 251 227 45 0 chrX 8447747 8447835 -154152095 + (TA)n Simple_repeat Simple_repeat 2 93 0 1291 277 109 35 chrX 8450763 8451488 -154148442 + L1MC4a LINE L1 5257 6035 -1773 1016 224 9 9 chrX 8451554 8451777 -154148153 + MER58A DNA MER1_type 1 223 -1 270 282 34 60 chrX 8451892 8452009 -154147921 + MIR SINE MIR 99 212 -50 274 247 14 0 chrX 8452787 8452860 -154147070 + L1ME LINE L1 5589 5662 -459 1529 147 55 22 chrX 8452863 8453187 -154146743 + AluJb SINE Alu 1 333 0 1572 251 109 17 chrX 8453353 8453884 -154146046 - MLT1G1 LTR MaLR -8 587 8 262 146 0 0 chrX 8454009 8454050 -154145880 + L2 LINE L2 3268 3308 -5 895 126 0 16 chrX 8454135 8454262 -154145668 + FLAM_C SINE Alu 2 126 -7 212 122 24 0 chrX 8454426 8454467 -154145463 + T-rich Low_complexity Low_complexity 3 44 0 22 0 0 0 chrX 8454592 8454614 -154145316 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 8454852 8454881 -154145049 + AT_rich Low_complexity Low_complexity 1 29 0 1800 174 16 3 chrX 8455374 8455678 -154144252 + AluJo SINE Alu 1 308 -4 2092 114 44 0 chrX 8455881 8456179 -154143751 - AluSx SINE Alu 0 312 2 2255 86 3 29 chrX 8456437 8456819 -154143111 - AluSc SINE Alu 0 374 1 999 220 143 9 chrX 8456858 8457208 -154142722 - L1MB8 LINE L1 -5 6173 5777 4430 83 48 3 chrX 8457349 8457974 -154141956 + MER39B LTR ERV1 1 653 0 405 70 0 0 chrX 8457977 8458034 -154141896 + (CA)n Simple_repeat Simple_repeat 1 57 0 541 167 30 4 chrX 8458577 8458705 -154141225 + LTR49 LTR ERV1 418 595 0 746 333 61 12 chrX 8458726 8459152 -154140778 - LTR16A LTR ERVL 0 450 4 300 274 104 0 chrX 8459667 8459802 -154140128 - L1MB8 LINE L1 -450 5671 5523 1676 172 0 27 chrX 8459833 8460129 -154139801 - AluJb SINE Alu -24 288 1 614 208 0 0 chrX 8460141 8460247 -154139683 - FLAM_A SINE Alu -14 128 23 385 314 99 45 chrX 8460349 8460772 -154139158 - L1MB8 LINE L1 -759 5387 4942 424 49 49 0 chrX 8460909 8460970 -154138960 + LTR23 LTR ERV1 1 64 -373 308 286 61 0 chrX 8461058 8461156 -154138774 + MLT1J2 LTR MaLR 199 302 -148 1883 129 46 40 chrX 8461262 8461633 -154138297 - THE1C LTR MaLR 0 375 3 217 320 0 0 chrX 8461635 8461735 -154138195 + (TA)n Simple_repeat Simple_repeat 2 101 0 464 348 17 6 chrX 8462248 8462429 -154137501 - MIR SINE MIR -48 214 32 437 202 11 0 chrX 8462770 8462859 -154137071 + MIR3 SINE MIR 82 171 -37 816 143 34 11 chrX 8463191 8463366 -154136564 - MER33 DNA MER1_type 0 363 185 686 70 0 0 chrX 8463366 8463452 -154136478 + AluSq SINE Alu 1 86 -226 4409 166 57 56 chrX 8463452 8464522 -154135408 + MER11C LTR ERVK 1 1071 0 1617 101 0 14 chrX 8464522 8464739 -154135191 + AluSq SINE Alu 81 294 -19 719 215 6 0 chrX 8464739 8464900 -154135030 - MER33 DNA MER1_type -264 60 1 1964 164 10 0 chrX 8465304 8465602 -154134328 - AluJb SINE Alu -11 301 1 403 331 7 29 chrX 8465827 8465966 -154133964 - L2 LINE L2 -1 3271 3136 239 263 11 32 chrX 8466095 8466190 -154133740 + MER34 LTR ERV1 41 133 -409 360 253 71 33 chrX 8466471 8466653 -154133277 + MER34 LTR ERV1 353 541 -1 188 263 74 84 chrX 8466682 8466777 -154133153 - L2 LINE L2 -263 3009 2916 3489 113 116 62 chrX 8466866 8467242 -154132688 + LTR8A LTR ERV1 3 357 -370 1928 156 0 7 chrX 8467242 8467537 -154132393 - AluJb SINE Alu -19 293 1 3489 113 116 62 chrX 8467537 8467848 -154132082 + LTR8A LTR ERV1 357 727 0 603 159 139 20 chrX 8467875 8468026 -154131904 + MER33 DNA MER1_type 1 169 -155 4209 137 4 13 chrX 8468026 8468743 -154131187 + MER50 LTR ERV1 1 711 -23 714 97 111 7 chrX 8468744 8468888 -154131042 + MER33 DNA MER1_type 166 324 0 940 123 0 64 chrX 8469912 8470083 -154129847 - MER20 DNA MER1_type -59 160 1 481 191 106 176 chrX 8470734 8471336 -154128594 + MER34 LTR ERV1 1 560 -5 2411 81 3 0 chrX 8471936 8472232 -154127698 - AluSp SINE Alu -16 297 1 2040 150 0 3 chrX 8472380 8472680 -154127250 + AluJb SINE Alu 1 299 -13 1684 198 27 32 chrX 8474839 8475212 -154124718 + MLT1A2 LTR MaLR 4 374 0 2112 114 0 3 chrX 8475494 8475784 -154124146 + AluSx SINE Alu 1 289 -23 407 152 13 0 chrX 8476771 8476850 -154123080 + (TA)n Simple_repeat Simple_repeat 2 81 0 243 0 0 0 chrX 8476850 8476877 -154123053 + (CA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chrX 8476876 8476897 -154123033 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 2198 88 0 0 chrX 8476898 8477172 -154122758 - AluSg1 SINE Alu -35 274 1 336 331 97 6 chrX 8477501 8477676 -154122254 + MIR SINE MIR 66 256 -6 649 272 59 37 chrX 8477690 8477910 -154122020 - MIR SINE MIR 0 262 34 427 390 8 0 chrX 8477963 8478086 -154121844 - L2 LINE L2 0 3272 3149 1106 158 0 36 chrX 8478087 8478283 -154121647 - MER20 DNA MER1_type 0 219 31 2705 88 11 13 chrX 8478462 8478838 -154121092 + THE1C LTR MaLR 1 375 0 383 282 6 70 chrX 8479235 8479391 -154120539 - MLT1J2 LTR MaLR -60 390 245 561 213 128 16 chrX 8479408 8479596 -154120334 - MLT1J1 LTR MaLR -235 211 3 373 182 13 0 chrX 8481066 8481143 -154118787 + MER116 DNA Mariner 1 78 -2 23 54 0 0 chrX 8482582 8482619 -154117311 + AT_rich Low_complexity Low_complexity 1 37 0 220 189 0 0 chrX 8482754 8482791 -154117139 + CT-rich Low_complexity Low_complexity 4 40 0 1075 188 42 14 chrX 8483930 8484143 -154115787 + MER20 DNA MER1_type 1 219 0 3447 151 15 3 chrX 8484227 8484815 -154115115 + MER50 LTR ERV1 10 604 -130 871 137 33 93 chrX 8484816 8484935 -154114995 + MER5A DNA MER1_type 16 122 -67 2425 97 0 0 chrX 8484935 8485245 -154114685 - AluSg SINE Alu 0 310 1 871 137 33 93 chrX 8485245 8485308 -154114622 + MER5A DNA MER1_type 122 187 -2 224 269 60 15 chrX 8485312 8485379 -154114551 + MER5A DNA MER1_type 120 189 0 210 213 0 0 chrX 8485397 8485436 -154114494 + GA-rich Low_complexity Low_complexity 2 43 -5 2028 130 3 17 chrX 8485436 8485735 -154114195 - AluJb SINE Alu -14 298 4 42058 41 1 0 chrX 8487170 8493322 -154106608 + L1PA4 LINE L1 1 6155 0 722 209 0 8 chrX 8493898 8494032 -154105898 + FLAM_A SINE Alu 1 133 0 2261 35 43 3 chrX 8495668 8495950 -154103980 - AluY SINE Alu -18 293 1 1838 144 14 0 chrX 8496180 8496464 -154103466 - AluJb SINE Alu -19 293 6 25 0 0 0 chrX 8497499 8497524 -154102406 + AT_rich Low_complexity Low_complexity 1 25 0 2274 129 0 0 chrX 8497687 8497997 -154101933 + AluSx SINE Alu 1 310 -2 2374 96 0 13 chrX 8499215 8499529 -154100401 - AluSq SINE Alu -3 310 1 613 176 72 93 chrX 8499698 8499891 -154100039 + MER5A DNA MER1_type 1 189 0 198 328 0 0 chrX 8500246 8500310 -154099620 - MIR3 SINE MIR -3 205 142 2359 60 0 0 chrX 8501913 8502239 -154097691 + AluY SINE Alu 1 326 0 543 138 75 0 chrX 8502533 8502627 -154097303 - L1PB4 LINE L1 -7 6149 6049 2621 36 0 10 chrX 8502675 8502983 -154096947 - AluY SINE Alu -5 306 2 621 254 41 53 chrX 8503275 8503594 -154096336 + L1ME2 LINE L1 2184 2498 -3898 * 755 169 26 21 chrX 8503588 8503777 -154096153 + L1ME2 LINE L1 2969 3158 -3057 2259 91 0 28 chrX 8503786 8504105 -154095825 + AluSx SINE Alu 1 310 -2 3245 236 93 35 chrX 8504105 8504965 -154094965 + L1ME2 LINE L1 4001 4810 -1423 2484 55 7 0 chrX 8504965 8505272 -154094658 - AluY SINE Alu -2 309 1 3245 236 93 35 chrX 8505272 8506182 -154093748 + L1ME2 LINE L1 4810 5911 -322 3653 76 0 8 chrX 8506182 8506671 -154093259 + L1PA14 LINE L1 5677 6161 0 3245 236 93 35 chrX 8506671 8507005 -154092925 + L1ME2 LINE L1 5911 6224 -9 2389 99 3 0 chrX 8507210 8507512 -154092418 - AluSp SINE Alu -10 303 1 1104 171 0 6 chrX 8507796 8507972 -154091958 - AluJb SINE Alu -8 304 130 352 170 0 20 chrX 8507982 8508062 -154091868 - AluJ/FLAM SINE Alu -242 60 6 1496 44 0 6 chrX 8508194 8508374 -154091556 - AluY SINE Alu -117 194 16 183 156 0 0 chrX 8509762 8509794 -154090136 + GA-rich Low_complexity Low_complexity 5 36 0 203 278 5 96 chrX 8509822 8510009 -154089921 + GA-rich Low_complexity Low_complexity 6 175 0 353 202 12 0 chrX 8510627 8510711 -154089219 + MER53 DNA DNA 1 85 -104 337 158 66 0 chrX 8510834 8510910 -154089020 + MER53 DNA DNA 105 185 -4 249 108 0 0 chrX 8511060 8511097 -154088833 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 254 231 64 0 chrX 8512394 8512472 -154087458 - MIR SINE MIR -77 185 103 565 264 19 7 chrX 8512677 8512832 -154087098 + MIR SINE MIR 57 213 -49 322 311 108 20 chrX 8516662 8516810 -154083120 + MIR SINE MIR 2 162 -100 231 158 85 61 chrX 8517286 8517368 -154082562 + MIR SINE MIR 179 262 0 227 350 134 29 chrX 8518040 8518317 -154081613 - L2 LINE L2 -90 3182 2877 206 228 0 0 chrX 8518905 8518962 -154080968 + (TTA)n Simple_repeat Simple_repeat 3 59 0 180 364 46 5 chrX 8519190 8519385 -154080545 - L2 LINE L2 -543 2771 2569 192 77 0 0 chrX 8520069 8520095 -154079835 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 432 229 62 0 chrX 8521409 8521505 -154078425 + MER5A DNA MER1_type 4 105 -84 2566 141 14 39 chrX 8521629 8522068 -154077862 - MSTA LTR MaLR 0 428 1 307 299 83 25 chrX 8522118 8522275 -154077655 - MER5A DNA MER1_type 0 189 24 2080 111 4 0 chrX 8522462 8522786 -154077144 + AluSx SINE Alu 3 327 0 2257 128 0 0 chrX 8523093 8523405 -154076525 + AluSx SINE Alu 1 312 0 1660 158 37 11 chrX 8523468 8523741 -154076189 + AluJb SINE Alu 1 280 -32 2480 146 36 5 chrX 8523885 8524296 -154075634 + MSTB LTR MaLR 1 424 -2 609 301 26 0 chrX 8524432 8524625 -154075305 + MIR SINE MIR 3 200 -62 21 0 0 0 chrX 8525975 8525996 -154073934 + AT_rich Low_complexity Low_complexity 1 21 0 189 94 0 0 chrX 8526410 8526442 -154073488 + (T)n Simple_repeat Simple_repeat 1 32 0 242 275 14 0 chrX 8528594 8528663 -154071267 - MIR3 SINE MIR -6 202 133 843 176 59 12 chrX 8529171 8529341 -154070589 - MER5A DNA MER1_type -2 187 10 21 0 0 0 chrX 8529958 8529979 -154069951 + AT_rich Low_complexity Low_complexity 1 21 0 1697 157 7 38 chrX 8530065 8530385 -154069545 - AluJb SINE Alu 0 311 1 2455 52 13 7 chrX 8530589 8530898 -154069032 - AluY SINE Alu 0 311 1 1687 148 44 19 chrX 8532666 8532971 -154066959 + AluJo SINE Alu 5 316 0 258 32 0 0 chrX 8533353 8533384 -154066546 + (CA)n Simple_repeat Simple_repeat 2 32 0 668 280 97 41 chrX 8533525 8533935 -154065995 + MLT1H LTR MaLR 15 549 0 255 287 167 33 chrX 8534117 8534267 -154065663 + MIR SINE MIR 93 262 0 1704 124 0 4 chrX 8534612 8534845 -154065085 - AluJb SINE Alu -80 232 1 707 224 0 0 chrX 8535099 8535246 -154064684 - MER58B DNA MER1_type 0 341 195 7440 41 0 0 chrX 8535274 8536501 -154063429 - L1PA5 LINE L1 0 6154 4930 923 28 14 35 chrX 8537979 8538120 -154061810 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 327 158 40 119 chrX 8538346 8538447 -154061483 + MER20 DNA MER1_type 70 162 -57 1885 157 38 0 chrX 8538748 8539041 -154060889 + AluJb SINE Alu 1 304 -8 2149 87 18 0 chrX 8539423 8539729 -154060201 - AluY SINE Alu 0 311 1 21 110 0 0 chrX 8539937 8540028 -154059902 + AT_rich Low_complexity Low_complexity 1 91 0 234 109 65 0 chrX 8541379 8541425 -154058505 + A-rich Low_complexity Low_complexity 2 50 0 2446 40 10 7 chrX 8542933 8543232 -154056698 + AluY SINE Alu 1 300 -11 2203 81 7 55 chrX 8543609 8543919 -154056011 - AluSq SINE Alu -18 295 1 1668 52 64 0 chrX 8544011 8544244 -154055686 + L1PB1 LINE L1 5534 5781 -370 261 180 0 0 chrX 8544245 8544295 -154055635 + (TG)n Simple_repeat Simple_repeat 2 51 0 2527 103 0 5 chrX 8544313 8544681 -154055249 + L1PB1 LINE L1 5785 6150 -1 223 248 8 39 chrX 8544687 8544699 -154055231 + A-rich Low_complexity Low_complexity 2 13 -113 217 49 0 49 chrX 8544699 8544740 -154055190 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 223 248 8 39 chrX 8544740 8544856 -154055074 + A-rich Low_complexity Low_complexity 13 126 0 238 179 36 0 chrX 8544895 8544951 -154054979 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chrX 8545169 8545191 -154054739 + AT_rich Low_complexity Low_complexity 1 22 0 574 276 108 20 chrX 8545507 8545757 -154054173 - L3 LINE CR1 -514 1063 792 2093 145 22 11 chrX 8546157 8546522 -154053408 - MER31-int LTR ERV1 -4400 536 168 26 30 0 0 chrX 8546695 8546728 -154053202 + AT_rich Low_complexity Low_complexity 1 33 0 210 64 21 43 chrX 8547230 8547277 -154052653 + (AGGGGG)n Simple_repeat Simple_repeat 5 50 0 207 325 98 32 chrX 8548555 8548678 -154051252 - L2 LINE L2 -3 3269 3139 1127 153 0 6 chrX 8548694 8548864 -154051066 + AluJb SINE Alu 1 169 -143 230 224 0 52 chrX 8549024 8549082 -154050848 - L2 LINE L2 -17 3296 3242 2198 47 18 4 chrX 8549298 8549607 -154050323 - AluY SINE Alu 0 313 1 1943 106 7 18 chrX 8549607 8549912 -154050018 - AluSq SINE Alu 0 313 38 3555 113 25 7 chrX 8549916 8550480 -154049450 - Tigger3b DNA MER2_type -657 574 1 474 191 38 38 chrX 8550480 8550610 -154049320 + MER34C LTR ERV1 456 585 0 1743 168 135 25 chrX 8550610 8551005 -154048925 + MLT1D LTR MaLR 67 505 0 188 279 49 0 chrX 8551015 8551076 -154048854 - L2 LINE L2 -944 2370 2307 325 328 62 62 chrX 8551212 8551300 -154048630 - L2 LINE L2 -1180 2134 2047 1713 167 46 7 chrX 8551300 8551582 -154048348 - AluJb SINE Alu -18 294 2 325 328 62 62 chrX 8551582 8552008 -154047922 - L2 LINE L2 -1266 2048 1620 2179 114 0 25 chrX 8552061 8552376 -154047554 - AluSx SINE Alu -5 307 1 2178 116 36 18 chrX 8552838 8553167 -154046763 - MER1B DNA MER1_type -2 335 1 475 329 121 26 chrX 8554247 8554560 -154045370 + L2 LINE L2 2397 2739 -575 346 187 93 173 chrX 8554628 8554917 -154045013 + MER5C DNA MER1_type 14 279 -45 809 201 65 0 chrX 8554941 8555110 -154044820 + MER5A DNA MER1_type 10 189 0 630 183 36 29 chrX 8555144 8555281 -154044649 + MER3 DNA MER1_type 72 209 0 32 26 0 0 chrX 8556114 8556153 -154043777 + AT_rich Low_complexity Low_complexity 1 39 0 2469 88 0 0 chrX 8556549 8556856 -154043074 - AluSx SINE Alu -5 307 1 11899 27 6 10 chrX 8556917 8559095 -154040835 + L1PA4 LINE L1 3971 6154 -1 24 85 0 0 chrX 8559454 8559513 -154040417 + AT_rich Low_complexity Low_complexity 1 59 0 252 122 0 0 chrX 8559575 8559616 -154040314 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 498 75 0 0 chrX 8559616 8559683 -154040247 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 754 139 47 31 chrX 8559692 8559821 -154040109 - FLAM_C SINE Alu -2 131 1 282 281 165 16 chrX 8560077 8560198 -154039732 - MIR SINE MIR -96 166 28 23 54 0 0 chrX 8560314 8560351 -154039579 + AT_rich Low_complexity Low_complexity 1 37 0 232 365 103 19 chrX 8560505 8560661 -154039269 - L2 LINE L2 0 3272 3104 1007 157 37 42 chrX 8560696 8560913 -154039017 + MER20 DNA MER1_type 1 216 -3 981 108 23 0 chrX 8560959 8561089 -154038841 + AluJb SINE Alu 1 133 -179 265 42 21 42 chrX 8561089 8561137 -154038793 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 937 185 0 0 chrX 8561149 8561300 -154038630 + AluJb SINE Alu 129 279 -33 225 0 0 0 chrX 8561300 8561325 -154038605 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1798 117 51 18 chrX 8561456 8561826 -154038104 + Tigger3(Golem) DNA MER2_type 1 3028 -1 236 318 234 7 chrX 8561967 8562261 -154037669 + L2 LINE L2 2715 3060 -212 740 145 192 47 chrX 8562279 8562474 -154037456 - AluJo SINE Alu 0 305 86 372 279 94 41 chrX 8562481 8562725 -154037205 + LTR33 LTR ERVL 25 281 -240 230 262 24 0 chrX 8562755 8562839 -154037091 + LTR33 LTR ERVL 373 458 -63 366 331 44 7 chrX 8563263 8563399 -154036531 - L2 LINE L2 -7 3265 3125 210 71 0 0 chrX 8563890 8563918 -154036012 + (TG)n Simple_repeat Simple_repeat 1 28 0 925 240 83 0 chrX 8564184 8564388 -154035542 - MER58A DNA MER1_type 0 224 4 21 0 0 0 chrX 8564655 8564676 -154035254 + AT_rich Low_complexity Low_complexity 1 21 0 2093 103 22 3 chrX 8564696 8565015 -154034915 + L1MB7 LINE L1 5841 6165 -19 269 200 0 33 chrX 8565046 8565106 -154034824 + L1ME LINE L1 5551 5608 -513 245 284 95 21 chrX 8565362 8565457 -154034473 - MIR SINE MIR -48 214 113 223 298 235 9 chrX 8565591 8565906 -154034024 + L2 LINE L2 2578 2963 -351 206 256 13 0 chrX 8566032 8566110 -154033820 + CT-rich Low_complexity Low_complexity 4 82 0 217 272 291 10 chrX 8566116 8566219 -154033711 + L2 LINE L2 3141 3272 0 1087 157 13 57 chrX 8567110 8567339 -154032591 - MER20 DNA MER1_type 0 219 1 213 255 41 92 chrX 8570718 8570816 -154029114 + MIR3 SINE MIR 70 162 -46 230 220 0 51 chrX 8570816 8570875 -154029055 + GA-rich Low_complexity Low_complexity 3 58 0 335 264 31 78 chrX 8571905 8572034 -154027896 - MIR SINE MIR -108 154 32 1857 240 103 20 chrX 8572122 8572668 -154027262 + MLT1E LTR MaLR 1 591 -2 21 0 0 0 chrX 8572923 8572944 -154026986 + AT_rich Low_complexity Low_complexity 1 21 0 232 339 126 24 chrX 8573563 8573690 -154026240 + MIR SINE MIR 27 166 -96 5778 114 18 10 chrX 8573695 8574012 -154025918 + L1PA16 LINE L1 4872 5185 -981 2133 113 7 13 chrX 8574012 8574322 -154025608 + AluSc SINE Alu 1 308 -1 5778 114 18 10 chrX 8574322 8575310 -154024620 + L1PA16 LINE L1 5185 6166 0 21 0 0 0 chrX 8575347 8575368 -154024562 + AT_rich Low_complexity Low_complexity 1 21 0 2436 82 0 0 chrX 8575458 8575761 -154024169 - AluSg SINE Alu -7 303 1 3706 194 25 55 chrX 8575775 8577180 -154022750 - L1MCa LINE L1 -4861 1046 337 7789 17 0 2 chrX 8577180 8578390 -154021540 - L1PA3 LINE L1 0 6155 4947 3706 194 25 55 chrX 8578390 8578712 -154021218 - L1MCa LINE L1 -5570 337 7 2317 102 0 3 chrX 8579072 8579367 -154020563 + AluSx SINE Alu 1 294 -18 200 270 132 53 chrX 8579367 8579409 -154020521 + L3 LINE CR1 1079 1116 -461 2521 171 85 43 chrX 8579409 8580007 -154019923 - MLT1E2 LTR MaLR -2 624 2 200 270 132 53 chrX 8580007 8580153 -154019777 + L3 LINE CR1 1116 1282 -295 399 302 60 9 chrX 8580167 8580283 -154019647 - L2 LINE L2 -3 3269 3148 6860 33 8 0 chrX 8580764 8582065 -154017865 + L1PA5 LINE L1 4868 6180 0 4167 138 19 19 chrX 8582105 8582807 -154017123 - L1MB4 LINE L1 -1 6179 5475 261 0 0 0 chrX 8582807 8582836 -154017094 + (TG)n Simple_repeat Simple_repeat 2 30 0 4167 138 19 19 chrX 8582836 8582891 -154017039 - L1MB4 LINE L1 -704 5476 5422 379 265 29 10 chrX 8583105 8583207 -154016723 + L3 LINE CR1 1405 1508 -69 524 273 162 15 chrX 8583433 8583631 -154016299 - MIR SINE MIR -5 257 31 198 171 0 0 chrX 8584586 8584627 -154015303 + CT-rich Low_complexity Low_complexity 1 41 0 336 249 117 121 chrX 8585433 8585690 -154014240 - MIR SINE MIR -6 256 1 1703 175 24 15 chrX 8585970 8586308 -154013622 - MER58B DNA MER1_type 0 341 1 620 174 16 0 chrX 8586521 8586642 -154013288 - L1MD2 LINE L1 0 6359 6237 324 102 0 0 chrX 8586687 8586736 -154013194 + (TG)n Simple_repeat Simple_repeat 1 49 0 2201 186 32 0 chrX 8586761 8587202 -154012728 - L1MD1 LINE L1 -183 6059 5605 200 252 30 126 chrX 8587339 8587474 -154012456 - MIR SINE MIR -63 145 24 617 262 12 18 chrX 8588062 8588226 -154011704 + MER5A DNA MER1_type 11 173 -16 33 0 0 0 chrX 8588274 8588307 -154011623 + AT_rich Low_complexity Low_complexity 1 33 0 959 103 7 0 chrX 8589604 8589750 -154010180 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 2010 118 4 0 chrX 8589750 8590029 -154009901 - AluSx SINE Alu -32 280 1 396 289 191 36 chrX 8590844 8591069 -154008861 - MIR SINE MIR -1 261 2 222 176 0 0 chrX 8591252 8591303 -154008627 + CT-rich Low_complexity Low_complexity 2 52 0 276 91 0 0 chrX 8591315 8591359 -154008571 + (GA)n Simple_repeat Simple_repeat 1 44 0 214 296 0 0 chrX 8593890 8593944 -154005986 + CT-rich Low_complexity Low_complexity 1 54 0 200 94 0 31 chrX 8594109 8594141 -154005789 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 6622 76 23 3 chrX 8594214 8595612 -154004318 + L1PA11 LINE L1 4754 6174 0 183 80 0 0 chrX 8595725 8595750 -154004180 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 173 39 0 chrX 8595753 8595805 -154004125 + (TA)n Simple_repeat Simple_repeat 2 55 0 400 317 122 35 chrX 8597982 8598212 -154001718 - MIR SINE MIR 0 262 13 325 367 53 20 chrX 8598268 8598513 -154001417 + L2 LINE L2 2422 2674 -640 462 133 0 0 chrX 8598519 8598594 -154001336 + MADE1 DNA Mariner 6 80 0 244 280 156 82 chrX 8598717 8598999 -154000931 + L2 LINE L2 3008 3310 -3 244 276 13 13 chrX 8599004 8599080 -154000850 + CT-rich Low_complexity Low_complexity 1 76 0 433 285 0 0 chrX 8599340 8599463 -154000467 + HsTC2 DNA Tc2 79 201 -1697 267 54 0 0 chrX 8599582 8599619 -154000311 + (GA)n Simple_repeat Simple_repeat 2 38 0 355 277 36 0 chrX 8599650 8599762 -154000168 + HsTC2 DNA Tc2 1017 1132 -766 231 145 26 79 chrX 8599984 8600060 -153999870 + HsTC2 DNA Tc2 1669 1740 -158 377 206 122 8 chrX 8600124 8600255 -153999675 + HsTC2 DNA Tc2 1745 1890 -8 369 309 54 30 chrX 8600942 8601110 -153998820 - MIR SINE MIR -6 256 85 23 54 0 0 chrX 8601613 8601650 -153998280 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 8601818 8601840 -153998090 + AT_rich Low_complexity Low_complexity 1 22 0 253 241 96 36 chrX 8602490 8602573 -153997357 + L2 LINE L2 3182 3269 -3 24 0 0 0 chrX 8604738 8604762 -153995168 + AT_rich Low_complexity Low_complexity 1 24 0 258 393 61 0 chrX 8607042 8607205 -153992725 - MIR SINE MIR -56 206 34 2305 109 0 0 chrX 8607824 8608135 -153991795 - AluSx SINE Alu -1 311 1 230 295 162 29 chrX 8608603 8608708 -153991222 + MIR3 SINE MIR 5 123 -85 363 351 8 0 chrX 8608773 8608904 -153991026 - L2 LINE L2 -1 3312 3181 528 300 24 15 chrX 8609510 8609798 -153990132 - MLT1I LTR MaLR 0 409 83 417 324 60 42 chrX 8610180 8610396 -153989534 + L3 LINE CR1 607 826 -751 182 219 203 16 chrX 8610573 8610637 -153989293 + L3 LINE CR1 1068 1143 -434 992 184 87 5 chrX 8610673 8610880 -153989050 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrX 8611033 8611054 -153988876 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 217 364 17 17 chrX 8611312 8611430 -153988500 - MIR SINE MIR -61 147 30 988 284 61 77 chrX 8611766 8611843 -153988087 + L2 LINE L2 2537 2614 -699 999 168 42 37 chrX 8611843 8612057 -153987873 - MER20 DNA MER1_type -4 215 1 988 284 61 77 chrX 8612057 8612171 -153987759 + L2 LINE L2 2614 2728 -585 306 0 0 0 chrX 8612171 8612205 -153987725 + (CA)n Simple_repeat Simple_repeat 2 35 0 2806 56 0 6 chrX 8612205 8612564 -153987366 + L1PB1 LINE L1 5793 6149 -2 988 284 61 77 chrX 8612564 8612827 -153987103 + L2 LINE L2 2727 2967 -346 1886 203 35 60 chrX 8612827 8613345 -153986585 + MLT1D LTR MaLR 1 505 0 988 284 61 77 chrX 8613345 8613525 -153986405 + L2 LINE L2 2967 3148 -165 184 244 22 0 chrX 8615287 8615332 -153984598 - L2 LINE L2 -4 3268 3223 1693 187 3 16 chrX 8615431 8615746 -153984184 - AluJb SINE Alu -1 311 1 1481 189 6 6 chrX 8615798 8616110 -153983820 + L1MD3 LINE L1 7474 7785 -210 1105 180 0 3 chrX 8616111 8616322 -153983608 + AluJb SINE Alu 2 283 -29 617 13 0 25 chrX 8616337 8616416 -153983514 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 679 205 78 0 chrX 8616416 8616621 -153983309 + L1MD3 LINE L1 7775 7995 0 214 270 30 20 chrX 8616674 8616774 -153983156 + (CAGAGA)n Simple_repeat Simple_repeat 6 106 0 218 194 48 0 chrX 8618251 8618313 -153981617 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 470 99 33 211 chrX 8618318 8618470 -153981460 - MER20 DNA MER1_type -5 214 90 24 53 0 0 chrX 8618484 8618522 -153981408 + AT_rich Low_complexity Low_complexity 1 38 0 266 289 40 0 chrX 8619602 8619678 -153980252 + L2 LINE L2 3230 3308 -5 636 352 36 0 chrX 8619716 8619935 -153979995 + MIR SINE MIR 19 245 -17 240 312 113 28 chrX 8620155 8620296 -153979634 + MIR SINE MIR 86 238 -24 210 225 0 0 chrX 8620773 8620813 -153979117 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 765 199 8 0 chrX 8622274 8622405 -153977525 + FLAM_A SINE Alu 1 132 -1 2423 152 79 31 chrX 8622430 8622912 -153977018 + MLT1D LTR MaLR 1 505 0 358 291 26 17 chrX 8623036 8623153 -153976777 + MER5A DNA MER1_type 29 146 -43 2146 204 77 54 chrX 8623156 8623416 -153976514 - MLT1E LTR MaLR 0 593 341 830 125 0 21 chrX 8623416 8623560 -153976370 - L1PB1 LINE L1 0 6151 6011 2146 204 77 54 chrX 8623560 8623858 -153976072 - MLT1E LTR MaLR -252 341 22 448 269 174 50 chrX 8624448 8624805 -153975125 + MLT1J2 LTR MaLR 46 446 -4 254 245 157 20 chrX 8625444 8625546 -153974384 - MIR SINE MIR -129 133 18 206 287 61 12 chrX 8625698 8625862 -153974068 + (TATATG)n Simple_repeat Simple_repeat 3 174 0 182 250 163 25 chrX 8625874 8625954 -153973976 - MIR SINE MIR -147 115 25 213 39 0 0 chrX 8626317 8626343 -153973587 + (TA)n Simple_repeat Simple_repeat 2 27 0 198 103 0 0 chrX 8626451 8626480 -153973450 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 888 165 198 0 chrX 8626845 8627027 -153972903 - MER20 DNA MER1_type 0 219 2 259 264 0 66 chrX 8629820 8629911 -153970019 + L2 LINE L2 2545 2629 -685 2287 200 49 9 chrX 8629942 8630473 -153969457 - L1MB8 LINE L1 -13 6165 5614 335 125 0 16 chrX 8630630 8630694 -153969236 - L1MA5 LINE L1 -6 6294 6232 396 343 67 46 chrX 8630724 8631007 -153968923 + L2 LINE L2 2688 2976 -338 572 279 102 26 chrX 8631009 8631235 -153968695 + MIR SINE MIR 7 249 -13 259 389 94 45 chrX 8631223 8631488 -153968442 + L2 LINE L2 2987 3264 -8 * 1080 255 107 41 chrX 8631498 8631985 -153967945 + LTR33 LTR ERVL 1 519 -2 2501 145 20 92 chrX 8632878 8633422 -153966508 - MLT1D LTR MaLR 0 505 1 29 0 0 0 chrX 8633424 8633453 -153966477 + AT_rich Low_complexity Low_complexity 1 29 0 208 274 48 48 chrX 8634177 8634261 -153965669 - L2 LINE L2 -52 3220 3137 601 196 8 15 chrX 8634468 8634601 -153965329 + Charlie7 DNA MER1_type 5 136 -2476 1119 212 83 50 chrX 8634619 8635095 -153964835 - MER39 LTR ERV1 -33 674 1 632 293 94 17 chrX 8635186 8635537 -153964393 + Charlie7 DNA MER1_type 346 723 -1889 235 221 172 0 chrX 8635528 8635650 -153964280 + Charlie7 DNA MER1_type 2416 2558 -54 * 417 39 0 0 chrX 8636980 8637031 -153962899 + (TG)n Simple_repeat Simple_repeat 1 51 0 428 284 25 50 chrX 8638466 8638667 -153961263 + MIR SINE MIR 1 196 -66 217 284 0 63 chrX 8638734 8638829 -153961101 - MIR3 SINE MIR -38 170 82 3855 193 30 42 chrX 8639970 8640865 -153959065 - L1M4 LINE L1 -5149 1393 510 646 319 32 30 chrX 8641054 8641455 -153958475 + MLT1I LTR MaLR 2 403 -6 26734 96 11 14 chrX 8641950 8646051 -153953879 + L1P LINE L1 11 4101 -2045 2149 53 0 0 chrX 8646051 8646316 -153953614 + L1PA6 LINE L1 5889 6154 0 22 56 0 0 chrX 8646597 8646633 -153953297 + AT_rich Low_complexity Low_complexity 1 36 0 2516 122 11 82 chrX 8646690 8647151 -153952779 + MSTC LTR MaLR 1 428 0 323 275 12 69 chrX 8647309 8647469 -153952461 - L1MC4a LINE L1 -1870 5938 5788 2080 105 0 66 chrX 8647698 8648032 -153951898 + AluSx SINE Alu 1 312 0 820 216 18 48 chrX 8648180 8648407 -153951523 - MER74A LTR ERVL 0 558 339 232 262 201 27 chrX 8648446 8648595 -153951335 - MER74B LTR ERVL -395 227 53 2175 229 54 0 chrX 8648595 8649131 -153950799 - L1ME1 LINE L1 -123 6043 5479 266 302 57 19 chrX 8649514 8649620 -153950310 + MLT1J LTR MaLR 378 487 -24 290 330 141 10 chrX 8649940 8650146 -153949784 + MIR SINE MIR 12 244 -18 539 315 25 38 chrX 8650752 8650990 -153948940 + MIR SINE MIR 18 252 -10 * 609 284 37 11 chrX 8650970 8651160 -153948770 - MIR SINE MIR -48 214 20 21 0 0 0 chrX 8651619 8651640 -153948290 + AT_rich Low_complexity Low_complexity 1 21 0 502 208 20 25 chrX 8652004 8652574 -153947356 + (TA)n Simple_repeat Simple_repeat 1 567 0 261 261 29 0 chrX 8652574 8652643 -153947287 + (TATG)n Simple_repeat Simple_repeat 4 74 0 597 165 23 23 chrX 8652644 8652862 -153947068 + (TA)n Simple_repeat Simple_repeat 1 218 0 451 230 60 0 chrX 8653286 8653386 -153946544 + MER81 DNA DNA 1 106 -8 959 281 56 42 chrX 8654446 8654805 -153945125 + LTR16B LTR ERVL 3 366 -98 330 317 17 17 chrX 8656746 8656866 -153943064 + MIR3 SINE MIR 78 197 -11 2174 84 28 0 chrX 8656937 8657221 -153942709 - AluSg SINE Alu -18 292 1 239 173 19 0 chrX 8658788 8658840 -153941090 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 293 96 21 chrX 8658976 8659215 -153940715 + MIR SINE MIR 4 260 -2 353 246 93 0 chrX 8659641 8659759 -153940171 + MER103 DNA DNA 5 133 -33 233 296 17 43 chrX 8659986 8660101 -153939829 + 7SK RNA RNA 10 121 -72 220 297 20 40 chrX 8660294 8660395 -153939535 - MER5A DNA MER1_type -1 188 90 196 304 133 30 chrX 8660295 8660430 -153939500 + MER5A DNA MER1_type 17 165 -24 * 215 336 115 26 chrX 8660450 8660563 -153939367 + MER5B DNA MER1_type 10 132 -46 1060 80 0 7 chrX 8661391 8661541 -153938389 - L1PB1 LINE L1 0 6151 6003 1545 183 123 144 chrX 8661584 8662388 -153937542 - L1MC4a LINE L1 -15 7793 7007 261 111 0 0 chrX 8662538 8662574 -153937356 + Alu SINE Alu 1 36 -266 2113 125 13 0 chrX 8662638 8662943 -153936987 + AluSx SINE Alu 1 309 -3 557 266 8 0 chrX 8663349 8663477 -153936453 - MER58B DNA MER1_type -16 325 197 2408 72 0 0 chrX 8665888 8666181 -153933749 - AluY SINE Alu -18 293 1 324 326 49 56 chrX 8666386 8666530 -153933400 + L2 LINE L2 3115 3257 -15 2428 183 23 2 chrX 8667686 8668173 -153931757 - L1MB7 LINE L1 -19 6165 5669 365 298 16 32 chrX 8668335 8668459 -153931471 + MER5A DNA MER1_type 68 189 0 496 186 20 20 chrX 8668474 8668576 -153931354 + MER5A DNA MER1_type 9 110 -79 4477 125 15 4 chrX 8668594 8669587 -153930343 + L1PA16 LINE L1 4886 5892 -274 690 231 0 66 chrX 8669611 8669793 -153930137 + MER5B DNA MER1_type 5 174 -4 1795 110 140 10 chrX 8669817 8670117 -153929813 - MER1B DNA MER1_type 0 339 1 346 257 23 12 chrX 8670237 8670408 -153929522 + GA-rich Low_complexity Low_complexity 3 175 0 2627 219 53 55 chrX 8670524 8671281 -153928649 - L1ME1 LINE L1 -4 6162 5408 449 278 97 32 chrX 8671350 8671659 -153928271 - L1MC5 LINE L1 -29 7932 7604 1580 11 0 0 chrX 8672187 8672366 -153927564 + L1PA4 LINE L1 5977 6155 0 342 0 0 0 chrX 8672402 8672440 -153927490 + (TG)n Simple_repeat Simple_repeat 2 39 0 957 202 25 15 chrX 8673950 8674148 -153925782 - MER20 DNA MER1_type -14 205 6 1089 264 82 24 chrX 8675505 8676059 -153923871 - L2 LINE L2 -22 3291 2703 826 156 17 165 chrX 8676063 8676300 -153923630 + MER20 DNA MER1_type 1 202 -17 805 294 184 24 chrX 8676300 8676712 -153923218 - L2 LINE L2 -607 2707 2230 297 305 74 68 chrX 8676722 8676912 -153923018 - LTR67 LTR ERVL -10 547 357 1230 272 171 8 chrX 8677184 8677659 -153922271 - L2 LINE L2 -1080 2234 1683 24 53 0 0 chrX 8677722 8677760 -153922170 + AT_rich Low_complexity Low_complexity 1 38 0 315 300 0 30 chrX 8677897 8677997 -153921933 - L1MC4 LINE L1 -1342 6700 6604 7736 177 25 4 chrX 8678551 8680054 -153919876 - L1 LINE L1 -869 5277 3743 703 261 48 0 chrX 8680106 8680313 -153919617 + MER46C DNA MER2_type 113 329 -9 2067 119 0 33 chrX 8680982 8681285 -153918645 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 8682900 8682944 -153916986 + AT_rich Low_complexity Low_complexity 1 44 0 227 241 13 57 chrX 8684160 8684318 -153915612 - L1M4c LINE L1 -3819 2563 2413 21 57 0 0 chrX 8684706 8684741 -153915189 + AT_rich Low_complexity Low_complexity 1 35 0 643 306 55 55 chrX 8684833 8685235 -153914695 - L1M4c LINE L1 -852 1891 1288 1882 162 94 110 chrX 8685242 8685743 -153914187 - L1MDa LINE L1 -6031 509 17 704 92 0 0 chrX 8686395 8686493 -153913437 - AluSc SINE Alu -211 98 1 1843 274 83 21 chrX 8686841 8687616 -153912314 - HAL1 LINE L1 -396 2111 1289 590 259 156 18 chrX 8687777 8688001 -153911929 + MLT1J2 LTR MaLR 196 450 0 399 253 113 88 chrX 8688001 8688504 -153911426 - HAL1 LINE L1 -1218 1289 774 309 304 122 33 chrX 8688624 8688805 -153911125 - HAL1 LINE L1 -1901 606 410 554 306 41 59 chrX 8689054 8689443 -153910487 - LTR16C LTR ERVL -57 434 53 212 306 116 75 chrX 8690245 8690686 -153909244 + L2 LINE L2 2814 3272 0 846 107 112 56 chrX 8690848 8691026 -153908904 + MER5A DNA MER1_type 2 189 0 907 206 40 0 chrX 8691953 8692152 -153907778 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 8693536 8693564 -153906366 + (TCC)n Simple_repeat Simple_repeat 3 31 0 583 298 30 0 chrX 8693933 8694064 -153905866 + MER91C DNA MER1_type 1 135 -5 344 296 102 9 chrX 8694101 8694209 -153905721 - L2 LINE L2 0 3313 3196 186 324 152 19 chrX 8694702 8694807 -153905123 + L2 LINE L2 3145 3263 -9 1812 132 88 15 chrX 8696905 8697246 -153902684 - THE1C LTR MaLR -9 366 1 899 290 57 44 chrX 8697836 8698294 -153901636 - LTR16B LTR ERVL 0 464 1 3139 195 70 17 chrX 8698457 8699238 -153900692 - MER99 DNA DNA 0 828 6 750 208 3 15 chrX 8699624 8699932 -153899998 - MLT1A2 LTR MaLR 0 374 1 3234 139 17 7 chrX 8700301 8700875 -153899055 - L1MB7 LINE L1 -23 6161 5582 525 247 110 26 chrX 8700945 8701099 -153898831 - MER5B DNA MER1_type -8 170 4 580 306 52 6 chrX 8701392 8701565 -153898365 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 8702353 8702436 -153897494 - L2 LINE L2 -84 3229 3151 482 225 220 17 chrX 8702681 8702854 -153897076 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 8702918 8702959 -153896971 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 199 264 194 0 chrX 8702960 8703032 -153896898 - L2 LINE L2 -14 3299 3214 184 297 47 16 chrX 8703091 8703155 -153896775 - L2 LINE L2 -66 3206 3141 1877 153 7 0 chrX 8703464 8703739 -153896191 + AluJo SINE Alu 20 296 -16 285 318 77 12 chrX 8704804 8704974 -153894956 + L2 LINE L2 1668 1848 -1466 805 281 116 44 chrX 8705617 8705915 -153894015 + L2 LINE L2 1671 2007 -1307 1944 152 7 13 chrX 8705915 8706250 -153893680 + AluSx SINE Alu 1 312 0 805 281 116 44 chrX 8706250 8706357 -153893573 + L2 LINE L2 2007 2105 -1209 1411 169 4 4 chrX 8706374 8706635 -153893295 - L1MB5 LINE L1 0 6174 5914 330 273 13 0 chrX 8706675 8706752 -153893178 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 8706778 8706806 -153893124 + (CA)n Simple_repeat Simple_repeat 2 29 0 808 151 78 0 chrX 8706886 8707065 -153892865 - L1MB5 LINE L1 -277 5907 5715 1447 227 127 55 chrX 8707066 8707578 -153892352 + L2 LINE L2 2103 2651 -663 1148 187 9 5 chrX 8708233 8708447 -153891483 + MER20 DNA MER1_type 1 215 -4 416 255 39 39 chrX 8709126 8709279 -153890651 - MIR3 SINE MIR -15 193 41 198 0 0 0 chrX 8710644 8710666 -153889264 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 8711185 8711220 -153888710 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 8711640 8711720 -153888210 + L2 LINE L2 3231 3307 -6 193 373 124 17 chrX 8711818 8711995 -153887935 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 8712187 8712214 -153887716 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 8712402 8712478 -153887452 + L2 LINE L2 2559 2636 -678 7468 32 4 0 chrX 8712723 8714232 -153885698 - L1PA5 LINE L1 -4 6150 4639 26 113 0 0 chrX 8714311 8714435 -153885495 + AT_rich Low_complexity Low_complexity 1 124 0 670 285 84 45 chrX 8715971 8716150 -153883780 + L2 LINE L2 2620 2791 -522 3569 121 21 8 chrX 8716150 8716670 -153883260 - MER1A DNA MER1_type 0 527 1 670 285 84 45 chrX 8716670 8717068 -153882862 + L2 LINE L2 2791 3216 -97 1080 199 14 5 chrX 8717234 8717450 -153882480 - MER58A DNA MER1_type 0 224 7 232 295 0 0 chrX 8718231 8718292 -153881638 - MIR SINE MIR -110 152 92 519 260 78 26 chrX 8718442 8718596 -153881334 + MER5B DNA MER1_type 17 178 0 1320 180 9 0 chrX 8718604 8718826 -153881104 - MER58A DNA MER1_type 0 224 1 353 343 108 5 chrX 8719032 8719245 -153880685 + MIR SINE MIR 12 246 -16 685 281 112 42 chrX 8719869 8720395 -153879535 + MLT1L LTR MaLR 5 567 -48 281 284 136 11 chrX 8720828 8720916 -153879014 - L2 LINE L2 0 3272 3174 1036 182 5 0 chrX 8720942 8721145 -153878785 + MER3 DNA MER1_type 6 209 0 672 292 27 0 chrX 8722609 8722794 -153877136 + MIR SINE MIR 15 204 -58 222 365 48 7 chrX 8723108 8723253 -153876677 - MIR SINE MIR -66 196 46 233 57 29 0 chrX 8723501 8723536 -153876394 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 22431 164 17 13 chrX 8724682 8731206 -153868724 + L1PA11 LINE L1 1 7610 -2 308 272 70 63 chrX 8731695 8731926 -153868004 + MIR3 SINE MIR 4 233 -29 1816 181 7 7 chrX 8732421 8732720 -153867210 - AluJb SINE Alu -13 299 1 1976 171 131 11 chrX 8733149 8733600 -153866330 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chrX 8733991 8734012 -153865918 + AT_rich Low_complexity Low_complexity 1 21 0 402 135 0 0 chrX 8734012 8734086 -153865844 - L1MA4 LINE L1 0 6300 6227 943 53 15 0 chrX 8734086 8734217 -153865713 + L1MA4 LINE L1 6128 6260 -40 181 179 0 51 chrX 8734561 8734600 -153865330 - L3 LINE CR1 -250 1327 1291 261 0 0 0 chrX 8734691 8734720 -153865210 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 189 147 0 0 chrX 8735132 8735166 -153864764 + (TA)n Simple_repeat Simple_repeat 1 34 0 231 319 121 33 chrX 8735765 8735856 -153864074 + L2 LINE L2 3174 3272 0 1183 198 28 0 chrX 8736573 8736821 -153863109 - L1MB7 LINE L1 -16 6168 5914 2348 144 8 0 chrX 8736895 8737257 -153862673 - MLT1A1 LTR MaLR 0 365 1 1725 208 46 0 chrX 8737263 8737652 -153862278 + MLT1E2 LTR MaLR 219 625 -1 181 269 154 0 chrX 8737920 8737998 -153861932 + L2 LINE L2 1613 1702 -1612 807 10 0 10 chrX 8738006 8738108 -153861822 - L1PA4 LINE L1 -163 5992 5892 1357 48 0 0 chrX 8738108 8738269 -153861661 + L1PA4 LINE L1 5987 6153 -2 215 77 0 26 chrX 8738663 8738702 -153861228 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 12760 27 2 2 chrX 8738702 8741043 -153858887 - L1PA3 LINE L1 -24 6131 3789 1127 174 33 5 chrX 8741161 8741374 -153858556 + MER20 DNA MER1_type 1 219 0 195 100 0 0 chrX 8741475 8741505 -153858425 + (GGGAGA)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chrX 8741972 8741993 -153857937 + AT_rich Low_complexity Low_complexity 1 21 0 355 328 41 62 chrX 8743928 8744123 -153855807 - MIR3 SINE MIR -4 204 14 1154 161 22 40 chrX 8744456 8744679 -153855251 - MER20 DNA MER1_type 0 219 1 3921 16 0 0 chrX 8745381 8745829 -153854101 - L1PA2 LINE L1 -2 6153 5706 902 53 0 0 chrX 8745840 8745953 -153853977 - L1PA10 LINE L1 0 6168 6056 1171 261 35 61 chrX 8746160 8746701 -153853229 - L1ME3 LINE L1 -8 6154 5628 186 356 96 0 chrX 8747010 8747114 -153852816 + MIR SINE MIR 11 124 -138 7757 20 0 0 chrX 8747538 8748843 -153851087 - L1PA3 LINE L1 0 6155 4851 1359 146 47 29 chrX 8749405 8749717 -153850213 - L1MA4 LINE L1 -9 6294 6004 40 49 0 0 chrX 8749864 8749925 -153850005 + AT_rich Low_complexity Low_complexity 1 61 0 1094 193 9 14 chrX 8751438 8751656 -153848274 + MER20 DNA MER1_type 3 219 0 333 349 40 7 chrX 8751861 8752010 -153847920 + MIR SINE MIR 95 248 -14 2234 141 88 13 chrX 8752795 8753193 -153846737 - MSTA LTR MaLR 0 428 1 200 200 0 0 chrX 8754343 8754378 -153845552 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 186 270 0 0 chrX 8754401 8754475 -153845455 + (TA)n Simple_repeat Simple_repeat 1 74 0 2289 123 17 57 chrX 8754603 8755008 -153844922 + MLT1B LTR MaLR 1 389 -1 475 267 86 28 chrX 8755083 8755348 -153844582 + L1ME LINE L1 5521 5809 -361 243 0 0 0 chrX 8755421 8755448 -153844482 + (TG)n Simple_repeat Simple_repeat 2 28 0 330 252 108 7 chrX 8755948 8756087 -153843843 - MER103 DNA DNA -6 160 8 204 135 27 0 chrX 8756272 8756309 -153843621 + (CAA)n Simple_repeat Simple_repeat 2 39 0 280 276 60 141 chrX 8756684 8756803 -153843127 + MER91B DNA MER1_type 8 106 -84 2243 106 0 13 chrX 8756803 8757115 -153842815 - AluSc SINE Alu -1 308 1 280 276 60 141 chrX 8757115 8757194 -153842736 + MER91B DNA MER1_type 106 190 0 256 285 200 15 chrX 8757236 8757366 -153842564 + MIR3 SINE MIR 17 170 -38 * 638 310 67 65 chrX 8757365 8757736 -153842194 + L2 LINE L2 2896 3267 -5 755 29 59 0 chrX 8757777 8757879 -153842051 - L1PA13 LINE L1 -4 6159 6052 766 284 36 4 chrX 8758537 8758762 -153841168 + MIR SINE MIR 15 246 -16 2033 132 7 0 chrX 8759512 8759800 -153840130 - AluSx SINE Alu -22 290 1 452 18 18 0 chrX 8759849 8759906 -153840024 + (TG)n Simple_repeat Simple_repeat 2 59 0 844 219 0 12 chrX 8760785 8760949 -153838981 + MER5A DNA MER1_type 6 167 -22 224 261 22 54 chrX 8761987 8762079 -153837851 + MIR SINE MIR 63 151 -111 384 40 0 0 chrX 8762339 8762389 -153837541 + (TG)n Simple_repeat Simple_repeat 2 51 0 446 266 17 35 chrX 8764238 8764411 -153835519 + MER117 DNA MER1_type 1 170 -27 26462 41 4 2 chrX 8764588 8768682 -153831248 + L1PA3 LINE L1 2091 6191 0 369 355 108 0 chrX 8768727 8768930 -153831000 + HAL1 LINE L1 359 583 -1924 7159 50 5 0 chrX 8769083 8770136 -153829794 + L1PA5 LINE L1 5099 6152 -2 22 35 0 0 chrX 8770150 8770179 -153829751 + AT_rich Low_complexity Low_complexity 1 29 0 220 311 0 0 chrX 8771948 8772009 -153827921 + CT-rich Low_complexity Low_complexity 4 64 0 392 324 171 24 chrX 8772220 8772628 -153827302 + HAL1 LINE L1 881 1305 -1202 285 200 12 50 chrX 8773020 8773100 -153826830 + L2 LINE L2 3231 3307 -6 192 373 124 17 chrX 8773198 8773375 -153826555 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 8773567 8773594 -153826336 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 8773782 8773858 -153826072 + L2 LINE L2 2559 2636 -678 1341 42 0 0 chrX 8774103 8774268 -153825662 - L1PA4 LINE L1 -4 6151 5987 839 10 0 0 chrX 8774268 8774364 -153825566 + L1PA4 LINE L1 5897 5992 -163 183 269 154 0 chrX 8774372 8774450 -153825480 - L2 LINE L2 -1612 1702 1613 1825 197 51 8 chrX 8774718 8775108 -153824822 - MLT1E2 LTR MaLR -1 625 219 2029 165 11 11 chrX 8775114 8775477 -153824453 + MLT1A1 LTR MaLR 1 363 -2 217 293 98 49 chrX 8775977 8776141 -153823789 + MIR SINE MIR 13 184 -78 21 36 0 0 chrX 8776575 8776603 -153823327 + AT_rich Low_complexity Low_complexity 1 28 0 306 300 138 36 chrX 8779485 8779732 -153820198 - L1 LINE L1 -2860 3286 3015 557 251 99 70 chrX 8780656 8780999 -153818931 + MLT1L LTR MaLR 5 357 -258 6432 34 7 2 chrX 8781318 8782377 -153817553 + L1P1 LINE L1 4618 5684 -471 191 36 36 0 chrX 8783602 8783630 -153816300 + (TCC)n Simple_repeat Simple_repeat 3 31 0 463 292 69 0 chrX 8784000 8784130 -153815800 + MER91C DNA MER1_type 1 139 -1 4277 69 21 58 chrX 8784386 8785054 -153814876 - L1P LINE L1 -865 5281 4639 25 105 0 0 chrX 8785133 8785228 -153814702 + AT_rich Low_complexity Low_complexity 1 95 0 816 266 133 0 chrX 8786290 8786516 -153813414 - LTR33 LTR ERVL -23 498 243 804 158 6 32 chrX 8788685 8788843 -153811087 + L1PA6 LINE L1 5852 6005 -149 286 238 24 24 chrX 8790280 8790406 -153809524 + T-rich Low_complexity Low_complexity 3 128 0 6861 139 13 16 chrX 8790599 8792593 -153807337 + L1PA11 LINE L1 4186 6171 -3 299 272 70 63 chrX 8793083 8793314 -153806616 + MIR3 SINE MIR 4 233 -29 1789 181 7 7 chrX 8793809 8794108 -153805822 - AluJb SINE Alu -13 299 1 1981 171 131 11 chrX 8794538 8794989 -153804941 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chrX 8795380 8795401 -153804529 + AT_rich Low_complexity Low_complexity 1 21 0 414 135 0 0 chrX 8795401 8795475 -153804455 - L1MA4 LINE L1 0 6300 6227 973 61 15 0 chrX 8795475 8795606 -153804324 + L1MA4 LINE L1 6128 6260 -40 181 179 0 51 chrX 8795949 8795988 -153803942 - L3 LINE CR1 -250 1327 1291 261 0 0 0 chrX 8796079 8796108 -153803822 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 189 147 0 0 chrX 8796520 8796554 -153803376 + (TA)n Simple_repeat Simple_repeat 1 34 0 236 319 121 33 chrX 8797153 8797244 -153802686 + L2 LINE L2 3174 3272 0 1202 198 28 0 chrX 8797961 8798209 -153801721 - L1MB7 LINE L1 -16 6168 5914 2350 144 8 0 chrX 8798283 8798645 -153801285 - MLT1A1 LTR MaLR 0 365 1 1855 198 51 5 chrX 8798651 8799040 -153800890 + MLT1E2 LTR MaLR 219 625 -1 789 39 0 10 chrX 8799394 8799496 -153800434 - L1PA4 LINE L1 -163 5992 5892 1356 48 0 0 chrX 8799496 8799657 -153800273 + L1PA4 LINE L1 5987 6153 -2 24 0 0 0 chrX 8799969 8799993 -153799937 + AT_rich Low_complexity Low_complexity 1 24 0 427 257 104 64 chrX 8800383 8800632 -153799298 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 8800704 8800785 -153799145 + AT_rich Low_complexity Low_complexity 1 81 0 1021 211 0 0 chrX 8800963 8801171 -153798759 + MER3 DNA MER1_type 1 208 -1 717 289 84 52 chrX 8801588 8801945 -153797985 + L1ME LINE L1 2943 3328 -2818 2311 112 0 0 chrX 8801945 8802257 -153797673 + AluSx SINE Alu 1 312 0 717 289 84 52 chrX 8802257 8802509 -153797421 + L1ME LINE L1 3328 3571 -2575 1801 172 0 6 chrX 8802680 8802994 -153796936 + AluJo SINE Alu 1 312 0 886 208 26 40 chrX 8803151 8803377 -153796553 + L1ME LINE L1 5320 5542 -624 2516 220 55 32 chrX 8803479 8804165 -153795765 + L1ME1 LINE L1 5461 6162 -4 391 323 94 12 chrX 8804159 8804661 -153795269 + L1M4 LINE L1 2260 2802 -3344 * 22 0 0 0 chrX 8804686 8804708 -153795222 + AT_rich Low_complexity Low_complexity 1 22 0 274 269 206 50 chrX 8804764 8805046 -153794884 + HAL1 LINE L1 28 353 -2154 * 14565 23 0 0 chrX 8805013 8806739 -153793191 + L1P LINE L1 2903 4628 -1518 532 258 112 83 chrX 8806875 8807294 -153792636 - L1ME4a LINE L1 -81 6040 5600 2217 108 3 0 chrX 8807294 8807589 -153792341 - AluSc SINE Alu -13 296 1 532 258 112 83 chrX 8807589 8807723 -153792207 - L1ME4a LINE L1 -521 5600 5471 4953 157 77 35 chrX 8808388 8809416 -153790514 + MER11C LTR ERVK 1 1071 0 437 271 68 15 chrX 8809440 8809573 -153790357 + MIR SINE MIR 2 141 -121 371 330 42 91 chrX 8810013 8810180 -153789750 + L2 LINE L2 2325 2499 -815 2035 146 0 0 chrX 8810180 8810475 -153789455 - AluSx SINE Alu -12 300 6 371 330 42 91 chrX 8810475 8810876 -153789054 + L2 LINE L2 2499 2865 -449 205 225 25 0 chrX 8811710 8811750 -153788180 + L2 LINE L2 3216 3256 -16 215 322 11 11 chrX 8813576 8813666 -153786264 + CT-rich Low_complexity Low_complexity 1 90 0 362 241 60 0 chrX 8813730 8813813 -153786117 + MIR SINE MIR 136 223 -39 188 200 40 40 chrX 8813913 8813963 -153785967 + L3b LINE CR1 1277 1326 -257 21 0 0 0 chrX 8814244 8814265 -153785665 + AT_rich Low_complexity Low_complexity 1 21 0 240 315 102 35 chrX 8814422 8814619 -153785311 + MIR SINE MIR 13 222 -40 21 36 0 0 chrX 8815018 8815046 -153784884 + AT_rich Low_complexity Low_complexity 1 28 0 717 143 24 16 chrX 8815339 8815465 -153784465 + L1PB3 LINE L1 6018 6144 -10 409 238 91 75 chrX 8815478 8815664 -153784266 - L1ME1 LINE L1 -134 6033 5846 1553 157 14 7 chrX 8816461 8816747 -153783183 - L1MB3 LINE L1 -2 6181 5894 1549 258 131 52 chrX 8816978 8817911 -153782019 - HAL1 LINE L1 -1143 1364 359 204 83 56 0 chrX 8817956 8817992 -153781938 + T-rich Low_complexity Low_complexity 2 39 0 8123 86 4 2 chrX 8817995 8819914 -153780016 - L1PA3 LINE L1 -3 6152 4231 528 319 26 35 chrX 8821030 8821262 -153778668 + MIR SINE MIR 12 241 -21 255 296 10 20 chrX 8821310 8821408 -153778522 + (TAG)n Simple_repeat Simple_repeat 2 98 0 366 23 0 0 chrX 8821470 8821513 -153778417 + (GA)n Simple_repeat Simple_repeat 1 43 0 266 256 26 0 chrX 8822218 8822296 -153777634 - MIR3 SINE MIR -5 203 124 1512 115 93 0 chrX 8822704 8822958 -153776972 + AluSx SINE Alu 38 312 0 427 257 104 64 chrX 8823372 8823621 -153776309 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 8823693 8823774 -153776156 + AT_rich Low_complexity Low_complexity 1 81 0 240 276 23 0 chrX 8824450 8824537 -153775393 - L1MCc LINE L1 -6316 107 19 790 251 12 0 chrX 8824745 8824916 -153775014 + MIR SINE MIR 79 251 -11 3511 102 4 25 chrX 8825160 8825680 -153774250 + MER41B LTR ERV1 1 509 -126 1336 150 47 29 chrX 8825992 8826304 -153773626 + L1MA4 LINE L1 6004 6294 -9 1081 142 18 18 chrX 8826867 8827085 -153772845 + L1P LINE L1 4851 5068 -1078 240 186 12 23 chrX 8827332 8827418 -153772512 + GA-rich Low_complexity Low_complexity 1 85 0 30797 78 8 163 chrX 8829046 8829424 -153770506 - L1PA16 LINE L1 -1 6165 5730 4800 43 7 0 chrX 8829424 8830007 -153769923 - LTR14C LTR ERVK 0 587 1 30797 78 8 163 chrX 8830007 8836914 -153763016 - L1PA16 LINE L1 -436 5730 12 23 54 0 0 chrX 8836948 8836985 -153762945 + AT_rich Low_complexity Low_complexity 1 37 0 294 264 139 21 chrX 8837056 8837200 -153762730 - MIR SINE MIR -41 221 61 894 294 138 12 chrX 8837801 8838288 -153761642 - HAL1 LINE L1 0 2507 1960 3248 204 22 9 chrX 8838365 8839005 -153760925 - MLT1E1 LTR MaLR -10 623 3 2920 252 129 83 chrX 8839028 8839579 -153760351 - HAL1 LINE L1 -678 1829 1305 2249 78 7 3 chrX 8839579 8839872 -153760058 - AluY SINE Alu -17 294 1 2920 252 129 83 chrX 8839872 8839992 -153759938 - HAL1 LINE L1 -1202 1305 1192 2079 126 7 0 chrX 8839992 8840293 -153759637 - AluSx SINE Alu -7 305 3 2920 252 129 83 chrX 8840293 8841361 -153758569 - HAL1 LINE L1 -1315 1192 9 386 324 90 33 chrX 8841368 8841701 -153758229 + L1M4 LINE L1 4581 4932 -1214 202 250 0 0 chrX 8841903 8841943 -153757987 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 1482 253 75 36 chrX 8842268 8842777 -153757153 - MLT1G1 LTR MaLR -5 544 1 9001 218 13 8 chrX 8842809 8845410 -153754520 + L1PA16 LINE L1 3146 5791 -375 4889 38 5 0 chrX 8845410 8845994 -153753936 + LTR14C LTR ERVK 1 587 0 9001 218 13 8 chrX 8845994 8846367 -153753563 + L1PA16 LINE L1 5791 6160 -6 216 0 0 0 chrX 8846822 8846846 -153753084 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 432 275 53 23 chrX 8847415 8847546 -153752384 - MER5A DNA MER1_type -29 160 26 667 196 176 0 chrX 8847615 8847768 -153752162 - MIR SINE MIR -60 202 23 27 29 0 0 chrX 8848563 8848597 -153751333 + AT_rich Low_complexity Low_complexity 1 34 0 1607 160 190 11 chrX 8850184 8850547 -153749383 - MSTA LTR MaLR 0 428 1 269 248 143 56 chrX 8851120 8851281 -153748649 - MER5B DNA MER1_type -2 176 2 1241 164 28 0 chrX 8852164 8852377 -153747553 + MER20 DNA MER1_type 1 219 0 333 316 165 0 chrX 8852628 8852761 -153747169 + L2 LINE L2 3117 3271 -1 521 246 47 15 chrX 8853253 8853503 -153746427 + LTR16A LTR ERVL 144 443 -7 472 244 67 107 chrX 8853990 8854260 -153745670 + MLT1J2 LTR MaLR 68 326 -124 363 78 0 0 chrX 8855194 8855245 -153744685 + (TG)n Simple_repeat Simple_repeat 2 52 0 14500 161 27 18 chrX 8855295 8859398 -153740532 - L1MA3 LINE L1 0 7724 3617 5767 184 41 11 chrX 8859399 8860560 -153739370 - L1MA3 LINE L1 -6358 1207 12 1489 186 20 20 chrX 8860566 8860964 -153738966 - L1 LINE L1 -2667 4898 4501 7777 147 54 3 chrX 8860975 8862256 -153737674 - L1 LINE L1 -6204 1361 16 2433 233 64 90 chrX 8862258 8863182 -153736748 - MER69 DNA AcHobo -1613 913 14 338 261 24 68 chrX 8863232 8863439 -153736491 - L1MC5 LINE L1 -44 7917 7720 23 0 0 0 chrX 8864052 8864075 -153735855 + AT_rich Low_complexity Low_complexity 1 23 0 257 386 40 0 chrX 8864371 8864472 -153735458 - L2 LINE L2 -65 3207 3103 366 337 33 37 chrX 8864531 8864831 -153735099 - L2 LINE L2 -549 2765 2467 187 133 44 0 chrX 8865578 8865623 -153734307 + (TA)n Simple_repeat Simple_repeat 2 48 0 190 259 56 19 chrX 8865730 8865784 -153734146 - L2 LINE L2 -2 3270 3215 6028 26 1 0 chrX 8865971 8866673 -153733257 + L1PA4 LINE L1 5448 6150 -5 494 312 94 8 chrX 8867914 8868148 -153731782 - MLT1I LTR MaLR -4 405 152 258 273 149 13 chrX 8868156 8868310 -153731620 - MLT1I LTR MaLR -223 186 12 4398 104 3 20 chrX 8868317 8868963 -153730967 - MER41B LTR ERV1 0 635 1 783 251 12 0 chrX 8869207 8869378 -153730552 - MIR SINE MIR -11 251 79 699 304 28 33 chrX 8869583 8869974 -153729956 + L1MCc LINE L1 22 410 -6013 2775 127 29 0 chrX 8869994 8870410 -153729520 - MSTA LTR MaLR 0 428 1 2117 206 113 71 chrX 8870580 8870817 -153729113 + L1ME2 LINE L1 5277 5502 -662 727 150 8 31 chrX 8870817 8870944 -153728986 + FLAM_C SINE Alu 1 124 -9 2117 206 113 71 chrX 8870944 8871552 -153728378 + L1ME2 LINE L1 5502 6158 -6 536 278 159 0 chrX 8872127 8872278 -153727652 - MER5A DNA MER1_type -6 183 9 241 255 0 0 chrX 8873848 8873895 -153726035 + (CAT)n Simple_repeat Simple_repeat 2 48 0 231 274 24 0 chrX 8873942 8874026 -153725904 + L1ME LINE L1 5576 5661 -460 256 228 0 25 chrX 8874079 8874158 -153725772 + L1M4 LINE L1 4584 4660 -1486 320 260 65 0 chrX 8874210 8874287 -153725643 - L2 LINE L2 -4 3309 3228 34 72 0 0 chrX 8874320 8874389 -153725541 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chrX 8874822 8874843 -153725087 + AT_rich Low_complexity Low_complexity 1 21 0 465 98 73 0 chrX 8874880 8874962 -153724968 - L1MC1 LINE L1 0 6333 6246 297 304 29 0 chrX 8875105 8875207 -153724723 - MLT1L LTR MaLR -15 600 496 850 256 60 38 chrX 8875241 8875588 -153724342 - MLT1L LTR MaLR -224 391 37 203 241 133 12 chrX 8875649 8875732 -153724198 + MIR SINE MIR 120 212 -50 812 192 99 0 chrX 8875897 8876069 -153723861 - MER5A DNA MER1_type 0 189 1 1814 139 0 23 chrX 8877384 8877508 -153722422 - L1PA16 LINE L1 -5 6161 6036 2054 106 70 25 chrX 8877508 8877867 -153722063 + THE1C LTR MaLR 1 375 0 1814 139 0 23 chrX 8877867 8878044 -153721886 - L1PA16 LINE L1 -130 6036 5867 527 347 34 5 chrX 8878480 8878858 -153721072 - L1ME3A LINE L1 -286 5884 5496 2898 174 5 9 chrX 8879261 8879817 -153720113 + L1MB4 LINE L1 5625 6178 -2 209 214 0 0 chrX 8879865 8879907 -153720023 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 314 259 63 28 chrX 8879915 8880058 -153719872 + MLT1K LTR MaLR 432 579 -9 381 43 0 0 chrX 8880196 8880243 -153719687 + (TG)n Simple_repeat Simple_repeat 2 48 0 204 289 0 0 chrX 8880673 8880718 -153719212 + polypurine Low_complexity Low_complexity 1 45 0 22 0 0 0 chrX 8880978 8881000 -153718930 + AT_rich Low_complexity Low_complexity 1 22 0 2867 156 34 6 chrX 8882493 8882966 -153716964 + MER66B LTR ERV1 1 486 0 224 308 242 6 chrX 8883087 8883269 -153716661 - MIR SINE MIR -37 225 1 21 0 0 0 chrX 8883545 8883566 -153716364 + AT_rich Low_complexity Low_complexity 1 21 0 340 337 63 19 chrX 8884577 8884782 -153715148 - L1MC4a LINE L1 -1888 5920 5707 261 256 58 39 chrX 8884784 8884940 -153714990 - L1MC4a LINE L1 -2074 5734 5576 5298 174 39 57 chrX 8884941 8885481 -153714449 + L1MC3 LINE L1 6545 7093 -692 189 74 0 0 chrX 8885481 8885508 -153714422 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 5298 174 39 57 chrX 8885508 8886223 -153713707 + L1MC3 LINE L1 7093 7777 -8 332 259 26 9 chrX 8886609 8886725 -153713205 + L1M4 LINE L1 4731 4848 -1298 234 156 0 0 chrX 8886735 8886780 -153713150 + (CA)n Simple_repeat Simple_repeat 2 46 0 245 301 75 0 chrX 8887106 8887199 -153712731 - MIR SINE MIR -7 255 156 1021 276 31 29 chrX 8887349 8887782 -153712148 + L1MC4 LINE L1 6484 7016 -877 615 14 0 0 chrX 8889423 8889495 -153710435 + (TC)n Simple_repeat Simple_repeat 1 72 0 457 311 164 15 chrX 8889521 8889923 -153710007 + LTR33 LTR ERVL 35 496 -25 2868 6 0 0 chrX 8889953 8890264 -153709666 + AluYa5 SINE Alu 1 311 0 1116 261 74 30 chrX 8890502 8890932 -153708998 + LTR16A LTR ERVL 2 450 0 308 148 16 0 chrX 8893006 8893067 -153706863 + GA-rich Low_complexity Low_complexity 3 64 0 533 64 13 0 chrX 8893801 8893879 -153706051 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 36 0 0 0 chrX 8894106 8894142 -153705788 + AT_rich Low_complexity Low_complexity 1 36 0 992 231 9 18 chrX 8894701 8894926 -153705004 - MER58A DNA MER1_type 0 224 2 255 61 0 0 chrX 8895164 8895197 -153704733 + (A)n Simple_repeat Simple_repeat 1 33 0 306 0 0 0 chrX 8896975 8897009 -153702921 + (CA)n Simple_repeat Simple_repeat 2 35 0 198 347 31 41 chrX 8897120 8897218 -153702712 - MER5A DNA MER1_type 0 189 93 364 250 9 45 chrX 8897237 8897349 -153702581 + MER5A DNA MER1_type 47 154 -35 2189 114 0 13 chrX 8897440 8897782 -153702148 - AluSq SINE Alu 0 338 1 27 0 0 0 chrX 8897935 8897962 -153701968 + AT_rich Low_complexity Low_complexity 1 27 0 315 231 150 54 chrX 8898132 8898392 -153701538 - L1MC4 LINE L1 -17 8025 7741 300 267 42 33 chrX 8898443 8898563 -153701367 - L1MC4 LINE L1 -283 7759 7639 327 135 19 0 chrX 8898563 8898615 -153701315 - MLT1E1 LTR MaLR -601 53 1 1647 221 46 7 chrX 8898631 8899092 -153700838 - L1MEc LINE L1 -3905 2491 2013 5662 82 7 4 chrX 8899099 8899916 -153700014 - L1PA14 LINE L1 0 6161 5342 4786 168 8 4 chrX 8899917 8900848 -153699082 + L1PA14 LINE L1 4397 5330 -816 2018 260 57 36 chrX 8900856 8900989 -153698941 - L1MEc LINE L1 -4385 2011 1882 2177 81 7 7 chrX 8900989 8901285 -153698645 - L1PA7 LINE L1 -2 6152 5857 2018 260 57 36 chrX 8901285 8901575 -153698355 - L1MEc LINE L1 -4514 1882 1600 189 74 0 0 chrX 8901575 8901602 -153698328 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2018 260 57 36 chrX 8901602 8902174 -153697756 - L1MEc LINE L1 -4796 1600 994 2270 265 45 14 chrX 8902183 8902825 -153697105 - L1MEc LINE L1 -5699 697 36 323 257 140 15 chrX 8903746 8903882 -153696048 + MIR SINE MIR 4 156 -106 1768 202 42 18 chrX 8903888 8904339 -153695591 + LTR37B LTR ERV1 6 467 -1 263 277 69 0 chrX 8904340 8904441 -153695489 + MIR SINE MIR 155 262 0 2207 108 7 0 chrX 8904907 8905204 -153694726 - AluSx SINE Alu -13 299 1 301 295 32 0 chrX 8905938 8906033 -153693897 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 300 214 0 0 chrX 8906161 8906217 -153693713 + MER5A DNA MER1_type 9 64 -125 397 237 79 0 chrX 8906307 8906421 -153693509 + MER3 DNA MER1_type 46 168 -41 1336 179 179 3 chrX 8906426 8906756 -153693174 + MER3 DNA MER1_type 2236 2623 0 583 187 32 8 chrX 8906782 8906905 -153693025 - MER5B DNA MER1_type -50 128 3 265 216 27 54 chrX 8907185 8907259 -153692671 - MER5A DNA MER1_type -1 188 117 277 179 357 0 chrX 8907281 8907365 -153692565 - MER81 DNA DNA 0 114 1 197 169 92 62 chrX 8907366 8907431 -153692499 + MER5A DNA MER1_type 122 188 -1 521 245 13 14 chrX 8907685 8907834 -153692096 + MIR SINE MIR 17 162 -67 2392 163 2 0 chrX 8907871 8908264 -153691666 + L1MC3 LINE L1 7384 7777 -8 329 258 30 90 chrX 8908505 8908672 -153691258 + L2 LINE L2 3119 3275 -38 27 87 0 0 chrX 8909084 8909153 -153690777 + AT_rich Low_complexity Low_complexity 1 69 0 1417 171 97 74 chrX 8909221 8909601 -153690329 - MLT1B LTR MaLR 0 390 2 1086 197 61 9 chrX 8909692 8909905 -153690025 + MER58A DNA MER1_type 1 224 0 243 300 70 46 chrX 8909927 8910082 -153689848 - MIR SINE MIR -60 148 20 292 321 0 0 chrX 8910925 8911009 -153688921 + MLT1K LTR MaLR 159 242 -346 379 258 181 13 chrX 8911063 8911218 -153688712 + MLT1K LTR MaLR 408 588 0 2174 104 0 20 chrX 8911535 8911833 -153688097 - AluSx SINE Alu -20 292 1 423 293 90 48 chrX 8914036 8914240 -153685690 + L1MC4a LINE L1 3950 4173 -1973 2390 87 0 37 chrX 8914240 8914563 -153685367 + AluSq SINE Alu 1 311 -2 423 293 90 48 chrX 8914563 8914669 -153685261 + L1MC4a LINE L1 4173 4273 -1873 2478 153 51 36 chrX 8914724 8915174 -153684756 - MSTB2 LTR MaLR 0 457 1 1087 275 35 52 chrX 8915448 8915846 -153684084 + L1MC4a LINE L1 5461 5645 -529 269 306 78 11 chrX 8916355 8916535 -153683395 + L2 LINE L2 2189 2380 -934 1062 221 9 27 chrX 8917326 8917548 -153682382 - MER20 DNA MER1_type -1 218 1 2144 128 0 0 chrX 8917937 8918227 -153681703 - AluSg SINE Alu -20 290 1 651 301 119 10 chrX 8918702 8919025 -153680905 + L2 LINE L2 2711 3069 -244 399 301 168 0 chrX 8919036 8919179 -153680751 - MER5A DNA MER1_type -5 184 18 642 216 51 81 chrX 8919201 8919437 -153680493 + L2 LINE L2 3084 3312 -1 820 284 30 30 chrX 8921960 8922263 -153677667 - LTR16A LTR ERVL -91 359 57 925 195 127 0 chrX 8922293 8922529 -153677401 - Charlie4a DNA MER1_type -169 339 74 225 0 0 0 chrX 8923019 8923044 -153676886 + (CGG)n Simple_repeat Simple_repeat 2 26 0 1640 156 32 7 chrX 8923869 8924151 -153675779 + AluJb SINE Alu 1 289 -23 393 270 119 19 chrX 8924210 8924369 -153675561 + MIR SINE MIR 35 209 -53 1100 151 98 34 chrX 8924422 8924627 -153675303 + MER20 DNA MER1_type 1 218 -1 320 232 182 20 chrX 8925049 8925148 -153674782 - MIR SINE MIR -87 175 61 263 377 70 15 chrX 8926778 8926977 -153672953 + L3 LINE CR1 243 452 -1125 242 302 194 35 chrX 8927070 8927328 -153672602 + L3 LINE CR1 948 1246 -331 226 125 0 0 chrX 8927357 8927389 -153672541 + MER58A DNA MER1_type 37 68 -39 555 169 7 110 chrX 8927438 8927574 -153672356 - MER58B DNA MER1_type 0 341 220 826 70 0 0 chrX 8927757 8927857 -153672073 - HY3 scRNA scRNA -1 100 1 495 283 92 0 chrX 8927885 8928069 -153671861 - MIR SINE MIR -48 214 14 429 211 56 0 chrX 8928263 8928353 -153671577 + MER20 DNA MER1_type 125 219 0 1790 202 83 83 chrX 8929244 8929764 -153670166 - MLT2B1 LTR ERVL 0 520 1 699 233 233 11 chrX 8930411 8930855 -153669075 - MLT1G LTR MaLR -14 576 32 527 232 90 19 chrX 8931039 8931194 -153668736 - MER5A DNA MER1_type -1 188 23 180 255 109 76 chrX 8931831 8932015 -153667915 + L2 LINE L2 3069 3258 -14 3507 56 16 70 chrX 8934842 8935326 -153664604 + L1PA7 LINE L1 5687 6144 -10 2368 88 0 3 chrX 8935392 8935687 -153664243 - AluSg SINE Alu -16 294 1 2496 116 31 6 chrX 8936267 8936621 -153663309 + THE1B LTR MaLR 1 363 -1 463 311 97 5 chrX 8936945 8937141 -153662789 + MIR SINE MIR 47 260 -2 1733 122 0 8 chrX 8937468 8937706 -153662224 - AluSq SINE Alu -51 262 27 21 0 0 0 chrX 8937887 8937908 -153662022 + AT_rich Low_complexity Low_complexity 1 21 0 1745 84 51 8 chrX 8937971 8938208 -153661722 + L1PA13 LINE L1 5903 6149 -14 1917 165 0 0 chrX 8939244 8939535 -153660395 - AluJb SINE Alu -21 291 1 2449 142 43 10 chrX 8939933 8940348 -153659582 + L1MB8 LINE L1 5731 6159 -19 2666 39 3 0 chrX 8940371 8940678 -153659252 + AluY SINE Alu 1 308 -3 880 199 21 27 chrX 8941304 8941490 -153658440 - MER5A DNA MER1_type -3 186 2 1906 162 143 19 chrX 8941971 8942207 -153657723 - MLT1C LTR MaLR -3 464 259 273 89 0 0 chrX 8942207 8942252 -153657678 + (TG)n Simple_repeat Simple_repeat 1 45 0 1906 162 143 19 chrX 8942252 8942428 -153657502 - MLT1C LTR MaLR -208 259 1 2343 147 28 0 chrX 8943081 8943436 -153656494 - MLT1A1 LTR MaLR 0 365 1 225 235 0 44 chrX 8943691 8943759 -153656171 + MIR SINE MIR 87 151 -57 688 252 13 0 chrX 8943806 8943957 -153655973 - MER45A DNA AcHobo 0 178 26 264 127 0 0 chrX 8944128 8944183 -153655747 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 345 324 9 0 chrX 8944897 8945005 -153654925 + MIR SINE MIR 37 145 -117 421 297 103 26 chrX 8945148 8945344 -153654586 - MIR SINE MIR -12 250 41 282 320 103 0 chrX 8945758 8945855 -153654075 - L2 LINE L2 -3 3269 3163 622 126 58 211 chrX 8946578 8946801 -153653129 + MER53 DNA DNA 1 189 0 287 188 25 88 chrX 8946880 8946960 -153652970 + MER81 DNA DNA 40 114 0 2148 118 3 0 chrX 8947948 8948245 -153651685 + AluSx SINE Alu 1 298 -14 28 29 0 0 chrX 8949301 8949336 -153650594 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chrX 8949679 8949722 -153650208 + AT_rich Low_complexity Low_complexity 1 43 0 556 230 99 6 chrX 8951700 8951861 -153648069 + MLT1J2 LTR MaLR 1 176 -274 1887 64 0 9 chrX 8951879 8952112 -153647818 + AluY SINE Alu 80 310 -1 489 215 35 157 chrX 8952124 8952436 -153647494 + MLT1J2 LTR MaLR 177 450 0 21 0 0 0 chrX 8952814 8952835 -153647095 + AT_rich Low_complexity Low_complexity 1 21 0 995 167 78 29 chrX 8954175 8954557 -153645373 + MLT1D LTR MaLR 2 450 -55 219 250 239 0 chrX 8954728 8954816 -153645114 - MIR SINE MIR -7 255 147 * 289 273 122 35 chrX 8954806 8954978 -153644952 - MIR SINE MIR -1 261 75 425 307 113 18 chrX 8954978 8955182 -153644748 - MIR SINE MIR -15 247 21 361 253 32 0 chrX 8957251 8957346 -153642584 + MER5A DNA MER1_type 2 99 -90 675 228 0 0 chrX 8957346 8957482 -153642448 - MER45A DNA AcHobo 0 178 43 395 174 65 11 chrX 8957504 8957596 -153642334 + MER5A DNA MER1_type 92 188 -1 216 259 0 0 chrX 8958261 8958315 -153641615 - MIR SINE MIR 0 262 209 208 222 22 0 chrX 8958765 8958810 -153641120 + (CA)n Simple_repeat Simple_repeat 2 47 0 400 156 44 44 chrX 8958811 8958991 -153640939 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 28 29 0 0 chrX 8961595 8961630 -153638300 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chrX 8962160 8962185 -153637745 + AT_rich Low_complexity Low_complexity 1 25 0 877 102 8 0 chrX 8962344 8962462 -153637468 + AluJb SINE Alu 174 292 -20 731 216 75 9 chrX 8962502 8962715 -153637215 + MER96B DNA MER1_type? 190 416 -1 1350 180 0 16 chrX 8962920 8963165 -153636765 - AluJo SINE Alu -4 308 68 299 272 22 122 chrX 8963762 8963942 -153635988 - MIR SINE MIR -98 164 3 514 244 34 28 chrX 8964475 8964651 -153635279 + MER5B DNA MER1_type 2 178 0 620 201 169 13 chrX 8964754 8964908 -153635022 + MER5A DNA MER1_type 9 186 -3 2205 89 0 0 chrX 8964943 8965213 -153634717 + AluSg SINE Alu 36 305 -5 3659 30 0 2 chrX 8965479 8965915 -153634015 - L1PA4 LINE L1 -3 6152 5718 180 174 23 198 chrX 8966585 8966671 -153633259 + MER5B DNA MER1_type 64 134 -44 213 39 0 0 chrX 8966950 8966976 -153632954 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2023 103 0 0 chrX 8966980 8967242 -153632688 - AluSx SINE Alu -29 283 22 940 275 0 32 chrX 8968734 8968985 -153630945 + MIR SINE MIR 18 260 -2 189 371 8 24 chrX 8969487 8969611 -153630319 + L2 LINE L2 2362 2483 -831 236 299 76 42 chrX 8969805 8969949 -153629981 + MLT1K LTR MaLR 125 273 -315 356 270 88 22 chrX 8970011 8970148 -153629782 + MLT1K LTR MaLR 401 546 -42 1821 262 135 34 chrX 8970440 8971490 -153628440 - L2 LINE L2 -1 3312 2148 2485 59 0 26 chrX 8971831 8972136 -153627794 + AluY SINE Alu 1 297 -14 294 356 32 23 chrX 8973081 8973259 -153626671 + MIR SINE MIR 17 196 -66 239 208 42 0 chrX 8973657 8973705 -153626225 + L2 LINE L2 3189 3238 -75 286 290 9 37 chrX 8975410 8975517 -153624413 - L2 LINE L2 -8 3305 3202 733 304 30 23 chrX 8976843 8977109 -153622821 - L2 LINE L2 -4 3309 3042 450 333 117 9 chrX 8977169 8977400 -153622530 - MIR SINE MIR 0 262 7 456 221 77 61 chrX 8977415 8977596 -153622334 + MER5A DNA MER1_type 4 187 -2 191 365 65 9 chrX 8978381 8978488 -153621442 - MIR3 SINE MIR -4 204 92 * 195 348 43 0 chrX 8978473 8978542 -153621388 - MIR SINE MIR -171 91 20 516 260 58 98 chrX 8978774 8979170 -153620760 - L2 LINE L2 0 3313 2934 185 218 128 64 chrX 8979557 8979635 -153620295 - L2 LINE L2 -2 3311 3229 489 272 25 4 chrX 8979660 8979871 -153620059 + MLT1J2 LTR MaLR 35 332 -118 192 307 86 36 chrX 8980003 8980143 -153619787 - MIR SINE MIR -51 211 65 181 370 14 83 chrX 8980524 8980800 -153619130 - L2 LINE L2 -12 3260 3004 249 182 0 0 chrX 8981652 8981707 -153618223 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 205 303 181 61 chrX 8982464 8982824 -153617106 - L2 LINE L2 -1218 2096 1694 323 288 97 51 chrX 8982860 8983312 -153616618 - L1ME4a LINE L1 -56 6065 5593 1170 161 5 27 chrX 8983377 8983600 -153616330 - MER20 DNA MER1_type -1 218 1 180 125 0 0 chrX 8985255 8985287 -153614643 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 185 229 0 0 chrX 8985446 8985481 -153614449 - MIR SINE MIR -111 151 117 231 324 0 0 chrX 8985891 8985965 -153613965 + L2 LINE L2 2991 3064 -208 1131 88 6 17 chrX 8986170 8986351 -153613579 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2428 54 0 13 chrX 8986356 8986654 -153613276 - AluY SINE Alu -17 294 1 259 339 8 33 chrX 8987151 8987272 -153612658 - MIR SINE MIR -81 181 64 1134 128 13 66 chrX 8987280 8987506 -153612424 + MER20 DNA MER1_type 6 219 0 452 260 0 68 chrX 8987649 8987795 -153612135 - MER91B DNA MER1_type -53 137 2 252 316 71 0 chrX 8987795 8987893 -153612037 + MIR SINE MIR 81 185 -77 783 93 0 0 chrX 8987896 8988014 -153611916 + (TA)n Simple_repeat Simple_repeat 2 119 0 302 182 0 91 chrX 8991318 8991417 -153608513 - L1MC4 LINE L1 -1339 6703 6614 228 67 0 0 chrX 8991418 8991448 -153608482 + (TA)n Simple_repeat Simple_repeat 1 30 0 324 284 42 0 chrX 8992028 8992123 -153607807 - L2 LINE L2 0 3313 3215 185 259 179 36 chrX 8992623 8992735 -153607195 + MIR SINE MIR 79 206 -56 378 254 59 104 chrX 8994152 8994287 -153605643 - L1ME4a LINE L1 -7 6114 5974 1577 195 68 0 chrX 8994287 8994579 -153605351 - AluJb SINE Alu 0 312 1 378 254 59 104 chrX 8994579 8994760 -153605170 - L1ME4a LINE L1 -147 5974 5827 982 100 0 0 chrX 8994760 8994900 -153605030 + L1PB1 LINE L1 6012 6151 0 378 254 59 104 chrX 8994900 8995090 -153604840 - L1ME4a LINE L1 -294 5827 5630 595 253 50 23 chrX 8995121 8995520 -153604410 - L1MC5 LINE L1 -241 7720 7252 389 186 271 0 chrX 8995661 8995779 -153604151 + MLT1K LTR MaLR 331 480 -108 816 148 0 37 chrX 8995916 8996051 -153603879 - FLAM_C SINE Alu -13 130 1 417 257 67 0 chrX 8996340 8996445 -153603485 - MIR SINE MIR -27 235 124 1651 156 35 0 chrX 8996518 8996806 -153603124 - MER7A DNA MER2_type -48 298 3 402 21 0 0 chrX 8996806 8996853 -153603077 + (TG)n Simple_repeat Simple_repeat 2 48 0 352 251 128 56 chrX 8997006 8997201 -153602729 + L1ME4a LINE L1 5910 6118 -3 1438 255 68 34 chrX 8998527 8999001 -153600929 - LTR16C LTR ERVL -1 490 1 1711 161 58 10 chrX 8999427 8999719 -153600211 + AluJb SINE Alu 1 306 -6 220 200 67 67 chrX 8999997 9000087 -153599843 - L2 LINE L2 -41 3231 3142 378 326 34 71 chrX 9000900 9001194 -153598736 - L2 LINE L2 0 3272 2990 384 181 0 0 chrX 9002124 9002207 -153597723 + (TA)n Simple_repeat Simple_repeat 2 84 0 376 36 107 0 chrX 9002778 9002834 -153597096 - MER58A DNA MER1_type -6 218 157 284 305 102 0 chrX 9002850 9002978 -153596952 + MER96 DNA MER1_type? 35 175 0 641 197 8 0 chrX 9002989 9003111 -153596819 - MER58A DNA MER1_type 0 159 37 869 341 118 24 chrX 9003131 9004047 -153595883 + L2 LINE L2 1612 2613 -701 23 33 0 0 chrX 9004538 9004568 -153595362 + AT_rich Low_complexity Low_complexity 1 30 0 373 309 58 14 chrX 9006046 9006185 -153593745 + MER5B DNA MER1_type 34 178 0 771 174 99 0 chrX 9006219 9006380 -153593550 + MER20 DNA MER1_type 40 216 -3 2274 107 0 0 chrX 9006741 9007039 -153592891 + AluSg SINE Alu 7 304 -6 1594 124 12 0 chrX 9007250 9007492 -153592438 + L1PA15 LINE L1 5917 6161 -4 2067 86 0 63 chrX 9007497 9007843 -153592087 + AluY SINE Alu 1 327 0 498 251 230 11 chrX 9009065 9009252 -153590678 + MIR SINE MIR 3 230 -32 332 232 62 0 chrX 9009278 9009390 -153590540 - L1ME LINE L1 -322 5799 5681 775 241 31 27 chrX 9010661 9010955 -153588975 - L1ME3A LINE L1 -222 5948 5654 915 222 6 11 chrX 9010962 9011142 -153588788 + MER5A DNA MER1_type 1 179 -10 321 309 79 8 chrX 9011168 9011294 -153588636 - L1ME3A LINE L1 -514 5656 5522 669 232 19 39 chrX 9012574 9012781 -153587149 + L1ME3 LINE L1 5957 6159 -3 540 320 69 5 chrX 9012974 9013177 -153586753 - MIR SINE MIR 0 262 47 2370 112 19 16 chrX 9013203 9013577 -153586353 - THE1C LTR MaLR 0 375 1 513 0 0 0 chrX 9013653 9013710 -153586220 + (TG)n Simple_repeat Simple_repeat 2 58 0 2185 120 27 0 chrX 9014193 9014493 -153585437 + AluSx SINE Alu 5 312 0 642 297 68 4 chrX 9014541 9014777 -153585153 + MIR SINE MIR 2 252 -10 243 273 40 30 chrX 9014924 9015023 -153584907 + Charlie2 DNA MER1_type 1 100 -2762 232 325 61 9 chrX 9015987 9016101 -153583829 + MIR3 SINE MIR 44 163 -45 188 189 54 0 chrX 9016112 9016149 -153583781 + L2 LINE L2 3265 3303 -10 262 372 126 25 chrX 9016175 9016621 -153583309 + L2 LINE L2 2175 2665 -649 913 180 62 24 chrX 9016896 9017107 -153582823 - MER20 DNA MER1_type 0 219 1 186 375 0 14 chrX 9017555 9017627 -153582303 + L2 LINE L2 3241 3311 -2 840 145 8 8 chrX 9018860 9018991 -153580939 - FLAM_C SINE Alu -2 131 1 1888 167 57 18 chrX 9020159 9020542 -153579388 + MER77 LTR ERV1 2 399 -206 1979 144 0 10 chrX 9020810 9021108 -153578822 - AluSx SINE Alu -17 295 1 2385 49 3 29 chrX 9022886 9023193 -153576737 - AluY SINE Alu -12 299 1 2148 113 3 0 chrX 9023204 9023504 -153576426 - AluSg SINE Alu -9 301 1 39 22 0 0 chrX 9024455 9024501 -153575429 + AT_rich Low_complexity Low_complexity 1 46 0 2931 148 40 4 chrX 9025035 9025555 -153574375 + L1PB4 LINE L1 5614 6152 -4 243 0 0 0 chrX 9025921 9025948 -153573982 + (CA)n Simple_repeat Simple_repeat 1 27 0 340 270 105 127 chrX 9026483 9027120 -153572810 - L1M2 LINE L1 -5760 1089 467 1550 138 5 0 chrX 9028035 9028252 -153571678 + AluSx SINE Alu 1 218 -94 7096 52 9 0 chrX 9028378 9030045 -153569885 - L1PA7 LINE L1 0 6154 4480 3208 116 0 0 chrX 9030046 9030548 -153569382 - L1PA7 LINE L1 -2415 3731 3230 7872 14 0 0 chrX 9030552 9031944 -153567986 - L1PA2 LINE L1 -2 6153 4762 6397 37 0 0 chrX 9031944 9032763 -153567167 + L1P LINE L1 1636 2454 -3692 1345 117 4 0 chrX 9032761 9032991 -153566939 - L1PA7 LINE L1 -2919 3227 2997 * 1260 95 8 104 chrX 9033372 9033613 -153566317 - L1PA15 LINE L1 -6 6159 5942 387 282 160 27 chrX 9036131 9036500 -153563430 - L2 LINE L2 -2025 1289 872 709 245 50 9 chrX 9036518 9036729 -153563201 + MIR SINE MIR 2 213 -49 609 242 12 6 chrX 9036804 9036965 -153562965 - L2 LINE L2 -2475 839 678 3251 48 22 0 chrX 9037665 9038082 -153561848 - L1PA5 LINE L1 -1 6153 5728 207 100 0 0 chrX 9039447 9039477 -153560453 + (T)n Simple_repeat Simple_repeat 1 30 0 2395 81 0 13 chrX 9041852 9042159 -153557771 - AluSc SINE Alu -6 303 1 420 222 21 14 chrX 9042274 9042418 -153557512 + (TATG)n Simple_repeat Simple_repeat 1 145 0 1075 159 29 10 chrX 9042439 9042646 -153557284 - L1MC1 LINE L1 -10 6323 6113 189 314 161 8 chrX 9043492 9043610 -153556320 + MIR SINE MIR 125 260 -2 1655 160 57 3 chrX 9043629 9043961 -153555969 - L1MA4 LINE L1 -6 6294 5945 2271 99 0 37 chrX 9044002 9044326 -153555604 + AluSx SINE Alu 1 312 0 219 36 0 0 chrX 9046156 9046184 -153553746 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1707 177 9 14 chrX 9046306 9046656 -153553274 + L1MC2 LINE L1 5589 5936 -408 * 6386 98 42 59 chrX 9046651 9047734 -153552196 - THE1C-int LTR MaLR -514 1066 2 2497 102 19 13 chrX 9047735 9048108 -153551822 - THE1C LTR MaLR 0 375 1 191 299 58 0 chrX 9048151 9048238 -153551692 - MIR SINE MIR -63 145 54 337 302 31 16 chrX 9048337 9048466 -153551464 - MIR SINE MIR -83 179 49 378 215 82 30 chrX 9049016 9049151 -153550779 + Charlie8 DNA MER1_type 56 197 -2220 980 211 33 5 chrX 9049518 9049731 -153550199 - MER20 DNA MER1_type 0 219 1 291 285 90 50 chrX 9050069 9050269 -153549661 + L3 LINE CR1 1147 1354 -223 614 197 131 27 chrX 9050417 9050600 -153549330 + MLT1F1 LTR MaLR 316 517 -50 802 176 10 137 chrX 9050617 9050924 -153549006 + L1MC3 LINE L1 7503 7770 -15 322 282 0 0 chrX 9050939 9051017 -153548913 + L3 LINE CR1 1436 1513 -64 21 36 0 0 chrX 9051429 9051457 -153548473 + AT_rich Low_complexity Low_complexity 1 28 0 248 357 83 0 chrX 9052317 9052401 -153547529 - L2 LINE L2 -49 3223 3133 1722 140 15 4 chrX 9052426 9052600 -153547330 + AluJb SINE Alu 1 181 -131 207 0 0 0 chrX 9052600 9052623 -153547307 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 1722 140 15 4 chrX 9052623 9052713 -153547217 + AluJb SINE Alu 181 268 -44 426 39 0 0 chrX 9053195 9053247 -153546683 + (TG)n Simple_repeat Simple_repeat 2 53 0 242 242 0 76 chrX 9054717 9054783 -153545147 - L2 LINE L2 -6 3266 3206 232 273 81 20 chrX 9055003 9055102 -153544828 + MLT1L LTR MaLR 145 249 -366 1681 144 24 94 chrX 9055321 9055695 -153544235 + Tigger3(Golem) DNA MER2_type 1 3028 -1 1005 211 33 9 chrX 9055865 9056078 -153543852 - MER58A DNA MER1_type -1 223 6 226 210 0 65 chrX 9057422 9057484 -153542446 - MER112 DNA MER1_type -186 74 17 207 100 0 0 chrX 9057863 9057893 -153542037 + (ATG)n Simple_repeat Simple_repeat 1 30 0 297 279 0 0 chrX 9057900 9057986 -153541944 - MIR SINE MIR -14 248 163 825 196 131 5 chrX 9059131 9059330 -153540600 - MER58A DNA MER1_type 0 224 1 474 192 20 68 chrX 9059799 9059945 -153539985 + MLT1J2 LTR MaLR 264 402 -48 542 242 150 55 chrX 9059966 9060043 -153539887 - L1MC/D LINE L1 -601 5563 5495 6278 91 2 6 chrX 9060043 9061093 -153538837 + L1PB1 LINE L1 5104 6150 -1 542 242 150 55 chrX 9061093 9061386 -153538544 - L1MC/D LINE L1 -669 5495 5282 1078 300 96 43 chrX 9061988 9062054 -153537876 + L2 LINE L2 996 1057 -2257 2523 174 22 24 chrX 9062054 9062560 -153537370 - MLT1D LTR MaLR 0 505 1 1078 300 96 43 chrX 9062560 9063147 -153536783 + L2 LINE L2 1057 1684 -1630 183 339 25 25 chrX 9064550 9064668 -153535262 - MIR3 SINE MIR -82 126 9 903 182 11 32 chrX 9064759 9064946 -153534984 - MER20 DNA MER1_type -34 185 3 191 204 20 0 chrX 9064955 9065004 -153534926 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 2266 107 0 17 chrX 9065283 9065582 -153534348 + AluSc SINE Alu 1 294 -15 198 0 0 0 chrX 9066380 9066402 -153533528 + (A)n Simple_repeat Simple_repeat 1 22 0 735 145 88 36 chrX 9066795 9066988 -153532942 - L1MA5A LINE L1 -2 6295 6093 183 146 0 0 chrX 9067062 9067103 -153532827 + (TATAA)n Simple_repeat Simple_repeat 2 42 0 326 354 0 39 chrX 9067161 9067291 -153532639 - MIR SINE MIR -125 137 13 2266 104 3 0 chrX 9067773 9068070 -153531860 + AluSq SINE Alu 3 300 -13 348 306 69 12 chrX 9068259 9068432 -153531498 - L2 LINE L2 -112 3201 3019 21 0 0 0 chrX 9068800 9068821 -153531109 + AT_rich Low_complexity Low_complexity 1 21 0 1017 219 23 5 chrX 9068982 9069197 -153530733 - MER58A DNA MER1_type -1 223 5 441 324 161 51 chrX 9069274 9070128 -153529802 - L2 LINE L2 -1 3271 2342 3730 80 11 7 chrX 9070508 9071047 -153528883 - L1MA1 LINE L1 0 6302 5762 261 226 19 0 chrX 9071050 9071103 -153528827 + MER5B DNA MER1_type 125 178 0 1843 175 140 37 chrX 9071521 9071979 -153527951 + MLT1D LTR MaLR 1 505 0 1168 214 72 3 chrX 9072206 9072496 -153527434 - MER58B DNA MER1_type -31 310 1 406 320 0 0 chrX 9072606 9072706 -153527224 + L2 LINE L2 3201 3300 -13 931 219 10 0 chrX 9073417 9073618 -153526312 + MER20 DNA MER1_type 17 219 0 23 68 0 0 chrX 9073685 9073729 -153526201 + AT_rich Low_complexity Low_complexity 1 44 0 208 286 20 92 chrX 9074345 9074443 -153525487 + MER5B DNA MER1_type 88 178 0 222 336 35 0 chrX 9074482 9074595 -153525335 + MIR SINE MIR 90 206 -56 2337 175 21 14 chrX 9074696 9075119 -153524811 + MSTB LTR MaLR 1 426 0 203 323 140 11 chrX 9075172 9075358 -153524572 - L2 LINE L2 -151 3162 2953 654 263 0 31 chrX 9075374 9075534 -153524396 + MIR SINE MIR 1 155 -107 720 196 27 91 chrX 9075559 9075778 -153524152 + MER58A DNA MER1_type 20 224 0 1036 224 25 8 chrX 9076446 9076683 -153523247 - MIR SINE MIR -11 251 11 21 0 0 0 chrX 9077428 9077449 -153522481 + AT_rich Low_complexity Low_complexity 1 21 0 456 99 0 0 chrX 9077666 9077737 -153522193 + (TG)n Simple_repeat Simple_repeat 1 71 0 315 49 0 0 chrX 9077736 9077777 -153522153 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 844 287 0 0 chrX 9078952 9079147 -153520783 - MIR SINE MIR -17 245 51 197 316 26 26 chrX 9079885 9079961 -153519969 + L2 LINE L2 2712 2787 -527 684 264 0 0 chrX 9080171 9080334 -153519596 + MLT1J1 LTR MaLR 16 178 -268 322 287 64 37 chrX 9080420 9080608 -153519322 + MLT1H LTR MaLR 108 300 -249 646 260 6 40 chrX 9081715 9081888 -153518042 - MIR SINE MIR -91 171 5 605 234 10 83 chrX 9083626 9083711 -153516219 + MER5B DNA MER1_type 1 66 -112 819 255 5 0 chrX 9083711 9083919 -153516011 + MER3 DNA MER1_type 1 209 0 605 234 10 83 chrX 9083919 9084025 -153515905 + MER5B DNA MER1_type 66 178 0 385 277 106 0 chrX 9084537 9084678 -153515252 + MIR SINE MIR 5 160 -102 34 0 0 0 chrX 9084948 9084982 -153514948 + AT_rich Low_complexity Low_complexity 1 34 0 828 296 24 8 chrX 9085501 9085754 -153514176 - MIR SINE MIR -3 259 3 1061 153 6 0 chrX 9085985 9086162 -153513768 + MER58A DNA MER1_type 45 222 -2 1619 66 14 0 chrX 9086285 9086498 -153513432 - L1PA10 LINE L1 -1 6167 5952 2861 147 31 13 chrX 9088543 9089087 -153510843 - L1MB7 LINE L1 -22 6162 5609 23 0 0 0 chrX 9089363 9089386 -153510544 + AT_rich Low_complexity Low_complexity 1 23 0 1780 202 81 28 chrX 9089805 9090272 -153509658 + MLT1D LTR MaLR 4 535 -7 24 0 0 0 chrX 9090504 9090528 -153509402 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 9091324 9091346 -153508584 + AT_rich Low_complexity Low_complexity 1 22 0 681 237 60 44 chrX 9091355 9091604 -153508326 - MIR SINE MIR -2 260 8 1100 180 33 0 chrX 9091605 9091816 -153508114 + MER20 DNA MER1_type 2 219 0 1068 162 0 6 chrX 9092262 9092429 -153507501 + FRAM SINE Alu 1 166 -10 301 239 92 0 chrX 9092459 9092568 -153507362 + L1MC4a LINE L1 5609 5727 -2081 1770 226 57 11 chrX 9092587 9093065 -153506865 + L1ME3A LINE L1 5651 6150 -20 41 21 0 0 chrX 9093072 9093120 -153506810 + AT_rich Low_complexity Low_complexity 1 48 0 458 294 18 0 chrX 9093149 9093312 -153506618 + L1MC4a LINE L1 5732 5897 -1911 181 302 16 16 chrX 9094024 9094087 -153505843 - L2 LINE L2 -6 3266 3204 368 290 32 24 chrX 9094274 9094398 -153505532 + MER5B DNA MER1_type 54 178 0 353 274 0 19 chrX 9094398 9094504 -153505426 + MER5B DNA MER1_type 75 178 0 321 274 28 28 chrX 9094675 9094781 -153505149 - MIR SINE MIR -47 215 110 265 349 31 23 chrX 9094868 9094997 -153504933 - L2 LINE L2 -7 3306 3177 192 280 20 110 chrX 9094986 9095086 -153504844 + L3 LINE CR1 1462 1552 -25 * 2062 177 64 48 chrX 9095128 9095625 -153504305 + MLT1D LTR MaLR 1 505 0 194 278 41 82 chrX 9095717 9095814 -153504116 + MER5A DNA MER1_type 73 165 -24 1025 158 10 46 chrX 9095819 9096015 -153503915 - MER5A DNA MER1_type 0 189 1 1269 198 5 0 chrX 9096400 9096617 -153503313 - MER20 DNA MER1_type 0 219 2 771 41 0 0 chrX 9097867 9097964 -153501966 - L1PB1 LINE L1 -2 6149 6053 696 188 111 68 chrX 9098240 9098447 -153501483 + MER20 DNA MER1_type 3 218 -1 1065 192 32 46 chrX 9098478 9098759 -153501171 + L1MB8 LINE L1 5899 6175 -3 318 311 211 36 chrX 9099540 9099952 -153499978 + L2 LINE L2 2823 3306 -7 180 171 29 0 chrX 9099936 9099971 -153499959 + MIR SINE MIR 193 228 -34 * 2187 148 11 3 chrX 9100160 9100525 -153499405 - L1MB7 LINE L1 -19 6165 5798 2224 111 0 0 chrX 9101368 9101666 -153498264 + AluSg SINE Alu 1 298 -12 220 309 0 15 chrX 9101950 9102018 -153497912 - L2 LINE L2 -1 3312 3246 467 235 0 0 chrX 9103695 9103793 -153496137 - MIR SINE MIR -69 193 96 25 0 0 0 chrX 9105367 9105392 -153494538 + AT_rich Low_complexity Low_complexity 1 25 0 203 0 37 0 chrX 9105502 9105529 -153494401 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 392 302 7 50 chrX 9106637 9106776 -153493154 - MER5A DNA MER1_type -28 161 29 187 173 200 0 chrX 9107256 9107331 -153492599 + L2 LINE L2 2440 2529 -785 274 296 28 0 chrX 9108364 9108435 -153491495 + polypyrimidine Low_complexity Low_complexity 4 76 0 226 330 0 50 chrX 9108781 9108881 -153491049 + MIR3 SINE MIR 112 206 -2 508 252 19 56 chrX 9108928 9109154 -153490776 + MIR SINE MIR 2 212 -50 442 324 52 6 chrX 9109571 9109744 -153490186 + MIR SINE MIR 72 252 -10 198 368 53 18 chrX 9111461 9111575 -153488355 + MIR SINE MIR 35 152 -110 250 304 155 41 chrX 9111811 9112005 -153487925 + MIR SINE MIR 13 228 -34 21 0 0 0 chrX 9112038 9112059 -153487871 + AT_rich Low_complexity Low_complexity 1 21 0 286 287 147 13 chrX 9113362 9113519 -153486411 - L2 LINE L2 -16 3297 3120 1055 172 29 10 chrX 9113730 9113934 -153485996 - MER3 DNA MER1_type -1 208 1 357 333 57 14 chrX 9115411 9115552 -153484378 + MIR SINE MIR 8 154 -108 2333 107 0 0 chrX 9115754 9116053 -153483877 - AluSx SINE Alu -13 299 1 2220 104 7 10 chrX 9116441 9116749 -153483181 - AluSc SINE Alu -2 307 1 302 213 0 0 chrX 9116775 9116836 -153483094 + MER20 DNA MER1_type 2 62 -157 433 100 50 0 chrX 9116963 9117043 -153482887 + L1PB4 LINE L1 6073 6156 0 509 180 86 23 chrX 9118123 9118251 -153481679 - MIR SINE MIR 0 262 127 180 295 62 54 chrX 9120337 9120449 -153479481 + MIR3 SINE MIR 82 194 -14 2647 159 98 23 chrX 9121315 9121546 -153478384 + L1MB7 LINE L1 5216 5428 -756 1890 148 0 30 chrX 9121546 9121844 -153478086 + AluJb SINE Alu 14 302 -10 2647 159 98 23 chrX 9121844 9122263 -153477667 + L1MB7 LINE L1 5428 5905 -279 22 0 0 0 chrX 9122953 9122975 -153476955 + AT_rich Low_complexity Low_complexity 1 22 0 369 333 24 19 chrX 9124067 9124274 -153475656 + L2 LINE L2 2199 2406 -908 532 397 28 14 chrX 9124378 9124668 -153475262 + L2 LINE L2 2411 2704 -610 666 243 51 6 chrX 9124709 9124886 -153475044 - MIR SINE MIR -69 193 9 709 309 100 54 chrX 9124936 9125467 -153474463 + L2 LINE L2 2735 3312 -1 234 350 77 26 chrX 9125983 9126100 -153473830 + MER5A DNA MER1_type 62 184 -5 727 62 0 0 chrX 9126231 9126327 -153473603 - L1PA13 LINE L1 -283 5880 5785 2131 72 17 3 chrX 9126327 9126616 -153473314 + L1PA13 LINE L1 5868 6163 0 1833 128 55 27 chrX 9126847 9127176 -153472754 - MER1B DNA MER1_type -1 338 1 1117 281 200 13 chrX 9127392 9127847 -153472083 + L2 LINE L2 2078 2617 -697 2810 127 8 20 chrX 9128093 9128581 -153471349 - L1MA8 LINE L1 -10 6281 5800 986 161 62 0 chrX 9128880 9129072 -153470858 - MER20 DNA MER1_type -14 205 2 191 227 0 0 chrX 9129481 9129525 -153470405 - MIR3 SINE MIR -3 205 162 589 63 13 0 chrX 9130274 9130353 -153469577 + MADE1 DNA Mariner 1 80 0 341 301 0 0 chrX 9130794 9130974 -153468956 + (TA)n Simple_repeat Simple_repeat 1 180 0 1141 167 11 0 chrX 9130980 9131166 -153468764 - MER5A DNA MER1_type -1 188 1 25 51 0 0 chrX 9131336 9131375 -153468555 + AT_rich Low_complexity Low_complexity 1 39 0 551 232 7 0 chrX 9132430 9132585 -153467345 + (CA)n Simple_repeat Simple_repeat 2 157 0 229 29 0 0 chrX 9133477 9133512 -153466418 + L1MA3 LINE L1 6271 6305 0 739 174 111 53 chrX 9133812 9134019 -153465911 - MER20 DNA MER1_type 0 219 1 2020 105 0 4 chrX 9134027 9134285 -153465645 - AluSq SINE Alu -18 295 39 8114 106 39 19 chrX 9134902 9135246 -153464684 + HSMAR2 DNA Mariner 2 338 -964 2340 106 3 6 chrX 9135246 9135558 -153464372 + AluSq SINE Alu 1 311 -2 8114 106 39 19 chrX 9135558 9136487 -153463443 + HSMAR2 DNA Mariner 338 1301 -1 2600 14 0 0 chrX 9136526 9136810 -153463120 - AluYb8 SINE Alu -23 295 12 1208 190 9 0 chrX 9137436 9137652 -153462278 + MER20 DNA MER1_type 2 219 0 2476 90 3 0 chrX 9137779 9138091 -153461839 - AluSp SINE Alu 0 313 1 21 36 0 0 chrX 9138538 9138566 -153461364 + AT_rich Low_complexity Low_complexity 1 28 0 250 231 150 75 chrX 9140015 9140188 -153459742 + MIR SINE MIR 35 220 -42 270 171 289 0 chrX 9141239 9141315 -153458615 - MER7A DNA MER2_type 0 336 239 1539 123 73 0 chrX 9141407 9141668 -153458262 - MER7A DNA MER2_type -68 278 1 191 283 0 0 chrX 9141732 9141785 -153458145 - MIR SINE MIR -3 259 207 979 190 78 25 chrX 9141811 9142095 -153457835 + L1MA7 LINE L1 5982 6280 -11 430 278 166 12 chrX 9142255 9142424 -153457506 - MIR SINE MIR -10 252 58 3483 139 54 27 chrX 9142585 9143217 -153456713 + MER39B LTR ERV1 1 649 -4 1840 182 25 37 chrX 9144249 9144655 -153455275 - L1MD2 LINE L1 -3 6356 5956 2748 94 11 3 chrX 9144837 9145209 -153454721 + THE1C LTR MaLR 1 375 0 3323 76 0 0 chrX 9146891 9147324 -153452606 - L1PA7 LINE L1 -6 6148 5716 37 23 0 0 chrX 9147791 9147835 -153452095 + AT_rich Low_complexity Low_complexity 1 44 0 313 247 0 0 chrX 9148316 9148393 -153451537 + MER116 DNA Mariner 4 80 0 285 183 61 17 chrX 9148836 9148951 -153450979 + (TA)n Simple_repeat Simple_repeat 1 120 0 186 270 70 120 chrX 9149265 9149365 -153450565 - L2 LINE L2 -35 3237 3143 2031 184 31 33 chrX 9149421 9149877 -153450053 - MSTB2 LTR MaLR 0 457 3 203 300 64 36 chrX 9150103 9150213 -153449717 - MIR SINE MIR -58 204 92 371 369 51 24 chrX 9150295 9150669 -153449261 + L2 LINE L2 1775 2158 -1156 406 274 32 24 chrX 9150719 9150843 -153449087 + L2 LINE L2 3186 3310 -3 36 62 0 0 chrX 9151272 9151336 -153448594 + AT_rich Low_complexity Low_complexity 1 64 0 887 296 112 51 chrX 9151342 9152111 -153447819 + L2 LINE L2 2225 3120 -193 2485 48 0 0 chrX 9152111 9152404 -153447526 + AluY SINE Alu 1 293 -18 887 296 112 51 chrX 9152404 9152610 -153447320 + L2 LINE L2 3120 3312 -1 694 245 10 16 chrX 9152646 9152718 -153447212 + L1ME1 LINE L1 5959 6030 -136 183 42 0 0 chrX 9152718 9152742 -153447188 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 694 245 10 16 chrX 9152742 9152861 -153447069 + L1ME1 LINE L1 6030 6149 -17 22 0 0 0 chrX 9152861 9152883 -153447047 + AT_rich Low_complexity Low_complexity 1 22 0 796 263 11 0 chrX 9155234 9155420 -153444510 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chrX 9155670 9155691 -153444239 + AT_rich Low_complexity Low_complexity 1 21 0 977 158 94 10 chrX 9155791 9155993 -153443937 - MER20 DNA MER1_type 0 219 1 262 243 105 144 chrX 9156007 9156054 -153443876 - MER5B DNA MER1_type -4 174 127 2457 82 0 16 chrX 9156054 9156372 -153443558 + AluSq SINE Alu 1 313 0 262 243 105 144 chrX 9156372 9156505 -153443425 - MER5B DNA MER1_type -51 127 1 772 161 0 15 chrX 9157632 9157762 -153442168 - FLAM_A SINE Alu -4 129 2 1093 215 9 0 chrX 9157861 9158080 -153441850 + MER58A DNA MER1_type 2 222 -2 1650 167 32 0 chrX 9158121 9158442 -153441488 + AluJb SINE Alu 23 352 0 324 0 0 0 chrX 9158586 9158622 -153441308 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1359 167 34 30 chrX 9160305 9160574 -153439356 - AluJo SINE Alu -4 308 39 668 266 5 29 chrX 9160991 9161198 -153438732 + L2 LINE L2 3112 3313 0 367 300 54 8 chrX 9161558 9161688 -153438242 + MIR SINE MIR 56 191 -71 354 249 20 9 chrX 9161745 9161857 -153438073 + MIR3 SINE MIR 68 184 -24 393 75 0 0 chrX 9162711 9162764 -153437166 + (CA)n Simple_repeat Simple_repeat 2 54 0 208 180 0 33 chrX 9164543 9164604 -153435326 + (TA)n Simple_repeat Simple_repeat 1 59 0 438 20 0 0 chrX 9165213 9165264 -153434666 + (TG)n Simple_repeat Simple_repeat 1 51 0 304 275 12 0 chrX 9165848 9165928 -153434002 + MIR SINE MIR 157 237 -25 537 16 0 0 chrX 9165930 9165992 -153433938 + (TC)n Simple_repeat Simple_repeat 2 63 0 261 0 0 0 chrX 9165991 9166020 -153433910 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 294 206 0 0 chrX 9166022 9166095 -153433835 + (CAT)n Simple_repeat Simple_repeat 3 75 0 877 358 86 49 chrX 9166302 9167404 -153432526 + L3 LINE CR1 418 1560 -17 2101 50 4 0 chrX 9167838 9168099 -153431831 + L1PA8 LINE L1 5904 6165 -7 2790 171 46 2 chrX 9169547 9170092 -153429838 - L1MB7 LINE L1 -19 6165 5597 543 31 0 0 chrX 9170095 9170160 -153429770 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 2132 102 0 7 chrX 9170162 9170445 -153429485 - AluSp SINE Alu -32 281 1 19109 30 0 0 chrX 9171265 9174339 -153425591 + L1PA3 LINE L1 3085 6162 0 4293 110 5 3 chrX 9175416 9176036 -153423894 + L1PA15 LINE L1 5545 6165 0 195 267 0 0 chrX 9176049 9176094 -153423836 + MIR SINE MIR 66 110 -152 347 301 29 43 chrX 9176097 9176306 -153423624 + MLT1L LTR MaLR 3 208 -407 460 257 198 32 chrX 9176698 9177036 -153422894 + MLT1L LTR MaLR 204 597 -18 222 277 53 43 chrX 9177395 9177489 -153422441 + MIR SINE MIR 50 144 -118 1560 147 34 54 chrX 9177526 9177852 -153422078 - MLT1A2 LTR MaLR -57 339 4 294 336 155 27 chrX 9178532 9178976 -153420954 - L2 LINE L2 -1108 2206 1706 208 293 12 49 chrX 9179694 9179776 -153420154 - L2 LINE L2 0 3272 3194 235 305 24 24 chrX 9180400 9180482 -153419448 + L2 LINE L2 3186 3267 -5 482 254 9 0 chrX 9180611 9180721 -153419209 - MER94 DNA DNA -3 131 21 255 31 0 0 chrX 9180830 9180862 -153419068 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 186 198 504 33 chrX 9180945 9181066 -153418864 - MER5A DNA MER1_type -3 186 9 547 320 57 12 chrX 9181124 9181368 -153418562 + MIR SINE MIR 1 255 -7 279 0 0 0 chrX 9182557 9182588 -153417342 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1097 191 48 0 chrX 9182914 9183103 -153416827 + MER58A DNA MER1_type 1 198 -26 2470 75 0 0 chrX 9184159 9184465 -153415465 + AluY SINE Alu 6 311 0 29 59 0 15 chrX 9184700 9184743 -153415187 + AT_rich Low_complexity Low_complexity 1 44 -23 345 24 0 0 chrX 9184743 9184785 -153415145 + (CA)n Simple_repeat Simple_repeat 1 42 0 29 59 0 15 chrX 9184785 9184809 -153415121 + AT_rich Low_complexity Low_complexity 44 67 0 309 207 0 0 chrX 9186074 9186132 -153413798 - MER3 DNA MER1_type -151 58 1 485 256 218 31 chrX 9186477 9186766 -153413164 + L2 LINE L2 2967 3309 -4 200 315 7 21 chrX 9187604 9187747 -153412183 + A-rich Low_complexity Low_complexity 2 142 0 1898 212 44 40 chrX 9187844 9188339 -153411591 + MLT1D LTR MaLR 8 504 -1 197 250 47 31 chrX 9188858 9188922 -153411008 + L2 LINE L2 3249 3313 0 1735 142 6 13 chrX 9188933 9189249 -153410681 + L1MB8 LINE L1 5862 6175 -3 588 217 0 0 chrX 9189877 9190020 -153409910 - L1MB7 LINE L1 -9 6175 6033 684 255 122 57 chrX 9190707 9191060 -153408870 - MLT1H LTR MaLR -173 376 1 789 220 16 0 chrX 9192183 9192369 -153407561 - MER5A DNA MER1_type 0 189 1 1096 151 80 0 chrX 9192381 9192580 -153407350 - MER20 DNA MER1_type -4 215 1 237 281 0 0 chrX 9193695 9193791 -153406139 + (ATGGTG)n Simple_repeat Simple_repeat 3 98 0 24 0 0 0 chrX 9194030 9194054 -153405876 + AT_rich Low_complexity Low_complexity 1 24 0 489 279 72 36 chrX 9195862 9196084 -153403846 + L1MC4 LINE L1 6771 7000 -1042 680 235 41 12 chrX 9196318 9196488 -153403442 + MER5B DNA MER1_type 4 178 0 468 208 85 19 chrX 9196498 9196604 -153403326 - MER81 DNA DNA 0 114 2 212 324 18 12 chrX 9196943 9197113 -153402817 + (TAA)n Simple_repeat Simple_repeat 3 173 0 605 225 59 6 chrX 9198863 9199032 -153400898 + MER5B DNA MER1_type 1 178 0 7543 30 12 0 chrX 9199222 9200450 -153399480 - L1PA4 LINE L1 -6 6149 4916 903 231 42 9 chrX 9200677 9200889 -153399041 + MER20 DNA MER1_type 1 219 0 3041 43 0 0 chrX 9201664 9202035 -153397895 - L1PA5 LINE L1 -1067 5079 4709 7268 48 0 0 chrX 9202036 9203140 -153396790 + L1PA5 LINE L1 5051 6154 0 337 188 27 181 chrX 9203279 9203428 -153396502 + MER5B DNA MER1_type 1 126 -52 299 255 10 146 chrX 9203438 9203630 -153396300 - MER5A DNA MER1_type -7 182 6 186 288 63 9 chrX 9203889 9204000 -153395930 + L2 LINE L2 2922 3038 -275 263 344 179 0 chrX 9204277 9204428 -153395502 - MIR SINE MIR -65 197 20 193 222 44 0 chrX 9205035 9205080 -153394850 - MIR SINE MIR -4 258 212 474 318 92 18 chrX 9205252 9205469 -153394461 - MIR SINE MIR -11 251 19 1481 181 29 29 chrX 9205880 9206223 -153393707 + L1MB8 LINE L1 5835 6177 -1 779 235 68 0 chrX 9206530 9206692 -153393238 - MER45A DNA AcHobo 0 178 6 828 250 55 5 chrX 9207071 9207271 -153392659 + MER63A DNA MER1_type 1 210 0 233 259 19 0 chrX 9208179 9208233 -153391697 - L2 LINE L2 -4 3309 3255 183 184 0 0 chrX 9208598 9208636 -153391294 + (CA)n Simple_repeat Simple_repeat 2 39 0 234 216 65 22 chrX 9209036 9209175 -153390755 + (TA)n Simple_repeat Simple_repeat 1 145 0 1762 156 9 37 chrX 9209260 9209581 -153390349 + AluJb SINE Alu 1 312 0 662 232 79 0 chrX 9209760 9209924 -153390006 + MIR SINE MIR 76 252 -10 204 40 0 0 chrX 9209926 9209951 -153389979 + (A)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chrX 9211018 9211041 -153388889 + (A)n Simple_repeat Simple_repeat 1 23 0 320 68 0 0 chrX 9211224 9211268 -153388662 + MADE1 DNA Mariner 3 46 -34 3501 140 29 16 chrX 9211277 9211904 -153388026 + L1MB7 LINE L1 5531 6165 -19 231 336 71 14 chrX 9211930 9212070 -153387860 - L2 LINE L2 -176 3096 2949 201 304 25 25 chrX 9212820 9212899 -153387031 - L3 LINE CR1 -3 1574 1496 1055 130 17 122 chrX 9213068 9213306 -153386624 - MER20 DNA MER1_type -4 215 3 334 350 109 0 chrX 9213642 9213825 -153386105 - MIR SINE MIR -28 234 32 1194 168 91 27 chrX 9214992 9215290 -153384640 + MER33 DNA MER1_type 7 323 -1 21 0 0 0 chrX 9216370 9216391 -153383539 + AT_rich Low_complexity Low_complexity 1 21 0 499 309 55 59 chrX 9217431 9217581 -153382349 + MIR SINE MIR 23 173 -89 1730 157 36 4 chrX 9217581 9217862 -153382068 - AluJb SINE Alu -22 290 1 499 309 55 59 chrX 9217862 9217931 -153381999 + MIR SINE MIR 173 241 -21 217 118 39 0 chrX 9218137 9218188 -153381742 + (CA)n Simple_repeat Simple_repeat 2 54 0 4052 161 17 20 chrX 9218632 9219450 -153380480 - L1MB8 LINE L1 -1 6177 5362 405 58 0 0 chrX 9220555 9220607 -153379323 + (CA)n Simple_repeat Simple_repeat 1 52 0 191 300 86 50 chrX 9220623 9220843 -153379087 + L2 LINE L2 2730 2957 -357 3566 167 15 46 chrX 9221423 9221490 -153378440 + L1MB7 LINE L1 5417 5485 -699 634 252 0 0 chrX 9221490 9221609 -153378321 + FLAM_A SINE Alu 1 119 -14 3566 167 15 46 chrX 9221609 9222318 -153377612 + L1MB7 LINE L1 5485 6169 -15 330 205 27 98 chrX 9222860 9222972 -153376958 - L1MC4 LINE L1 -1339 6703 6600 372 212 0 30 chrX 9223004 9223136 -153376794 - L1MB8 LINE L1 -7 6171 6044 627 228 168 0 chrX 9223475 9223672 -153376258 - L1MB7 LINE L1 -10 6174 5945 1734 195 15 12 chrX 9225808 9226147 -153373783 - MER58B DNA MER1_type -1 340 1 1692 98 40 0 chrX 9226552 9226827 -153373103 + L1MA8 LINE L1 6005 6290 -1 309 310 35 21 chrX 9227257 9227483 -153372447 + MLT1H LTR MaLR 57 286 -123 289 231 66 91 chrX 9227536 9227657 -153372273 + MLT1H LTR MaLR 432 549 0 501 62 0 0 chrX 9228720 9228785 -153371145 + (TA)n Simple_repeat Simple_repeat 1 65 0 1057 251 55 45 chrX 9228954 9229352 -153370578 + L1MD2 LINE L1 5956 6357 -2 820 268 70 25 chrX 9229406 9229649 -153370281 + MIR SINE MIR 9 262 0 26 74 0 0 chrX 9230214 9230268 -153369662 + AT_rich Low_complexity Low_complexity 1 54 0 471 232 93 7 chrX 9230857 9231008 -153368922 + LTR33 LTR ERVL 358 521 0 180 132 26 0 chrX 9231772 9231810 -153368120 + MER5C DNA MER1_type 160 198 -126 844 201 45 0 chrX 9232946 9233125 -153366805 - MER20 DNA MER1_type 0 219 33 247 323 40 26 chrX 9233411 9233538 -153366392 - MER5B DNA MER1_type 0 178 60 800 306 90 24 chrX 9233633 9234217 -153365713 - L2 LINE L2 0 3313 2685 184 246 53 0 chrX 9234232 9234289 -153365641 - L2 LINE L2 -898 2416 2357 374 299 15 51 chrX 9235295 9235432 -153364498 - L2 LINE L2 0 3272 3141 185 336 124 18 chrX 9235830 9235943 -153363987 + MIR3 SINE MIR 8 132 -76 270 267 13 0 chrX 9236399 9236474 -153363456 - L2 LINE L2 -878 2436 2361 271 220 0 0 chrX 9236691 9236741 -153363189 + L2 LINE L2 3222 3271 -1 22 35 0 0 chrX 9237395 9237424 -153362506 + AT_rich Low_complexity Low_complexity 1 29 0 200 373 19 32 chrX 9237795 9237953 -153361977 - MIR3 SINE MIR -3 205 50 204 237 0 0 chrX 9238375 9238413 -153361517 + polypyrimidine Low_complexity Low_complexity 4 41 0 401 234 81 18 chrX 9238474 9238585 -153361345 + L2 LINE L2 3183 3300 -13 504 48 0 0 chrX 9239465 9239528 -153360402 + (GGA)n Simple_repeat Simple_repeat 3 65 0 198 103 0 0 chrX 9240364 9240393 -153359537 + (GGAGA)n Simple_repeat Simple_repeat 3 31 0 1632 223 50 56 chrX 9240564 9241138 -153358792 + L1ME3 LINE L1 5563 6133 -29 203 0 0 36 chrX 9241166 9241194 -153358736 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chrX 9242389 9242411 -153357519 + AT_rich Low_complexity Low_complexity 1 22 0 817 209 59 0 chrX 9242411 9242598 -153357332 - L1PB4 LINE L1 -2 6154 5957 205 191 48 0 chrX 9242598 9242640 -153357290 - L2 LINE L2 -15 3298 3255 24 0 0 0 chrX 9242823 9242847 -153357083 + AT_rich Low_complexity Low_complexity 1 24 0 1527 219 41 92 chrX 9243374 9243564 -153356366 - L1ME3A LINE L1 -35 6135 5937 997 175 31 49 chrX 9243564 9243787 -153356143 - MER20 DNA MER1_type 0 219 1 1527 219 41 92 chrX 9243787 9244212 -153355718 - L1ME3A LINE L1 -233 5937 5552 259 318 231 15 chrX 9245384 9245579 -153354351 - MIR SINE MIR -2 260 24 1064 218 9 0 chrX 9245671 9245887 -153354043 + MER20 DNA MER1_type 1 218 -1 1262 159 0 44 chrX 9246668 9246894 -153353036 + MER20 DNA MER1_type 3 218 -1 216 293 13 13 chrX 9247019 9247094 -153352836 + L3b LINE CR1 1260 1334 -249 363 258 61 42 chrX 9247114 9247299 -153352631 + MER5A DNA MER1_type 1 178 0 268 366 30 0 chrX 9247314 9247415 -153352515 - MIR SINE MIR -129 133 30 447 293 96 11 chrX 9247984 9248172 -153351758 + L3 LINE CR1 1181 1384 -193 2553 167 41 20 chrX 9248177 9248717 -153351213 + L1MB7 LINE L1 5619 6169 -15 270 193 0 0 chrX 9248719 9248776 -153351154 + GA-rich Low_complexity Low_complexity 2 58 0 202 368 86 8 chrX 9248776 9248893 -153351037 + L3 LINE CR1 1370 1495 -82 974 231 29 91 chrX 9249109 9249593 -153350337 - LTR16A1 LTR ERVL 0 457 4 238 210 32 0 chrX 9250135 9250197 -153349733 + MIR SINE MIR 199 262 0 1173 159 66 19 chrX 9250907 9251165 -153348765 + MER58B DNA MER1_type 72 341 0 212 207 17 52 chrX 9253582 9253640 -153346290 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2255 225 105 40 chrX 9254623 9255312 -153344618 - L1ME3A LINE L1 0 6170 5418 2429 90 0 6 chrX 9255312 9255623 -153344307 + AluY SINE Alu 3 311 0 2255 225 105 40 chrX 9255623 9255751 -153344179 - L1ME3A LINE L1 -752 5418 5300 918 208 45 32 chrX 9255755 9255976 -153343954 - MER58A DNA MER1_type 0 224 1 257 256 0 56 chrX 9256198 9256288 -153343642 + MLT1J LTR MaLR 224 308 -203 343 268 73 8 chrX 9257032 9257155 -153342775 + MER94 DNA DNA 4 134 0 1044 154 72 19 chrX 9257308 9257516 -153342414 + MER20 DNA MER1_type 1 219 0 1228 188 28 0 chrX 9259080 9259298 -153340632 + MER58A DNA MER1_type 1 224 0 219 272 194 0 chrX 9259786 9259889 -153340041 + L2 LINE L2 777 899 -2415 370 218 92 0 chrX 9260307 9260394 -153339536 - MER5B DNA MER1_type -83 95 1 213 356 85 0 chrX 9260410 9260528 -153339402 + L2 LINE L2 2231 2358 -956 360 0 0 0 chrX 9261867 9261907 -153338023 + (TG)n Simple_repeat Simple_repeat 2 41 0 836 207 20 15 chrX 9262367 9262570 -153337360 - MER20 DNA MER1_type 0 219 16 200 213 0 43 chrX 9263488 9263535 -153336395 + L2 LINE L2 3267 3311 -2 200 300 0 0 chrX 9263739 9263789 -153336141 - L2 LINE L2 0 3313 3264 2332 93 0 7 chrX 9263809 9264111 -153335819 - AluSx SINE Alu -12 300 1 659 50 29 43 chrX 9264858 9264998 -153334932 + (TA)n Simple_repeat Simple_repeat 1 138 0 2203 75 0 55 chrX 9265615 9265923 -153334007 - AluY SINE Alu -20 291 1 180 306 102 20 chrX 9267422 9267520 -153332410 + MIR SINE MIR 41 146 -62 632 257 57 35 chrX 9267598 9268003 -153331927 + L1M4 LINE L1 4206 4619 -1527 1866 242 38 14 chrX 9268772 9269276 -153330654 - LTR40a LTR ERVL -3 516 1 883 283 113 3 chrX 9269310 9269663 -153330267 + LTR16C LTR ERVL 100 491 0 336 266 65 29 chrX 9270195 9270334 -153329596 + MIR SINE MIR 71 214 -48 1039 239 10 96 chrX 9270349 9270743 -153329187 - L2 LINE L2 -1 3312 2953 587 270 52 56 chrX 9270845 9271097 -153328833 - MIR SINE MIR -10 252 2 452 225 92 23 chrX 9271149 9271322 -153328608 + L1ME1 LINE L1 5978 6162 -4 1463 223 46 78 chrX 9271623 9272233 -153327697 + MLT1E LTR MaLR 3 587 -3 197 214 0 0 chrX 9272252 9272294 -153327636 - L2 LINE L2 0 3272 3231 716 239 29 0 chrX 9272400 9272538 -153327392 + MIR SINE MIR 25 166 -96 245 310 123 7 chrX 9272554 9272709 -153327221 - MLT1I LTR MaLR -2 407 235 401 360 89 0 chrX 9272852 9273055 -153326875 - L2 LINE L2 -289 3024 2804 302 306 37 15 chrX 9273095 9273229 -153326701 + L2 LINE L2 3136 3272 0 2015 154 0 7 chrX 9274998 9275304 -153324626 - AluJo SINE Alu -8 304 1 341 296 113 54 chrX 9275564 9275767 -153324163 + MLT1J LTR MaLR 287 501 -10 26 0 0 0 chrX 9275917 9275943 -153323987 + AT_rich Low_complexity Low_complexity 1 26 0 324 240 195 32 chrX 9276838 9276992 -153322938 - MIR SINE MIR 0 262 84 891 155 14 25 chrX 9277031 9277379 -153322551 - MER3 DNA MER1_type 0 2584 2234 481 207 16 16 chrX 9277391 9277512 -153322418 - MER3 DNA MER1_type -41 168 48 402 74 0 0 chrX 9277588 9277642 -153322288 + (TCC)n Simple_repeat Simple_repeat 2 55 0 211 374 24 32 chrX 9277642 9277765 -153322165 + L2 LINE L2 2966 3087 -185 1693 197 3 0 chrX 9278168 9278463 -153321467 - AluJo SINE Alu -12 300 5 401 145 0 3 chrX 9278820 9279053 -153320877 + AluJo SINE Alu 1 304 -8 1161 249 24 51 chrX 9279147 9279366 -153320564 + L1ME3A LINE L1 5728 5931 -239 1943 156 0 0 chrX 9279366 9279703 -153320227 + AluSx SINE Alu 6 342 0 1161 249 24 51 chrX 9279703 9279935 -153319995 + L1ME3A LINE L1 5931 6168 -2 235 276 103 0 chrX 9279943 9280030 -153319900 + L1ME3 LINE L1 949 1044 -5075 1374 200 61 47 chrX 9280470 9280830 -153319100 + MLT1A1 LTR MaLR 1 365 0 782 225 6 0 chrX 9282417 9282577 -153317353 + MER45A DNA AcHobo 1 161 -17 578 118 0 55 chrX 9282751 9282861 -153317069 + L1MD3 LINE L1 7880 7983 -12 314 272 35 9 chrX 9283225 9283339 -153316591 + L1ME3 LINE L1 4441 4557 -1572 320 244 12 0 chrX 9283420 9283502 -153316428 + L1MCc LINE L1 822 904 -5519 829 276 96 68 chrX 9283595 9283767 -153316163 - L2 LINE L2 0 3313 3147 1103 161 28 5 chrX 9283767 9283978 -153315952 - MER20 DNA MER1_type -3 216 1 829 276 96 68 chrX 9283978 9284243 -153315687 - L2 LINE L2 -166 3147 2864 1747 200 30 30 chrX 9284978 9285439 -153314491 + MLT1C LTR MaLR 7 467 0 2211 200 20 20 chrX 9286320 9286776 -153313154 + MSTB2 LTR MaLR 2 457 0 421 266 53 89 chrX 9286778 9287172 -153312758 - L1ME4a LINE L1 -277 5844 5465 426 20 0 0 chrX 9287224 9287275 -153312655 + (CA)n Simple_repeat Simple_repeat 2 52 0 467 205 161 53 chrX 9287304 9287645 -153312285 + L1ME3 LINE L1 5006 5383 -746 2158 239 67 40 chrX 9287703 9288789 -153311141 + L1ME2 LINE L1 4147 5295 -851 2934 222 42 25 chrX 9288852 9289686 -153310244 + L1ME2 LINE L1 5325 6332 -2 2519 199 105 5 chrX 9289686 9290334 -153309596 + L1ME3 LINE L1 5422 6134 -11 946 172 41 0 chrX 9291202 9291371 -153308559 + MER45A DNA AcHobo 1 176 -2 2496 135 36 42 chrX 9291791 9292295 -153307635 + L1MB8 LINE L1 5672 6172 -6 747 171 50 17 chrX 9293267 9293448 -153306482 - MER53 DNA DNA -2 187 1 685 233 56 42 chrX 9293704 9293919 -153306011 + MER20 DNA MER1_type 1 218 -1 733 291 124 45 chrX 9294805 9295320 -153304610 + MLT1L LTR MaLR 1 556 -59 283 270 30 60 chrX 9295622 9295722 -153304208 + MIR SINE MIR 118 214 -48 1016 176 5 4 chrX 9395783 9399631 -153200299 - ALR/Alpha Satellite centromeric 0 3854 1 1177 163 4 2 chrX 9399645 9401919 -153198011 + ALR/Alpha Satellite centromeric 1 2268 -18819 8441 58 7 0 chrX 9401919 9403774 -153196156 + L1PA3 LINE L1 4292 6152 -3 1177 163 4 2 chrX 9403774 9405379 -153194551 + ALR/Alpha Satellite centromeric 2268 3868 -17219 7013 47 5 2 chrX 9405379 9407002 -153192928 - L1PA3 LINE L1 -3 6152 4523 1177 163 4 2 chrX 9407002 9420669 -153179261 + ALR/Alpha Satellite centromeric 3868 21074 -13 1098 152 3 3 chrX 9420682 9422845 -153177085 + ALR/Alpha Satellite centromeric 1 2164 -59 2510 131 129 164 chrX 9422847 9423730 -153176200 - pTR5 LTR ERV1 0 2438 1587 1025 191 1 0 chrX 9423746 9426128 -153173802 - ALR/Alpha Satellite centromeric -2 2383 1 1344 133 3 0 chrX 9426142 9427573 -153172357 - ALR/Alpha Satellite centromeric 0 1434 1 1188 156 2 1 chrX 9427585 9448622 -153151308 - ALR/Alpha Satellite centromeric -1 21060 1 7319 46 0 0 chrX 9448622 9450165 -153149765 + L1PA3 LINE L1 4610 6151 -4 25 31 0 0 chrX 9450165 9450197 -153149733 + AT_rich Low_complexity Low_complexity 1 32 0 242 0 61 0 chrX 9450202 9450235 -153149695 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1095 165 4 3 chrX 9450235 9456794 -153143136 + ALR/Alpha Satellite centromeric 1 7889 -111 7430 37 0 0 chrX 9456794 9458113 -153141817 - L1PA3 LINE L1 0 6155 4837 9294 33 0 2 chrX 9458124 9459243 -153140687 + L1PA3 LINE L1 3691 4807 -1339 1144 169 4 4 chrX 9459243 9466657 -153133273 + ALR/Alpha Satellite centromeric 1 7416 -9 1083 171 2 3 chrX 9466668 9472160 -153127770 + ALR/Alpha Satellite centromeric 1 5484 -6 1070 155 5 2 chrX 9472172 9473530 -153126400 + ALR/Alpha Satellite centromeric 1 1361 -6 1034 173 1 2 chrX 9473545 9475075 -153124855 + ALR/Alpha Satellite centromeric 1 1527 -26 1089 170 5 2 chrX 9475086 9487258 -153112672 + ALR/Alpha Satellite centromeric 1 12213 -1 1124 176 8 5 chrX 9487270 9491962 -153107968 + ALR/Alpha Satellite centromeric 1 4705 -16 5166 74 3 0 chrX 9491962 9492655 -153107275 - L1PA4 LINE L1 -1070 5076 4382 6933 58 1 9 chrX 9492655 9493727 -153106203 + L1PA4 LINE L1 5085 6152 -3 976 163 4 2 chrX 9493735 9494283 -153105647 + ALR/Alpha Satellite centromeric 1 549 -1 15868 74 9 1 chrX 9494283 9496427 -153103503 + L1PA4 LINE L1 665 2825 -3321 6247 40 3 0 chrX 9496427 9497179 -153102751 + L1PA3 LINE L1 5397 6152 -3 19383 60 2 8 chrX 9497198 9500511 -153099419 + L1PA4 LINE L1 2840 6155 0 1153 163 5 2 chrX 9500516 9510522 -153089408 + ALR/Alpha Satellite centromeric 1 10038 0 1189 142 6 3 chrX 9510535 9517515 -153082415 + ALR/Alpha Satellite centromeric 1 6999 0 1223 152 7 1 chrX 9517528 9527861 -153072069 + ALR/Alpha Satellite centromeric 1 10396 0 4736 41 7 0 chrX 9527888 9528470 -153071460 + L1PA3 LINE L1 5566 6151 -4 1099 156 3 2 chrX 9528526 9529831 -153070099 + ALR/Alpha Satellite centromeric 1 1306 0 201 74 0 0 chrX 9529849 9529876 -153070054 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7100 50 0 0 chrX 9529876 9530843 -153069087 - L1PA4 LINE L1 -13 6142 5174 20384 49 6 8 chrX 9530843 9533465 -153066465 + L1PA4 LINE L1 2533 5148 -998 1156 163 2 3 chrX 9533467 9540668 -153059262 + ALR/Alpha Satellite centromeric 1 7198 -14 1072 169 0 4 chrX 9540683 9541188 -153058742 + ALR/Alpha Satellite centromeric 1 502 -12 1209 158 9 1 chrX 9541200 9545073 -153054857 + ALR/Alpha Satellite centromeric 1 3901 -64 21058 57 3 9 chrX 9545073 9547864 -153052066 - L1PA4 LINE L1 -1119 5027 2253 6370 86 8 0 chrX 9547864 9548982 -153050948 + L1PA4 LINE L1 5028 6151 -4 1055 167 17 4 chrX 9549015 9551886 -153048044 + ALR/Alpha Satellite centromeric 1 2906 -15 1021 178 7 4 chrX 9551899 9555114 -153044816 + ALR/Alpha Satellite centromeric 1 3224 -14 1180 157 8 3 chrX 9555128 9565026 -153034904 + ALR/Alpha Satellite centromeric 1 10053 -7923 201 39 0 0 chrX 9565026 9565052 -153034878 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1180 157 8 3 chrX 9565052 9573006 -153026924 + ALR/Alpha Satellite centromeric 10053 17966 -10 1114 165 8 4 chrX 9573017 9579593 -153020337 + ALR/Alpha Satellite centromeric 1 6601 -34 369 0 0 0 chrX 9579595 9579636 -153020294 + (TG)n Simple_repeat Simple_repeat 2 42 0 1192 153 7 2 chrX 9579646 9589199 -153010731 + ALR/Alpha Satellite centromeric 1 9602 0 22 0 0 0 chrX 9689230 9689252 -152910678 + AT_rich Low_complexity Low_complexity 1 22 0 634 277 34 43 chrX 9689349 9689674 -152910256 + L1ME4a LINE L1 5561 5882 -239 2029 235 117 16 chrX 9689707 9690218 -152909712 - MLT1E LTR MaLR 0 593 31 423 207 40 52 chrX 9690219 9690393 -152909537 + L1ME4a LINE L1 5947 6118 -3 30 45 0 0 chrX 9690400 9690444 -152909486 + AT_rich Low_complexity Low_complexity 1 44 0 543 219 9 0 chrX 9691086 9691191 -152908739 - MER94 DNA DNA -28 106 1 443 33 0 0 chrX 9693698 9693758 -152906172 + L1MA1 LINE L1 6242 6301 -1 2896 67 0 0 chrX 9694174 9694546 -152905384 - L1PA6 LINE L1 -6 6148 5777 222 237 0 0 chrX 9694685 9694761 -152905169 + GA-rich Low_complexity Low_complexity 1 76 0 2517 158 20 18 chrX 9697368 9697824 -152902106 + L1MB7 LINE L1 5620 6076 -108 305 100 0 0 chrX 9697824 9697862 -152902068 + L1MB8 LINE L1 6123 6172 -6 869 247 34 71 chrX 9698627 9699033 -152900897 + MLT1H LTR MaLR 84 586 -4 249 222 0 141 chrX 9699294 9699393 -152900537 - LTR67 LTR ERVL -242 315 231 3314 216 26 25 chrX 9699438 9700258 -152899672 + L1ME1 LINE L1 5297 6114 -52 1236 132 68 117 chrX 9700964 9701290 -152898640 - THE1C LTR MaLR -65 310 1 1114 197 95 19 chrX 9702740 9703004 -152896926 + L1MD3 LINE L1 7551 7834 -161 1388 154 36 0 chrX 9703005 9703252 -152896678 + L1MA6 LINE L1 6036 6291 -9 186 279 342 0 chrX 9703586 9703697 -152896233 - MIR SINE MIR -68 194 46 532 218 9 9 chrX 9703991 9704101 -152895829 + MLT1H1 LTR MaLR 2 111 -444 761 241 152 22 chrX 9704122 9704381 -152895549 + MLT1H1 LTR MaLR 253 555 0 383 282 123 26 chrX 9704404 9704599 -152895331 + LTR16C LTR ERVL 276 489 -2 1886 160 16 16 chrX 9704938 9705250 -152894680 - AluJo SINE Alu 0 312 1 6344 87 28 2 chrX 9706091 9707345 -152892585 - L1PA13 LINE L1 -5 6158 4891 251 152 0 0 chrX 9707347 9707393 -152892537 + L1PA13 LINE L1 4862 4907 -1239 232 309 157 51 chrX 9707611 9707847 -152892083 + L3 LINE CR1 1308 1568 -9 196 170 21 43 chrX 9708419 9708466 -152891464 + L2 LINE L2 3263 3308 -5 763 231 121 5 chrX 9708550 9708749 -152891181 - MIR SINE MIR -12 250 29 262 327 49 43 chrX 9708710 9708872 -152891058 + MIR SINE MIR 21 183 -79 * 4187 155 37 9 chrX 9709833 9710590 -152889340 - L1MB7 LINE L1 -6 6178 5401 1940 136 101 119 chrX 9711318 9711832 -152888098 - MLT1D LTR MaLR 0 505 1 186 321 115 36 chrX 9711848 9712013 -152887917 + L2 LINE L2 3129 3306 -7 277 362 48 43 chrX 9712405 9712797 -152887133 - L2 LINE L2 -834 2480 2087 278 359 84 7 chrX 9713033 9713175 -152886755 + MIR3 SINE MIR 35 187 -21 1096 206 5 5 chrX 9713757 9713976 -152885954 - MER20 DNA MER1_type 0 219 1 797 194 87 24 chrX 9714323 9714450 -152885480 - MER20 DNA MER1_type 0 219 73 1656 168 157 42 chrX 9714450 9714903 -152885027 + MLT1D LTR MaLR 1 505 0 797 194 87 24 chrX 9714903 9714981 -152884949 - MER20 DNA MER1_type -146 73 1 1730 121 121 14 chrX 9715234 9715516 -152884414 + AluSx SINE Alu 1 312 0 198 402 25 33 chrX 9715700 9715944 -152883986 + L2 LINE L2 2923 3164 -108 1119 205 19 0 chrX 9716772 9716987 -152882943 + MER20 DNA MER1_type 1 219 0 204 40 0 0 chrX 9717363 9717388 -152882542 + (CA)n Simple_repeat Simple_repeat 2 26 0 2233 110 3 0 chrX 9724888 9725196 -152874734 - AluSq SINE Alu -4 309 1 376 221 17 15 chrX 9726005 9726112 -152873818 - L1ME2 LINE L1 -31 6139 6028 2154 189 19 43 chrX 9726265 9726735 -152873195 + MLT1C LTR MaLR 1 459 -8 270 0 0 0 chrX 9728295 9728325 -152871605 + (GA)n Simple_repeat Simple_repeat 1 30 0 184 297 16 16 chrX 9728336 9728400 -152871530 + MIR SINE MIR 88 151 -111 666 243 68 19 chrX 9728563 9728769 -152871161 - MIR SINE MIR 0 262 47 259 243 103 56 chrX 9728954 9729061 -152870869 - MIR SINE MIR -20 242 131 180 225 25 0 chrX 9729278 9729318 -152870612 - L3b LINE CR1 -338 1245 1205 2674 144 74 2 chrX 9729815 9729844 -152870086 + LOR1b LTR ERV1 1 26 -435 2724 26 3 0 chrX 9729844 9730150 -152869780 - AluY SINE Alu -4 307 1 2674 144 74 2 chrX 9730150 9730550 -152869380 + LOR1b LTR ERV1 26 461 0 217 320 100 0 chrX 9730911 9731011 -152868919 + L2 LINE L2 3204 3313 0 308 132 0 0 chrX 9731133 9731186 -152868744 - L1MB8 LINE L1 -1 6177 6125 671 258 112 27 chrX 9732302 9732562 -152867368 - L2 LINE L2 -11 3302 3021 1968 132 0 4 chrX 9732736 9733017 -152866913 - AluSx SINE Alu -13 299 20 1958 141 3 0 chrX 9734815 9735240 -152864690 - AluSx SINE Alu 0 426 1 651 248 171 0 chrX 9735318 9735528 -152864402 + MIR SINE MIR 12 257 -5 2090 127 16 7 chrX 9735643 9735951 -152863979 - AluJb SINE Alu -1 311 1 1993 142 23 54 chrX 9736956 9737084 -152862846 + MER2 DNA MER2_type 3 133 -211 1900 136 0 0 chrX 9737084 9737376 -152862554 - AluSx SINE Alu 0 310 19 1993 142 23 54 chrX 9737376 9737599 -152862331 + MER2 DNA MER2_type 133 344 0 340 256 0 22 chrX 9737641 9737731 -152862199 - L1MC4 LINE L1 -1341 6701 6614 1526 122 36 0 chrX 9738501 9738722 -152861208 + L1PA15 LINE L1 5935 6163 -2 302 216 117 9 chrX 9738722 9738833 -152861097 + L1MEc LINE L1 2194 2316 -4080 243 291 71 47 chrX 9739550 9739677 -152860253 - MIR3 SINE MIR -6 202 73 200 305 16 47 chrX 9740566 9740694 -152859236 + L2 LINE L2 2545 2668 -646 612 186 98 0 chrX 9740902 9741004 -152858926 - FLAM_A SINE Alu -22 120 9 181 358 173 26 chrX 9741071 9741297 -152858633 + L2 LINE L2 3009 3267 -5 254 276 29 29 chrX 9741460 9741565 -152858365 + L1 LINE L1 4908 5012 -1134 294 305 53 22 chrX 9742235 9742370 -152857560 + MIR SINE MIR 13 153 -74 22 56 0 0 chrX 9743053 9743089 -152856841 + AT_rich Low_complexity Low_complexity 1 36 0 324 0 0 0 chrX 9743638 9743674 -152856256 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chrX 9744159 9744181 -152855749 + AT_rich Low_complexity Low_complexity 1 22 0 6037 138 31 14 chrX 9744237 9745540 -152854390 + L1MA7 LINE L1 4964 6291 0 594 138 60 69 chrX 9745557 9745673 -152854257 - FLAM_A SINE Alu -18 124 10 2143 139 124 23 chrX 9746405 9746792 -152853138 - MSTA LTR MaLR 0 428 3 688 287 54 43 chrX 9746924 9747261 -152852669 - L1M4 LINE L1 -2801 3345 3013 2841 101 3 14 chrX 9747261 9747629 -152852301 + THE1B LTR MaLR 1 364 0 688 287 54 43 chrX 9747629 9747666 -152852264 - L1M4 LINE L1 -3133 3013 2978 873 153 0 23 chrX 9747666 9747797 -152852133 - FLAM_A SINE Alu -5 128 1 688 287 54 43 chrX 9747797 9748110 -152851820 - L1M4 LINE L1 -3168 2978 2650 504 250 11 28 chrX 9748133 9748313 -152851617 - L1M4 LINE L1 -3748 2398 2222 514 211 199 39 chrX 9749272 9749428 -152850502 - MER5A DNA MER1_type 0 189 9 360 220 60 40 chrX 9749458 9749558 -152850372 + L2 LINE L2 3212 3313 0 2069 86 52 0 chrX 9750041 9750342 -152849588 + AluSx SINE Alu 1 315 0 23 33 0 0 chrX 9750610 9750640 -152849290 + AT_rich Low_complexity Low_complexity 1 30 0 231 337 89 15 chrX 9752584 9752786 -152847144 + MLT1L LTR MaLR 197 413 -202 601 191 0 0 chrX 9752967 9753074 -152846856 + MER5A DNA MER1_type 1 107 -82 271 328 122 28 chrX 9753306 9753490 -152846440 - MIR3 SINE MIR -56 206 9 2263 112 3 6 chrX 9754522 9754834 -152845096 + AluSx SINE Alu 1 311 -1 395 261 71 76 chrX 9754845 9754920 -152845010 + L2 LINE L2 3077 3151 -162 1733 124 0 127 chrX 9754920 9755266 -152844664 - AluJo SINE Alu 0 302 1 395 261 71 76 chrX 9755266 9755428 -152844502 + L2 LINE L2 3151 3313 0 2209 113 0 0 chrX 9756283 9756575 -152843355 - AluSx SINE Alu -20 292 1 2138 106 3 13 chrX 9758641 9758944 -152840986 - AluSp SINE Alu -13 300 1 2733 125 2 20 chrX 9760549 9760958 -152838972 - MER50 LTR ERV1 -9 725 324 491 248 72 8 chrX 9761006 9761131 -152838799 + MIR3 SINE MIR 57 189 -19 552 236 9 96 chrX 9761895 9762115 -152837815 + L1MC4a LINE L1 5755 5955 -1853 44178 28 21 1 chrX 9762204 9768235 -152831695 + L1HS LINE L1 1 6155 0 730 153 24 0 chrX 9768354 9768478 -152831452 - L1MB8 LINE L1 -63 6115 5989 1035 221 156 18 chrX 9769620 9770195 -152829735 - LTR50 LTR ERVL -4 791 1 2180 110 0 13 chrX 9770405 9770705 -152829225 + AluSx SINE Alu 3 298 -14 684 177 0 15 chrX 9770776 9770906 -152829024 - MER20 DNA MER1_type -91 128 1 306 0 0 0 chrX 9771218 9771252 -152828678 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 288 240 113 95 chrX 9771817 9772019 -152827911 - L1ME4a LINE L1 -21 6100 5890 2121 133 7 0 chrX 9772019 9772312 -152827618 - AluSx SINE Alu -17 295 1 288 240 113 95 chrX 9772312 9772392 -152827538 - L1ME4a LINE L1 -231 5890 5813 2288 121 0 0 chrX 9772604 9772911 -152827019 + AluSx SINE Alu 1 307 -5 183 207 86 35 chrX 9772952 9773010 -152826920 + MIR SINE MIR 201 261 -1 1054 201 9 31 chrX 9773121 9773345 -152826585 - MER20 DNA MER1_type 0 219 1 277 303 40 0 chrX 9774282 9774381 -152825549 - MLT1J2 LTR MaLR -293 157 55 2419 174 54 11 chrX 9774519 9774967 -152824963 + MLT1C LTR MaLR 1 467 0 1872 148 24 14 chrX 9775866 9776163 -152823767 + AluSx SINE Alu 1 300 -12 653 244 0 29 chrX 9776237 9776409 -152823521 - MIR SINE MIR -2 260 94 2340 50 0 7 chrX 9776673 9776951 -152822979 + AluY SINE Alu 34 309 -2 247 246 8 59 chrX 9777005 9777050 -152822880 - MLT2F LTR ERVL 0 663 617 2044 161 24 24 chrX 9777050 9777422 -152822508 + MLT1A2 LTR MaLR 1 372 -2 247 246 8 59 chrX 9777422 9777494 -152822436 - MLT2F LTR ERVL -46 617 552 741 306 70 25 chrX 9777540 9777867 -152822063 - MLT2F LTR ERVL -319 344 3 196 192 61 61 chrX 9777877 9777976 -152821954 - L2 LINE L2 -830 2484 2386 180 77 0 0 chrX 9778505 9778531 -152821399 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 725 126 0 18 chrX 9778531 9778642 -152821288 - AluJb SINE Alu -191 121 13 262 339 97 42 chrX 9779177 9779342 -152820588 + MER5A DNA MER1_type 16 189 0 1586 209 47 3 chrX 9779791 9780111 -152819819 - MER58B DNA MER1_type -7 334 1 219 349 95 8 chrX 9780721 9780847 -152819083 + MIR SINE MIR 3 139 -123 27 0 0 0 chrX 9781779 9781806 -152818124 + AT_rich Low_complexity Low_complexity 1 27 0 6697 104 2 3 chrX 9781806 9783401 -152816529 - L1PA16 LINE L1 -12 6154 4558 2138 192 132 9 chrX 9783714 9784162 -152815768 - MLT1D LTR MaLR 0 505 3 197 336 69 9 chrX 9784256 9784372 -152815558 + L2 LINE L2 3170 3292 -21 5914 125 30 25 chrX 9785472 9786135 -152813795 + L1MA8 LINE L1 5112 5787 -504 1939 134 44 0 chrX 9786135 9786433 -152813497 + AluSx SINE Alu 1 311 -1 5914 125 30 25 chrX 9786433 9786938 -152812992 + L1MA8 LINE L1 5787 6288 -3 1050 173 77 29 chrX 9788264 9788472 -152811458 - MER20 DNA MER1_type -1 218 1 271 280 178 8 chrX 9789334 9789490 -152810440 - MIR SINE MIR -63 145 12 539 291 146 0 chrX 9789563 9789721 -152810209 + MER5A DNA MER1_type 9 189 0 503 226 119 48 chrX 9789921 9790089 -152809841 + MER117 DNA MER1_type 18 197 0 715 199 49 3 chrX 9792493 9792758 -152807172 - MLT1D LTR MaLR 0 505 147 234 240 182 58 chrX 9793353 9793488 -152806442 + L1MC4a LINE L1 5272 5389 -2419 1774 154 6 61 chrX 9793488 9793818 -152806112 - AluSx SINE Alu 0 312 1 234 240 182 58 chrX 9793818 9793940 -152805990 + L1MC4a LINE L1 5389 5561 -2247 513 190 138 109 chrX 9793947 9794048 -152805882 - MER5A DNA MER1_type 0 189 79 1660 193 21 0 chrX 9794048 9794333 -152805597 - AluJb SINE Alu -21 291 1 513 190 138 109 chrX 9794333 9794405 -152805525 - MER5A DNA MER1_type -110 79 11 254 388 6 0 chrX 9794421 9794599 -152805331 + L1MC4a LINE L1 5574 5752 -2056 268 321 43 27 chrX 9795216 9795403 -152804527 + ERVL LTR ERVL 5238 5427 -337 352 282 29 52 chrX 9796190 9796364 -152803566 + L1MC4a LINE L1 5755 5924 -1884 2519 68 0 0 chrX 9797884 9798192 -152801738 - AluY SINE Alu -1 310 3 1955 165 39 59 chrX 9799247 9799567 -152800363 - LOR1b LTR ERV1 0 461 149 207 0 0 0 chrX 9799567 9799590 -152800340 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1955 165 39 59 chrX 9799590 9799676 -152800254 - LOR1b LTR ERV1 -312 149 63 2076 129 7 7 chrX 9799677 9799971 -152799959 - AluSx SINE Alu -15 297 4 288 130 0 0 chrX 9800010 9800056 -152799874 + (TG)n Simple_repeat Simple_repeat 1 46 0 242 270 54 14 chrX 9800119 9800193 -152799737 + MIR SINE MIR 156 232 -30 239 155 241 0 chrX 9800427 9800485 -152799445 + LOR1a LTR ERV1 1 72 -425 2964 254 88 25 chrX 9800492 9800797 -152799133 - L1M4 LINE L1 -1012 5134 4850 2030 158 56 12 chrX 9800797 9801120 -152798810 - MER1B DNA MER1_type 0 337 1 2964 254 88 25 chrX 9801120 9801870 -152798060 - L1M4 LINE L1 -1296 4850 4012 279 0 0 0 chrX 9802188 9802219 -152797711 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1867 128 0 32 chrX 9802223 9802368 -152797562 - AluSx SINE Alu -40 272 139 198 0 0 0 chrX 9802368 9802390 -152797540 + (TA)n Simple_repeat Simple_repeat 2 23 0 1867 128 0 32 chrX 9802390 9802525 -152797405 - AluSx SINE Alu -173 139 1 419 254 45 45 chrX 9803040 9803174 -152796756 - L2 LINE L2 0 3272 3139 1646 173 0 20 chrX 9803376 9803676 -152796254 - AluJo SINE Alu -17 295 2 372 240 66 16 chrX 9803833 9803954 -152795976 - L2 LINE L2 -52 3261 3135 396 301 89 79 chrX 9804042 9804534 -152795396 - L2 LINE L2 -365 2949 2453 284 304 72 39 chrX 9804564 9804745 -152795185 - L2 LINE L2 -814 2500 2314 260 156 44 0 chrX 9805542 9805587 -152794343 - MLT1K LTR MaLR -2 586 540 1133 146 6 22 chrX 9806258 9806436 -152793494 + FAM SINE Alu 1 175 0 466 230 129 22 chrX 9807400 9807578 -152792352 + MIR SINE MIR 66 262 0 258 211 0 0 chrX 9808084 9808141 -152791789 - L1ME LINE L1 -266 5855 5799 452 317 37 0 chrX 9808329 9808493 -152791437 + MIR SINE MIR 89 258 -4 2449 200 34 53 chrX 9808493 9809077 -152790853 + MER90 LTR ERV1 1 573 -2 574 230 74 120 chrX 9809748 9810166 -152789764 - MLT1L LTR MaLR -73 542 144 235 185 15 62 chrX 9810167 9810232 -152789698 - MER5B DNA MER1_type -5 173 112 193 302 0 0 chrX 9810250 9810303 -152789627 + MER5B DNA MER1_type 126 178 0 340 164 75 0 chrX 9810530 9810597 -152789333 + MER90 LTR ERV1 183 254 -360 215 308 126 61 chrX 9810653 9810867 -152789063 + L2 LINE L2 3031 3258 -14 198 0 0 0 chrX 9810868 9810890 -152789040 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 655 279 40 24 chrX 9810927 9811174 -152788756 - MIR SINE MIR -3 259 9 307 319 66 36 chrX 9811643 9811809 -152788121 + L2 LINE L2 2364 2534 -780 187 255 21 0 chrX 9812305 9812352 -152787578 - L2 LINE L2 -2 3311 3264 302 310 153 72 chrX 9812490 9813171 -152786759 + L1M2 LINE L1 504 1239 -5610 189 0 0 0 chrX 9813370 9813391 -152786539 + (CGGGGG)n Simple_repeat Simple_repeat 1 21 0 28 0 0 0 chrX 9815550 9815578 -152784352 + AT_rich Low_complexity Low_complexity 1 28 0 476 325 18 24 chrX 9817395 9817564 -152782366 - MER5B DNA MER1_type -10 168 1 22 0 0 0 chrX 9818055 9818077 -152781853 + AT_rich Low_complexity Low_complexity 1 22 0 1144 199 19 5 chrX 9820010 9820226 -152779704 - MER20 DNA MER1_type 0 219 1 217 258 121 45 chrX 9822013 9822145 -152777785 + L2 LINE L2 3162 3303 -10 369 83 50 0 chrX 9822246 9822306 -152777624 - L1MB7 LINE L1 0 6184 6122 1184 176 75 75 chrX 9822317 9822596 -152777334 + AluJo SINE Alu 3 281 -31 889 181 50 6 chrX 9822637 9822819 -152777111 - L1MB7 LINE L1 -93 6091 5902 423 129 43 0 chrX 9822965 9823035 -152776895 - L1MB5 LINE L1 -8 6166 6094 1729 166 15 15 chrX 9823055 9823380 -152776550 - L1MB7 LINE L1 -63 6121 5797 1438 189 86 17 chrX 9823906 9824208 -152775722 - MER58B DNA MER1_type -17 324 2 1903 131 0 26 chrX 9824555 9824860 -152775070 - AluJb SINE Alu -15 297 1 619 235 142 73 chrX 9824908 9825197 -152774733 - MER58B DNA MER1_type -30 311 3 2113 107 0 4 chrX 9826555 9826835 -152773095 - AluSq SINE Alu -34 279 1 2475 74 3 0 chrX 9829263 9829572 -152770358 - AluY SINE Alu -1 310 1 2509 60 0 3 chrX 9831595 9831894 -152768036 + AluY SINE Alu 1 298 -13 857 231 77 15 chrX 9834518 9834886 -152765044 - L2 LINE L2 -270 3043 2652 1984 141 13 7 chrX 9834886 9835005 -152764925 + AluJo SINE Alu 1 118 -194 207 0 0 0 chrX 9835005 9835028 -152764902 + (CA)n Simple_repeat Simple_repeat 2 24 0 1984 141 13 7 chrX 9835028 9835213 -152764717 + AluJo SINE Alu 118 307 -5 857 231 77 15 chrX 9835213 9835243 -152764687 - L2 LINE L2 -661 2652 2625 289 273 45 53 chrX 9835306 9835438 -152764492 - L2 LINE L2 -1029 2285 2155 518 67 13 0 chrX 9835446 9835521 -152764409 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 920 186 50 25 chrX 9835539 9835738 -152764192 - AluJo SINE Alu -23 289 86 1538 93 14 19 chrX 9835738 9835953 -152763977 - AluSq SINE Alu -99 214 1 200 271 0 0 chrX 9836995 9837043 -152762887 + CT-rich Low_complexity Low_complexity 1 48 0 2401 193 47 26 chrX 9837245 9837738 -152762192 - MLT1D LTR MaLR -2 503 1 678 224 36 24 chrX 9837813 9837978 -152761952 + MER69A DNA AcHobo 1 167 -10 1487 166 28 21 chrX 9838473 9838740 -152761190 + L1MB7 LINE L1 5879 6150 -34 2874 130 34 0 chrX 9838740 9839154 -152760776 + MSTA LTR MaLR 1 428 0 1487 166 28 21 chrX 9839154 9839169 -152760761 + L1MB7 LINE L1 6150 6163 -21 866 205 175 119 chrX 9840200 9840679 -152759251 + MLT1H LTR MaLR 36 541 -8 226 203 14 14 chrX 9841201 9841275 -152758655 + (TA)n Simple_repeat Simple_repeat 2 75 0 287 313 29 47 chrX 9841306 9841514 -152758416 - L1ME LINE L1 -301 5820 5616 21 0 0 0 chrX 9842356 9842377 -152757553 + AT_rich Low_complexity Low_complexity 1 21 0 230 198 231 58 chrX 9842565 9842686 -152757244 + LTR41 LTR ERVL 28 169 -604 399 287 11 0 chrX 9842928 9843022 -152756908 - L1ME LINE L1 -508 5613 5519 223 221 116 116 chrX 9843104 9843199 -152756731 - MER5A DNA MER1_type 0 189 95 27 0 0 0 chrX 9843431 9843458 -152756472 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chrX 9843812 9843835 -152756095 + AT_rich Low_complexity Low_complexity 1 23 0 1128 217 19 5 chrX 9844047 9844259 -152755671 + MER58A DNA MER1_type 7 221 -3 3765 146 38 5 chrX 9844798 9845428 -152754502 - L1MB2 LINE L1 -1 6170 5520 22 0 0 0 chrX 9845453 9845475 -152754455 + AT_rich Low_complexity Low_complexity 1 22 0 468 210 75 14 chrX 9846090 9846507 -152753423 - MLT1H LTR MaLR -8 547 12 1177 174 1 4 chrX 9846640 9846883 -152753047 - MER58A DNA MER1_type -5 219 1 1671 156 87 10 chrX 9846938 9847227 -152752703 + AluJb SINE Alu 1 311 -1 1801 186 159 7 chrX 9848343 9848758 -152751172 + LTR48 LTR ERV1 1 478 -309 1064 200 10 10 chrX 9849414 9849619 -152750311 + LTR48B LTR ERV1 440 644 0 2231 99 16 0 chrX 9850427 9850730 -152749200 - AluSg1 SINE Alu 0 309 2 397 193 101 92 chrX 9851565 9851793 -152748137 - L1MC5 LINE L1 -42 7919 7690 23 54 0 0 chrX 9851978 9852015 -152747915 + AT_rich Low_complexity Low_complexity 1 37 0 1847 157 80 17 chrX 9852015 9852366 -152747564 - THE1C LTR MaLR -2 373 1 2658 157 40 65 chrX 9852378 9852915 -152747015 + L1MB7 LINE L1 5581 6068 -98 2212 103 0 3 chrX 9852915 9853205 -152746725 + AluSq SINE Alu 1 289 -24 2658 157 40 65 chrX 9853205 9853299 -152746631 + L1MB7 LINE L1 6068 6163 -3 2050 142 7 0 chrX 9853461 9853756 -152746174 - AluSx SINE Alu -15 297 1 1164 207 31 105 chrX 9854138 9854596 -152745334 - L1MC5 LINE L1 -370 7591 7168 1740 222 189 2 chrX 9854602 9855053 -152744877 + MLT1F LTR MaLR 5 539 -3 501 174 83 38 chrX 9855054 9855186 -152744744 - L1MC5 LINE L1 -789 7172 7035 307 238 65 89 chrX 9855303 9855517 -152744413 - L1ME LINE L1 -312 5809 5601 224 245 38 0 chrX 9855612 9855665 -152744265 - L2 LINE L2 0 3313 3259 278 250 57 11 chrX 9856389 9856477 -152743453 - L1ME4a LINE L1 -36 6085 5994 2928 116 34 27 chrX 9857148 9857622 -152742308 - L1MA7 LINE L1 0 6291 5815 1258 90 56 0 chrX 9857623 9857801 -152742129 + L1M2 LINE L1 5564 5751 -540 213 263 197 26 chrX 9858304 9858456 -152741474 - MIR SINE MIR -57 205 28 611 230 68 75 chrX 9858480 9858745 -152741185 + ORSL DNA AcHobo 13 275 0 241 379 46 0 chrX 9859129 9859216 -152740714 - MIR SINE MIR -85 123 33 391 293 98 10 chrX 9860098 9860291 -152739639 + MIR SINE MIR 1 217 -45 1157 196 48 0 chrX 9860858 9861067 -152738863 - MER20 DNA MER1_type 0 219 1 2087 133 3 13 chrX 9861324 9861626 -152738304 + AluSx SINE Alu 1 299 -13 203 100 0 50 chrX 9861656 9861696 -152738234 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 25 0 0 0 chrX 9862476 9862501 -152737429 + AT_rich Low_complexity Low_complexity 1 25 0 1825 172 0 3 chrX 9863068 9863370 -152736560 + AluJo SINE Alu 1 301 -11 234 118 0 0 chrX 9864267 9864301 -152735629 - MER3 DNA MER1_type -160 49 16 2870 217 40 17 chrX 9864345 9865328 -152734602 - L1ME4a LINE L1 -167 5997 4997 405 0 0 0 chrX 9865855 9865900 -152734030 + (TC)n Simple_repeat Simple_repeat 2 46 0 2385 121 14 93 chrX 9866071 9866500 -152733430 - MLT2C1 LTR ERVL -2 395 1 786 326 61 22 chrX 9866891 9867253 -152732677 + L2 LINE L2 2300 2675 -639 25 31 0 0 chrX 9868076 9868108 -152731822 + AT_rich Low_complexity Low_complexity 1 32 0 415 331 58 0 chrX 9868649 9868821 -152731109 - MIR SINE MIR -64 198 17 2730 23 0 0 chrX 9869309 9869608 -152730322 - L1PA2 LINE L1 0 6155 5857 2781 188 90 2 chrX 9869670 9870191 -152729739 + MLT1F1 LTR MaLR 1 567 0 2104 138 0 0 chrX 9870710 9871001 -152728929 - AluSx SINE Alu -21 291 1 427 198 198 64 chrX 9871023 9871180 -152728750 + MER5B DNA MER1_type 1 178 0 307 301 88 37 chrX 9871247 9871322 -152728608 + MIR3 SINE MIR 65 135 -73 749 153 68 74 chrX 9871322 9871498 -152728432 - MER5B DNA MER1_type 0 178 4 307 301 88 37 chrX 9871498 9871558 -152728372 + MIR3 SINE MIR 135 207 -1 2795 79 3 8 chrX 9871818 9872184 -152727746 - THE1B LTR MaLR 0 364 1 611 121 20 0 chrX 9872705 9872804 -152727126 - MER89 LTR ERV1 0 559 459 2176 159 22 84 chrX 9873151 9873686 -152726244 + MLT1D LTR MaLR 4 505 0 2320 90 30 0 chrX 9873981 9874281 -152725649 + AluSg SINE Alu 1 309 -1 1173 204 32 53 chrX 9874560 9874905 -152725025 - MSTC LTR MaLR 0 428 1 25 65 0 0 chrX 9874915 9874961 -152724969 + AT_rich Low_complexity Low_complexity 1 46 0 543 291 50 6 chrX 9875244 9875423 -152724507 + MIR SINE MIR 21 207 -55 617 187 159 0 chrX 9875428 9875610 -152724320 + MER5C DNA MER1_type 113 323 -1 339 239 141 0 chrX 9875618 9875710 -152724220 + MER58A DNA MER1_type 1 105 -2 1261 180 90 37 chrX 9875711 9876034 -152723896 - MER2 DNA MER2_type -2 343 4 587 219 0 47 chrX 9876037 9876165 -152723765 + MER58A DNA MER1_type 103 224 0 * 688 294 25 0 chrX 9876165 9876367 -152723563 + LTR16C LTR ERVL 276 482 -9 1700 211 17 42 chrX 9876370 9876772 -152723158 + MSTD LTR MaLR 3 394 -2 33 0 0 0 chrX 9878243 9878276 -152721654 + AT_rich Low_complexity Low_complexity 1 33 0 245 304 230 6 chrX 9878286 9878447 -152721483 - MIR SINE MIR -8 254 58 1718 217 9 0 chrX 9878505 9878841 -152721089 - MER58B DNA MER1_type -2 339 1 721 292 142 0 chrX 9879124 9879350 -152720580 - L2 LINE L2 -890 2424 2135 1115 198 28 0 chrX 9879350 9879562 -152720368 - MER20 DNA MER1_type 0 219 2 721 292 142 0 chrX 9879562 9879667 -152720263 - L2 LINE L2 -1179 2135 2046 432 0 0 0 chrX 9880145 9880193 -152719737 + (TG)n Simple_repeat Simple_repeat 1 48 0 232 184 79 53 chrX 9880427 9880503 -152719427 + MIR SINE MIR 122 199 -63 972 211 29 61 chrX 9880543 9880823 -152719107 + L1MD2 LINE L1 6072 6342 -17 262 126 78 0 chrX 9882017 9882120 -152717810 + (TA)n Simple_repeat Simple_repeat 1 111 0 535 305 54 69 chrX 9882829 9883252 -152716678 - MLT1J LTR MaLR -94 417 1 319 261 36 18 chrX 9883284 9883395 -152716535 + MLT1J LTR MaLR 399 511 0 369 299 27 54 chrX 9883453 9883677 -152716253 - MER102b DNA MER1_type 0 341 124 1236 203 11 89 chrX 9883869 9884219 -152715711 - MLT2B1 LTR ERVL -197 323 1 942 100 0 0 chrX 9884398 9884528 -152715402 + L1PA16 LINE L1 6027 6156 -10 23 54 0 0 chrX 9885561 9885598 -152714332 + AT_rich Low_complexity Low_complexity 1 37 0 236 326 27 62 chrX 9885920 9886144 -152713786 + HAL1 LINE L1 2231 2446 -61 280 339 204 17 chrX 9886199 9886798 -152713132 - L2 LINE L2 -692 2622 1912 346 390 58 25 chrX 9887208 9887482 -152712448 + L3 LINE CR1 1289 1571 -6 302 315 19 19 chrX 9887502 9887610 -152712320 - L3 LINE CR1 -1 1576 1469 5272 125 29 14 chrX 9887629 9888483 -152711447 - L1MC1 LINE L1 -6 6327 5461 711 249 49 53 chrX 9888697 9889042 -152710888 + MLT1I LTR MaLR 67 408 -1 190 331 86 60 chrX 9889443 9889594 -152710336 - L3 LINE CR1 -199 1378 1224 233 247 22 45 chrX 9890718 9890807 -152709123 + CT-rich Low_complexity Low_complexity 3 89 0 290 210 16 0 chrX 9890902 9890964 -152708966 + MER68 LTR ERV1 1 63 -499 811 271 116 34 chrX 9891020 9891374 -152708556 + MER68 LTR ERV1 180 562 0 227 200 0 0 chrX 9891528 9891563 -152708367 - L2 LINE L2 -28 3244 3210 * 420 211 119 9 chrX 9891533 9891642 -152708288 - MIR SINE MIR -27 235 115 252 303 134 25 chrX 9891692 9891811 -152708119 - L2 LINE L2 -5 3267 3136 213 291 18 0 chrX 9892687 9892742 -152707188 - MIR3 SINE MIR -18 190 135 3009 236 52 58 chrX 9893638 9894856 -152705074 - L1ME1 LINE L1 -67 6910 5747 185 0 40 0 chrX 9894856 9894881 -152705049 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 3009 236 52 58 chrX 9894881 9895639 -152704291 - L1ME1 LINE L1 -1230 5747 4986 6151 182 25 23 chrX 9896135 9898278 -152701652 + L1MB2 LINE L1 4019 6164 -7 493 246 87 61 chrX 9898354 9898618 -152701312 - L1ME1 LINE L1 -6584 275 5 22 35 0 0 chrX 9899238 9899267 -152700663 + AT_rich Low_complexity Low_complexity 1 29 0 908 138 0 0 chrX 9899634 9899772 -152700158 + AluJb SINE Alu 175 312 0 406 254 0 9 chrX 9899774 9899884 -152700046 - L1M4 LINE L1 -3353 2793 2685 2958 184 24 11 chrX 9899893 9900514 -152699416 + L1PA13 LINE L1 2323 2951 -3195 13246 163 16 0 chrX 9900617 9901453 -152698477 + L1PA13 LINE L1 2870 3691 -2472 2105 133 50 8 chrX 9901453 9901813 -152698117 - THE1C LTR MaLR 0 375 1 10249 99 30 48 chrX 9901813 9903422 -152696508 - THE1C-int LTR MaLR 0 1580 1 1903 145 83 14 chrX 9903422 9903773 -152696157 - THE1C LTR MaLR 0 375 1 13246 163 16 0 chrX 9903773 9906201 -152693729 + L1PA13 LINE L1 3690 6158 -5 28 29 0 0 chrX 9906239 9906274 -152693656 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chrX 9906648 9906671 -152693259 + AT_rich Low_complexity Low_complexity 1 23 0 248 0 31 0 chrX 9907212 9907244 -152692686 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 27 49 0 0 chrX 9908480 9908521 -152691409 + AT_rich Low_complexity Low_complexity 1 41 0 2686 107 70 7 chrX 9909293 9909696 -152690234 - MSTA LTR MaLR 0 428 1 396 335 138 12 chrX 9909993 9910247 -152689683 + LTR16B LTR ERVL 2 287 -177 204 40 0 0 chrX 9910321 9910346 -152689584 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 198 0 0 0 chrX 9910450 9910472 -152689458 + (T)n Simple_repeat Simple_repeat 1 22 0 3060 27 0 64 chrX 9910488 9910896 -152689034 - L1PA4 LINE L1 -4 6151 5770 452 353 63 9 chrX 9912983 9913204 -152686726 - MIR SINE MIR -15 247 15 951 183 28 5 chrX 9913429 9913642 -152686288 - LTR54 LTR ERV1 0 510 293 865 132 66 60 chrX 9913659 9913841 -152686089 - LTR54 LTR ERV1 -327 183 1 1002 216 39 26 chrX 9914149 9914459 -152685471 - Charlie7 DNA MER1_type -1751 861 548 244 208 195 0 chrX 9914529 9914606 -152685324 - MER112 DNA MER1_type -96 164 73 1372 261 94 24 chrX 9914702 9915211 -152684719 - Charlie7 DNA MER1_type -2062 550 6 245 374 176 4 chrX 9915248 9915486 -152684444 + L2 LINE L2 2818 3096 -217 438 152 38 13 chrX 9915636 9915715 -152684215 + MER58B DNA MER1_type 260 340 -1 310 283 40 20 chrX 9915718 9915817 -152684113 + MIR3 SINE MIR 91 191 -17 995 139 11 0 chrX 9916163 9916343 -152683587 + L1MA7 LINE L1 6108 6289 -2 249 254 17 0 chrX 9916848 9916907 -152683023 - L2 LINE L2 -5 3267 3208 338 321 55 0 chrX 9917530 9917639 -152682291 + MIR3 SINE MIR 87 201 -7 318 361 33 0 chrX 9917826 9917948 -152681982 + LTR16C LTR ERVL 154 279 -212 445 153 13 4 chrX 9917999 9918085 -152681845 + LTR16C LTR ERVL 372 490 -1 590 153 90 45 chrX 9918182 9918359 -152681571 + MER53 DNA DNA 1 185 -4 307 260 52 0 chrX 9918681 9918758 -152681172 + L2 LINE L2 3231 3311 -2 1191 149 0 3 chrX 9919612 9919831 -152680099 + L1M3 LINE L1 5479 5694 -489 2238 186 94 73 chrX 9919898 9920663 -152679267 + L1M4 LINE L1 4053 4833 -1313 951 128 7 0 chrX 9920663 9920811 -152679119 + AluSp/q SINE Alu 157 305 -8 1459 114 0 92 chrX 9920813 9920901 -152679029 - MER2 DNA MER2_type -79 266 172 1805 158 7 3 chrX 9920901 9921193 -152678737 - AluJb SINE Alu -19 293 1 1459 114 0 92 chrX 9921193 9921376 -152678554 - MER2 DNA MER2_type -173 172 20 203 182 0 159 chrX 9921981 9922069 -152677861 + L2 LINE L2 3171 3244 -69 2239 34 4 0 chrX 9922613 9922877 -152677053 - AluY SINE Alu -6 305 41 1266 160 33 0 chrX 9923586 9923798 -152676132 + MER20 DNA MER1_type 1 219 0 30 27 0 0 chrX 9926393 9926430 -152673500 + AT_rich Low_complexity Low_complexity 1 37 0 615 325 48 0 chrX 9926872 9927081 -152672849 + MIR SINE MIR 13 231 -31 2260 129 0 0 chrX 9927382 9927684 -152672246 - AluSx SINE Alu -10 302 1 186 224 0 41 chrX 9927740 9927789 -152672141 - L2 LINE L2 -5 3308 3262 544 154 0 108 chrX 9927807 9927937 -152671993 + L1ME LINE L1 5428 5543 -621 274 301 0 12 chrX 9928066 9928149 -152671781 + CT-rich Low_complexity Low_complexity 1 82 0 445 300 114 71 chrX 9928154 9928504 -152671426 - L1M4 LINE L1 -5636 906 542 261 273 77 16 chrX 9928775 9928958 -152670972 - L1M4 LINE L1 -6333 209 16 3469 235 57 13 chrX 9928972 9930246 -152669684 - L1M4 LINE L1 -2304 3842 2512 1854 159 21 7 chrX 9930528 9930818 -152669112 - AluSx SINE Alu -18 294 1 1080 178 89 0 chrX 9931143 9931345 -152668585 - MER58A DNA MER1_type -4 220 1 284 276 46 79 chrX 9933036 9933188 -152666742 - MIR SINE MIR -96 166 20 313 281 131 44 chrX 9933414 9933574 -152666356 + MER5B DNA MER1_type 5 178 0 204 40 0 0 chrX 9934384 9934409 -152665521 + (T)n Simple_repeat Simple_repeat 1 25 0 236 186 0 27 chrX 9934458 9934541 -152665389 - Charlie8 DNA MER1_type -2 2415 1347 225 270 111 0 chrX 9934591 9934654 -152665276 - Charlie8 DNA MER1_type -2347 70 1 1081 154 72 0 chrX 9935632 9935827 -152664103 - MER3 DNA MER1_type 0 209 1 840 265 51 9 chrX 9935848 9936063 -152663867 + MIR SINE MIR 31 254 -8 423 337 163 22 chrX 9936103 9936664 -152663266 - L2 LINE L2 -186 3086 2460 4952 130 19 5 chrX 9937167 9938004 -152661926 + L1PA16 LINE L1 5317 6165 -1 2338 96 7 0 chrX 9938425 9938727 -152661203 + AluSx SINE Alu 1 304 -8 572 242 25 13 chrX 9939244 9939401 -152660529 - MER20 DNA MER1_type -60 159 1 893 236 116 95 chrX 9939793 9940352 -152659578 + MLT1L LTR MaLR 1 571 -44 215 346 68 45 chrX 9940501 9940634 -152659296 - L2 LINE L2 -16 3256 3121 413 269 192 0 chrX 9940767 9940975 -152658955 - L1ME1 LINE L1 -5 6161 5914 2284 101 0 0 chrX 9940992 9941323 -152658607 - AluY SINE Alu 0 331 1 1517 211 43 133 chrX 9941326 9942271 -152657659 - L1M4c LINE L1 -4728 2231 1356 1698 194 28 14 chrX 9942271 9942631 -152657299 - MLT1A1 LTR MaLR 0 365 1 1517 211 43 133 chrX 9942631 9942691 -152657239 - L1M4c LINE L1 -5603 1356 1292 234 209 60 0 chrX 9942799 9942866 -152657064 + CT-rich Low_complexity Low_complexity 3 73 0 16419 26 0 0 chrX 9943152 9945867 -152654063 + L1PA3 LINE L1 3441 6155 0 26 30 0 0 chrX 9945867 9945900 -152654030 + AT_rich Low_complexity Low_complexity 1 33 0 247 236 16 87 chrX 9945934 9946061 -152653869 - L1M4c LINE L1 -5477 1382 1265 5799 103 4 52 chrX 9946235 9947249 -152652681 - L1P LINE L1 -1518 4628 3664 484 246 35 123 chrX 9947318 9947516 -152652414 - L1M4 LINE L1 -4424 2401 2187 1313 228 54 7 chrX 9947516 9947814 -152652116 - AluJo SINE Alu 0 312 1 484 246 35 123 chrX 9947814 9947938 -152651992 - L1M4 LINE L1 -4638 2187 2130 2004 137 0 44 chrX 9947938 9948259 -152651671 - AluSx SINE Alu -5 307 1 484 246 35 123 chrX 9948259 9948399 -152651531 - L1M4 LINE L1 -4695 2130 1979 335 241 0 0 chrX 9948400 9948483 -152651447 + MLT2B2 LTR ERVL 1 83 -432 235 146 0 0 chrX 9948475 9948516 -152651414 + MLT2B1 LTR ERVL 473 513 -7 * 1177 258 90 16 chrX 9948519 9949178 -152650752 - L1M4 LINE L1 -4815 1831 1112 2253 107 65 0 chrX 9949659 9949997 -152649933 + MER46B DNA MER2_type 2 236 0 525 229 34 0 chrX 9950215 9950333 -152649597 - L2 LINE L2 -4 3309 3188 291 288 111 26 chrX 9950324 9950477 -152649453 - L2 LINE L2 -936 2378 2213 * 195 184 0 0 chrX 9951670 9951708 -152648222 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 212 194 48 0 chrX 9951740 9951802 -152648128 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 31 44 0 0 chrX 9951910 9951955 -152647975 + AT_rich Low_complexity Low_complexity 1 45 0 3027 126 22 38 chrX 9952178 9952726 -152647204 + L1MB2 LINE L1 5629 6167 -4 24 0 0 0 chrX 9954007 9954031 -152645899 + AT_rich Low_complexity Low_complexity 1 24 0 501 259 229 34 chrX 9954062 9954298 -152645632 + L2 LINE L2 2921 3202 -111 2465 122 3 31 chrX 9954503 9954887 -152645043 + MER83C LTR ERV1 1 373 0 1076 140 45 18 chrX 9955852 9956073 -152643857 - Tigger1 DNA MER2_type 0 2418 2192 822 120 6 84 chrX 9956067 9956234 -152643696 - Tigger1 DNA MER2_type -2264 154 1 * 372 210 12 12 chrX 9956480 9956561 -152643369 - Tigger5 DNA MER2_type -1 2322 2242 333 175 0 0 chrX 9956557 9956614 -152643316 + Tigger5 DNA MER2_type 2264 2320 -3 * 731 257 103 94 chrX 9956818 9957362 -152642568 - MLT1H LTR MaLR 0 549 1 269 380 9 9 chrX 9957369 9957477 -152642453 - MIR3 SINE MIR -25 183 76 525 192 30 0 chrX 9957495 9957594 -152642336 + MER5A DNA MER1_type 11 112 -77 638 259 20 73 chrX 9957750 9957997 -152641933 - MIR SINE MIR -14 248 15 657 239 6 28 chrX 9958895 9959071 -152640859 + MIR SINE MIR 89 260 -2 461 194 82 0 chrX 9959086 9959184 -152640746 + L2 LINE L2 3208 3313 0 214 227 45 15 chrX 9959288 9959354 -152640576 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 1315 193 94 12 chrX 9960282 9960613 -152639317 - L1MD3 LINE L1 -3 7992 7635 210 333 13 0 chrX 9960960 9961038 -152638892 - MIR SINE MIR -3 259 181 352 286 20 27 chrX 9961038 9961185 -152638745 + MLT2F LTR ERVL 1 146 -517 776 169 5 65 chrX 9961186 9961370 -152638560 + MLT1E3 LTR MaLR 50 222 -402 765 230 43 95 chrX 9961201 9961570 -152638360 + MLT2C1 LTR ERVL 44 393 -4 * 485 289 82 6 chrX 9961581 9961740 -152638190 - MIR SINE MIR -90 172 2 606 233 80 6 chrX 9961814 9961977 -152637953 + MER5B DNA MER1_type 1 175 -3 411 218 20 30 chrX 9962037 9962138 -152637792 - MER5A DNA MER1_type -75 114 15 972 189 18 28 chrX 9962447 9962664 -152637266 - MER20 DNA MER1_type -4 215 1 2133 182 0 11 chrX 9963627 9963996 -152635934 + MLT1A1 LTR MaLR 1 365 0 536 204 154 49 chrX 9964124 9964286 -152635644 - MER5A DNA MER1_type -2 187 9 727 162 35 53 chrX 9964471 9964643 -152635287 + L1ME2 LINE L1 5840 6008 -158 574 236 48 24 chrX 9964660 9964868 -152635062 + L1MC5 LINE L1 7698 7910 -51 855 278 111 62 chrX 9964973 9965634 -152634296 - L2 LINE L2 0 3313 2632 239 222 0 0 chrX 9965770 9965815 -152634115 + MER5A DNA MER1_type 9 53 -136 754 137 7 0 chrX 9965852 9965991 -152633939 + L1MA7 LINE L1 6150 6289 -2 799 238 22 9 chrX 9966007 9966230 -152633700 - L2 LINE L2 -685 2629 2404 420 227 0 0 chrX 9966441 9966560 -152633370 + A-rich Low_complexity Low_complexity 1 119 0 343 236 102 74 chrX 9966567 9966783 -152633147 + L1M4 LINE L1 3072 3293 -2853 38 0 0 0 chrX 9966787 9966825 -152633105 + AT_rich Low_complexity Low_complexity 1 38 0 7000 37 1 0 chrX 9966825 9968316 -152631614 - L1PA3 LINE L1 -3 6152 4676 588 212 19 9 chrX 9968343 9968560 -152631370 + C-rich Low_complexity Low_complexity 1 219 0 3615 73 2 0 chrX 9969278 9969800 -152630130 - L1P LINE L1 -4670 1476 954 5936 81 17 17 chrX 9970750 9971732 -152628198 - L1PB2 LINE L1 -4 6147 5164 902 196 46 95 chrX 9971867 9972299 -152627631 - MLT1A2 LTR MaLR 0 374 2 588 302 80 9 chrX 9972478 9972703 -152627227 - L2 LINE L2 -656 2658 2418 1690 176 10 10 chrX 9973422 9973723 -152626207 - AluJo SINE Alu -11 301 1 180 311 243 0 chrX 9975413 9975516 -152624414 - MIR SINE MIR -6 256 129 228 234 13 65 chrX 9975771 9975848 -152624082 - MLT1J2 LTR MaLR -6 444 372 2215 158 31 23 chrX 9975947 9976334 -152623596 - MLT1B LTR MaLR 0 390 1 778 264 65 55 chrX 9976370 9976662 -152623268 + MLT1I LTR MaLR 115 409 0 306 271 31 10 chrX 9976825 9976921 -152623009 - MLT1J1 LTR MaLR -266 180 83 2917 94 22 2 chrX 9976921 9977327 -152622603 - MSTA LTR MaLR 0 428 15 22125 169 45 13 chrX 9977328 9983032 -152616898 + L1PA13 LINE L1 132 6137 -677 2541 97 58 17 chrX 9983032 9983392 -152616538 - THE1C LTR MaLR 0 375 1 22125 169 45 13 chrX 9983392 9984093 -152615837 + L1PA13 LINE L1 6137 6814 0 266 303 42 35 chrX 9984507 9984649 -152615281 - L2 LINE L2 -188 3084 2942 2449 91 0 0 chrX 9984650 9984959 -152614971 + AluSx SINE Alu 1 309 -3 920 267 123 35 chrX 9985088 9985511 -152614419 + MLT1C LTR MaLR 1 460 -7 1085 268 104 35 chrX 9986064 9986572 -152613358 - MLT1H1 LTR MaLR -7 548 6 202 222 0 22 chrX 9986641 9986686 -152613244 + L2 LINE L2 3229 3272 0 432 214 298 35 chrX 9987576 9987865 -152612065 + L2 LINE L2 2935 3299 -14 486 314 0 0 chrX 9989514 9989632 -152610298 + L2 LINE L2 3153 3270 -2 44127 35 22 2 chrX 9989913 9996139 -152603791 - L1HS LINE L1 0 6155 1 944 106 0 57 chrX 9997057 9997198 -152602732 - FLAM_A SINE Alu 0 133 1 1070 172 32 93 chrX 9997517 9997796 -152602134 - L1MB5 LINE L1 0 6174 5913 21 36 0 0 chrX 9998188 9998216 -152601714 + AT_rich Low_complexity Low_complexity 1 28 0 1691 171 27 24 chrX 9998216 9998544 -152601386 - MSTD LTR MaLR -51 345 17 505 248 8 8 chrX 9998611 9998732 -152601198 - HAL1 LINE L1 -2119 388 268 804 185 0 101 chrX 9998742 9998931 -152600999 - MER58B DNA MER1_type 0 341 172 375 236 99 43 chrX 9998948 9999109 -152600821 - HAL1 LINE L1 -2333 174 5 698 259 24 0 chrX 9999791 9999961 -152599969 + MER5B DNA MER1_type 1 174 -4 638 212 33 54 chrX 10000177 10000303 -152599627 - MIR SINE MIR -38 224 102 2668 157 49 2 chrX 10000303 10000710 -152599220 - MSTB LTR MaLR 0 426 1 638 212 33 54 chrX 10000710 10000767 -152599163 - MIR SINE MIR -160 102 45 538 271 59 25 chrX 10000889 10001125 -152598805 + MER46C DNA MER2_type 1 244 -94 1096 243 140 34 chrX 10001139 10001380 -152598550 + MLT1I LTR MaLR 14 307 -102 3273 173 12 12 chrX 10001380 10001895 -152598035 + MLT2B2 LTR ERVL 1 515 0 1096 243 140 34 chrX 10001895 10002011 -152597919 + MLT1I LTR MaLR 307 409 0 407 205 26 0 chrX 10002024 10002102 -152597828 + MER46C DNA MER2_type 258 337 -1 229 286 214 10 chrX 10002214 10002312 -152597618 + L2 LINE L2 3150 3267 -5 2413 78 3 13 chrX 10002629 10002935 -152596995 + AluSp SINE Alu 1 303 -10 1696 202 65 28 chrX 10003020 10003372 -152596558 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chrX 10003634 10003660 -152596270 + AT_rich Low_complexity Low_complexity 1 26 0 226 211 0 0 chrX 10004380 10004418 -152595512 + (TG)n Simple_repeat Simple_repeat 2 39 0 1371 166 43 22 chrX 10004723 10004813 -152595117 - L1MA9 LINE L1 -35 6277 6190 2221 137 24 34 chrX 10004813 10005192 -152594738 + THE1C LTR MaLR 1 375 0 1371 166 43 22 chrX 10005192 10005221 -152594709 - L1MA9 LINE L1 -122 6190 6163 180 0 0 0 chrX 10005221 10005241 -152594689 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1371 166 43 22 chrX 10005241 10005397 -152594533 - L1MA9 LINE L1 -149 6163 5995 270 105 193 0 chrX 10005425 10005482 -152594448 - L1MB7 LINE L1 0 6184 6117 * 5754 97 10 4 chrX 10005472 10005600 -152594330 + L1PA13 LINE L1 5357 5483 -680 2330 118 0 3 chrX 10005600 10005914 -152594016 + AluSq SINE Alu 1 313 0 5754 97 10 4 chrX 10005914 10006582 -152593348 + L1PA13 LINE L1 5483 6158 -5 1885 155 0 7 chrX 10006582 10006873 -152593057 + AluJb SINE Alu 7 295 -17 298 157 0 86 chrX 10006890 10006960 -152592970 - L1MB7 LINE L1 -34 6150 6087 669 236 91 0 chrX 10007644 10007809 -152592121 + MER5A DNA MER1_type 10 189 0 1111 169 86 79 chrX 10008306 10008584 -152591346 - MER92B LTR ERV1 0 636 357 1206 177 22 26 chrX 10008617 10008849 -152591081 - MER92B LTR ERV1 -372 264 34 2046 119 53 87 chrX 10009762 10010140 -152589790 - MLT1A1 LTR MaLR 0 365 1 790 185 0 22 chrX 10010170 10010305 -152589625 + FLAM_A SINE Alu 1 132 -1 216 0 0 0 chrX 10010308 10010332 -152589598 + (TATG)n Simple_repeat Simple_repeat 4 27 0 2072 49 46 11 chrX 10010332 10010595 -152589335 + AluY SINE Alu 39 310 -1 649 131 29 36 chrX 10011955 10012092 -152587838 - LTR37A LTR ERV1 0 426 291 1424 150 4 34 chrX 10012102 10012336 -152587594 + AluJo SINE Alu 3 229 -83 261 0 0 0 chrX 10012350 10012379 -152587551 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 885 191 85 50 chrX 10012381 10012663 -152587267 - LTR37A LTR ERV1 -132 294 3 266 310 81 0 chrX 10012895 10012982 -152586948 - MER5A DNA MER1_type 0 189 96 188 333 67 0 chrX 10012917 10012992 -152586938 + MER5A DNA MER1_type 37 116 -73 * 1467 120 113 22 chrX 10013132 10013539 -152586391 - LTR54 LTR ERV1 0 510 1 4730 123 44 20 chrX 10013979 10014684 -152585246 - MER72 LTR ERV1 0 722 1 568 216 82 69 chrX 10016695 10016926 -152583004 - LTR50 LTR ERVL -36 759 526 238 204 0 0 chrX 10016927 10016971 -152582959 - MLT1A1 LTR MaLR 0 374 331 * 585 139 5 9 chrX 10016966 10017063 -152582867 + MLT1A1 LTR MaLR 253 339 -26 312 244 39 13 chrX 10017056 10017134 -152582796 - MLT1A1 LTR MaLR -119 246 167 * 898 212 0 22 chrX 10017172 10017351 -152582579 - MLT1A1 LTR MaLR -190 175 1 949 205 82 45 chrX 10017413 10017681 -152582249 - LTR50 LTR ERVL -517 278 1 215 301 12 12 chrX 10018700 10018783 -152581147 - MIR3 SINE MIR -3 205 123 296 211 33 125 chrX 10018849 10018973 -152580957 + MER5B DNA MER1_type 4 113 -65 2087 73 59 4 chrX 10018973 10019268 -152580662 - AluY SINE Alu 0 311 1 296 211 33 125 chrX 10019268 10019295 -152580635 + MER5B DNA MER1_type 113 141 -37 2358 171 47 64 chrX 10019537 10020051 -152579879 - MLT1D LTR MaLR 0 505 1 2006 192 6 3 chrX 10020992 10021341 -152578589 + MLT1A1 LTR MaLR 1 350 -15 261 0 0 0 chrX 10021347 10021376 -152578554 + (CAT)n Simple_repeat Simple_repeat 2 30 0 786 129 0 0 chrX 10021952 10022053 -152577877 - FLAM_A SINE Alu -20 122 22 207 0 0 0 chrX 10022559 10022582 -152577348 + (TG)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chrX 10022582 10022603 -152577327 + (T)n Simple_repeat Simple_repeat 1 21 0 2669 166 29 5 chrX 10023157 10023603 -152576327 - LTR32 LTR ERVL 0 471 15 526 103 0 39 chrX 10023584 10023662 -152576268 - LTR32 LTR ERVL -384 87 13 * 497 237 42 17 chrX 10023662 10023780 -152576150 - MIR SINE MIR -141 121 1 369 268 49 32 chrX 10026254 10026377 -152573553 + L2 LINE L2 3148 3272 0 292 224 75 60 chrX 10026591 10026725 -152573205 - MER104 DNA Tc2 -44 136 1 311 262 1 3 chrX 10026940 10027042 -152572888 + MLT1K LTR MaLR 495 612 -3 596 287 118 21 chrX 10027357 10027594 -152572336 + MIR SINE MIR 1 260 -2 379 221 262 13 chrX 10028238 10028387 -152571543 + MER5A DNA MER1_type 4 189 0 2587 137 26 12 chrX 10028956 10029381 -152570549 + MSTB1 LTR MaLR 2 432 0 267 291 146 46 chrX 10030160 10030311 -152569619 + MIR SINE MIR 84 249 -13 2621 112 16 66 chrX 10032307 10032865 -152567065 - MER4E LTR ERV1 0 766 71 2564 78 0 0 chrX 10032865 10033174 -152566756 + AluY SINE Alu 1 309 -2 2621 112 16 66 chrX 10033174 10033242 -152566688 - MER4E LTR ERV1 -695 71 1 286 263 45 57 chrX 10033877 10034124 -152565806 - L1ME3A LINE L1 -90 6063 5820 752 281 84 5 chrX 10034222 10034822 -152565108 - L1ME3A LINE L1 -516 5629 4982 22 35 0 0 chrX 10034960 10034989 -152564941 + AT_rich Low_complexity Low_complexity 1 29 0 350 279 94 25 chrX 10034995 10035433 -152564497 - L1ME3A LINE L1 -2707 3422 2955 411 246 0 9 chrX 10035447 10035557 -152564373 - L1ME3A LINE L1 0 6170 6062 366 239 98 43 chrX 10035564 10035727 -152564203 - L1ME3A LINE L1 -3170 2959 2788 753 248 76 14 chrX 10035742 10035952 -152563978 + MER58A DNA MER1_type 1 223 -1 326 266 84 58 chrX 10036006 10036352 -152563578 - L1ME3A LINE L1 -3462 2667 2313 742 275 77 50 chrX 10036889 10038120 -152561810 - L1MEd LINE L1 -4653 1657 351 323 268 45 45 chrX 10038272 10038429 -152561501 - L1MEd LINE L1 -5932 187 31 192 295 84 105 chrX 10038474 10038569 -152561361 + L2 LINE L2 3142 3234 -38 6220 94 19 48 chrX 10038574 10039562 -152560368 - HSMAR2 DNA Mariner 0 1302 343 1048 174 28 0 chrX 10039562 10039858 -152560072 + L1M3 LINE L1 5188 5490 -690 613 136 32 24 chrX 10039859 10039984 -152559946 + L1MB5 LINE L1 13 138 -7427 * 6667 169 12 1 chrX 10039977 10041116 -152558814 + L1MB5 LINE L1 701 1852 -5713 * 12124 153 13 23 chrX 10041112 10045310 -152554620 + L1MB5 LINE L1 4269 7723 0 1383 290 58 46 chrX 10045526 10046112 -152553818 - MLT1E LTR MaLR 0 593 1 243 79 0 0 chrX 10047808 10047846 -152552084 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1045 208 19 14 chrX 10048142 10048358 -152551572 - MER20 DNA MER1_type -2 217 1 222 37 0 0 chrX 10048393 10048420 -152551510 + (CAAAAA)n Simple_repeat Simple_repeat 6 32 0 1143 160 23 23 chrX 10048871 10049090 -152550840 + MER20 DNA MER1_type 1 219 0 22 56 0 0 chrX 10050443 10050479 -152549451 + AT_rich Low_complexity Low_complexity 1 36 0 244 67 0 0 chrX 10051493 10051523 -152548407 + L2 LINE L2 3261 3290 -23 236 143 71 0 chrX 10051523 10051535 -152548395 + MIR SINE MIR 216 260 -2 187 405 47 0 chrX 10051977 10052125 -152547805 - L2 LINE L2 -552 2762 2608 308 245 108 20 chrX 10052259 10052361 -152547569 - MLT1G1 LTR MaLR -16 579 469 292 248 69 10 chrX 10052552 10052653 -152547277 - MLT1I LTR MaLR -264 145 39 239 329 52 99 chrX 10055403 10055616 -152544314 + L2 LINE L2 2916 3118 -154 632 277 19 14 chrX 10055771 10055984 -152543946 + MER46C DNA MER2_type 108 321 -17 488 211 32 0 chrX 10057402 10057497 -152542433 + L2 LINE L2 3215 3312 -1 270 338 25 0 chrX 10057551 10057631 -152542299 - L2 LINE L2 0 3272 3191 271 310 85 16 chrX 10058052 10058181 -152541749 + MIR SINE MIR 95 232 -30 309 26 0 0 chrX 10058211 10058249 -152541681 + (TG)n Simple_repeat Simple_repeat 2 39 0 1821 165 32 0 chrX 10058250 10058529 -152541401 - AluSx SINE Alu -24 288 1 219 284 68 27 chrX 10058857 10058931 -152540999 - MER5B DNA MER1_type -3 175 99 946 193 6 17 chrX 10059990 10060171 -152539759 - MER5A DNA MER1_type -1 188 10 620 280 48 26 chrX 10061783 10062121 -152537809 + MLT1G1 LTR MaLR 1 350 -192 335 274 0 89 chrX 10063014 10063160 -152536770 - MIR SINE MIR -96 166 34 971 97 51 23 chrX 10063957 10064133 -152535797 + L1MA9 LINE L1 6130 6310 -2 22 80 0 0 chrX 10064689 10064739 -152535191 + AT_rich Low_complexity Low_complexity 1 50 0 361 238 113 39 chrX 10064903 10065053 -152534877 + MIR3 SINE MIR 5 164 -67 24 32 0 0 chrX 10065224 10065255 -152534675 + AT_rich Low_complexity Low_complexity 1 31 0 1020 218 5 14 chrX 10065294 10065514 -152534416 - MER58A DNA MER1_type -3 221 4 197 354 55 37 chrX 10065615 10065779 -152534151 - L2 LINE L2 -216 3056 2890 943 156 104 16 chrX 10066180 10066372 -152533558 - MER3 DNA MER1_type 0 209 1 209 351 37 0 chrX 10066432 10066566 -152533364 + MIR SINE MIR 51 189 -73 1331 169 0 50 chrX 10066682 10066731 -152533199 - L1M4 LINE L1 -1926 4220 4170 2479 58 7 0 chrX 10066731 10067023 -152532907 - AluSc SINE Alu -15 294 1 1331 169 0 50 chrX 10067023 10067275 -152532655 - L1M4 LINE L1 -1976 4170 3934 21 36 0 0 chrX 10068809 10068837 -152531093 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chrX 10069521 10069545 -152530385 + (TG)n Simple_repeat Simple_repeat 2 25 0 181 314 118 0 chrX 10070139 10070190 -152529740 + L2 LINE L2 2961 3017 -255 281 250 0 48 chrX 10070423 10070507 -152529423 + MLT1J LTR MaLR 99 178 -333 1876 164 30 87 chrX 10072910 10073228 -152526702 - MLT1C LTR MaLR 0 467 185 2277 109 3 3 chrX 10073228 10073541 -152526389 - AluSq SINE Alu 0 313 1 1876 164 30 87 chrX 10073541 10073717 -152526213 - MLT1C LTR MaLR -282 185 1 772 275 48 13 chrX 10073725 10074041 -152525889 - MER46C DNA MER2_type -9 329 3 227 31 31 0 chrX 10074218 10074250 -152525680 + (TC)n Simple_repeat Simple_repeat 2 34 0 1035 239 27 19 chrX 10074671 10074931 -152524999 - MIR SINE MIR 0 262 1 194 204 0 68 chrX 10075040 10075084 -152524846 + L2 LINE L2 3201 3241 -31 1020 272 69 67 chrX 10075098 10075503 -152524427 - MLT1J2 LTR MaLR -8 442 37 404 316 87 48 chrX 10075545 10075751 -152524179 - L3 LINE CR1 -957 620 407 518 253 24 59 chrX 10076728 10076898 -152523032 + MIR3 SINE MIR 16 179 -29 207 330 143 9 chrX 10076890 10077002 -152522928 + L2 LINE L2 3141 3267 -5 * 214 281 24 12 chrX 10077003 10077085 -152522845 + MIR SINE MIR 180 262 0 338 250 51 80 chrX 10077683 10077794 -152522136 + L2 LINE L2 25 131 -3183 1878 202 3 6 chrX 10077794 10078160 -152521770 + MLT1A1 LTR MaLR 1 365 0 338 250 51 80 chrX 10078160 10078224 -152521706 + L2 LINE L2 131 195 -3119 * 531 273 129 39 chrX 10078196 10078482 -152521448 + L2 LINE L2 2996 3307 -6 211 337 11 11 chrX 10079043 10079132 -152520798 + (TATG)n Simple_repeat Simple_repeat 3 91 0 * 226 308 0 0 chrX 10079095 10079160 -152520770 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 357 239 0 0 chrX 10079161 10079228 -152520702 - MIR SINE MIR -65 143 77 401 257 22 25 chrX 10079612 10079807 -152520123 - L1ME3A LINE L1 -288 5882 5703 798 294 47 60 chrX 10079812 10080261 -152519669 + L2 LINE L2 1938 2380 -934 1659 232 64 50 chrX 10080261 10080833 -152519097 + MLT1F1 LTR MaLR 1 567 0 257 281 309 0 chrX 10080845 10081023 -152518907 + L2 LINE L2 2379 2611 -703 593 337 24 20 chrX 10081746 10081998 -152517932 - L3 LINE CR1 -2 1575 1323 933 236 138 18 chrX 10082808 10083090 -152516840 - MLT1E1 LTR MaLR 0 624 232 6961 139 24 3 chrX 10083134 10084481 -152515449 - L1MC1 LINE L1 -2 6331 4964 1158 221 19 11 chrX 10084513 10084776 -152515154 - MLT1E1 LTR MaLR -389 265 1 206 264 0 0 chrX 10084797 10084850 -152515080 + MIR SINE MIR 103 155 -107 877 185 6 39 chrX 10086335 10086513 -152513417 + MER20 DNA MER1_type 1 172 -47 449 323 200 61 chrX 10086555 10088477 -152511453 - L2 LINE L2 -568 2746 558 2320 78 3 0 chrX 10088493 10088821 -152511109 - AluSp SINE Alu 0 329 1 1155 213 20 38 chrX 10090848 10091191 -152508739 + L1MC4 LINE L1 7264 7600 -442 2418 211 32 69 chrX 10092128 10092399 -152507531 - L1ME1 LINE L1 -61 6916 6637 2317 108 6 6 chrX 10092399 10092751 -152507179 - L1PA13 LINE L1 -1 6162 5811 2418 211 32 69 chrX 10092751 10093191 -152506739 - L1ME1 LINE L1 -340 6637 6231 1011 192 64 18 chrX 10093220 10093501 -152506429 - L1ME1 LINE L1 -855 6102 5809 3067 239 94 37 chrX 10093509 10093802 -152506128 - L1ME1 LINE L1 -2734 4223 3948 980 233 3 110 chrX 10093802 10094137 -152505793 - AluJb SINE Alu -3 299 1 3067 239 94 37 chrX 10094137 10094512 -152505418 - L1ME1 LINE L1 -3009 3948 3596 2231 119 3 0 chrX 10094512 10094824 -152505106 + AluSp SINE Alu 1 313 0 3067 239 94 37 chrX 10094824 10095378 -152504552 - L1ME1 LINE L1 -3361 3596 3075 1844 91 116 11 chrX 10095378 10095653 -152504277 - AluYa8 SINE Alu -6 304 1 3067 239 94 37 chrX 10095653 10097237 -152502693 - L1ME1 LINE L1 -3882 3075 1226 283 302 69 31 chrX 10097320 10097479 -152502451 - L1ME1 LINE L1 -5662 1193 1029 404 280 46 84 chrX 10097685 10098031 -152501899 - L1ME1 LINE L1 -6193 662 20 190 256 23 0 chrX 10098345 10098388 -152501542 - MIR3 SINE MIR -14 194 151 180 261 0 46 chrX 10099372 10099437 -152500493 - L2 LINE L2 -212 3060 2999 1612 193 40 6 chrX 10099783 10100110 -152499820 + MER58B DNA MER1_type 2 339 -2 257 266 147 28 chrX 10100120 10100229 -152499701 - L1MEd LINE L1 -5458 661 540 676 287 11 63 chrX 10100260 10100528 -152499402 - L1MEd LINE L1 -5528 591 338 3275 189 132 12 chrX 10101117 10101874 -152498056 - MER21B LTR ERV1 -1 862 9 237 266 0 0 chrX 10101882 10102025 -152497905 + (TA)n Simple_repeat Simple_repeat 1 143 0 381 266 26 13 chrX 10102121 10102275 -152497655 + L1M4 LINE L1 2894 3049 -3097 5729 158 25 10 chrX 10102323 10104335 -152495595 - L1PA16 LINE L1 -9 6157 4126 586 165 0 0 chrX 10104336 10104427 -152495503 + Tigger3b DNA MER2_type 12 102 -1129 * 5563 121 24 20 chrX 10104425 10105379 -152494551 + Tigger3b DNA MER2_type 274 1231 0 277 125 31 0 chrX 10105396 10105460 -152494470 - L1M4 LINE L1 -2926 3220 3155 811 294 66 28 chrX 10105542 10105936 -152493994 + L1ME3A LINE L1 5540 5948 -222 184 297 47 31 chrX 10106462 10106526 -152493404 - L3b LINE CR1 0 1583 1519 * 188 157 0 157 chrX 10106492 10106543 -152493387 - MIR3 SINE MIR -35 173 131 207 195 24 0 chrX 10106558 10106599 -152493331 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 27 0 0 0 chrX 10106819 10106846 -152493084 + AT_rich Low_complexity Low_complexity 1 27 0 1896 135 0 4 chrX 10107880 10108146 -152491784 + AluSx SINE Alu 1 265 -47 1073 54 11 38 chrX 10108146 10108330 -152491600 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 231 36 0 0 chrX 10108330 10108358 -152491572 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1224 164 127 55 chrX 10108549 10108903 -152491027 - MER39 LTR ERV1 0 652 336 241 216 117 53 chrX 10109287 10109458 -152490472 + L2 LINE L2 3047 3228 -85 25 65 0 0 chrX 10109604 10109650 -152490280 + AT_rich Low_complexity Low_complexity 1 46 0 633 119 99 0 chrX 10109650 10109751 -152490179 - HY1 scRNA scRNA -1 111 1 661 150 83 0 chrX 10109827 10109960 -152489970 + L1MA9 LINE L1 6164 6307 -5 2358 175 47 2 chrX 10110071 10110477 -152489453 + MSTB LTR MaLR 1 424 -2 23 33 0 0 chrX 10110851 10110881 -152489049 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 10110933 10110956 -152488974 + AT_rich Low_complexity Low_complexity 1 23 0 2128 127 91 11 chrX 10110959 10111501 -152488429 - MER39B LTR ERV1 0 653 1 400 286 63 23 chrX 10111532 10111707 -152488223 - L1MC4a LINE L1 -1929 5879 5698 604 182 91 26 chrX 10112387 10112541 -152487389 - MLT1E1 LTR MaLR -1 653 490 1417 228 57 54 chrX 10112840 10113300 -152486630 - LTR48B LTR ERV1 -183 461 1 38 61 0 0 chrX 10113458 10113524 -152486406 + AT_rich Low_complexity Low_complexity 1 66 0 1026 166 14 54 chrX 10113558 10113781 -152486149 + MER20 DNA MER1_type 2 215 -4 287 323 125 15 chrX 10113892 10114285 -152485645 - L1M4 LINE L1 -3382 2764 2329 3012 120 37 8 chrX 10114287 10114771 -152485159 - L1PA16 LINE L1 -4 6162 5665 658 88 39 0 chrX 10114792 10114894 -152485036 - MER39B LTR ERV1 -458 195 90 2130 112 8 36 chrX 10114926 10115282 -152484648 - L1PA16 LINE L1 -509 5657 5312 3167 123 74 2 chrX 10115796 10116307 -152483623 - MER34C LTR ERV1 -3 582 35 21 0 0 0 chrX 10116844 10116865 -152483065 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 10117245 10117267 -152482663 + AT_rich Low_complexity Low_complexity 1 22 0 777 153 0 0 chrX 10117310 10117434 -152482496 - AluSg/x SINE Alu -8 304 181 502 278 70 54 chrX 10117534 10117917 -152482013 - L1M4 LINE L1 -1767 4379 4004 1732 156 7 4 chrX 10117917 10118186 -152481744 + AluJo SINE Alu 6 275 -37 213 65 0 0 chrX 10118194 10118225 -152481705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 502 278 70 54 chrX 10118225 10118329 -152481601 - L1M4 LINE L1 -2148 3998 3875 875 196 6 39 chrX 10118393 10118572 -152481358 + AluJo SINE Alu 105 277 -35 303 281 58 22 chrX 10118592 10118731 -152481199 - L1M4 LINE L1 -2632 3514 3371 221 211 39 0 chrX 10119013 10119065 -152480865 - MIR SINE MIR -13 249 196 2231 106 3 10 chrX 10121683 10121994 -152477936 - AluSg SINE Alu -1 309 1 2261 111 3 0 chrX 10122212 10122540 -152477390 - AluSg SINE Alu 0 329 1 2398 204 8 37 chrX 10122676 10123191 -152476739 + MLT1D LTR MaLR 6 505 0 1223 293 270 21 chrX 10123653 10125090 -152474840 - L2 LINE L2 -9 3304 1498 424 292 8 36 chrX 10125473 10125729 -152474201 + GA-rich Low_complexity Low_complexity 1 248 0 216 259 0 0 chrX 10125810 10125891 -152474039 + G-rich Low_complexity Low_complexity 1 81 0 217 358 0 22 chrX 10126469 10126603 -152473327 + CT-rich Low_complexity Low_complexity 4 134 0 264 295 52 69 chrX 10126778 10126951 -152472979 - MIR SINE MIR -85 177 8 950 190 0 11 chrX 10127285 10127459 -152472471 - FRAM SINE Alu -4 172 1 189 74 0 0 chrX 10128220 10128247 -152471683 + (TA)n Simple_repeat Simple_repeat 2 28 0 277 298 105 21 chrX 10128309 10128546 -152471384 - L1ME3 LINE L1 -258 5904 5650 994 251 63 25 chrX 10128557 10128876 -152471054 - MER58B DNA MER1_type -10 331 1 345 304 52 47 chrX 10129173 10129364 -152470566 - L1ME3 LINE L1 -758 5388 5197 1801 138 35 3 chrX 10130333 10130645 -152469285 + L1MC1 LINE L1 5989 6310 -23 243 186 0 43 chrX 10131195 10131265 -152468665 + T-rich Low_complexity Low_complexity 3 69 0 402 21 0 0 chrX 10131554 10131601 -152468329 + (TG)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chrX 10132989 10133009 -152466921 + (TC)n Simple_repeat Simple_repeat 1 20 0 1721 248 62 27 chrX 10133088 10133605 -152466325 - MLT1E LTR MaLR -1 592 58 996 211 0 44 chrX 10133908 10134136 -152465794 - MER20 DNA MER1_type 0 219 2 403 248 0 0 chrX 10135478 10135579 -152464351 - MER94 DNA DNA -32 102 2 2665 93 3 0 chrX 10137380 10137734 -152462196 + THE1A LTR MaLR 1 355 0 12071 84 6 1 chrX 10137734 10139307 -152460623 + THE1A-int LTR MaLR 1 1580 0 2763 75 0 17 chrX 10139307 10139668 -152460262 + THE1A LTR MaLR 1 355 0 23 0 0 0 chrX 10140462 10140485 -152459445 + AT_rich Low_complexity Low_complexity 1 23 0 960 174 0 36 chrX 10140594 10140761 -152459169 + FRAM SINE Alu 1 153 -23 24 0 0 0 chrX 10140767 10140791 -152459139 + AT_rich Low_complexity Low_complexity 1 24 0 1923 166 11 0 chrX 10140808 10141092 -152458838 + AluJb SINE Alu 5 291 -21 357 62 0 0 chrX 10141280 10141328 -152458602 + (TG)n Simple_repeat Simple_repeat 1 48 0 379 300 31 0 chrX 10141410 10141570 -152458360 - MER103 DNA DNA -1 165 1 1465 235 132 41 chrX 10141897 10142437 -152457493 - MLT1E LTR MaLR -2 591 3 282 271 79 50 chrX 10143257 10143315 -152456615 + MIR3 SINE MIR 3 58 -150 1592 177 84 26 chrX 10143315 10143660 -152456270 - MLT1A1 LTR MaLR 0 365 1 282 271 79 50 chrX 10143660 10143741 -152456189 + MIR3 SINE MIR 58 146 -62 954 237 67 19 chrX 10144021 10144333 -152455597 - L1ME3A LINE L1 -1 6169 5843 1415 235 48 42 chrX 10144568 10145076 -152454854 - L1ME3A LINE L1 -395 5775 5266 2844 128 14 2 chrX 10145472 10145895 -152454035 + MSTA LTR MaLR 1 428 0 594 273 19 46 chrX 10146468 10146684 -152453246 - MIR SINE MIR -36 226 17 946 241 18 35 chrX 10146684 10146912 -152453018 - MER58A DNA MER1_type 0 224 1 883 232 43 5 chrX 10147011 10147222 -152452708 + MER20 DNA MER1_type 1 219 0 197 336 66 25 chrX 10147374 10147496 -152452434 - MIR SINE MIR -12 250 124 860 292 100 22 chrX 10148084 10148685 -152451245 - L2 LINE L2 -1 3312 2664 290 306 0 0 chrX 10148823 10148895 -152451035 - MIR3 SINE MIR -17 191 120 279 246 15 15 chrX 10149095 10149160 -152450770 - L2 LINE L2 -182 3090 3026 222 222 11 89 chrX 10149652 10149742 -152450188 - MIR SINE MIR -64 198 116 536 356 11 0 chrX 10149982 10150173 -152449757 + MIR SINE MIR 14 206 -56 1235 231 72 6 chrX 10150377 10150478 -152449452 + MER58B DNA MER1_type 1 94 -2326 1717 181 13 17 chrX 10150478 10150777 -152449153 + AluJo SINE Alu 1 298 -14 1235 231 72 6 chrX 10150777 10150995 -152448935 + MER58B DNA MER1_type 94 341 0 423 339 166 11 chrX 10151017 10151294 -152448636 - L3 LINE CR1 -113 1464 1145 207 315 19 0 chrX 10151409 10151463 -152448467 + L2 LINE L2 3158 3212 -60 442 369 127 14 chrX 10151574 10151991 -152447939 - L3 LINE CR1 -561 1016 553 1778 174 3 13 chrX 10151991 10152289 -152447641 + AluJo SINE Alu 7 301 -11 3309 164 20 30 chrX 10152772 10153472 -152446458 - L1MB8 LINE L1 -1 6177 5485 183 129 0 0 chrX 10153636 10153667 -152446263 + (A)n Simple_repeat Simple_repeat 1 31 0 877 208 63 10 chrX 10153990 10154197 -152445733 + MER20 DNA MER1_type 1 218 -1 1909 4 8 34 chrX 10154369 10154604 -152445326 + L1PA3 LINE L1 5916 6144 -11 519 263 60 0 chrX 10155160 10155293 -152444637 + MIR SINE MIR 8 148 -114 1096 202 9 9 chrX 10155303 10155521 -152444409 + MER58A DNA MER1_type 1 218 -6 322 273 154 0 chrX 10155708 10155818 -152444112 - MIR SINE MIR -74 188 62 664 301 47 55 chrX 10156630 10157015 -152442915 - L3 LINE CR1 -95 1482 1101 219 146 0 24 chrX 10157100 10157141 -152442789 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 322 266 32 32 chrX 10157142 10157266 -152442664 - L1ME4a LINE L1 -66 6055 5932 243 323 10 40 chrX 10157449 10157548 -152442382 - L3 LINE CR1 -467 1110 1015 611 224 35 7 chrX 10158531 10158674 -152441256 + MIR SINE MIR 116 262 0 921 182 34 0 chrX 10158821 10158997 -152440933 - MER58A DNA MER1_type -3 221 40 241 227 30 45 chrX 10159058 10159190 -152440740 - L1ME4a LINE L1 -5 6116 5987 1950 183 34 13 chrX 10159277 10159665 -152440265 - MSTD LTR MaLR 0 396 1 650 274 52 14 chrX 10160056 10160268 -152439662 - MIR SINE MIR -3 259 40 227 280 0 54 chrX 10161277 10161370 -152438560 - L2 LINE L2 -1 3271 3184 35924 50 3 102 chrX 10161977 10168811 -152431119 + L1PA5 LINE L1 11 6146 -8 25 51 0 0 chrX 10168860 10168899 -152431031 + AT_rich Low_complexity Low_complexity 1 39 0 28 61 0 0 chrX 10168925 10168974 -152430956 + AT_rich Low_complexity Low_complexity 1 49 0 519 291 90 53 chrX 10168989 10169288 -152430642 + MLT1K LTR MaLR 2 311 -277 406 300 47 47 chrX 10169340 10169528 -152430402 + MLT1K LTR MaLR 326 516 -72 2064 156 111 32 chrX 10169528 10169799 -152430131 - MLT1D LTR MaLR 0 505 257 210 37 0 0 chrX 10169799 10169826 -152430104 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 2064 156 111 32 chrX 10169826 10170022 -152429908 - MLT1D LTR MaLR -248 257 1 406 300 47 47 chrX 10170022 10170086 -152429844 + MLT1K LTR MaLR 515 578 -10 1381 153 63 0 chrX 10171495 10171717 -152428213 - AluJb SINE Alu -76 236 1 186 43 0 0 chrX 10172504 10172527 -152427403 + (TC)n Simple_repeat Simple_repeat 2 24 0 861 235 10 0 chrX 10172729 10172929 -152427001 - MER105 DNA DNA -2 202 1 253 188 47 47 chrX 10173419 10173483 -152426447 + MIR SINE MIR 83 146 -116 457 146 11 11 chrX 10173540 10173629 -152426301 - L1PB2 LINE L1 -7 6144 6056 300 309 37 25 chrX 10175762 10175924 -152424006 + L3b LINE CR1 1102 1265 -318 515 167 0 0 chrX 10176650 10176734 -152423196 + AluJ/FLAM SINE Alu 1 84 -228 311 243 10 78 chrX 10177138 10177241 -152422689 + Charlie1b DNA MER1_type 1 96 -427 247 246 0 18 chrX 10177246 10177360 -152422570 + (TAA)n Simple_repeat Simple_repeat 3 114 0 1605 144 89 10 chrX 10177360 10177743 -152422187 + Charlie1b DNA MER1_type 81 493 -30 689 310 57 8 chrX 10178180 10178425 -152421505 - MIR SINE MIR -1 261 5 460 219 161 19 chrX 10178659 10178814 -152421116 - MLT1J2 LTR MaLR -233 217 41 662 293 11 0 chrX 10179064 10179238 -152420692 - MER91B DNA MER1_type -13 177 2 2006 151 13 13 chrX 10179365 10179677 -152420253 - AluSx SINE Alu 0 312 1 690 223 27 0 chrX 10179836 10179984 -152419946 - MER20 DNA MER1_type 0 219 68 452 298 159 22 chrX 10180127 10180436 -152419494 + L2 LINE L2 2713 3054 -218 389 325 50 0 chrX 10181016 10181136 -152418794 + L2 LINE L2 3147 3272 0 2628 109 5 5 chrX 10183453 10183828 -152416102 - THE1C LTR MaLR 0 375 1 10155 110 37 34 chrX 10183828 10185404 -152414526 - THE1C-int LTR MaLR 0 1580 1 2590 96 27 0 chrX 10185404 10185769 -152414161 - THE1C LTR MaLR 0 375 1 350 333 56 31 chrX 10185920 10186082 -152413848 + MIR SINE MIR 17 182 -80 297 0 0 0 chrX 10186342 10186375 -152413555 + (GA)n Simple_repeat Simple_repeat 2 34 0 269 349 34 20 chrX 10186450 10186596 -152413334 - MLT1L LTR MaLR -124 491 344 316 295 27 18 chrX 10186721 10186833 -152413097 + L2 LINE L2 3201 3313 0 249 387 51 7 chrX 10187680 10187817 -152412113 - MIR3 SINE MIR -47 161 19 284 285 16 57 chrX 10188022 10188145 -152411785 + MIR SINE MIR 100 217 -45 2876 273 89 32 chrX 10188297 10189427 -152410503 - L2 LINE L2 -655 2659 1465 779 169 0 0 chrX 10189449 10189610 -152410320 - FLAM_C SINE Alu 0 162 2 991 187 0 0 chrX 10189662 10189828 -152410102 - AluJb SINE Alu -10 302 137 1100 274 93 46 chrX 10189863 10190675 -152409255 + L2 LINE L2 2455 3313 0 340 215 0 0 chrX 10191183 10191248 -152408682 - MIR SINE MIR -111 151 87 186 161 0 0 chrX 10191405 10191436 -152408494 - MIR3 SINE MIR -23 185 155 1153 247 21 132 chrX 10192423 10193130 -152406800 - L2 LINE L2 0 3313 2701 402 21 0 0 chrX 10193130 10193177 -152406753 + (CA)n Simple_repeat Simple_repeat 2 48 0 1153 247 21 132 chrX 10193177 10193230 -152406700 - L2 LINE L2 -612 2701 2644 180 0 0 0 chrX 10194045 10194065 -152405865 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 22 70 0 0 chrX 10194891 10194934 -152404996 + GC_rich Low_complexity Low_complexity 1 43 0 1688 167 93 0 chrX 10199475 10199787 -152400143 + MER58B DNA MER1_type 1 341 0 189 26 79 0 chrX 10200999 10201037 -152398893 + (TA)n Simple_repeat Simple_repeat 2 42 0 700 166 108 0 chrX 10201842 10201981 -152397949 + MER58B DNA MER1_type 167 320 -21 2458 77 0 7 chrX 10202321 10202631 -152397299 + AluY SINE Alu 1 308 -3 195 186 0 0 chrX 10202691 10202734 -152397196 + (CA)n Simple_repeat Simple_repeat 2 44 0 325 347 52 47 chrX 10202734 10202947 -152396983 + L2 LINE L2 2864 3077 -195 565 313 78 4 chrX 10203053 10203321 -152396609 - MLT1J1 LTR MaLR -108 338 51 441 247 54 38 chrX 10203373 10203559 -152396371 + MLT1H LTR MaLR 1 189 -360 15313 111 19 17 chrX 10203905 10205365 -152394565 + Tigger1 DNA MER2_type 6 1474 -944 785 108 0 0 chrX 10205365 10205476 -152394454 + HY1 scRNA scRNA 1 111 -1 15313 111 19 17 chrX 10205476 10206423 -152393507 + Tigger1 DNA MER2_type 1474 2418 0 238 243 0 0 chrX 10206859 10206929 -152393001 + L1ME4a LINE L1 6049 6118 -3 810 100 0 8 chrX 10206950 10207070 -152392860 + Tigger1 DNA MER2_type 1283 1401 -1017 291 188 12 47 chrX 10207356 10207441 -152392489 + L1MC4a LINE L1 5808 5889 -1919 21 0 0 0 chrX 10207631 10207652 -152392278 + AT_rich Low_complexity Low_complexity 1 21 0 336 266 156 0 chrX 10207964 10208118 -152391812 - L1ME4a LINE L1 -268 5853 5676 420 222 0 34 chrX 10208532 10208649 -152391281 + L1MC4a LINE L1 5793 5905 -1903 2732 13 0 10 chrX 10209163 10209468 -152390462 - AluYb8 SINE Alu -9 309 8 1462 189 94 3 chrX 10209998 10210305 -152389625 + MER58B DNA MER1_type 4 338 -3 404 250 69 132 chrX 10211011 10211407 -152388523 - MLT1L LTR MaLR -109 506 37 662 261 111 70 chrX 10211594 10212035 -152387895 - MLT1L LTR MaLR -9 606 148 1155 184 4 43 chrX 10212038 10212271 -152387659 + MER58A DNA MER1_type 1 224 0 387 298 9 18 chrX 10212330 10212483 -152387447 + MER20B DNA MER1_type 64 219 0 328 262 0 0 chrX 10212559 10212643 -152387287 - MLT1L LTR MaLR -517 98 15 296 203 0 0 chrX 10213285 10213344 -152386586 + MER112 DNA MER1_type 19 77 -183 659 190 180 14 chrX 10214788 10214999 -152384931 - L1ME3A LINE L1 -175 5995 5750 302 253 44 0 chrX 10215002 10215093 -152384837 - L1ME3A LINE L1 -456 5714 5620 249 191 90 56 chrX 10215313 10215402 -152384528 - MLT1J1 LTR MaLR -6 440 349 380 243 62 14 chrX 10215508 10215652 -152384278 - MLT1J1 LTR MaLR -295 151 1 369 93 0 0 chrX 10216308 10216362 -152383568 + (TG)n Simple_repeat Simple_repeat 2 55 0 211 224 0 0 chrX 10217151 10217200 -152382730 + (TTA)n Simple_repeat Simple_repeat 2 50 0 285 146 0 0 chrX 10217300 10217348 -152382582 + (CTG)n Simple_repeat Simple_repeat 1 48 0 683 210 95 91 chrX 10217369 10217403 -152382527 - MIR SINE MIR -9 253 221 2000 153 0 0 chrX 10217403 10217698 -152382232 - AluSx SINE Alu -17 295 1 683 210 95 91 chrX 10217698 10217915 -152382015 - MIR SINE MIR -41 221 1 212 128 51 0 chrX 10219587 10219626 -152380304 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 234 0 0 0 chrX 10219702 10219728 -152380202 + (A)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chrX 10220240 10220273 -152379657 + AT_rich Low_complexity Low_complexity 1 33 0 21598 33 0 0 chrX 10220285 10223675 -152376255 - L1PA4 LINE L1 0 6155 2769 946 194 10 20 chrX 10224185 10224386 -152375544 + MER20 DNA MER1_type 18 216 -3 403 284 46 35 chrX 10224389 10224586 -152375344 + MLT1J2 LTR MaLR 250 448 -2 2472 66 0 0 chrX 10224862 10225163 -152374767 - AluY SINE Alu -9 302 2 975 235 14 27 chrX 10225713 10225934 -152373996 + MER58A DNA MER1_type 5 222 -2 438 224 42 42 chrX 10225940 10226105 -152373825 - HsTC2a DNA Tc2 -127 615 451 514 202 21 0 chrX 10226116 10226210 -152373720 - MER58A DNA MER1_type -7 100 5 756 239 127 52 chrX 10226257 10226658 -152373272 - HsTC2a DNA Tc2 -311 433 3 1152 67 93 72 chrX 10228385 10228578 -152371352 - MER107 DNA MER1_type 0 197 1 999 143 6 6 chrX 10228724 10228885 -152371045 - MER5A DNA MER1_type -25 164 4 266 185 139 74 chrX 10228912 10229020 -152370910 + MLT1E3 LTR MaLR 214 332 -292 1629 186 73 6 chrX 10230314 10230631 -152369299 - MER58B DNA MER1_type -2 339 2 333 209 418 8 chrX 10230873 10231007 -152368923 - MER5A DNA MER1_type 0 189 1 219 295 124 38 chrX 10231252 10231357 -152368573 + L2 LINE L2 3180 3293 -20 733 194 42 63 chrX 10231649 10231775 -152368155 + MER5A DNA MER1_type 3 125 -64 2046 108 25 0 chrX 10231775 10232053 -152367877 - AluSq SINE Alu -28 285 1 733 194 42 63 chrX 10232053 10232117 -152367813 + MER5A DNA MER1_type 125 189 0 388 208 0 0 chrX 10232129 10232201 -152367729 - MER5B DNA MER1_type -3 175 104 790 212 61 40 chrX 10232203 10232401 -152367529 + MER63A DNA MER1_type 3 204 -6 501 198 10 30 chrX 10232406 10232507 -152367423 - MER5B DNA MER1_type -67 111 13 330 295 25 0 chrX 10233434 10233556 -152366374 + L1MC5 LINE L1 7789 7913 -48 490 268 24 8 chrX 10233924 10234047 -152365883 - L2 LINE L2 -1 3312 3188 2064 191 0 3 chrX 10234214 10234580 -152365350 + MLT1A1 LTR MaLR 1 365 0 409 239 35 35 chrX 10234829 10234942 -152364988 - L2 LINE L2 0 3272 3160 1180 258 67 39 chrX 10235144 10235668 -152364262 - MLT1H LTR MaLR -2 588 8 244 311 54 0 chrX 10235670 10235744 -152364186 - L2 LINE L2 -1022 2292 2215 791 183 74 45 chrX 10236376 10236578 -152363352 - MER3 DNA MER1_type 0 209 2 761 318 184 27 chrX 10236802 10236899 -152363031 + L3 LINE CR1 747 827 -750 914 248 13 22 chrX 10236899 10237125 -152362805 - MER58A DNA MER1_type 0 224 1 761 318 184 27 chrX 10237125 10237734 -152362196 + L3 LINE CR1 827 1564 -13 975 286 111 49 chrX 10237739 10237877 -152362053 - MLT1K LTR MaLR -20 568 440 965 215 6 0 chrX 10237877 10238054 -152361876 - MER45A DNA AcHobo 0 178 1 975 286 111 49 chrX 10238054 10238429 -152361501 - MLT1K LTR MaLR -148 440 23 195 69 0 0 chrX 10238799 10238828 -152361102 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 365 307 31 8 chrX 10239213 10239340 -152360590 + MIR SINE MIR 13 142 -120 3699 79 6 24 chrX 10240840 10241386 -152358544 + L1MA2 LINE L1 5769 6304 0 197 286 93 57 chrX 10241548 10241688 -152358242 - MER5B DNA MER1_type -1 177 33 37 62 0 0 chrX 10242574 10242639 -152357291 + AT_rich Low_complexity Low_complexity 1 65 0 569 218 9 109 chrX 10243767 10243978 -152355952 - MER112 DNA MER1_type -6 254 65 205 313 0 0 chrX 10243983 10244050 -152355880 + (TATG)n Simple_repeat Simple_repeat 2 68 0 323 296 88 8 chrX 10244306 10244431 -152355499 + MIR SINE MIR 6 140 -122 426 326 42 14 chrX 10244527 10244671 -152355259 + MIR SINE MIR 88 235 -27 7828 187 43 19 chrX 10245147 10248300 -152351630 + L1MC1 LINE L1 3110 6331 -2 1020 188 16 0 chrX 10248919 10249105 -152350825 - MER5A DNA MER1_type 0 189 1 785 124 8 0 chrX 10249992 10250121 -152349809 + (GGAA)n Simple_repeat Simple_repeat 4 133 0 1419 233 95 40 chrX 10251509 10252033 -152347897 - MER68 LTR ERV1 -7 555 3 200 143 57 0 chrX 10252869 10252939 -152346991 + (TA)n Simple_repeat Simple_repeat 1 74 0 217 242 23 181 chrX 10254583 10254798 -152345132 - MER5A DNA MER1_type 0 189 9 438 20 0 0 chrX 10255477 10255528 -152344402 + (TG)n Simple_repeat Simple_repeat 2 52 0 370 294 114 5 chrX 10255763 10255899 -152344031 + L1ME4a LINE L1 5617 5780 -341 4081 130 8 65 chrX 10255899 10256632 -152343298 - LTR8 LTR ERV1 0 691 1 370 294 114 5 chrX 10256632 10256679 -152343251 + L1ME4a LINE L1 5780 5820 -301 24 0 0 0 chrX 10256714 10256738 -152343192 + AT_rich Low_complexity Low_complexity 1 24 0 852 170 0 0 chrX 10256738 10256873 -152343057 - AluJo SINE Alu -177 135 1 1702 148 60 76 chrX 10256960 10257379 -152342551 - LTR37A LTR ERV1 -11 415 4 285 219 61 9 chrX 10257420 10257534 -152342396 + L1ME4a LINE L1 6002 6121 0 1787 197 39 58 chrX 10258855 10259322 -152340608 + MLT1C LTR MaLR 10 467 0 226 265 17 88 chrX 10259407 10259588 -152340342 - LTR33A LTR ERVL 0 523 356 1025 140 31 79 chrX 10260314 10260543 -152339387 + MER20 DNA MER1_type 2 219 0 460 249 208 17 chrX 10261384 10261557 -152338373 - L3b LINE CR1 -24 1559 1354 21 100 0 0 chrX 10261583 10261653 -152338277 + AT_rich Low_complexity Low_complexity 1 70 0 200 312 205 39 chrX 10262291 10262427 -152337503 + MIR SINE MIR 18 130 -132 210 71 0 0 chrX 10262427 10262455 -152337475 + (TTAAA)n Simple_repeat Simple_repeat 5 32 0 200 312 205 39 chrX 10262455 10262523 -152337407 + MIR SINE MIR 130 256 -6 1012 300 50 65 chrX 10262610 10263134 -152336796 + LTR67 LTR ERVL 40 555 -2 445 293 87 79 chrX 10263693 10264185 -152335745 + L1ME LINE L1 36 531 -5539 285 345 5 10 chrX 10264319 10264525 -152335405 + L1ME LINE L1 531 735 -5526 24 67 0 0 chrX 10265388 10265433 -152334497 + AT_rich Low_complexity Low_complexity 1 45 0 770 197 101 56 chrX 10268336 10268534 -152331396 - MER58C DNA MER1_type -8 207 1 432 229 116 53 chrX 10268574 10268869 -152331061 + MLT1J LTR MaLR 59 495 -16 21 0 0 0 chrX 10271145 10271166 -152328764 + AT_rich Low_complexity Low_complexity 1 21 0 230 200 0 50 chrX 10271301 10271361 -152328569 + MER116 DNA Mariner 1 57 -23 194 224 20 20 chrX 10271741 10271790 -152328140 - L2 LINE L2 -11 3261 3213 * 693 174 56 28 chrX 10271757 10271901 -152328029 - MIR SINE MIR -21 241 94 200 333 49 12 chrX 10271980 10272061 -152327869 + L2 LINE L2 2882 2965 -349 1047 190 41 41 chrX 10272064 10272285 -152327645 + MER58A DNA MER1_type 4 224 0 866 232 76 54 chrX 10272314 10272830 -152327100 - MLT1G1 LTR MaLR -2 588 3 344 106 0 0 chrX 10273658 10273705 -152326225 + tRNA-Met-e tRNA tRNA 6 52 -23 1041 221 33 0 chrX 10273893 10274106 -152325824 + MER58A DNA MER1_type 1 220 -4 440 271 31 31 chrX 10275175 10275304 -152324626 - MIR3 SINE MIR -49 159 31 1746 195 13 0 chrX 10275326 10275624 -152324306 + AluJb SINE Alu 1 302 -10 289 367 73 11 chrX 10275761 10275938 -152323992 - MER5A DNA MER1_type -1 188 1 269 146 0 21 chrX 10276049 10276097 -152323833 - MLT1I LTR MaLR 0 409 363 2245 107 3 3 chrX 10276101 10276451 -152323479 + AluSp SINE Alu 3 313 0 498 237 115 6 chrX 10276577 10276733 -152323197 - L1ME3A LINE L1 -11 6159 5987 462 264 43 14 chrX 10276775 10276915 -152323015 - MLT1J2 LTR MaLR -286 164 21 254 303 31 49 chrX 10277775 10277937 -152321993 - L2 LINE L2 -220 3052 2894 240 262 24 0 chrX 10278092 10278176 -152321754 + L1ME LINE L1 5759 5844 -277 773 197 0 0 chrX 10278290 10278422 -152321508 + FLAM_C SINE Alu 1 132 -11 21 36 0 0 chrX 10278428 10278456 -152321474 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chrX 10278543 10278574 -152321356 + AT_rich Low_complexity Low_complexity 1 31 0 3289 223 22 15 chrX 10278732 10279305 -152320625 - L1ME1 LINE L1 -9 6157 5575 3540 133 13 2 chrX 10279305 10279860 -152320070 + L1PA15 LINE L1 5605 6165 0 3289 223 22 15 chrX 10279860 10280142 -152319788 - L1ME1 LINE L1 -591 5575 5296 964 209 58 5 chrX 10280185 10280391 -152319539 - MER20 DNA MER1_type -2 217 1 1329 159 0 5 chrX 10280464 10280705 -152319225 - AluJb SINE Alu 0 324 85 184 230 270 50 chrX 10282197 10282297 -152317633 + MIR SINE MIR 141 262 0 1129 152 0 11 chrX 10282335 10282519 -152317411 - AluJb SINE Alu -4 308 127 2409 204 23 18 chrX 10282734 10283248 -152316682 - LTR40a LTR ERVL -2 517 1 30 0 0 0 chrX 10283310 10283340 -152316590 + AT_rich Low_complexity Low_complexity 1 30 0 1953 171 0 0 chrX 10283758 10284051 -152315879 + AluJo SINE Alu 1 293 -19 345 47 0 0 chrX 10284051 10284094 -152315836 + (GA)n Simple_repeat Simple_repeat 2 44 0 268 325 13 13 chrX 10284377 10284534 -152315396 - MER103 DNA DNA -7 159 3 335 331 69 0 chrX 10285542 10285687 -152314243 + MIR SINE MIR 88 242 -20 182 338 86 39 chrX 10285863 10286224 -152313706 + L2 LINE L2 1613 1990 -1324 31 26 0 0 chrX 10287088 10287126 -152312804 + AT_rich Low_complexity Low_complexity 1 38 0 700 11 32 75 chrX 10287127 10287315 -152312615 + (TA)n Simple_repeat Simple_repeat 1 180 0 834 183 0 0 chrX 10287315 10287452 -152312478 - AluJb SINE Alu -38 274 138 301 271 100 2 chrX 10287474 10287644 -152312286 + MIR SINE MIR 1 227 -35 193 275 0 62 chrX 10287798 10287878 -152312052 - MER5B DNA MER1_type -1 177 103 * 270 264 12 49 chrX 10287819 10287912 -152312018 + MER5A DNA MER1_type 21 121 -68 467 234 9 0 chrX 10288215 10288322 -152311608 + MER94 DNA DNA 24 131 -3 2461 95 32 16 chrX 10288452 10288821 -152311109 - THE1C LTR MaLR 0 375 1 275 345 62 0 chrX 10289027 10289140 -152310790 - L2 LINE L2 -46 3226 3107 909 122 21 43 chrX 10289482 10289670 -152310260 + MER53 DNA DNA 6 189 0 247 248 99 20 chrX 10290050 10290151 -152309779 + L2 LINE L2 3200 3308 -5 260 27 27 0 chrX 10290217 10290254 -152309676 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 202 233 133 33 chrX 10291227 10291287 -152308643 - L2 LINE L2 0 3272 3207 553 245 162 10 chrX 10292005 10292209 -152307721 + MIR SINE MIR 20 254 -8 291 308 70 26 chrX 10292360 10292546 -152307384 + MIR SINE MIR 19 216 -46 243 157 0 59 chrX 10292579 10292630 -152307300 - MIR SINE MIR -9 253 206 1037 179 19 5 chrX 10293091 10293298 -152306632 + MER20 DNA MER1_type 10 219 0 735 204 26 0 chrX 10294194 10294346 -152305584 + MER58A DNA MER1_type 46 201 -23 2088 84 3 50 chrX 10294348 10294678 -152305252 - AluSp SINE Alu 0 316 1 291 282 154 13 chrX 10295693 10295842 -152304088 - MLT1J2 LTR MaLR 0 450 281 1756 205 6 16 chrX 10295879 10296245 -152303685 - MLT1A1 LTR MaLR 0 365 4 997 199 14 5 chrX 10296290 10296506 -152303424 + MER58B DNA MER1_type 123 340 -1 238 281 53 18 chrX 10296572 10296686 -152303244 - MLT1J1 LTR MaLR -308 138 21 1986 155 0 3 chrX 10297857 10298161 -152301769 + AluJo SINE Alu 1 303 -9 380 169 13 0 chrX 10298161 10298238 -152301692 + GA-rich Low_complexity Low_complexity 1 78 0 1815 189 0 7 chrX 10298976 10299278 -152300652 - AluJo SINE Alu -12 300 1 745 198 0 0 chrX 10299295 10299421 -152300509 - FLAM_C SINE Alu -17 126 1 1629 183 53 17 chrX 10300034 10300334 -152299596 - AluJo SINE Alu 0 312 2 306 0 0 0 chrX 10300336 10300370 -152299560 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 321 231 0 51 chrX 10300843 10300921 -152299009 + MER58B DNA MER1_type 268 341 0 713 286 65 14 chrX 10301047 10301400 -152298530 + MER115 DNA AcHobo 323 693 0 189 0 0 0 chrX 10301752 10301773 -152298157 + (T)n Simple_repeat Simple_repeat 1 21 0 1632 203 19 63 chrX 10301808 10302222 -152297708 + MSTD LTR MaLR 1 396 0 1330 161 5 27 chrX 10303328 10303552 -152296378 - MER20 DNA MER1_type 0 219 1 818 163 0 22 chrX 10303790 10303925 -152296005 - FLAM_C SINE Alu 0 133 2 342 349 18 0 chrX 10304061 10304170 -152295760 - MIR SINE MIR -69 139 29 329 259 52 30 chrX 10304849 10304984 -152294946 - L1ME4a LINE L1 -35 6086 5949 2400 95 0 0 chrX 10304996 10305301 -152294629 + AluSx SINE Alu 1 305 -7 243 0 0 0 chrX 10306262 10306289 -152293641 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 447 35 0 0 chrX 10306288 10306345 -152293585 + (TG)n Simple_repeat Simple_repeat 2 58 0 370 298 48 52 chrX 10307687 10307959 -152291971 + LTR16A1 LTR ERVL 187 457 0 569 318 70 4 chrX 10308036 10308278 -152291652 + MIR SINE MIR 4 261 -1 306 268 65 29 chrX 10308333 10308471 -152291459 - MIR SINE MIR -81 181 39 303 352 213 0 chrX 10310303 10310627 -152289303 - L2 LINE L2 -640 2674 2282 193 302 48 0 chrX 10311405 10311468 -152288462 - L2 LINE L2 -1034 2280 2215 222 311 138 16 chrX 10313841 10313972 -152285958 + MIR SINE MIR 9 141 -67 215 328 99 6 chrX 10314047 10314218 -152285712 + L2 LINE L2 1480 1666 -1648 2035 183 7 27 chrX 10314418 10314822 -152285108 + MSTD LTR MaLR 1 396 0 24 32 0 0 chrX 10314886 10314917 -152285013 + AT_rich Low_complexity Low_complexity 1 31 0 2110 104 35 0 chrX 10314918 10315256 -152284674 - L1MA4 LINE L1 -6 6294 5945 462 279 80 34 chrX 10315291 10315528 -152284402 - MLT1J2 LTR MaLR -35 415 168 1458 202 18 21 chrX 10315532 10315869 -152284061 + MLT1C LTR MaLR 132 467 0 545 275 12 12 chrX 10315870 10316037 -152283893 - MLT1J2 LTR MaLR -282 168 2 190 326 116 0 chrX 10316133 10316219 -152283711 - MIR SINE MIR -38 224 129 569 352 134 30 chrX 10316260 10317375 -152282555 + L2 LINE L2 2033 3267 -5 249 174 70 58 chrX 10317909 10317995 -152281935 - L1MC5 LINE L1 -44 7917 7831 23 33 0 0 chrX 10318117 10318147 -152281783 + AT_rich Low_complexity Low_complexity 1 30 0 813 249 11 0 chrX 10318308 10318489 -152281441 + MER58A DNA MER1_type 1 183 -41 35 0 0 0 chrX 10318489 10318524 -152281406 + AT_rich Low_complexity Low_complexity 1 35 0 716 151 42 17 chrX 10318532 10318651 -152281279 - FLAM_C SINE Alu -11 122 1 554 322 18 0 chrX 10318696 10318867 -152281063 + MIR SINE MIR 70 243 -19 208 294 119 8 chrX 10318931 10319057 -152280873 + MIR SINE MIR 49 188 -74 1262 274 98 19 chrX 10319359 10319435 -152280495 - L2 LINE L2 -290 3023 2954 495 259 0 17 chrX 10319435 10319551 -152280379 - MER81 DNA DNA 0 114 1 1262 274 98 19 chrX 10319551 10319975 -152279955 - L2 LINE L2 -359 2954 2485 1336 171 171 23 chrX 10319975 10320320 -152279610 - MSTD LTR MaLR 0 396 1 337 308 0 0 chrX 10320322 10320413 -152279517 - L2 LINE L2 -829 2485 2395 294 246 140 35 chrX 10320537 10320651 -152279279 - L2 LINE L2 -937 2377 2252 768 229 41 0 chrX 10321340 10321510 -152278420 - MER5B DNA MER1_type -1 177 1 2586 35 0 16 chrX 10322086 10322401 -152277529 + AluY SINE Alu 1 310 -1 261 252 78 35 chrX 10322478 10322593 -152277337 - MLT1H LTR MaLR 0 549 430 480 275 26 54 chrX 10322691 10322901 -152277029 - MLT1H LTR MaLR -302 247 1 1420 160 254 32 chrX 10323090 10323428 -152276502 - MER47B DNA MER2_type 0 418 6 21 0 0 0 chrX 10323610 10323631 -152276299 + AT_rich Low_complexity Low_complexity 1 21 0 825 279 95 23 chrX 10324195 10324542 -152275388 - MLT1J2 LTR MaLR -40 410 39 208 291 55 63 chrX 10325526 10325653 -152274277 + MIR3 SINE MIR 78 203 -5 773 157 0 132 chrX 10325823 10326058 -152273872 + MER20 DNA MER1_type 16 219 0 229 162 0 59 chrX 10326820 10326888 -152273042 + L1MC4 LINE L1 6640 6703 -1339 697 211 23 12 chrX 10327041 10327212 -152272718 + L1MD3 LINE L1 7794 7966 -29 568 190 52 95 chrX 10327461 10327693 -152272237 - L1ME3A LINE L1 -22 6148 5927 432 293 159 0 chrX 10328039 10328196 -152271734 - MER5A DNA MER1_type -7 182 1 1008 183 142 0 chrX 10328220 10328439 -152271491 + MIR SINE MIR 2 251 -11 27 0 0 0 chrX 10328968 10328995 -152270935 + AT_rich Low_complexity Low_complexity 1 27 0 254 286 91 38 chrX 10379015 10379225 -152220705 - L2 LINE L2 -954 2360 2140 701 150 8 0 chrX 10380709 10380842 -152219088 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 257 239 22 22 chrX 10381938 10382072 -152217858 + GA-rich Low_complexity Low_complexity 3 136 0 23 33 0 0 chrX 10382520 10382550 -152217380 + AT_rich Low_complexity Low_complexity 1 30 0 201 261 108 63 chrX 10383256 10383367 -152216563 + MIR SINE MIR 2 117 -145 291 299 204 34 chrX 10384599 10384746 -152215184 + MIR SINE MIR 14 185 -77 708 249 12 25 chrX 10384746 10384998 -152214932 - LTR16C LTR ERVL 0 491 202 316 224 93 107 chrX 10386317 10386522 -152213408 + MLT1J LTR MaLR 224 425 -86 * 1579 228 102 7 chrX 10386518 10386970 -152212960 + HsTC2 DNA Tc2 19 513 -1385 1011 177 39 99 chrX 10386967 10387300 -152212630 + HsTC2 DNA Tc2 1269 1757 -141 * 297 209 309 0 chrX 10388855 10388965 -152210965 - MER20 DNA MER1_type -75 144 1 252 267 47 58 chrX 10389629 10389715 -152210215 - MER5B DNA MER1_type -36 142 58 21 0 0 0 chrX 10389808 10389829 -152210101 + AT_rich Low_complexity Low_complexity 1 21 0 231 97 0 0 chrX 10389854 10389885 -152210045 + LTR47A LTR ERVL 1 31 -421 1607 136 101 0 chrX 10389933 10390219 -152209711 + LTR47A LTR ERVL 130 444 -8 930 265 9 9 chrX 10390304 10390523 -152209407 + MER58A DNA MER1_type 2 220 -4 662 332 21 17 chrX 10390573 10390811 -152209119 - MIR SINE MIR -3 259 21 2390 176 73 13 chrX 10390901 10391377 -152208553 + MLT1D LTR MaLR 1 505 0 1088 169 9 65 chrX 10391938 10392169 -152207761 - MER20 DNA MER1_type 0 219 2 990 89 0 0 chrX 10392657 10392792 -152207138 + L1MA2 LINE L1 6170 6304 0 781 219 13 0 chrX 10393010 10393161 -152206769 - MER5B DNA MER1_type 0 178 26 845 263 13 18 chrX 10393167 10393391 -152206539 + MER58A DNA MER1_type 1 223 -1 332 303 93 18 chrX 10393632 10393965 -152205965 + L1MC5 LINE L1 7325 7682 -279 988 284 139 60 chrX 10394494 10395172 -152204758 - L2 LINE L2 -8 3305 2551 1408 152 32 127 chrX 10395172 10395573 -152204357 - MLT1A1 LTR MaLR -2 363 1 988 284 139 60 chrX 10395573 10395743 -152204187 - L2 LINE L2 -762 2551 2396 317 281 230 7 chrX 10395771 10395910 -152204020 + L2 LINE L2 2896 3065 -248 300 232 9 18 chrX 10396808 10396920 -152203010 + GA-rich Low_complexity Low_complexity 3 113 0 259 281 16 0 chrX 10397007 10397071 -152202859 + L2 LINE L2 2928 2992 -321 2703 122 18 23 chrX 10398330 10398765 -152201165 + Tigger2a DNA MER2_type 2 434 0 286 353 15 29 chrX 10398893 10399029 -152200901 - L2 LINE L2 -32 3240 3107 362 269 0 13 chrX 10400256 10400334 -152199596 - L2 LINE L2 -45 3268 3192 21 0 0 0 chrX 10400900 10400921 -152199009 + AT_rich Low_complexity Low_complexity 1 21 0 201 156 0 0 chrX 10401480 10401512 -152198418 + (TATG)n Simple_repeat Simple_repeat 2 33 0 474 261 90 23 chrX 10401514 10401824 -152198106 + L1ME4a LINE L1 5585 5915 -206 216 173 13 40 chrX 10403481 10403556 -152196374 + GA-rich Low_complexity Low_complexity 4 76 0 201 194 0 0 chrX 10403908 10403944 -152195986 + L3 LINE CR1 1540 1575 -2 346 113 0 0 chrX 10404910 10404963 -152194967 - MER53 DNA DNA -1 188 136 549 122 0 0 chrX 10405178 10405268 -152194662 - AluSp/q SINE Alu 0 313 224 23 0 0 0 chrX 10405316 10405339 -152194591 + AT_rich Low_complexity Low_complexity 1 23 0 2490 84 0 3 chrX 10405811 10406122 -152193808 - AluSg SINE Alu 0 310 1 200 371 67 0 chrX 10406580 10406669 -152193261 + L2 LINE L2 1394 1488 -1826 1284 206 35 14 chrX 10406747 10407091 -152192839 + Charlie1 DNA MER1_type 2411 2761 0 712 290 178 55 chrX 10407099 10407913 -152192017 + L2 LINE L2 1830 2743 -571 1942 155 0 13 chrX 10408940 10409250 -152190680 + AluJo SINE Alu 1 306 -6 239 293 13 93 chrX 10409912 10410062 -152189868 + MIR SINE MIR 119 256 -6 403 101 0 76 chrX 10410634 10410742 -152189188 + AluSg/x SINE Alu 217 310 0 220 229 0 0 chrX 10411409 10411457 -152188473 + A-rich Low_complexity Low_complexity 1 48 0 314 219 238 9 chrX 10411968 10412073 -152187857 - MER5A DNA MER1_type 0 189 61 1050 166 52 14 chrX 10413022 10413233 -152186697 + MER20 DNA MER1_type 1 219 0 709 239 78 29 chrX 10414362 10414567 -152185363 + MIR SINE MIR 48 262 0 718 303 110 42 chrX 10415084 10415362 -152184568 - HAL1 LINE L1 0 2507 2249 2239 48 0 7 chrX 10415362 10415635 -152184295 - AluY SINE Alu 0 311 41 718 303 110 42 chrX 10415635 10416139 -152183791 - HAL1 LINE L1 -258 2249 1672 610 261 18 125 chrX 10416134 10416678 -152183252 - HAL1 LINE L1 -1496 1011 526 * 1088 191 77 111 chrX 10417189 10417567 -152182363 + MLT1A1 LTR MaLR 1 365 0 300 301 82 27 chrX 10417864 10418010 -152181920 + L2 LINE L2 3160 3313 0 289 354 63 8 chrX 10418554 10418681 -152181249 - L2 LINE L2 0 3272 3139 207 250 0 0 chrX 10418881 10418921 -152181009 - L2 LINE L2 -15 3257 3218 574 295 51 30 chrX 10419527 10419761 -152180169 + L2 LINE L2 2902 3140 -173 1514 283 38 17 chrX 10419771 10420241 -152179689 - MLT1E LTR MaLR 0 593 114 816 128 0 0 chrX 10420246 10420355 -152179575 - FLAM_C SINE Alu -24 119 11 205 354 34 72 chrX 10421266 10421529 -152178401 - L2 LINE L2 -182 3090 2838 256 271 25 17 chrX 10421990 10422108 -152177822 - MLT1L LTR MaLR -350 265 147 486 310 62 48 chrX 10422323 10422727 -152177203 - L1M4 LINE L1 -1444 4702 4292 229 276 15 45 chrX 10422941 10423075 -152176855 - L1M4 LINE L1 -2107 4039 3910 495 305 147 29 chrX 10423083 10423471 -152176459 - L1M4 LINE L1 -2407 3739 3288 2054 134 3 0 chrX 10423471 10423769 -152176161 - AluSx SINE Alu -13 299 1 495 305 147 29 chrX 10423769 10423836 -152176094 - L1M4 LINE L1 -2858 3288 3230 24 32 0 0 chrX 10424079 10424110 -152175820 + AT_rich Low_complexity Low_complexity 1 31 0 488 164 107 0 chrX 10424182 10424304 -152175626 - L1MA4 LINE L1 0 6300 6166 201 39 0 0 chrX 10424796 10424822 -152175108 + (CA)n Simple_repeat Simple_repeat 2 27 0 214 194 28 0 chrX 10424859 10424931 -152174999 + CT-rich Low_complexity Low_complexity 2 75 0 244 217 43 29 chrX 10425077 10425146 -152174784 - HAL1b LINE L1 -864 484 415 190 259 185 44 chrX 10425957 10426092 -152173838 - MIR SINE MIR -70 192 39 219 322 0 0 chrX 10426100 10426159 -152173771 + L2 LINE L2 3250 3308 -5 251 241 52 0 chrX 10426315 10426373 -152173557 - MIR SINE MIR -89 173 113 1839 246 32 14 chrX 10426378 10426882 -152173048 + LTR40a LTR ERVL 6 518 -1 202 337 79 11 chrX 10426893 10426982 -152172948 - MIR SINE MIR -167 95 1 246 332 73 41 chrX 10427402 10427558 -152172372 + MIR SINE MIR 21 184 -65 765 191 56 0 chrX 10427569 10427747 -152172183 + MER53 DNA DNA 2 189 0 357 288 37 85 chrX 10427769 10428051 -152171879 - LTR16A1 LTR ERVL -23 468 185 596 188 8 0 chrX 10429514 10429631 -152170299 - MER94 DNA DNA -1 133 16 3559 194 11 7 chrX 10429970 10430719 -152169211 + L1MB7 LINE L1 5417 6168 -16 771 231 87 28 chrX 10430738 10431024 -152168906 - MER33 DNA MER1_type -18 306 4 2197 141 60 29 chrX 10432012 10432394 -152167536 - MSTD LTR MaLR -2 394 1 711 219 144 0 chrX 10432624 10432784 -152167146 + MER5A DNA MER1_type 1 183 -6 553 258 71 54 chrX 10432939 10433179 -152166751 - MIR SINE MIR 0 262 19 469 277 67 25 chrX 10433601 10433839 -152166091 + MER112 DNA MER1_type 1 248 -12 1653 151 42 33 chrX 10433956 10434287 -152165643 + THE1B LTR MaLR 31 364 0 960 226 18 18 chrX 10434660 10434877 -152165053 - MER20 DNA MER1_type 0 219 3 24 0 0 0 chrX 10435751 10435775 -152164155 + AT_rich Low_complexity Low_complexity 1 24 0 262 313 20 61 chrX 10436709 10436856 -152163074 + MIR SINE MIR 72 212 -50 1716 184 0 3 chrX 10437170 10437476 -152162454 + AluJb SINE Alu 1 305 0 272 303 88 72 chrX 10437735 10438190 -152161740 - MLT1J LTR MaLR -49 462 1 183 156 0 0 chrX 10438328 10438360 -152161570 + A-rich Low_complexity Low_complexity 1 32 0 566 277 142 35 chrX 10438393 10438685 -152161245 + L2 LINE L2 2744 3056 -257 300 91 0 0 chrX 10439185 10439229 -152160701 + (TG)n Simple_repeat Simple_repeat 1 44 0 271 203 68 0 chrX 10442491 10442565 -152157365 + L1MD3 LINE L1 7796 7874 -121 337 178 44 11 chrX 10442570 10442660 -152157270 + L1MD2 LINE L1 6265 6357 -2 1609 101 5 0 chrX 10443350 10443558 -152156372 - AluSp SINE Alu -104 209 1 255 271 123 25 chrX 10443559 10443681 -152156249 + MIR SINE MIR 123 256 -6 292 188 12 12 chrX 10443699 10443779 -152156151 + CT-rich Low_complexity Low_complexity 4 83 0 370 208 189 19 chrX 10443843 10443949 -152155981 - MER63 DNA MER1_type -86 750 1 638 231 55 28 chrX 10444900 10445082 -152154848 - MIR SINE MIR -22 240 54 1683 245 96 21 chrX 10445325 10445848 -152154082 + MER68 LTR ERV1 1 562 0 253 288 184 0 chrX 10445869 10445994 -152153936 - MLT1H LTR MaLR -4 545 398 402 203 203 15 chrX 10446074 10446207 -152153723 - MLT1H LTR MaLR -296 253 96 182 36 0 36 chrX 10446385 10446413 -152153517 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2821 234 66 5 chrX 10446779 10448024 -152151906 - L1ME1 LINE L1 -6 6160 4841 351 293 43 9 chrX 10449131 10449247 -152150683 - MIR SINE MIR -140 122 3 333 263 35 26 chrX 10449383 10449497 -152150433 - MLT1I LTR MaLR -35 374 260 251 220 0 0 chrX 10449570 10449629 -152150301 - MLT1I LTR MaLR -266 143 85 1937 142 3 3 chrX 10450171 10450459 -152149471 + AluJb SINE Alu 1 288 -24 197 33 33 0 chrX 10451143 10451173 -152148757 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 427 263 91 20 chrX 10451174 10451372 -152148558 - LTR16C LTR ERVL -24 467 256 * 948 217 54 5 chrX 10451360 10451563 -152148367 + MER58A DNA MER1_type 11 223 -1 199 325 78 0 chrX 10452620 10452697 -152147233 - L3 LINE CR1 -12 1565 1483 1998 134 10 13 chrX 10456701 10457014 -152142916 - AluSx SINE Alu 0 312 1 32376 37 4 2 chrX 10459998 10464933 -152134997 + L1PA4 LINE L1 1209 6155 0 1566 162 7 33 chrX 10465756 10466059 -152133871 + AluJo SINE Alu 1 295 -17 346 327 99 12 chrX 10466159 10466321 -152133609 + MIR SINE MIR 36 211 -51 983 145 6 0 chrX 10466808 10466980 -152132950 + (TA)n Simple_repeat Simple_repeat 1 173 0 1834 159 18 11 chrX 10466980 10467263 -152132667 - AluJb SINE Alu -27 285 1 207 146 0 0 chrX 10467780 10467821 -152132109 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 2098 132 69 65 chrX 10468921 10469123 -152130807 - Tigger2a DNA MER2_type -2274 434 234 2383 80 0 6 chrX 10469123 10469435 -152130495 + AluY SINE Alu 1 310 -1 2098 132 69 65 chrX 10469435 10469664 -152130266 - Tigger2a DNA MER2_type -2474 234 1 211 301 178 0 chrX 10469793 10469866 -152130064 - MIR3 SINE MIR -25 183 98 202 233 23 0 chrX 10469891 10469934 -152129996 - L2 LINE L2 -5 3308 3265 1293 200 29 6 chrX 10470071 10470386 -152129544 - MER33 DNA MER1_type -1 323 2 473 263 15 0 chrX 10470569 10470706 -152129224 - L2 LINE L2 -881 2433 2295 23 33 0 0 chrX 10471306 10471336 -152128594 + AT_rich Low_complexity Low_complexity 1 30 0 870 151 7 0 chrX 10472405 10472544 -152127386 - MER58B DNA MER1_type 0 341 202 1669 121 8 8 chrX 10473152 10473391 -152126539 + AluSg SINE Alu 59 297 -13 619 247 146 0 chrX 10473705 10473863 -152126067 + MER5A DNA MER1_type 9 189 0 241 194 0 75 chrX 10474943 10475010 -152124920 + GA-rich Low_complexity Low_complexity 3 64 0 484 326 14 0 chrX 10476236 10476349 -152123581 - MIR3 SINE MIR -18 190 73 957 215 51 9 chrX 10476349 10476563 -152123367 + MER58A DNA MER1_type 1 223 -1 484 326 14 0 chrX 10476563 10476596 -152123334 - MIR3 SINE MIR -135 73 42 203 226 147 20 chrX 10477401 10477503 -152122427 + L2 LINE L2 3199 3313 0 856 170 18 18 chrX 10477669 10477840 -152122090 - MSTD LTR MaLR -221 175 5 468 242 0 0 chrX 10477914 10478009 -152121921 + L2 LINE L2 3218 3312 -1 390 318 35 29 chrX 10478054 10478224 -152121706 - MIR SINE MIR -71 191 21 519 243 88 21 chrX 10478240 10478568 -152121362 - L1MC4a LINE L1 -1865 5943 5475 403 221 115 111 chrX 10478660 10478904 -152121026 - L1ME4a LINE L1 -6 6115 5871 266 300 56 11 chrX 10478995 10479085 -152120845 + MIR SINE MIR 157 250 -12 222 333 101 0 chrX 10479182 10479281 -152120649 - L2 LINE L2 0 3272 3164 327 296 136 8 chrX 10481063 10481195 -152118735 + MIR SINE MIR 5 153 -109 392 235 228 7 chrX 10481332 10481481 -152118449 - MIR SINE MIR -31 231 50 318 323 31 0 chrX 10481568 10481664 -152118266 - MIR SINE MIR -6 256 158 845 187 144 0 chrX 10481664 10481851 -152118079 - MER20 DNA MER1_type 0 219 6 431 243 22 20 chrX 10481868 10481997 -152117933 - MIR SINE MIR -66 142 20 408 247 170 46 chrX 10482747 10482941 -152116989 - MIR SINE MIR -11 251 34 862 175 34 34 chrX 10482944 10483121 -152116809 - MER5A DNA MER1_type 0 189 13 32 0 0 0 chrX 10483187 10483219 -152116711 + AT_rich Low_complexity Low_complexity 1 32 0 415 235 106 59 chrX 10483236 10483406 -152116524 - MER5B DNA MER1_type 0 178 1 199 277 0 0 chrX 10483470 10483517 -152116413 - MER5A DNA MER1_type -114 75 29 553 162 29 108 chrX 10483567 10483771 -152116159 - MER53 DNA DNA -1 188 1 320 242 30 20 chrX 10483846 10483945 -152115985 + MER5A DNA MER1_type 88 187 -2 233 50 0 50 chrX 10484523 10484563 -152115367 + (GGAAA)n Simple_repeat Simple_repeat 2 39 0 236 189 0 0 chrX 10486407 10486460 -152113470 + (TA)n Simple_repeat Simple_repeat 2 54 0 2890 162 5 43 chrX 10486830 10487454 -152112476 - L1MB4 LINE L1 -23 6157 5558 227 53 0 26 chrX 10487459 10487497 -152112433 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 573 204 219 0 chrX 10489485 10489622 -152110308 - MER5B DNA MER1_type -1 177 11 310 308 0 32 chrX 10489853 10490009 -152109921 + GA-rich Low_complexity Low_complexity 2 152 0 248 241 11 64 chrX 10490106 10490293 -152109637 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 390 259 19 9 chrX 10490301 10490409 -152109521 - MER94 DNA DNA -2 132 24 2336 102 3 0 chrX 10492909 10493213 -152106717 + AluSp SINE Alu 1 305 -8 3223 152 19 21 chrX 10493593 10493762 -152106168 - MER45B DNA AcHobo -543 1038 870 2293 101 0 0 chrX 10493762 10494050 -152105880 - AluSc SINE Alu -21 288 1 3223 152 19 21 chrX 10494050 10494499 -152105431 - MER45B DNA AcHobo -711 870 421 1172 175 0 44 chrX 10494731 10494960 -152104970 - MER58A DNA MER1_type -4 220 2 188 320 48 64 chrX 10495017 10495142 -152104788 - MIR SINE MIR -77 185 63 284 246 0 0 chrX 10495939 10496000 -152103930 + L2 LINE L2 3250 3310 -3 216 97 0 0 chrX 10496024 10496055 -152103875 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 2451 104 0 0 chrX 10496175 10496482 -152103448 + AluSg SINE Alu 1 307 -3 5138 84 6 4 chrX 10496495 10497208 -152102722 + L1PB1 LINE L1 5438 6151 0 403 308 25 13 chrX 10497381 10497540 -152102390 + MIR3 SINE MIR 8 168 -40 1660 130 18 0 chrX 10497645 10497929 -152102001 + L1MC3 LINE L1 7479 7767 -18 365 303 9 15 chrX 10497959 10498109 -152101821 + L1MB2 LINE L1 176 565 -5738 2076 236 38 39 chrX 10498536 10499442 -152100488 + L1MB2 LINE L1 778 1797 -4516 1397 153 16 4 chrX 10499460 10499708 -152100222 + Tigger1 DNA MER2_type 2079 2329 -89 24279 155 16 19 chrX 10499708 10505822 -152094108 - L1PA10 LINE L1 -34 6449 271 4359 185 49 9 chrX 10505834 10506288 -152093642 + L1MB2 LINE L1 3903 4337 -2070 198 0 0 0 chrX 10506288 10506310 -152093620 + (CA)n Simple_repeat Simple_repeat 1 22 0 4359 185 49 9 chrX 10506310 10507990 -152091940 + L1MB2 LINE L1 4337 6407 0 1560 175 125 0 chrX 10508378 10508681 -152091249 - MER58B DNA MER1_type 0 341 1 239 373 102 8 chrX 10509643 10509761 -152090169 - MER91A DNA MER1_type -47 149 21 2244 123 0 0 chrX 10510057 10510365 -152089565 - AluSx SINE Alu -4 308 1 529 305 52 14 chrX 10510974 10511144 -152088786 + MIR SINE MIR 2 183 -79 1692 139 133 52 chrX 10511144 10511335 -152088595 - LTR54B LTR ERV1 -1 497 323 1975 155 3 3 chrX 10511335 10511638 -152088292 + AluJo SINE Alu 2 304 -8 1692 139 133 52 chrX 10511638 10511906 -152088024 - LTR54B LTR ERV1 -175 323 1 529 305 52 14 chrX 10511906 10511945 -152087985 + MIR SINE MIR 183 219 -43 1549 119 0 25 chrX 10512303 10512539 -152087391 - MER30 DNA MER1_type 0 230 1 893 107 47 0 chrX 10512726 10512875 -152087055 + MER49 LTR ERV1 139 294 -629 848 97 48 23 chrX 10512861 10513052 -152086878 + MER4D LTR ERV1 62 365 -507 * 1888 174 69 16 chrX 10513059 10513491 -152086439 - L1M4 LINE L1 -475 5709 5255 830 96 7 66 chrX 10515215 10515351 -152084579 + FLAM_C SINE Alu 2 129 -4 192 363 73 51 chrX 10516268 10516623 -152083307 - L2 LINE L2 -525 2789 2427 343 209 18 0 chrX 10516717 10516827 -152083103 + (TGGA)n Simple_repeat Simple_repeat 2 113 0 419 250 230 7 chrX 10517353 10517501 -152082429 - MER5A DNA MER1_type 0 189 9 2002 208 91 65 chrX 10517602 10518569 -152081361 - L1MC5 LINE L1 -448 7513 6500 1625 152 7 45 chrX 10518757 10519026 -152080904 + AluJo SINE Alu 1 259 -53 843 157 5 65 chrX 10519126 10519311 -152080619 - Tigger2a DNA MER2_type -260 174 1 974 202 67 14 chrX 10519324 10519532 -152080398 + MER58A DNA MER1_type 3 221 -3 319 209 22 11 chrX 10519536 10519627 -152080303 - HAL1 LINE L1 -171 2336 2245 3363 140 132 6 chrX 10519659 10520287 -152079643 + MER39 LTR ERV1 1 707 0 21 36 0 0 chrX 10520861 10520889 -152079041 + AT_rich Low_complexity Low_complexity 1 28 0 45 34 0 0 chrX 10521596 10521655 -152078275 + AT_rich Low_complexity Low_complexity 1 59 0 2243 121 0 0 chrX 10521683 10521989 -152077941 - AluSx SINE Alu -6 306 1 591 299 105 41 chrX 10522461 10522527 -152077403 + L1ME LINE L1 4862 4922 -1242 2339 67 0 0 chrX 10522527 10522839 -152077091 + AluY SINE Alu 1 312 0 591 299 105 41 chrX 10522839 10523343 -152076587 + L1ME LINE L1 4922 5465 -699 484 261 67 28 chrX 10523512 10523795 -152076135 + HAL1 LINE L1 1032 1325 -1182 25 31 0 0 chrX 10525142 10525174 -152074756 + AT_rich Low_complexity Low_complexity 1 32 0 552 202 16 16 chrX 10525175 10525296 -152074634 - MER20 DNA MER1_type 0 219 99 865 223 132 70 chrX 10525296 10525843 -152074087 - MER34C LTR ERV1 -1 584 4 195 320 154 0 chrX 10526491 10526569 -152073361 + L2 LINE L2 3147 3236 -36 234 260 0 0 chrX 10529316 10529366 -152070564 - L2 LINE L2 0 3313 3264 2320 100 3 6 chrX 10529518 10529829 -152070101 - AluSg SINE Alu 0 310 1 1757 244 96 43 chrX 10530173 10530727 -152069203 - MLT1E LTR MaLR -4 589 7 1252 183 24 45 chrX 10531008 10531297 -152068633 - MLT1A1 LTR MaLR -80 285 3 943 181 0 0 chrX 10531594 10531738 -152068192 - FAM SINE Alu -22 163 20 222 359 70 0 chrX 10532467 10532595 -152067335 + MIR SINE MIR 58 194 -68 3060 111 99 32 chrX 10532946 10533406 -152066524 + LTR49 LTR ERV1 2 507 -88 1404 161 165 0 chrX 10533406 10533661 -152066269 + AluJb SINE Alu 1 297 -5 3060 111 99 32 chrX 10533661 10533757 -152066173 + LTR49 LTR ERV1 507 595 0 2480 199 102 7 chrX 10533813 10534410 -152065520 - MLT1E1 LTR MaLR 0 654 1 1004 171 40 11 chrX 10534437 10534612 -152065318 + FAM SINE Alu 1 44 -5 206 238 0 0 chrX 10535640 10535682 -152064248 + A-rich Low_complexity Low_complexity 4 45 0 479 253 79 75 chrX 10535806 10535848 -152064082 + MER112 DNA MER1_type 7 47 -213 1853 165 0 10 chrX 10535848 10536145 -152063785 + AluJb SINE Alu 1 294 -18 479 253 79 75 chrX 10536145 10536355 -152063575 + MER112 DNA MER1_type 47 260 0 297 0 0 0 chrX 10539389 10539422 -152060508 + (TA)n Simple_repeat Simple_repeat 2 34 0 314 258 32 16 chrX 10539500 10539624 -152060306 + L1MC4a LINE L1 5788 5913 -1895 358 128 0 26 chrX 10539624 10539702 -152060228 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1882 135 0 11 chrX 10539702 10539983 -152059947 - AluJb SINE Alu -34 278 1 916 216 59 24 chrX 10540520 10540775 -152059155 + L1MC4a LINE L1 6555 6818 -990 2485 213 89 33 chrX 10540792 10541695 -152058235 + L1MC5 LINE L1 6961 7913 -48 381 272 14 14 chrX 10541876 10542023 -152057907 + (TA)n Simple_repeat Simple_repeat 1 147 0 211 214 71 0 chrX 10542528 10542570 -152057360 + MIR SINE MIR 79 123 -139 502 258 52 31 chrX 10543466 10543660 -152056270 - MER58 DNA MER1_type -130 211 14 559 228 24 0 chrX 10543664 10543787 -152056143 + MIR SINE MIR 21 146 -116 22 35 0 0 chrX 10543846 10543875 -152056055 + AT_rich Low_complexity Low_complexity 1 29 0 910 150 56 19 chrX 10543961 10544121 -152055809 - FRAM SINE Alu 0 166 1 2095 127 10 3 chrX 10544849 10545149 -152054781 + AluSx SINE Alu 1 302 -10 1364 109 95 5 chrX 10545960 10546170 -152053760 + MER30 DNA MER1_type 1 229 -1 3978 28 4 0 chrX 10547084 10547556 -152052374 - L1PA5 LINE L1 -6 6148 5675 428 177 133 26 chrX 10547701 10547780 -152052150 - LTR40b LTR ERVL -7 455 359 321 26 0 0 chrX 10547780 10547818 -152052112 + (CA)n Simple_repeat Simple_repeat 2 39 0 428 177 133 26 chrX 10547818 10547851 -152052079 - LTR40b LTR ERVL -103 359 331 1716 188 19 40 chrX 10548449 10548821 -152051109 - MLT1A1 LTR MaLR 0 365 2 923 179 97 0 chrX 10549251 10549370 -152050560 + L1MD3 LINE L1 6760 6866 -1129 198 0 0 0 chrX 10549370 10549392 -152050538 + (GA)n Simple_repeat Simple_repeat 1 22 0 923 179 97 0 chrX 10549392 10549467 -152050463 + L1MD3 LINE L1 6866 6973 -1022 1160 83 0 6 chrX 10549475 10549632 -152050298 + AluSg/x SINE Alu 137 292 -20 607 109 44 36 chrX 10549638 10549775 -152050155 + L1MC3 LINE L1 6961 7098 -687 284 253 35 11 chrX 10549776 10549863 -152050067 + MLT1F1 LTR MaLR 37 125 -442 2899 171 19 12 chrX 10549863 10550449 -152049481 + L1MD3 LINE L1 7404 7993 -2 214 233 12 58 chrX 10553038 10553124 -152046806 + MIR SINE MIR 89 170 -92 297 0 0 0 chrX 10553912 10553945 -152045985 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1874 143 29 0 chrX 10553947 10554220 -152045710 - AluSg SINE Alu -29 281 1 509 150 20 30 chrX 10554274 10554374 -152045556 - Tigger7 DNA MER2_type 0 2587 2489 * 1229 220 11 8 chrX 10554372 10554636 -152045294 - Tigger7 DNA MER2_type -2220 267 3 878 278 27 5 chrX 10555311 10555534 -152044396 + MIR SINE MIR 29 256 -6 1967 60 0 0 chrX 10555537 10555788 -152044142 + L1PA13 LINE L1 5911 6161 -2 358 318 84 38 chrX 10559443 10559682 -152040248 + L1M4 LINE L1 4562 4811 -1335 1817 214 100 31 chrX 10559962 10560660 -152039270 + Charlie7 DNA MER1_type 1852 2597 -15 407 277 13 32 chrX 10561887 10562042 -152037888 + LTR33 LTR ERVL 63 214 -307 272 299 19 0 chrX 10562025 10562132 -152037798 + LTR33 LTR ERVL 327 435 -86 * 441 278 233 29 chrX 10564360 10564734 -152035196 + L2 LINE L2 2526 2975 -339 273 313 0 50 chrX 10565010 10565109 -152034821 + MIR SINE MIR 167 260 -2 810 207 23 6 chrX 10565324 10565498 -152034432 - MER5B DNA MER1_type -1 177 1 282 206 0 0 chrX 10565717 10565780 -152034150 + CT-rich Low_complexity Low_complexity 2 64 0 418 190 93 0 chrX 10566427 10566536 -152033394 + MER45A DNA AcHobo 58 176 -2 248 285 126 53 chrX 10566592 10566743 -152033187 + MIR SINE MIR 83 244 -18 189 317 58 39 chrX 10567192 10567296 -152032634 + MIR SINE MIR 37 142 -66 1063 276 35 57 chrX 10567692 10567854 -152032076 - L2 LINE L2 0 3313 3149 2613 129 14 36 chrX 10567854 10568296 -152031634 - Tigger2a DNA MER2_type -2 432 1 1063 276 35 57 chrX 10568296 10568535 -152031395 - L2 LINE L2 -164 3149 2921 2134 121 3 3 chrX 10569630 10569927 -152030003 + AluSx SINE Alu 1 297 -15 24 0 0 0 chrX 10570345 10570369 -152029561 + AT_rich Low_complexity Low_complexity 1 24 0 586 282 99 63 chrX 10570483 10570735 -152029195 + MIR SINE MIR 2 262 0 300 267 0 33 chrX 10571048 10571138 -152028792 - L1ME4a LINE L1 -38 6083 5997 281 245 41 10 chrX 10571176 10571274 -152028656 + (CATATA)n Simple_repeat Simple_repeat 5 105 0 217 303 26 13 chrX 10572615 10572691 -152027239 + MIR SINE MIR 180 256 -6 1231 166 5 10 chrX 10572728 10572860 -152027070 + AluJo SINE Alu 1 134 -178 2355 60 0 0 chrX 10572860 10573173 -152026757 + AluY SINE Alu 1 313 0 1231 166 5 10 chrX 10573173 10573244 -152026686 + AluJo SINE Alu 134 204 -108 634 134 0 18 chrX 10573249 10573361 -152026569 - 7SK RNA RNA -83 110 1 353 276 15 52 chrX 10573363 10573497 -152026433 + MER90 LTR ERV1 486 614 0 314 220 49 4 chrX 10573560 10573690 -152026240 + MER5A DNA MER1_type 11 189 0 515 225 9 18 chrX 10573711 10573822 -152026108 - MER5B DNA MER1_type -35 143 34 1842 175 39 11 chrX 10574510 10574865 -152025065 + MLT1A1 LTR MaLR 1 365 0 1006 216 88 37 chrX 10575560 10575833 -152024097 + MER58B DNA MER1_type 2 288 -53 1844 169 77 12 chrX 10576201 10576524 -152023406 + Charlie1b DNA MER1_type 1 358 -2403 2203 122 10 0 chrX 10576524 10576828 -152023102 - AluSx SINE Alu -5 307 1 1844 169 77 12 chrX 10576828 10576918 -152023012 + Charlie1b DNA MER1_type 358 441 -82 1947 151 3 35 chrX 10577018 10577336 -152022594 - AluJb SINE Alu -4 308 1 2050 188 81 43 chrX 10578064 10578547 -152021383 + MLT1D LTR MaLR 5 505 0 292 265 143 10 chrX 10579545 10579643 -152020287 + L2 LINE L2 3150 3260 -12 1641 205 25 11 chrX 10580391 10580757 -152019173 - MLT1A2 LTR MaLR -3 371 1 277 234 11 53 chrX 10581220 10581265 -152018665 + (TATATG)n Simple_repeat Simple_repeat 6 46 -49 441 251 75 48 chrX 10581265 10581492 -152018438 - MER106A DNA MER1_type -3 233 1 277 234 11 53 chrX 10581492 10581540 -152018390 + (TATATG)n Simple_repeat Simple_repeat 46 95 0 2096 243 53 21 chrX 10582642 10583023 -152016907 + L1ME LINE L1 4 418 -5652 3820 152 52 12 chrX 10583023 10583701 -152016229 - MER44D DNA MER2_type 0 705 1 2096 243 53 21 chrX 10583701 10583993 -152015937 + L1ME LINE L1 418 699 -5371 350 205 128 0 chrX 10584007 10584124 -152015806 + L1ME LINE L1 757 888 -5182 1420 236 74 7 chrX 10584298 10584784 -152015146 + L2 LINE L2 2789 3310 -3 1605 124 18 0 chrX 10584934 10585160 -152014770 - AluSq SINE Alu -83 230 1 2299 92 3 0 chrX 10585170 10585462 -152014468 - AluSg SINE Alu -17 293 1 702 170 121 22 chrX 10585632 10585814 -152014116 + MER33 DNA MER1_type 1 192 -91 2372 90 0 0 chrX 10586919 10587218 -152012712 - AluSg SINE Alu -11 299 1 3321 150 54 9 chrX 10587227 10587589 -152012341 - L1MB5 LINE L1 0 6174 5775 270 0 0 0 chrX 10587589 10587619 -152012311 + (TG)n Simple_repeat Simple_repeat 2 31 0 3321 150 54 9 chrX 10587619 10587828 -152012102 - L1MB5 LINE L1 -399 5775 5577 2012 117 3 10 chrX 10587930 10588221 -152011709 - AluSx SINE Alu -10 302 14 557 224 101 36 chrX 10590209 10590428 -152009502 + L1MC4 LINE L1 7176 7408 -634 28 0 0 0 chrX 10590690 10590718 -152009212 + AT_rich Low_complexity Low_complexity 1 28 0 199 330 130 20 chrX 10591602 10591702 -152008228 - L2 LINE L2 0 3272 3162 2154 261 104 15 chrX 10592660 10593342 -152006588 + L1M3a LINE L1 349 1091 -5212 1043 300 126 20 chrX 10593345 10594080 -152005850 + L1M3a LINE L1 530 1162 -5141 2728 215 42 120 chrX 10594124 10594244 -152005686 + L1M3a LINE L1 1029 1157 -5225 1921 156 0 28 chrX 10594244 10594565 -152005365 + AluSx SINE Alu 1 312 0 2728 215 42 120 chrX 10594565 10594845 -152005085 + L1M3a LINE L1 1157 1457 -4925 1731 182 30 3 chrX 10594845 10595147 -152004783 + AluJb SINE Alu 1 310 -2 2728 215 42 120 chrX 10595147 10595221 -152004709 + L1M3a LINE L1 1457 1535 -4847 1048 106 12 6 chrX 10595221 10595391 -152004539 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 2728 215 42 120 chrX 10595391 10596019 -152003911 + L1M3a LINE L1 1535 1674 -4708 797 192 0 0 chrX 10596019 10596144 -152003786 + FLAM_A SINE Alu 1 125 -8 2728 215 42 120 chrX 10596144 10596778 -152003152 + L1M3a LINE L1 1674 2356 -4026 381 176 0 47 chrX 10596820 10596905 -152003025 + L1 LINE L1 1669 1749 -4564 * 1211 162 8 32 chrX 10596887 10597140 -152002790 + L1 LINE L1 5331 5577 -773 6030 151 13 10 chrX 10597248 10598345 -152001585 + L1MA4 LINE L1 5197 6296 -4 843 264 0 46 chrX 10598340 10598450 -152001480 + L1M1 LINE L1 2558 2671 -4894 * 2051 125 14 10 chrX 10598450 10598746 -152001184 + AluJo SINE Alu 1 297 -15 843 264 0 46 chrX 10598746 10598919 -152001011 + L1M1 LINE L1 2671 2828 -4737 2292 96 14 0 chrX 10599400 10599693 -152000237 + AluSx SINE Alu 1 297 -15 2179 144 42 31 chrX 10601217 10601577 -151998353 - THE1B LTR MaLR 0 364 1 578 312 60 14 chrX 10601821 10602039 -151997891 + MIR SINE MIR 35 262 0 327 294 39 0 chrX 10602058 10602203 -151997727 + MIR SINE MIR 62 212 -50 1049 202 17 56 chrX 10602612 10602845 -151997085 - MER58A DNA MER1_type 0 224 1 562 306 117 37 chrX 10603229 10603638 -151996292 - MLT1J2 LTR MaLR -8 442 1 1244 88 0 33 chrX 10603815 10603997 -151995933 - L1PA7 LINE L1 -14 6140 5965 296 258 62 10 chrX 10604790 10604887 -151995043 - MER20B DNA MER1_type -606 177 76 194 301 54 21 chrX 10605587 10605680 -151994250 - MIR SINE MIR -159 103 8 2532 81 0 0 chrX 10606871 10607180 -151992750 - AluSx SINE Alu -3 309 1 1205 316 33 24 chrX 10607239 10607818 -151992112 - MLT1K LTR MaLR -3 585 2 702 166 66 91 chrX 10607894 10608135 -151991795 - L1MC5 LINE L1 -74 7887 7653 41762 57 15 2 chrX 10608240 10611973 -151987957 - L1P2 LINE L1 -584 5571 1741 2499 64 0 0 chrX 10611973 10612268 -151987662 + AluSp SINE Alu 1 295 -18 41762 57 15 2 chrX 10612268 10614022 -151985908 - L1P2 LINE L1 -4414 1741 11 1715 146 8 0 chrX 10614195 10614463 -151985467 + AluJb SINE Alu 40 309 -3 21 0 0 0 chrX 10614810 10614831 -151985099 + AT_rich Low_complexity Low_complexity 1 21 0 1754 120 4 29 chrX 10614965 10615240 -151984690 + AluSx SINE Alu 38 305 -7 304 202 228 35 chrX 10615240 10615354 -151984576 - MER3 DNA MER1_type -73 136 1 480 250 122 53 chrX 10615576 10615764 -151984166 + MIR3 SINE MIR 2 202 -6 180 353 168 37 chrX 10617300 10617490 -151982440 + MIR SINE MIR 33 247 -15 3544 145 25 58 chrX 10617598 10617779 -151982151 - L1MA7 LINE L1 0 6291 6106 2147 114 3 3 chrX 10617779 10618077 -151981853 - AluSx SINE Alu -14 298 1 3544 145 25 58 chrX 10618077 10618417 -151981513 - L1MA7 LINE L1 -185 6106 5756 297 0 0 0 chrX 10618417 10618450 -151981480 + (TA)n Simple_repeat Simple_repeat 1 33 0 3544 145 25 58 chrX 10618450 10618634 -151981296 - L1MA7 LINE L1 -535 5756 5607 2424 87 7 7 chrX 10618634 10618944 -151980986 - AluSg SINE Alu 0 310 1 3544 145 25 58 chrX 10618944 10618965 -151980965 - L1MA7 LINE L1 -684 5607 5587 952 211 14 19 chrX 10619005 10619214 -151980716 - L1ME3 LINE L1 -1 6161 5954 1758 184 0 7 chrX 10622736 10623035 -151976895 - AluJb SINE Alu -15 297 1 602 299 45 0 chrX 10623241 10623395 -151976535 + MIR3 SINE MIR 37 197 -11 301 329 50 50 chrX 10623580 10623720 -151976210 - L2 LINE L2 0 3272 3133 895 167 45 81 chrX 10623769 10623991 -151975939 - MER20 DNA MER1_type 0 219 6 555 298 63 21 chrX 10624316 10624554 -151975376 - L2 LINE L2 -3 3310 3063 1208 0 21 0 chrX 10624689 10624831 -151975099 + (CTATG)n Simple_repeat Simple_repeat 3 147 0 378 0 0 0 chrX 10627619 10627661 -151972269 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 65 0 0 chrX 10627672 10627718 -151972212 + AT_rich Low_complexity Low_complexity 1 46 0 189 154 0 0 chrX 10630618 10630657 -151969273 + (TG)n Simple_repeat Simple_repeat 2 40 0 234 322 26 26 chrX 10631171 10631286 -151968644 - L2 LINE L2 0 3272 3158 1103 195 96 54 chrX 10631550 10632091 -151967839 + MLT1E3 LTR MaLR 1 622 -2 233 345 46 0 chrX 10632326 10632413 -151967517 - L2 LINE L2 -41 3231 3141 653 200 18 24 chrX 10632668 10632833 -151967097 + MER96B DNA MER1_type? 244 407 -10 651 241 37 6 chrX 10634846 10635008 -151964922 - MER5B DNA MER1_type -5 173 7 376 203 76 0 chrX 10635273 10635352 -151964578 - MER53 DNA DNA 0 189 105 372 229 72 0 chrX 10635285 10635368 -151964562 + MER53 DNA DNA 23 111 -78 * 256 116 23 0 chrX 10635367 10635410 -151964520 + MER53 DNA DNA 68 111 -78 * 623 124 22 66 chrX 10635407 10635544 -151964386 - MER53 DNA DNA -58 131 1 219 303 66 0 chrX 10635577 10635653 -151964277 - MIR SINE MIR -11 251 171 908 144 0 0 chrX 10636983 10637115 -151962815 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 10637360 10637395 -151962535 + AT_rich Low_complexity Low_complexity 1 35 0 273 365 18 41 chrX 10637502 10637721 -151962209 + L2 LINE L2 2857 3070 -202 43 35 0 0 chrX 10638069 10638126 -151961804 + AT_rich Low_complexity Low_complexity 1 57 0 2198 128 0 0 chrX 10638401 10638707 -151961223 - AluSx SINE Alu -6 306 1 223 175 235 0 chrX 10639099 10639188 -151960742 - MIR SINE MIR -78 130 1 203 297 45 90 chrX 10639554 10639820 -151960110 + L2 LINE L2 2462 2715 -599 197 373 45 0 chrX 10640581 10640691 -151959239 + L2 LINE L2 3141 3255 -17 233 345 42 47 chrX 10640742 10640933 -151958997 + L2 LINE L2 2568 2757 -557 198 315 45 84 chrX 10641067 10641245 -151958685 + L2 LINE L2 2933 3103 -169 182 250 313 0 chrX 10641329 10641393 -151958537 + L2 LINE L2 3189 3272 0 218 366 52 0 chrX 10641955 10642089 -151957841 - MIR3 SINE MIR -61 147 7 2008 205 12 2 chrX 10642708 10643112 -151956818 + MER74A LTR ERVL 121 528 -30 7974 38 1 0 chrX 10644054 10645097 -151954833 + L1PA5 LINE L1 5111 6154 0 21 36 0 0 chrX 10645097 10645125 -151954805 + AT_rich Low_complexity Low_complexity 1 28 0 896 199 187 19 chrX 10645306 10645608 -151954322 + MLT1C LTR MaLR 133 461 -6 2346 109 0 6 chrX 10647536 10647848 -151952082 + AluSg SINE Alu 1 310 0 2033 206 74 0 chrX 10649109 10649555 -151950375 + L1MB8 LINE L1 5699 6177 -1 519 227 62 8 chrX 10649877 10650005 -151949925 + MIR SINE MIR 128 262 0 465 214 0 0 chrX 10650445 10650534 -151949396 + MER3 DNA MER1_type 1 89 -120 499 152 22 0 chrX 10650618 10650710 -151949220 - L1MB7 LINE L1 0 6184 6091 970 166 44 6 chrX 10650711 10650892 -151949038 - MLT1A1 LTR MaLR -173 192 5 2985 137 126 9 chrX 10650990 10651523 -151948407 + LTR49 LTR ERV1 1 595 0 2004 131 3 17 chrX 10651824 10652121 -151947809 + AluJb SINE Alu 1 293 -19 407 315 61 30 chrX 10653265 10653462 -151946468 + MIR SINE MIR 60 262 0 792 213 11 44 chrX 10653608 10653791 -151946139 - MER69A DNA AcHobo 0 177 1 309 224 24 35 chrX 10654659 10654744 -151945186 + L1ME3A LINE L1 5415 5498 -676 2535 244 37 18 chrX 10655124 10655801 -151944129 + L1ME3A LINE L1 5476 6165 -5 2304 88 7 0 chrX 10656116 10656410 -151943520 - AluSc SINE Alu -13 296 1 23 0 0 0 chrX 10657151 10657174 -151942756 + AT_rich Low_complexity Low_complexity 1 23 0 526 264 140 63 chrX 10657417 10657830 -151942100 - HAL1b LINE L1 -428 920 476 180 0 0 0 chrX 10658694 10658714 -151941216 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chrX 10659537 10659558 -151940372 + AT_rich Low_complexity Low_complexity 1 21 0 1911 160 10 3 chrX 10659768 10660075 -151939855 + AluJo SINE Alu 1 309 -3 27 0 0 0 chrX 10660133 10660160 -151939770 + AT_rich Low_complexity Low_complexity 1 27 0 242 339 88 10 chrX 10660755 10660916 -151939014 - MIR SINE MIR -67 141 13 372 336 8 8 chrX 10662469 10662594 -151937336 + MIR3 SINE MIR 53 177 -31 1904 201 40 50 chrX 10662689 10663001 -151936929 + Charlie4a DNA MER1_type 17 331 -1630 1101 233 9 5 chrX 10663001 10663216 -151936714 + MER20 DNA MER1_type 1 216 -3 1904 201 40 50 chrX 10663216 10663363 -151936567 + Charlie4a DNA MER1_type 331 478 -1483 2266 137 80 0 chrX 10663363 10663700 -151936230 + THE1B LTR MaLR 1 364 0 12905 81 4 1 chrX 10663700 10665275 -151934655 + THE1B-int LTR MaLR 1 1580 0 1984 110 64 135 chrX 10665275 10665667 -151934263 + THE1B LTR MaLR 1 364 0 1904 201 40 50 chrX 10665667 10665701 -151934229 + Charlie4a DNA MER1_type 475 508 0 311 289 22 0 chrX 10666272 10666362 -151933568 - L1MC4a LINE L1 -1872 5936 5845 1590 161 95 3 chrX 10666437 10666722 -151933208 - AluJo SINE Alu -1 311 1 312 260 14 0 chrX 10667984 10668057 -151931873 - MIR SINE MIR -141 121 48 2277 105 7 0 chrX 10668203 10668509 -151931421 + AluSx SINE Alu 1 308 -4 24 0 0 0 chrX 10668572 10668596 -151931334 + AT_rich Low_complexity Low_complexity 1 24 0 803 168 0 8 chrX 10669087 10669206 -151930724 + FLAM_A SINE Alu 1 118 -15 543 296 62 16 chrX 10669283 10669540 -151930390 - LTR16C LTR ERVL 0 491 223 334 301 88 9 chrX 10670144 10670257 -151929673 - MIR SINE MIR -33 229 108 520 313 25 95 chrX 10670269 10670595 -151929335 - L2 LINE L2 -4 3268 2966 993 226 72 0 chrX 10670723 10670808 -151929122 + MER58A DNA MER1_type 2 79 -2341 1698 206 0 3 chrX 10670808 10671118 -151928812 + AluJb SINE Alu 3 311 -1 993 226 72 0 chrX 10671118 10671240 -151928690 + MER58A DNA MER1_type 79 224 0 773 306 65 45 chrX 10671254 10671329 -151928601 - L2 LINE L2 -528 2786 2714 1851 122 61 7 chrX 10671329 10671608 -151928322 - AluSx SINE Alu -17 295 2 773 306 65 45 chrX 10671608 10671931 -151927999 - L2 LINE L2 -600 2714 2380 1367 167 0 9 chrX 10672253 10672474 -151927456 - AluJo SINE Alu -9 303 85 2461 91 3 0 chrX 10673535 10673842 -151926088 - AluSp SINE Alu -5 308 1 1574 270 24 0 chrX 10675362 10675743 -151924187 - LTR16C LTR ERVL -2 489 100 229 388 97 22 chrX 10675883 10676339 -151923591 + L2 LINE L2 385 874 -2440 379 293 32 8 chrX 10676741 10676864 -151923066 + MIR SINE MIR 92 217 -45 371 242 60 54 chrX 10676984 10677133 -151922797 + MIR SINE MIR 28 177 -85 279 308 44 25 chrX 10677787 10677946 -151921984 + MIR SINE MIR 97 258 -4 457 276 8 8 chrX 10678539 10678662 -151921268 + L2 LINE L2 3187 3309 -4 207 69 0 0 chrX 10679667 10679696 -151920234 + (TTA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chrX 10679853 10679883 -151920047 + AT_rich Low_complexity Low_complexity 1 30 0 237 192 39 19 chrX 10680472 10680524 -151919406 - MLT1H LTR MaLR 0 549 497 1506 190 7 20 chrX 10680536 10680836 -151919094 - L1MB4 LINE L1 0 6180 5885 906 250 110 25 chrX 10680848 10681204 -151918726 - MLT1H LTR MaLR -142 407 22 513 233 16 31 chrX 10681235 10681364 -151918566 + MIR SINE MIR 54 180 -82 252 0 0 0 chrX 10681789 10681817 -151918113 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 2263 97 3 13 chrX 10681951 10682260 -151917670 - AluSp SINE Alu -7 306 1 304 252 30 96 chrX 10682271 10682406 -151917524 - MIR3 SINE MIR -48 160 35 226 294 20 10 chrX 10682652 10682754 -151917176 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 329 299 74 7 chrX 10682780 10682923 -151917007 + MIR SINE MIR 35 187 -62 2393 90 0 0 chrX 10733383 10733682 -151866248 - AluSg SINE Alu -11 299 1 884 137 17 105 chrX 10733860 10734124 -151865806 + L1M3 LINE L1 5387 5609 -574 2185 130 0 0 chrX 10734124 10734432 -151865498 + AluSx SINE Alu 1 308 -4 289 276 203 11 chrX 10734442 10734703 -151865227 - L2 LINE L2 -609 2705 2395 812 286 25 0 chrX 10734751 10734954 -151864976 - MER58A DNA MER1_type -16 208 1 380 293 115 13 chrX 10734962 10735119 -151864811 - L2 LINE L2 -1024 2290 2118 438 256 137 21 chrX 10735268 10735428 -151864502 + MIR SINE MIR 2 182 -62 475 246 64 115 chrX 10736028 10736164 -151863766 - L1MC4 LINE L1 -966 7076 6935 660 208 24 8 chrX 10736164 10736289 -151863641 - FLAM_A SINE Alu -6 127 1 475 246 64 115 chrX 10736289 10736465 -151863465 - L1MC4 LINE L1 -1107 6935 6780 329 251 101 84 chrX 10736459 10736638 -151863292 + L1MC5 LINE L1 6999 7180 -781 * 4156 172 28 44 chrX 10736778 10737568 -151862362 - L1MB8 LINE L1 -1 6177 5376 2343 99 0 3 chrX 10737568 10737881 -151862049 - AluSx SINE Alu 0 312 1 4156 172 28 44 chrX 10737881 10737960 -151861970 - L1MB8 LINE L1 -802 5376 5297 3760 136 80 0 chrX 10737960 10738561 -151861369 - L1MC1 LINE L1 0 6333 5685 4156 172 28 44 chrX 10738561 10738686 -151861244 - L1MB8 LINE L1 -881 5297 5172 2418 79 0 10 chrX 10738686 10738990 -151860940 - AluSg SINE Alu -9 301 1 4156 172 28 44 chrX 10738990 10739181 -151860749 - L1MB8 LINE L1 -1006 5172 5007 1443 102 20 0 chrX 10739204 10739496 -151860434 + AluJb SINE Alu 110 405 0 446 167 118 0 chrX 10739496 10739598 -151860332 - L1MB8 LINE L1 -1107 5039 4926 225 271 71 12 chrX 10739643 10739728 -151860202 + L1MC4 LINE L1 7899 7988 -54 1445 180 46 4 chrX 10740000 10740312 -151859618 + MER33 DNA MER1_type 1 313 -11 276 330 52 0 chrX 10740385 10740482 -151859448 + MIR SINE MIR 19 120 -88 204 296 28 14 chrX 10740501 10740572 -151859358 - L2 LINE L2 -4 3309 3238 258 158 0 0 chrX 10740917 10740955 -151858975 + MLT1I LTR MaLR 98 135 -274 421 193 45 23 chrX 10740999 10741087 -151858843 + MLT1G1 LTR MaLR 224 313 -282 1317 158 29 0 chrX 10741112 10741321 -151858609 + MER20 DNA MER1_type 2 216 -3 1503 231 43 5 chrX 10742815 10743187 -151856743 - MER58D DNA MER1_type 0 386 1 297 250 9 37 chrX 10743443 10743551 -151856379 + C-rich Low_complexity Low_complexity 4 108 0 246 256 0 23 chrX 10743559 10743645 -151856285 + (CCG)n Simple_repeat Simple_repeat 2 85 0 23 0 0 0 chrX 10743791 10743814 -151856116 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 10743922 10743951 -151855979 + GC_rich Low_complexity Low_complexity 1 29 0 202 312 130 7 chrX 10744280 10744434 -151855496 - MER5B DNA MER1_type -5 173 1 862 181 82 16 chrX 10744835 10745017 -151854913 + L1M4 LINE L1 4901 5094 -1052 1465 268 92 15 chrX 10746228 10746706 -151853224 - MLT1G1 LTR MaLR -7 588 74 437 167 26 0 chrX 10747027 10747105 -151852825 - MER58 DNA MER1_type 0 2420 2341 1366 174 156 46 chrX 10747110 10747501 -151852429 - MLT1D LTR MaLR -70 435 2 237 195 0 0 chrX 10747502 10747543 -151852387 - MER58 DNA MER1_type -137 78 38 2353 171 10 10 chrX 10747593 10747984 -151851946 - MSTD LTR MaLR -5 391 1 896 147 0 29 chrX 10748213 10748349 -151851581 - FLAM_A SINE Alu -1 132 1 2375 79 16 3 chrX 10748384 10748687 -151851243 - AluSp SINE Alu -6 307 1 1081 156 9 73 chrX 10748974 10749192 -151850738 - MER46A DNA MER2_type -1 235 32 2120 117 3 10 chrX 10749248 10749547 -151850383 + AluSx SINE Alu 1 297 -15 1506 261 156 31 chrX 10750002 10750785 -151849145 + HAL1 LINE L1 1627 2507 0 2920 158 66 19 chrX 10750800 10751331 -151848599 + MER68 LTR ERV1 3 558 -4 1224 172 21 21 chrX 10751835 10752073 -151847857 + L1MD2 LINE L1 6122 6359 0 1530 206 108 30 chrX 10752258 10752691 -151847239 - MLT1C LTR MaLR 0 467 1 1534 156 31 49 chrX 10753076 10753364 -151846566 - MER58 DNA MER1_type -58 283 1 519 17 0 0 chrX 10753394 10753454 -151846476 + (TG)n Simple_repeat Simple_repeat 2 61 0 281 269 201 52 chrX 10753467 10753716 -151846214 - L3 LINE CR1 -640 937 652 2338 86 0 7 chrX 10753782 10754095 -151845835 - AluSx SINE Alu 0 312 1 1975 108 21 7 chrX 10754512 10754826 -151845104 - AluSq SINE Alu 0 318 1 1543 218 121 20 chrX 10755199 10755475 -151844455 - MLT1D LTR MaLR 0 505 258 1897 137 3 36 chrX 10755475 10755782 -151844148 - AluJo SINE Alu -14 298 2 1543 218 121 20 chrX 10755782 10755960 -151843970 - MLT1D LTR MaLR -247 258 5 465 267 33 0 chrX 10756037 10756157 -151843773 + MER94 DNA DNA 10 133 -1 2298 109 0 0 chrX 10756335 10756628 -151843302 - AluSx SINE Alu -19 293 1 241 260 68 14 chrX 10757299 10757372 -151842558 + L1ME LINE L1 5748 5824 -297 331 314 28 28 chrX 10757407 10757574 -151842356 + MIR SINE MIR 13 180 -28 1774 220 15 3 chrX 10757584 10757921 -151842009 - MER58B DNA MER1_type 0 341 1 2401 78 0 16 chrX 10757977 10758285 -151841645 + AluSx SINE Alu 1 303 -9 455 86 71 14 chrX 10758923 10758993 -151840937 - MSTD LTR MaLR -2 394 321 2322 79 0 7 chrX 10758994 10759285 -151840645 + AluSq SINE Alu 2 290 -23 1623 155 51 83 chrX 10759725 10760120 -151839810 + MLT2D LTR ERVL 4 480 -40 286 181 48 0 chrX 10760126 10760209 -151839721 + (TATG)n Simple_repeat Simple_repeat 1 87 0 326 134 0 5 chrX 10760209 10760223 -151839707 + MLT2B1 LTR ERVL 391 404 -116 186 43 0 0 chrX 10760223 10760246 -151839684 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 10760246 10760287 -151839643 + MLT2B1 LTR ERVL 404 520 0 349 223 106 0 chrX 10760566 10760660 -151839270 - Charlie7 DNA MER1_type -2507 105 2 24 0 0 0 chrX 10761008 10761032 -151838898 + AT_rich Low_complexity Low_complexity 1 24 0 213 289 0 0 chrX 10761375 10761427 -151838503 + MER91B DNA MER1_type 79 130 -60 435 232 11 42 chrX 10761455 10761550 -151838380 + MER91B DNA MER1_type 98 189 -1 215 237 0 34 chrX 10761670 10761729 -151838201 - L2 LINE L2 0 3313 3257 302 271 161 9 chrX 10761973 10762116 -151837814 - MIR SINE MIR -65 143 28 21 0 0 0 chrX 10762605 10762626 -151837304 + AT_rich Low_complexity Low_complexity 1 21 0 593 265 111 20 chrX 10762675 10762980 -151836950 - L1MC4 LINE L1 0 8042 7604 627 302 86 7 chrX 10762985 10763263 -151836667 - MLT1H LTR MaLR 0 549 250 2590 194 18 22 chrX 10763727 10764237 -151835693 - LTR31 LTR ERV1 -8 611 104 1841 163 17 0 chrX 10764278 10764567 -151835363 - AluJo SINE Alu -18 294 1 208 331 110 55 chrX 10764885 10765012 -151834918 + MIR SINE MIR 59 192 -70 474 301 56 20 chrX 10765319 10765515 -151834415 - MIR SINE MIR 0 262 60 320 317 50 25 chrX 10765980 10766100 -151833830 - L2 LINE L2 -1 3271 3149 290 297 42 8 chrX 10766226 10766344 -151833586 - MIR SINE MIR -121 141 20 31 76 0 0 chrX 10769919 10769985 -151829945 + AT_rich Low_complexity Low_complexity 1 66 0 306 324 19 0 chrX 10770063 10770168 -151829762 - MIR SINE MIR -5 257 151 629 279 43 31 chrX 10770179 10770437 -151829493 + MIR SINE MIR 2 262 0 263 113 97 16 chrX 10770852 10770914 -151829016 + Charlie7 DNA MER1_type 2460 2526 -86 216 97 0 0 chrX 10770914 10770945 -151828985 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 624 236 130 20 chrX 10771082 10771374 -151828556 - L1MC5 LINE L1 -7 7954 7631 263 254 48 24 chrX 10771379 10771505 -151828425 - L1ME4a LINE L1 -53 6068 5940 360 155 18 31 chrX 10772131 10772205 -151827725 + AluSg/x SINE Alu 120 180 -120 205 200 0 0 chrX 10772214 10772254 -151827676 + A-rich Low_complexity Low_complexity 1 40 0 240 111 0 0 chrX 10772335 10772371 -151827559 + (TG)n Simple_repeat Simple_repeat 1 36 0 306 279 19 39 chrX 10773201 10773305 -151826625 - L2 LINE L2 0 3272 3171 5326 174 52 14 chrX 10773385 10774424 -151825506 - Tigger6a DNA MER2_type 0 1083 6 977 232 14 5 chrX 10774438 10774645 -151825285 + MER3 DNA MER1_type 1 209 0 2340 198 105 70 chrX 10775547 10776177 -151823753 - MLT1E1 LTR MaLR 0 654 3 5869 83 39 10 chrX 10776882 10777673 -151822257 + L1MA2 LINE L1 5491 6304 0 531 283 63 19 chrX 10777939 10778144 -151821786 - MIR SINE MIR 0 262 49 236 257 95 63 chrX 10778215 10778468 -151821462 - HAL1 LINE L1 -25 2482 2222 1201 168 22 0 chrX 10778921 10779106 -151820824 + MER5A DNA MER1_type 1 189 0 2189 97 7 7 chrX 10779647 10779946 -151819984 - AluSx SINE Alu -13 299 1 1528 40 0 0 chrX 10779956 10780129 -151819801 - AluY SINE Alu -8 303 131 2547 64 0 6 chrX 10780273 10780584 -151819346 + AluSp SINE Alu 1 309 -4 640 242 91 80 chrX 10780611 10780875 -151819055 - MLT1H1 LTR MaLR -288 267 1 310 272 62 68 chrX 10780892 10781054 -151818876 - HAL1 LINE L1 -550 1957 1797 554 319 86 26 chrX 10781093 10781277 -151818653 - HAL1 LINE L1 -812 1695 1524 2269 90 16 10 chrX 10781277 10781587 -151818343 - AluSx SINE Alu 0 312 1 554 319 86 26 chrX 10781587 10781831 -151818099 - HAL1 LINE L1 -983 1524 1241 2217 104 17 0 chrX 10782120 10782417 -151817513 - AluSx SINE Alu -10 302 1 2418 82 0 0 chrX 10782460 10782754 -151817176 + AluSc SINE Alu 1 294 -15 243 306 16 16 chrX 10782783 10782904 -151817026 - L1 LINE L1 -1088 5058 4938 848 126 21 28 chrX 10783238 10783381 -151816549 + FLAM_C SINE Alu 1 142 -1 272 287 122 9 chrX 10784597 10784712 -151815218 + L2 LINE L2 2729 2856 -458 2831 250 55 81 chrX 10784996 10785109 -151814821 - MER69B DNA AcHobo -1300 1226 1112 1997 133 3 0 chrX 10785109 10785426 -151814504 - AluSq SINE Alu 0 318 1 2831 250 55 81 chrX 10785426 10786556 -151813374 - MER69B DNA AcHobo -1414 1112 15 738 242 9 3 chrX 10786555 10786729 -151813201 - MLT1F LTR MaLR -378 164 1 * 2395 82 3 7 chrX 10786905 10787209 -151812721 + AluSp SINE Alu 1 303 -10 447 314 24 39 chrX 10787306 10787537 -151812393 + L1ME3A LINE L1 5940 6161 -1 419 320 16 0 chrX 10787927 10788049 -151811881 + MIR SINE MIR 2 125 -137 976 181 0 125 chrX 10788574 10788617 -151811313 + MER20 DNA MER1_type 1 48 -171 3595 151 50 18 chrX 10788617 10788831 -151811099 - LTR26E LTR ERV1 0 622 416 1624 104 0 0 chrX 10788831 10789042 -151810888 + AluSg/x SINE Alu 84 294 -18 3595 151 50 18 chrX 10789042 10789430 -151810500 - LTR26E LTR ERV1 -206 416 1 976 181 0 125 chrX 10789430 10789508 -151810422 + MER20 DNA MER1_type 48 78 -141 2113 102 6 35 chrX 10789508 10789821 -151810109 + AluSq SINE Alu 1 304 -9 976 181 0 125 chrX 10789821 10789946 -151809984 + MER20 DNA MER1_type 78 217 -2 2840 145 117 26 chrX 10790394 10790939 -151808991 + LTR49 LTR ERV1 1 595 0 2815 145 86 43 chrX 10791144 10791724 -151808206 + L1MB7 LINE L1 5580 6184 0 234 184 0 0 chrX 10791736 10791774 -151808156 - L1MC/D LINE L1 -662 5697 5660 1309 119 5 21 chrX 10791837 10792031 -151807899 + MER4A LTR ERV1 474 664 0 426 342 86 53 chrX 10792205 10792565 -151807365 + L2 LINE L2 2897 3268 -4 2099 130 0 3 chrX 10792658 10792965 -151806965 + AluSx SINE Alu 1 306 -6 532 302 39 28 chrX 10793039 10793102 -151806828 - MER5A DNA MER1_type 0 189 128 5576 45 0 0 chrX 10793102 10793729 -151806201 + L1PA5 LINE L1 5526 6152 -2 532 302 39 28 chrX 10793729 10793844 -151806086 - MER5A DNA MER1_type -61 128 9 998 201 11 0 chrX 10793960 10794144 -151805786 - MER5A DNA MER1_type 0 189 4 290 297 42 8 chrX 10794330 10794448 -151805482 + MIR SINE MIR 20 141 -121 320 317 50 25 chrX 10794574 10794694 -151805236 + L2 LINE L2 3149 3271 -1 474 301 56 20 chrX 10795159 10795355 -151804575 + MIR SINE MIR 60 262 0 208 331 110 55 chrX 10795662 10795789 -151804141 - MIR SINE MIR -70 192 59 1841 163 17 0 chrX 10796107 10796396 -151803534 + AluJo SINE Alu 1 294 -18 2590 194 18 22 chrX 10796436 10796946 -151802984 + LTR31 LTR ERV1 104 611 -8 627 302 86 7 chrX 10797410 10797688 -151802242 + MLT1H LTR MaLR 250 549 0 605 262 101 28 chrX 10797711 10797997 -151801933 + L1MC4 LINE L1 7736 8042 0 21 0 0 0 chrX 10798047 10798068 -151801862 + AT_rich Low_complexity Low_complexity 1 21 0 302 271 161 9 chrX 10798557 10798700 -151801230 + MIR SINE MIR 28 143 -65 215 237 0 34 chrX 10798944 10799003 -151800927 + L2 LINE L2 3257 3313 0 435 232 11 42 chrX 10799123 10799218 -151800712 - MER91B DNA MER1_type -1 189 98 213 289 0 0 chrX 10799246 10799298 -151800632 - MER91B DNA MER1_type -60 130 79 24 0 0 0 chrX 10799641 10799665 -151800265 + AT_rich Low_complexity Low_complexity 1 24 0 349 223 106 0 chrX 10800013 10800107 -151799823 + Charlie7 DNA MER1_type 2 105 -2507 326 134 0 5 chrX 10800386 10800427 -151799503 - MLT2B1 LTR ERVL 0 520 480 186 43 0 0 chrX 10800427 10800450 -151799480 + (TG)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 10800450 10800464 -151799466 - MLT2B1 LTR ERVL -40 480 391 286 181 48 0 chrX 10800464 10800547 -151799383 + (CATA)n Simple_repeat Simple_repeat 1 87 0 1623 155 51 83 chrX 10800553 10800948 -151798982 - MLT2D LTR ERVL -40 480 4 2373 76 0 3 chrX 10801388 10801679 -151798251 - AluSq SINE Alu -23 290 1 2410 90 0 0 chrX 10802189 10802490 -151797440 - AluSg SINE Alu -9 301 1 2632 137 145 100 chrX 10802668 10802931 -151796999 + L1MB2 LINE L1 5387 5637 -534 2268 113 0 0 chrX 10802931 10803232 -151796698 + AluSq SINE Alu 1 301 -12 2632 137 145 100 chrX 10803232 10803617 -151796313 + L1MB2 LINE L1 5637 6064 -107 360 337 23 55 chrX 10803677 10804110 -151795820 + HAL1 LINE L1 1212 1630 -877 761 273 4 24 chrX 10804128 10804355 -151795575 - MIR SINE MIR -16 246 25 218 286 16 16 chrX 10804683 10804746 -151795184 + MIR SINE MIR 29 91 -171 331 247 32 43 chrX 10804746 10804839 -151795091 - LTR16A1 LTR ERVL -178 279 188 607 260 165 44 chrX 10805136 10805524 -151794406 - MLT1L LTR MaLR -179 436 2 243 0 0 0 chrX 10805729 10805756 -151794174 + (T)n Simple_repeat Simple_repeat 1 27 0 729 259 151 49 chrX 10805822 10806331 -151793599 - MLT1F1 LTR MaLR -6 561 1 262 274 48 0 chrX 10807275 10807337 -151792593 - L2 LINE L2 -15 3298 3234 1062 181 68 0 chrX 10807359 10807536 -151792394 - MER5A DNA MER1_type 0 189 1 1590 143 28 16 chrX 10807556 10807807 -151792123 + AluJo SINE Alu 45 298 -14 2296 114 0 7 chrX 10808118 10808425 -151791505 + AluSx SINE Alu 1 305 -7 798 285 48 22 chrX 10808760 10809072 -151790858 + HAL1 LINE L1 1 320 -2187 2022 166 5 87 chrX 10809082 10809498 -151790432 + MLT1B LTR MaLR 9 390 0 1420 189 25 14 chrX 10809543 10809685 -151790245 - MSTD LTR MaLR -107 289 150 2141 103 0 0 chrX 10809685 10809967 -151789963 - AluSx SINE Alu -30 282 1 1420 189 25 14 chrX 10809967 10810110 -151789820 - MSTD LTR MaLR -246 150 1 711 180 39 0 chrX 10810253 10810381 -151789549 - MLT1D LTR MaLR 0 505 373 1831 154 7 20 chrX 10810381 10810686 -151789244 + AluJo SINE Alu 1 301 -11 11800 69 38 0 chrX 10810686 10812620 -151787310 + L1P2 LINE L1 3696 5709 -445 1337 186 9 32 chrX 10812620 10812917 -151787013 - MLT1D LTR MaLR -173 332 1 494 164 118 9 chrX 10812926 10813036 -151786894 + HAL1 LINE L1 743 864 -1643 325 266 169 16 chrX 10813036 10813160 -151786770 + MIR SINE MIR 118 260 -2 1816 220 73 109 chrX 10813177 10813402 -151786528 + HAL1 LINE L1 857 1089 -1418 308 153 17 17 chrX 10813402 10813461 -151786469 - MER116 DNA Mariner -13 67 9 1816 220 73 109 chrX 10813461 10814119 -151785811 + HAL1 LINE L1 1089 1764 -743 188 200 100 67 chrX 10814234 10814294 -151785636 - MER5A DNA MER1_type -7 182 121 1268 187 47 0 chrX 10814472 10814686 -151785244 + MER58A DNA MER1_type 1 224 0 256 207 184 23 chrX 10814762 10814849 -151785081 - MIR3 SINE MIR -5 203 103 362 65 0 0 chrX 10814853 10814899 -151785031 - MADE1 DNA Mariner -34 46 1 566 256 106 19 chrX 10815505 10815746 -151784184 - MLT1J1 LTR MaLR -106 340 68 841 188 0 8 chrX 10815791 10815924 -151784006 - FLAM_A SINE Alu -1 132 1 200 205 0 0 chrX 10817353 10817392 -151782538 + (CAT)n Simple_repeat Simple_repeat 3 41 0 695 232 54 6 chrX 10817452 10817620 -151782310 + MER5B DNA MER1_type 1 176 -2 205 257 29 0 chrX 10817996 10818066 -151781864 + (CAGCG)n Simple_repeat Simple_repeat 5 76 0 1276 183 127 4 chrX 10818256 10818524 -151781406 - AluJb SINE Alu 0 302 2 366 267 56 11 chrX 10818777 10818867 -151781063 - MER91C DNA MER1_type 0 140 47 711 150 142 0 chrX 10819616 10819729 -151780201 + AluSg SINE Alu 2 130 -180 25 31 0 0 chrX 10819729 10819761 -151780169 + AT_rich Low_complexity Low_complexity 1 32 0 2217 111 3 0 chrX 10819894 10820191 -151779739 - AluSq SINE Alu -15 298 1 680 270 64 15 chrX 10820550 10820754 -151779176 + MIR SINE MIR 13 226 -36 1266 70 13 0 chrX 10820860 10821016 -151778914 + L1PA10 LINE L1 6007 6164 -4 1890 162 0 10 chrX 10821543 10821845 -151778085 + AluJb SINE Alu 1 299 -13 471 301 7 0 chrX 10822669 10822812 -151777118 - Charlie8 DNA MER1_type -2192 225 82 2023 121 0 46 chrX 10822814 10823121 -151776809 + AluSx SINE Alu 1 293 -19 1333 203 29 8 chrX 10823301 10823603 -151776327 + L1MD3 LINE L1 7600 7994 -1 1240 160 38 9 chrX 10824203 10824416 -151775514 - MER20 DNA MER1_type 0 219 1 448 187 0 0 chrX 10824503 10824578 -151775352 - MER116 DNA Mariner -3 77 3 28 0 0 0 chrX 10824757 10824785 -151775145 + AT_rich Low_complexity Low_complexity 1 28 0 416 285 162 1 chrX 10825690 10825867 -151774063 + MIR SINE MIR 41 243 -19 276 30 0 0 chrX 10826866 10826899 -151773031 + (TG)n Simple_repeat Simple_repeat 2 34 0 1028 157 52 33 chrX 10827225 10827435 -151772495 + MER58 DNA MER1_type 2 215 -2205 306 296 136 70 chrX 10827519 10827803 -151772127 - L2 LINE L2 -46 3267 3003 2613 59 0 0 chrX 10827803 10828109 -151771821 + AluY SINE Alu 1 306 -5 306 296 136 70 chrX 10828109 10828370 -151771560 - L2 LINE L2 -310 3003 2761 2183 130 0 0 chrX 10828370 10828678 -151771252 + AluSx SINE Alu 1 308 -4 306 296 136 70 chrX 10828678 10828949 -151770981 - L2 LINE L2 -552 2761 2395 812 286 25 0 chrX 10828997 10829200 -151770730 - MER58A DNA MER1_type -16 208 1 398 287 115 13 chrX 10829208 10829365 -151770565 - L2 LINE L2 -1024 2290 2118 438 256 137 21 chrX 10829514 10829674 -151770256 + MIR SINE MIR 2 182 -62 458 249 64 115 chrX 10830274 10830410 -151769520 - L1MC4 LINE L1 -966 7076 6935 660 208 24 8 chrX 10830410 10830535 -151769395 - FLAM_A SINE Alu -6 127 1 458 249 64 115 chrX 10830535 10830711 -151769219 - L1MC4 LINE L1 -1107 6935 6780 329 251 101 84 chrX 10830705 10830884 -151769046 + L1MC5 LINE L1 6999 7180 -781 * 4192 174 29 55 chrX 10831024 10831819 -151768111 - L1MB8 LINE L1 -1 6177 5363 2357 96 0 3 chrX 10831819 10832131 -151767799 - AluSx SINE Alu -1 311 1 4192 174 29 55 chrX 10832131 10832210 -151767720 - L1MB8 LINE L1 -815 5363 5283 3760 136 80 0 chrX 10832210 10832811 -151767119 - L1MC1 LINE L1 0 6333 5685 4192 174 29 55 chrX 10832811 10832936 -151766994 - L1MB8 LINE L1 -895 5283 5156 2418 79 0 10 chrX 10832936 10833240 -151766690 - AluSg SINE Alu -9 301 1 4192 174 29 55 chrX 10833240 10833431 -151766499 - L1MB8 LINE L1 -1022 5156 5007 1485 101 15 0 chrX 10833454 10833747 -151766183 + AluJb SINE Alu 110 405 0 437 176 118 0 chrX 10833747 10833849 -151766081 - L1MB8 LINE L1 -1107 5039 4926 287 275 150 31 chrX 10833819 10833979 -151765951 + L1MC4 LINE L1 7810 7988 -54 * 1445 180 46 4 chrX 10834251 10834563 -151765367 + MER33 DNA MER1_type 1 313 -11 276 330 52 0 chrX 10834636 10834733 -151765197 + MIR SINE MIR 19 120 -88 204 296 28 14 chrX 10834752 10834823 -151765107 - L2 LINE L2 -4 3309 3238 258 158 0 0 chrX 10835168 10835206 -151764724 + MLT1I LTR MaLR 98 135 -274 421 193 45 23 chrX 10835250 10835338 -151764592 + MLT1G1 LTR MaLR 224 313 -282 1320 158 29 0 chrX 10835363 10835572 -151764358 + MER20 DNA MER1_type 2 216 -3 1503 231 43 5 chrX 10837066 10837438 -151762492 - MER58D DNA MER1_type 0 386 1 297 250 9 37 chrX 10837693 10837801 -151762129 + C-rich Low_complexity Low_complexity 4 108 0 246 256 0 23 chrX 10837809 10837895 -151762035 + (CCG)n Simple_repeat Simple_repeat 2 85 0 23 0 0 0 chrX 10838041 10838064 -151761866 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 10838172 10838201 -151761729 + GC_rich Low_complexity Low_complexity 1 29 0 202 312 130 7 chrX 10838530 10838684 -151761246 - MER5B DNA MER1_type -5 173 1 862 181 82 16 chrX 10839085 10839267 -151760663 + L1M4 LINE L1 4901 5094 -1052 1465 268 92 15 chrX 10840478 10840956 -151758974 - MLT1G1 LTR MaLR -7 588 74 477 165 13 0 chrX 10841277 10841356 -151758574 - MER58 DNA MER1_type 0 2420 2341 1405 174 156 44 chrX 10841361 10841751 -151758179 - MLT1D LTR MaLR -70 435 2 237 195 0 0 chrX 10841752 10841793 -151758137 - MER58 DNA MER1_type -137 78 38 2353 171 10 10 chrX 10841843 10842234 -151757696 - MSTD LTR MaLR -5 391 1 896 147 0 29 chrX 10842463 10842599 -151757331 - FLAM_A SINE Alu -1 132 1 2413 73 16 3 chrX 10842633 10842936 -151756994 - AluSp SINE Alu -6 307 1 1093 157 9 65 chrX 10843223 10843439 -151756491 - MER46A DNA MER2_type -1 235 32 2123 124 3 3 chrX 10843495 10843794 -151756136 + AluSx SINE Alu 1 299 -13 1523 259 156 31 chrX 10844249 10845032 -151754898 + HAL1 LINE L1 1627 2507 0 2893 160 66 19 chrX 10845047 10845578 -151754352 + MER68 LTR ERV1 3 558 -4 1224 172 21 21 chrX 10846082 10846320 -151753610 + L1MD2 LINE L1 6122 6359 0 1530 206 108 30 chrX 10846505 10846938 -151752992 - MLT1C LTR MaLR 0 467 1 1534 156 31 49 chrX 10847323 10847611 -151752319 - MER58 DNA MER1_type -58 283 1 393 22 0 0 chrX 10847641 10847687 -151752243 + (TG)n Simple_repeat Simple_repeat 2 47 0 281 269 201 52 chrX 10847700 10847949 -151751981 - L3 LINE CR1 -640 937 652 2338 86 0 7 chrX 10848015 10848328 -151751602 - AluSx SINE Alu 0 312 1 2045 101 22 4 chrX 10848745 10849058 -151750872 - AluSq SINE Alu 0 318 1 1527 220 121 20 chrX 10849431 10849707 -151750223 - MLT1D LTR MaLR 0 505 258 1897 137 3 36 chrX 10849707 10850014 -151749916 - AluJo SINE Alu -14 298 2 1527 220 121 20 chrX 10850014 10850192 -151749738 - MLT1D LTR MaLR -247 258 5 465 267 33 0 chrX 10850269 10850389 -151749541 + MER94 DNA DNA 10 133 -1 2283 113 0 0 chrX 10850568 10850861 -151749069 - AluSx SINE Alu -19 293 1 241 260 68 14 chrX 10851532 10851605 -151748325 + L1ME LINE L1 5748 5824 -297 331 314 28 28 chrX 10851640 10851807 -151748123 + MIR SINE MIR 13 180 -28 1774 220 15 3 chrX 10851817 10852154 -151747776 - MER58B DNA MER1_type 0 341 1 2378 81 0 16 chrX 10852210 10852518 -151747412 + AluSx SINE Alu 1 303 -9 840 168 183 208 chrX 10853156 10853227 -151746703 - MLT1A1 LTR MaLR -2 394 323 1987 69 126 0 chrX 10853227 10853489 -151746441 + AluSp SINE Alu 2 296 -17 840 168 183 208 chrX 10853489 10853821 -151746109 - MLT1A1 LTR MaLR -73 323 1 277 261 19 64 chrX 10854151 10854285 -151745645 - L1ME4a LINE L1 -46 6075 5947 2413 77 0 0 chrX 10854285 10854582 -151745348 - AluY SINE Alu -10 301 5 277 261 19 64 chrX 10854582 10854604 -151745326 - L1ME4a LINE L1 -174 5947 5926 243 0 0 0 chrX 10854708 10854735 -151745195 + (TG)n Simple_repeat Simple_repeat 2 28 0 237 333 10 10 chrX 10854886 10854988 -151744942 - MIR SINE MIR -93 169 68 237 33 0 0 chrX 10856380 10856410 -151743520 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1066 177 0 0 chrX 10857123 10857287 -151742643 + FRAM SINE Alu 1 164 -2 1360 164 26 74 chrX 10858719 10858764 -151741166 - L1MB7 LINE L1 -3 6181 6135 2287 117 0 0 chrX 10858764 10859073 -151740857 + AluSx SINE Alu 1 309 -3 1360 164 26 74 chrX 10859073 10859339 -151740591 - L1MB7 LINE L1 -49 6135 5885 653 263 82 47 chrX 10859683 10860048 -151739882 - L1MB7 LINE L1 -1993 5815 5438 225 175 208 58 chrX 10861199 10861319 -151738611 - L1ME4a LINE L1 -1 6120 5983 2242 106 3 0 chrX 10862059 10862362 -151737568 - AluSx SINE Alu -8 304 1 25 0 0 0 chrX 10862410 10862435 -151737495 + AT_rich Low_complexity Low_complexity 1 25 0 270 247 43 0 chrX 10862632 10862725 -151737205 - L1MEc LINE L1 -4092 2304 2208 2157 128 0 3 chrX 10862726 10863022 -151736908 - AluJb SINE Alu -17 295 1 482 293 78 28 chrX 10863171 10863458 -151736472 - L1MEc LINE L1 -861 1715 1500 192 77 0 0 chrX 10863888 10863914 -151736016 + (A)n Simple_repeat Simple_repeat 1 26 0 2890 195 26 18 chrX 10863928 10864498 -151735432 + L1MB5 LINE L1 5598 6172 -2 2319 104 10 0 chrX 10864506 10864814 -151735116 + AluSp SINE Alu 1 311 -2 625 184 40 24 chrX 10865286 10865411 -151734519 - FLAM_A SINE Alu -6 127 1 835 223 19 43 chrX 10866466 10866677 -151733253 + MER33 DNA MER1_type 5 210 -114 1047 170 95 10 chrX 10866678 10866878 -151733052 + MER20 DNA MER1_type 3 219 0 2947 177 18 14 chrX 10867480 10868045 -151731885 + L1MB4 LINE L1 5595 6161 -19 302 114 0 0 chrX 10868047 10868091 -151731839 - U2 snRNA snRNA -126 62 19 246 81 0 0 chrX 10868091 10868128 -151731802 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 292 262 63 74 chrX 10868229 10868401 -151731529 + MIR3 SINE MIR 1 167 -61 1088 231 47 0 chrX 10868517 10868729 -151731201 + MER58A DNA MER1_type 3 224 0 383 268 142 0 chrX 10871829 10871956 -151727974 + MIR SINE MIR 8 152 -110 198 0 0 0 chrX 10872205 10872227 -151727703 + (A)n Simple_repeat Simple_repeat 1 22 0 2601 40 0 0 chrX 10872785 10873088 -151726842 + AluY SINE Alu 1 303 -8 1890 109 12 4 chrX 10873417 10873673 -151726257 + AluSx SINE Alu 28 285 -27 806 199 0 0 chrX 10873697 10873828 -151726102 + FLAM_A SINE Alu 1 131 -2 372 337 47 18 chrX 10874113 10874282 -151725648 + MIR3 SINE MIR 16 189 -19 745 170 0 0 chrX 10874349 10874461 -151725469 - MER81 DNA DNA 0 114 3 386 119 0 15 chrX 10875139 10875206 -151724724 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 795 177 8 15 chrX 10875216 10875346 -151724584 - FLAM_A SINE Alu -3 130 2 1713 190 103 60 chrX 10875529 10875993 -151723937 + MER31A LTR ERV1 2 485 0 306 50 0 0 chrX 10876306 10876346 -151723584 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 2348 77 3 0 chrX 10876499 10876786 -151723144 - AluSp SINE Alu -23 290 3 709 125 16 16 chrX 10877559 10877687 -151722243 - MER20 DNA MER1_type -87 132 5 283 163 0 20 chrX 10877906 10878007 -151721923 - AluJo SINE Alu 0 340 241 907 189 0 13 chrX 10878008 10878167 -151721763 - AluJo SINE Alu -155 157 1 2002 141 3 25 chrX 10878339 10878482 -151721448 + AluJb SINE Alu 1 146 -166 2433 70 3 0 chrX 10878482 10878784 -151721146 + AluY SINE Alu 1 303 -8 2002 141 3 25 chrX 10878784 10878959 -151720971 + AluJb SINE Alu 146 312 0 1978 137 10 10 chrX 10879034 10879333 -151720597 - AluSq SINE Alu -14 299 1 32665 107 10 59 chrX 10879466 10883279 -151716651 - L1PA7 LINE L1 -15 6139 2784 2241 119 3 0 chrX 10883279 10883591 -151716339 - AluSp SINE Alu 0 313 1 32665 107 10 59 chrX 10883591 10886234 -151713696 - L1PA7 LINE L1 -3370 2784 13 486 305 13 26 chrX 10886323 10886477 -151713453 - MIR3 SINE MIR -3 205 54 2174 123 0 10 chrX 10886490 10886818 -151713112 + AluSx SINE Alu 1 312 0 319 85 21 0 chrX 10887143 10887190 -151712740 + MER5A DNA MER1_type 1 48 -141 2063 156 0 0 chrX 10887772 10888079 -151711851 + AluJo SINE Alu 1 307 -5 207 0 0 0 chrX 10888203 10888226 -151711704 + (T)n Simple_repeat Simple_repeat 1 23 0 554 276 49 6 chrX 10888302 10888465 -151711465 + MER5B DNA MER1_type 3 172 -6 281 266 175 22 chrX 10888684 10888863 -151711067 - L1MC/D LINE L1 -544 5577 5412 21 0 0 0 chrX 10888926 10888947 -151710983 + AT_rich Low_complexity Low_complexity 1 21 0 290 293 47 28 chrX 10889362 10889468 -151710462 + MLT1H LTR MaLR 20 127 -415 524 228 188 22 chrX 10889509 10889801 -151710129 + MLT1H LTR MaLR 229 553 -2 2453 90 0 0 chrX 10891875 10892186 -151707744 - AluSq SINE Alu -2 311 1 267 217 72 43 chrX 10892232 10892301 -151707629 - MIR3 SINE MIR -133 75 5 710 216 0 0 chrX 10892393 10892518 -151707412 + FLAM_C SINE Alu 2 126 -7 587 108 63 36 chrX 10892552 10892663 -151707267 - MER53 DNA DNA 0 189 76 536 308 92 15 chrX 10892950 10893278 -151706652 + L1MC4a LINE L1 5685 6037 -1771 335 108 31 0 chrX 10893323 10893388 -151706542 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3300 160 12 35 chrX 10893401 10893425 -151706505 + MER68 LTR ERV1 1 24 -538 2170 102 10 3 chrX 10893425 10893718 -151706212 + AluSq SINE Alu 1 295 -18 3300 160 12 35 chrX 10893718 10894268 -151705662 + MER68 LTR ERV1 24 562 0 192 40 0 0 chrX 10894276 10894301 -151705629 + (TC)n Simple_repeat Simple_repeat 2 26 0 401 214 0 31 chrX 10894439 10894598 -151705332 + CT-rich Low_complexity Low_complexity 3 156 0 31048 114 16 54 chrX 10895219 10901623 -151698307 - L1PA8 LINE L1 -6 6166 12 451 296 50 5 chrX 10901667 10901887 -151698043 + L1MC4 LINE L1 7813 8042 0 1878 155 4 0 chrX 10902341 10902618 -151697312 + AluSx SINE Alu 1 278 -34 207 0 0 0 chrX 10902622 10902645 -151697285 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 225 0 0 0 chrX 10902937 10902962 -151696968 + (TA)n Simple_repeat Simple_repeat 2 26 0 727 52 0 4 chrX 10902962 10903061 -151696869 - L1PA5 LINE L1 -13 6142 6044 1361 108 128 5 chrX 10903272 10903476 -151696454 + MER30 DNA MER1_type 1 229 -1 2867 10 0 0 chrX 10903765 10904076 -151695854 + AluYa5 SINE Alu 1 311 0 43809 50 2 1 chrX 10904726 10910861 -151689069 - L1PA5 LINE L1 -9 6145 3 2200 116 0 3 chrX 10910952 10911255 -151688675 + AluSg SINE Alu 1 302 -8 434 188 20 30 chrX 10911504 10911605 -151688325 - MER20B DNA MER1_type -2 781 682 404 289 19 13 chrX 10911658 10911814 -151688116 - L1M4 LINE L1 -1500 4646 4490 798 241 105 8 chrX 10911824 10912255 -151687675 - LTR33 LTR ERVL -9 512 14 491 306 33 0 chrX 10912502 10912685 -151687245 + MIR SINE MIR 74 262 0 1183 178 84 0 chrX 10913063 10913265 -151686665 + MER20 DNA MER1_type 1 219 0 24 32 0 0 chrX 10913647 10913678 -151686252 + AT_rich Low_complexity Low_complexity 1 31 0 241 333 0 70 chrX 10914430 10914445 -151685485 + MIR SINE MIR 47 61 -201 2047 153 80 49 chrX 10914445 10914897 -151685033 - MER31B LTR ERV1 0 466 1 241 333 0 70 chrX 10914897 10915037 -151684893 + MIR SINE MIR 61 191 -71 577 245 39 101 chrX 10915717 10915775 -151684155 + L1ME4a LINE L1 5610 5670 -451 3194 67 15 0 chrX 10915775 10916177 -151683753 + L1PA10 LINE L1 5760 6167 -1 577 245 39 101 chrX 10916177 10916424 -151683506 + L1ME4a LINE L1 5670 5896 -225 274 308 29 0 chrX 10916561 10916665 -151683265 - MIR SINE MIR -107 155 49 1076 203 98 67 chrX 10917015 10917331 -151682599 + MER58B DNA MER1_type 3 328 -13 714 218 184 49 chrX 10918599 10918947 -151680983 - MLT1G LTR MaLR 0 590 196 246 156 0 0 chrX 10918950 10918995 -151680935 + GA-rich Low_complexity Low_complexity 1 45 0 233 221 128 12 chrX 10919040 10919126 -151680804 + L2 LINE L2 1737 1832 -1482 1347 307 48 13 chrX 10919140 10919913 -151680017 + L2 LINE L2 2507 3305 -8 315 313 59 84 chrX 10920084 10920407 -151679523 - L1ME4a LINE L1 -89 6032 5718 2111 109 0 0 chrX 10920457 10920762 -151679168 + AluSx SINE Alu 1 305 0 223 326 11 21 chrX 10920975 10921070 -151678860 - MIR3 SINE MIR -1 207 114 387 237 52 21 chrX 10921731 10921828 -151678102 + L2 LINE L2 3170 3269 -3 3057 82 0 3 chrX 10921916 10922281 -151677649 + THE1B LTR MaLR 1 364 0 2185 120 3 0 chrX 10922376 10922677 -151677253 - AluSx SINE Alu -10 302 1 255 212 136 68 chrX 10922908 10923040 -151676890 + MIR SINE MIR 108 248 -14 343 202 0 140 chrX 10923695 10923809 -151676121 + MER58 DNA MER1_type 1 98 -2322 207 272 109 11 chrX 10924357 10924449 -151675481 - L2 LINE L2 -5 3308 3208 509 176 133 66 chrX 10924698 10924908 -151675022 + MER58 DNA MER1_type 1 2415 -5 833 196 101 6 chrX 10924922 10925090 -151674840 + MER3 DNA MER1_type 1 184 -25 1033 267 44 85 chrX 10925783 10926311 -151673619 - MLT1J LTR MaLR 0 511 6 242 258 101 22 chrX 10926503 10926592 -151673338 + L2 LINE L2 3137 3232 -40 368 256 136 42 chrX 10927097 10927288 -151672642 - L2 LINE L2 0 3313 3105 376 61 0 0 chrX 10927308 10927357 -151672573 + MIR SINE MIR 107 155 -107 2188 113 0 0 chrX 10927364 10927682 -151672248 + AluSq SINE Alu 1 318 0 235 193 101 118 chrX 10927683 10927802 -151672128 + MER46C DNA MER2_type 19 135 -203 49 107 0 0 chrX 10927802 10927998 -151671932 + AT_rich Low_complexity Low_complexity 1 196 0 1031 195 44 22 chrX 10927998 10928224 -151671706 + MER46C DNA MER2_type 108 338 0 401 247 22 0 chrX 10928233 10928322 -151671608 + MIR SINE MIR 172 262 0 710 320 76 12 chrX 10928356 10928845 -151671085 - L2 LINE L2 -245 3068 2544 529 134 116 71 chrX 10928993 10929105 -151670825 - MER63 DNA MER1_type -319 743 1 488 173 0 0 chrX 10929955 10930030 -151669900 + AluJ/FLAM SINE Alu 2 76 -236 1790 151 10 10 chrX 10930399 10930697 -151669233 - AluJo SINE Alu -12 300 3 449 254 59 0 chrX 10931053 10931171 -151668759 - MER94 DNA DNA -8 126 2 316 244 52 0 chrX 10931382 10931467 -151668463 + MIR SINE MIR 68 157 -51 2388 84 7 0 chrX 10935537 10935845 -151664085 + AluSg SINE Alu 1 310 0 1643 105 5 0 chrX 10938220 10938439 -151661491 + AluSg/x SINE Alu 83 302 -10 247 208 62 115 chrX 10940057 10940187 -151659743 - MIR SINE MIR -49 213 91 236 220 0 34 chrX 10941455 10941514 -151658416 - L1MC4 LINE L1 -1339 6703 6647 28 86 0 0 chrX 10941640 10941710 -151658220 + AT_rich Low_complexity Low_complexity 1 70 0 2373 96 3 0 chrX 10941739 10942040 -151657890 - AluSx SINE Alu -10 302 1 492 86 0 0 chrX 10942939 10943009 -151656921 + (TA)n Simple_repeat Simple_repeat 2 71 0 238 309 11 21 chrX 10943011 10943105 -151656825 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 * 240 304 14 0 chrX 10943037 10943106 -151656824 + (TG)n Simple_repeat Simple_repeat 1 70 0 205 188 0 0 chrX 10943801 10943833 -151656097 - L2 LINE L2 -81 3232 3201 2036 116 41 7 chrX 10943855 10944149 -151655781 + AluSx SINE Alu 1 304 -8 459 52 0 0 chrX 10944277 10944335 -151655595 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 391 301 9 9 chrX 10944336 10944449 -151655481 - L2 LINE L2 -2 3270 3158 321 322 33 39 chrX 10944617 10944797 -151655133 - L2 LINE L2 -901 2413 2235 539 210 0 0 chrX 10944848 10944948 -151654982 + MER5A DNA MER1_type 9 108 -81 1261 183 117 18 chrX 10945070 10945343 -151654587 - AluJo SINE Alu -12 300 1 862 201 29 6 chrX 10945381 10945555 -151654375 - MER5B DNA MER1_type 0 178 1 822 179 19 26 chrX 10945582 10945738 -151654192 - MER5A DNA MER1_type -4 185 31 220 383 109 34 chrX 10945744 10945919 -151654011 - MER5A DNA MER1_type -1 188 1 605 124 21 10 chrX 10946461 10946558 -151653372 + MER4A LTR ERV1 1 98 -566 1908 120 174 23 chrX 10946558 10946909 -151653021 + MER4A LTR ERV1 261 664 0 2417 38 42 0 chrX 10947393 10947682 -151652248 + AluY SINE Alu 2 302 -9 1803 122 20 0 chrX 10947724 10948010 -151651920 + AluJo SINE Alu 26 316 0 499 299 91 32 chrX 10948896 10949301 -151650629 + L1ME4a LINE L1 5690 6118 -3 236 54 54 0 chrX 10949371 10949408 -151650522 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 306 248 167 0 chrX 10949516 10949638 -151650292 + MIR SINE MIR 16 154 -62 575 203 12 49 chrX 10950424 10950587 -151649343 - MIR SINE MIR 0 262 106 297 0 0 0 chrX 10951010 10951083 -151648847 + (CA)n Simple_repeat Simple_repeat 1 106 0 297 0 0 0 chrX 10951083 10951116 -151648814 + (CA)n Simple_repeat Simple_repeat 2 34 0 1937 140 4 4 chrX 10951294 10951604 -151648326 - AluJb SINE Alu 0 313 4 1671 185 102 6 chrX 10952014 10952366 -151647564 - MER58D DNA MER1_type 0 386 1 237 297 144 17 chrX 10952481 10952599 -151647331 - L2 LINE L2 0 3272 3140 2267 64 0 0 chrX 10953979 10954246 -151645684 - AluSx SINE Alu -45 267 1 1993 133 0 3 chrX 10954477 10954787 -151645143 + AluSx SINE Alu 1 309 0 649 273 23 11 chrX 10954899 10955075 -151644855 + MER5B DNA MER1_type 1 178 0 1541 99 85 0 chrX 10955611 10955823 -151644107 - MER30 DNA MER1_type 0 230 1 366 261 43 26 chrX 10956154 10956269 -151643661 + MIR3 SINE MIR 40 156 -52 195 42 0 0 chrX 10956279 10956303 -151643627 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 186 212 0 0 chrX 10956629 10956662 -151643268 + L2 LINE L2 1102 1134 -2180 1944 190 53 31 chrX 10957613 10958065 -151641865 - MLT1C LTR MaLR -3 464 3 345 244 85 104 chrX 10958268 10958432 -151641498 - HAL1 LINE L1 -2286 221 61 264 100 0 0 chrX 10958473 10958513 -151641417 + (TC)n Simple_repeat Simple_repeat 2 41 0 1072 194 5 0 chrX 10959565 10959761 -151640169 + L1MC3 LINE L1 7225 7421 -364 337 265 282 6 chrX 10959761 10959931 -151639999 + L2 LINE L2 3095 3311 -2 1014 281 65 31 chrX 10959931 10960425 -151639505 - L1M3 LINE L1 -330 5838 5293 359 331 108 14 chrX 10960464 10960751 -151639179 + L1 LINE L1 4782 5095 -1051 940 271 93 31 chrX 10960757 10961177 -151638753 + L2 LINE L2 2172 2617 -697 1897 118 3 17 chrX 10961272 10961561 -151638369 + L1MA8 LINE L1 6000 6284 -7 1701 152 17 17 chrX 10961588 10961885 -151638045 - AluJb SINE Alu -15 297 1 240 273 15 0 chrX 10961943 10962009 -151637921 - L2 LINE L2 -1363 1951 1885 290 324 0 97 chrX 10962193 10962300 -151637630 + L2 LINE L2 2930 3013 -259 2022 89 4 0 chrX 10962300 10962557 -151637373 - AluSp SINE Alu -12 301 44 290 324 0 97 chrX 10962557 10962634 -151637296 + L2 LINE L2 3013 3096 -176 1664 236 73 52 chrX 10963048 10963526 -151636404 - MLT1E2 LTR MaLR 0 626 139 260 204 0 0 chrX 10963572 10963616 -151636314 - MLT1E2 LTR MaLR -580 44 1 537 290 78 42 chrX 10964329 10964546 -151635384 + MIR SINE MIR 4 228 -34 2025 140 0 3 chrX 10964954 10965254 -151634676 - AluJo SINE Alu -13 299 1 962 197 136 25 chrX 10968641 10969071 -151630859 - MLT1E LTR MaLR 0 593 81 313 179 0 18 chrX 10969196 10969252 -151630678 - MLT1E LTR MaLR -487 55 1 191 185 0 93 chrX 10970573 10970627 -151629303 - L2 LINE L2 -5 3267 3219 2808 150 28 78 chrX 10970899 10971399 -151628531 + LTR36 LTR ERV1 41 508 -103 5842 79 19 1 chrX 10971399 10972168 -151627762 + L1MA1 LINE L1 5520 6302 0 2808 150 28 78 chrX 10972168 10972266 -151627664 + LTR36 LTR ERV1 508 609 -2 1293 156 4 130 chrX 10972494 10972634 -151627296 + L1MB7 LINE L1 5733 5889 -295 17392 27 0 3 chrX 10972634 10975333 -151624597 + L1PA3 LINE L1 3457 6152 -3 1293 156 4 130 chrX 10975333 10975637 -151624293 + L1MB7 LINE L1 5889 6104 -80 302 235 141 0 chrX 10975884 10975969 -151623961 + MIR3 SINE MIR 82 178 -30 2037 211 45 5 chrX 10975995 10976417 -151623513 - MLT1C LTR MaLR -27 440 2 246 273 189 34 chrX 10977163 10977401 -151622529 + L2 LINE L2 2431 2705 -609 368 338 65 78 chrX 10977449 10977910 -151622020 + L2 LINE L2 2818 3272 0 2170 102 10 3 chrX 10978611 10978904 -151621026 + AluSq SINE Alu 1 295 -18 3126 167 13 9 chrX 10978910 10979454 -151620476 + MER68 LTR ERV1 17 562 0 192 40 0 0 chrX 10979462 10979487 -151620443 + (TC)n Simple_repeat Simple_repeat 2 26 0 382 216 0 36 chrX 10979624 10979791 -151620139 + CT-rich Low_complexity Low_complexity 4 164 0 18940 49 6 1 chrX 10980405 10983455 -151616475 - L1PA8 LINE L1 -8 6164 3105 2795 29 0 0 chrX 10984065 10984407 -151615523 - AluYa5 SINE Alu 0 342 1 296 282 70 106 chrX 10984418 10984691 -151615239 + L2 LINE L2 3005 3267 -46 1028 157 52 33 chrX 10984775 10984985 -151614945 - MER58 DNA MER1_type -126 215 2 276 30 0 0 chrX 10985311 10985344 -151614586 + (CA)n Simple_repeat Simple_repeat 2 34 0 3851 214 24 1 chrX 10986330 10987182 -151612748 - L1 LINE L1 -1282 4864 3994 1648 132 0 31 chrX 10987196 10987350 -151612580 - AluSx SINE Alu -24 288 144 444 37 0 0 chrX 10987350 10987404 -151612526 + (TG)n Simple_repeat Simple_repeat 2 55 0 1648 132 0 31 chrX 10987404 10987507 -151612423 - AluSx SINE Alu -168 144 39 955 209 4 53 chrX 10987607 10987851 -151612079 + L1MB3 LINE L1 5950 6181 -2 1090 288 104 32 chrX 10987907 10988656 -151611274 + L1M4 LINE L1 4471 5273 -873 201 256 0 0 chrX 10988891 10988930 -151611000 - L2 LINE L2 -20 3252 3214 1914 168 6 3 chrX 10989156 10989472 -151610458 + MER2 DNA MER2_type 28 344 -1 1756 172 84 3 chrX 10989871 10990254 -151609676 - Charlie1b DNA MER1_type -1 522 109 285 299 46 69 chrX 10990419 10990593 -151609337 + MER5A DNA MER1_type 2 171 -18 544 103 0 0 chrX 10990730 10990798 -151609132 - AluS SINE Alu -244 69 2 5517 126 57 32 chrX 10990802 10991818 -151608112 + MER4B-int LTR ERV1 3419 4459 -2139 1619 115 4 4 chrX 10991826 10992052 -151607878 - AluSg/x SINE Alu -14 296 71 2258 99 13 19 chrX 10992060 10992372 -151607558 + MER4A LTR ERV1 355 664 0 3931 144 49 68 chrX 10992858 10993031 -151606899 + MER4B-int LTR ERV1 1433 1608 -4990 2175 120 14 0 chrX 10993031 10993322 -151606608 - AluSx SINE Alu -17 295 1 3931 144 49 68 chrX 10993322 10994403 -151605527 + MER4B-int LTR ERV1 1608 2485 -4113 1017 68 83 0 chrX 10994408 10994540 -151605390 - AluSp/q SINE Alu -10 303 161 213 282 14 0 chrX 10995147 10995218 -151604712 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 234 0 0 0 chrX 10995381 10995407 -151604523 + (CA)n Simple_repeat Simple_repeat 2 27 0 3720 123 0 29 chrX 10995418 10995670 -151604260 + L1P LINE L1 3497 3755 -2391 1750 155 54 0 chrX 10995670 10995947 -151603983 + AluSx SINE Alu 1 292 -20 3720 123 0 29 chrX 10995947 10996288 -151603642 + L1P LINE L1 3755 4073 -2073 475 162 338 7 chrX 10996539 10996681 -151603249 - MER5A DNA MER1_type 0 189 1 359 256 144 0 chrX 10996867 10996992 -151602938 + MIR SINE MIR 108 250 -12 220 0 27 54 chrX 10997249 10997286 -151602644 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1920 164 0 10 chrX 10997305 10997617 -151602313 - AluJb SINE Alu -3 309 1 2417 224 36 18 chrX 10998073 10998675 -151601255 + L1MC4 LINE L1 7316 7928 -114 589 220 0 50 chrX 10998682 10998841 -151601089 + L1MC4 LINE L1 7892 8042 0 1486 224 97 84 chrX 10999256 11000116 -151599814 + L2 LINE L2 2284 3165 -148 4921 51 1 40 chrX 11000164 11000834 -151599096 + SVA Other Other 1 644 -742 229 83 0 125 chrX 11000934 11000982 -151598948 - Alu SINE Alu -68 65 24 628 64 0 0 chrX 11000997 11001075 -151598855 + LTR49 LTR ERV1 517 594 -1 362 246 133 74 chrX 11001075 11001278 -151598652 + MIR SINE MIR 47 261 -1 2130 141 0 3 chrX 11001609 11001915 -151598015 + AluJo SINE Alu 1 305 -7 2046 130 27 0 chrX 11002126 11002425 -151597505 + AluSx SINE Alu 1 307 -5 413 200 117 8 chrX 11002541 11002661 -151597269 + L1ME2 LINE L1 6023 6155 -9 237 234 16 16 chrX 11003108 11003172 -151596758 + CT-rich Low_complexity Low_complexity 1 64 0 288 0 0 0 chrX 11003251 11003283 -151596647 + (TG)n Simple_repeat Simple_repeat 2 33 0 2324 106 3 0 chrX 11003314 11003625 -151596305 + AluSx SINE Alu 1 312 0 828 140 78 39 chrX 11003688 11003867 -151596063 - MER53 DNA DNA -3 186 1 23 0 0 0 chrX 11005243 11005266 -151594664 + AT_rich Low_complexity Low_complexity 1 23 0 1600 90 202 101 chrX 11005515 11005882 -151594048 - MER4A LTR ERV1 -260 404 1 667 176 21 75 chrX 11006595 11006782 -151593148 - MER5B DNA MER1_type -1 177 1 748 150 105 46 chrX 11007616 11007769 -151592161 + MER63A DNA MER1_type 7 168 -42 271 280 25 63 chrX 11007884 11008036 -151591894 - MIR SINE MIR -50 212 66 1854 190 69 52 chrX 11008036 11008531 -151591399 + MLT1D LTR MaLR 3 505 0 271 280 25 63 chrX 11008531 11008561 -151591369 - MIR SINE MIR -196 66 36 209 206 14 82 chrX 11008550 11008623 -151591307 + L2 LINE L2 2997 3064 -208 * 227 241 145 0 chrX 11009400 11009483 -151590447 + MIR SINE MIR 61 155 -107 186 250 17 0 chrX 11009475 11009535 -151590395 - MIR SINE MIR 0 262 202 * 675 204 148 0 chrX 11009579 11009721 -151590209 - MER45A DNA AcHobo 0 178 16 2799 116 131 4 chrX 11010721 11011201 -151588729 + LTR49 LTR ERV1 2 736 -51 1321 71 0 0 chrX 11011212 11011367 -151588563 - AluSg/x SINE Alu -22 288 134 6134 31 1 1 chrX 11011471 11012148 -151587782 + SVA Other Other 709 1385 -1 426 256 66 44 chrX 11012168 11012305 -151587625 + L2 LINE L2 3173 3312 -1 2423 59 7 10 chrX 11012391 11012695 -151587235 - AluSq SINE Alu -10 303 1 985 251 102 91 chrX 11012957 11013508 -151586422 - MER21B LTR ERV1 -167 696 140 371 252 0 55 chrX 11013541 11013668 -151586262 - MER77 LTR ERV1 -420 185 66 207 0 0 0 chrX 11013887 11013910 -151586020 + (A)n Simple_repeat Simple_repeat 1 23 0 203 138 0 0 chrX 11014017 11014046 -151585884 + (CCA)n Simple_repeat Simple_repeat 1 29 0 281 292 31 45 chrX 11014282 11014436 -151585494 + MIR SINE MIR 42 191 -66 2405 45 0 14 chrX 11014773 11015088 -151584842 + AluY SINE Alu 1 311 0 1328 190 135 5 chrX 11015162 11015541 -151584389 + Charlie4a DNA MER1_type 25 452 -56 1710 137 68 34 chrX 11015554 11015876 -151584054 + MER1B DNA MER1_type 5 337 0 681 221 127 0 chrX 11016841 11016999 -151582931 - MER45A DNA AcHobo 0 178 1 2285 91 3 3 chrX 11017380 11017676 -151582254 + AluSc SINE Alu 14 309 0 976 113 0 0 chrX 11017885 11018018 -151581912 + FLAM_C SINE Alu 1 133 0 616 253 109 13 chrX 11018141 11018370 -151581560 + MIR SINE MIR 12 262 0 243 342 0 54 chrX 11018551 11018662 -151581268 + L3 LINE CR1 1460 1564 -13 336 221 39 0 chrX 11018899 11018976 -151580954 + MIR SINE MIR 93 172 -90 938 87 16 0 chrX 11019987 11020113 -151579817 + AluSg/x SINE Alu 174 301 -8 191 129 0 0 chrX 11020306 11020337 -151579593 + MIR SINE MIR 110 140 -68 42 48 0 0 chrX 11020491 11020554 -151579376 + AT_rich Low_complexity Low_complexity 1 63 0 471 242 152 0 chrX 11020662 11020827 -151579103 - MIR SINE MIR 0 262 73 1760 144 43 20 chrX 11027752 11028051 -151571879 - AluJb SINE Alu -6 306 1 2166 98 6 38 chrX 11028192 11028509 -151571421 - AluSx SINE Alu -5 307 1 1190 123 0 35 chrX 11029417 11029588 -151570342 - AluJb SINE Alu -16 296 132 265 274 24 0 chrX 11029598 11029682 -151570248 - L2 LINE L2 0 3272 3187 1444 220 137 39 chrX 11030290 11030750 -151569180 - MLT1D LTR MaLR 0 505 1 328 212 66 133 chrX 11032024 11032265 -151567665 - MER112 DNA MER1_type -8 252 28 286 309 22 14 chrX 11032552 11032691 -151567239 + MIR SINE MIR 75 214 -48 429 20 0 0 chrX 11032783 11032833 -151567097 + (TG)n Simple_repeat Simple_repeat 1 50 0 994 149 0 19 chrX 11032833 11032987 -151566943 - FRAM SINE Alu -33 143 1 3344 48 65 5 chrX 11032999 11033416 -151566514 + MLT2A1 LTR ERVL 1 442 -2 3036 214 84 23 chrX 11033825 11034642 -151565288 - L1MC4 LINE L1 -14 8028 7162 2305 118 0 0 chrX 11034654 11034958 -151564972 - AluSx SINE Alu -8 304 1 2245 111 3 0 chrX 11035622 11035919 -151564011 + AluSp SINE Alu 1 298 -15 1406 140 44 0 chrX 11036775 11037025 -151562905 - MER63 DNA MER1_type -33 1029 769 2821 104 33 19 chrX 11037051 11037405 -151562525 + MSTC LTR MaLR 1 363 -65 1392 167 61 64 chrX 11037405 11037716 -151562214 + AluJo SINE Alu 3 312 0 2821 104 33 19 chrX 11037716 11037783 -151562147 + MSTC LTR MaLR 363 428 0 1173 183 48 44 chrX 11038048 11038321 -151561609 + L1MD3 LINE L1 7310 7583 -412 3326 155 102 5 chrX 11038321 11038962 -151560968 - MER39 LTR ERV1 -9 644 1 1219 175 29 107 chrX 11038963 11039245 -151560685 + L1MD3 LINE L1 7577 7823 -172 2117 140 0 3 chrX 11039245 11039545 -151560385 - AluSx SINE Alu -13 299 1 1219 175 29 107 chrX 11039545 11039645 -151560285 + L1MD3 LINE L1 7823 7929 -66 194 253 0 13 chrX 11040648 11040727 -151559203 + (TA)n Simple_repeat Simple_repeat 1 78 0 199 128 0 43 chrX 11041280 11041327 -151558603 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 789 192 0 0 chrX 11041766 11041891 -151558039 + FLAM_A SINE Alu 1 125 -8 22 0 0 0 chrX 11041891 11041913 -151558017 + AT_rich Low_complexity Low_complexity 1 22 0 1164 231 62 53 chrX 11042236 11042396 -151557534 + MER58B DNA MER1_type 1 158 -2262 4102 88 11 0 chrX 11042396 11042942 -151556988 + L1PA13 LINE L1 5612 6163 0 1164 231 62 53 chrX 11042942 11043119 -151556811 + MER58B DNA MER1_type 158 341 0 1203 200 60 12 chrX 11043963 11044422 -151555508 - MLT1E1 LTR MaLR -4 650 109 480 281 34 92 chrX 11044507 11044745 -151555185 + MIR SINE MIR 36 259 -3 214 302 0 0 chrX 11046275 11046328 -151553602 - L2 LINE L2 -1 3271 3219 1765 160 0 0 chrX 11048416 11048679 -151551251 - AluJb SINE Alu -45 267 5 6058 96 54 3 chrX 11048684 11049574 -151550356 + Tigger3b DNA MER2_type 295 1229 -2 22 35 0 0 chrX 11049896 11049925 -151550005 + AT_rich Low_complexity Low_complexity 1 29 0 2165 130 0 0 chrX 11050353 11050654 -151549276 - AluSx SINE Alu -11 301 1 2397 87 0 3 chrX 11050980 11051280 -151548650 - AluSg SINE Alu -11 299 1 2544 75 0 0 chrX 11051297 11051605 -151548325 - AluSg SINE Alu -2 308 1 333 212 76 0 chrX 11052554 11052620 -151547310 + MIR SINE MIR 74 144 -64 345 85 0 0 chrX 11052624 11052671 -151547259 - MADE1 DNA Mariner 0 80 34 468 80 23 34 chrX 11053071 11053159 -151546771 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 260 250 114 71 chrX 11054192 11054332 -151545598 - L2 LINE L2 -102 3211 3066 399 246 49 28 chrX 11054360 11054502 -151545428 - MIR3 SINE MIR -49 159 15 486 268 225 0 chrX 11054783 11054925 -151545005 - MER5A DNA MER1_type -7 182 9 2358 70 3 3 chrX 11056710 11057011 -151542919 - AluY SINE Alu -10 301 1 1326 202 27 0 chrX 11057229 11057487 -151542443 - L1MD3 LINE L1 -2 7993 7729 238 274 69 39 chrX 11057533 11057635 -151542295 - L2 LINE L2 -6 3266 3162 877 146 0 0 chrX 11058859 11058982 -151540948 + FLAM_C SINE Alu 1 123 -20 192 77 0 0 chrX 11058982 11059008 -151540922 + (TAA)n Simple_repeat Simple_repeat 2 27 0 311 325 78 36 chrX 11059008 11059174 -151540756 + MIR SINE MIR 90 262 0 1609 208 13 92 chrX 11059355 11059754 -151540176 + MLT1D LTR MaLR 68 497 -8 2281 105 3 0 chrX 11059754 11060058 -151539872 + AluSq SINE Alu 1 305 -8 1493 120 10 0 chrX 11060066 11060274 -151539656 + L1PA15 LINE L1 5950 6159 -6 1609 208 13 92 chrX 11060274 11060341 -151539589 + MLT1D LTR MaLR 434 505 0 773 279 28 5 chrX 11061677 11061892 -151538038 + MIR SINE MIR 40 259 -3 25 0 0 0 chrX 11062190 11062215 -151537715 + AT_rich Low_complexity Low_complexity 1 25 0 2469 82 0 0 chrX 11062260 11062563 -151537367 + AluSg SINE Alu 1 303 -7 201 277 44 66 chrX 11062747 11062884 -151537046 + L2 LINE L2 3170 3303 -10 3018 125 7 2 chrX 11063726 11064157 -151535773 + MER57B LTR ERV1 2 434 0 198 302 79 0 chrX 11064259 11064322 -151535608 + MIR3 SINE MIR 127 194 -14 517 335 57 1 chrX 11064355 11064575 -151535355 + MIR SINE MIR 15 245 -17 180 0 0 0 chrX 11064584 11064604 -151535326 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1369 170 4 48 chrX 11064712 11064983 -151534947 + AluJb SINE Alu 1 259 -53 1978 137 10 10 chrX 11065167 11065466 -151534464 - AluSq SINE Alu -14 299 1 41321 73 3 2 chrX 11065599 11071735 -151528195 - L1PA7 LINE L1 -15 6139 3 2200 116 0 3 chrX 11071826 11072129 -151527801 + AluSg SINE Alu 1 302 -8 434 188 20 30 chrX 11072378 11072479 -151527451 - MER20B DNA MER1_type -2 781 682 404 289 19 13 chrX 11072532 11072688 -151527242 - L1M4 LINE L1 -1500 4646 4490 798 241 105 8 chrX 11072698 11073129 -151526801 - LTR33 LTR ERVL -9 512 14 491 306 33 0 chrX 11073376 11073559 -151526371 + MIR SINE MIR 74 262 0 1183 178 84 0 chrX 11073937 11074139 -151525791 + MER20 DNA MER1_type 1 219 0 24 32 0 0 chrX 11074521 11074552 -151525378 + AT_rich Low_complexity Low_complexity 1 31 0 241 333 0 70 chrX 11075304 11075319 -151524611 + MIR SINE MIR 47 61 -201 2047 153 80 49 chrX 11075319 11075771 -151524159 - MER31B LTR ERV1 0 466 1 241 333 0 70 chrX 11075771 11075911 -151524019 + MIR SINE MIR 61 191 -71 579 243 43 102 chrX 11076591 11076649 -151523281 + L1ME4a LINE L1 5610 5670 -451 3194 67 15 0 chrX 11076649 11077051 -151522879 + L1PA10 LINE L1 5760 6167 -1 579 243 43 102 chrX 11077051 11077297 -151522633 + L1ME4a LINE L1 5670 5896 -225 274 308 29 0 chrX 11077434 11077538 -151522392 - MIR SINE MIR -107 155 49 1076 203 98 67 chrX 11077888 11078204 -151521726 + MER58B DNA MER1_type 3 328 -13 714 218 184 49 chrX 11079472 11079820 -151520110 - MLT1G LTR MaLR 0 590 196 246 156 0 0 chrX 11079823 11079868 -151520062 + GA-rich Low_complexity Low_complexity 1 45 0 233 221 128 12 chrX 11079913 11079999 -151519931 + L2 LINE L2 1737 1832 -1482 1347 307 48 13 chrX 11080013 11080786 -151519144 + L2 LINE L2 2507 3305 -8 315 313 59 84 chrX 11080957 11081280 -151518650 - L1ME4a LINE L1 -89 6032 5718 2111 109 0 0 chrX 11081330 11081635 -151518295 + AluSx SINE Alu 1 305 0 223 326 11 21 chrX 11081848 11081943 -151517987 - MIR3 SINE MIR -1 207 114 387 237 52 21 chrX 11082605 11082702 -151517228 + L2 LINE L2 3170 3269 -3 3029 85 0 3 chrX 11082790 11083155 -151516775 + THE1B LTR MaLR 1 364 0 2185 120 3 0 chrX 11083250 11083551 -151516379 - AluSx SINE Alu -10 302 1 255 212 136 68 chrX 11083782 11083914 -151516016 + MIR SINE MIR 108 248 -14 343 202 0 140 chrX 11084570 11084684 -151515246 + MER58 DNA MER1_type 1 98 -243 207 272 109 11 chrX 11085232 11085324 -151514606 - L2 LINE L2 -5 3308 3208 509 176 133 66 chrX 11085573 11085783 -151514147 + MER58 DNA MER1_type 1 2415 -5 833 196 101 6 chrX 11085797 11085965 -151513965 + MER3 DNA MER1_type 1 184 -25 1033 267 44 85 chrX 11086658 11087186 -151512744 - MLT1J LTR MaLR 0 511 6 242 258 101 22 chrX 11087378 11087467 -151512463 + L2 LINE L2 3137 3232 -40 368 256 136 42 chrX 11087972 11088163 -151511767 - L2 LINE L2 0 3313 3105 376 61 0 0 chrX 11088183 11088232 -151511698 + MIR SINE MIR 107 155 -107 2201 109 0 0 chrX 11088239 11088566 -151511364 + AluSq SINE Alu 1 327 0 235 193 101 118 chrX 11088567 11088686 -151511244 + MER46C DNA MER2_type 19 135 -203 49 107 0 0 chrX 11088686 11088882 -151511048 + AT_rich Low_complexity Low_complexity 1 196 0 1015 199 44 22 chrX 11088882 11089108 -151510822 + MER46C DNA MER2_type 108 338 0 401 247 22 0 chrX 11089117 11089206 -151510724 + MIR SINE MIR 172 262 0 710 320 76 12 chrX 11089240 11089729 -151510201 - L2 LINE L2 -245 3068 2544 529 134 116 71 chrX 11089877 11089989 -151509941 - MER63 DNA MER1_type -319 743 1 190 325 13 26 chrX 11090741 11090818 -151509112 - L2 LINE L2 -475 2839 2764 488 173 0 0 chrX 11090839 11090914 -151509016 + AluJ/FLAM SINE Alu 2 76 -236 1790 151 10 10 chrX 11091283 11091581 -151508349 - AluJo SINE Alu -12 300 3 449 254 59 0 chrX 11091937 11092055 -151507875 - MER94 DNA DNA -8 126 2 316 244 52 0 chrX 11092266 11092351 -151507579 + MIR SINE MIR 68 157 -51 2388 84 7 0 chrX 11096421 11096729 -151503201 + AluSg SINE Alu 1 310 0 1737 97 4 0 chrX 11099104 11099332 -151500598 + AluSg/x SINE Alu 83 311 -1 235 208 62 115 chrX 11100953 11101083 -151498847 - MIR SINE MIR -49 213 91 236 220 0 34 chrX 11102346 11102405 -151497525 - L1MC4 LINE L1 -1339 6703 6647 28 86 0 0 chrX 11102531 11102601 -151497329 + AT_rich Low_complexity Low_complexity 1 70 0 2347 100 3 0 chrX 11102630 11102931 -151496999 - AluSx SINE Alu -10 302 1 366 107 0 0 chrX 11103830 11103886 -151496044 + (TA)n Simple_repeat Simple_repeat 2 57 0 207 307 0 27 chrX 11103888 11103963 -151495967 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 180 0 0 0 chrX 11103965 11103985 -151495945 + (TG)n Simple_repeat Simple_repeat 1 20 0 205 188 0 0 chrX 11104680 11104712 -151495218 - L2 LINE L2 -81 3232 3201 2018 116 41 7 chrX 11104734 11105026 -151494904 + AluSx SINE Alu 1 302 -10 408 40 0 0 chrX 11105154 11105204 -151494726 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 391 301 9 9 chrX 11105213 11105326 -151494604 - L2 LINE L2 -2 3270 3158 330 317 33 39 chrX 11105494 11105674 -151494256 - L2 LINE L2 -901 2413 2235 539 210 0 0 chrX 11105725 11105825 -151494105 + MER5A DNA MER1_type 9 108 -81 1218 184 121 18 chrX 11105947 11106219 -151493711 - AluJo SINE Alu -12 300 1 862 201 29 6 chrX 11106257 11106431 -151493499 - MER5B DNA MER1_type 0 178 1 822 179 19 26 chrX 11106458 11106614 -151493316 - MER5A DNA MER1_type -4 185 31 220 383 109 34 chrX 11106620 11106795 -151493135 - MER5A DNA MER1_type -1 188 1 605 124 21 10 chrX 11107334 11107431 -151492499 + MER4A LTR ERV1 1 98 -566 1908 120 174 23 chrX 11107431 11107782 -151492148 + MER4A LTR ERV1 261 664 0 2473 37 41 0 chrX 11108266 11108561 -151491369 + AluY SINE Alu 2 308 -3 1803 122 20 0 chrX 11108603 11108889 -151491041 + AluJo SINE Alu 26 316 0 499 299 91 32 chrX 11109775 11110180 -151489750 + L1ME4a LINE L1 5690 6118 -3 236 54 54 0 chrX 11110250 11110287 -151489643 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 306 248 167 0 chrX 11110395 11110517 -151489413 + MIR SINE MIR 16 154 -62 3894 96 46 4 chrX 11111264 11111826 -151488104 + Tigger3(Golem) DNA MER2_type 2443 3028 -1 22 35 0 0 chrX 11112147 11112176 -151487754 + AT_rich Low_complexity Low_complexity 1 29 0 2165 130 0 0 chrX 11112604 11112905 -151487025 - AluSx SINE Alu -11 301 1 2388 87 0 3 chrX 11113231 11113530 -151486400 - AluSg SINE Alu -12 298 1 2518 75 0 0 chrX 11113547 11113852 -151486078 - AluSg SINE Alu -5 305 1 333 212 76 0 chrX 11114801 11114867 -151485063 + MIR SINE MIR 74 144 -64 345 85 0 0 chrX 11114871 11114918 -151485012 - MADE1 DNA Mariner 0 80 34 432 83 24 36 chrX 11115318 11115402 -151484528 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 260 250 114 71 chrX 11116435 11116575 -151483355 - L2 LINE L2 -102 3211 3066 399 246 49 28 chrX 11116603 11116745 -151483185 - MIR3 SINE MIR -49 159 15 486 268 225 0 chrX 11117026 11117168 -151482762 - MER5A DNA MER1_type -7 182 9 2358 70 3 3 chrX 11118953 11119254 -151480676 - AluY SINE Alu -10 301 1 1326 202 27 0 chrX 11119472 11119730 -151480200 - L1MD3 LINE L1 -2 7993 7729 238 274 69 39 chrX 11119776 11119878 -151480052 - L2 LINE L2 -6 3266 3162 877 146 0 0 chrX 11121102 11121225 -151478705 + FLAM_C SINE Alu 1 123 -20 192 77 0 0 chrX 11121225 11121251 -151478679 + (TAA)n Simple_repeat Simple_repeat 2 27 0 311 325 78 36 chrX 11121251 11121417 -151478513 + MIR SINE MIR 90 262 0 1609 208 13 92 chrX 11121598 11121997 -151477933 + MLT1D LTR MaLR 68 497 -8 2281 105 3 0 chrX 11121997 11122301 -151477629 + AluSq SINE Alu 1 305 -8 1493 120 10 0 chrX 11122309 11122517 -151477413 + L1PA15 LINE L1 5950 6159 -6 1609 208 13 92 chrX 11122517 11122584 -151477346 + MLT1D LTR MaLR 434 505 0 773 279 28 5 chrX 11123920 11124135 -151475795 + MIR SINE MIR 40 259 -3 25 0 0 0 chrX 11124433 11124458 -151475472 + AT_rich Low_complexity Low_complexity 1 25 0 2461 83 0 0 chrX 11124503 11124805 -151475125 + AluSg SINE Alu 1 302 -8 201 277 44 66 chrX 11124989 11125126 -151474804 + L2 LINE L2 3170 3303 -10 3018 125 7 2 chrX 11125968 11126399 -151473531 + MER57B LTR ERV1 2 434 0 198 302 79 0 chrX 11126501 11126564 -151473366 + MIR3 SINE MIR 127 194 -14 517 335 57 1 chrX 11126597 11126817 -151473113 + MIR SINE MIR 15 245 -17 180 0 0 0 chrX 11126826 11126846 -151473084 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1686 167 3 40 chrX 11126954 11127277 -151472653 + AluJb SINE Alu 1 311 -1 2002 118 0 0 chrX 11127701 11127972 -151471958 - AluSx SINE Alu -41 271 1 330 257 86 9 chrX 11128021 11128126 -151471804 - MIR SINE MIR -62 200 88 1736 153 22 32 chrX 11128565 11128878 -151471052 + AluJo SINE Alu 1 310 -2 1882 168 0 22 chrX 11129597 11129912 -151470018 + AluJo SINE Alu 2 309 -3 2119 127 3 22 chrX 11130522 11130837 -151469093 + AluSx SINE Alu 1 309 -3 385 250 80 46 chrX 11130881 11131076 -151468854 - L1ME LINE L1 -410 5711 5522 269 238 125 12 chrX 11131386 11131466 -151468464 + MIR3 SINE MIR 118 206 -2 1706 158 14 0 chrX 11131543 11131821 -151468109 - AluJo SINE Alu -30 282 1 442 194 48 48 chrX 11131849 11131973 -151467957 - MIR SINE MIR -74 188 65 1003 171 6 0 chrX 11132774 11132944 -151466986 - FRAM SINE Alu -2 174 4 330 305 133 17 chrX 11132949 11133182 -151466748 - L2 LINE L2 -343 2971 2712 2362 62 23 13 chrX 11133935 11134242 -151465688 - AluY SINE Alu 0 311 2 375 23 0 0 chrX 11135416 11135460 -151464470 + (GA)n Simple_repeat Simple_repeat 1 44 0 1346 247 29 18 chrX 11137341 11137725 -151462205 - L1ME1 LINE L1 -5 6161 5771 570 240 72 50 chrX 11137917 11138138 -151461792 - L2 LINE L2 0 3313 3088 229 208 21 0 chrX 11139155 11139203 -151460727 - MIR3 SINE MIR -30 178 130 231 118 0 0 chrX 11139332 11139366 -151460564 + L1ME1 LINE L1 6123 6156 -10 2297 96 3 3 chrX 11140716 11141019 -151458911 - AluSx SINE Alu -9 303 1 1859 143 66 9 chrX 11142107 11142442 -151457488 + L1MA4 LINE L1 5941 6294 -6 242 318 95 16 chrX 11142461 11142587 -151457343 - MIR SINE MIR -2 260 125 1162 169 19 0 chrX 11143447 11143654 -151456276 + L1MC1 LINE L1 6113 6323 -10 224 210 0 16 chrX 11143654 11143716 -151456214 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 267 173 0 0 chrX 11143742 11143794 -151456136 + (CA)n Simple_repeat Simple_repeat 2 53 0 237 200 18 0 chrX 11144488 11144543 -151455387 + PABL_A LTR ERV1 422 477 -183 581 246 56 6 chrX 11148177 11148356 -151451574 + L2 LINE L2 663 850 -2464 557 293 39 6 chrX 11148427 11148608 -151451322 - MIR SINE MIR -68 194 8 460 267 193 41 chrX 11148638 11149001 -151450929 + L2 LINE L2 872 1289 -2025 2486 60 3 0 chrX 11150495 11150794 -151449136 - AluY SINE Alu -11 300 1 1541 133 4 0 chrX 11151680 11151906 -151448024 + L1PA15 LINE L1 5935 6161 -4 1958 147 6 13 chrX 11154536 11154713 -151445217 - AluJb SINE Alu 0 312 136 2024 115 6 43 chrX 11154713 11155035 -151444895 - AluSx SINE Alu -2 310 1 1958 147 6 13 chrX 11155035 11155171 -151444759 - AluJb SINE Alu -176 136 1 263 222 42 62 chrX 11156327 11156471 -151443459 + L1MC5 LINE L1 7784 7924 -37 305 358 101 28 chrX 11156855 11157073 -151442857 + L2 LINE L2 3027 3260 -12 484 314 18 0 chrX 11157183 11157352 -151442578 - MER5B DNA MER1_type 0 178 7 1302 140 14 14 chrX 11157470 11157684 -151442246 + MER20 DNA MER1_type 6 219 0 297 271 14 0 chrX 11158435 11158505 -151441425 + L2 LINE L2 3202 3272 0 392 194 223 109 chrX 11158892 11159139 -151440791 - ORSL DNA AcHobo 0 275 1 2201 132 3 0 chrX 11159199 11159510 -151440420 - AluSx SINE Alu 0 312 1 187 368 0 0 chrX 11159702 11159770 -151440160 - L2 LINE L2 -836 2478 2411 2304 105 3 0 chrX 11160133 11160437 -151439493 + AluSp SINE Alu 1 305 -8 1197 215 9 5 chrX 11160619 11160842 -151439088 + MER58A DNA MER1_type 1 224 0 1836 143 3 17 chrX 11162847 11163164 -151436766 - AluSx SINE Alu 0 313 1 28 29 0 0 chrX 11163678 11163713 -151436217 + AT_rich Low_complexity Low_complexity 1 35 0 551 277 148 61 chrX 11163905 11164284 -151435646 - L1MC4a LINE L1 -1875 5933 5522 183 156 0 0 chrX 11164370 11164402 -151435528 + CT-rich Low_complexity Low_complexity 2 33 0 256 277 0 60 chrX 11165065 11165148 -151434782 - LTR67 LTR ERVL -377 180 103 487 225 129 66 chrX 11166310 11166375 -151433555 + L1MC5 LINE L1 7654 7713 -248 1370 140 33 9 chrX 11166375 11166589 -151433341 - MER20 DNA MER1_type 0 219 1 487 225 129 66 chrX 11166589 11166794 -151433136 + L1MC5 LINE L1 7713 7941 -20 727 280 36 40 chrX 11167664 11167914 -151432016 + MIR SINE MIR 14 262 0 498 311 34 17 chrX 11168782 11168959 -151430971 + MER5A DNA MER1_type 5 184 -5 854 158 0 0 chrX 11169416 11169536 -151430394 + FLAM_C SINE Alu 1 120 -13 204 40 0 0 chrX 11169542 11169567 -151430363 + (TG)n Simple_repeat Simple_repeat 2 26 0 2637 78 50 31 chrX 11170570 11170927 -151429003 - THE1B LTR MaLR 0 364 1 12985 80 1 3 chrX 11170927 11172510 -151427420 - THE1B-int LTR MaLR 0 1580 1 2104 112 52 33 chrX 11172510 11172840 -151427090 - THE1B LTR MaLR 0 364 29 1563 153 108 28 chrX 11172952 11173240 -151426690 - AluJo SINE Alu 0 312 2 1849 174 0 0 chrX 11173251 11173545 -151426385 - AluJb SINE Alu -18 294 1 241 294 84 25 chrX 11173614 11173733 -151426197 + MIR SINE MIR 26 151 -111 275 297 136 8 chrX 11173969 11174087 -151425843 + L2 LINE L2 3136 3268 -4 274 326 70 8 chrX 11174331 11174460 -151425470 + L2 LINE L2 3136 3272 0 * 602 239 24 106 chrX 11174457 11174574 -151425356 - MIR SINE MIR 0 262 175 2076 117 0 3 chrX 11174574 11174881 -151425049 - AluSx SINE Alu 0 306 1 602 239 24 106 chrX 11174881 11175017 -151424913 - MIR SINE MIR -87 175 29 1428 188 48 72 chrX 11175025 11175295 -151424635 - Charlie1b DNA MER1_type -2238 523 267 1930 164 7 0 chrX 11175295 11175605 -151424325 - AluJo SINE Alu 0 312 1 1428 188 48 72 chrX 11175605 11175776 -151424154 - Charlie1b DNA MER1_type -2494 267 93 2294 108 0 3 chrX 11176755 11177061 -151422869 - AluSx SINE Alu -7 305 1 1997 149 0 7 chrX 11177522 11177844 -151422086 + AluJb SINE Alu 1 312 0 794 280 149 30 chrX 11177984 11178413 -151421517 + MLT1H1 LTR MaLR 68 547 -8 1962 152 0 13 chrX 11178772 11179087 -151420843 + AluSx SINE Alu 1 311 -1 385 129 14 43 chrX 11179245 11179315 -151420615 + MLT1G LTR MaLR 223 290 -300 1391 161 49 67 chrX 11180141 11180470 -151419460 + MER33 DNA MER1_type 1 323 -1 2226 50 0 0 chrX 11181308 11181567 -151418363 - AluY SINE Alu -13 298 40 219 167 0 0 chrX 11181567 11181609 -151418321 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2137 205 116 43 chrX 11182331 11182818 -151417112 + MLT1E LTR MaLR 2 535 -58 1822 174 10 3 chrX 11182818 11183129 -151416801 + AluSq SINE Alu 1 313 0 2137 205 116 43 chrX 11183129 11183193 -151416737 + MLT1E LTR MaLR 535 593 0 313 179 265 8 chrX 11183252 11183369 -151416561 - MER5C DNA MER1_type -6 318 172 447 217 181 12 chrX 11183392 11183558 -151416372 - MER5C DNA MER1_type -92 232 39 438 339 44 22 chrX 11183608 11183835 -151416095 - MIR SINE MIR 0 262 31 594 260 13 20 chrX 11184237 11184387 -151415543 - MER5B DNA MER1_type -24 154 6 450 249 148 47 chrX 11185013 11185182 -151414748 + MER5A DNA MER1_type 4 189 0 434 226 83 15 chrX 11185186 11185319 -151414611 - MER103 DNA DNA -20 146 5 484 251 43 59 chrX 11185344 11185396 -151414534 - L1ME3A LINE L1 -1 6169 6118 2914 202 8 8 chrX 11185396 11185915 -151414015 + LTR40a LTR ERVL 1 519 0 484 251 43 59 chrX 11185915 11186049 -151413881 - L1ME3A LINE L1 -52 6118 5986 684 261 101 10 chrX 11186114 11186321 -151413609 - MIR SINE MIR -6 256 31 2301 89 0 35 chrX 11186322 11186637 -151413293 - AluSq SINE Alu -9 304 1 565 310 26 0 chrX 11186856 11187011 -151412919 + MIR3 SINE MIR 45 203 -5 215 31 31 0 chrX 11187258 11187290 -151412640 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 240 111 0 0 chrX 11187351 11187387 -151412543 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 300 332 135 31 chrX 11187388 11187713 -151412217 - L2 LINE L2 0 3272 2914 2090 97 20 23 chrX 11188910 11189210 -151410720 - AluSg1 SINE Alu -10 299 1 658 229 98 71 chrX 11189588 11189633 -151410297 + L2 LINE L2 2701 2743 -570 2673 152 52 7 chrX 11189633 11190093 -151409837 + L1MB5 LINE L1 5694 6174 0 658 229 98 71 chrX 11190093 11190516 -151409414 + L2 LINE L2 2743 3189 -124 729 175 114 81 chrX 11192185 11192396 -151407534 + MER20 DNA MER1_type 1 218 -1 1844 140 0 14 chrX 11192826 11193105 -151406825 + AluSx SINE Alu 1 275 -37 5277 80 6 3 chrX 11193105 11193746 -151406184 - LTR9B LTR ERV1 -1 643 1 249 57 0 0 chrX 11193758 11193793 -151406137 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 307 274 230 22 chrX 11194041 11194176 -151405754 + MIR3 SINE MIR 21 183 -25 2069 91 4 0 chrX 11194573 11194837 -151405093 - AluSp SINE Alu -10 303 39 229 25 0 50 chrX 11195663 11195703 -151404227 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2187 82 4 0 chrX 11196242 11196510 -151403420 - AluSp SINE Alu -16 297 29 1742 177 7 13 chrX 11198004 11198303 -151401627 + AluJb SINE Alu 1 297 -15 21 36 0 0 chrX 11198385 11198413 -151401517 + AT_rich Low_complexity Low_complexity 1 28 0 742 286 49 53 chrX 11198414 11198698 -151401232 - L1ME4a LINE L1 -16 6105 5822 2359 82 0 16 chrX 11198698 11199001 -151400929 - AluSg SINE Alu -12 298 1 742 286 49 53 chrX 11199001 11199285 -151400645 - L1ME4a LINE L1 -299 5822 5539 586 269 52 24 chrX 11201197 11201409 -151398521 - MIR SINE MIR -42 220 3 987 137 0 46 chrX 11201823 11201998 -151397932 + MER20 DNA MER1_type 1 167 -52 2083 174 119 30 chrX 11202294 11202755 -151397175 + MLT1D LTR MaLR 1 502 -3 188 297 33 44 chrX 11203171 11203262 -151396668 + L2 LINE L2 3206 3295 -18 2684 187 27 32 chrX 11203409 11204003 -151395927 - L1ME3 LINE L1 0 6162 5572 209 195 0 0 chrX 11205113 11205154 -151394776 + T-rich Low_complexity Low_complexity 2 42 0 2341 96 0 19 chrX 11205597 11205909 -151394021 - AluSg1 SINE Alu -3 306 1 180 0 0 0 chrX 11206042 11206062 -151393868 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2861 200 59 15 chrX 11206071 11206737 -151393193 - L1ME1 LINE L1 -5 6161 5467 856 155 0 0 chrX 11206779 11206908 -151393022 + FRAM SINE Alu 25 153 -23 639 182 51 132 chrX 11206930 11207255 -151392675 - L1ME1 LINE L1 -694 5472 5177 1149 179 6 35 chrX 11207386 11207709 -151392221 + MLT1A1 LTR MaLR 1 365 0 487 320 11 17 chrX 11207759 11207937 -151391993 - MER5A DNA MER1_type -6 183 7 835 134 0 24 chrX 11208276 11208403 -151391527 + FLAM_C SINE Alu 9 132 -11 3687 155 102 23 chrX 11208716 11209445 -151390485 - LTR48 LTR ERV1 0 787 2 459 249 102 69 chrX 11210167 11210472 -151389458 - L1ME4a LINE L1 -17 6104 5790 475 264 289 0 chrX 11210485 11210686 -151389244 - MIR SINE MIR -2 260 2 203 0 37 0 chrX 11211843 11211870 -151388060 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 359 317 0 25 chrX 11212352 11212472 -151387458 - L2 LINE L2 0 3313 3197 1636 181 21 9 chrX 11212505 11212831 -151387099 + L1MB7 LINE L1 5290 5619 -565 3583 135 24 24 chrX 11212835 11213419 -151386511 - MER41B LTR ERV1 -48 587 4 3249 157 23 14 chrX 11213419 11213975 -151385955 + L1MB7 LINE L1 5613 6173 -11 214 230 37 118 chrX 11214002 11214137 -151385793 - L2 LINE L2 -358 2955 2832 2013 128 0 0 chrX 11214959 11215233 -151384697 - AluSx SINE Alu -38 274 1 29 0 0 0 chrX 11215428 11215457 -151384473 + GC_rich Low_complexity Low_complexity 1 29 0 272 275 79 62 chrX 11215729 11215907 -151384023 - L1P4 LINE L1 -568 5597 5417 1565 170 0 8 chrX 11215910 11216175 -151383755 - AluJb SINE Alu -11 301 39 3122 150 46 28 chrX 11216491 11216919 -151383011 + L1MB4 LINE L1 5604 6046 -134 1965 148 34 0 chrX 11216919 11217216 -151382714 - AluSx SINE Alu -5 307 1 3122 150 46 28 chrX 11217216 11217352 -151382578 + L1MB4 LINE L1 6046 6178 -2 440 254 137 50 chrX 11217446 11217943 -151381987 - L1M4 LINE L1 -2685 3461 2922 1659 141 160 10 chrX 11218274 11218586 -151381344 + MSTA LTR MaLR 1 359 -69 657 86 0 0 chrX 11218586 11218679 -151381251 - L1M3 LINE L1 -500 5680 5588 2430 93 0 0 chrX 11218705 11219015 -151380915 - AluSg SINE Alu 0 310 1 818 129 0 168 chrX 11219323 11219525 -151380405 + MER45A DNA AcHobo 1 168 -10 261 0 0 0 chrX 11220856 11220885 -151379045 + (A)n Simple_repeat Simple_repeat 1 29 0 389 306 19 64 chrX 11221307 11221464 -151378466 + L2 LINE L2 3116 3265 -7 637 282 72 0 chrX 11221531 11221712 -151378218 + MIR SINE MIR 3 196 -66 25 31 0 0 chrX 11221837 11221869 -151378061 + AT_rich Low_complexity Low_complexity 1 32 0 2337 102 10 0 chrX 11222209 11222513 -151377417 - AluSx SINE Alu -5 307 1 782 151 27 62 chrX 11223075 11223221 -151376709 + FLAM_C SINE Alu 2 142 -1 2067 144 0 3 chrX 11223390 11223688 -151376242 + AluSx SINE Alu 1 297 -15 1288 163 13 13 chrX 11223782 11224015 -151375915 + MER65C LTR ERV1 1 233 -228 2537 147 45 2 chrX 11224015 11224417 -151375513 - MSTB LTR MaLR 0 426 8 1480 112 8 33 chrX 11224420 11224661 -151375269 + MER65C LTR ERV1 227 461 0 2088 132 10 10 chrX 11225567 11225878 -151374052 - AluJb SINE Alu -1 311 1 267 372 34 34 chrX 11226003 11226151 -151373779 + L2 LINE L2 3125 3272 0 361 291 34 8 chrX 11226189 11226306 -151373624 - L2 LINE L2 -2 3311 3192 3268 112 42 15 chrX 11226615 11227553 -151372377 - MER11C LTR ERVK 0 1071 1 389 86 17 0 chrX 11228069 11228127 -151371803 + L1PA6 LINE L1 6093 6151 -3 1054 164 13 69 chrX 11229807 11230039 -151369891 - MER20 DNA MER1_type 0 219 1 249 21 43 43 chrX 11230227 11230274 -151369656 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 863 213 4 101 chrX 11230314 11230591 -151369339 + MIR SINE MIR 7 256 -6 387 336 18 21 chrX 11231157 11231400 -151368530 + MIR SINE MIR 20 260 -2 1552 160 132 21 chrX 11231512 11231837 -151368093 + MLT1A1 LTR MaLR 5 365 0 259 286 63 48 chrX 11231847 11231973 -151367957 - MIR SINE MIR -62 146 19 494 274 153 6 chrX 11231978 11232135 -151367795 - MER5A DNA MER1_type 0 189 10 2076 153 12 21 chrX 11232911 11233250 -151366680 - MER58B DNA MER1_type -1 340 5 1695 126 67 22 chrX 11235211 11235514 -151364416 - AluSg SINE Alu 0 315 1 1140 138 40 62 chrX 11235872 11236096 -151363834 - MER20 DNA MER1_type 0 219 1 381 297 45 0 chrX 11236927 11237038 -151362892 - L2 LINE L2 -1 3312 3197 935 99 7 0 chrX 11238093 11238234 -151361696 + (TA)n Simple_repeat Simple_repeat 2 143 0 2594 68 0 3 chrX 11238234 11238544 -151361386 - AluY SINE Alu -2 309 1 212 175 0 25 chrX 11239543 11239583 -151360347 + (CA)n Simple_repeat Simple_repeat 2 40 0 3886 138 87 43 chrX 11240316 11240633 -151359297 - MER4-int LTR ERV1 -4794 1804 1502 186 43 0 0 chrX 11240633 11240656 -151359274 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3886 138 87 43 chrX 11240656 11240975 -151358955 - MER4-int LTR ERV1 -5096 1502 1198 369 0 0 0 chrX 11240975 11241016 -151358914 + (CA)n Simple_repeat Simple_repeat 2 42 0 3886 138 87 43 chrX 11241016 11241279 -151358651 - MER4-int LTR ERV1 -5400 1198 865 230 192 19 39 chrX 11241279 11241331 -151358599 - LTR49 LTR ERV1 -282 313 263 450 70 9 49 chrX 11241392 11241507 -151358423 - MER4-int LTR ERV1 -5769 829 654 2905 82 95 7 chrX 11241507 11241919 -151358011 + LTR7 LTR ERV1 1 448 -2 20459 86 31 21 chrX 11241921 11244876 -151355054 + HERVH LTR ERV1 1 2987 -4726 946 128 20 0 chrX 11244870 11245018 -151354912 + HERVH LTR ERV1 3140 3290 -4423 * 3347 110 10 6 chrX 11245008 11245508 -151354422 + HERVH LTR ERV1 3492 3993 -3720 4426 141 0 6 chrX 11245510 11246176 -151353754 + HERVH LTR ERV1 4488 5149 -2564 1417 130 19 0 chrX 11246177 11246393 -151353537 + HERVH LTR ERV1 5600 5819 -1894 2471 85 50 13 chrX 11246393 11246769 -151353161 + HERVH LTR ERV1 7324 7713 0 2924 85 95 5 chrX 11246769 11247180 -151352750 + LTR7 LTR ERV1 1 448 -2 224 181 0 34 chrX 11247188 11247255 -151352675 + A-rich Low_complexity Low_complexity 1 64 0 690 286 49 53 chrX 11448811 11449095 -151150835 + L1ME4a LINE L1 5539 5822 -299 2384 82 0 16 chrX 11449095 11449398 -151150532 + AluSg SINE Alu 1 298 -12 690 286 49 53 chrX 11449398 11449682 -151150248 + L1ME4a LINE L1 5822 6105 -16 21 36 0 0 chrX 11449683 11449711 -151150219 + AT_rich Low_complexity Low_complexity 1 28 0 1759 177 7 13 chrX 11449793 11450092 -151149838 - AluJb SINE Alu -15 297 1 2205 82 4 0 chrX 11451585 11451853 -151148077 + AluSp SINE Alu 29 297 -16 229 25 0 50 chrX 11452392 11452432 -151147498 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2084 91 4 0 chrX 11453258 11453522 -151146408 + AluSp SINE Alu 39 303 -10 264 274 230 22 chrX 11453919 11454054 -151145876 - MIR3 SINE MIR -25 183 21 249 57 0 0 chrX 11454302 11454337 -151145593 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 4989 83 6 3 chrX 11454349 11454990 -151144940 + LTR9B LTR ERV1 1 643 -1 1862 140 0 14 chrX 11454990 11455269 -151144661 - AluSx SINE Alu -37 275 1 670 175 114 81 chrX 11455699 11455910 -151144020 - MER20 DNA MER1_type -1 218 1 572 235 95 68 chrX 11457579 11458002 -151141928 - L2 LINE L2 -124 3189 2743 2540 152 52 7 chrX 11458002 11458462 -151141468 - L1MB5 LINE L1 0 6174 5694 572 235 95 68 chrX 11458462 11458507 -151141423 - L2 LINE L2 -570 2743 2701 2106 97 20 23 chrX 11458885 11459185 -151140745 + AluSg1 SINE Alu 1 299 -10 235 310 41 35 chrX 11460382 11460527 -151139403 + L2 LINE L2 2914 3059 -213 214 295 13 51 chrX 11460629 11460707 -151139223 + L2 LINE L2 3239 3313 0 240 111 0 0 chrX 11460708 11460744 -151139186 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 215 31 31 0 chrX 11460805 11460837 -151139093 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 383 297 27 14 chrX 11461084 11461232 -151138698 - MIR3 SINE MIR -5 203 54 302 289 63 7 chrX 11461687 11461829 -151138101 + L1ME4a LINE L1 5971 6120 -1 2082 144 0 3 chrX 11461838 11462136 -151137794 + AluSx SINE Alu 1 297 -15 2647 136 11 44 chrX 11462230 11462463 -151137467 + MER65C LTR ERV1 1 211 -250 2431 152 44 7 chrX 11462463 11462870 -151137060 - MSTB LTR MaLR 0 426 5 2647 136 11 44 chrX 11462870 11463113 -151136817 + MER65C LTR ERV1 211 461 0 2104 131 10 10 chrX 11464019 11464331 -151135599 - AluJb SINE Alu 0 312 1 188 358 15 36 chrX 11464471 11464608 -151135322 + L2 LINE L2 3139 3272 0 325 291 34 8 chrX 11464646 11464763 -151135167 - L2 LINE L2 -2 3311 3192 3154 114 44 16 chrX 11465072 11466009 -151133921 - MER11C LTR ERVK 0 1071 1 372 86 17 0 chrX 11466525 11466583 -151133347 + L1PA6 LINE L1 6093 6151 -3 992 164 13 69 chrX 11468263 11468495 -151131435 - MER20 DNA MER1_type 0 219 1 249 21 43 43 chrX 11468683 11468730 -151131200 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 782 213 4 101 chrX 11468770 11469047 -151130883 + MIR SINE MIR 7 256 -6 335 336 18 21 chrX 11469613 11469856 -151130074 + MIR SINE MIR 20 260 -2 250 254 34 0 chrX 11469968 11470027 -151129903 + MLT1A2 LTR MaLR 5 65 -309 40218 40 5 2 chrX 11470149 11475028 -151124902 - L1P LINE L1 -1238 4908 13 200 255 31 71 chrX 11475032 11475130 -151124800 + MIR SINE MIR 119 212 -50 396 285 70 27 chrX 11475260 11475447 -151124483 + MLT1J LTR MaLR 1 259 -331 6264 178 184 57 chrX 11475461 11477017 -151122913 + MER52A LTR ERV1 1 1753 -2 284 243 58 39 chrX 11477191 11477294 -151122636 + MLT1J LTR MaLR 399 503 -8 1860 132 3 75 chrX 11477410 11477743 -151122187 - AluJb SINE Alu -3 309 1 338 196 37 28 chrX 11478094 11478201 -151121729 + L1ME4a LINE L1 5967 6074 -47 614 275 10 71 chrX 11478353 11478648 -151121282 + L1PB2 LINE L1 5752 6028 -123 * 2559 162 24 6 chrX 11478391 11478859 -151121071 + L1MA7 LINE L1 5774 6249 -42 815 167 0 0 chrX 11478860 11479004 -151120926 + L1MB7 LINE L1 6022 6165 -19 49 18 0 0 chrX 11479323 11479379 -151120551 + AT_rich Low_complexity Low_complexity 1 56 0 1641 194 109 19 chrX 11480373 11480796 -151119134 + LTR37B LTR ERV1 6 466 -2 871 220 90 29 chrX 11481208 11481485 -151118445 - LTR19C LTR ERV1 0 779 486 * 1643 183 22 80 chrX 11481463 11481878 -151118052 - LTR9 LTR ERV1 -221 391 1 895 187 25 30 chrX 11483848 11484046 -151115884 + MER33 DNA MER1_type 1 197 -127 2653 143 19 7 chrX 11484051 11484199 -151115731 - Tigger2a DNA MER2_type -2283 425 280 2456 76 0 0 chrX 11484199 11484489 -151115441 + AluY SINE Alu 1 290 -21 2653 143 19 7 chrX 11484489 11484760 -151115170 - Tigger2a DNA MER2_type -2428 280 1 464 132 7 118 chrX 11484760 11484894 -151115036 + MER33 DNA MER1_type 197 315 -9 27 0 0 0 chrX 11486243 11486270 -151113660 + AT_rich Low_complexity Low_complexity 1 27 0 306 222 222 15 chrX 11486326 11486409 -151113521 - MER5B DNA MER1_type -15 163 99 401 0 20 0 chrX 11486409 11486458 -151113472 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 306 222 222 15 chrX 11486458 11486509 -151113421 - MER5B DNA MER1_type -79 99 1 2081 128 3 0 chrX 11486531 11486820 -151113110 - AluSx SINE Alu -18 294 5 202 87 43 0 chrX 11486826 11486872 -151113058 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 601 185 106 33 chrX 11487095 11487246 -151112684 - MER5A DNA MER1_type -2 187 26 248 262 107 0 chrX 11487308 11487392 -151112538 - L2 LINE L2 -20 3252 3160 2330 108 0 7 chrX 11487507 11487812 -151112118 + AluSx SINE Alu 1 303 -9 21 36 0 0 chrX 11487859 11487887 -151112043 + AT_rich Low_complexity Low_complexity 1 28 0 242 300 65 27 chrX 11488490 11488637 -151111293 + MIR SINE MIR 45 189 -63 2634 68 0 0 chrX 11488675 11488986 -151110944 + AluY SINE Alu 1 311 0 260 286 10 41 chrX 11489046 11489109 -151110821 + MIR SINE MIR 44 104 -104 662 191 150 116 chrX 11489109 11489548 -151110382 + LTR16A1 LTR ERVL 4 457 0 260 286 10 41 chrX 11489548 11489582 -151110348 + MIR SINE MIR 104 138 -70 2256 158 64 52 chrX 11489823 11490304 -151109626 + LTR22B LTR ERVK 1 487 -5 560 189 28 0 chrX 11490326 11490432 -151109498 - Tigger5 DNA MER2_type 0 2323 2215 388 162 67 18 chrX 11490432 11490587 -151109343 - L1MA9 LINE L1 -52 6137 5997 * 1051 166 29 62 chrX 11490547 11490788 -151109142 + L1MA9 LINE L1 5800 6032 -280 233 296 70 0 chrX 11492218 11492312 -151107618 - MER5B DNA MER1_type -78 111 2 689 170 152 6 chrX 11492327 11492492 -151107438 + MER5A DNA MER1_type 1 189 0 190 305 42 21 chrX 11492595 11492690 -151107240 - MIR SINE MIR -78 130 34 32 67 0 0 chrX 11493080 11493140 -151106790 + AT_rich Low_complexity Low_complexity 1 60 0 904 139 22 11 chrX 11493221 11493401 -151106529 - L1MA8 LINE L1 -2 6289 6108 800 172 0 15 chrX 11493402 11493536 -151106394 + FLAM_C SINE Alu 1 132 -11 2585 188 18 10 chrX 11493565 11494080 -151105850 - L1MB5 LINE L1 -6 6168 5650 3535 159 79 20 chrX 11495283 11495970 -151103960 + LTR8A LTR ERV1 1 727 0 2295 161 57 163 chrX 11496074 11496396 -151103534 + LTR8A LTR ERV1 1 356 -371 851 163 0 15 chrX 11496396 11496531 -151103399 - FLAM_C SINE Alu 0 133 1 2295 161 57 163 chrX 11496531 11497018 -151102912 + LTR8A LTR ERV1 356 724 -3 1675 221 53 18 chrX 11497103 11497537 -151102393 - L1ME1 LINE L1 -5 6161 5713 22 0 0 0 chrX 11497939 11497961 -151101969 + AT_rich Low_complexity Low_complexity 1 22 0 2105 135 50 19 chrX 11498016 11498378 -151101552 - THE1C LTR MaLR -2 373 1 2479 82 3 39 chrX 11498378 11498686 -151101244 - THE1C-int LTR MaLR 0 1580 1285 2324 89 7 10 chrX 11498686 11498988 -151100942 - AluSp SINE Alu -12 301 1 2479 82 3 39 chrX 11498988 11499035 -151100895 - THE1C-int LTR MaLR -295 1285 1238 369 0 0 0 chrX 11499036 11499077 -151100853 + (ATG)n Simple_repeat Simple_repeat 2 42 0 1587 136 32 51 chrX 11499112 11499573 -151100357 + MLT1D LTR MaLR 1 501 -4 23 0 0 0 chrX 11500904 11500927 -151099003 + AT_rich Low_complexity Low_complexity 1 23 0 837 212 30 35 chrX 11500975 11501206 -151098724 - L1MB8 LINE L1 -14 6164 5935 458 195 23 8 chrX 11501207 11501335 -151098595 + C-rich Low_complexity Low_complexity 4 133 0 515 215 17 17 chrX 11501374 11501546 -151098384 + C-rich Low_complexity Low_complexity 3 174 0 8131 87 2 0 chrX 11501702 11503536 -151096394 + L1PA8 LINE L1 4323 6166 -6 776 112 0 0 chrX 11503536 11503634 -151096296 + AluSg/x SINE Alu 193 290 -19 1974 129 32 44 chrX 11503780 11504121 -151095809 + MER44D DNA MER2_type 3 609 0 640 185 130 37 chrX 11504417 11504579 -151095351 - MER5A DNA MER1_type -11 178 2 943 206 41 41 chrX 11504628 11504846 -151095084 + MER20 DNA MER1_type 1 218 -1 263 178 0 0 chrX 11505012 11505057 -151094873 + Charlie8 DNA MER1_type 1381 1425 -992 195 369 136 10 chrX 11505061 11505164 -151094766 - MIR3 SINE MIR -48 160 45 1112 70 21 0 chrX 11505657 11505800 -151094130 + L1PA7 LINE L1 6009 6154 0 244 263 0 0 chrX 11505800 11505870 -151094060 + A-rich Low_complexity Low_complexity 8 80 0 1144 206 57 0 chrX 11505902 11506111 -151093819 + MER58A DNA MER1_type 1 221 -3 268 163 20 0 chrX 11506127 11506176 -151093754 + MER116 DNA Mariner 1 50 -30 23 0 0 0 chrX 11506329 11506352 -151093578 + AT_rich Low_complexity Low_complexity 1 23 0 471 288 146 5 chrX 11506734 11506939 -151092991 + MIR SINE MIR 19 252 -10 665 167 0 0 chrX 11507087 11507183 -151092747 + AluSg/x SINE Alu 177 272 -38 214 230 37 118 chrX 11508005 11508140 -151091790 + L2 LINE L2 2832 2955 -358 3249 157 23 14 chrX 11508167 11508723 -151091207 - L1MB7 LINE L1 -11 6173 5613 3583 135 24 24 chrX 11508723 11509307 -151090623 + MER41B LTR ERV1 4 587 -48 1636 181 21 9 chrX 11509311 11509637 -151090293 - L1MB7 LINE L1 -565 5619 5290 359 317 0 25 chrX 11509670 11509790 -151090140 + L2 LINE L2 3197 3313 0 203 0 37 0 chrX 11510272 11510299 -151089631 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 475 264 289 0 chrX 11511456 11511657 -151088273 + MIR SINE MIR 2 260 -2 459 249 102 69 chrX 11511670 11511975 -151087955 + L1ME4a LINE L1 5790 6104 -17 1891 149 70 24 chrX 11512675 11513045 -151086885 + LTR48 LTR ERV1 401 787 0 835 134 0 24 chrX 11513358 11513485 -151086445 - FLAM_C SINE Alu -11 132 9 487 320 11 17 chrX 11513824 11514002 -151085928 + MER5A DNA MER1_type 7 183 -6 1111 185 6 35 chrX 11514052 11514375 -151085555 - MLT1A1 LTR MaLR 0 365 1 639 182 51 132 chrX 11514506 11514831 -151085099 + L1ME1 LINE L1 5177 5472 -694 856 155 0 0 chrX 11514853 11514982 -151084948 - FRAM SINE Alu -23 153 25 2861 200 59 15 chrX 11515024 11515690 -151084240 + L1ME1 LINE L1 5467 6161 -5 2299 99 0 19 chrX 11515852 11516164 -151083766 + AluSg1 SINE Alu 1 306 -3 209 195 0 0 chrX 11516607 11516648 -151083282 + A-rich Low_complexity Low_complexity 2 42 0 229 293 50 20 chrX 11517757 11517856 -151082074 + L1ME LINE L1 5572 5673 -489 287 296 57 28 chrX 11518093 11518269 -151081661 - L1MC/D LINE L1 -762 5597 5417 1565 170 0 8 chrX 11518272 11518537 -151081393 - AluJb SINE Alu -11 301 39 3122 150 46 28 chrX 11518853 11519281 -151080649 + L1MB4 LINE L1 5604 6046 -134 1795 168 34 0 chrX 11519281 11519578 -151080352 - AluSx SINE Alu -5 307 1 3122 150 46 28 chrX 11519578 11519714 -151080216 + L1MB4 LINE L1 6046 6178 -2 440 254 137 50 chrX 11519808 11520305 -151079625 - L1MC/D LINE L1 -2685 3461 2922 1659 141 160 10 chrX 11520636 11520948 -151078982 + MSTA LTR MaLR 1 359 -69 657 86 0 0 chrX 11520948 11521041 -151078889 - L1M3 LINE L1 -500 5680 5588 2430 93 0 0 chrX 11521067 11521377 -151078553 - AluSg SINE Alu 0 310 1 818 129 0 168 chrX 11521685 11521887 -151078043 + MER45A DNA AcHobo 1 168 -10 381 297 45 0 chrX 11524048 11524159 -151075771 + L2 LINE L2 3197 3312 -1 1140 138 40 62 chrX 11524990 11525214 -151074716 + MER20 DNA MER1_type 1 219 0 1437 149 71 22 chrX 11525572 11525873 -151074057 + AluSg1 SINE Alu 1 314 0 337 340 0 9 chrX 11527572 11527678 -151072252 + G-rich Low_complexity Low_complexity 1 105 0 297 326 0 63 chrX 11527609 11527815 -151072115 + GA-rich Low_complexity Low_complexity 1 192 0 * 186 191 0 0 chrX 11527866 11527908 -151072022 + G-rich Low_complexity Low_complexity 1 42 0 248 424 0 0 chrX 11527930 11528029 -151071901 + G-rich Low_complexity Low_complexity 1 99 0 1614 45 10 0 chrX 11528216 11528418 -151071512 + L1PA6 LINE L1 5324 5527 -627 5227 62 2 0 chrX 11528571 11529184 -151070746 + L1PA6 LINE L1 5536 6149 -5 1812 130 27 57 chrX 11530023 11530113 -151069817 + MER44D DNA MER2_type 16 107 -2384 1855 146 10 7 chrX 11530113 11530415 -151069515 + AluSx SINE Alu 1 303 -9 1812 130 27 57 chrX 11530415 11530655 -151069275 + MER44D DNA MER2_type 107 606 -3 788 181 0 8 chrX 11531593 11531726 -151068204 - FLAM_C SINE Alu -9 134 3 212 175 0 25 chrX 11532081 11532121 -151067809 + (CA)n Simple_repeat Simple_repeat 2 40 0 475 198 30 0 chrX 11532873 11532974 -151066956 - LTR37B LTR ERV1 0 468 365 198 0 0 0 chrX 11532990 11533012 -151066918 + (CA)n Simple_repeat Simple_repeat 2 23 0 365 200 35 0 chrX 11533014 11533099 -151066831 - LTR37B LTR ERV1 -157 311 224 227 73 73 0 chrX 11533112 11533167 -151066763 + T-rich Low_complexity Low_complexity 2 60 0 669 213 25 45 chrX 11533223 11533425 -151066505 - LTR37B LTR ERV1 -267 201 4 8157 28 0 0 chrX 11534174 11535606 -151064324 - L1PA3 LINE L1 0 6155 4724 1938 148 7 0 chrX 11535817 11536119 -151063811 - AluSx SINE Alu 0 308 5 292 211 211 0 chrX 11536154 11536263 -151063667 - L1ME4a LINE L1 -12 6109 5978 230 339 26 32 chrX 11536443 11536632 -151063298 - L1ME LINE L1 -356 5765 5578 2333 44 0 0 chrX 11537645 11537915 -151062015 - AluY SINE Alu -2 309 40 219 167 0 0 chrX 11537915 11537957 -151061973 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 23 0 0 0 chrX 11538680 11538703 -151061227 + GC_rich Low_complexity Low_complexity 1 23 0 249 158 0 0 chrX 11539395 11539433 -151060497 - MER5B DNA MER1_type -135 43 6 450 249 148 47 chrX 11540059 11540228 -151059702 + MER5A DNA MER1_type 4 189 0 434 226 83 15 chrX 11540232 11540365 -151059565 - MER103 DNA DNA -20 146 5 484 251 43 59 chrX 11540390 11540442 -151059488 - L1ME3A LINE L1 -1 6169 6118 2914 202 8 8 chrX 11540442 11540961 -151058969 + LTR40a LTR ERVL 1 519 0 484 251 43 59 chrX 11540961 11541095 -151058835 - L1ME3A LINE L1 -52 6118 5986 684 261 101 10 chrX 11541160 11541367 -151058563 - MIR SINE MIR -6 256 31 2301 89 0 35 chrX 11541368 11541683 -151058247 - AluSq SINE Alu -9 304 1 385 129 14 43 chrX 11542725 11542795 -151057135 - MLT1G LTR MaLR -300 290 223 1962 152 0 13 chrX 11542953 11543268 -151056662 - AluSx SINE Alu -1 311 1 798 273 152 33 chrX 11543627 11544056 -151055874 - MLT1H1 LTR MaLR -8 547 68 2377 86 0 7 chrX 11544470 11544774 -151055156 - AluSg SINE Alu -8 302 1 1356 256 39 58 chrX 11545191 11545825 -151054105 + L1MEc LINE L1 1734 2355 -4041 1042 207 64 107 chrX 11546097 11546584 -151053346 - LTR37B LTR ERV1 0 468 3 578 296 15 35 chrX 11546659 11546862 -151053068 - MIR SINE MIR -36 226 28 23 33 0 0 chrX 11546983 11547013 -151052917 + AT_rich Low_complexity Low_complexity 1 30 0 428 258 157 25 chrX 11547516 11547675 -151052255 - MER5A DNA MER1_type -1 188 9 486 172 20 10 chrX 11547696 11547795 -151052135 - MER5B DNA MER1_type -6 172 73 6206 112 8 10 chrX 11547994 11548899 -151051031 + MER4D LTR ERV1 1 903 0 234 250 83 0 chrX 11548969 11549041 -151050889 + MER97c DNA MER1_type? 27 104 -986 390 161 0 0 chrX 11549057 11549119 -151050811 + MER89 LTR ERV1 12 73 -486 * 1864 175 86 3 chrX 11549094 11549442 -151050488 + MER89 LTR ERV1 183 559 0 300 225 56 0 chrX 11549442 11549521 -151050409 + MER97c DNA MER1_type? 89 172 -918 2227 113 7 0 chrX 11550711 11551011 -151048919 + AluSx SINE Alu 1 302 -10 265 135 0 0 chrX 11551045 11551082 -151048848 - 5S rRNA rRNA -82 39 3 735 132 0 73 chrX 11551201 11551337 -151048593 + LTR8 LTR ERV1 1 126 -565 1571 178 34 14 chrX 11552030 11552323 -151047607 + MER58B DNA MER1_type 43 341 0 324 0 0 0 chrX 11553500 11553536 -151046394 + (CA)n Simple_repeat Simple_repeat 2 37 0 500 262 58 16 chrX 11553705 11553896 -151046034 - MIR SINE MIR -61 201 3 998 137 0 46 chrX 11554311 11554486 -151045444 + MER20 DNA MER1_type 1 167 -52 1940 171 119 30 chrX 11554782 11555243 -151044687 + MLT1D LTR MaLR 1 502 -3 976 237 88 48 chrX 11556862 11557059 -151042871 + L1ME3A LINE L1 5462 5650 -520 2218 164 0 0 chrX 11557059 11557406 -151042524 + MER7A DNA MER2_type 2 346 0 976 237 88 48 chrX 11557406 11557605 -151042325 + L1ME3A LINE L1 5650 5874 -296 314 139 0 76 chrX 11557608 11557687 -151042243 + L1ME3A LINE L1 6027 6099 -71 850 263 0 0 chrX 11557838 11558013 -151041917 + MER58A DNA MER1_type 1 175 -49 234 204 20 0 chrX 11558937 11558986 -151040944 + CT-rich Low_complexity Low_complexity 4 53 0 1962 169 100 3 chrX 11559190 11559539 -151040391 - MER21B LTR ERV1 -480 383 1 355 300 91 0 chrX 11560297 11560407 -151039523 + MIR SINE MIR 88 207 -55 313 261 60 92 chrX 11560787 11560971 -151038959 - MIR3 SINE MIR -24 184 7 25 0 0 0 chrX 11561003 11561028 -151038902 + AT_rich Low_complexity Low_complexity 1 25 0 341 149 15 0 chrX 11561557 11561624 -151038306 + GA-rich Low_complexity Low_complexity 1 68 0 373 311 128 13 chrX 11563025 11563260 -151036670 - MIR SINE MIR 0 262 1 289 311 83 8 chrX 11563377 11563509 -151036421 + L2 LINE L2 3127 3268 -4 2314 99 6 10 chrX 11564206 11564519 -151035411 - AluSx SINE Alu 0 312 1 1656 204 29 112 chrX 11565848 11565864 -151034066 + MLT1G LTR MaLR 10 26 -564 2135 124 176 0 chrX 11565864 11566228 -151033702 - MSTA LTR MaLR 0 428 1 1656 204 29 112 chrX 11566228 11566755 -151033175 + MLT1G LTR MaLR 26 508 -82 1097 245 81 117 chrX 11566822 11567184 -151032746 - HAL1 LINE L1 -763 1744 1371 474 75 38 0 chrX 11567184 11567264 -151032666 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1097 245 81 117 chrX 11567264 11567407 -151032523 - HAL1 LINE L1 -1136 1371 1224 1614 164 32 48 chrX 11567407 11567719 -151032211 - AluJb SINE Alu -5 307 1 1097 245 81 117 chrX 11567719 11568308 -151031622 - HAL1 LINE L1 -1283 1224 688 578 289 58 69 chrX 11568363 11568709 -151031221 - MLT1I LTR MaLR -26 383 42 283 324 52 15 chrX 11568776 11568912 -151031018 - HAL1 LINE L1 -2366 141 1 360 59 0 0 chrX 11570115 11570166 -151029764 + (CA)n Simple_repeat Simple_repeat 2 52 0 489 271 39 86 chrX 11570225 11570480 -151029450 + HAL1 LINE L1 3 245 -2262 2745 139 36 72 chrX 11571468 11571970 -151027960 + MLT2B2 LTR ERVL 2 485 -30 2752 124 26 2 chrX 11572063 11572481 -151027449 - MSTC LTR MaLR 0 428 1 729 102 0 86 chrX 11572640 11572768 -151027162 + FLAM_C SINE Alu 27 143 0 696 233 141 0 chrX 11573024 11573187 -151026743 + MER5A DNA MER1_type 4 189 0 1337 254 147 43 chrX 11573393 11573583 -151026347 - MLT1G1 LTR MaLR 0 595 426 2719 83 3 0 chrX 11573583 11573933 -151025997 + THE1A LTR MaLR 1 351 -4 1337 254 147 43 chrX 11573933 11574281 -151025649 - MLT1G1 LTR MaLR -169 426 1 2114 120 0 43 chrX 11574389 11574715 -151025215 + AluSx SINE Alu 1 312 0 535 194 166 11 chrX 11574920 11575071 -151024859 - MER5A DNA MER1_type -7 182 5 557 258 5 58 chrX 11575999 11576189 -151023741 + MER5A DNA MER1_type 7 186 -3 888 183 21 42 chrX 11577386 11577577 -151022353 + MER58A DNA MER1_type 36 222 -2 360 259 58 29 chrX 11577723 11577862 -151022068 + L1ME4a LINE L1 5957 6099 -22 258 81 0 0 chrX 11577862 11577899 -151022031 + (CA)n Simple_repeat Simple_repeat 2 38 0 295 230 163 46 chrX 11578240 11578436 -151021494 - MLT1K LTR MaLR 0 588 370 477 157 0 0 chrX 11578575 11578645 -151021285 + AluSp SINE Alu 134 203 -110 17221 136 21 100 chrX 11578654 11582309 -151017621 + L1P LINE L1 12 3375 -2771 345 24 0 0 chrX 11582309 11582351 -151017579 + (CA)n Simple_repeat Simple_repeat 2 43 0 17221 136 21 100 chrX 11582351 11582374 -151017556 + L1P LINE L1 3375 3398 -2748 1880 168 27 3 chrX 11582373 11582701 -151017229 + L1P LINE L1 4072 4407 -1739 * 526 227 8 70 chrX 11583267 11583330 -151016600 + MLT1E3 LTR MaLR 505 558 -66 1768 176 10 6 chrX 11583330 11583642 -151016288 + AluSq SINE Alu 1 313 0 526 227 8 70 chrX 11583642 11583706 -151016224 + MLT1E3 LTR MaLR 558 624 0 286 179 265 8 chrX 11583765 11583882 -151016048 - MER5C DNA MER1_type -6 318 172 406 217 181 12 chrX 11583905 11584071 -151015859 - MER5C DNA MER1_type -92 232 39 383 324 51 23 chrX 11584121 11584337 -151015593 - MIR SINE MIR 0 262 41 337 313 21 21 chrX 11584751 11584895 -151015035 - MER5B DNA MER1_type -24 154 11 732 234 0 0 chrX 11586316 11586487 -151013443 + G-rich Low_complexity Low_complexity 1 171 0 412 210 16 24 chrX 11586507 11586631 -151013299 + G-rich Low_complexity Low_complexity 1 123 0 699 112 0 0 chrX 11586647 11586754 -151013176 + (TA)n Simple_repeat Simple_repeat 2 108 0 2086 210 46 44 chrX 11586754 11587258 -151012672 - MLT2B3 LTR ERVL -48 506 2 234 35 0 0 chrX 11587258 11587287 -151012643 - MLT1F LTR MaLR -513 29 1 1745 119 4 15 chrX 11588637 11588897 -151011033 + AluY SINE Alu 1 257 -54 212 209 14 40 chrX 11588907 11589055 -151010875 + C-rich Low_complexity Low_complexity 4 147 0 443 274 153 6 chrX 11589930 11590087 -151009843 + MER5A DNA MER1_type 10 189 0 219 286 63 48 chrX 11590092 11590218 -151009712 + MIR SINE MIR 19 146 -62 703 176 33 38 chrX 11590228 11590534 -151009396 - MLT1A1 LTR MaLR 0 374 24 300 306 16 16 chrX 11590536 11590660 -151009270 + C-rich Low_complexity Low_complexity 4 127 0 234 217 0 0 chrX 11590679 11590748 -151009182 + C-rich Low_complexity Low_complexity 1 69 0 340 306 19 64 chrX 11591330 11591487 -151008443 + L2 LINE L2 3116 3265 -7 582 282 72 0 chrX 11591554 11591735 -151008195 + MIR SINE MIR 3 196 -66 23 33 0 0 chrX 11591859 11591889 -151008041 + AT_rich Low_complexity Low_complexity 1 30 0 2356 102 10 0 chrX 11592231 11592535 -151007395 - AluSx SINE Alu -5 307 1 1141 151 55 83 chrX 11593392 11593704 -151006226 - MER33 DNA MER1_type -1 323 21 1585 159 0 0 chrX 11594786 11595018 -151004912 - AluJb SINE Alu -80 232 1 2132 121 3 3 chrX 11595477 11595782 -151004148 + AluSx SINE Alu 1 305 -7 405 297 208 26 chrX 11596115 11596505 -151003425 - L2 LINE L2 -1 3312 2852 22 0 0 0 chrX 11596637 11596659 -151003271 + AT_rich Low_complexity Low_complexity 1 22 0 213 278 89 56 chrX 11596837 11596927 -151003003 - MIR SINE MIR -118 144 52 1835 212 91 24 chrX 11597233 11597363 -151002567 + MLT1D LTR MaLR 13 133 -372 2104 138 71 59 chrX 11597363 11597426 -151002504 - MSTA LTR MaLR 0 428 367 2294 116 0 0 chrX 11597426 11597737 -151002193 - AluSx SINE Alu -1 311 1 2104 138 71 59 chrX 11597737 11598094 -151001836 - MSTA LTR MaLR -61 367 3 1835 212 91 24 chrX 11598094 11598425 -151001505 + MLT1D LTR MaLR 133 505 0 288 270 40 8 chrX 11598615 11598741 -151001189 + L1ME4a LINE L1 5969 6098 -23 261 0 0 0 chrX 11600108 11600137 -150999793 + (TG)n Simple_repeat Simple_repeat 1 29 0 3267 177 69 38 chrX 11600182 11600574 -150999356 - MER69 DNA AcHobo -1 2525 2147 2356 94 3 0 chrX 11600574 11600883 -150999047 + AluSq SINE Alu 1 310 -3 3267 177 69 38 chrX 11600883 11601342 -150998588 - MER69 DNA AcHobo -379 2147 1648 1853 230 68 22 chrX 11601382 11601899 -150998031 - MER69 DNA AcHobo -1832 694 92 1944 132 0 40 chrX 11602018 11602322 -150997608 - AluJo SINE Alu -20 292 1 212 236 91 0 chrX 11604196 11604251 -150995679 + MIR SINE MIR 203 262 0 1998 156 0 10 chrX 11604554 11604861 -150995069 - AluJb SINE Alu -8 304 1 312 333 81 10 chrX 11605203 11605401 -150994529 + L2 LINE L2 1820 2031 -1283 243 133 33 17 chrX 11606053 11606113 -150993817 + CT-rich Low_complexity Low_complexity 5 65 0 200 315 120 0 chrX 11606341 11606433 -150993497 + L2 LINE L2 3176 3278 -35 213 65 0 0 chrX 11606628 11606659 -150993271 + (T)n Simple_repeat Simple_repeat 1 31 0 344 267 136 48 chrX 11607151 11607357 -150992573 + MIR SINE MIR 13 236 -26 1615 221 53 42 chrX 11607541 11607997 -150991933 - MLT1C LTR MaLR -4 463 3 1181 265 65 9 chrX 11608055 11608380 -150991550 + LTR16A LTR ERVL 108 450 0 328 132 0 0 chrX 11609436 11609489 -150990441 - L2 LINE L2 0 3313 3261 1244 111 0 0 chrX 11609504 11609676 -150990254 + MLT1C LTR MaLR 1 172 -295 784 104 9 0 chrX 11609676 11609782 -150990148 + MLT1C LTR MaLR 361 467 0 339 197 0 0 chrX 11610434 11610495 -150989435 + MER116 DNA Mariner 6 66 -14 319 262 93 29 chrX 11610587 11610759 -150989171 + L1ME4a LINE L1 5936 6118 -3 2494 65 3 7 chrX 11610767 11611076 -150988854 + AluY SINE Alu 2 309 -2 230 339 26 32 chrX 11612089 11612278 -150987652 + L1ME LINE L1 5578 5765 -356 292 211 211 0 chrX 11612458 11612567 -150987363 + L1ME4a LINE L1 5978 6109 -12 1964 144 7 0 chrX 11612602 11612904 -150987026 + AluSx SINE Alu 5 308 0 2985 188 73 9 chrX 11613625 11614158 -150985772 + MLT1F1 LTR MaLR 1 567 0 2132 116 85 25 chrX 11616588 11616942 -150982988 - THE1C LTR MaLR 0 375 1 243 266 16 0 chrX 11617319 11617383 -150982547 - MER3 DNA MER1_type -144 65 1 226 311 122 0 chrX 11617599 11617689 -150982241 - L2 LINE L2 -8 3264 3164 2228 118 0 3 chrX 11617710 11618016 -150981914 + AluSx SINE Alu 1 305 -7 794 247 128 43 chrX 11618128 11618388 -150981542 + LTR16A LTR ERVL 51 325 -125 23 0 0 0 chrX 11619012 11619035 -150980895 + AT_rich Low_complexity Low_complexity 1 23 0 710 145 60 0 chrX 11619289 11619406 -150980524 + L1MC/D LINE L1 5691 5814 -519 222 226 0 75 chrX 11619555 11619608 -150980322 - L2 LINE L2 -10 3262 3214 599 217 143 0 chrX 11620765 11620920 -150979010 + MER5A DNA MER1_type 4 184 -5 791 219 15 56 chrX 11620932 11621128 -150978802 - MER5A DNA MER1_type 0 189 2 276 293 76 19 chrX 11621181 11621332 -150978598 + MIR SINE MIR 77 236 -26 467 215 130 107 chrX 11621332 11621509 -150978421 + MER5A DNA MER1_type 3 183 -6 21 0 0 0 chrX 11621963 11621984 -150977946 + AT_rich Low_complexity Low_complexity 1 21 0 285 330 70 0 chrX 11622716 11622816 -150977114 - MIR SINE MIR -64 144 38 526 214 22 112 chrX 11623166 11623402 -150976528 + L1ME2 LINE L1 5940 6162 -4 2217 113 7 0 chrX 11623935 11624236 -150975694 + AluSx SINE Alu 1 303 -9 263 135 0 0 chrX 11624270 11624307 -150975623 - 5S rRNA rRNA -82 39 3 3619 146 20 77 chrX 11624426 11625158 -150974772 + LTR8 LTR ERV1 1 691 0 1595 127 119 11 chrX 11625494 11625762 -150974168 + AluJb SINE Alu 1 297 -15 5322 195 88 26 chrX 11625887 11626212 -150973718 - Charlie1 DNA MER1_type 0 2761 2458 2526 141 111 77 chrX 11626212 11626756 -150973174 - LTR49 LTR ERV1 0 595 28 1945 151 0 0 chrX 11626756 11627178 -150972752 + AluSx SINE Alu 1 422 0 2526 141 111 77 chrX 11627178 11627207 -150972723 - LTR49 LTR ERV1 -567 28 1 5322 195 88 26 chrX 11627207 11628251 -150971679 - Charlie1 DNA MER1_type -303 2458 1 560 273 128 65 chrX 11628412 11629075 -150970855 - L2 LINE L2 -71 3242 2538 427 191 24 16 chrX 11629219 11629345 -150970585 + G-rich Low_complexity Low_complexity 5 131 0 337 315 76 22 chrX 11629668 11629852 -150970078 - MIR SINE MIR -19 243 50 2924 133 39 79 chrX 11630206 11630644 -150969286 + L1MB5 LINE L1 5604 6013 -161 2394 106 0 3 chrX 11630644 11630955 -150968975 + AluSx SINE Alu 1 310 -2 2924 133 39 79 chrX 11630955 11631111 -150968819 + L1MB5 LINE L1 6013 6174 0 1010 151 34 53 chrX 11631537 11631667 -150968263 + MER20 DNA MER1_type 16 142 -77 3912 132 52 59 chrX 11631667 11632363 -150967567 + LTR8 LTR ERV1 1 691 0 1010 151 34 53 chrX 11632363 11632438 -150967492 + MER20 DNA MER1_type 142 217 -2 27 49 0 0 chrX 11632873 11632914 -150967016 + AT_rich Low_complexity Low_complexity 1 41 0 2282 81 27 0 chrX 11633040 11633338 -150966592 - AluSx SINE Alu -2 310 5 180 0 0 0 chrX 11634254 11634274 -150965656 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1139 171 14 5 chrX 11634353 11634563 -150965367 - L1MD3 LINE L1 -79 7916 7705 264 30 0 0 chrX 11634678 11634711 -150965219 + (A)n Simple_repeat Simple_repeat 1 33 0 1921 269 39 45 chrX 11635425 11636021 -150963909 + MLT1E LTR MaLR 2 593 0 220 287 221 41 chrX 11637421 11637543 -150962387 + MIR3 SINE MIR 34 177 -31 323 171 184 0 chrX 11637941 11638017 -150961913 - MER53 DNA DNA -71 118 29 524 325 106 46 chrX 11638146 11638301 -150961629 + L2 LINE L2 2155 2299 -1015 2131 116 3 26 chrX 11638301 11638604 -150961326 - AluSx SINE Alu -12 300 5 524 325 106 46 chrX 11638604 11638987 -150960943 + L2 LINE L2 2299 2725 -589 1115 148 38 0 chrX 11639083 11639266 -150960664 + MER20 DNA MER1_type 5 194 -25 641 76 11 0 chrX 11640189 11640281 -150959649 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 36 23 0 0 chrX 11640283 11640326 -150959604 + AT_rich Low_complexity Low_complexity 1 43 0 1178 153 30 25 chrX 11640326 11640528 -150959402 - L1PA16 LINE L1 -9 6157 5955 621 232 43 81 chrX 11640687 11640872 -150959058 + MER5B DNA MER1_type 1 178 0 1215 146 92 29 chrX 11640880 11641086 -150958844 - MER20 DNA MER1_type 0 219 1 207 0 0 0 chrX 11641311 11641334 -150958596 + (TTA)n Simple_repeat Simple_repeat 2 24 0 606 196 0 0 chrX 11641334 11641431 -150958499 - AluJ SINE Alu -29 283 187 2196 118 54 33 chrX 11641431 11641979 -150957951 + MER51A LTR ERV1 1 634 0 1270 128 0 16 chrX 11641982 11642169 -150957761 - AluJ SINE Alu -125 187 4 2607 134 0 0 chrX 11642205 11642570 -150957360 - MER47A DNA MER2_type -1 365 1 892 151 41 101 chrX 11642724 11642942 -150956988 - MER3 DNA MER1_type 0 209 5 372 319 57 72 chrX 11643054 11643458 -150956472 + L2 LINE L2 2828 3225 -47 289 233 33 0 chrX 11643964 11644024 -150955906 + L2 LINE L2 3205 3266 -6 1750 238 70 39 chrX 11644124 11644611 -150955319 - MLT1D LTR MaLR -3 502 1 708 316 78 23 chrX 11644753 11645329 -150954601 - L1ME4a LINE L1 0 6121 5514 1619 201 27 84 chrX 11645357 11645771 -150954159 + MLT1B LTR MaLR 1 390 0 253 340 70 0 chrX 11646698 11646798 -150953132 - MIR SINE MIR -110 152 46 1224 301 141 45 chrX 11647108 11648077 -150951853 + L2 LINE L2 2009 3067 -246 515 273 36 46 chrX 11648218 11648412 -150951518 + MLT1J2 LTR MaLR 256 447 -3 378 335 101 22 chrX 11648474 11648701 -150951229 + L2 LINE L2 3027 3271 -1 1169 187 19 0 chrX 11650105 11650319 -150949611 + MER20 DNA MER1_type 1 218 -1 40 49 0 0 chrX 11650750 11650811 -150949119 + AT_rich Low_complexity Low_complexity 1 61 0 245 336 56 28 chrX 11651398 11651505 -150948425 + MER5B DNA MER1_type 17 126 -52 243 0 0 0 chrX 11651524 11651551 -150948379 + (CA)n Simple_repeat Simple_repeat 1 27 0 394 253 44 63 chrX 11651829 11651987 -150947943 + MIR3 SINE MIR 33 187 -21 304 158 18 0 chrX 11652195 11652252 -150947678 - MER58 DNA MER1_type -2 2418 2361 1757 137 7 28 chrX 11652316 11652600 -150947330 + AluJo SINE Alu 1 278 -34 371 188 0 0 chrX 11652815 11652884 -150947046 - MER81 DNA DNA -5 109 41 2002 139 4 0 chrX 11653793 11654073 -150945857 + AluSx SINE Alu 1 281 -31 505 95 0 0 chrX 11654113 11654176 -150945754 + Alu SINE Alu 224 286 -26 25 31 0 0 chrX 11654177 11654209 -150945721 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chrX 11654345 11654367 -150945563 + AT_rich Low_complexity Low_complexity 1 22 0 514 246 112 49 chrX 11654654 11654959 -150944971 + LTR50 LTR ERVL 471 794 -1 39 0 0 0 chrX 11655675 11655714 -150944216 + AT_rich Low_complexity Low_complexity 1 39 0 1496 139 36 7 chrX 11656136 11656410 -150943520 + L1MA5 LINE L1 6017 6298 -2 856 210 0 27 chrX 11656573 11656759 -150943171 - MLT1F1 LTR MaLR -2 565 385 695 203 57 18 chrX 11656761 11656988 -150942942 - L1 LINE L1 -1724 4422 4187 226 243 57 29 chrX 11657055 11657125 -150942805 + MIR SINE MIR 76 147 -61 2003 120 7 7 chrX 11659352 11659651 -150940279 + AluJb SINE Alu 1 299 -13 1010 204 51 41 chrX 11659949 11660263 -150939667 + L1ME3A LINE L1 5852 6168 -2 1582 251 33 4 chrX 11660988 11661467 -150938463 - Charlie4a DNA MER1_type -13 495 3 282 206 0 0 chrX 11661831 11661894 -150938036 + (TG)n Simple_repeat Simple_repeat 1 63 0 1736 148 8 11 chrX 11661912 11662175 -150937755 + AluSx SINE Alu 36 297 -15 633 323 71 39 chrX 11663665 11663832 -150936098 - MIR SINE MIR 0 262 83 888 251 124 27 chrX 11663832 11664203 -150935727 + MLT1I LTR MaLR 1 407 -2 633 323 71 39 chrX 11664203 11664289 -150935641 - MIR SINE MIR -179 83 1 283 362 83 23 chrX 11664725 11665018 -150934912 + L2 LINE L2 2712 3031 -241 803 262 23 19 chrX 11665337 11665593 -150934337 + MER41E LTR ERV1 226 482 -30 227 167 0 0 chrX 11665597 11665633 -150934297 + MER5B DNA MER1_type 120 155 -23 21 0 0 0 chrX 11665872 11665893 -150934037 + AT_rich Low_complexity Low_complexity 1 21 0 1144 128 44 5 chrX 11666173 11666377 -150933553 - MER4D LTR ERV1 -660 212 1 978 183 25 43 chrX 11667286 11667501 -150932429 + MLT1J2 LTR MaLR 3 213 -237 3901 168 15 115 chrX 11667501 11668555 -150931375 + LTR28 LTR ERV1 1 949 -71 558 225 65 75 chrX 11668682 11668882 -150931048 + MLT1J2 LTR MaLR 243 444 -6 378 42 0 0 chrX 11669913 11669961 -150929969 + (CA)n Simple_repeat Simple_repeat 2 49 0 236 253 212 20 chrX 11670102 11670201 -150929729 + MER5A DNA MER1_type 49 166 -23 * 480 218 18 36 chrX 11670121 11670231 -150929699 - MER5A DNA MER1_type -77 112 5 1263 210 93 51 chrX 11670258 11670471 -150929459 - MER39 LTR ERV1 0 681 478 2724 133 51 18 chrX 11670471 11670923 -150929007 + LTR24 LTR ERV1 1 467 0 1263 210 93 51 chrX 11670923 11671127 -150928803 - MER39 LTR ERV1 -203 478 266 385 296 148 6 chrX 11671375 11671537 -150928393 + MER5A DNA MER1_type 4 188 -1 1717 175 0 7 chrX 11671805 11672117 -150927813 - AluJo SINE Alu 0 310 1 351 346 103 48 chrX 11672484 11672912 -150927018 - L2 LINE L2 -1 3271 2868 318 50 0 0 chrX 11672912 11672952 -150926978 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 346 103 48 chrX 11672952 11673337 -150926593 - L2 LINE L2 -404 2868 2340 1144 208 60 7 chrX 11673397 11673681 -150926249 + L1MC4 LINE L1 7270 7568 -474 30 0 0 0 chrX 11673829 11673859 -150926071 + GC_rich Low_complexity Low_complexity 1 30 0 1903 153 0 10 chrX 11674180 11674488 -150925442 + AluJb SINE Alu 1 305 -7 597 316 135 51 chrX 11674666 11675169 -150924761 + HAL1b LINE L1 99 667 -681 2060 147 0 6 chrX 11675169 11675482 -150924448 - AluSx SINE Alu 0 312 2 597 316 135 51 chrX 11675482 11675608 -150924322 + HAL1b LINE L1 667 781 -567 30 59 0 0 chrX 11675615 11675666 -150924264 + AT_rich Low_complexity Low_complexity 1 51 0 748 207 29 76 chrX 11675707 11676021 -150923909 + L1MC4 LINE L1 7743 8041 -1 23 54 0 0 chrX 11676022 11676059 -150923871 + AT_rich Low_complexity Low_complexity 1 37 0 182 296 28 56 chrX 11676066 11676174 -150923756 - L2 LINE L2 -1407 1907 1803 1212 180 17 44 chrX 11676772 11677067 -150922863 + L1MA9 LINE L1 5990 6276 -36 377 264 75 88 chrX 11677276 11677412 -150922518 - L1ME4a LINE L1 -249 5872 5739 1488 125 0 9 chrX 11677412 11677628 -150922302 - AluSg/x SINE Alu -13 297 84 377 264 75 88 chrX 11677628 11677730 -150922200 - L1ME4a LINE L1 -382 5739 5637 30 27 0 0 chrX 11677786 11677823 -150922107 + AT_rich Low_complexity Low_complexity 1 37 0 502 313 108 0 chrX 11678283 11678459 -150921471 - MIR3 SINE MIR -11 197 3 1547 147 77 53 chrX 11679735 11680151 -150919779 + LTR37A LTR ERV1 1 426 0 2327 105 0 16 chrX 11680299 11680614 -150919316 - AluSx SINE Alu -2 310 1 655 136 19 10 chrX 11680849 11681012 -150918918 - MER20 DNA MER1_type 0 219 1 694 256 39 6 chrX 11681854 11682034 -150917896 - LTR16C LTR ERVL -3 488 303 607 224 84 0 chrX 11682016 11682159 -150917771 + MER58B DNA MER1_type 186 340 -1 * 244 344 10 0 chrX 11682494 11682590 -150917340 + MER117 DNA MER1_type 74 170 -27 2817 129 11 25 chrX 11682741 11683261 -150916669 - L1MC2 LINE L1 -115 6229 5717 4341 191 47 27 chrX 11683267 11685901 -150914029 - L1MCa LINE L1 -2697 3867 1092 2743 85 3 11 chrX 11685904 11686270 -150913660 - THE1B LTR MaLR -1 363 1 1272 270 89 62 chrX 11686302 11686979 -150912951 - MER21B LTR ERV1 -149 714 20 1942 163 3 3 chrX 11686982 11687283 -150912647 - AluJb SINE Alu -11 301 1 2289 233 40 34 chrX 11687302 11688009 -150911921 - L1MCa LINE L1 -4950 1095 385 1445 236 79 16 chrX 11688061 11688489 -150911441 - L1MCa LINE L1 -5936 490 36 1129 178 9 61 chrX 11689185 11689416 -150910514 + MER20 DNA MER1_type 1 219 0 317 260 123 13 chrX 11690018 11690172 -150909758 - L1ME4a LINE L1 -19 6102 5932 835 70 0 9 chrX 11690286 11690400 -150909530 - L1PB1 LINE L1 0 6151 6039 216 86 0 0 chrX 11690518 11690553 -150909377 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 11690926 11690957 -150908973 + AT_rich Low_complexity Low_complexity 1 31 0 2172 169 57 21 chrX 11690993 11691412 -150908518 - Tigger2a DNA MER2_type 0 434 1 257 75 25 0 chrX 11692623 11692663 -150907267 + (TG)n Simple_repeat Simple_repeat 2 42 0 189 340 0 0 chrX 11698265 11698318 -150901612 - L2 LINE L2 -696 2618 2566 1807 129 4 0 chrX 11700585 11700849 -150899081 + AluSx SINE Alu 6 270 -42 2342 81 7 0 chrX 11713872 11714168 -150885762 + AluY SINE Alu 1 298 -13 198 0 0 0 chrX 11714207 11714229 -150885701 + (TC)n Simple_repeat Simple_repeat 2 23 0 180 0 0 0 chrX 11714228 11714248 -150885682 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 4909 44 0 5 chrX 11714272 11714838 -150885092 - L1PA7 LINE L1 -6 6148 5586 299 50 0 0 chrX 11714838 11714878 -150885052 + L1P3 LINE L1 5424 5463 -691 1992 136 17 0 chrX 11717441 11717736 -150882194 - AluSx SINE Alu -12 300 1 967 180 0 12 chrX 11718419 11718580 -150881350 + AluJb SINE Alu 136 294 -18 1494 70 5 0 chrX 11719752 11719937 -150879993 - AluY SINE Alu -125 186 1 190 103 103 26 chrX 11720476 11720515 -150879415 + L2 LINE L2 3272 3313 0 300 291 94 17 chrX 11721153 11721270 -150878660 - L2 LINE L2 0 3313 3188 465 263 59 0 chrX 11721286 11721404 -150878526 - MER94 DNA DNA -8 126 2 21 71 0 0 chrX 11721497 11721539 -150878391 + AT_rich Low_complexity Low_complexity 1 42 0 192 354 163 6 chrX 11721693 11721871 -150878059 - L2 LINE L2 -401 2913 2708 259 368 0 23 chrX 11722442 11722529 -150877401 + MER91A DNA MER1_type 24 108 -88 1895 140 50 3 chrX 11722686 11723007 -150876923 - MER61A LTR ERV1 -7 336 1 225 0 0 0 chrX 11723821 11723846 -150876084 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2189 78 4 11 chrX 11723846 11724127 -150875803 - AluSx SINE Alu -33 279 1 1019 135 57 105 chrX 11724514 11724743 -150875187 + MER20 DNA MER1_type 1 218 -1 1858 114 59 114 chrX 11725016 11725155 -150874775 - L1MA9 LINE L1 0 6312 6167 300 53 0 0 chrX 11725155 11725193 -150874737 + (TG)n Simple_repeat Simple_repeat 1 38 0 1858 114 59 114 chrX 11725193 11725474 -150874456 - L1MA9 LINE L1 -145 6167 5915 1879 145 81 103 chrX 11725497 11726056 -150873874 - LTR49 LTR ERV1 -22 600 29 2187 114 10 3 chrX 11726063 11726371 -150873559 - L1PB3 LINE L1 0 6154 5845 415 170 32 0 chrX 11726372 11726466 -150873464 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 650 137 29 0 chrX 11726466 11726568 -150873362 - L1PB3 LINE L1 -600 5554 5450 685 184 0 0 chrX 11726568 11726677 -150873253 - FLAM_C SINE Alu -32 111 3 273 184 0 0 chrX 11726685 11726734 -150873196 - L1PB3 LINE L1 -1143 5003 4955 1084 124 94 113 chrX 11726768 11726888 -150873042 - L1MA9 LINE L1 -395 5917 5796 2181 127 0 0 chrX 11726888 11727180 -150872750 - AluSx SINE Alu -20 292 1 1084 124 94 113 chrX 11727180 11727324 -150872606 - L1MA9 LINE L1 -516 5796 5658 1922 193 62 7 chrX 11727325 11727730 -150872200 + L1MB4 LINE L1 4782 5208 -938 1119 182 57 0 chrX 11728314 11728523 -150871407 + L1MB4 LINE L1 5954 6174 -6 223 290 16 0 chrX 11728626 11728688 -150871242 - L2 LINE L2 -12 3260 3198 1248 273 11 67 chrX 11728698 11728743 -150871187 - LTR16B LTR ERVL -15 449 403 2051 138 0 25 chrX 11728743 11729061 -150870869 + AluJo SINE Alu 1 310 -2 1248 273 11 67 chrX 11729061 11729491 -150870439 - LTR16B LTR ERVL -61 403 1 317 269 168 27 chrX 11729499 11729648 -150870282 - MIR SINE MIR -70 192 23 1862 150 0 33 chrX 11730152 11730459 -150869471 - AluJb SINE Alu -15 297 1 247 265 0 71 chrX 11730638 11730736 -150869194 - L1ME LINE L1 -234 5887 5797 321 284 0 25 chrX 11730792 11730873 -150869057 - L2 LINE L2 0 3313 3235 1523 198 86 24 chrX 11730874 11731248 -150868682 + L1ME1 LINE L1 5724 6120 -46 423 140 168 47 chrX 11731179 11731286 -150868644 + L1MA10 LINE L1 6213 6332 -2 * 217 281 0 16 chrX 11731305 11731369 -150868561 - L2 LINE L2 -286 2986 2924 961 237 47 13 chrX 11731389 11731621 -150868309 - MIR SINE MIR -21 241 2 2445 69 3 0 chrX 11732036 11732339 -150867591 - AluY SINE Alu -7 304 1 281 290 65 0 chrX 11733658 11733765 -150866165 - MIR SINE MIR -65 143 30 379 241 128 23 chrX 11733878 11734011 -150865919 + MER103 DNA DNA 2 148 -18 1718 132 48 11 chrX 11734260 11734562 -150865368 - AluJo SINE Alu 0 316 5 983 295 68 3 chrX 11734683 11735005 -150864925 + MLT1I LTR MaLR 60 402 -7 292 177 0 32 chrX 11735246 11735308 -150864622 - L1MC4 LINE L1 -1333 6709 6650 2043 128 14 0 chrX 11735570 11735866 -150864064 + AluSx SINE Alu 1 300 -12 1854 157 0 10 chrX 11736981 11737280 -150862650 + AluJb SINE Alu 1 296 -16 1374 275 127 19 chrX 11737617 11738900 -150861030 - L1ME3 LINE L1 -333 5829 4357 2461 74 3 0 chrX 11738953 11739252 -150860678 - AluSp SINE Alu -13 300 1 709 177 0 26 chrX 11739601 11739714 -150860216 + FAM SINE Alu 48 157 -28 2379 86 6 13 chrX 11739714 11740028 -150859902 - AluSx SINE Alu 0 312 1 289 223 245 0 chrX 11741522 11741616 -150858314 + MER5C DNA MER1_type 8 124 -200 331 257 136 38 chrX 11741983 11742225 -150857705 - L1MC/D LINE L1 -732 5442 5291 328 263 8 25 chrX 11742200 11742318 -150857612 - L1MEd LINE L1 -5944 175 60 * 441 341 41 16 chrX 11743876 11744071 -150855859 + L1ME4a LINE L1 5479 5683 -438 1739 165 3 34 chrX 11744071 11744393 -150855537 + AluJb SINE Alu 1 312 0 441 341 41 16 chrX 11744393 11744443 -150855487 + L1ME4a LINE L1 5683 5730 -391 632 307 95 43 chrX 11744573 11744941 -150854989 + LTR16C LTR ERVL 97 483 -8 353 158 79 0 chrX 11744949 11745025 -150854905 + L1ME4a LINE L1 5737 5818 -303 * 1753 234 44 53 chrX 11744994 11745312 -150854618 + L1ME1 LINE L1 5604 5900 -266 2176 121 3 0 chrX 11745312 11745609 -150854321 - AluSx SINE Alu -14 298 1 1753 234 44 53 chrX 11745609 11745868 -150854062 + L1ME1 LINE L1 5900 6160 -6 296 238 74 16 chrX 11746029 11746151 -150853779 + L1ME4a LINE L1 5989 6117 -4 1077 155 0 11 chrX 11747839 11748020 -150851910 - FRAM SINE Alu 0 176 1 943 172 18 0 chrX 11748293 11748462 -150851468 - MER5B DNA MER1_type -6 172 1 948 201 17 0 chrX 11748482 11748656 -150851274 + MER58A DNA MER1_type 45 221 -3 469 183 9 9 chrX 11751773 11751888 -150848042 + CT-rich Low_complexity Low_complexity 2 116 0 195 42 0 0 chrX 11752914 11752938 -150846992 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 277 240 27 0 chrX 11753653 11753728 -150846202 - MER103 DNA DNA -82 84 8 303 325 127 33 chrX 11754204 11754536 -150845394 - L3b LINE CR1 -114 1469 1107 202 284 95 27 chrX 11754599 11754673 -150845257 - MER5A DNA MER1_type 0 189 111 2328 72 7 0 chrX 11804996 11805287 -150794643 - AluY SINE Alu -18 293 1 286 231 62 0 chrX 11805380 11805445 -150794485 + L2 LINE L2 3245 3313 0 791 172 14 0 chrX 11807412 11807557 -150792373 - L1MA9 LINE L1 -7 6305 6159 661 225 6 6 chrX 11807564 11807742 -150792188 + CT-rich Low_complexity Low_complexity 3 180 0 1114 161 40 22 chrX 11807746 11807993 -150791937 - L1MA9 LINE L1 -4 6185 5926 231 36 0 0 chrX 11808720 11808748 -150791182 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1999 88 0 8 chrX 11808775 11809037 -150790893 - AluSq SINE Alu -53 260 1 1879 146 0 41 chrX 11812177 11812554 -150787376 + AluJo SINE Alu 11 374 0 2292 152 86 8 chrX 11812645 11813040 -150786890 - MSTB LTR MaLR 0 426 1 681 168 0 0 chrX 11813067 11813174 -150786756 - MER20 DNA MER1_type -20 199 93 360 214 0 0 chrX 11813170 11813254 -150786676 - MER53 DNA DNA -50 139 56 * 193 220 40 0 chrX 11813459 11813509 -150786421 + L2 LINE L2 3262 3313 0 1901 159 13 19 chrX 11813777 11814091 -150785839 + AluJo SINE Alu 1 312 0 227 217 72 60 chrX 11814118 11814201 -150785729 - L2 LINE L2 0 3313 3230 327 307 162 4 chrX 11814313 11814554 -150785376 - L1MC4a LINE L1 -1630 6178 5900 2093 207 26 46 chrX 11814554 11815096 -150784834 + LTR55 LTR ERV 1 531 -17 1035 224 144 32 chrX 11815104 11815457 -150784473 - L1MC4a LINE L1 -349 5772 5497 221 353 41 25 chrX 11815527 11815649 -150784281 + L2 LINE L2 3117 3240 -32 995 252 103 53 chrX 11815726 11816162 -150783768 + LTR16C LTR ERVL 34 491 0 1559 163 9 92 chrX 11816172 11816509 -150783421 - AluJb SINE Alu -3 309 1 223 284 40 14 chrX 11816516 11816590 -150783340 - MIR SINE MIR -123 139 64 568 222 217 35 chrX 11816772 11816975 -150782955 - MIR SINE MIR -22 240 1 650 223 68 86 chrX 11817110 11817465 -150782465 - MLT1L LTR MaLR 0 615 202 241 224 90 15 chrX 11817439 11817506 -150782424 - LTR67 LTR ERVL -389 168 97 * 425 213 44 88 chrX 11818013 11818173 -150781757 - MIR SINE MIR -2 260 108 624 205 18 0 chrX 11818284 11818396 -150781534 - MER81 DNA DNA 0 114 1 967 216 33 14 chrX 11818594 11818742 -150781188 - LTR8A LTR ERV1 -3 724 569 1661 60 0 0 chrX 11818742 11818943 -150780987 - AluY SINE Alu 0 311 111 967 216 33 14 chrX 11818943 11819007 -150780923 - LTR8A LTR ERV1 -158 569 508 248 77 77 0 chrX 11819002 11819041 -150780889 + Charlie5 DNA MER1_type 2464 2505 -107 * 697 97 32 78 chrX 11819041 11819154 -150780776 + Charlie5 DNA MER1_type 2438 2544 -41 2026 106 39 0 chrX 11819154 11819438 -150780492 + AluSx SINE Alu 1 295 -17 697 97 32 78 chrX 11819438 11819478 -150780452 + Charlie5 DNA MER1_type 2544 2584 -1 21 36 0 0 chrX 11819927 11819955 -150779975 + AT_rich Low_complexity Low_complexity 1 28 0 195 146 18 91 chrX 11820008 11820063 -150779867 - MIR SINE MIR -91 171 121 716 228 28 79 chrX 11820109 11820324 -150779606 - MER63A DNA MER1_type -5 205 2 2696 141 5 18 chrX 11820369 11820767 -150779163 - MSTD LTR MaLR -3 393 1 2210 92 7 16 chrX 11820836 11821140 -150778790 - AluSq SINE Alu -12 301 1 403 222 43 8 chrX 11822122 11822239 -150777691 + Charlie8 DNA MER1_type 85 205 -2212 230 173 58 0 chrX 11822237 11822289 -150777641 + Charlie8 DNA MER1_type 2360 2414 -3 * 1068 250 60 0 chrX 11822488 11822772 -150777158 + MER46C DNA MER2_type 17 317 -21 2467 182 7 9 chrX 11824030 11824475 -150775455 + L1PB4 LINE L1 5712 6155 -1 513 244 31 25 chrX 11824790 11824950 -150774980 + LTR37B LTR ERV1 1 161 -307 1133 232 119 3 chrX 11825004 11825357 -150774573 + LTR37A LTR ERV1 33 426 0 847 204 41 48 chrX 11825417 11825686 -150774244 + LTR37B LTR ERV1 197 463 -5 405 0 0 0 chrX 11826108 11826153 -150773777 + (CA)n Simple_repeat Simple_repeat 2 46 0 261 0 0 0 chrX 11826611 11826640 -150773290 + (TG)n Simple_repeat Simple_repeat 2 30 0 225 316 103 26 chrX 11826655 11826772 -150773158 + L2 LINE L2 3182 3307 -6 230 271 135 90 chrX 11827209 11827342 -150772588 - L2 LINE L2 0 3272 3134 2001 153 78 26 chrX 11828003 11828350 -150771580 - MLT1A1 LTR MaLR 0 365 1 2445 94 106 3 chrX 11828747 11829087 -150770843 - THE1C LTR MaLR 0 375 1 2448 139 127 5 chrX 11829712 11830152 -150769778 - LTR54B LTR ERV1 -2 496 3 302 234 9 0 chrX 11830571 11830678 -150769252 + (CA)n Simple_repeat Simple_repeat 2 109 0 2237 129 0 0 chrX 11830850 11831152 -150768778 + AluJb SINE Alu 1 302 -10 2802 196 95 29 chrX 11832247 11832803 -150767127 - MLT1E LTR MaLR 0 593 1 830 204 0 13 chrX 11832986 11833138 -150766792 - FRAM SINE Alu -7 169 20 591 288 112 0 chrX 11833410 11833625 -150766305 + MIR SINE MIR 3 241 -21 1588 132 0 0 chrX 11833650 11833905 -150766025 - AluSg/x SINE Alu 0 326 72 1951 141 0 10 chrX 11834320 11834617 -150765313 - AluJb SINE Alu -18 294 1 599 168 30 0 chrX 11834891 11834992 -150764938 - MER5A DNA MER1_type -77 112 9 316 177 35 133 chrX 11835314 11835362 -150764568 + MER21B LTR ERV1 732 764 -99 243 0 0 0 chrX 11835362 11835389 -150764541 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 316 177 35 133 chrX 11835389 11835453 -150764477 + MER21B LTR ERV1 764 833 -30 261 192 417 0 chrX 11835765 11835885 -150764045 - MER5B DNA MER1_type -7 171 2 767 251 27 0 chrX 11835893 11836076 -150763854 - MER5A DNA MER1_type -1 188 1 546 175 26 44 chrX 11836084 11836198 -150763732 + MER58A DNA MER1_type 1 112 0 779 170 20 14 chrX 11836230 11836377 -150763553 - MER5A DNA MER1_type -7 182 35 4249 171 31 36 chrX 11836381 11837221 -150762709 - MER21B LTR ERV1 -9 854 19 332 266 13 13 chrX 11837243 11837322 -150762608 - MER21B LTR ERV1 -773 90 12 371 102 0 0 chrX 11837336 11837385 -150762545 - MER5A DNA MER1_type -139 50 2 3273 101 11 15 chrX 11837413 11837465 -150762465 - L1PA16 LINE L1 -9 6157 6106 2399 117 141 5 chrX 11837465 11837842 -150762088 + MSTA LTR MaLR 1 428 0 3273 101 11 15 chrX 11837842 11838244 -150761686 - L1PA16 LINE L1 -60 6106 5705 2245 106 3 3 chrX 11838692 11838993 -150760937 + AluSx SINE Alu 1 301 -11 532 338 148 3 chrX 11839105 11839436 -150760494 - MLT1K LTR MaLR -141 447 69 1816 147 33 0 chrX 11839589 11839900 -150760030 + AluSx SINE Alu 1 320 0 728 104 37 20 chrX 11840665 11840909 -150759021 + (TA)n Simple_repeat Simple_repeat 1 248 0 23 33 0 0 chrX 11840909 11840939 -150758991 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 11840974 11840996 -150758934 + AT_rich Low_complexity Low_complexity 1 22 0 1175 159 85 0 chrX 11841851 11842052 -150757878 + MER20 DNA MER1_type 1 218 -1 401 178 0 11 chrX 11842815 11842905 -150757025 + CT-rich Low_complexity Low_complexity 1 89 0 24 0 0 0 chrX 11842964 11842988 -150756942 + AT_rich Low_complexity Low_complexity 1 24 0 682 278 92 49 chrX 11843533 11844124 -150755806 + L2 LINE L2 2531 3275 -38 2787 13 3 6 chrX 11844289 11844601 -150755329 + AluYa5 SINE Alu 1 311 0 1807 135 0 77 chrX 11844612 11844939 -150754991 + AluJb SINE Alu 1 302 -10 299 261 0 15 chrX 11845174 11845239 -150754691 + L2 LINE L2 3212 3275 -38 1165 164 83 83 chrX 11845346 11845670 -150754260 - MER33 DNA MER1_type 0 324 1 1051 282 69 28 chrX 11845719 11846315 -150753615 - L2 LINE L2 0 3313 2683 308 163 0 93 chrX 11846731 11846817 -150753113 + HsTC2 DNA Tc2 1819 1896 -2 508 213 40 87 chrX 11846825 11846975 -150752955 - MIR SINE MIR -118 144 2 428 181 0 11 chrX 11847562 11847656 -150752274 + GA-rich Low_complexity Low_complexity 3 95 0 560 271 21 0 chrX 11848292 11848436 -150751494 - MIR SINE MIR -65 197 51 268 254 0 0 chrX 11848483 11848538 -150751392 + MER46C DNA MER2_type 284 338 0 1077 216 68 15 chrX 11848727 11848991 -150750939 - MER46C DNA MER2_type -59 279 2 1914 199 89 60 chrX 11849424 11849941 -150749989 + MLT1F LTR MaLR 11 542 0 1125 246 101 26 chrX 11850847 11851304 -150748626 + MLT1H LTR MaLR 1 536 -13 805 299 175 18 chrX 11851405 11851806 -150748124 - HAL1 LINE L1 -1834 673 210 1042 116 152 54 chrX 11851989 11852213 -150747717 + THE1C LTR MaLR 1 246 -129 2271 110 0 16 chrX 11852222 11852532 -150747398 - AluSx SINE Alu -7 305 1 248 143 0 24 chrX 11852532 11852574 -150747356 + THE1C LTR MaLR 388 428 0 234 326 32 0 chrX 11854209 11854304 -150745626 + L3b LINE CR1 1301 1398 -185 2000 150 3 7 chrX 11854372 11854679 -150745251 - AluSx SINE Alu -2 310 5 1161 381 87 16 chrX 11855605 11856030 -150743900 - LTR16A1 LTR ERVL 0 457 3 984 161 89 0 chrX 11856039 11856207 -150743723 - MER5A DNA MER1_type -6 183 1 2162 131 0 0 chrX 11856450 11856747 -150743183 + AluSx SINE Alu 2 298 -14 402 301 7 37 chrX 11856764 11856900 -150743030 + MIR3 SINE MIR 1 132 -76 257 316 44 29 chrX 11856908 11857044 -150742886 + MIR3 SINE MIR 65 202 -6 369 0 0 0 chrX 11857652 11857693 -150742237 + (TG)n Simple_repeat Simple_repeat 2 42 0 1370 286 126 31 chrX 11857693 11857704 -150742226 - L2 LINE L2 -123 3190 3181 605 113 0 0 chrX 11857704 11857784 -150742146 - MADE1 DNA Mariner 0 80 1 1370 286 126 31 chrX 11857784 11858668 -150741262 - L2 LINE L2 -132 3181 2225 5115 167 27 5 chrX 11858984 11860002 -150739928 + L1MB5 LINE L1 5137 6173 -1 369 267 11 11 chrX 11861198 11861288 -150738642 - L2 LINE L2 -2 3270 3181 316 376 61 15 chrX 11862093 11862356 -150737574 + L3 LINE CR1 683 957 -620 22 35 0 0 chrX 11862704 11862733 -150737197 + AT_rich Low_complexity Low_complexity 1 29 0 2242 123 0 0 chrX 11863783 11864085 -150735845 - AluSx SINE Alu -10 302 1 272 263 119 17 chrX 11865528 11865646 -150734284 + L2 LINE L2 3139 3268 -4 276 310 92 87 chrX 11865830 11866233 -150733697 - L2 LINE L2 -11 3261 2857 279 258 151 0 chrX 11866363 11866456 -150733474 - MIR SINE MIR -69 139 33 242 256 11 89 chrX 11866993 11867083 -150732847 + MLT1J LTR MaLR 9 91 -420 842 158 10 19 chrX 11867086 11867268 -150732662 + L1MA4 LINE L1 5849 6033 -267 4319 62 0 0 chrX 11867271 11867784 -150732146 - L1PA7 LINE L1 0 6154 5642 2040 51 8 0 chrX 11867784 11868038 -150731892 + L1P3 LINE L1 5341 5596 -558 1369 148 12 23 chrX 11868052 11868066 -150731864 + L1MA4 LINE L1 6038 6051 -249 2117 133 0 22 chrX 11868066 11868383 -150731547 + AluSx SINE Alu 1 310 -2 1369 148 12 23 chrX 11868383 11868625 -150731305 + L1MA4 LINE L1 6051 6291 -9 424 226 18 98 chrX 11868920 11869040 -150730890 - L1ME3 LINE L1 0 6162 6057 995 187 64 46 chrX 11869040 11869259 -150730671 + MER58A DNA MER1_type 1 223 -1 424 226 18 98 chrX 11869259 11869302 -150730628 - L1ME3 LINE L1 -105 6057 6012 204 40 0 0 chrX 11869772 11869797 -150730133 + (T)n Simple_repeat Simple_repeat 1 25 0 294 173 19 0 chrX 11870744 11870796 -150729134 + LTR16C LTR ERVL 58 110 -381 940 228 84 8 chrX 11870879 11871116 -150728814 + LTR16C LTR ERVL 237 491 0 743 300 69 13 chrX 11871989 11872222 -150727708 + MIR SINE MIR 7 252 -10 1676 61 0 0 chrX 11873643 11873839 -150726091 - AluY SINE Alu -17 294 99 2255 104 0 0 chrX 11875091 11875388 -150724542 + AluSg SINE Alu 2 298 -12 417 174 0 23 chrX 11875488 11875574 -150724356 + AluS SINE Alu 225 308 -1 859 207 77 67 chrX 11876383 11876668 -150723262 + LTR8A LTR ERV1 376 663 -64 447 269 83 52 chrX 11877120 11877313 -150722617 - MIR SINE MIR 0 262 64 21 0 0 0 chrX 11877644 11877665 -150722265 + AT_rich Low_complexity Low_complexity 1 21 0 2141 245 82 14 chrX 11877747 11878418 -150721512 + L1MC4a LINE L1 5214 7482 -560 294 243 45 54 chrX 11878523 11878634 -150721296 + L2 LINE L2 2377 2486 -828 1929 150 0 13 chrX 11878647 11878953 -150720977 - AluJo SINE Alu -10 302 1 834 164 14 7 chrX 11879243 11879383 -150720547 - MLT1J2 LTR MaLR -308 142 2 26 64 0 0 chrX 11879431 11879478 -150720452 + AT_rich Low_complexity Low_complexity 1 47 0 2165 104 3 7 chrX 11879786 11880085 -150719845 - AluSx SINE Alu -14 298 1 329 142 8 213 chrX 11880446 11880573 -150719357 - MER5B DNA MER1_type -77 101 1 1326 159 23 5 chrX 11881143 11881357 -150718573 - MER20 DNA MER1_type 0 219 2 1202 136 23 50 chrX 11881550 11881770 -150718160 + MER20 DNA MER1_type 6 219 0 1054 206 10 5 chrX 11881840 11882044 -150717886 + MER20 DNA MER1_type 2 206 -13 1714 149 73 0 chrX 11882625 11882900 -150717030 + AluJb SINE Alu 1 295 -17 186 255 0 0 chrX 11883130 11883181 -150716749 + (CA)n Simple_repeat Simple_repeat 1 51 0 25 0 0 0 chrX 11883365 11883390 -150716540 + AT_rich Low_complexity Low_complexity 1 25 0 289 210 219 8 chrX 11883391 11883510 -150716420 - L1ME4a LINE L1 -12 6109 5966 292 294 82 14 chrX 11883645 11883791 -150716139 - L1ME4a LINE L1 -2 6119 5964 388 312 135 0 chrX 11884315 11884485 -150715445 + MIR SINE MIR 6 198 -64 3295 149 24 20 chrX 11884535 11885085 -150714845 + L1PB4 LINE L1 5603 6154 -2 1281 181 14 18 chrX 11885162 11885383 -150714547 + MER58A DNA MER1_type 5 224 0 342 300 138 6 chrX 11885394 11885554 -150714376 - MIR SINE MIR -79 183 3 2387 244 19 16 chrX 11885791 11886307 -150713623 - LTR40a LTR ERVL -1 518 1 515 350 94 31 chrX 11887485 11888070 -150711860 + L2 LINE L2 717 1338 -1976 379 228 269 13 chrX 11888095 11888244 -150711686 + L1MC4a LINE L1 5715 5901 -1907 3870 93 65 17 chrX 11888284 11888843 -150711087 + MER4-int LTR ERV1 1202 1796 -6324 2073 82 45 0 chrX 11888843 11889112 -150710818 + AluSg SINE Alu 17 297 -13 3870 93 65 17 chrX 11889112 11889188 -150710742 + MER4-int LTR ERV1 1796 1867 -6253 2730 157 40 56 chrX 11889203 11889927 -150710003 + MER4-int LTR ERV1 2349 4086 -2512 24 0 0 0 chrX 11889936 11889960 -150709970 + AT_rich Low_complexity Low_complexity 1 24 0 7332 114 15 11 chrX 11889960 11891403 -150708527 - L1MA2 LINE L1 -4 6300 4852 711 276 0 73 chrX 11891403 11891635 -150708295 + MIR SINE MIR 43 257 -5 2373 106 3 0 chrX 11891739 11892050 -150707880 + AluSx SINE Alu 1 312 0 2231 216 58 99 chrX 11892503 11893227 -150706703 + LTR8A LTR ERV1 34 727 0 906 187 16 50 chrX 11893229 11893411 -150706519 + MER45A DNA AcHobo 2 177 -1 243 57 0 57 chrX 11893795 11893848 -150706082 + (TTA)n Simple_repeat Simple_repeat 3 52 0 2264 112 0 3 chrX 11893856 11894160 -150705770 - AluSx SINE Alu -9 303 1 1211 54 0 0 chrX 11894281 11894428 -150705502 + AluY SINE Alu 146 292 -19 22 0 0 0 chrX 11895110 11895132 -150704798 + AT_rich Low_complexity Low_complexity 1 22 0 705 323 135 38 chrX 11895339 11895727 -150704203 + L2 LINE L2 983 1332 -1982 858 310 0 9 chrX 11895727 11895953 -150703977 + MER58A DNA MER1_type 1 224 0 705 323 135 38 chrX 11895953 11896997 -150702933 + L2 LINE L2 1332 2555 -759 215 302 16 0 chrX 11897144 11897207 -150702723 + MIR3 SINE MIR 126 189 -19 346 49 0 0 chrX 11897416 11897457 -150702473 + AluY SINE Alu 11 51 -250 736 292 59 33 chrX 11897562 11897903 -150702027 + L1MC4 LINE L1 7583 7990 -5 616 188 94 0 chrX 11898290 11898418 -150701512 - MER74A LTR ERVL 0 558 419 * 1132 176 0 6 chrX 11898413 11898595 -150701335 - MER74B LTR ERVL -361 261 81 318 162 270 0 chrX 11898635 11898709 -150701221 - MLT1F LTR MaLR -210 332 239 506 265 48 63 chrX 11899093 11899282 -150700648 - L2 LINE L2 0 3313 3128 2129 111 12 55 chrX 11899359 11899681 -150700249 - MER51B LTR ERV1 0 377 134 2901 85 3 0 chrX 11899681 11900035 -150699895 - THE1A LTR MaLR 0 355 1 2129 111 12 55 chrX 11900035 11900164 -150699766 - MER51B LTR ERV1 -243 134 1 260 294 60 72 chrX 11900197 11900432 -150699498 - L2 LINE L2 -2620 694 463 2251 98 0 23 chrX 11902756 11903063 -150696867 + AluSx SINE Alu 1 300 -12 1151 246 79 35 chrX 11903066 11903460 -150696470 - MLT1J LTR MaLR -98 413 3 904 146 0 0 chrX 11904137 11904274 -150695656 - FLAM_C SINE Alu -6 137 1 2250 118 0 0 chrX 11905848 11906145 -150693785 + AluSx SINE Alu 1 297 -15 1525 149 3 63 chrX 11906353 11906654 -150693276 + MER33 DNA MER1_type 20 302 -22 1621 199 16 6 chrX 11907025 11907337 -150692593 + MER61A LTR ERV1 1 315 -28 19684 135 89 78 chrX 11907554 11911790 -150688140 + L1P LINE L1 1 4283 -1863 7552 51 4 23 chrX 11911790 11912699 -150687231 + L1PA8 LINE L1 5269 6172 0 254 312 26 0 chrX 11913450 11913527 -150686403 + MIR SINE MIR 79 157 -105 3794 193 40 46 chrX 11913532 11913909 -150686021 + L1ME2 LINE L1 4901 5279 -885 2307 72 7 14 chrX 11913909 11914201 -150685729 + AluSq SINE Alu 1 290 -23 3794 193 40 46 chrX 11914201 11914844 -150685086 + L1ME2 LINE L1 5279 5901 -263 4130 120 38 65 chrX 11914844 11915554 -150684376 + LTR8 LTR ERV1 1 691 0 3794 193 40 46 chrX 11915554 11915808 -150684122 + L1ME2 LINE L1 5901 6155 -9 2226 81 0 7 chrX 11916259 11916574 -150683356 + AluSg1 SINE Alu 1 313 0 1563 177 92 16 chrX 11916939 11917256 -150682674 - MER58B DNA MER1_type 0 341 1 307 311 38 15 chrX 11917263 11917395 -150682535 + MIR SINE MIR 64 198 -64 3802 98 69 4 chrX 11917528 11918048 -150681882 - MER41A LTR ERV1 0 554 1 988 216 4 45 chrX 11919567 11919836 -150680094 + L1MB8 LINE L1 5915 6173 -5 208 319 121 32 chrX 11919882 11920039 -150679891 - L2 LINE L2 -508 2806 2636 869 152 13 0 chrX 11920242 11920393 -150679537 - L1M4 LINE L1 -676 5508 5356 1789 163 29 0 chrX 11920627 11920904 -150679026 - AluJb SINE Alu -27 285 1 1260 267 39 18 chrX 11921437 11921826 -150678104 - LTR16A LTR ERVL -29 421 25 454 227 67 0 chrX 11921834 11921953 -150677977 - L1MC4a LINE L1 -1942 5866 5740 7235 91 11 14 chrX 11921958 11922285 -150677645 - L1MA2 LINE L1 0 6304 5978 2071 89 67 7 chrX 11922285 11922567 -150677363 - AluSp SINE Alu -14 299 1 7235 91 11 14 chrX 11922567 11923278 -150676652 - L1MA2 LINE L1 -326 5978 5269 310 245 34 75 chrX 11923279 11923426 -150676504 - L1MC4a LINE L1 -2055 5753 5613 186 361 0 0 chrX 11923546 11923629 -150676301 - L2 LINE L2 -530 2784 2702 183 374 11 0 chrX 11923656 11923747 -150676183 - L2 LINE L2 -1156 2158 2067 1190 203 14 5 chrX 11925853 11926075 -150673855 + MER58A DNA MER1_type 1 224 0 795 137 7 43 chrX 11928107 11928246 -150671684 + MER20B DNA MER1_type 2 135 -84 480 216 105 39 chrX 11928422 11928575 -150671355 - MER103 DNA DNA -2 164 2 771 229 40 10 chrX 11928613 11928814 -150671116 + MER20B DNA MER1_type 546 752 -31 339 295 21 0 chrX 11928963 11929058 -150670872 - MIR3 SINE MIR -22 186 90 435 231 89 35 chrX 11929377 11929546 -150670384 + MARNA DNA Mariner 207 384 -202 1408 194 0 4 chrX 11930208 11930456 -150669474 - MER90 LTR ERV1 0 614 368 1244 172 74 39 chrX 11930458 11930668 -150669262 - MER90 LTR ERV1 -349 265 43 1765 98 27 0 chrX 11930668 11930892 -150669038 - MER30 DNA MER1_type 0 230 1 1244 172 74 39 chrX 11930892 11930937 -150668993 - MER90 LTR ERV1 -571 43 1 492 248 64 14 chrX 11930991 11931132 -150668798 - L1ME3A LINE L1 -61 6109 5962 2532 64 0 3 chrX 11931230 11931542 -150668388 + AluY SINE Alu 1 311 0 539 267 92 25 chrX 11931546 11931786 -150668144 - L1MC5 LINE L1 -460 7501 7246 931 195 158 7 chrX 11932449 11932721 -150667209 - LTR50 LTR ERVL -4 791 479 471 197 73 14 chrX 11932828 11932984 -150666946 - LTR50 LTR ERVL -585 210 1 734 269 60 30 chrX 11933697 11933965 -150665965 - L2 LINE L2 -9 3304 3029 1994 226 106 2 chrX 11933966 11934436 -150665494 + LTR40a LTR ERVL 1 519 0 1651 184 18 0 chrX 11934642 11934949 -150664981 + AluJb SINE Alu 1 312 0 13355 31 5 1 chrX 11935467 11937747 -150662183 - L1PA4 LINE L1 -3 6152 3867 1483 215 112 33 chrX 11937933 11938300 -150661630 - MSTD LTR MaLR 0 396 1 1967 146 17 7 chrX 11938544 11938846 -150661084 - AluSx SINE Alu -7 305 1 1682 184 28 0 chrX 11938860 11939180 -150660750 - L1MB7 LINE L1 -9 6175 5847 246 154 0 0 chrX 11939750 11939789 -150660141 + MLT2E LTR ERVL 10 48 -580 2511 148 45 30 chrX 11940565 11940991 -150658939 - MSTB1 LTR MaLR 0 432 1 1587 238 24 32 chrX 11941022 11941595 -150658335 - MLT2E LTR ERVL -8 620 6 928 183 24 0 chrX 11941893 11942057 -150657873 + MER58A DNA MER1_type 1 168 0 1022 211 148 78 chrX 11942199 11942612 -150657318 - MLT1J1 LTR MaLR -4 442 1 442 213 55 55 chrX 11942631 11942758 -150657172 - MIR SINE MIR -54 208 82 459 280 0 2 chrX 11943141 11943288 -150656642 - MER5A DNA MER1_type 0 189 9 387 0 0 0 chrX 11943643 11943686 -150656244 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 200 36 0 chrX 11943760 11943815 -150656115 + L1ME4a LINE L1 5971 6027 -94 532 324 71 63 chrX 11943914 11944281 -150655649 + L2 LINE L2 2899 3268 -4 1456 116 5 5 chrX 11945053 11945260 -150654670 - MER3 DNA MER1_type -2 207 1 1174 245 14 7 chrX 11946604 11946886 -150653044 + L1MCb LINE L1 814 1097 -4948 1696 165 3 30 chrX 11946890 11947193 -150652737 + AluJb SINE Alu 1 295 -17 1785 157 0 26 chrX 11947570 11947875 -150652055 - AluJo SINE Alu -15 297 1 190 292 45 34 chrX 11948176 11948265 -150651665 + MER5A DNA MER1_type 78 167 -22 23 68 0 0 chrX 11948768 11948812 -150651118 + AT_rich Low_complexity Low_complexity 1 44 0 652 147 62 70 chrX 11949165 11949294 -150650636 + FLAM_A SINE Alu 2 129 -4 1870 123 0 74 chrX 11950106 11950445 -150649485 + AluSx SINE Alu 1 316 0 4332 83 14 3 chrX 11950555 11951145 -150648785 + L1PB1 LINE L1 5524 6119 -32 186 419 43 0 chrX 11951708 11951801 -150648129 + L2 LINE L2 3150 3246 -26 710 196 0 95 chrX 11952047 11952215 -150647715 - MER5B DNA MER1_type -26 152 1 197 239 273 57 chrX 11952228 11952316 -150647614 - MER5A DNA MER1_type -6 183 77 519 324 72 24 chrX 11952316 11952566 -150647364 + L1MC4a LINE L1 5574 5835 -1973 1246 199 75 33 chrX 11952730 11953288 -150646642 - MER92B LTR ERV1 -15 621 1 2383 88 0 25 chrX 11953354 11953671 -150646259 + AluSx SINE Alu 1 309 -3 728 315 56 29 chrX 11954695 11955073 -150644857 + LTR16B LTR ERVL 7 394 -70 3117 127 16 12 chrX 11955073 11955584 -150644346 - L1 LINE L1 -1503 4643 4131 980 181 7 0 chrX 11957597 11957752 -150642178 + Tigger7 DNA MER2_type 1 156 -549 1624 160 19 0 chrX 11957784 11958047 -150641883 + Tigger7 DNA MER2_type 258 525 -1962 3074 134 41 21 chrX 11958050 11958277 -150641653 + Tigger7 DNA MER2_type 1769 1990 -497 288 0 0 0 chrX 11958277 11958309 -150641621 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3074 134 41 21 chrX 11958309 11958595 -150641335 + Tigger7 DNA MER2_type 1990 2292 -195 345 185 0 0 chrX 11958600 11958654 -150641276 + Tigger7 DNA MER2_type 2397 2450 -41 25 0 0 0 chrX 11959879 11959904 -150640026 + AT_rich Low_complexity Low_complexity 1 25 0 1718 183 26 54 chrX 11960128 11960254 -150639676 + MER58B DNA MER1_type 1 129 -2291 2129 107 3 58 chrX 11960254 11960581 -150639349 - AluSx SINE Alu -3 309 1 1718 183 26 54 chrX 11960581 11960804 -150639126 + MER58B DNA MER1_type 129 340 -1 587 282 107 30 chrX 11961850 11962148 -150637782 + LTR16C LTR ERVL 168 488 -3 1872 100 29 0 chrX 11962206 11962485 -150637445 + L1MA8 LINE L1 6002 6288 -3 22 0 0 0 chrX 11962491 11962513 -150637417 + AT_rich Low_complexity Low_complexity 1 22 0 638 269 96 80 chrX 11962536 11962985 -150636945 - Charlie8 DNA MER1_type -1926 491 36 370 231 116 54 chrX 11963508 11963750 -150636180 + L1MC5 LINE L1 7677 7933 -28 497 279 27 0 chrX 11964432 11964579 -150635351 + MIR SINE MIR 40 190 -72 1082 172 30 5 chrX 11964600 11964803 -150635127 - LTR37A LTR ERV1 -218 208 1 1999 155 0 3 chrX 11964991 11965275 -150634655 + AluJo SINE Alu 1 283 -29 7848 109 7 0 chrX 11966007 11967075 -150632855 - HSMAR2 DNA Mariner -1 1301 227 1298 143 31 45 chrX 11967075 11967299 -150632631 - AluJb SINE Alu -6 306 86 1074 94 137 57 chrX 11967301 11967429 -150632501 - HSMAR2 DNA Mariner -1072 230 76 2203 109 3 0 chrX 11967429 11967735 -150632195 + AluSp SINE Alu 1 307 0 1074 94 137 57 chrX 11967735 11967817 -150632113 - HSMAR2 DNA Mariner -1226 76 2 368 245 158 0 chrX 11968241 11968380 -150631550 + L2 LINE L2 3152 3312 -1 261 0 0 0 chrX 11968935 11968964 -150630966 + (TG)n Simple_repeat Simple_repeat 1 29 0 274 241 17 0 chrX 11969017 11969075 -150630855 - MLT1K LTR MaLR 0 588 530 215 266 22 49 chrX 11969186 11969370 -150630560 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 342 288 6 0 chrX 11969521 11969662 -150630268 + (TA)n Simple_repeat Simple_repeat 2 146 -19 565 93 13 0 chrX 11969662 11969737 -150630193 - MADE1 DNA Mariner -3 77 2 342 288 6 0 chrX 11969737 11969758 -150630172 + (TA)n Simple_repeat Simple_repeat 146 165 0 13076 102 119 70 chrX 11970255 11970374 -150629556 - Tigger1 DNA MER2_type 0 2418 2306 2281 53 0 21 chrX 11970374 11970657 -150629273 + AluY SINE Alu 23 299 -12 13076 102 119 70 chrX 11970657 11971419 -150628511 - Tigger1 DNA MER2_type -112 2306 1584 825 152 15 8 chrX 11971419 11971551 -150628379 - FLAM_C SINE Alu -10 133 1 13076 102 119 70 chrX 11971551 11972838 -150627092 - Tigger1 DNA MER2_type -834 1584 3 380 291 37 22 chrX 11972842 11972976 -150626954 - MIR3 SINE MIR -70 138 3 335 248 79 40 chrX 11973257 11973358 -150626572 + L2 LINE L2 3167 3271 -1 508 296 87 10 chrX 11974123 11974319 -150625611 + MIR SINE MIR 46 256 -6 192 302 0 0 chrX 11974569 11974622 -150625308 + L2 LINE L2 3206 3258 -14 226 263 0 26 chrX 11974622 11974698 -150625232 + GA-rich Low_complexity Low_complexity 4 77 0 225 286 14 0 chrX 11975056 11975126 -150624804 + MIR SINE MIR 83 153 -55 833 218 47 6 chrX 11975134 11975304 -150624626 + MER5B DNA MER1_type 2 178 0 494 230 171 13 chrX 11975336 11975488 -150624442 + MER5A DNA MER1_type 14 189 0 183 143 0 0 chrX 11975568 11975596 -150624334 + MIR SINE MIR 217 244 -18 1360 264 91 22 chrX 11976330 11976780 -150623150 + LTR16C LTR ERVL 11 491 0 528 242 81 43 chrX 11977008 11977211 -150622719 + MIR SINE MIR 16 229 -33 233 224 45 15 chrX 11977269 11977336 -150622594 - MLT1L LTR MaLR -11 604 536 377 227 30 49 chrX 11977730 11977860 -150622070 - MLT1H LTR MaLR -254 210 94 808 265 19 14 chrX 11979501 11979712 -150620218 - MIR SINE MIR -36 226 15 974 167 4 84 chrX 11979803 11979956 -150619974 - MER20 DNA MER1_type -3 216 85 189 0 0 0 chrX 11979956 11979977 -150619953 + (CCA)n Simple_repeat Simple_repeat 1 21 0 974 167 4 84 chrX 11979977 11980050 -150619880 - MER20 DNA MER1_type -134 85 8 1298 171 68 39 chrX 11981032 11981342 -150618588 + MER33 DNA MER1_type 6 324 0 1972 208 97 16 chrX 11981639 11982091 -150617839 - MLT1D LTR MaLR -16 489 1 323 296 82 22 chrX 11982464 11982599 -150617331 - MIR SINE MIR -36 226 84 1203 230 173 0 chrX 11982811 11983141 -150616789 - LTR16C LTR ERVL -2 489 103 1060 156 30 18 chrX 11983307 11983506 -150616424 + MLT1B LTR MaLR 1 193 -181 333 0 0 0 chrX 11983956 11983993 -150615937 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1967 94 4 0 chrX 11983993 11984237 -150615693 + AluSp SINE Alu 1 245 -68 1682 101 0 0 chrX 11984256 11984483 -150615447 + MLT1B LTR MaLR 164 390 0 1732 234 81 13 chrX 11984687 11984903 -150615027 - MLT1J LTR MaLR -20 491 291 2766 122 41 19 chrX 11984903 11985321 -150614609 - MSTA LTR MaLR -1 427 1 1732 234 81 13 chrX 11985321 11985562 -150614368 - MLT1J LTR MaLR -220 291 3 256 267 0 89 chrX 11985581 11985671 -150614259 - MIR SINE MIR -115 147 66 300 212 0 15 chrX 11986026 11986092 -150613838 + L2 LINE L2 3208 3272 0 189 0 0 0 chrX 11986143 11986164 -150613766 + (TA)n Simple_repeat Simple_repeat 2 22 0 248 221 35 71 chrX 11986164 11986277 -150613653 - L1MC4 LINE L1 -1339 6703 6595 236 111 22 0 chrX 11986284 11986329 -150613601 + (TA)n Simple_repeat Simple_repeat 1 46 0 343 177 62 68 chrX 11986764 11986912 -150613018 + HsTC2 DNA Tc2 589 1892 -6 608 151 55 116 chrX 11987015 11987065 -150612865 - MLT1F LTR MaLR -2 565 513 6486 20 7 0 chrX 11987065 11987794 -150612136 + L1PA4 LINE L1 5434 6167 0 608 151 55 116 chrX 11987794 11987888 -150612042 - MLT1F LTR MaLR -54 513 429 247 91 0 0 chrX 11987895 11987928 -150612002 - L1MC1 LINE L1 -16 6317 6285 4147 101 4 0 chrX 11987940 11988495 -150611435 - L1PA13 LINE L1 -7 6156 5600 231 0 0 0 chrX 11988544 11988569 -150611361 - L1PA13 LINE L1 -564 5597 5573 1478 191 42 3 chrX 11988570 11988922 -150611008 - MLT1F LTR MaLR -125 417 53 551 252 28 23 chrX 11989022 11989240 -150610690 + AluSx SINE Alu 52 270 -42 767 231 74 81 chrX 11989242 11989451 -150610479 - LTR40a LTR ERVL -223 296 88 2419 77 0 13 chrX 11989451 11989764 -150610166 + AluSg1 SINE Alu 1 309 0 767 231 74 81 chrX 11989764 11989852 -150610078 - LTR40a LTR ERVL -431 88 1 180 45 136 68 chrX 11990123 11990167 -150609763 - L2 LINE L2 -936 2378 2332 228 329 112 53 chrX 11991233 11991403 -150608527 + MARNA DNA Mariner 88 267 -319 1453 224 54 38 chrX 11991404 11991903 -150608027 + L1ME3A LINE L1 5621 6165 -5 2284 92 0 10 chrX 11993440 11993733 -150606197 + AluSx SINE Alu 2 291 -21 25 31 0 0 chrX 11993737 11993769 -150606161 + AT_rich Low_complexity Low_complexity 1 32 0 2778 108 14 0 chrX 11994485 11994855 -150605075 - THE1C LTR MaLR 0 375 1 243 0 0 0 chrX 11995357 11995384 -150604546 + (A)n Simple_repeat Simple_repeat 1 27 0 874 168 168 0 chrX 11996549 11996716 -150603214 + MER3 DNA MER1_type 15 209 0 809 217 128 66 chrX 11997171 11997570 -150602360 + MER57A LTR ERV1 1 403 0 3209 113 19 33 chrX 11997588 11998056 -150601874 + MER31A LTR ERV1 4 466 -19 2399 75 0 3 chrX 11998056 11998348 -150601582 - AluSc SINE Alu -18 291 1 3209 113 19 33 chrX 11998348 11998366 -150601564 + MER31A LTR ERV1 466 483 -2 1223 164 38 26 chrX 11998410 11998783 -150601147 + MER90 LTR ERV1 3 451 -163 1422 146 84 18 chrX 12000135 12000448 -150599482 + MER33 DNA MER1_type 1 324 0 1049 210 32 23 chrX 12000456 12000675 -150599255 + MER58A DNA MER1_type 2 222 -2 554 214 90 7 chrX 12000741 12000886 -150599044 - MIR SINE MIR -15 247 91 219 36 0 0 chrX 12000991 12001019 -150598911 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 241 266 75 43 chrX 12001380 12001474 -150598456 + MIR SINE MIR 95 191 -71 451 220 44 88 chrX 12001815 12001974 -150597956 - MER5B DNA MER1_type -25 153 2 193 276 69 102 chrX 12002069 12002315 -150597615 - L2 LINE L2 -507 2807 2570 231 247 278 0 chrX 12002402 12002499 -150597431 + L2 LINE L2 3185 3308 -5 3340 125 6 4 chrX 12002685 12003182 -150596748 + L1MB3 LINE L1 5568 6065 -118 740 247 139 46 chrX 12003346 12003645 -150596285 + L1ME4a LINE L1 5600 5961 -160 2792 123 21 86 chrX 12003645 12003688 -150596242 + L1MB7 LINE L1 5651 5695 -489 2382 96 0 0 chrX 12003688 12003990 -150595940 + AluSx SINE Alu 1 302 -10 2792 123 21 86 chrX 12003990 12004516 -150595414 + L1MB7 LINE L1 5695 6183 -1 740 247 139 46 chrX 12004516 12004690 -150595240 + L1ME4a LINE L1 5961 6117 -4 444 125 0 125 chrX 12005739 12005789 -150594141 - L1MB2 LINE L1 -3 6168 6136 2241 105 7 3 chrX 12005789 12006085 -150593845 - AluSc SINE Alu -12 297 1 444 125 0 125 chrX 12006085 12006138 -150593792 - L1MB2 LINE L1 -35 6136 6078 785 243 118 47 chrX 12006246 12006420 -150593510 - L1ME4a LINE L1 -4 6117 5957 3056 137 47 40 chrX 12006420 12006991 -150592939 - L1MB7 LINE L1 -1 6183 5609 2388 89 3 0 chrX 12007001 12007303 -150592627 - AluY SINE Alu -8 303 1 785 243 118 47 chrX 12007303 12007583 -150592347 - L1ME4a LINE L1 -172 5949 5619 22 0 0 0 chrX 12007923 12007945 -150591985 + AT_rich Low_complexity Low_complexity 1 22 0 242 256 281 16 chrX 12009968 12010089 -150589841 + MER5A DNA MER1_type 31 183 -6 784 237 17 28 chrX 12010111 12010288 -150589642 + MER5B DNA MER1_type 3 177 -1 320 257 66 21 chrX 12010300 12010451 -150589479 - MIR SINE MIR -65 143 36 261 0 0 0 chrX 12010686 12010715 -150589215 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2300 100 7 0 chrX 12011608 12011908 -150588022 + AluSq SINE Alu 1 302 -11 2139 105 3 40 chrX 12012122 12012446 -150587484 - AluJb SINE Alu 0 312 1 804 286 81 31 chrX 12012476 12012833 -150587097 - L2 LINE L2 -361 2953 2579 1809 153 47 0 chrX 12013481 12013755 -150586175 + AluJb SINE Alu 1 287 -25 338 293 88 7 chrX 12013965 12014112 -150585818 - L2 LINE L2 -156 3116 2958 508 242 203 0 chrX 12014117 12014270 -150585660 - MIR SINE MIR -30 232 49 2027 115 0 17 chrX 12014693 12015006 -150584924 - AluSx SINE Alu 0 308 1 2253 110 0 0 chrX 12015945 12016237 -150583693 + AluSx SINE Alu 1 292 -20 697 114 114 29 chrX 12016245 12016385 -150583545 + L1MB8 LINE L1 6027 6178 0 343 233 83 0 chrX 12016858 12016951 -150582979 + MER5A DNA MER1_type 10 98 -80 202 322 11 22 chrX 12016973 12017063 -150582867 + L2 LINE L2 1444 1532 -1782 2111 230 94 26 chrX 12017091 12017708 -150582222 + L2 LINE L2 1885 2543 -771 4079 182 5 89 chrX 12017708 12017904 -150582026 + L1MB8 LINE L1 5308 5519 -659 207 0 0 0 chrX 12017904 12017927 -150582003 + (CA)n Simple_repeat Simple_repeat 2 24 0 4079 182 5 89 chrX 12017927 12018033 -150581897 + L1MB8 LINE L1 5519 5632 -546 2444 41 3 7 chrX 12018033 12018323 -150581607 - AluY SINE Alu -22 289 1 4079 182 5 89 chrX 12018323 12018970 -150580960 + L1MB8 LINE L1 5632 6178 0 1484 214 27 93 chrX 12018970 12019446 -150580484 + L2 LINE L2 2536 2971 -342 1762 174 0 10 chrX 12019446 12019740 -150580190 - AluJb SINE Alu -21 291 1 1484 214 27 93 chrX 12019740 12019821 -150580109 + L2 LINE L2 2971 3056 -257 2183 114 0 13 chrX 12019851 12020159 -150579771 - AluSg SINE Alu -6 304 1 6497 19 0 0 chrX 12020169 12020867 -150579063 - L1PA3 LINE L1 0 6155 5458 453 0 0 0 chrX 12020867 12020918 -150579012 + L1P LINE L1 5235 5285 -861 2325 82 3 0 chrX 12020920 12021211 -150578719 - AluY SINE Alu -17 294 3 879 209 29 38 chrX 12021342 12021552 -150578378 - MER3 DNA MER1_type -1 208 1 2425 109 73 3 chrX 12021631 12021971 -150577959 - THE1B LTR MaLR 0 364 1 2341 112 0 0 chrX 12022034 12022346 -150577584 - AluSx SINE Alu 0 312 1 1063 257 26 48 chrX 12022958 12023269 -150576661 - MLT1I LTR MaLR -2 407 104 10644 45 6 1 chrX 12023425 12025434 -150574496 - L1PA5 LINE L1 -3 6151 4139 186 133 0 0 chrX 12025968 12025998 -150573932 + (CA)n Simple_repeat Simple_repeat 1 30 0 1626 134 107 8 chrX 12026006 12026268 -150573662 - AluSx SINE Alu -24 288 1 1481 180 12 26 chrX 12026713 12026993 -150572937 + L1MB7 LINE L1 5876 6120 -64 2595 56 0 0 chrX 12027537 12027843 -150572087 - AluY SINE Alu -5 306 1 487 187 28 9 chrX 12027912 12028019 -150571911 - L2 LINE L2 -3 3310 3202 2034 111 17 14 chrX 12028036 12028518 -150571412 - AluSx SINE Alu 0 312 1 5461 13 3 0 chrX 12028554 12029348 -150570582 + L1PA3 LINE L1 5073 5868 -287 1082 274 124 53 chrX 12029565 12030241 -150569689 + L2 LINE L2 2146 2869 -445 822 192 26 0 chrX 12030271 12030427 -150569503 + LTR16C LTR ERVL 332 491 0 2483 75 3 0 chrX 12031387 12031695 -150568235 - AluY SINE Alu -2 309 1 281 307 13 0 chrX 12032949 12033024 -150566906 + L2 LINE L2 3238 3313 0 336 222 22 44 chrX 12033086 12033176 -150566754 + MIR3 SINE MIR 111 198 -10 779 268 10 10 chrX 12033238 12033447 -150566483 + LTR16B LTR ERVL 1 209 -255 821 263 61 12 chrX 12033477 12033724 -150566206 - MIR SINE MIR 0 262 4 987 314 79 83 chrX 12033731 12034307 -150565623 + L2 LINE L2 1963 2540 -732 189 0 0 0 chrX 12034307 12034328 -150565602 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 987 314 79 83 chrX 12034328 12035006 -150564924 + L2 LINE L2 2540 3221 -51 4900 156 32 12 chrX 12035538 12035851 -150564079 + L1MB7 LINE L1 5287 5592 -592 1775 152 118 9 chrX 12035851 12036180 -150563750 - MLT1A1 LTR MaLR 0 365 1 4900 156 32 12 chrX 12036180 12036727 -150563203 + L1MB7 LINE L1 5592 6165 -19 1270 141 33 50 chrX 12036826 12037068 -150562862 - L1MA4A LINE L1 -2 6301 6064 408 302 47 0 chrX 12037249 12037355 -150562575 + L2 LINE L2 3147 3257 -15 1109 161 43 0 chrX 12037389 12037575 -150562355 + MER20 DNA MER1_type 25 218 -1 1556 190 77 3 chrX 12038110 12038420 -150561510 + MER58B DNA MER1_type 9 341 0 241 276 197 0 chrX 12038465 12038592 -150561338 + MIR3 SINE MIR 34 185 -23 340 239 117 49 chrX 12040421 12040584 -150559346 + MIR SINE MIR 76 249 -13 21 36 0 0 chrX 12041696 12041724 -150558206 + AT_rich Low_complexity Low_complexity 1 28 0 192 360 73 33 chrX 12041908 12042058 -150557872 - L2 LINE L2 0 3272 3117 2256 112 7 0 chrX 12042393 12042697 -150557233 - AluSx SINE Alu -6 306 1 1041 240 80 0 chrX 12042827 12043102 -150556828 - LTR16A1 LTR ERVL 0 457 161 310 204 174 20 chrX 12043719 12043817 -150556113 - L2 LINE L2 -1 3312 3200 183 42 0 0 chrX 12043828 12043852 -150556078 + (CAT)n Simple_repeat Simple_repeat 1 24 0 207 69 0 0 chrX 12044615 12044644 -150555286 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chrX 12044763 12044793 -150555137 + AT_rich Low_complexity Low_complexity 1 30 0 393 277 87 39 chrX 12044928 12045193 -150554737 - L1MC4a LINE L1 -346 5775 5588 1957 145 3 0 chrX 12045205 12045501 -150554429 - AluJo SINE Alu -15 297 1 229 209 23 0 chrX 12045583 12045623 -150554307 + MER20 DNA MER1_type 1 41 -178 594 168 6 95 chrX 12045623 12045719 -150554211 - MER53 DNA DNA -2 187 113 1037 94 13 184 chrX 12045719 12045952 -150553978 + 7SK RNA RNA 1 193 0 594 168 6 95 chrX 12045952 12046034 -150553896 - MER53 DNA DNA -76 113 25 685 182 130 19 chrX 12046035 12046189 -150553741 - AluJo SINE Alu -21 291 121 865 157 116 23 chrX 12046213 12046385 -150553545 + MER20 DNA MER1_type 32 219 0 1018 211 73 0 chrX 12046446 12046650 -150553280 + MER20 DNA MER1_type 1 219 0 2269 100 0 0 chrX 12046988 12047277 -150552653 + AluSx SINE Alu 5 293 -19 21 0 0 0 chrX 12048005 12048026 -150551904 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chrX 12048041 12048074 -150551856 + (TTG)n Simple_repeat Simple_repeat 2 34 0 402 267 182 0 chrX 12048074 12048250 -150551680 - L1ME4a LINE L1 -45 6076 5869 363 145 34 34 chrX 12048262 12048441 -150551489 + (TA)n Simple_repeat Simple_repeat 1 179 0 1778 247 70 7 chrX 12048679 12049299 -150550631 - L1ME3A LINE L1 0 6170 5494 281 45 0 45 chrX 12049715 12049759 -150550171 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1007 305 30 129 chrX 12049764 12050098 -150549832 - AluSx SINE Alu 0 302 2 1037 110 23 75 chrX 12050130 12050303 -150549627 + AluSq SINE Alu 6 169 -144 1310 148 80 8 chrX 12050322 12050559 -150549371 - L1MB5 LINE L1 -6 6168 5915 438 209 55 0 chrX 12051989 12052080 -150547850 - MLT1L LTR MaLR -180 435 340 371 91 227 0 chrX 12052920 12052986 -150546944 - LTR16C LTR ERVL 0 491 411 400 262 52 52 chrX 12053119 12053329 -150546601 - LTR16C LTR ERVL -149 342 133 327 133 0 0 chrX 12054061 12054106 -150545824 + FLAM SINE Alu 81 125 -8 1606 175 10 29 chrX 12054120 12054428 -150545502 + AluJo SINE Alu 1 302 -10 258 272 25 0 chrX 12057323 12057404 -150542526 + CT-rich Low_complexity Low_complexity 2 84 0 453 173 0 0 chrX 12057594 12057675 -150542255 - MLT1I LTR MaLR -2 407 327 343 224 75 37 chrX 12057917 12058024 -150541906 - MLT1J2 LTR MaLR -62 388 233 255 240 31 52 chrX 12058129 12058225 -150541705 - MLT1I LTR MaLR -313 96 3 2247 112 0 13 chrX 12058299 12058613 -150541317 + AluSx SINE Alu 1 310 -2 292 317 236 18 chrX 12058934 12059316 -150540614 + L3 LINE CR1 1113 1577 0 192 151 151 27 chrX 12059642 12059715 -150540215 + MIR SINE MIR 77 158 -104 970 247 28 4 chrX 12059827 12060082 -150539848 + LTR16C LTR ERVL 231 491 0 263 230 40 40 chrX 12060089 12060189 -150539741 + MIR SINE MIR 163 262 0 5540 51 12 10 chrX 12060918 12061589 -150538341 - SVA Other Other 0 1386 715 2011 121 3 3 chrX 12061741 12062023 -150537907 + AluSx SINE Alu 1 282 -30 281 67 0 22 chrX 12062024 12062069 -150537861 + (TA)n Simple_repeat Simple_repeat 2 45 0 676 262 25 74 chrX 12062369 12062613 -150537317 + MIR SINE MIR 20 251 -11 614 316 107 0 chrX 12062881 12063106 -150536824 - MIR SINE MIR 0 262 14 2290 99 0 13 chrX 12063628 12063930 -150536000 - AluSx SINE Alu -14 298 1 25 0 0 0 chrX 12065005 12065030 -150534900 + AT_rich Low_complexity Low_complexity 1 25 0 2309 112 0 0 chrX 12065206 12065519 -150534411 + AluSq SINE Alu 1 313 0 348 277 89 0 chrX 12065547 12065648 -150534282 + MIR3 SINE MIR 58 167 -41 1869 5 0 0 chrX 12065738 12065937 -150533993 - AluYb8 SINE Alu -9 309 111 435 99 56 0 chrX 12066127 12066198 -150533732 - MER116 DNA Mariner -5 75 1 1964 208 86 64 chrX 12068486 12069021 -150530909 - MLT1H LTR MaLR 0 549 3 291 343 48 0 chrX 12069845 12069974 -150529956 + MIR SINE MIR 38 170 -66 1777 209 9 6 chrX 12069977 12070316 -150529614 - LTR16C LTR ERVL 0 491 152 543 257 39 113 chrX 12070336 12070620 -150529310 - LTR16C LTR ERVL -158 333 71 852 202 53 21 chrX 12071487 12071675 -150528255 - MER58A DNA MER1_type 0 224 31 1862 154 3 20 chrX 12071950 12072256 -150527674 + AluJo SINE Alu 1 301 -11 23 0 0 0 chrX 12072382 12072405 -150527525 + AT_rich Low_complexity Low_complexity 1 23 0 2048 89 22 11 chrX 12072414 12072684 -150527246 - AluSg SINE Alu -1 309 37 593 146 0 0 chrX 12074345 12074434 -150525496 + AluJo SINE Alu 45 133 -179 2368 90 0 34 chrX 12074439 12074760 -150525170 + AluSx SINE Alu 1 310 -2 1195 172 0 0 chrX 12074772 12074964 -150524966 + AluJo SINE Alu 121 312 0 422 142 92 3 chrX 12075094 12075229 -150524701 - MER53 DNA DNA -4 185 1 3611 178 30 8 chrX 12076732 12077322 -150522608 - MER77 LTR ERV1 -2 603 1 215 349 46 49 chrX 12077342 12077581 -150522349 - L2 LINE L2 -1303 2011 1772 2172 100 23 16 chrX 12077581 12077890 -150522040 + AluSp SINE Alu 1 311 -2 215 349 46 49 chrX 12077890 12077934 -150521996 - L2 LINE L2 -1542 1772 1729 1967 124 17 33 chrX 12080548 12080847 -150519083 + AluSx SINE Alu 1 294 -18 21 0 0 0 chrX 12080847 12080868 -150519062 + AT_rich Low_complexity Low_complexity 1 21 0 287 47 27 5 chrX 12081197 12081246 -150518684 + AluY SINE Alu 1 36 -265 276 128 0 0 chrX 12081237 12081284 -150518646 + AluSc SINE Alu 253 299 0 * 2608 41 0 13 chrX 12081338 12081653 -150518277 - AluY SINE Alu 0 311 1 923 158 0 0 chrX 12082841 12082974 -150516956 - FLAM_C SINE Alu 0 133 1 24 32 0 0 chrX 12083284 12083315 -150516615 + AT_rich Low_complexity Low_complexity 1 31 0 530 195 78 23 chrX 12083538 12083666 -150516264 + MLT1H LTR MaLR 415 549 0 1869 162 0 16 chrX 12083768 12084076 -150515854 + AluJb SINE Alu 1 303 -9 748 249 90 92 chrX 12084242 12084676 -150515254 + MLT1J LTR MaLR 1 433 -78 593 341 188 26 chrX 12084948 12085899 -150514031 + L2 LINE L2 165 1269 -2045 4657 64 37 23 chrX 12085963 12086985 -150512945 - MER11A LTR ERVK 0 1266 1 617 213 46 60 chrX 12087739 12087955 -150511975 + L1MC5 LINE L1 7603 7815 -146 912 238 19 5 chrX 12087969 12088175 -150511755 - MER58A DNA MER1_type -15 209 1 316 245 69 20 chrX 12088178 12088280 -150511650 + L1MC5 LINE L1 7807 7913 -48 2221 135 0 0 chrX 12088375 12088679 -150511251 - AluSx SINE Alu -8 304 1 211 200 93 53 chrX 12089000 12089075 -150510855 + MIR SINE MIR 89 166 -96 225 336 33 16 chrX 12089256 12089378 -150510552 - L1MC/D LINE L1 -2212 5596 5473 2127 118 11 0 chrX 12089834 12090121 -150509809 - AluSx SINE Alu -22 290 1 8068 29 0 2 chrX 12090232 12091702 -150508228 + L1PA4 LINE L1 4689 6155 0 378 287 0 0 chrX 12091764 12091851 -150508079 - LTR40a LTR ERVL -4 515 429 1112 165 5 20 chrX 12091856 12092056 -150507874 + AluSx SINE Alu 1 197 -115 228 0 0 75 chrX 12092157 12092197 -150507733 + L1PA3 LINE L1 6119 6155 0 189 94 0 0 chrX 12092215 12092247 -150507683 + (A)n Simple_repeat Simple_repeat 1 32 0 950 266 135 35 chrX 12092263 12092774 -150507156 - L1MC/D LINE L1 -1794 4352 3791 202 313 173 0 chrX 12094078 12094327 -150505603 + L2 LINE L2 2947 3238 -75 319 189 176 0 chrX 12094446 12094520 -150505410 + L2 LINE L2 3186 3272 0 22 56 0 0 chrX 12095106 12095142 -150504788 + AT_rich Low_complexity Low_complexity 1 36 0 2347 81 0 13 chrX 12095578 12095876 -150504054 - AluSg SINE Alu -16 294 1 1629 154 0 26 chrX 12097111 12097384 -150502546 - L1PA15 LINE L1 -7 6158 5893 405 284 78 64 chrX 12099562 12099780 -150500150 - MIR SINE MIR -12 250 30 823 129 14 61 chrX 12099780 12099927 -150500003 + MER20 DNA MER1_type 2 141 -78 30 27 0 0 chrX 12099927 12099964 -150499966 + AT_rich Low_complexity Low_complexity 1 37 0 593 132 22 0 chrX 12099964 12100055 -150499875 + MER20 DNA MER1_type 126 218 -1 2592 71 0 0 chrX 12100222 12100530 -150499400 + AluSg SINE Alu 1 308 -2 1793 136 22 51 chrX 12100863 12101179 -150498751 + AluJo SINE Alu 1 307 -5 1176 224 110 0 chrX 12103296 12103551 -150496379 - MER119 DNA MER1_type -300 283 1 379 315 134 33 chrX 12103952 12104228 -150495702 - HAL1 LINE L1 -2199 308 5 221 374 10 0 chrX 12104484 12104583 -150495347 - L2 LINE L2 -942 2372 2273 236 277 44 9 chrX 12104861 12104951 -150494979 + MIR SINE MIR 46 137 -71 1861 141 0 51 chrX 12104968 12105280 -150494650 + AluJo SINE Alu 1 296 -16 225 222 93 37 chrX 12105469 12105577 -150494353 - L2 LINE L2 -1350 1964 1851 1107 153 63 5 chrX 12106769 12106959 -150492971 - MER3 DNA MER1_type 0 209 9 297 75 0 0 chrX 12107015 12107055 -150492875 + (T)n Simple_repeat Simple_repeat 1 40 0 248 333 75 8 chrX 12108461 12108581 -150491349 - L2 LINE L2 -227 3045 2918 23 0 0 0 chrX 12108682 12108705 -150491225 + AT_rich Low_complexity Low_complexity 1 23 0 2012 128 21 3 chrX 12108801 12109091 -150490839 - AluJb SINE Alu -17 295 1 1780 121 132 53 chrX 12109599 12109616 -150490314 - L1MB7 LINE L1 -31 6153 6139 2067 141 0 3 chrX 12109616 12109913 -150490017 - AluJb SINE Alu -16 296 1 1780 121 132 53 chrX 12109913 12110275 -150489655 - L1MB7 LINE L1 -45 6139 5744 265 163 0 0 chrX 12111710 12111753 -150488177 + L2 LINE L2 3262 3304 -9 450 256 31 8 chrX 12112056 12112185 -150487745 + MIR SINE MIR 7 138 -124 181 283 19 0 chrX 12112638 12112691 -150487239 - L2 LINE L2 0 3272 3219 * 268 288 91 8 chrX 12112674 12112806 -150487124 - MIR SINE MIR -31 231 89 2242 118 0 16 chrX 12113448 12113761 -150486169 - AluSx SINE Alu -4 308 1 21 36 0 0 chrX 12113958 12113986 -150485944 + AT_rich Low_complexity Low_complexity 1 28 0 2121 95 13 36 chrX 12115236 12115540 -150484390 - AluSx SINE Alu -15 297 1 678 193 199 11 chrX 12115903 12116079 -150483851 - MER3 DNA MER1_type 0 209 1 469 237 81 50 chrX 12116130 12116328 -150483602 + L1MC5 LINE L1 7723 7926 -35 1842 155 10 7 chrX 12116881 12117178 -150482752 + AluJo SINE Alu 1 298 -14 232 318 106 0 chrX 12117270 12117355 -150482575 + MIR SINE MIR 6 99 -163 181 105 26 53 chrX 12117395 12117433 -150482497 + MIR SINE MIR 212 248 -14 1843 96 118 0 chrX 12119538 12119810 -150480120 + AluSc SINE Alu 1 304 -5 22 0 0 0 chrX 12121720 12121742 -150478188 + AT_rich Low_complexity Low_complexity 1 22 0 1001 139 32 0 chrX 12121803 12121961 -150477969 + AluSp SINE Alu 137 299 -14 2270 116 0 3 chrX 12122009 12122319 -150477611 + AluSx SINE Alu 1 309 -3 2189 93 21 10 chrX 12122377 12122667 -150477263 + AluSg SINE Alu 1 293 -17 2451 73 7 0 chrX 12122705 12123005 -150476925 + AluSg SINE Alu 1 302 -8 2265 100 7 0 chrX 12124032 12124322 -150475608 + AluSx SINE Alu 1 292 -20 270 0 0 0 chrX 12125876 12125906 -150474024 + (A)n Simple_repeat Simple_repeat 1 30 0 2237 98 11 0 chrX 12126301 12126588 -150473342 + AluSq SINE Alu 1 290 -23 2114 172 102 19 chrX 12126613 12127043 -150472887 + MLT1C LTR MaLR 1 466 -1 2164 127 0 3 chrX 12127715 12128014 -150471916 + AluSx SINE Alu 1 298 -14 2056 141 0 3 chrX 12129585 12129884 -150470046 + AluJb SINE Alu 1 298 -14 801 271 45 0 chrX 12130043 12130264 -150469666 + MIR SINE MIR 25 255 -7 664 212 7 0 chrX 12130661 12130798 -150469132 + MER58B DNA MER1_type 196 333 -8 234 0 0 0 chrX 12131050 12131076 -150468854 + (A)n Simple_repeat Simple_repeat 1 26 0 780 145 172 59 chrX 12131523 12131623 -150468307 + MER3 DNA MER1_type 3 90 -119 2149 72 18 96 chrX 12131623 12131956 -150467974 + AluYb8 SINE Alu 1 307 -11 780 145 172 59 chrX 12131956 12132041 -150467889 + MER3 DNA MER1_type 90 209 0 1810 122 0 0 chrX 12132064 12132309 -150467621 - AluSx SINE Alu -67 245 1 1148 198 61 49 chrX 12132632 12132960 -150466970 + MLT1D LTR MaLR 7 338 -167 31 0 0 0 chrX 12133230 12133261 -150466669 + AT_rich Low_complexity Low_complexity 1 31 0 39417 78 10 9 chrX 12133474 12138468 -150461462 + L1PA6 LINE L1 11 5009 -1145 2273 114 3 0 chrX 12138468 12138776 -150461154 + AluSp SINE Alu 1 309 -4 39417 78 10 9 chrX 12138776 12139923 -150460007 + L1PA6 LINE L1 5009 6154 0 210 372 97 26 chrX 12139930 12140043 -150459887 + L3 LINE CR1 21 141 -1436 199 319 0 28 chrX 12140151 12140223 -150459707 - MIR SINE MIR -10 252 183 361 274 44 9 chrX 12140415 12140528 -150459402 + L2 LINE L2 3191 3307 -6 1231 303 94 61 chrX 12140530 12141263 -150458667 + L3 LINE CR1 520 1284 -293 711 244 52 36 chrX 12141263 12141456 -150458474 + MER117 DNA MER1_type 2 197 0 1231 303 94 61 chrX 12141456 12141528 -150458402 + L3 LINE CR1 1284 1352 -225 1130 188 48 0 chrX 12142933 12143140 -150456790 + MER20 DNA MER1_type 3 219 0 313 251 80 31 chrX 12144774 12144937 -150454993 - L1ME4a LINE L1 -215 5906 5736 202 279 0 0 chrX 12145819 12145862 -150454068 - L2 LINE L2 -19 3253 3211 272 284 42 32 chrX 12145881 12145976 -150453954 - MIR SINE MIR -69 139 44 1364 155 0 9 chrX 12146226 12146439 -150453491 - L1MC1 LINE L1 0 6333 6123 570 68 27 0 chrX 12146439 12146512 -150453418 + Alu SINE Alu 222 296 -16 2018 136 3 0 chrX 12146704 12146990 -150452940 - AluSx SINE Alu -25 287 1 2472 70 0 7 chrX 12148305 12148604 -150451326 + AluSp SINE Alu 1 297 -16 186 167 0 0 chrX 12148858 12148894 -150451036 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 774 209 124 0 chrX 12149082 12149259 -150450671 + MER3 DNA MER1_type 2 200 -9 2323 97 0 0 chrX 12149352 12149650 -150450280 + AluSx SINE Alu 1 298 -14 2322 71 3 14 chrX 12149698 12149993 -150449937 + AluSc SINE Alu 1 292 -17 1728 188 58 54 chrX 12150410 12150858 -150449072 - LTR7 LTR ERV1 0 450 1 1698 182 30 62 chrX 12150951 12151364 -150448566 + L1M4 LINE L1 4775 5175 -971 2045 123 7 7 chrX 12151364 12151665 -150448265 - AluSx SINE Alu -11 301 1 1698 182 30 62 chrX 12151665 12151690 -150448240 + L1M4 LINE L1 5175 5199 -947 618 124 261 33 chrX 12151697 12151850 -150448080 + L1MC3 LINE L1 6093 6280 -1505 486 247 156 53 chrX 12152194 12152644 -150447286 - L1ME LINE L1 -342 5779 5272 1909 139 10 27 chrX 12152848 12153149 -150446781 + AluJo SINE Alu 1 296 -16 288 310 133 0 chrX 12153736 12153849 -150446081 - MIR SINE MIR -58 150 23 345 291 109 27 chrX 12154046 12154088 -150445842 - L1ME4a LINE L1 0 6121 6084 1585 158 77 0 chrX 12154088 12154385 -150445545 - MER33 DNA MER1_type 0 324 5 345 291 109 27 chrX 12154385 12154562 -150445368 - L1ME4a LINE L1 -37 6084 5884 387 239 58 53 chrX 12154885 12155073 -150444857 - L1MC4 LINE L1 -12 8030 7842 436 311 86 66 chrX 12157160 12157462 -150442468 + L2 LINE L2 2946 3253 -19 1905 145 3 13 chrX 12157679 12157982 -150441948 + AluJb SINE Alu 2 301 -11 359 323 150 0 chrX 12158756 12158923 -150441007 - L3 LINE CR1 -1195 382 191 808 197 0 0 chrX 12159485 12159617 -150440313 - FLAM_A SINE Alu -1 132 1 2065 124 10 16 chrX 12160393 12160699 -150439231 + AluSq SINE Alu 1 304 -9 254 286 32 0 chrX 12161136 12161199 -150438731 + L2 LINE L2 3205 3269 -3 27 29 0 0 chrX 12162409 12162443 -150437487 + AT_rich Low_complexity Low_complexity 1 34 0 2493 64 0 0 chrX 12162826 12163122 -150436808 - AluY SINE Alu -15 296 1 2206 95 31 7 chrX 12163255 12163549 -150436381 - AluSx SINE Alu -11 301 1 317 285 171 13 chrX 12164272 12164430 -150435500 + MIR SINE MIR 21 203 -59 2125 121 3 13 chrX 12164788 12165095 -150434835 - AluSx SINE Alu -8 304 1 315 213 27 27 chrX 12165756 12165831 -150434099 + LTR33 LTR ERVL 79 153 -368 537 230 173 58 chrX 12167659 12167885 -150432045 + MIR SINE MIR 8 259 -3 283 301 158 0 chrX 12168312 12168445 -150431485 + MIR SINE MIR 26 180 -61 883 226 23 81 chrX 12168480 12168741 -150431189 - MER46C DNA MER2_type -88 250 5 183 255 43 0 chrX 12168767 12168814 -150431116 + MIR SINE MIR 213 261 -1 207 0 0 0 chrX 12170746 12170769 -150429161 + (T)n Simple_repeat Simple_repeat 1 23 0 230 203 25 89 chrX 12170959 12171038 -150428892 + MIR SINE MIR 153 226 -36 2073 113 0 32 chrX 12171602 12171911 -150428019 - AluSx SINE Alu -13 299 1 198 188 42 21 chrX 12172076 12172124 -150427806 + MIR3 SINE MIR 135 183 -25 21 0 0 0 chrX 12173122 12173143 -150426787 + AT_rich Low_complexity Low_complexity 1 21 0 1486 169 63 106 chrX 12178434 12178813 -150421117 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chrX 12180222 12180245 -150419685 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chrX 12182795 12182821 -150417109 + (T)n Simple_repeat Simple_repeat 1 26 0 3436 188 27 8 chrX 12184047 12184675 -150415255 - MER82 DNA MER2_type 0 653 14 567 283 12 18 chrX 12185282 12185448 -150414482 + MER5B DNA MER1_type 14 178 0 377 230 0 0 chrX 12185991 12186065 -150413865 - MER116 DNA Mariner -4 76 3 642 188 146 83 chrX 12186664 12186892 -150413038 + MER5C DNA MER1_type 16 267 -57 2140 108 7 3 chrX 12186892 12187189 -150412741 - AluSg1 SINE Alu -11 298 1 642 188 146 83 chrX 12187189 12187248 -150412682 + MER5C DNA MER1_type 267 321 -3 269 236 0 0 chrX 12189101 12189156 -150410774 - MIR SINE MIR -86 122 68 3783 108 28 51 chrX 12190145 12190756 -150409174 + MER4A LTR ERV1 4 600 0 948 93 0 14 chrX 12191489 12191629 -150408301 + AluSg/x SINE Alu 175 312 0 444 213 0 0 chrX 12191629 12191704 -150408226 - MER58 DNA MER1_type -140 75 1 188 336 69 69 chrX 12191707 12191823 -150408107 + L2 LINE L2 3151 3266 -6 380 317 54 7 chrX 12192605 12192772 -150407158 - MIR SINE MIR -62 146 15 711 174 81 12 chrX 12192988 12193149 -150406781 - MER5B DNA MER1_type -5 173 2 1996 116 0 43 chrX 12194126 12194429 -150405501 - AluSx SINE Alu -22 290 1 189 293 28 57 chrX 12194802 12194908 -150405022 - MIR SINE MIR -96 166 64 252 0 0 0 chrX 12195883 12195911 -150404019 + (A)n Simple_repeat Simple_repeat 1 28 0 1645 89 0 5 chrX 12196197 12196411 -150403519 + AluY SINE Alu 82 294 -17 1031 144 44 0 chrX 12196782 12196963 -150402967 - MER3 DNA MER1_type 0 209 21 292 300 20 20 chrX 12198233 12198333 -150401597 - L2 LINE L2 -466 2848 2749 2557 62 0 0 chrX 12198335 12198644 -150401286 + AluY SINE Alu 1 309 -2 1777 151 3 31 chrX 12198679 12198995 -150400935 - AluJo SINE Alu 0 308 1 474 236 164 36 chrX 12199190 12199355 -150400575 + MER5A DNA MER1_type 3 188 -1 1410 149 5 5 chrX 12200047 12200268 -150399662 - AluSg/x SINE Alu -7 303 83 201 74 0 0 chrX 12200718 12200745 -150399185 + (CA)n Simple_repeat Simple_repeat 1 27 0 1204 199 9 0 chrX 12200986 12201202 -150398728 + MER20 DNA MER1_type 2 219 0 1250 137 13 44 chrX 12201235 12201438 -150398492 + MER20 DNA MER1_type 1 198 -21 3681 108 35 52 chrX 12201438 12201461 -150398469 + MER4B LTR ERV1 1 23 -587 2398 87 0 0 chrX 12201461 12201760 -150398170 + AluSc SINE Alu 1 299 -10 3681 108 35 52 chrX 12201760 12202356 -150397574 + MER4B LTR ERV1 23 610 0 1250 137 13 44 chrX 12202356 12202378 -150397552 + MER20 DNA MER1_type 198 219 0 680 204 0 77 chrX 12202494 12202675 -150397255 + MER5B DNA MER1_type 1 167 -11 1217 183 131 51 chrX 12202685 12202997 -150396933 + MER58B DNA MER1_type 5 341 0 817 197 0 0 chrX 12203028 12203170 -150396760 - AluSg/x SINE Alu -14 298 157 5424 202 74 34 chrX 12203307 12204575 -150395355 + Charlie1a DNA MER1_type 5 1335 -1426 2081 118 3 64 chrX 12204575 12204760 -150395170 - AluSx SINE Alu -2 310 152 2386 85 7 0 chrX 12204760 12205066 -150394864 - AluSp SINE Alu -5 308 1 2081 118 3 64 chrX 12205066 12205210 -150394720 - AluSx SINE Alu -160 152 1 5424 202 74 34 chrX 12205210 12205335 -150394595 + Charlie1a DNA MER1_type 1335 1454 -1 350 304 122 23 chrX 12206763 12206977 -150392953 + L1ME1 LINE L1 5927 6161 -5 697 101 62 39 chrX 12207603 12207732 -150392198 - MER20 DNA MER1_type 0 219 88 678 114 69 80 chrX 12207776 12207951 -150391979 - MER5B DNA MER1_type 0 178 6 1709 95 0 76 chrX 12208042 12208305 -150391625 - AluSg/x SINE Alu 0 312 70 1446 238 111 65 chrX 12208734 12209301 -150390629 + MLT1E LTR MaLR 1 593 0 335 224 70 90 chrX 12209576 12209687 -150390243 - MER5A DNA MER1_type 0 189 80 851 152 0 0 chrX 12209687 12209812 -150390118 - FLAM_A SINE Alu -5 128 4 335 224 70 90 chrX 12209812 12209856 -150390074 - MER5A DNA MER1_type -109 80 37 829 205 82 0 chrX 12210319 12210490 -150389440 - MER58A DNA MER1_type 0 224 40 34 0 0 0 chrX 12211378 12211412 -150388518 + AT_rich Low_complexity Low_complexity 1 34 0 559 224 164 0 chrX 12212907 12213059 -150386871 - MER5A DNA MER1_type -3 186 10 25 0 0 0 chrX 12213255 12213280 -150386650 + GC_rich Low_complexity Low_complexity 1 25 0 186 118 0 0 chrX 12213631 12213665 -150386265 + (A)n Simple_repeat Simple_repeat 1 34 0 398 241 124 71 chrX 12214095 12214377 -150385553 + MER46C DNA MER2_type 5 301 -37 2046 192 27 2 chrX 12214838 12215239 -150384691 - L1MB7 LINE L1 0 6184 5774 252 198 30 59 chrX 12216228 12216329 -150383601 + GA-rich Low_complexity Low_complexity 2 99 0 182 219 0 0 chrX 12217357 12217398 -150382532 + L2 LINE L2 3265 3305 -8 662 307 28 20 chrX 12217874 12218125 -150381805 - MIR SINE MIR -1 261 9 2191 94 0 88 chrX 12218335 12218496 -150381434 + AluSx SINE Alu 1 120 -192 2158 121 0 38 chrX 12218496 12218810 -150381120 + AluSq SINE Alu 1 302 -11 2191 94 0 88 chrX 12218810 12218979 -150380951 + AluSx SINE Alu 120 302 -10 195 42 0 0 chrX 12219586 12219610 -150380320 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chrX 12219776 12219804 -150380126 + AT_rich Low_complexity Low_complexity 1 28 0 1007 220 6 0 chrX 12220380 12220562 -150379368 + MER58A DNA MER1_type 42 224 0 2505 67 0 13 chrX 12220881 12221193 -150378737 - AluY SINE Alu -2 309 2 24 96 0 0 chrX 12222109 12222182 -150377748 + AT_rich Low_complexity Low_complexity 1 73 0 397 145 120 8 chrX 12224408 12224497 -150375433 + L1MB3 LINE L1 6096 6183 0 446 171 0 0 chrX 12224585 12224661 -150375269 - MER116 DNA Mariner -2 78 3 22 0 0 0 chrX 12225385 12225407 -150374523 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chrX 12226143 12226167 -150373763 + (TC)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chrX 12226511 12226532 -150373398 + AT_rich Low_complexity Low_complexity 1 21 0 231 209 179 0 chrX 12228378 12228445 -150371485 + MER116 DNA Mariner 1 79 -1 560 304 79 25 chrX 12229418 12229698 -150370232 + L2 LINE L2 3016 3310 -3 587 297 74 19 chrX 12230078 12230334 -150369596 - L3 LINE CR1 -720 857 588 204 182 0 0 chrX 12230348 12230392 -150369538 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2412 86 7 0 chrX 12230433 12230736 -150369194 - AluSp SINE Alu -8 305 1 204 390 38 0 chrX 12230759 12230864 -150369066 - L3 LINE CR1 -1024 553 445 2165 106 3 35 chrX 12231205 12231517 -150368413 - AluSx SINE Alu -10 302 1 2166 114 14 0 chrX 12232362 12232659 -150367271 - AluSx SINE Alu -11 301 1 1068 178 58 5 chrX 12232901 12233109 -150366821 - MER20 DNA MER1_type 0 219 1 650 214 38 19 chrX 12233168 12233327 -150366603 - MER5B DNA MER1_type -1 177 16 2020 160 89 49 chrX 12233625 12234074 -150365856 - MLT1C LTR MaLR 0 467 1 1694 164 29 7 chrX 12235263 12235387 -150364543 + AluJo SINE Alu 1 121 -191 348 24 0 0 chrX 12235387 12235428 -150364502 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1694 164 29 7 chrX 12235428 12235578 -150364352 + AluJo SINE Alu 121 281 -31 1101 153 23 0 chrX 12236113 12236290 -150363640 - FRAM SINE Alu -1 175 1 2366 122 72 12 chrX 12236998 12237401 -150362529 + MSTC LTR MaLR 1 427 -1 189 276 16 57 chrX 12237694 12237817 -150362113 - MIR SINE MIR -115 147 30 224 333 13 0 chrX 12238131 12238209 -150361721 + MIR SINE MIR 105 183 -79 198 0 0 0 chrX 12238701 12238723 -150361207 + (T)n Simple_repeat Simple_repeat 1 22 0 4796 195 71 2 chrX 12238768 12239739 -150360191 + MER45B DNA AcHobo 1 1038 -2 441 0 0 0 chrX 12240019 12240068 -150359862 + (CA)n Simple_repeat Simple_repeat 2 50 0 230 297 0 31 chrX 12240175 12240257 -150359673 + MIR SINE MIR 34 106 -102 22 80 0 0 chrX 12240885 12240935 -150358995 + AT_rich Low_complexity Low_complexity 1 50 0 185 256 0 0 chrX 12241115 12241154 -150358776 + MER5A DNA MER1_type 150 188 -1 607 178 10 0 chrX 12241826 12241927 -150358003 + FRAM SINE Alu 1 101 -75 303 296 112 26 chrX 12242109 12242261 -150357669 + L3 LINE CR1 354 518 -1059 1756 139 19 52 chrX 12242274 12242583 -150357347 + AluJo SINE Alu 1 299 -13 199 320 0 26 chrX 12242673 12242751 -150357179 + L3 LINE CR1 556 631 -946 258 361 0 0 chrX 12243726 12243798 -150356132 - L2 LINE L2 0 3272 3201 306 293 54 7 chrX 12244366 12244513 -150355417 + MIR SINE MIR 93 246 -16 22 35 0 0 chrX 12245398 12245427 -150354503 + AT_rich Low_complexity Low_complexity 1 29 0 198 103 0 0 chrX 12246959 12246988 -150352942 + (A)n Simple_repeat Simple_repeat 1 29 0 2674 126 31 62 chrX 12247703 12248349 -150351581 + MER4D LTR ERV1 1 896 -7 1153 235 76 9 chrX 12248604 12248945 -150350985 + L1M4 LINE L1 4566 4929 -1217 180 306 46 37 chrX 12249239 12249347 -150350583 + L2 LINE L2 3155 3263 -9 227 333 0 0 chrX 12249655 12249718 -150350212 + (TATG)n Simple_repeat Simple_repeat 1 63 0 266 292 42 17 chrX 12249823 12249943 -150349987 + (CATG)n Simple_repeat Simple_repeat 4 126 0 231 153 69 0 chrX 12249947 12250019 -150349911 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 212 291 18 0 chrX 12250173 12250228 -150349702 + MIR SINE MIR 56 111 -151 748 184 8 8 chrX 12251440 12251565 -150348365 + FLAM_C SINE Alu 2 126 -17 21 36 0 0 chrX 12251565 12251593 -150348337 + AT_rich Low_complexity Low_complexity 1 28 0 3747 159 90 44 chrX 12251749 12253137 -150346793 - L1MB8 LINE L1 0 6178 4742 2373 107 0 0 chrX 12253821 12254131 -150345799 - AluSx SINE Alu -2 310 1 211 255 0 0 chrX 12255040 12255091 -150344839 + (CCCA)n Simple_repeat Simple_repeat 1 51 0 2391 81 0 10 chrX 12255321 12255629 -150344301 - AluY SINE Alu -1 310 6 180 0 0 0 chrX 12255632 12255652 -150344278 + (T)n Simple_repeat Simple_repeat 1 20 0 265 311 59 8 chrX 12256668 12256787 -150343143 - L2 LINE L2 -321 2951 2827 1272 285 56 17 chrX 12256839 12257249 -150342681 + LTR16A LTR ERVL 25 450 0 1659 221 137 6 chrX 12257394 12257965 -150341965 + L1ME2 LINE L1 5436 5944 -220 238 307 39 71 chrX 12258023 12258150 -150341780 - L2 LINE L2 -684 2630 2508 2086 129 3 0 chrX 12258619 12258914 -150341016 + AluSx SINE Alu 1 296 -16 2754 116 47 24 chrX 12258925 12259347 -150340583 + MSTB1 LTR MaLR 1 432 0 243 342 153 5 chrX 12259418 12259608 -150340322 + MIR SINE MIR 5 222 -40 2355 102 3 0 chrX 12259723 12260026 -150339904 + AluSx SINE Alu 1 304 -8 705 307 48 4 chrX 12260093 12260324 -150339606 + MIR SINE MIR 21 261 -1 988 199 56 5 chrX 12260923 12261119 -150338811 - MER58A DNA MER1_type -3 221 16 339 202 128 64 chrX 12261385 12261588 -150338342 - L1MC4a LINE L1 -1885 5923 5708 1153 126 0 40 chrX 12261615 12261789 -150338141 - FRAM SINE Alu -12 164 1 611 265 29 19 chrX 12261790 12261986 -150337944 - L1MC4a LINE L1 -469 5652 5497 1597 219 87 61 chrX 12262031 12262163 -150337767 - MER68 LTR ERV1 -10 552 425 2122 120 43 0 chrX 12262163 12262462 -150337468 + AluSx SINE Alu 1 312 0 1597 219 87 61 chrX 12262462 12262867 -150337063 - MER68 LTR ERV1 -137 425 1 1528 124 58 0 chrX 12263401 12263643 -150336287 + L1MA5A LINE L1 6038 6293 -4 1111 238 63 17 chrX 12263725 12263868 -150336062 - L1ME3A LINE L1 -1 6169 6034 2274 106 0 0 chrX 12263868 12264160 -150335770 - AluSx SINE Alu -20 292 1 1111 238 63 17 chrX 12264160 12264420 -150335510 - L1ME3A LINE L1 -136 6034 5709 485 217 29 86 chrX 12264454 12264629 -150335301 - L1ME3 LINE L1 -2 6162 5998 374 236 149 7 chrX 12264702 12264839 -150335091 + MIR3 SINE MIR 38 194 -14 424 316 96 43 chrX 12264881 12265090 -150334840 - L3b LINE CR1 -244 1339 1120 459 261 163 7 chrX 12265204 12265357 -150334573 + MER5A DNA MER1_type 10 186 -3 2808 166 21 48 chrX 12265393 12265534 -150334396 - MLT1D LTR MaLR -2 503 360 1518 130 9 0 chrX 12265534 12265757 -150334173 - AluJo SINE Alu -3 309 85 2808 166 21 48 chrX 12265757 12266132 -150333798 - MLT1D LTR MaLR -145 360 1 192 337 48 12 chrX 12266334 12266417 -150333513 - MIR3 SINE MIR -3 205 120 322 281 172 8 chrX 12266583 12266711 -150333219 - L2 LINE L2 -1 3312 3164 468 272 40 50 chrX 12267178 12267380 -150332550 + MER63A DNA MER1_type 1 200 -10 2004 215 50 21 chrX 12267917 12268436 -150331494 - L1ME1 LINE L1 -1 6165 5628 306 258 218 0 chrX 12268458 12268582 -150331348 - MIR SINE MIR -70 192 42 * 321 247 157 0 chrX 12268576 12268665 -150331265 + MIR SINE MIR 159 261 -1 2734 77 14 3 chrX 12269479 12269831 -150330099 - L1PB1 LINE L1 -1 6150 5795 742 193 12 6 chrX 12269844 12270015 -150329915 + (CATA)n Simple_repeat Simple_repeat 1 172 0 2246 97 13 0 chrX 12270017 12270326 -150329604 - L1PB1 LINE L1 -360 5791 5479 235 85 43 0 chrX 12271019 12271066 -150328864 + (CAA)n Simple_repeat Simple_repeat 1 49 0 1856 153 13 33 chrX 12271531 12271838 -150328092 - AluJb SINE Alu -11 301 1 2082 123 54 0 chrX 12273654 12273971 -150325959 - MER44D DNA MER2_type -5 604 1 213 324 14 0 chrX 12274094 12274165 -150325765 + MIR SINE MIR 119 190 -72 1216 175 30 105 chrX 12274291 12274623 -150325307 + AluJb SINE Alu 1 307 -5 2846 131 32 53 chrX 12274670 12274923 -150325007 + L1MA6 LINE L1 5779 6036 -264 2502 49 3 0 chrX 12274923 12275211 -150324719 + AluSp SINE Alu 1 289 -24 2846 131 32 53 chrX 12275211 12275483 -150324447 + L1MA6 LINE L1 6036 6293 -7 32 26 0 0 chrX 12275483 12275522 -150324408 + AT_rich Low_complexity Low_complexity 1 39 0 496 322 131 69 chrX 12275709 12275955 -150323975 + L3 LINE CR1 174 403 -1174 2049 142 0 0 chrX 12275955 12276250 -150323680 - AluJo SINE Alu -16 296 2 496 322 131 69 chrX 12276250 12276760 -150323170 + L3 LINE CR1 403 977 -600 228 67 0 0 chrX 12277031 12277061 -150322869 + (TG)n Simple_repeat Simple_repeat 1 30 0 2081 178 40 33 chrX 12277895 12278350 -150321580 + L1MB7 LINE L1 5716 6173 -11 2847 193 11 18 chrX 12278512 12279072 -150320858 - L1MD3 LINE L1 0 7995 7440 236 333 0 0 chrX 12279105 12279171 -150320759 - L2 LINE L2 -1 3312 3247 267 318 18 18 chrX 12279171 12279281 -150320649 - MER5B DNA MER1_type 0 178 69 215 270 22 79 chrX 12279202 12279291 -150320639 + MER5A DNA MER1_type 43 126 -63 * 1234 166 29 5 chrX 12279703 12279965 -150319965 + AluJo SINE Alu 73 339 0 618 224 29 53 chrX 12280160 12280330 -150319600 - MER5B DNA MER1_type -8 170 5 457 280 172 6 chrX 12280350 12280507 -150319423 + MER5A DNA MER1_type 7 189 0 697 200 8 0 chrX 12280559 12280689 -150319241 - MER3 DNA MER1_type -78 131 1 2131 124 10 3 chrX 12281005 12281311 -150318619 - AluJb SINE Alu -4 308 1 523 189 11 0 chrX 12281318 12281413 -150318517 + MER94 DNA DNA 36 131 -3 343 263 0 0 chrX 12281728 12281808 -150318122 - MER96 DNA MER1_type? -94 81 2 615 326 30 21 chrX 12282166 12282287 -150317643 + MIR SINE MIR 21 139 -123 813 167 35 0 chrX 12282287 12282431 -150317499 + L1MB5 LINE L1 6025 6173 -1 615 326 30 21 chrX 12282431 12282545 -150317385 + MIR SINE MIR 139 258 -4 292 266 0 51 chrX 12283158 12283237 -150316693 - L2 LINE L2 -8 3264 3190 2120 123 0 38 chrX 12283262 12283578 -150316352 + AluSx SINE Alu 6 309 -3 224 265 133 5 chrX 12283587 12283701 -150316229 + MIR SINE MIR 20 192 -70 3506 155 24 16 chrX 12284304 12284884 -150315046 + L1MB5 LINE L1 5582 6166 -8 1851 159 10 16 chrX 12286384 12286693 -150313237 + AluJb SINE Alu 3 309 -3 435 246 40 23 chrX 12286754 12286929 -150313001 - L1MC5 LINE L1 -224 7737 7560 260 333 125 7 chrX 12287309 12287453 -150312477 - MIR SINE MIR -7 255 95 2198 175 67 48 chrX 12287453 12287949 -150311981 + MLT1D LTR MaLR 1 505 0 990 114 103 29 chrX 12288595 12288770 -150311160 - MER5A DNA MER1_type 0 189 2 535 291 115 63 chrX 12289179 12289235 -150310695 + L2 LINE L2 2650 2702 -570 2504 57 0 3 chrX 12289235 12289533 -150310397 + AluY SINE Alu 1 297 -14 535 291 115 63 chrX 12289533 12290021 -150309909 + L2 LINE L2 2702 3223 -49 1887 149 3 7 chrX 12290072 12290368 -150309562 + AluJo SINE Alu 3 297 -15 632 282 64 20 chrX 12290441 12290586 -150309344 - MIR SINE MIR -34 228 70 558 125 0 0 chrX 12290586 12290666 -150309264 - MADE1 DNA Mariner 0 80 1 632 282 64 20 chrX 12290666 12290722 -150309208 - MIR SINE MIR -192 70 18 909 189 109 0 chrX 12291044 12291245 -150308685 + MER33 DNA MER1_type 1 223 -101 1648 159 45 21 chrX 12291246 12291536 -150308394 + AluJo SINE Alu 1 297 -15 632 282 64 20 chrX 12291609 12291754 -150308176 - MIR SINE MIR -34 228 70 558 125 0 0 chrX 12291754 12291834 -150308096 - MADE1 DNA Mariner 0 80 1 632 282 64 20 chrX 12291834 12291890 -150308040 - MIR SINE MIR -192 70 18 995 147 91 141 chrX 12292212 12292414 -150307516 + MER33 DNA MER1_type 1 212 -2373 1780 143 44 20 chrX 12292414 12292708 -150307222 + AluJo SINE Alu 1 301 -11 995 147 91 141 chrX 12292708 12292737 -150307193 + MER33 DNA MER1_type 212 241 -2344 2234 98 0 7 chrX 12292737 12293033 -150306897 + AluSg SINE Alu 1 294 -16 995 147 91 141 chrX 12293033 12293141 -150306789 + MER33 DNA MER1_type 241 324 0 207 0 0 0 chrX 12295561 12295584 -150304346 + (A)n Simple_repeat Simple_repeat 1 23 0 2073 136 0 7 chrX 12295665 12295960 -150303970 - AluSx SINE Alu -19 293 1 751 244 20 5 chrX 12296539 12296727 -150303203 + MER5B DNA MER1_type 3 178 0 445 245 55 55 chrX 12297866 12298029 -150301901 + MER5B DNA MER1_type 1 163 -15 558 317 11 16 chrX 12298201 12298387 -150301543 - L2 LINE L2 -11 3302 3118 627 153 153 68 chrX 12298486 12298663 -150301267 - L1MB3 LINE L1 0 6183 5992 206 254 16 16 chrX 12298683 12298746 -150301184 - MIR3 SINE MIR -25 183 121 4423 61 53 0 chrX 12298829 12299355 -150300575 + MER41A LTR ERV1 1 554 0 828 175 94 0 chrX 12299442 12299613 -150300317 - MER20 DNA MER1_type 0 219 33 954 180 6 0 chrX 12299761 12299922 -150300008 + MER5B DNA MER1_type 17 178 0 561 93 0 70 chrX 12299931 12300017 -150299913 + MADE1 DNA Mariner 1 80 0 508 193 187 21 chrX 12300021 12300177 -150299753 + MER5A DNA MER1_type 4 189 0 207 0 0 0 chrX 12300271 12300294 -150299636 + (CAA)n Simple_repeat Simple_repeat 2 24 0 483 92 0 0 chrX 12301223 12301288 -150298642 + MADE1 DNA Mariner 16 80 0 762 189 15 8 chrX 12301404 12301536 -150298394 - FLAM_A SINE Alu 0 133 1 1194 155 122 20 chrX 12301635 12301880 -150298050 + AluJo SINE Alu 22 291 -21 463 216 45 0 chrX 12301887 12301975 -150297955 - MER58 DNA MER1_type -249 92 1 1546 146 18 58 chrX 12304703 12304977 -150294953 + AluJo SINE Alu 1 263 -49 234 152 0 0 chrX 12304977 12305010 -150294920 - Alu SINE Alu -53 113 81 268 233 0 0 chrX 12305343 12305403 -150294527 - MER116 DNA Mariner 0 80 21 2307 92 0 20 chrX 12305403 12305709 -150294221 - AluSx SINE Alu -12 300 1 1352 138 43 5 chrX 12306984 12307194 -150292736 - MER20 DNA MER1_type -1 218 1 476 218 238 14 chrX 12307271 12307418 -150292512 + MER5A DNA MER1_type 9 188 -1 592 236 25 70 chrX 12307814 12307970 -150291960 + MER106A DNA MER1_type 1 144 -92 2362 96 16 0 chrX 12307970 12308273 -150291657 + AluSx SINE Alu 1 308 -4 592 236 25 70 chrX 12308273 12308358 -150291572 + MER106A DNA MER1_type 144 231 -5 248 318 191 12 chrX 12308557 12308730 -150291200 + MIR SINE MIR 56 259 -3 183 163 70 23 chrX 12309831 12309874 -150290056 + MIR SINE MIR 82 126 -82 540 259 42 48 chrX 12312151 12312340 -150287590 - MIR SINE MIR 0 262 75 1482 175 71 62 chrX 12312852 12313304 -150286626 - Charlie4a DNA MER1_type -27 481 26 318 270 30 20 chrX 12313381 12313481 -150286449 + MER58 DNA MER1_type 171 271 -2149 286 152 0 0 chrX 12313478 12313524 -150286406 + MER58 DNA MER1_type 2374 2419 -1 * 2091 150 13 0 chrX 12313795 12314102 -150285828 + AluJo SINE Alu 2 312 0 286 304 161 18 chrX 12316112 12316224 -150283706 - MIR SINE MIR -122 140 13 2228 84 49 0 chrX 12316243 12316530 -150283400 + AluSq SINE Alu 1 301 -12 661 147 0 0 chrX 12316957 12317052 -150282878 + L1MC1 LINE L1 6221 6315 -18 2542 198 45 11 chrX 12317076 12317611 -150282319 + L1MD3 LINE L1 7434 7986 -9 563 151 0 59 chrX 12317818 12317937 -150281993 - L1MC3 LINE L1 -8 7777 7666 2178 121 7 13 chrX 12317962 12318269 -150281661 - AluSx SINE Alu -7 305 1 243 114 23 0 chrX 12318270 12318314 -150281616 - L1MC3 LINE L1 -101 7684 7640 639 318 27 5 chrX 12318442 12318665 -150281265 - MIR SINE MIR -22 240 13 281 331 167 33 chrX 12318650 12318949 -150280981 - L3 LINE CR1 -624 953 615 * 937 167 24 0 chrX 12319061 12319229 -150280701 + MER5B DNA MER1_type 7 178 0 483 283 182 0 chrX 12319820 12320018 -150279912 - MIR SINE MIR -26 236 3 670 245 101 11 chrX 12320235 12320423 -150279507 + MER3 DNA MER1_type 5 209 0 185 229 0 86 chrX 12320922 12320992 -150278938 - MIR3 SINE MIR -53 155 92 216 97 0 0 chrX 12321979 12322010 -150277920 + (TCTG)n Simple_repeat Simple_repeat 1 31 0 1765 155 7 18 chrX 12322010 12322294 -150277636 - AluJb SINE Alu -31 281 1 1990 149 0 0 chrX 12322605 12322893 -150277037 - AluJb SINE Alu -24 288 1 1241 261 118 8 chrX 12323096 12323494 -150276436 + MLT1J LTR MaLR 1 442 -69 2034 140 3 16 chrX 12323827 12324142 -150275788 + AluJo SINE Alu 1 311 -1 337 239 90 4 chrX 12324359 12324520 -150275410 + MIR SINE MIR 16 252 -10 217 188 21 21 chrX 12324528 12324576 -150275354 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 202 122 20 41 chrX 12324645 12324694 -150275236 + (TATG)n Simple_repeat Simple_repeat 2 49 0 369 0 0 0 chrX 12325505 12325546 -150274384 + (TG)n Simple_repeat Simple_repeat 2 42 0 1961 162 0 3 chrX 12325771 12326068 -150273862 + AluJb SINE Alu 1 296 -16 295 182 91 52 chrX 12326997 12327074 -150272856 + L2 LINE L2 3141 3220 -52 2622 137 49 5 chrX 12327406 12327814 -150272116 - MSTA LTR MaLR 0 428 3 2278 102 3 13 chrX 12328823 12329138 -150270792 + AluSx SINE Alu 1 312 0 252 250 14 0 chrX 12329255 12329327 -150270603 - MER116 DNA Mariner -7 73 1 2503 67 0 0 chrX 12329451 12329750 -150270180 + AluY SINE Alu 1 299 -12 2046 193 37 43 chrX 12330229 12330423 -150269507 - MER66B LTR ERV1 -27 459 265 2292 88 0 10 chrX 12330423 12330718 -150269212 - AluSg SINE Alu -18 292 1 2046 193 37 43 chrX 12330718 12330985 -150268945 - MER66B LTR ERV1 -221 265 1 1316 132 0 32 chrX 12331009 12331228 -150268702 - MER20 DNA MER1_type -4 215 4 2235 110 3 3 chrX 12331735 12332034 -150267896 + AluSq SINE Alu 1 299 -14 1835 155 10 13 chrX 12333133 12333442 -150266488 - AluJo SINE Alu -4 308 1 1428 169 71 4 chrX 12334179 12334434 -150265496 - AluJo SINE Alu -16 296 25 820 294 53 61 chrX 12334525 12334614 -150265316 + L1ME3A LINE L1 4487 4575 -1571 2425 65 0 3 chrX 12334614 12334908 -150265022 + AluY SINE Alu 1 293 -18 820 294 53 61 chrX 12334908 12334996 -150264934 + L1ME3A LINE L1 4575 4662 -1484 2200 53 0 25 chrX 12334996 12335279 -150264651 + AluY SINE Alu 34 309 -2 820 294 53 61 chrX 12335279 12335930 -150264000 + L1ME3A LINE L1 4662 5309 -837 580 234 59 36 chrX 12335941 12336163 -150263767 + L1ME3A LINE L1 5353 5579 -663 904 220 140 11 chrX 12336926 12337190 -150262740 + L1ME3A LINE L1 5868 6165 -5 1041 161 31 36 chrX 12338486 12338678 -150261252 + MER20 DNA MER1_type 29 219 0 776 234 64 67 chrX 12339099 12339174 -150260756 + L1M4 LINE L1 3230 3304 -2842 2511 67 0 0 chrX 12339174 12339472 -150260458 + AluY SINE Alu 1 298 -13 776 234 64 67 chrX 12339472 12339738 -150260192 + L1M4 LINE L1 3304 3570 -2576 2064 131 10 3 chrX 12339743 12340041 -150259889 + AluSx SINE Alu 1 300 -12 2156 72 65 0 chrX 12340082 12340359 -150259571 + AluY SINE Alu 17 311 0 22 0 0 0 chrX 12340359 12340381 -150259549 + AT_rich Low_complexity Low_complexity 1 22 0 310 326 104 65 chrX 12340977 12341410 -150258520 + L2 LINE L2 2817 3266 -6 251 309 85 0 chrX 12341991 12342085 -150257845 - L2 LINE L2 -2 3311 3210 354 348 82 13 chrX 12343587 12343745 -150256185 - MIR3 SINE MIR -24 184 16 449 221 193 14 chrX 12343748 12343893 -150256037 + MER5A DNA MER1_type 18 188 -1 1620 161 9 59 chrX 12344058 12344382 -150255548 + AluJo SINE Alu 1 308 -4 1579 133 11 15 chrX 12344784 12345048 -150254882 + L1MB7 LINE L1 5902 6164 -20 370 267 186 74 chrX 12347207 12347762 -150252168 - L1M2 LINE L1 -5761 1088 472 689 151 178 7 chrX 12347972 12348124 -150251806 + MER5B DNA MER1_type 1 178 0 237 83 0 0 chrX 12349207 12349243 -150250687 + (T)n Simple_repeat Simple_repeat 1 36 0 1043 237 69 96 chrX 12349585 12349863 -150250067 + L1ME4a LINE L1 5528 5812 -309 1352 132 4 40 chrX 12349863 12350090 -150249840 + MER20 DNA MER1_type 1 219 0 1043 237 69 96 chrX 12350090 12350273 -150249657 + L1ME4a LINE L1 5812 5972 -149 1191 214 85 58 chrX 12350273 12350707 -150249223 + MLT1J1 LTR MaLR 1 446 0 1043 237 69 96 chrX 12350707 12350851 -150249079 + L1ME4a LINE L1 5972 6118 -3 1945 154 10 7 chrX 12350954 12351260 -150248670 + AluJb SINE Alu 1 307 -5 282 140 0 0 chrX 12351342 12351392 -150248538 - Alu SINE Alu -4 297 248 2158 118 0 7 chrX 12351344 12351640 -150248290 - AluSg SINE Alu -16 294 1 947 138 73 82 chrX 12351653 12351795 -150248135 - L1MA9 LINE L1 0 6312 6170 330 26 0 0 chrX 12351795 12351834 -150248096 + (TG)n Simple_repeat Simple_repeat 2 40 0 947 138 73 82 chrX 12351834 12351863 -150248067 - L1MA9 LINE L1 -142 6170 6142 1641 135 42 31 chrX 12351863 12352151 -150247779 + AluJb SINE Alu 1 291 -21 947 138 73 82 chrX 12352151 12352210 -150247720 - L1MA9 LINE L1 -170 6142 6083 2489 67 7 0 chrX 12352396 12352696 -150247234 - AluY SINE Alu -9 302 1 348 234 32 70 chrX 12352820 12352914 -150247016 + HAL1b LINE L1 760 847 -501 2059 166 14 8 chrX 12352914 12353281 -150246649 + L1MC1 LINE L1 5965 6333 0 348 234 32 70 chrX 12353281 12353344 -150246586 + HAL1b LINE L1 847 911 -437 302 287 0 0 chrX 12353385 12353472 -150246458 + HAL1 LINE L1 2249 2335 -172 1740 264 114 14 chrX 12353484 12354135 -150245795 - MER20B DNA MER1_type -5 778 63 397 210 45 70 chrX 12354180 12354337 -150245593 + HAL1 LINE L1 2339 2491 -16 7675 35 0 1 chrX 12354353 12355609 -150244321 + L1PA5 LINE L1 4903 6153 -1 346 233 12 0 chrX 12355680 12355766 -150244164 + MIR SINE MIR 127 213 -49 186 395 0 39 chrX 12356803 12356876 -150243054 - MIR3 SINE MIR -75 133 66 1700 157 0 58 chrX 12356876 12357189 -150242741 - AluJo SINE Alu -17 295 1 186 395 0 39 chrX 12357189 12357244 -150242686 - MIR3 SINE MIR -142 66 10 2389 84 3 3 chrX 12357983 12358282 -150241648 - AluY SINE Alu -12 299 1 345 290 157 0 chrX 12358304 12358521 -150241409 - L3 LINE CR1 -6 1571 1321 2135 138 0 0 chrX 12358584 12358881 -150241049 + AluSx SINE Alu 6 302 -10 3756 166 54 7 chrX 12359093 12359793 -150240137 - L1MB5 LINE L1 0 6174 5442 2574 49 0 16 chrX 12359806 12360114 -150239816 - AluY SINE Alu -8 303 1 245 311 180 5 chrX 12360174 12360380 -150239550 + L2 LINE L2 2836 3077 -195 190 259 19 0 chrX 12360564 12360618 -150239312 - L3 LINE CR1 -640 937 883 683 275 152 9 chrX 12360732 12361048 -150238882 + L2 LINE L2 1734 2094 -1220 371 235 118 29 chrX 12361070 12361206 -150238724 + L2 LINE L2 3166 3313 0 429 272 230 21 chrX 12361232 12361467 -150238463 - L3 LINE CR1 -825 752 469 280 248 28 0 chrX 12362236 12362315 -150237615 + MIR SINE MIR 75 154 -73 2280 104 0 0 chrX 12362325 12362622 -150237308 + AluSc SINE Alu 1 297 -12 1522 159 42 4 chrX 12362786 12363050 -150236880 - MLT1A1 LTR MaLR -89 276 3 254 209 90 0 chrX 12363219 12363286 -150236644 + MIR SINE MIR 113 185 -77 2309 119 3 0 chrX 12364531 12364834 -150235096 + AluSx SINE Alu 1 304 -8 190 268 79 55 chrX 12364864 12364991 -150234939 + MIR SINE MIR 51 180 -82 241 258 0 0 chrX 12365240 12365306 -150234624 + (TA)n Simple_repeat Simple_repeat 2 67 0 1094 181 47 0 chrX 12365369 12365601 -150234329 - L1P LINE L1 -2751 3395 3153 1046 88 117 12 chrX 12365601 12365771 -150234159 + L1PA15 LINE L1 5973 6161 -4 198 0 0 0 chrX 12366163 12366185 -150233745 + (T)n Simple_repeat Simple_repeat 1 22 0 2347 119 11 8 chrX 12366501 12366855 -150233075 + THE1A LTR MaLR 1 355 0 527 206 160 0 chrX 12367091 12367222 -150232708 + MER5A DNA MER1_type 26 177 -12 1939 197 85 17 chrX 12367239 12367712 -150232218 - MLT1D LTR MaLR 0 505 1 251 306 45 51 chrX 12367907 12368064 -150231866 - MIR SINE MIR -78 184 29 672 202 143 18 chrX 12368120 12368288 -150231642 - MER5A DNA MER1_type 0 189 1 590 217 70 0 chrX 12368367 12368510 -150231420 - MER5A DNA MER1_type -9 180 28 635 289 119 31 chrX 12368530 12368790 -150231140 - LTR16C LTR ERVL -208 283 1 323 202 307 26 chrX 12368879 12368993 -150230937 + MLT1E2 LTR MaLR 6 151 -503 1242 69 0 0 chrX 12369013 12369158 -150230772 + AluY SINE Alu 153 297 -14 2016 193 56 49 chrX 12369162 12369648 -150230282 + MLT1E2 LTR MaLR 138 626 0 1417 176 87 65 chrX 12369772 12369965 -150229965 + MLT1D LTR MaLR 1 188 -279 2003 135 24 3 chrX 12369965 12370262 -150229668 + AluSx SINE Alu 1 303 -9 180 0 0 0 chrX 12370262 12370282 -150229648 + (GA)n Simple_repeat Simple_repeat 2 21 0 1417 176 87 65 chrX 12370282 12370504 -150229426 + MLT1D LTR MaLR 187 467 0 364 200 242 0 chrX 12371036 12371156 -150228774 + MER5A DNA MER1_type 32 180 -9 1465 102 0 0 chrX 12371156 12371343 -150228587 + AluSg/x SINE Alu 104 290 -22 27 29 0 0 chrX 12371402 12371436 -150228494 + AT_rich Low_complexity Low_complexity 1 34 0 2067 128 0 3 chrX 12371436 12371726 -150228204 - AluJo SINE Alu -23 289 1 365 261 134 14 chrX 12372027 12372169 -150227761 - L1ME LINE L1 -342 5779 5621 4740 139 29 50 chrX 12372665 12373551 -150226379 - L1MB8 LINE L1 -52 6126 5259 210 118 0 0 chrX 12373589 12373623 -150226307 + (TG)n Simple_repeat Simple_repeat 1 34 0 203 267 0 0 chrX 12374786 12374846 -150225084 + T-rich Low_complexity Low_complexity 1 60 0 189 280 27 27 chrX 12374899 12374974 -150224956 - MIR3 SINE MIR -26 182 108 235 358 63 0 chrX 12375002 12375097 -150224833 - MIR SINE MIR -78 130 30 198 0 0 0 chrX 12375855 12375877 -150224053 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 201 245 0 0 chrX 12377137 12377186 -150222744 + GA-rich Low_complexity Low_complexity 2 50 0 539 212 121 42 chrX 12377282 12377447 -150222483 + MER5B DNA MER1_type 1 178 0 988 238 121 59 chrX 12379031 12379577 -150220353 + L1ME4a LINE L1 5539 6118 -3 2494 57 3 0 chrX 12379616 12379917 -150220013 - AluY SINE Alu -9 302 1 812 239 66 61 chrX 12380012 12380104 -150219826 + L2 LINE L2 2631 2721 -592 1991 148 0 10 chrX 12380104 12380415 -150219515 + AluJo SINE Alu 1 308 -4 812 239 66 61 chrX 12380415 12380785 -150219145 + L2 LINE L2 2721 3099 -214 7216 59 0 0 chrX 12380884 12382470 -150217460 - L1PA5 LINE L1 -6 6148 4561 741 266 104 37 chrX 12382969 12383323 -150216607 - L1MC4a LINE L1 -1802 6006 5629 692 255 235 9 chrX 12383475 12383984 -150215946 + L2 LINE L2 2708 3298 -15 2281 118 0 10 chrX 12384336 12384650 -150215280 + AluSx SINE Alu 1 311 -1 747 271 100 37 chrX 12384751 12385351 -150214579 + L1MC/D LINE L1 5125 5764 -765 * 20425 31 2 1 chrX 12385325 12387766 -150212164 + L1P LINE L1 1796 4238 -1908 329 200 0 64 chrX 12387759 12387781 -150212149 + L1ME LINE L1 5720 5742 -379 * 2080 157 0 0 chrX 12387781 12388087 -150211843 + AluSx SINE Alu 1 306 -6 329 200 0 64 chrX 12388087 12388174 -150211756 + L1ME LINE L1 5742 5822 -299 1124 71 5 27 chrX 12388377 12388561 -150211369 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1394 144 137 50 chrX 12388563 12388840 -150211090 - AluJb SINE Alu -11 301 1 2457 72 0 0 chrX 12389066 12389349 -150210581 + AluSq SINE Alu 2 287 -26 180 97 0 0 chrX 12389349 12389380 -150210550 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1281 239 39 82 chrX 12389578 12390092 -150209838 - MLT1J LTR MaLR -3 508 17 202 342 25 0 chrX 12390535 12390614 -150209316 + MIR SINE MIR 2 82 -180 825 178 2 5 chrX 12390614 12390767 -150209163 + MLT1E3 LTR MaLR 102 257 -397 5733 78 128 96 chrX 12390777 12392157 -150207773 + MER57B-int LTR ERV1 6012 7487 -50 2407 57 0 3 chrX 12392157 12392479 -150207451 + AluSg SINE Alu 1 321 0 5733 78 128 96 chrX 12392479 12392532 -150207398 + MER57B-int LTR ERV1 7487 7537 0 2203 121 10 0 chrX 12392532 12392839 -150207091 + MER57B LTR ERV1 1 310 -124 1761 216 12 3 chrX 12392874 12393202 -150206728 + MLT1E3 LTR MaLR 294 624 0 985 188 106 29 chrX 12393233 12393440 -150206490 + MER58A DNA MER1_type 2 224 0 1152 233 38 27 chrX 12393485 12393777 -150206153 - LTR16C LTR ERVL -16 475 181 1512 232 61 53 chrX 12395158 12395650 -150204280 - MLT1J LTR MaLR 0 511 16 317 268 321 5 chrX 12396723 12396932 -150202998 - MLT1L LTR MaLR -221 394 120 1735 159 0 47 chrX 12397942 12398243 -150201687 - AluJo SINE Alu -24 288 2 272 308 13 0 chrX 12398512 12398590 -150201340 + MER91A DNA MER1_type 105 183 -13 925 152 136 0 chrX 12398814 12398998 -150200932 + MER3 DNA MER1_type 1 209 0 284 152 0 0 chrX 12398998 12399044 -150200886 - MER3 DNA MER1_type -162 47 2 934 261 116 4 chrX 12399045 12399313 -150200617 - LTR16C LTR ERVL -14 477 180 276 177 0 32 chrX 12399559 12399580 -150200350 - L1MC4a LINE L1 -1896 5912 5892 1904 143 17 3 chrX 12399580 12399873 -150200057 - AluJb SINE Alu -15 297 1 276 177 0 32 chrX 12399873 12399913 -150200017 - L1MC4a LINE L1 -1916 5892 5853 261 307 48 5 chrX 12400275 12400403 -150199527 + MIR SINE MIR 36 165 -63 387 202 53 17 chrX 12400810 12400923 -150199007 - MLT1I LTR MaLR -25 421 264 265 248 24 72 chrX 12400989 12401114 -150198816 - HAL1 LINE L1 -13 2494 2376 198 312 195 37 chrX 12401114 12401326 -150198604 - L2 LINE L2 -170 3143 2898 549 255 155 0 chrX 12401326 12401487 -150198443 - MER5A DNA MER1_type 0 189 4 955 212 321 3 chrX 12401489 12401866 -150198064 - L2 LINE L2 -406 2908 2412 184 293 93 0 chrX 12401893 12401968 -150197962 + L2 LINE L2 2555 2636 -678 1387 173 113 46 chrX 12402283 12402566 -150197364 - AluJo SINE Alu 0 302 1 915 213 40 0 chrX 12402650 12402824 -150197106 + MER5A DNA MER1_type 3 183 -6 473 154 192 83 chrX 12402897 12403053 -150196877 - MER5B DNA MER1_type -1 177 5 181 264 150 29 chrX 12403064 12403204 -150196726 + L2 LINE L2 2878 3034 -238 1136 103 5 62 chrX 12403693 12403892 -150196038 - MLT2A2 LTR ERVL 0 453 293 408 224 174 50 chrX 12404047 12404248 -150195682 + MIR SINE MIR 3 228 -34 2522 171 66 2 chrX 12404297 12404753 -150195177 - MLT1D LTR MaLR -2 503 19 199 303 105 0 chrX 12404955 12405031 -150194899 + L3 LINE CR1 1196 1279 -298 937 150 87 2 chrX 12405158 12405451 -150194479 - THE1B LTR MaLR 0 364 1 1511 179 111 130 chrX 12405556 12405775 -150194155 + MLT1H LTR MaLR 1 223 -326 2327 92 0 16 chrX 12405775 12406081 -150193849 - AluSc SINE Alu -8 301 1 1511 179 111 130 chrX 12406081 12406421 -150193509 + MLT1H LTR MaLR 223 549 0 2318 94 0 13 chrX 12406454 12406762 -150193168 + AluSx SINE Alu 1 304 -8 1650 196 3 26 chrX 12406912 12407111 -150192819 - AluJb SINE Alu -7 305 114 2018 121 59 51 chrX 12407111 12407483 -150192447 + THE1C LTR MaLR 1 375 0 1650 196 3 26 chrX 12407483 12407595 -150192335 - AluJb SINE Alu -198 114 1 2775 178 72 55 chrX 12407924 12408113 -150191817 - L1MD3 LINE L1 0 7995 7811 2321 102 3 0 chrX 12408113 12408417 -150191513 - AluSq SINE Alu -8 305 1 2775 178 72 55 chrX 12408417 12408795 -150191135 - L1MD3 LINE L1 -184 7811 7441 273 227 18 0 chrX 12408795 12408861 -150191069 - MLT1F1 LTR MaLR -445 122 67 1783 159 21 3 chrX 12408869 12409152 -150190778 + AluJo SINE Alu 6 293 -19 2415 69 0 13 chrX 12409156 12409460 -150190470 + AluY SINE Alu 1 300 -11 2775 178 72 55 chrX 12409460 12409749 -150190181 - L1MD3 LINE L1 -562 7433 6851 284 270 112 20 chrX 12409771 12409923 -150190007 + L2 LINE L2 1851 2016 -1298 967 287 39 63 chrX 12409937 12410369 -150189561 - L1MC5 LINE L1 -50 7911 7470 2015 120 28 0 chrX 12410369 12410652 -150189278 - AluSc SINE Alu -18 291 1 967 287 39 63 chrX 12410652 12410682 -150189248 - L1MC5 LINE L1 -491 7470 7441 1893 88 71 14 chrX 12410682 12410965 -150188965 + AluSq SINE Alu 1 299 -14 967 287 39 63 chrX 12410965 12411117 -150188813 - L1MC5 LINE L1 -520 7441 7311 560 61 41 10 chrX 12411123 12411221 -150188709 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 2088 110 6 49 chrX 12411316 12411643 -150188287 - AluSq SINE Alu 0 313 1 366 324 114 9 chrX 12411646 12411856 -150188074 + L2 LINE L2 2238 2469 -845 410 278 68 30 chrX 12412131 12412264 -150187666 + MIR SINE MIR 13 150 -112 609 252 85 88 chrX 12412264 12412593 -150187337 + MER46C DNA MER2_type 11 338 0 277 248 0 48 chrX 12412593 12412698 -150187232 + MIR SINE MIR 153 252 -10 891 261 102 74 chrX 12412886 12413406 -150186524 - L1ME2 LINE L1 -96 6025 5484 1933 138 34 17 chrX 12413406 12413704 -150186226 - AluSx SINE Alu -9 303 1 891 261 102 74 chrX 12413704 12413809 -150186121 - L1ME2 LINE L1 -637 5484 5384 22 0 0 0 chrX 12413861 12413883 -150186047 + AT_rich Low_complexity Low_complexity 1 22 0 4514 180 44 2 chrX 12413947 12414758 -150185172 + MER21B LTR ERV1 19 863 0 2212 91 39 0 chrX 12414885 12415170 -150184760 - AluSx SINE Alu -16 296 1 477 214 140 39 chrX 12415576 12415754 -150184176 - MIR SINE MIR -9 253 58 2387 52 49 0 chrX 12416381 12416668 -150183262 - AluY SINE Alu -10 301 1 1164 184 0 29 chrX 12416780 12416824 -150183106 + MER58A DNA MER1_type 6 50 -2370 2113 105 7 3 chrX 12416824 12417118 -150182812 - AluSc SINE Alu -14 295 1 1164 184 0 29 chrX 12417118 12417280 -150182650 + MER58A DNA MER1_type 50 206 -18 756 174 80 0 chrX 12418270 12418408 -150181522 + FRAM SINE Alu 18 166 -10 243 0 0 0 chrX 12420358 12420385 -150179545 + (T)n Simple_repeat Simple_repeat 1 27 0 1842 133 38 24 chrX 12420973 12421266 -150178664 - AluJb SINE Alu -15 297 1 337 196 39 69 chrX 12421426 12421528 -150178402 + L2 LINE L2 3171 3269 -3 1478 188 156 34 chrX 12422281 12422697 -150177233 + MLT1C LTR MaLR 1 467 0 2182 119 3 0 chrX 12425405 12425708 -150174222 + AluSx SINE Alu 1 304 -8 240 35 0 0 chrX 12425708 12425737 -150174193 + (TA)n Simple_repeat Simple_repeat 1 29 0 391 241 11 103 chrX 12425838 12426012 -150173918 - MIR SINE MIR -2 260 103 1814 191 103 26 chrX 12426330 12426759 -150173171 - MLT1C LTR MaLR 0 467 6 1101 110 79 0 chrX 12427595 12427759 -150172171 - FRAM SINE Alu 0 176 1 356 282 31 30 chrX 12428449 12428584 -150171346 + MIR SINE MIR 18 151 -63 2440 25 14 0 chrX 12429968 12430243 -150169687 + L1PA4 LINE L1 5874 6152 -3 25 0 0 0 chrX 12430275 12430300 -150169630 + AT_rich Low_complexity Low_complexity 1 25 0 341 57 0 19 chrX 12430656 12430709 -150169221 + (TA)n Simple_repeat Simple_repeat 1 52 0 357 167 11 22 chrX 12430749 12430839 -150169091 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 264 219 98 12 chrX 12430842 12430924 -150169006 - L1MC4 LINE L1 -1339 6703 6615 241 288 88 0 chrX 12430854 12430934 -150168996 + L1MC4 LINE L1 6614 6700 -1342 * 2427 68 3 0 chrX 12432224 12432518 -150167412 - AluSg SINE Alu -15 295 1 2388 106 0 0 chrX 12433058 12433369 -150166561 + AluSx SINE Alu 1 311 -1 647 172 115 73 chrX 12434093 12434285 -150165645 - MER58C DNA MER1_type -15 200 1 663 249 59 6 chrX 12438242 12438411 -150161519 - MER5B DNA MER1_type 0 178 1 259 228 33 22 chrX 12439041 12439133 -150160797 + CT-rich Low_complexity Low_complexity 5 97 0 343 221 145 15 chrX 12439470 12439601 -150160329 + L1ME LINE L1 5636 5783 -338 304 222 0 122 chrX 12439671 12439721 -150160209 - L2 LINE L2 -9 3263 3227 1087 166 155 7 chrX 12439721 12439999 -150159931 + MER33 DNA MER1_type 3 321 -3 304 222 0 122 chrX 12439999 12440038 -150159892 - L2 LINE L2 -45 3227 3185 910 210 186 32 chrX 12440520 12440768 -150159162 - MLT1J LTR MaLR -1 510 302 1366 125 31 58 chrX 12440768 12440992 -150158938 - MER20 DNA MER1_type -1 218 1 910 210 186 32 chrX 12440992 12441152 -150158778 - MLT1J LTR MaLR -209 302 39 1060 154 58 43 chrX 12441566 12441774 -150158156 - MER20 DNA MER1_type -7 212 2 238 309 180 36 chrX 12442414 12442997 -150156933 + L2 LINE L2 1335 2001 -1313 2483 217 14 4 chrX 12443162 12443678 -150156252 + L1MA2 LINE L1 2429 2949 -3197 1913 145 33 44 chrX 12443670 12444036 -150155894 + L1MA2 LINE L1 3601 3962 -2184 * 7509 122 25 9 chrX 12444024 12446059 -150153871 + L1MA2 LINE L1 4233 6304 0 282 269 0 0 chrX 12446215 12446282 -150153648 - LTR16A LTR ERVL -13 437 371 4588 131 12 3 chrX 12446283 12446311 -150153619 + L1PA16 LINE L1 5487 5513 -653 2220 63 0 31 chrX 12446311 12446598 -150153332 + AluSx SINE Alu 33 310 -2 4588 131 12 3 chrX 12446598 12447241 -150152689 + L1PA16 LINE L1 5513 6164 -2 691 236 33 65 chrX 12447277 12447323 -150152607 - LTR16A LTR ERVL -80 370 324 1064 160 12 115 chrX 12447323 12447567 -150152363 - MER20 DNA MER1_type 0 219 1 691 236 33 65 chrX 12447567 12447795 -150152135 - LTR16A LTR ERVL -126 324 105 1902 168 0 0 chrX 12450908 12451194 -150148736 - AluJo SINE Alu -23 289 4 442 218 0 0 chrX 12451203 12451281 -150148649 - AluJ/FRAM SINE Alu -18 294 217 25 0 0 0 chrX 12451337 12451362 -150148568 + AT_rich Low_complexity Low_complexity 1 25 0 1515 174 184 56 chrX 12451812 12451860 -150148070 - MER39 LTR ERV1 0 707 667 707 266 120 31 chrX 12451860 12452375 -150147555 - MER34B LTR ERV1 0 565 5 1515 174 184 56 chrX 12452375 12452834 -150147096 - MER39 LTR ERV1 -40 667 7 850 227 11 6 chrX 12453664 12453840 -150146090 + MER5B DNA MER1_type 1 177 -1 194 203 0 17 chrX 12453999 12454058 -150145872 + T-rich Low_complexity Low_complexity 2 59 0 222 310 150 9 chrX 12454070 12454183 -150145747 + MIR SINE MIR 2 130 -132 1141 170 38 5 chrX 12454198 12454410 -150145520 + MER20 DNA MER1_type 1 219 0 584 274 68 5 chrX 12454416 12454606 -150145324 + MIR SINE MIR 21 222 -40 1805 88 42 11 chrX 12455014 12455277 -150144653 - L1PA10 LINE L1 -5 6163 5893 351 284 39 26 chrX 12455321 12455476 -150144454 - L2 LINE L2 -1018 2296 2140 472 145 0 0 chrX 12455830 12455913 -150144017 - L1MB8 LINE L1 0 6178 6096 6295 131 15 6 chrX 12456067 12457213 -150142717 - L1MA6 LINE L1 0 6300 5150 4496 156 16 7 chrX 12457215 12458042 -150141888 + L1MA6 LINE L1 4309 5142 -1004 241 130 56 74 chrX 12458430 12458484 -150141446 + FLAM SINE Alu 75 127 -6 1009 83 83 0 chrX 12458565 12458722 -150141208 - L1PA15 LINE L1 -1 6164 5995 197 182 114 0 chrX 12459156 12459200 -150140730 - L2 LINE L2 0 3313 3265 357 294 55 31 chrX 12459523 12459686 -150140244 - MER5B DNA MER1_type -10 168 2 557 263 29 11 chrX 12459710 12459885 -150140045 - MER5B DNA MER1_type 0 178 1 925 196 14 29 chrX 12460554 12460763 -150139167 + MER3 DNA MER1_type 4 209 0 396 0 0 0 chrX 12461231 12461275 -150138655 + (TG)n Simple_repeat Simple_repeat 2 45 0 382 202 164 0 chrX 12461512 12461616 -150138314 + MIR SINE MIR 128 248 -14 2823 103 21 28 chrX 12461649 12462084 -150137846 - Tigger2a DNA MER2_type -2 432 1 2893 167 21 6 chrX 12464212 12464745 -150135185 - L1MA6 LINE L1 0 6300 5760 417 293 30 24 chrX 12464788 12464952 -150134978 + L1ME2 LINE L1 195 359 -5846 322 310 35 17 chrX 12464960 12465076 -150134854 + L1ME2 LINE L1 261 378 -6018 328 271 0 102 chrX 12465130 12465307 -150134623 + L1ME2 LINE L1 508 666 -5539 1358 271 70 41 chrX 12465431 12466306 -150133624 + L1ME2 LINE L1 660 1559 -4837 354 74 0 0 chrX 12466310 12466364 -150133566 + (TTTAG)n Simple_repeat Simple_repeat 2 55 0 2203 95 0 3 chrX 12466364 12466649 -150133281 - AluSx SINE Alu -28 284 1 1059 296 58 18 chrX 12466655 12467202 -150132728 + L1ME2 LINE L1 1648 2216 -4180 251 241 92 0 chrX 12467266 12467353 -150132577 + L1 LINE L1 4723 4817 -1329 667 235 131 0 chrX 12467420 12467603 -150132327 + L1M4 LINE L1 4017 4223 -1923 541 151 11 11 chrX 12467604 12467697 -150132233 + L1M4 LINE L1 4868 4960 -1186 639 234 7 0 chrX 12467699 12467853 -150132077 + L1ME2 LINE L1 4636 4790 -1425 667 342 92 22 chrX 12467866 12468270 -150131660 - LTR16A LTR ERVL 0 450 19 1029 227 140 17 chrX 12468515 12468861 -150131069 + L1ME2 LINE L1 5825 6188 -45 2182 111 26 40 chrX 12469867 12470247 -150129683 + THE1C LTR MaLR 1 375 0 225 94 0 0 chrX 12470439 12470471 -150129459 + (TA)n Simple_repeat Simple_repeat 1 32 0 1110 156 64 0 chrX 12470471 12470689 -150129241 - L1MA7 LINE L1 -76 6215 5984 312 230 35 11 chrX 12470689 12470776 -150129154 + MER94 DNA DNA 24 112 -22 414 214 68 29 chrX 12472232 12472335 -150127595 - LTR16C LTR ERVL 0 491 385 241 234 160 21 chrX 12472586 12472680 -150127250 - MER5A DNA MER1_type -82 107 1 306 239 134 21 chrX 12474233 12474375 -150125555 - LTR16A1 LTR ERVL -153 304 147 486 239 44 29 chrX 12474520 12474761 -150125169 + MER45C DNA AcHobo 2 256 -697 460 247 18 125 chrX 12475059 12475318 -150124612 + MER45C DNA AcHobo 722 953 0 267 79 0 0 chrX 12475330 12475368 -150124562 + (TA)n Simple_repeat Simple_repeat 2 39 0 2187 98 17 0 chrX 12475368 12475663 -150124267 - AluSx SINE Alu -12 300 1 202 254 190 95 chrX 12475766 12475900 -150124030 - MIR SINE MIR 0 262 142 2196 118 18 3 chrX 12475900 12476239 -150123691 + L1PB4 LINE L1 5809 6152 -4 202 254 190 95 chrX 12476239 12476336 -150123594 - MIR SINE MIR -120 142 9 1850 165 54 0 chrX 12476336 12476705 -150123225 - Charlie5 DNA MER1_type 0 2624 2236 639 204 0 15 chrX 12476701 12476833 -150123097 - Charlie5 DNA MER1_type -2482 130 1 * 284 235 0 0 chrX 12477022 12477073 -150122857 - L2 LINE L2 -22 3291 3241 588 310 61 32 chrX 12477147 12477457 -150122473 - MLT1C LTR MaLR -1 466 148 261 235 59 0 chrX 12477426 12477477 -150122453 - 5S rRNA rRNA -60 61 8 * 895 200 40 0 chrX 12477489 12477664 -150122266 - MLT1C LTR MaLR -285 182 1 420 309 71 65 chrX 12478574 12478956 -150120974 + L1MC/D LINE L1 4951 5334 -812 2337 90 0 7 chrX 12478988 12479287 -150120643 - AluSg SINE Alu -11 299 3 635 341 39 14 chrX 12479430 12479788 -150120142 + L1MC/D LINE L1 5451 5817 -1991 465 341 20 16 chrX 12479979 12480228 -150119702 + MIR SINE MIR 13 262 0 1087 204 0 0 chrX 12480436 12480632 -150119298 - L1MB5 LINE L1 -7 6167 5972 2497 150 61 2 chrX 12480634 12481107 -150118823 - L1MB5 LINE L1 -418 5756 5256 443 205 0 24 chrX 12481209 12481292 -150118638 + MER58 DNA MER1_type 129 2414 -6 1126 230 9 0 chrX 12482266 12482479 -150117451 - MER58A DNA MER1_type -6 218 4 234 0 0 0 chrX 12482833 12482859 -150117071 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 229 236 35 103 chrX 12483233 12483407 -150116523 + L1 LINE L1 4887 5048 -1098 1899 134 20 17 chrX 12483624 12483916 -150116014 + AluJb SINE Alu 6 298 -14 699 296 112 33 chrX 12483964 12484416 -150115514 + L1ME4a LINE L1 5272 5780 -341 1124 204 107 47 chrX 12484416 12484612 -150115318 + MER58B DNA MER1_type 5 229 -2191 2407 76 0 3 chrX 12484612 12484913 -150115017 - AluY SINE Alu -9 302 3 1124 204 107 47 chrX 12484913 12485034 -150114896 + MER58B DNA MER1_type 229 341 0 699 296 112 33 chrX 12485034 12485174 -150114756 + L1ME4a LINE L1 5780 5907 -214 317 218 26 0 chrX 12485253 12485331 -150114599 + MER103 DNA DNA 76 155 -11 540 0 0 0 chrX 12485775 12485835 -150114095 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1116 205 7 29 chrX 12485993 12486266 -150113664 - L1MD3 LINE L1 0 7995 7729 874 201 6 6 chrX 12486601 12486760 -150113170 + MER45A DNA AcHobo 20 178 0 22 35 0 0 chrX 12487125 12487154 -150112776 + AT_rich Low_complexity Low_complexity 1 29 0 291 243 14 0 chrX 12487671 12487741 -150112189 + MLT1C-int LTR MaLR 1299 1369 -2 1933 200 51 16 chrX 12487743 12488194 -150111736 + MLT1C LTR MaLR 1 467 0 360 251 5 112 chrX 12488441 12488656 -150111274 - L1ME4a LINE L1 -206 5915 5724 242 235 29 0 chrX 12489272 12489340 -150110590 + L1MC/D LINE L1 4471 4540 -1606 316 289 78 43 chrX 12489492 12489890 -150110040 + L1MC/D LINE L1 4678 5089 -1057 502 324 92 13 chrX 12490122 12490502 -150109428 + L1MC/D LINE L1 5355 5764 -2044 33 56 0 0 chrX 12490846 12490900 -150109030 + AT_rich Low_complexity Low_complexity 1 54 0 444 310 63 40 chrX 12490995 12491295 -150108635 - L1ME4a LINE L1 -236 5885 5579 3234 200 48 51 chrX 12492856 12493901 -150106029 - L1ME2 LINE L1 -1 6163 5118 222 37 0 0 chrX 12493912 12493939 -150105991 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7527 11 0 0 chrX 12493966 12494821 -150105109 - L1PA2 LINE L1 0 6155 5301 3758 30 2 0 chrX 12494821 12495282 -150104648 + L1P LINE L1 4875 5336 -810 549 221 95 32 chrX 12495334 12495439 -150104491 - L1ME2 LINE L1 -1099 5047 4950 1930 202 17 6 chrX 12495439 12495800 -150104130 - MLT1A1 LTR MaLR 0 365 1 549 221 95 32 chrX 12495800 12495884 -150104046 - L1ME2 LINE L1 -1196 4950 4846 1387 227 12 15 chrX 12595885 12596294 -150003636 + L1 LINE L1 2158 2565 -3581 4108 39 0 0 chrX 12596296 12596787 -150003143 + L1PA4 LINE L1 5662 6152 -3 1962 59 0 8 chrX 12596797 12597052 -150002878 + L1PA5 LINE L1 5896 6148 -6 1478 96 74 0 chrX 12597186 12597415 -150002515 - L1P LINE L1 -5151 995 750 30829 51 4 1 chrX 12597428 12602265 -149997665 + L1PA5 LINE L1 1300 6153 -1 3131 136 9 154 chrX 12602267 12602526 -149997404 + L1PA15-16 LINE L1 1942 2237 -4612 3991 30 0 0 chrX 12602526 12602996 -149996934 + L1PA3 LINE L1 5685 6154 -1 3131 136 9 154 chrX 12602996 12603324 -149996606 + L1PA15-16 LINE L1 2237 2379 -4470 1870 87 23 0 chrX 12603324 12603589 -149996341 - L1PA10 LINE L1 0 6168 5898 3131 136 9 154 chrX 12603589 12603818 -149996112 + L1PA15-16 LINE L1 2379 2640 -4209 4545 76 2 13 chrX 12603918 12604533 -149995397 + L1PA13 LINE L1 5552 6159 -4 1943 148 0 0 chrX 12605116 12605400 -149994530 - AluSx SINE Alu -28 284 1 2268 259 98 20 chrX 12605480 12606596 -149993334 - L1ME2 LINE L1 0 6164 4964 24933 148 14 29 chrX 12606815 12609962 -149989968 - L1PA10 LINE L1 -13 6470 3277 833 92 77 8 chrX 12609962 12610092 -149989838 - MER85 DNA T2_type 0 139 1 24933 148 14 29 chrX 12610092 12611324 -149988606 - L1PA10 LINE L1 -3206 3277 2144 295 100 20 0 chrX 12611324 12611374 -149988556 + MADE1 DNA Mariner 30 80 0 24933 148 14 29 chrX 12611374 12612703 -149987227 - L1PA10 LINE L1 -4339 2144 796 317 270 92 49 chrX 12613542 12613705 -149986225 + L1MEd LINE L1 12 181 -5938 1270 296 74 28 chrX 12613804 12614304 -149985626 + MLT1G1 LTR MaLR 73 595 0 739 201 0 34 chrX 12614349 12614626 -149985304 + MER2 DNA MER2_type 2 344 -1 940 287 54 85 chrX 12614632 12614725 -149985205 + L1MEd LINE L1 283 377 -5742 2010 146 44 14 chrX 12614725 12615089 -149984841 + THE1C LTR MaLR 1 375 0 940 287 54 85 chrX 12615089 12615924 -149984006 + L1MEd LINE L1 377 1182 -4937 210 307 69 0 chrX 12615959 12616060 -149983870 - MIR SINE MIR -56 206 99 277 253 13 27 chrX 12616107 12616182 -149983748 + L2 LINE L2 1857 1930 -1384 1813 175 21 0 chrX 12616269 12616601 -149983329 - L1PA16 LINE L1 -16 6150 5812 13172 157 35 8 chrX 12616701 12618868 -149981062 - L1M1 LINE L1 -5319 2246 20 279 276 175 4 chrX 12618888 12619134 -149980796 - L1MDb LINE L1 -2889 3240 2953 330 87 0 0 chrX 12619503 12619549 -149980381 + (TG)n Simple_repeat Simple_repeat 2 47 0 375 292 107 14 chrX 12620037 12620455 -149979475 - L1MDb LINE L1 -4910 1209 741 248 94 0 0 chrX 12620580 12620612 -149979318 - L1MDb LINE L1 -5492 627 596 235 330 43 9 chrX 12620958 12621073 -149978857 - L1MDb LINE L1 -5946 173 55 2825 175 32 17 chrX 12621215 12621804 -149978126 - L1MD3 LINE L1 -1 7994 7397 637 196 44 6 chrX 12621984 12622142 -149977788 - L1MD2 LINE L1 -2 6357 6194 436 155 0 0 chrX 12622318 12622389 -149977541 - MLT1D LTR MaLR 0 505 435 313 354 11 19 chrX 12622600 12622772 -149977158 - MIR SINE MIR -62 146 10 187 339 51 0 chrX 12623123 12623182 -149976748 - L2 LINE L2 -3 3310 3249 241 347 0 0 chrX 12623281 12623356 -149976574 + T-rich Low_complexity Low_complexity 72 146 0 22 0 0 0 chrX 12623985 12624007 -149975923 + AT_rich Low_complexity Low_complexity 1 22 0 204 167 24 0 chrX 12624424 12624466 -149975464 + (TA)n Simple_repeat Simple_repeat 2 44 0 210 378 0 14 chrX 12624878 12624952 -149974978 + MIR3 SINE MIR 6 78 -130 2378 77 3 3 chrX 12625066 12625363 -149974567 - AluSg SINE Alu -12 298 2 238 370 94 0 chrX 12625413 12625540 -149974390 + MIR3 SINE MIR 40 178 -30 243 0 0 0 chrX 12626393 12626420 -149973510 + (T)n Simple_repeat Simple_repeat 1 27 0 195 219 24 0 chrX 12626962 12627003 -149972927 - MIR SINE MIR -5 257 216 5029 148 9 1 chrX 12627315 12628170 -149971760 + L1P LINE L1 4529 5390 -756 4098 122 61 0 chrX 12628273 12628911 -149971019 - L1P LINE L1 -5460 686 10 1115 265 68 31 chrX 12628919 12629729 -149970201 - L1PBb LINE L1 -4913 1935 1028 420 365 62 60 chrX 12630268 12630783 -149969147 - L1PBb LINE L1 -6318 531 16 222 245 19 0 chrX 12630811 12630864 -149969066 - MER5A DNA MER1_type 0 189 136 323 245 19 38 chrX 12631608 12631714 -149968216 + GA-rich Low_complexity Low_complexity 2 105 0 593 245 80 7 chrX 12632370 12632521 -149967409 - MIR SINE MIR -21 241 80 204 314 0 0 chrX 12633050 12633101 -149966829 + L3 LINE CR1 1524 1574 -3 1006 207 37 5 chrX 12633281 12633498 -149966432 - MER58A DNA MER1_type 0 224 1 514 162 0 0 chrX 12635024 12635123 -149964807 - L1MA4 LINE L1 -11 6289 6191 218 318 146 9 chrX 12635282 12635392 -149964538 - MIR SINE MIR -6 256 132 585 185 65 98 chrX 12635431 12635615 -149964315 - MLT1E LTR MaLR -2 591 414 1564 148 4 0 chrX 12635622 12635893 -149964037 - L1MA3 LINE L1 0 6305 6034 4586 109 26 3 chrX 12635902 12636869 -149963061 - L1MA3 LINE L1 -369 5936 4949 1308 254 92 25 chrX 12636881 12637274 -149962656 - MLT1E LTR MaLR -174 419 1 666 255 127 110 chrX 12637952 12638407 -149961523 + L1MC4 LINE L1 5672 6118 -1690 725 84 9 0 chrX 12638407 12638514 -149961416 - L1MA6 LINE L1 0 6300 6193 666 255 127 110 chrX 12638514 12638749 -149961181 + L1MC4 LINE L1 6118 6348 -1460 2066 129 7 3 chrX 12638749 12639052 -149960878 + AluSx SINE Alu 1 304 -8 666 255 127 110 chrX 12639052 12639581 -149960349 + L1MC4 LINE L1 6348 6872 -936 510 260 59 18 chrX 12639634 12639878 -149960052 + L1MC4 LINE L1 7000 7219 -742 7197 126 16 2 chrX 12639898 12641419 -149958511 - L1MA2 LINE L1 0 6304 4765 634 244 32 42 chrX 12641536 12641819 -149958111 + L1MC5 LINE L1 7313 7592 -369 22 0 0 0 chrX 12643176 12643198 -149956732 + AT_rich Low_complexity Low_complexity 1 22 0 423 303 42 21 chrX 12643258 12643496 -149956434 - L1ME4a LINE L1 -268 5853 5611 455 222 56 19 chrX 12643747 12643855 -149956075 - MER94 DNA DNA 0 134 23 539 146 35 15 chrX 12644660 12645140 -149954790 + (TA)n Simple_repeat Simple_repeat 1 489 0 1087 122 0 0 chrX 12645537 12645684 -149954246 + AluJb SINE Alu 150 296 -16 1105 221 52 109 chrX 12646744 12647164 -149952766 + L1ME2 LINE L1 5760 6155 -7 235 368 58 37 chrX 12647422 12647612 -149952318 - L3 LINE CR1 -984 593 400 586 318 57 14 chrX 12647895 12648175 -149951755 + L1MEd LINE L1 67 358 -5761 356 269 46 9 chrX 12648505 12648613 -149951317 + L1MEd LINE L1 17 128 -5991 225 272 48 48 chrX 12648927 12649030 -149950900 + MLT2E LTR ERVL 40 142 -486 1080 259 64 73 chrX 12649481 12650230 -149949700 + L1MEd LINE L1 528 1302 -4965 2114 91 0 0 chrX 12650230 12650504 -149949426 + AluSg SINE Alu 33 306 -4 1080 259 64 73 chrX 12650504 12650590 -149949340 + L1MEd LINE L1 1302 1387 -4880 215 146 0 73 chrX 12650836 12650932 -149948998 + (TA)n Simple_repeat Simple_repeat 1 89 0 209 248 208 10 chrX 12652513 12652614 -149947316 + L2 LINE L2 3193 3313 0 486 304 158 25 chrX 12652614 12652854 -149947076 - L2 LINE L2 -342 2972 2701 1955 195 23 99 chrX 12652865 12653420 -149946510 - MLT2B1 LTR ERVL -7 513 1 23 68 0 0 chrX 12653996 12654040 -149945890 + AT_rich Low_complexity Low_complexity 1 44 0 632 295 31 22 chrX 12654521 12654826 -149945104 + MLT1H LTR MaLR 1 353 -196 2186 188 56 25 chrX 12654963 12655448 -149944482 + MLT1D LTR MaLR 1 500 -5 212 241 0 69 chrX 12656482 12656540 -149943390 - L2 LINE L2 -8 3305 3252 14023 138 25 4 chrX 12656733 12659043 -149940887 + L1M4c LINE L1 13 2371 -4013 2309 127 5 5 chrX 12659045 12659415 -149940515 + L1MB3 LINE L1 5806 6175 -8 1248 185 9 0 chrX 12659796 12660007 -149939923 + AluJo SINE Alu 86 298 -14 655 313 34 38 chrX 12660090 12660389 -149939541 - LTR16A1 LTR ERVL 0 457 177 385 303 138 7 chrX 12661388 12661540 -149938390 + MER5B DNA MER1_type 1 172 -6 282 271 188 0 chrX 12662993 12663089 -149936841 + MIR SINE MIR 79 192 -70 296 259 191 30 chrX 12664137 12664268 -149935662 + L2 LINE L2 3121 3272 0 32 26 0 0 chrX 12664700 12664739 -149935191 + AT_rich Low_complexity Low_complexity 1 39 0 315 203 43 0 chrX 12665540 12665609 -149934321 - MLT1K LTR MaLR 0 588 517 748 159 7 0 chrX 12665621 12665772 -149934158 + L1MA7 LINE L1 6127 6278 -13 21 57 0 0 chrX 12666124 12666159 -149933771 + GC_rich Low_complexity Low_complexity 1 35 0 648 281 20 10 chrX 12667604 12667803 -149932127 - LTR16A1 LTR ERVL -69 388 188 326 338 0 0 chrX 12669199 12669353 -149930577 + GA-rich Low_complexity Low_complexity 1 154 0 411 225 101 11 chrX 12669813 12669902 -149930028 - L2 LINE L2 -8 3264 3168 1000 290 54 23 chrX 12670544 12670934 -149928996 + MLT1I LTR MaLR 3 404 -5 351 380 0 8 chrX 12670934 12671063 -149928867 + MER5B DNA MER1_type 6 133 -45 357 174 265 0 chrX 12671092 12671190 -149928740 + L2 LINE L2 3190 3313 0 2824 22 0 6 chrX 12671878 12672198 -149927732 - AluYb8 SINE Alu 0 318 1 293 131 16 0 chrX 12672585 12672646 -149927284 + (TA)n Simple_repeat Simple_repeat 1 62 0 2156 110 0 23 chrX 12672961 12673262 -149926668 - AluSg SINE Alu -16 294 1 568 204 0 0 chrX 12673669 12673767 -149926163 - Charlie4 DNA MER1_type -15 1946 1849 222 200 0 0 chrX 12674394 12674434 -149925496 + (CA)n Simple_repeat Simple_repeat 2 41 0 246 250 50 0 chrX 12674635 12674695 -149925235 + MIR SINE MIR 110 172 -90 607 210 167 0 chrX 12674906 12675068 -149924862 - MER5A DNA MER1_type 0 189 1 2300 185 8 40 chrX 12675211 12675729 -149924201 + MLT1D LTR MaLR 5 505 0 261 0 0 0 chrX 12677093 12677122 -149922808 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 191 0 0 chrX 12678582 12678629 -149921301 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 496 319 36 11 chrX 12678729 12678914 -149921016 - MIR SINE MIR -62 146 2 1089 160 21 32 chrX 12679436 12679624 -149920306 + MER5A DNA MER1_type 3 188 -1 214 375 45 0 chrX 12679717 12679805 -149920125 + L2 LINE L2 3222 3313 0 1047 167 19 33 chrX 12680229 12680439 -149919491 + MER3 DNA MER1_type 1 207 -2 379 378 0 0 chrX 12680579 12680690 -149919240 - MIR SINE MIR -68 140 30 23 0 0 0 chrX 12680935 12680958 -149918972 + AT_rich Low_complexity Low_complexity 1 23 0 283 234 36 51 chrX 12680972 12681109 -149918821 - L1ME LINE L1 -270 5894 5758 7176 51 0 2 chrX 12681174 12682415 -149917515 - L1PA7 LINE L1 -2 6152 4912 1887 134 3 62 chrX 12684692 12685013 -149914917 - AluSx SINE Alu -10 302 1 14924 87 0 12 chrX 12685184 12687302 -149912628 - L1P LINE L1 -1538 4608 2516 632 320 78 16 chrX 12687482 12687634 -149912296 - MIR SINE MIR -1 261 87 2430 219 66 11 chrX 12687634 12688196 -149911734 - MLT1E LTR MaLR 0 593 1 632 320 78 16 chrX 12688196 12688287 -149911643 - MIR SINE MIR -175 87 3 1186 274 90 47 chrX 12688378 12688888 -149911042 - MLT1H LTR MaLR -14 535 4 347 324 9 0 chrX 12689714 12689825 -149910105 + MIR3 SINE MIR 54 165 -43 1381 85 0 5 chrX 12689825 12690013 -149909917 - L1PB1 LINE L1 -386 5765 5579 2652 99 0 5 chrX 12690013 12690394 -149909536 + L1PB1 LINE L1 5771 6150 -1 1026 180 62 19 chrX 12690613 12690824 -149909106 + MER58A DNA MER1_type 4 223 -1 2366 73 10 7 chrX 12691723 12692025 -149907905 - AluY SINE Alu -8 303 1 274 397 0 0 chrX 12692294 12692410 -149907520 + L2 LINE L2 3138 3253 -19 21 0 0 0 chrX 12692652 12692673 -149907257 + AT_rich Low_complexity Low_complexity 1 21 0 2407 149 33 16 chrX 12692744 12693167 -149906763 + MSTB1 LTR MaLR 1 430 -2 294 29 0 0 chrX 12695524 12695559 -149904371 + (CA)n Simple_repeat Simple_repeat 1 35 0 1928 194 99 3 chrX 12696135 12696527 -149903403 + MER63B DNA MER1_type 1 430 -6 201 290 130 42 chrX 12697046 12697284 -149902646 + L2 LINE L2 2226 2484 -830 378 0 0 0 chrX 12698393 12698435 -149901495 + (CA)n Simple_repeat Simple_repeat 2 43 0 537 259 56 0 chrX 12699114 12699257 -149900673 + MIR SINE MIR 51 201 -61 7412 161 18 7 chrX 12699308 12701525 -149898405 + L1MA4A LINE L1 3881 6122 -181 574 129 0 0 chrX 12701528 12701621 -149898309 + L1MA4A LINE L1 6188 6280 -23 303 242 94 76 chrX 12701690 12701976 -149897954 - MLT1H LTR MaLR -97 452 92 4274 108 24 0 chrX 12702025 12702653 -149897277 - L1PA15 LINE L1 0 6165 5523 1664 124 0 11 chrX 12702729 12702994 -149896936 - L1PB3 LINE L1 -2 6152 5891 4197 144 6 10 chrX 12703042 12704444 -149895486 - L1PB3 LINE L1 -267 5887 4492 582 109 50 10 chrX 12704444 12704545 -149895385 - MLT1H LTR MaLR -443 106 2 456 239 18 0 chrX 12704546 12704655 -149895275 + L1ME3A LINE L1 5562 5672 -498 334 205 0 0 chrX 12704685 12704763 -149895167 - L1PB3 LINE L1 -123 6031 5954 1738 207 33 35 chrX 12704786 12705241 -149894689 + L1ME3A LINE L1 5709 6162 -8 1226 278 53 13 chrX 12705930 12706308 -149893622 - MLT1I LTR MaLR -16 393 1 231 379 65 8 chrX 12706474 12706598 -149893332 - MIR3 SINE MIR -21 187 57 333 102 0 0 chrX 12706837 12706896 -149893034 + (CA)n Simple_repeat Simple_repeat 2 60 0 575 322 47 32 chrX 12707236 12707978 -149891952 - L1M4 LINE L1 -1783 4363 3611 795 40 0 0 chrX 12708018 12708117 -149891813 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 447 289 19 66 chrX 12708278 12708489 -149891441 - MLT1J2 LTR MaLR 0 450 250 18612 31 1 0 chrX 12708524 12711544 -149888386 - L1PA3 LINE L1 0 6155 3136 24 0 0 0 chrX 12711620 12711644 -149888286 + AT_rich Low_complexity Low_complexity 1 24 0 328 240 92 5 chrX 12711665 12711861 -149888069 - L1M4 LINE L1 -2866 3280 3068 318 266 9 80 chrX 12712805 12712918 -149887012 - MIR3 SINE MIR -2 206 102 986 229 47 5 chrX 12713061 12713275 -149886655 + MER58A DNA MER1_type 2 224 0 329 284 64 9 chrX 12715049 12715158 -149884772 + MER5A DNA MER1_type 7 121 -68 2233 110 7 0 chrX 12715610 12715975 -149883955 - AluSp SINE Alu 0 367 1 205 318 91 18 chrX 12716153 12716263 -149883667 - L2 LINE L2 0 3272 3155 1285 213 8 0 chrX 12717127 12717385 -149882545 + MLT1F1 LTR MaLR 1 260 -307 474 176 0 137 chrX 12720105 12720236 -149879694 - MER81 DNA DNA 0 114 2 669 160 206 0 chrX 12720238 12720369 -149879561 + MER5B DNA MER1_type 16 173 -5 345 263 63 11 chrX 12721081 12721176 -149878754 - L2 LINE L2 0 3272 3173 302 253 0 0 chrX 12721374 12721461 -149878469 - L1MC4 LINE L1 -1339 6703 6617 23 54 0 0 chrX 12722108 12722145 -149877785 + AT_rich Low_complexity Low_complexity 1 37 0 1145 207 28 0 chrX 12722888 12723105 -149876825 - MER58A DNA MER1_type 0 224 2 650 251 54 18 chrX 12723715 12723994 -149875936 - L1MDa LINE L1 -4627 1913 1625 224 30 30 0 chrX 12723995 12724028 -149875902 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 10760 43 15 32 chrX 12724031 12725391 -149874539 - SVA Other Other -20 1366 29 1650 216 261 10 chrX 12725508 12726124 -149873806 - LTR50 LTR ERVL -24 771 1 27 49 0 0 chrX 12726157 12726198 -149873732 + AT_rich Low_complexity Low_complexity 1 41 0 867 145 34 191 chrX 12726299 12726561 -149873369 - MER58A DNA MER1_type 0 224 4 623 270 0 110 chrX 12726572 12726639 -149873291 - MER5B DNA MER1_type 0 178 105 1957 125 0 39 chrX 12726639 12726944 -149872986 + AluJb SINE Alu 3 295 -17 623 270 0 110 chrX 12726944 12727076 -149872854 - MER5B DNA MER1_type -73 105 1 249 315 43 0 chrX 12727342 12727434 -149872496 + L2 LINE L2 3218 3313 0 2348 41 38 54 chrX 12728363 12728679 -149871251 + AluY SINE Alu 1 311 0 400 291 133 13 chrX 12728705 12728856 -149871074 - MER5B DNA MER1_type -4 174 6 281 311 41 41 chrX 12729593 12729812 -149870118 + MLT1J1 LTR MaLR 1 219 -231 2340 84 7 0 chrX 12730293 12730590 -149869340 - AluSp SINE Alu -13 300 2 2985 249 82 58 chrX 12730687 12730801 -149869129 + L2 LINE L2 1973 2083 -1230 2541 90 3 3 chrX 12730801 12731157 -149868773 - L1PA8 LINE L1 -7 6165 5810 2985 249 82 58 chrX 12731157 12731913 -149868017 + L2 LINE L2 2083 2898 -415 1784 158 0 63 chrX 12731913 12732230 -149867700 - AluJb SINE Alu -13 299 3 2985 249 82 58 chrX 12732230 12732657 -149867273 + L2 LINE L2 2898 3313 0 659 285 311 10 chrX 12732933 12733156 -149866774 - LTR50 LTR ERVL 0 795 640 2982 154 22 7 chrX 12733156 12733709 -149866221 + L1MB7 LINE L1 5612 6172 -12 659 285 311 10 chrX 12733709 12734071 -149865859 - LTR50 LTR ERVL -155 640 34 261 0 0 0 chrX 12734516 12734545 -149865385 + (CA)n Simple_repeat Simple_repeat 2 30 0 1571 313 29 22 chrX 12735035 12735726 -149864204 - ERVL LTR ERVL -848 4916 4221 547 259 117 10 chrX 12735726 12735923 -149864007 - LTR50 LTR ERVL -572 223 6 286 306 90 0 chrX 12736070 12736181 -149863749 + MIR SINE MIR 82 202 -60 976 174 27 49 chrX 12736298 12736522 -149863408 + MER20 DNA MER1_type 1 219 0 323 220 0 0 chrX 12736914 12736973 -149862957 - MIR SINE MIR -20 242 184 292 288 199 0 chrX 12737621 12737767 -149862163 + MIR SINE MIR 84 258 -4 1412 282 83 1 chrX 12737798 12738306 -149861624 + L1MD3 LINE L1 6149 6343 -1 315 261 11 0 chrX 12738448 12738540 -149861390 + L1ME LINE L1 5565 5657 -464 2309 96 0 3 chrX 12738615 12738917 -149861013 + AluSx SINE Alu 1 301 -11 5938 139 25 2 chrX 12738940 12740567 -149859363 + L1MA5 LINE L1 4639 6300 0 245 248 50 10 chrX 12740698 12740799 -149859131 + L1ME LINE L1 5793 5897 -224 299 136 296 23 chrX 12743021 12743109 -149856821 + FRAM SINE Alu 55 166 0 1642 192 30 9 chrX 12743478 12743812 -149856118 + MER58B DNA MER1_type 1 341 0 189 0 0 0 chrX 12744362 12744383 -149855547 + (T)n Simple_repeat Simple_repeat 1 21 0 1418 228 42 32 chrX 12744611 12745011 -149854919 - LTR16A1 LTR ERVL 0 457 54 393 289 41 8 chrX 12746071 12746192 -149853738 - MIR SINE MIR -102 160 36 244 311 168 37 chrX 12747306 12747467 -149852463 - MIR SINE MIR -30 232 51 1349 238 32 34 chrX 12747723 12748130 -149851800 + L2 LINE L2 2908 3313 0 1313 210 20 0 chrX 12748943 12749188 -149850742 + MER58B DNA MER1_type 1 250 -91 1132 223 8 4 chrX 12749188 12749426 -149850504 - MER8 DNA MER2_type 0 239 1 338 165 48 107 chrX 12749426 12749525 -149850405 + MER58B DNA MER1_type 249 341 0 29 47 0 0 chrX 12749589 12749632 -149850298 + AT_rich Low_complexity Low_complexity 1 43 0 519 31 0 0 chrX 12750863 12750928 -149849002 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 684 302 124 11 chrX 12751292 12751640 -149848290 - L2 LINE L2 0 3313 2927 502 263 216 19 chrX 12751815 12752028 -149847902 - MIR SINE MIR -3 259 5 588 295 87 46 chrX 12753064 12753466 -149846464 - MLT1J2 LTR MaLR -10 440 13 1188 176 25 0 chrX 12753699 12753903 -149846027 - MER2 DNA MER2_type -136 209 1 608 332 108 27 chrX 12754083 12754739 -149845191 + L2 LINE L2 1498 2206 -1108 428 364 68 41 chrX 12755012 12755501 -149844429 + L2 LINE L2 2045 2546 -768 335 299 13 0 chrX 12755879 12755956 -149843974 + L2 LINE L2 3179 3256 -16 * 685 329 74 43 chrX 12755954 12756492 -149843438 + L2 LINE L2 2205 2759 -555 2492 115 6 3 chrX 12756690 12757039 -149842891 - THE1B LTR MaLR 0 364 15 9853 117 34 33 chrX 12757077 12758654 -149841276 - THE1B-int LTR MaLR -2 1578 1 2445 121 3 24 chrX 12758654 12759026 -149840904 - THE1B LTR MaLR 0 364 1 1555 265 58 27 chrX 12759026 12759513 -149840417 - MLT1H LTR MaLR -45 504 3 209 267 209 0 chrX 12759700 12759786 -149840144 + L2 LINE L2 3184 3287 -26 24 32 0 0 chrX 12759794 12759825 -149840105 + AT_rich Low_complexity Low_complexity 1 31 0 290 326 177 28 chrX 12761035 12761250 -149838680 + L3 LINE CR1 323 569 -1008 1049 209 73 0 chrX 12761251 12761457 -149838473 - MER58A DNA MER1_type -3 221 1 210 158 0 0 chrX 12762045 12762083 -149837847 + T-rich Low_complexity Low_complexity 1 38 0 1441 229 30 0 chrX 12762083 12762420 -149837510 - L1MD1 LINE L1 -79 6163 5817 22 25 0 25 chrX 12762429 12762444 -149837486 + AT_rich Low_complexity Low_complexity 1 15 -24 436 91 15 0 chrX 12762444 12762510 -149837420 + L1PA5 LINE L1 6081 6147 -7 22 25 0 25 chrX 12762510 12762534 -149837396 + AT_rich Low_complexity Low_complexity 15 39 0 937 192 22 6 chrX 12762576 12762758 -149837172 + MER5A DNA MER1_type 5 189 0 660 253 13 6 chrX 12762827 12762985 -149836945 - MER5B DNA MER1_type -19 159 1 306 0 0 0 chrX 12763253 12763287 -149836643 + (CA)n Simple_repeat Simple_repeat 2 35 0 450 259 71 87 chrX 12763587 12763980 -149835950 + L1 LINE L1 3084 3470 -2676 1658 66 0 0 chrX 12764115 12764327 -149835603 - L1PA6 LINE L1 -3 6151 5940 1294 177 96 104 chrX 12764624 12765019 -149834911 - MSTD LTR MaLR 0 396 5 309 303 30 0 chrX 12765204 12765335 -149834595 - HsTC2 DNA Tc2 -1042 856 722 2094 106 51 17 chrX 12765335 12765665 -149834265 + THE1B LTR MaLR 1 406 -22 624 130 56 2 chrX 12765665 12765769 -149834161 + L1MC3 LINE L1 7280 7506 -406 371 350 31 5 chrX 12765770 12765993 -149833937 - HsTC2 DNA Tc2 -1163 735 507 245 206 0 15 chrX 12766019 12766087 -149833843 - HsTC2 DNA Tc2 -1609 289 223 3322 135 148 135 chrX 12766087 12766474 -149833456 + L1MC3 LINE L1 6714 7095 -690 268 250 45 36 chrX 12766474 12766586 -149833344 + MLT1F1 LTR MaLR 35 147 -420 3322 135 148 135 chrX 12766586 12767136 -149832794 + L1MC3 LINE L1 7095 7775 -10 205 336 92 34 chrX 12767445 12767564 -149832366 + L2 LINE L2 3144 3269 -3 7318 148 36 17 chrX 12767818 12767923 -149832007 - L1MA4A LINE L1 -5 6298 6196 3608 32 0 9 chrX 12767923 12768363 -149831567 - L1PA5 LINE L1 0 6154 5719 7318 148 36 17 chrX 12768363 12768947 -149830983 - L1MA4A LINE L1 -107 6196 5625 2283 71 0 3 chrX 12768947 12769260 -149830670 - AluY SINE Alu 0 312 1 7318 148 36 17 chrX 12769260 12770917 -149829013 - L1MA4A LINE L1 -678 5625 3900 6777 136 8 3 chrX 12770917 12772963 -149826967 + L1MA2 LINE L1 4093 6147 -157 279 261 0 29 chrX 12773047 12773116 -149826814 - MER5A DNA MER1_type -111 78 12 504 276 97 31 chrX 12773185 12773413 -149826517 + MIR SINE MIR 8 250 -12 567 276 140 25 chrX 12774610 12774932 -149824998 + MLT1J1 LTR MaLR 69 427 -19 1798 175 28 0 chrX 12775245 12775565 -149824365 + MER58B DNA MER1_type 13 341 0 340 304 31 15 chrX 12775614 12775784 -149824146 + MLT1H LTR MaLR 31 175 -275 287 228 81 35 chrX 12775885 12776028 -149823902 + MLT1H LTR MaLR 379 549 0 547 221 21 41 chrX 12776899 12777069 -149822861 + MER5B DNA MER1_type 29 178 0 338 296 35 21 chrX 12777583 12777725 -149822205 - MLT1L LTR MaLR -458 157 14 466 238 166 0 chrX 12778492 12778643 -149821287 - MER5A DNA MER1_type -5 184 9 419 297 69 11 chrX 12778977 12779152 -149820778 + MER34 LTR ERV1 353 537 -5 402 219 7 88 chrX 12779488 12779625 -149820305 + MER89-int LTR ERV1 520 645 -6156 303 222 68 52 chrX 12779734 12779888 -149820042 + MER89-int LTR ERV1 743 1496 -4835 818 238 69 31 chrX 12779891 12780346 -149819584 + LTR56 LTR ERV1 1 574 -2 1513 0 0 0 chrX 12780347 12780515 -149819415 - LTR54 LTR ERV1 0 510 2553 2728 137 58 46 chrX 12780515 12780806 -149819124 + LTR45 LTR ERV1 1 302 -223 2053 127 3 3 chrX 12780806 12781106 -149818824 + AluSx SINE Alu 1 300 -12 2728 137 58 46 chrX 12781106 12781333 -149818597 + LTR45 LTR ERV1 302 525 0 1513 0 0 0 chrX 12781333 12781466 -149818464 - LTR54 LTR ERV1 2044 2554 177 294 116 0 0 chrX 12781449 12781492 -149818438 - LTR54B LTR ERV1 -355 143 101 * 1495 205 19 91 chrX 12781497 12782093 -149817837 + LTR9 LTR ERV1 2 502 -110 2498 81 0 0 chrX 12782093 12782402 -149817528 - AluSc SINE Alu 0 309 1 1495 205 19 91 chrX 12782402 12782478 -149817452 + LTR9 LTR ERV1 502 582 -30 625 162 0 43 chrX 12782479 12782596 -149817334 - LTR54B LTR ERV1 -386 112 1 273 173 39 0 chrX 12782684 12782736 -149817194 + MER67B LTR ERV1 145 198 -463 433 279 44 129 chrX 12784074 12784346 -149815584 + MLT1I LTR MaLR 98 310 -99 1172 217 33 0 chrX 12785239 12785451 -149814479 - MER58A DNA MER1_type -5 219 1 1078 285 74 16 chrX 12785708 12786073 -149813857 - MLT1J2 LTR MaLR -15 435 50 723 236 109 35 chrX 12786458 12786687 -149813243 + MIR SINE MIR 7 252 -10 198 103 0 0 chrX 12787076 12787105 -149812825 + (TG)n Simple_repeat Simple_repeat 1 29 0 427 278 77 29 chrX 12787627 12787900 -149812030 + L1ME4a LINE L1 5773 6058 -63 313 263 0 40 chrX 12788097 12788196 -149811734 + MLT1I LTR MaLR 286 380 -29 359 289 132 0 chrX 12788287 12788408 -149811522 - MIR3 SINE MIR -17 191 55 651 310 73 27 chrX 12788683 12789503 -149810427 + L1ME3 LINE L1 4518 5403 -743 1482 213 36 39 chrX 12789557 12789919 -149810011 + MLT1A2 LTR MaLR 1 361 -13 243 210 16 0 chrX 12790041 12790103 -149809827 - L1MA9 LINE L1 -36 6276 6214 346 292 41 85 chrX 12790111 12790501 -149809429 + L1ME3 LINE L1 5565 5937 -225 23 54 0 0 chrX 12790755 12790792 -149809138 + AT_rich Low_complexity Low_complexity 1 37 0 1519 140 0 4 chrX 12791370 12791599 -149808331 + AluSg/x SINE Alu 76 303 -7 17209 108 19 15 chrX 12791614 12797160 -149802770 + L1PA7 LINE L1 607 7592 0 3198 114 36 15 chrX 12797160 12797683 -149802247 + L1MA3 LINE L1 5762 6305 0 527 219 49 44 chrX 12797735 12797918 -149802012 + L1M4 LINE L1 4394 4577 -1569 29 28 0 0 chrX 12797988 12798024 -149801906 + AT_rich Low_complexity Low_complexity 1 36 0 326 238 136 77 chrX 12798579 12798757 -149801173 + HAL1 LINE L1 866 1063 -1444 2605 43 0 0 chrX 12798757 12799059 -149800871 + AluY SINE Alu 1 302 -9 326 238 136 77 chrX 12799059 12799115 -149800815 + HAL1 LINE L1 1063 1114 -1393 438 358 99 9 chrX 12799335 12799679 -149800251 + HAL1 LINE L1 1391 1765 -742 672 306 114 34 chrX 12800112 12800619 -149799311 + L1ME LINE L1 511 1058 -5472 660 242 84 30 chrX 12800624 12800922 -149799008 + L1ME LINE L1 1589 1902 -4638 258 32 0 0 chrX 12800928 12800959 -149798971 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 822 213 220 47 chrX 12801114 12801410 -149798520 + L1MC4a LINE L1 6433 6779 -1029 2073 143 15 0 chrX 12801799 12802135 -149797795 + MER2 DNA MER2_type 1 341 -3 345 223 13 28 chrX 12803111 12803203 -149796727 + MIR SINE MIR 65 142 -66 1299 205 31 96 chrX 12803221 12803607 -149796323 + MLT1A1 LTR MaLR 5 365 0 329 0 24 0 chrX 12803768 12803809 -149796121 + (CA)n Simple_repeat Simple_repeat 2 43 0 295 219 0 0 chrX 12804033 12804106 -149795824 - MER112 DNA MER1_type -92 168 96 421 233 35 52 chrX 12804571 12804687 -149795243 + MER81 DNA DNA 1 114 0 233 260 27 0 chrX 12805510 12805583 -149794347 - L1ME2 LINE L1 -54 6110 6036 1911 207 57 2 chrX 12805646 12806067 -149793863 - L1MD1 LINE L1 -5 6237 5794 358 327 9 9 chrX 12806067 12806174 -149793756 + MIR3 SINE MIR 74 180 -28 27 49 0 0 chrX 12806215 12806256 -149793674 + AT_rich Low_complexity Low_complexity 1 41 0 5727 121 25 3 chrX 12808010 12809123 -149790807 - L1PA16 LINE L1 0 6166 5041 667 251 78 18 chrX 12809128 12809347 -149790583 + L2 LINE L2 2304 2535 -779 26 64 0 0 chrX 12809392 12809439 -149790491 + AT_rich Low_complexity Low_complexity 1 47 0 342 235 88 37 chrX 12809916 12810052 -149789878 + MIR3 SINE MIR 50 192 -16 738 144 8 0 chrX 12810140 12810258 -149789672 - L1MD3 LINE L1 -30 7965 7847 398 223 61 47 chrX 12810787 12810935 -149788995 + MIR SINE MIR 103 252 -10 193 313 182 0 chrX 12810940 12811039 -149788891 + MIR3 SINE MIR 87 203 -5 244 311 106 26 chrX 12811254 12811405 -149788525 - MIR SINE MIR -43 219 57 509 264 0 16 chrX 12811629 12811750 -149788180 + MLT1J2 LTR MaLR 37 155 -295 315 271 33 57 chrX 12812044 12812166 -149787764 - MIR SINE MIR -72 190 72 3536 155 11 24 chrX 12812412 12813044 -149786886 + L1MB7 LINE L1 5542 6165 -19 277 310 84 15 chrX 12813268 12813471 -149786459 - L1M4 LINE L1 -3372 2774 2558 308 279 73 37 chrX 12813571 12813707 -149786223 - L1M4 LINE L1 -3732 2414 2274 690 57 11 0 chrX 12813754 12813842 -149786088 + L1PA5 LINE L1 11 99 -6047 * 30679 46 1 1 chrX 12813823 12817658 -149782272 + L1PA5 LINE L1 1081 4915 -1231 7438 29 6 0 chrX 12817664 12818760 -149781170 + L1PA5 LINE L1 5046 6146 -8 29 28 0 0 chrX 12818760 12818796 -149781134 + AT_rich Low_complexity Low_complexity 1 36 0 316 138 31 0 chrX 12819320 12819385 -149780545 + (TA)n Simple_repeat Simple_repeat 1 67 0 2315 93 3 10 chrX 12819385 12819686 -149780244 - AluSp SINE Alu -14 299 1 263 353 69 0 chrX 12819861 12819977 -149779953 + L2 LINE L2 2616 2739 -575 572 370 68 25 chrX 12820097 12820462 -149779468 + L2 LINE L2 2892 3272 0 317 23 0 23 chrX 12821283 12821326 -149778604 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 394 141 0 73 chrX 12823052 12823243 -149776687 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 650 112 0 74 chrX 12823290 12823649 -149776281 + (TA)n Simple_repeat Simple_repeat 1 332 0 603 136 0 61 chrX 12823708 12824055 -149775875 + (TA)n Simple_repeat Simple_repeat 1 325 0 316 138 16 65 chrX 12824038 12824161 -149775769 + (TATATG)n Simple_repeat Simple_repeat 4 120 0 * 307 285 23 0 chrX 12824380 12824510 -149775420 + L1P5 LINE L1 5299 5431 -720 440 293 113 35 chrX 12824535 12824968 -149774962 + L1ME3 LINE L1 5527 5993 -128 500 282 141 19 chrX 12827925 12828131 -149771799 + LTR16C LTR ERVL 256 486 -5 676 156 8 0 chrX 12829080 12829202 -149770728 + L1MD3 LINE L1 7868 7990 -5 235 167 19 0 chrX 12830464 12830518 -149769412 - L1MA8 LINE L1 -3 6288 6234 30 59 0 0 chrX 12830852 12830903 -149769027 + AT_rich Low_complexity Low_complexity 1 51 0 1550 124 0 0 chrX 12830906 12831148 -149768782 - L1MA4 LINE L1 -16 6284 6043 495 304 99 5 chrX 12832541 12832732 -149767198 + MIR SINE MIR 46 254 -8 193 348 22 11 chrX 12833392 12833481 -149766449 + MIR SINE MIR 2 91 -171 697 200 133 0 chrX 12834386 12834542 -149765388 - MER5A DNA MER1_type -6 183 4 2423 153 13 13 chrX 12834568 12834953 -149764977 + L1M1 LINE L1 374 758 -6807 1011 135 26 0 chrX 12834949 12835105 -149764825 - L1M1 LINE L1 -7391 174 15 * 1310 244 134 6 chrX 12835106 12835697 -149764233 - L1MC3 LINE L1 -743 5403 5224 2514 116 14 3 chrX 12835814 12836185 -149763745 - THE1C LTR MaLR 0 375 1 23 0 0 0 chrX 12836340 12836363 -149763567 + AT_rich Low_complexity Low_complexity 1 23 0 279 290 271 0 chrX 12836926 12837033 -149762897 - L2 LINE L2 0 3272 3137 182 333 0 0 chrX 12887316 12887367 -149712563 + L2 LINE L2 3261 3311 -2 2432 191 26 51 chrX 12888601 12889129 -149710801 + MLT2B3 LTR ERVL 1 515 -39 14729 111 27 8 chrX 12889133 12891348 -149708582 - Tigger1 DNA MER2_type 0 2418 162 1027 93 0 0 chrX 12891347 12891487 -149708443 - Tigger1 DNA MER2_type -527 1891 1752 * 1069 129 13 0 chrX 12891484 12891639 -149708291 - Tigger1 DNA MER2_type -2260 158 2 318 82 82 0 chrX 12891639 12891687 -149708243 + MLT2B3 LTR ERVL 469 520 0 225 0 0 0 chrX 12892206 12892231 -149707699 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chrX 12892591 12892628 -149707302 + AT_rich Low_complexity Low_complexity 1 37 0 335 301 21 0 chrX 12893048 12893141 -149706789 - MIR SINE MIR -66 142 48 229 332 48 102 chrX 12893401 12893588 -149706342 - L2 LINE L2 -62 3210 3034 1397 346 118 12 chrX 12893672 12894648 -149705282 - L2 LINE L2 -417 2897 1819 312 246 0 0 chrX 12894637 12894706 -149705224 + MIR3 SINE MIR 139 207 -1 * 2264 110 0 0 chrX 12894798 12895099 -149704831 + AluSc SINE Alu 1 301 -8 616 248 147 0 chrX 12895578 12895735 -149704195 + MER5A DNA MER1_type 9 188 -1 21 57 0 0 chrX 12895833 12895868 -149704062 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chrX 12896013 12896043 -149703887 + AT_rich Low_complexity Low_complexity 1 30 0 264 130 0 0 chrX 12898556 12898602 -149701328 + (CAT)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chrX 12900518 12900547 -149699383 + AT_rich Low_complexity Low_complexity 1 29 0 389 236 211 25 chrX 12905611 12905772 -149694158 + MIR SINE MIR 1 191 -71 266 329 0 12 chrX 12907466 12907548 -149692382 - L2 LINE L2 -1 3271 3191 804 291 54 12 chrX 12907813 12908054 -149691876 - LTR33 LTR ERVL -270 251 1 256 232 20 0 chrX 12908376 12908475 -149691455 + GA-rich Low_complexity Low_complexity 2 102 0 222 326 12 12 chrX 12909381 12909467 -149690463 + MER5A DNA MER1_type 3 88 -101 182 313 61 40 chrX 12909416 12909515 -149690415 - MER5A DNA MER1_type -26 163 63 * 5884 130 18 17 chrX 12909524 12910427 -149689503 - MER49 LTR ERV1 -19 904 1 332 278 103 0 chrX 12910607 12910704 -149689226 + MIR SINE MIR 35 141 -67 189 0 0 0 chrX 12910704 12910725 -149689205 + (A)n Simple_repeat Simple_repeat 1 21 0 22 70 0 0 chrX 12911262 12911305 -149688625 + AT_rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chrX 12912244 12912288 -149687642 + AT_rich Low_complexity Low_complexity 1 44 0 2239 178 13 5 chrX 12912610 12913003 -149686927 - MSTD LTR MaLR 0 396 1 304 273 124 0 chrX 12914914 12915035 -149684895 - LTR16A1 LTR ERVL 0 457 322 399 340 200 14 chrX 12915064 12915429 -149684501 + L2 LINE L2 2836 3268 -4 691 336 177 26 chrX 12916690 12917898 -149682032 - L2 LINE L2 -406 2908 1519 810 221 80 19 chrX 12918450 12918663 -149681267 - MIR SINE MIR -15 247 22 313 355 111 32 chrX 12919820 12920037 -149679893 - MIR SINE MIR -25 237 4 1079 313 50 5 chrX 12921078 12921462 -149678468 + LTR16C LTR ERVL 61 461 -30 2045 162 44 10 chrX 12922064 12922472 -149677458 - LTR37A LTR ERV1 -4 422 1 681 289 19 29 chrX 12922736 12922944 -149676986 - MIR SINE MIR -56 206 1 364 263 84 21 chrX 12923320 12923415 -149676515 - L2 LINE L2 -3 3310 3210 231 191 0 0 chrX 12924393 12924435 -149675495 + L2 LINE L2 3270 3311 -2 2752 35 0 0 chrX 12924567 12924878 -149675052 - AluY SINE Alu 0 311 1 1162 175 5 31 chrX 12925105 12925328 -149674602 + MER20 DNA MER1_type 2 218 -1 364 186 41 21 chrX 12925933 12926030 -149673900 - MER94 DNA DNA 0 134 36 2286 103 0 0 chrX 12926289 12926580 -149673350 - AluSx SINE Alu -13 299 9 2179 80 53 10 chrX 12926883 12927182 -149672748 - AluSx SINE Alu 0 312 1 660 102 0 0 chrX 12927182 12927280 -149672650 - AluSp/q SINE Alu -6 307 210 1851 124 64 24 chrX 12927991 12928289 -149671641 + AluJb SINE Alu 1 310 -2 1122 202 20 0 chrX 12928841 12929044 -149670886 + MER58A DNA MER1_type 1 207 -17 241 294 11 11 chrX 12929514 12929606 -149670324 - MER103 DNA DNA -3 163 72 5952 222 93 44 chrX 12929661 12929977 -149669953 + L1MB4 LINE L1 74 373 -6271 2085 164 34 21 chrX 12929977 12930362 -149669568 - MLT1B LTR MaLR 0 390 1 5952 222 93 44 chrX 12930362 12930727 -149669203 + L1MB4 LINE L1 373 719 -5925 228 86 0 0 chrX 12930727 12930762 -149669168 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 5952 222 93 44 chrX 12930762 12933981 -149665949 + L1MB4 LINE L1 719 4211 -2433 1420 202 70 15 chrX 12933982 12934383 -149665547 - MER54B LTR ERVL 0 793 472 6225 197 31 35 chrX 12934633 12935874 -149664056 + L1MB4 LINE L1 4210 5454 -1224 2433 99 0 0 chrX 12935874 12936186 -149663744 + AluSx SINE Alu 1 312 0 6225 197 31 35 chrX 12936186 12936436 -149663494 + L1MB4 LINE L1 5454 5703 -975 2214 135 0 0 chrX 12936436 12936748 -149663182 + AluSx SINE Alu 1 312 0 6225 197 31 35 chrX 12936748 12937679 -149662251 + L1MB4 LINE L1 5703 6614 -64 23 0 0 0 chrX 12937683 12937706 -149662224 + AT_rich Low_complexity Low_complexity 1 23 0 267 244 64 0 chrX 12937776 12937854 -149662076 - MER103 DNA DNA -81 85 3 502 198 0 0 chrX 12937985 12938081 -149661849 - MER5A DNA MER1_type -85 104 9 303 340 0 9 chrX 12938474 12938580 -149661350 + GA-rich Low_complexity Low_complexity 3 107 0 353 258 34 11 chrX 12938999 12939088 -149660842 + MIR SINE MIR 66 156 -106 354 308 96 54 chrX 12939352 12939592 -149660338 + MIR SINE MIR 3 252 -10 2265 93 3 0 chrX 12942666 12942955 -149656975 - AluSx SINE Alu -14 298 9 1369 187 64 34 chrX 12942955 12943222 -149656708 - AluJo SINE Alu -35 277 3 925 229 21 0 chrX 12944519 12944711 -149655219 - MER58A DNA MER1_type -1 223 28 524 211 11 0 chrX 12944705 12944800 -149655130 - MER58A DNA MER1_type -9 98 3 * 1370 197 84 29 chrX 12944921 12945266 -149654664 - MLT1A1 LTR MaLR -1 364 1 2091 123 7 0 chrX 12946799 12947091 -149652839 - AluSx SINE Alu -16 296 3 183 42 0 0 chrX 12947372 12947396 -149652534 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 551 246 9 0 chrX 12947522 12947632 -149652298 + MER81 DNA DNA 1 111 -3 360 0 0 0 chrX 12949230 12949270 -149650660 + (CA)n Simple_repeat Simple_repeat 1 40 0 233 285 137 50 chrX 12949283 12949451 -149650479 + MIR3 SINE MIR 8 198 -10 3614 21 5 0 chrX 12949542 12949966 -149649964 - L1PA3 LINE L1 -11 6144 5719 427 271 147 49 chrX 12950042 12950205 -149649725 + MIR SINE MIR 3 195 -67 1174 219 18 0 chrX 12950205 12950424 -149649506 - MER58A DNA MER1_type -1 223 1 427 271 147 49 chrX 12950424 12950485 -149649445 + MIR SINE MIR 195 249 -13 3576 74 9 47 chrX 12950528 12950920 -149649010 + L1PA15 LINE L1 5390 5758 -407 2292 94 0 7 chrX 12950920 12951227 -149648703 + AluSg SINE Alu 1 305 -5 3576 74 9 47 chrX 12951227 12951362 -149648568 + L1PA15 LINE L1 5758 5897 -268 1717 134 0 4 chrX 12951421 12951682 -149648248 + L1PA15 LINE L1 5901 6160 -5 217 242 97 16 chrX 12953909 12953971 -149645959 - L3b LINE CR1 -90 1493 1427 230 250 14 56 chrX 12954430 12954502 -149645428 - MIR SINE MIR -118 90 22 6892 168 20 7 chrX 12954567 12955369 -149644561 - L1PA16 LINE L1 -314 5852 5062 1970 141 17 3 chrX 12955369 12955667 -149644263 - AluSx SINE Alu -10 302 1 6892 168 20 7 chrX 12955667 12956808 -149643122 - L1PA16 LINE L1 -1104 5062 3884 2087 90 0 47 chrX 12956841 12957141 -149642789 + AluSc SINE Alu 1 286 -23 342 281 11 0 chrX 12957146 12957235 -149642695 - L1MC4 LINE L1 -1339 6703 6614 2114 164 31 41 chrX 12958626 12959196 -149640734 - MLT2A2 LTR ERVL 0 554 1 265 287 79 50 chrX 12959490 12959591 -149640339 + MIR3 SINE MIR 105 208 0 1896 155 3 7 chrX 12959852 12960148 -149639782 + AluJb SINE Alu 1 295 -17 227 231 143 44 chrX 12961049 12961140 -149638790 + MIR SINE MIR 33 132 -76 180 0 0 0 chrX 12962404 12962424 -149637506 + (A)n Simple_repeat Simple_repeat 1 20 0 943 84 0 0 chrX 12964001 12964120 -149635810 + AluSg/x SINE Alu 174 292 -20 202 338 0 14 chrX 12964310 12964381 -149635549 + MER5A DNA MER1_type 119 188 -1 191 316 139 0 chrX 12964937 12965016 -149634914 - MIR SINE MIR -86 122 33 324 332 105 12 chrX 12965204 12965440 -149634490 + MIR SINE MIR 2 260 -2 201 282 39 13 chrX 12966272 12966350 -149633580 - L2 LINE L2 -86 3227 3148 587 235 50 6 chrX 12967091 12967270 -149632660 + L1ME3 LINE L1 5976 6162 0 29 60 0 0 chrX 12967958 12968008 -149631922 + AT_rich Low_complexity Low_complexity 1 50 0 1345 159 0 30 chrX 12968016 12968287 -149631643 - L1MA7 LINE L1 -10 6281 6019 252 209 15 15 chrX 12968455 12968522 -149631408 + T-rich Low_complexity Low_complexity 4 70 0 268 377 31 0 chrX 12969455 12969585 -149630345 - MIR3 SINE MIR -45 163 30 342 0 0 0 chrX 12969816 12969854 -149630076 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6199 87 0 0 chrX 12969894 12970880 -149629050 - L1PB1 LINE L1 0 6151 5164 1139 238 7 3 chrX 12970885 12971171 -149628759 + L1PB1 LINE L1 4873 5159 -987 450 0 0 0 chrX 12972007 12972057 -149627873 + (TG)n Simple_repeat Simple_repeat 2 51 0 210 267 13 40 chrX 12972602 12972677 -149627253 + MIR SINE MIR 120 192 -70 23 54 0 0 chrX 12976042 12976079 -149623851 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrX 12976364 12976385 -149623545 + AT_rich Low_complexity Low_complexity 1 21 0 349 259 46 0 chrX 12978797 12978905 -149621025 - L1ME4a LINE L1 -53 6068 5956 398 305 42 8 chrX 12979161 12979279 -149620651 + L2 LINE L2 3192 3313 0 555 101 0 0 chrX 12979323 12979402 -149620528 - MADE1 DNA Mariner 0 80 2 260 343 42 14 chrX 12979415 12979558 -149620372 + L3 LINE CR1 1318 1464 -113 6672 67 5 1 chrX 12979581 12980449 -149619481 + L1PA7 LINE L1 5282 6152 -2 322 329 37 25 chrX 12980507 12980668 -149619262 + MIR SINE MIR 100 262 0 191 370 0 0 chrX 12980681 12980754 -149619176 + L3 LINE CR1 1478 1550 -27 359 258 0 0 chrX 12980858 12980924 -149619006 - MER2 DNA MER2_type 0 345 280 1318 136 25 0 chrX 12980962 12981161 -149618769 - MER2 DNA MER2_type -134 211 8 340 328 8 8 chrX 12982591 12982713 -149617217 + L2 LINE L2 3192 3313 0 375 314 137 16 chrX 12982782 12982906 -149617024 - L2 LINE L2 0 3272 3134 233 263 12 25 chrX 12982975 12983055 -149616875 + GA-rich Low_complexity Low_complexity 1 79 0 194 327 59 0 chrX 12983056 12983157 -149616773 - L2 LINE L2 -219 3053 2947 674 235 40 88 chrX 12984869 12985322 -149614608 + MLT1H LTR MaLR 7 540 -9 2098 219 68 64 chrX 12986007 12986629 -149613301 - MLT1E3 LTR MaLR 0 624 1 1144 255 53 73 chrX 12986635 12987357 -149612573 + L2 LINE L2 2613 3311 -2 21 0 0 0 chrX 12987631 12987652 -149612278 + AT_rich Low_complexity Low_complexity 1 21 0 477 262 79 6 chrX 12988665 12988797 -149611133 + MER5B DNA MER1_type 5 130 -48 27840 53 6 2 chrX 12988829 12993185 -149606745 - L1PA5 LINE L1 0 6154 1779 374 183 0 0 chrX 12993185 12993245 -149606685 + MER5B DNA MER1_type 114 173 -5 1002 194 44 35 chrX 12993266 12993493 -149606437 - MIR SINE MIR -30 232 4 588 314 69 5 chrX 12993501 12993705 -149606225 - MIR SINE MIR -4 258 42 1223 278 12 30 chrX 12994186 12994592 -149605338 + L1ME3A LINE L1 5745 6143 -27 425 224 243 29 chrX 12994690 12994900 -149605030 - MIR SINE MIR 0 262 8 672 198 45 0 chrX 12995698 12995855 -149604075 + MER104 DNA Tc2 14 177 -3 621 350 110 21 chrX 12995873 12996588 -149603342 - L2 LINE L2 -41 3231 2456 2852 261 37 17 chrX 12997018 12998117 -149601813 - L1MEc LINE L1 -4105 2720 1451 1227 171 50 149 chrX 12998119 12998272 -149601658 - MLT1A1 LTR MaLR -2 363 196 369 57 38 0 chrX 12998272 12998325 -149601605 - L1PA6 LINE L1 0 6154 6100 1227 171 50 149 chrX 12998325 12998574 -149601356 - MLT1A1 LTR MaLR -169 196 1 1630 234 72 3 chrX 12998574 12999263 -149600667 - L1MEc LINE L1 -5231 1594 811 230 196 0 0 chrX 12999320 12999371 -149600559 + LTR66 LTR ERVL 389 439 -171 246 176 0 0 chrX 12999375 12999426 -149600504 + (TA)n Simple_repeat Simple_repeat 2 52 0 230 281 45 0 chrX 12999426 12999515 -149600415 - L1MC4 LINE L1 -1336 6706 6614 273 197 0 0 chrX 12999516 12999577 -149600353 + (TA)n Simple_repeat Simple_repeat 2 62 0 264 206 0 43 chrX 12999578 12999670 -149600260 + L1MC4 LINE L1 6615 6702 -1340 1276 256 9 16 chrX 12999698 13000018 -149599912 - L1MEc LINE L1 -6029 796 479 943 181 6 0 chrX 13000643 13000803 -149599127 - MER58B DNA MER1_type 0 341 181 1718 189 4 0 chrX 13000941 13001222 -149598708 + AluJo SINE Alu 1 282 -30 207 0 0 0 chrX 13001225 13001248 -149598682 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2097 139 16 49 chrX 13001324 13001668 -149598262 - THE1C LTR MaLR 0 375 44 2353 94 0 7 chrX 13001668 13001976 -149597954 - AluSx SINE Alu -6 306 1 2097 139 16 49 chrX 13001976 13002019 -149597911 - THE1C LTR MaLR -331 44 1 210 336 93 57 chrX 13002223 13002363 -149597567 + L2 LINE L2 3096 3240 -32 3033 135 170 116 chrX 13003695 13003918 -149596012 + L1MC3 LINE L1 6869 7078 -707 260 301 0 21 chrX 13003918 13004011 -149595919 + MLT1E3 LTR MaLR 35 125 -442 3033 135 170 116 chrX 13004011 13004564 -149595366 + L1MC3 LINE L1 7078 7784 -1 1310 216 44 19 chrX 13005224 13005544 -149594386 + MER46C DNA MER2_type 1 328 -10 22 35 0 0 chrX 13006541 13006570 -149593360 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 13006588 13006617 -149593313 + AT_rich Low_complexity Low_complexity 1 29 0 307 203 0 17 chrX 13006630 13006689 -149593241 + L2 LINE L2 3252 3309 -4 305 274 27 0 chrX 13007042 13007115 -149592815 + L2 LINE L2 3196 3270 -2 1971 226 164 34 chrX 13008215 13008942 -149590988 - L1ME3 LINE L1 -25 6137 5317 506 236 43 14 chrX 13009244 13009384 -149590546 + MIR SINE MIR 116 259 -3 1828 227 52 11 chrX 13010638 13011104 -149588826 + MLT1E3 LTR MaLR 139 595 0 591 322 52 26 chrX 13013777 13014010 -149585920 - MIR SINE MIR 0 262 24 703 259 42 47 chrX 13014060 13014296 -149585634 - MIR SINE MIR -16 246 12 192 357 14 0 chrX 13015149 13015219 -149584711 - MIR SINE MIR -111 97 27 204 313 50 38 chrX 13015746 13015826 -149584104 + MIR SINE MIR 132 212 -50 28 0 0 0 chrX 13015828 13015856 -149584074 + AT_rich Low_complexity Low_complexity 1 28 0 352 288 101 0 chrX 13015863 13016002 -149583928 - L2 LINE L2 -1 3312 3160 470 221 74 0 chrX 13016115 13016264 -149583666 + L1ME LINE L1 5001 5160 -986 1521 213 104 52 chrX 13016271 13016661 -149583269 + L1ME LINE L1 5186 5612 -554 2452 64 0 7 chrX 13016661 13016956 -149582974 + AluSc SINE Alu 1 293 -16 1521 213 104 52 chrX 13016956 13017151 -149582779 + L1ME LINE L1 5612 5795 -371 275 205 106 86 chrX 13017159 13017310 -149582620 + HAL1b LINE L1 681 834 -514 26 50 0 0 chrX 13019097 13019137 -149580793 + AT_rich Low_complexity Low_complexity 1 40 0 1958 188 9 3 chrX 13019137 13019483 -149580447 + MER7A DNA MER2_type 1 346 0 1614 208 13 37 chrX 13019541 13019921 -149580009 + MLT1A2 LTR MaLR 4 374 0 3938 144 22 0 chrX 13020120 13020743 -149579187 + Tigger1 DNA MER2_type 2 638 -1780 * 7214 97 15 80 chrX 13020740 13021570 -149578360 + Tigger1 DNA MER2_type 1255 1980 -438 1807 179 0 7 chrX 13021570 13021877 -149578053 + AluJo SINE Alu 1 305 -7 7214 97 15 80 chrX 13021877 13022290 -149577640 + Tigger1 DNA MER2_type 1980 2418 0 2388 107 30 30 chrX 13022451 13022815 -149577115 - THE1B LTR MaLR 0 364 1 594 247 169 0 chrX 13023692 13023846 -149576084 + MER5A DNA MER1_type 10 189 0 455 299 22 22 chrX 13023856 13023990 -149575940 - MER5B DNA MER1_type -2 176 43 187 337 11 22 chrX 13024259 13024351 -149575579 + MIR SINE MIR 59 149 -113 1003 284 28 71 chrX 13024377 13024842 -149575088 - L2 LINE L2 0 3313 2869 203 59 0 29 chrX 13025502 13025536 -149574394 + (ATG)n Simple_repeat Simple_repeat 3 35 0 390 310 184 6 chrX 13025657 13025831 -149574099 - MIR SINE MIR -43 219 15 1248 201 14 0 chrX 13026800 13027019 -149572911 + MER58A DNA MER1_type 1 222 -2 2003 253 129 24 chrX 13027678 13028668 -149571262 - L2 LINE L2 -5 3308 2236 286 323 97 0 chrX 13028699 13028792 -149571138 + L2 LINE L2 3179 3280 -33 297 0 0 0 chrX 13028825 13028858 -149571072 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2174 125 0 3 chrX 13029317 13029620 -149570310 + AluSx SINE Alu 1 302 -10 28 48 0 0 chrX 13029745 13029787 -149570143 + AT_rich Low_complexity Low_complexity 1 42 0 211 184 0 0 chrX 13029977 13030015 -149569915 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chrX 13030303 13030327 -149569603 + AT_rich Low_complexity Low_complexity 1 24 0 535 253 152 41 chrX 13030571 13031078 -149568852 - L1M4 LINE L1 -1701 4445 3883 292 287 125 42 chrX 13031087 13031244 -149568686 + L1M4 LINE L1 3519 3661 -2485 225 0 0 0 chrX 13031244 13031269 -149568661 + (CA)n Simple_repeat Simple_repeat 2 26 0 292 287 125 42 chrX 13031269 13031494 -149568436 + L1M4 LINE L1 3661 3933 -2213 528 320 133 18 chrX 13031507 13031844 -149568086 - L1M4 LINE L1 -2682 3464 3089 343 313 74 28 chrX 13031859 13032249 -149567681 - L1M4 LINE L1 -3139 3007 2600 207 246 49 0 chrX 13032428 13032489 -149567441 + L2 LINE L2 3250 3313 0 211 306 59 0 chrX 13033094 13033179 -149566751 + MIR3 SINE MIR 104 193 -15 190 306 16 16 chrX 13033402 13033464 -149566466 - L3 LINE CR1 -19 1558 1497 210 298 29 77 chrX 13033599 13033703 -149566227 + MIR SINE MIR 27 125 -83 723 240 14 37 chrX 13034376 13034593 -149565337 - MIR SINE MIR -1 261 50 927 244 5 24 chrX 13035043 13035256 -149564674 - MER58A DNA MER1_type -15 209 1 1919 209 65 83 chrX 13035565 13036169 -149563761 - MLT1E LTR MaLR 0 593 1 2111 130 72 17 chrX 13036220 13036565 -149563365 - THE1B LTR MaLR 0 364 1 11701 92 9 5 chrX 13036565 13038137 -149561793 - THE1B-int LTR MaLR 0 1580 1 2348 111 48 17 chrX 13038137 13038490 -149561440 - THE1B LTR MaLR 0 364 1 818 312 97 17 chrX 13039062 13039411 -149560519 - LTR16C LTR ERVL -25 466 90 199 100 33 0 chrX 13039572 13039602 -149560328 + L2 LINE L2 3265 3295 -18 376 356 96 5 chrX 13039751 13039939 -149559991 - MIR3 SINE MIR 0 208 4 382 290 61 23 chrX 13041758 13041889 -149558041 + MIR SINE MIR 20 155 -107 410 343 81 10 chrX 13042208 13042406 -149557524 - MIR SINE MIR -19 243 32 188 135 27 0 chrX 13042465 13042502 -149557428 + CT-rich Low_complexity Low_complexity 1 38 0 340 145 0 0 chrX 13043950 13044012 -149555918 - L1PB4 LINE L1 -2 6154 6093 192 326 53 38 chrX 13045014 13045146 -149554784 - L2 LINE L2 -7 3306 3173 960 241 14 18 chrX 13045351 13045571 -149554359 - MER20 DNA MER1_type 0 219 1 1087 202 28 0 chrX 13045631 13045844 -149554086 - MER20 DNA MER1_type 0 219 1 356 261 174 0 chrX 13046518 13046633 -149553297 - MLT1J2 LTR MaLR -52 398 264 252 0 0 0 chrX 13046828 13046856 -149553074 + (CCA)n Simple_repeat Simple_repeat 2 29 0 1039 234 28 0 chrX 13047690 13047908 -149552022 - MER58A DNA MER1_type 0 224 1 206 294 103 0 chrX 13048448 13048516 -149551414 + L3b LINE CR1 1104 1178 -405 592 52 0 0 chrX 13048795 13048872 -149551058 - L1PA5 LINE L1 -13 6141 6065 275 83 0 21 chrX 13049060 13049108 -149550822 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 250 195 24 0 chrX 13049109 13049191 -149550739 + (TCCA)n Simple_repeat Simple_repeat 2 85 0 2282 106 0 3 chrX 13049336 13049639 -149550291 + AluSx SINE Alu 1 302 -10 528 200 0 0 chrX 13049639 13049759 -149550171 + (TA)n Simple_repeat Simple_repeat 1 120 0 296 403 50 35 chrX 13049818 13050019 -149549911 - L2 LINE L2 -143 3129 2926 7411 39 10 0 chrX 13050279 13051536 -149548394 - L1PA5 LINE L1 -1 6153 4892 799 21 0 0 chrX 13051542 13051638 -149548292 + L1PA3 LINE L1 6060 6155 0 21 36 0 0 chrX 13051762 13051790 -149548140 + AT_rich Low_complexity Low_complexity 1 28 0 27994 57 5 1 chrX 13051790 13056667 -149543263 - L1PA5 LINE L1 -1240 4906 11 800 234 38 19 chrX 13056681 13056890 -149543040 - MIR SINE MIR -42 220 8 327 287 112 21 chrX 13056907 13057193 -149542737 + L1ME4a LINE L1 5590 5901 -220 584 259 141 12 chrX 13057239 13057409 -149542521 + MIR SINE MIR 37 228 -34 25 65 0 0 chrX 13057890 13057936 -149541994 + AT_rich Low_complexity Low_complexity 1 46 0 793 125 69 0 chrX 13058016 13058160 -149541770 - L1MA8 LINE L1 -5 6286 6133 231 161 0 0 chrX 13058379 13058435 -149541495 + CT-rich Low_complexity Low_complexity 1 56 0 876 152 62 0 chrX 13058756 13058934 -149540996 + MER53 DNA DNA 1 189 0 534 70 0 0 chrX 13058999 13059070 -149540860 + (TG)n Simple_repeat Simple_repeat 2 72 0 628 240 29 0 chrX 13059269 13059440 -149540490 + MER5B DNA MER1_type 3 178 0 260 312 39 58 chrX 13060245 13060399 -149539531 - MER5A DNA MER1_type -6 183 33 * 315 297 48 48 chrX 13060274 13060419 -149539511 + MER5A DNA MER1_type 44 188 -1 502 268 21 0 chrX 13060452 13060594 -149539336 + MER117 DNA MER1_type 1 145 -52 1701 263 71 20 chrX 13060626 13060693 -149539237 + L1MEc LINE L1 2086 2148 -4067 725 22 0 0 chrX 13060693 13060783 -149539147 + L1PA3 LINE L1 6066 6155 0 1701 263 71 20 chrX 13060783 13061836 -149538094 + L1MEc LINE L1 2148 3231 -2984 275 296 120 0 chrX 13061844 13061986 -149537944 - L2 LINE L2 -1403 1911 1753 289 286 71 0 chrX 13062054 13062138 -149537792 - L2 LINE L2 -4 3309 3220 * 367 303 210 14 chrX 13062106 13062396 -149537534 - L2 LINE L2 -431 2883 2537 448 286 8 16 chrX 13062399 13062525 -149537405 - L2 LINE L2 -1 3312 3188 * 1218 328 118 65 chrX 13062522 13064497 -149535433 - L2 LINE L2 -773 2541 461 537 210 0 0 chrX 13064834 13064934 -149534996 - MIR SINE MIR 0 262 163 207 0 0 0 chrX 13065414 13065437 -149534493 + (GCATG)n Simple_repeat Simple_repeat 1 23 0 244 228 18 0 chrX 13065753 13065810 -149534120 - MIR SINE MIR -102 160 103 501 201 98 18 chrX 13065867 13066031 -149533899 - MER96B DNA MER1_type? -238 179 3 27 0 0 0 chrX 13066085 13066112 -149533818 + AT_rich Low_complexity Low_complexity 1 27 0 2339 96 3 13 chrX 13066124 13066437 -149533493 + AluSx SINE Alu 1 310 -2 1999 147 45 3 chrX 13067171 13067546 -149532384 - L1MA6 LINE L1 0 6300 5910 1654 84 16 4 chrX 13067546 13067795 -149532135 + L1PA13 LINE L1 5833 6084 -79 367 324 55 103 chrX 13067883 13068895 -149531035 - L2 LINE L2 -1035 2279 1316 722 232 19 0 chrX 13069077 13069232 -149530698 - MER45A DNA AcHobo -20 158 1 283 354 16 16 chrX 13069748 13069875 -149530055 - L2 LINE L2 -238 3034 2908 1764 190 56 58 chrX 13070307 13070452 -149529478 - MLT1D LTR MaLR -7 498 354 3197 139 17 2 chrX 13070452 13070992 -149528938 - LTR55 LTR ERV 0 548 1 1764 190 56 58 chrX 13070992 13071345 -149528585 - MLT1D LTR MaLR -151 354 1 856 267 112 25 chrX 13071362 13071729 -149528201 + LTR16C LTR ERVL 90 488 -3 188 340 94 28 chrX 13072479 13072585 -149527345 - L2 LINE L2 -1 3312 3200 1115 177 9 44 chrX 13073020 13073246 -149526684 + MER20 DNA MER1_type 1 218 -1 891 195 12 0 chrX 13073725 13073894 -149526036 + MER5B DNA MER1_type 4 174 -4 508 223 10 0 chrX 13073895 13073998 -149525932 + MER5A DNA MER1_type 4 107 -82 580 301 76 17 chrX 13074932 13075168 -149524762 + MIR SINE MIR 3 252 -10 508 169 85 0 chrX 13075191 13075309 -149524621 - L1PA16 LINE L1 -49 6117 5990 293 206 0 149 chrX 13075332 13075473 -149524457 - MER112 DNA MER1_type -109 151 32 1590 142 18 36 chrX 13075544 13075997 -149523933 - L1MA9 LINE L1 0 6334 5902 2407 76 3 0 chrX 13076382 13076685 -149523245 + AluSp SINE Alu 1 304 -9 841 179 7 0 chrX 13076816 13076961 -149522969 + FRAM SINE Alu 1 146 -30 306 49 0 0 chrX 13077448 13077489 -149522441 - tRNA-Cys-TGC tRNA tRNA -34 41 1 669 320 58 50 chrX 13078586 13078964 -149520966 - L3 LINE CR1 -53 1524 1144 698 251 81 9 chrX 13079332 13079555 -149520375 - MIR SINE MIR -8 254 16 1323 133 18 18 chrX 13079897 13080115 -149519815 - MER20 DNA MER1_type 0 219 2 359 339 86 19 chrX 13080306 13080563 -149519367 - MLT2E LTR ERVL 0 628 355 368 268 35 42 chrX 13080585 13080727 -149519203 - MLT2E LTR ERVL -454 174 34 470 150 13 0 chrX 13081405 13081494 -149518436 + MER58 DNA MER1_type 120 2420 0 709 249 156 69 chrX 13081495 13081829 -149518101 - L2 LINE L2 -450 2864 2502 1016 217 9 0 chrX 13081945 13082162 -149517768 + MER20 DNA MER1_type 1 219 0 261 337 83 91 chrX 13083162 13083560 -149516370 - L2 LINE L2 -41 3231 2837 910 226 6 0 chrX 13083633 13083810 -149516120 - MER45A DNA AcHobo 0 178 1 412 305 40 33 chrX 13083986 13084137 -149515793 - MIR3 SINE MIR -53 155 4 182 356 82 41 chrX 13084327 13084473 -149515457 - L2 LINE L2 -13 3259 3108 182 322 68 0 chrX 13084799 13084858 -149515072 + L2 LINE L2 3183 3245 -27 2165 233 78 13 chrX 13086169 13086759 -149513171 - MLT1G LTR MaLR 0 590 1 5697 133 28 3 chrX 13086990 13088055 -149511875 + L1MA5 LINE L1 5203 6294 -6 1698 162 48 10 chrX 13088577 13088867 -149511063 + AluJb SINE Alu 1 301 -11 1357 92 100 0 chrX 13088949 13089178 -149510752 + L1MA7 LINE L1 6031 6282 -9 317 329 43 0 chrX 13089489 13089629 -149510301 - MLT1-int LTR MaLR -827 544 399 1157 225 142 87 chrX 13089813 13090364 -149509566 - MLT1G LTR MaLR -6 584 9 882 318 157 26 chrX 13090814 13091738 -149508192 + L2 LINE L2 2234 3273 -40 263 241 78 43 chrX 13091733 13091849 -149508081 + L2 LINE L2 3026 3145 -168 * 223 145 65 0 chrX 13091862 13091924 -149508006 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 623 196 87 7 chrX 13091924 13092062 -149507868 + L2 LINE L2 3162 3310 -3 2421 100 0 0 chrX 13092071 13092380 -149507550 + AluSq SINE Alu 1 309 -4 382 300 10 10 chrX 13092749 13092849 -149507081 + MIR SINE MIR 32 131 -131 216 297 0 14 chrX 13092950 13093024 -149506906 - MIR3 SINE MIR -49 159 87 188 283 19 0 chrX 13094322 13094375 -149505555 - L2 LINE L2 -1 3271 3218 389 256 154 26 chrX 13094850 13095006 -149504924 - MER5B DNA MER1_type 0 178 3 364 335 46 12 chrX 13095006 13095161 -149504769 - MIR3 SINE MIR -38 170 10 351 299 24 16 chrX 13095568 13095695 -149504235 + L2 LINE L2 3181 3308 -5 1624 130 8 16 chrX 13095877 13096124 -149503806 + AluJb SINE Alu 44 288 -24 22 35 0 0 chrX 13097320 13097349 -149502581 + AT_rich Low_complexity Low_complexity 1 29 0 193 167 0 0 chrX 13097496 13097532 -149502398 + L2 LINE L2 3222 3257 -15 234 0 0 0 chrX 13097534 13097560 -149502370 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 531 0 0 0 chrX 13098619 13098678 -149501252 + (CA)n Simple_repeat Simple_repeat 2 60 0 24 0 0 0 chrX 13099447 13099471 -149500459 + AT_rich Low_complexity Low_complexity 1 24 0 9187 77 15 0 chrX 13099616 13101641 -149498289 - L1PA7 LINE L1 -5 6149 4106 24 53 0 0 chrX 13101648 13101686 -149498244 + AT_rich Low_complexity Low_complexity 1 38 0 231 188 0 0 chrX 13102001 13102049 -149497881 + MER93b LTR ERV1 98 145 -228 10658 80 2 12 chrX 13102052 13104419 -149495511 - L1P3 LINE L1 -4098 2363 11 2134 109 17 7 chrX 13104602 13104895 -149495035 + AluSc SINE Alu 1 296 -13 325 291 270 7 chrX 13105256 13105404 -149494526 + MIR SINE MIR 61 247 -15 1208 288 72 40 chrX 13107971 13108245 -149491685 + L2 LINE L2 2676 2940 -373 1213 216 0 0 chrX 13108245 13108467 -149491463 - MER58A DNA MER1_type -2 222 1 1208 288 72 40 chrX 13108467 13108675 -149491255 + L2 LINE L2 2940 3199 -114 300 120 0 0 chrX 13108675 13108725 -149491205 + (CA)n Simple_repeat Simple_repeat 2 51 0 1208 288 72 40 chrX 13108725 13108842 -149491088 + L2 LINE L2 3199 3311 -2 1115 229 31 47 chrX 13109034 13109353 -149490577 - ERVL LTR ERVL -533 5231 4918 587 224 102 37 chrX 13109413 13109659 -149490271 - LTR37B LTR ERV1 -9 459 198 250 325 53 9 chrX 13109869 13109983 -149489947 - MIR3 SINE MIR -83 125 7 238 343 131 11 chrX 13110106 13110281 -149489649 + MIR SINE MIR 19 214 -48 238 188 141 16 chrX 13110710 13110774 -149489156 + MIR SINE MIR 85 156 -106 202 264 28 14 chrX 13110861 13110933 -149488997 - MIR SINE MIR -106 156 84 698 248 7 0 chrX 13111054 13111195 -149488735 - MIR SINE MIR -119 143 2 1536 199 79 24 chrX 13111418 13111799 -149488131 - MLT1C LTR MaLR -58 409 8 518 324 87 21 chrX 13111878 13112119 -149487811 + MIR SINE MIR 6 262 0 1923 138 66 39 chrX 13112894 13113257 -149486673 - MER93b LTR ERV1 0 373 1 2612 58 0 3 chrX 13113415 13113727 -149486203 - AluY SINE Alu 0 311 1 209 301 163 41 chrX 13114559 13114682 -149485248 + MIR SINE MIR 89 226 -36 1397 252 90 22 chrX 13115798 13116254 -149483676 + MLT1E LTR MaLR 107 593 0 488 259 102 7 chrX 13116458 13116605 -149483325 - MIR3 SINE MIR -14 194 34 28 29 0 0 chrX 13117296 13117331 -149482599 + AT_rich Low_complexity Low_complexity 1 35 0 248 269 27 101 chrX 13117502 13117651 -149482279 + MIR SINE MIR 99 236 -26 702 291 111 7 chrX 13117967 13118273 -149481657 - MLT1J2 LTR MaLR 0 450 113 257 315 45 36 chrX 13118622 13118733 -149481197 + MIR SINE MIR 20 131 -131 1796 216 60 21 chrX 13118819 13119332 -149480598 + L1ME3A LINE L1 5586 6118 -52 954 237 36 80 chrX 13120538 13120708 -149479222 - L1MC4 LINE L1 -6 8036 7860 441 0 0 0 chrX 13120708 13120757 -149479173 + (CA)n Simple_repeat Simple_repeat 2 50 0 954 237 36 80 chrX 13120757 13121109 -149478821 - L1MC4 LINE L1 -182 7860 7537 411 273 142 52 chrX 13121141 13121529 -149478401 - MLT1H LTR MaLR -8 541 119 582 277 73 5 chrX 13121667 13121887 -149478043 + L1M2c LINE L1 355 589 -6200 825 151 68 10 chrX 13121922 13122114 -149477816 + L1MA6 LINE L1 3285 3487 -2659 274 115 0 33 chrX 13122416 13122477 -149477453 - L1PA15 LINE L1 -1 6164 6106 7871 163 40 33 chrX 13122477 13124258 -149475672 + L1MA6 LINE L1 3548 5341 -805 1862 159 30 3 chrX 13124271 13124605 -149475325 + LTR3b LTR ERVK 158 500 0 264 105 0 0 chrX 13124605 13124643 -149475287 + LTR3b LTR ERVK 463 500 0 2248 159 21 0 chrX 13124643 13125063 -149474867 + L1MA6 LINE L1 5338 5766 -534 * 9550 85 68 1 chrX 13125061 13127619 -149472311 + L1PBa LINE L1 19 2878 -3985 1959 82 0 0 chrX 13127618 13127900 -149472030 + L1P LINE L1 1870 2151 -3995 * 2720 128 87 2 chrX 13127900 13128389 -149471541 + L1MA6 LINE L1 5760 6295 -5 2274 104 0 19 chrX 13128414 13128732 -149471198 + AluSx SINE Alu 1 312 0 230 175 95 0 chrX 13128732 13128790 -149471140 + L1MB5 LINE L1 6106 6165 -9 934 153 0 0 chrX 13128889 13129026 -149470904 - FLAM_C SINE Alu -2 141 5 1044 175 3 164 chrX 13129687 13130035 -149469895 - MLT1A1 LTR MaLR -2 363 72 876 154 0 0 chrX 13130044 13130174 -149469756 - FLAM_C SINE Alu -13 130 1 289 227 67 0 chrX 13130174 13130249 -149469681 - MLT1A1 LTR MaLR -280 85 6 361 360 68 13 chrX 13130521 13130757 -149469173 + L2 LINE L2 2611 2859 -455 1390 253 84 10 chrX 13130885 13131375 -149468555 + L1ME3A LINE L1 5613 6138 -32 1509 197 56 122 chrX 13131750 13132385 -149467545 - MLT1E LTR MaLR -5 588 1 1043 246 100 4 chrX 13132415 13132686 -149467244 + MLT1F LTR MaLR 1 298 -244 897 127 67 0 chrX 13132686 13132851 -149467079 + MER53 DNA DNA 2 177 -12 731 216 62 46 chrX 13132883 13133124 -149466806 + MLT1F LTR MaLR 296 540 -2 940 186 67 29 chrX 13133660 13133870 -149466060 + MER20B DNA MER1_type 2 219 0 210 218 73 0 chrX 13134028 13134083 -149465847 - L2 LINE L2 0 3313 3255 29 28 0 0 chrX 13184446 13184482 -149415448 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chrX 13184620 13184663 -149415267 + AT_rich Low_complexity Low_complexity 1 43 0 281 274 82 7 chrX 13184787 13184922 -149415008 + L1M4 LINE L1 4900 5044 -1102 2280 75 0 0 chrX 13185154 13185459 -149414471 - AluY SINE Alu 0 305 1 279 0 0 0 chrX 13185488 13185519 -149414411 + (T)n Simple_repeat Simple_repeat 1 31 0 249 83 0 0 chrX 13186005 13186041 -149413889 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 333 336 9 0 chrX 13186723 13186830 -149413100 + MIR3 SINE MIR 53 160 -48 1041 208 19 14 chrX 13188542 13188754 -149411176 + MER20B DNA MER1_type 1 213 -6 250 328 86 11 chrX 13188934 13189108 -149410822 - MIR SINE MIR -30 232 46 735 249 112 43 chrX 13189279 13189618 -149410312 + LTR16A1 LTR ERVL 121 457 0 1326 168 127 72 chrX 13189697 13190043 -149409887 + MLT1A1 LTR MaLR 1 365 0 1507 171 25 25 chrX 13190918 13191234 -149408696 - MER58B DNA MER1_type 0 341 26 308 267 59 22 chrX 13191244 13191379 -149408551 - LTR16C LTR ERVL 0 491 352 2041 151 0 13 chrX 13191478 13191790 -149408140 + AluSx SINE Alu 1 308 -4 287 335 135 32 chrX 13192776 13193057 -149406873 + MLT1K LTR MaLR 124 433 -155 458 274 63 46 chrX 13193098 13193273 -149406657 - MER5A DNA MER1_type -3 186 9 466 277 84 0 chrX 13194010 13194176 -149405754 - MER20B DNA MER1_type -155 628 449 2209 149 22 74 chrX 13194193 13194258 -149405672 - MLT1D LTR MaLR -2 503 436 2379 78 0 3 chrX 13194258 13194554 -149405376 + AluSq SINE Alu 1 295 -18 2209 149 22 74 chrX 13194554 13194849 -149405081 - MLT1D LTR MaLR -69 436 172 4960 87 3 1 chrX 13194849 13195519 -149404411 + L1PA10 LINE L1 5497 6167 -1 2209 149 22 74 chrX 13195519 13195646 -149404284 - MLT1D LTR MaLR -333 172 40 1376 242 50 18 chrX 13195660 13196102 -149403828 - HERV16 LTR ERVL -3789 1207 752 450 257 114 0 chrX 13196116 13196256 -149403674 - HERV16 LTR ERVL -4839 157 2 827 223 48 77 chrX 13196270 13196607 -149403323 - LTR16A LTR ERVL -67 383 57 1951 121 57 62 chrX 13197596 13198016 -149401914 + L1MA7 LINE L1 5873 6290 -1 21 36 0 0 chrX 13198038 13198066 -149401864 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chrX 13198163 13198205 -149401725 + AT_rich Low_complexity Low_complexity 1 42 0 252 0 0 0 chrX 13198207 13198235 -149401695 + (TA)n Simple_repeat Simple_repeat 2 29 0 838 198 284 4 chrX 13198599 13198946 -149400984 - LTR50 LTR ERVL -215 580 53 833 174 0 35 chrX 13198946 13199118 -149400812 - MER3 DNA MER1_type -2 207 42 381 266 38 55 chrX 13199309 13199497 -149400433 - MIR SINE MIR -9 253 72 784 150 16 8 chrX 13199650 13199777 -149400153 + AluJo SINE Alu 7 134 -178 237 295 223 36 chrX 13200120 13200259 -149399671 + MIR SINE MIR 69 233 -29 637 203 0 8 chrX 13200355 13200473 -149399457 - L2 LINE L2 -5 3308 3192 303 326 83 23 chrX 13200652 13200784 -149399146 + MIR3 SINE MIR 8 147 -61 1741 196 122 7 chrX 13201436 13201855 -149398075 + MLT1C LTR MaLR 1 467 0 1749 138 100 9 chrX 13203519 13203868 -149396062 + L1MB8 LINE L1 5798 6178 0 275 85 21 0 chrX 13204321 13204368 -149395562 + (TTTG)n Simple_repeat Simple_repeat 4 51 0 441 321 121 46 chrX 13204439 13204828 -149395102 - L2 LINE L2 -696 2618 2201 513 251 78 22 chrX 13204834 13205022 -149394908 - MIR SINE MIR -49 213 18 259 318 108 37 chrX 13205771 13205985 -149393945 - L2 LINE L2 -1690 1624 1396 225 205 0 0 chrX 13206363 13206402 -149393528 - MER5B DNA MER1_type -3 175 137 986 203 13 12 chrX 13206405 13206623 -149393307 - MLT1F1 LTR MaLR -5 537 343 375 107 0 0 chrX 13206626 13206682 -149393248 - MLT2B1 LTR ERVL 0 520 465 225 0 0 0 chrX 13206682 13206707 -149393223 + (CA)n Simple_repeat Simple_repeat 2 26 0 407 70 120 0 chrX 13206786 13206944 -149392986 + (TA)n Simple_repeat Simple_repeat 1 177 0 384 138 0 0 chrX 13206967 13207032 -149392898 + (CA)n Simple_repeat Simple_repeat 1 65 0 2024 196 65 20 chrX 13207032 13207491 -149392439 - MLT2B1 LTR ERVL -40 480 1 1495 205 15 46 chrX 13207492 13207715 -149392215 - MLT1F1 LTR MaLR -246 321 93 2106 127 10 0 chrX 13207715 13208006 -149391924 + AluSx SINE Alu 1 294 -18 204 40 0 0 chrX 13208006 13208031 -149391899 + (GA)n Simple_repeat Simple_repeat 2 26 0 1495 205 15 46 chrX 13208031 13208133 -149391797 - MLT1F1 LTR MaLR -472 95 5 417 189 226 0 chrX 13208133 13208239 -149391691 - MER5B DNA MER1_type -34 144 15 2445 71 0 43 chrX 13208451 13208776 -149391154 - AluY SINE Alu 0 311 1 605 130 9 19 chrX 13209046 13209154 -149390776 + MLT2C1 LTR ERVL 1 107 -290 3412 128 10 0 chrX 13209204 13209711 -149390219 + MER41E LTR ERV1 1 512 0 311 175 0 0 chrX 13209739 13209796 -149390134 + MLT2B1 LTR ERVL 464 520 0 4625 159 43 4 chrX 13209796 13210625 -149389305 + MLT1-int LTR MaLR 1 862 -509 1125 207 41 48 chrX 13210626 13210921 -149389009 + MLT1C LTR MaLR 175 467 0 609 194 53 114 chrX 13211761 13212024 -149387906 - MER112 DNA MER1_type -6 254 8 328 336 73 73 chrX 13212496 13213208 -149386722 - L2 LINE L2 -260 3012 2285 7336 30 0 0 chrX 13214088 13214962 -149384968 + L1PA4 LINE L1 5282 6155 0 272 192 90 26 chrX 13217801 13217879 -149382051 - MLT1I LTR MaLR -12 397 315 7404 153 28 5 chrX 13218052 13219495 -149380435 + L1PB4 LINE L1 3161 4637 -1509 41838 41 5 3 chrX 13219509 13225644 -149374286 + L1PA6 LINE L1 6 6151 -3 204 40 0 0 chrX 13225690 13225715 -149374215 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 4597 114 35 1 chrX 13225750 13226488 -149373442 + L1PB4 LINE L1 5393 6155 -1 25 31 0 0 chrX 13226510 13226542 -149373388 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chrX 13226627 13226670 -149373260 + AT_rich Low_complexity Low_complexity 1 43 0 983 160 110 25 chrX 13226847 13227047 -149372883 - MER20 DNA MER1_type -1 218 2 528 213 98 0 chrX 13227156 13227278 -149372652 + MIR SINE MIR 59 192 -70 544 298 50 25 chrX 13228078 13228276 -149371654 - MIR3 SINE MIR -2 206 4 25 0 0 0 chrX 13228282 13228307 -149371623 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chrX 13228685 13228706 -149371224 + AT_rich Low_complexity Low_complexity 1 21 0 1898 189 35 5 chrX 13228934 13229367 -149370563 - Charlie5 DNA MER1_type 0 2622 2177 369 223 39 23 chrX 13229364 13229494 -149370436 - MER3 DNA MER1_type -41 168 37 * 677 318 73 10 chrX 13230114 13230416 -149369514 + L2 LINE L2 2555 2875 -439 227 213 13 0 chrX 13230486 13230561 -149369369 + CT-rich Low_complexity Low_complexity 1 76 0 193 341 141 33 chrX 13230564 13230840 -149369090 + L2 LINE L2 2920 3225 -88 456 186 48 24 chrX 13231110 13231234 -149368696 + L1MD3 LINE L1 7868 7994 -1 24 0 0 0 chrX 13231762 13231786 -149368144 + AT_rich Low_complexity Low_complexity 1 24 0 646 195 172 0 chrX 13232614 13232788 -149367142 + MER76 LTR ERV 485 688 0 266 333 12 9 chrX 13232788 13232898 -149367032 - MIR SINE MIR -80 128 21 446 276 61 41 chrX 13233326 13233388 -149366542 - L1MEc LINE L1 -3945 2618 2559 2300 88 3 10 chrX 13233388 13233696 -149366234 - AluSc SINE Alu -3 306 1 446 276 61 41 chrX 13233696 13233995 -149365935 - L1MEc LINE L1 -4004 2559 2250 * 458 194 20 0 chrX 13233993 13234091 -149365839 - L1ME2 LINE L1 -10 6154 6055 226 91 0 0 chrX 13234091 13234124 -149365806 - MER3 DNA MER1_type -160 49 17 2474 164 43 11 chrX 13234191 13234635 -149365295 - LTR32 LTR ERVL 0 471 14 790 206 158 26 chrX 13234652 13234924 -149365006 - L1ME2 LINE L1 -243 5921 5614 636 321 94 22 chrX 13235212 13235847 -149364083 - L1MEc LINE L1 -4659 1725 1045 225 160 100 0 chrX 13236845 13236895 -149363035 - L1ME2 LINE L1 -2369 5439 5385 341 301 97 25 chrX 13236975 13237254 -149362676 - L1ME2 LINE L1 -864 5282 4984 358 283 66 30 chrX 13237493 13237691 -149362239 - L1ME2 LINE L1 -1441 4705 4501 228 389 0 0 chrX 13238112 13238202 -149361728 - MER5B DNA MER1_type -3 175 86 6000 109 12 20 chrX 13238218 13239025 -149360905 - Tigger1 DNA MER2_type -1 2417 1617 1621 177 30 7 chrX 13239025 13239324 -149360606 - AluJb SINE Alu -6 306 1 6000 109 12 20 chrX 13239324 13239473 -149360457 - Tigger1 DNA MER2_type -801 1617 1468 * 7190 143 48 7 chrX 13239471 13240745 -149359185 - Tigger1 DNA MER2_type -1069 1349 24 271 342 54 9 chrX 13241513 13241624 -149358306 - L2 LINE L2 -13 3259 3144 624 333 46 67 chrX 13241798 13242231 -149357699 - L2 LINE L2 -337 2977 2554 1917 162 105 16 chrX 13242398 13242825 -149357105 - MLT1C LTR MaLR 0 467 3 718 189 164 0 chrX 13243688 13243847 -149356083 + MER5A DNA MER1_type 4 188 -1 358 177 11 215 chrX 13243936 13243979 -149355951 + MER5B DNA MER1_type 1 51 -127 1499 130 0 139 chrX 13243979 13244324 -149355606 + AluJb SINE Alu 1 297 -5 358 177 11 215 chrX 13244324 13244466 -149355464 + MER5B DNA MER1_type 51 148 -30 252 77 0 0 chrX 13245118 13245157 -149354773 + (CAT)n Simple_repeat Simple_repeat 3 41 0 1077 188 16 0 chrX 13245779 13245965 -149353965 - MER5A DNA MER1_type 0 189 1 3895 171 17 0 chrX 13246020 13246727 -149353203 + L1MB2 LINE L1 5426 6144 -27 837 229 62 58 chrX 13248063 13248239 -149351691 + MIR SINE MIR 1 180 -82 718 253 40 5 chrX 13248239 13248441 -149351489 + MER3 DNA MER1_type 1 209 0 837 229 62 58 chrX 13248441 13248522 -149351408 + MIR SINE MIR 180 259 -3 1993 139 6 22 chrX 13249323 13249640 -149350290 + AluSx SINE Alu 1 312 0 2274 76 3 23 chrX 13250169 13250471 -149349459 - AluSx SINE Alu -16 296 1 368 285 43 55 chrX 13250681 13250916 -149349014 - MLT1L LTR MaLR -372 243 12 202 216 0 0 chrX 13251639 13251676 -149348254 + A-rich Low_complexity Low_complexity 5 41 0 1182 98 4 145 chrX 13253477 13253732 -149346198 - MER20 DNA MER1_type 0 219 1 22 70 0 0 chrX 13253848 13253891 -149346039 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chrX 13254541 13254565 -149345365 + AT_rich Low_complexity Low_complexity 1 24 0 363 276 0 10 chrX 13256633 13256731 -149343199 + L1MC4 LINE L1 6696 6792 -1250 2427 216 91 39 chrX 13256731 13257547 -149342383 + L1MC5 LINE L1 7067 7924 -37 633 254 97 33 chrX 13257637 13257967 -149341963 + L1MEd LINE L1 905 1255 -4864 979 266 147 17 chrX 13257968 13258445 -149341485 + L1MEd LINE L1 3011 3425 -2704 7761 27 0 2 chrX 13258445 13259344 -149340586 + MER11D LTR ERVK 1 897 0 979 266 147 17 chrX 13259344 13259637 -149340293 + L1MEd LINE L1 3425 3881 -2248 1652 152 18 30 chrX 13260158 13260382 -149339548 + MER33 DNA MER1_type 1 221 -2364 2095 128 0 0 chrX 13260382 13260672 -149339258 + AluSx SINE Alu 1 290 -22 1652 152 18 30 chrX 13260672 13260775 -149339155 + MER33 DNA MER1_type 221 324 0 1229 207 0 33 chrX 13261522 13261792 -149338138 - MIR SINE MIR 0 262 2 228 289 124 0 chrX 13261900 13262021 -149337909 + MIR SINE MIR 121 256 -6 2339 77 0 7 chrX 13262486 13262785 -149337145 - AluSc SINE Alu -12 297 1 29 0 0 0 chrX 13263969 13263998 -149335932 + AT_rich Low_complexity Low_complexity 1 29 0 737 257 71 99 chrX 13265004 13265508 -149334422 - L1ME3A LINE L1 -25 6145 5661 269 292 0 22 chrX 13265589 13265678 -149334252 + MIR3 SINE MIR 96 182 -26 394 273 126 35 chrX 13265777 13265975 -149333955 - L1MEd LINE L1 -5009 1110 895 373 323 50 6 chrX 13265988 13266149 -149333781 - L1MEd LINE L1 -5382 737 570 354 332 96 26 chrX 13266388 13266701 -149333229 - L1MC4a LINE L1 -1954 5854 5520 319 143 18 0 chrX 13266946 13267002 -149332928 + MER58 DNA MER1_type 2361 2417 -3 562 288 74 49 chrX 13267100 13267531 -149332399 + L1MC4 LINE L1 7584 8025 -17 216 0 0 0 chrX 13268275 13268299 -149331631 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2258 87 0 16 chrX 13268428 13268737 -149331193 + AluSx SINE Alu 1 304 -8 498 206 0 20 chrX 13268872 13268974 -149330956 - FRAM SINE Alu -11 165 66 246 229 83 0 chrX 13268989 13269069 -149330861 - MIR SINE MIR -7 201 106 884 158 179 46 chrX 13270832 13271117 -149328813 - MER33 DNA MER1_type -1 323 1 1890 163 0 3 chrX 13271207 13271502 -149328428 - AluJo SINE Alu -18 294 1 988 110 7 7 chrX 13272171 13272316 -149327614 - AluSc SINE Alu -19 290 146 579 192 0 0 chrX 13272316 13272415 -149327515 - AluS SINE Alu -213 99 1 473 286 112 10 chrX 13272983 13273179 -149326751 - MIR SINE MIR 0 262 47 2344 109 0 0 chrX 13274171 13274483 -149325447 + AluSx SINE Alu 1 312 0 327 298 98 75 chrX 13276630 13276885 -149323045 - MIR SINE MIR 0 262 2 6690 140 34 26 chrX 13277036 13279206 -149320724 + L1MA6 LINE L1 4121 6294 -6 243 289 78 102 chrX 13279795 13279961 -149319969 + L2 LINE L2 2565 2726 -588 212 125 50 0 chrX 13280752 13280792 -149319138 + (CGGGG)n Simple_repeat Simple_repeat 1 42 0 253 385 49 35 chrX 13281416 13281704 -149318226 - L2 LINE L2 -427 2887 2596 319 302 209 5 chrX 13281708 13281923 -149318007 + L1ME LINE L1 5571 5829 -333 246 224 0 0 chrX 13281924 13281973 -149317957 + (TATG)n Simple_repeat Simple_repeat 3 51 0 909 194 47 0 chrX 13282168 13282359 -149317571 - MIR SINE MIR -33 229 30 982 153 35 50 chrX 13282757 13282959 -149316971 - MER20 DNA MER1_type -5 214 16 547 289 26 19 chrX 13285408 13285564 -149314366 - MIR3 SINE MIR -35 173 17 489 246 24 72 chrX 13285578 13285745 -149314185 + L2 LINE L2 2709 2867 -447 419 228 123 24 chrX 13285752 13285963 -149313967 + MER112 DNA MER1_type 19 250 -10 585 282 184 58 chrX 13285968 13286344 -149313586 + L2 LINE L2 2874 3296 -17 246 380 64 41 chrX 13287205 13287471 -149312459 - L2 LINE L2 -195 3077 2806 2306 81 7 0 chrX 13287662 13287959 -149311971 - AluSp SINE Alu -14 299 1 1317 66 18 0 chrX 13288044 13288210 -149311720 + AluY SINE Alu 127 295 -16 445 314 52 12 chrX 13288358 13288616 -149311314 - L1MC/D LINE L1 -440 5681 5472 316 68 0 0 chrX 13288827 13288871 -149311059 - MADE1 DNA Mariner -1 79 36 738 43 0 0 chrX 13288917 13289009 -149310921 - L1PA5 LINE L1 0 6154 6063 587 248 209 12 chrX 13289258 13289512 -149310418 - L1ME3A LINE L1 -218 6021 5718 977 235 42 0 chrX 13289512 13289729 -149310201 + Charlie1 DNA MER1_type 1 226 -2535 711 148 0 30 chrX 13289736 13289871 -149310059 + Charlie1 DNA MER1_type 2631 2761 0 559 283 62 55 chrX 13289871 13290179 -149309751 - L1ME3A LINE L1 -506 5725 5416 * 1044 253 149 81 chrX 13290157 13291202 -149308728 - L1ME3A LINE L1 -1438 4777 3662 329 302 89 45 chrX 13291283 13291462 -149308468 - L1ME3A LINE L1 -4583 1813 1627 2132 65 59 0 chrX 13292016 13292306 -149307624 + L1PA5 LINE L1 5761 6067 -87 2492 128 50 50 chrX 13292320 13292836 -149307094 + L1MA8 LINE L1 5769 6284 -7 210 71 0 0 chrX 13293012 13293040 -149306890 + (T)n Simple_repeat Simple_repeat 1 28 0 2293 79 0 0 chrX 13293134 13293424 -149306506 + AluSg1 SINE Alu 2 291 -18 462 302 103 16 chrX 13293923 13294376 -149305554 + L1MEd LINE L1 1283 1889 -854 553 290 75 61 chrX 13294743 13295588 -149304342 + L1MEd LINE L1 2293 3132 -3250 261 156 0 0 chrX 13295617 13295662 -149304268 + L1MEd LINE L1 3111 3155 -3227 298 312 64 17 chrX 13295679 13295852 -149304078 + L1M4 LINE L1 4000 4180 -1966 229 295 179 0 chrX 13296180 13296292 -149303638 - L2 LINE L2 -2 3311 3180 402 215 201 21 chrX 13296672 13296717 -149303213 + MER58C DNA MER1_type 46 82 -2338 327 104 0 0 chrX 13296717 13296765 -149303165 + (CA)n Simple_repeat Simple_repeat 2 49 0 234 0 0 0 chrX 13296765 13296791 -149303139 + (GA)n Simple_repeat Simple_repeat 1 26 0 402 215 201 21 chrX 13296791 13296888 -149303042 + MER58C DNA MER1_type 81 215 0 822 229 56 0 chrX 13296896 13297075 -149302855 + MER5A DNA MER1_type 1 189 0 37 0 0 0 chrX 13297911 13297948 -149301982 + AT_rich Low_complexity Low_complexity 1 37 0 462 36 0 0 chrX 13298414 13298470 -149301460 + (CA)n Simple_repeat Simple_repeat 2 57 0 2309 104 30 33 chrX 13298493 13298858 -149301072 + THE1B LTR MaLR 1 364 0 404 56 0 0 chrX 13298862 13298916 -149301014 + MLT2A2 LTR ERVL 400 453 0 261 119 0 0 chrX 13298983 13299025 -149300905 + (TG)n Simple_repeat Simple_repeat 2 43 0 283 159 0 0 chrX 13299083 13299127 -149300803 - MSTB2 LTR MaLR 0 457 414 1012 164 195 95 chrX 13299133 13299492 -149300438 - MSTD LTR MaLR -1 395 1 288 284 31 19 chrX 13299665 13299827 -149300103 + CT-rich Low_complexity Low_complexity 1 164 0 203 306 0 0 chrX 13300138 13300187 -149299743 - MIR SINE MIR -4 258 210 1792 195 163 14 chrX 13300192 13300622 -149299308 + Charlie1a DNA MER1_type 5 498 -957 197 337 0 22 chrX 13300651 13300740 -149299190 - MIR3 SINE MIR -8 200 114 217 277 128 21 chrX 13300856 13300950 -149298980 - MIR SINE MIR -51 211 108 234 62 0 0 chrX 13301113 13301145 -149298785 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 187 350 70 0 chrX 13301406 13301506 -149298424 - L2 LINE L2 -199 3073 2967 2239 96 7 0 chrX 13301736 13302087 -149297843 - AluSx SINE Alu 0 353 1 2261 145 48 24 chrX 13302359 13302780 -149297150 - MSTB1 LTR MaLR -1 431 1 308 61 20 0 chrX 13303591 13303640 -149296290 - L1MA3 LINE L1 -1 6304 6255 296 287 240 7 chrX 13303713 13303863 -149296067 + L3b LINE CR1 1233 1417 -166 1689 142 12 82 chrX 13304344 13304537 -149295393 - AluJo SINE Alu -4 308 146 2336 90 3 0 chrX 13304537 13304836 -149295094 - AluY SINE Alu -11 300 1 1689 142 12 82 chrX 13304836 13304973 -149294957 - AluJo SINE Alu -166 146 1 464 163 0 0 chrX 13305048 13305128 -149294802 + MADE1 DNA Mariner 1 80 0 182 330 49 44 chrX 13306767 13306970 -149292960 + L2 LINE L2 2772 2975 -339 594 276 40 47 chrX 13308220 13308517 -149291413 + L1ME4a LINE L1 5558 5852 -269 384 22 0 0 chrX 13309735 13309782 -149290148 + (CA)n Simple_repeat Simple_repeat 1 92 0 384 22 0 0 chrX 13309782 13309827 -149290103 + (CA)n Simple_repeat Simple_repeat 2 46 0 313 329 48 14 chrX 13310360 13310506 -149289424 + MARNA DNA Mariner 48 198 -388 228 135 0 0 chrX 13312187 13312224 -149287706 + (TA)n Simple_repeat Simple_repeat 1 37 0 830 160 8 0 chrX 13313448 13313579 -149286351 + FLAM_A SINE Alu 1 132 -1 2998 218 74 3 chrX 13313917 13314670 -149285260 + L1MB7 LINE L1 3167 3973 -2173 1373 225 131 82 chrX 13314761 13315282 -149284648 - MER77 LTR ERV1 -6 599 54 504 184 6 120 chrX 13315298 13315456 -149284474 + L1MB7 LINE L1 3973 4112 -2034 * 4587 179 39 19 chrX 13315454 13315567 -149284363 + L1MB7 LINE L1 4426 4535 -1649 1129 171 102 102 chrX 13315567 13315713 -149284217 + MER2 DNA MER2_type 1 146 -198 1798 171 13 3 chrX 13315713 13316012 -149283918 - AluSx SINE Alu -10 302 1 1129 171 102 102 chrX 13316012 13316209 -149283721 + MER2 DNA MER2_type 145 344 0 4587 179 39 19 chrX 13316209 13316963 -149282967 + L1MB7 LINE L1 4535 5272 -912 2197 113 3 0 chrX 13316963 13317254 -149282676 + AluSq SINE Alu 1 292 -21 4587 179 39 19 chrX 13317254 13318095 -149281835 + L1MB7 LINE L1 5272 6173 -11 454 86 0 0 chrX 13318440 13318498 -149281432 + Alu SINE Alu 230 287 -22 25 51 0 0 chrX 13319351 13319390 -149280540 + AT_rich Low_complexity Low_complexity 1 39 0 348 301 110 8 chrX 13319541 13319777 -149280153 - L1MC4a LINE L1 -1833 5975 5716 41 82 0 0 chrX 13320159 13320256 -149279674 + AT_rich Low_complexity Low_complexity 1 97 0 27 87 0 0 chrX 13320341 13320410 -149279520 + AT_rich Low_complexity Low_complexity 1 69 0 1089 268 91 30 chrX 13320481 13321093 -149278837 - L1MC4a LINE L1 -174 5992 5351 264 30 0 0 chrX 13321152 13321185 -149278745 + (CA)n Simple_repeat Simple_repeat 2 34 0 296 296 19 0 chrX 13321191 13321299 -149278631 - L1P LINE L1 -1131 5015 4906 368 290 23 46 chrX 13321659 13321790 -149278140 + MIR3 SINE MIR 37 164 -44 1785 177 3 0 chrX 13321826 13322120 -149277810 + AluJo SINE Alu 1 295 -17 26 30 0 0 chrX 13322808 13322841 -149277089 + AT_rich Low_complexity Low_complexity 1 33 0 302 286 115 24 chrX 13323043 13323330 -149276600 - L1M4 LINE L1 -3724 2422 2110 1092 23 0 0 chrX 13325654 13325809 -149274121 + L1PA4 LINE L1 6024 6178 0 296 272 43 22 chrX 13326104 13326196 -149273734 + MIR3 SINE MIR 97 190 -18 290 290 31 45 chrX 13326814 13327004 -149272926 + L1MC/D LINE L1 5683 5868 -307 186 191 0 0 chrX 13327073 13327115 -149272815 + (TA)n Simple_repeat Simple_repeat 2 43 0 989 190 10 0 chrX 13327224 13327419 -149272511 + MER20 DNA MER1_type 23 219 0 789 257 136 1 chrX 13327423 13327781 -149272149 - L2 LINE L2 -250 3063 2654 371 296 61 0 chrX 13327810 13327925 -149272005 - MIR SINE MIR -26 236 115 855 157 7 7 chrX 13327958 13328098 -149271832 + AluJo SINE Alu 1 140 -172 1762 151 56 0 chrX 13329160 13329445 -149270485 + AluJb SINE Alu 1 301 -11 25 31 0 0 chrX 13330275 13330307 -149269623 + AT_rich Low_complexity Low_complexity 1 32 0 279 270 157 0 chrX 13333591 13333706 -149266224 + MIR SINE MIR 76 208 -54 266 223 86 101 chrX 13333850 13333989 -149265941 - L3 LINE CR1 -197 1380 1244 269 246 63 70 chrX 13334234 13334354 -149265576 - MIR SINE MIR -67 141 31 2008 126 155 11 chrX 13334536 13334910 -149265020 - MSTA LTR MaLR 0 428 1 1841 213 90 62 chrX 13335116 13335684 -149264246 - MLT1E1 LTR MaLR 0 654 71 21 0 0 0 chrX 13336218 13336239 -149263691 + AT_rich Low_complexity Low_complexity 1 21 0 2325 77 10 0 chrX 13337123 13337420 -149262510 + AluSp SINE Alu 1 300 -13 478 311 179 39 chrX 13337761 13338307 -149261623 + L2 LINE L2 1754 2376 -938 356 304 101 49 chrX 13338584 13338890 -149261040 + L2 LINE L2 2550 2871 -443 432 259 102 0 chrX 13339716 13339863 -149260067 + MER103 DNA DNA 3 164 -2 448 214 29 10 chrX 13341374 13341477 -149258453 - MER5A DNA MER1_type -76 113 9 298 253 182 26 chrX 13341452 13341606 -149258324 + MER5A DNA MER1_type 11 188 -1 * 1875 145 17 14 chrX 13341640 13341937 -149257993 - AluJb SINE Alu -9 303 6 222 358 84 0 chrX 13342119 13342214 -149257716 - L2 LINE L2 -15 3257 3155 1780 177 0 10 chrX 13343228 13343528 -149256402 + AluJb SINE Alu 1 297 -15 189 0 0 0 chrX 13343528 13343549 -149256381 + (GA)n Simple_repeat Simple_repeat 2 22 0 2474 93 0 0 chrX 13343607 13343919 -149256011 - AluSq SINE Alu -1 312 1 2197 102 0 16 chrX 13344653 13344957 -149254973 + AluSx SINE Alu 1 299 -13 593 172 16 0 chrX 13345003 13345125 -149254805 - L1MB7 LINE L1 -11 6173 6050 1122 242 5 0 chrX 13346413 13346636 -149253294 - MER58A DNA MER1_type 0 224 1 291 364 25 0 chrX 13346638 13346759 -149253171 + L2 LINE L2 2606 2729 -585 296 333 11 85 chrX 13346776 13346953 -149252977 + MLT1J LTR MaLR 25 188 -323 725 156 109 0 chrX 13346991 13347119 -149252811 + FLAM_C SINE Alu 2 143 0 1717 122 4 0 chrX 13347195 13347433 -149252497 - AluSx SINE Alu -71 241 3 298 308 70 44 chrX 13347433 13347660 -149252270 + L2 LINE L2 2817 3049 -223 220 286 0 60 chrX 13347699 13347783 -149252147 + L2 LINE L2 3235 3313 0 466 246 172 12 chrX 13348103 13348359 -149251571 + MER5C DNA MER1_type 28 324 0 1235 146 9 18 chrX 13348396 13348615 -149251315 + MER20 DNA MER1_type 3 219 0 350 226 0 10 chrX 13348691 13348793 -149251137 + CT-rich Low_complexity Low_complexity 1 101 0 604 212 87 103 chrX 13349521 13349552 -149250378 + MER5A DNA MER1_type 9 39 -150 2341 83 7 3 chrX 13349552 13349852 -149250078 + AluSx SINE Alu 1 301 -11 604 212 87 103 chrX 13349852 13350004 -149249926 + MER5A DNA MER1_type 39 189 0 236 217 0 22 chrX 13350015 13350061 -149249869 + MER5B DNA MER1_type 4 48 -130 1824 166 13 3 chrX 13350076 13350378 -149249552 - AluJo SINE Alu -7 305 1 588 185 115 0 chrX 13350378 13350508 -149249422 + MER5B DNA MER1_type 34 178 0 493 164 62 75 chrX 13350530 13350676 -149249254 - MER20 DNA MER1_type -53 166 23 302 255 186 35 chrX 13350787 13350932 -149248998 + MER5A DNA MER1_type 23 189 0 3155 163 0 2 chrX 13351871 13352400 -149247530 - LTR26B LTR ERV1 -2 529 2 1015 152 65 78 chrX 13352631 13352848 -149247082 + MER20 DNA MER1_type 1 214 -5 1297 186 34 31 chrX 13353384 13353676 -149246254 + MER33 DNA MER1_type 1 297 -2288 1893 146 0 17 chrX 13353676 13353986 -149245944 - AluJb SINE Alu 0 305 1 1297 186 34 31 chrX 13353986 13354015 -149245915 + MER33 DNA MER1_type 297 324 0 259 188 174 14 chrX 13354112 13354181 -149245749 - MER5B DNA MER1_type -3 175 96 1344 212 30 10 chrX 13354184 13354664 -149245266 + L1MC/D LINE L1 4942 5434 -743 529 185 28 19 chrX 13354739 13354847 -149245083 - MER5B DNA MER1_type -68 110 2 636 239 23 28 chrX 13355140 13355316 -149244614 - MER5B DNA MER1_type -3 175 1 733 212 41 6 chrX 13355324 13355494 -149244436 - MER5B DNA MER1_type 0 178 3 21 0 0 0 chrX 13355646 13355667 -149244263 + AT_rich Low_complexity Low_complexity 1 21 0 2195 115 0 0 chrX 13355667 13355954 -149243976 - AluSq SINE Alu -26 287 1 1772 182 16 7 chrX 13355958 13356265 -149243665 - AluJb SINE Alu 0 312 3 367 143 0 0 chrX 13356412 13356468 -149243462 + MER39 LTR ERV1 1 56 -651 697 103 21 0 chrX 13356483 13356580 -149243350 - BC200 scRNA scRNA -79 121 23 862 174 146 0 chrX 13356597 13356810 -149243120 + LTR48 LTR ERV1 39 282 -505 781 170 109 100 chrX 13356837 13357148 -149242782 + LTR48B LTR ERV1 368 644 0 788 241 23 0 chrX 13357155 13357329 -149242601 - MER5B DNA MER1_type 0 178 1 228 122 0 0 chrX 13358392 13358433 -149241497 + (TA)n Simple_repeat Simple_repeat 1 41 0 2258 102 7 0 chrX 13358665 13358959 -149240971 + AluSx SINE Alu 1 296 -16 803 195 107 0 chrX 13358967 13359136 -149240794 - MER5A DNA MER1_type -1 188 2 47 0 0 0 chrX 13359217 13359264 -149240666 + AT_rich Low_complexity Low_complexity 1 47 0 200 324 103 60 chrX 13359644 13359829 -149240101 + L3b LINE CR1 1372 1564 -19 898 221 75 4 chrX 13359848 13360074 -149239856 + LTR37A LTR ERV1 1 242 -184 466 170 20 20 chrX 13360080 13360180 -149239750 - MER21B LTR ERV1 -150 713 614 2359 84 0 10 chrX 13360333 13360641 -149239289 - AluY SINE Alu -6 305 1 797 213 181 53 chrX 13360726 13361195 -149238735 + MER34C LTR ERV1 57 585 0 348 274 83 25 chrX 13361204 13361361 -149238569 - MIR3 SINE MIR -25 183 18 276 359 62 39 chrX 13361491 13361619 -149238311 + L2 LINE L2 3142 3272 0 460 262 48 28 chrX 13361671 13361816 -149238114 - MIR SINE MIR -55 207 60 504 204 338 7 chrX 13361844 13361986 -149237944 - MER5A DNA MER1_type 0 189 1 1230 108 0 0 chrX 13362382 13362549 -149237381 - AluSg/x SINE Alu -9 303 137 919 195 6 0 chrX 13362866 13363040 -149236890 + MER5B DNA MER1_type 1 175 -3 1510 160 27 87 chrX 13363048 13363380 -149236550 + AluJo SINE Alu 1 312 0 378 171 24 61 chrX 13363445 13363527 -149236403 - MER5A DNA MER1_type -77 112 34 187 232 20 131 chrX 13363451 13363550 -149236380 + MER5A DNA MER1_type 96 183 -6 * 1026 188 183 68 chrX 13363977 13364192 -149235738 - MSTC LTR MaLR 0 428 239 1840 178 0 7 chrX 13364192 13364490 -149235440 - AluJb SINE Alu -15 297 2 1026 188 183 68 chrX 13364490 13364657 -149235273 - MSTC LTR MaLR -189 239 2 677 197 211 22 chrX 13364738 13364961 -149234969 + MLT1J1 LTR MaLR 15 279 -167 1985 140 49 20 chrX 13364983 13365332 -149234598 - THE1B LTR MaLR -5 359 1 11960 92 4 0 chrX 13365336 13366906 -149233024 - THE1B-int LTR MaLR -4 1576 1 2286 99 51 23 chrX 13366906 13367258 -149232672 - THE1B LTR MaLR 0 364 3 299 167 49 49 chrX 13367288 13367390 -149232540 + MLT1J1 LTR MaLR 343 444 -2 696 277 80 8 chrX 13367793 13368031 -149231899 - MIR SINE MIR -6 256 2 1852 134 54 13 chrX 13368359 13368657 -149231273 - AluJb SINE Alu -2 310 1 367 178 0 0 chrX 13368942 13369015 -149230915 - MER20 DNA MER1_type 0 219 147 955 149 19 0 chrX 13369015 13369176 -149230754 + MLT1C LTR MaLR 1 164 -303 320 250 9 27 chrX 13369178 13369290 -149230640 - L1ME2 LINE L1 -229 5935 5826 1510 214 67 0 chrX 13369942 13370283 -149229647 - MLT1A1 LTR MaLR -1 364 1 2368 69 30 7 chrX 13370760 13371063 -149228867 - AluSp SINE Alu -3 310 1 40 0 0 0 chrX 13371063 13371103 -149228827 + AT_rich Low_complexity Low_complexity 1 40 0 258 91 0 0 chrX 13371118 13371162 -149228768 - L1MA3 LINE L1 0 6305 6262 1749 186 6 10 chrX 13371180 13371491 -149228439 - AluJo SINE Alu -2 310 1 734 313 117 39 chrX 13371989 13372555 -149227375 + L2 LINE L2 2702 3313 0 301 273 0 61 chrX 13372568 13372667 -149227263 - L1MC4 LINE L1 -1336 6706 6614 2263 107 0 3 chrX 13372813 13373113 -149226817 - AluSp SINE Alu -14 299 1 1797 148 3 64 chrX 13373151 13373481 -149226449 - AluSx SINE Alu -2 310 1 1090 263 157 16 chrX 13373964 13374542 -149225388 - Charlie7 DNA MER1_type -1893 719 60 687 219 46 0 chrX 13374591 13374729 -149225201 - MER58A DNA MER1_type 0 224 80 2332 198 122 72 chrX 13374729 13375502 -149224428 + MER21B LTR ERV1 1 811 -52 254 277 36 12 chrX 13375530 13375613 -149224317 - MER58A DNA MER1_type -21 86 2 387 190 0 0 chrX 13375841 13375920 -149224010 + MER116 DNA Mariner 1 79 -1 473 343 43 39 chrX 13375948 13376181 -149223749 - MIR SINE MIR -14 248 15 749 118 0 74 chrX 13376210 13376345 -149223585 - FLAM_C SINE Alu -18 125 1 458 206 118 15 chrX 13376516 13376652 -149223278 + LTR55 LTR ERV 16 165 -383 9053 76 16 12 chrX 13376747 13377538 -149222392 - L1PA7 LINE L1 -3 6151 5365 2214 110 0 13 chrX 13377538 13377847 -149222083 - AluSg SINE Alu -5 305 1 9053 76 16 12 chrX 13377847 13379092 -149220838 - L1PA7 LINE L1 -789 5365 4106 1042 266 45 12 chrX 13379396 13379727 -149220203 + MER93a LTR ERV1 61 402 0 39060 66 6 3 chrX 13379762 13385886 -149214044 - L1PA5 LINE L1 -5 6149 5 689 235 55 0 chrX 13387926 13388143 -149211787 + L1ME3A LINE L1 5264 5492 -670 929 285 87 36 chrX 13389334 13389866 -149210064 + L1ME3A LINE L1 5476 6034 -136 2615 139 28 7 chrX 13390054 13390477 -149209453 - MSTB1 LTR MaLR 0 432 1 11954 150 17 10 chrX 13392229 13395084 -149204846 + L1MA3 LINE L1 2941 5832 -473 2037 102 25 4 chrX 13395084 13395396 -149204534 + AluSc SINE Alu 1 318 0 11954 150 17 10 chrX 13395396 13395874 -149204056 + L1MA3 LINE L1 5832 6305 0 541 319 88 31 chrX 13395886 13396206 -149203724 - L2 LINE L2 -1272 2042 1705 2041 124 24 0 chrX 13396396 13396686 -149203244 - AluSx SINE Alu -15 297 1 263 356 31 62 chrX 13396861 13396915 -149203015 - MLT1K LTR MaLR -206 382 328 6035 78 37 17 chrX 13396915 13398690 -149201240 + L1PA12 LINE L1 4363 6167 -1 263 356 31 62 chrX 13398690 13398927 -149201003 - MLT1K LTR MaLR -260 328 100 2994 204 51 92 chrX 13399118 13399811 -149200119 - L1MEc LINE L1 -2657 3558 2939 2092 153 103 41 chrX 13399811 13400249 -149199681 + MLT1C LTR MaLR 1 465 -2 2994 204 51 92 chrX 13400249 13400822 -149199108 - L1MEc LINE L1 -3276 2939 2344 1074 156 10 5 chrX 13400901 13401100 -149198830 - L1M2 LINE L1 -666 5646 5447 2036 128 47 37 chrX 13401100 13401474 -149198456 + L1MA9 LINE L1 5926 6311 -1 623 190 71 5 chrX 13401478 13401662 -149198268 - L1MEc LINE L1 -4029 2367 2172 233 323 10 21 chrX 13402088 13402184 -149197746 - L2 LINE L2 -1988 1326 1232 30 0 0 0 chrX 13403426 13403456 -149196474 + AT_rich Low_complexity Low_complexity 1 30 0 773 171 0 0 chrX 13403692 13403809 -149196121 - FLAM_C SINE Alu -25 118 2 192 259 161 70 chrX 13604667 13604810 -148995120 + MIR3 SINE MIR 31 186 -22 274 307 97 23 chrX 13605053 13605229 -148994701 - L2 LINE L2 -219 3053 2865 991 155 31 10 chrX 13605632 13605825 -148994105 + MER3 DNA MER1_type 6 202 -7 427 237 0 12 chrX 13606306 13606475 -148993455 + (TCCA)n Simple_repeat Simple_repeat 2 168 0 2203 102 0 0 chrX 13606576 13606889 -148993041 - AluSx SINE Alu 0 313 1 572 288 17 23 chrX 13607323 13607500 -148992430 - MIR3 SINE MIR -9 199 24 311 279 18 81 chrX 13607943 13608054 -148991876 - MER5A DNA MER1_type -64 125 22 1943 224 45 13 chrX 13608128 13608663 -148991267 + L1ME3 LINE L1 5600 6151 -11 489 245 269 14 chrX 13612938 13613146 -148986784 + MIR SINE MIR 2 262 0 250 304 13 13 chrX 13613262 13613341 -148986589 - L2 LINE L2 -1 3312 3234 2558 66 0 0 chrX 13613943 13614248 -148985682 + AluY SINE Alu 1 305 -6 2521 187 69 22 chrX 13615347 13615882 -148984048 + MLT1F1 LTR MaLR 1 560 -7 2423 179 43 37 chrX 13616553 13617002 -148982928 - L1MD3 LINE L1 -18 7977 7523 2233 166 96 19 chrX 13617002 13617471 -148982459 - MLT1D LTR MaLR 0 505 1 2423 179 43 37 chrX 13617471 13617584 -148982346 - L1MD3 LINE L1 -472 7523 7412 2055 86 48 67 chrX 13617679 13617993 -148981937 - AluSc SINE Alu -1 308 1 222 244 39 51 chrX 13618255 13618333 -148981597 + MIR SINE MIR 70 146 -116 330 244 19 119 chrX 13619008 13619168 -148980762 + MIR SINE MIR 73 216 -46 827 194 15 65 chrX 13619219 13619277 -148980653 + L1MC5 LINE L1 7660 7719 -242 734 181 181 5 chrX 13619277 13619465 -148980465 - MER58A DNA MER1_type 0 224 4 827 194 15 65 chrX 13619465 13619669 -148980261 + L1MC5 LINE L1 7719 7909 -52 583 261 33 7 chrX 13620156 13620309 -148979621 - MIR SINE MIR -35 227 71 1007 250 59 0 chrX 13621745 13621981 -148977949 - MIR SINE MIR -6 256 7 211 217 43 0 chrX 13622057 13622103 -148977827 - MIR SINE MIR -117 145 98 1104 258 130 18 chrX 13622276 13622721 -148977209 + MLT1H LTR MaLR 13 507 -42 550 308 95 29 chrX 13622867 13623276 -148976654 + LTR16B LTR ERVL 10 445 -5 2248 144 0 8 chrX 13623410 13623778 -148976152 + MER47A DNA MER2_type 1 365 -1 2342 113 3 0 chrX 13623873 13624216 -148975714 + AluSx SINE Alu 3 346 0 385 316 58 26 chrX 13624246 13624436 -148975494 + L2 LINE L2 2874 3069 -203 610 260 109 10 chrX 13624502 13624694 -148975236 - MIR SINE MIR -11 251 41 208 204 19 19 chrX 13624895 13624949 -148974981 + CT-rich Low_complexity Low_complexity 5 58 0 253 250 8 148 chrX 13625221 13625349 -148974581 + MIR SINE MIR 82 191 -71 210 77 39 39 chrX 13625528 13625580 -148974350 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2888 115 0 36 chrX 13625593 13625792 -148974138 + MSTA LTR MaLR 3 208 -220 2296 84 3 14 chrX 13625792 13626116 -148973814 + AluSp SINE Alu 1 321 0 2888 115 0 36 chrX 13626116 13626355 -148973575 + MSTA LTR MaLR 208 428 0 277 221 19 0 chrX 13626674 13626778 -148973152 + (TCCA)n Simple_repeat Simple_repeat 4 109 0 1370 214 75 17 chrX 13627048 13627393 -148972537 - MLT1A1 LTR MaLR 0 365 1 1833 144 114 59 chrX 13627393 13627533 -148972397 - MLT1A1-int LTR MaLR 0 1735 1604 1919 137 22 0 chrX 13627533 13627848 -148972082 + AluSx SINE Alu 1 321 0 1833 144 114 59 chrX 13627848 13628110 -148971820 - MLT1A1-int LTR MaLR -131 1604 1310 2063 144 0 35 chrX 13628336 13628568 -148971362 - MLT1A1-int LTR MaLR -1374 361 145 2703 91 6 3 chrX 13628568 13628931 -148970999 + THE1B LTR MaLR 1 364 0 2063 144 0 35 chrX 13628931 13629067 -148970863 - MLT1A1-int LTR MaLR -1590 145 6 1735 262 16 13 chrX 13629098 13629545 -148970385 - LTR16C LTR ERVL -6 485 38 22 56 0 0 chrX 13629681 13629717 -148970213 + AT_rich Low_complexity Low_complexity 1 36 0 2259 113 0 22 chrX 13630630 13630948 -148968982 + AluSq SINE Alu 1 311 -2 213 322 56 33 chrX 13631534 13631624 -148968306 + MIR3 SINE MIR 10 101 -107 417 304 37 48 chrX 13631702 13632054 -148967876 + MLT1H LTR MaLR 95 549 0 278 306 35 0 chrX 13632059 13632144 -148967786 + MIR3 SINE MIR 106 193 -15 225 0 0 0 chrX 13632927 13632952 -148966978 + (TG)n Simple_repeat Simple_repeat 1 25 0 1446 190 84 45 chrX 13633014 13633393 -148966537 + MLT1D LTR MaLR 6 399 -106 317 158 0 0 chrX 13633395 13633452 -148966478 - MLT1D LTR MaLR -385 120 64 297 141 13 26 chrX 13633453 13633531 -148966399 + CT-rich Low_complexity Low_complexity 2 78 0 2313 109 0 0 chrX 13633702 13634005 -148965925 - AluSx SINE Alu -9 303 1 912 156 0 0 chrX 13634735 13634995 -148964935 + (TG)n Simple_repeat Simple_repeat 1 260 0 896 166 10 60 chrX 13635194 13635393 -148964537 - MER20 DNA MER1_type 0 219 31 738 194 13 26 chrX 13635501 13635656 -148964274 + MLT1F LTR MaLR 3 155 -387 1002 191 103 72 chrX 13635664 13636082 -148963848 - LTR8A LTR ERV1 -8 719 289 2338 152 23 37 chrX 13636196 13636451 -148963479 - MSTA LTR MaLR 0 428 179 2162 109 0 0 chrX 13636451 13636760 -148963170 + AluSq SINE Alu 1 309 0 2338 152 23 37 chrX 13636760 13636937 -148962993 - MSTA LTR MaLR -249 179 1 406 200 71 43 chrX 13636992 13637132 -148962798 - LTR8 LTR ERV1 -547 144 1 1158 188 169 28 chrX 13637141 13637461 -148962469 + MLT1F LTR MaLR 176 540 -2 1283 240 10 23 chrX 13638065 13638486 -148961444 + L1ME1 LINE L1 5759 6332 -2 2889 166 230 3 chrX 13638747 13639381 -148960549 + L1M1 LINE L1 623 1400 -6165 * 6897 113 21 9 chrX 13639379 13639674 -148960256 + L1MA2 LINE L1 4387 4677 -1627 2117 138 7 0 chrX 13639674 13639979 -148959951 + AluY SINE Alu 1 307 -4 6897 113 21 9 chrX 13639979 13641568 -148958362 + L1MA2 LINE L1 4677 6292 -12 1299 110 35 0 chrX 13641586 13641814 -148958116 - L1 LINE L1 -1767 4379 4144 539 229 39 117 chrX 13642404 13642784 -148957146 - MLT1H LTR MaLR 0 549 95 355 329 79 22 chrX 13643106 13643455 -148956475 - MLT1J LTR MaLR -4 507 223 397 293 20 20 chrX 13643846 13643996 -148955934 + MIR SINE MIR 84 233 -29 205 232 179 0 chrX 13645275 13645331 -148954599 - MIR3 SINE MIR -10 198 133 201 100 25 25 chrX 13645334 13645374 -148954556 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 418 204 161 0 chrX 13645793 13645886 -148954044 + MER5A DNA MER1_type 1 108 -81 3490 140 87 55 chrX 13646142 13646904 -148953026 + LTR48 LTR ERV1 1 786 -1 1523 96 0 10 chrX 13646992 13647189 -148952741 + AluSx SINE Alu 1 195 -117 254 367 55 0 chrX 13647815 13647924 -148952006 - L2 LINE L2 -5 3267 3153 883 217 119 24 chrX 13647950 13648286 -148951644 - Charlie2 DNA MER1_type -38 2824 2457 619 264 109 20 chrX 13648357 13648558 -148951372 + MIR SINE MIR 42 260 -2 3790 152 9 16 chrX 13648676 13649322 -148950608 - LTR48B LTR ERV1 0 644 3 5486 120 19 4 chrX 13649669 13650649 -148949281 - L1PA16 LINE L1 -6 6160 5143 2761 178 51 29 chrX 13650753 13651166 -148948764 + L1ME2 LINE L1 5488 5923 -241 2180 133 24 3 chrX 13651166 13651504 -148948426 + MER7A DNA MER2_type 4 346 0 2761 178 51 29 chrX 13651504 13651752 -148948178 + L1ME2 LINE L1 5923 6164 0 239 405 24 24 chrX 13651778 13651946 -148947984 - L3 LINE CR1 -13 1564 1397 214 325 25 100 chrX 13651950 13652070 -148947860 - L3 LINE CR1 -614 963 853 627 270 168 13 chrX 13652868 13653094 -148946836 - MIR SINE MIR 0 262 2 234 91 0 0 chrX 13653443 13653476 -148946454 + (T)n Simple_repeat Simple_repeat 1 33 0 204 267 27 40 chrX 13653582 13653657 -148946273 + L2 LINE L2 262 335 -2979 940 221 21 45 chrX 13653764 13654134 -148945796 - LTR37B LTR ERV1 0 468 91 1987 155 0 3 chrX 13654140 13654450 -148945480 + AluJo SINE Alu 1 309 -3 940 221 21 45 chrX 13654175 13654590 -148945340 - LTR37B LTR ERV1 -377 91 7 218 156 0 0 chrX 13655290 13655322 -148944608 - MIR SINE MIR -10 252 221 865 278 14 9 chrX 13655623 13655846 -148944084 - MIR SINE MIR -5 257 34 1107 239 29 4 chrX 13656124 13656367 -148943563 + MIR SINE MIR 1 249 -13 294 29 0 0 chrX 13658536 13658571 -148941359 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 71 0 0 chrX 13658692 13658734 -148941196 + AT_rich Low_complexity Low_complexity 1 42 0 209 159 23 0 chrX 13658995 13659039 -148940891 + (TA)n Simple_repeat Simple_repeat 1 45 0 969 247 111 56 chrX 13659447 13659964 -148939966 + MLT1H1 LTR MaLR 7 540 -2 254 302 167 0 chrX 13660441 13660567 -148939363 - L2 LINE L2 -9 3304 3158 335 244 0 0 chrX 13660647 13660725 -148939205 + MER116 DNA Mariner 1 78 -2 870 195 12 32 chrX 13660965 13661211 -148938719 + L1MC5 LINE L1 7696 7936 -25 546 94 51 8 chrX 13661231 13661348 -148938582 + GA-rich Low_complexity Low_complexity 2 123 0 1569 197 121 26 chrX 13661390 13661812 -148938118 - MLT1C LTR MaLR -2 465 4 466 48 0 0 chrX 13661955 13662017 -148937913 - MADE1 DNA Mariner -1 79 18 9389 157 30 18 chrX 13662022 13665828 -148934102 + L1MA2 LINE L1 2424 6304 0 1611 139 0 8 chrX 13665848 13666092 -148933838 + L1PB4 LINE L1 5902 6143 -13 1004 158 103 5 chrX 13666097 13666300 -148933630 + MLT1B LTR MaLR 122 344 -46 1817 94 0 0 chrX 13667237 13667481 -148932449 - L1PA6 LINE L1 -2 6152 5909 322 257 28 18 chrX 13667715 13667824 -148932106 + (CATA)n Simple_repeat Simple_repeat 3 112 0 1433 210 97 44 chrX 13667932 13668366 -148931564 + MSTB2 LTR MaLR 1 457 0 2585 58 0 0 chrX 13668617 13668928 -148931002 + AluY SINE Alu 1 311 0 2502 72 0 10 chrX 13668933 13669238 -148930692 + AluSp SINE Alu 1 302 -11 216 0 0 0 chrX 13669729 13669753 -148930177 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 968 216 67 84 chrX 13669803 13669865 -148930065 - MER39 LTR ERV1 -2 687 625 194 0 39 0 chrX 13669865 13669891 -148930039 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 968 216 67 84 chrX 13669891 13670372 -148929558 - MER39 LTR ERV1 -64 625 5 428 325 67 57 chrX 13670546 13670934 -148928996 + L1M4 LINE L1 4733 5124 -1022 560 280 0 15 chrX 13670934 13671066 -148928864 + MER5B DNA MER1_type 1 130 -48 272 211 39 0 chrX 13671109 13671161 -148928769 + MER5A DNA MER1_type 136 189 0 265 282 0 12 chrX 13671360 13671445 -148928485 - LTR33 LTR ERVL 0 521 438 973 195 26 16 chrX 13671445 13671746 -148928184 + L1MD3 LINE L1 6059 7990 -5 430 285 77 14 chrX 13671748 13671955 -148927975 - LTR33 LTR ERVL -62 459 240 1558 234 6 70 chrX 13672106 13672581 -148927349 - MLT2B1 LTR ERVL -75 445 1 261 246 33 0 chrX 13673262 13673323 -148926607 - L2 LINE L2 -1 3271 3209 228 244 0 0 chrX 13673322 13673367 -148926563 - L2 LINE L2 -330 2983 2939 * 2085 208 59 81 chrX 13673560 13674166 -148925764 + MLT1E LTR MaLR 1 593 0 1085 256 79 43 chrX 13674753 13674910 -148925020 + LTR16A1 LTR ERVL 1 151 -306 321 82 0 0 chrX 13674910 13674959 -148924971 + (CA)n Simple_repeat Simple_repeat 2 50 0 1085 256 79 43 chrX 13674959 13675242 -148924688 + LTR16A1 LTR ERVL 151 457 0 2388 141 18 75 chrX 13675283 13675425 -148924505 - L1MB8 LINE L1 -2 6176 6027 1693 181 7 11 chrX 13675425 13675712 -148924218 + AluJo SINE Alu 1 286 -26 2388 141 18 75 chrX 13675712 13676072 -148923858 - L1MB8 LINE L1 -151 6027 5703 1850 242 10 30 chrX 13676076 13676572 -148923358 - LTR31 LTR ERV1 -9 610 125 1509 154 14 11 chrX 13676705 13676984 -148922946 - L1MB8 LINE L1 -471 5707 5428 899 143 0 0 chrX 13676992 13677125 -148922805 - FLAM_C SINE Alu -10 133 1 909 121 52 31 chrX 13677125 13677382 -148922548 - L1MB8 LINE L1 -738 5440 5180 370 195 39 0 chrX 13677382 13677459 -148922471 + L1ME3A LINE L1 6035 6114 -56 622 349 75 20 chrX 13677900 13678258 -148921672 - L2 LINE L2 0 3313 2936 280 232 43 0 chrX 13678330 13678399 -148921531 + MER3 DNA MER1_type 39 110 -99 * 703 180 7 7 chrX 13678397 13678547 -148921383 + MER3 DNA MER1_type 1985 2134 0 1294 208 28 91 chrX 13678555 13678886 -148921044 + MER39 LTR ERV1 5 455 -252 580 265 121 48 chrX 13678886 13679301 -148920629 + MER65A LTR ERV1 1 445 0 1294 208 28 91 chrX 13679301 13679510 -148920420 + MER39 LTR ERV1 455 676 -31 954 125 5 16 chrX 13679536 13679720 -148920210 + MER3 DNA MER1_type 2156 2337 0 1383 171 3 17 chrX 13680168 13680466 -148919464 + MER3 DNA MER1_type 2330 2623 0 257 252 74 89 chrX 13680573 13680708 -148919222 - L2 LINE L2 -576 2738 2606 24 0 0 0 chrX 13681372 13681396 -148918534 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chrX 13682066 13682091 -148917839 + AT_rich Low_complexity Low_complexity 1 25 0 2373 96 6 3 chrX 13682479 13682791 -148917139 - AluSq SINE Alu 0 313 1 28 0 0 0 chrX 13682854 13682882 -148917048 + AT_rich Low_complexity Low_complexity 1 28 0 2208 167 80 122 chrX 13683309 13683945 -148915985 + LTR8A LTR ERV1 34 638 -89 2247 107 0 7 chrX 13683945 13684243 -148915687 - AluY SINE Alu -15 296 1 2208 167 80 122 chrX 13684243 13684330 -148915600 + LTR8A LTR ERV1 638 727 0 2707 75 123 0 chrX 13684707 13685106 -148914824 + LTR7 LTR ERV1 1 448 -2 19674 88 10 15 chrX 13685108 13688117 -148911813 + HERVH LTR ERV1 1 2995 -4718 622 159 32 0 chrX 13688117 13688243 -148911687 + HERVH LTR ERV1 3161 3290 -4423 * 3182 109 4 6 chrX 13688233 13688736 -148911194 + HERVH LTR ERV1 3492 3993 -3720 4193 136 0 1 chrX 13688738 13689401 -148910529 + HERVH LTR ERV1 4488 5149 -2564 1301 139 19 0 chrX 13689402 13689618 -148910312 + HERVH LTR ERV1 5600 5819 -1894 2141 97 52 29 chrX 13689618 13689999 -148909931 + HERVH LTR ERV1 7324 7713 0 2525 72 102 5 chrX 13689999 13690402 -148909528 + LTR7 LTR ERV1 1 442 -8 610 183 29 120 chrX 13690410 13690497 -148909433 + LTR8A LTR ERV1 569 634 -93 2403 87 0 7 chrX 13690497 13690807 -148909123 - AluY SINE Alu -3 308 1 610 183 29 120 chrX 13690807 13690894 -148909036 + LTR8A LTR ERV1 634 727 0 381 250 0 27 chrX 13691513 13691625 -148908305 - MLT1K LTR MaLR -1 587 479 3502 123 10 26 chrX 13691701 13692280 -148907650 - MER34C LTR ERV1 -11 574 5 245 299 39 98 chrX 13692421 13692675 -148907255 - MLT1K LTR MaLR -158 430 192 244 204 41 0 chrX 13692854 13692903 -148907027 + Charlie2 DNA MER1_type 532 582 -2200 271 357 107 29 chrX 13693992 13694236 -148905694 - L2 LINE L2 -3 3269 3007 591 330 94 20 chrX 13694312 13694609 -148905321 + LTR16C LTR ERVL 81 399 -92 381 185 12 0 chrX 13694686 13694767 -148905163 + MLT1H LTR MaLR 468 549 0 879 315 178 30 chrX 13694778 13694818 -148905112 - L2 LINE L2 -1241 2073 2040 984 213 5 0 chrX 13694818 13695006 -148904924 - MER5A DNA MER1_type 0 189 1 879 315 178 30 chrX 13695006 13695632 -148904298 - L2 LINE L2 -1274 2040 1308 956 192 66 75 chrX 13695933 13696251 -148903679 - MER39 LTR ERV1 -2 705 391 232 218 238 40 chrX 13696338 13696439 -148903491 - MER34 LTR ERV1 -421 121 1 385 325 36 31 chrX 13697264 13697458 -148902472 + L2 LINE L2 3117 3311 -2 2126 188 5 20 chrX 13697614 13698012 -148901918 - MSTD LTR MaLR 0 396 5 784 279 68 62 chrX 13698357 13698812 -148901118 - MLT1J LTR MaLR -51 460 3 1909 146 14 17 chrX 13700234 13700529 -148899401 + AluJb SINE Alu 3 296 -16 2607 156 59 2 chrX 13701287 13701729 -148898201 - LTR24 LTR ERV1 0 467 1 2356 119 0 0 chrX 13701816 13702128 -148897802 + AluSx SINE Alu 1 312 0 239 143 41 0 chrX 13702841 13702890 -148897040 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 244 0 0 0 chrX 13703107 13703134 -148896796 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2010 87 68 0 chrX 13703134 13703399 -148896531 - AluSp SINE Alu -30 283 1 898 93 0 0 chrX 13703656 13703785 -148896145 - L1PA7 LINE L1 0 6154 6026 23 54 0 0 chrX 13703896 13703933 -148895997 + AT_rich Low_complexity Low_complexity 1 37 0 806 311 43 34 chrX 13704044 13704485 -148895445 + L2 LINE L2 2447 2891 -423 190 255 5 181 chrX 13704464 13704668 -148895262 + L2 LINE L2 2997 3164 -149 * 657 135 0 0 chrX 13704794 13704890 -148895040 - FRAM SINE Alu -11 165 70 454 311 0 0 chrX 13704890 13705009 -148894921 + L2 LINE L2 3195 3313 0 1775 153 78 9 chrX 13705158 13705479 -148894451 - MER61A LTR ERV1 0 343 1 222 287 124 8 chrX 13705708 13705837 -148894093 - L2 LINE L2 -827 2487 2344 208 284 40 14 chrX 13705967 13706041 -148893889 + L2 LINE L2 3193 3268 -4 2771 149 9 13 chrX 13706060 13706511 -148893419 - LOR1b LTR ERV1 0 461 13 980 136 7 0 chrX 13706517 13706657 -148893273 + MER2 DNA MER2_type 2 142 -203 376 115 0 0 chrX 13706708 13706769 -148893161 + MER2 DNA MER2_type 135 195 -150 1746 223 132 43 chrX 13706791 13707437 -148892493 - MER50 LTR ERV1 -19 715 13 180 78 0 59 chrX 13707455 13707506 -148892424 + (TTTTTA)n Simple_repeat Simple_repeat 1 48 0 253 239 0 0 chrX 13707514 13707560 -148892370 + MER2 DNA MER2_type 298 343 -2 933 198 0 24 chrX 13707845 13707966 -148891964 - MER58A DNA MER1_type -174 167 50 2379 84 3 0 chrX 13707966 13708263 -148891667 + AluSx SINE Alu 1 298 -14 933 198 0 24 chrX 13708263 13708308 -148891622 - MER58A DNA MER1_type -291 50 5 183 129 0 0 chrX 13708328 13708359 -148891571 + (CATATA)n Simple_repeat Simple_repeat 4 34 0 182 259 198 35 chrX 13708471 13708587 -148891343 + L2 LINE L2 2447 2581 -733 324 252 37 59 chrX 13709697 13709832 -148890098 + L1ME4a LINE L1 5521 5652 -2156 1831 151 4 4 chrX 13709834 13710113 -148889817 + AluJo SINE Alu 1 279 -33 207 0 0 0 chrX 13710129 13710152 -148889778 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 287 196 0 0 chrX 13710157 13710208 -148889722 + MER20 DNA MER1_type 169 219 0 650 274 231 63 chrX 13711089 13711177 -148888753 + L3 LINE CR1 586 658 -919 2320 183 157 9 chrX 13711177 13711744 -148888186 - MLT1E1 LTR MaLR -3 651 1 650 274 231 63 chrX 13711744 13712385 -148887545 + L3 LINE CR1 658 1438 -139 * 828 306 156 41 chrX 13712382 13713613 -148886317 + L2 LINE L2 1527 2899 -415 455 269 62 35 chrX 13713713 13713858 -148886072 + MLT1J2 LTR MaLR 289 437 -13 279 262 78 0 chrX 13713865 13713968 -148885962 + MLT1J LTR MaLR 399 509 -2 737 264 35 15 chrX 13714157 13714358 -148885572 - MIR SINE MIR -12 250 46 216 247 156 0 chrX 13714480 13714557 -148885373 - MER5C DNA MER1_type 0 324 236 374 246 59 8 chrX 13714586 13714704 -148885226 - MER5C DNA MER1_type -200 124 1 2024 123 102 15 chrX 13714799 13715133 -148884797 - THE1B LTR MaLR 0 364 2 2056 173 65 18 chrX 13715435 13715834 -148884096 + MER47B DNA MER2_type 1 418 0 3871 177 84 4 chrX 13715958 13716830 -148883100 + L1MB5 LINE L1 5228 6312 0 2428 216 42 82 chrX 13717399 13718254 -148881676 - L1MC4 LINE L1 -1 8041 7193 329 263 38 75 chrX 13718475 13718741 -148881189 + L1ME4a LINE L1 5761 6016 -105 222 138 17 52 chrX 13719022 13719080 -148880850 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 2498 123 70 5 chrX 13719327 13719725 -148880205 + MSTA LTR MaLR 1 424 -4 608 66 55 0 chrX 13719729 13719820 -148880110 + MSTA-int LTR MaLR 1 96 -1555 323 113 19 0 chrX 13719817 13719870 -148880060 + MSTB-int LTR MaLR 1598 1651 0 * 2392 166 21 9 chrX 13719870 13720291 -148879639 + MSTB LTR MaLR 1 426 0 621 169 71 71 chrX 13720364 13720469 -148879461 - L1MC5 LINE L1 -58 7903 7796 2600 216 10 10 chrX 13720469 13720988 -148878942 + LTR40a LTR ERVL 1 519 0 621 169 71 71 chrX 13720988 13721066 -148878864 - L1MC5 LINE L1 -164 7797 7720 1194 214 65 25 chrX 13721179 13721502 -148878428 - MER46C DNA MER2_type -1 337 2 244 286 0 0 chrX 13722156 13722212 -148877718 - L2 LINE L2 -18 3254 3199 204 40 0 0 chrX 13722261 13722286 -148877644 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 285 371 50 7 chrX 13722294 13722434 -148877496 - L2 LINE L2 -12 3260 3115 194 336 69 30 chrX 13722984 13723115 -148876815 - L3 LINE CR1 -1325 252 117 4297 30 57 0 chrX 13723826 13724354 -148875576 + LTR6B LTR ERV1 1 558 0 185 329 47 35 chrX 13724865 13724950 -148874980 + L2 LINE L2 3187 3272 0 885 189 0 0 chrX 13724956 13725099 -148874831 + FRAM SINE Alu 1 140 -36 216 97 0 0 chrX 13725106 13725137 -148874793 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1832 231 98 43 chrX 13725280 13725842 -148874088 + MLT1E LTR MaLR 1 593 0 337 213 0 0 chrX 13725967 13726028 -148873902 - MER2 DNA MER2_type 0 345 285 502 208 0 10 chrX 13726049 13726145 -148873785 - MER8 DNA MER2_type -143 96 2 227 200 123 15 chrX 13726256 13726321 -148873609 - L2 LINE L2 -62 3251 3180 357 24 0 0 chrX 13727538 13727580 -148872350 + (CA)n Simple_repeat Simple_repeat 1 42 0 325 208 115 97 chrX 13727746 13727772 -148872158 + MLT1G LTR MaLR 219 243 -347 2303 134 86 8 chrX 13727772 13728167 -148871763 + MSTB LTR MaLR 1 426 0 325 208 115 97 chrX 13728167 13728366 -148871564 + MLT1G LTR MaLR 243 448 -142 1481 72 10 0 chrX 13728377 13728572 -148871358 + L1PA10 LINE L1 5967 6163 -5 2174 131 0 6 chrX 13729228 13729542 -148870388 + AluSq SINE Alu 1 312 -1 309 51 0 0 chrX 13729654 13729693 -148870237 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chrX 13730071 13730095 -148869835 + AT_rich Low_complexity Low_complexity 1 24 0 600 269 88 13 chrX 13730142 13730369 -148869561 + MIR SINE MIR 2 245 -17 38 75 0 0 chrX 13730419 13730499 -148869431 + AT_rich Low_complexity Low_complexity 1 80 0 232 265 68 102 chrX 13730510 13730657 -148869273 + MIR3 SINE MIR 37 178 -30 901 201 90 0 chrX 13730754 13730943 -148868987 + MER63A DNA MER1_type 5 210 0 2270 127 13 32 chrX 13731728 13732106 -148867824 - THE1C LTR MaLR -4 371 1 1017 261 139 24 chrX 13732463 13732873 -148867057 + LTR16A1 LTR ERVL 1 457 0 3541 242 55 27 chrX 13732913 13734257 -148865673 + L1ME2 LINE L1 369 1674 -4541 2373 92 3 0 chrX 13734257 13734562 -148865368 + AluSp SINE Alu 1 306 -7 3541 242 55 27 chrX 13734562 13734942 -148864988 + L1ME2 LINE L1 1674 2042 -4173 1993 217 127 22 chrX 13734942 13735476 -148864454 + MLT1E LTR MaLR 1 590 -3 3541 242 55 27 chrX 13735476 13736064 -148863866 + L1ME2 LINE L1 2042 2812 -3403 2725 135 19 12 chrX 13736365 13736788 -148863142 + MSTB LTR MaLR 1 426 0 682 283 31 16 chrX 13737682 13737873 -148862057 - LTR16C LTR ERVL -59 432 239 380 307 58 0 chrX 13737905 13738042 -148861888 - LTR16C LTR ERVL -342 149 5 563 290 88 13 chrX 13738437 13738675 -148861255 + L1MC1 LINE L1 5667 5922 -1886 1214 250 112 61 chrX 13739293 13739425 -148860505 + Charlie2 DNA MER1_type 7 131 -2651 1722 189 21 50 chrX 13739425 13739801 -148860129 - MLT1A1 LTR MaLR 0 365 1 1214 250 112 61 chrX 13739801 13740224 -148859706 + Charlie2 DNA MER1_type 131 590 -2192 1539 284 66 19 chrX 13740439 13741236 -148858694 - L2 LINE L2 -1 3312 2478 3599 218 44 50 chrX 13741236 13742658 -148857272 + L1ME2 LINE L1 3525 5110 -1123 2174 146 2 88 chrX 13742658 13743091 -148856839 - MSTD LTR MaLR 0 396 1 3599 218 44 50 chrX 13743091 13744198 -148855732 + L1ME2 LINE L1 5110 6223 -10 776 144 0 38 chrX 13744312 13744444 -148855486 + FLAM_C SINE Alu 1 127 -16 253 164 0 73 chrX 13744732 13744787 -148855143 - L2 LINE L2 0 3313 3263 252 0 0 0 chrX 13746218 13746246 -148853684 + (GA)n Simple_repeat Simple_repeat 1 28 0 2597 174 68 8 chrX 13748769 13749280 -148850650 + MLT1F LTR MaLR 1 542 0 23 0 0 0 chrX 13749445 13749468 -148850462 + AT_rich Low_complexity Low_complexity 1 23 0 1404 160 66 44 chrX 13749839 13750158 -148849772 + L1MC1 LINE L1 6002 6327 -6 502 215 30 58 chrX 13750235 13750481 -148849449 - L1MEc LINE L1 -3862 2353 2171 323 267 204 40 chrX 13751031 13751207 -148848723 - L1MEc LINE L1 -4936 1269 1065 811 175 0 31 chrX 13751207 13751367 -148848563 + FAM SINE Alu 1 43 -6 1774 175 3 3 chrX 13751940 13752237 -148847693 + AluJb SINE Alu 5 301 -11 1500 152 38 9 chrX 13752253 13752568 -148847362 - MER33 DNA MER1_type 0 324 1 1671 168 65 9 chrX 13752748 13753069 -148846861 - MER58B DNA MER1_type 0 341 3 3292 119 26 48 chrX 13753123 13753701 -148846229 + MER34B LTR ERV1 1 565 0 22 0 0 0 chrX 13754151 13754173 -148845757 + AT_rich Low_complexity Low_complexity 1 22 0 556 270 28 48 chrX 13754758 13755010 -148844920 + MLT1J LTR MaLR 231 477 -34 883 178 32 16 chrX 13755104 13755289 -148844641 - MER5A DNA MER1_type -1 188 1 243 203 0 0 chrX 13755334 13755393 -148844537 + (CATAG)n Simple_repeat Simple_repeat 1 59 0 2847 122 19 6 chrX 13755403 13755870 -148844060 - Tigger3(Golem) DNA MER2_type 0 3029 2557 4702 102 4 59 chrX 13755877 13756677 -148843253 - L1PB3 LINE L1 -7 6147 5392 1225 98 84 35 chrX 13756677 13756962 -148842968 - Tigger3(Golem) DNA MER2_type -453 2576 2278 632 168 9 0 chrX 13756953 13757060 -148842870 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 314 282 29 35 chrX 13758782 13758956 -148840974 - MER104 DNA Tc2 -3 177 5 1316 20 0 0 chrX 13759010 13759198 -148840732 + L1PA8 LINE L1 6020 6207 0 296 260 13 40 chrX 13759198 13759348 -148840582 + L1ME4a LINE L1 5964 6109 -12 268 320 50 99 chrX 13761046 13761227 -148838703 - L2 LINE L2 -308 2964 2795 469 329 36 29 chrX 13761281 13761448 -148838482 - L2 LINE L2 -467 2847 2676 1411 129 9 0 chrX 13761448 13761665 -148838265 - MER20 DNA MER1_type 0 219 1 469 329 36 29 chrX 13761665 13761771 -148838159 - L2 LINE L2 -638 2676 2572 484 141 207 8 chrX 13761796 13761917 -148838013 - MIR SINE MIR -79 183 39 356 266 74 79 chrX 13761926 13762129 -148837801 - L2 LINE L2 -774 2540 2339 2871 132 65 8 chrX 13762129 13762636 -148837294 + MER34B LTR ERV1 1 536 -29 280 165 8 83 chrX 13762716 13762825 -148837105 + MER34B-int LTR ERV1 1022 1716 -4824 265 187 40 13 chrX 13762893 13762968 -148836962 + MER34B-int LTR ERV1 1305 1381 -4950 977 192 166 79 chrX 13763138 13763346 -148836584 + MER34B-int LTR ERV1 287 294 -4642 1923 99 96 0 chrX 13763346 13763628 -148836302 - AluSg SINE Alu 0 310 2 977 192 166 79 chrX 13763628 13763860 -148836070 + MER34B-int LTR ERV1 294 505 -4431 10893 202 71 69 chrX 13764169 13765039 -148834891 + MER34B-int LTR ERV1 883 1750 -3186 287 0 93 19 chrX 13765045 13765099 -148834831 + (TTATA)n Simple_repeat Simple_repeat 4 61 0 2300 113 0 7 chrX 13765099 13765394 -148834536 - AluSx SINE Alu -17 295 1 10893 202 71 69 chrX 13765394 13766002 -148833928 + MER34B-int LTR ERV1 1750 2356 -2580 2452 53 0 3 chrX 13766002 13766303 -148833627 + AluY SINE Alu 1 300 -11 10893 202 71 69 chrX 13766303 13767410 -148832520 + MER34B-int LTR ERV1 2356 3460 -1476 2271 85 0 0 chrX 13767410 13767691 -148832239 - AluSg SINE Alu -11 299 19 10893 202 71 69 chrX 13767691 13768482 -148831448 + MER34B-int LTR ERV1 3460 4270 -666 1088 157 0 0 chrX 13768482 13768648 -148831282 - FRAM SINE Alu 0 166 1 10893 202 71 69 chrX 13768648 13769150 -148830780 + MER34B-int LTR ERV1 4270 4770 -166 2337 105 0 3 chrX 13769291 13769605 -148830325 - AluSq SINE Alu 0 313 1 3236 108 96 8 chrX 13769757 13770276 -148829654 + MER34B LTR ERV1 1 565 0 405 247 173 19 chrX 13770276 13770438 -148829492 - L2 LINE L2 -972 2342 2156 411 286 223 5 chrX 13770691 13770897 -148829033 + MIR SINE MIR 12 262 0 402 33 295 0 chrX 13771061 13771122 -148828808 - MADE1 DNA Mariner 0 80 2 429 299 24 8 chrX 13771557 13771684 -148828246 - MER5B DNA MER1_type -8 170 42 2254 199 88 35 chrX 13771691 13772350 -148827580 + L1ME3 LINE L1 5447 6140 -22 192 188 0 0 chrX 13772401 13772433 -148827497 + MER5B DNA MER1_type 131 162 -16 263 260 290 10 chrX 13772776 13772876 -148827054 - MIR3 SINE MIR -8 200 73 263 294 87 0 chrX 13773222 13773314 -148826616 + MIR SINE MIR 51 150 -58 431 299 176 31 chrX 13774251 13774569 -148825361 - L1MC4a LINE L1 -1458 6350 5987 4802 211 28 12 chrX 13774584 13775721 -148824209 - L1MC4a LINE L1 -2 7806 6652 2914 205 23 82 chrX 13775753 13775918 -148824012 + L1ME1 LINE L1 5164 5337 -829 2131 66 27 17 chrX 13775918 13776219 -148823711 + L1PA10 LINE L1 5861 6164 -4 2914 205 23 82 chrX 13776219 13776717 -148823213 + L1ME1 LINE L1 5337 5737 -429 5333 44 38 0 chrX 13776717 13777379 -148822551 + L1PA10 LINE L1 5471 6157 -11 2914 205 23 82 chrX 13777379 13777784 -148822146 + L1ME1 LINE L1 5737 6164 -2 1425 211 10 6 chrX 13778456 13778769 -148821161 + MER58B DNA MER1_type 28 341 0 294 277 157 19 chrX 13779326 13779485 -148820445 + MIR SINE MIR 28 208 -54 251 333 0 39 chrX 13780433 13780511 -148819419 - L2 LINE L2 -5 3308 3234 * 317 237 26 13 chrX 13780502 13780578 -148819352 + MIR SINE MIR 25 101 -107 970 73 0 0 chrX 13780769 13780892 -148819038 + AluY SINE Alu 172 294 -17 1586 171 11 21 chrX 13781113 13781393 -148818537 + AluJo SINE Alu 6 282 -30 242 203 0 29 chrX 13781400 13781469 -148818461 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 579 269 150 9 chrX 13781496 13781935 -148817995 + MER90 LTR ERV1 3 575 0 2256 78 14 0 chrX 13782189 13782483 -148817447 + AluSx SINE Alu 1 298 -14 235 165 165 113 chrX 13782628 13782761 -148817169 + MIR SINE MIR 52 191 -71 1853 191 55 117 chrX 13782945 13783559 -148816371 - MLT1G1 LTR MaLR -12 583 8 499 167 11 11 chrX 13783745 13783835 -148816095 + AluJo SINE Alu 47 136 -176 265 206 29 39 chrX 13784300 13784402 -148815528 + L1MC5 LINE L1 7817 7917 -44 756 149 0 0 chrX 13786456 13786570 -148813360 - FLAM_C SINE Alu -29 114 1 2509 151 50 52 chrX 13786604 13787108 -148812822 + MLT1D LTR MaLR 1 503 -2 202 197 42 28 chrX 13787457 13787528 -148812402 + A-rich Low_complexity Low_complexity 2 73 0 1071 266 63 18 chrX 13787562 13787961 -148811969 - LTR16A1 LTR ERVL -40 417 1 254 0 100 67 chrX 13788093 13788153 -148811777 + CT-rich Low_complexity Low_complexity 1 62 0 505 169 165 115 chrX 13788614 13788857 -148811073 - MER112 DNA MER1_type -1 255 1 1750 208 72 11 chrX 13789124 13789557 -148810373 + MLT1C LTR MaLR 6 464 -3 353 229 12 12 chrX 13790554 13790637 -148809293 + MIR SINE MIR 110 192 -70 814 263 199 8 chrX 13790648 13791029 -148808901 + LTR16A1 LTR ERVL 2 455 -2 2121 171 30 0 chrX 13791315 13791712 -148808218 + LTR53 LTR ERVL 108 516 -3 2092 102 0 0 chrX 13791747 13792021 -148807909 + AluSg SINE Alu 1 274 -36 219 36 0 0 chrX 13792027 13792055 -148807875 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 227 210 65 0 chrX 13793452 13793514 -148806416 - MLT1L LTR MaLR -215 400 335 436 330 127 65 chrX 13793545 13793963 -148805967 + L2 LINE L2 2818 3261 -11 315 146 0 0 chrX 13793968 13794023 -148805907 + (TGGA)n Simple_repeat Simple_repeat 4 58 0 349 287 148 0 chrX 13794024 13794139 -148805791 + MIR3 SINE MIR 47 178 -30 196 158 0 26 chrX 13794107 13794145 -148805785 + L3 LINE CR1 1520 1556 -21 * 735 183 112 12 chrX 13795116 13795285 -148804645 + MLT1J2 LTR MaLR 1 186 -264 3476 58 5 7 chrX 13795286 13795733 -148804197 + L1PA7 LINE L1 5708 6153 -1 2235 40 22 4 chrX 13796177 13796485 -148803445 + AluY SINE Alu 1 313 0 1036 279 46 29 chrX 13796511 13796967 -148802963 - LTR16B LTR ERVL 0 464 1 734 284 11 53 chrX 13797161 13797446 -148802484 - MLT1J LTR MaLR -6 505 233 211 176 0 0 chrX 13797873 13797907 -148802023 + polypyrimidine Low_complexity Low_complexity 2 35 0 580 217 54 116 chrX 13801593 13801869 -148798061 + HAL1 LINE L1 78 336 -2171 652 289 123 35 chrX 13801871 13802155 -148797775 + HAL1 LINE L1 499 807 -1700 564 289 71 10 chrX 13802173 13802370 -148797560 - MIR SINE MIR -2 260 52 366 286 102 14 chrX 13802558 13802705 -148797225 + LTR33 LTR ERVL 3 162 -359 735 242 32 5 chrX 13802813 13803003 -148796927 + LTR33 LTR ERVL 327 521 0 1737 155 11 0 chrX 13803254 13803518 -148796412 + AluJb SINE Alu 1 267 -45 532 167 183 0 chrX 13804879 13805005 -148794925 + MER5B DNA MER1_type 1 149 -29 1311 193 175 6 chrX 13805005 13805337 -148794593 + MLT1G1 LTR MaLR 208 595 0 402 243 105 32 chrX 13805339 13805487 -148794443 - MIR SINE MIR -63 145 11 558 233 59 63 chrX 13805892 13806163 -148793767 - L1ME4a LINE L1 -199 5922 5653 892 201 0 0 chrX 13806163 13806327 -148793603 + AluJb SINE Alu 123 286 -26 26 30 0 0 chrX 13806432 13806465 -148793465 + AT_rich Low_complexity Low_complexity 1 33 0 2590 237 115 13 chrX 13806506 13807404 -148792526 + L2 LINE L2 1777 2765 -549 757 157 0 95 chrX 13807480 13807627 -148792303 - FLAM_A SINE Alu 0 133 1 641 209 51 45 chrX 13807633 13807810 -148792120 + L2 LINE L2 3136 3313 0 2146 225 46 0 chrX 13808265 13808763 -148791167 + L1 LINE L1 2537 3057 -3089 2473 77 0 10 chrX 13808774 13809086 -148790844 + AluY SINE Alu 3 311 0 31 0 0 0 chrX 13809134 13809165 -148790765 + AT_rich Low_complexity Low_complexity 1 31 0 8290 103 12 23 chrX 13809204 13810404 -148789526 - Tigger1 DNA MER2_type 0 2418 1233 234 68 182 0 chrX 13810408 13810452 -148789478 + L1 LINE L1 3472 3523 -2623 6083 152 21 8 chrX 13810463 13811819 -148788111 + L1MA9 LINE L1 4794 6170 -142 351 0 0 0 chrX 13811819 13811858 -148788072 + (CA)n Simple_repeat Simple_repeat 1 39 0 6083 152 21 8 chrX 13811858 13811968 -148787962 + L1MA9 LINE L1 6170 6277 -35 528 225 18 0 chrX 13812142 13812253 -148787677 - L2 LINE L2 0 3313 3201 2284 89 3 3 chrX 13812518 13812821 -148787109 - AluY SINE Alu -8 303 1 1583 208 142 52 chrX 13812850 13813364 -148786566 - MER34B LTR ERV1 -5 560 1 2163 103 14 0 chrX 13813467 13813759 -148786171 - AluSx SINE Alu -16 296 1 234 91 0 0 chrX 13813847 13813880 -148786050 + (A)n Simple_repeat Simple_repeat 1 33 0 2417 84 3 0 chrX 13813889 13814199 -148785731 + AluY SINE Alu 1 311 0 294 289 68 38 chrX 13814487 13814656 -148785274 - MIR SINE MIR -62 146 3 1167 173 0 0 chrX 13814963 13815136 -148784794 - FAM SINE Alu -2 173 1 380 246 53 106 chrX 13815165 13815287 -148784643 + L1ME3A LINE L1 5702 5805 -365 2216 68 32 4 chrX 13815287 13815588 -148784342 - AluSq SINE Alu 0 309 1 380 246 53 106 chrX 13815588 13815728 -148784202 + L1ME3A LINE L1 5805 5951 -219 3083 167 47 88 chrX 13816545 13817269 -148782661 + LTR8A LTR ERV1 34 727 0 52 50 0 0 chrX 13817782 13817862 -148782068 + AT_rich Low_complexity Low_complexity 1 80 0 212 164 21 50 chrX 13818499 13818649 -148781281 + GA-rich Low_complexity Low_complexity 1 145 0 622 191 0 9 chrX 13818813 13818928 -148781002 + U5 snRNA snRNA 1 114 -2 338 21 0 42 chrX 13818929 13818977 -148780953 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 312 218 0 0 chrX 13819128 13819183 -148780747 - LTR33 LTR ERVL -91 430 376 2049 141 0 0 chrX 13819683 13819980 -148779950 + AluJo SINE Alu 1 297 -15 757 265 138 2 chrX 13820417 13820814 -148779116 - LTR33 LTR ERVL -2 519 1 348 182 84 94 chrX 13820814 13820952 -148778978 + L1ME4a LINE L1 5664 5797 -324 1071 139 0 37 chrX 13821048 13821285 -148778645 + AluJb SINE Alu 2 297 -15 251 235 106 12 chrX 13821299 13821384 -148778546 + L1ME4a LINE L1 5835 5927 -194 435 95 0 0 chrX 13821477 13821551 -148778379 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 207 259 0 0 chrX 13822083 13822168 -148777762 + (CAT)n Simple_repeat Simple_repeat 1 85 0 214 284 49 0 chrX 13822262 13822343 -148777587 + L3 LINE CR1 655 739 -838 367 161 16 65 chrX 13822380 13822504 -148777426 - Charlie7 DNA MER1_type -42 2570 2453 301 319 0 11 chrX 13823316 13823410 -148776520 + MIR SINE MIR 21 113 -149 186 270 110 100 chrX 13823541 13823641 -148776289 - MER5A DNA MER1_type -34 155 55 1761 143 0 43 chrX 13823645 13823945 -148775985 + AluJo SINE Alu 1 287 -25 2548 58 0 7 chrX 13824159 13824467 -148775463 - AluY SINE Alu -5 306 1 424 264 167 7 chrX 13824733 13824877 -148775053 - MER5A DNA MER1_type -13 176 10 2306 152 102 76 chrX 13824976 13825542 -148774388 - LTR49 LTR ERV1 -14 581 1 198 0 0 0 chrX 13825599 13825621 -148774309 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chrX 13826736 13826758 -148773172 + AT_rich Low_complexity Low_complexity 1 22 0 1937 140 3 3 chrX 13826762 13827047 -148772883 - AluJb SINE Alu -27 285 1 878 256 89 15 chrX 13827052 13827322 -148772608 - L1ME3A LINE L1 -2 6168 5879 1415 192 14 68 chrX 13827381 13827751 -148772179 + MLT1A2 LTR MaLR 1 350 -24 26 30 0 0 chrX 13827757 13827790 -148772140 + AT_rich Low_complexity Low_complexity 1 33 0 658 132 0 0 chrX 13827814 13827905 -148772025 - FRAM SINE Alu -55 121 31 272 169 231 0 chrX 13829669 13829734 -148770196 + MER116 DNA Mariner 1 80 0 31 58 0 0 chrX 13830018 13830070 -148769860 + AT_rich Low_complexity Low_complexity 1 52 0 1109 175 26 14 chrX 13830188 13830407 -148769523 - MER20 DNA MER1_type 0 219 8 676 83 0 10 chrX 13830523 13830619 -148769311 + MER53 DNA DNA 1 95 -94 1928 151 7 13 chrX 13830619 13830924 -148769006 + AluJo SINE Alu 1 303 -9 368 260 73 19 chrX 13831079 13831221 -148768709 + MIR SINE MIR 11 153 -55 302 281 10 31 chrX 13831758 13831854 -148768076 + MIR3 SINE MIR 108 201 -7 2168 112 0 7 chrX 13832167 13832494 -148767436 + AluSx SINE Alu 1 312 0 1991 161 0 0 chrX 13832496 13832800 -148767130 + AluJo SINE Alu 1 304 -8 2594 93 48 20 chrX 13832856 13833210 -148766720 + THE1B LTR MaLR 1 364 0 13101 76 3 6 chrX 13833210 13834794 -148765136 + THE1B-int LTR MaLR 1 1580 0 2471 113 48 20 chrX 13834794 13835148 -148764782 + THE1B LTR MaLR 1 364 0 887 160 0 8 chrX 13835321 13835452 -148764478 - FLAM_C SINE Alu -3 130 1 1888 146 0 11 chrX 13835511 13835823 -148764107 + AluJb SINE Alu 1 309 0 871 306 66 14 chrX 13835859 13836297 -148763633 - L1ME3A LINE L1 -224 5946 5486 2601 100 5 40 chrX 13836318 13836747 -148763183 + L1MA8 LINE L1 5696 6109 -182 843 134 14 157 chrX 13836748 13836964 -148762966 - AluJo SINE Alu -8 304 120 269 143 0 71 chrX 13836964 13837034 -148762896 - L1MD3 LINE L1 -5 7990 7926 3526 148 15 26 chrX 13837034 13837541 -148762389 + L1MB2 LINE L1 5553 6053 -118 2320 112 0 0 chrX 13837541 13837846 -148762084 + AluSc SINE Alu 1 305 -4 3526 148 15 26 chrX 13837846 13837955 -148761975 + L1MB2 LINE L1 6053 6162 -9 1760 135 83 0 chrX 13837955 13838221 -148761709 - AluJo SINE Alu -24 288 1 901 78 94 8 chrX 13838238 13838366 -148761564 - MER85 DNA T2_type 0 139 1 373 239 0 11 chrX 13838371 13838459 -148761471 + L1MC4 LINE L1 6935 7021 -1021 3715 36 0 0 chrX 13838462 13838876 -148761054 + L1PA5 LINE L1 5738 6151 -3 22 70 0 0 chrX 13838876 13838919 -148761011 + AT_rich Low_complexity Low_complexity 1 43 0 444 254 36 0 chrX 13840354 13840464 -148759466 - MER5A DNA MER1_type -75 114 1 1403 160 16 57 chrX 13840597 13840699 -148759231 - L1MB8 LINE L1 0 6178 6073 1707 180 33 44 chrX 13840699 13841065 -148758865 + MLT1A1 LTR MaLR 1 362 -3 1403 160 16 57 chrX 13841065 13841280 -148758650 - L1MB8 LINE L1 -105 6073 5874 1951 163 0 3 chrX 13841282 13841690 -148758240 - AluJb SINE Alu 0 407 1 759 161 0 94 chrX 13842403 13842422 -148757508 - FRAM SINE Alu -158 154 135 2749 127 46 5 chrX 13842422 13842833 -148757097 + MSTA LTR MaLR 1 428 0 759 161 0 94 chrX 13842833 13842883 -148757047 - FRAM SINE Alu -177 135 82 3065 90 28 14 chrX 13842883 13843305 -148756625 + MSTA LTR MaLR 1 428 0 759 161 0 94 chrX 13843305 13843383 -148756547 - FRAM SINE Alu -230 82 20 21 0 0 0 chrX 13844128 13844149 -148755781 + AT_rich Low_complexity Low_complexity 1 21 0 1719 108 12 0 chrX 13844184 13844434 -148755496 - L1MA4 LINE L1 -4 6296 6044 4350 162 26 24 chrX 13844434 13845232 -148754698 - L1MA9 LINE L1 -57 6255 5456 188 406 89 6 chrX 13845453 13845633 -148754297 - L2 LINE L2 -73 3199 3005 413 257 96 15 chrX 13845998 13846134 -148753796 - MIR SINE MIR -6 256 110 462 282 58 51 chrX 13846250 13846406 -148753524 - MER5B DNA MER1_type -16 162 6 758 273 110 35 chrX 13846803 13847177 -148752753 + LTR16C LTR ERVL 90 491 0 22 0 0 0 chrX 13847599 13847621 -148752309 + AT_rich Low_complexity Low_complexity 1 22 0 2288 96 0 19 chrX 13848297 13848637 -148751293 + AluSx SINE Alu 1 312 0 38 51 0 0 chrX 13848639 13848698 -148751232 + AT_rich Low_complexity Low_complexity 1 59 0 267 188 0 59 chrX 13848753 13848854 -148751076 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 849 138 0 0 chrX 13849234 13849357 -148750573 + FAM SINE Alu 1 48 -1 23 54 0 0 chrX 13849708 13849745 -148750185 + AT_rich Low_complexity Low_complexity 1 37 0 724 154 0 17 chrX 13849914 13850031 -148749899 + FLAM_A SINE Alu 23 137 -5 1490 188 115 63 chrX 13851117 13851559 -148748371 - LTR29 LTR ERV1 0 622 158 3675 130 5 33 chrX 13851631 13852009 -148747921 + MER41B LTR ERV1 1 357 -278 2832 101 106 5 chrX 13852009 13852416 -148747514 - MER83 LTR ERV1 0 448 1 3675 130 5 33 chrX 13852416 13852635 -148747295 + MER41B LTR ERV1 357 581 -54 327 293 89 0 chrX 13853167 13853290 -148746640 - L3 LINE CR1 -770 807 674 427 118 0 79 chrX 13854122 13854198 -148745732 + MLT1D LTR MaLR 1 70 -435 2494 119 5 14 chrX 13854198 13854568 -148745362 + THE1C LTR MaLR 1 367 -8 444 40 0 0 chrX 13854568 13854618 -148745312 + THE1B LTR MaLR 315 364 0 11609 102 11 32 chrX 13854618 13856232 -148743698 + THE1C-int LTR MaLR 1 1580 0 2825 86 0 29 chrX 13856232 13856455 -148743475 + THE1C LTR MaLR 1 210 -165 2374 125 36 31 chrX 13856455 13856815 -148743115 - THE1B LTR MaLR -2 362 1 2825 86 0 29 chrX 13856815 13856977 -148742953 + THE1C LTR MaLR 210 375 0 404 258 57 8 chrX 13856977 13857101 -148742829 + MLT1D LTR MaLR 66 195 -310 1602 165 10 46 chrX 13857101 13857404 -148742526 + AluJo SINE Alu 1 292 -20 4982 160 7 49 chrX 13857994 13859206 -148740724 + L1MB5 LINE L1 5014 6174 0 401 327 106 52 chrX 13859227 13859594 -148740336 - L3 LINE CR1 -1050 527 141 644 167 0 0 chrX 13859727 13859829 -148740101 - FLAM_A SINE Alu -1 141 40 903 251 100 22 chrX 13859850 13860169 -148739761 + L2 LINE L2 2829 3172 -141 184 258 47 11 chrX 13860184 13860308 -148739622 + L2 LINE L2 3104 3271 -1 277 345 43 0 chrX 13860335 13860474 -148739456 - L2 LINE L2 0 3313 3169 1850 170 3 0 chrX 13860782 13861076 -148738854 + AluJb SINE Alu 1 295 -17 2021 127 3 13 chrX 13861824 13862124 -148737806 - AluSx SINE Alu -15 297 1 24 0 0 0 chrX 13862130 13862154 -148737776 + AT_rich Low_complexity Low_complexity 1 24 0 1306 106 6 0 chrX 13862178 13862348 -148737582 + AluSg/x SINE Alu 125 295 -17 359 339 122 5 chrX 13862430 13862619 -148737311 - MIR SINE MIR -15 247 37 1907 139 51 0 chrX 13862966 13863261 -148736669 + AluJb SINE Alu 1 310 -2 351 113 0 0 chrX 13863444 13863497 -148736433 + (CA)n Simple_repeat Simple_repeat 1 53 0 1410 313 78 82 chrX 13863562 13863988 -148735942 - L3 LINE CR1 -100 1477 1051 1784 145 71 0 chrX 13863988 13864271 -148735659 - AluJb SINE Alu -9 303 1 1410 313 78 82 chrX 13864271 13865139 -148734791 - L3 LINE CR1 -526 1051 186 1824 151 6 22 chrX 13865139 13865450 -148734480 - AluJb SINE Alu -6 306 1 1410 313 78 82 chrX 13865450 13865597 -148734333 - L3 LINE CR1 -1391 186 40 1745 199 8 45 chrX 13865951 13866328 -148733602 + MLT1A1 LTR MaLR 1 363 -2 1971 165 25 19 chrX 13867099 13867463 -148732467 + L1MB7 LINE L1 5819 6184 0 515 301 138 90 chrX 13867497 13868190 -148731740 + L2 LINE L2 611 1269 -2045 1383 164 124 18 chrX 13868190 13868465 -148731465 - AluJo SINE Alu -8 304 1 515 301 138 90 chrX 13868465 13868921 -148731009 + L2 LINE L2 1269 1701 -1613 1979 108 35 0 chrX 13868921 13869207 -148730723 + AluSx SINE Alu 3 298 -14 515 301 138 90 chrX 13869207 13869512 -148730418 + L2 LINE L2 1701 1990 -1324 2228 201 105 44 chrX 13869512 13870100 -148729830 - MLT1E3 LTR MaLR 0 624 1 515 301 138 90 chrX 13870100 13870605 -148729325 + L2 LINE L2 1990 2667 -647 335 322 114 41 chrX 13871166 13871552 -148728378 + L2 LINE L2 2661 3054 -218 1972 117 0 31 chrX 13872093 13872383 -148727547 - AluSq SINE Alu -32 281 1 390 272 75 49 chrX 13872676 13872841 -148727089 + MIR3 SINE MIR 1 174 -34 931 234 138 65 chrX 13873447 13873844 -148726086 - MLT1J1 LTR MaLR -15 431 6 8032 30 1 6 chrX 13874079 13875322 -148724608 + L1PA5 LINE L1 4916 6154 0 1041 133 7 0 chrX 13875558 13875709 -148724221 + MER5A DNA MER1_type 1 152 -37 197 373 0 49 chrX 13876086 13876188 -148723742 + L2 LINE L2 3176 3272 0 434 101 14 0 chrX 13876380 13876449 -148723481 + (GA)n Simple_repeat Simple_repeat 1 70 0 1203 170 14 31 chrX 13876535 13876758 -148723172 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chrX 13877165 13877187 -148722743 + AT_rich Low_complexity Low_complexity 1 22 0 464 221 149 14 chrX 13877266 13877474 -148722456 - HAL1 LINE L1 -145 2362 2127 24 32 0 0 chrX 13880023 13880054 -148719876 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chrX 13880374 13880394 -148719536 + (CCG)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chrX 13880402 13880430 -148719500 + GC_rich Low_complexity Low_complexity 1 28 0 207 273 16 31 chrX 13880492 13880620 -148719310 + (CCCCG)n Simple_repeat Simple_repeat 4 129 0 216 0 0 0 chrX 13883977 13884001 -148715929 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 266 277 15 0 chrX 13884190 13884255 -148715675 - MIR SINE MIR -98 110 45 1434 145 0 40 chrX 13884494 13884742 -148715188 + AluJo SINE Alu 40 277 -35 441 323 51 37 chrX 13885003 13885297 -148714633 - L2 LINE L2 -1302 2012 1715 333 269 269 13 chrX 13885927 13886076 -148713854 + MIR3 SINE MIR 22 208 0 22 35 0 0 chrX 13886120 13886149 -148713781 + AT_rich Low_complexity Low_complexity 1 29 0 322 273 116 58 chrX 13886710 13886882 -148713048 + MIR SINE MIR 80 261 -1 187 390 124 6 chrX 13887686 13887855 -148712075 + MIR SINE MIR 4 192 -70 675 201 65 47 chrX 13888458 13888672 -148711258 + L1ME3A LINE L1 5944 6161 -9 210 143 0 0 chrX 13889562 13889597 -148710333 + (T)n Simple_repeat Simple_repeat 1 35 0 2260 107 3 0 chrX 13891543 13891843 -148708087 - AluSq SINE Alu -12 301 1 202 225 0 0 chrX 13891972 13892012 -148707918 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2256 112 13 0 chrX 13892065 13892370 -148707560 - AluSx SINE Alu -3 309 1 456 301 88 29 chrX 13892997 13893236 -148706694 - MIR SINE MIR -1 261 9 1571 184 0 35 chrX 13895329 13895617 -148704313 + AluJb SINE Alu 1 278 -34 222 118 0 0 chrX 13895621 13895655 -148704275 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 2165 128 0 0 chrX 13896069 13896373 -148703557 + AluSx SINE Alu 1 304 -8 322 128 192 0 chrX 13896493 13896571 -148703359 + MER112 DNA MER1_type 147 239 -21 23 0 0 0 chrX 13896611 13896634 -148703296 + AT_rich Low_complexity Low_complexity 1 23 0 1106 185 9 44 chrX 13896807 13897034 -148702896 + MER20 DNA MER1_type 1 219 0 2461 74 0 0 chrX 13897212 13897511 -148702419 + AluSc SINE Alu 1 299 -10 757 200 0 8 chrX 13898055 13898180 -148701750 + FLAM_A SINE Alu 1 124 -9 2015 142 0 13 chrX 13898207 13898518 -148701412 - AluJo SINE Alu -5 307 1 524 274 154 33 chrX 13898851 13899150 -148700780 + L1MC4a LINE L1 5563 5897 -1911 338 148 28 0 chrX 13899159 13899232 -148700698 - AluJb SINE Alu -168 134 87 204 286 152 19 chrX 13899331 13899436 -148700494 + L3 LINE CR1 1263 1381 -196 2135 103 3 36 chrX 13900333 13900635 -148699295 + AluSg SINE Alu 1 292 -18 369 0 0 0 chrX 13900636 13900677 -148699253 + (TA)n Simple_repeat Simple_repeat 2 42 0 1516 110 0 20 chrX 13905135 13905381 -148694549 - L1MB2 LINE L1 0 6171 5931 21 0 0 0 chrX 13905777 13905798 -148694132 + AT_rich Low_complexity Low_complexity 1 21 0 659 284 130 16 chrX 13905936 13906507 -148693423 - L1MC5 LINE L1 -50 7911 7276 408 225 218 7 chrX 13906684 13906826 -148693104 - MIR SINE MIR -8 254 83 21 0 0 0 chrX 13907076 13907097 -148692833 + AT_rich Low_complexity Low_complexity 1 21 0 185 333 0 0 chrX 13907501 13907549 -148692381 + L2 LINE L2 3209 3256 -16 24 32 0 0 chrX 13909732 13909763 -148690167 + AT_rich Low_complexity Low_complexity 1 31 0 917 164 27 0 chrX 13910738 13910884 -148689046 + FAM SINE Alu 16 165 -20 312 228 234 66 chrX 13911065 13911232 -148688698 + L1ME LINE L1 5643 5837 -284 1660 165 63 14 chrX 13911322 13911607 -148688323 + AluJo SINE Alu 1 299 -13 2205 112 3 0 chrX 13912827 13913123 -148686807 + AluSx SINE Alu 1 297 -15 1611 162 64 2 chrX 13913337 13913764 -148686166 + L1M4 LINE L1 4960 5419 -749 315 267 81 12 chrX 13914527 13914613 -148685317 + MIR SINE MIR 23 114 -94 21 0 0 0 chrX 13915426 13915447 -148684483 + AT_rich Low_complexity Low_complexity 1 21 0 1171 165 0 34 chrX 13915514 13915720 -148684210 - AluJo SINE Alu -10 302 104 1493 122 0 5 chrX 13915722 13915927 -148684003 - AluSq SINE Alu -109 204 1 48 43 0 0 chrX 13915968 13916037 -148683893 + AT_rich Low_complexity Low_complexity 1 69 0 2377 102 0 3 chrX 13916045 13916358 -148683572 + AluSq SINE Alu 1 312 -1 477 268 0 24 chrX 13916964 13917132 -148682798 + (CATATA)n Simple_repeat Simple_repeat 1 164 0 406 310 191 32 chrX 13917190 13917613 -148682317 - L1MC4a LINE L1 -365 5797 5377 180 333 69 0 chrX 13918033 13918105 -148681825 - MIR3 SINE MIR -51 157 81 23 33 0 0 chrX 13918239 13918269 -148681661 + AT_rich Low_complexity Low_complexity 1 30 0 285 306 42 88 chrX 13918689 13918996 -148680934 + L3 LINE CR1 1262 1554 -23 2297 89 0 32 chrX 13919510 13919825 -148680105 + AluSq SINE Alu 1 305 -8 245 291 48 39 chrX 13920319 13920422 -148679508 - MIR SINE MIR -100 162 59 1750 163 14 17 chrX 13920478 13920767 -148679163 - AluJo SINE Alu -21 291 4 300 290 117 31 chrX 13921674 13921836 -148678094 + MER5B DNA MER1_type 3 178 0 200 200 0 0 chrX 13922346 13922386 -148677544 + CT-rich Low_complexity Low_complexity 2 41 0 2335 57 0 0 chrX 13922888 13923208 -148676722 + AluY SINE Alu 1 320 0 2222 96 0 10 chrX 13923391 13923683 -148676247 + AluSc SINE Alu 1 289 -20 215 289 96 12 chrX 13924109 13924192 -148675738 - MER5B DNA MER1_type -1 177 88 216 148 37 0 chrX 13924192 13924246 -148675684 + (TA)n Simple_repeat Simple_repeat 2 57 0 957 112 0 0 chrX 13924257 13924382 -148675548 - AluJb SINE Alu -187 125 1 419 222 100 0 chrX 13924384 13924474 -148675456 - MER5B DNA MER1_type -79 99 1 208 250 62 0 chrX 13924835 13924883 -148675047 + L2 LINE L2 3262 3312 -1 406 293 105 0 chrX 13925017 13925198 -148674732 - MIR SINE MIR -39 223 24 677 110 0 0 chrX 13925284 13925384 -148674546 - FRAM SINE Alu -7 169 70 2495 90 3 0 chrX 13926196 13926508 -148673422 + AluSp SINE Alu 1 313 0 2259 110 0 0 chrX 13927060 13927359 -148672571 - AluJb SINE Alu -13 299 1 2347 99 0 6 chrX 13927527 13927841 -148672089 + AluSx SINE Alu 1 312 0 209 290 58 58 chrX 13928091 13928229 -148671701 + L2 LINE L2 2344 2481 -833 1076 93 0 7 chrX 13928237 13928377 -148671553 + AluSq SINE Alu 90 228 -85 1997 114 32 0 chrX 13928399 13928679 -148671251 + AluSx SINE Alu 1 289 -23 455 310 70 47 chrX 13928693 13929160 -148670770 + L2 LINE L2 2689 3126 -187 2279 101 3 3 chrX 13929160 13929467 -148670463 - AluSg SINE Alu -3 307 1 455 310 70 47 chrX 13929467 13929628 -148670302 + L2 LINE L2 3126 3282 -31 22 0 0 0 chrX 13930223 13930245 -148669685 + AT_rich Low_complexity Low_complexity 1 22 0 872 186 51 0 chrX 13930507 13930684 -148669246 + MER58A DNA MER1_type 37 222 -2 229 254 20 26 chrX 13930919 13931010 -148668920 + CT-rich Low_complexity Low_complexity 1 90 0 632 92 0 0 chrX 13931155 13931242 -148668688 - AluSp/q SINE Alu -12 301 215 2350 97 3 0 chrX 13931828 13932136 -148667794 - AluSq SINE Alu -4 309 1 2345 89 7 0 chrX 13932359 13932663 -148667267 + AluSx SINE Alu 1 306 -6 21 0 0 0 chrX 13932939 13932960 -148666970 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 13933169 13933192 -148666738 + AT_rich Low_complexity Low_complexity 1 23 0 497 268 30 42 chrX 13933417 13933585 -148666345 - MIR SINE MIR 0 262 97 2241 101 0 25 chrX 13933586 13933903 -148666027 + AluSc SINE Alu 1 309 0 254 326 87 24 chrX 13934023 13934311 -148665619 + L1ME LINE L1 5474 5779 -342 2415 93 0 6 chrX 13934630 13934941 -148664989 + AluSc SINE Alu 1 309 0 1344 99 0 0 chrX 13935492 13935663 -148664267 + AluSq SINE Alu 131 301 -12 709 267 78 38 chrX 13935678 13935914 -148664016 + L1MC4 LINE L1 7096 7321 -721 2472 64 0 3 chrX 13935914 13936211 -148663719 - AluSc SINE Alu -13 296 1 709 267 78 38 chrX 13936211 13936424 -148663506 + L1MC4 LINE L1 7321 7563 -479 603 239 35 39 chrX 13936510 13936765 -148663165 + L1MC4 LINE L1 7789 8042 0 203 216 189 0 chrX 13937065 13937139 -148662791 + MIR SINE MIR 146 233 -29 1167 175 36 8 chrX 13937351 13937602 -148662328 + Tigger2 DNA MER2_type 1 258 -2460 2461 60 3 0 chrX 13937607 13937908 -148662022 + AluSq SINE Alu 1 302 -11 2417 93 0 3 chrX 13938022 13938332 -148661598 + AluSx SINE Alu 1 309 -3 2157 110 34 133 chrX 13938457 13938922 -148661008 + Tigger2 DNA MER2_type 251 669 -2049 1351 91 0 0 chrX 13938924 13939100 -148660830 + AluSg/x SINE Alu 135 310 0 1043 105 0 0 chrX 13939133 13939276 -148660654 - AluSg SINE Alu -167 143 1 9183 118 26 27 chrX 13939276 13940831 -148659099 + Tigger2 DNA MER2_type 1166 2718 0 656 129 152 3 chrX 13940850 13941010 -148658920 + MER46A DNA MER2_type 1 236 0 2303 96 3 0 chrX 13941279 13941571 -148658359 + AluSx SINE Alu 1 293 -19 2125 127 3 7 chrX 13942671 13942978 -148656952 - AluSx SINE Alu -6 306 1 1711 132 19 68 chrX 13943011 13943155 -148656775 + AluJb SINE Alu 1 124 -188 2403 88 0 16 chrX 13943155 13943472 -148656458 + AluSx SINE Alu 1 312 0 1711 132 19 68 chrX 13943472 13943637 -148656293 + AluJb SINE Alu 124 295 -17 234 260 0 20 chrX 13943782 13943832 -148656098 - L2 LINE L2 -15 3257 3209 8087 81 3 0 chrX 13943947 13945028 -148654902 + THE1B-int LTR MaLR 497 1580 0 2205 122 48 20 chrX 13945028 13945380 -148654550 + THE1B LTR MaLR 1 362 -2 1534 90 0 14 chrX 13945381 13945603 -148654327 - THE1C LTR MaLR -156 219 1 10843 102 11 32 chrX 13945603 13947217 -148652713 - THE1C-int LTR MaLR 0 1580 1 416 40 0 0 chrX 13947217 13947267 -148652663 - THE1C LTR MaLR 0 364 315 1446 136 8 8 chrX 13947267 13947509 -148652421 - THE1C LTR MaLR -8 367 126 250 261 15 0 chrX 13997945 13998010 -148601920 + MLT1G LTR MaLR 13 78 -512 1065 213 66 35 chrX 13998043 13998409 -148601521 + L1MD3 LINE L1 7423 7799 -196 445 188 92 135 chrX 13998419 13998648 -148601282 - MER20 DNA MER1_type 0 219 1 239 179 125 0 chrX 13998649 13998705 -148601225 + L1MD3 LINE L1 7916 7978 -17 226 222 0 0 chrX 13998707 13998727 -148601203 + (TA)n Simple_repeat Simple_repeat 2 21 -34 1811 101 76 153 chrX 13998727 13998919 -148601011 + THE1C LTR MaLR 1 147 -228 1738 148 0 0 chrX 13998919 13999175 -148600755 - AluSx SINE Alu -56 256 1 1811 101 76 153 chrX 13999175 13999388 -148600542 + THE1C LTR MaLR 147 375 0 226 222 0 0 chrX 13999388 13999421 -148600509 + (TA)n Simple_repeat Simple_repeat 20 55 0 1930 142 10 27 chrX 13999602 13999897 -148600033 + AluJo SINE Alu 2 291 -21 229 167 0 0 chrX 13999978 14000014 -148599916 - tRNA-Arg-AGA tRNA tRNA -40 36 1 1928 163 0 3 chrX 14002743 14003056 -148596874 - AluSx SINE Alu 0 312 1 321 242 40 94 chrX 14003730 14003879 -148596051 + L2 LINE L2 3108 3248 -65 44 114 0 0 chrX 14004014 14004233 -148595697 + AT_rich Low_complexity Low_complexity 1 219 0 770 236 94 15 chrX 14004325 14004387 -148595543 + MER20 DNA MER1_type 1 57 -162 2094 119 0 10 chrX 14004387 14004690 -148595240 - AluSx SINE Alu 0 312 13 770 236 94 15 chrX 14004690 14004830 -148595100 + MER20 DNA MER1_type 57 219 0 1859 156 19 7 chrX 14004847 14005155 -148594775 - AluSx SINE Alu 0 312 1 389 259 132 38 chrX 14005155 14005526 -148594404 - L1M2 LINE L1 -369 5797 5401 566 200 67 67 chrX 14005703 14005868 -148594062 + MER20 DNA MER1_type 1 165 -54 231 153 68 17 chrX 14005898 14005957 -148593973 + MER20 DNA MER1_type 158 219 0 312 261 90 145 chrX 14006339 14007061 -148592869 - L1M2 LINE L1 -5389 1460 718 542 185 0 144 chrX 14008684 14008830 -148591100 + MER20 DNA MER1_type 1 125 -94 1088 229 75 20 chrX 14008874 14009232 -148590698 - LTR37A LTR ERV1 -4 422 45 1046 208 141 30 chrX 14010291 14010661 -148589269 - L1M4 LINE L1 -2787 3359 2949 192 77 0 0 chrX 14010963 14010989 -148588941 + (GA)n Simple_repeat Simple_repeat 1 26 0 195 297 30 89 chrX 14011149 14011250 -148588680 + L3b LINE CR1 1211 1305 -278 1763 102 105 63 chrX 14011288 14011399 -148588531 + AluJb SINE Alu 1 106 -206 2270 104 7 0 chrX 14011399 14011698 -148588232 + AluSx SINE Alu 1 301 -11 2299 93 0 28 chrX 14011698 14012019 -148587911 + AluSq SINE Alu 1 312 -1 1763 102 105 63 chrX 14012019 14012191 -148587739 + AluJb SINE Alu 105 297 -15 505 133 0 56 chrX 14012716 14012806 -148587124 + L1PB4 LINE L1 6059 6143 -13 23 0 0 0 chrX 14013026 14013049 -148586881 + AT_rich Low_complexity Low_complexity 1 23 0 2297 99 7 3 chrX 14013417 14013721 -148586209 - AluSx SINE Alu -7 305 1 597 291 57 0 chrX 14013784 14013942 -148585988 - MER20 DNA MER1_type 0 219 53 22 0 0 0 chrX 14014599 14014621 -148585309 + AT_rich Low_complexity Low_complexity 1 22 0 1875 149 14 3 chrX 14015056 14015352 -148584578 + AluJb SINE Alu 1 299 -13 2743 195 18 35 chrX 14015421 14015985 -148583945 + MLT2B3 LTR ERVL 1 554 0 1807 93 135 0 chrX 14016891 14017150 -148582780 + AluSg SINE Alu 1 294 -16 2369 102 0 3 chrX 14017460 14017773 -148582157 - AluSx SINE Alu 0 312 1 989 191 29 12 chrX 14017908 14018081 -148581849 + MER45A DNA AcHobo 3 178 0 188 215 140 84 chrX 14018338 14018387 -148581543 + L2 LINE L2 3143 3188 -84 1251 238 100 6 chrX 14018387 14018698 -148581232 - MER58B DNA MER1_type -1 340 1 188 215 140 84 chrX 14018698 14018755 -148581175 + L2 LINE L2 3188 3255 -17 2376 151 20 20 chrX 14019713 14020103 -148579827 - MLT1B LTR MaLR 0 390 1 314 266 85 62 chrX 14020465 14020642 -148579288 + L2 LINE L2 2915 3095 -218 1745 187 3 10 chrX 14021174 14021474 -148578456 - AluJo SINE Alu -14 298 1 425 194 112 0 chrX 14022550 14022648 -148577282 + L1ME LINE L1 5599 5707 -463 216 182 0 0 chrX 14022668 14022701 -148577229 + MIR SINE MIR 219 251 -11 513 181 85 0 chrX 14023106 14023200 -148576730 + MER3 DNA MER1_type 1 102 -107 21 0 0 0 chrX 14023536 14023557 -148576373 + AT_rich Low_complexity Low_complexity 1 21 0 1701 102 146 0 chrX 14023673 14023927 -148576003 + AluSq SINE Alu 1 291 -22 315 71 0 0 chrX 14023929 14023971 -148575959 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 1452 85 0 0 chrX 14024538 14024715 -148575215 + L1PA15 LINE L1 5985 6161 -4 1615 161 12 56 chrX 14025729 14026052 -148573878 - AluJo SINE Alu 0 312 4 31 0 0 0 chrX 14026135 14026166 -148573764 + AT_rich Low_complexity Low_complexity 1 31 0 346 305 118 38 chrX 14026169 14026569 -148573361 - L1MC/D LINE L1 -2094 5714 5283 2180 98 20 0 chrX 14026602 14026898 -148573032 - AluSx SINE Alu -10 302 1 490 298 88 63 chrX 14026985 14027509 -148572421 - L1MC/D LINE L1 -1924 4222 3686 323 254 121 51 chrX 14027905 14028294 -148571636 - L1MC/D LINE L1 -2898 3248 2833 1089 118 51 41 chrX 14028491 14028686 -148571244 - L1PA16 LINE L1 -2 6164 5968 2143 131 0 0 chrX 14029264 14029561 -148570369 - AluSx SINE Alu -5 307 11 1323 127 18 57 chrX 14030575 14030803 -148569127 + MER20 DNA MER1_type 1 219 0 2200 103 7 10 chrX 14030846 14031148 -148568782 + AluSx SINE Alu 1 301 -11 201 74 0 0 chrX 14031551 14031578 -148568352 + (T)n Simple_repeat Simple_repeat 1 27 0 253 111 0 0 chrX 14031578 14031614 -148568316 - AluSx SINE Alu -272 36 1 1092 122 43 16 chrX 14031973 14032161 -148567769 - L1MA4 LINE L1 0 6300 6108 1939 154 0 26 chrX 14032161 14032467 -148567463 + AluSx SINE Alu 1 298 -14 235 216 0 0 chrX 14032468 14032519 -148567411 + L1MC4 LINE L1 6652 6702 -1340 * 300 75 0 0 chrX 14032514 14032554 -148567376 - L1MA4 LINE L1 -178 6122 6083 370 270 133 5 chrX 14032554 14032750 -148567180 - L1ME LINE L1 -508 5613 5393 4313 86 9 0 chrX 14032764 14033308 -148566622 - L1PA15 LINE L1 -1 6164 5616 1816 106 33 4 chrX 14033499 14033774 -148566156 - L1PA15 LINE L1 -573 5592 5310 1908 155 9 0 chrX 14033895 14034212 -148565718 - L1 LINE L1 -1280 4866 4547 738 109 0 0 chrX 14034215 14034316 -148565614 - L1PA15 LINE L1 -19 6146 6046 184 306 113 0 chrX 14034608 14034670 -148565260 + L2 LINE L2 3137 3205 -67 1316 181 4 0 chrX 14034915 14035141 -148564789 - AluJb SINE Alu -1 311 85 2284 99 16 3 chrX 14035722 14036026 -148563904 + AluSx SINE Alu 1 308 -4 619 273 12 6 chrX 14036319 14036480 -148563450 - MER117 DNA MER1_type -30 167 6 4564 62 50 27 chrX 14036531 14037125 -148562805 - LTR14B LTR ERVK 0 608 1 1947 129 0 11 chrX 14037399 14037686 -148562244 + AluSx SINE Alu 1 284 -28 2383 99 3 3 chrX 14038509 14038822 -148561108 + AluSq SINE Alu 1 313 0 592 301 74 5 chrX 14039024 14039227 -148560703 - L2 LINE L2 -2 3311 3095 2136 98 7 0 chrX 14039255 14039559 -148560371 - AluSx SINE Alu 0 311 6 277 303 174 7 chrX 14039562 14039717 -148560213 + MER5A DNA MER1_type 9 189 0 * 581 310 83 31 chrX 14039717 14039918 -148560012 - L2 LINE L2 -244 3069 2857 2131 106 3 0 chrX 14039969 14040275 -148559655 - AluSp SINE Alu 0 307 1 655 247 37 0 chrX 14040365 14040527 -148559403 - MER117 DNA MER1_type -26 171 4 1769 164 35 3 chrX 14040622 14040909 -148559021 - AluJb SINE Alu -16 296 1 2532 69 7 0 chrX 14041093 14041397 -148558533 + AluSq SINE Alu 1 306 -7 2510 76 3 9 chrX 14041397 14041712 -148558218 + AluSp SINE Alu 1 313 0 223 325 44 18 chrX 14045987 14046101 -148553829 + L2 LINE L2 2229 2345 -969 1888 129 13 26 chrX 14046108 14046410 -148553520 + AluSx SINE Alu 1 298 -14 2108 119 3 7 chrX 14046510 14046805 -148553125 - AluSx SINE Alu -18 294 1 204 40 0 0 chrX 14046828 14046853 -148553077 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1170 153 22 40 chrX 14046905 14047128 -148552802 + MER20 DNA MER1_type 1 219 0 751 161 0 27 chrX 14047465 14047614 -148552316 + L1PA16 LINE L1 6022 6166 0 21 0 0 0 chrX 14047848 14047869 -148552061 + AT_rich Low_complexity Low_complexity 1 21 0 2445 85 0 16 chrX 14048737 14049054 -148550876 + AluSx SINE Alu 1 312 0 2137 169 11 6 chrX 14049180 14049534 -148550396 - MLT1A1 LTR MaLR 0 365 10 221 347 60 41 chrX 14049566 14049883 -148550047 + L2 LINE L2 2881 3203 -110 1814 188 5 52 chrX 14049946 14049982 -148549948 + MLT1A1 LTR MaLR 1 37 -328 2072 141 0 6 chrX 14049982 14050294 -148549636 + AluSx SINE Alu 1 310 -2 1814 188 5 52 chrX 14050294 14050640 -148549290 + MLT1A1 LTR MaLR 37 365 0 2064 74 0 119 chrX 14051067 14051267 -148548663 - AluSg SINE Alu -4 296 150 2249 85 0 24 chrX 14051267 14051562 -148548368 - AluSc SINE Alu -21 288 1 2064 74 0 119 chrX 14051562 14051697 -148548233 - AluSg SINE Alu -150 150 1 2411 70 0 3 chrX 14051719 14052018 -148547912 - AluY SINE Alu -13 298 1 957 127 0 0 chrX 14052036 14052162 -148547768 - FLAM_C SINE Alu -17 126 1 882 198 13 17 chrX 14052763 14052995 -148546935 + MER33 DNA MER1_type 56 286 -38 865 153 0 0 chrX 14053000 14053137 -148546793 - FLAM_C SINE Alu -6 137 1 235 156 0 44 chrX 14053789 14053834 -148546096 + MER3 DNA MER1_type 5 47 -162 242 111 0 111 chrX 14053860 14053914 -148546016 + MER3 DNA MER1_type 145 192 -17 6126 98 29 30 chrX 14054548 14054866 -148545064 + MER4D LTR ERV1 1 318 -585 2264 114 0 3 chrX 14054866 14055164 -148544766 - AluSq SINE Alu -16 297 1 6126 98 29 30 chrX 14055164 14055556 -148544374 + MER4D LTR ERV1 318 712 -191 4934 115 39 31 chrX 14055556 14056052 -148543878 - MER4E LTR ERV1 0 779 273 2536 58 0 0 chrX 14056052 14056347 -148543583 - AluY SINE Alu -16 295 1 4934 115 39 31 chrX 14056347 14056623 -148543307 - MER4E LTR ERV1 -506 273 1 6126 98 29 30 chrX 14056623 14056815 -148543115 + MER4D LTR ERV1 712 903 0 854 220 22 0 chrX 14057774 14057956 -148541974 + MER20 DNA MER1_type 34 219 0 302 214 0 0 chrX 14058533 14058589 -148541341 - FAM SINE Alu 0 179 124 250 45 45 0 chrX 14059263 14059307 -148540623 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 347 130 0 0 chrX 14059884 14059938 -148539992 - AluSq/x SINE Alu -164 139 86 980 159 12 147 chrX 14059940 14060192 -148539738 - AluJo SINE Alu -94 218 1 3543 127 9 71 chrX 14060360 14061012 -148538918 + LTR9 LTR ERV1 1 612 0 486 219 22 87 chrX 14061153 14061336 -148538594 - L1MC5 LINE L1 -51 7910 7740 1109 164 53 40 chrX 14061381 14061550 -148538380 + LTR8A LTR ERV1 499 673 -54 3402 144 33 76 chrX 14061550 14062272 -148537658 + LTR8 LTR ERV1 1 691 0 1109 164 53 40 chrX 14062272 14062328 -148537602 + LTR8A LTR ERV1 673 727 0 2085 76 0 36 chrX 14062446 14062723 -148537207 + AluSc SINE Alu 1 267 -42 1542 168 43 20 chrX 14063275 14063578 -148536352 - L1MB4 LINE L1 -6 6174 5865 2538 74 3 0 chrX 14063602 14063912 -148536018 - AluSx SINE Alu -1 311 1 1559 267 61 55 chrX 14065280 14065800 -148534130 - L2 LINE L2 -15 3298 2782 934 195 18 53 chrX 14065800 14066026 -148533904 - MER20 DNA MER1_type -1 218 1 1559 267 61 55 chrX 14066026 14066121 -148533809 - L2 LINE L2 -531 2782 2689 2163 100 0 47 chrX 14066121 14066441 -148533489 + AluSx SINE Alu 1 305 -7 1559 267 61 55 chrX 14066441 14066790 -148533140 - L2 LINE L2 -624 2689 2328 2064 85 34 30 chrX 14067024 14067319 -148532611 + AluSg1 SINE Alu 1 296 -13 2568 62 0 3 chrX 14069560 14069865 -148530065 - AluSq SINE Alu -9 304 1 990 201 39 0 chrX 14070171 14070375 -148529555 + MER20 DNA MER1_type 1 212 -7 666 182 133 27 chrX 14070375 14070687 -148529243 - L1MD3 LINE L1 -80 7915 7448 241 228 38 13 chrX 14070703 14070782 -148529148 - L1MB4 LINE L1 -2091 5717 5637 552 294 81 22 chrX 14070918 14071190 -148528740 - L1MB4 LINE L1 -2266 5542 5255 392 250 0 0 chrX 14071194 14071282 -148528648 + L2 LINE L2 3225 3312 -1 428 299 112 43 chrX 14071287 14072221 -148527709 - L1MB4 LINE L1 -913 5233 4235 447 265 64 80 chrX 14072366 14072740 -148527190 - L1MB4 LINE L1 -2157 3989 3622 5553 106 50 1 chrX 14073861 14074683 -148525247 + L1PA16 LINE L1 5304 6165 -1 217 287 43 21 chrX 14074731 14074825 -148525105 + GA-rich Low_complexity Low_complexity 1 96 0 2369 202 39 22 chrX 14075791 14076325 -148523605 + MER74A LTR ERVL 4 546 -12 418 231 26 26 chrX 14076440 14076557 -148523373 + MIR SINE MIR 53 169 -93 2247 102 0 13 chrX 14076689 14076993 -148522937 - AluSx SINE Alu -12 300 1 1703 148 46 24 chrX 14077065 14077404 -148522526 - Charlie5 DNA MER1_type -11 2613 2264 2274 114 7 0 chrX 14077404 14077712 -148522218 - AluSx SINE Alu -2 310 1 1703 148 46 24 chrX 14077712 14077744 -148522186 - Charlie5 DNA MER1_type -360 2264 2234 549 222 43 0 chrX 14077752 14077869 -148522061 - MER3 DNA MER1_type -87 122 48 2029 136 7 13 chrX 14078528 14078837 -148521093 + AluSx SINE Alu 1 307 -5 1541 188 38 7 chrX 14078922 14079210 -148520720 + AluJo SINE Alu 2 298 -14 2189 149 60 56 chrX 14079292 14079477 -148520453 + MSTB1 LTR MaLR 1 184 -248 1748 157 0 58 chrX 14079477 14079790 -148520140 - AluJo SINE Alu -17 295 1 2189 149 60 56 chrX 14079790 14080034 -148519896 + MSTB1 LTR MaLR 184 432 0 280 340 98 67 chrX 14080518 14080833 -148519097 + L2 LINE L2 2932 3256 -16 2884 142 57 29 chrX 14081226 14081554 -148518376 + L1MB3 LINE L1 5618 5935 -248 2301 110 0 0 chrX 14081554 14081853 -148518077 + AluSx SINE Alu 1 299 -13 180 0 0 0 chrX 14081853 14081873 -148518057 + (CAAG)n Simple_repeat Simple_repeat 2 21 0 2884 142 57 29 chrX 14081873 14082087 -148517843 + L1MB3 LINE L1 5934 6176 -7 1041 171 28 19 chrX 14083701 14083912 -148516018 + MER20 DNA MER1_type 1 213 -6 518 184 123 9 chrX 14084020 14084134 -148515796 - L1PA16 LINE L1 -9 6157 6031 1286 195 27 4 chrX 14085920 14086182 -148513748 + MER33 DNA MER1_type 57 324 0 578 46 46 0 chrX 14086683 14086770 -148513160 + L1PA13 LINE L1 6072 6162 -1 2058 102 3 14 chrX 14087214 14087509 -148512421 - AluSc SINE Alu -17 292 1 1745 92 39 4 chrX 14087961 14088190 -148511740 - AluSx SINE Alu -75 237 1 631 229 93 24 chrX 14089129 14089334 -148510596 + MER20 DNA MER1_type 1 219 0 692 168 58 7 chrX 14091805 14091942 -148507988 - MLT1C LTR MaLR -22 445 302 1706 129 19 4 chrX 14091948 14092204 -148507726 + MLT2D LTR ERVL 4 263 -151 1703 138 52 128 chrX 14092229 14092650 -148507280 + MSTD LTR MaLR 8 396 0 596 136 100 0 chrX 14092651 14092761 -148507169 + MLT2D LTR ERVL 254 374 -40 387 160 0 0 chrX 14092761 14092836 -148507094 + (CA)n Simple_repeat Simple_repeat 2 76 0 278 91 68 0 chrX 14092836 14092880 -148507050 + MLT2D LTR ERVL 366 412 -2 877 169 156 38 chrX 14092897 14093134 -148506796 - MLT1C LTR MaLR -202 265 1 198 0 0 0 chrX 14096942 14096964 -148502966 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chrX 14097919 14097940 -148501990 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chrX 14099198 14099238 -148500692 + (TG)n Simple_repeat Simple_repeat 1 40 0 206 278 97 0 chrX 14099924 14099996 -148499934 + L2 LINE L2 3171 3249 -64 531 0 0 0 chrX 14100146 14100205 -148499725 + (CA)n Simple_repeat Simple_repeat 1 59 0 758 170 7 14 chrX 14100307 14100448 -148499482 - MER20 DNA MER1_type -79 140 1 387 0 0 0 chrX 14100733 14100776 -148499154 + (TG)n Simple_repeat Simple_repeat 2 44 0 2086 140 0 10 chrX 14100776 14101090 -148498840 - AluJb SINE Alu 0 312 2 321 256 237 9 chrX 14102465 14102684 -148497246 + L1 LINE L1 3687 3955 -2191 822 139 0 28 chrX 14103235 14103379 -148496551 + FRAM SINE Alu 34 173 -3 383 256 51 88 chrX 14103383 14103598 -148496332 + L1ME4a LINE L1 5871 6077 -44 2200 81 0 3 chrX 14103812 14104129 -148495801 - AluSg SINE Alu 0 316 1 1786 92 8 8 chrX 14104834 14105094 -148494836 - L1PA15 LINE L1 -7 6158 5899 744 186 133 21 chrX 14105351 14105539 -148494391 - MER3 DNA MER1_type 0 209 1 1019 109 0 0 chrX 14105619 14105766 -148494164 - L1PA15 LINE L1 -34 6131 5985 916 256 4 53 chrX 14107509 14107775 -148492155 - MIR SINE MIR -1 261 9 650 313 102 68 chrX 14107805 14109211 -148490719 - L2 LINE L2 -43 3229 1016 369 248 62 0 chrX 14109335 14109448 -148490482 - L1ME LINE L1 -452 5710 5591 1822 140 21 11 chrX 14110240 14110558 -148489372 - AluJb SINE Alu 0 321 1 375 213 0 0 chrX 14110673 14110748 -148489182 + FLAM SINE Alu 43 117 -16 244 304 115 58 chrX 14110938 14111129 -148488801 + L2 LINE L2 2748 2949 -365 1838 124 73 88 chrX 14111158 14111554 -148488376 - MLT1B LTR MaLR 0 390 1 294 29 0 0 chrX 14111858 14111893 -148488037 + (TG)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chrX 14112351 14112375 -148487555 + (TA)n Simple_repeat Simple_repeat 1 24 0 29 28 0 0 chrX 14113214 14113250 -148486680 + AT_rich Low_complexity Low_complexity 1 36 0 2017 114 27 30 chrX 14113786 14114084 -148485846 + AluJb SINE Alu 1 297 -15 294 85 0 0 chrX 14114107 14114154 -148485776 - MADE1 DNA Mariner -3 77 31 203 250 191 12 chrX 14114757 14114841 -148485089 - L3 LINE CR1 -80 1497 1399 182 229 0 0 chrX 14116240 14116275 -148483655 - L2 LINE L2 -17 3255 3221 207 244 0 0 chrX 14117544 14117622 -148482308 + GA-rich Low_complexity Low_complexity 3 80 0 203 182 0 23 chrX 14117724 14117768 -148482162 + A-rich Low_complexity Low_complexity 4 46 0 2127 113 7 0 chrX 14117984 14118284 -148481646 - AluSx SINE Alu -9 303 2 183 42 0 0 chrX 14118460 14118484 -148481446 + (CAA)n Simple_repeat Simple_repeat 1 24 0 186 321 170 0 chrX 14119775 14119881 -148480049 + L2 LINE L2 3148 3271 -1 478 205 253 6 chrX 14120837 14120884 -148479046 - L1MD3 LINE L1 -34 7961 7927 966 142 69 64 chrX 14120884 14121102 -148478828 + MER20 DNA MER1_type 1 219 0 478 205 253 6 chrX 14121102 14121220 -148478710 - L1MD3 LINE L1 -68 7927 7755 372 137 14 0 chrX 14121222 14121295 -148478635 - L1MC4a LINE L1 -260 7548 7475 183 409 9 36 chrX 14121531 14121641 -148478289 - MIR3 SINE MIR -90 118 12 369 212 103 20 chrX 14121885 14122031 -148477899 + L2 LINE L2 3091 3248 -65 2308 91 3 0 chrX 14122258 14122555 -148477375 - AluSg SINE Alu -12 298 1 22 35 0 0 chrX 14122558 14122587 -148477343 + AT_rich Low_complexity Low_complexity 1 29 0 772 227 89 10 chrX 14122596 14122799 -148477131 + MER20 DNA MER1_type 1 219 0 328 191 66 24 chrX 14122803 14122950 -148476980 - L1M2 LINE L1 -368 5786 5681 229 296 72 26 chrX 14123012 14123164 -148476766 - L1ME LINE L1 -596 5570 5412 507 200 67 67 chrX 14123354 14123519 -148476411 + MER20 DNA MER1_type 1 165 -54 204 125 0 0 chrX 14123523 14123555 -148476375 + (CCCCCT)n Simple_repeat Simple_repeat 3 34 0 351 274 98 115 chrX 14123783 14124722 -148475208 - L1M2 LINE L1 -5389 1460 315 499 192 0 144 chrX 14126334 14126480 -148473450 + MER20 DNA MER1_type 1 125 -94 930 237 70 14 chrX 14126524 14126882 -148473048 - LTR37A LTR ERV1 -4 422 45 1871 149 10 32 chrX 14127966 14128275 -148471655 - AluJo SINE Alu -10 302 1 487 276 30 8 chrX 14128296 14128430 -148471500 - MIR SINE MIR -106 156 20 574 224 0 0 chrX 14129242 14129367 -148470563 + MER33 DNA MER1_type 6 130 -194 825 142 149 0 chrX 14129377 14129408 -148470522 + AluJo SINE Alu 85 110 -202 369 0 0 0 chrX 14129408 14129449 -148470481 + (CA)n Simple_repeat Simple_repeat 2 42 0 825 142 149 0 chrX 14129449 14129551 -148470379 + AluJo SINE Alu 110 238 -74 189 0 0 0 chrX 14129564 14129585 -148470345 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 541 189 98 0 chrX 14129597 14129750 -148470180 + MER33 DNA MER1_type 196 363 0 477 310 60 74 chrX 14130065 14130349 -148469581 + L2 LINE L2 2992 3271 -1 2203 179 22 43 chrX 14130539 14131030 -148468900 - MER66B LTR ERV1 -5 481 1 503 259 108 38 chrX 14132056 14132214 -148467716 + MER5A DNA MER1_type 16 184 -5 267 281 0 0 chrX 14133040 14133097 -148466833 + MIR SINE MIR 1 57 -205 399 205 36 0 chrX 14133298 14133381 -148466549 + MIR SINE MIR 177 262 0 533 320 117 5 chrX 14134132 14134338 -148465592 + MIR SINE MIR 34 262 0 472 154 45 0 chrX 14134502 14134612 -148465318 - L1MA9 LINE L1 -10 6302 6188 4074 117 69 2 chrX 14134625 14135679 -148464251 - L1MA8 LINE L1 -377 5914 4766 250 125 167 0 chrX 14135750 14135798 -148464132 + MER63 DNA MER1_type 27 708 -354 228 83 83 0 chrX 14135819 14135855 -148464075 + MER63 DNA MER1_type 668 706 -354 272 229 29 0 chrX 14135918 14135988 -148463942 + MER63 DNA MER1_type 990 1061 -1 2487 17 0 7 chrX 14136106 14136429 -148463501 - L1PA2 LINE L1 0 6155 5866 416 88 44 0 chrX 14136576 14136644 -148463286 + (ATGGTG)n Simple_repeat Simple_repeat 4 74 0 284 295 32 21 chrX 14136662 14136757 -148463173 + MIR3 SINE MIR 9 104 -104 192 373 20 29 chrX 14137139 14137241 -148462689 - L2 LINE L2 -20 3293 3193 226 322 61 19 chrX 14137592 14137726 -148462204 + MIR3 SINE MIR 8 149 -67 262 105 0 0 chrX 14137731 14137769 -148462161 + tRNA-Ser-TCA tRNA tRNA 1 38 -47 199 382 59 0 chrX 14137769 14137871 -148462059 + MIR SINE MIR 139 246 -16 374 286 71 18 chrX 14137901 14138013 -148461917 - MIR SINE MIR -143 119 2 2337 77 27 3 chrX 14138179 14138476 -148461454 - AluY SINE Alu -7 304 1 2239 85 0 0 chrX 14138486 14138789 -148461141 - AluSx SINE Alu 0 304 2 492 18 0 0 chrX 14140669 14140726 -148459204 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 266 153 17 0 chrX 14140825 14140884 -148459046 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 357 293 43 0 chrX 14140918 14141058 -148458872 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 777 244 131 47 chrX 14141079 14141506 -148458424 - L1MC4 LINE L1 -486 7556 7094 327 22 0 0 chrX 14141536 14141581 -148458349 + L1MA9 LINE L1 6262 6306 -6 332 0 0 0 chrX 14141656 14141697 -148458233 - L1PA6 LINE L1 -4 6150 6110 210 226 38 0 chrX 14142637 14142690 -148457240 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 2055 219 72 53 chrX 14144174 14144456 -148455474 + MLT1E LTR MaLR 1 276 -317 1149 111 162 0 chrX 14144456 14144654 -148455276 + MER30 DNA MER1_type 1 230 0 2055 219 72 53 chrX 14144654 14144951 -148454979 + MLT1E LTR MaLR 276 591 -2 622 287 71 19 chrX 14144952 14145220 -148454710 - LTR16A LTR ERVL -110 340 59 474 159 80 35 chrX 14145654 14145767 -148454163 - ORSL DNA AcHobo -157 118 1 3425 24 2 7 chrX 14146009 14146420 -148453510 - L1PA4 LINE L1 0 6155 5747 204 233 0 0 chrX 14146464 14146507 -148453423 - L2 LINE L2 -79 3193 3151 633 180 108 41 chrX 14146911 14146976 -148452954 + MER106A DNA MER1_type 30 89 -147 2601 141 21 2 chrX 14146976 14147396 -148452534 - MSTA LTR MaLR 0 428 1 633 180 108 41 chrX 14147396 14147524 -148452406 + MER106A DNA MER1_type 89 236 0 23 86 0 0 chrX 14148510 14148568 -148451362 + AT_rich Low_complexity Low_complexity 1 58 0 229 193 35 0 chrX 14149328 14149385 -148450545 + MER116 DNA Mariner 3 61 -19 238 347 44 48 chrX 14149819 14150067 -148449863 + L2 LINE L2 1824 2070 -1244 571 198 141 93 chrX 14150373 14150621 -148449309 + MER46C DNA MER2_type 5 264 -74 194 365 0 0 chrX 14150628 14150680 -148449250 + MIR SINE MIR 49 100 -108 228 318 35 0 chrX 14152426 14152511 -148447419 - MIR SINE MIR -95 167 80 2077 140 68 51 chrX 14152630 14153045 -148446885 + MSTB LTR MaLR 1 422 -4 2340 105 0 6 chrX 14153396 14153711 -148446219 - AluSq SINE Alu 0 313 1 454 270 74 7 chrX 14153844 14153992 -148445938 + L2 LINE L2 2700 2857 -457 427 382 77 0 chrX 14154311 14154557 -148445373 - L3b LINE CR1 -52 1531 1267 202 264 305 11 chrX 14154693 14154867 -148445063 + MIR SINE MIR 34 258 -4 2532 93 0 0 chrX 14154938 14155250 -148444680 - AluSx SINE Alu 0 312 1 933 177 141 0 chrX 14155467 14155659 -148444271 - MER20 DNA MER1_type 0 219 1 921 246 85 0 chrX 14156009 14156233 -148443697 + MIR SINE MIR 20 262 0 24 0 0 0 chrX 14158588 14158612 -148441318 + AT_rich Low_complexity Low_complexity 1 24 0 2209 104 0 0 chrX 14158915 14159204 -148440726 - AluSx SINE Alu -21 291 3 763 156 19 99 chrX 14159569 14159780 -148440150 - L2 LINE L2 -8 3305 3112 7074 55 10 25 chrX 14160666 14161697 -148438233 - L1PA8 LINE L1 0 6172 5150 2435 84 0 10 chrX 14161697 14162006 -148437924 + AluSq SINE Alu 1 306 -7 7074 55 10 25 chrX 14162006 14162342 -148437588 - L1PA8 LINE L1 -1022 5150 4811 2211 260 60 20 chrX 14162499 14162969 -148436961 + L2 LINE L2 2205 2704 -610 2095 135 0 6 chrX 14162969 14163280 -148436650 - AluJb SINE Alu -3 309 1 2211 260 60 20 chrX 14163280 14163393 -148436537 + L2 LINE L2 2704 2811 -503 4442 84 0 5 chrX 14163625 14164219 -148435711 - LTR10C LTR ERV1 0 591 1 246 363 113 12 chrX 14165659 14165827 -148434103 - L3 LINE CR1 -10 1567 1383 421 257 125 35 chrX 14165835 14165979 -148433951 - MIR SINE MIR -41 221 65 365 284 205 5 chrX 14165992 14166182 -148433748 - L3 LINE CR1 -287 1290 1063 1084 253 177 25 chrX 14166308 14166923 -148433007 + L2 LINE L2 2602 3304 -9 181 344 100 69 chrX 14167020 14167213 -148432717 - L3 LINE CR1 -1105 472 262 2480 51 0 3 chrX 14167213 14167508 -148432422 + AluY SINE Alu 1 294 -17 181 344 100 69 chrX 14167508 14167663 -148432267 - L3 LINE CR1 -1315 262 113 543 313 78 5 chrX 14168512 14168704 -148431226 + MIR SINE MIR 15 220 -42 205 328 0 0 chrX 14168974 14169032 -148430898 + L3 LINE CR1 1519 1576 -1 2490 73 0 0 chrX 14169301 14169604 -148430326 + AluY SINE Alu 1 303 -8 212 0 0 35 chrX 14170893 14170922 -148429008 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 686 146 36 0 chrX 14171374 14171484 -148428446 - AluJ SINE Alu -16 296 183 846 156 0 0 chrX 14171491 14171619 -148428311 - AluJ SINE Alu -174 128 1 23 33 0 0 chrX 14171964 14171994 -148427936 + AT_rich Low_complexity Low_complexity 1 30 0 706 264 52 0 chrX 14173465 14173639 -148426291 + MIR SINE MIR 5 187 -75 2019 152 3 3 chrX 14173691 14173993 -148425937 - AluJb SINE Alu -10 302 1 255 272 74 0 chrX 14174069 14174150 -148425780 + L2 LINE L2 2716 2802 -512 1139 204 52 23 chrX 14174183 14174683 -148425247 - MLT1E LTR MaLR 0 593 1 227 283 43 33 chrX 14174725 14174817 -148425113 + MIR SINE MIR 104 196 -66 33 43 0 0 chrX 14175085 14175132 -148424798 + AT_rich Low_complexity Low_complexity 1 47 0 680 259 0 12 chrX 14175132 14175298 -148424632 - MIR SINE MIR -3 259 96 183 42 0 0 chrX 14175884 14175908 -148424022 + (GA)n Simple_repeat Simple_repeat 2 25 0 352 302 48 0 chrX 14176382 14176508 -148423422 + MER94 DNA DNA 1 132 -2 982 158 82 0 chrX 14176569 14176752 -148423178 + MER20 DNA MER1_type 1 198 -21 937 212 18 40 chrX 14176749 14176971 -148422959 - MER58A DNA MER1_type -7 217 1 * 393 315 151 25 chrX 14177029 14177267 -148422663 - L3 LINE CR1 -857 720 453 402 241 0 46 chrX 14177286 14177373 -148422557 - MER5B DNA MER1_type -95 83 1 192 291 161 31 chrX 14177373 14177586 -148422344 - L2 LINE L2 -385 2929 2688 422 169 11 0 chrX 14177672 14177761 -148422169 + CT-rich Low_complexity Low_complexity 3 92 0 471 188 86 26 chrX 14177829 14177946 -148421984 - MER5C DNA MER1_type -200 124 1 230 383 87 15 chrX 14177974 14178297 -148421633 + L2 LINE L2 2765 3109 -163 24 0 0 0 chrX 14180204 14180228 -148419702 + AT_rich Low_complexity Low_complexity 1 24 0 315 312 65 0 chrX 14180475 14180568 -148419362 + MIR SINE MIR 21 119 -89 3343 192 12 12 chrX 14180574 14181313 -148418617 + L1MA9 LINE L1 5536 6274 -38 314 260 130 0 chrX 14181346 14181446 -148418484 + MIR SINE MIR 132 244 -18 201 254 134 0 chrX 14181855 14181922 -148418008 - MIR3 SINE MIR -3 205 130 1790 198 78 19 chrX 14182302 14182766 -148417164 + L1ME1 LINE L1 5299 5789 -395 530 249 75 6 chrX 14182771 14182944 -148416986 + L1ME1 LINE L1 5981 6165 -1 1036 287 78 112 chrX 14184021 14184805 -148415125 - L3 LINE CR1 -26 1551 795 2007 107 19 0 chrX 14184829 14185100 -148414830 - AluSx SINE Alu -18 294 19 4090 221 51 15 chrX 14186093 14187353 -148412577 + L1PA15-16 LINE L1 2731 4034 -2815 687 160 15 0 chrX 14187353 14187484 -148412446 + L1PA16 LINE L1 6025 6157 -9 2305 80 0 36 chrX 14187504 14187806 -148412124 + AluSg SINE Alu 1 291 -19 314 230 81 0 chrX 14188223 14188297 -148411633 - MIR SINE MIR -99 163 84 4105 87 10 3 chrX 14188309 14188908 -148411022 - L1MA2 LINE L1 -237 6067 5465 448 277 133 4 chrX 14188908 14189179 -148410751 - L1ME4a LINE L1 -281 5840 5535 2094 135 39 27 chrX 14189231 14189645 -148410285 - L1MA7 LINE L1 0 6291 5873 406 276 54 23 chrX 14190550 14190688 -148409242 + MIR SINE MIR 17 175 -66 1041 221 140 17 chrX 14190692 14191050 -148408880 - LTR16A1 LTR ERVL -1 456 55 1058 180 95 0 chrX 14191099 14191299 -148408631 - MER58A DNA MER1_type -3 221 3 1620 135 36 7 chrX 14191466 14191740 -148408190 + MER4C LTR ERV1 184 465 0 468 319 121 29 chrX 14191889 14192237 -148407693 + L2 LINE L2 1875 2254 -1060 221 358 75 8 chrX 14192533 14192667 -148407263 + L2 LINE L2 3171 3313 0 226 306 167 9 chrX 14193223 14193331 -148406599 - MIR3 SINE MIR -33 175 51 310 284 42 0 chrX 14193387 14193482 -148406448 - MIR SINE MIR -65 143 45 23 0 0 0 chrX 14194152 14194175 -148405755 + AT_rich Low_complexity Low_complexity 1 23 0 592 90 11 0 chrX 14194232 14194321 -148405609 + L1PA13 LINE L1 6061 6150 -13 391 283 97 0 chrX 14194479 14194592 -148405338 - L2 LINE L2 -1 3312 3189 267 342 108 0 chrX 14194823 14194934 -148404996 - L2 LINE L2 0 3272 3150 261 301 12 12 chrX 14196055 14196138 -148403792 + L2 LINE L2 3231 3313 0 206 227 0 15 chrX 14196144 14196210 -148403720 + GA-rich Low_complexity Low_complexity 4 68 0 425 296 36 106 chrX 14196613 14196914 -148403016 - L2 LINE L2 -1 3271 2992 34 0 0 0 chrX 14197124 14197158 -148402772 + AT_rich Low_complexity Low_complexity 1 34 0 2176 125 14 0 chrX 14197227 14197523 -148402407 + AluSx SINE Alu 1 300 -12 1768 127 100 21 chrX 14197853 14198192 -148401738 - MER47A DNA MER2_type 0 366 1 280 265 0 0 chrX 14199839 14199941 -148399989 - HAL1 LINE L1 -121 2386 2285 378 335 104 14 chrX 14199959 14200180 -148399750 - HAL1 LINE L1 -293 2214 1974 393 225 36 9 chrX 14200263 14200374 -148399556 - HAL1 LINE L1 -723 1784 1671 349 304 29 0 chrX 14200609 14200711 -148399219 - HAL1 LINE L1 -2402 105 1 562 252 161 0 chrX 14201206 14201361 -148398569 + MER5A DNA MER1_type 9 188 -1 936 141 11 54 chrX 14201370 14201555 -148398375 - MER5B DNA MER1_type 0 178 2 22 35 0 0 chrX 14202413 14202442 -148397488 + AT_rich Low_complexity Low_complexity 1 29 0 835 251 11 0 chrX 14202958 14203145 -148396785 + MER5A DNA MER1_type 1 189 0 1067 225 35 86 chrX 14203615 14204225 -148395705 - L2 LINE L2 -70 3243 2678 323 253 0 0 chrX 14204871 14204946 -148394984 - MIR SINE MIR 0 262 188 1289 269 42 3 chrX 14205031 14205388 -148394542 - LTR16C LTR ERVL -117 374 4 1294 99 0 0 chrX 14206571 14206733 -148393197 - AluSg/x SINE Alu -16 296 135 1887 148 11 0 chrX 14207507 14207813 -148392117 - AluJo SINE Alu 0 309 1 369 0 0 0 chrX 14208327 14208368 -148391562 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrX 14208391 14208423 -148391507 + (TA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chrX 14208561 14208585 -148391345 + AT_rich Low_complexity Low_complexity 1 24 0 908 294 44 17 chrX 14208608 14209019 -148390911 - L1MC4a LINE L1 -1932 5876 5455 208 271 21 0 chrX 14209986 14210034 -148389896 + MIR SINE MIR 206 254 -8 1480 145 98 50 chrX 14211126 14211168 -148388762 + MER58B DNA MER1_type 9 48 -2372 2070 99 3 7 chrX 14211168 14211490 -148388440 - AluSx SINE Alu 0 321 1 1480 145 98 50 chrX 14211490 14211764 -148388166 + MER58B DNA MER1_type 48 341 0 316 133 50 0 chrX 14213380 14213440 -148386490 - MER67C LTR ERV1 -228 482 420 1906 195 24 7 chrX 14213702 14214127 -148385803 + LTR56 LTR ERV1 1 432 -13 23 33 0 0 chrX 14214213 14214243 -148385687 + AT_rich Low_complexity Low_complexity 1 30 0 502 323 32 0 chrX 14214373 14214528 -148385402 + MER5A DNA MER1_type 25 184 -5 21 0 0 0 chrX 14215062 14215083 -148384847 + AT_rich Low_complexity Low_complexity 1 21 0 442 310 63 52 chrX 14215092 14215570 -148384360 + L1MC4a LINE L1 4018 4489 -1657 2106 156 0 0 chrX 14215570 14215877 -148384053 + AluSx SINE Alu 1 307 -5 442 310 63 52 chrX 14215877 14216548 -148383382 + L1MC4a LINE L1 4489 5180 -966 885 207 104 28 chrX 14216630 14216881 -148383049 + L1MC4a LINE L1 5305 5574 -2234 399 196 0 54 chrX 14216889 14217001 -148382929 + L1MC4a LINE L1 5908 6013 -1795 205 300 100 0 chrX 14219004 14219074 -148380856 + MER91B DNA MER1_type 4 80 -110 271 320 29 48 chrX 14219422 14219525 -148380405 + L2 LINE L2 3152 3252 -20 24 0 0 0 chrX 14219525 14219549 -148380381 + AT_rich Low_complexity Low_complexity 1 24 0 687 271 116 14 chrX 14219585 14219792 -148380138 - MIR SINE MIR -28 234 7 243 299 179 52 chrX 14219910 14220253 -148379677 + L2 LINE L2 2716 3096 -176 398 71 0 0 chrX 14220254 14220310 -148379620 - MADE1 DNA Mariner 0 80 25 315 0 0 0 chrX 14220366 14220401 -148379529 + (TG)n Simple_repeat Simple_repeat 2 36 0 632 274 119 5 chrX 14220675 14220894 -148379036 + MIR SINE MIR 6 249 -13 641 285 92 18 chrX 14221924 14222152 -148377778 + MIR SINE MIR 10 254 -8 624 281 112 20 chrX 14222279 14222574 -148377356 - MARNA DNA Mariner -71 515 194 2110 133 0 0 chrX 14222598 14222891 -148377039 - AluSx SINE Alu -19 293 1 1125 178 62 0 chrX 14223343 14223551 -148376379 - MER58A DNA MER1_type -1 223 3 493 182 11 11 chrX 14223808 14223896 -148376034 - FLAM_A SINE Alu -21 121 34 369 237 126 65 chrX 14224463 14224835 -148375095 - L1ME4a LINE L1 -31 6090 5696 325 286 96 31 chrX 14224839 14225098 -148374832 + L1MC4a LINE L1 5647 5883 -238 4463 131 7 6 chrX 14225227 14225937 -148373993 + MER50 LTR ERV1 1 711 -23 253 301 124 35 chrX 14227016 14227129 -148372801 + L2 LINE L2 3134 3256 -16 22 0 0 0 chrX 14227457 14227479 -148372451 + AT_rich Low_complexity Low_complexity 1 22 0 1019 40 0 0 chrX 14227511 14227636 -148372294 + L1MA1 LINE L1 6178 6302 0 31 82 0 0 chrX 14229556 14229629 -148370301 + AT_rich Low_complexity Low_complexity 1 73 0 6162 45 11 2 chrX 14230483 14231283 -148368647 - L1PA7 LINE L1 -2 6152 5346 30 45 0 0 chrX 14231404 14231448 -148368482 + AT_rich Low_complexity Low_complexity 1 44 0 692 193 7 21 chrX 14231991 14232131 -148367799 - MER45A DNA AcHobo 0 178 41 835 261 37 14 chrX 14232307 14232522 -148367408 + MIR SINE MIR 6 225 -37 558 153 81 54 chrX 14232671 14232782 -148367148 + MER81 DNA DNA 1 114 0 661 125 17 0 chrX 14232832 14232952 -148366978 + GA-rich Low_complexity Low_complexity 1 122 0 1639 266 102 45 chrX 14233102 14233700 -148366230 + MER115 DNA AcHobo 61 692 -1 23 0 0 0 chrX 14234261 14234284 -148365646 + AT_rich Low_complexity Low_complexity 1 23 0 203 206 63 16 chrX 14234723 14234786 -148365144 + (CACAT)n Simple_repeat Simple_repeat 4 69 0 26 74 0 0 chrX 14235397 14235451 -148364479 + AT_rich Low_complexity Low_complexity 1 54 0 602 332 100 7 chrX 14235856 14236287 -148363643 + L1MC4a LINE L1 5459 5929 -1879 25 31 0 0 chrX 14236406 14236438 -148363492 + AT_rich Low_complexity Low_complexity 1 32 0 1704 137 0 10 chrX 14237589 14237882 -148362048 + L1PA13 LINE L1 5874 6163 0 25 75 0 0 chrX 14238348 14238401 -148361529 + AT_rich Low_complexity Low_complexity 1 53 0 195 270 88 88 chrX 14238589 14238726 -148361204 + MIR SINE MIR 47 183 -79 745 222 84 15 chrX 14238923 14239126 -148360804 - MIR SINE MIR -14 248 32 225 217 22 0 chrX 14239367 14239413 -148360517 - L2 LINE L2 -10 3262 3216 358 267 121 35 chrX 14240467 14240868 -148359062 + MLT1H1 LTR MaLR 108 549 0 362 276 89 16 chrX 14241193 14241316 -148358614 - MER5B DNA MER1_type 0 178 47 463 333 7 33 chrX 14241907 14242060 -148357870 + MIR3 SINE MIR 43 191 -17 1935 161 10 0 chrX 14242385 14242689 -148357241 - AluJb SINE Alu -5 307 1 229 288 0 17 chrX 14243589 14243648 -148356282 - L3 LINE CR1 -2 1575 1518 229 122 0 0 chrX 14243726 14243767 -148356163 - L1MA3 LINE L1 -1 6304 6264 387 0 0 0 chrX 14243783 14243826 -148356104 + (TA)n Simple_repeat Simple_repeat 1 43 0 218 37 0 0 chrX 14243827 14243854 -148356076 + (TG)n Simple_repeat Simple_repeat 2 28 0 643 37 0 0 chrX 14243856 14243938 -148355992 - AluY SINE Alu -6 304 223 1233 89 6 0 chrX 14243938 14244117 -148355813 - L1MA1 LINE L1 -18 6284 6105 2524 76 0 0 chrX 14244188 14244489 -148355441 + AluSq SINE Alu 1 301 -12 630 121 0 0 chrX 14246643 14246742 -148353188 + L1MB2 LINE L1 6069 6167 -4 381 176 0 0 chrX 14248821 14248895 -148351035 + GA-rich Low_complexity Low_complexity 4 77 0 2016 226 65 29 chrX 14248895 14249168 -148350762 + L1ME3A LINE L1 5496 5758 -412 1963 203 77 29 chrX 14249168 14249650 -148350280 + MLT1D LTR MaLR 1 505 0 2016 226 65 29 chrX 14249650 14250023 -148349907 + L1ME3A LINE L1 5758 6165 -5 216 67 0 0 chrX 14250030 14250060 -148349870 + (TG)n Simple_repeat Simple_repeat 1 30 0 598 249 76 5 chrX 14250562 14250759 -148349171 - L1MB7 LINE L1 -47 6137 5927 1341 200 101 44 chrX 14250870 14251051 -148348879 - MLT1C LTR MaLR -7 460 291 2610 148 16 5 chrX 14251051 14251476 -148348454 + MSTB1 LTR MaLR 1 430 -2 1341 200 101 44 chrX 14251476 14251729 -148348201 - MLT1C LTR MaLR -176 291 1 23 0 0 0 chrX 14254313 14254336 -148345594 + AT_rich Low_complexity Low_complexity 1 23 0 892 235 34 133 chrX 14255387 14255742 -148344188 - L1MC4 LINE L1 0 8042 7756 2983 43 0 5 chrX 14255742 14256111 -148343819 - L1PA8 LINE L1 -2 6170 5804 892 235 34 133 chrX 14256111 14256291 -148343639 - L1MC4 LINE L1 -286 7756 7560 311 250 102 37 chrX 14256604 14256712 -148343218 + MIR SINE MIR 140 254 -8 495 250 38 25 chrX 14257111 14257271 -148342659 - MIR SINE MIR -55 207 46 250 250 14 0 chrX 14257713 14257785 -148342145 + MLT1L LTR MaLR 199 271 -344 495 228 53 53 chrX 14257804 14257993 -148341937 + MLT1J LTR MaLR 323 511 0 207 265 39 36 chrX 14258343 14258444 -148341486 - MIR SINE MIR -58 150 80 240 35 0 0 chrX 14258693 14258722 -148341208 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 325 296 23 30 chrX 14259039 14259171 -148340759 + MIR SINE MIR 124 254 -8 512 354 51 16 chrX 14259950 14260264 -148339666 - L3 LINE CR1 -45 1532 1208 234 309 69 26 chrX 14260289 14260469 -148339461 - MIR SINE MIR -9 253 9 872 145 0 0 chrX 14260556 14260680 -148339250 - FLAM_C SINE Alu -19 124 1 503 326 82 66 chrX 14260955 14261396 -148338534 + L2 LINE L2 2823 3270 -2 1039 173 5 34 chrX 14262147 14262355 -148337575 - MER20 DNA MER1_type -17 202 1 1267 126 165 54 chrX 14264875 14265136 -148334794 + AluJo SINE Alu 1 290 -12 23 0 0 0 chrX 14265213 14265236 -148334694 + AT_rich Low_complexity Low_complexity 1 23 0 286 316 140 24 chrX 14266665 14266829 -148333101 + MIR SINE MIR 59 240 -22 191 238 48 95 chrX 14267020 14267125 -148332805 - MIR SINE MIR -5 257 158 474 286 75 0 chrX 14267187 14267348 -148332582 - MIR SINE MIR -83 179 7 204 252 191 38 chrX 14267421 14267552 -148332378 - MIR3 SINE MIR -9 199 49 393 246 97 30 chrX 14268847 14268981 -148330949 + MIR SINE MIR 48 190 -72 397 243 230 14 chrX 14269348 14269496 -148330434 + MER5A DNA MER1_type 9 188 -1 394 250 29 64 chrX 14269900 14270072 -148329858 + MER69A DNA AcHobo 2 167 -10 344 336 0 22 chrX 14271088 14271222 -148328708 - L2 LINE L2 0 3313 3183 2627 107 3 8 chrX 14271634 14272000 -148327930 + THE1B LTR MaLR 1 364 0 684 93 0 0 chrX 14272449 14272546 -148327384 + (GA)n Simple_repeat Simple_repeat 2 98 0 1911 261 106 30 chrX 14272619 14273571 -148326359 + L2 LINE L2 2197 3214 -99 239 57 29 0 chrX 14274008 14274043 -148325887 + MER58A DNA MER1_type 49 84 -23 647 174 16 0 chrX 14274099 14274220 -148325710 + MER58A DNA MER1_type 99 221 -3 1999 162 6 16 chrX 14274991 14275355 -148324575 + MLT1A1 LTR MaLR 6 365 0 3432 162 35 40 chrX 14275366 14275886 -148324044 - MLT-int LTR MaLR -1013 722 206 2097 148 3 0 chrX 14275886 14276197 -148323733 + AluJb SINE Alu 1 312 0 3432 162 35 40 chrX 14276197 14276399 -148323531 - MLT-int LTR MaLR -1529 206 4 194 255 20 0 chrX 14277257 14277308 -148322622 - MIR SINE MIR -116 146 95 211 111 22 22 chrX 14277324 14277369 -148322561 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 1404 306 33 17 chrX 14277541 14278309 -148321621 + L1M4 LINE L1 3437 4216 -1930 486 254 97 53 chrX 14278718 14279174 -148320756 + L1M4 LINE L1 4213 4688 -1458 314 315 236 41 chrX 14279308 14279915 -148320015 + L2 LINE L2 2323 3060 -212 1085 133 9 57 chrX 14280146 14280356 -148319574 - THE1B LTR MaLR 0 364 165 2450 65 3 7 chrX 14281078 14281385 -148318545 - AluSp SINE Alu -7 306 1 222 260 0 0 chrX 14281618 14281668 -148318262 + L2 LINE L2 2271 2320 -994 1316 167 42 90 chrX 14282205 14282559 -148317371 + MER58B DNA MER1_type 1 337 -4 514 276 9 74 chrX 14282889 14283106 -148316824 - MIR SINE MIR -25 237 35 601 223 128 0 chrX 14284005 14284153 -148315777 - MIR SINE MIR -81 181 15 372 316 126 50 chrX 14284175 14284532 -148315398 + L3 LINE CR1 1180 1563 -14 1992 139 5 62 chrX 14284773 14285141 -148314789 - MER7A DNA MER2_type -1 345 1 195 333 71 0 chrX 14285149 14285248 -148314682 + MIR SINE MIR 157 262 0 2584 97 39 12 chrX 14286516 14286928 -148313002 - L1MA8 LINE L1 -5 6286 5864 1596 173 50 91 chrX 14287282 14287695 -148312235 - Charlie4a DNA MER1_type -1459 502 111 640 115 35 0 chrX 14287695 14287808 -148312122 + L1MB3 LINE L1 6067 6183 0 1596 173 50 91 chrX 14287808 14287890 -148312040 - Charlie4a DNA MER1_type -1850 111 27 309 265 50 36 chrX 14288078 14288297 -148311633 - L1ME4a LINE L1 -178 5943 5722 2547 64 6 0 chrX 14288411 14288722 -148311208 - AluSp SINE Alu 0 313 1 795 208 69 24 chrX 14289153 14289441 -148310489 - L1MC5 LINE L1 -30 7931 7631 525 268 93 80 chrX 14289787 14290175 -148309755 - MLT1J LTR MaLR -2 509 117 748 71 390 7 chrX 14290405 14290546 -148309384 - AluSg/x SINE Alu -14 295 101 262 0 0 79 chrX 14290646 14290684 -148309246 - THE1C LTR MaLR -340 35 1 24 32 0 0 chrX 14291162 14291193 -148308737 + AT_rich Low_complexity Low_complexity 1 31 0 318 224 15 0 chrX 14291256 14291323 -148308607 + AluSp/q SINE Alu 235 302 -1 21 57 0 0 chrX 14292576 14292611 -148307319 + AT_rich Low_complexity Low_complexity 1 35 0 2797 223 23 7 chrX 14292766 14293380 -148306550 - MER82 DNA MER2_type -29 624 1 28 29 0 0 chrX 14293708 14293743 -148306187 + AT_rich Low_complexity Low_complexity 1 35 0 436 295 25 30 chrX 14293761 14293961 -148305969 - L1ME4a LINE L1 -2240 5568 5370 278 241 196 0 chrX 14294103 14294215 -148305715 + L3 LINE CR1 1279 1412 -165 26 30 0 0 chrX 14294323 14294356 -148305574 + AT_rich Low_complexity Low_complexity 1 33 0 202 311 379 0 chrX 14294480 14294612 -148305318 + MER5A DNA MER1_type 8 189 0 402 256 0 0 chrX 14295119 14295205 -148304725 - MER81 DNA DNA -26 88 3 410 283 186 41 chrX 14295611 14295880 -148304050 + L1ME LINE L1 3912 4219 -1927 2582 132 35 14 chrX 14296204 14296629 -148303301 + MER57B LTR ERV1 1 434 0 329 311 36 68 chrX 14296681 14296812 -148303118 + L1ME LINE L1 5601 5724 -397 2317 82 3 0 chrX 14296812 14297129 -148302801 + AluSg SINE Alu 1 310 0 329 311 36 68 chrX 14297129 14297219 -148302711 + L1ME LINE L1 5724 5815 -306 997 160 4 67 chrX 14297282 14297507 -148302423 - MER20 DNA MER1_type -5 214 4 1506 189 42 34 chrX 14297892 14298274 -148301656 - L1MB7 LINE L1 -72 6112 5728 184 275 0 0 chrX 14298476 14298516 -148301414 - L3 LINE CR1 -289 1288 1249 228 169 102 0 chrX 14299324 14299383 -148300547 + MER20 DNA MER1_type 1 65 -154 * 243 114 0 0 chrX 14299375 14299410 -148300520 - U2 snRNA snRNA -152 36 2 735 116 62 0 chrX 14299412 14299541 -148300389 + MER20 DNA MER1_type 41 177 -42 2558 77 0 3 chrX 14299765 14300078 -148299852 + AluSq SINE Alu 2 313 0 423 268 73 0 chrX 14300403 14300526 -148299404 - MIR SINE MIR -76 186 55 21 0 0 0 chrX 14301382 14301403 -148298527 + AT_rich Low_complexity Low_complexity 1 21 0 1368 201 109 6 chrX 14301533 14301882 -148298048 + L1MD3 LINE L1 7606 7990 -5 23 68 0 0 chrX 14302099 14302143 -148297787 + AT_rich Low_complexity Low_complexity 1 44 0 775 256 111 49 chrX 14303578 14303922 -148296008 - L2 LINE L2 0 3313 2949 249 335 91 11 chrX 14304004 14304180 -148295750 - MIR SINE MIR -48 214 25 198 0 0 0 chrX 14304638 14304660 -148295270 + (A)n Simple_repeat Simple_repeat 1 22 0 350 269 79 97 chrX 14306325 14306768 -148293162 - L1MC4a LINE L1 -53 6068 5634 383 281 121 25 chrX 14306774 14306973 -148292957 - L1MC4a LINE L1 -1128 5018 4801 487 288 48 0 chrX 14307698 14307823 -148292107 + L2 LINE L2 3180 3310 -3 22 0 0 0 chrX 14307845 14307867 -148292063 + AT_rich Low_complexity Low_complexity 1 22 0 993 165 0 100 chrX 14308699 14308853 -148291077 + MER3 DNA MER1_type 3 128 -81 2401 92 0 6 chrX 14308853 14309168 -148290762 - AluSq SINE Alu 0 313 1 993 165 0 100 chrX 14309168 14309243 -148290687 + MER3 DNA MER1_type 128 209 0 316 286 143 30 chrX 14309547 14309680 -148290250 + MER91A DNA MER1_type 47 194 -2 305 271 68 8 chrX 14309816 14309831 -148290099 - L1ME1 LINE L1 -5 6161 6147 3851 189 77 10 chrX 14309831 14310742 -148289188 - L1MA6 LINE L1 -12 6288 5317 557 204 7 27 chrX 14310752 14310899 -148289031 + L1MA6 LINE L1 5193 5336 -810 449 307 88 61 chrX 14311069 14311476 -148288454 + L2 LINE L2 1575 1992 -1322 1776 169 7 0 chrX 14312023 14312307 -148287623 - AluJo SINE Alu -25 287 2 260 296 38 53 chrX 14312321 14312453 -148287477 - MIR SINE MIR -105 157 28 1057 187 84 0 chrX 14312668 14312871 -148287059 - MER58A DNA MER1_type -3 221 2 435 357 5 10 chrX 14312954 14313153 -148286777 + L2 LINE L2 2880 3077 -195 880 270 121 14 chrX 14313358 14313714 -148286216 + LTR16C LTR ERVL 98 491 0 973 267 58 31 chrX 14313967 14314293 -148285637 + LTR16A LTR ERVL 53 387 -70 522 283 61 54 chrX 14315537 14315816 -148284114 - LTR16A1 LTR ERVL -2 455 175 207 88 0 0 chrX 14316160 14316194 -148283736 + (T)n Simple_repeat Simple_repeat 1 34 0 808 244 139 4 chrX 14317147 14317377 -148282553 + MIR SINE MIR 2 262 0 683 233 157 0 chrX 14317806 14317965 -148281965 - MER5A DNA MER1_type 0 189 6 254 235 0 106 chrX 14318061 14318146 -148281784 + MIR3 SINE MIR 85 160 -48 797 236 74 9 chrX 14318563 14318792 -148281138 + MIR SINE MIR 16 259 -3 282 316 13 0 chrX 14318966 14319042 -148280888 + L2 LINE L2 3196 3272 0 313 299 74 58 chrX 14320520 14320982 -148278948 + L1MC4a LINE L1 6058 6526 -1282 379 310 62 16 chrX 14321656 14321785 -148278145 - L2 LINE L2 -22 3250 3116 2382 61 0 35 chrX 14323051 14323364 -148276566 + AluY SINE Alu 1 302 -9 238 100 0 0 chrX 14323562 14323602 -148276328 + L1MB7 LINE L1 6135 6174 -10 214 289 40 0 chrX 14323815 14323891 -148276039 - L2 LINE L2 -9 3263 3185 1170 99 37 11 chrX 14324107 14324298 -148275632 - MER30 DNA MER1_type -34 196 1 2661 45 3 0 chrX 14324541 14324851 -148275079 + AluY SINE Alu 1 311 0 1645 63 0 9 chrX 14325121 14325342 -148274588 - L1PA6 LINE L1 -2 6152 5934 14396 106 22 56 chrX 14326149 14328652 -148271278 - Tigger1 DNA MER2_type 0 2418 1 343 329 78 17 chrX 14329928 14330341 -148269589 + L1MC/D LINE L1 5373 5810 -1998 210 37 0 0 chrX 14330658 14330685 -148269245 + (GA)n Simple_repeat Simple_repeat 2 28 0 393 250 201 14 chrX 14330848 14330992 -148268938 + MIR SINE MIR 20 190 -72 200 179 0 26 chrX 14330991 14331030 -148268900 + L2 LINE L2 3264 3301 -12 * 223 279 0 51 chrX 14331133 14331174 -148268756 - MIR SINE MIR -8 254 217 1481 154 59 0 chrX 14331174 14331480 -148268450 - MER33 DNA MER1_type 0 324 1 223 279 0 51 chrX 14331480 14331517 -148268413 - MIR SINE MIR -45 217 180 661 187 32 0 chrX 14332105 14332228 -148267702 - MIR SINE MIR -128 134 8 1525 225 25 83 chrX 14332641 14333206 -148266724 - LTR55 LTR ERV -16 532 1 523 318 36 5 chrX 14333382 14333574 -148266356 - MIR3 SINE MIR -8 200 3 2004 132 54 0 chrX 14335393 14335736 -148264194 - AluSx SINE Alu 0 359 1 560 131 16 55 chrX 14336170 14336353 -148263577 + CT-rich Low_complexity Low_complexity 4 179 0 658 99 57 36 chrX 14336390 14337078 -148262852 + CT-rich Low_complexity Low_complexity 1 701 0 1450 324 134 36 chrX 14337126 14338321 -148261609 + L2 LINE L2 1978 3313 0 315 221 15 0 chrX 14338396 14338464 -148261466 + MIR SINE MIR 191 259 -3 39 38 0 0 chrX 14338466 14338519 -148261411 + AT_rich Low_complexity Low_complexity 1 53 0 326 266 44 26 chrX 14339187 14339300 -148260630 + L1ME LINE L1 5653 5767 -354 2331 84 0 0 chrX 14340662 14340960 -148258970 - AluY SINE Alu -13 298 1 192 242 84 42 chrX 14341600 14341695 -148258235 - MIR3 SINE MIR -8 200 102 937 119 0 8 chrX 14341727 14341861 -148258069 + FLAM_C SINE Alu 1 133 -10 248 118 0 39 chrX 14341867 14341918 -148258012 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 253 253 101 0 chrX 14342665 14342744 -148257186 + L1MC4 LINE L1 6614 6700 -1342 258 32 0 0 chrX 14342815 14342846 -148257084 + (TG)n Simple_repeat Simple_repeat 2 32 0 477 214 18 18 chrX 14342941 14343053 -148256877 - L2 LINE L2 -6 3307 3196 2695 224 56 8 chrX 14343156 14343818 -148256112 - L1ME3A LINE L1 -7 6163 5470 2453 71 0 3 chrX 14344826 14345136 -148254794 + AluSc SINE Alu 1 309 0 322 262 125 42 chrX 14345148 14345316 -148254614 - MIR3 SINE MIR -7 201 20 1772 163 0 20 chrX 14345525 14345820 -148254110 - AluJo SINE Alu -21 291 3 12101 147 33 16 chrX 14345835 14346908 -148253022 - L1MA4 LINE L1 -3 6297 5244 2275 108 0 0 chrX 14346908 14347204 -148252726 - AluSx SINE Alu -16 296 1 12101 147 33 16 chrX 14347204 14349274 -148250656 - L1MA4 LINE L1 -1056 5244 3101 911 174 0 13 chrX 14349679 14349834 -148250096 - FRAM SINE Alu -12 164 12 474 328 100 26 chrX 14349845 14350156 -148249774 - L1MC/D LINE L1 -1989 5819 5486 2202 89 7 0 chrX 14350305 14350619 -148249311 - AluSx SINE Alu 0 316 1 2423 81 0 0 chrX 14350627 14350922 -148249008 - AluSq SINE Alu -18 295 1 245 162 15 0 chrX 14351078 14351146 -148248784 + CT-rich Low_complexity Low_complexity 2 70 0 405 0 0 0 chrX 14351147 14351192 -148248738 + (CA)n Simple_repeat Simple_repeat 2 46 0 2531 181 24 18 chrX 14352511 14353013 -148246917 + MLT1D LTR MaLR 1 505 0 1268 203 195 48 chrX 14353154 14353291 -148246639 - MLT1E LTR MaLR 0 593 477 1795 149 3 57 chrX 14353291 14353606 -148246324 + AluSx SINE Alu 6 303 -9 1268 203 195 48 chrX 14353606 14353985 -148245945 - MLT1E LTR MaLR -116 477 1 391 162 90 9 chrX 14354429 14354540 -148245390 - L1MC/D LINE L1 -806 5340 5221 1547 120 19 0 chrX 14354765 14355032 -148244898 - L1MA8 LINE L1 -3 6288 6017 872 250 19 29 chrX 14355185 14355424 -148244506 - MIR SINE MIR -1 261 25 506 178 178 0 chrX 14355729 14355830 -148244100 + FLAM_C SINE Alu 1 119 -14 2670 78 17 35 chrX 14407381 14407803 -148192127 + L1MA1 LINE L1 5889 6302 0 934 150 69 0 chrX 14407960 14408120 -148191810 - AluJo SINE Alu -109 203 33 1858 176 10 22 chrX 14408827 14409140 -148190790 + AluJo SINE Alu 1 309 -3 2024 98 33 0 chrX 14409147 14409454 -148190476 + AluY SINE Alu 1 316 0 746 226 92 26 chrX 14410059 14410254 -148189676 - MER63A DNA MER1_type -1 209 2 1488 185 150 14 chrX 14410264 14410697 -148189233 - Charlie4a DNA MER1_type 0 508 17 369 0 0 0 chrX 14411473 14411514 -148188416 + (CA)n Simple_repeat Simple_repeat 1 41 0 193 300 33 11 chrX 14411649 14411739 -148188191 + L2 LINE L2 2946 3037 -276 1219 46 13 0 chrX 14411932 14412085 -148187845 - L1PA5 LINE L1 -6 6148 5994 211 189 19 19 chrX 14412255 14412308 -148187622 + L2 LINE L2 3261 3313 0 2465 57 3 0 chrX 14413144 14413443 -148186487 + AluY SINE Alu 1 300 -11 260 174 159 0 chrX 14413961 14414030 -148185900 + MER116 DNA Mariner 1 80 0 478 300 33 7 chrX 14414481 14414631 -148185299 + MIR SINE MIR 51 204 -58 767 193 171 0 chrX 14414658 14414839 -148185091 + MER58A DNA MER1_type 3 214 -10 1819 89 4 4 chrX 14416105 14416364 -148183566 - Charlie3 DNA MER1_type -8 2702 2444 * 2424 145 8 0 chrX 14416362 14416734 -148183196 - MER1A DNA MER1_type -154 375 1 326 146 64 0 chrX 14417926 14417997 -148181933 - MLT1H LTR MaLR -3 552 477 227 216 135 27 chrX 14418031 14418179 -148181751 - MLT1H LTR MaLR -204 391 228 287 263 12 0 chrX 14418190 14418270 -148181660 - MLT2E LTR ERVL -88 540 460 482 277 71 7 chrX 14418325 14418480 -148181450 - MLT2E LTR ERVL -306 322 158 363 244 67 37 chrX 14418807 14418942 -148180988 - L1ME4a LINE L1 -1 6120 5982 469 314 30 17 chrX 14418993 14419356 -148180574 - L1ME4a LINE L1 -256 5865 5461 308 277 48 0 chrX 14421490 14421573 -148178357 - MIR3 SINE MIR -9 199 113 681 264 109 5 chrX 14421606 14421807 -148178123 - MIR SINE MIR -21 241 20 267 239 0 42 chrX 14421863 14421934 -148177996 - MIR SINE MIR -125 83 16 775 200 144 0 chrX 14422213 14422373 -148177557 + MER5A DNA MER1_type 4 186 -3 225 378 0 0 chrX 14422655 14422737 -148177193 + L2 LINE L2 2234 2315 -999 2499 66 0 25 chrX 14422787 14423107 -148176823 + AluSx SINE Alu 1 312 0 207 356 113 32 chrX 14423131 14423502 -148176428 + L2 LINE L2 2529 2929 -385 291 260 0 106 chrX 14423668 14423791 -148176139 + L2 LINE L2 3204 3313 0 1139 226 5 0 chrX 14424304 14424525 -148175405 + MER58A DNA MER1_type 2 223 -1 387 151 14 14 chrX 14427150 14427223 -148172707 + MER106A DNA MER1_type 1 73 -163 2132 107 0 0 chrX 14427837 14428145 -148171785 - AluY SINE Alu 0 308 1 27 73 0 0 chrX 14428632 14428687 -148171243 + AT_rich Low_complexity Low_complexity 1 55 0 391 280 42 8 chrX 14429284 14429402 -148170528 + MER91C DNA MER1_type 4 125 -15 501 282 155 82 chrX 14430826 14431277 -148168653 - L2 LINE L2 0 3313 2830 725 213 101 19 chrX 14431277 14431484 -148168446 - MER58 DNA MER1_type -107 234 11 479 294 23 55 chrX 14431504 14431722 -148168208 + L2 LINE L2 3101 3311 -2 1107 272 73 8 chrX 14432210 14432581 -148167349 - MLT1I LTR MaLR -8 401 7 256 174 0 22 chrX 14432944 14432990 -148166940 - L2 LINE L2 -4 3309 3265 292 171 38 124 chrX 14433694 14433799 -148166131 - MLT1H LTR MaLR 0 549 454 273 151 0 0 chrX 14434434 14434487 -148165443 + (CA)n Simple_repeat Simple_repeat 1 53 0 21 36 0 0 chrX 14435021 14435049 -148164881 + AT_rich Low_complexity Low_complexity 1 28 0 204 231 0 0 chrX 14435165 14435217 -148164713 + GA-rich Low_complexity Low_complexity 1 52 0 364 343 66 6 chrX 14435219 14435385 -148164545 - MIR SINE MIR -9 253 78 189 107 0 0 chrX 14435385 14435413 -148164517 + (A)n Simple_repeat Simple_repeat 1 28 0 1967 185 94 53 chrX 14435482 14436045 -148163885 - L1MD2 LINE L1 -221 6138 5553 280 224 0 0 chrX 14437517 14437575 -148162355 - L1MD3 LINE L1 -55 7940 7883 461 245 0 72 chrX 14437575 14437714 -148162216 + MER5B DNA MER1_type 39 167 -11 324 211 0 0 chrX 14439022 14439079 -148160851 + MER5A DNA MER1_type 7 63 -126 186 133 0 0 chrX 14439376 14439406 -148160524 + (A)n Simple_repeat Simple_repeat 1 30 0 258 211 367 11 chrX 14439406 14439496 -148160434 + MER5A DNA MER1_type 61 182 -7 227 341 49 12 chrX 14439639 14439721 -148160209 - L2 LINE L2 -87 3185 3101 471 267 181 95 chrX 14439882 14440208 -148159722 - L2 LINE L2 0 3272 2919 288 174 58 9 chrX 14440431 14440528 -148159402 - L1MB8 LINE L1 -168 6010 5949 * 854 239 30 9 chrX 14440507 14440737 -148159193 - L1MB8 LINE L1 -499 5667 5433 1794 169 16 22 chrX 14442009 14442041 -148157889 - AluJb SINE Alu 0 312 281 1162 61 11 17 chrX 14442041 14442221 -148157709 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1794 169 16 22 chrX 14442221 14442502 -148157428 - AluJb SINE Alu -31 281 1 186 368 0 0 chrX 14442732 14442789 -148157141 - L3 LINE CR1 -3 1574 1518 2228 70 0 14 chrX 14443866 14444180 -148155750 + AluY SINE Alu 1 310 0 230 301 78 34 chrX 14444222 14444518 -148155412 + L1MEd LINE L1 897 1205 -4914 792 206 0 29 chrX 14444552 14444722 -148155208 - MER58A DNA MER1_type 0 165 1 2029 134 0 0 chrX 14444743 14445041 -148154889 + AluSx SINE Alu 1 298 -14 902 249 65 26 chrX 14446153 14446494 -148153436 - MLT1C LTR MaLR -4 463 110 2176 116 7 0 chrX 14497841 14498144 -148101786 - AluSx SINE Alu -7 305 1 2049 112 0 20 chrX 14498157 14498452 -148101478 - AluSx SINE Alu 0 312 24 25 83 0 0 chrX 14498459 14498519 -148101411 + AT_rich Low_complexity Low_complexity 1 60 0 2222 95 0 0 chrX 14499843 14500157 -148099773 - AluSx SINE Alu 0 314 1 436 303 81 29 chrX 14500546 14500902 -148099028 - MLT1K LTR MaLR -166 422 1 2281 105 0 3 chrX 14501001 14501297 -148098633 - AluSq SINE Alu -18 295 1 2341 92 0 0 chrX 14502274 14502567 -148097363 + AluSg SINE Alu 1 293 -17 278 273 130 93 chrX 14502995 14503211 -148096719 - MIR SINE MIR -15 247 24 2552 70 0 0 chrX 14503213 14503514 -148096416 - AluSc SINE Alu -8 301 1 689 216 144 12 chrX 14503686 14503853 -148096077 - MER5A DNA MER1_type 0 189 1 276 30 0 0 chrX 14503859 14503892 -148096038 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2359 60 0 3 chrX 14503894 14504177 -148095753 - AluSq SINE Alu -31 282 1 2216 113 7 0 chrX 14504460 14504762 -148095168 + AluSg1 SINE Alu 1 304 -5 2638 48 0 0 chrX 14505617 14505928 -148094002 - AluY SINE Alu 0 311 1 372 133 0 0 chrX 14506872 14506932 -148092998 + (TA)n Simple_repeat Simple_repeat 1 60 0 209 132 0 19 chrX 14507055 14507108 -148092822 + (TA)n Simple_repeat Simple_repeat 1 52 0 284 272 25 0 chrX 14507487 14507568 -148092362 + CT-rich Low_complexity Low_complexity 3 85 0 929 151 8 155 chrX 14507723 14507903 -148092027 + MER20 DNA MER1_type 4 138 -81 2355 103 0 0 chrX 14507903 14508213 -148091717 + AluSg SINE Alu 1 310 0 929 151 8 155 chrX 14508213 14508284 -148091646 + MER20 DNA MER1_type 138 218 -1 689 221 21 0 chrX 14508293 14508433 -148091497 + MER33 DNA MER1_type 1 143 -181 501 191 0 21 chrX 14508440 14508534 -148091396 - AluSp/q SINE Alu -11 302 211 766 188 14 0 chrX 14508534 14508672 -148091258 + MER33 DNA MER1_type 3 142 -182 1889 116 0 4 chrX 14508679 14508938 -148090992 - AluSq SINE Alu -7 306 49 23 68 0 0 chrX 14508941 14508985 -148090945 + AT_rich Low_complexity Low_complexity 1 44 0 2201 105 25 17 chrX 14508994 14509347 -148090583 - L1MA5 LINE L1 -689 5611 5256 * 4059 149 30 1 chrX 14509317 14509981 -148089949 + L1MA5 LINE L1 5617 6299 -1 732 182 29 6 chrX 14509984 14510154 -148089776 + MER33 DNA MER1_type 150 323 -1 23 33 0 0 chrX 14510270 14510300 -148089630 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chrX 14511242 14511263 -148088667 + (T)n Simple_repeat Simple_repeat 1 21 0 3953 161 25 5 chrX 14511650 14512257 -148087673 - LTR31 LTR ERV1 0 619 1 557 277 161 8 chrX 14512432 14512681 -148087249 - L2 LINE L2 0 3313 3027 336 274 68 14 chrX 14512900 14513046 -148086884 - L1ME LINE L1 -335 5786 5633 34 42 0 0 chrX 14513054 14513102 -148086828 + AT_rich Low_complexity Low_complexity 1 48 0 2581 52 0 3 chrX 14513282 14513590 -148086340 + AluY SINE Alu 1 307 -4 406 241 44 22 chrX 14514173 14514310 -148085620 - L1MC4 LINE L1 -1 8041 7902 241 345 0 0 chrX 14514284 14514371 -148085559 + L1MC4 LINE L1 6614 6700 -1342 * 249 180 0 0 chrX 14514377 14514427 -148085503 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 392 220 182 8 chrX 14514537 14514669 -148085261 - MER96B DNA MER1_type? 0 417 263 804 283 45 29 chrX 14514940 14515312 -148084618 - L1MC4 LINE L1 -202 7840 7490 2756 141 24 22 chrX 14515540 14516000 -148083930 + LTR38 LTR ERV1 1 461 -95 749 110 0 0 chrX 14516001 14516101 -148083829 - LTR12 LTR ERV1 0 714 615 341 233 11 0 chrX 14516103 14516193 -148083737 - LTR30 LTR ERV1 -79 643 553 1669 161 359 18 chrX 14516195 14516697 -148083233 - pTR5 LTR ERV1 -406 2032 1360 464 132 132 38 chrX 14516697 14516803 -148083127 + LTR38 LTR ERV1 441 556 0 464 268 88 76 chrX 14517627 14517651 -148082279 + L1MC4a LINE L1 5583 5605 -557 1256 180 31 0 chrX 14517651 14517879 -148082051 - L1MD2 LINE L1 -18 6341 6107 464 268 88 76 chrX 14517879 14518173 -148081757 + L1MC4a LINE L1 5605 5908 -254 2008 149 0 0 chrX 14518173 14518468 -148081462 + AluSx SINE Alu 1 295 -17 464 268 88 76 chrX 14518468 14518491 -148081439 + L1MC4a LINE L1 5908 5929 -233 2324 75 3 7 chrX 14518836 14519130 -148080800 - AluSg SINE Alu -17 293 1 270 0 0 0 chrX 14519780 14519810 -148080120 + (TG)n Simple_repeat Simple_repeat 2 31 0 2376 58 10 3 chrX 14521201 14521496 -148078434 - AluSx SINE Alu -15 297 1 2391 91 0 3 chrX 14521775 14522083 -148077847 - AluSg SINE Alu -3 307 1 195 69 0 0 chrX 14522099 14522128 -148077802 + (TA)n Simple_repeat Simple_repeat 1 29 0 1605 82 59 102 chrX 14522128 14522431 -148077499 - AluSx SINE Alu -22 290 1 2652 40 0 0 chrX 14522581 14522878 -148077052 - AluY SINE Alu -2 309 13 760 207 25 71 chrX 14523233 14523306 -148076624 - MER5A DNA MER1_type 0 189 114 2262 97 0 17 chrX 14523306 14523442 -148076488 + AluSx SINE Alu 1 138 -174 2390 87 3 0 chrX 14523442 14523741 -148076189 + AluSp SINE Alu 1 300 -13 2262 97 0 17 chrX 14523741 14523903 -148076027 + AluSx SINE Alu 138 294 -18 760 207 25 71 chrX 14523903 14524027 -148075903 - MER5A DNA MER1_type -75 114 1 195 282 56 0 chrX 14524635 14524706 -148075224 + L2 LINE L2 2986 3060 -212 240 159 214 79 chrX 14525109 14525128 -148074802 - L1ME4a LINE L1 -1 6120 6105 1790 205 86 38 chrX 14525128 14525571 -148074359 + MLT1C LTR MaLR 1 464 -3 240 159 214 79 chrX 14525571 14525677 -148074253 - L1ME4a LINE L1 -16 6105 5978 362 49 85 0 chrX 14525934 14526016 -148073914 + GA-rich Low_complexity Low_complexity 1 89 0 2159 128 0 0 chrX 14526613 14526901 -148073029 + AluSx SINE Alu 1 288 -24 3837 142 38 16 chrX 14527130 14527765 -148072165 + L1MB8 LINE L1 5521 6169 -9 2253 98 3 0 chrX 14529127 14529423 -148070507 - AluSx SINE Alu -13 299 3 2325 109 65 0 chrX 14529535 14529874 -148070056 - MER46B DNA MER2_type 0 236 1 1324 175 31 18 chrX 14530709 14530995 -148068935 - Charlie4a DNA MER1_type -143 365 76 346 238 9 38 chrX 14531431 14531536 -148068394 - MLT1H LTR MaLR -23 526 425 274 227 97 16 chrX 14531631 14531754 -148068176 - MLT1J LTR MaLR -263 146 68 2081 106 21 0 chrX 14532097 14532414 -148067516 - AluSq SINE Alu 0 323 1 2509 48 6 6 chrX 14532736 14533047 -148066883 - AluY SINE Alu 0 311 1 344 113 0 19 chrX 14533047 14533100 -148066830 - MER58B DNA MER1_type -1 340 289 1034 67 0 0 chrX 14533100 14533234 -148066696 + AluY SINE Alu 175 308 -3 1459 188 72 4 chrX 14533234 14533510 -148066420 - MER58B DNA MER1_type -44 297 3 1375 226 97 19 chrX 14534130 14534556 -148065374 - L1ME4a LINE L1 -195 5975 5514 330 176 59 15 chrX 14535145 14535213 -148064717 - MLT1H LTR MaLR -250 299 229 606 277 95 0 chrX 14535523 14535671 -148064259 + MER96 DNA MER1_type? 14 175 0 1501 179 54 56 chrX 14535715 14535914 -148064016 + LTR37B LTR ERV1 77 275 -193 2199 104 0 31 chrX 14535914 14536231 -148063699 - AluSx SINE Alu -4 308 2 1501 179 54 56 chrX 14536231 14536284 -148063646 + LTR37B LTR ERV1 275 327 -141 2349 88 3 3 chrX 14536284 14536590 -148063340 - AluSx SINE Alu -6 306 1 1501 179 54 56 chrX 14536590 14536727 -148063203 + LTR37B LTR ERV1 327 466 -2 297 303 134 7 chrX 14536951 14537093 -148062837 - MIR SINE MIR -54 208 49 826 175 51 28 chrX 14537379 14537556 -148062374 + MER5A DNA MER1_type 1 181 -8 304 205 115 0 chrX 14537573 14537651 -148062279 + L2 LINE L2 3219 3305 -8 2263 54 11 4 chrX 14538523 14538802 -148061128 + AluY SINE Alu 1 312 0 259 32 0 0 chrX 14538802 14538833 -148061097 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 249 297 20 20 chrX 14539237 14539303 -148060627 + MIR SINE MIR 75 143 -119 246 32 0 0 chrX 14539303 14539334 -148060596 + (GGA)n Simple_repeat Simple_repeat 3 33 0 249 297 20 20 chrX 14539334 14539368 -148060562 + MIR SINE MIR 142 175 -87 521 241 9 0 chrX 14541949 14542061 -148057869 - ORSL DNA AcHobo -157 118 6 2356 83 0 7 chrX 14542765 14543066 -148056864 + AluY SINE Alu 1 299 -12 408 271 11 72 chrX 14543786 14543967 -148055963 + MER5B DNA MER1_type 7 176 -2 1098 160 91 0 chrX 14544101 14544288 -148055642 - MER20 DNA MER1_type 0 219 16 861 177 45 61 chrX 14545671 14545697 -148054233 - MER3 DNA MER1_type -4 205 180 1151 175 32 23 chrX 14545697 14545914 -148054016 + MER20 DNA MER1_type 1 219 0 861 177 45 61 chrX 14545914 14546085 -148053845 - MER3 DNA MER1_type -29 180 11 280 361 25 16 chrX 14546745 14546867 -148053063 - L2 LINE L2 -1 3312 3190 288 253 187 11 chrX 14547889 14547980 -148051950 - MIR SINE MIR -110 152 46 2505 174 80 67 chrX 14548465 14549079 -148050851 - MLT1E3 LTR MaLR 0 624 3 2283 95 0 0 chrX 14549154 14549450 -148050480 - AluSx SINE Alu -16 296 1 813 246 6 0 chrX 14549528 14549703 -148050227 - MIR SINE MIR -8 254 79 1153 277 173 38 chrX 14551839 14552464 -148047466 - L2 LINE L2 -1940 1374 666 2923 91 5 2 chrX 14552488 14552884 -148047046 + L1MA3 LINE L1 5462 5858 -447 850 56 0 0 chrX 14552907 14553014 -148046916 - AluSg/x SINE Alu 0 309 203 319 284 45 97 chrX 14553020 14553133 -148046797 - L2 LINE L2 -2714 600 496 1077 243 14 0 chrX 14553133 14553351 -148046579 + MER58A DNA MER1_type 1 221 -3 319 284 45 97 chrX 14553351 14553392 -148046538 - L2 LINE L2 -2818 496 454 1253 160 24 0 chrX 14554357 14554563 -148045367 + MER2 DNA MER2_type 1 211 -134 2439 37 0 0 chrX 14554675 14554947 -148044983 - AluY SINE Alu -19 292 21 23 0 0 0 chrX 14555223 14555246 -148044684 + AT_rich Low_complexity Low_complexity 1 23 0 864 262 9 14 chrX 14556106 14556316 -148043614 + MER63A DNA MER1_type 2 210 0 1702 97 4 0 chrX 14556480 14556706 -148043224 - AluSg/x SINE Alu -12 300 74 643 118 0 0 chrX 14557011 14557096 -148042834 + AluJ/FLAM SINE Alu 2 86 -226 4544 129 15 122 chrX 14557244 14558789 -148041141 + pTR5 LTR ERV1 742 2606 0 194 268 155 31 chrX 14558897 14558994 -148040936 + MER5B DNA MER1_type 1 109 -69 292 232 119 65 chrX 14559716 14559985 -148039945 - L2 LINE L2 0 3313 3072 2135 96 0 0 chrX 14560280 14560551 -148039379 - AluSg SINE Alu -15 295 25 25 0 0 0 chrX 14560560 14560585 -148039345 + AT_rich Low_complexity Low_complexity 1 25 0 316 263 153 29 chrX 14561022 14561159 -148038771 - L2 LINE L2 -349 2965 2812 1086 207 52 41 chrX 14561262 14561438 -148038492 + Charlie4 DNA MER1_type 5 187 -1774 1767 170 0 23 chrX 14561438 14561744 -148038186 - AluJo SINE Alu -13 299 1 1086 207 52 41 chrX 14561744 14561857 -148038073 + Charlie4 DNA MER1_type 187 297 -1664 656 247 52 80 chrX 14561902 14562290 -148037640 + Charlie4 DNA MER1_type 1438 1814 -147 1032 214 48 14 chrX 14563017 14563227 -148036703 + MER20 DNA MER1_type 1 217 -2 302 260 60 0 chrX 14564233 14564333 -148035597 + L2 LINE L2 2133 2238 -1076 243 296 99 47 chrX 14564298 14564470 -148035460 - L2 LINE L2 -1339 1975 1795 * 395 250 0 62 chrX 14565339 14565467 -148034463 + LTR33A LTR ERVL 404 523 0 1914 196 66 92 chrX 14566309 14566841 -148033089 - MLT2B1 LTR ERVL 0 520 3 28 0 0 0 chrX 14567138 14567166 -148032764 + AT_rich Low_complexity Low_complexity 1 28 0 788 33 0 0 chrX 14567166 14567257 -148032673 - L1MA1 LINE L1 0 6302 6212 187 288 137 65 chrX 14568010 14568149 -148031781 - L2 LINE L2 -4 3309 3161 326 355 95 35 chrX 14568538 14569085 -148030845 - L2 LINE L2 -583 2731 2152 268 336 126 7 chrX 14569100 14569243 -148030687 + L2 LINE L2 2079 2238 -1076 210 293 136 36 chrX 14569241 14569381 -148030549 - L2 LINE L2 -1366 1948 1795 * 273 280 110 34 chrX 14570510 14570628 -148029302 - L2 LINE L2 0 3272 3146 21 0 0 0 chrX 14570726 14570747 -148029183 + AT_rich Low_complexity Low_complexity 1 21 0 2163 93 7 0 chrX 14570754 14571055 -148028875 + AluSq SINE Alu 3 305 0 1124 119 0 0 chrX 14571055 14571233 -148028697 + AluSg/x SINE Alu 133 310 0 863 266 82 0 chrX 14571234 14571467 -148028463 - MIR SINE MIR -8 254 3 295 236 9 9 chrX 14571501 14571611 -148028319 + (TCCA)n Simple_repeat Simple_repeat 3 112 0 993 290 63 33 chrX 14573006 14573403 -148026527 + MLT1J2 LTR MaLR 40 448 -2 276 317 37 49 chrX 14573535 14573699 -148026231 - MER5A DNA MER1_type -21 168 7 472 344 27 27 chrX 14574851 14575072 -148024858 - MIR SINE MIR -13 249 29 553 273 54 44 chrX 14575129 14575334 -148024596 - MIR SINE MIR -55 207 1 1731 169 12 19 chrX 14576066 14576391 -148023539 + MER33 DNA MER1_type 1 323 -1 280 347 130 14 chrX 14576406 14576622 -148023308 + MIR SINE MIR 22 262 0 246 275 25 83 chrX 14576642 14576762 -148023168 + HAL1 LINE L1 1545 1657 -850 219 69 0 0 chrX 14576820 14576849 -148023081 + (GA)n Simple_repeat Simple_repeat 1 29 0 30 45 0 0 chrX 14577070 14577114 -148022816 + AT_rich Low_complexity Low_complexity 1 44 0 260 297 118 59 chrX 14577156 14578488 -148021442 + L1MDa LINE L1 2390 3642 -2898 2540 68 3 10 chrX 14578488 14578799 -148021131 + AluSc SINE Alu 1 309 0 260 297 118 59 chrX 14578799 14579052 -148020878 + L1MDa LINE L1 3642 3879 -2661 345 62 0 0 chrX 14579052 14579100 -148020830 + (CA)n Simple_repeat Simple_repeat 1 48 0 260 297 118 59 chrX 14579100 14579331 -148020599 + L1MDa LINE L1 3879 4323 -2217 737 294 45 88 chrX 14579420 14579690 -148020240 + L1MDa LINE L1 4529 4809 -1731 2166 103 7 7 chrX 14579690 14580000 -148019930 + AluSg SINE Alu 1 310 0 737 294 45 88 chrX 14580000 14580021 -148019909 + L1MDa LINE L1 4809 4829 -1711 207 0 0 0 chrX 14580021 14580044 -148019886 + (CAA)n Simple_repeat Simple_repeat 1 23 0 737 294 45 88 chrX 14580044 14580476 -148019454 + L1MDa LINE L1 4829 5222 -1318 31 0 0 0 chrX 14580610 14580641 -148019289 + AT_rich Low_complexity Low_complexity 1 31 0 1937 149 0 0 chrX 14580642 14580951 -148018979 + AluSx SINE Alu 1 309 0 1347 170 18 0 chrX 14581177 14581395 -148018535 + Tigger3(Golem) DNA MER2_type 2806 3027 -2 1052 164 53 43 chrX 14581551 14581758 -148018172 + MER3 DNA MER1_type 1 209 0 768 295 94 60 chrX 14581814 14582197 -148017733 - MLT1I LTR MaLR -13 396 1 854 321 62 25 chrX 14583196 14583551 -148016379 - MER90 LTR ERV1 -7 568 201 2081 83 10 56 chrX 14583880 14584182 -148015748 + AluSc SINE Alu 1 288 -21 276 290 49 91 chrX 14584426 14584764 -148015166 - L2 LINE L2 -260 3053 2675 961 232 5 31 chrX 14585689 14585913 -148014017 - MER20 DNA MER1_type -1 218 1 342 0 0 0 chrX 14586191 14586229 -148013701 + (TG)n Simple_repeat Simple_repeat 2 39 0 989 226 19 14 chrX 14586852 14587060 -148012870 + MIR SINE MIR 9 217 -45 348 24 0 0 chrX 14587284 14587325 -148012605 + (TG)n Simple_repeat Simple_repeat 2 42 0 405 344 15 20 chrX 14587395 14587590 -148012340 - MIR SINE MIR -54 208 15 1154 113 0 6 chrX 14588860 14589020 -148010910 + THE1B LTR MaLR 1 159 -205 4393 61 2 0 chrX 14589020 14589559 -148010371 + HERVL LTR ERVL 2684 3223 -2431 6940 102 11 0 chrX 14589559 14590503 -148009427 + THE1B-int LTR MaLR 627 1580 0 2462 113 17 3 chrX 14590506 14590851 -148009079 + THE1B LTR MaLR 15 364 0 605 146 219 0 chrX 14591529 14591652 -148008278 + MER20 DNA MER1_type 9 158 -61 * 1222 117 5 27 chrX 14591650 14591838 -148008092 + MLT1D LTR MaLR 322 505 0 233 265 24 12 chrX 14591910 14591993 -148007937 + L1ME LINE L1 5429 5512 -652 308 393 38 23 chrX 14592043 14592289 -148007641 + L1ME LINE L1 5588 5840 -330 1805 151 0 25 chrX 14592289 14592567 -148007363 + AluJo SINE Alu 3 273 -39 308 393 38 23 chrX 14592567 14592585 -148007345 + L1ME LINE L1 5840 5856 -314 2119 37 0 19 chrX 14592697 14592966 -148006964 + L1PA4 LINE L1 5892 6155 0 2579 58 0 3 chrX 14593354 14593666 -148006264 + AluY SINE Alu 1 311 0 322 306 47 72 chrX 14593830 14594023 -148005907 - MIR SINE MIR -55 207 20 495 328 152 42 chrX 14594262 14594550 -148005380 + L3 LINE CR1 1082 1430 -147 294 29 0 0 chrX 14594550 14594585 -148005345 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 495 328 152 42 chrX 14594585 14594705 -148005225 + L3 LINE CR1 1430 1535 -42 198 0 0 0 chrX 14594846 14594868 -148005062 + (TG)n Simple_repeat Simple_repeat 1 22 0 528 45 0 0 chrX 14595854 14595921 -148004009 + (GA)n Simple_repeat Simple_repeat 2 68 0 259 300 33 33 chrX 14596237 14596357 -148003573 + MLT1L LTR MaLR 149 268 -347 268 322 105 23 chrX 14596561 14596732 -148003198 + MLT1L LTR MaLR 431 615 0 468 283 14 28 chrX 14597657 14597802 -148002128 + MIR SINE MIR 111 253 -9 411 255 92 0 chrX 14598372 14598470 -148001460 + MIR SINE MIR 6 112 -150 883 307 93 25 chrX 14599167 14599694 -148000236 + L1MC5 LINE L1 5254 5816 -1992 640 268 26 83 chrX 14599741 14600126 -147999804 + L1MC5 LINE L1 7499 7861 -100 64 14 0 0 chrX 14600653 14600724 -147999206 + AT_rich Low_complexity Low_complexity 1 71 0 415 232 70 37 chrX 14600881 14601141 -147998789 - L1MC5 LINE L1 -143 7899 7604 353 211 0 0 chrX 14601642 14601718 -147998212 - L1MC5 LINE L1 -563 7398 7323 654 308 46 45 chrX 14601739 14602286 -147997644 - L1MC4 LINE L1 -571 7471 6923 859 300 87 4 chrX 14602417 14602694 -147997236 - L1MC4 LINE L1 -1030 7012 6713 318 26 0 0 chrX 14602703 14602742 -147997188 + (CA)n Simple_repeat Simple_repeat 2 40 0 343 247 163 80 chrX 14602861 14603100 -147996830 - L1MC4a LINE L1 -1370 6438 6180 21 0 0 0 chrX 14603109 14603130 -147996800 + AT_rich Low_complexity Low_complexity 1 21 0 5050 158 34 62 chrX 14604702 14605540 -147994390 + L1PB3 LINE L1 4125 4985 -1169 334 21 0 21 chrX 14605540 14605587 -147994343 + MADE1 DNA Mariner 35 80 0 5050 158 34 62 chrX 14605587 14606779 -147993151 + L1PB3 LINE L1 4985 6150 -4 44 20 0 0 chrX 14606848 14606899 -147993031 + AT_rich Low_complexity Low_complexity 1 51 0 2568 45 0 16 chrX 14607169 14607479 -147992451 + AluY SINE Alu 1 305 -6 1840 85 0 0 chrX 14607479 14607713 -147992217 + AluSc SINE Alu 71 306 -3 414 321 65 16 chrX 14608637 14608821 -147991109 + MLT1K LTR MaLR 396 588 0 296 317 42 0 chrX 14608822 14608964 -147990966 + L1MC4a LINE L1 5738 5885 -1923 2108 163 11 3 chrX 14609063 14609424 -147990506 + MER47A DNA MER2_type 2 365 -1 279 0 0 0 chrX 14609435 14609466 -147990464 + (TG)n Simple_repeat Simple_repeat 2 32 0 330 115 0 0 chrX 14610670 14610722 -147989208 + (TG)n Simple_repeat Simple_repeat 2 53 0 1370 217 117 16 chrX 14611894 14612263 -147987667 + L1ME LINE L1 5274 5679 -485 243 308 26 68 chrX 14612678 14612795 -147987135 - L2 LINE L2 -4 3309 3198 1309 209 46 61 chrX 14613232 14613577 -147986353 + MER58B DNA MER1_type 2 341 0 285 135 0 0 chrX 14614313 14614365 -147985565 + (CAT)n Simple_repeat Simple_repeat 3 54 0 251 314 141 33 chrX 14614389 14614568 -147985362 - MIR3 SINE MIR -48 214 12 3258 169 28 3 chrX 14614634 14615248 -147984682 - L1MB2 LINE L1 0 6171 5543 402 289 62 7 chrX 14616493 14616635 -147983295 + MIR SINE MIR 11 146 -62 619 211 312 12 chrX 14616639 14616886 -147983044 - MER5C DNA MER1_type -3 321 1 918 208 62 5 chrX 14616899 14617091 -147982839 + MER58A DNA MER1_type 6 208 -16 216 167 71 0 chrX 14617122 14617164 -147982766 + MIR3 SINE MIR 138 182 -26 183 363 30 30 chrX 14618218 14618353 -147981577 + L2 LINE L2 2344 2478 -836 857 331 41 25 chrX 14618603 14618966 -147980964 + LTR16C LTR ERVL 119 487 -4 644 281 25 46 chrX 14620081 14620277 -147979653 - LTR33 LTR ERVL -308 213 22 500 300 54 61 chrX 14620840 14621153 -147978777 - L2 LINE L2 -90 3223 2913 211 290 48 16 chrX 14621213 14621275 -147978655 + MER5A DNA MER1_type 61 124 -65 1888 213 44 80 chrX 14621552 14622204 -147977726 + MLT1E2 LTR MaLR 1 626 0 942 225 121 70 chrX 14622506 14622879 -147977051 - LTR16A LTR ERVL 0 450 59 1741 130 68 52 chrX 14623184 14623553 -147976377 - THE1C LTR MaLR 0 375 1 293 323 70 28 chrX 14624378 14624663 -147975267 + HAL1 LINE L1 1233 1529 -978 272 245 0 0 chrX 14624729 14624782 -147975148 + MER94 DNA DNA 78 130 -4 519 307 58 33 chrX 14624810 14625139 -147974791 + HAL1 LINE L1 1550 1886 -621 746 221 102 22 chrX 14625330 14625556 -147974374 - MIR SINE MIR 0 262 19 253 240 10 21 chrX 14625962 14626058 -147973872 + HAL1 LINE L1 2270 2364 -143 440 332 28 90 chrX 14626506 14626795 -147973135 + L2 LINE L2 2999 3269 -3 2047 178 21 5 chrX 14628436 14628813 -147971117 - MER82 DNA MER2_type -270 383 1 2330 53 3 7 chrX 14629307 14629652 -147970278 - AluY SINE Alu 0 344 1 953 109 32 18 chrX 14630287 14630450 -147969480 - MER20 DNA MER1_type -44 175 2 524 291 111 5 chrX 14630952 14631151 -147968779 + MIR SINE MIR 2 221 -41 393 121 30 0 chrX 14631222 14631288 -147968642 + LTR37A LTR ERV1 100 167 -259 651 230 173 0 chrX 14631289 14631480 -147968450 + REP3 LTR ERV 339 562 0 1333 237 181 50 chrX 14631677 14632115 -147967815 - MLT1E LTR MaLR 0 593 73 2109 92 0 4 chrX 14632115 14632459 -147967471 - AluSx SINE Alu 0 356 14 1333 237 181 50 chrX 14632459 14632543 -147967387 - MLT1E LTR MaLR -520 73 1 672 265 20 7 chrX 14633232 14633383 -147966547 + MER63A DNA MER1_type 49 201 -9 239 0 0 0 chrX 14633648 14633681 -147966249 + L1PA2 LINE L1 6118 6150 -5 421 267 31 56 chrX 14634022 14634183 -147965747 + MIR SINE MIR 79 235 -27 23 0 0 0 chrX 14634192 14634215 -147965715 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 14634484 14634506 -147965424 + AT_rich Low_complexity Low_complexity 1 22 0 2483 117 36 61 chrX 14634834 14635329 -147964601 - L1MB8 LINE L1 -5 6173 5691 226 386 103 25 chrX 14635690 14636009 -147963921 + L2 LINE L2 2249 2592 -722 258 325 31 56 chrX 14636069 14636229 -147963701 + L2 LINE L2 2949 3104 -168 198 246 18 18 chrX 14636324 14636381 -147963549 + L2 LINE L2 3216 3272 0 336 248 139 57 chrX 14637964 14638194 -147961736 + HAL1 LINE L1 832 1080 -1427 3626 141 7 84 chrX 14638197 14638352 -147961578 + L1MA10 LINE L1 5626 5791 -543 492 99 0 0 chrX 14638352 14638423 -147961507 + (TA)n Simple_repeat Simple_repeat 2 72 0 3626 141 7 84 chrX 14638423 14638992 -147960938 + L1MA10 LINE L1 5791 6294 -40 227 284 202 9 chrX 14639339 14639448 -147960482 - LTR33 LTR ERVL -348 173 44 281 209 86 48 chrX 14639517 14639622 -147960308 - LTR33A LTR ERVL -8 515 407 1844 291 63 9 chrX 14639959 14640338 -147959592 - L2 LINE L2 -141 3172 2815 2590 45 0 3 chrX 14640338 14640649 -147959281 - AluY SINE Alu -1 310 1 1844 291 63 9 chrX 14640649 14641210 -147958720 - L2 LINE L2 -498 2815 2176 743 159 182 23 chrX 14642795 14642971 -147956959 + MER20 DNA MER1_type 16 219 0 516 272 76 48 chrX 14642974 14643697 -147956233 - L1ME LINE L1 -331 5790 5025 267 191 73 15 chrX 14644045 14644113 -147955817 - MIR SINE MIR -64 198 127 2187 119 0 3 chrX 14648009 14648319 -147951611 - AluSq SINE Alu -4 309 1 417 219 25 67 chrX 14648693 14648850 -147951080 - MLT1H LTR MaLR -16 533 403 298 219 0 0 chrX 14649067 14649131 -147950799 - MLT1I LTR MaLR -276 133 70 2455 41 3 38 chrX 14650113 14650429 -147949501 + AluY SINE Alu 1 305 -6 1978 196 146 7 chrX 14650444 14650862 -147949068 + MLT1D LTR MaLR 1 476 -29 442 314 129 0 chrX 14650908 14651235 -147948695 + LTR16C LTR ERVL 114 491 0 2205 123 0 0 chrX 14651451 14651744 -147948186 + AluSx SINE Alu 1 293 -19 4383 144 28 3 chrX 14652642 14652993 -147946937 - L1PB3 LINE L1 -1 6153 5812 486 0 0 0 chrX 14652993 14653047 -147946883 + (TA)n Simple_repeat Simple_repeat 2 55 0 4383 144 28 3 chrX 14653047 14653392 -147946538 - L1PB3 LINE L1 -342 5812 5436 369 0 0 0 chrX 14653392 14653433 -147946497 + (TG)n Simple_repeat Simple_repeat 2 42 0 4383 144 28 3 chrX 14653433 14653452 -147946478 - L1PB3 LINE L1 -718 5436 5419 4797 104 7 93 chrX 14653452 14654173 -147945757 - L1PB1 LINE L1 -15 6136 5505 2299 98 0 10 chrX 14654173 14654478 -147945452 - AluY SINE Alu -9 302 1 4797 104 7 93 chrX 14654478 14654652 -147945278 - L1PB1 LINE L1 -646 5505 5318 30 0 0 0 chrX 14654713 14654743 -147945187 + AT_rich Low_complexity Low_complexity 1 30 0 605 329 46 68 chrX 14654794 14654903 -147945027 + L2 LINE L2 2232 2342 -972 491 155 194 0 chrX 14654903 14655006 -147944924 - FLAM_A SINE Alu -10 123 1 605 329 46 68 chrX 14655006 14655352 -147944578 + L2 LINE L2 2342 2677 -637 322 331 65 7 chrX 14655686 14655840 -147944090 + L1MC4a LINE L1 5769 5931 -1877 223 359 7 28 chrX 14655900 14656042 -147943888 + L2 LINE L2 2748 2886 -428 845 144 50 108 chrX 14656237 14656459 -147943471 + MER3 DNA MER1_type 1 209 0 466 254 111 8 chrX 14656535 14656661 -147943269 + L2 LINE L2 3134 3272 0 194 386 76 14 chrX 14656666 14656876 -147943054 - L2 LINE L2 -511 2803 2581 785 316 58 28 chrX 14656955 14657350 -147942580 - LTR16C LTR ERVL 0 491 85 234 278 111 28 chrX 14657441 14657549 -147942381 - L2 LINE L2 -840 2474 2358 2674 177 51 103 chrX 14657788 14658062 -147941868 + MLT1E1 LTR MaLR 1 288 -366 2142 144 6 18 chrX 14658062 14658403 -147941527 - MER1B DNA MER1_type 0 337 1 2674 177 51 103 chrX 14658403 14658818 -147941112 + MLT1E1 LTR MaLR 288 654 0 334 272 200 0 chrX 14658820 14658945 -147940985 + MIR SINE MIR 12 161 -101 2006 234 45 10 chrX 14659300 14659813 -147940117 - L1ME3A LINE L1 -11 6159 5629 675 193 77 28 chrX 14660239 14660420 -147939510 + MLT1J2 LTR MaLR 23 212 -238 238 299 0 13 chrX 14660472 14660549 -147939381 + MLT1I LTR MaLR 328 403 -6 297 276 86 35 chrX 14660736 14660852 -147939078 - MIR SINE MIR -71 137 16 1027 260 48 0 chrX 14660895 14661145 -147938785 - LTR16C LTR ERVL -9 482 221 1124 156 16 0 chrX 14661146 14661332 -147938598 - MER5A DNA MER1_type 0 189 1 1911 210 14 32 chrX 14661337 14661770 -147938160 - MER99 DNA DNA -1 827 403 1493 240 9 0 chrX 14661883 14662225 -147937705 - MER99 DNA DNA -453 375 31 236 390 17 8 chrX 14662239 14662357 -147937573 - LTR16C LTR ERVL -264 227 109 4398 128 21 53 chrX 14662393 14662771 -147937159 + L1MA7 LINE L1 5470 5858 -433 2773 129 12 14 chrX 14662771 14663198 -147936732 + MSTB LTR MaLR 1 426 0 4398 128 21 53 chrX 14663198 14663668 -147936262 + L1MA7 LINE L1 5858 6291 0 829 169 38 47 chrX 14663724 14663937 -147935993 - L1MB8 LINE L1 -6 6172 5962 207 0 0 0 chrX 14664057 14664080 -147935850 + (T)n Simple_repeat Simple_repeat 1 23 0 1028 137 6 48 chrX 14665168 14665336 -147934594 + AluJb SINE Alu 129 289 -23 590 296 107 35 chrX 14665456 14665867 -147934063 + L1ME4a LINE L1 5412 5850 -271 294 276 41 41 chrX 14666082 14666180 -147933750 + L2 LINE L2 3169 3266 -6 1721 200 66 2 chrX 14667032 14667427 -147932503 + L1MD2 LINE L1 5930 6349 -10 328 299 113 48 chrX 14667609 14667900 -147932030 - L1MC4a LINE L1 -1870 5938 5629 204 373 27 0 chrX 14668488 14668563 -147931367 + MIR SINE MIR 1 77 -185 * 218 211 225 0 chrX 14668547 14668618 -147931312 - MIR SINE MIR -160 102 16 402 287 147 34 chrX 14668654 14669018 -147930912 - MLT1H LTR MaLR -18 531 12 940 272 31 97 chrX 14669256 14669711 -147930219 - MLT1L LTR MaLR 0 615 97 410 204 43 11 chrX 14670937 14671030 -147928900 - MIR SINE MIR -1 261 166 278 185 19 0 chrX 14672631 14672685 -147927245 + L3 LINE CR1 1512 1566 -11 629 195 92 6 chrX 14672739 14672903 -147927027 + L1MC/D LINE L1 5639 5816 -426 207 0 0 0 chrX 14672908 14672931 -147926999 + (TTA)n Simple_repeat Simple_repeat 3 25 0 3433 116 16 0 chrX 14672942 14673453 -147926477 - L1PA16 LINE L1 -8 6158 5640 308 209 11 66 chrX 14673455 14673546 -147926384 + LTR16A1 LTR ERVL 372 457 0 1726 182 24 15 chrX 14673822 14674157 -147925773 + MER58B DNA MER1_type 1 338 -3 703 205 205 12 chrX 14675226 14675392 -147924538 + MIR SINE MIR 9 206 -56 1810 210 41 21 chrX 14675436 14675855 -147924075 + MER63B DNA MER1_type 7 433 -3 1033 145 17 11 chrX 14675923 14676102 -147923828 + MLT2D LTR ERVL 1 180 -234 3951 173 21 19 chrX 14676104 14676873 -147923057 + L1MB8 LINE L1 5404 6173 -5 432 314 144 10 chrX 14677780 14677974 -147921956 + MIR SINE MIR 10 229 -33 238 312 127 21 chrX 14678026 14678215 -147921715 + L2 LINE L2 2611 2819 -495 1538 270 46 15 chrX 14678358 14678771 -147921159 - LTR40a LTR ERVL 0 519 90 585 236 35 23 chrX 14678806 14678980 -147920950 - MER96B DNA MER1_type? -241 176 1 15340 118 28 6 chrX 14679020 14681338 -147918592 - Tigger1 DNA MER2_type -1 2417 50 5790 212 30 6 chrX 14681349 14683049 -147916881 + L1M3f LINE L1 14 1754 -4065 4273 128 169 37 chrX 14683049 14684040 -147915890 + MER11B LTR ERVK 1 1225 -11 412 215 89 103 chrX 14684040 14684398 -147915532 + L1M3f LINE L1 1758 2110 -4218 5623 137 27 36 chrX 14684401 14685468 -147914462 - L1MA7 LINE L1 -43 6248 5190 2319 57 0 10 chrX 14685468 14685768 -147914162 - L1PA7 LINE L1 0 6154 5858 5623 137 27 36 chrX 14685768 14685909 -147914021 - L1MA7 LINE L1 -1101 5190 5049 225 0 0 0 chrX 14686265 14686290 -147913640 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chrX 14686490 14686511 -147913419 + AT_rich Low_complexity Low_complexity 1 21 0 1832 219 50 44 chrX 14686909 14687255 -147912675 + L1ME3 LINE L1 5585 5937 -225 2376 105 0 0 chrX 14687255 14687559 -147912371 + AluSp SINE Alu 1 304 -9 1832 219 50 44 chrX 14687559 14687778 -147912152 + L1ME3 LINE L1 5937 6153 -9 2529 33 0 0 chrX 14688264 14688563 -147911367 + L1PA3 LINE L1 5857 6155 0 2248 108 0 10 chrX 14688886 14689193 -147910737 + AluSg SINE Alu 3 306 -4 2245 110 7 7 chrX 14689245 14689732 -147910198 - AluSg SINE Alu 0 310 1 589 13 26 0 chrX 14689776 14689854 -147910076 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 221 0 0 33 chrX 14691771 14691801 -147908129 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 247 303 45 11 chrX 14691817 14691906 -147908024 + MIR SINE MIR 165 256 -6 229 339 78 26 chrX 14691957 14692072 -147907858 - L2 LINE L2 -3 3269 3149 793 239 18 0 chrX 14692079 14692246 -147907684 + MER5B DNA MER1_type 7 176 -2 197 308 46 15 chrX 14692317 14692382 -147907548 - L2 LINE L2 -476 2838 2772 887 263 35 61 chrX 14692546 14692858 -147907072 + LTR16C LTR ERVL 100 403 -88 818 189 0 123 chrX 14692863 14693107 -147906823 - MER20 DNA MER1_type -5 214 1 423 235 10 0 chrX 14693107 14693199 -147906731 + LTR16C LTR ERVL 396 488 -3 874 183 24 6 chrX 14693598 14693767 -147906163 - MER5B DNA MER1_type 0 178 7 198 143 0 0 chrX 14693829 14693864 -147906066 + (CA)n Simple_repeat Simple_repeat 1 35 0 606 255 137 5 chrX 14693958 14694170 -147905760 - MIR SINE MIR -16 246 7 1673 179 140 19 chrX 14695115 14695544 -147904386 - MLT2B2 LTR ERVL -40 480 1 341 366 11 5 chrX 14695544 14695730 -147904200 - L1MC/D LINE L1 -2185 5623 5437 462 307 26 26 chrX 14695755 14695983 -147903947 - L1MC/D LINE L1 -762 5384 5157 649 229 66 16 chrX 14696138 14696321 -147903609 - HsTC2 DNA Tc2 -1092 806 615 641 133 37 0 chrX 14696452 14696764 -147903166 + (TA)n Simple_repeat Simple_repeat 1 323 0 264 56 74 19 chrX 14696795 14696849 -147903081 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 187 146 36 0 chrX 14696889 14696944 -147902986 + (TA)n Simple_repeat Simple_repeat 2 58 0 376 263 76 36 chrX 14697135 14697385 -147902545 + L2 LINE L2 3000 3305 -8 2125 177 55 2 chrX 14697510 14697945 -147901985 + L1MB8 LINE L1 5581 6038 -140 772 143 0 7 chrX 14698044 14698191 -147901739 + L1MB8 LINE L1 6028 6173 -5 867 254 36 14 chrX 14698332 14698611 -147901319 + HsTC2 DNA Tc2 300 584 -1314 689 307 125 4 chrX 14698818 14699098 -147900832 + LTR16C LTR ERVL 18 331 -160 1190 146 26 0 chrX 14699316 14699508 -147900422 - MER20 DNA MER1_type 0 219 23 2335 119 14 24 chrX 14699955 14700324 -147899606 + MLT1A1 LTR MaLR 1 365 0 268 278 9 104 chrX 14700458 14700670 -147899260 + MLT1K LTR MaLR 397 588 0 1964 123 10 10 chrX 14700708 14701000 -147898930 - AluJb SINE Alu -20 292 1 22 0 0 0 chrX 14701132 14701154 -147898776 + AT_rich Low_complexity Low_complexity 1 22 0 7898 13 0 0 chrX 14701163 14702759 -147897171 + L1PA3 LINE L1 4560 6155 0 626 209 9 9 chrX 14702779 14702889 -147897041 + FLAM_A SINE Alu 1 110 -32 1415 153 48 8 chrX 14702982 14703230 -147896700 - AluJb SINE Alu -10 302 45 2227 74 0 3 chrX 14703444 14703792 -147896138 + AluY SINE Alu 1 347 0 2367 116 16 5 chrX 14703804 14704176 -147895754 - L1PA16 LINE L1 -9 6157 5782 1827 196 14 8 chrX 14704679 14705042 -147894888 + MLT1A1 LTR MaLR 1 365 0 2579 139 4 60 chrX 14707737 14707778 -147892152 - MSTC LTR MaLR 0 428 386 2308 115 3 3 chrX 14707778 14708090 -147891840 + AluSx SINE Alu 1 312 0 2579 139 4 60 chrX 14708090 14708501 -147891429 - MSTC LTR MaLR -42 386 1 320 252 137 7 chrX 14709405 14709544 -147890386 - L2 LINE L2 -45 3268 3112 1760 125 3 71 chrX 14709631 14709928 -147890002 + AluJb SINE Alu 33 309 -3 2058 147 28 14 chrX 14710146 14710506 -147889424 + MLT1A1 LTR MaLR 1 365 0 384 157 67 11 chrX 14710595 14710684 -147889246 - MER53 DNA DNA -94 95 2 262 278 0 14 chrX 14710697 14710769 -147889161 + LTR16C LTR ERVL 419 489 -2 487 267 45 40 chrX 14710914 14711123 -147888807 - MIR SINE MIR -34 228 16 2237 115 0 0 chrX 14711322 14711617 -147888313 + AluSx SINE Alu 1 295 -17 328 196 56 37 chrX 14711626 14711733 -147888197 - L1MC5 LINE L1 -48 7913 7805 724 178 20 14 chrX 14711790 14711936 -147887994 + MLT1D LTR MaLR 45 191 -314 528 68 75 7 chrX 14712046 14712193 -147887737 + (TA)n Simple_repeat Simple_repeat 2 158 0 973 91 0 0 chrX 14712228 14712349 -147887581 - AluY SINE Alu -190 121 1 254 32 0 0 chrX 14712397 14712428 -147887502 + HERVL LTR ERVL 3137 3167 -2487 656 65 71 12 chrX 14712432 14712600 -147887330 + (TA)n Simple_repeat Simple_repeat 2 179 0 543 248 0 0 chrX 14712602 14712715 -147887215 - FLAM_C SINE Alu -30 113 1 363 248 71 20 chrX 14713347 14713558 -147886372 - L2 LINE L2 0 3272 3042 1120 266 101 43 chrX 14713594 14714128 -147885802 + MLT1L LTR MaLR 39 603 -12 835 286 47 0 chrX 14714911 14715145 -147884785 - MIR SINE MIR 0 262 18 504 295 137 24 chrX 14715881 14716210 -147883720 + MLT1L LTR MaLR 1 366 -249 231 239 211 0 chrX 14716242 14716351 -147883579 + MLT1L LTR MaLR 459 590 -25 24 32 0 0 chrX 14717054 14717085 -147882845 + AT_rich Low_complexity Low_complexity 1 31 0 295 73 0 0 chrX 14717467 14717508 -147882422 - MADE1 DNA Mariner 0 80 40 983 265 32 29 chrX 14717558 14717905 -147882025 + LTR16C LTR ERVL 144 491 0 1367 331 122 30 chrX 14717913 14719083 -147880847 + L2 LINE L2 1795 3068 -204 1991 144 30 62 chrX 14719238 14719393 -147880537 + MLT1B LTR MaLR 1 159 -231 1675 116 8 21 chrX 14719393 14719635 -147880295 - AluJb SINE Alu -10 302 64 1991 144 30 62 chrX 14719635 14719882 -147880048 + MLT1B LTR MaLR 159 390 0 186 256 0 0 chrX 14721337 14721376 -147878554 - L2 LINE L2 -10 3303 3265 1028 178 27 32 chrX 14721609 14721794 -147878136 - MER5A DNA MER1_type -5 184 1 182 211 53 0 chrX 14722009 14722047 -147877883 - MIR SINE MIR 0 262 223 338 270 162 60 chrX 14722054 14722239 -147877691 - MIR SINE MIR 0 262 59 21 0 0 0 chrX 14722239 14722260 -147877670 + AT_rich Low_complexity Low_complexity 1 21 0 331 206 113 21 chrX 14722333 14722430 -147877500 - MIR SINE MIR -71 191 86 936 305 35 35 chrX 14722873 14723276 -147876654 + LTR16A LTR ERVL 30 432 -18 192 179 0 0 chrX 14723653 14723692 -147876238 + CT-rich Low_complexity Low_complexity 4 42 0 200 200 0 0 chrX 14723694 14723729 -147876201 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 660 191 20 0 chrX 14724215 14724362 -147875568 + L1MB2 LINE L1 6020 6169 -2 21 0 0 0 chrX 14724362 14724383 -147875547 + AT_rich Low_complexity Low_complexity 1 21 0 721 174 36 7 chrX 14724383 14724521 -147875409 - MLT1A2 LTR MaLR -51 323 182 1780 160 4 7 chrX 14724555 14724836 -147875094 + AluJb SINE Alu 1 280 -32 291 28 0 0 chrX 14724843 14724879 -147875051 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2347 56 0 3 chrX 14725789 14726075 -147873855 + AluY SINE Alu 1 285 -26 192 77 0 0 chrX 14726088 14726114 -147873816 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 971 266 174 38 chrX 14726467 14727207 -147872723 - HAL1 LINE L1 -101 2406 1566 3531 172 23 15 chrX 14727214 14727965 -147871965 - L1MA8 LINE L1 -3 6288 5532 774 115 0 0 chrX 14727969 14728091 -147871839 - L1MA8 LINE L1 -860 5286 5165 * 5167 253 38 18 chrX 14728088 14730579 -147869351 - L1 LINE L1 -3534 2794 252 37174 38 2 0 chrX 14730682 14736715 -147863215 - L1PA4 LINE L1 -107 6048 1 980 241 14 9 chrX 14736847 14737067 -147862863 - MER58A DNA MER1_type 0 224 4 346 289 103 51 chrX 14737588 14737744 -147862186 - MIR SINE MIR -79 183 20 370 280 72 0 chrX 14737820 14737945 -147861985 - MIR SINE MIR -17 245 112 1673 196 13 48 chrX 14738603 14738981 -147860949 + MLT1A1 LTR MaLR 1 365 0 903 200 43 85 chrX 14739314 14739498 -147860432 - L1MD3 LINE L1 -10 7985 7795 2239 119 14 14 chrX 14739498 14739852 -147860078 - THE1A LTR MaLR -1 354 1 12156 79 4 6 chrX 14739852 14741435 -147858495 - THE1A-int LTR MaLR 0 1580 1 2286 84 47 12 chrX 14741435 14741778 -147858152 - THE1A LTR MaLR 0 355 1 903 200 43 85 chrX 14741778 14741896 -147858034 - L1MD3 LINE L1 -197 7798 7694 253 352 57 29 chrX 14741896 14742001 -147857929 - MIR SINE MIR -147 115 8 232 283 28 19 chrX 14742024 14742130 -147857800 + MLT1J1 LTR MaLR 340 446 0 296 250 119 0 chrX 14743217 14743301 -147856629 + LTR16B LTR ERVL 1 94 -370 1383 245 73 36 chrX 14743382 14744095 -147855835 - Charlie7 DNA MER1_type -447 2165 1427 323 296 139 0 chrX 14744096 14744268 -147855662 - Charlie7 DNA MER1_type -2295 317 122 669 330 37 77 chrX 14744383 14744480 -147855450 + L1ME LINE L1 227 326 -5793 2183 98 0 0 chrX 14744480 14744756 -147855174 + AluSc SINE Alu 1 276 -33 669 330 37 77 chrX 14744756 14745149 -147854781 + L1ME LINE L1 326 697 -5422 1400 264 120 2 chrX 14745150 14745615 -147854315 + LTR33 LTR ERVL 2 521 0 463 293 25 73 chrX 14745655 14746313 -147853617 + L1ME LINE L1 717 1563 -4747 383 274 77 46 chrX 14746466 14746507 -147853423 + L1ME LINE L1 5278 5316 -829 2457 96 8 11 chrX 14746507 14746863 -147853067 - THE1A LTR MaLR 0 355 1 383 274 77 46 chrX 14746863 14747206 -147852724 + L1ME LINE L1 5316 5593 -552 1952 106 66 17 chrX 14747734 14748083 -147851847 + THE1C LTR MaLR 8 373 -2 344 294 43 0 chrX 14749079 14749171 -147850759 - L2 LINE L2 -11 3302 3207 204 97 0 0 chrX 14749627 14749658 -147850272 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 1024 182 57 54 chrX 14750577 14750866 -147849064 - MER47B DNA MER2_type 0 418 26 231 146 0 0 chrX 14750874 14750915 -147849015 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 963 223 117 31 chrX 14751084 14751724 -147848206 - LTR50 LTR ERVL -16 779 2 313 291 90 38 chrX 14752148 14752437 -147847493 + L1M4 LINE L1 4075 4378 -1768 847 269 4 18 chrX 14752606 14752833 -147847097 + MER58A DNA MER1_type 1 224 0 499 168 0 28 chrX 14753773 14753880 -147846050 + MLT1C LTR MaLR 362 465 -2 315 0 0 0 chrX 14754059 14754094 -147845836 + (CA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chrX 14755194 14755217 -147844713 + AT_rich Low_complexity Low_complexity 1 23 0 358 254 107 45 chrX 14755406 14755583 -147844347 - L1ME4a LINE L1 -3 6118 5931 207 314 0 0 chrX 14756461 14756547 -147843383 + T-rich Low_complexity Low_complexity 1 86 0 1199 108 34 0 chrX 14756896 14757072 -147842858 - L1PA10 LINE L1 -2 6166 5985 5556 101 49 3 chrX 14757072 14758313 -147841617 - L1PA10 LINE L1 -418 5750 4464 672 271 37 7 chrX 14758323 14758596 -147841334 - L1ME4a LINE L1 -239 5882 5602 1719 185 66 46 chrX 14758679 14759132 -147840798 - L1ME3 LINE L1 -101 6061 5600 482 284 102 10 chrX 14759798 14759995 -147839935 + MIR SINE MIR 21 235 -27 267 349 118 33 chrX 14760250 14760402 -147839528 + L2 LINE L2 3101 3265 -7 954 185 11 6 chrX 14761227 14761405 -147838525 + MER63A DNA MER1_type 1 179 -31 1207 229 88 37 chrX 14762003 14762435 -147837495 + LTR16A1 LTR ERVL 4 457 0 21 0 0 0 chrX 14763018 14763039 -147836891 + AT_rich Low_complexity Low_complexity 1 21 0 611 229 74 57 chrX 14763164 14763643 -147836287 + LTR33A LTR ERVL 1 495 -28 1053 143 68 13 chrX 14763722 14763959 -147835971 + MER33 DNA MER1_type 61 310 -14 1671 204 232 17 chrX 14764304 14764825 -147835105 - MER92B LTR ERV1 0 636 4 195 69 0 0 chrX 14765764 14765793 -147834137 + (GA)n Simple_repeat Simple_repeat 2 30 0 322 266 78 0 chrX 14766408 14766536 -147833394 - L1ME4a LINE L1 -31 6090 5953 253 216 21 0 chrX 14766604 14766662 -147833268 - MER5B DNA MER1_type 0 178 126 893 148 49 12 chrX 14766729 14766891 -147833039 + MER5B DNA MER1_type 7 174 -4 714 194 0 8 chrX 14766955 14767079 -147832851 + FLAM_A SINE Alu 4 126 -7 707 226 34 34 chrX 14767390 14767567 -147832363 + MER5B DNA MER1_type 1 177 -1 7264 40 16 0 chrX 14767595 14768543 -147831387 - L1PA6 LINE L1 -3 6151 5207 555 239 159 6 chrX 14768548 14768711 -147831219 + MER5A DNA MER1_type 1 188 -1 275 83 0 0 chrX 14768916 14768964 -147830966 - L1MA3 LINE L1 0 6305 6258 1800 121 62 64 chrX 14769369 14769824 -147830106 - THE1C LTR MaLR 0 428 1 258 263 26 13 chrX 14770405 14770481 -147829449 - MIR SINE MIR -87 175 99 476 285 136 8 chrX 14771506 14771748 -147828182 - L2 LINE L2 -91 3222 2950 1769 159 37 62 chrX 14771755 14771798 -147828132 + LTR37A LTR ERV1 5 48 -378 981 204 18 36 chrX 14771798 14772018 -147827912 + MER20 DNA MER1_type 1 216 -3 1769 159 37 62 chrX 14772018 14772407 -147827523 + LTR37A LTR ERV1 48 426 0 881 215 100 51 chrX 14772493 14772804 -147827126 + MLT1A1 LTR MaLR 1 326 -39 374 298 7 28 chrX 14772805 14772946 -147826984 - L2 LINE L2 -674 2640 2503 1115 185 77 7 chrX 14772948 14773235 -147826695 + MER33 DNA MER1_type 1 307 -17 239 287 61 61 chrX 14773541 14773656 -147826274 + MIR3 SINE MIR 12 126 -82 212 248 147 64 chrX 14773688 14773797 -147826133 + L2 LINE L2 3154 3271 -1 256 273 0 15 chrX 14773814 14773880 -147826050 + MIR SINE MIR 86 150 -112 964 237 147 100 chrX 14773880 14774403 -147825527 - MER50 LTR ERV1 -23 711 147 1906 98 9 89 chrX 14774403 14774511 -147825419 - AluSg SINE Alu -2 308 193 2542 78 0 0 chrX 14774511 14774820 -147825110 - AluY SINE Alu -1 310 2 1906 98 9 89 chrX 14774820 14775036 -147824894 - AluSg SINE Alu -117 193 10 964 237 147 100 chrX 14775036 14775191 -147824739 - MER50 LTR ERV1 -587 147 1 190 299 28 84 chrX 14775191 14775256 -147824674 + MIR SINE MIR 146 204 -58 1854 186 79 20 chrX 14775256 14775697 -147824233 - MLT1C LTR MaLR 0 467 1 190 299 28 84 chrX 14775697 14775738 -147824192 + MIR SINE MIR 204 246 -16 464 210 80 0 chrX 14775806 14775906 -147824024 + MER58B DNA MER1_type 203 310 -31 2192 104 7 14 chrX 14775907 14776204 -147823726 - AluSx SINE Alu -17 295 1 606 237 199 6 chrX 14776254 14776410 -147823520 + MER5A DNA MER1_type 4 189 0 228 290 71 13 chrX 14776584 14776739 -147823191 - L1MC/D LINE L1 -1890 5918 5755 3911 22 0 4 chrX 14777317 14777774 -147822156 + L1PA3 LINE L1 5698 6152 -3 30 0 0 0 chrX 14777774 14777804 -147822126 + AT_rich Low_complexity Low_complexity 1 30 0 617 271 81 55 chrX 14778020 14778404 -147821526 - MLT1K LTR MaLR 0 588 195 458 278 272 0 chrX 14778421 14778590 -147821340 - MIR SINE MIR -13 249 35 387 285 52 17 chrX 14779779 14779951 -147819979 + MER5B DNA MER1_type 1 178 0 1629 245 114 16 chrX 14781043 14781575 -147818355 - MER77 LTR ERV1 -5 600 40 197 327 109 55 chrX 14781680 14781900 -147818030 - MIR SINE MIR -17 245 14 213 39 0 0 chrX 14782740 14782766 -147817164 + (A)n Simple_repeat Simple_repeat 1 26 0 996 268 10 3 chrX 14783069 14783364 -147816566 + L1MC4a LINE L1 5619 5915 -1893 2244 112 10 0 chrX 14783396 14783691 -147816239 + AluSg SINE Alu 1 298 -12 21 0 0 0 chrX 14783838 14783859 -147816071 + AT_rich Low_complexity Low_complexity 1 21 0 258 103 0 0 chrX 14783865 14783904 -147816026 + L1MB5 LINE L1 6028 6066 -108 361 236 0 0 chrX 14783909 14783981 -147815949 - MLT1D LTR MaLR -96 409 338 1563 114 20 4 chrX 14783982 14784228 -147815702 + THE1C LTR MaLR 1 250 -125 6269 45 18 21 chrX 14984234 14985053 -147614877 + SVA Other Other 575 1390 0 25 0 0 0 chrX 14985053 14985078 -147614852 + AT_rich Low_complexity Low_complexity 1 25 0 1867 155 0 26 chrX 14985955 14986265 -147613665 - AluJb SINE Alu -10 302 1 3413 191 53 16 chrX 14986297 14986752 -147613178 - L1MA9 LINE L1 -48 6264 5768 441 0 0 0 chrX 14986752 14986801 -147613129 + (TG)n Simple_repeat Simple_repeat 2 50 0 3413 191 53 16 chrX 14986801 14987102 -147612828 - L1MA9 LINE L1 -544 5768 5480 3624 39 0 3 chrX 14987312 14987750 -147612180 - L1PA7 LINE L1 -20 6134 5700 444 271 17 68 chrX 14987748 14987984 -147611946 - L1MC5 LINE L1 -34 7927 7704 * 2159 79 10 39 chrX 14987985 14988290 -147611640 - AluSc SINE Alu -13 296 1 539 229 42 36 chrX 14988401 14988567 -147611363 - L1MC5 LINE L1 -14 7947 7781 1249 140 7 101 chrX 14988614 14988833 -147611097 - L1MB5 LINE L1 -8 6166 5977 1543 188 3 42 chrX 14988833 14989141 -147610789 + AluJo SINE Alu 7 302 -10 1249 140 7 101 chrX 14989141 14989199 -147610731 - L1MB5 LINE L1 -197 5977 5915 2061 216 36 57 chrX 14989207 14989662 -147610268 - L1MC5 LINE L1 -182 7779 7341 1490 146 112 10 chrX 14989662 14989956 -147609974 + MER33 DNA MER1_type 1 324 0 2061 216 36 57 chrX 14989956 14990184 -147609746 - L1MC5 LINE L1 -620 7341 7110 1275 171 23 85 chrX 14990186 14990491 -147609439 + AluJo SINE Alu 20 305 -7 420 218 20 0 chrX 14990504 14990605 -147609325 - L1MC5 LINE L1 -856 7105 7003 1751 148 43 4 chrX 14990635 14990912 -147609018 + AluJb SINE Alu 1 288 -24 4954 73 19 18 chrX 14991016 14991702 -147608228 - SVA Other Other -683 703 17 2453 109 23 0 chrX 14991913 14992262 -147607668 - MER46B DNA MER2_type -4 232 1 1425 203 114 3 chrX 14992593 14992899 -147607031 + MER58B DNA MER1_type 1 340 -1 1667 171 44 0 chrX 14992956 14993231 -147606699 + AluJb SINE Alu 1 287 -25 6097 58 9 5 chrX 14993403 14994165 -147605765 - SVA Other Other 0 1386 622 212 225 0 0 chrX 14994270 14994310 -147605620 + C-rich Low_complexity Low_complexity 1 40 0 637 249 126 52 chrX 14995097 14995462 -147604468 + MLT1J2 LTR MaLR 59 450 0 1714 216 202 6 chrX 14995874 14996384 -147603546 + L1ME3A LINE L1 5551 6160 -10 373 194 207 16 chrX 14996729 14996837 -147603093 + FLAM_A SINE Alu 11 116 -17 658 74 0 3 chrX 14996924 14997155 -147602775 + AluSx SINE Alu 1 300 -10 2305 82 0 17 chrX 14997395 14997688 -147602242 + AluSg SINE Alu 1 288 -22 2363 95 3 0 chrX 14997745 14998051 -147601879 + AluSx SINE Alu 1 307 -5 1260 203 14 17 chrX 14998297 14998593 -147601337 - L1MB8 LINE L1 0 6178 5884 2111 103 10 3 chrX 14998594 14998884 -147601046 - AluSx SINE Alu -19 293 2 2029 116 32 3 chrX 14999497 14999782 -147600148 - AluSq SINE Alu -20 293 1 2212 85 17 17 chrX 14999782 15000074 -147599856 - AluSc SINE Alu -16 293 1 2344 106 0 13 chrX 15000131 15000442 -147599488 - AluSx SINE Alu -5 307 1 2359 96 7 0 chrX 15000522 15000825 -147599105 - AluSg SINE Alu -5 305 1 2258 109 7 0 chrX 15000825 15001129 -147598801 - AluSp SINE Alu -2 311 6 2307 147 67 21 chrX 15001170 15001493 -147598437 + L1M4 LINE L1 5226 5579 -599 1501 179 37 24 chrX 15001493 15001789 -147598141 + AluJo SINE Alu 1 300 -12 2307 147 67 21 chrX 15001789 15001938 -147597992 + L1M4 LINE L1 5579 5720 -458 2448 58 7 0 chrX 15001939 15002231 -147597699 + AluY SINE Alu 1 294 -17 1749 141 6 42 chrX 15002603 15002916 -147597014 - AluY SINE Alu -9 302 1 1569 179 64 67 chrX 15003034 15003425 -147596505 + L1MC4 LINE L1 7515 7904 -138 3275 135 146 8 chrX 15003448 15004050 -147595880 + LTR34 LTR ERV1 13 697 -2 192 40 0 0 chrX 15004050 15004075 -147595855 + (GA)n Simple_repeat Simple_repeat 2 26 0 519 173 78 2 chrX 15004083 15004201 -147595729 + L1MC4 LINE L1 7859 8036 -6 1730 176 150 21 chrX 15004394 15004672 -147595258 + MLT1F1 LTR MaLR 138 479 -88 4008 125 17 40 chrX 15004672 15005322 -147594608 + MER41B LTR ERV1 1 635 0 1730 176 150 21 chrX 15005322 15005424 -147594506 + MLT1F1 LTR MaLR 479 567 0 3161 129 23 0 chrX 15005902 15006383 -147593547 - L1PA16 LINE L1 -9 6157 5666 1201 239 85 31 chrX 15007059 15007482 -147592448 - LTR16A1 LTR ERVL 0 457 12 1095 254 146 23 chrX 15007516 15007914 -147592016 + MLT1J2 LTR MaLR 1 447 -3 246 128 0 0 chrX 15008497 15008536 -147591394 + (CA)n Simple_repeat Simple_repeat 2 40 0 1948 146 20 0 chrX 15008596 15008891 -147591039 - AluJo SINE Alu -11 301 1 2056 119 17 0 chrX 15008920 15009213 -147590717 + AluSg SINE Alu 1 298 -12 392 179 11 0 chrX 15009450 15009504 -147590426 + GA-rich Low_complexity Low_complexity 1 58 -38 2852 86 0 0 chrX 15009504 15009866 -147590064 - THE1B LTR MaLR -2 362 1 392 179 11 0 chrX 15009866 15009906 -147590024 + GA-rich Low_complexity Low_complexity 58 96 0 1134 126 11 49 chrX 15010225 15010354 -147589576 - Tigger3(Golem) DNA MER2_type 0 3038 2916 2356 127 50 75 chrX 15010354 15010759 -147589171 + MER65A LTR ERV1 1 395 -50 1853 164 3 25 chrX 15010759 15011076 -147588854 - AluJb SINE Alu -2 310 1 2356 127 50 75 chrX 15011076 15011126 -147588804 + MER65A LTR ERV1 395 445 0 1134 126 11 49 chrX 15011126 15011179 -147588751 - Tigger3(Golem) DNA MER2_type -122 2916 2863 2555 142 47 0 chrX 15011181 15011590 -147588340 - MSTA LTR MaLR 0 428 1 10097 154 22 3 chrX 15011590 15013210 -147586720 - MSTA-int LTR MaLR 0 1651 1 361 214 38 69 chrX 15014222 15014353 -147585577 + MIR SINE MIR 93 219 -43 2059 149 10 0 chrX 15014613 15014922 -147585008 - AluSx SINE Alu 0 312 1 847 146 0 42 chrX 15014939 15015083 -147584847 - FLAM_C SINE Alu -5 138 1 4775 113 38 11 chrX 15015617 15015796 -147584134 - L1MA4 LINE L1 -4 6296 6123 2037 137 10 3 chrX 15015796 15016089 -147583841 + AluJb SINE Alu 1 295 -17 4775 113 38 11 chrX 15016089 15016672 -147583258 - L1MA4 LINE L1 -177 6123 5513 5588 126 11 7 chrX 15016679 15017666 -147582264 - L1MA4 LINE L1 -743 5403 4469 412 286 0 13 chrX 15017842 15017996 -147581934 - THE1B LTR MaLR -34 330 179 315 0 0 0 chrX 15020135 15020170 -147579760 + (TGG)n Simple_repeat Simple_repeat 1 35 0 2400 89 0 0 chrX 15020470 15020773 -147579157 - AluSx SINE Alu -9 303 1 4804 128 31 26 chrX 15020781 15021581 -147578349 - L1MC1 LINE L1 0 6333 5530 384 281 42 0 chrX 15021661 15021757 -147578173 - L2 LINE L2 -25 3288 3189 1889 154 14 3 chrX 15021832 15022125 -147577805 + AluJo SINE Alu 1 296 -16 1478 154 62 26 chrX 15022450 15022566 -147577364 + AluJo SINE Alu 1 111 -197 540 0 0 0 chrX 15022566 15022626 -147577304 + (CA)n Simple_repeat Simple_repeat 2 61 0 1478 154 62 26 chrX 15022626 15022807 -147577123 + AluJo SINE Alu 111 308 0 2319 65 7 7 chrX 15023147 15023453 -147576477 - L1PA7 LINE L1 -4 6150 5845 1528 111 202 4 chrX 15023907 15024160 -147575770 + AluSq SINE Alu 1 303 -10 447 35 0 0 chrX 15024160 15024217 -147575713 + (CA)n Simple_repeat Simple_repeat 2 58 0 204 219 0 0 chrX 15024580 15024621 -147575309 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1891 161 3 22 chrX 15025006 15025323 -147574607 - AluJb SINE Alu -1 311 1 440 296 28 23 chrX 15025333 15025509 -147574421 - L1MC5 LINE L1 -36 7925 7749 2366 94 0 7 chrX 15025869 15026176 -147573754 - AluSx SINE Alu -7 305 1 319 253 121 10 chrX 15026304 15026403 -147573527 + MER81 DNA DNA 3 112 -2 1808 206 228 8 chrX 15026417 15026903 -147573027 - MLT1E LTR MaLR 0 593 1 589 148 71 90 chrX 15027197 15027352 -147572578 + Charlie4 DNA MER1_type 1 152 -1809 1497 156 0 0 chrX 15027353 15027578 -147572352 - AluJb SINE Alu 0 312 88 1886 162 0 7 chrX 15028190 15028487 -147571443 + AluSx SINE Alu 1 295 -17 1076 197 10 5 chrX 15028826 15029019 -147570911 - MER20 DNA MER1_type -3 216 23 292 163 23 70 chrX 15029071 15029157 -147570773 - MIR SINE MIR -109 153 72 566 246 99 53 chrX 15029531 15029918 -147570012 - LTR33 LTR ERVL -110 413 1 1658 178 17 7 chrX 15030166 15030458 -147569472 - AluJb SINE Alu -17 295 1 9071 176 27 28 chrX 15030744 15031143 -147568787 + L1M2 LINE L1 3502 3900 -2412 1901 153 3 13 chrX 15031143 15031451 -147568479 + AluJo SINE Alu 1 305 -7 9071 176 27 28 chrX 15031451 15033160 -147566770 + L1M2 LINE L1 3900 5606 -706 904 118 0 16 chrX 15033526 15033653 -147566277 - FLAM_C SINE Alu -18 125 1 187 206 0 0 chrX 15035088 15035122 -147564808 - L2 LINE L2 -15 3298 3265 2291 81 7 7 chrX 15035183 15035481 -147564449 - AluY SINE Alu -13 298 1 2224 103 3 0 chrX 15035541 15035851 -147564079 - AluY SINE Alu 0 311 1 2346 59 7 19 chrX 15036120 15036427 -147563503 + AluY SINE Alu 1 303 -8 2486 60 0 10 chrX 15036468 15036766 -147563164 + AluY SINE Alu 1 295 -16 241 299 0 0 chrX 15037032 15037099 -147562831 + A-rich Low_complexity Low_complexity 4 70 0 455 200 10 30 chrX 15037243 15037343 -147562587 - MER5A DNA MER1_type -83 106 9 2352 76 3 0 chrX 15037608 15037896 -147562034 + AluSp SINE Alu 21 309 -4 326 296 53 35 chrX 15038305 15038474 -147561456 - L1M4 LINE L1 -1437 4709 4538 1278 199 103 7 chrX 15038498 15038769 -147561161 + AluJo SINE Alu 1 297 -5 853 258 77 67 chrX 15038784 15039047 -147560883 + L1ME LINE L1 4943 5202 -960 2153 105 0 30 chrX 15039047 15039351 -147560579 + AluSg SINE Alu 1 295 -15 853 258 77 67 chrX 15039351 15039930 -147560000 + L1ME LINE L1 5202 5786 -376 554 128 0 43 chrX 15039938 15040032 -147559898 - AluJ/FRAM SINE Alu 0 312 223 692 209 163 0 chrX 15040109 15040281 -147559649 + MER58C DNA MER1_type 16 215 0 509 137 116 0 chrX 15040333 15040428 -147559502 - MER3 DNA MER1_type -1 208 103 2001 116 14 7 chrX 15041062 15041354 -147558576 + AluSp SINE Alu 2 295 -18 1886 107 0 0 chrX 15041357 15041601 -147558329 + AluSq SINE Alu 1 244 -69 261 221 159 97 chrX 15042099 15042244 -147557686 + MIR SINE MIR 36 189 -73 21 0 0 0 chrX 15045147 15045168 -147554762 + AT_rich Low_complexity Low_complexity 1 21 0 504 0 0 0 chrX 15045241 15045297 -147554633 + (TG)n Simple_repeat Simple_repeat 2 57 0 736 205 0 0 chrX 15045298 15045415 -147554515 - FLAM_C SINE Alu -15 118 2 758 222 114 10 chrX 15045434 15045562 -147554368 - L1MC5 LINE L1 -175 7786 7673 1476 146 165 4 chrX 15045562 15045816 -147554114 + AluJo SINE Alu 1 295 -7 758 222 114 10 chrX 15045816 15045993 -147553937 - L1MC5 LINE L1 -288 7673 7449 279 286 89 62 chrX 15046389 15046613 -147553317 - MIR SINE MIR 0 262 33 180 0 0 0 chrX 15048035 15048055 -147551875 + (CA)n Simple_repeat Simple_repeat 2 21 0 577 241 9 0 chrX 15048939 15049051 -147550879 - MER81 DNA DNA 0 114 2 293 169 13 91 chrX 15049164 15049241 -147550689 + MER116 DNA Mariner 1 71 -9 1750 118 53 15 chrX 15049852 15050114 -147549816 + AluJb SINE Alu 6 277 -35 278 323 19 45 chrX 15050580 15050735 -147549195 + MIR3 SINE MIR 40 190 -18 211 255 0 0 chrX 15052208 15052255 -147547675 + MIR SINE MIR 212 258 -4 221 234 159 28 chrX 15052295 15052402 -147547528 + MIR SINE MIR 47 167 -95 598 187 73 20 chrX 15054066 15054216 -147545714 - MER5A DNA MER1_type 0 189 32 2183 89 14 3 chrX 15054346 15054638 -147545292 + AluSg SINE Alu 1 295 -15 2282 82 0 0 chrX 15054780 15055060 -147544870 + AluSc SINE Alu 13 292 -17 370 193 33 31 chrX 15059945 15060059 -147539871 - L1MC4 LINE L1 -3 8039 7860 286 179 119 0 chrX 15060585 15060652 -147539278 + Charlie2a DNA MER1_type 1513 1587 -1275 1876 148 0 0 chrX 15060715 15060992 -147538938 + AluJb SINE Alu 16 292 -20 2130 66 11 11 chrX 15061044 15061317 -147538613 + AluSc SINE Alu 1 273 -36 3830 145 67 26 chrX 15062076 15062760 -147537170 + L1MB7 LINE L1 5457 6168 -16 357 137 51 0 chrX 15063526 15063643 -147536287 + (TA)n Simple_repeat Simple_repeat 1 123 0 441 0 0 0 chrX 15063785 15063834 -147536096 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 26 30 0 0 chrX 15063904 15063937 -147535993 + AT_rich Low_complexity Low_complexity 1 33 0 2849 106 37 0 chrX 15063951 15064358 -147535572 + L1MB2 LINE L1 5749 6170 -1 6074 106 13 11 chrX 15064527 15065439 -147534491 - L1MA4 LINE L1 -6 6294 5381 3343 127 2 2 chrX 15065409 15065922 -147534008 - L1MA4 LINE L1 -1143 5003 4491 * 2033 164 0 0 chrX 15065935 15066245 -147533685 - AluSx SINE Alu -2 310 1 812 320 81 17 chrX 15067259 15067736 -147532194 - MLT1K LTR MaLR -19 569 27 4355 114 16 22 chrX 15068088 15068714 -147531216 - L1MA4A LINE L1 -12 6291 5663 189 74 0 0 chrX 15068714 15068741 -147531189 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1825 164 3 3 chrX 15068741 15069027 -147530903 - AluJo SINE Alu -26 286 1 4355 114 16 22 chrX 15069027 15069068 -147530862 - L1MA4A LINE L1 -638 5665 5627 26 0 0 0 chrX 15069151 15069177 -147530753 + AT_rich Low_complexity Low_complexity 1 26 0 912 247 50 70 chrX 15069310 15069711 -147530219 + HAL1 LINE L1 4 396 -2111 1382 228 36 31 chrX 15069719 15069999 -147529931 - LTR37B LTR ERV1 -45 423 139 2502 56 0 7 chrX 15069999 15070304 -147529626 + AluY SINE Alu 3 305 -6 1382 228 36 31 chrX 15070304 15070444 -147529486 - LTR37B LTR ERV1 -329 139 1 1694 11 16 0 chrX 15070478 15070686 -147529244 + L1PA3 LINE L1 5949 6159 0 2266 172 14 3 chrX 15071190 15071551 -147528379 - MLT1A1 LTR MaLR 0 365 1 344 313 119 6 chrX 15071984 15072160 -147527770 - L2 LINE L2 -1237 2077 1882 1614 195 0 3 chrX 15072394 15072698 -147527232 - AluJo SINE Alu 0 303 1 554 253 32 13 chrX 15072748 15072906 -147527024 - MER110 LTR ERV1 -15 476 316 390 191 24 12 chrX 15073080 15073164 -147526766 - LTR37B LTR ERV1 -383 85 1 2126 122 7 3 chrX 15073313 15073609 -147526321 + AluSq SINE Alu 1 297 -16 374 167 26 0 chrX 15073631 15073709 -147526221 + GA-rich Low_complexity Low_complexity 1 80 0 249 56 19 56 chrX 15073879 15073933 -147525997 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 236 307 27 0 chrX 15074025 15074100 -147525830 + MLT1K LTR MaLR 512 588 0 1750 160 6 45 chrX 15074471 15074784 -147525146 - AluJb SINE Alu -11 301 1 725 92 0 10 chrX 15074847 15074945 -147524985 + HY3 scRNA scRNA 1 97 -4 31 0 0 0 chrX 15074947 15074978 -147524952 + AT_rich Low_complexity Low_complexity 1 31 0 219 344 0 0 chrX 15074991 15075055 -147524875 - L2 LINE L2 -83 3189 3126 2057 220 31 43 chrX 15075136 15075378 -147524552 + L1ME3 LINE L1 5577 5820 -342 2254 107 7 0 chrX 15075378 15075677 -147524253 + AluSc SINE Alu 1 301 -8 2057 220 31 43 chrX 15075677 15075921 -147524009 + L1ME3 LINE L1 5820 6059 -103 2230 102 7 0 chrX 15075921 15076216 -147523714 - AluSx SINE Alu -15 297 1 2057 220 31 43 chrX 15076216 15076268 -147523662 + L1ME3 LINE L1 6059 6110 -52 514 111 0 0 chrX 15076272 15076344 -147523586 - MADE1 DNA Mariner 0 80 9 463 209 0 11 chrX 15076369 15076460 -147523470 + LTR16B LTR ERVL 373 462 -2 * 501 209 68 41 chrX 15076460 15076658 -147523272 - MLT1H LTR MaLR -326 216 1 1771 147 3 29 chrX 15077126 15077438 -147522492 + AluJo SINE Alu 1 304 -8 2568 70 3 0 chrX 15077439 15077751 -147522179 + AluSp SINE Alu 1 313 0 3031 197 49 57 chrX 15078281 15078318 -147521612 - L1ME2 LINE L1 -2 6162 6126 2025 131 7 0 chrX 15078318 15078643 -147521287 - AluJb SINE Alu 0 312 1 3031 197 49 57 chrX 15078643 15078731 -147521199 - L1ME2 LINE L1 -38 6126 6039 1937 140 10 3 chrX 15078731 15079024 -147520906 - AluJb SINE Alu -17 295 1 3031 197 49 57 chrX 15079024 15079402 -147520528 - L1ME2 LINE L1 -125 6039 5660 239 0 0 31 chrX 15079402 15079434 -147520496 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3031 197 49 57 chrX 15079434 15079542 -147520388 - L1ME2 LINE L1 -504 5660 5553 1898 79 0 17 chrX 15079542 15079783 -147520147 - AluSx SINE Alu -18 294 58 3031 197 49 57 chrX 15079783 15079999 -147519931 - L1ME2 LINE L1 -611 5553 5338 459 231 196 0 chrX 15081046 15081189 -147518741 - MER5A DNA MER1_type -7 182 12 1612 168 51 0 chrX 15081260 15081534 -147518396 - AluJb SINE Alu -24 288 1 623 99 0 40 chrX 15081540 15081641 -147518289 - L1MA4A LINE L1 -6 6297 6201 359 85 0 0 chrX 15081643 15081690 -147518240 - L1MA4 LINE L1 -56 6244 6198 1256 91 61 30 chrX 15081692 15081825 -147518105 - L1MA4 LINE L1 -56 6244 6102 2461 129 65 45 chrX 15081825 15082048 -147517882 - MSTB LTR MaLR 0 426 190 2076 128 3 3 chrX 15082048 15082345 -147517585 - AluSx SINE Alu -15 297 1 2461 129 65 45 chrX 15082345 15082539 -147517391 - MSTB LTR MaLR -236 190 1 1256 91 61 30 chrX 15082539 15082603 -147517327 - L1MA4 LINE L1 -198 6102 6041 314 241 92 64 chrX 15082770 15082911 -147517019 + MLT1L LTR MaLR 168 312 -303 1860 146 50 0 chrX 15082918 15083199 -147516731 - AluJo SINE Alu -17 295 1 2338 96 0 7 chrX 15083780 15084083 -147515847 - AluSx SINE Alu -11 301 1 382 171 0 110 chrX 15084195 15084300 -147515630 + L1M1 LINE L1 11 546 -6943 2099 92 33 0 chrX 15084301 15084573 -147515357 + AluSx SINE Alu 1 281 -31 186 43 0 0 chrX 15084575 15084598 -147515332 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 227 352 0 28 chrX 15084607 15084678 -147515252 - L2 LINE L2 -79 3193 3125 1983 110 38 0 chrX 15084717 15085008 -147514922 + AluJo SINE Alu 1 302 -10 320 174 111 0 chrX 15085667 15085755 -147514175 + L1MC/D LINE L1 5600 5696 -642 410 325 89 34 chrX 15085782 15086240 -147513690 + L1MB8 LINE L1 5297 5782 -380 2356 79 3 3 chrX 15086600 15086892 -147513038 + AluSp SINE Alu 1 292 -21 1852 123 0 55 chrX 15087087 15087395 -147512535 - AluJb SINE Alu -21 291 1 1056 175 76 22 chrX 15087528 15087792 -147512138 + L1MB8 LINE L1 5840 6115 -63 459 159 0 0 chrX 15087842 15087911 -147512019 + L1MB7 LINE L1 6108 6176 -8 824 118 7 44 chrX 15088973 15089109 -147510821 - FAM SINE Alu -13 172 42 903 136 30 0 chrX 15089732 15089864 -147510066 - AluJo SINE Alu -176 136 1 983 159 92 57 chrX 15090265 15090346 -147509584 + MER46A DNA MER2_type 2 79 -2652 1714 138 15 90 chrX 15090346 15090680 -147509250 + AluSx SINE Alu 3 311 -1 983 159 92 57 chrX 15090680 15090825 -147509105 + MER46A DNA MER2_type 79 236 0 180 318 127 0 chrX 15091061 15091171 -147508759 + L2 LINE L2 3145 3268 -4 889 201 130 0 chrX 15092920 15093089 -147506841 - AluJo SINE Alu -111 201 11 1919 110 45 14 chrX 15093419 15093710 -147506220 - AluSx SINE Alu -12 300 1 1991 118 14 14 chrX 15094566 15094862 -147505068 - AluSx SINE Alu -16 296 1 1833 156 3 0 chrX 15095245 15095533 -147504397 + AluJb SINE Alu 21 309 -3 4183 153 58 64 chrX 15095534 15095758 -147504172 + L1MB7 LINE L1 5195 5419 -765 2010 146 0 0 chrX 15095758 15096083 -147503847 + AluSx SINE Alu 1 325 0 4183 153 58 64 chrX 15096083 15096788 -147503142 + L1MB7 LINE L1 5419 6130 -54 779 308 53 30 chrX 15097712 15098073 -147501857 + MER68 LTR ERV1 190 558 -4 247 271 225 8 chrX 15099255 15099384 -147500546 - MER102a DNA MER1_type 0 330 174 2192 98 47 0 chrX 15099916 15100213 -147499717 + AluY SINE Alu 1 311 0 2178 129 0 0 chrX 15100401 15100712 -147499218 + AluSx SINE Alu 1 311 -1 308 214 101 22 chrX 15100766 15100855 -147499075 + L1MC4a LINE L1 5541 5636 -528 1651 159 32 18 chrX 15100873 15101156 -147498774 - AluJo SINE Alu -25 287 1 667 278 149 14 chrX 15101531 15101819 -147498111 + MER68 LTR ERV1 229 555 -7 819 180 31 0 chrX 15102063 15102191 -147497739 - FLAM_C SINE Alu -10 133 2 350 248 187 75 chrX 15102193 15102407 -147497523 - L1MC/D LINE L1 -1988 5820 5583 187 98 24 73 chrX 15103146 15103187 -147496743 + MIR SINE MIR 106 144 -118 2308 83 10 26 chrX 15103751 15104063 -147495867 + AluSp SINE Alu 5 311 -2 295 253 40 30 chrX 15104063 15104162 -147495768 + L3 LINE CR1 900 999 -578 797 200 0 8 chrX 15104212 15104342 -147495588 - FLAM_A SINE Alu -4 129 1 784 224 148 76 chrX 15104462 15104739 -147495191 + AluJo SINE Alu 2 298 -4 21 0 0 0 chrX 15104759 15104780 -147495150 + AT_rich Low_complexity Low_complexity 1 21 0 183 306 127 30 chrX 15104831 15104965 -147494965 + L3 LINE CR1 1268 1414 -163 445 271 89 26 chrX 15105194 15105463 -147494467 + L1MC4a LINE L1 5610 5895 -1913 2319 76 7 0 chrX 15105768 15106095 -147493835 + AluSg SINE Alu 19 347 0 277 323 166 22 chrX 15106621 15106844 -147493086 - MIR SINE MIR -6 256 2 1782 121 10 49 chrX 15107184 15107489 -147492441 - AluSx SINE Alu -19 293 1 734 221 84 13 chrX 15107597 15107751 -147492179 - FRAM SINE Alu -1 165 1 532 265 32 22 chrX 15107837 15108022 -147491908 + MIR SINE MIR 76 262 0 387 224 35 35 chrX 15108164 15108280 -147491650 + L1ME3A LINE L1 6055 6170 0 1041 101 7 0 chrX 15109129 15109267 -147490663 - AluSq/x SINE Alu -173 139 1 282 266 110 57 chrX 15109510 15109573 -147490357 - L1ME4a LINE L1 -86 6035 5977 2343 85 0 16 chrX 15109573 15109878 -147490052 - AluSq SINE Alu -13 300 1 282 266 110 57 chrX 15109878 15109982 -147489948 - L1ME4a LINE L1 -144 5977 5880 2048 153 0 0 chrX 15109982 15110283 -147489647 + AluSx SINE Alu 1 301 -11 282 266 110 57 chrX 15110283 15110396 -147489534 - L1ME4a LINE L1 -241 5880 5739 1849 137 33 13 chrX 15112795 15113095 -147486835 + AluJb SINE Alu 1 306 -6 344 290 35 28 chrX 15113239 15113384 -147486546 + L2 LINE L2 2534 2679 -635 2084 108 6 55 chrX 15113408 15113733 -147486197 - AluSx SINE Alu -3 309 1 836 335 73 32 chrX 15114027 15114778 -147485152 - L2 LINE L2 -24 3289 2503 255 61 0 0 chrX 15114868 15114901 -147485029 + (A)n Simple_repeat Simple_repeat 1 33 0 2281 97 3 10 chrX 15114929 15115240 -147484690 + AluSg SINE Alu 1 309 -1 2037 93 14 10 chrX 15115373 15115662 -147484268 + AluSq SINE Alu 1 290 -23 180 97 0 0 chrX 15115667 15115698 -147484232 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 460 270 7 47 chrX 15115708 15115856 -147484074 - L2 LINE L2 -845 2469 2328 301 306 33 25 chrX 15116032 15116153 -147483777 - MIR SINE MIR -84 178 57 683 229 167 5 chrX 15116209 15116419 -147483511 + LTR50 LTR ERVL 1 244 -551 413 152 130 0 chrX 15116426 15116518 -147483412 + LTR50 LTR ERVL 498 601 -194 348 195 98 0 chrX 15116553 15116635 -147483295 + LTR50 LTR ERVL 706 795 0 220 286 65 13 chrX 15116799 15116876 -147483054 - L2 LINE L2 -33 3280 3200 288 0 0 0 chrX 15116932 15116964 -147482966 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2204 90 7 0 chrX 15116979 15117268 -147482662 - AluSx SINE Alu -20 292 2 1004 159 0 6 chrX 15117283 15117440 -147482490 - AluJb SINE Alu -24 288 133 291 376 0 57 chrX 15117440 15117581 -147482349 - L2 LINE L2 -177 3095 2963 2276 126 0 0 chrX 15117601 15117911 -147482019 + AluSx SINE Alu 2 311 -1 683 177 85 8 chrX 15117928 15118058 -147481872 + MER5B DNA MER1_type 33 172 -6 279 0 0 0 chrX 15118110 15118141 -147481789 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 843 136 0 8 chrX 15118160 15118278 -147481652 + FLAM_C SINE Alu 2 118 -15 22 56 0 0 chrX 15118317 15118353 -147481577 + AT_rich Low_complexity Low_complexity 1 36 0 2453 202 118 44 chrX 15118726 15118850 -147481080 - L1MD3 LINE L1 0 8042 7929 191 36 36 0 chrX 15118850 15118878 -147481052 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 2453 202 118 44 chrX 15118878 15119265 -147480665 - L1MD3 LINE L1 -113 7929 7572 1739 81 0 0 chrX 15119265 15119476 -147480454 - AluSg/x SINE Alu -17 293 83 1976 124 0 20 chrX 15119480 15119778 -147480152 - AluSx SINE Alu -20 292 1 2453 202 118 44 chrX 15119778 15119978 -147479952 - L1MD3 LINE L1 -472 7570 7284 430 188 31 10 chrX 15120327 15120423 -147479507 + L2 LINE L2 2609 2706 -608 1088 239 98 17 chrX 15120590 15120946 -147478984 + L2 LINE L2 2909 3293 -20 402 21 0 0 chrX 15120946 15120993 -147478937 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 85 0 0 chrX 15120994 15121041 -147478889 + (GA)n Simple_repeat Simple_repeat 2 48 0 577 156 37 59 chrX 15121112 15121196 -147478734 + MER69 DNA AcHobo 5 89 -1137 1889 156 3 0 chrX 15121196 15121501 -147478429 + AluJb SINE Alu 1 306 0 577 156 37 59 chrX 15121501 15121574 -147478356 + MER69 DNA AcHobo 89 203 -1023 961 273 90 31 chrX 15121594 15122158 -147477772 + MLT2F LTR ERVL 29 663 0 * 1307 223 139 32 chrX 15122158 15122434 -147477496 + MER69 DNA AcHobo 206 526 -2000 2404 98 0 0 chrX 15122434 15122731 -147477199 + AluSx SINE Alu 1 297 -15 1307 223 139 32 chrX 15122731 15122784 -147477146 + MER69 DNA AcHobo 526 572 -1954 1039 140 35 5 chrX 15122782 15122983 -147476947 + MER69 DNA AcHobo 2319 2525 -1 * 922 211 43 34 chrX 15123080 15123288 -147476642 - MER63A DNA MER1_type 0 210 1 2137 141 0 0 chrX 15123572 15123884 -147476046 - AluSx SINE Alu 0 312 1 614 184 69 46 chrX 15124084 15124258 -147475672 - MER104 DNA MER2_type -1 179 2 210 366 11 32 chrX 15124303 15124396 -147475534 - MIR SINE MIR -75 133 43 2122 88 0 69 chrX 15124590 15124910 -147475020 - AluSx SINE Alu -14 298 1 353 301 93 22 chrX 15125012 15125195 -147474735 + MIR SINE MIR 61 256 -6 879 168 76 56 chrX 15125299 15125347 -147474583 - MER3 DNA MER1_type -8 201 155 1563 165 72 7 chrX 15125347 15125638 -147474292 + AluJb SINE Alu 1 310 -2 879 168 76 56 chrX 15125638 15125786 -147474144 - MER3 DNA MER1_type -54 155 1 264 164 14 41 chrX 15126730 15126803 -147473127 - L1ME4a LINE L1 -49 6072 6002 1981 176 61 38 chrX 15127242 15127496 -147472434 - L1MB7 LINE L1 0 6184 5914 1983 84 28 39 chrX 15127496 15127806 -147472124 + AluSx SINE Alu 1 307 0 1981 176 61 38 chrX 15127806 15127977 -147471953 - L1MB7 LINE L1 -270 5914 5748 1051 191 71 0 chrX 15127978 15128203 -147471727 - L1MB7 LINE L1 -1338 4808 4568 225 233 44 22 chrX 15128202 15128292 -147471638 - L1ME4a LINE L1 -1906 5902 5811 * 1615 112 19 0 chrX 15128452 15128666 -147471264 - MER20 DNA MER1_type -1 218 1 654 265 71 25 chrX 15129097 15129335 -147470595 - MER112 DNA MER1_type -11 249 1 2168 83 0 4 chrX 15129621 15129898 -147470032 + AluY SINE Alu 18 293 -18 714 171 86 0 chrX 15129898 15130015 -147469915 + FLAM_A SINE Alu 2 128 -5 1363 198 90 7 chrX 15130443 15130731 -147469199 + AluJo SINE Alu 1 312 0 281 181 18 0 chrX 15131129 15131185 -147468745 - MIR3 SINE MIR -48 160 103 2103 117 59 61 chrX 15131187 15131596 -147468334 - L1MC2 LINE L1 0 6344 5937 2176 187 21 27 chrX 15131596 15132199 -147467731 - L1MC2 LINE L1 -743 5403 4856 649 285 56 40 chrX 15132268 15132517 -147467413 + MIR SINE MIR 5 257 -5 687 206 36 73 chrX 15132694 15132913 -147467017 + L1ME2 LINE L1 5945 6155 -9 1079 206 31 50 chrX 15132935 15133256 -147466674 + L1MC5 LINE L1 7609 7923 -38 2060 66 0 0 chrX 15133383 15133627 -147466303 - L1PA6 LINE L1 -5 6149 5906 1013 139 53 43 chrX 15133638 15133825 -147466105 - L1MD2 LINE L1 -10 6349 6161 261 0 0 0 chrX 15133832 15133861 -147466069 + (TG)n Simple_repeat Simple_repeat 2 30 0 608 29 0 0 chrX 15134032 15134100 -147465830 + U4 snRNA snRNA 1 68 -77 1390 148 21 0 chrX 15134560 15134803 -147465127 + L1MA7 LINE L1 6044 6291 0 254 290 99 8 chrX 15135323 15135454 -147464476 - L1ME4a LINE L1 -2 6119 5977 326 274 29 20 chrX 15135604 15135706 -147464224 + L2 LINE L2 3210 3312 -1 354 250 33 0 chrX 15135848 15135940 -147463990 + MIR SINE MIR 41 135 -127 319 246 123 101 chrX 15135927 15136155 -147463775 - L2 LINE L2 -30 3283 3051 * 1794 153 29 13 chrX 15136179 15136486 -147463444 + AluJb SINE Alu 1 312 0 277 202 167 12 chrX 15136520 15136604 -147463326 - MER112 DNA MER1_type -7 253 157 1228 169 187 18 chrX 15137206 15137490 -147462440 + MER58B DNA MER1_type 5 336 -5 351 227 0 0 chrX 15138786 15138914 -147461016 + G-rich Low_complexity Low_complexity 1 128 0 3541 170 40 31 chrX 15139056 15140185 -147459745 - L1MB8 LINE L1 -228 5950 4822 1819 208 108 34 chrX 15140291 15140826 -147459104 + HsTC2 DNA Tc2 1283 1857 -41 248 263 110 8 chrX 15140943 15141061 -147458869 - HAL1 LINE L1 -2331 176 47 2377 233 80 5 chrX 15141117 15141733 -147458197 - L1MC4a LINE L1 -20 7788 7146 237 221 156 0 chrX 15141828 15141905 -147458025 - MLT1J1 LTR MaLR 0 446 358 539 176 54 57 chrX 15141960 15142110 -147457820 - L1MD1 LINE L1 0 8042 6154 24 53 0 0 chrX 15142113 15142151 -147457779 + AT_rich Low_complexity Low_complexity 1 38 0 529 215 114 0 chrX 15142225 15142374 -147457556 - L1MC4a LINE L1 -1341 6467 6302 966 193 51 99 chrX 15142406 15142693 -147457237 - L1MC4 LINE L1 -238 7804 7536 1991 102 38 41 chrX 15142693 15142986 -147456944 + AluSx SINE Alu 1 292 -20 966 193 51 99 chrX 15142986 15143050 -147456880 - L1MC4 LINE L1 -506 7536 7470 5856 98 2 2 chrX 15143058 15143863 -147456067 - L1PA13 LINE L1 -19 6144 5340 604 212 53 0 chrX 15143863 15143995 -147455935 - L1MC4 LINE L1 -558 7484 7346 1089 130 46 8 chrX 15144235 15144445 -147455485 - L1MB4 LINE L1 0 6174 5964 1893 148 13 16 chrX 15145762 15146073 -147453857 + AluJo SINE Alu 1 310 -2 446 283 118 45 chrX 15146090 15146404 -147453526 - MLT1H1 LTR MaLR -2 553 217 1172 194 45 22 chrX 15148160 15148428 -147451502 + Charlie4a DNA MER1_type 4 277 -231 1096 109 12 18 chrX 15148440 15148605 -147451325 - AluSg/x SINE Alu -14 298 135 182 37 37 0 chrX 15148605 15148632 -147451298 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2227 81 14 14 chrX 15148632 15148927 -147451003 - AluSc SINE Alu -14 295 1 1065 148 42 9 chrX 15148933 15149149 -147450781 + Charlie4a DNA MER1_type 283 505 -3 2927 135 11 44 chrX 15150148 15150690 -147449240 - L1MB7 LINE L1 -32 6152 5629 822 256 99 48 chrX 15150999 15151261 -147448669 + MLT1I LTR MaLR 98 378 -31 1163 152 71 29 chrX 15151261 15151471 -147448459 + MER20 DNA MER1_type 1 219 0 822 256 99 48 chrX 15151471 15151501 -147448429 + MLT1I LTR MaLR 378 405 -4 484 295 52 43 chrX 15151757 15151823 -147448107 - MIR SINE MIR -48 214 150 1927 138 0 7 chrX 15151823 15152136 -147447794 - AluSx SINE Alu 0 311 1 484 295 52 43 chrX 15152136 15152278 -147447652 - MIR SINE MIR -112 150 3 1374 180 11 15 chrX 15152344 15152605 -147447325 - MLT1F1 LTR MaLR 0 567 308 2048 211 45 24 chrX 15152717 15153182 -147446748 - MLT1F LTR MaLR -67 475 1 636 231 19 26 chrX 15154201 15154357 -147445573 - MLT1F1 LTR MaLR -387 155 1 424 146 0 125 chrX 15156575 15156671 -147443259 - MER81 DNA DNA -30 84 1 1775 151 0 77 chrX 15156724 15157048 -147442882 - AluJo SINE Alu -13 299 1 1163 217 14 5 chrX 15157395 15157616 -147442314 - MER58A DNA MER1_type 0 224 2 667 188 0 0 chrX 15157696 15157813 -147442117 + L1M4 LINE L1 4080 4196 -1950 1254 163 30 52 chrX 15157840 15158110 -147441820 + AluJo SINE Alu 36 299 -13 1428 199 37 25 chrX 15158111 15158433 -147441497 + L1M4 LINE L1 4198 4523 -1623 5538 182 35 30 chrX 15158435 15160141 -147439789 + L1MD1 LINE L1 4290 6008 -234 2173 128 7 0 chrX 15160141 15160437 -147439493 + AluSx SINE Alu 1 298 -14 5538 182 35 30 chrX 15160437 15160674 -147439256 + L1MD1 LINE L1 6008 6242 0 454 289 16 0 chrX 15161094 15161215 -147438715 + MLT1J LTR MaLR 31 153 -358 2228 138 49 103 chrX 15161321 15161533 -147438397 + MLT1C LTR MaLR 1 223 -244 257 0 30 0 chrX 15161533 15161566 -147438364 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2228 138 49 103 chrX 15161566 15161847 -147438083 + MLT1C LTR MaLR 223 467 0 2228 165 37 0 chrX 15161873 15162225 -147437705 + MLT1A1 LTR MaLR 1 365 0 771 243 37 40 chrX 15163110 15163574 -147436356 + MLT1H LTR MaLR 1 555 0 346 274 14 82 chrX 15163634 15163780 -147436150 - LTR67 LTR ERVL -9 548 413 604 141 31 6 chrX 15163981 15164090 -147435840 + L1PB1 LINE L1 5685 5791 -360 236 78 0 118 chrX 15164121 15164172 -147435758 + L1MC4 LINE L1 6659 6703 -1339 294 247 0 0 chrX 15164172 15164249 -147435681 + (CATA)n Simple_repeat Simple_repeat 2 78 0 2706 92 17 3 chrX 15164258 15164618 -147435312 + L1PB1 LINE L1 5782 6146 -5 376 345 45 23 chrX 15164642 15164819 -147435111 - LTR67 LTR ERVL -374 183 3 186 189 0 0 chrX 15166666 15166703 -147433227 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 264 250 0 0 chrX 15167095 15167151 -147432779 + MIR SINE MIR 207 262 0 418 164 0 0 chrX 15167699 15167760 -147432170 + AluJ/FLAM SINE Alu 1 61 -251 1602 171 10 17 chrX 15167766 15168058 -147431872 + AluJo SINE Alu 1 290 -22 854 301 77 39 chrX 15168360 15168894 -147431036 - LTR67 LTR ERVL -2 555 2 719 257 64 24 chrX 15168894 15169167 -147430763 - L1MC/D LINE L1 -311 5810 5529 216 0 0 0 chrX 15169173 15169197 -147430733 + (T)n Simple_repeat Simple_repeat 1 24 0 1222 275 151 18 chrX 15170098 15170666 -147429264 + L1MC4a LINE L1 5288 5931 -1877 517 229 46 69 chrX 15171302 15171520 -147428410 + L1M4 LINE L1 3998 4210 -1936 815 186 14 7 chrX 15171532 15171672 -147428258 + FRAM SINE Alu 4 144 -32 2407 81 0 28 chrX 15171773 15172093 -147427837 - AluY SINE Alu 0 311 1 872 174 20 45 chrX 15172430 15172631 -147427299 - L1MEc LINE L1 -6165 231 36 2444 46 0 29 chrX 15172798 15173104 -147426826 + AluY SINE Alu 1 297 -14 549 173 24 71 chrX 15173104 15173231 -147426699 - L1ME3 LINE L1 -20 6142 6022 225 310 115 0 chrX 15173598 15173685 -147426245 - MIR3 SINE MIR -21 187 91 213 94 0 0 chrX 15174114 15174146 -147425784 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 2193 120 7 0 chrX 15174564 15174863 -147425067 + AluSx SINE Alu 1 301 -11 2174 110 0 25 chrX 15175550 15175579 -147424351 - AluSx SINE Alu -2 310 282 225 0 0 0 chrX 15175579 15175604 -147424326 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2174 110 0 25 chrX 15175604 15175892 -147424038 - AluSx SINE Alu -30 282 1 212 216 20 20 chrX 15176265 15176316 -147423614 - MIR SINE MIR -74 188 138 * 391 313 80 101 chrX 15176312 15176638 -147423292 - L2 LINE L2 0 3272 2954 239 274 16 16 chrX 15177174 15177236 -147422694 - MIR SINE MIR -181 81 20 630 263 106 17 chrX 15177947 15178183 -147421747 + MIR SINE MIR 1 257 -5 246 184 0 0 chrX 15178447 15178496 -147421434 + L1MD1 LINE L1 6180 6228 -14 443 276 0 17 chrX 15178686 15178802 -147421128 - L2 LINE L2 -1 3312 3199 321 244 36 0 chrX 15179247 15179335 -147420595 - MLT1J2 LTR MaLR -3 443 353 491 228 2 0 chrX 15179461 15179577 -147420353 - MLT1J2 LTR MaLR -288 162 69 1787 176 3 7 chrX 15181083 15181373 -147418557 - AluJb SINE Alu -23 289 1 2301 96 0 10 chrX 15183197 15183509 -147416421 - AluSq SINE Alu -4 309 1 2202 88 0 70 chrX 15184422 15184752 -147415178 - AluSg SINE Alu -3 307 1 1568 156 41 32 chrX 15185508 15185823 -147414107 - MER58D DNA MER1_type -68 318 1 298 286 107 36 chrX 15185833 15185973 -147413957 + MIR SINE MIR 20 169 -93 1197 291 34 47 chrX 15186133 15186558 -147413372 + L1MC4 LINE L1 7316 7732 -310 2893 77 3 22 chrX 15186558 15186920 -147413010 - THE1A LTR MaLR 0 355 1 1197 291 34 47 chrX 15186920 15187085 -147412845 + L1MC4 LINE L1 7732 7898 -144 189 107 0 0 chrX 15187086 15187114 -147412816 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 715 133 37 52 chrX 15189747 15189882 -147410048 - FLAM_C SINE Alu 0 133 1 505 260 13 7 chrX 15190248 15190398 -147409532 - L1MC5 LINE L1 -65 7896 7746 185 132 26 26 chrX 15192229 15192267 -147407663 - MIR SINE MIR -71 191 154 265 323 63 13 chrX 15192473 15192631 -147407299 - MLT1I LTR MaLR -203 206 41 338 331 108 22 chrX 15192711 15192850 -147407080 - MIR SINE MIR -103 159 9 725 320 52 55 chrX 15193760 15194042 -147405888 + L2 LINE L2 2378 2659 -613 1672 124 7 44 chrX 15194042 15194317 -147405613 - AluJb SINE Alu -9 303 39 1642 184 46 7 chrX 15194318 15194600 -147405330 - AluJb SINE Alu -19 293 1 725 320 52 55 chrX 15194600 15194956 -147404974 + L2 LINE L2 2658 3018 -254 496 221 39 26 chrX 15195003 15195157 -147404773 - LTR37B LTR ERV1 -85 383 228 787 208 6 66 chrX 15195719 15195902 -147404028 - MER5B DNA MER1_type 0 178 7 387 0 0 0 chrX 15195942 15195985 -147403945 + (TG)n Simple_repeat Simple_repeat 2 44 0 623 169 48 0 chrX 15196026 15196150 -147403780 - MER96 DNA MER1_type? -36 139 10 731 157 116 6 chrX 15196345 15196517 -147403413 - Charlie4a DNA MER1_type -3 505 315 848 132 0 0 chrX 15196518 15196639 -147403291 + AluSq/x SINE Alu 1 121 -192 1767 103 0 0 chrX 15196639 15196863 -147403067 + AluSg/x SINE Alu 74 297 -13 938 195 98 35 chrX 15196874 15196982 -147402948 - Charlie4a DNA MER1_type -1632 329 229 2197 85 0 7 chrX 15196982 15197300 -147402630 + AluSc SINE Alu 1 316 0 938 195 98 35 chrX 15197300 15197477 -147402453 - Charlie4a DNA MER1_type -1732 229 25 946 201 13 40 chrX 15197914 15198138 -147401792 + MER20 DNA MER1_type 1 218 -1 369 0 0 0 chrX 15198509 15198550 -147401380 + (TG)n Simple_repeat Simple_repeat 2 42 0 199 337 116 0 chrX 15199111 15199197 -147400733 - MIR SINE MIR -76 132 37 419 307 69 26 chrX 15199580 15199769 -147400161 + MIR3 SINE MIR 8 204 -4 459 369 14 14 chrX 15199817 15200034 -147399896 + MIR SINE MIR 3 219 -43 779 168 79 60 chrX 15200036 15200250 -147399680 + Charlie5 DNA MER1_type 1 212 -2400 6824 25 0 0 chrX 15200298 15201128 -147398802 - L1PA4 LINE L1 -3 6152 5323 977 199 80 56 chrX 15201128 15201280 -147398650 - MER58B DNA MER1_type -2099 321 157 2129 121 3 19 chrX 15201280 15201593 -147398337 - AluSx SINE Alu -4 308 1 977 199 80 56 chrX 15201593 15201726 -147398204 - MER58B DNA MER1_type -2263 157 29 529 279 74 70 chrX 15201730 15201883 -147398047 + L1ME2 LINE L1 5639 5790 -374 1722 179 0 0 chrX 15201883 15202151 -147397779 - AluJb SINE Alu -44 268 1 529 279 74 70 chrX 15202151 15202487 -147397443 + L1ME2 LINE L1 5790 6116 -48 949 155 80 9 chrX 15202651 15202864 -147397066 + MER33 DNA MER1_type 1 228 -96 1319 170 30 43 chrX 15202894 15203092 -147396838 - L1MB2 LINE L1 -2 6169 5975 1863 116 112 7 chrX 15203092 15203368 -147396562 - AluSx SINE Alu -7 305 1 1319 170 30 43 chrX 15203368 15203469 -147396461 - L1MB2 LINE L1 -196 5975 5874 189 107 0 0 chrX 15203469 15203497 -147396433 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1485 132 54 29 chrX 15203694 15203936 -147395994 - AluJo SINE Alu -14 298 51 1879 140 24 14 chrX 15204082 15204374 -147395556 + AluJo SINE Alu 11 305 -7 2196 101 0 20 chrX 15205159 15205465 -147394465 - AluSq SINE Alu -13 300 1 765 262 35 22 chrX 15206088 15206317 -147393613 + MIR SINE MIR 21 252 -10 389 179 0 0 chrX 15207242 15207309 -147392621 - MER103 DNA DNA -49 117 51 2322 94 0 0 chrX 15207676 15207973 -147391957 + AluSx SINE Alu 1 297 -15 1839 143 11 4 chrX 15208537 15208840 -147391090 + AluJo SINE Alu 1 305 0 216 0 0 0 chrX 15208894 15208918 -147391012 + (T)n Simple_repeat Simple_repeat 1 24 0 356 234 81 27 chrX 15210679 15210790 -147389140 + MIR SINE MIR 76 192 -70 2030 206 68 35 chrX 15211274 15211319 -147388611 - L1ME2 LINE L1 0 6164 6122 1874 160 0 20 chrX 15211319 15211625 -147388305 - AluJb SINE Alu -12 300 1 2030 206 68 35 chrX 15211625 15212151 -147387779 - L1ME2 LINE L1 -42 6122 5574 207 0 0 0 chrX 15212191 15212214 -147387716 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chrX 15213401 15213427 -147386503 + AT_rich Low_complexity Low_complexity 1 26 0 261 0 0 0 chrX 15214709 15214738 -147385192 + (TG)n Simple_repeat Simple_repeat 1 29 0 475 344 11 26 chrX 15215071 15215260 -147384670 - MIR SINE MIR -73 189 4 512 243 120 95 chrX 15215845 15216212 -147383718 - L2 LINE L2 -5 3308 2933 572 272 38 16 chrX 15216229 15216413 -147383517 - MIR SINE MIR -53 209 22 341 341 61 16 chrX 15216388 15216634 -147383296 - L2 LINE L2 -846 2468 2212 * 240 212 91 0 chrX 15216659 15216725 -147383205 + MIR SINE MIR 45 116 -92 215 302 302 23 chrX 15217559 15218172 -147381758 + L2 LINE L2 1937 2720 -594 220 279 0 15 chrX 15218626 15218694 -147381236 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 2034 91 4 0 chrX 15218694 15218959 -147380971 - AluSp SINE Alu -16 297 32 1041 186 86 45 chrX 15221080 15221349 -147378581 + Tigger3(Golem) DNA MER2_type 12 291 -2738 1209 99 6 0 chrX 15221349 15221510 -147378420 - AluSg/x SINE Alu -7 303 142 2913 122 27 89 chrX 15221610 15221948 -147377982 + Tigger3b DNA MER2_type 348 625 -2403 1173 90 22 6 chrX 15221948 15222126 -147377804 - L1MA1 LINE L1 0 6302 6122 2913 122 27 89 chrX 15222126 15222460 -147377470 + Tigger3b DNA MER2_type 625 978 -253 707 69 10 0 chrX 15222460 15222562 -147377368 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1209 137 41 25 chrX 15222563 15222760 -147377170 - AluJb SINE Alu -32 280 81 1552 106 0 0 chrX 15222760 15222986 -147376944 + Tigger3b DNA MER2_type 984 1209 -23 1311 148 18 95 chrX 15222987 15223073 -147376857 - L1MB7 LINE L1 -254 5930 5839 5079 83 28 16 chrX 15223073 15223828 -147376102 - L1MA1 LINE L1 -5 6297 5534 1311 148 18 95 chrX 15223828 15224079 -147375851 - L1MB7 LINE L1 -345 5839 5619 315 235 82 0 chrX 15224939 15225024 -147374906 + MIR SINE MIR 171 262 0 26 50 0 0 chrX 15225475 15225515 -147374415 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chrX 15226289 15226313 -147373617 + AT_rich Low_complexity Low_complexity 1 24 0 435 322 78 0 chrX 15227329 15227496 -147372434 + MIR SINE MIR 27 205 -57 1268 132 44 13 chrX 15227506 15227733 -147372197 - MER46A DNA MER2_type -2 234 1 287 320 104 31 chrX 15227788 15228010 -147371920 + LTR16C LTR ERVL 154 391 -100 337 270 103 28 chrX 15229015 15229337 -147370593 - L1ME LINE L1 -430 5691 5335 277 239 94 36 chrX 15230807 15230945 -147368985 - MLT1J LTR MaLR -327 184 39 373 209 101 0 chrX 15231122 15231251 -147368679 + L1MC4a LINE L1 5762 5903 -1905 2506 69 0 7 chrX 15231605 15231911 -147368019 - AluY SINE Alu -7 304 1 191 32 65 0 chrX 15232392 15232423 -147367507 + T-rich Low_complexity Low_complexity 3 35 0 4328 168 47 13 chrX 15232423 15234153 -147365777 - L1MB7 LINE L1 -6 6178 4395 1142 213 90 39 chrX 15234291 15234883 -147365047 - L1MC5 LINE L1 -170 7791 7261 384 142 66 85 chrX 15234927 15234963 -147364967 - L1MC5 LINE L1 -728 7233 7198 691 218 213 6 chrX 15234963 15235137 -147364793 + MER63A DNA MER1_type 1 210 0 384 142 66 85 chrX 15235137 15235206 -147364724 - L1MC5 LINE L1 -763 7198 7130 204 267 0 0 chrX 15235394 15235439 -147364491 - L2 LINE L2 -6 3307 3263 3844 181 32 21 chrX 15236027 15236814 -147363116 - L1MB7 LINE L1 -40 6144 5325 2266 116 48 22 chrX 15236814 15237169 -147362761 - THE1B LTR MaLR 0 364 1 3844 181 32 21 chrX 15237169 15237736 -147362194 - L1MB7 LINE L1 -859 5325 4766 314 280 18 73 chrX 15238015 15238168 -147361762 + MIR3 SINE MIR 44 191 -17 22 0 0 0 chrX 15239561 15239583 -147360347 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chrX 15239792 15239826 -147360104 + (TA)n Simple_repeat Simple_repeat 1 34 0 3582 229 109 92 chrX 15240200 15242048 -147357882 - HAL1 LINE L1 -141 2366 489 443 255 208 0 chrX 15242435 15242584 -147357346 - HAL1 LINE L1 -2180 327 148 442 314 63 29 chrX 15242746 15242953 -147356977 + L1MEd LINE L1 543 756 -5363 416 282 52 65 chrX 15242958 15243003 -147356927 + L1MEd LINE L1 803 847 -5272 2839 7 0 3 chrX 15243003 15243313 -147356617 + AluYa5 SINE Alu 1 309 -2 416 282 52 65 chrX 15243313 15243515 -147356415 + L1MEd LINE L1 847 1047 -5072 706 283 74 39 chrX 15243529 15243988 -147355942 + L1MEd LINE L1 1171 1645 -4665 1765 271 105 21 chrX 15243988 15244990 -147354940 + L1MEd LINE L1 2877 3962 -2167 207 0 0 0 chrX 15245237 15245260 -147354670 + (TG)n Simple_repeat Simple_repeat 2 24 0 1992 123 0 7 chrX 15246938 15247256 -147352674 + AluSx SINE Alu 1 316 0 182 296 137 56 chrX 15247474 15247915 -147352015 - L2 LINE L2 -219 3053 2550 207 69 0 0 chrX 15248163 15248192 -147351738 + (TATG)n Simple_repeat Simple_repeat 2 30 0 189 147 0 0 chrX 15248198 15248232 -147351698 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 866 121 0 0 chrX 15248243 15248359 -147351571 - FLAM_C SINE Alu -27 116 1 641 197 68 20 chrX 15249033 15249180 -147350750 + MIR SINE MIR 5 158 -104 207 162 0 0 chrX 15250080 15250117 -147349813 + (CAT)n Simple_repeat Simple_repeat 3 39 0 261 0 0 0 chrX 15250843 15250872 -147349058 + (CA)n Simple_repeat Simple_repeat 2 30 0 4873 166 47 12 chrX 15251534 15252487 -147347443 - L1MB8 LINE L1 0 6178 4993 2223 96 0 0 chrX 15252487 15252804 -147347126 - AluSc SINE Alu 0 317 1 4873 166 47 12 chrX 15252804 15253362 -147346568 - L1MB8 LINE L1 -1185 4993 4456 2050 105 0 0 chrX 15253537 15253803 -147346127 + AluY SINE Alu 27 292 -19 222 302 60 43 chrX 15253803 15253919 -147346011 + L3b LINE CR1 1379 1496 -87 1218 96 110 10 chrX 15254201 15254410 -147345520 - L1MA9 LINE L1 -1 6311 6082 2484 54 0 3 chrX 15254951 15255245 -147344685 + AluY SINE Alu 1 293 -18 262 301 130 30 chrX 15256001 15256212 -147343718 - MIR SINE MIR -21 241 16 399 258 11 0 chrX 15256453 15256542 -147343388 - MER5B DNA MER1_type -14 164 75 30 0 0 0 chrX 15256938 15256968 -147342962 + AT_rich Low_complexity Low_complexity 1 30 0 270 304 11 0 chrX 15257886 15257978 -147341952 + GA-rich Low_complexity Low_complexity 4 96 0 223 310 0 14 chrX 15258017 15258088 -147341842 - MER5B DNA MER1_type -106 72 3 266 269 198 47 chrX 15259340 15259495 -147340435 - MIR3 SINE MIR -61 147 7 569 244 45 0 chrX 15264875 15265051 -147334879 + L1M4 LINE L1 3073 3256 -2890 538 281 69 59 chrX 15266562 15266771 -147333159 - HAL1 LINE L1 -876 1631 1415 8190 62 2 0 chrX 15266771 15267738 -147332192 - LTR5 LTR ERVK 0 969 1 538 281 69 59 chrX 15267738 15267919 -147332011 - HAL1 LINE L1 -1092 1415 1237 1929 133 14 10 chrX 15267973 15268266 -147331664 - AluJb SINE Alu -13 299 6 6268 20 0 16 chrX 15269035 15269709 -147330221 - L1PA4 LINE L1 -1 6154 5490 2911 7 0 0 chrX 15269709 15270019 -147329911 - AluYa5 SINE Alu -1 310 1 6268 20 0 16 chrX 15270019 15270040 -147329890 - L1PA4 LINE L1 -665 5490 5470 861 277 4 31 chrX 15270765 15271021 -147328909 - MIR SINE MIR -13 249 1 2421 98 0 0 chrX 15271629 15271935 -147327995 - AluSg SINE Alu -4 306 1 985 180 79 60 chrX 15272050 15272309 -147327621 + MIR SINE MIR 2 261 -1 373 226 0 0 chrX 15272502 15272564 -147327366 + MER58A DNA MER1_type 1 62 -162 313 259 245 0 chrX 15273055 15273194 -147326736 + MER63A DNA MER1_type 1 173 -37 880 59 0 0 chrX 15273481 15273582 -147326348 - AluSg/x SINE Alu -18 294 194 1752 109 4 0 chrX 15273584 15273813 -147326117 - AluSx SINE Alu -82 230 1 2800 192 77 24 chrX 15273819 15274455 -147325475 - L1ME3A LINE L1 -6 6164 5495 490 275 100 34 chrX 15275735 15275961 -147323969 - MIR SINE MIR -15 247 9 217 294 92 37 chrX 15276025 15276134 -147323796 - L2 LINE L2 -6 3266 3152 2107 100 37 23 chrX 15276619 15276918 -147323012 - AluSx SINE Alu -9 303 1 195 283 0 0 chrX 15277133 15277179 -147322751 + MIR3 SINE MIR 112 157 -51 466 277 53 48 chrX 15277180 15277368 -147322562 - MER5A DNA MER1_type 0 189 1 219 378 46 27 chrX 15277492 15277754 -147322176 - L2 LINE L2 -482 2832 2566 460 250 59 0 chrX 15278278 15278414 -147321516 + MER103 DNA DNA 12 155 -11 1102 204 42 5 chrX 15278436 15278652 -147321278 + MER58A DNA MER1_type 1 224 0 326 398 60 5 chrX 15278957 15279173 -147320757 + L2 LINE L2 2566 2793 -521 309 228 76 13 chrX 15279176 15279255 -147320675 - LTR33A LTR ERVL 0 523 440 1554 187 107 0 chrX 15279505 15279804 -147320126 - MLT1F1 LTR MaLR -49 518 188 1706 224 59 25 chrX 15279883 15280325 -147319605 - LTR16A1 LTR ERVL 0 457 1 216 295 0 64 chrX 15280341 15280419 -147319511 + L2 LINE L2 3241 3313 0 25 31 0 0 chrX 15280620 15280652 -147319278 + AT_rich Low_complexity Low_complexity 1 32 0 276 324 97 14 chrX 15282006 15282151 -147317779 + L2 LINE L2 2292 2448 -866 471 283 97 36 chrX 15282234 15282481 -147317449 + L2 LINE L2 3009 3270 -2 723 255 120 5 chrX 15282505 15282721 -147317209 + MIR SINE MIR 1 241 -21 188 312 138 45 chrX 15282888 15283221 -147316709 - L2 LINE L2 -1122 2192 1829 2300 111 0 0 chrX 15284297 15284604 -147315326 - AluSq SINE Alu -6 307 1 23 33 0 0 chrX 15284711 15284741 -147315189 + AT_rich Low_complexity Low_complexity 1 30 0 2408 66 23 0 chrX 15286384 15286688 -147313242 - AluY SINE Alu 0 311 1 4614 143 32 21 chrX 15288394 15289363 -147310567 - L1MB7 LINE L1 -8 6176 5195 1961 161 0 10 chrX 15289364 15289675 -147310255 - AluJo SINE Alu -4 308 1 243 314 17 17 chrX 15289873 15289991 -147309939 + MER94 DNA DNA 16 133 -1 425 117 0 75 chrX 15290785 15290879 -147309051 - L1MA5A LINE L1 0 6297 6211 183 301 19 39 chrX 15291185 15291288 -147308642 + L2 LINE L2 1522 1622 -1692 2086 186 19 40 chrX 15291290 15291762 -147308168 - MLT1C LTR MaLR 0 467 6 758 251 212 17 chrX 15291776 15292186 -147307744 + L2 LINE L2 1642 2131 -1183 365 269 49 94 chrX 15292204 15292427 -147307503 - L1MC4 LINE L1 -1 8041 7829 2165 77 3 18 chrX 15292502 15292840 -147307090 - AluY SINE Alu 0 334 1 1737 208 58 2 chrX 15292840 15293325 -147306605 - L1M4 LINE L1 -3059 3087 2576 386 208 40 48 chrX 15293347 15293387 -147306543 - L1MDb LINE L1 -6265 144 105 1849 154 32 0 chrX 15293387 15293672 -147306258 + AluJo SINE Alu 1 294 -18 386 208 40 48 chrX 15293672 15293756 -147306174 - L1MDb LINE L1 -6304 105 21 261 304 95 47 chrX 15293821 15293969 -147305961 - MIR3 SINE MIR -5 203 49 1151 154 0 96 chrX 15294559 15294631 -147305299 + MER46A DNA MER2_type 1 78 -2653 2252 99 0 0 chrX 15294631 15294915 -147305015 - AluSx SINE Alu -28 284 1 1921 87 0 30 chrX 15294917 15295207 -147304723 - AluSq SINE Alu 0 313 38 1151 154 0 96 chrX 15295207 15295391 -147304539 + MER46A DNA MER2_type 79 235 -1 1083 256 94 33 chrX 15296011 15296254 -147303676 + L2 LINE L2 91 373 -2941 684 169 64 35 chrX 15296254 15296426 -147303504 + MER5B DNA MER1_type 1 177 -1 1083 256 94 33 chrX 15296426 15296607 -147303323 + L2 LINE L2 373 541 -2773 2358 73 10 3 chrX 15297177 15297478 -147302452 + AluSq SINE Alu 2 304 -9 878 198 23 0 chrX 15297570 15297742 -147302188 + AluJb SINE Alu 137 312 0 3803 104 2 21 chrX 15298600 15298934 -147300996 - L1P LINE L1 -1250 4896 4578 2361 81 0 3 chrX 15298934 15299232 -147300698 + AluY SINE Alu 1 297 -14 3803 104 2 21 chrX 15299232 15299512 -147300418 - L1P LINE L1 -1568 4578 4294 348 267 17 0 chrX 15299535 15299651 -147300279 + MER103 DNA DNA 4 121 -45 797 242 36 59 chrX 15300505 15300724 -147299206 + MIR SINE MIR 35 248 -14 181 235 0 0 chrX 15300797 15300831 -147299099 + L2 LINE L2 3270 3303 -10 610 193 9 0 chrX 15303267 15303376 -147296554 + AluJb SINE Alu 1 110 -202 2230 211 84 24 chrX 15303476 15304145 -147295785 - L1ME2 LINE L1 -133 6031 5323 * 3190 206 83 15 chrX 15304116 15305569 -147294361 + L1MD2 LINE L1 4540 6110 -249 22 35 0 0 chrX 15305598 15305627 -147294303 + AT_rich Low_complexity Low_complexity 1 29 0 333 231 134 94 chrX 15305714 15306095 -147293835 - HAL1 LINE L1 -1112 1395 1000 312 23 45 0 chrX 15306096 15306140 -147293790 - L1PA7 LINE L1 -2 6152 6107 1631 246 122 28 chrX 15306189 15306838 -147293092 - HAL1 LINE L1 -1596 911 202 2680 187 13 19 chrX 15306838 15307363 -147292567 + ERVL LTR ERVL 1692 2213 -3551 449 291 51 15 chrX 15307366 15307562 -147292368 - HAL1 LINE L1 -2301 206 4 2001 303 57 21 chrX 15307563 15308138 -147291792 + L2 LINE L2 2159 2780 -533 2616 58 0 0 chrX 15308138 15308448 -147291482 + AluY SINE Alu 1 310 -1 2001 303 57 21 chrX 15308448 15308806 -147291124 + L2 LINE L2 2780 3124 -189 2287 98 3 0 chrX 15311621 15311916 -147288014 - AluSx SINE Alu -16 296 1 260 339 76 53 chrX 15312978 15313149 -147286781 - MIR3 SINE MIR -13 195 21 325 281 70 47 chrX 15316111 15316145 -147283785 - MIR3 SINE MIR -21 187 155 975 193 16 11 chrX 15316145 15316332 -147283598 + MER5A DNA MER1_type 2 189 0 325 281 70 47 chrX 15316332 15316425 -147283505 - MIR3 SINE MIR -53 155 57 391 291 113 0 chrX 15316513 15316654 -147283276 - L2 LINE L2 -19 3253 3097 505 234 113 0 chrX 15316896 15317020 -147282910 - MLT1J2 LTR MaLR -293 157 20 322 304 136 35 chrX 15317055 15317258 -147282672 - L2 LINE L2 -181 3091 2855 2683 119 46 7 chrX 15317258 15317670 -147282260 - MSTC LTR MaLR 0 428 1 322 304 136 35 chrX 15317670 15317723 -147282207 - L2 LINE L2 -417 2855 2809 203 146 24 0 chrX 15318565 15318606 -147281324 + (TA)n Simple_repeat Simple_repeat 1 42 0 1069 167 31 13 chrX 15318606 15318833 -147281097 - MER97c DNA MER1_type? -836 254 24 27 0 0 0 chrX 15319353 15319380 -147280550 + AT_rich Low_complexity Low_complexity 1 27 0 1235 130 27 63 chrX 15319659 15319882 -147280048 + MER20 DNA MER1_type 1 215 -4 278 228 220 11 chrX 15320116 15320240 -147279690 - Charlie8 DNA MER1_type -2141 276 136 1295 243 77 23 chrX 15320365 15320896 -147279034 + L1M4 LINE L1 4698 5257 -889 285 271 0 0 chrX 15320967 15321037 -147278893 - Charlie8 DNA MER1_type -2345 72 3 682 251 58 1 chrX 15321679 15321895 -147278035 + MIR SINE MIR 3 257 -5 259 208 0 19 chrX 15322191 15322244 -147277686 - MIR SINE MIR -64 144 93 2483 218 33 126 chrX 15322245 15323378 -147276552 + MLT1E2-int LTR MaLR 345 1371 0 2013 206 121 43 chrX 15323378 15323959 -147275971 + MLT1E2 LTR MaLR 1 626 0 314 222 0 14 chrX 15324149 15324221 -147275709 + L1M4 LINE L1 190 260 -6282 5323 193 69 68 chrX 15324276 15326163 -147273767 + L1M4 LINE L1 271 2166 -4480 253 259 9 56 chrX 15326192 15326300 -147273630 + L1M4 LINE L1 2291 2393 -4253 388 223 74 43 chrX 15326497 15326816 -147273114 + L1M4c LINE L1 1747 2167 -4217 1807 216 6 9 chrX 15326862 15327307 -147272623 + L1M4c LINE L1 2314 2758 -3624 939 190 3 58 chrX 15327304 15327599 -147272331 + L1M4c LINE L1 3198 3476 -2906 * 243 61 0 0 chrX 15327728 15327761 -147272169 + (CA)n Simple_repeat Simple_repeat 1 33 0 1783 114 0 0 chrX 15428769 15429006 -147170924 - AluSq SINE Alu -76 237 1 528 199 37 42 chrX 15429073 15429255 -147170675 - MIR SINE MIR -62 146 12 336 281 21 3 chrX 15430987 15431117 -147168813 - MER5A DNA MER1_type -46 143 1 1188 190 53 34 chrX 15431363 15431626 -147168304 + LTR16C LTR ERVL 169 436 -55 672 265 5 41 chrX 15432951 15433147 -147166783 + MER5A DNA MER1_type 1 189 0 599 187 45 15 chrX 15433155 15433274 -147166656 + MER20 DNA MER1_type 1 123 -96 2030 151 55 56 chrX 15433274 15433336 -147166594 + MLT2A2 LTR ERVL 1 62 -492 2288 119 51 20 chrX 15433336 15433689 -147166241 - THE1B LTR MaLR 0 364 1 2030 151 55 56 chrX 15433689 15434175 -147165755 + MLT2A2 LTR ERVL 62 554 0 382 111 259 12 chrX 15434175 15434256 -147165674 + MER20 DNA MER1_type 119 219 0 741 199 144 15 chrX 15435148 15435349 -147164581 - MIR SINE MIR -1 261 35 1401 186 25 31 chrX 15435450 15435768 -147164162 - MER33 DNA MER1_type -7 317 2 408 40 0 0 chrX 15436036 15436086 -147163844 + (CA)n Simple_repeat Simple_repeat 2 51 0 204 125 0 0 chrX 15436253 15436285 -147163645 + (CA)n Simple_repeat Simple_repeat 1 32 0 203 233 0 23 chrX 15436676 15436719 -147163211 + MIR SINE MIR 52 93 -115 449 220 18 18 chrX 15436763 15436872 -147163058 + MER5B DNA MER1_type 8 116 -62 1234 244 52 10 chrX 15437450 15437758 -147162172 - MLT1I LTR MaLR 0 409 89 667 199 2 2 chrX 15438193 15438325 -147161605 - MER5B DNA MER1_type 0 178 58 427 272 127 38 chrX 15438343 15438556 -147161374 + MIR SINE MIR 15 246 -16 216 67 0 0 chrX 15439295 15439325 -147160605 + (CAT)n Simple_repeat Simple_repeat 1 30 0 480 184 39 10 chrX 15440346 15440449 -147159481 + MER5A DNA MER1_type 7 112 -77 1792 169 0 3 chrX 15440829 15441142 -147158788 - AluJb SINE Alu 0 312 1 22 0 0 0 chrX 15441969 15441991 -147157939 + GC_rich Low_complexity Low_complexity 1 22 0 186 247 103 31 chrX 15442975 15443072 -147156858 - MIR SINE MIR -127 135 32 2700 210 94 36 chrX 15443583 15444429 -147155501 - L1MC4 LINE L1 0 8042 7106 327 113 0 0 chrX 15445086 15445139 -147154791 + (T)n Simple_repeat Simple_repeat 1 53 0 234 253 22 11 chrX 15445538 15445629 -147154301 - MER103 DNA DNA 0 166 75 1679 251 88 22 chrX 15445640 15446131 -147153799 - MLT1H LTR MaLR -15 534 12 288 220 153 17 chrX 15446227 15446345 -147153585 + MIR SINE MIR 129 262 0 993 159 55 28 chrX 15447576 15447758 -147152172 + MER20 DNA MER1_type 16 202 -17 290 196 39 20 chrX 15448461 15448563 -147151367 + CT-rich Low_complexity Low_complexity 3 106 0 619 184 135 0 chrX 15449957 15450118 -147149812 + MER5A DNA MER1_type 4 189 0 570 285 0 15 chrX 15450126 15450256 -147149674 - MER5A DNA MER1_type 0 189 62 790 181 10 98 chrX 15450260 15450453 -147149477 - AluJo SINE Alu -14 298 123 228 203 0 62 chrX 15450455 15450519 -147149411 - MER5A DNA MER1_type -129 60 1 312 298 221 43 chrX 15451137 15451557 -147148373 + L2 LINE L2 2814 3308 -5 260 253 96 24 chrX 15451796 15451879 -147148051 - L2 LINE L2 -17 3255 3167 636 284 54 0 chrX 15452279 15452483 -147147447 + MIR SINE MIR 47 261 -1 1805 141 14 17 chrX 15452767 15453064 -147146866 - AluJo SINE Alu -16 296 1 385 374 33 6 chrX 15453199 15453381 -147146549 + MIR SINE MIR 48 234 -28 234 0 0 0 chrX 15453576 15453602 -147146328 + (TG)n Simple_repeat Simple_repeat 1 26 0 1440 265 75 5 chrX 15454257 15454657 -147145273 + LTR16C LTR ERVL 3 430 -61 393 262 77 18 chrX 15454762 15454930 -147145000 - MER20B DNA MER1_type -604 179 2 1744 164 0 20 chrX 15455062 15455361 -147144569 - AluJo SINE Alu -19 293 1 2273 61 0 0 chrX 15455552 15455871 -147144059 + AluY SINE Alu 1 319 0 282 291 23 0 chrX 15457654 15457740 -147142190 - MIR3 SINE MIR -26 182 95 933 280 127 6 chrX 15457753 15458114 -147141816 - LTR16C LTR ERVL 0 491 87 1347 261 42 61 chrX 15458431 15459011 -147140919 + L2 LINE L2 2748 3311 -2 636 290 178 30 chrX 15459218 15459556 -147140374 + MLT1I LTR MaLR 20 407 -2 196 311 49 0 chrX 15459565 15459626 -147140304 + MIR SINE MIR 77 140 -68 804 296 51 14 chrX 15460261 15460276 -147139654 - MIR SINE MIR -10 252 239 1754 166 27 0 chrX 15460276 15460571 -147139359 + AluJb SINE Alu 1 303 -9 804 296 51 14 chrX 15460571 15460771 -147139159 - MIR SINE MIR -23 239 29 432 0 0 0 chrX 15461246 15461294 -147138636 + (CA)n Simple_repeat Simple_repeat 2 49 0 437 203 149 27 chrX 15461297 15461445 -147138485 + LTR16A1 LTR ERVL 179 344 -113 225 0 0 0 chrX 15462168 15462193 -147137737 + (GA)n Simple_repeat Simple_repeat 2 26 0 656 306 48 5 chrX 15462249 15462455 -147137475 + MIR SINE MIR 47 261 -1 690 226 138 0 chrX 15462521 15462680 -147137250 - MER5A DNA MER1_type 0 189 9 756 291 57 24 chrX 15463551 15463798 -147136132 - MIR SINE MIR 0 262 8 256 225 109 29 chrX 15463838 15463976 -147135954 + L1ME4a LINE L1 5967 6115 -6 207 0 0 0 chrX 15463979 15464002 -147135928 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2017 109 0 3 chrX 15464005 15464289 -147135641 - AluSx SINE Alu -27 285 3 652 254 161 30 chrX 15464706 15465055 -147134875 - MLT1J1 LTR MaLR -2 428 45 225 208 62 0 chrX 15465081 15465129 -147134801 - L2 LINE L2 0 3313 3263 1228 250 187 13 chrX 15465332 15465907 -147134023 - LTR50 LTR ERVL -2 521 5 403 250 93 9 chrX 15466015 15466123 -147133807 - L2 LINE L2 0 3272 3156 213 152 0 0 chrX 15466693 15466726 -147133204 - L2 LINE L2 -17 3255 3223 313 291 13 0 chrX 15466862 15466941 -147132989 + MIR3 SINE MIR 95 174 -34 602 191 116 106 chrX 15467194 15467578 -147132352 - MLT1H LTR MaLR 0 555 108 348 331 40 11 chrX 15468029 15468204 -147131726 + (CATG)n Simple_repeat Simple_repeat 1 180 0 183 80 0 0 chrX 15468612 15468637 -147131293 + (A)n Simple_repeat Simple_repeat 1 25 0 1352 238 112 20 chrX 15470119 15470782 -147129148 + L2 LINE L2 2585 3312 -1 539 283 152 5 chrX 15471412 15471603 -147128327 - MIR SINE MIR -13 249 31 308 239 284 9 chrX 15471616 15471725 -147128205 - MER91C DNA MER1_type 0 140 2 388 281 99 57 chrX 15471764 15472027 -147127903 - MLT1J LTR MaLR 0 511 238 492 212 189 8 chrX 15472263 15472395 -147127535 + MER5A DNA MER1_type 34 189 0 548 183 0 0 chrX 15472464 15472557 -147127373 - MER81 DNA DNA -2 112 20 1664 69 0 5 chrX 15474327 15474544 -147125386 - L1PA7 LINE L1 0 6154 5939 838 231 16 0 chrX 15474841 15475027 -147124903 - MER5A DNA MER1_type 0 189 1 605 312 98 9 chrX 15475965 15476180 -147123750 - MIR SINE MIR -3 259 26 428 184 0 0 chrX 15476273 15476349 -147123581 - MER116 DNA Mariner 0 80 5 316 305 161 17 chrX 15476377 15476451 -147123479 + L1ME2 LINE L1 5765 5827 -343 210 37 0 0 chrX 15476451 15476478 -147123452 + (TA)n Simple_repeat Simple_repeat 2 28 0 316 305 161 17 chrX 15476478 15476577 -147123353 + L1ME2 LINE L1 5827 5963 -207 387 0 0 0 chrX 15476587 15476630 -147123300 + (TG)n Simple_repeat Simple_repeat 2 44 0 312 303 61 20 chrX 15476678 15476777 -147123153 + LTR16C LTR ERVL 150 252 -239 198 0 0 0 chrX 15476804 15476826 -147123104 + (TA)n Simple_repeat Simple_repeat 2 23 0 1894 223 60 91 chrX 15477002 15477604 -147122326 - MLT1E LTR MaLR 0 593 11 479 281 61 57 chrX 15477983 15478211 -147121719 + MIR SINE MIR 19 247 -15 238 188 0 0 chrX 15478384 15478432 -147121498 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 1134 278 76 11 chrX 15479103 15479485 -147120445 + LTR16C LTR ERVL 76 482 -9 207 0 0 0 chrX 15479870 15479893 -147120037 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 414 0 0 0 chrX 15481052 15481098 -147118832 + (CA)n Simple_repeat Simple_repeat 1 46 0 1519 255 60 13 chrX 15481587 15482054 -147117876 - LTR16C LTR ERVL -2 489 1 226 250 0 0 chrX 15482228 15482300 -147117630 + L1ME2 LINE L1 6093 6164 0 236 195 0 0 chrX 15482763 15482804 -147117126 + L2 LINE L2 3221 3261 -11 1192 192 19 0 chrX 15483703 15483911 -147116019 - MER20 DNA MER1_type -7 212 1 288 205 13 51 chrX 15484149 15484227 -147115703 - MER116 DNA Mariner 0 80 6 24 0 0 0 chrX 15484446 15484470 -147115460 + AT_rich Low_complexity Low_complexity 1 24 0 1416 209 71 77 chrX 15484470 15484948 -147114982 + MLT1H LTR MaLR 73 547 -2 1962 114 10 13 chrX 15485453 15485751 -147114179 - AluJb SINE Alu -6 306 10 336 321 9 0 chrX 15485915 15486024 -147113906 + L2 LINE L2 3144 3253 -19 180 111 0 0 chrX 15486033 15486060 -147113870 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 239 275 11 55 chrX 15486061 15486152 -147113778 - MIR3 SINE MIR -13 195 109 346 241 17 35 chrX 15487158 15487332 -147112598 + GA-rich Low_complexity Low_complexity 2 172 0 194 274 164 0 chrX 15487849 15487922 -147112008 + MIR SINE MIR 177 261 -1 333 0 0 0 chrX 15488125 15488162 -147111768 + (TTA)n Simple_repeat Simple_repeat 3 39 0 33761 89 7 9 chrX 15488163 15494309 -147105621 - L1PA6 LINE L1 -19 6135 11 319 176 118 0 chrX 15494335 15494403 -147105527 - MIR SINE MIR -81 181 106 624 297 87 58 chrX 15494505 15495246 -147104684 + L2 LINE L2 2544 3303 -10 255 140 70 53 chrX 15497463 15497520 -147102410 - L2 LINE L2 0 3272 3215 686 277 33 5 chrX 15497876 15498060 -147101870 + MIR SINE MIR 15 203 -59 298 189 0 0 chrX 15498267 15498320 -147101610 + MIR SINE MIR 209 261 -1 237 139 0 0 chrX 15498412 15498455 -147101475 + (TG)n Simple_repeat Simple_repeat 2 44 0 203 125 25 0 chrX 15498926 15498966 -147100964 + CT-rich Low_complexity Low_complexity 2 42 0 742 216 189 96 chrX 15499141 15499590 -147100340 + LTR16C LTR ERVL 1 491 0 669 203 68 82 chrX 15499800 15500007 -147099923 - L2 LINE L2 -1 3312 3109 433 291 8 0 chrX 15502167 15502284 -147097646 + MIR SINE MIR 35 152 -110 445 255 174 0 chrX 15502629 15502790 -147097140 - L2 LINE L2 -10 3303 3115 819 138 0 0 chrX 15504482 15504598 -147095332 - FLAM_C SINE Alu -25 118 3 622 161 18 0 chrX 15504673 15504785 -147095145 + MIR SINE MIR 77 190 -72 321 26 0 0 chrX 15505208 15505246 -147094684 + (TAA)n Simple_repeat Simple_repeat 2 39 0 350 285 43 25 chrX 15505541 15505659 -147094271 + MIR SINE MIR 34 154 -54 515 246 30 22 chrX 15507536 15507670 -147092260 - MLT1L LTR MaLR -164 451 317 228 180 11 124 chrX 15507713 15507802 -147092128 - MLT1J2 LTR MaLR -315 135 57 209 316 0 40 chrX 15507912 15507988 -147091942 - L2 LINE L2 -188 3084 3012 309 208 20 119 chrX 15508114 15508215 -147091715 + MIR3 SINE MIR 88 178 -30 614 302 55 8 chrX 15508351 15508586 -147091344 + MIR SINE MIR 2 247 -15 5920 82 4 31 chrX 15508643 15509488 -147090442 - L1PB1 LINE L1 -1 6150 5329 1320 298 62 24 chrX 15509560 15510178 -147089752 + L1ME4a LINE L1 5457 6097 -24 243 0 0 0 chrX 15511488 15511515 -147088415 + (TG)n Simple_repeat Simple_repeat 2 28 0 254 256 62 31 chrX 15512303 15512432 -147087498 + L1MC5 LINE L1 7777 7909 -52 187 189 0 0 chrX 15512498 15512535 -147087395 - MIR SINE MIR -161 101 65 511 297 87 31 chrX 15512574 15512803 -147087127 + MIR SINE MIR 1 242 -20 273 210 0 0 chrX 15513305 15513367 -147086563 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 493 275 44 19 chrX 15513511 15513671 -147086259 - MIR SINE MIR -17 245 82 209 98 24 0 chrX 15513730 15513771 -147086159 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 1348 236 88 24 chrX 15514160 15514571 -147085359 - LTR16A1 LTR ERVL -20 437 1 849 191 155 58 chrX 15516173 15516554 -147083376 - MLT1J1 LTR MaLR 0 450 11 2526 55 0 19 chrX 15516594 15516902 -147083028 - AluY SINE Alu -9 302 1 758 306 42 4 chrX 15517956 15518196 -147081734 - MIR SINE MIR -10 252 6 2123 247 98 9 chrX 15518257 15518893 -147081037 - L1ME3A LINE L1 -26 6144 5453 749 152 80 7 chrX 15518928 15519079 -147080851 - L1MC3 LINE L1 -6 7779 7618 22 80 0 0 chrX 15519085 15519135 -147080795 + AT_rich Low_complexity Low_complexity 1 50 0 405 306 20 14 chrX 15519330 15519477 -147080453 + MER5A DNA MER1_type 38 185 -4 324 64 0 0 chrX 15519748 15519795 -147080135 + (GA)n Simple_repeat Simple_repeat 1 47 0 303 313 9 18 chrX 15520209 15520321 -147079609 + GA-rich Low_complexity Low_complexity 3 113 0 212 274 107 2 chrX 15521312 15521408 -147078522 - MIR SINE MIR -62 146 70 231 103 0 0 chrX 15521673 15521712 -147078218 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 289 111 0 0 chrX 15522260 15522305 -147077625 - L1MA7 LINE L1 -4 6287 6243 1780 177 6 22 chrX 15522311 15522622 -147077308 - AluJo SINE Alu -6 306 1 31 44 0 0 chrX 15523497 15523542 -147076388 + AT_rich Low_complexity Low_complexity 1 45 0 360 0 0 0 chrX 15523705 15523745 -147076185 + (CA)n Simple_repeat Simple_repeat 1 40 0 499 255 38 25 chrX 15523751 15523908 -147076022 + MER103 DNA DNA 8 166 0 995 204 31 26 chrX 15526329 15526555 -147073375 - MIR SINE MIR -3 259 33 321 303 50 17 chrX 15526767 15526886 -147073044 - L2 LINE L2 -2 3311 3189 997 173 23 51 chrX 15527092 15527306 -147072624 + MER3 DNA MER1_type 2 209 0 2026 136 13 0 chrX 15527383 15527691 -147072239 - AluJo SINE Alu 0 312 1 436 276 56 122 chrX 15528657 15528994 -147070936 - L2 LINE L2 -115 3157 2843 515 277 29 0 chrX 15531991 15532128 -147067802 - MIR SINE MIR -8 254 114 1820 112 0 0 chrX 15532567 15532809 -147067121 + AluSq SINE Alu 1 242 -71 250 111 0 0 chrX 15534556 15534601 -147065329 - LTR66 LTR ERVL -171 439 395 243 133 0 0 chrX 15534563 15534608 -147065322 + LTR66 LTR ERVL 395 439 -171 * 345 221 0 53 chrX 15534639 15534734 -147065196 - L1MC4 LINE L1 -1339 6703 6614 316 300 22 0 chrX 15534658 15534748 -147065182 + L1MC4 LINE L1 6612 6703 -1339 * 1716 159 19 0 chrX 15534754 15535024 -147064906 - AluJb SINE Alu -37 275 1 199 289 87 67 chrX 15535462 15535566 -147064364 + L2 LINE L2 3149 3254 -18 1784 183 24 5 chrX 15535887 15536258 -147063672 - MER3 DNA MER1_type 0 2611 2234 545 219 0 9 chrX 15536266 15536380 -147063550 - MER3 DNA MER1_type -87 122 57 1435 274 26 38 chrX 15538459 15538911 -147061019 + MLT1J2 LTR MaLR 1 447 -3 261 302 138 17 chrX 15539397 15539513 -147060417 + L2 LINE L2 3182 3311 -2 640 306 90 77 chrX 15539899 15540914 -147059016 - L2 LINE L2 -3 3310 2251 321 246 271 0 chrX 15541283 15541405 -147058525 + MIR3 SINE MIR 48 202 -6 22 0 0 0 chrX 15542391 15542413 -147057517 + AT_rich Low_complexity Low_complexity 1 22 0 1705 162 0 36 chrX 15542413 15542715 -147057215 - AluJo SINE Alu -21 291 1 379 165 37 73 chrX 15542784 15542893 -147057037 + MLT1J1 LTR MaLR 1 105 -341 1838 228 66 0 chrX 15543785 15544223 -147055707 - L1ME3A LINE L1 0 6170 5704 1911 165 83 70 chrX 15544373 15544889 -147055041 - Charlie1b DNA MER1_type 0 523 1 1758 136 12 81 chrX 15545101 15545520 -147054410 - Charlie5 DNA MER1_type 0 2624 2235 771 197 7 0 chrX 15545499 15545646 -147054284 - MER3 DNA MER1_type -21 188 41 * 939 244 0 0 chrX 15548198 15548395 -147051535 + MIR SINE MIR 56 252 -10 278 143 0 0 chrX 15549714 15549756 -147050174 + 5S rRNA rRNA 1 42 -79 851 239 33 16 chrX 15549887 15550267 -147049663 + LTR16A1 LTR ERVL 2 457 0 680 244 28 22 chrX 15550296 15550476 -147049454 - MER5A DNA MER1_type -7 182 2 250 330 0 9 chrX 15551122 15551228 -147048702 - MIR SINE MIR -1 261 157 570 296 108 38 chrX 15551293 15551637 -147048293 - MLT1J LTR MaLR -110 401 34 396 250 0 0 chrX 15551674 15551770 -147048160 - MIR SINE MIR -100 162 67 441 167 0 0 chrX 15552004 15552082 -147047848 - L2 LINE L2 -15 3298 3221 458 235 125 0 chrX 15552099 15552235 -147047695 + MIR SINE MIR 58 210 -52 229 182 18 18 chrX 15552275 15552330 -147047600 + (TTA)n Simple_repeat Simple_repeat 3 57 0 288 148 16 16 chrX 15554576 15554637 -147045293 - MER5A DNA MER1_type -103 86 26 521 86 11 43 chrX 15556454 15556547 -147043383 + MER5B DNA MER1_type 72 161 -17 24 32 0 0 chrX 15557851 15557882 -147042048 + AT_rich Low_complexity Low_complexity 1 31 0 447 306 111 17 chrX 15558014 15558249 -147041681 + MIR SINE MIR 2 258 -4 186 286 74 89 chrX 15558699 15558804 -147041126 - L2 LINE L2 -12 3260 3155 1724 142 36 127 chrX 15558804 15559275 -147040655 - MSTC LTR MaLR 0 428 1 186 286 74 89 chrX 15559275 15559438 -147040492 - L2 LINE L2 -117 3155 2996 216 0 0 0 chrX 15560587 15560611 -147039319 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 195 100 0 0 chrX 15561239 15561269 -147038661 + (A)n Simple_repeat Simple_repeat 1 30 0 216 0 0 0 chrX 15561422 15561446 -147038484 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2108 94 0 11 chrX 15561446 15561722 -147038208 - AluSc SINE Alu -36 273 1 241 293 30 0 chrX 15561760 15561859 -147038071 + MIR SINE MIR 161 262 0 523 271 18 30 chrX 15562578 15562744 -147037186 - MIR SINE MIR -78 184 21 222 37 0 0 chrX 15562753 15562780 -147037150 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 207 316 102 58 chrX 15563793 15563999 -147035931 + L2 LINE L2 2869 3083 -189 21 0 0 0 chrX 15564659 15564680 -147035250 + AT_rich Low_complexity Low_complexity 1 21 0 273 57 0 0 chrX 15565401 15565436 -147034494 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1707 155 36 11 chrX 15565439 15565716 -147034214 - AluJo SINE Alu -26 286 3 192 125 31 0 chrX 15566833 15566865 -147033065 + MER5B DNA MER1_type 146 178 0 1192 236 125 34 chrX 15567563 15568025 -147031905 - MLT1H LTR MaLR -1 548 4 698 266 27 5 chrX 15568230 15568418 -147031512 + MIR SINE MIR 1 192 -70 21 0 0 0 chrX 15569051 15569072 -147030858 + AT_rich Low_complexity Low_complexity 1 21 0 214 298 95 0 chrX 15569830 15569914 -147030016 - MIR3 SINE MIR -5 203 112 1084 176 70 18 chrX 15571043 15571270 -147028660 - MLT1J2 LTR MaLR -205 245 7 1266 214 0 0 chrX 15571432 15571656 -147028274 + MER58A DNA MER1_type 1 224 0 3977 118 22 5 chrX 15571732 15572358 -147027572 + L1MA5 LINE L1 5658 6294 -6 262 216 182 34 chrX 15572424 15572512 -147027418 + L2 LINE L2 3192 3292 -21 560 232 55 76 chrX 15572640 15572877 -147027053 - MIR SINE MIR -6 256 25 231 114 0 0 chrX 15572880 15572915 -147027015 + (T)n Simple_repeat Simple_repeat 1 35 0 463 214 45 0 chrX 15573303 15573415 -147026515 - MER5A DNA MER1_type -39 150 34 29 60 0 0 chrX 15575642 15575692 -147024238 + GC_rich Low_complexity Low_complexity 1 50 0 313 258 22 11 chrX 15578380 15578469 -147021461 - MLT1J2 LTR MaLR -2 448 359 607 174 95 2 chrX 15578495 15578704 -147021226 - MLT1J2 LTR MaLR -147 303 53 212 321 24 12 chrX 15578957 15579041 -147020889 - MIR SINE MIR -107 101 17 1063 221 9 0 chrX 15579216 15579438 -147020492 - MIR SINE MIR -36 226 3 369 241 107 70 chrX 15579877 15580323 -147019607 - MLT1G1 LTR MaLR -8 587 39 1648 56 0 14 chrX 15580731 15580946 -147018984 - L1PA8 LINE L1 -1 6171 5960 1501 237 23 6 chrX 15581243 15581593 -147018337 + LTR16A LTR ERVL 82 437 -13 4235 194 73 50 chrX 15582706 15584795 -147015135 - L1ME2 LINE L1 0 6164 4026 2585 24 7 3 chrX 15584795 15585088 -147014842 - AluY SINE Alu -2 309 16 4235 194 73 50 chrX 15585088 15585121 -147014809 - L1ME2 LINE L1 -2138 4026 3995 1068 250 53 3 chrX 15585108 15585408 -147014522 - L1ME2 LINE L1 -2466 3680 3366 * 344 122 0 40 chrX 15586080 15586154 -147013776 + (TGAA)n Simple_repeat Simple_repeat 1 71 0 345 238 2 33 chrX 15586172 15586285 -147013645 - MLT1I LTR MaLR 0 450 318 576 251 37 25 chrX 15586287 15586450 -147013480 - MLT1J2 LTR MaLR -219 231 67 1724 172 3 31 chrX 15587447 15587738 -147012192 + AluJb SINE Alu 1 283 -29 665 291 29 0 chrX 15587918 15588128 -147011802 + L2 LINE L2 2843 3058 -255 1271 195 29 0 chrX 15588128 15588374 -147011556 - LTR16C LTR ERVL 0 491 239 422 282 204 19 chrX 15588547 15588763 -147011167 + L2 LINE L2 3056 3311 -2 278 376 96 0 chrX 15591019 15591144 -147008786 - L2 LINE L2 0 3272 3136 1370 239 86 18 chrX 15591599 15591996 -147007934 - MLT1J2 LTR MaLR -6 444 21 543 303 13 42 chrX 15592167 15592405 -147007525 + L2 LINE L2 3083 3313 0 181 313 81 10 chrX 15592398 15592497 -147007433 - L2 LINE L2 -190 3082 2977 * 549 0 0 0 chrX 15592654 15592715 -147007215 + (CA)n Simple_repeat Simple_repeat 2 62 0 298 351 144 5 chrX 15592894 15593096 -147006834 + MIR SINE MIR 20 249 -13 356 169 39 0 chrX 15593217 15593294 -147006636 + MER116 DNA Mariner 1 80 0 548 81 14 0 chrX 15593894 15593968 -147005962 + MER116 DNA Mariner 5 79 -1 950 321 35 12 chrX 15594752 15595095 -147004835 + L1MC4a LINE L1 6450 6800 -1008 310 173 67 0 chrX 15596350 15596425 -147003505 - MER116 DNA Mariner 0 80 1 801 209 63 0 chrX 15596448 15596606 -147003324 + MER5A DNA MER1_type 16 183 -6 297 305 21 11 chrX 15597161 15597256 -147002674 + L1ME4a LINE L1 5728 5823 -298 1433 167 33 0 chrX 15597292 15597455 -147002475 - AluJb SINE Alu -20 292 117 234 0 0 0 chrX 15597455 15597481 -147002449 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1433 167 33 0 chrX 15597481 15597557 -147002373 - AluJb SINE Alu -195 117 45 251 221 214 39 chrX 15597586 15597740 -147002190 + L1ME4a LINE L1 5880 6060 -61 219 36 0 0 chrX 15597743 15597771 -147002159 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 237 33 0 0 chrX 15597770 15597800 -147002130 + (GA)n Simple_repeat Simple_repeat 1 30 0 2695 125 47 2 chrX 15597800 15598207 -147001723 - MSTA LTR MaLR -3 425 1 239 268 45 62 chrX 15598316 15598428 -147001502 + L2 LINE L2 3158 3267 -5 343 307 95 15 chrX 15599758 15599895 -147000035 + MIR3 SINE MIR 12 159 -49 752 207 36 131 chrX 15599895 15600097 -146999833 + MER112 DNA MER1_type 1 172 -88 386 71 36 0 chrX 15600097 15600153 -146999777 - L1PA7 LINE L1 0 6154 6097 752 207 36 131 chrX 15600153 15600225 -146999705 + MER112 DNA MER1_type 172 249 -11 450 242 67 8 chrX 15601032 15601152 -146998778 - MIR3 SINE MIR -38 170 44 500 310 44 35 chrX 15602919 15603148 -146996782 + MIR SINE MIR 11 241 -21 2962 82 3 14 chrX 15603370 15603738 -146996192 + THE1B LTR MaLR 1 364 0 2090 191 87 16 chrX 15603751 15603910 -146996020 - MLT1E1 LTR MaLR -2 652 506 222 37 0 0 chrX 15603910 15603937 -146995993 + (CATCT)n Simple_repeat Simple_repeat 4 30 0 2090 191 87 16 chrX 15603937 15604317 -146995613 - MLT1E1 LTR MaLR -148 506 1 313 268 12 12 chrX 15605383 15605465 -146994465 + L2 LINE L2 3193 3274 -39 332 306 89 16 chrX 15605593 15605717 -146994213 - MER5A DNA MER1_type -2 187 55 254 286 29 29 chrX 15605624 15605729 -146994201 + MER5A DNA MER1_type 53 157 -32 * 1178 182 43 16 chrX 15607433 15607691 -146992239 - MER20B DNA MER1_type -5 778 514 604 239 221 26 chrX 15607763 15608035 -146991895 - MER20B DNA MER1_type -458 325 1 349 271 60 61 chrX 15608039 15608190 -146991740 - MIR3 SINE MIR -53 155 4 340 305 38 126 chrX 15608940 15609179 -146990751 + L2 LINE L2 3054 3271 -1 270 352 106 21 chrX 15610106 15610248 -146989682 - L2 LINE L2 -97 3175 3022 21 36 0 0 chrX 15610386 15610414 -146989516 + AT_rich Low_complexity Low_complexity 1 28 0 302 255 27 27 chrX 15611294 15611422 -146988508 + MER63 DNA MER1_type 709 1061 0 201 94 0 0 chrX 15611507 15611539 -146988391 + (TTG)n Simple_repeat Simple_repeat 2 33 0 828 236 25 20 chrX 15612214 15612413 -146987517 + MIR SINE MIR 53 252 -10 677 248 178 5 chrX 15614042 15614256 -146985674 + MIR SINE MIR 12 262 0 498 313 114 0 chrX 15614289 15614455 -146985475 + MIR SINE MIR 5 189 -73 1064 241 114 50 chrX 15614592 15615032 -146984898 + L1ME4a LINE L1 5514 5981 -140 555 214 0 0 chrX 15615040 15615129 -146984801 + MER119 DNA MER1_type 1 89 -494 464 312 115 15 chrX 15616926 15617266 -146982664 + HAL1b LINE L1 481 854 -494 1400 289 49 29 chrX 15617684 15618383 -146981547 + L1MC4a LINE L1 3243 3955 -2191 186 133 0 0 chrX 15618400 15618430 -146981500 + (TA)n Simple_repeat Simple_repeat 2 31 0 2078 259 94 37 chrX 15618440 15618991 -146980939 + L1MC4a LINE L1 4370 4888 -1258 971 199 147 5 chrX 15618991 15619182 -146980748 - MER20 DNA MER1_type 0 219 2 2078 259 94 37 chrX 15619182 15619657 -146980273 + L1MC4a LINE L1 4888 5334 -812 2198 89 10 7 chrX 15619657 15619948 -146979982 + AluJb SINE Alu 21 312 0 2078 259 94 37 chrX 15619948 15620393 -146979537 + L1MC4a LINE L1 5334 5325 -821 2181 158 12 0 chrX 15620393 15620735 -146979195 + MER7A DNA MER2_type 2 345 -1 2078 259 94 37 chrX 15620735 15620779 -146979151 + L1MC4a LINE L1 5324 5364 -782 192 40 0 0 chrX 15620916 15620941 -146978989 + (CA)n Simple_repeat Simple_repeat 2 26 0 1399 153 51 45 chrX 15621466 15621799 -146978131 + L1MC4a LINE L1 5983 6317 -1491 1947 109 11 18 chrX 15621893 15622177 -146977753 + AluSx SINE Alu 17 298 -14 1737 147 0 87 chrX 15622463 15622796 -146977134 + AluJb SINE Alu 1 304 -8 195 100 0 0 chrX 15622818 15622848 -146977082 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1159 109 0 29 chrX 15623612 15623782 -146976148 + FRAM SINE Alu 5 170 -2 2222 89 7 14 chrX 15623782 15624074 -146975856 - AluY SINE Alu -21 290 1 2200 191 80 14 chrX 15625169 15625396 -146974534 + L1MC4a LINE L1 7273 7484 -324 1539 166 22 26 chrX 15625396 15625694 -146974236 + AluJo SINE Alu 14 310 0 2200 191 80 14 chrX 15625694 15625967 -146973963 + L1MC4a LINE L1 7484 7807 -1 315 0 0 0 chrX 15625967 15626002 -146973928 + (CA)n Simple_repeat Simple_repeat 2 36 0 372 242 30 10 chrX 15626349 15626448 -146973482 - MER117 DNA MER1_type -8 189 89 237 321 45 36 chrX 15628310 15628422 -146971508 - L2 LINE L2 -490 2824 2712 857 232 75 31 chrX 15628540 15628794 -146971136 + ERVL LTR ERVL 2365 2629 -3135 1453 227 176 58 chrX 15628974 15629683 -146970247 - LTR50 LTR ERVL -2 793 1 1562 193 64 9 chrX 15629903 15630230 -146969700 + L1MD2 LINE L1 5788 6132 -227 23 0 0 0 chrX 15630977 15631000 -146968930 + AT_rich Low_complexity Low_complexity 1 23 0 1492 170 147 93 chrX 15631206 15631723 -146968207 - L1ME3 LINE L1 -254 5908 5364 225 67 0 0 chrX 15631723 15631768 -146968162 + LTR66 LTR ERVL 394 438 -172 225 67 0 0 chrX 15631730 15631775 -146968155 - LTR66 LTR ERVL -172 438 394 297 0 0 0 chrX 15631838 15631871 -146968059 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chrX 15631870 15631890 -146968040 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 275 340 49 15 chrX 15633891 15634094 -146965836 - L1MEd LINE L1 -5314 805 596 4050 95 7 13 chrX 15634509 15635065 -146964865 - L1PB2 LINE L1 -6 6145 5593 1598 78 5 0 chrX 15635070 15635274 -146964656 - L1PA13 LINE L1 -3 6160 5956 2346 105 3 0 chrX 15636439 15636743 -146963187 - AluSx SINE Alu -7 305 1 915 212 59 18 chrX 15637083 15637253 -146962677 - MER45A DNA AcHobo -1 177 1 21 0 0 0 chrX 15637349 15637370 -146962560 + AT_rich Low_complexity Low_complexity 1 21 0 1046 219 21 17 chrX 15637540 15637778 -146962152 - MIR SINE MIR -21 241 3 974 168 11 14 chrX 15637798 15638227 -146961703 + GA-rich Low_complexity Low_complexity 1 428 0 1010 102 17 6 chrX 15638232 15638409 -146961521 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 926 130 20 17 chrX 15638412 15638712 -146961218 + GA-rich Low_complexity Low_complexity 1 301 0 336 138 0 0 chrX 15639409 15639474 -146960456 + (TC)n Simple_repeat Simple_repeat 2 66 0 411 73 0 0 chrX 15643203 15643258 -146956672 + (TG)n Simple_repeat Simple_repeat 1 55 0 252 0 0 0 chrX 15648026 15648054 -146951876 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 726 54 0 0 chrX 15648682 15648775 -146951155 + L1PB1 LINE L1 6058 6150 -1 294 89 71 0 chrX 15648778 15648834 -146951096 + L1MA7 LINE L1 6232 6291 0 362 280 98 8 chrX 15649696 15649828 -146950102 + MIR SINE MIR 4 147 -115 204 125 0 0 chrX 15650204 15650236 -146949694 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 596 247 7 7 chrX 15650463 15650613 -146949317 - L1MC5 LINE L1 -76 7885 7736 2489 80 0 10 chrX 15650701 15651014 -146948916 - AluSx SINE Alu -2 310 1 283 336 96 0 chrX 15651134 15651238 -146948692 + L2 LINE L2 3141 3254 -18 204 111 0 0 chrX 15653983 15654019 -146945911 + (TG)n Simple_repeat Simple_repeat 2 37 0 1801 70 4 0 chrX 15655592 15655819 -146944111 + AluSq SINE Alu 82 309 -4 686 261 152 0 chrX 15656081 15656265 -146943665 - MIR SINE MIR -28 234 23 237 33 0 0 chrX 15656895 15656925 -146943005 + (C)n Simple_repeat Simple_repeat 1 30 0 2362 107 0 0 chrX 15659043 15659351 -146940579 + AluSx SINE Alu 1 308 -4 512 307 92 5 chrX 15659517 15659735 -146940195 - MIR SINE MIR -6 256 20 811 238 70 23 chrX 15659875 15660089 -146939841 - MIR SINE MIR -21 241 18 186 336 94 16 chrX 15660224 15660352 -146939578 - L2 LINE L2 -228 3044 2907 235 188 21 0 chrX 15660511 15660559 -146939371 - MER58 DNA MER1_type -5 2415 2367 1528 123 156 62 chrX 15660565 15660873 -146939057 - MER1B DNA MER1_type -2 337 1 284 284 10 10 chrX 15660878 15660980 -146938950 - L2 LINE L2 -448 2866 2765 500 200 8 67 chrX 15661046 15661092 -146938838 + MIR SINE MIR 63 110 -152 1386 71 77 0 chrX 15661092 15661131 -146938799 - MER107 DNA MER1_type 0 197 162 182 36 0 36 chrX 15661131 15661159 -146938771 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1386 71 77 0 chrX 15661159 15661301 -146938629 - MER107 DNA MER1_type -35 162 2 500 200 8 67 chrX 15661301 15661374 -146938556 + MIR SINE MIR 110 175 -87 21 36 0 0 chrX 15661424 15661452 -146938478 + AT_rich Low_complexity Low_complexity 1 28 0 344 125 0 100 chrX 15661731 15661811 -146938119 + L1MC3 LINE L1 7616 7687 -98 483 281 114 6 chrX 15662124 15662291 -146937639 + L1MC/D LINE L1 5627 5811 -1997 866 198 35 10 chrX 15662331 15662528 -146937402 - L1ME3A LINE L1 -201 5969 5768 199 200 0 0 chrX 15663046 15663081 -146936849 - L3 LINE CR1 -13 1564 1530 695 290 0 5 chrX 15663815 15664001 -146935929 - L1ME3A LINE L1 -436 5728 5544 25 31 0 0 chrX 15665388 15665420 -146934510 + AT_rich Low_complexity Low_complexity 1 32 0 342 279 42 91 chrX 15666862 15667170 -146932760 + L2 LINE L2 2817 3109 -163 529 254 53 18 chrX 15667281 15667450 -146932480 - MIR SINE MIR -79 183 9 907 204 39 6 chrX 15667459 15667640 -146932290 - MER5A DNA MER1_type -2 187 1 210 301 57 49 chrX 15667679 15667722 -146932208 + L2 LINE L2 3175 3216 -97 1693 142 0 8 chrX 15667722 15667982 -146931948 - AluJb SINE Alu -54 258 1 210 301 57 49 chrX 15667982 15668061 -146931869 + L2 LINE L2 3216 3298 -15 294 29 0 0 chrX 15668064 15668099 -146931831 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 322 295 16 8 chrX 15670006 15670128 -146929802 - MIR SINE MIR 0 262 140 22 0 0 0 chrX 15672049 15672071 -146927859 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 15674422 15674443 -146925487 + AT_rich Low_complexity Low_complexity 1 21 0 289 261 123 14 chrX 15676274 15676412 -146923518 + Charlie7 DNA MER1_type 11 163 -2449 596 214 60 59 chrX 15676984 15677012 -146922918 + Charlie7 DNA MER1_type 346 372 -2240 652 232 61 0 chrX 15677012 15677176 -146922754 - MER104 DNA MER2_type -2 178 5 596 214 60 59 chrX 15677176 15677433 -146922497 + Charlie7 DNA MER1_type 372 719 -1893 1193 231 39 52 chrX 15677457 15677899 -146922031 + L1MC5 LINE L1 7478 7913 -48 1057 236 60 39 chrX 15677903 15678289 -146921641 + Charlie7 DNA MER1_type 717 1110 -1502 1959 102 8 0 chrX 15678749 15679004 -146920926 + AluSx SINE Alu 1 257 -55 681 229 49 7 chrX 15679013 15679269 -146920661 - MLT1J2 LTR MaLR -109 341 1 259 227 0 15 chrX 15679900 15679966 -146919964 + L2 LINE L2 3159 3223 -90 325 230 0 23 chrX 15680428 15680515 -146919415 + HsTC2 DNA Tc2 2 86 -1812 297 296 21 99 chrX 15680795 15681079 -146918851 - L2 LINE L2 -44 3228 2967 873 186 30 74 chrX 15681310 15681370 -146918560 - MLT1F1 LTR MaLR -13 554 493 189 0 0 0 chrX 15681370 15681391 -146918539 + (TC)n Simple_repeat Simple_repeat 2 22 0 2236 92 0 20 chrX 15681391 15681683 -146918247 - AluSx SINE Alu -26 286 1 873 186 30 74 chrX 15681683 15681852 -146918078 - MLT1F1 LTR MaLR -72 495 334 532 243 66 7 chrX 15682167 15682319 -146917611 - MLT1F1 LTR MaLR -381 161 1 669 313 117 21 chrX 15682319 15682413 -146917517 + L1ME4a LINE L1 5380 5464 -657 2168 118 0 3 chrX 15682413 15682719 -146917211 + L1PA16 LINE L1 5858 6162 -4 669 313 117 21 chrX 15682719 15683094 -146916836 + L1ME4a LINE L1 5464 5894 -227 667 178 9 0 chrX 15683560 15683667 -146916263 + FLAM_A SINE Alu 1 108 -34 472 261 0 0 chrX 15684728 15684839 -146915091 - MLT1J LTR MaLR -142 369 259 231 333 78 31 chrX 15694593 15694848 -146905082 + L2 LINE L2 2844 3110 -203 234 62 0 0 chrX 15696938 15696970 -146902960 + (TC)n Simple_repeat Simple_repeat 1 32 0 577 264 74 44 chrX 15697380 15697798 -146902132 + MLT1F1 LTR MaLR 18 506 -61 1570 160 0 8 chrX 15698078 15698328 -146901602 - AluJb SINE Alu -64 248 1 342 314 87 79 chrX 15699368 15699772 -146900158 - MLT1I LTR MaLR -2 407 1 273 293 12 0 chrX 15699970 15700052 -146899878 - Charlie8 DNA MER1_type -2235 182 100 41618 31 23 1 chrX 15700853 15706866 -146893064 - L1PA3 LINE L1 -1 6154 3 232 293 13 0 chrX 15707515 15707590 -146892340 - MER5B DNA MER1_type -98 80 5 643 262 21 0 chrX 15709332 15709473 -146890457 - MIR SINE MIR -102 160 17 258 221 44 0 chrX 15709671 15709739 -146890191 + Charlie7 DNA MER1_type 35 105 -2507 * 323 216 39 46 chrX 15709706 15709859 -146890071 + Charlie7 DNA MER1_type 2420 2571 -41 593 276 56 80 chrX 15710114 15710400 -146889530 - L2 LINE L2 -1 3271 2993 768 191 0 0 chrX 15710414 15710545 -146889385 + FLAM_C SINE Alu 1 131 -2 343 358 62 38 chrX 15710757 15711176 -146888754 - L2 LINE L2 -565 2749 2321 399 211 0 0 chrX 15711191 15711281 -146888649 + GA-rich Low_complexity Low_complexity 1 90 0 276 257 14 14 chrX 15711648 15711718 -146888212 + GA-rich Low_complexity Low_complexity 3 72 0 24 32 0 0 chrX 15711730 15711761 -146888169 + AT_rich Low_complexity Low_complexity 1 31 0 185 295 295 0 chrX 15712028 15712133 -146887797 - L2 LINE L2 -8 3264 3129 721 71 43 64 chrX 15713797 15713937 -146885993 - L1MB8 LINE L1 0 6178 6042 360 331 129 30 chrX 15713959 15714222 -146885708 + L3b LINE CR1 1103 1391 -192 360 287 46 9 chrX 15714598 15714663 -146885267 - L2 LINE L2 -3 3269 3197 760 209 163 46 chrX 15714663 15714859 -146885071 + MER20 DNA MER1_type 1 219 0 360 287 46 9 chrX 15714859 15714901 -146885029 - L2 LINE L2 -75 3197 3158 1833 126 44 14 chrX 15715193 15715358 -146884572 - AluJb SINE Alu -8 304 125 405 0 0 0 chrX 15715358 15715403 -146884527 + (TG)n Simple_repeat Simple_repeat 2 46 0 1833 126 44 14 chrX 15715403 15715531 -146884399 - AluJb SINE Alu -187 125 2 229 129 0 15 chrX 15716286 15716325 -146883605 + MIR SINE MIR 106 144 -64 230 244 0 0 chrX 15716411 15716456 -146883474 + polypyrimidine Low_complexity Low_complexity 2 46 0 189 0 0 0 chrX 15718466 15718487 -146881443 + (A)n Simple_repeat Simple_repeat 1 21 0 1238 186 5 18 chrX 15718695 15718915 -146881015 - MER20 DNA MER1_type 0 219 3 243 212 18 90 chrX 15719281 15719356 -146880574 - MIR SINE MIR -64 144 82 2222 92 0 18 chrX 15722720 15723002 -146876928 + AluSx SINE Alu 1 277 -35 231 36 0 0 chrX 15723006 15723034 -146876896 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2209 135 3 0 chrX 15723424 15723735 -146876195 - AluSx SINE Alu 0 312 1 180 163 0 0 chrX 15723745 15723788 -146876142 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 285 276 0 0 chrX 15723790 15723848 -146876082 - L2 LINE L2 -76 3237 3180 327 313 0 10 chrX 15724506 15724602 -146875328 - MIR SINE MIR -86 176 82 1912 115 194 22 chrX 15726148 15726513 -146873417 - MSTA LTR MaLR 0 428 1 225 232 11 105 chrX 15726605 15726700 -146873230 + L2 LINE L2 2956 3041 -231 200 227 23 0 chrX 15726830 15726874 -146873056 + L2 LINE L2 3265 3309 -4 334 266 8 70 chrX 15726949 15727077 -146872853 - MIR3 SINE MIR -3 205 86 1557 60 74 5 chrX 15727459 15727674 -146872256 - MER30 DNA MER1_type 0 230 1 616 216 148 0 chrX 15727682 15727844 -146872086 + MER5A DNA MER1_type 4 189 0 470 227 234 0 chrX 15727850 15727991 -146871939 - MER5B DNA MER1_type 0 178 5 1820 169 3 13 chrX 15729247 15729548 -146870382 - AluJb SINE Alu -14 298 1 374 183 28 0 chrX 15729548 15729619 -146870311 - MIR SINE MIR -55 153 81 205 295 0 0 chrX 15729959 15730020 -146869910 + MIR SINE MIR 87 147 -61 233 109 87 22 chrX 15730312 15730358 -146869572 - L2 LINE L2 0 3313 3265 934 256 32 16 chrX 15731272 15731518 -146868412 + MIR SINE MIR 13 262 0 405 326 0 14 chrX 15731520 15731664 -146868266 + (CAT)n Simple_repeat Simple_repeat 2 143 0 1627 229 99 39 chrX 15733485 15733948 -146865982 - LTR16C LTR ERVL 0 491 1 270 0 0 0 chrX 15734411 15734441 -146865489 + (TAA)n Simple_repeat Simple_repeat 1 30 0 390 129 0 0 chrX 15734778 15734840 -146865090 + (CA)n Simple_repeat Simple_repeat 1 62 0 231 288 98 33 chrX 15734982 15735135 -146864795 - L2 LINE L2 -240 3032 2870 589 89 0 0 chrX 15735196 15735275 -146864655 + MADE1 DNA Mariner 1 79 -1 219 69 0 0 chrX 15735461 15735490 -146864440 + (TCC)n Simple_repeat Simple_repeat 3 31 0 * 295 83 33 33 chrX 15735483 15735543 -146864387 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 180 330 90 0 chrX 15735589 15735689 -146864241 - MIR SINE MIR -1 261 153 1331 225 74 39 chrX 15736217 15736652 -146863278 + MLT1J2 LTR MaLR 1 450 0 237 325 25 0 chrX 15737554 15737634 -146862296 - MIR SINE MIR -67 195 114 2105 251 76 16 chrX 15738754 15739451 -146860479 + L1ME2 LINE L1 5426 6164 0 491 246 49 8 chrX 15740102 15740224 -146859706 + MIR SINE MIR 36 162 -100 233 266 25 63 chrX 15740267 15740346 -146859584 - L3 LINE CR1 -8 1569 1494 1024 153 0 0 chrX 15740390 15740540 -146859390 - FRAM SINE Alu -16 150 1 22 56 0 0 chrX 15740674 15740710 -146859220 + AT_rich Low_complexity Low_complexity 1 36 0 380 263 106 56 chrX 15740825 15741004 -146858926 - L2 LINE L2 -167 3146 2959 219 36 0 0 chrX 15741016 15741044 -146858886 + (TG)n Simple_repeat Simple_repeat 2 29 0 189 94 0 0 chrX 15741045 15741077 -146858853 + (GA)n Simple_repeat Simple_repeat 2 33 0 427 262 75 0 chrX 15741179 15741286 -146858644 - MIR3 SINE MIR -50 158 44 925 279 0 5 chrX 15742563 15742767 -146857163 + MIR SINE MIR 60 262 0 269 143 0 0 chrX 15743162 15743204 -146856726 + 5S rRNA rRNA 1 42 -79 536 179 8 24 chrX 15743207 15743330 -146856600 + MER5B DNA MER1_type 54 174 -4 276 200 0 0 chrX 15743523 15743583 -146856347 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 364 192 50 20 chrX 15745379 15745478 -146854452 + L2 LINE L2 1891 1992 -1322 549 269 236 44 chrX 15745478 15745980 -146853950 + L2 LINE L2 2695 3301 -12 270 143 0 0 chrX 15745981 15746030 -146853900 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1790 123 112 37 chrX 15746112 15746461 -146853469 + THE1C LTR MaLR 1 375 0 605 234 110 55 chrX 15746919 15747137 -146852793 - MIR SINE MIR -21 241 12 940 204 0 52 chrX 15747423 15747654 -146852276 + MER20 DNA MER1_type 1 219 0 198 0 0 0 chrX 15748754 15748776 -146851154 + (A)n Simple_repeat Simple_repeat 1 22 0 252 351 29 17 chrX 15748825 15748999 -146850931 - MER5B DNA MER1_type -1 177 2 215 250 54 0 chrX 15749680 15749736 -146850194 + L2 LINE L2 3251 3309 -4 182 62 31 0 chrX 15749960 15749992 -146849938 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 235 343 10 20 chrX 15751544 15751643 -146848287 + L2 LINE L2 3170 3267 -5 625 163 0 0 chrX 15751679 15751777 -146848153 + MER81 DNA DNA 1 98 -16 1618 194 69 50 chrX 15752514 15752716 -146847214 + L1ME3 LINE L1 5718 5915 -247 2158 128 0 0 chrX 15752716 15753013 -146846917 + AluSx SINE Alu 1 297 -15 1618 194 69 50 chrX 15753013 15753247 -146846683 + L1ME3 LINE L1 5915 6162 0 2013 140 39 14 chrX 15755720 15756077 -146843853 - MER47A DNA MER2_type 0 366 1 967 320 73 5 chrX 15756263 15756644 -146843286 - LTR16C LTR ERVL -6 485 79 2252 187 24 38 chrX 15757323 15757826 -146842104 + L1ME3 LINE L1 5665 6160 -2 347 0 0 23 chrX 15758117 15758161 -146841769 + (CA)n Simple_repeat Simple_repeat 2 44 0 224 231 15 52 chrX 15758258 15758392 -146841538 + (CA)n Simple_repeat Simple_repeat 2 130 0 198 0 0 0 chrX 15758508 15758530 -146841400 + (CAT)n Simple_repeat Simple_repeat 3 24 0 274 299 46 14 chrX 15759163 15759380 -146840550 + L1ME4a LINE L1 5672 5779 -342 254 291 36 18 chrX 15759775 15759885 -146840045 - L2 LINE L2 -1 3271 3160 1104 248 68 40 chrX 15760015 15760442 -146839488 - MLT1J1 LTR MaLR -4 442 4 21 0 0 0 chrX 15760557 15760578 -146839352 + AT_rich Low_complexity Low_complexity 1 21 0 247 293 179 21 chrX 15761096 15761236 -146838694 - L2 LINE L2 0 3272 3111 187 317 125 8 chrX 15761554 15761674 -146838256 - MIR SINE MIR -98 164 31 512 250 40 7 chrX 15762142 15762294 -146837636 + L1ME4a LINE L1 5964 6120 -1 618 227 92 5 chrX 15764191 15764376 -146835554 + L1ME3A LINE L1 5946 6146 -24 501 244 0 42 chrX 15765724 15765843 -146834087 - MER81 DNA DNA 0 114 1 2447 123 22 6 chrX 15766287 15766645 -146833285 + THE1B LTR MaLR 1 364 0 221 296 125 48 chrX 15766691 15767002 -146832928 + L2 LINE L2 2542 2876 -438 455 156 78 0 chrX 15768783 15768860 -146831070 - MER3 DNA MER1_type -126 83 1 664 275 0 25 chrX 15768864 15769064 -146830866 + MIR SINE MIR 56 250 -12 185 163 47 0 chrX 15769353 15769396 -146830534 + T-rich Low_complexity Low_complexity 5 49 0 855 228 107 0 chrX 15772907 15773104 -146826826 + MER20 DNA MER1_type 2 219 0 1265 199 70 0 chrX 15775182 15775484 -146824446 - MER33 DNA MER1_type 0 324 2 300 125 0 0 chrX 15775492 15775532 -146824398 - MER3 DNA MER1_type -169 40 1 2318 158 0 3 chrX 15775731 15776093 -146823837 + MLT1A1 LTR MaLR 5 365 0 204 163 0 0 chrX 15776315 15776358 -146823572 + (TG)n Simple_repeat Simple_repeat 2 44 0 413 242 30 0 chrX 15776970 15777069 -146822861 + MIR SINE MIR 87 188 -74 329 241 36 0 chrX 15777566 15777649 -146822281 - MIR SINE MIR -74 188 103 243 247 225 0 chrX 15777742 15777831 -146822099 + MIR SINE MIR 106 214 -48 91 90 0 0 chrX 15780255 15780500 -146819430 + GC_rich Low_complexity Low_complexity 1 245 0 23 78 0 0 chrX 15780518 15780569 -146819361 + GC_rich Low_complexity Low_complexity 1 51 0 249 246 16 0 chrX 15780671 15780732 -146819198 + (CCG)n Simple_repeat Simple_repeat 1 62 0 207 173 0 0 chrX 15780828 15780880 -146819050 + G-rich Low_complexity Low_complexity 3 54 0 249 301 0 0 chrX 15781278 15781351 -146818579 - L2 LINE L2 0 3272 3200 1460 154 75 0 chrX 15781780 15782033 -146817897 + ORSL DNA AcHobo 4 275 0 271 283 72 133 chrX 15783070 15783416 -146816514 - L2 LINE L2 -1 3271 2947 337 304 149 36 chrX 15783496 15783911 -146816019 - L2 LINE L2 -481 2833 2372 866 278 208 5 chrX 15783930 15784330 -146815600 - LTR16C LTR ERVL -10 481 1 292 349 45 0 chrX 15784331 15784463 -146815467 - L2 LINE L2 -953 2361 2224 498 264 16 0 chrX 15785691 15785816 -146814114 + MER94 DNA DNA 4 130 -4 360 324 27 27 chrX 15785863 15786048 -146813882 + MLT1L LTR MaLR 431 615 0 351 266 0 0 chrX 15787093 15787217 -146812713 + (CA)n Simple_repeat Simple_repeat 2 125 0 22 0 0 0 chrX 15788704 15788726 -146811204 + AT_rich Low_complexity Low_complexity 1 22 0 358 309 37 56 chrX 15788863 15789187 -146810743 - L1ME4a LINE L1 -202 5919 5602 6358 155 7 28 chrX 15789823 15791052 -146808878 - L1MD2 LINE L1 0 6619 5417 8390 231 47 19 chrX 15791063 15793630 -146806300 - L1MD2 LINE L1 -1199 5207 2713 1901 140 0 14 chrX 15793630 15793957 -146805973 - AluSx SINE Alu 0 323 1 8390 231 47 19 chrX 15793957 15796318 -146803612 - L1MD2 LINE L1 -3693 2713 11 692 219 12 6 chrX 15796318 15796482 -146803448 + MER97a DNA MER1_type? 728 892 -2 296 213 38 25 chrX 15799099 15799179 -146800751 + Charlie7 DNA MER1_type 1 81 -2531 189 0 0 0 chrX 15799183 15799204 -146800726 + (TAGA)n Simple_repeat Simple_repeat 1 21 0 1558 236 62 24 chrX 15799206 15799485 -146800445 + Charlie7 DNA MER1_type 126 432 -2180 2357 38 52 7 chrX 15799485 15799774 -146800156 + AluY SINE Alu 1 302 -9 1558 236 62 24 chrX 15799774 15799961 -146799969 + Charlie7 DNA MER1_type 432 610 -2002 1138 264 42 27 chrX 15799971 15800202 -146799728 - LTR16C LTR ERVL 0 491 252 2672 107 25 3 chrX 15800202 15800558 -146799372 - THE1B LTR MaLR 0 364 1 1138 264 42 27 chrX 15800558 15800660 -146799270 - LTR16C LTR ERVL -239 252 153 771 74 0 0 chrX 15800725 15800833 -146799097 - LTR9B LTR ERV1 -86 558 451 286 244 22 11 chrX 15800977 15801067 -146798863 + Charlie7 DNA MER1_type 634 724 -1888 * 633 205 29 44 chrX 15801050 15801255 -146798675 + Charlie7 DNA MER1_type 2410 2611 -1 1747 192 3 0 chrX 15801430 15801727 -146798203 - AluJo SINE Alu -14 298 1 501 232 16 20 chrX 15802451 15802702 -146797228 + GA-rich Low_complexity Low_complexity 1 250 0 181 159 45 0 chrX 15802818 15802862 -146797068 - L2 LINE L2 -212 3060 3015 885 167 13 0 chrX 15802875 15803025 -146796905 - MER5A DNA MER1_type -34 155 4 354 98 0 0 chrX 15803868 15803919 -146796011 + (CA)n Simple_repeat Simple_repeat 1 51 0 548 250 24 62 chrX 15804658 15804866 -146795064 + MIR SINE MIR 63 262 0 2227 135 0 0 chrX 15804960 15805272 -146794658 + AluSx SINE Alu 1 312 0 10904 203 82 21 chrX 15805969 15809430 -146790500 + L1MD1 LINE L1 15 3683 -2857 2108 104 23 10 chrX 15809430 15809737 -146790193 + AluSx SINE Alu 1 311 -1 6262 189 48 30 chrX 15809737 15810577 -146789353 + L1MD1 LINE L1 3965 4789 -1847 2173 120 3 0 chrX 15810577 15810869 -146789061 + AluSx SINE Alu 1 293 -19 6262 189 48 30 chrX 15810869 15812649 -146787281 + L1MD1 LINE L1 4789 6633 -3 1871 269 55 3 chrX 15812733 15813302 -146786628 - L2 LINE L2 -704 2610 2013 195 42 0 0 chrX 15813336 15813360 -146786570 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 279 333 20 48 chrX 15813362 15813509 -146786421 + L2 LINE L2 2189 2331 -983 829 207 54 34 chrX 15813509 15813751 -146786179 - MLT1F1 LTR MaLR 0 567 313 508 200 20 10 chrX 15815025 15815125 -146784805 + LTR67 LTR ERVL 70 170 -387 231 224 0 53 chrX 15815067 15815143 -146784787 + MLT1J LTR MaLR 110 181 -330 * 3316 263 93 16 chrX 15815143 15816489 -146783441 - L2 LINE L2 -12 3301 1849 1019 213 80 0 chrX 15816743 15817006 -146782924 + L2 LINE L2 1297 1580 -1734 481 236 9 0 chrX 15817017 15817123 -146782807 - MER45A DNA AcHobo -26 152 46 251 239 113 0 chrX 15819779 15819850 -146780080 - MER45A DNA AcHobo -97 81 3 673 312 75 13 chrX 15819852 15820160 -146779770 + L2 LINE L2 1572 1898 -1416 1310 161 0 22 chrX 15821141 15821500 -146778430 + AluJb SINE Alu 82 312 0 1605 243 45 56 chrX 15821501 15822015 -146777915 + L1MC4a LINE L1 5322 5829 -1979 1198 181 5 14 chrX 15822469 15822684 -146777246 - MER20 DNA MER1_type 0 219 7 197 275 14 14 chrX 15822689 15822758 -146777172 + MER5B DNA MER1_type 6 74 -104 515 260 50 64 chrX 15822915 15823134 -146776796 + MER20B DNA MER1_type 1 216 -3 2262 186 48 30 chrX 15823289 15823826 -146776104 - MER69B DNA AcHobo -19 1207 661 1594 204 101 21 chrX 15823830 15824092 -146775838 - MLT1C LTR MaLR 0 467 157 2659 104 23 0 chrX 15824092 15824446 -146775484 - THE1B LTR MaLR -2 362 1 1594 204 101 21 chrX 15824446 15824609 -146775321 - MLT1C LTR MaLR -310 157 8 2175 253 24 33 chrX 15824629 15824749 -146775181 - MER69B DNA AcHobo -98 79 457 2837 129 39 0 chrX 15824749 15825159 -146774771 + MSTC LTR MaLR 1 426 -2 2175 253 24 33 chrX 15825159 15825613 -146774317 - MER69B DNA AcHobo 281 458 2 346 299 198 5 chrX 15825628 15825825 -146774105 + L3 LINE CR1 374 608 -969 388 265 30 66 chrX 15825826 15825992 -146773938 + L2 LINE L2 2854 3013 -300 498 262 10 0 chrX 15826132 15826235 -146773695 - MER81 DNA DNA -3 111 8 1239 222 45 62 chrX 15826241 15826593 -146773337 + MLT1J1 LTR MaLR 101 446 0 762 273 24 57 chrX 15826593 15826833 -146773097 + L2 LINE L2 3027 3257 -56 1495 134 0 0 chrX 15826833 15827042 -146772888 + MER3 DNA MER1_type 1 209 0 762 273 24 57 chrX 15827042 15827098 -146772832 + L2 LINE L2 3257 3313 0 6852 112 8 5 chrX 15827314 15830541 -146769389 - L1PA11 LINE L1 -4 6170 2857 438 243 5 3 chrX 15830784 15830905 -146769025 + MLT1J1 LTR MaLR 1 121 -325 1147 288 65 83 chrX 15830913 15831240 -146768690 - L1MEd LINE L1 -1027 1463 1132 450 0 0 0 chrX 15831240 15831290 -146768640 + (TC)n Simple_repeat Simple_repeat 1 50 0 1147 288 65 83 chrX 15831290 15832305 -146767625 - L1MEd LINE L1 -1358 1132 47 522 328 61 0 chrX 15833912 15834092 -146765838 + LTR16C LTR ERVL 3 193 -298 * 788 253 5 0 chrX 15834066 15834252 -146765678 + LTR16C LTR ERVL 305 491 0 462 229 130 0 chrX 15834765 15834896 -146765034 - MIR SINE MIR -15 247 100 617 195 0 16 chrX 15835870 15835993 -146763937 - L1ME3A LINE L1 -6 6164 6044 189 339 0 0 chrX 15836104 15836160 -146763770 - MIR SINE MIR -81 127 72 225 303 20 20 chrX 15836671 15836770 -146763160 + MLT1I LTR MaLR 107 205 -204 310 198 100 69 chrX 15836796 15836927 -146763003 + MLT1J2 LTR MaLR 279 408 -38 1740 175 0 7 chrX 15836992 15837277 -146762653 - AluJo SINE Alu -23 289 7 881 284 25 0 chrX 15837859 15838095 -146761835 + MIR SINE MIR 20 261 -1 850 160 7 0 chrX 15838449 15838599 -146761331 + L1MC3 LINE L1 6939 7089 -696 362 229 32 21 chrX 15838603 15838696 -146761234 + MLT1F1 LTR MaLR 50 154 -395 2908 156 88 7 chrX 15838697 15839241 -146760689 + L1MC3 LINE L1 7189 7776 -9 3234 170 68 38 chrX 15839244 15839872 -146760058 + MER82 DNA MER2_type 7 653 0 2357 84 3 16 chrX 15840023 15840332 -146759598 - AluY SINE Alu -6 305 1 441 0 0 0 chrX 15840372 15840421 -146759509 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 2149 88 0 66 chrX 15840423 15840728 -146759202 - AluSg SINE Alu -25 285 1 1816 136 32 6 chrX 15840754 15841070 -146758860 + MER33 DNA MER1_type 1 324 0 482 264 107 13 chrX 15841139 15841298 -146758632 - MIR3 SINE MIR -32 176 3 957 123 41 12 chrX 15841428 15841599 -146758331 + MER53 DNA DNA 2 177 -12 556 154 94 17 chrX 15841595 15841712 -146758218 - MER53 DNA DNA -63 126 1 * 975 96 7 0 chrX 15842275 15842410 -146757520 + MER97b DNA MER1_type? 44 179 -874 239 289 74 66 chrX 15842669 15842907 -146757023 + MIR SINE MIR 3 241 -21 1101 308 50 17 chrX 15842935 15843400 -146756530 - MLT1J LTR MaLR -31 480 1 494 277 23 15 chrX 15844420 15844550 -146755380 - MIR3 SINE MIR -28 180 50 309 335 158 28 chrX 15845613 15846260 -146753670 + L2 LINE L2 1769 2499 -815 610 238 99 79 chrX 15846393 15846544 -146753386 - L1ME4a LINE L1 -112 6009 5862 498 274 26 32 chrX 15846544 15846734 -146753196 - MER5A DNA MER1_type 0 189 1 610 238 99 79 chrX 15846734 15846986 -146752944 - L1ME4a LINE L1 -259 5862 5598 393 230 22 28 chrX 15846996 15847045 -146752885 + (TTATA)n Simple_repeat Simple_repeat 1 49 -128 1851 157 3 20 chrX 15847045 15847336 -146752594 + AluJb SINE Alu 1 288 -24 200 57 0 29 chrX 15847336 15847371 -146752559 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 393 230 22 28 chrX 15847378 15847506 -146752424 + (TTATA)n Simple_repeat Simple_repeat 49 177 0 28 0 0 0 chrX 15847512 15847540 -146752390 + AT_rich Low_complexity Low_complexity 1 28 0 402 329 79 12 chrX 15847554 15847794 -146752136 - L3 LINE CR1 -730 847 592 738 271 104 36 chrX 15848105 15848470 -146751460 - MLT1H LTR MaLR -131 418 29 298 269 227 0 chrX 15849513 15849654 -146750276 - MER91A DNA MER1_type -6 190 18 807 249 31 35 chrX 15849830 15850059 -146749871 - MIR SINE MIR 0 262 35 246 116 0 0 chrX 15850151 15850194 -146749736 + (CA)n Simple_repeat Simple_repeat 1 43 0 650 191 9 17 chrX 15850329 15850444 -146749486 - MER81 DNA DNA 0 114 1 197 121 0 0 chrX 15850525 15850558 -146749372 - L2 LINE L2 -2 3311 3279 764 255 33 45 chrX 15850688 15850931 -146748999 - MIR SINE MIR -20 242 3 763 223 17 23 chrX 15851029 15851204 -146748726 - MER5B DNA MER1_type 0 178 5 397 242 185 32 chrX 15851257 15851414 -146748516 - MER5A DNA MER1_type 0 189 9 431 169 52 0 chrX 15851431 15851508 -146748422 + MER5A DNA MER1_type 11 91 -98 728 179 205 26 chrX 15851926 15852116 -146747814 - MIR SINE MIR -10 252 29 2133 197 49 14 chrX 15852185 15852631 -146747299 - MLT1C LTR MaLR 0 467 6 1043 166 0 18 chrX 15852935 15853104 -146746826 - FRAM SINE Alu -13 163 1 1848 166 3 46 chrX 15854854 15855179 -146744751 + AluJb SINE Alu 1 311 -1 364 211 14 0 chrX 15855205 15855276 -146744654 - Charlie2 DNA MER1_type -4 2858 2787 642 208 122 35 chrX 15855278 15855310 -146744620 - L1ME2 LINE L1 -7 6157 6129 6218 121 13 8 chrX 15855310 15857074 -146742856 - L1PA15 LINE L1 -7 6158 4389 642 208 122 35 chrX 15857074 15857238 -146742692 - L1ME2 LINE L1 -35 6129 5944 311 311 145 26 chrX 15857723 15857916 -146742014 + MIR SINE MIR 8 223 -39 959 188 46 5 chrX 15858838 15859035 -146740895 - MLT1J2 LTR MaLR -203 247 43 387 313 114 40 chrX 15859119 15859331 -146740599 - L2 LINE L2 -183 3089 2894 2536 170 21 16 chrX 15859331 15859761 -146740169 + MSTB1 LTR MaLR 1 432 0 387 313 114 40 chrX 15859761 15860107 -146739823 - L2 LINE L2 -378 2894 2454 501 258 75 0 chrX 15860128 15860248 -146739682 - L2 LINE L2 -1 3312 3184 464 280 0 8 chrX 15860313 15860445 -146739485 - L2 LINE L2 -968 2346 2216 921 261 111 65 chrX 15860445 15860693 -146739237 - MLT1K LTR MaLR -20 568 333 1900 167 3 0 chrX 15860693 15860987 -146738943 + AluJo SINE Alu 1 295 -17 921 261 111 65 chrX 15860987 15861002 -146738928 - MLT1K LTR MaLR -255 333 320 189 0 0 0 chrX 15861002 15861023 -146738907 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 921 261 111 65 chrX 15861023 15861191 -146738739 - MLT1K LTR MaLR -268 320 116 430 310 66 29 chrX 15861293 15861535 -146738395 - L2 LINE L2 -1124 2190 1940 1764 138 0 66 chrX 15861844 15862149 -146737781 + AluSx SINE Alu 1 285 -27 306 106 0 0 chrX 15862149 15862196 -146737734 + (GGA)n Simple_repeat Simple_repeat 1 47 0 938 233 116 13 chrX 15862478 15862710 -146737220 - MIR SINE MIR 0 262 7 715 216 156 37 chrX 15863223 15863492 -146736438 - L1MC5 LINE L1 -53 7908 7608 491 255 27 16 chrX 15863585 15863769 -146736161 - L1MC5 LINE L1 -35 7926 7741 455 223 11 0 chrX 15864663 15864757 -146735173 + L1ME3 LINE L1 5542 5636 -534 377 218 82 0 chrX 15864760 15864870 -146735060 + L1ME3 LINE L1 5956 6074 -88 2313 47 4 7 chrX 15865177 15865454 -146734476 - AluY SINE Alu -1 310 35 1091 261 112 24 chrX 15867574 15867957 -146731973 + LTR16C LTR ERVL 75 491 0 629 243 80 26 chrX 15867979 15868205 -146731725 + MIR SINE MIR 25 262 0 389 189 33 22 chrX 15868271 15868361 -146731569 - L1MD1 LINE L1 -10 6232 6142 342 259 12 0 chrX 15868364 15868449 -146731481 - L1MD3 LINE L1 -112 7883 7798 185 292 10 31 chrX 15870038 15870134 -146729796 + L2 LINE L2 3159 3252 -61 281 26 0 26 chrX 15870206 15870245 -146729685 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2827 104 0 3 chrX 15870319 15870684 -146729246 - THE1B LTR MaLR 0 364 1 1136 291 76 8 chrX 15870782 15871199 -146728731 + LTR16A LTR ERVL 1 454 -3 425 233 125 25 chrX 15871222 15871342 -146728588 + L2 LINE L2 3182 3313 0 306 285 73 32 chrX 15871384 15871507 -146728423 - MIR SINE MIR -120 142 15 779 305 95 29 chrX 15871892 15872377 -146727553 - LTR33 LTR ERVL -4 517 1 455 253 37 58 chrX 15872474 15872659 -146727271 - MIR SINE MIR -49 159 32 465 124 237 0 chrX 15872952 15873049 -146726881 + MER3 DNA MER1_type 49 168 -41 269 235 0 0 chrX 15873083 15873134 -146726796 + MLT1J LTR MaLR 75 125 -442 2589 185 51 2 chrX 15873137 15873650 -146726280 + L1MC3 LINE L1 7195 7732 -53 5665 112 12 12 chrX 15873650 15874475 -146725455 + L1MA4A LINE L1 5478 6302 -1 349 121 52 0 chrX 15874485 15874543 -146725387 + Charlie5 DNA MER1_type 2328 2388 -224 423 0 0 0 chrX 15875390 15875437 -146724493 + (CA)n Simple_repeat Simple_repeat 1 47 0 752 283 99 78 chrX 15875614 15876008 -146723922 - L1MEd LINE L1 -844 1646 1262 3349 116 37 8 chrX 15876008 15876516 -146723414 - L1MC1 LINE L1 0 6333 5811 752 283 99 78 chrX 15876516 15876623 -146723307 - L1MEd LINE L1 -1228 1262 1159 414 0 0 0 chrX 15876623 15876669 -146723261 + (TG)n Simple_repeat Simple_repeat 1 46 0 752 283 99 78 chrX 15876669 15876808 -146723122 - L1MEd LINE L1 -1331 1159 1748 1230 213 5 9 chrX 15876808 15877029 -146722901 + MER58A DNA MER1_type 1 220 -4 752 283 99 78 chrX 15877029 15877784 -146722146 - L1MEd LINE L1 -741 1749 1012 226 278 40 35 chrX 15877881 15878054 -146721876 - L1MEd LINE L1 -5215 904 731 468 0 0 0 chrX 15878554 15878606 -146721324 + (CA)n Simple_repeat Simple_repeat 2 53 0 283 258 136 49 chrX 15879699 15880045 -146719885 - L1MC4 LINE L1 -65 7977 7469 346 216 98 29 chrX 15880046 15880148 -146719782 - MIR SINE MIR -89 173 65 456 173 13 0 chrX 15880307 15880382 -146719548 + MER3 DNA MER1_type 10 85 -124 232 294 71 48 chrX 15880544 15880670 -146719260 + LTR67 LTR ERVL 428 556 -1 1241 259 58 14 chrX 15880764 15881123 -146718807 + MLT1J LTR MaLR 128 502 -9 1687 285 111 21 chrX 15881355 15881970 -146717960 + MER115 DNA AcHobo 23 692 -1 408 281 47 47 chrX 15882211 15882382 -146717548 - MER5B DNA MER1_type -7 171 1 1877 194 84 16 chrX 15882706 15883077 -146716853 - MSTD LTR MaLR 0 396 1 192 286 48 16 chrX 15883077 15883130 -146716800 + L2 LINE L2 3256 3313 0 5682 109 4 6 chrX 15883133 15883957 -146715973 - L1PA15 LINE L1 0 6165 5341 203 224 13 118 chrX 15885388 15885464 -146714466 - MIR SINE MIR -84 124 57 579 217 134 19 chrX 15886737 15886894 -146713036 + MER5B DNA MER1_type 1 175 -3 681 221 175 0 chrX 15886905 15887059 -146712871 - MER5A DNA MER1_type 0 189 9 2074 136 0 10 chrX 15888623 15888933 -146710997 + AluJb SINE Alu 1 307 -5 209 354 24 0 chrX 15888973 15889055 -146710875 - L3 LINE CR1 -9 1568 1485 225 169 479 0 chrX 15889217 15889288 -146710642 - MER5A DNA MER1_type -78 111 7 2822 186 36 19 chrX 15889562 15890090 -146709840 - MLT1F LTR MaLR -2 540 4 582 286 118 35 chrX 15891331 15891586 -146708344 + MLT1J2 LTR MaLR 57 332 -118 2244 107 10 7 chrX 15892016 15892326 -146707604 + AluY SINE Alu 1 311 0 22 0 0 0 chrX 15892773 15892795 -146707135 + AT_rich Low_complexity Low_complexity 1 22 0 738 188 227 0 chrX 15893287 15893441 -146706489 + MER5A DNA MER1_type 1 189 0 237 296 11 11 chrX 15894038 15894126 -146705804 + CT-rich Low_complexity Low_complexity 3 90 0 238 277 73 58 chrX 15894148 15894285 -146705645 + MER5B DNA MER1_type 3 141 -37 382 223 36 45 chrX 15894169 15894281 -146705649 - MER5A DNA MER1_type -29 160 50 2215 95 3 0 chrX 15894673 15895009 -146704921 + AluSq SINE Alu 1 337 0 999 261 151 13 chrX 15895183 15895565 -146704365 + LTR16C LTR ERVL 1 435 -56 1356 199 27 15 chrX 15895565 15895827 -146704103 + Tigger7 DNA MER2_type 1 265 -468 631 131 0 20 chrX 15895830 15895929 -146704001 + Tigger7 DNA MER2_type 2490 2586 -1 354 137 0 0 chrX 15895930 15895981 -146703949 + LTR16C LTR ERVL 434 484 -7 291 311 49 24 chrX 15896470 15896634 -146703296 + L2 LINE L2 2587 2754 -560 258 336 36 29 chrX 15897006 15897143 -146702787 + L2 LINE L2 3176 3313 0 656 112 10 10 chrX 15897783 15897903 -146702027 + FLAM_C SINE Alu 32 143 0 697 300 22 9 chrX 15897990 15898213 -146701717 - MIR SINE MIR -14 248 23 539 320 34 17 chrX 15898278 15898456 -146701474 + MIR3 SINE MIR 23 203 -5 1401 231 44 33 chrX 15898782 15899142 -146700788 - MLT1G LTR MaLR 0 590 227 1014 42 6 4 chrX 15899186 15899203 -146700727 + L1P3 LINE L1 5629 5644 -510 2942 74 3 3 chrX 15899203 15899569 -146700361 - L1PA7 LINE L1 -1 6153 5788 1014 42 6 4 chrX 15899569 15899683 -146700247 + L1PA7 LINE L1 5644 5762 -392 576 306 61 15 chrX 15899685 15899881 -146700049 - MLT1G LTR MaLR -321 234 30 264 307 53 0 chrX 15899908 15899983 -146699947 + L2 LINE L2 3169 3247 -25 385 249 0 109 chrX 15900407 15900608 -146699322 + C-rich Low_complexity Low_complexity 2 180 0 251 292 28 0 chrX 15900974 15901046 -146698884 - MIR3 SINE MIR -26 182 109 595 304 91 12 chrX 15901055 15901298 -146698632 - MIR SINE MIR 0 262 1 447 281 31 31 chrX 15901620 15901780 -146698150 + MIR SINE MIR 103 262 0 304 279 0 0 chrX 15901807 15901875 -146698055 + L2 LINE L2 3204 3271 -1 180 0 0 0 chrX 15902088 15902108 -146697822 + (A)n Simple_repeat Simple_repeat 1 20 0 1634 286 44 24 chrX 15902137 15902641 -146697289 - MLT1K LTR MaLR -8 580 67 508 270 29 17 chrX 15902811 15902985 -146696945 + MER112 DNA MER1_type 1 176 -84 747 237 87 138 chrX 15903045 15903517 -146696413 - MLT1J2 LTR MaLR -2 448 1 466 258 227 15 chrX 15904344 15904542 -146695388 - MIR SINE MIR -22 240 1 259 268 39 105 chrX 15904577 15904730 -146695200 - MIR SINE MIR -30 232 90 1323 240 88 6 chrX 15904741 15905070 -146694860 - MER63 DNA MER1_type -11 1051 696 789 220 162 0 chrX 15905890 15906081 -146693849 - MIR SINE MIR -21 241 20 196 350 75 62 chrX 15906164 15906324 -146693606 + L2 LINE L2 3102 3263 -9 311 91 0 0 chrX 15906333 15906377 -146693553 - MIR SINE MIR -59 149 106 231 36 0 0 chrX 15907893 15907921 -146692009 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 580 243 85 0 chrX 15908797 15908974 -146690956 - MER117 DNA MER1_type 0 197 6 211 278 146 56 chrX 15908980 15909124 -146690806 - MIR3 SINE MIR -51 157 1 211 213 197 0 chrX 15909132 15909193 -146690737 + L2 LINE L2 3179 3251 -21 1107 192 0 19 chrX 15909198 15909406 -146690524 - AluJb SINE Alu -23 289 86 1100 186 73 0 chrX 15910028 15910232 -146689698 + MER20 DNA MER1_type 1 219 0 231 308 48 67 chrX 15910873 15910977 -146688953 + L2 LINE L2 3201 3302 -11 855 203 90 47 chrX 15910982 15911238 -146688692 + L1ME3 LINE L1 5565 5831 -331 622 261 20 0 chrX 15911302 15911455 -146688475 - MIR SINE MIR -10 252 97 735 165 38 15 chrX 15911507 15911779 -146688151 - MLT1A1 LTR MaLR 0 365 1 222 176 0 0 chrX 15912543 15912594 -146687336 + GA-rich Low_complexity Low_complexity 1 51 0 1007 244 136 38 chrX 15913118 15913671 -146686259 - L1ME4a LINE L1 -5 6116 5510 881 168 189 5 chrX 15914976 15915161 -146684769 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 15915570 15915590 -146684340 + (TAA)n Simple_repeat Simple_repeat 2 21 0 279 190 4 16 chrX 15915697 15915779 -146684151 - L1ME3 LINE L1 -211 5951 5870 2007 145 0 16 chrX 15915805 15916116 -146683814 - AluSx SINE Alu 0 312 7 1045 313 47 17 chrX 15916155 15916682 -146683248 - L1ME3 LINE L1 -321 5849 5307 839 186 13 19 chrX 15916690 15916846 -146683084 + MLT1E LTR MaLR 1 155 -438 487 300 65 24 chrX 15917074 15917414 -146682516 - L1ME3 LINE L1 -1430 4716 4363 25 0 0 0 chrX 15917553 15917578 -146682352 + AT_rich Low_complexity Low_complexity 1 25 0 479 251 39 50 chrX 15918872 15919051 -146680879 - MLT1J2 LTR MaLR -2 448 272 431 236 22 0 chrX 15919066 15919155 -146680775 + Charlie4a DNA MER1_type 2 92 -416 2480 173 26 16 chrX 15919163 15919655 -146680275 - MLT1D LTR MaLR -8 497 1 800 203 135 69 chrX 15919655 15919923 -146680007 + Charlie4a DNA MER1_type 88 387 -1574 2129 140 0 3 chrX 15919923 15920231 -146679699 - AluSx SINE Alu -5 307 1 800 203 135 69 chrX 15920231 15920322 -146679608 + Charlie4a DNA MER1_type 387 471 -37 625 222 90 14 chrX 15920489 15920633 -146679297 - MER5A DNA MER1_type -6 183 29 396 240 200 0 chrX 15921582 15921707 -146678223 + MIR SINE MIR 20 169 -93 589 209 8 30 chrX 15924234 15924368 -146675562 + L2 LINE L2 3180 3310 -3 295 267 216 0 chrX 15924919 15925035 -146674895 + MER5A DNA MER1_type 47 187 -2 200 111 28 0 chrX 15925345 15925381 -146674549 + T-rich Low_complexity Low_complexity 1 37 0 625 209 79 40 chrX 15925454 15925631 -146674299 + MER63A DNA MER1_type 27 210 0 1413 346 117 25 chrX 15925632 15926499 -146673431 - L3 LINE CR1 -411 1166 221 934 271 9 5 chrX 15926660 15926874 -146673056 + MIR SINE MIR 27 241 -21 207 375 27 9 chrX 15926925 15927037 -146672893 - L3 LINE CR1 -1417 160 47 198 314 85 34 chrX 15927326 15927444 -146672486 + MIR3 SINE MIR 45 168 -40 1461 154 14 107 chrX 15927448 15927804 -146672126 + MER33 DNA MER1_type 2 324 0 204 111 0 0 chrX 15928496 15928532 -146671398 + (TG)n Simple_repeat Simple_repeat 1 36 0 195 42 0 0 chrX 15928531 15928555 -146671375 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 2652 24 0 3 chrX 15929240 15929537 -146670393 + AluY SINE Alu 1 296 -15 193 333 61 18 chrX 15929978 15930092 -146669838 - L2 LINE L2 -13 3259 3141 360 271 17 8 chrX 15930510 15930628 -146669302 + MLT1I LTR MaLR 1 119 -290 912 294 81 67 chrX 15930640 15932009 -146667921 + ERVL LTR ERVL 3667 4979 -17 349 294 75 44 chrX 15933144 15933383 -146666547 - MLT1L LTR MaLR -195 393 139 356 186 174 0 chrX 15933386 15933472 -146666458 - L1ME3A LINE L1 -6 6164 6064 1599 193 143 78 chrX 15933514 15933990 -146665940 - Charlie4a DNA MER1_type -1 507 1 527 292 7 26 chrX 15934085 15934239 -146665691 - L2 LINE L2 0 3313 3163 1892 186 80 0 chrX 15934480 15934818 -146665112 + MLT1A1 LTR MaLR 1 365 0 277 333 14 35 chrX 15935034 15935175 -146664755 - L2 LINE L2 -2 3270 3133 180 0 0 0 chrX 15935534 15935554 -146664376 + (A)n Simple_repeat Simple_repeat 1 20 0 830 194 73 6 chrX 15935736 15935901 -146664029 + MER5B DNA MER1_type 3 178 0 1732 214 27 0 chrX 15935911 15936242 -146663688 - MER58B DNA MER1_type 0 341 2 240 269 0 0 chrX 15936771 15936823 -146663107 + GA-rich Low_complexity Low_complexity 2 53 0 311 189 0 14 chrX 15937235 15937309 -146662621 + GA-rich Low_complexity Low_complexity 1 73 0 643 231 163 0 chrX 15937417 15937577 -146662353 - MER5A DNA MER1_type 0 189 4 1358 162 97 17 chrX 15937589 15937879 -146662051 + MER33 DNA MER1_type 1 313 -11 5868 63 1 6 chrX 15937939 15938642 -146661288 + L1PA6 LINE L1 5455 6154 0 24 32 0 0 chrX 15938677 15938708 -146661222 + AT_rich Low_complexity Low_complexity 1 31 0 1876 85 33 0 chrX 15938729 15938999 -146660931 - L1MA1 LINE L1 -64 6238 5960 4715 118 16 20 chrX 15939143 15939844 -146660086 + L1PA15 LINE L1 5468 6165 0 747 275 59 8 chrX 15939968 15940204 -146659726 + MIR SINE MIR 10 257 -5 1305 255 50 13 chrX 15940330 15940707 -146659223 + L1ME3A LINE L1 5765 6155 -15 457 241 0 0 chrX 15940821 15940904 -146659026 + FRAM/FAM SINE Alu 1 83 -93 2417 74 10 0 chrX 15941161 15941458 -146658472 - AluSc SINE Alu -9 300 1 28 29 0 0 chrX 15941712 15941747 -146658183 + AT_rich Low_complexity Low_complexity 1 35 0 1981 248 22 0 chrX 15942106 15942517 -146657413 + LTR16C LTR ERVL 72 491 0 448 299 132 0 chrX 15943331 15943528 -146656402 + MLT1L LTR MaLR 339 561 -54 397 178 0 0 chrX 15943570 15943643 -146656287 - L1ME3A LINE L1 -5 6165 6093 1006 245 42 0 chrX 15943697 15943934 -146655996 + MIR SINE MIR 11 257 -5 234 335 77 26 chrX 15944451 15944606 -146655324 - MIR3 SINE MIR -9 199 37 243 0 0 0 chrX 15945154 15945181 -146654749 + (GA)n Simple_repeat Simple_repeat 1 27 0 34 0 0 0 chrX 15945445 15945479 -146654451 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chrX 15945596 15945620 -146654310 + AT_rich Low_complexity Low_complexity 1 24 0 867 258 18 5 chrX 15948026 15948243 -146651687 + MIR SINE MIR 12 231 -31 2633 130 6 3 chrX 15948374 15948736 -146651194 + THE1B LTR MaLR 2 364 0 433 233 114 52 chrX 15950097 15950128 -146649802 + MLT1C LTR MaLR 130 158 -309 2327 131 121 18 chrX 15950128 15950516 -146649414 + MSTA LTR MaLR 1 428 0 433 233 114 52 chrX 15950516 15950694 -146649236 + MLT1C LTR MaLR 158 352 -115 386 317 139 11 chrX 15950712 15950892 -146649038 - L2 LINE L2 -210 3062 2860 724 135 0 9 chrX 15950905 15951016 -146648914 + MLT1C LTR MaLR 356 465 -2 219 283 17 0 chrX 15952453 15952513 -146647417 + L2 LINE L2 3020 3080 -233 1195 165 23 23 chrX 15953118 15953336 -146646594 - MER20 DNA MER1_type 0 219 2 342 293 245 20 chrX 15953795 15953942 -146645988 + MIR3 SINE MIR 18 197 -11 269 260 31 0 chrX 15955266 15955362 -146644568 + (TA)n Simple_repeat Simple_repeat 2 100 0 1285 242 144 31 chrX 15955437 15955917 -146644013 + MLT1H1 LTR MaLR 11 544 -11 769 265 51 43 chrX 15955955 15956212 -146643718 - MIR SINE MIR 0 262 4 280 317 21 0 chrX 15956224 15956332 -146643598 - L1ME LINE L1 -343 5778 5669 327 290 37 9 chrX 15957259 15957366 -146642564 - MIR3 SINE MIR -22 186 77 278 108 0 154 chrX 15957368 15957433 -146642497 - MLT1H LTR MaLR -3 546 492 521 217 75 19 chrX 15957656 15957815 -146642115 - MLT1H LTR MaLR -272 162 2 206 296 19 0 chrX 15957820 15957874 -146642056 - MIR SINE MIR -130 78 24 539 239 63 13 chrX 15958193 15958352 -146641578 + MLT1H LTR MaLR 1 167 -382 349 309 18 18 chrX 15958426 15958536 -146641394 + MIR SINE MIR 21 130 -78 601 249 30 24 chrX 15958746 15958915 -146641015 - MIR SINE MIR -91 171 2 310 342 9 0 chrX 15958923 15959034 -146640896 + MIR SINE MIR 147 258 -4 211 294 96 64 chrX 15959139 15959330 -146640600 - MIR SINE MIR -43 219 23 1235 132 107 43 chrX 15959393 15959674 -146640256 - MER33 DNA MER1_type -5 319 21 296 290 131 28 chrX 15960703 15960848 -146639082 - MIR SINE MIR -11 251 92 808 235 25 48 chrX 15961422 15961746 -146638184 - HsTC2 DNA Tc2 -122 1776 1235 420 169 136 93 chrX 15961748 15961866 -146638064 - HsTC2 DNA Tc2 -1747 151 29 417 211 94 23 chrX 15963676 15963804 -146636126 - MLT1H LTR MaLR -3 546 410 631 276 96 48 chrX 15963856 15964128 -146635802 - MLT1H LTR MaLR -242 307 23 374 289 42 48 chrX 15964160 15964471 -146635459 - L1M4 LINE L1 -1428 4718 4410 304 315 15 46 chrX 15964757 15964887 -146635043 - MIR SINE MIR -50 212 87 531 259 53 42 chrX 15965141 15965330 -146634600 + MIR SINE MIR 20 210 -52 1873 174 0 22 chrX 15965424 15965735 -146634195 - AluJb SINE Alu -8 304 1 1784 159 0 33 chrX 15966348 15966682 -146633248 - MER33 DNA MER1_type 0 324 2 862 242 10 25 chrX 15967439 15967637 -146632293 + MER91A DNA MER1_type 1 195 -1 253 276 238 0 chrX 15967943 15968048 -146631882 + L2 LINE L2 3171 3300 -13 1045 219 60 8 chrX 15968116 15968381 -146631549 + L1MC5 LINE L1 7650 7928 -33 898 317 105 17 chrX 15968396 15968518 -146631412 - L2 LINE L2 -2 3311 3201 183 100 0 0 chrX 15968518 15968548 -146631382 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 898 317 105 17 chrX 15968548 15968913 -146631017 - L2 LINE L2 -112 3201 2782 1453 257 19 6 chrX 15968980 15969291 -146630639 + MLT1I LTR MaLR 95 409 0 255 196 19 131 chrX 15969312 15969419 -146630511 + MER103 DNA DNA 70 164 -2 2791 90 8 19 chrX 15969448 15969816 -146630114 + THE1B LTR MaLR 1 364 0 201 74 0 0 chrX 15970143 15970170 -146629760 + (TC)n Simple_repeat Simple_repeat 2 28 0 320 329 81 12 chrX 15970349 15970510 -146629420 - L3 LINE CR1 -856 721 550 6023 115 12 2 chrX 15971700 15972883 -146627047 - L1PA16 LINE L1 0 6166 4975 850 177 25 13 chrX 15972937 15973095 -146626835 + MLT1D LTR MaLR 1 160 -345 1005 226 58 11 chrX 15973109 15973370 -146626560 + L1ME3A LINE L1 5698 5970 -200 439 250 25 17 chrX 15973450 15973570 -146626360 + L1ME3A LINE L1 6006 6126 -44 2078 108 3 29 chrX 15973595 15973910 -146626020 + AluSx SINE Alu 1 307 -5 398 179 8 137 chrX 15974066 15974183 -146625747 + L1MC4a LINE L1 5505 5606 -2202 1021 116 0 0 chrX 15974183 15974312 -146625618 + AluJo SINE Alu 1 129 -173 281 169 0 0 chrX 15974312 15974371 -146625559 + (TA)n Simple_repeat Simple_repeat 1 59 0 1223 121 0 0 chrX 15974371 15974536 -146625394 + AluJo SINE Alu 133 297 -15 1361 248 114 11 chrX 15974543 15975095 -146624835 + L1MC4a LINE L1 5602 6210 -1598 2374 158 10 18 chrX 15976859 15977252 -146622678 + MLT1B LTR MaLR 1 390 0 844 238 36 60 chrX 15977325 15977606 -146622324 + MLT1H LTR MaLR 29 302 -247 1923 167 0 0 chrX 15979695 15979983 -146619947 - AluJb SINE Alu -23 289 2 24 0 0 0 chrX 15979983 15980007 -146619923 + AT_rich Low_complexity Low_complexity 1 24 0 640 176 110 0 chrX 15980007 15980143 -146619787 + MLT-int LTR MaLR 479 629 -1106 1957 187 42 23 chrX 15980154 15980582 -146619348 - L1MC3 LINE L1 -25 7760 7325 693 154 77 0 chrX 15980591 15980708 -146619222 - L1MDb LINE L1 -6275 134 9 3913 90 4 8 chrX 15980978 15981487 -146618443 + L1PA11 LINE L1 5660 6166 -8 1431 276 30 45 chrX 15981910 15982381 -146617549 + LTR16B LTR ERVL 1 464 0 1373 253 31 3 chrX 15982526 15982878 -146617052 - L1ME3A LINE L1 0 6170 5809 490 274 22 30 chrX 15983792 15983927 -146616003 - MIR SINE MIR -128 134 1 899 277 41 4 chrX 15984126 15984368 -146615562 + MIR SINE MIR 2 252 -10 382 328 11 40 chrX 15984433 15984607 -146615323 - MER5A DNA MER1_type -2 187 19 463 61 0 202 chrX 15985262 15985361 -146614569 - MADE1 DNA Mariner 0 80 2 200 183 0 17 chrX 15985828 15985888 -146614042 + GA-rich Low_complexity Low_complexity 2 60 0 2381 216 110 30 chrX 15986539 15987004 -146612926 - L1MC4a LINE L1 0 7808 7305 26416 32 0 0 chrX 15987004 15990766 -146609164 - L1PA5 LINE L1 -1 6153 2394 2381 216 110 30 chrX 15990766 15990951 -146608979 - L1MC4a LINE L1 -503 7305 7136 247 294 33 22 chrX 15992602 15992694 -146607236 - MIR SINE MIR -74 188 96 777 271 10 10 chrX 15994317 15994516 -146605414 + MIR SINE MIR 2 200 -62 459 0 0 0 chrX 15996087 15996138 -146603792 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2609 71 0 0 chrX 15996486 15996797 -146603133 + AluY SINE Alu 1 311 0 265 216 155 21 chrX 15996852 15996949 -146602981 + L2 LINE L2 3204 3313 0 509 143 0 0 chrX 15997847 15997931 -146601999 + L1MA9 LINE L1 6188 6271 -41 27 0 0 0 chrX 15998274 15998301 -146601629 + AT_rich Low_complexity Low_complexity 1 27 0 406 268 177 6 chrX 15999896 16000060 -146599870 + MIR SINE MIR 70 261 -1 281 252 43 79 chrX 16000474 16000613 -146599317 - MIR SINE MIR -56 206 73 982 234 148 36 chrX 16000652 16001036 -146598894 - MLT1J2 LTR MaLR -23 427 1 288 295 67 9 chrX 16001468 16001573 -146598357 + L2 LINE L2 3161 3271 -1 1821 208 42 9 chrX 16002251 16002680 -146597250 + L1MC4 LINE L1 7462 7904 -138 320 214 41 41 chrX 16002792 16002890 -146597040 + L1MC4 LINE L1 7942 8039 -3 1311 112 0 11 chrX 16002909 16003097 -146596833 + THE1B LTR MaLR 17 202 -162 4272 126 16 125 chrX 16003097 16004644 -146595286 + pTR5 LTR ERV1 743 2606 0 1193 105 6 6 chrX 16004644 16004806 -146595124 + THE1B LTR MaLR 203 364 0 187 377 93 19 chrX 16005898 16006113 -146593817 + L2 LINE L2 2825 3055 -217 21 0 0 0 chrX 16006534 16006555 -146593375 + AT_rich Low_complexity Low_complexity 1 21 0 1452 150 143 8 chrX 16006775 16007041 -146592889 + AluJb SINE Alu 1 302 0 3986 194 34 16 chrX 16007990 16008827 -146591103 + L1MB7 LINE L1 5333 6184 0 493 54 14 14 chrX 16009275 16009349 -146590581 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 554 208 190 32 chrX 16009368 16009589 -146590341 - MIR SINE MIR -5 257 2 889 193 50 6 chrX 16009768 16009949 -146589981 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chrX 16010241 16010265 -146589665 + AT_rich Low_complexity Low_complexity 1 24 0 374 268 107 15 chrX 16010531 16010667 -146589263 - MLT1J LTR MaLR -33 466 269 365 234 0 1 chrX 16010690 16010765 -146589165 - MLT1J LTR MaLR -253 196 83 2083 163 79 3 chrX 16010767 16011135 -146588795 + MSTD LTR MaLR 1 396 0 367 269 0 0 chrX 16011140 16011218 -146588712 - MLT1J LTR MaLR -428 83 6 5627 134 16 1 chrX 16011622 16012677 -146587253 - L1M2 LINE L1 -743 5403 4477 2182 215 26 49 chrX 16012676 16013206 -146586724 - L1M2b LINE L1 -6691 518 1 * 801 204 17 28 chrX 16013570 16013746 -146586184 - MER5B DNA MER1_type -4 174 1 390 175 50 0 chrX 16013936 16014016 -146585914 - MER5A DNA MER1_type -80 109 26 411 274 170 15 chrX 16015089 16015224 -146584706 - MER5A DNA MER1_type -3 186 31 2177 61 2 1 chrX 16015299 16015807 -146584123 - MER41A LTR ERV1 0 554 1 1502 182 61 73 chrX 16016181 16016576 -146583354 - MLT1B LTR MaLR 0 390 1 817 212 16 33 chrX 16016884 16017068 -146582862 - AluJo SINE Alu -17 295 115 295 278 8 87 chrX 16019162 16019288 -146580642 - L2 LINE L2 -21 3251 3136 1279 104 6 0 chrX 16019328 16019510 -146580420 + MER41B LTR ERV1 1 183 -452 2256 77 24 0 chrX 16019510 16019848 -146580082 + L1PA14 LINE L1 5654 6157 -4 28 50 0 17 chrX 16019848 16019875 -146580055 + AT_rich Low_complexity Low_complexity 1 27 -32 2246 93 0 0 chrX 16019875 16020154 -146579776 - AluSx SINE Alu -20 292 14 28 50 0 17 chrX 16020154 16020186 -146579744 + AT_rich Low_complexity Low_complexity 27 59 0 1069 41 0 14 chrX 16020204 16020349 -146579581 + (GAA)n Simple_repeat Simple_repeat 1 143 0 2792 157 0 2 chrX 16020355 16020807 -146579123 + MER41B LTR ERV1 185 635 0 490 130 130 0 chrX 16020811 16020911 -146579019 + MER5A DNA MER1_type 77 189 0 886 269 99 33 chrX 16021039 16021403 -146578527 - MLT1J1 LTR MaLR -13 433 46 284 316 43 8 chrX 16021507 16021624 -146578306 - MIR SINE MIR -122 140 20 2394 158 92 13 chrX 16021690 16022138 -146577792 + MLT1D LTR MaLR 21 503 -2 1387 164 0 0 chrX 16022417 16022637 -146577293 - AluJb SINE Alu -7 305 86 3192 237 48 21 chrX 16022637 16023630 -146576300 + L1MD2 LINE L1 3941 4960 -1186 268 32 0 0 chrX 16023635 16023666 -146576264 - U2 snRNA snRNA -152 36 6 43890 32 21 1 chrX 16023769 16024401 -146575529 + L1PA2 LINE L1 3 621 -5534 5258 15 0 3 chrX 16024401 16024995 -146574935 + L1PA2 LINE L1 5564 6155 0 43890 32 21 1 chrX 16024995 16030385 -146569545 + L1PA2 LINE L1 621 6146 -9 252 0 0 0 chrX 16030385 16030413 -146569517 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 207 0 0 0 chrX 16030412 16030435 -146569495 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 * 4443 206 75 16 chrX 16030413 16030650 -146569280 + L1MD2 LINE L1 5049 5271 -1088 1598 43 0 0 chrX 16030650 16030866 -146569064 + L1PA3 LINE L1 5952 6167 0 4443 206 75 16 chrX 16030866 16031666 -146568264 + L1MD2 LINE L1 5271 6168 -191 189 0 0 0 chrX 16031666 16031687 -146568243 + (CA)n Simple_repeat Simple_repeat 2 22 0 4443 206 75 16 chrX 16031687 16031891 -146568039 + L1MD2 LINE L1 6168 6359 0 260 211 101 30 chrX 16032005 16032131 -146567799 - MIR SINE MIR -62 146 19 467 189 56 11 chrX 16032451 16032541 -146567389 + Charlie2 DNA MER1_type 249 342 -2520 1810 167 89 23 chrX 16032636 16033073 -146566857 + Charlie2 DNA MER1_type 2393 2858 -4 198 355 9 28 chrX 16033616 16033723 -146566207 + L3 LINE CR1 433 537 -1040 613 300 19 24 chrX 16034298 16034508 -146565422 - MLT1H LTR MaLR -317 232 24 180 0 0 0 chrX 16034911 16034931 -146564999 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 244 152 0 22 chrX 16036911 16036957 -146562973 - L1ME4a LINE L1 0 6121 6077 21 71 0 0 chrX 16037249 16037291 -146562639 + AT_rich Low_complexity Low_complexity 1 42 0 714 218 29 11 chrX 16037341 16037515 -146562415 - L1ME LINE L1 -426 5695 5519 271 289 50 16 chrX 16037861 16037982 -146561948 + L2 LINE L2 3189 3313 0 1017 263 28 9 chrX 16038094 16038480 -146561450 + LTR16C LTR ERVL 61 483 -8 183 80 0 0 chrX 16038650 16038675 -146561255 + (TG)n Simple_repeat Simple_repeat 2 26 0 2385 95 3 0 chrX 16038734 16039038 -146560892 + AluSx SINE Alu 1 305 -7 950 261 203 15 chrX 16039337 16039805 -146560125 - LTR67 LTR ERVL 0 557 2 1256 181 45 57 chrX 16040027 16040358 -146559572 - MER33 DNA MER1_type 0 324 1 809 146 28 0 chrX 16040645 16040789 -146559141 + MER96B DNA MER1_type? 29 176 -241 313 212 47 12 chrX 16041022 16041107 -146558823 + L1ME4a LINE L1 4571 4658 -1488 198 220 0 0 chrX 16041722 16041781 -146558149 + (CA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chrX 16043061 16043089 -146556841 + AT_rich Low_complexity Low_complexity 1 28 0 444 254 41 25 chrX 16044073 16044257 -146555673 + MLT1I LTR MaLR 263 409 0 3845 177 29 41 chrX 16045357 16045917 -146554013 + L1MCb LINE L1 566 1131 -5433 2217 118 3 0 chrX 16045917 16046222 -146553708 + AluSx SINE Alu 1 306 -6 2131 97 49 0 chrX 16046228 16046516 -146553414 + AluSp SINE Alu 1 302 -11 3845 177 29 41 chrX 16046516 16047237 -146552693 + L1MCb LINE L1 1136 1941 -4623 693 276 115 55 chrX 16047587 16047884 -146552046 + L1ME4a LINE L1 5317 5595 -526 1816 153 27 3 chrX 16047884 16048185 -146551745 + AluJo SINE Alu 5 312 0 693 276 115 55 chrX 16048185 16048470 -146551460 + L1ME4a LINE L1 5595 5934 -187 368 218 65 24 chrX 16048490 16048614 -146551316 + L1ME4a LINE L1 5992 6120 -1 838 145 0 8 chrX 16048864 16048988 -146550942 - FLAM_A SINE Alu -9 124 2 2062 188 90 22 chrX 16049215 16049714 -146550216 - MLT1F LTR MaLR 0 555 10 5255 138 59 3 chrX 16049982 16051347 -146548583 + L1MA7 LINE L1 4848 6291 0 1784 183 0 10 chrX 16051351 16051663 -146548267 + AluJo SINE Alu 1 309 -3 1549 164 27 38 chrX 16052308 16052600 -146547330 + AluJb SINE Alu 1 289 -23 677 204 11 175 chrX 16052984 16053258 -146546672 - MIR SINE MIR -32 230 2 1021 233 35 22 chrX 16054126 16054354 -146545576 + MIR SINE MIR 10 240 -22 621 265 209 13 chrX 16054601 16055032 -146544898 - LTR50 LTR ERVL -1 794 193 245 325 44 75 chrX 16055033 16055285 -146544645 + L2 LINE L2 2664 2907 -407 1256 264 18 28 chrX 16055570 16055967 -146543963 + LTR16C LTR ERVL 98 490 -1 250 388 54 14 chrX 16055993 16056140 -146543790 + L2 LINE L2 3115 3267 -5 2002 131 0 32 chrX 16056858 16057172 -146542758 + AluJb SINE Alu 1 304 -8 418 244 68 91 chrX 16057294 16057470 -146542460 - MIR SINE MIR -5 257 86 709 285 18 36 chrX 16057609 16057830 -146542100 + MIR SINE MIR 12 228 -34 561 257 0 46 chrX 16057844 16057996 -146541934 - MIR SINE MIR -4 258 114 5906 213 47 27 chrX 16058000 16058874 -146541056 + L1MEc LINE L1 1333 2188 -4027 591 169 66 0 chrX 16058874 16059010 -146540920 + L1MA8 LINE L1 6146 6290 -1 5906 213 47 27 chrX 16059010 16060767 -146539163 + L1MEc LINE L1 2188 3920 -2295 2053 176 15 27 chrX 16060767 16061167 -146538763 - MLT2B2 LTR ERVL -122 393 12 734 42 0 0 chrX 16061167 16061262 -146538668 + L1PA7 LINE L1 6059 6153 -1 2053 176 15 27 chrX 16061262 16061274 -146538656 - MLT2B2 LTR ERVL -503 12 1 4616 133 13 3 chrX 16061276 16062058 -146537872 + L1MC1 LINE L1 5254 6043 -290 4423 106 76 1 chrX 16062059 16062760 -146537170 + Tigger1 DNA MER2_type 1 753 -1665 1691 127 41 14 chrX 16062739 16063031 -146536899 + Tigger1 DNA MER2_type 2119 2418 0 * 1610 153 21 11 chrX 16063031 16063313 -146536617 + L1MC1 LINE L1 6043 6327 -6 195 257 229 9 chrX 16063404 16063509 -146536421 - MIR SINE MIR -133 129 2 246 282 59 42 chrX 16063525 16063668 -146536262 - MIR3 SINE MIR -64 144 14 189 0 0 0 chrX 16064032 16064053 -146535877 + (A)n Simple_repeat Simple_repeat 1 21 0 411 276 0 104 chrX 16065471 16065591 -146534339 - MIR SINE MIR -41 221 127 1279 258 82 26 chrX 16065591 16066017 -146533913 + MLT1J2 LTR MaLR 1 450 0 411 276 0 104 chrX 16066017 16066088 -146533842 - MIR SINE MIR -135 127 50 266 312 44 34 chrX 16067239 16067444 -146532486 - L1ME LINE L1 -403 5718 5512 296 197 0 61 chrX 16067540 16067606 -146532324 + L2 LINE L2 3251 3312 -1 978 266 101 31 chrX 16068703 16069127 -146530803 + LTR16A1 LTR ERVL 1 454 -3 1862 254 97 45 chrX 16069171 16070148 -146529782 - L1ME LINE L1 -1215 4931 3890 2339 99 0 0 chrX 16070148 16070440 -146529490 - AluSx SINE Alu -18 294 3 1862 254 97 45 chrX 16070440 16070556 -146529374 - L1ME LINE L1 -2256 3890 3781 323 247 11 11 chrX 16070559 16070652 -146529278 - L1ME LINE L1 -458 5704 5612 416 372 55 7 chrX 16070654 16070928 -146529002 - L2 LINE L2 -928 2386 2100 277 109 27 45 chrX 16071084 16071194 -146528736 + (TTTG)n Simple_repeat Simple_repeat 3 110 0 2098 111 71 31 chrX 16071751 16072101 -146527829 + THE1B LTR MaLR 1 364 0 472 316 94 23 chrX 16072418 16072684 -146527246 + L1M4 LINE L1 2193 2477 -3669 1854 161 0 14 chrX 16072684 16072999 -146526931 + AluJb SINE Alu 3 313 0 201 39 0 0 chrX 16073098 16073124 -146526806 + (TA)n Simple_repeat Simple_repeat 1 26 0 302 282 0 35 chrX 16073127 16073269 -146526661 + L1M4 LINE L1 2606 2742 -3404 307 225 0 28 chrX 16073671 16073742 -146526188 - MIR SINE MIR -55 207 139 1781 124 4 40 chrX 16074006 16074279 -146525651 + AluSx SINE Alu 37 299 -13 330 245 69 0 chrX 16074279 16074381 -146525549 + LTR16A LTR ERVL 237 345 -105 338 61 20 0 chrX 16075059 16075108 -146524822 + (TC)n Simple_repeat Simple_repeat 2 51 0 357 43 0 0 chrX 16075108 16075155 -146524775 + (CA)n Simple_repeat Simple_repeat 1 47 0 2001 154 0 7 chrX 16075268 16075561 -146524369 + AluJb SINE Alu 1 291 -21 956 170 49 40 chrX 16075562 16075828 -146524102 + MLT1A1 LTR MaLR 48 365 0 2032 128 25 71 chrX 16076076 16076468 -146523462 + THE1C LTR MaLR 2 375 0 395 197 40 0 chrX 16076809 16076885 -146523045 - Tigger5 DNA MER2_type 0 2323 2245 331 200 29 0 chrX 16076941 16077011 -146522919 - Tigger5 DNA MER2_type -2251 72 1 2077 251 68 22 chrX 16077015 16077490 -146522440 - L1ME3 LINE L1 -84 6078 5538 2414 110 78 5 chrX 16077490 16077889 -146522041 + MSTA LTR MaLR 1 428 0 2077 251 68 22 chrX 16077889 16078247 -146521683 - L1ME3 LINE L1 -624 5538 5198 1479 174 130 17 chrX 16078356 16078717 -146521213 + LTR37A LTR ERV1 2 403 -23 320 248 28 37 chrX 16079818 16079927 -146520003 - MLT2E LTR ERVL -484 144 37 188 200 0 0 chrX 16080011 16080046 -146519884 + L2 LINE L2 3217 3251 -21 232 352 14 0 chrX 16080309 16080380 -146519550 + MIR SINE MIR 44 115 -93 2003 184 40 7 chrX 16080419 16080865 -146519065 + L1MD3 LINE L1 7527 7987 -8 242 125 25 0 chrX 16080904 16080944 -146518986 + MER45 DNA AcHobo 1541 1581 0 1926 158 0 3 chrX 16081106 16081403 -146518527 + AluJo SINE Alu 1 296 -16 34 24 0 0 chrX 16081405 16081446 -146518484 + AT_rich Low_complexity Low_complexity 1 41 0 338 145 0 16 chrX 16082651 16082713 -146517217 + FLAM_A SINE Alu 63 123 -10 592 239 0 75 chrX 16082807 16083033 -146516897 - MER3 DNA MER1_type 0 209 1 435 136 0 0 chrX 16083246 16083327 -146516603 - L1MA7 LINE L1 0 6291 6211 2198 113 0 7 chrX 16083498 16083799 -146516131 - AluSx SINE Alu -11 301 3 495 343 22 27 chrX 16085394 16085766 -146514164 + L3 LINE CR1 345 789 -788 246 239 0 15 chrX 16085876 16085943 -146513987 - MER103 DNA DNA -44 122 57 1605 148 0 16 chrX 16086125 16086381 -146513549 + AluJb SINE Alu 45 296 -16 2058 155 10 3 chrX 16086475 16086785 -146513145 + AluJb SINE Alu 1 312 0 27 0 0 0 chrX 16086884 16086911 -146513019 + AT_rich Low_complexity Low_complexity 1 27 0 211 296 0 0 chrX 16086976 16087030 -146512900 + L3 LINE CR1 878 931 -646 1956 129 13 19 chrX 16087031 16087342 -146512588 - AluJb SINE Alu -3 309 1 604 331 108 10 chrX 16087755 16088060 -146511870 + L3 LINE CR1 1240 1574 -3 324 241 241 25 chrX 16088301 16088459 -146511471 + L1ME3A LINE L1 5755 5946 -224 788 179 0 93 chrX 16088460 16088658 -146511272 + FRAM SINE Alu 1 47 0 509 231 103 62 chrX 16089564 16089806 -146510124 - MER112 DNA MER1_type -1 259 8 1747 194 0 7 chrX 16090821 16091120 -146508810 - AluJb SINE Alu -15 297 1 38 61 0 0 chrX 16091561 16091627 -146508303 + AT_rich Low_complexity Low_complexity 1 66 0 2296 90 3 7 chrX 16091892 16092182 -146507748 + AluSx SINE Alu 6 294 -18 189 156 44 22 chrX 16093138 16093183 -146506747 - L2 LINE L2 -4 3268 3223 314 136 12 49 chrX 16093383 16093464 -146506466 - L1MC5 LINE L1 -51 7910 7833 529 234 10 88 chrX 16094100 16094292 -146505638 + MER5B DNA MER1_type 2 178 0 187 296 0 0 chrX 16094301 16094345 -146505585 - MER5A DNA MER1_type -1 188 145 237 254 30 0 chrX 16094391 16094458 -146505472 - MER5A DNA MER1_type -112 77 9 189 0 0 0 chrX 16095845 16095866 -146504064 + (A)n Simple_repeat Simple_repeat 1 21 0 1892 160 0 7 chrX 16095873 16096167 -146503763 + AluJo SINE Alu 1 292 -20 512 327 107 30 chrX 16096270 16096570 -146503360 + L2 LINE L2 2895 3217 -55 192 77 0 0 chrX 16096729 16096755 -146503175 + (T)n Simple_repeat Simple_repeat 1 26 0 512 241 78 78 chrX 16097703 16097948 -146501982 - MIR SINE MIR -3 259 15 283 151 226 19 chrX 16097966 16098072 -146501858 - L1ME4a LINE L1 -141 5980 5853 775 286 68 0 chrX 16098133 16098367 -146501563 - MIR SINE MIR -11 251 2 377 257 115 0 chrX 16098516 16098629 -146501301 - L1ME4a LINE L1 -484 5637 5512 1754 142 64 17 chrX 16098645 16098940 -146500990 - AluJo SINE Alu -3 309 1 375 322 63 0 chrX 16099015 16099158 -146500772 + MER58A DNA MER1_type 3 154 0 258 175 0 0 chrX 16099161 16099201 -146500729 + MER58A DNA MER1_type 185 224 0 2106 146 0 0 chrX 16099371 16099665 -146500265 + AluSx SINE Alu 1 294 -18 461 252 8 8 chrX 16099739 16099858 -146500072 + MIR SINE MIR 140 258 -4 1063 171 40 44 chrX 16100123 16100250 -146499680 + L1MDa LINE L1 1853 1980 -4560 1778 148 41 0 chrX 16100250 16100521 -146499409 - AluSq SINE Alu -1 312 31 1063 171 40 44 chrX 16100521 16100645 -146499285 + L1MDa LINE L1 1980 2103 -4437 23 0 0 0 chrX 16100694 16100717 -146499213 + AT_rich Low_complexity Low_complexity 1 23 0 1232 164 0 0 chrX 16100776 16100971 -146498959 + L1MC/D LINE L1 5628 5822 -537 1570 209 119 5 chrX 16101008 16101453 -146498477 + L1MDa LINE L1 2117 2612 -3928 2512 211 24 44 chrX 16101472 16101577 -146498353 + L1MDa LINE L1 2589 2695 -3845 1753 172 197 11 chrX 16101577 16101938 -146497992 + MSTA LTR MaLR 1 428 0 2512 211 24 44 chrX 16101938 16102234 -146497696 + L1MDa LINE L1 2695 2995 -3545 2254 119 0 6 chrX 16102234 16102546 -146497384 + AluSx SINE Alu 1 310 -2 2512 211 24 44 chrX 16102546 16102891 -146497039 + L1MDa LINE L1 2995 3321 -3219 602 124 86 9 chrX 16102906 16103011 -146496919 + L1M1 LINE L1 21 133 -7432 * 17255 131 28 39 chrX 16103008 16103678 -146496252 + L1M1 LINE L1 1099 1775 -5790 2361 90 0 0 chrX 16103678 16103968 -146495962 + AluSx SINE Alu 3 292 -20 17255 131 28 39 chrX 16103968 16104723 -146495207 + L1M1 LINE L1 1775 2537 -5028 1933 143 0 7 chrX 16104723 16105054 -146494876 + AluSx SINE Alu 1 329 0 17255 131 28 39 chrX 16105054 16105652 -146494278 + L1M1 LINE L1 2537 3140 -4425 2198 113 0 0 chrX 16105652 16105954 -146493976 + AluSq SINE Alu 1 302 -11 17255 131 28 39 chrX 16105954 16106155 -146493775 + L1M1 LINE L1 3140 3342 -4223 1935 148 0 20 chrX 16106155 16106459 -146493471 + AluJb SINE Alu 1 298 -14 17255 131 28 39 chrX 16106459 16107834 -146492096 + L1M1 LINE L1 3342 4731 -2834 400 21 0 0 chrX 16107834 16107869 -146492061 + L1PA6 LINE L1 6107 6154 0 17255 131 28 39 chrX 16107869 16108395 -146491535 + L1M1 LINE L1 4731 5261 -2304 2287 100 0 3 chrX 16108395 16108694 -146491236 + AluSg SINE Alu 1 298 -12 17255 131 28 39 chrX 16108694 16108717 -146491213 + L1M1 LINE L1 5261 5283 -2282 1565 172 22 11 chrX 16108717 16108985 -146490945 + AluJo SINE Alu 16 286 -26 17255 131 28 39 chrX 16108985 16109112 -146490818 + L1M1 LINE L1 5283 5324 -2241 4047 187 60 42 chrX 16109112 16109296 -146490634 + L1MD2 LINE L1 5271 5450 -909 1877 78 0 16 chrX 16109296 16109540 -146490390 + AluSc SINE Alu 54 293 -16 4047 187 60 42 chrX 16109540 16110217 -146489713 + L1MD2 LINE L1 5450 6113 -246 243 0 0 0 chrX 16110217 16110244 -146489686 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 273 29 0 0 chrX 16110243 16110277 -146489653 + (CA)n Simple_repeat Simple_repeat 1 34 0 4047 187 60 42 chrX 16110244 16110428 -146489502 + L1MD2 LINE L1 6113 6302 -57 1016 213 8 4 chrX 16110617 16110861 -146489069 + L1MDa LINE L1 1847 2091 -4449 * 1890 164 6 15 chrX 16110858 16111187 -146488743 + L1MD2 LINE L1 5506 5831 -528 1177 206 30 33 chrX 16111175 16111476 -146488454 + L1MD2 LINE L1 6059 6358 -1 * 882 222 17 4 chrX 16111697 16111936 -146487994 + L1MD2 LINE L1 1848 2089 -4451 1961 195 5 5 chrX 16111937 16112306 -146487624 + L1MD2 LINE L1 5902 6270 -483 942 121 0 0 chrX 16112334 16112466 -146487464 + AluSq/x SINE Alu 1 132 -181 227 53 0 26 chrX 16112468 16112506 -146487424 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1975 114 0 35 chrX 16112515 16112840 -146487090 + AluSx SINE Alu 5 319 0 1139 254 38 0 chrX 16112840 16113155 -146486775 + L1MD2 LINE L1 6427 6753 0 1634 188 23 46 chrX 16113366 16113963 -146485967 + L1MD2 LINE L1 1842 6227 -526 * 2413 206 69 53 chrX 16113961 16114449 -146485481 + L1MD2 LINE L1 5654 6158 -201 315 0 0 0 chrX 16114449 16114484 -146485446 + (CA)n Simple_repeat Simple_repeat 2 36 0 2413 206 69 53 chrX 16114484 16114690 -146485240 + L1MD2 LINE L1 6158 6359 0 466 251 36 41 chrX 16114906 16115075 -146484855 + L1MDa LINE L1 1841 2010 -4530 1558 167 22 7 chrX 16115075 16115345 -146484585 + AluJo SINE Alu 1 274 -38 466 251 36 41 chrX 16115345 16115370 -146484560 + L1MDa LINE L1 2010 2034 -4506 276 30 0 0 chrX 16115374 16115407 -146484523 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 270 156 52 13 chrX 16115407 16115484 -146484446 + L1MDa LINE L1 1998 2077 -4463 2232 106 10 10 chrX 16115494 16115806 -146484124 + AluSx SINE Alu 1 312 0 3265 188 71 33 chrX 16115825 16116629 -146483301 + L1MD2 LINE L1 5508 6345 -14 2282 104 3 0 chrX 16116629 16116928 -146483002 + AluSx SINE Alu 1 300 -12 3265 188 71 33 chrX 16116928 16116943 -146482987 + L1MD2 LINE L1 6345 6358 -1 1332 57 0 0 chrX 16117228 16117385 -146482545 + THE1A LTR MaLR 1 157 -198 8071 29 2 1 chrX 16117404 16118692 -146481238 + L1PA3 LINE L1 4867 6155 0 623 284 27 61 chrX 16118694 16118955 -146480975 + L1MD2 LINE L1 6288 6539 -214 727 179 62 0 chrX 16118969 16119114 -146480816 + L1MD1 LINE L1 6084 6237 -5 479 253 109 23 chrX 16119150 16119371 -146480559 + L1MDa LINE L1 1849 2088 -4452 4208 174 21 41 chrX 16119371 16119697 -146480233 + L1MD2 LINE L1 5506 5837 -522 2396 113 0 0 chrX 16119697 16120007 -146479923 + AluSx SINE Alu 1 310 -2 4208 174 21 41 chrX 16120007 16120550 -146479380 + L1MD2 LINE L1 5837 6357 -2 2509 82 0 6 chrX 16120588 16120903 -146479027 + AluSp SINE Alu 1 313 0 2185 102 3 3 chrX 16120974 16121268 -146478662 - AluSq SINE Alu -18 295 2 933 189 34 13 chrX 16121431 16121669 -146478261 + L1MD2 LINE L1 1847 2089 -4451 2920 194 30 37 chrX 16121670 16121772 -146478158 + L1MD2 LINE L1 5902 6003 -750 439 110 0 90 chrX 16121772 16121830 -146478100 + L1MA10 LINE L1 6244 6296 -38 1502 179 85 48 chrX 16121830 16122182 -146477748 + MLT1A1 LTR MaLR 1 365 0 439 110 0 90 chrX 16122182 16122218 -146477712 + L1MA10 LINE L1 6296 6334 0 2920 194 30 37 chrX 16122218 16122771 -146477159 + L1MD2 LINE L1 6003 6553 -200 713 157 58 0 chrX 16122772 16122893 -146477037 + L1MD1 LINE L1 6115 6242 0 300 285 19 82 chrX 16124665 16124759 -146475171 - L2 LINE L2 0 3272 3190 1698 149 3 122 chrX 16124759 16125102 -146474828 + AluSq SINE Alu 2 303 0 300 285 19 82 chrX 16125102 16125165 -146474765 - L2 LINE L2 -82 3190 3125 852 200 61 11 chrX 16125200 16125380 -146474550 + MER5A DNA MER1_type 1 189 0 609 254 52 17 chrX 16125383 16125556 -146474374 + MIR SINE MIR 5 183 -79 386 266 56 79 chrX 16125668 16125972 -146473958 - L2 LINE L2 -164 3108 2812 2434 80 0 0 chrX 16127213 16127512 -146472418 + AluSq SINE Alu 1 299 -14 2078 117 3 0 chrX 16127682 16127965 -146471965 + AluY SINE Alu 1 284 -27 24 0 0 0 chrX 16128040 16128064 -146471866 + AT_rich Low_complexity Low_complexity 1 24 0 4908 209 23 42 chrX 16128284 16129511 -146470419 + L1MC4a LINE L1 6605 7808 0 22 0 0 0 chrX 16130328 16130350 -146469580 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chrX 16130439 16130489 -146469441 + AT_rich Low_complexity Low_complexity 1 50 0 183 244 183 12 chrX 16130563 16130645 -146469285 - MIR SINE MIR -99 163 68 2147 190 78 60 chrX 16130759 16130977 -146468953 + L1ME2 LINE L1 5539 5752 -412 2304 104 0 0 chrX 16130977 16131274 -146468656 + AluSx SINE Alu 1 297 -15 2147 190 78 60 chrX 16131274 16131569 -146468361 + L1ME2 LINE L1 5752 6067 -97 2417 82 0 13 chrX 16131569 16131875 -146468055 - AluSx SINE Alu -10 302 1 2147 190 78 60 chrX 16131875 16131975 -146467955 + L1ME2 LINE L1 6067 6164 0 260 281 178 15 chrX 16132517 16132652 -146467278 + MIR3 SINE MIR 29 185 -23 186 229 0 0 chrX 16132623 16132658 -146467272 + L3 LINE CR1 1530 1564 -13 * 1906 161 0 22 chrX 16133106 16133422 -146466508 + AluJo SINE Alu 1 309 -3 1245 228 87 21 chrX 16133511 16133615 -146466315 + L1ME3A LINE L1 5763 5859 -311 739 187 8 0 chrX 16133615 16133738 -146466192 + FLAM_A SINE Alu 1 124 -9 1245 228 87 21 chrX 16133738 16134011 -146465919 + L1ME3A LINE L1 5859 6165 -5 2191 101 44 0 chrX 16134018 16134316 -146465614 + AluSx SINE Alu 1 311 -1 387 271 32 7 chrX 16134447 16134602 -146465328 - L1ME4a LINE L1 -260 5861 5703 1099 166 38 19 chrX 16134602 16134813 -146465117 - L1MB4 LINE L1 -18 6162 5948 1539 196 79 25 chrX 16134918 16135234 -146464696 + MER58B DNA MER1_type 1 333 -8 548 274 13 0 chrX 16135486 16135643 -146464287 - L1ME4a LINE L1 -1778 4368 4210 180 111 0 0 chrX 16136395 16136422 -146463508 + (TATG)n Simple_repeat Simple_repeat 3 29 0 315 333 17 17 chrX 16136987 16137107 -146462823 + MIR SINE MIR 32 151 -57 1893 143 16 0 chrX 16137275 16137399 -146462531 + AluJb SINE Alu 1 121 -191 252 0 0 0 chrX 16137399 16137427 -146462503 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1893 143 16 0 chrX 16137427 16137609 -146462321 + AluJb SINE Alu 121 312 0 2200 104 10 0 chrX 16138057 16138366 -146461564 + AluSx SINE Alu 1 312 0 1851 155 0 0 chrX 16139110 16139442 -146460488 + AluJb SINE Alu 11 342 0 221 206 0 15 chrX 16140503 16140571 -146459359 + (TA)n Simple_repeat Simple_repeat 1 67 0 1974 119 20 3 chrX 16141026 16141329 -146458601 - L1PA16 LINE L1 -143 6023 5716 900 169 11 42 chrX 16141824 16142013 -146457917 + LTR41 LTR ERVL 1 183 -590 549 208 10 105 chrX 16142116 16142314 -146457616 + LTR41 LTR ERVL 443 711 -84 2140 133 0 0 chrX 16142314 16142615 -146457315 - AluJb SINE Alu -11 301 1 549 208 10 105 chrX 16142615 16142693 -146457237 + LTR41 LTR ERVL 711 795 0 2288 87 0 0 chrX 16143192 16143481 -146456449 + AluSg1 SINE Alu 1 289 -20 405 0 0 0 chrX 16143483 16143528 -146456402 + (TA)n Simple_repeat Simple_repeat 2 46 0 4508 114 23 36 chrX 16143976 16144099 -146455831 - L1PB3 LINE L1 -1 6153 6030 2075 115 0 0 chrX 16144099 16144369 -146455561 - AluSx SINE Alu -34 278 9 4508 114 23 36 chrX 16144369 16144711 -146455219 - L1PB3 LINE L1 -124 6030 5685 1741 107 0 41 chrX 16144711 16144954 -146454976 + AluSq SINE Alu 51 283 -30 219 69 0 0 chrX 16144960 16144989 -146454941 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 4508 114 23 36 chrX 16144989 16145215 -146454715 - L1PB3 LINE L1 -474 5680 5463 216 273 0 13 chrX 16145890 16145967 -146453963 + MER5B DNA MER1_type 5 80 -98 2245 142 59 30 chrX 16146511 16147026 -146452904 - MLT2A2 LTR ERVL 0 554 3 196 303 87 51 chrX 16149835 16150089 -146449841 - L2 LINE L2 -203 3110 2848 2297 109 0 0 chrX 16150341 16150645 -146449285 + AluSx SINE Alu 1 304 -8 495 68 11 102 chrX 16150645 16150721 -146449209 + HUERS-P1 LTR ERV1 3042 3111 -3152 1760 110 0 8 chrX 16150721 16150957 -146448973 + AluSx SINE Alu 6 239 -73 495 68 11 102 chrX 16150957 16150968 -146448962 + HUERS-P1 LTR ERV1 3111 3121 -3142 * 1770 64 8 28 chrX 16150958 16151208 -146448722 + HUERS-P1 LTR ERV1 3392 3636 -2627 829 125 8 8 chrX 16151937 16152065 -146447865 - FLAM_A SINE Alu -5 128 1 652 315 117 21 chrX 16152537 16152912 -146447018 - L1ME4a LINE L1 -227 5894 5464 2157 121 0 3 chrX 16152912 16153218 -146446712 - L1PA16 LINE L1 -4 6162 5858 652 315 117 21 chrX 16153218 16153312 -146446618 - L1ME4a LINE L1 -657 5464 5380 508 250 66 7 chrX 16153312 16153464 -146446466 + MLT1F1 LTR MaLR 1 161 -381 898 195 32 36 chrX 16153781 16154002 -146445928 + MLT1F1 LTR MaLR 338 557 -10 298 296 21 99 chrX 16154222 16154506 -146445424 + L2 LINE L2 2967 3228 -44 323 227 0 34 chrX 16154785 16154873 -146445057 - HsTC2 DNA Tc2 -1812 86 2 258 247 0 26 chrX 16155347 16155424 -146444506 - L2 LINE L2 -80 3233 3159 1514 125 0 0 chrX 16155527 16155743 -146444187 + AluSg/x SINE Alu 95 310 0 503 178 101 71 chrX 16155775 16155832 -146444098 + MER104 DNA Tc2 5 59 -1839 2358 82 3 0 chrX 16155832 16156125 -146443805 - AluSx SINE Alu -18 294 1 503 178 101 71 chrX 16156125 16156236 -146443694 + MER104 DNA Tc2 59 178 -2 289 261 123 14 chrX 16156836 16156974 -146442956 - Charlie7 DNA MER1_type -2449 163 11 21 0 0 0 chrX 16158807 16158828 -146441102 + AT_rich Low_complexity Low_complexity 1 21 0 2001 93 93 0 chrX 16159201 16159480 -146440450 + AluSp SINE Alu 1 305 -8 193 29 59 0 chrX 16162523 16162557 -146437373 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1925 156 3 0 chrX 16162561 16162849 -146437081 - AluJb SINE Alu -23 289 1 26 0 0 0 chrX 16163945 16163971 -146435959 + AT_rich Low_complexity Low_complexity 1 26 0 423 294 135 12 chrX 16164444 16164607 -146435323 + MIR SINE MIR 8 190 -72 2273 110 3 7 chrX 16165209 16165517 -146434413 - AluSp SINE Alu -6 307 1 1855 96 0 16 chrX 16166484 16166733 -146433197 - AluSq SINE Alu -28 285 41 5027 190 54 32 chrX 16168566 16169699 -146430231 + L1M4 LINE L1 17 1174 -5368 1110 147 0 0 chrX 16169699 16169856 -146430074 - AluSg/x SINE Alu -22 288 132 2459 66 3 10 chrX 16169856 16170159 -146429771 - AluY SINE Alu -10 301 1 400 134 0 49 chrX 16170159 16170241 -146429689 + L1M4 LINE L1 1164 1241 -5301 2612 82 49 25 chrX 16170247 16170613 -146429317 - THE1C LTR MaLR 0 375 1 1181 174 10 0 chrX 16170613 16170814 -146429116 + AluSg/x SINE Alu 106 308 -2 4817 147 45 16 chrX 16170816 16171472 -146428458 + L1MB7 LINE L1 5189 5884 -300 2187 131 0 0 chrX 16171472 16171778 -146428152 + AluSx SINE Alu 5 310 -2 4817 147 45 16 chrX 16171778 16172080 -146427850 + L1MB7 LINE L1 5884 6176 -8 341 329 35 6 chrX 16172866 16173036 -146426894 + L1M4 LINE L1 1242 1416 -5218 2055 227 72 38 chrX 16173038 16173645 -146426285 + L1ME3A LINE L1 5537 6164 -6 2066 138 0 0 chrX 16174118 16174414 -146425516 + AluSx SINE Alu 1 296 -16 495 285 145 19 chrX 16174652 16174866 -146425064 - MIR SINE MIR -2 260 20 185 268 0 36 chrX 16174879 16174935 -146424995 - MIR SINE MIR -138 70 17 2157 116 0 7 chrX 16175645 16175946 -146423984 + AluSx SINE Alu 1 299 -13 2015 166 0 0 chrX 16177082 16177390 -146422540 + AluSx SINE Alu 1 308 -4 534 163 0 0 chrX 16177390 16177488 -146422442 + G-rich Low_complexity Low_complexity 4 101 0 29 70 0 0 chrX 16178205 16178262 -146421668 + AT_rich Low_complexity Low_complexity 1 57 0 2182 120 10 0 chrX 16178458 16178767 -146421163 + AluSx SINE Alu 1 312 0 727 124 80 0 chrX 16180653 16180766 -146419164 - FLAM_C SINE Alu -13 130 9 282 196 0 5 chrX 16180981 16181052 -146418878 + L1MA4A LINE L1 6238 6305 0 1021 232 101 108 chrX 16181659 16181814 -146418116 - L1ME LINE L1 -4023 2238 2083 2384 99 0 0 chrX 16181814 16182117 -146417813 - AluSx SINE Alu -9 303 1 1021 232 101 108 chrX 16182117 16182178 -146417752 - L1ME LINE L1 -4178 2083 2023 1861 172 0 13 chrX 16182178 16182492 -146417438 - AluJb SINE Alu -2 310 1 1021 232 101 108 chrX 16182492 16183037 -146416893 - L1ME LINE L1 -4238 2023 1481 294 75 19 19 chrX 16183181 16183234 -146416696 - L1MA9 LINE L1 -1 6311 6259 * 2743 255 58 42 chrX 16183224 16183908 -146416022 - L1ME LINE L1 -4605 1475 804 462 18 0 0 chrX 16183908 16183963 -146415967 + (TG)n Simple_repeat Simple_repeat 2 56 0 2743 255 58 42 chrX 16183963 16184671 -146415259 - L1ME LINE L1 -5276 804 63 237 104 104 134 chrX 16184721 16184788 -146415142 - L1ME1 LINE L1 -5 6161 6097 326 161 49 12 chrX 16185740 16185821 -146414109 - L1MA9 LINE L1 0 6312 6229 665 276 74 15 chrX 16186968 16187051 -146412879 - MER58C DNA MER1_type -2205 215 138 2410 62 0 44 chrX 16187051 16187372 -146412558 - AluY SINE Alu -4 307 1 665 276 74 15 chrX 16187372 16187491 -146412439 - MER58C DNA MER1_type -2282 138 1 2216 118 3 0 chrX 16187724 16188021 -146411909 + AluSq SINE Alu 1 298 -15 1481 19 0 0 chrX 16188096 16188257 -146411673 + L1PA3 LINE L1 5995 6155 0 2553 107 24 24 chrX 16188655 16189030 -146410900 + THE1C LTR MaLR 1 375 0 23 54 0 0 chrX 16189415 16189452 -146410478 + AT_rich Low_complexity Low_complexity 1 37 0 1267 105 0 0 chrX 16189505 16189667 -146410263 - AluSg/x SINE Alu -13 299 138 1844 98 4 0 chrX 16239667 16239903 -146360027 - AluSx SINE Alu -75 237 1 741 162 0 66 chrX 16239979 16240115 -146359815 - FRAM SINE Alu -13 163 37 195 256 0 0 chrX 16240118 16240157 -146359773 + L2 LINE L2 3225 3263 -50 219 167 0 0 chrX 16240248 16240290 -146359640 + (CATA)n Simple_repeat Simple_repeat 4 45 0 467 279 95 0 chrX 16240730 16240888 -146359042 - MIR SINE MIR -8 254 82 180 0 0 0 chrX 16240956 16240976 -146358954 + (CAA)n Simple_repeat Simple_repeat 2 21 0 406 130 0 200 chrX 16241183 16241298 -146358632 - Tigger7 DNA MER2_type -1 2486 2395 * 901 134 0 7 chrX 16241291 16241433 -146358497 - Tigger7 DNA MER2_type -208 525 385 224 322 154 50 chrX 16242398 16243112 -146356818 + L2 LINE L2 1694 2481 -833 2064 169 164 93 chrX 16243196 16243892 -146356038 + LTR1B LTR ERV1 1 745 -81 229 333 111 30 chrX 16244002 16244236 -146355694 + L2 LINE L2 2595 2847 -467 3007 121 72 31 chrX 16244274 16244819 -146355111 + MER4B LTR ERV1 1 567 -43 331 370 41 14 chrX 16245096 16245242 -146354688 + L2 LINE L2 3116 3265 -7 1278 177 24 47 chrX 16245434 16245593 -146354337 + L1MB5 LINE L1 5428 5580 -594 2078 117 17 0 chrX 16245593 16245892 -146354038 + AluSx SINE Alu 1 304 -8 1278 177 24 47 chrX 16245892 16245986 -146353944 + L1MB5 LINE L1 5580 5675 -499 247 22 0 87 chrX 16246060 16246106 -146353824 + (CATA)n Simple_repeat Simple_repeat 4 45 0 2840 157 17 13 chrX 16246108 16246586 -146353344 + L1MB5 LINE L1 5695 6174 0 2117 136 0 3 chrX 16246645 16246947 -146352983 - AluJb SINE Alu -11 301 1 385 280 51 57 chrX 16247013 16247170 -146352760 - MIR SINE MIR -87 175 20 991 294 23 55 chrX 16247405 16247461 -146352469 + L1PA16 LINE L1 789 845 -6729 1918 146 31 7 chrX 16247461 16247755 -146352175 + AluJb SINE Alu 1 301 -11 991 294 23 55 chrX 16247755 16248137 -146351793 + L1PA16 LINE L1 845 1213 -6361 13994 206 27 14 chrX 16248799 16251006 -146348924 + L1PA16 LINE L1 2259 4435 -3169 2231 113 0 0 chrX 16251006 16251307 -146348623 + AluSx SINE Alu 1 301 -11 13994 206 27 14 chrX 16251307 16251418 -146348512 + L1PA16 LINE L1 4435 4543 -3061 2373 90 3 0 chrX 16251418 16251719 -146348211 + AluSp SINE Alu 1 302 -11 13994 206 27 14 chrX 16251719 16251932 -146347998 + L1PA16 LINE L1 4543 4752 -2852 2006 160 0 0 chrX 16251932 16252225 -146347705 + AluJb SINE Alu 1 293 -19 13994 206 27 14 chrX 16252225 16254335 -146345595 + L1PA16 LINE L1 4752 6988 -616 2332 84 7 3 chrX 16254335 16254634 -146345296 + AluSp SINE Alu 1 300 -13 13994 206 27 14 chrX 16254634 16255251 -146344679 + L1PA16 LINE L1 6988 7595 -9 23 33 0 0 chrX 16255601 16255631 -146344299 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chrX 16260263 16260306 -146339624 + AT_rich Low_complexity Low_complexity 1 43 0 331 279 81 25 chrX 16261547 16261708 -146338222 + L1ME4a LINE L1 5255 5424 -2384 548 283 140 22 chrX 16261729 16262129 -146337801 + L1ME4a LINE L1 5462 5908 -213 396 287 54 73 chrX 16262242 16262559 -146337371 - L1MC4a LINE L1 -1749 6059 5749 485 329 46 18 chrX 16263276 16263668 -146336262 + L1MEc LINE L1 1410 1812 -4584 7737 182 34 115 chrX 16263743 16266132 -146333798 + L1M1 LINE L1 -413 1783 -4644 * 9719 132 29 57 chrX 16266130 16267284 -146332646 + L1M1 LINE L1 3571 4756 -1827 1749 172 44 0 chrX 16267284 16267388 -146332542 + AluJb SINE Alu 3 101 -211 209 57 29 0 chrX 16267388 16267423 -146332507 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1749 172 44 0 chrX 16267423 16267615 -146332315 + AluJb SINE Alu 101 312 0 9719 132 29 57 chrX 16267615 16268151 -146331779 + L1M1 LINE L1 4756 5306 -1277 1569 108 138 11 chrX 16268151 16268420 -146331510 + AluSg1 SINE Alu 1 303 -6 9719 132 29 57 chrX 16268420 16268808 -146331122 + L1M1 LINE L1 5306 5704 -879 2187 100 0 17 chrX 16268808 16269107 -146330823 + AluY SINE Alu 1 294 -17 9719 132 29 57 chrX 16269107 16269311 -146330619 + L1M1 LINE L1 5704 5792 -791 1703 181 3 23 chrX 16269311 16269615 -146330315 - AluJo SINE Alu -14 298 1 9719 132 29 57 chrX 16269615 16269693 -146330237 + L1M1 LINE L1 5792 5871 -712 2192 122 0 0 chrX 16269694 16269989 -146329941 + AluJb SINE Alu 1 295 -17 2275 124 0 0 chrX 16270085 16270391 -146329539 + AluSx SINE Alu 1 306 -6 1771 182 100 80 chrX 16270451 16270692 -146329238 + L1M2 LINE L1 1449 1684 -4742 2222 128 0 0 chrX 16270692 16271004 -146328926 + AluSx SINE Alu 1 312 0 1771 182 100 80 chrX 16271004 16271066 -146328864 + L1M2 LINE L1 1684 1743 -4683 1719 184 0 17 chrX 16271066 16271360 -146328570 + AluJb SINE Alu 1 289 -23 1771 182 100 80 chrX 16271360 16271652 -146328278 + L1M2 LINE L1 1743 2815 -3611 189 107 0 0 chrX 16271709 16271737 -146328193 + (T)n Simple_repeat Simple_repeat 1 28 0 205 342 112 25 chrX 16271828 16272024 -146327906 + L2 LINE L2 1937 2149 -1165 224 250 36 36 chrX 16272043 16272127 -146327803 + MER5A DNA MER1_type 77 160 -29 267 350 10 21 chrX 16272332 16272429 -146327501 + L2 LINE L2 2225 2320 -994 1083 262 118 38 chrX 16272441 16272914 -146327016 - MLT1J LTR MaLR 0 511 1 247 250 0 0 chrX 16273207 16273259 -146326671 + L2 LINE L2 3183 3234 -79 1232 121 0 0 chrX 16273611 16273785 -146326145 - AluSq SINE Alu -8 305 132 405 207 141 16 chrX 16275033 16275154 -146324776 - L2 LINE L2 -1 3312 3177 21 0 0 0 chrX 16275330 16275351 -146324579 + AT_rich Low_complexity Low_complexity 1 21 0 360 227 73 27 chrX 16275714 16275824 -146324106 - MER5B DNA MER1_type -62 116 2 215 200 25 0 chrX 16275883 16275923 -146324007 - MIR SINE MIR -193 69 29 855 140 0 21 chrX 16276402 16276545 -146323385 - FLAM_C SINE Alu -3 140 1 1789 138 0 34 chrX 16276584 16276875 -146323055 + AluJb SINE Alu 14 294 -18 2002 134 7 10 chrX 16277270 16277402 -146322528 + AluJb SINE Alu 1 132 -180 2214 102 3 0 chrX 16277402 16277686 -146322244 + AluSg SINE Alu 13 297 -13 2002 134 7 10 chrX 16277686 16277859 -146322071 + AluJb SINE Alu 132 305 -7 484 99 0 44 chrX 16277860 16277951 -146321979 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 1442 128 204 15 chrX 16277951 16278404 -146321526 + L1MA4 LINE L1 5192 5769 -534 * 5123 99 19 34 chrX 16278392 16278503 -146321427 + L1PA15 LINE L1 5334 5445 -720 2021 120 31 3 chrX 16278503 16278795 -146321135 + AluSx SINE Alu 1 300 -12 5123 99 19 34 chrX 16278795 16279528 -146320402 + L1PA15 LINE L1 5445 6165 0 835 69 69 0 chrX 16279530 16279661 -146320269 + L1MA4 LINE L1 5743 5882 -418 2512 69 7 0 chrX 16279837 16280142 -146319788 - AluSx SINE Alu -5 307 1 278 50 17 50 chrX 16280142 16280202 -146319728 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 721 150 0 33 chrX 16280206 16280326 -146319604 - FLAM_A SINE Alu -17 116 1 507 285 184 17 chrX 16280405 16280693 -146319237 + L2 LINE L2 2922 3257 -56 2873 230 114 36 chrX 16280788 16281357 -146318573 - L2 LINE L2 0 3313 2790 2152 129 0 3 chrX 16281357 16281668 -146318262 - AluSq SINE Alu -3 310 1 2873 230 114 36 chrX 16281668 16281843 -146318087 - L2 LINE L2 -523 2790 2630 1289 179 78 87 chrX 16281843 16282190 -146317740 + MER2 DNA MER2_type 1 344 0 2873 230 114 36 chrX 16282190 16282496 -146317434 - L2 LINE L2 -683 2630 2171 286 171 224 0 chrX 16282504 16282549 -146317381 - MER20 DNA MER1_type -1 218 184 420 71 0 0 chrX 16282549 16282605 -146317325 + (TG)n Simple_repeat Simple_repeat 2 57 0 286 171 224 0 chrX 16282605 16282635 -146317295 - MER20 DNA MER1_type -35 184 126 2745 68 11 0 chrX 16282773 16283124 -146316806 + THE1A LTR MaLR 1 355 0 202 27 0 54 chrX 16283420 16283457 -146316473 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 516 165 0 82 chrX 16283461 16283558 -146316372 - AluJb SINE Alu -34 278 190 200 202 32 128 chrX 16283731 16283825 -146316105 - MIR SINE MIR -4 258 174 * 538 329 96 31 chrX 16283783 16284169 -146315761 + L2 LINE L2 1961 2371 -943 221 318 142 67 chrX 16284205 16284383 -146315547 - L2 LINE L2 -1 3271 3065 2150 122 0 31 chrX 16284383 16284704 -146315226 + AluSx SINE Alu 1 311 -1 221 318 142 67 chrX 16284704 16284792 -146315138 - L2 LINE L2 -207 3065 2985 344 314 144 38 chrX 16284903 16285104 -146314826 - L2 LINE L2 -500 2814 2583 1264 197 122 55 chrX 16285104 16285521 -146314409 + MER65A LTR ERV1 1 445 0 344 314 144 38 chrX 16285521 16285555 -146314375 - L2 LINE L2 -731 2583 2554 341 250 48 111 chrX 16285658 16285683 -146314247 + L1ME3A LINE L1 5306 5331 -2477 2247 113 0 0 chrX 16285683 16285983 -146313947 + AluSx SINE Alu 1 300 -12 341 250 48 111 chrX 16285983 16286209 -146313721 + L1ME3A LINE L1 5331 5541 -2267 1567 141 47 34 chrX 16286223 16286582 -146313348 + Charlie3 DNA MER1_type 1 2712 0 633 165 124 0 chrX 16286660 16286781 -146313149 - AluJo SINE Alu -176 136 1 318 309 128 50 chrX 16286781 16287079 -146312851 + L1ME3A LINE L1 5602 5922 -199 2745 13 0 7 chrX 16287127 16287436 -146312494 + AluY SINE Alu 1 307 -4 23 33 0 0 chrX 16287576 16287606 -146312324 + AT_rich Low_complexity Low_complexity 1 30 0 2028 121 35 18 chrX 16288421 16288685 -146311245 + MLT1B LTR MaLR 1 259 -131 1889 125 57 0 chrX 16288685 16288966 -146310964 + AluSx SINE Alu 1 297 -15 1638 107 21 9 chrX 16288966 16289198 -146310732 + AluSg/x SINE Alu 73 308 -4 2028 121 35 18 chrX 16289198 16289270 -146310660 + MLT1B LTR MaLR 258 344 -46 1075 181 56 38 chrX 16289271 16289537 -146310393 + MLT1B LTR MaLR 1 271 -119 834 55 18 0 chrX 16289679 16289789 -146310141 + MLT1B LTR MaLR 279 390 0 384 268 32 114 chrX 16290508 16290728 -146309202 + L1MC4 LINE L1 7826 8027 -15 189 0 0 0 chrX 16291175 16291196 -146308734 + (A)n Simple_repeat Simple_repeat 1 21 0 604 242 65 26 chrX 16291432 16291663 -146308267 + L1ME3A LINE L1 5922 6161 -9 2408 62 3 0 chrX 16292188 16292479 -146307451 + AluSq SINE Alu 1 292 -21 265 305 107 42 chrX 16293873 16294194 -146305736 + L2 LINE L2 2641 2979 -293 874 249 5 5 chrX 16295550 16295751 -146304179 + MER63A DNA MER1_type 8 208 -2 213 229 21 0 chrX 16295754 16295802 -146304128 + (TATG)n Simple_repeat Simple_repeat 4 52 0 2258 104 17 3 chrX 16295978 16296277 -146303653 + AluSx SINE Alu 1 303 -9 625 266 65 15 chrX 16296280 16296479 -146303451 + MIR SINE MIR 28 236 -26 2052 91 23 19 chrX 16296665 16296974 -146302956 + AluSq SINE Alu 1 310 -3 1813 161 3 7 chrX 16297965 16298250 -146301680 + AluJo SINE Alu 1 284 -28 237 306 83 0 chrX 16298267 16298339 -146301591 + L2 LINE L2 3168 3245 -27 * 453 211 0 11 chrX 16298325 16298415 -146301515 - L2 LINE L2 -37 3276 3188 1437 135 8 53 chrX 16298500 16298766 -146301164 + L1MB8 LINE L1 5920 6173 -5 660 265 27 55 chrX 16299232 16299372 -146300558 - MIR SINE MIR 0 262 131 2225 129 0 0 chrX 16299372 16299674 -146300256 + AluSx SINE Alu 1 302 -10 660 265 27 55 chrX 16299674 16299790 -146300140 - MIR SINE MIR -131 131 13 535 249 34 67 chrX 16300343 16300552 -146299378 + L2 LINE L2 3112 3313 0 2346 96 3 3 chrX 16300554 16300866 -146299064 + AluSx SINE Alu 1 312 0 2497 197 54 82 chrX 16301062 16301964 -146297966 - L1MC5 LINE L1 -194 7767 6891 388 237 79 72 chrX 16302107 16302259 -146297671 + L1MC5 LINE L1 7087 7239 -722 1573 189 0 15 chrX 16302269 16302533 -146297397 + AluJo SINE Alu 1 260 -52 23 0 0 0 chrX 16302547 16302570 -146297360 + AT_rich Low_complexity Low_complexity 1 23 0 2029 147 0 13 chrX 16302570 16302884 -146297046 + AluJb SINE Alu 1 310 -2 235 186 0 124 chrX 16302897 16302994 -146296936 + L1MC5 LINE L1 7238 7322 -639 324 281 141 7 chrX 16303367 16303502 -146296428 + MIR3 SINE MIR 50 202 -6 946 178 0 72 chrX 16303802 16304010 -146295920 + L1MB7 LINE L1 5973 6165 -19 644 129 0 0 chrX 16304507 16304600 -146295330 + AluJ/FLAM SINE Alu 2 94 -218 2123 146 0 0 chrX 16304798 16305099 -146294831 + AluJb SINE Alu 1 301 -11 1523 207 52 26 chrX 16305313 16305734 -146294196 + L1M4 LINE L1 4484 4915 -1231 2368 73 14 0 chrX 16305742 16306030 -146293900 + AluSc SINE Alu 4 295 -14 2422 78 0 3 chrX 16306031 16306339 -146293591 + AluY SINE Alu 1 307 -4 1259 155 56 0 chrX 16306356 16306608 -146293322 + L1MCa LINE L1 2163 2428 -3998 2242 92 0 14 chrX 16306616 16306910 -146293020 + AluSx SINE Alu 21 310 -2 3005 220 31 20 chrX 16306939 16307738 -146292192 + L1MCa LINE L1 2514 3321 -3105 2275 117 0 0 chrX 16307738 16308047 -146291883 + AluSx SINE Alu 1 309 -3 812 132 78 42 chrX 16308047 16308207 -146291723 + L1MA7 LINE L1 5881 6049 -242 2167 129 0 19 chrX 16308207 16308525 -146291405 + AluJb SINE Alu 1 312 0 1571 174 3 40 chrX 16309003 16309325 -146290605 + AluJo SINE Alu 1 310 -2 283 279 78 39 chrX 16309384 16309563 -146290367 - L1ME4a LINE L1 0 6121 5936 1691 164 25 4 chrX 16309709 16309990 -146289940 + AluJb SINE Alu 1 287 -25 2382 100 0 0 chrX 16310104 16310403 -146289527 + AluSx SINE Alu 1 299 -13 23 0 0 0 chrX 16311156 16311179 -146288751 + AT_rich Low_complexity Low_complexity 1 23 0 2376 94 0 0 chrX 16312006 16312303 -146287627 + AluSx SINE Alu 1 297 -15 231 170 0 0 chrX 16312684 16312731 -146287199 + T-rich Low_complexity Low_complexity 1 47 0 2252 97 3 6 chrX 16313056 16313367 -146286563 + AluSg SINE Alu 1 310 0 834 125 0 23 chrX 16313395 16313562 -146286368 + FLAM_C SINE Alu 17 180 0 34 19 0 19 chrX 16313603 16313628 -146286302 + AT_rich Low_complexity Low_complexity 1 25 -26 928 118 0 0 chrX 16313628 16313755 -146286175 + FLAM_C SINE Alu 1 127 -6 34 19 0 19 chrX 16313755 16313781 -146286149 + AT_rich Low_complexity Low_complexity 25 51 0 2100 143 60 17 chrX 16314038 16314387 -146285543 + THE1B LTR MaLR 1 364 0 340 215 59 129 chrX 16314518 16314704 -146285226 - MIR SINE MIR -13 249 77 316 268 71 39 chrX 16314781 16314908 -146285022 + L2 LINE L2 3141 3271 -1 1946 144 7 3 chrX 16314977 16315262 -146284668 - AluJb SINE Alu -20 292 7 1522 124 3 150 chrX 16315291 16315645 -146284285 - AluJb SINE Alu 0 302 1 2264 117 0 0 chrX 16316739 16317038 -146282892 + AluSq SINE Alu 1 299 -14 1878 127 99 0 chrX 16317046 16317329 -146282601 + AluSx SINE Alu 1 311 -1 21 0 0 0 chrX 16318433 16318454 -146281476 + AT_rich Low_complexity Low_complexity 1 21 0 2242 113 0 19 chrX 16319085 16319396 -146280534 + AluSx SINE Alu 1 305 -7 1848 113 16 68 chrX 16319557 16319867 -146280063 + AluSx SINE Alu 1 294 -18 2267 115 0 10 chrX 16319867 16320172 -146279758 + AluSx SINE Alu 1 302 -10 1049 147 13 0 chrX 16320172 16320329 -146279601 + AluSg/x SINE Alu 132 290 -20 2131 122 0 3 chrX 16320563 16320859 -146279071 + AluSx SINE Alu 1 295 -17 31 0 0 0 chrX 16324298 16324329 -146275601 + GC_rich Low_complexity Low_complexity 1 31 0 2288 76 0 3 chrX 16325626 16325914 -146274016 - AluY SINE Alu -24 287 1 2681 46 0 3 chrX 16325941 16326248 -146273682 + AluSp SINE Alu 1 306 -7 349 211 84 78 chrX 16326722 16326864 -146273066 - MIR SINE MIR 0 262 120 234 216 0 0 chrX 16327103 16327154 -146272776 + L2 LINE L2 3263 3313 0 2420 86 0 0 chrX 16327554 16327857 -146272073 + AluSq SINE Alu 1 303 -10 201 287 139 41 chrX 16328679 16328801 -146271129 - L2 LINE L2 -2 3270 3137 1866 110 3 73 chrX 16328988 16329288 -146270642 + AluJb SINE Alu 17 295 -17 1949 139 3 3 chrX 16330037 16330325 -146269605 + AluJb SINE Alu 1 288 -24 1121 228 58 32 chrX 16330716 16330836 -146269094 - L1ME3 LINE L1 0 6162 6047 1344 158 39 84 chrX 16330836 16331147 -146268783 + AluJo SINE Alu 1 297 -15 1121 228 58 32 chrX 16331147 16331338 -146268592 - L1ME3 LINE L1 -115 6047 5843 2075 115 28 0 chrX 16331630 16331918 -146268012 + AluSp SINE Alu 1 296 -17 2375 95 0 0 chrX 16331921 16332227 -146267703 + AluSq SINE Alu 3 308 -5 2273 155 73 0 chrX 16332422 16332821 -146267109 + MSTA LTR MaLR 1 428 0 1632 191 81 99 chrX 16333384 16333532 -146266398 - L1MC5 LINE L1 -101 7860 7711 2395 80 0 29 chrX 16333532 16333845 -146266085 - AluSq SINE Alu -9 304 1 1632 191 81 99 chrX 16333845 16333868 -146266062 - L1MC5 LINE L1 -250 7711 7689 1866 130 88 161 chrX 16333868 16333925 -146266005 - MLT1D LTR MaLR 0 505 445 2064 103 41 24 chrX 16333925 16334058 -146265872 + AluSx SINE Alu 1 130 -182 2388 77 0 46 chrX 16334058 16334382 -146265548 + AluSx SINE Alu 1 309 -3 2064 103 41 24 chrX 16334382 16334540 -146265390 + AluSx SINE Alu 130 297 -15 1866 130 88 161 chrX 16334540 16334767 -146265163 - MLT1D LTR MaLR -60 445 277 1577 195 0 3 chrX 16334767 16335049 -146264881 - AluJo SINE Alu -31 281 1 1866 130 88 161 chrX 16335049 16335308 -146264622 - MLT1D LTR MaLR -228 277 1 1632 191 81 99 chrX 16335308 16335415 -146264515 - L1MC5 LINE L1 -272 7689 7582 2288 74 0 7 chrX 16335415 16335700 -146264230 + AluSc SINE Alu 2 284 -25 1632 191 81 99 chrX 16335700 16335780 -146264150 - L1MC5 LINE L1 -379 7582 7502 2180 110 3 13 chrX 16335780 16336080 -146263850 - AluSx SINE Alu -15 297 1 1632 191 81 99 chrX 16336080 16336394 -146263536 - L1MC5 LINE L1 -459 7502 7197 896 201 17 6 chrX 16336401 16336580 -146263350 + MER5A DNA MER1_type 1 181 -8 2024 157 0 3 chrX 16336580 16336893 -146263037 + AluJo SINE Alu 1 312 0 858 151 0 0 chrX 16337159 16337285 -146262645 + FLAM_C SINE Alu 2 127 -6 2144 82 4 0 chrX 16337330 16337599 -146262331 + AluSq SINE Alu 1 270 -43 2488 86 3 3 chrX 16338936 16339249 -146260681 - AluSq SINE Alu 0 313 1 865 194 41 36 chrX 16339362 16339558 -146260372 - MER3 DNA MER1_type -4 205 9 550 234 163 0 chrX 16339588 16339729 -146260201 + MER5A DNA MER1_type 26 189 0 1873 172 0 3 chrX 16339776 16340073 -146259857 + AluSx SINE Alu 1 296 -16 245 264 0 0 chrX 16340074 16340127 -146259803 + MSTD LTR MaLR 51 103 -271 838 158 0 29 chrX 16340127 16340266 -146259664 + FRAM SINE Alu 21 155 -21 2040 89 63 7 chrX 16340271 16340573 -146259357 + AluSc SINE Alu 2 309 0 1085 192 133 31 chrX 16340589 16340844 -146259086 + MSTD LTR MaLR 116 396 0 4776 212 13 55 chrX 16340846 16341026 -146258904 + MSTD-int LTR MaLR 2 188 -1547 1622 136 4 38 chrX 16341026 16341290 -146258640 + AluSx SINE Alu 44 298 -14 4776 212 13 55 chrX 16341290 16342262 -146257668 + MSTD-int LTR MaLR 188 1105 -630 2378 97 0 0 chrX 16342295 16342593 -146257337 - AluSx SINE Alu -14 298 1 254 261 90 67 chrX 16343011 16343145 -146256785 - L2 LINE L2 -10 3262 3126 1005 133 22 17 chrX 16343599 16343749 -146256181 - L1MA10 LINE L1 -8 6326 6173 2543 79 0 0 chrX 16343749 16344054 -146255876 - AluSx SINE Alu -7 305 1 1005 133 22 17 chrX 16344054 16344083 -146255847 - L1MA10 LINE L1 -161 6173 6146 2184 98 0 7 chrX 16344084 16344379 -146255551 + AluSg SINE Alu 2 294 -16 278 329 15 29 chrX 16344382 16344519 -146255411 + MER51A-int LTR ERV1 6202 6336 -869 1007 156 23 0 chrX 16344662 16344835 -146255095 - MER51-int LTR ERV1 -112 7704 6831 2131 142 0 0 chrX 16344835 16345137 -146254793 + AluSx SINE Alu 1 302 -10 1705 229 26 13 chrX 16345267 16345840 -146254090 + MER51A-int LTR ERV1 6548 7816 0 2985 114 211 2 chrX 16345841 16346055 -146253875 + MER51A LTR ERV1 1 169 -465 1911 109 64 18 chrX 16346055 16346338 -146253592 - AluSg SINE Alu -6 304 9 2985 114 211 2 chrX 16346338 16346640 -146253290 + MER51A LTR ERV1 169 625 -9 1784 151 38 3 chrX 16346930 16347222 -146252708 + AluJo SINE Alu 1 302 -10 1052 157 12 0 chrX 16347228 16347400 -146252530 + FRAM SINE Alu 1 174 -2 415 236 94 16 chrX 16347531 16347669 -146252261 - LTR50 LTR ERVL -578 195 39 441 197 51 0 chrX 16347669 16347780 -146252150 + L1ME3A LINE L1 5487 5605 -559 2286 115 0 10 chrX 16347788 16348093 -146251837 + AluSx SINE Alu 1 302 -10 842 232 56 47 chrX 16348149 16348271 -146251659 + L1ME3A LINE L1 5578 5697 -473 1947 138 10 10 chrX 16348271 16348567 -146251363 + AluJo SINE Alu 3 298 -14 842 232 56 47 chrX 16348567 16348784 -146251146 + L1ME3A LINE L1 5697 5920 -250 2064 118 0 0 chrX 16349069 16349357 -146250573 - AluSx SINE Alu -9 303 16 2188 100 3 3 chrX 16349477 16349777 -146250153 + AluSx SINE Alu 1 300 -12 2219 187 30 8 chrX 16349778 16350249 -146249681 - L1M4 LINE L1 -1293 5133 4653 971 180 0 22 chrX 16350254 16350437 -146249493 - AluJb SINE Alu -22 290 112 2837 185 51 26 chrX 16350464 16350798 -146249132 - L1MCa LINE L1 -3667 2759 2435 2188 114 0 3 chrX 16350798 16351106 -146248824 - AluJb SINE Alu -5 307 1 2837 185 51 26 chrX 16351106 16351568 -146248362 - L1MCa LINE L1 -3991 2435 1924 2097 106 33 0 chrX 16351573 16351875 -146248055 + AluSx SINE Alu 1 312 0 2343 81 0 0 chrX 16353255 16353553 -146246377 + AluSq SINE Alu 1 298 -15 2198 87 0 40 chrX 16353928 16354250 -146245680 + AluSq SINE Alu 1 309 -4 1533 196 113 60 chrX 16354261 16354318 -146245612 - MLT1D LTR MaLR 0 505 452 1612 195 0 7 chrX 16354318 16354620 -146245310 + AluJo SINE Alu 1 300 -12 1533 196 113 60 chrX 16354620 16354876 -146245054 - MLT1D LTR MaLR -53 452 156 2261 101 0 0 chrX 16354876 16355182 -146244748 + AluSq SINE Alu 1 306 -7 1533 196 113 60 chrX 16355182 16355346 -146244584 - MLT1D LTR MaLR -349 156 2 534 251 170 0 chrX 16355362 16355549 -146244381 - MIR SINE MIR -3 259 41 1574 118 24 52 chrX 16355594 16355770 -146244160 - AluJo SINE Alu 0 309 143 2205 111 0 0 chrX 16355770 16356077 -146243853 - AluSp SINE Alu -6 307 1 1574 118 24 52 chrX 16356077 16356217 -146243713 - AluJo SINE Alu -166 143 1 1661 213 129 48 chrX 16356446 16356522 -146243408 - MLT1F LTR MaLR -28 514 446 1918 133 3 13 chrX 16356522 16356657 -146243273 + AluSx SINE Alu 1 136 -176 2203 84 24 0 chrX 16356657 16356953 -146242977 + AluSg SINE Alu 1 303 -7 1918 133 3 13 chrX 16356953 16357118 -146242812 + AluSx SINE Alu 136 298 -14 1661 213 129 48 chrX 16357118 16357515 -146242415 - MLT1F LTR MaLR -96 446 3 931 262 31 66 chrX 16357536 16357960 -146241970 + MLT1K LTR MaLR 180 588 0 1687 139 9 59 chrX 16358011 16358335 -146241595 + AluJo SINE Alu 1 308 -4 2053 94 4 0 chrX 16358338 16358615 -146241315 + AluSx SINE Alu 29 306 -6 2248 79 10 3 chrX 16358978 16359282 -146240648 + AluSx SINE Alu 2 307 -5 1933 118 0 14 chrX 16359759 16360075 -146239855 - AluSx SINE Alu 0 312 1 370 214 90 0 chrX 16360351 16360440 -146239490 + MER5A DNA MER1_type 9 105 -84 198 156 0 0 chrX 16360536 16360581 -146239349 + (CAAAC)n Simple_repeat Simple_repeat 1 45 0 180 0 0 0 chrX 16360637 16360657 -146239273 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1895 81 0 0 chrX 16361010 16361257 -146238673 + AluSx SINE Alu 57 303 -9 1722 146 14 0 chrX 16361849 16362130 -146237800 + AluJo SINE Alu 1 285 -27 297 0 0 0 chrX 16362139 16362172 -146237758 + (TTTAA)n Simple_repeat Simple_repeat 2 34 0 688 158 42 0 chrX 16362213 16362333 -146237597 + FRAM SINE Alu 49 173 -3 650 125 17 203 chrX 16362360 16362456 -146237474 + MER53 DNA DNA 1 113 -76 1854 84 18 131 chrX 16362456 16362508 -146237422 - L1MA3 LINE L1 0 6305 6249 2327 113 48 22 chrX 16362508 16362863 -146237067 - THE1B LTR MaLR 0 364 1 1854 84 18 131 chrX 16362863 16363053 -146236877 - L1MA3 LINE L1 -56 6249 6119 2115 100 0 0 chrX 16363053 16363343 -146236587 - AluSg1 SINE Alu -19 290 1 1854 84 18 131 chrX 16363343 16363481 -146236449 - L1MA3 LINE L1 -186 6119 5967 650 125 17 203 chrX 16363481 16363584 -146236346 + MER53 DNA DNA 113 233 44 339 78 0 0 chrX 16363584 16363635 -146236295 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 2299 43 0 0 chrX 16363637 16363919 -146236011 - AluY SINE Alu -29 282 1 650 125 17 203 chrX 16363919 16363947 -146235983 + MER53 DNA DNA 157 189 0 290 206 183 38 chrX 16364083 16364214 -146235716 - LTR33 LTR ERVL -284 237 88 482 215 47 19 chrX 16364245 16364352 -146235578 - MER63 DNA MER1_type -326 736 1 249 247 39 26 chrX 16364352 16364428 -146235502 - LTR33 LTR ERVL -442 79 3 296 279 81 12 chrX 16364493 16364579 -146235351 + LTR33 LTR ERVL 273 364 -157 1054 247 50 34 chrX 16364581 16364937 -146234993 - LTR41 LTR ERVL 0 795 417 496 202 207 80 chrX 16365002 16365152 -146234778 - LTR41 LTR ERVL -501 272 92 2032 105 0 37 chrX 16365152 16365190 -146234740 - AluSx SINE Alu 0 312 274 188 33 0 33 chrX 16365190 16365220 -146234710 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2032 105 0 37 chrX 16365220 16365505 -146234425 - AluSx SINE Alu -38 274 1 496 202 207 80 chrX 16365505 16365542 -146234388 - LTR41 LTR ERVL -681 92 61 183 100 0 0 chrX 16365542 16365572 -146234358 + (T)n Simple_repeat Simple_repeat 1 30 0 702 130 0 0 chrX 16365572 16365672 -146234258 - HY3 scRNA scRNA -1 100 1 309 118 0 20 chrX 16365672 16365723 -146234207 - LTR41 LTR ERVL -700 73 24 443 277 6 31 chrX 16365737 16365896 -146234034 + LTR33 LTR ERVL 367 521 0 1971 124 0 7 chrX 16365974 16366287 -146233643 + AluSx SINE Alu 1 311 0 851 127 24 0 chrX 16366351 16366477 -146233453 - FLAM_C SINE Alu 0 133 5 2533 126 31 87 chrX 16366481 16366837 -146233093 - MSTC LTR MaLR -2 426 99 737 157 0 25 chrX 16366837 16366948 -146232982 + AluJo/FLAM SINE Alu 1 110 -192 1845 149 33 0 chrX 16366948 16367250 -146232680 - AluJo SINE Alu 0 312 1 2533 126 31 87 chrX 16367259 16367353 -146232577 - MSTC LTR MaLR -329 99 1 2215 99 0 0 chrX 16367855 16368158 -146231772 + AluSx SINE Alu 1 303 -9 271 363 38 42 chrX 16368439 16368676 -146231254 - L2 LINE L2 -508 2806 2571 354 314 29 14 chrX 16368805 16368945 -146230985 - MER87 LTR ERV1 0 541 400 2084 118 14 0 chrX 16369017 16369314 -146230616 + AluSx SINE Alu 1 301 -11 1981 112 7 10 chrX 16369553 16369847 -146230083 - AluSq SINE Alu -20 293 1 1149 182 0 0 chrX 16370009 16370212 -146229718 + AluJo SINE Alu 1 203 -109 2393 64 0 10 chrX 16370431 16370729 -146229201 + AluSx SINE Alu 4 298 -14 1168 241 28 4 chrX 16370945 16371194 -146228736 - MIR SINE MIR 0 262 8 318 67 50 50 chrX 16372191 16372209 -146227721 + MSTB LTR MaLR 367 384 -42 2137 122 0 0 chrX 16372209 16372521 -146227409 - AluSx SINE Alu 0 312 1 318 67 50 50 chrX 16372521 16372562 -146227368 + MSTB LTR MaLR 383 426 0 1243 162 76 0 chrX 16372566 16372776 -146227154 + MLT1C LTR MaLR 242 467 0 1904 146 0 7 chrX 16373045 16373347 -146226583 + AluSx SINE Alu 1 300 -12 801 102 0 0 chrX 16373468 16373576 -146226354 + AluSg/x SINE Alu 194 301 -11 1977 174 40 19 chrX 16373662 16374022 -146225908 - MLT1B LTR MaLR 0 390 20 1571 174 0 14 chrX 16374022 16374310 -146225620 + AluJo SINE Alu 1 284 -28 1977 174 40 19 chrX 16374310 16374322 -146225608 - MLT1B LTR MaLR -370 20 10 2011 104 0 14 chrX 16374322 16374634 -146225296 + AluSx SINE Alu 1 308 0 3362 86 13 20 chrX 16374775 16374840 -146225090 - MLT2A2 LTR ERVL 0 453 389 2279 92 0 3 chrX 16374840 16375146 -146224784 + AluSx SINE Alu 1 305 -7 3362 86 13 20 chrX 16375146 16375536 -146224394 - MLT2A2 LTR ERVL -64 389 1 1752 147 52 0 chrX 16375764 16376050 -146223880 - AluJb SINE Alu -11 301 1 295 302 12 12 chrX 16376580 16376666 -146223264 - MIR SINE MIR -75 133 48 518 133 0 0 chrX 16376817 16376892 -146223038 + AluJ/FLAM SINE Alu 2 76 -236 2138 104 0 19 chrX 16376997 16377338 -146222592 + AluSx SINE Alu 1 312 0 1022 130 12 0 chrX 16377339 16377500 -146222430 + AluSg/x SINE Alu 135 297 -15 513 248 220 6 chrX 16377923 16378222 -146221708 - LTR16A LTR ERVL 0 450 16 1027 147 0 0 chrX 16378502 16378658 -146221272 - FRAM SINE Alu -23 153 1 1479 183 35 11 chrX 16378668 16378952 -146220978 - AluJb SINE Alu -21 291 1 2119 99 14 0 chrX 16378960 16379253 -146220677 - AluSx SINE Alu -10 302 6 2007 107 43 13 chrX 16379266 16379565 -146220365 - AluSg SINE Alu -2 308 1 349 227 33 73 chrX 16379606 16379756 -146220174 - L1ME4a LINE L1 -2 6119 5976 278 303 0 0 chrX 16379819 16379895 -146220035 + MIR SINE MIR 14 89 -173 231 36 0 0 chrX 16379896 16379924 -146220006 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 807 123 14 36 chrX 16379937 16380075 -146219855 + AluJo SINE Alu 1 135 -177 190 338 29 0 chrX 16380163 16380231 -146219699 - L2 LINE L2 -57 3256 3187 258 241 117 97 chrX 16380232 16380377 -146219553 + MIR SINE MIR 102 249 -13 2205 49 7 25 chrX 16380471 16380796 -146219134 + AluY SINE Alu 1 320 0 233 293 101 0 chrX 16380930 16381029 -146218901 + LTR33A LTR ERVL 300 408 -115 874 49 0 0 chrX 16381066 16381168 -146218762 + AluSq/x SINE Alu 35 136 -177 2033 117 17 3 chrX 16381168 16381468 -146218462 + AluSx SINE Alu 1 304 -8 311 290 134 18 chrX 16381585 16381809 -146218121 + L3b LINE CR1 1135 1384 -199 1036 197 14 40 chrX 16381845 16382068 -146217862 + MER20 DNA MER1_type 3 219 0 913 150 42 31 chrX 16382154 16382347 -146217583 - L1MB7 LINE L1 0 6184 5990 239 164 213 0 chrX 16382567 16382628 -146217302 - MER5A DNA MER1_type -107 82 9 356 65 32 16 chrX 16382719 16382781 -146217149 - L1MB8 LINE L1 -6 6172 6110 479 103 90 26 chrX 16382783 16382861 -146217069 + AluJ/FRAM SINE Alu 216 298 -14 522 124 48 29 chrX 16382863 16382968 -146216962 - L1MB7 LINE L1 -59 6125 6019 1850 114 3 56 chrX 16382968 16383274 -146216656 + AluSx SINE Alu 1 290 -22 1233 136 0 0 chrX 16383279 16383523 -146216407 + AluJb SINE Alu 129 372 0 2039 145 3 20 chrX 16383529 16383650 -146216280 - L1MB7 LINE L1 -145 6039 5919 349 294 47 39 chrX 16383650 16383905 -146216025 - L1PA10 LINE L1 -243 5925 5669 2005 116 14 0 chrX 16384042 16384334 -146215596 - AluSx SINE Alu -16 296 1 2070 161 27 47 chrX 16384621 16384674 -146215256 + MSTD LTR MaLR 1 54 -342 1557 109 130 43 chrX 16384674 16384950 -146214980 + AluJo SINE Alu 1 300 -12 2070 161 27 47 chrX 16384950 16385300 -146214630 + MSTD LTR MaLR 54 396 0 217 306 14 28 chrX 16385538 16385610 -146214320 + L2 LINE L2 3201 3271 -1 21 0 0 0 chrX 16385645 16385666 -146214264 + AT_rich Low_complexity Low_complexity 1 21 0 1743 225 151 52 chrX 16385842 16385902 -146214028 - MLT1G1 LTR MaLR 0 595 542 2443 55 0 3 chrX 16385902 16386210 -146213720 - AluY SINE Alu -4 307 1 1743 225 151 52 chrX 16386210 16386631 -146213299 - MLT1G1 LTR MaLR -53 542 53 840 113 0 30 chrX 16386631 16386764 -146213166 + FLAM_C SINE Alu 1 129 -4 1743 225 151 52 chrX 16386764 16386819 -146213111 - MLT1G1 LTR MaLR -542 53 5 271 221 16 10 chrX 16387319 16387415 -146212515 - L1MC4 LINE L1 -31 8011 7828 26 30 0 0 chrX 16387561 16387594 -146212336 + AT_rich Low_complexity Low_complexity 1 33 0 2244 112 0 0 chrX 16387689 16388001 -146211929 - AluSx SINE Alu 0 312 1 478 151 14 0 chrX 16388110 16388183 -146211747 + AluJb SINE Alu 49 122 -190 241 137 20 0 chrX 16388211 16388262 -146211668 + LTR66 LTR ERVL 388 439 -171 258 289 0 0 chrX 16388270 16388360 -146211570 + L1MC4 LINE L1 6614 6703 -1339 339 213 0 0 chrX 16388363 16388438 -146211492 + (TA)n Simple_repeat Simple_repeat 2 76 0 243 0 0 0 chrX 16388438 16388465 -146211465 + (CA)n Simple_repeat Simple_repeat 2 28 0 974 162 0 28 chrX 16388465 16388644 -146211286 + AluSg/x SINE Alu 129 302 -8 196 250 188 0 chrX 16388686 16388766 -146211164 + MIR SINE MIR 156 250 -12 279 203 224 37 chrX 16388775 16388892 -146211038 + MIR SINE MIR 12 148 -103 1903 139 32 16 chrX 16388901 16389210 -146210720 - MLT1F1 LTR MaLR 0 567 254 997 153 5 26 chrX 16389221 16389411 -146210519 - AluJo SINE Alu -10 302 117 2068 119 3 10 chrX 16389411 16389723 -146210207 - AluSx SINE Alu -2 310 1 865 171 48 64 chrX 16389723 16389910 -146210020 - MLT1F1 LTR MaLR -311 256 73 806 208 104 91 chrX 16390323 16390443 -146209487 - MIR SINE MIR 0 262 136 2156 96 0 3 chrX 16390443 16390734 -146209196 - AluSx SINE Alu -22 290 1 806 208 104 91 chrX 16390734 16390844 -146209086 - MIR SINE MIR -126 136 29 2003 118 28 0 chrX 16391148 16391437 -146208493 + AluSx SINE Alu 1 297 -15 2368 77 0 0 chrX 16391599 16391896 -146208034 - AluSq SINE Alu -16 297 1 342 310 8 76 chrX 16392046 16392251 -146207679 - MLT1L LTR MaLR -116 499 279 506 157 0 0 chrX 16392468 16392557 -146207373 + MER53 DNA DNA 5 93 -96 574 75 12 0 chrX 16392733 16392813 -146207117 + MER53 DNA DNA 109 189 0 2111 92 7 7 chrX 16392913 16393205 -146206725 - AluSx SINE Alu -19 293 2 24 0 0 0 chrX 16393505 16393529 -146206401 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 16394083 16394112 -146205818 + AT_rich Low_complexity Low_complexity 1 29 0 222 37 0 0 chrX 16394300 16394327 -146205603 + (CTG)n Simple_repeat Simple_repeat 3 29 0 251 140 20 0 chrX 16394425 16394475 -146205455 + (TG)n Simple_repeat Simple_repeat 1 51 0 180 184 66 92 chrX 16397753 16397829 -146202101 - L3 LINE CR1 -1067 510 437 647 281 78 29 chrX 16398942 16399184 -146200746 - MIR SINE MIR -1 261 8 1560 183 3 11 chrX 16399221 16399506 -146200424 - AluJb SINE Alu -21 291 9 2167 108 0 3 chrX 16400031 16400317 -146199613 - AluSx SINE Alu -23 289 5 2190 97 6 19 chrX 16400427 16400738 -146199192 - AluSx SINE Alu -4 308 2 2312 56 3 17 chrX 16400991 16401278 -146198652 - AluY SINE Alu -5 306 24 565 212 14 27 chrX 16401290 16401436 -146198494 - L1MB8 LINE L1 0 6178 6035 1838 131 0 77 chrX 16401496 16401664 -146198266 - AluJb SINE Alu -23 289 154 2379 107 3 0 chrX 16401664 16401974 -146197956 - AluSx SINE Alu -1 311 1 1838 131 0 77 chrX 16401974 16402118 -146197812 - AluJb SINE Alu -158 154 1 1770 168 0 29 chrX 16402180 16402490 -146197440 - AluJb SINE Alu -11 301 1 2114 143 0 3 chrX 16402521 16402835 -146197095 + AluSq SINE Alu 1 313 0 2257 81 10 3 chrX 16402846 16403141 -146196789 + AluSp SINE Alu 1 297 -16 21 36 0 0 chrX 16404127 16404155 -146195775 + AT_rich Low_complexity Low_complexity 1 28 0 2117 128 0 0 chrX 16404222 16404519 -146195411 + AluSx SINE Alu 1 297 -15 21 57 0 0 chrX 16404968 16405003 -146194927 + AT_rich Low_complexity Low_complexity 1 35 0 277 200 100 50 chrX 16405039 16405139 -146194791 - L2 LINE L2 -1 3312 3208 2051 120 0 0 chrX 16405156 16405430 -146194500 - AluSx SINE Alu -25 287 14 2736 88 31 149 chrX 16405493 16405982 -146193948 - Tigger2 DNA MER2_type -3 2715 1 355 266 119 21 chrX 16406028 16406171 -146193759 - L2 LINE L2 -262 3051 2895 2045 130 13 7 chrX 16406194 16406502 -146193428 + AluJb SINE Alu 1 310 -2 2374 89 0 0 chrX 16407637 16407940 -146191990 - AluSg SINE Alu -7 303 1 2452 73 0 3 chrX 16408085 16408386 -146191544 + AluSg SINE Alu 1 300 -10 409 238 158 0 chrX 16408496 16408597 -146191333 + L2 LINE L2 3182 3298 -15 285 29 0 0 chrX 16408971 16409005 -146190925 + (TG)n Simple_repeat Simple_repeat 2 35 0 3691 152 48 21 chrX 16409022 16409134 -146190796 - Tigger1 DNA MER2_type 0 2418 2311 2140 112 10 0 chrX 16409134 16409430 -146190500 + AluSx SINE Alu 1 299 -13 3691 152 48 21 chrX 16409430 16409981 -146189949 - Tigger1 DNA MER2_type -107 2311 1737 372 197 30 0 chrX 16409968 16410034 -146189896 - AluJ/FLAM SINE Alu -234 68 1 * 1804 127 4 11 chrX 16410040 16410308 -146189622 - AluSq SINE Alu -6 307 42 942 235 76 73 chrX 16410310 16410396 -146189534 - L1MCc LINE L1 -5152 1271 1187 2105 204 114 32 chrX 16410396 16410710 -146189220 - MER87 LTR ERV1 0 541 169 2191 116 3 0 chrX 16410710 16411002 -146188928 + AluJb SINE Alu 1 293 -19 2105 204 114 32 chrX 16411002 16411187 -146188743 - MER87 LTR ERV1 -372 169 1 942 235 76 73 chrX 16411187 16411496 -146188434 - L1MCc LINE L1 -5236 1187 875 2292 57 0 4 chrX 16412044 16412369 -146187561 - AluY SINE Alu 0 325 2 420 297 87 55 chrX 16412651 16412915 -146187015 - L1MDa LINE L1 -745 1745 1441 1314 77 35 0 chrX 16412926 16413096 -146186834 - L1PA14 LINE L1 -1 6160 5985 1773 75 18 0 chrX 16413142 16413370 -146186560 - L1PA14 LINE L1 -1 6160 5929 601 144 44 0 chrX 16413389 16413479 -146186451 - AluJ/FLAM SINE Alu -217 95 2 23 0 0 0 chrX 16413584 16413607 -146186323 + AT_rich Low_complexity Low_complexity 1 23 0 268 289 85 24 chrX 16413699 16413974 -146185956 - L1MDa LINE L1 -4862 1257 949 195 227 0 0 chrX 16414004 16414070 -146185860 + (TA)n Simple_repeat Simple_repeat 2 67 0 809 172 0 8 chrX 16414071 16414193 -146185737 - FLAM_C SINE Alu -12 121 1 350 363 120 21 chrX 16414465 16414653 -146185277 - L1MDa LINE L1 -5470 649 481 2409 93 0 0 chrX 16414653 16414954 -146184976 - AluSx SINE Alu -11 301 1 350 363 120 21 chrX 16414954 16415098 -146184832 - L1MDa LINE L1 -5638 481 284 1987 126 87 36 chrX 16415101 16415458 -146184472 + THE1C LTR MaLR 1 375 0 2020 70 37 60 chrX 16415658 16415956 -146183974 + AluSq SINE Alu 21 311 -2 219 304 108 6 chrX 16416361 16416519 -146183411 + L2 LINE L2 1367 1540 -1774 964 137 63 47 chrX 16416642 16416832 -146183098 + MER20 DNA MER1_type 22 214 -5 420 287 85 44 chrX 16416915 16417256 -146182674 + L2 LINE L2 1707 2061 -1253 604 152 0 0 chrX 16417417 16417509 -146182421 - AluJ SINE Alu -10 302 211 759 154 8 8 chrX 16417510 16417627 -146182303 - AluJ SINE Alu -184 118 2 257 309 73 24 chrX 16417637 16417760 -146182170 + L2 LINE L2 2253 2381 -933 314 295 72 53 chrX 16417819 16418026 -146181904 + L2 LINE L2 2669 2879 -435 2345 90 0 16 chrX 16418419 16418731 -146181199 - AluSg1 SINE Alu -2 307 1 2374 81 0 0 chrX 16419371 16419669 -146180261 - AluSc SINE Alu -11 298 1 371 311 10 0 chrX 16419854 16419957 -146179973 + MIR SINE MIR 153 256 -6 2278 99 0 0 chrX 16420159 16420451 -146179479 - AluSq SINE Alu -21 292 1 222 227 121 15 chrX 16420545 16420611 -146179319 - MIR SINE MIR -72 190 118 2302 96 3 0 chrX 16420765 16421067 -146178863 - AluSp SINE Alu -10 303 1 1917 131 3 7 chrX 16421126 16421416 -146178514 - AluJb SINE Alu -23 289 1 1639 108 0 0 chrX 16422002 16422216 -146177714 - AluSg/x SINE Alu -12 300 87 2300 98 0 3 chrX 16422396 16422701 -146177229 - AluSg SINE Alu -1 309 6 2288 114 0 0 chrX 16423804 16424111 -146175819 - AluSg SINE Alu -3 307 1 1764 125 4 0 chrX 16424136 16424384 -146175546 - AluSx SINE Alu -15 297 49 803 159 179 0 chrX 16424467 16424612 -146175318 - AluSg/x SINE Alu -10 300 130 231 231 0 0 chrX 16425410 16425449 -146174481 - Tigger3(Golem) DNA MER2_type -2989 40 2 2239 93 36 0 chrX 16425612 16425914 -146174016 - AluSq SINE Alu 0 313 1 260 227 216 10 chrX 16426868 16426965 -146172965 - L2 LINE L2 -13 3300 3184 207 266 47 0 chrX 16426988 16427052 -146172878 - MIR SINE MIR -10 252 186 288 207 35 58 chrX 16427090 16427177 -146172753 + HsTC2 DNA Tc2 1 85 -1813 195 69 0 0 chrX 16427181 16427210 -146172720 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2108 115 0 0 chrX 16427212 16427490 -146172440 - AluSg SINE Alu -32 278 1 2553 71 0 7 chrX 16427490 16427799 -146172131 - AluSq SINE Alu -5 308 1 266 200 229 0 chrX 16427935 16428040 -146171890 + MER3 DNA MER1_type 28 156 -53 1376 137 0 89 chrX 16428053 16428323 -146171607 + AluJb SINE Alu 63 308 -4 871 163 0 0 chrX 16428325 16428454 -146171476 - MER3 DNA MER1_type -80 129 1 734 105 92 92 chrX 16428808 16428850 -146171080 - MSTA LTR MaLR 0 428 387 2185 100 7 19 chrX 16428850 16429160 -146170770 + AluSx SINE Alu 1 306 -6 734 105 92 92 chrX 16429160 16429269 -146170661 - MSTA LTR MaLR -40 388 277 1388 102 0 0 chrX 16429271 16429448 -146170482 - AluSc SINE Alu -1 308 132 2020 86 9 93 chrX 16429448 16429772 -146170158 - AluSc SINE Alu -12 297 1 1477 154 47 18 chrX 16429772 16430051 -146169879 - MSTA LTR MaLR -141 287 1 1790 156 3 10 chrX 16430059 16430377 -146169553 - AluJb SINE Alu 0 316 1 637 236 44 28 chrX 16430645 16430827 -146169103 - L1ME LINE L1 -362 5800 5616 1600 92 40 31 chrX 16431548 16431775 -146168155 - MER30 DNA MER1_type -1 229 1 1222 149 39 0 chrX 16431907 16432088 -146167842 + MER5A DNA MER1_type 2 189 0 2517 87 0 0 chrX 16432318 16432630 -146167300 + AluSx SINE Alu 1 312 0 219 36 0 0 chrX 16433590 16433618 -146166312 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 374 276 36 76 chrX 16433650 16433821 -146166109 - L1ME LINE L1 -2264 5544 5389 810 190 0 29 chrX 16433821 16433958 -146165972 - FLAM_C SINE Alu 0 133 1 374 276 36 76 chrX 16433958 16434087 -146165843 - L1ME LINE L1 -2419 5389 5256 733 211 25 12 chrX 16434290 16434451 -146165479 + MER97a DNA MER1_type? 1 163 -731 1128 270 148 44 chrX 16434489 16434960 -146164970 - L1ME LINE L1 -954 5192 4771 2200 84 0 14 chrX 16434960 16435268 -146164662 + AluSx SINE Alu 2 305 0 1128 270 148 44 chrX 16435268 16435654 -146164276 - L1ME LINE L1 -1375 4771 4231 1974 124 17 7 chrX 16436091 16436389 -146163541 - AluJo SINE Alu -11 301 1 418 232 0 0 chrX 16436606 16436688 -146163242 + LTR32 LTR ERVL 7 88 -383 * 2373 167 19 30 chrX 16436668 16437130 -146162800 + LTR32 LTR ERVL 15 471 0 2359 104 0 0 chrX 16438633 16438942 -146160988 + AluSx SINE Alu 1 309 -3 2487 73 3 0 chrX 16438943 16439243 -146160687 + AluSp SINE Alu 1 301 -12 2300 113 3 0 chrX 16439631 16439972 -146159958 + AluSx SINE Alu 1 342 0 1993 252 121 28 chrX 16440121 16440693 -146159237 - MLT2E LTR ERVL -3 625 1 1656 162 3 46 chrX 16440748 16440760 -146159170 - AluJo SINE Alu 0 501 490 1424 67 0 0 chrX 16440760 16440939 -146158991 - L1MA3 LINE L1 0 6305 6127 1656 162 3 46 chrX 16440939 16441262 -146158668 - AluJo SINE Alu -11 490 1 2015 144 0 3 chrX 16441304 16441617 -146158313 - AluSx SINE Alu 0 312 1 683 61 105 0 chrX 16441622 16441731 -146158199 - L1MA3 LINE L1 -164 6139 6015 2231 112 0 10 chrX 16442532 16442835 -146157095 - AluSx SINE Alu -12 300 1 449 284 24 60 chrX 16442979 16443230 -146156700 + MLT1J LTR MaLR 37 313 -198 764 144 0 8 chrX 16443280 16443398 -146156532 - AluSg/x SINE Alu -4 308 192 1766 104 119 4 chrX 16443473 16443742 -146156188 - AluSq SINE Alu -13 300 1 2364 93 7 7 chrX 16444525 16444835 -146155095 - AluSx SINE Alu -2 310 1 1859 162 3 10 chrX 16444859 16445173 -146154757 - AluJo SINE Alu 0 312 1 1469 245 53 80 chrX 16445703 16445785 -146154145 - L1M4c LINE L1 -3660 3297 3214 1740 176 0 16 chrX 16445785 16446092 -146153838 - AluJb SINE Alu -9 303 2 1469 245 53 80 chrX 16446092 16446351 -146153579 - L1M4c LINE L1 -3743 3214 2949 2388 75 0 10 chrX 16446351 16446644 -146153286 - AluSc SINE Alu -19 290 1 1759 135 87 14 chrX 16446654 16446943 -146152987 - AluSx SINE Alu -2 310 1 1469 245 53 80 chrX 16446943 16447853 -146152077 - L1M4c LINE L1 -4017 2940 2132 2313 108 0 13 chrX 16447853 16448167 -146151763 - AluSx SINE Alu -2 310 1 1469 245 53 80 chrX 16448167 16448271 -146151659 - L1M4c LINE L1 -4825 2132 2027 2165 113 0 16 chrX 16448283 16448592 -146151338 - AluSx SINE Alu -8 304 1 835 152 0 23 chrX 16448597 16448729 -146151201 - FLAM_C SINE Alu -14 129 1 857 182 75 157 chrX 16448729 16448887 -146151043 - L1M4c LINE L1 -4899 2060 1891 2525 71 0 0 chrX 16448887 16449195 -146150735 - AluY SINE Alu -3 308 1 857 182 75 157 chrX 16449195 16449267 -146150663 - L1M4c LINE L1 -5068 1891 1815 246 182 36 0 chrX 16449267 16449322 -146150608 - MLT2B2 LTR ERVL 0 515 459 857 182 75 157 chrX 16449322 16449476 -146150454 - L1M4c LINE L1 -5144 1815 1657 * 3452 139 18 27 chrX 16449471 16450068 -146149862 - L1MC3 LINE L1 0 7785 7194 299 267 11 11 chrX 16450071 16450161 -146149769 - MLT1F1 LTR MaLR -442 125 36 804 147 95 44 chrX 16450162 16450402 -146149528 - L1MC3 LINE L1 -688 7097 6860 2309 106 0 3 chrX 16450402 16450735 -146149195 - AluSx SINE Alu 0 332 1 832 136 0 73 chrX 16450787 16450897 -146149033 - L1MC3 LINE L1 -923 6862 6767 1799 128 14 38 chrX 16450897 16451238 -146148692 - AluJb SINE Alu 0 334 1 832 136 0 73 chrX 16451238 16451303 -146148627 - L1MC3 LINE L1 -1018 6767 6699 301 130 17 2 chrX 16451298 16451362 -146148568 - L1M4c LINE L1 -5180 1679 1612 * 819 226 153 95 chrX 16451362 16451827 -146148103 - L1M4c LINE L1 -6358 501 10 309 330 165 0 chrX 16452735 16452911 -146147019 - MIR SINE MIR 0 262 58 2234 88 3 17 chrX 16453001 16453296 -146146634 - AluSg SINE Alu -19 291 1 2058 116 0 24 chrX 16453893 16454186 -146145744 - AluSx SINE Alu -18 294 9 881 199 5 53 chrX 16454339 16454545 -146145385 - AluJb SINE Alu -26 286 91 29 28 0 0 chrX 16454663 16454699 -146145231 + AT_rich Low_complexity Low_complexity 1 36 0 562 282 19 5 chrX 16455086 16455292 -146144638 - LTR54 LTR ERV1 -9 501 293 445 160 64 80 chrX 16455305 16455430 -146144500 - LTR54 LTR ERV1 -326 184 62 362 384 68 17 chrX 16455659 16455896 -146144034 + L2 LINE L2 2836 3084 -188 191 156 0 0 chrX 16456682 16456714 -146143216 + L2 LINE L2 3274 3305 -8 202 273 0 36 chrX 16456770 16456825 -146143105 - MIR SINE MIR -58 150 98 225 283 61 91 chrX 16456826 16456888 -146143042 + L3 LINE CR1 1351 1410 -167 1582 185 28 3 chrX 16456888 16457175 -146142755 - AluJo SINE Alu -18 294 1 225 283 61 91 chrX 16457175 16457211 -146142719 + L3 LINE CR1 1410 1446 -131 2241 101 0 0 chrX 16457212 16457508 -146142422 + AluSx SINE Alu 3 298 -14 980 213 13 13 chrX 16458010 16458235 -146141695 + MER21B LTR ERV1 81 305 -558 1849 130 116 44 chrX 16458273 16458703 -146141227 + MER4D LTR ERV1 1 461 -442 722 105 0 19 chrX 16458703 16458808 -146141122 - AluSx SINE Alu -22 288 186 1497 92 0 0 chrX 16458835 16459031 -146140899 - AluSx SINE Alu -110 202 7 1614 92 76 62 chrX 16459037 16459341 -146140589 + MER4E LTR ERV1 346 653 -126 771 118 8 8 chrX 16459344 16459463 -146140467 + AluJb SINE Alu 1 119 -193 807 85 20 72 chrX 16459470 16459623 -146140307 + MER4E LTR ERV1 624 768 -11 1182 183 108 115 chrX 16459635 16460034 -146139896 + MER21B LTR ERV1 354 846 -85 235 341 37 0 chrX 16460872 16460954 -146138976 - MIR3 SINE MIR 0 208 124 1098 252 81 14 chrX 16461443 16461888 -146138042 - L1MC/D LINE L1 -2016 5792 5318 518 300 120 64 chrX 16462011 16462964 -146136966 + L2 LINE L2 2292 3310 -3 264 402 53 11 chrX 16462978 16463167 -146136763 - L3 LINE CR1 -1345 232 36 1622 159 31 31 chrX 16463503 16463792 -146136138 - AluJb SINE Alu -23 289 1 2082 121 0 34 chrX 16463812 16464135 -146135795 - AluSx SINE Alu 0 312 1 218 242 194 0 chrX 16465107 16465169 -146134761 - L3 LINE CR1 -11 1566 1493 766 308 133 33 chrX 16465203 16465632 -146134298 + L2 LINE L2 2842 3313 0 2872 163 61 94 chrX 16465664 16466566 -146133364 - MER4D LTR ERV1 -11 892 21 1311 106 0 21 chrX 16466568 16466756 -146133174 - AluSg/x SINE Alu -11 301 118 457 324 158 15 chrX 16466773 16467045 -146132885 - L3 LINE CR1 -209 1368 1058 219 36 0 0 chrX 16467335 16467363 -146132567 + (TTGTG)n Simple_repeat Simple_repeat 2 29 0 180 250 0 0 chrX 16467368 16467416 -146132514 + CT-rich Low_complexity Low_complexity 2 49 0 1162 147 35 100 chrX 16467416 16467675 -146132255 - AluJb SINE Alu -39 273 32 358 174 58 12 chrX 16467880 16467966 -146131964 - MLT1E2 LTR MaLR 0 626 537 421 226 58 70 chrX 16468209 16468354 -146131576 - L1M4 LINE L1 -3235 2911 2769 1840 147 55 3 chrX 16468354 16468647 -146131283 - AluSx SINE Alu -4 308 1 421 226 58 70 chrX 16468647 16468758 -146131172 - L1M4 LINE L1 -3377 2769 2658 2408 58 0 29 chrX 16468934 16469245 -146130685 - AluY SINE Alu -9 302 1 425 358 37 59 chrX 16469317 16469638 -146130292 - L1MEd LINE L1 -5327 792 479 1066 109 25 35 chrX 16469727 16469929 -146130001 - L1MA4 LINE L1 -1 6299 6100 1865 166 0 7 chrX 16470416 16470717 -146129213 - AluSx SINE Alu -13 299 1 2164 132 0 3 chrX 16470739 16471050 -146128880 - AluSq SINE Alu -3 310 1 2316 102 7 0 chrX 16471122 16471425 -146128505 - AluSx SINE Alu -7 305 1 460 325 158 8 chrX 16471670 16471910 -146128020 + L2 LINE L2 2997 3272 0 626 221 115 67 chrX 16472005 16472258 -146127672 - L2 LINE L2 -411 2903 2639 567 263 75 74 chrX 16472490 16472759 -146127171 - L1M4 LINE L1 -1480 4666 4399 1743 196 0 0 chrX 16472759 16473060 -146126870 - AluJb SINE Alu -11 301 1 567 263 75 74 chrX 16473060 16473314 -146126616 - L1M4 LINE L1 -1747 4399 4147 1776 158 0 38 chrX 16473314 16473630 -146126300 - AluJb SINE Alu -8 304 1 567 263 75 74 chrX 16473630 16473683 -146126247 - L1M4 LINE L1 -1999 4147 4096 1306 179 47 47 chrX 16473683 16473980 -146125950 - AluJo SINE Alu -13 299 3 567 263 75 74 chrX 16473980 16474067 -146125863 - L1M4 LINE L1 -2050 4096 4000 293 275 50 17 chrX 16474070 16474190 -146125740 - L1ME LINE L1 -504 5617 5494 2539 33 3 10 chrX 16474226 16474530 -146125400 + AluY SINE Alu 1 302 -9 5354 186 91 38 chrX 16474637 16476446 -146123484 - L1MC3 LINE L1 -1 8039 6108 22 0 0 0 chrX 16476862 16476884 -146123046 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chrX 16477129 16477169 -146122761 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1286 107 56 0 chrX 16477169 16477347 -146122583 - AluSg/x SINE Alu -31 279 92 603 185 67 15 chrX 16477441 16477576 -146122354 + MER104 DNA Tc2 38 179 -1 2087 98 14 0 chrX 16478392 16478668 -146121262 + AluSc SINE Alu 3 282 -27 333 0 0 0 chrX 16478668 16478705 -146121225 + (CA)n Simple_repeat Simple_repeat 2 38 0 407 109 47 0 chrX 16478705 16478769 -146121161 + AluSc SINE Alu 216 282 -27 465 19 0 0 chrX 16478769 16478823 -146121107 + (CA)n Simple_repeat Simple_repeat 2 55 0 968 123 0 20 chrX 16479446 16479592 -146120338 + FLAM_C SINE Alu 1 143 0 219 36 0 0 chrX 16479720 16479748 -146120182 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2147 107 4 0 chrX 16479750 16480031 -146119899 - AluSx SINE Alu -30 282 1 1743 121 153 0 chrX 16480517 16480830 -146119100 - MER46B DNA MER2_type 0 236 1 1780 156 79 24 chrX 16480986 16481314 -146118616 + MER7A DNA MER2_type 3 346 0 35 0 0 0 chrX 16482237 16482272 -146117658 + AT_rich Low_complexity Low_complexity 1 35 0 196 180 66 0 chrX 16482581 16482642 -146117288 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 25 31 0 0 chrX 16482760 16482792 -146117138 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 16483872 16483900 -146116030 + AT_rich Low_complexity Low_complexity 1 28 0 2294 107 0 0 chrX 16484001 16484301 -146115629 + AluSq SINE Alu 1 300 -13 2143 123 7 3 chrX 16484366 16484676 -146115254 - AluSx SINE Alu -1 311 1 468 289 188 15 chrX 16485288 16485485 -146114445 - MIR SINE MIR 0 262 32 339 85 0 0 chrX 16485532 16485579 -146114351 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1880 113 38 11 chrX 16485591 16485857 -146114073 - AluSx SINE Alu -39 273 1 826 106 0 18 chrX 16486130 16486243 -146113687 - FLAM_C SINE Alu -13 130 20 2004 115 10 7 chrX 16486317 16486612 -146113318 - AluSq SINE Alu -17 296 1 1947 81 11 11 chrX 16487326 16487587 -146112343 + AluSx SINE Alu 28 288 -24 21 71 0 0 chrX 16487708 16487750 -146112180 + AT_rich Low_complexity Low_complexity 1 42 0 216 373 69 10 chrX 16487814 16487916 -146112014 - L2 LINE L2 -7 3306 3199 2358 78 13 3 chrX 16487970 16488276 -146111654 - AluSc SINE Alu 0 309 1 844 205 138 0 chrX 16488737 16488932 -146110998 + MER58A DNA MER1_type 3 224 0 402 300 84 26 chrX 16489437 16489627 -146110303 - MIR SINE MIR -3 259 59 4554 170 48 40 chrX 16489663 16490316 -146109614 - L1MB5 LINE L1 -6 6168 5521 186 43 0 0 chrX 16490316 16490339 -146109591 + (TCC)n Simple_repeat Simple_repeat 2 24 0 1855 131 40 7 chrX 16490340 16490615 -146109315 - AluSx SINE Alu -28 284 1 4554 170 48 40 chrX 16490615 16491135 -146108795 - L1MB5 LINE L1 -653 5521 5006 807 104 8 15 chrX 16491135 16491269 -146108661 - L1PB4 LINE L1 -3 6153 6021 4554 170 48 40 chrX 16491269 16491864 -146108066 - L1MB5 LINE L1 -1168 5006 4393 289 109 0 0 chrX 16491865 16491911 -146108019 - Alu SINE Alu -8 293 248 2207 136 0 0 chrX 16491912 16492221 -146107709 - AluSx SINE Alu -3 309 1 328 214 0 127 chrX 16492244 16492370 -146107560 - L1MB5 LINE L1 -1716 4430 4321 2229 103 13 13 chrX 16492370 16492672 -146107258 - AluSx SINE Alu -10 302 1 1683 204 21 3 chrX 16492683 16493060 -146106870 - L1MB4 LINE L1 0 6180 5797 262 205 24 48 chrX 16493169 16493252 -146106678 - L1MB4 LINE L1 -2100 4046 3966 1038 151 26 5 chrX 16493292 16493484 -146106446 - L1M3 LINE L1 -396 5784 5589 1447 203 17 17 chrX 16493485 16493845 -146106085 - L1MB5 LINE L1 -1819 4327 3968 331 303 72 20 chrX 16493889 16494084 -146105846 - L1M4 LINE L1 -6332 210 6 1433 228 35 2 chrX 16494089 16494493 -146105437 - L1MCa LINE L1 -901 5525 5109 1111 176 0 109 chrX 16494493 16494689 -146105241 - AluJo SINE Alu -6 306 143 2011 133 7 3 chrX 16494689 16494975 -146104955 - AluSx SINE Alu -25 287 1 1111 176 0 109 chrX 16494975 16495034 -146104896 - AluJo SINE Alu -169 143 79 6762 227 78 50 chrX 16495034 16495321 -146104609 - L1MCa LINE L1 -1313 5113 4835 2318 96 0 0 chrX 16495321 16495623 -146104307 - AluSx SINE Alu -10 302 1 6762 227 78 50 chrX 16495623 16496356 -146103574 - L1MCa LINE L1 -1591 4835 4124 2519 59 3 0 chrX 16496356 16496659 -146103271 - AluSp SINE Alu -9 304 1 6762 227 78 50 chrX 16496659 16498224 -146101706 - L1MCa LINE L1 -2302 4124 2604 1980 142 0 7 chrX 16498224 16498512 -146101418 - AluJb SINE Alu -26 286 1 6762 227 78 50 chrX 16498512 16499624 -146100306 - L1MCa LINE L1 -3822 2604 1524 2386 64 0 32 chrX 16499624 16499938 -146099992 + AluSc SINE Alu 2 305 -4 6762 227 78 50 chrX 16499938 16501264 -146098666 - L1MCa LINE L1 -4902 1524 91 2823 25 0 0 chrX 16501264 16501582 -146098348 - AluYb8 SINE Alu 0 318 1 6762 227 78 50 chrX 16501582 16501670 -146098260 - L1MCa LINE L1 -6335 91 7 32 95 0 0 chrX 16502605 16502700 -146097230 + AT_rich Low_complexity Low_complexity 1 95 0 254 368 33 20 chrX 16503660 16503812 -146096118 + L2 LINE L2 2852 3005 -267 295 204 258 0 chrX 16503924 16504056 -146095874 + MER104 DNA Tc2 13 178 -2 534 244 57 0 chrX 16504071 16504194 -146095736 + L2 LINE L2 3139 3268 -4 2461 84 3 0 chrX 16506011 16506322 -146093608 - AluSx SINE Alu 0 312 1 700 194 7 7 chrX 16506772 16506911 -146093019 - MER119 DNA MER1_type -216 367 229 2679 211 69 14 chrX 16506913 16508344 -146091586 - L1MD2 LINE L1 -10 6743 5205 * 2837 234 44 18 chrX 16508343 16509307 -146090623 - L1MD2 LINE L1 -2533 4007 3019 4430 188 94 75 chrX 16509337 16509733 -146090197 - L1MD2 LINE L1 -4120 2420 2033 1906 138 0 24 chrX 16509733 16510053 -146089877 - AluJb SINE Alu 0 313 1 4430 188 94 75 chrX 16510053 16510271 -146089659 - L1MD2 LINE L1 -4507 2033 1821 2393 72 0 3 chrX 16510271 16510563 -146089367 - AluSc SINE Alu -18 291 1 4430 188 94 75 chrX 16510563 16511093 -146088837 - L1MD2 LINE L1 -4719 1821 1302 1725 155 40 10 chrX 16511093 16511396 -146088534 - AluJb SINE Alu 0 312 1 4430 188 94 75 chrX 16511396 16511889 -146088041 - L1MD2 LINE L1 -5238 1302 749 735 185 73 15 chrX 16511889 16512094 -146087836 - L1MD2 LINE L1 -6074 466 250 * 937 195 29 24 chrX 16512092 16512338 -146087592 - L1MDb LINE L1 -5307 1236 990 849 248 78 23 chrX 16512778 16513125 -146086805 - L1MDb LINE L1 -6158 382 17 22 56 0 0 chrX 16513194 16513230 -146086700 + AT_rich Low_complexity Low_complexity 1 36 0 253 336 58 29 chrX 16513239 16513343 -146086587 - L2 LINE L2 -33 3239 3133 916 213 20 10 chrX 16513997 16514194 -146085736 - MIR SINE MIR -44 218 20 1886 147 3 28 chrX 16514522 16514842 -146085088 + AluJo SINE Alu 1 312 0 2376 88 3 3 chrX 16515829 16516134 -146083796 - AluSq SINE Alu -4 309 5 223 195 0 0 chrX 16516684 16516725 -146083205 + L2 LINE L2 3262 3302 -11 236 30 30 0 chrX 16516727 16516760 -146083170 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2920 127 44 10 chrX 16517396 16517892 -146082038 - LTR10D LTR ERV1 0 513 1 760 269 170 10 chrX 16520153 16520570 -146079360 - Tigger8 DNA MER2_type -160 506 23 1697 141 11 28 chrX 16521136 16521465 -146078465 - AluJb SINE Alu 0 328 5 2456 75 0 0 chrX 16521548 16521842 -146078088 + AluSg SINE Alu 15 308 -2 192 276 118 70 chrX 16522576 16522848 -146077082 - L2 LINE L2 -673 2641 2357 438 20 0 0 chrX 16523029 16523080 -146076850 + (TG)n Simple_repeat Simple_repeat 2 52 0 1717 96 0 21 chrX 16523080 16523319 -146076611 - AluSx SINE Alu -26 286 53 1754 42 0 5 chrX 16523641 16523857 -146076073 - L1PA5 LINE L1 0 6154 5940 2411 90 0 0 chrX 16523991 16524292 -146075638 - AluSx SINE Alu -11 301 1 616 72 0 0 chrX 16524517 16524600 -146075330 - L1PA7 LINE L1 -1 6153 6071 769 191 121 20 chrX 16524671 16524870 -146075060 - MER20 DNA MER1_type 0 219 1 21 57 0 0 chrX 16525695 16525730 -146074200 + AT_rich Low_complexity Low_complexity 1 35 0 762 274 46 21 chrX 16525958 16526199 -146073731 + MIR SINE MIR 1 247 -15 1758 90 0 0 chrX 16526261 16526483 -146073447 + AluSg/x SINE Alu 85 306 -6 259 61 0 0 chrX 16526493 16526526 -146073404 - U2 snRNA snRNA -155 33 1 1202 168 83 80 chrX 16526730 16527069 -146072861 - MER2 DNA MER2_type -5 340 1 216 0 0 0 chrX 16528776 16528800 -146071130 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2164 90 4 0 chrX 16528804 16529083 -146070847 - AluSg SINE Alu -30 280 1 5897 29 1 0 chrX 16529211 16529899 -146070031 - L1PA3 LINE L1 -2 6153 5465 356 233 41 0 chrX 16530100 16530173 -146069757 - L2 LINE L2 -5 3308 3233 355 275 45 51 chrX 16530327 16530353 -146069577 + HAL1b LINE L1 275 300 -1048 216 0 0 0 chrX 16530353 16530377 -146069553 + (CA)n Simple_repeat Simple_repeat 2 25 0 355 275 45 51 chrX 16530377 16530528 -146069402 + HAL1b LINE L1 300 451 -897 345 316 20 0 chrX 16530669 16530767 -146069163 - MER91B DNA MER1_type -61 129 30 369 320 102 40 chrX 16530783 16531105 -146068825 + HAL1b LINE L1 474 815 -533 362 252 80 20 chrX 16531754 16531905 -146068025 + L1ME4a LINE L1 5503 5662 -459 244 244 142 31 chrX 16532074 16532201 -146067729 + L1ME4a LINE L1 5973 6113 -8 267 79 0 0 chrX 16534103 16534141 -146065789 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chrX 16534416 16534439 -146065491 + AT_rich Low_complexity Low_complexity 1 23 0 502 226 109 54 chrX 16534826 16535065 -146064865 + MER112 DNA MER1_type 8 259 -1 2033 120 0 13 chrX 16535733 16536032 -146063898 - AluJb SINE Alu -17 295 1 2070 141 14 22 chrX 16537095 16537176 -146062754 - MER47A DNA MER2_type -1957 366 286 2079 126 3 14 chrX 16537176 16537469 -146062461 + AluJb SINE Alu 1 290 -22 2070 141 14 22 chrX 16537469 16537755 -146062175 - MER47A DNA MER2_type -2037 286 2 215 278 0 0 chrX 16538221 16538275 -146061655 + CT-rich Low_complexity Low_complexity 1 54 0 1906 146 0 4 chrX 16538290 16538571 -146061359 - AluJo SINE Alu -32 280 1 233 273 11 45 chrX 16540629 16540717 -146059213 - MIR3 SINE MIR -12 196 112 210 281 191 0 chrX 16540914 16541003 -146058927 + MIR SINE MIR 40 145 -117 286 309 0 106 chrX 16541749 16541872 -146058058 - MIR3 SINE MIR -94 114 5 532 288 135 54 chrX 16542325 16542791 -146057139 - L2 LINE L2 -3 3310 2807 812 202 49 9 chrX 16543729 16544014 -146055916 - MER46C DNA MER2_type -12 326 1 22 56 0 0 chrX 16544073 16544109 -146055821 + AT_rich Low_complexity Low_complexity 1 36 0 939 113 0 8 chrX 16545723 16545856 -146054074 + FLAM_C SINE Alu 1 132 -1 24 77 0 0 chrX 16546367 16546419 -146053511 + AT_rich Low_complexity Low_complexity 1 52 0 1068 172 0 0 chrX 16546474 16546637 -146053293 - FAM SINE Alu -12 163 1 24 0 0 0 chrX 16546760 16546784 -146053146 + AT_rich Low_complexity Low_complexity 1 24 0 236 353 0 0 chrX 16546825 16546910 -146053020 - MIR SINE MIR -94 114 30 373 204 97 9 chrX 16547032 16547145 -146052785 - MLT1J LTR MaLR -11 500 378 432 240 158 0 chrX 16547205 16547351 -146052579 - MLT1J LTR MaLR -341 170 2 23 86 0 0 chrX 16547857 16547915 -146052015 + AT_rich Low_complexity Low_complexity 1 58 0 617 224 71 0 chrX 16548016 16548199 -146051731 - Charlie1 DNA MER1_type 0 2761 2566 * 1778 206 84 31 chrX 16548198 16548687 -146051243 - Charlie1a DNA MER1_type -940 515 1 21 0 0 0 chrX 16550288 16550309 -146049621 + AT_rich Low_complexity Low_complexity 1 21 0 734 266 115 63 chrX 16554033 16554555 -146045375 - MLT1H LTR MaLR 0 549 1 207 342 25 0 chrX 16554607 16554686 -146045244 - L2 LINE L2 0 3313 3233 1883 158 0 16 chrX 16554688 16555004 -146044926 + AluSx SINE Alu 1 311 -1 26 30 0 0 chrX 16555444 16555477 -146044453 + AT_rich Low_complexity Low_complexity 1 33 0 2183 123 0 3 chrX 16558209 16558518 -146041412 + AluSx SINE Alu 3 310 -2 7383 40 7 0 chrX 16558719 16559873 -146040057 - L1PA5 LINE L1 -1 6153 4992 568 261 107 81 chrX 16560438 16560945 -146038985 + L2 LINE L2 2758 3299 -14 389 293 157 56 chrX 16561196 16561609 -146038321 + L2 LINE L2 2818 3272 0 195 284 0 40 chrX 16561942 16562016 -146037914 - L2 LINE L2 -212 3060 2990 641 302 67 4 chrX 16562495 16562720 -146037210 + MIR SINE MIR 10 248 -14 374 333 16 31 chrX 16563159 16563288 -146036642 + MIR SINE MIR 19 145 -63 2229 107 0 3 chrX 16564477 16564777 -146035153 + AluSg SINE Alu 1 299 -11 276 331 54 0 chrX 16565931 16566061 -146033869 - MER103 DNA DNA -19 147 11 465 278 77 40 chrX 16566562 16566810 -146033120 - L1ME3A LINE L1 -37 6133 5877 2290 102 13 0 chrX 16567168 16567472 -146032458 - AluSq SINE Alu -5 308 1 21 0 0 0 chrX 16567721 16567742 -146032188 + AT_rich Low_complexity Low_complexity 1 21 0 266 206 28 47 chrX 16567862 16567969 -146031961 + L1ME4a LINE L1 6016 6120 -1 1758 189 0 6 chrX 16569018 16569331 -146030599 - AluJo SINE Alu -1 311 1 1381 161 146 0 chrX 16569420 16569674 -146030256 - AluJb SINE Alu -11 291 1 213 39 0 0 chrX 16570954 16570980 -146028950 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 534 282 83 40 chrX 16571489 16571837 -146028093 - LTR33 LTR ERVL -158 363 1 738 137 0 0 chrX 16575077 16575194 -146024736 + AluSg/x SINE Alu 196 312 0 279 258 0 0 chrX 16575256 16575318 -146024612 + MIR SINE MIR 201 262 0 2166 85 4 0 chrX 16575478 16575749 -146024181 + AluSc SINE Alu 1 272 -37 363 23 0 0 chrX 16575751 16575795 -146024135 + (CA)n Simple_repeat Simple_repeat 1 44 0 248 304 82 70 chrX 16576361 16576519 -146023411 - L2 LINE L2 -681 2633 2474 466 296 17 26 chrX 16576552 16576723 -146023207 - MIR3 SINE MIR -24 184 13 21 36 0 0 chrX 16578108 16578136 -146021794 + AT_rich Low_complexity Low_complexity 1 28 0 1940 149 0 3 chrX 16578691 16578979 -146020951 + AluJo SINE Alu 5 291 -21 204 292 118 50 chrX 16579268 16579429 -146020501 + L2 LINE L2 2564 2735 -579 428 309 42 37 chrX 16579443 16579634 -146020296 - L2 LINE L2 -17 3296 3105 2379 77 0 16 chrX 16580725 16581036 -146018894 + AluY SINE Alu 1 306 -5 25 31 0 0 chrX 16581052 16581084 -146018846 + AT_rich Low_complexity Low_complexity 1 32 0 1836 174 43 0 chrX 16581962 16582261 -146017669 + AluJb SINE Alu 1 312 0 1152 154 0 0 chrX 16582521 16582696 -146017234 + AluJb SINE Alu 133 307 -5 364 336 86 41 chrX 16583150 16583370 -146016560 - MIR SINE MIR -32 230 1 674 292 105 0 chrX 16583953 16584172 -146015758 + MIR SINE MIR 14 255 -7 1677 185 4 0 chrX 16585012 16585293 -146014637 - AluJb SINE Alu -30 282 1 2362 89 3 0 chrX 16585920 16586223 -146013707 + AluSp SINE Alu 1 304 -9 308 312 32 48 chrX 16586564 16586689 -146013241 + L2 LINE L2 3144 3266 -6 2172 138 0 0 chrX 16588263 16588568 -146011362 + AluSx SINE Alu 1 305 -7 787 152 23 15 chrX 16588736 16588868 -146011062 - FLAM_C SINE Alu 0 133 1 1793 142 59 3 chrX 16590319 16590608 -146009322 - AluJb SINE Alu -7 305 1 183 341 44 11 chrX 16590712 16590803 -146009127 + MIR3 SINE MIR 115 208 0 275 325 90 48 chrX 16592208 16592374 -146007556 - MIR3 SINE MIR -12 196 24 1909 149 0 10 chrX 16595643 16595945 -146003985 - AluJb SINE Alu -13 299 1 590 71 12 0 chrX 16596238 16596322 -146003608 + (TC)n Simple_repeat Simple_repeat 1 85 0 1203 183 5 9 chrX 16596329 16596542 -146003388 - AluJo SINE Alu -16 296 85 207 69 0 0 chrX 16597360 16597389 -146002541 + (A)n Simple_repeat Simple_repeat 1 29 0 573 314 43 5 chrX 16597464 16597652 -146002278 + MLT1J LTR MaLR 67 261 -250 23 33 0 0 chrX 16599015 16599045 -146000885 + AT_rich Low_complexity Low_complexity 1 30 0 1255 150 14 27 chrX 16601460 16601680 -145998250 + MER20 DNA MER1_type 3 219 0 816 236 6 0 chrX 16605380 16605558 -145994372 - MER58A DNA MER1_type -1 223 45 668 264 116 28 chrX 16605863 16605913 -145994017 - MIR SINE MIR -10 252 208 423 0 0 0 chrX 16605913 16605960 -145993970 + (TTA)n Simple_repeat Simple_repeat 2 48 0 668 264 116 28 chrX 16605960 16606125 -145993805 - MIR SINE MIR -54 208 18 2050 115 0 37 chrX 16606552 16606695 -145993235 + AluSx SINE Alu 1 148 -156 2394 78 17 0 chrX 16606695 16606989 -145992941 + AluSg SINE Alu 9 307 -3 2050 115 0 37 chrX 16606989 16607160 -145992770 + AluSx SINE Alu 148 304 0 698 222 58 12 chrX 16607170 16607341 -145992589 + MIR SINE MIR 34 212 -50 202 286 104 13 chrX 16607471 16607548 -145992382 - MIR SINE MIR -21 241 158 4071 161 74 19 chrX 16608253 16609759 -145990171 + L1MB8 LINE L1 4592 6178 0 910 132 201 0 chrX 16611923 16612097 -145987833 - MER3 DNA MER1_type 0 209 1 2218 109 0 16 chrX 16612334 16612646 -145987284 + AluSx SINE Alu 1 307 -5 21 0 0 0 chrX 16613404 16613425 -145986505 + AT_rich Low_complexity Low_complexity 1 21 0 840 304 140 28 chrX 16614874 16615331 -145984599 + L2 LINE L2 2226 2631 -641 1365 276 50 42 chrX 16615331 16615729 -145984201 + MLT1J LTR MaLR 4 408 -103 2291 103 0 10 chrX 16615729 16616031 -145983899 - AluSx SINE Alu -13 299 1 1365 276 50 42 chrX 16616031 16616135 -145983795 + MLT1J LTR MaLR 408 510 -1 840 304 140 28 chrX 16616135 16616485 -145983445 + L2 LINE L2 2631 3132 -140 1643 93 5 5 chrX 16616496 16616710 -145983220 - AluSg/x SINE Alu -15 297 84 769 109 18 0 chrX 16617632 16617742 -145982188 + AluSg/x SINE Alu 137 248 -64 450 251 122 63 chrX 16617771 16617814 -145982116 + MLT1J LTR MaLR 6 45 -466 1942 157 7 3 chrX 16617814 16618119 -145981811 - AluJb SINE Alu -6 306 1 450 251 122 63 chrX 16618119 16618362 -145981568 + MLT1J LTR MaLR 45 309 -202 1567 121 191 4 chrX 16618384 16618641 -145981289 + AluJo SINE Alu 1 305 -7 690 156 8 0 chrX 16618813 16618935 -145980995 - FRAM SINE Alu -13 163 41 558 227 133 0 chrX 16620188 16620338 -145979592 - MER5B DNA MER1_type 0 178 9 513 207 30 67 chrX 16620376 16620540 -145979390 + MIR SINE MIR 70 227 -35 405 0 0 0 chrX 16620797 16620842 -145979088 + (TG)n Simple_repeat Simple_repeat 1 45 0 341 94 0 16 chrX 16620842 16620906 -145979024 + (GA)n Simple_repeat Simple_repeat 2 64 0 2345 96 0 0 chrX 16621963 16622256 -145977674 + AluSx SINE Alu 1 293 -19 2358 97 7 3 chrX 16623263 16623573 -145976357 + AluSx SINE Alu 1 311 -1 1124 174 60 32 chrX 16623715 16623933 -145975997 - AluJb SINE Alu -3 309 86 202 363 157 0 chrX 16624082 16624184 -145975746 + L2 LINE L2 3147 3264 -8 1065 213 37 0 chrX 16624820 16625036 -145974894 + MER58A DNA MER1_type 1 224 0 438 275 47 21 chrX 16625044 16625237 -145974693 - MLT1I LTR MaLR -13 396 199 295 254 205 16 chrX 16625388 16625510 -145974420 - MIR SINE MIR -98 164 20 2104 151 3 0 chrX 16625557 16625868 -145974062 - AluJb SINE Alu 0 312 1 233 214 71 0 chrX 16626407 16626463 -145973467 + MER58 DNA MER1_type 199 258 -83 2404 105 0 7 chrX 16626794 16627099 -145972831 - AluSx SINE Alu -9 303 1 2194 112 7 0 chrX 16627466 16627769 -145972161 + AluSx SINE Alu 1 305 -7 328 239 78 55 chrX 16627779 16627997 -145971933 - L1ME4a LINE L1 -28 6093 5871 2452 97 0 3 chrX 16628022 16628333 -145971597 - AluSq SINE Alu -3 310 1 345 24 0 0 chrX 16628353 16628395 -145971535 + (CAT)n Simple_repeat Simple_repeat 2 43 0 952 192 9 55 chrX 16628704 16628768 -145971162 - MER3 DNA MER1_type 0 209 144 2085 114 31 3 chrX 16628768 16629057 -145970873 + AluSx SINE Alu 1 297 -15 952 192 9 55 chrX 16629057 16629211 -145970719 - MER3 DNA MER1_type -65 144 1 1317 224 133 37 chrX 16629222 16629810 -145970120 + MER39 LTR ERV1 1 707 0 1743 94 31 0 chrX 16629861 16630085 -145969845 - AluSq SINE Alu -82 231 1 888 156 58 0 chrX 16630668 16630822 -145969108 + MLT1A1 LTR MaLR 1 163 -202 2989 155 49 40 chrX 16630824 16631623 -145968307 - LTR1 LTR ERV1 0 785 22 1183 155 33 0 chrX 16631622 16631828 -145968102 + MLT1A1 LTR MaLR 166 365 0 * 3218 55 19 17 chrX 16631887 16632206 -145967724 - L1PA5 LINE L1 -8 6146 5824 2669 47 0 0 chrX 16632206 16632503 -145967427 - AluY SINE Alu -14 297 1 3218 55 19 17 chrX 16632503 16632600 -145967330 - L1PA5 LINE L1 -330 5824 5729 2437 82 10 0 chrX 16632609 16632914 -145967016 - AluSp SINE Alu -5 308 1 2042 123 13 19 chrX 16632914 16633222 -145966708 - AluJo SINE Alu -5 307 1 230 324 29 20 chrX 16633306 16633408 -145966522 + L2 LINE L2 2037 2139 -1175 1439 264 32 16 chrX 16633484 16633920 -145966010 + L1ME3A LINE L1 5495 5937 -233 2290 103 0 3 chrX 16633922 16634223 -145965707 + AluSx SINE Alu 1 300 -12 1912 132 0 11 chrX 16634263 16634594 -145965336 - AluJo SINE Alu 0 328 1 1865 152 55 0 chrX 16635164 16635286 -145964644 + AluJo SINE Alu 1 115 -197 237 65 0 0 chrX 16635286 16635317 -145964613 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1865 152 55 0 chrX 16635317 16635484 -145964446 + AluJo SINE Alu 115 306 -6 1556 234 109 59 chrX 16635603 16636620 -145963310 - L2 LINE L2 0 3313 2247 2169 100 3 7 chrX 16636841 16637140 -145962790 + AluSx SINE Alu 2 299 -13 307 51 0 0 chrX 16637590 16637629 -145962301 - MADE1 DNA Mariner -41 39 1 1346 183 79 12 chrX 16638255 16638583 -145961347 + L1MB7 LINE L1 5835 6184 0 2436 71 14 0 chrX 16638785 16639081 -145960849 + AluSp SINE Alu 1 300 -13 2111 119 3 7 chrX 16639800 16640103 -145959827 - AluSx SINE Alu -10 302 1 1159 92 0 7 chrX 16640535 16640688 -145959242 + AluJb SINE Alu 84 235 -77 502 286 0 8 chrX 16641136 16641269 -145958661 - MER94 DNA DNA 0 134 3 23 0 0 0 chrX 16641486 16641509 -145958421 + AT_rich Low_complexity Low_complexity 1 23 0 2512 83 0 0 chrX 16641874 16642186 -145957744 - AluSp SINE Alu -1 312 1 426 222 0 0 chrX 16642444 16642534 -145957396 + L1ME LINE L1 5689 5778 -343 840 244 48 18 chrX 16642541 16642770 -145957160 + MIR SINE MIR 3 238 -24 847 83 30 0 chrX 16642807 16642939 -145956991 + L1MB2 LINE L1 5995 6130 -41 2418 91 0 0 chrX 16642939 16643236 -145956694 + AluSx SINE Alu 1 297 -15 2548 56 0 0 chrX 16643258 16643561 -145956369 + AluY SINE Alu 1 303 -8 187 255 64 0 chrX 16643842 16643889 -145956041 - L2 LINE L2 -1 3312 3263 411 211 0 0 chrX 16644485 16644556 -145955374 - tRNA-Val-GTG tRNA tRNA -3 73 3 28 0 0 0 chrX 16644818 16644846 -145955084 + GC_rich Low_complexity Low_complexity 1 28 0 539 188 45 0 chrX 16645241 16645353 -145954577 - MER45A DNA AcHobo -5 173 57 424 290 99 0 chrX 16645730 16645861 -145954069 + MIR3 SINE MIR 43 186 -22 2297 96 7 7 chrX 16646611 16646914 -145953016 - AluSx SINE Alu -9 303 1 1056 254 188 10 chrX 16646916 16647310 -145952620 + L2 LINE L2 1013 1476 -1838 676 137 144 52 chrX 16647322 16647475 -145952455 - MER20 DNA MER1_type -31 188 22 391 226 32 0 chrX 16647485 16647578 -145952352 + MER20 DNA MER1_type 43 138 -81 871 140 13 25 chrX 16647578 16647724 -145952206 + AluJb SINE Alu 157 302 -10 2039 128 0 19 chrX 16647724 16648037 -145951893 + AluJb SINE Alu 1 307 -5 3092 281 100 27 chrX 16648048 16648656 -145951274 + L2 LINE L2 1714 2277 -1036 1993 141 7 14 chrX 16648656 16648953 -145950977 - AluSx SINE Alu -17 295 1 3092 281 100 27 chrX 16648953 16649384 -145950546 + L2 LINE L2 2277 2675 -638 1991 156 7 3 chrX 16649384 16649685 -145950245 + AluSx SINE Alu 1 302 -10 3092 281 100 27 chrX 16649685 16649780 -145950150 + L2 LINE L2 2675 2762 -551 252 0 0 0 chrX 16649780 16649808 -145950122 + (CTG)n Simple_repeat Simple_repeat 2 29 0 3092 281 100 27 chrX 16649808 16649993 -145949937 + L2 LINE L2 2762 3133 -180 2288 92 0 38 chrX 16649996 16650195 -145949735 - AluSc SINE Alu -4 305 121 4621 33 2 0 chrX 16650195 16650735 -145949195 - L1PA4 LINE L1 -3 6152 5612 2288 92 0 38 chrX 16650735 16650852 -145949078 - AluSc SINE Alu -188 121 1 527 210 38 57 chrX 16650867 16651024 -145948906 + L2 LINE L2 3151 3304 -9 231 264 34 95 chrX 16651045 16651193 -145948737 + MLT1K LTR MaLR 223 361 -227 788 281 97 15 chrX 16651232 16651573 -145948357 + MLT1I LTR MaLR 19 387 -22 1325 288 101 15 chrX 16651604 16652069 -145947861 - LTR67 LTR ERVL -51 506 2 357 222 120 34 chrX 16652151 16652268 -145947662 + MLT1K LTR MaLR 454 580 -8 2387 90 27 33 chrX 16652416 16652782 -145947148 - THE1B LTR MaLR 0 364 1 815 231 91 12 chrX 16652984 16653226 -145946704 - MIR SINE MIR 0 262 2 2235 109 0 7 chrX 16654199 16654501 -145945429 - AluSx SINE Alu -11 301 2 2606 58 0 0 chrX 16654980 16655288 -145944642 + AluY SINE Alu 2 309 -2 320 294 61 66 chrX 16656076 16656273 -145943657 - MLT1K LTR MaLR -355 233 38 233 111 167 19 chrX 16656323 16656377 -145943553 - MIR SINE MIR 0 262 201 743 257 54 84 chrX 16656379 16656908 -145943022 - MLT1J LTR MaLR 0 511 1 678 250 12 12 chrX 16656911 16657083 -145942847 - MIR SINE MIR -62 200 29 2407 104 0 0 chrX 16657255 16657564 -145942366 - AluSx SINE Alu -3 309 1 387 274 15 30 chrX 16657564 16657699 -145942231 - MIR SINE MIR -114 148 16 2176 139 74 72 chrX 16658308 16658781 -145941149 - MER4B LTR ERV1 -136 474 1 1740 112 82 63 chrX 16658800 16659103 -145940827 + AluJb SINE Alu 1 309 -3 315 212 62 62 chrX 16659121 16659267 -145940663 - MER5A DNA MER1_type 0 189 44 * 635 225 6 38 chrX 16659139 16659299 -145940631 + MER5A DNA MER1_type 35 189 0 630 195 19 32 chrX 16659633 16659787 -145940143 + L2 LINE L2 3158 3309 -4 2277 92 6 48 chrX 16659934 16660250 -145939680 - AluSx SINE Alu -9 303 1 280 231 15 0 chrX 16660888 16660953 -145938977 + MIR SINE MIR 85 150 -58 300 351 50 29 chrX 16661472 16661848 -145938082 + L2 LINE L2 2007 2390 -924 562 242 8 8 chrX 16661907 16662027 -145937903 + L2 LINE L2 3151 3270 -2 425 322 57 29 chrX 16662018 16662263 -145937667 + L2 LINE L2 2408 2659 -655 * 668 249 35 6 chrX 16662414 16662587 -145937343 + MER104 DNA Tc2 1 178 -2 707 252 62 41 chrX 16662592 16662834 -145937096 + MER102a DNA MER1_type 84 330 0 277 59 0 0 chrX 16663086 16663120 -145936810 - HSMAR1 DNA Mariner -1253 34 1 2248 110 0 3 chrX 16663135 16663443 -145936487 - AluSq SINE Alu -6 307 1 2599 203 81 39 chrX 16663443 16664044 -145935886 - L1ME1 LINE L1 -56 6110 5477 1591 182 56 0 chrX 16664044 16664313 -145935617 + AluJb SINE Alu 1 284 -28 2599 203 81 39 chrX 16664313 16664381 -145935549 - L1ME1 LINE L1 -689 5477 5413 275 250 19 92 chrX 16664467 16664510 -145935420 - L1MDb LINE L1 -5923 473 428 2122 229 57 31 chrX 16664510 16665086 -145934844 - MLT1E LTR MaLR -2 591 1 275 250 19 92 chrX 16665086 16665197 -145934733 - L1MDb LINE L1 -5968 428 11 1806 155 10 10 chrX 16665731 16666028 -145933902 - AluJo SINE Alu -15 297 1 281 223 96 25 chrX 16666034 16666191 -145933739 - Charlie7 DNA MER1_type -12 2600 2433 * 311 220 40 40 chrX 16666178 16666278 -145933652 - Charlie7 DNA MER1_type -2511 101 2 460 208 69 8 chrX 16666730 16666860 -145933070 - LTR16C LTR ERVL 0 491 354 242 336 25 0 chrX 16667037 16667159 -145932771 + L2 LINE L2 2966 3090 -182 192 309 0 0 chrX 16667219 16667274 -145932656 - MIR SINE MIR -12 250 196 681 247 128 17 chrX 16667520 16667755 -145932175 + MIR SINE MIR 2 262 0 1999 132 24 0 chrX 16668082 16668370 -145931560 + AluSx SINE Alu 1 295 -17 184 256 0 64 chrX 16668494 16668572 -145931358 - L2 LINE L2 -182 3090 3018 408 20 0 0 chrX 16669816 16669865 -145930065 + (TG)n Simple_repeat Simple_repeat 1 49 0 385 293 99 26 chrX 16670576 16670767 -145929163 + MIR SINE MIR 55 259 -3 260 277 48 0 chrX 16671025 16671108 -145928822 - MIR SINE MIR -72 190 104 526 178 153 17 chrX 16671232 16671350 -145928580 - MER103 DNA DNA -19 147 14 27 29 0 0 chrX 16672869 16672903 -145927027 + AT_rich Low_complexity Low_complexity 1 34 0 229 297 27 0 chrX 16673134 16673208 -145926722 - L2 LINE L2 0 3272 3197 2052 145 0 7 chrX 16673497 16673801 -145926129 - AluJb SINE Alu -10 302 1 550 236 43 7 chrX 16674285 16674425 -145925505 + MER5B DNA MER1_type 5 149 -29 399 224 61 0 chrX 16674411 16674509 -145925421 - MER5B DNA MER1_type -72 106 3 * 187 313 232 0 chrX 16674513 16674612 -145925318 + MIR3 SINE MIR 82 203 -5 202 127 0 73 chrX 16674635 16674690 -145925240 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 521 265 8 96 chrX 16674810 16675007 -145924923 + L3 LINE CR1 518 688 -889 2091 134 0 3 chrX 16675007 16675306 -145924624 + AluJb SINE Alu 1 298 -14 521 265 8 96 chrX 16675306 16675368 -145924562 + L3 LINE CR1 688 754 -823 685 141 8 2 chrX 16675561 16675817 -145924113 + AluJ SINE Alu 1 306 -6 2215 116 0 3 chrX 16676038 16676341 -145923589 + AluSx SINE Alu 1 302 -10 2606 68 0 0 chrX 16676394 16676702 -145923228 - AluSg SINE Alu -2 308 1 4674 161 81 11 chrX 16678673 16679067 -145920863 - L1MB5 LINE L1 -8 6166 5801 2478 78 7 0 chrX 16679067 16679373 -145920557 - AluSx SINE Alu -4 308 1 4674 161 81 11 chrX 16679373 16680042 -145919888 - L1MB5 LINE L1 -373 5801 5028 3286 95 18 31 chrX 16680041 16680556 -145919374 + L1PB4 LINE L1 5282 5789 -367 * 227 152 0 0 chrX 16680575 16680621 -145919309 + L1MC4 LINE L1 6658 6703 -1339 228 216 0 0 chrX 16680624 16680675 -145919255 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2450 96 34 8 chrX 16680676 16681030 -145918900 + L1PB4 LINE L1 5782 6144 -12 7233 188 52 21 chrX 16681047 16681330 -145918600 - L1MB5 LINE L1 -1107 5039 4766 2382 84 3 3 chrX 16681330 16681627 -145918303 - AluSg SINE Alu -13 297 1 7233 188 52 21 chrX 16681627 16683000 -145916930 - L1MB5 LINE L1 -1380 4766 3331 254 231 0 0 chrX 16683025 16683077 -145916853 - MER66A LTR ERV1 -140 338 287 289 187 130 32 chrX 16683238 16683361 -145916569 - L1ME4a LINE L1 -43 6078 5944 526 276 93 29 chrX 16683363 16683674 -145916256 - L1ME4a LINE L1 -205 5916 5586 331 327 42 65 chrX 16683675 16683838 -145916092 - MIR SINE MIR 0 262 106 2363 97 0 3 chrX 16683838 16684146 -145915784 - AluSg SINE Alu -3 307 1 331 327 42 65 chrX 16684146 16684245 -145915685 - MIR SINE MIR -156 106 6 288 237 161 8 chrX 16684359 16684477 -145915453 - MIR SINE MIR -72 190 55 826 158 38 32 chrX 16684667 16684825 -145915105 + FRAM SINE Alu 1 159 -7 2240 116 0 7 chrX 16684825 16685119 -145914811 + AluSx SINE Alu 1 292 -20 353 228 152 35 chrX 16685222 16685393 -145914537 - MIR SINE MIR -70 192 2 2516 63 0 0 chrX 16685827 16686130 -145913800 + AluY SINE Alu 2 304 -7 186 133 0 0 chrX 16686627 16686657 -145913273 + (T)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chrX 16686663 16686684 -145913246 + AT_rich Low_complexity Low_complexity 1 21 0 226 164 55 0 chrX 16686726 16686781 -145913149 - L1MC4 LINE L1 -6 8036 7979 602 236 31 15 chrX 16686789 16686984 -145912946 - L1MC4 LINE L1 -156 7886 7689 443 306 183 4 chrX 16686984 16687477 -145912453 + L2 LINE L2 1679 2259 -1055 1858 135 3 60 chrX 16687864 16688183 -145911747 + AluJo SINE Alu 1 301 -11 2246 128 0 0 chrX 16688915 16689221 -145910709 - AluJb SINE Alu -6 306 1 1794 198 112 21 chrX 16689326 16689801 -145910129 + L1MC4 LINE L1 7120 7637 -405 180 0 0 0 chrX 16689810 16689830 -145910100 + (GA)n Simple_repeat Simple_repeat 1 20 0 2437 85 0 25 chrX 16689884 16690201 -145909729 + AluSx SINE Alu 1 309 -3 254 373 42 0 chrX 16690332 16690544 -145909386 + L2 LINE L2 651 871 -2443 442 141 0 0 chrX 16690614 16690685 -145909245 - L1PB4 LINE L1 -8 6148 6078 339 316 10 0 chrX 16691111 16691240 -145908690 - MIR3 SINE MIR -25 183 53 971 196 105 18 chrX 16692187 16692463 -145907467 - L2 LINE L2 -1 3312 3013 2253 94 0 0 chrX 16692563 16692849 -145907081 - AluSx SINE Alu -16 296 11 267 247 62 0 chrX 16692966 16693047 -145906883 - MIR SINE MIR -12 250 165 219 36 0 0 chrX 16693100 16693128 -145906802 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 346 238 127 28 chrX 16693147 16693328 -145906602 - L2 LINE L2 -42 3271 3073 2216 105 0 26 chrX 16693358 16693662 -145906268 - AluSx SINE Alu -16 296 1 435 284 62 82 chrX 16693700 16693943 -145905987 + MIR SINE MIR 5 242 -20 195 162 0 0 chrX 16694185 16694222 -145905708 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 1229 187 189 6 chrX 16694750 16695280 -145904650 - LTR50 LTR ERVL -3 792 3 2106 97 7 0 chrX 16695648 16695970 -145903960 + AluSg SINE Alu 1 324 0 228 261 202 22 chrX 16696043 16696143 -145903787 + MIR SINE MIR 37 153 -62 2174 125 0 10 chrX 16696233 16696536 -145903394 - AluSx SINE Alu -12 300 1 249 275 38 0 chrX 16696565 16696645 -145903285 - MIR3 SINE MIR -17 191 109 337 224 0 78 chrX 16696649 16696765 -145903165 + MIR SINE MIR 6 112 -150 3298 111 75 28 chrX 16697026 16697556 -145902374 - MER21A LTR ERV1 0 931 377 718 130 298 0 chrX 16697562 16697723 -145902207 - MER21A LTR ERV1 -667 264 56 366 42 0 0 chrX 16697731 16697779 -145902151 + (TC)n Simple_repeat Simple_repeat 2 49 0 2332 101 39 31 chrX 16697791 16698148 -145901782 - THE1B LTR MaLR 0 364 5 281 287 0 11 chrX 16698679 16698773 -145901157 - MIR SINE MIR -12 250 158 252 233 44 56 chrX 16699281 16699371 -145900559 - L1ME LINE L1 -482 5688 5600 746 258 0 0 chrX 16699399 16699558 -145900372 - MIR SINE MIR -98 164 6 2351 110 0 0 chrX 16700288 16700589 -145899341 - AluSq SINE Alu -12 301 1 1832 118 10 7 chrX 16701173 16701461 -145898469 - L1MB8 LINE L1 -11 6167 5879 1366 101 0 3 chrX 16701461 16701689 -145898241 - AluSc SINE Alu -11 298 1 2872 120 19 30 chrX 16701691 16702159 -145897771 - L1MB8 LINE L1 -298 5886 5424 2257 116 0 7 chrX 16702496 16702797 -145897133 + AluSq SINE Alu 1 299 -14 1463 239 65 42 chrX 16702825 16703272 -145896658 - LTR16A1 LTR ERVL 0 457 1 42465 61 4 2 chrX 16703706 16709834 -145890096 - L1PA5 LINE L1 -2 6152 11 2166 115 0 3 chrX 16709988 16710283 -145889647 - AluSg SINE Alu -16 294 1 22 0 0 0 chrX 16710370 16710392 -145889538 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrX 16710491 16710513 -145889417 + (T)n Simple_repeat Simple_repeat 1 22 0 282 288 34 55 chrX 16710866 16711012 -145888918 - MER5B DNA MER1_type -9 169 27 1575 189 95 78 chrX 16711069 16711352 -145888578 - L1ME3A LINE L1 -5 6165 5867 1947 128 19 44 chrX 16711352 16711672 -145888258 - AluSx SINE Alu 0 312 1 1575 189 95 78 chrX 16711672 16711902 -145888028 - L1ME3A LINE L1 -303 5867 5643 1078 267 49 72 chrX 16711912 16712151 -145887779 - MLT1H LTR MaLR -7 542 299 2113 125 35 0 chrX 16712151 16712440 -145887490 + AluSx SINE Alu 1 299 -13 1078 267 49 72 chrX 16712440 16712755 -145887175 - MLT1H LTR MaLR -250 299 1 916 246 41 92 chrX 16712757 16713015 -145886915 - L1ME3A LINE L1 -523 5641 5408 2411 94 3 0 chrX 16713015 16713323 -145886607 - AluSx SINE Alu -3 309 1 916 246 41 92 chrX 16713323 16713455 -145886475 - L1ME3A LINE L1 -756 5408 5271 2160 105 3 10 chrX 16713459 16713765 -145886165 - AluSx SINE Alu -8 304 1 247 294 24 8 chrX 16714214 16714340 -145885590 - L1ME3A LINE L1 -1729 4417 4290 649 295 58 0 chrX 16714369 16714559 -145885371 - MIR SINE MIR -11 251 51 37 23 0 0 chrX 16714574 16714618 -145885312 + AT_rich Low_complexity Low_complexity 1 44 0 359 69 75 52 chrX 16714623 16714797 -145885133 + (TA)n Simple_repeat Simple_repeat 1 178 0 1568 138 24 12 chrX 16714797 16715043 -145884887 - AluJb SINE Alu -21 291 43 517 295 122 25 chrX 16715063 16715416 -145884514 - L1ME3A LINE L1 -1871 4275 3889 711 255 162 10 chrX 16716357 16716561 -145883369 + MIR SINE MIR 2 236 -26 1518 104 24 9 chrX 16717052 16717263 -145882667 - AluJb SINE Alu -13 299 86 1539 269 72 35 chrX 16718088 16718600 -145881330 - MLT1H LTR MaLR -16 533 3 199 246 29 58 chrX 16719232 16719301 -145880629 + L2 LINE L2 3239 3305 -8 189 0 0 0 chrX 16719322 16719343 -145880587 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 11267 190 55 34 chrX 16719737 16721072 -145878858 - L1MB7 LINE L1 -16 6666 5360 2260 119 0 0 chrX 16721072 16721375 -145878555 + AluSx SINE Alu 1 303 -9 11267 190 55 34 chrX 16721375 16721938 -145877992 - L1MB7 LINE L1 -1322 5360 4810 264 59 0 0 chrX 16721938 16721972 -145877958 + (TG)n Simple_repeat Simple_repeat 1 34 0 11267 190 55 34 chrX 16721972 16723754 -145876176 - L1MB7 LINE L1 -1872 4810 708 440 268 37 12 chrX 16723761 16723847 -145876083 - L1MB7 LINE L1 -6374 168 86 180 0 0 0 chrX 16723847 16723867 -145876063 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 440 268 37 12 chrX 16723867 16723944 -145875986 - L1MB7 LINE L1 -6456 86 1 1915 161 3 13 chrX 16724165 16724475 -145875455 - AluJb SINE Alu -5 307 1 237 148 0 37 chrX 16724599 16724653 -145875277 + L1MCc LINE L1 1417 1468 -4955 1947 176 21 20 chrX 16724792 16724859 -145875071 - L1MB7 LINE L1 0 6183 6118 2219 93 0 0 chrX 16724859 16725139 -145874791 + AluSx SINE Alu 1 280 -32 1947 176 21 20 chrX 16725139 16725512 -145874418 - L1MB7 LINE L1 -65 6118 5768 2396 89 0 0 chrX 16725762 16726054 -145873876 - AluSx SINE Alu -20 292 1 847 137 0 0 chrX 16726502 16726619 -145873311 + FLAM_C SINE Alu 1 117 -26 730 168 0 0 chrX 16726643 16726756 -145873174 - MER33 DNA MER1_type -211 113 1 252 229 0 49 chrX 16726994 16727055 -145872875 - L2 LINE L2 0 3272 3215 229 283 174 0 chrX 16728479 16728571 -145871359 - MIR3 SINE MIR -1 207 100 25 0 0 0 chrX 16728867 16728892 -145871038 + AT_rich Low_complexity Low_complexity 1 25 0 2264 93 0 3 chrX 16729572 16729861 -145870069 - AluSx SINE Alu -24 288 1 378 290 32 24 chrX 16730029 16730153 -145869777 - L2 LINE L2 -11 3261 3137 1070 161 0 23 chrX 16730176 16730350 -145869580 - AluJb SINE Alu -6 306 137 2231 122 0 3 chrX 16730352 16730655 -145869275 - AluSx SINE Alu -10 302 1 702 249 49 16 chrX 16730683 16730868 -145869062 + MIR SINE MIR 49 239 -23 3251 63 2 0 chrX 16731998 16732391 -145867539 - MER41A LTR ERV1 0 554 161 277 30 0 0 chrX 16732391 16732424 -145867506 - MADE1 DNA Mariner 0 80 48 5805 52 1 0 chrX 16732454 16733113 -145866817 - PABL_A LTR ERV1 0 660 1 25 0 0 0 chrX 16733269 16733294 -145866636 + AT_rich Low_complexity Low_complexity 1 25 0 688 249 8 51 chrX 16734945 16735182 -145864748 + L1MA9 LINE L1 6061 6287 -25 2350 112 0 3 chrX 16735356 16735670 -145864260 + AluSq SINE Alu 1 313 0 1962 122 7 18 chrX 16736341 16736653 -145863277 + AluSq SINE Alu 1 309 0 2250 102 3 0 chrX 16736840 16737135 -145862795 + AluSg SINE Alu 1 296 -14 539 284 72 88 chrX 16738235 16738485 -145861445 - L2 LINE L2 -5 3267 3022 659 278 50 68 chrX 16739890 16740228 -145859702 - MARNA DNA Mariner -23 563 232 295 295 0 0 chrX 16740414 16740507 -145859423 - L1P LINE L1 -2466 3680 3588 191 279 0 0 chrX 16740546 16740589 -145859341 + MER5A DNA MER1_type 144 186 -3 2387 116 88 66 chrX 16741197 16741407 -145858523 - Tigger2a DNA MER2_type -2276 432 228 1719 127 0 108 chrX 16741407 16741723 -145858207 + AluSx SINE Alu 1 282 -30 2387 116 88 66 chrX 16741723 16741935 -145857995 - Tigger2a DNA MER2_type -2480 228 1 1358 26 0 0 chrX 16742038 16742194 -145857736 - L1P LINE L1 -2456 3690 3535 2891 207 28 8 chrX 16742194 16742730 -145857200 - MLT1F1 LTR MaLR -13 554 8 487 286 118 13 chrX 16742842 16743223 -145856707 - L1MEc LINE L1 -3709 2523 2116 22 0 0 0 chrX 16743574 16743596 -145856334 + AT_rich Low_complexity Low_complexity 1 22 0 2523 78 3 0 chrX 16743654 16743963 -145855967 - AluSp SINE Alu -3 310 1 480 270 70 0 chrX 16744041 16744156 -145855774 + L2 LINE L2 3180 3302 -11 362 326 129 13 chrX 16744235 16744683 -145855247 - HAL1 LINE L1 -854 1653 1154 2342 93 0 22 chrX 16744786 16745099 -145854831 - AluSx SINE Alu -6 306 1 336 24 0 0 chrX 16745784 16745825 -145854105 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 1678 164 3 24 chrX 16745825 16746109 -145853821 - AluJb SINE Alu -30 282 3 2322 97 3 0 chrX 16746213 16746513 -145853417 + AluSp SINE Alu 1 301 -12 492 280 24 15 chrX 16746582 16746750 -145853180 - MIR SINE MIR -42 220 55 1606 78 0 45 chrX 16747078 16747321 -145852609 - AluY SINE Alu 0 311 80 2079 141 3 0 chrX 16747321 16747618 -145852312 - AluSx SINE Alu -12 300 2 271 361 118 41 chrX 16749692 16750058 -145849872 - L2 LINE L2 -68 3204 2811 1084 295 117 52 chrX 16750105 16750347 -145849583 - L2 LINE L2 -584 2730 2505 2447 60 0 7 chrX 16750347 16750645 -145849285 + AluY SINE Alu 1 296 -15 1084 295 117 52 chrX 16750645 16751188 -145848742 - L2 LINE L2 -809 2505 1894 238 270 14 68 chrX 16751681 16751755 -145848175 + L2 LINE L2 3116 3185 -87 546 269 12 25 chrX 16752245 16752405 -145847525 - MER74A LTR ERVL -13 545 388 2473 80 3 0 chrX 16752405 16752707 -145847223 + AluSx SINE Alu 1 303 -9 1443 139 126 47 chrX 16752736 16753010 -145846920 - MER74A LTR ERVL -233 325 24 2313 96 7 0 chrX 16753010 16753312 -145846618 + AluSx SINE Alu 1 304 -8 1443 139 126 47 chrX 16753312 16753338 -145846592 - MER74A LTR ERVL -534 24 1 1757 93 14 50 chrX 16753942 16754220 -145845710 - L1MB3 LINE L1 -4 6179 5912 387 148 0 0 chrX 16755097 16755158 -145844772 - MER94 DNA DNA -35 99 39 1919 160 3 0 chrX 16755175 16755469 -145844461 + AluJo SINE Alu 1 295 -17 479 261 65 38 chrX 16755871 16756055 -145843875 + MIR SINE MIR 7 195 -67 2110 122 10 6 chrX 16756074 16756385 -145843545 + AluSx SINE Alu 1 312 0 953 144 0 0 chrX 16757213 16757345 -145842585 + FLAM_C SINE Alu 2 133 0 2374 47 40 3 chrX 16757609 16757907 -145842023 + AluY SINE Alu 1 309 -2 10309 186 40 45 chrX 16758981 16760273 -145839657 - L1MB8 LINE L1 -1 6988 5690 1996 103 107 0 chrX 16760273 16760545 -145839385 - AluSx SINE Alu -11 301 1 10309 186 40 45 chrX 16760545 16762257 -145837673 - L1MB8 LINE L1 -1299 5690 3970 2646 87 62 0 chrX 16762257 16762612 -145837318 - MER51B LTR ERV1 0 377 1 10309 186 40 45 chrX 16762612 16764603 -145835327 - L1MB8 LINE L1 -3019 3970 84 2079 121 0 0 chrX 16764603 16764893 -145835037 + AluJb SINE Alu 2 291 -21 10309 186 40 45 chrX 16764893 16764961 -145834969 - L1MB8 LINE L1 -6905 84 17 2252 119 0 0 chrX 16765536 16765830 -145834100 - AluSx SINE Alu -18 294 1 23 0 0 0 chrX 16767039 16767062 -145832868 + AT_rich Low_complexity Low_complexity 1 23 0 686 212 21 108 chrX 16767085 16767268 -145832662 - L2 LINE L2 0 3313 3154 2268 73 30 7 chrX 16767268 16767568 -145832362 - AluY SINE Alu -4 307 1 686 212 21 108 chrX 16767568 16767625 -145832305 - L2 LINE L2 -159 3154 3094 652 204 0 9 chrX 16767653 16767766 -145832164 - AluJ SINE Alu -10 302 191 941 139 0 0 chrX 16767770 16767907 -145832023 - AluJ SINE Alu -175 137 1 208 259 102 46 chrX 16767942 16768050 -145831880 - MIR SINE MIR -76 132 19 2081 116 0 14 chrX 16768207 16768500 -145831430 - AluSg SINE Alu -21 289 1 2356 72 10 0 chrX 16768530 16768822 -145831108 + AluSg SINE Alu 1 295 -15 1167 126 0 0 chrX 16768832 16768991 -145830939 + AluSp SINE Alu 135 293 -20 239 321 24 0 chrX 16769663 16769747 -145830183 - MIR SINE MIR -59 149 64 29 47 0 0 chrX 16769883 16769926 -145830004 + AT_rich Low_complexity Low_complexity 1 43 0 750 214 141 5 chrX 16769976 16770168 -145829762 - MER2 DNA MER2_type 0 345 128 238 228 35 18 chrX 16770168 16770225 -145829705 + Tigger5 DNA MER2_type 2261 2318 -5 290 175 238 0 chrX 16770227 16770290 -145829640 - Tigger5 DNA MER2_type -2245 78 1 * 782 160 20 53 chrX 16770290 16770428 -145829502 - MER2 DNA MER2_type -211 134 2 341 260 122 8 chrX 16771096 16771219 -145828711 - MIR3 SINE MIR -6 202 66 2292 109 0 3 chrX 16771275 16771586 -145828344 + AluSx SINE Alu 1 310 -2 1602 186 3 23 chrX 16771644 16771945 -145827985 - AluJb SINE Alu -16 296 2 3955 96 4 6 chrX 16772532 16773044 -145826886 - MER9 LTR ERVK 0 511 1 2001 136 0 0 chrX 16773045 16773331 -145826599 - AluJb SINE Alu -26 286 1 2448 84 0 0 chrX 16773883 16774181 -145825749 - AluSx SINE Alu -14 298 1 2302 107 10 0 chrX 16774549 16774858 -145825072 - AluSx SINE Alu 0 312 1 209 294 59 0 chrX 16775053 16775121 -145824809 - MIR SINE MIR -103 105 34 2311 104 0 0 chrX 16775137 16775435 -145824495 + AluSc SINE Alu 1 298 -11 2269 109 0 3 chrX 16776594 16776905 -145823025 - AluSx SINE Alu -2 310 1 295 261 115 46 chrX 16777101 16777231 -145822699 - L2 LINE L2 -2 3311 3173 2276 102 0 0 chrX 16777241 16777534 -145822396 - AluSx SINE Alu -19 293 1 2458 75 0 0 chrX 16777544 16777839 -145822091 - AluSc SINE Alu -14 295 1 526 276 16 45 chrX 16777839 16778105 -145821825 - L1MC4a LINE L1 -176 5945 5683 * 3120 131 23 23 chrX 16778097 16778622 -145821308 + L1MA9 LINE L1 5266 5790 -522 22 0 0 0 chrX 16778630 16778652 -145821278 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chrX 16778666 16778716 -145821214 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1767 144 8 0 chrX 16778720 16778983 -145820947 + MER2 DNA MER2_type 7 271 -74 2192 119 3 0 chrX 16778998 16779293 -145820637 + AluJb SINE Alu 1 296 -16 1311 126 70 0 chrX 16779330 16779545 -145820385 + L1MA9 LINE L1 5782 6011 -301 403 99 10 168 chrX 16779544 16779645 -145820285 + L1MA9 LINE L1 6228 6312 0 * 306 0 0 0 chrX 16779651 16779685 -145820245 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chrX 16779822 16779852 -145820078 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chrX 16779908 16779930 -145820000 + (CA)n Simple_repeat Simple_repeat 1 22 0 8745 220 47 54 chrX 16779942 16780622 -145819308 - L1MB7 LINE L1 -9 6411 5727 2337 95 0 3 chrX 16780622 16780927 -145819003 - AluSq SINE Alu -9 304 1 8745 220 47 54 chrX 16780927 16781162 -145818768 - L1MB7 LINE L1 -693 5727 5492 261 0 0 0 chrX 16781162 16781191 -145818739 + (TA)n Simple_repeat Simple_repeat 2 30 0 1949 131 38 0 chrX 16781191 16781481 -145818449 - AluJb SINE Alu -11 301 1 8745 220 47 54 chrX 16781481 16782331 -145817599 - L1MB7 LINE L1 -927 5493 4638 1588 152 109 7 chrX 16782331 16782614 -145817316 - AluJo SINE Alu 0 312 1 8745 220 47 54 chrX 16782614 16782673 -145817257 - L1MB7 LINE L1 -1782 4638 4580 2435 83 0 0 chrX 16782673 16782973 -145816957 + AluSg SINE Alu 1 300 -10 8745 220 47 54 chrX 16782973 16783407 -145816523 - L1MB7 LINE L1 -1840 4580 4144 6375 114 8 11 chrX 16783407 16784702 -145815228 - L1PA16 LINE L1 -3 6163 4872 8745 220 47 54 chrX 16784702 16785465 -145814465 - L1MB7 LINE L1 -2276 4144 3377 1337 103 0 0 chrX 16785465 16785639 -145814291 - AluSp SINE Alu -3 310 137 8745 220 47 54 chrX 16785639 16786643 -145813287 - L1MB7 LINE L1 -3043 3377 2339 333 0 0 0 chrX 16786643 16786680 -145813250 + (TG)n Simple_repeat Simple_repeat 2 38 0 227 296 80 77 chrX 16786762 16786923 -145813007 - L1M4 LINE L1 -1152 4994 4830 2331 89 0 3 chrX 16786923 16787214 -145812716 - AluSc SINE Alu -19 290 1 227 296 80 77 chrX 16787214 16787363 -145812567 - L1M4 LINE L1 -1316 4830 4683 225 154 0 0 chrX 16787435 16787474 -145812456 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 2253 119 0 0 chrX 16787945 16788239 -145811691 - AluSg SINE Alu -12 298 5 984 225 171 23 chrX 16788573 16788959 -145810971 + L1MEd LINE L1 561 1003 -5116 2167 110 0 36 chrX 16788975 16789284 -145810646 + AluSq SINE Alu 1 298 -15 419 271 76 48 chrX 16789284 16789597 -145810333 + L1MEd LINE L1 1085 1399 -4730 1537 244 100 37 chrX 16789648 16789963 -145809967 + L1MEd LINE L1 2267 2561 -3568 2415 78 0 0 chrX 16789963 16790259 -145809671 - AluY SINE Alu -15 296 1 1537 244 100 37 chrX 16790259 16790516 -145809414 + L1MEd LINE L1 2561 2895 -3234 2524 63 0 0 chrX 16790516 16790819 -145809111 + AluY SINE Alu 1 303 -8 1537 244 100 37 chrX 16790819 16790955 -145808975 + L1MEd LINE L1 2895 3021 -3108 1949 133 0 14 chrX 16790981 16791286 -145808644 - AluSx SINE Alu 0 301 1 414 0 0 0 chrX 16791333 16791379 -145808551 + (GA)n Simple_repeat Simple_repeat 1 46 0 237 241 19 142 chrX 16791394 16791556 -145808374 - LTR41 LTR ERVL -132 641 500 596 267 13 83 chrX 16791756 16791982 -145807948 - LTR41 LTR ERVL -547 248 5 1438 282 58 13 chrX 16792019 16792084 -145807846 + L1M4 LINE L1 4373 4434 -1712 1644 62 0 0 chrX 16792084 16792277 -145807653 - AluY SINE Alu -13 298 106 1438 282 58 13 chrX 16792277 16792760 -145807170 + L1M4 LINE L1 4434 4946 -1200 255 235 0 104 chrX 16792833 16792917 -145807013 + L1ME4a LINE L1 6017 6089 -32 2079 109 0 11 chrX 16792917 16793232 -145806698 + AluSx SINE Alu 1 312 0 255 235 0 104 chrX 16793232 16793261 -145806669 + L1ME4a LINE L1 6089 6119 -2 2259 96 0 0 chrX 16793734 16794026 -145805904 + AluSg SINE Alu 1 292 -18 2172 128 0 0 chrX 16794240 16794538 -145805392 - AluSx SINE Alu -14 298 1 584 277 80 28 chrX 16794893 16795106 -145804824 + MIR SINE MIR 2 225 -37 561 125 0 23 chrX 16795558 16795646 -145804284 + LTR54 LTR ERV1 1 86 -424 2513 68 10 0 chrX 16795992 16796300 -145803630 - AluSp SINE Alu -2 311 1 1558 184 77 21 chrX 16797728 16798131 -145801799 + LTR54 LTR ERV1 1 480 -30 551 295 44 18 chrX 16798133 16798341 -145801589 + MER57-int LTR ERV1 1913 2100 -4231 1060 195 55 61 chrX 16798387 16798738 -145801192 + MSTD LTR MaLR 1 396 0 329 188 58 0 chrX 16798988 16799057 -145800873 + MER57-int LTR ERV1 467 539 -6998 356 177 0 101 chrX 16799355 16799434 -145800496 + MER57-int LTR ERV1 755 825 -4046 2280 112 3 0 chrX 16799440 16799744 -145800186 + AluSq SINE Alu 1 305 -8 2393 88 7 0 chrX 16799817 16800124 -145799806 - AluSg SINE Alu -1 309 1 270 175 48 0 chrX 16800205 16800268 -145799662 + LTR57-int LTR ERVL 449 514 -4829 288 0 0 0 chrX 16800468 16800500 -145799430 + (A)n Simple_repeat Simple_repeat 1 32 0 2179 131 0 0 chrX 16800655 16800952 -145798978 - AluSq SINE Alu -16 297 1 2343 51 6 41 chrX 16800994 16801310 -145798620 + AluY SINE Alu 1 305 -6 258 269 0 0 chrX 16801771 16801823 -145798107 + MER57-int LTR ERV1 3363 3414 -4123 737 188 125 12 chrX 16801838 16801998 -145797932 + MER34C LTR ERV1 160 337 -248 2251 77 0 20 chrX 16801998 16802298 -145797632 - AluY SINE Alu -17 294 1 484 138 41 152 chrX 16802299 16802444 -145797486 + MER57-int LTR ERV1 1994 3552 -3985 766 259 126 40 chrX 16802593 16803300 -145796630 + LTR1 LTR ERV1 28 1009 -11 487 214 115 73 chrX 16803407 16803599 -145796331 + MER57-int LTR ERV1 2294 2493 -2378 2139 88 20 0 chrX 16803683 16803977 -145795953 + AluSg SINE Alu 1 300 -10 635 183 39 130 chrX 16804214 16804569 -145795361 + MER57-int LTR ERV1 1718 2040 -6080 679 250 24 38 chrX 16804574 16804631 -145795299 + MER57-int LTR ERV1 2344 2400 -2723 2135 109 0 0 chrX 16804631 16804925 -145795005 + AluSx SINE Alu 1 294 -18 679 250 24 38 chrX 16804925 16805079 -145794851 + MER57-int LTR ERV1 2400 2552 -2571 848 211 0 0 chrX 16805454 16805615 -145794315 - FRAM SINE Alu -14 162 2 387 255 121 34 chrX 16806018 16806167 -145793763 + MER5B DNA MER1_type 17 178 0 251 291 22 25 chrX 16806183 16806314 -145793616 - MER5B DNA MER1_type -2 176 56 2180 111 0 0 chrX 16806582 16806880 -145793050 - AluSg SINE Alu -12 298 1 2324 80 3 0 chrX 16807303 16807604 -145792326 - AluSq SINE Alu -11 302 1 22 0 0 0 chrX 16808005 16808027 -145791903 + AT_rich Low_complexity Low_complexity 1 22 0 2304 100 0 0 chrX 16808338 16808647 -145791283 - AluSx SINE Alu -3 309 1 2138 113 7 0 chrX 16809068 16809370 -145790560 - AluSq SINE Alu -9 304 1 1534 162 38 17 chrX 16809371 16809459 -145790471 + MER57-int LTR ERV1 3060 3145 -1791 1966 86 4 0 chrX 16809459 16809716 -145790214 + AluSx SINE Alu 42 299 -13 1534 162 38 17 chrX 16809716 16809955 -145789975 + MER57-int LTR ERV1 3145 3812 -1124 2284 71 7 3 chrX 16810050 16810346 -145789584 - AluSx SINE Alu -15 297 1 2538 226 49 19 chrX 16810357 16811088 -145788842 + MER57-int LTR ERV1 3411 4230 -641 2376 211 28 8 chrX 16811098 16811568 -145788362 + MER57-int LTR ERV1 6665 7143 -394 1894 142 71 136 chrX 16811571 16811817 -145788113 + LTR54 LTR ERV1 1 195 -315 2006 88 36 26 chrX 16811817 16812122 -145787808 + AluSq SINE Alu 1 308 -5 1894 142 71 136 chrX 16812122 16812412 -145787518 + LTR54 LTR ERV1 195 502 -8 1956 232 186 14 chrX 16812510 16813075 -145786855 + MLT2F LTR ERVL 2 663 0 501 277 0 15 chrX 16813078 16813215 -145786715 + ERVL-F LTR ERVL 4 138 -5626 886 265 31 5 chrX 16813413 16813636 -145786294 + ERVL-F LTR ERVL 386 614 -5150 4755 42 3 45 chrX 16813638 16813905 -145786025 - LTR10C LTR ERV1 -1 590 313 2135 104 0 3 chrX 16813905 16814204 -145785726 - AluY SINE Alu -13 298 1 4755 42 3 45 chrX 16814204 16814552 -145785378 - LTR10C LTR ERV1 -278 313 1 433 273 0 50 chrX 16814600 16814739 -145785191 + ERVL-F LTR ERVL 763 894 -4870 656 304 91 45 chrX 16814797 16815195 -145784735 + L1MEc LINE L1 1847 2262 -4134 383 243 133 110 chrX 16815261 16815434 -145784496 + MLT1H LTR MaLR 296 472 -77 1892 134 9 22 chrX 16815438 16815788 -145784142 - MER4A LTR ERV1 0 664 261 381 139 241 0 chrX 16815788 16815867 -145784063 - MER4A LTR ERV1 -566 98 1 2059 104 6 22 chrX 16815889 16816064 -145783866 - AluSp SINE Alu 0 313 144 5721 127 18 16 chrX 16816064 16816992 -145782938 - LTR5 LTR ERVK 0 969 40 2059 104 6 22 chrX 16816992 16817133 -145782797 - AluSp SINE Alu -169 144 2 225 273 45 55 chrX 16817213 16817276 -145782654 + MLT1H-int LTR MaLR 16 79 -1292 5509 58 1 0 chrX 16817276 16817935 -145781995 - PABL_A LTR ERV1 0 660 1 225 273 45 55 chrX 16817935 16817981 -145781949 + MLT1H-int LTR MaLR 79 124 -1247 378 293 34 27 chrX 16818075 16818222 -145781708 + MLT1H-int LTR MaLR 397 544 -827 2705 228 130 29 chrX 16818345 16819316 -145780614 + L1MEc LINE L1 37 908 -5307 2312 83 3 0 chrX 16819316 16819616 -145780314 + AluSp SINE Alu 1 301 -12 2705 228 130 29 chrX 16819616 16820124 -145779806 + L1MEc LINE L1 908 4929 -1286 2376 144 25 74 chrX 16820140 16820308 -145779622 - L1MC3 LINE L1 -7 7778 7603 1931 86 0 122 chrX 16820308 16820635 -145779295 - AluSq SINE Alu -16 287 1 2376 144 25 74 chrX 16820635 16820660 -145779270 - L1MC3 LINE L1 -182 7603 7578 2111 133 0 51 chrX 16820660 16821014 -145778916 + MER1B DNA MER1_type 2 337 0 2376 144 25 74 chrX 16821014 16821305 -145778625 - L1MC3 LINE L1 -207 7578 7317 272 170 0 0 chrX 16821372 16821419 -145778511 - L1MC3 LINE L1 -475 7310 7264 469 284 85 0 chrX 16821554 16821695 -145778235 - MIR SINE MIR -22 240 88 2045 209 17 41 chrX 16822251 16822697 -145777233 - L1MB8 LINE L1 -6 6172 5740 2005 95 0 11 chrX 16822697 16822971 -145776959 - AluSx SINE Alu -41 271 1 2045 209 17 41 chrX 16822971 16823059 -145776871 - L1MB8 LINE L1 -438 5740 5651 2073 130 0 0 chrX 16823423 16823731 -145776199 - AluSq SINE Alu -5 308 1 442 259 32 50 chrX 16823733 16824011 -145775919 - L1MB8 LINE L1 -814 5332 5060 3257 183 79 5 chrX 16824012 16824620 -145775310 - MER82 DNA MER2_type 0 653 1 912 272 54 48 chrX 16824708 16824882 -145775048 - L1MB8 LINE L1 -1228 4918 4747 1937 144 0 3 chrX 16824882 16825174 -145774756 - AluJb SINE Alu -18 294 4 912 272 54 48 chrX 16825174 16825440 -145774490 - L1MB8 LINE L1 -1399 4747 4475 498 321 53 42 chrX 16825649 16826004 -145773926 - L1MEd LINE L1 -5327 792 434 668 247 21 21 chrX 16826185 16826371 -145773559 - L1MEd LINE L1 -5920 199 14 850 141 0 0 chrX 16826582 16826703 -145773227 - FLAM_A SINE Alu -12 121 1 198 0 0 0 chrX 16826710 16826732 -145773198 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1926 128 17 7 chrX 16826854 16827152 -145772778 - AluSx SINE Alu -11 301 1 302 18 73 0 chrX 16827287 16827342 -145772588 + (TA)n Simple_repeat Simple_repeat 2 60 0 2297 58 0 10 chrX 16827342 16827635 -145772295 - AluY SINE Alu -21 290 1 1483 236 99 22 chrX 16827747 16828162 -145771768 - L1ME3A LINE L1 -39 6131 5685 442 283 135 60 chrX 16828158 16828347 -145771583 - L1ME1 LINE L1 -336 5830 5657 * 2505 95 52 3 chrX 16828347 16828694 -145771236 - THE1B LTR MaLR 0 364 1 442 283 135 60 chrX 16828694 16828769 -145771161 - L1ME1 LINE L1 -509 5657 5589 180 0 0 0 chrX 16828769 16828789 -145771141 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 442 283 135 60 chrX 16828789 16829057 -145770873 - L1ME1 LINE L1 -577 5589 5260 2193 106 3 0 chrX 16829070 16829372 -145770558 + AluSg SINE Alu 1 303 -7 1845 156 7 7 chrX 16829450 16829758 -145770172 + MER49 LTR ERV1 5 312 -611 591 89 13 0 chrX 16829759 16829838 -145770092 + AluSp SINE Alu 2 81 -231 2408 53 7 0 chrX 16829839 16830141 -145769789 - AluY SINE Alu -7 304 1 1741 65 4 9 chrX 16830141 16830370 -145769560 + AluSp SINE Alu 67 294 -19 935 152 33 65 chrX 16830371 16830555 -145769375 + MER49 LTR ERV1 301 478 -445 680 120 93 42 chrX 16830542 16830732 -145769198 + MER49 LTR ERV1 587 890 -33 * 2047 127 0 16 chrX 16830735 16831090 -145768840 + AluSx SINE Alu 3 352 0 320 241 0 0 chrX 16831287 16831366 -145768564 - LTR58 LTR ERV1 -230 449 371 3889 143 23 62 chrX 16831698 16832278 -145767652 + MER50 LTR ERV1 1 602 -132 1784 157 4 0 chrX 16832278 16832585 -145767345 - AluSx SINE Alu 0 308 1 3889 143 23 62 chrX 16832585 16832596 -145767334 + MER50 LTR ERV1 602 612 -122 2649 13 0 0 chrX 16832596 16832896 -145767034 - AluY SINE Alu -11 300 1 3889 143 23 62 chrX 16832896 16833042 -145766888 + MER50 LTR ERV1 612 711 -23 275 318 31 75 chrX 16833050 16833112 -145766818 - L1MDa LINE L1 -1905 4635 4572 1085 169 0 0 chrX 16833112 16833301 -145766629 + MER53 DNA DNA 1 189 0 275 318 31 75 chrX 16833301 16833373 -145766557 - L1MDa LINE L1 -1968 4572 4498 366 226 132 31 chrX 16833373 16833420 -145766510 - MER5B DNA MER1_type -3 175 134 221 0 35 0 chrX 16833420 16833449 -145766481 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 366 226 132 31 chrX 16833449 16833560 -145766370 - MER5B DNA MER1_type -44 134 1 275 318 31 75 chrX 16833560 16833745 -145766185 - L1MDa LINE L1 -2042 4498 4329 1724 108 69 86 chrX 16833776 16833956 -145765974 + LTR23 LTR ERV1 1 182 -255 1842 143 7 3 chrX 16833956 16834256 -145765674 - AluJb SINE Alu -11 301 1 1724 108 69 86 chrX 16834256 16834375 -145765555 + LTR23 LTR ERV1 182 296 -141 2321 45 7 16 chrX 16834375 16834683 -145765247 + AluY SINE Alu 1 305 -6 1724 108 69 86 chrX 16834683 16834742 -145765188 + LTR23 LTR ERV1 296 354 -83 947 123 20 113 chrX 16834743 16834946 -145764984 + MER4E LTR ERV1 1 184 -595 2205 72 3 7 chrX 16835027 16835339 -145764591 + AluY SINE Alu 1 311 0 3771 136 19 28 chrX 16836320 16836937 -145762993 + MER4E LTR ERV1 168 779 0 411 159 29 0 chrX 16836937 16837000 -145762930 + LTR23 LTR ERV1 352 416 -21 926 128 0 8 chrX 16837002 16837135 -145762795 + FLAM_C SINE Alu 2 133 0 296 263 47 96 chrX 16837232 16837455 -145762475 - L1MDa LINE L1 -2358 4182 3966 506 198 30 0 chrX 16837455 16837556 -145762374 + MER5A DNA MER1_type 9 112 -77 204 187 286 22 chrX 16837490 16837581 -145762349 - MER5A DNA MER1_type -32 157 43 * 1611 290 117 59 chrX 16837739 16837951 -145761979 - L1MDa LINE L1 -2697 3843 3645 2093 90 3 60 chrX 16837951 16838283 -145761647 - AluSp SINE Alu 0 313 1 1611 290 117 59 chrX 16838283 16838390 -145761540 - L1MDa LINE L1 -2895 3645 3546 1892 51 0 4 chrX 16838390 16838626 -145761304 - AluY SINE Alu -76 235 1 1611 290 117 59 chrX 16838626 16838805 -145761125 - L1MDa LINE L1 -2994 3546 3379 2255 88 3 0 chrX 16838805 16839111 -145760819 - AluY SINE Alu -4 307 1 1611 290 117 59 chrX 16839111 16839450 -145760480 - L1MDa LINE L1 -3161 3379 3061 2118 111 0 0 chrX 16839450 16839747 -145760183 + AluSx SINE Alu 1 297 -15 1611 290 117 59 chrX 16839747 16840306 -145759624 - L1MDa LINE L1 -3479 3061 2351 2183 124 0 0 chrX 16840411 16840717 -145759213 - AluSx SINE Alu -6 306 1 2559 92 6 3 chrX 16840797 16841134 -145758796 + THE1B LTR MaLR 27 364 0 620 229 126 17 chrX 16842239 16842414 -145757516 - MIR SINE MIR -44 218 25 500 252 8 0 chrX 16843662 16843793 -145756137 + MER53 DNA DNA 23 154 -35 1338 121 5 5 chrX 16843793 16843992 -145755938 - AluSg/x SINE Alu -20 292 94 313 133 0 0 chrX 16843994 16844039 -145755891 - Alu SINE Alu -255 45 1 295 145 0 81 chrX 16844038 16844062 -145755868 - MER53 DNA DNA -132 57 33 * 2280 94 0 7 chrX 16844062 16844371 -145755559 - AluSx SINE Alu -5 307 1 295 145 0 81 chrX 16844371 16844408 -145755522 - MER53 DNA DNA -156 33 1 205 343 151 17 chrX 16844410 16844582 -145755348 + MIR SINE MIR 25 219 -43 591 303 71 17 chrX 16844597 16845003 -145754927 + LTR16A1 LTR ERVL 1 428 -29 239 85 17 51 chrX 16845593 16845652 -145754278 + (TTCCC)n Simple_repeat Simple_repeat 1 57 0 1859 124 4 4 chrX 16845656 16845931 -145753999 - AluSx SINE Alu -37 275 1 289 302 47 39 chrX 16845931 16846060 -145753870 + MIR SINE MIR 61 190 -72 324 128 0 0 chrX 16846256 16846303 -145753627 - FLAM_A SINE Alu -2 131 85 1297 182 0 0 chrX 16846303 16846523 -145753407 - AluJo SINE Alu -92 220 1 791 157 90 30 chrX 16847203 16847358 -145752572 - L1MA9 LINE L1 -327 5985 5818 2156 93 0 3 chrX 16847358 16847647 -145752283 - AluSx SINE Alu -13 299 12 810 146 0 0 chrX 16847807 16847937 -145751993 - AluJb SINE Alu -45 267 138 531 330 98 12 chrX 16847947 16848274 -145751656 + L2 LINE L2 2952 3306 -7 399 264 24 24 chrX 16848281 16848406 -145751524 - MIR SINE MIR -131 131 7 1790 151 0 26 chrX 16849142 16849453 -145750477 - AluJb SINE Alu -9 303 1 663 354 26 18 chrX 16849459 16849951 -145749979 - L1M4 LINE L1 -3399 2747 2252 2211 101 0 0 chrX 16850248 16850546 -145749384 - AluSx SINE Alu -14 298 1 2120 89 0 3 chrX 16850703 16850995 -145748935 + AluSg SINE Alu 1 291 -19 193 71 0 48 chrX 16850995 16851037 -145748893 + (TA)n Simple_repeat Simple_repeat 2 41 0 227 67 0 107 chrX 16851139 16851288 -145748642 + (TA)n Simple_repeat Simple_repeat 1 133 0 346 56 11 101 chrX 16851301 16851479 -145748451 + (TA)n Simple_repeat Simple_repeat 2 163 0 422 183 0 0 chrX 16851537 16851608 -145748322 + AluJ/FLAM SINE Alu 2 72 -240 632 239 80 42 chrX 16851802 16852066 -145747864 + MLT1L LTR MaLR 3 276 -339 242 224 0 45 chrX 16852080 16852147 -145747783 + GA-rich Low_complexity Low_complexity 1 64 0 909 265 87 10 chrX 16852151 16852449 -145747481 + MLT1L LTR MaLR 287 607 -8 1572 149 3 65 chrX 16852504 16852812 -145747118 - AluJo SINE Alu -23 289 1 346 263 35 26 chrX 16853213 16853327 -145746603 - MIR SINE MIR -7 255 141 295 175 113 38 chrX 16853980 16854060 -145745870 - MIR SINE MIR -109 153 68 427 346 48 24 chrX 16854221 16854429 -145745501 - MIR SINE MIR -25 237 25 300 230 58 24 chrX 16854958 16855082 -145744848 + MIR SINE MIR 36 164 -66 244 331 58 19 chrX 16856202 16856356 -145743574 + L2 LINE L2 2903 3062 -251 569 288 197 25 chrX 16858171 16858260 -145741670 + LTR67 LTR ERVL 33 105 -452 1785 170 28 0 chrX 16858260 16858549 -145741381 - AluJb SINE Alu -15 297 1 569 288 197 25 chrX 16858549 16858900 -145741030 + LTR67 LTR ERVL 105 549 -8 237 224 26 53 chrX 16860357 16860433 -145739497 - MIR SINE MIR -122 140 67 825 200 42 47 chrX 16866421 16866636 -145733294 + MER20 DNA MER1_type 3 216 -3 201 214 0 39 chrX 16867175 16867241 -145732689 + MIR SINE MIR 11 73 -135 403 209 174 0 chrX 16870363 16870478 -145729452 - MER112 DNA MER1_type -8 252 118 180 0 0 0 chrX 16870582 16870602 -145729328 + (T)n Simple_repeat Simple_repeat 1 20 0 2377 92 0 0 chrX 16871421 16871715 -145728215 - AluSg SINE Alu -16 294 1 1975 138 21 3 chrX 16871718 16872007 -145727923 - AluJb SINE Alu -14 298 5 2450 88 3 0 chrX 16872054 16872361 -145727569 + AluSp SINE Alu 1 308 -5 933 120 0 47 chrX 16872370 16872520 -145727410 + FLAM_C SINE Alu 1 143 0 254 248 109 20 chrX 16872716 16872817 -145727113 - L1ME4a LINE L1 -208 5913 5804 2296 79 0 14 chrX 16874757 16875049 -145724881 - AluSg SINE Alu -22 288 1 1752 190 40 3 chrX 16878018 16878370 -145721560 + MLT1A1 LTR MaLR 1 365 0 300 301 0 12 chrX 16878733 16878816 -145721114 + L1ME3A LINE L1 5908 5989 -181 667 318 47 50 chrX 16878901 16879416 -145720514 + MER34 LTR ERV1 1 513 -29 21 0 0 0 chrX 16879684 16879705 -145720225 + AT_rich Low_complexity Low_complexity 1 21 0 2093 123 20 10 chrX 16879772 16880064 -145719866 + AluJb SINE Alu 1 295 -17 2306 97 0 13 chrX 16880585 16880747 -145719183 - AluSx SINE Alu -17 295 137 2327 110 3 0 chrX 16880747 16881047 -145718883 - AluSp SINE Alu -12 301 1 2306 97 0 13 chrX 16881047 16881183 -145718747 - AluSx SINE Alu -175 137 1 433 296 131 28 chrX 16881380 16881556 -145718374 - MIR3 SINE MIR -7 201 8 1605 134 58 0 chrX 16881798 16882059 -145717871 - Tigger3b DNA MER2_type 0 1232 957 988 149 0 0 chrX 16882059 16882200 -145717730 + FLAM_C SINE Alu 1 141 -2 2233 107 13 0 chrX 16882205 16882504 -145717426 + AluSp SINE Alu 1 303 -10 425 294 30 23 chrX 16882607 16882797 -145717133 + LTR1 LTR ERV1 88 425 -546 * 1450 197 55 124 chrX 16882781 16883474 -145716456 + LTR1B LTR ERV1 314 1020 0 2131 153 70 33 chrX 16883475 16883964 -145715966 + MER4-int LTR ERV1 5863 6369 -229 2704 195 53 62 chrX 16884088 16884901 -145715029 - MER21A LTR ERV1 -9 922 178 409 165 126 39 chrX 16884970 16885097 -145714833 - MER21A LTR ERV1 -767 164 27 183 296 37 12 chrX 16885671 16885752 -145714178 - MIR3 SINE MIR -5 203 121 210 381 29 0 chrX 16886018 16886123 -145713807 - MIR SINE MIR -85 123 16 408 222 178 22 chrX 16887782 16887917 -145712013 - MER5A DNA MER1_type 0 189 34 4093 147 102 9 chrX 16888451 16888679 -145711251 - Tigger3b DNA MER2_type -2140 888 683 2260 99 27 0 chrX 16888679 16888972 -145710958 - AluSg SINE Alu -9 301 1 4093 147 102 9 chrX 16888972 16889555 -145710375 - Tigger3b DNA MER2_type -2345 683 1 992 315 25 13 chrX 16889560 16889954 -145709976 + HAL1 LINE L1 84 482 -2025 258 288 135 79 chrX 16890114 16890329 -145709601 + HAL1 LINE L1 765 991 -1516 718 142 0 0 chrX 16890335 16890441 -145709489 + AluSq/x SINE Alu 2 107 -206 2049 139 16 0 chrX 16890962 16891265 -145708665 - AluJb SINE Alu -4 308 1 978 127 77 82 chrX 16891303 16891523 -145708407 - MER20 DNA MER1_type 0 219 1 2113 134 0 3 chrX 16892075 16892374 -145707556 + AluSx SINE Alu 1 298 -14 512 238 95 8 chrX 16892650 16892776 -145707154 + MIR SINE MIR 62 198 -64 250 108 0 0 chrX 16893482 16893519 -145706411 + L1PA13 LINE L1 1538 1574 -5213 216 0 0 0 chrX 16893519 16893543 -145706387 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 640 290 168 10 chrX 16893586 16893889 -145706041 + L3 LINE CR1 944 1294 -283 1140 233 113 43 chrX 16894044 16894487 -145705443 + MLT1K LTR MaLR 1 474 -2 294 254 136 70 chrX 16894761 16895204 -145704726 + L2 LINE L2 2614 3083 -189 2420 98 0 13 chrX 16896944 16897259 -145702671 - AluSx SINE Alu -1 311 1 287 335 19 31 chrX 16897697 16897954 -145701976 - L2 LINE L2 -613 2701 2448 2041 102 0 66 chrX 16898372 16898676 -145701254 + AluSx SINE Alu 5 288 -24 2686 108 38 17 chrX 16898695 16899112 -145700818 + MSTB LTR MaLR 1 426 0 2062 148 0 3 chrX 16899112 16899410 -145700520 - AluJo SINE Alu -15 297 1 1038 221 81 68 chrX 16899414 16899496 -145700434 + HAL1 LINE L1 1499 1578 -929 2246 124 0 0 chrX 16899496 16899794 -145700136 - AluSx SINE Alu -14 298 1 1038 221 81 68 chrX 16899794 16900095 -145699835 + HAL1 LINE L1 1578 1887 -620 1411 272 169 13 chrX 16900175 16900877 -145699053 + HAL1 LINE L1 1690 2501 -6 2098 138 0 25 chrX 16901658 16902014 -145697916 + AluJo SINE Alu 1 348 0 2112 116 27 0 chrX 16903383 16903676 -145696254 + AluSx SINE Alu 1 301 -11 25 31 0 0 chrX 16903806 16903838 -145696092 + AT_rich Low_complexity Low_complexity 1 32 0 2427 91 3 0 chrX 16904200 16904496 -145695434 + AluSq SINE Alu 1 297 -16 1632 134 67 16 chrX 16904678 16904992 -145694938 + L1MB2 LINE L1 5842 6171 0 2141 123 34 0 chrX 16905165 16905457 -145694473 - AluSx SINE Alu -10 302 1 209 220 68 17 chrX 16905560 16905619 -145694311 + L3 LINE CR1 1401 1462 -115 226 228 35 0 chrX 16907607 16907664 -145692266 - L2 LINE L2 -10 3262 3204 274 297 61 68 chrX 16911676 16911782 -145688148 - MIR SINE MIR 0 262 156 3092 134 125 10 chrX 16911782 16912365 -145687565 + MER39B LTR ERV1 3 652 -1 274 297 61 68 chrX 16912365 16912406 -145687524 - MIR SINE MIR -106 156 116 512 206 63 0 chrX 16912649 16912775 -145687155 - MIR3 SINE MIR -13 195 62 251 217 159 0 chrX 16914780 16914849 -145685081 + L1ME4a LINE L1 5975 6054 -67 2271 118 0 0 chrX 16914951 16915247 -145684683 + AluSx SINE Alu 1 296 -16 217 313 52 17 chrX 16915473 16915588 -145684342 + L2 LINE L2 3140 3258 -14 473 212 151 7 chrX 16915634 16915780 -145684150 + MER91A DNA MER1_type 30 196 0 2240 101 0 42 chrX 16917728 16918035 -145681895 - AluSx SINE Alu -18 294 1 1027 113 27 7 chrX 16918774 16918924 -145681006 + L1MA4A LINE L1 5800 5952 -351 231 321 64 0 chrX 16919347 16919456 -145680474 + L2 LINE L2 3196 3311 -2 415 348 137 14 chrX 16919464 16920022 -145679908 - L2 LINE L2 -10 3262 2616 1208 230 113 56 chrX 16920140 16920650 -145679280 + MLT1G1 LTR MaLR 23 595 0 1809 148 20 27 chrX 16921266 16921563 -145678367 - AluJo SINE Alu -17 295 1 2563 62 0 0 chrX 16921573 16921878 -145678052 - AluY SINE Alu -6 305 1 293 180 22 67 chrX 16922913 16923002 -145676928 + LTR33A LTR ERVL 439 523 0 296 241 38 25 chrX 16924546 16924625 -145675305 - MIR SINE MIR -179 83 4 1873 158 0 16 chrX 16924648 16924951 -145674979 + AluJo SINE Alu 3 300 -12 189 229 16 66 chrX 16925182 16925243 -145674687 + L2 LINE L2 3205 3262 -10 907 135 0 0 chrX 16925728 16925861 -145674069 - FLAM_C SINE Alu 0 133 1 201 39 0 0 chrX 16925998 16926024 -145673906 + (TG)n Simple_repeat Simple_repeat 1 26 0 391 262 12 0 chrX 16926262 16926346 -145673584 + Charlie8 DNA MER1_type 9 93 -2324 297 310 7 28 chrX 16927789 16927934 -145671996 - L2 LINE L2 -649 2665 2524 1012 146 118 5 chrX 16928240 16928452 -145671478 - Charlie1a DNA MER1_type 0 1455 1220 993 110 0 7 chrX 16928471 16928607 -145671323 + AluJo SINE Alu 1 135 -177 5245 175 63 51 chrX 16928608 16929197 -145670733 - Charlie1a DNA MER1_type -1527 1234 654 2243 81 20 14 chrX 16929197 16929493 -145670437 + AluSq SINE Alu 2 299 -14 5245 175 63 51 chrX 16929493 16930119 -145669811 - Charlie1a DNA MER1_type -2107 654 4 646 282 65 72 chrX 16930244 16930297 -145669633 - L1ME3 LINE L1 -284 5878 5826 1127 103 72 10 chrX 16930297 16930318 -145669612 - L1MA8 LINE L1 -4 6287 6269 1847 160 10 0 chrX 16930318 16930606 -145669324 + AluJb SINE Alu 1 291 -21 1127 103 72 10 chrX 16930606 16930778 -145669152 - L1MA8 LINE L1 -22 6269 6082 646 282 65 72 chrX 16930778 16931128 -145668802 - L1ME3 LINE L1 -336 5826 5537 1146 270 84 10 chrX 16931128 16931543 -145668387 + MLT1J1 LTR MaLR 1 446 0 646 282 65 72 chrX 16931543 16931697 -145668233 - L1ME3 LINE L1 -625 5537 5383 1284 166 5 27 chrX 16932045 16932268 -145667662 - MLT1F1 LTR MaLR -8 559 342 1928 276 153 35 chrX 16932272 16933374 -145666556 - L1ME3 LINE L1 -923 5223 3904 2389 65 7 14 chrX 16933374 16933665 -145666265 - AluSx SINE Alu -23 289 1 1928 276 153 35 chrX 16933665 16934024 -145665906 - L1ME3 LINE L1 -2242 3904 3589 2319 193 101 205 chrX 16934045 16934868 -145665062 + L2 LINE L2 1071 1978 -1336 1683 202 38 17 chrX 16934868 16935214 -145664716 - MLT1A2 LTR MaLR -2 372 20 2319 193 101 205 chrX 16935214 16935503 -145664427 + L2 LINE L2 1978 2295 -1019 2416 105 11 35 chrX 16935503 16935876 -145664054 + THE1B LTR MaLR 1 364 0 2319 193 101 205 chrX 16935876 16936325 -145663605 + L2 LINE L2 2295 2780 -534 2479 97 0 0 chrX 16936325 16936635 -145663295 - AluSx SINE Alu -2 310 1 1589 119 107 16 chrX 16936826 16937136 -145662794 + MER44D DNA MER2_type 2 609 0 1389 294 51 44 chrX 16937178 16938191 -145661739 - L1ME3 LINE L1 -2897 3249 2230 2227 82 18 0 chrX 16938240 16938540 -145661390 + AluSx SINE Alu 1 305 0 313 79 0 0 chrX 16938577 16938615 -145661315 - tRNA-Asp-GAC tRNA tRNA -37 38 1 2382 75 0 13 chrX 16938792 16939098 -145660832 + AluSc SINE Alu 1 302 -7 2016 122 21 0 chrX 16939218 16939531 -145660399 + AluSx SINE Alu 1 319 0 180 125 47 16 chrX 16940132 16940196 -145659734 + (TTAA)n Simple_repeat Simple_repeat 3 68 0 3695 194 57 53 chrX 16940250 16941215 -145658715 + LTR5 LTR ERVK 1 969 0 270 0 0 0 chrX 16941430 16941466 -145658464 - L1MB3 LINE L1 0 6183 6148 2238 102 14 0 chrX 16941863 16942147 -145657783 - AluSx SINE Alu -24 288 1 221 333 45 26 chrX 16942578 16942734 -145657196 + L2 LINE L2 2905 3063 -209 1018 187 13 40 chrX 16942734 16942959 -145656971 - MER20 DNA MER1_type 0 219 1 1011 206 23 23 chrX 16942969 16943187 -145656743 + MER58A DNA MER1_type 3 220 -4 3645 104 9 2 chrX 16943538 16944103 -145655827 + L1PB1 LINE L1 5608 6176 0 2101 114 0 0 chrX 16944111 16944428 -145655502 + AluSx SINE Alu 1 317 0 225 211 0 0 chrX 16944918 16944970 -145654960 + GA-rich Low_complexity Low_complexity 3 54 0 238 251 215 12 chrX 16945433 16945596 -145654334 + L1ME4a LINE L1 5690 5885 -236 258 197 0 28 chrX 16945694 16945765 -145654165 + L1ME4a LINE L1 6047 6115 -6 1008 202 71 79 chrX 16946570 16946943 -145652987 + MLT1A1 LTR MaLR 1 426 0 186 209 0 0 chrX 16947486 16947529 -145652401 + GA-rich Low_complexity Low_complexity 2 44 0 1470 156 90 35 chrX 16947983 16948271 -145651659 + AluJo SINE Alu 1 304 -8 205 213 180 0 chrX 16948658 16948719 -145651211 + MIR3 SINE MIR 129 200 -8 719 309 99 22 chrX 16949123 16949537 -145650393 - MARNA DNA Mariner -132 454 9 2305 92 3 0 chrX 16949624 16949919 -145650011 + AluSx SINE Alu 1 296 -16 567 268 22 22 chrX 16950408 16950587 -145649343 + MIR3 SINE MIR 15 193 -15 314 320 22 39 chrX 16950721 16950899 -145649031 + MIR3 SINE MIR 16 190 -18 2395 168 37 14 chrX 16950947 16951435 -145648495 + L1MB8 LINE L1 5676 6174 -4 2270 108 0 0 chrX 16951961 16952248 -145647682 + AluSx SINE Alu 1 287 -25 2263 115 0 3 chrX 16952819 16953123 -145646807 - AluSq SINE Alu -10 303 1 198 0 0 0 chrX 16953658 16953680 -145646250 + (TA)n Simple_repeat Simple_repeat 1 22 0 25 31 0 0 chrX 16953704 16953736 -145646194 + AT_rich Low_complexity Low_complexity 1 32 0 2331 101 0 0 chrX 16953782 16954079 -145645851 - AluSq SINE Alu -16 297 1 289 295 33 0 chrX 16954108 16954230 -145645700 - L1ME4a LINE L1 -202 5919 5794 230 214 0 0 chrX 16954335 16954377 -145645553 - L1ME4a LINE L1 -459 5662 5621 272 246 0 91 chrX 16954438 16954548 -145645382 - L1ME4a LINE L1 -675 5489 5390 213 39 0 0 chrX 16954624 16954650 -145645280 + (TG)n Simple_repeat Simple_repeat 1 26 0 2127 122 0 0 chrX 16954650 16954929 -145645001 - AluSx SINE Alu -33 279 1 642 220 129 35 chrX 16954992 16955224 -145644706 + MIR SINE MIR 9 262 0 630 301 0 0 chrX 16956071 16956234 -145643696 - MLT1I LTR MaLR -24 385 223 2481 126 38 43 chrX 16956246 16956667 -145643263 - MSTA LTR MaLR -9 419 1 690 255 54 0 chrX 16956767 16956951 -145642979 + L1M4 LINE L1 4778 4971 -1175 419 227 0 0 chrX 16956952 16957027 -145642903 - L1ME4a LINE L1 -1566 4580 4506 24 32 0 0 chrX 16957131 16957162 -145642768 + AT_rich Low_complexity Low_complexity 1 31 0 2356 96 0 7 chrX 16957297 16957600 -145642330 + AluSg SINE Alu 1 301 -9 313 225 127 28 chrX 16958792 16958934 -145640996 - MIR SINE MIR -69 193 38 1145 237 37 19 chrX 16959188 16959509 -145640421 + MER46C DNA MER2_type 6 332 -6 2207 116 0 3 chrX 16959510 16959821 -145640109 + AluSx SINE Alu 1 310 -2 205 132 53 0 chrX 16961095 16961133 -145638797 + G-rich Low_complexity Low_complexity 5 44 0 222 254 0 14 chrX 16961622 16961693 -145638237 + C-rich Low_complexity Low_complexity 5 74 0 644 274 49 26 chrX 16962396 16962622 -145637308 + MIR SINE MIR 19 249 -13 232 284 0 40 chrX 16962746 16962820 -145637110 + L2 LINE L2 3202 3272 0 28 29 0 0 chrX 16964149 16964184 -145635746 + AT_rich Low_complexity Low_complexity 1 35 0 2395 116 0 0 chrX 16964271 16964582 -145635348 + AluSx SINE Alu 1 311 -1 671 168 0 16 chrX 16964868 16964993 -145634937 - FLAM_A SINE Alu -7 135 13 192 40 0 0 chrX 16965093 16965118 -145634812 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1709 177 3 3 chrX 16965885 16966167 -145633763 - AluJo SINE Alu -30 282 1 549 271 147 12 chrX 16967006 16967176 -145632754 + MER91A DNA MER1_type 4 196 0 2190 89 13 36 chrX 16968554 16968856 -145631074 + AluSq SINE Alu 1 295 -18 677 182 20 27 chrX 17020533 17020681 -145579249 - AluJb SINE Alu -165 147 1 871 280 37 5 chrX 17020681 17020895 -145579035 - MIR SINE MIR -38 224 4 2151 259 61 11 chrX 17020937 17021575 -145578355 + L1ME3A LINE L1 5501 6170 0 2073 227 129 6 chrX 17022856 17023375 -145576555 - L1ME1 LINE L1 -3 6163 5581 1663 173 0 13 chrX 17023379 17023691 -145576239 + AluJo SINE Alu 3 310 -2 372 275 49 57 chrX 17023721 17023968 -145575962 - L1ME1 LINE L1 -1801 4345 4101 1886 115 14 7 chrX 17024231 17024526 -145575404 - AluSx SINE Alu -13 299 3 2402 48 7 0 chrX 17024691 17024982 -145574948 - L1PA7 LINE L1 -28 6126 5834 270 281 62 0 chrX 17025009 17025105 -145574825 - L1ME LINE L1 -335 5835 5734 513 165 0 0 chrX 17025189 17025268 -145574662 + FLAM_A SINE Alu 43 121 -21 1032 103 0 0 chrX 17025315 17025451 -145574479 - AluSq/x SINE Alu -176 136 1 2162 113 0 13 chrX 17025461 17025771 -145574159 - AluSx SINE Alu -5 307 2 3228 127 23 8 chrX 17026804 17027333 -145572597 - MER41B LTR ERV1 0 635 99 598 94 198 0 chrX 17028681 17028777 -145571153 - MER45A DNA AcHobo -1 177 63 3151 140 47 45 chrX 17028870 17029464 -145570466 + LTR49 LTR ERV1 1 595 0 515 156 31 0 chrX 17029622 17029718 -145570212 + MER5A DNA MER1_type 12 110 -79 1202 174 17 13 chrX 17031640 17031870 -145568060 - MER58B DNA MER1_type 0 341 111 2336 67 0 10 chrX 17032070 17032382 -145567548 + AluY SINE Alu 1 309 -2 1520 153 7 54 chrX 17032402 17032696 -145567234 - AluJo SINE Alu -30 282 3 1938 126 3 0 chrX 17032892 17033177 -145566753 + AluSx SINE Alu 1 286 -26 225 0 0 0 chrX 17033706 17033731 -145566199 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 1828 107 11 0 chrX 17033777 17034040 -145565890 + AluSq SINE Alu 1 266 -47 2197 122 0 0 chrX 17035597 17035909 -145564021 + AluSx SINE Alu 1 312 0 185 0 0 39 chrX 17035913 17035939 -145563991 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 423 200 11 67 chrX 17036099 17036189 -145563741 + MIR SINE MIR 7 91 -171 337 323 173 13 chrX 17036563 17036788 -145563142 + MIR SINE MIR 2 260 -2 320 175 311 0 chrX 17036948 17037051 -145562879 + MIR3 SINE MIR 46 180 -28 196 271 57 14 chrX 17037134 17037204 -145562726 - MER5A DNA MER1_type -10 179 107 629 188 214 16 chrX 17037205 17037397 -145562533 + MER33 DNA MER1_type 3 232 -92 1910 144 3 0 chrX 17037482 17037773 -145562157 + AluJb SINE Alu 1 292 -20 225 0 0 0 chrX 17037773 17037798 -145562132 + (TA)n Simple_repeat Simple_repeat 1 25 0 537 186 25 0 chrX 17037826 17037944 -145561986 + MER33 DNA MER1_type 243 363 0 227 294 50 22 chrX 17038962 17038997 -145560933 + L1MDa LINE L1 1910 1943 -4597 1084 138 0 126 chrX 17038997 17039050 -145560880 - MER6B DNA MER2_type -655 210 152 2061 123 3 0 chrX 17039050 17039358 -145560572 + AluSg SINE Alu 1 309 -1 1084 138 0 126 chrX 17039358 17039543 -145560387 - MER6B DNA MER2_type -713 152 2 227 294 50 22 chrX 17039543 17039687 -145560243 + L1MDa LINE L1 1943 2094 -4446 1879 123 7 10 chrX 17040439 17040740 -145559190 + AluSx SINE Alu 1 300 -12 227 195 0 0 chrX 17040839 17040880 -145559050 - MIR SINE MIR -54 208 168 349 277 42 8 chrX 17040883 17041002 -145558928 + MER94 DNA DNA 1 123 -11 577 258 50 31 chrX 17041013 17041172 -145558758 - MIR SINE MIR -92 170 9 1896 154 3 0 chrX 17041288 17041586 -145558344 + AluJb SINE Alu 1 299 -13 214 278 52 31 chrX 17041591 17041688 -145558242 + MIR SINE MIR 70 168 -94 1077 204 51 19 chrX 17041810 17042026 -145557904 - MER58A DNA MER1_type -1 223 1 668 303 31 31 chrX 17042039 17042293 -145557637 + L2 LINE L2 3060 3313 0 387 0 0 0 chrX 17042637 17042680 -145557250 + (TG)n Simple_repeat Simple_repeat 2 44 0 1989 138 0 0 chrX 17042954 17043251 -145556679 + AluJb SINE Alu 1 297 -15 594 206 122 69 chrX 17043415 17043604 -145556326 - LTR16C LTR ERVL -181 310 112 237 33 0 0 chrX 17043786 17043816 -145556114 + (TG)n Simple_repeat Simple_repeat 2 31 0 2263 81 0 3 chrX 17043938 17044234 -145555696 + AluSx SINE Alu 1 295 -17 365 242 191 38 chrX 17044419 17044576 -145555354 + MER5A DNA MER1_type 9 189 0 186 71 0 0 chrX 17044927 17044955 -145554975 + (T)n Simple_repeat Simple_repeat 1 28 0 2170 70 22 38 chrX 17045120 17045435 -145554495 + AluY SINE Alu 1 310 -1 471 152 63 0 chrX 17045486 17045565 -145554365 + AluJ/FLAM SINE Alu 1 84 -228 1405 256 109 10 chrX 17045681 17046202 -145553728 + L1ME3A LINE L1 5600 6167 -3 602 150 0 0 chrX 17046266 17046366 -145553564 + FLAM_A SINE Alu 43 142 0 317 239 0 102 chrX 17047389 17047477 -145552453 - L2 LINE L2 -2 3270 3192 2092 127 0 9 chrX 17047702 17048017 -145551913 + AluSx SINE Alu 1 312 0 1295 278 238 17 chrX 17048189 17049114 -145550816 - L2 LINE L2 -580 2734 1606 2230 245 70 66 chrX 17049135 17049364 -145550566 + L1MC4 LINE L1 6985 7211 -831 216 0 0 0 chrX 17049364 17049388 -145550542 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1738 145 3 7 chrX 17049391 17049673 -145550257 - AluJo SINE Alu -31 281 1 2230 245 70 66 chrX 17049673 17049967 -145549963 + L1MC4 LINE L1 7212 7503 -539 2189 91 0 34 chrX 17049967 17050287 -145549643 + AluSc SINE Alu 1 309 0 2230 245 70 66 chrX 17050287 17050401 -145549529 + L1MC4 LINE L1 7503 7615 -427 1949 91 0 0 chrX 17050401 17050653 -145549277 + AluSx SINE Alu 6 257 -55 189 0 0 0 chrX 17050656 17050677 -145549253 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2230 245 70 66 chrX 17050677 17051081 -145548849 + L1MC4 LINE L1 7616 8041 -1 2159 101 0 16 chrX 17051087 17051404 -145548526 + AluSx SINE Alu 1 312 0 344 345 8 25 chrX 17051614 17051733 -145548197 - L2 LINE L2 -1977 1337 1221 329 236 22 34 chrX 17051720 17051809 -145548121 - MER5B DNA MER1_type -90 88 1 * 1299 142 4 36 chrX 17051817 17052042 -145547888 - MER20 DNA MER1_type 0 219 2 1119 205 87 0 chrX 17052115 17052344 -145547586 + MIR SINE MIR 14 262 0 689 260 56 52 chrX 17052533 17052802 -145547128 - L2 LINE L2 0 3313 3044 989 127 20 0 chrX 17052980 17053130 -145546800 + AluSx SINE Alu 6 158 -154 610 97 0 43 chrX 17053130 17053223 -145546707 + AluJo/FRAM SINE Alu 207 295 -17 1703 160 3 17 chrX 17053228 17053528 -145546402 + AluJo SINE Alu 1 296 -16 1924 133 13 0 chrX 17053530 17053831 -145546099 + AluSx SINE Alu 3 307 -5 239 309 75 11 chrX 17053876 17053970 -145545960 - L2 LINE L2 -627 2687 2588 207 125 0 0 chrX 17055346 17055386 -145544544 + (T)n Simple_repeat Simple_repeat 1 40 0 326 194 0 117 chrX 17055597 17055648 -145544282 + MER103 DNA DNA 7 42 -124 2296 110 7 0 chrX 17055648 17055949 -145543981 - AluSx SINE Alu -9 303 1 326 194 0 117 chrX 17055949 17056000 -145543930 + MER103 DNA DNA 42 97 -69 543 228 0 2 chrX 17056011 17056156 -145543774 - MLT1I LTR MaLR 0 409 235 3880 179 56 13 chrX 17056178 17056948 -145542982 - L1ME2 LINE L1 -21 6143 5341 679 289 16 11 chrX 17056948 17057138 -145542792 - MLT1I LTR MaLR -162 247 57 2744 230 70 110 chrX 17057687 17058953 -145540977 + L1MC4a LINE L1 5692 6906 -902 908 159 0 37 chrX 17059097 17059260 -145540670 - AluJb SINE Alu -12 300 144 311 100 0 0 chrX 17059260 17059300 -145540630 - Alu SINE Alu -260 40 1 1115 265 55 11 chrX 17059300 17059647 -145540283 + L1MC4 LINE L1 7159 7520 -522 186 189 0 0 chrX 17059947 17059984 -145539946 + (TGGA)n Simple_repeat Simple_repeat 2 38 0 1862 221 98 113 chrX 17061030 17061907 -145538023 + MER45C DNA AcHobo 1 864 -89 671 178 0 0 chrX 17061933 17062040 -145537890 - FRAM SINE Alu -30 146 40 423 186 0 0 chrX 17062046 17062116 -145537814 + MER45C DNA AcHobo 882 951 -2 452 326 51 6 chrX 17063642 17063820 -145536110 - MIR SINE MIR -12 250 65 288 0 0 0 chrX 17064010 17064042 -145535888 + (CA)n Simple_repeat Simple_repeat 1 32 0 422 222 25 0 chrX 17064868 17064949 -145534981 + L2 LINE L2 3190 3272 0 1740 174 7 20 chrX 17064986 17065280 -145534650 - AluJo SINE Alu -21 291 2 799 208 53 5 chrX 17065315 17065522 -145534408 + L1M4 LINE L1 5132 5348 -798 234 214 0 0 chrX 17065524 17065566 -145534364 - AluJ/monomer SINE Alu -90 43 2 205 276 0 17 chrX 17065575 17065633 -145534297 - MIR SINE MIR -22 240 184 186 43 0 0 chrX 17066164 17066187 -145533743 + (T)n Simple_repeat Simple_repeat 1 23 0 256 253 23 0 chrX 17066250 17066337 -145533593 - L1M4 LINE L1 -2373 3773 3685 1575 44 0 6 chrX 17066350 17066533 -145533397 - L1PA4 LINE L1 0 6155 5974 1160 15 15 0 chrX 17066533 17066667 -145533263 + L1PA4 LINE L1 5828 5963 -192 1040 221 73 108 chrX 17067137 17067350 -145532580 - MLT1H1 LTR MaLR 0 555 336 2259 130 39 33 chrX 17067350 17067712 -145532218 + THE1B LTR MaLR 1 364 0 1040 221 73 108 chrX 17067712 17068073 -145531857 - MLT1H1 LTR MaLR -219 336 1 1720 115 8 28 chrX 17068452 17068732 -145531198 + AluSx SINE Alu 35 309 0 444 254 78 28 chrX 17068732 17068949 -145530981 - L1 LINE L1 -1818 4328 4101 1311 155 14 0 chrX 17068950 17069163 -145530767 + AluJo SINE Alu 86 301 -11 1122 261 76 43 chrX 17069179 17069708 -145530222 - L1 LINE L1 -2058 4088 3543 1333 254 57 30 chrX 17070005 17070536 -145529394 + L1PBa LINE L1 6 550 -6313 6249 140 20 14 chrX 17070646 17072272 -145527658 + L1PB1 LINE L1 4514 6150 -1 365 264 37 88 chrX 17072261 17072341 -145527589 + L1ME2 LINE L1 3259 3342 -2804 * 1753 95 0 0 chrX 17072341 17072563 -145527367 + AluSg/x SINE Alu 85 306 -6 365 264 37 88 chrX 17072563 17072777 -145527153 + L1ME2 LINE L1 3342 3538 -2608 1587 161 37 74 chrX 17072906 17073230 -145526700 - AluJo SINE Alu 0 312 1 2413 97 0 0 chrX 17073286 17073595 -145526335 + AluSg SINE Alu 1 309 -1 1570 237 78 58 chrX 17073631 17074349 -145525581 + L1ME2 LINE L1 5204 5951 -211 34 42 0 0 chrX 17074558 17074606 -145525324 + AT_rich Low_complexity Low_complexity 1 48 0 918 271 122 16 chrX 17074611 17075715 -145524215 + HAL1 LINE L1 1173 2474 -33 466 202 22 19 chrX 17075749 17075873 -145524057 + L1ME2 LINE L1 6040 6166 -4 347 231 54 97 chrX 17075912 17076098 -145523832 + L1MC4 LINE L1 7864 8041 -1 317 296 12 0 chrX 17076633 17076714 -145523216 - MIR SINE MIR -55 153 72 1974 157 36 22 chrX 17076943 17077300 -145522630 + L1MB5 LINE L1 5813 6174 0 523 219 22 15 chrX 17077300 17077437 -145522493 + L1MC4 LINE L1 7905 8042 0 523 89 9 107 chrX 17078177 17078289 -145521641 + L1MB2 LINE L1 6069 6169 -2 971 168 47 12 chrX 17078914 17079073 -145520857 + Charlie5 DNA MER1_type 34 186 -2399 2405 79 3 31 chrX 17079073 17079390 -145520540 - AluSx SINE Alu -4 308 1 971 168 47 12 chrX 17079390 17079471 -145520459 + Charlie5 DNA MER1_type 186 2585 0 282 321 38 19 chrX 17081635 17081741 -145518189 + MIR SINE MIR 126 233 -29 1064 152 0 18 chrX 17082426 17082597 -145517333 + FAM SINE Alu 1 168 -7 240 271 259 0 chrX 17082648 17082733 -145517197 + MIR SINE MIR 13 119 -143 283 290 40 24 chrX 17082750 17082876 -145517054 + MIR SINE MIR 56 146 -62 2229 94 0 0 chrX 17083239 17083547 -145516383 + AluSx SINE Alu 1 308 0 675 206 59 41 chrX 17083819 17083929 -145516001 + MER5B DNA MER1_type 2 118 -60 2306 117 3 0 chrX 17083929 17084237 -145515693 - AluSx SINE Alu -3 309 1 675 206 59 41 chrX 17084237 17084296 -145515634 + MER5B DNA MER1_type 118 174 -4 195 214 57 57 chrX 17084423 17084493 -145515437 - MIR3 SINE MIR -11 197 128 193 222 0 0 chrX 17084694 17084730 -145515200 - MIR SINE MIR -4 258 223 461 253 86 19 chrX 17086833 17086995 -145512935 + MIR SINE MIR 73 245 -17 187 377 30 36 chrX 17087070 17087237 -145512693 - L2 LINE L2 -108 3164 2999 892 295 99 18 chrX 17087246 17087639 -145512291 - LTR16C LTR ERVL -66 425 1 180 314 267 0 chrX 17087764 17087850 -145512080 + L2 LINE L2 3142 3250 -22 1004 262 20 12 chrX 17088115 17088367 -145511563 + MIR SINE MIR 6 259 -3 1826 145 34 3 chrX 17088377 17088674 -145511256 + AluJb SINE Alu 1 306 -6 210 128 0 0 chrX 17088680 17088719 -145511211 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 253 174 87 0 chrX 17088765 17088811 -145511119 - MER5A DNA MER1_type -139 50 1 181 303 202 9 chrX 17089050 17089159 -145510771 + MIR SINE MIR 17 146 -62 2281 91 17 3 chrX 17089238 17089536 -145510394 - AluSx SINE Alu -10 302 1 216 200 0 18 chrX 17089640 17089695 -145510235 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 1859 153 0 26 chrX 17089834 17090142 -145509788 - AluJb SINE Alu -2 310 11 5229 147 42 13 chrX 17090374 17090406 -145509524 + L1MB4 LINE L1 4822 4852 -1328 2644 62 113 0 chrX 17090406 17090742 -145509188 + MER51B LTR ERV1 1 374 -3 5229 147 42 13 chrX 17090742 17092031 -145507899 + L1MB4 LINE L1 4852 6180 0 703 146 127 0 chrX 17092593 17092703 -145507227 - FAM SINE Alu -16 169 46 234 50 0 0 chrX 17092743 17092783 -145507147 - Alu SINE Alu -1 302 263 2341 195 129 70 chrX 17092808 17093588 -145506342 + LTR1B LTR ERV1 1 826 0 301 213 80 0 chrX 17093695 17093770 -145506160 - L2 LINE L2 0 3313 3233 441 274 128 25 chrX 17094148 17094352 -145505578 + MIR SINE MIR 34 258 -4 288 0 0 0 chrX 17094356 17094388 -145505542 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 187 143 41 102 chrX 17094388 17094437 -145505493 - L2 LINE L2 -13 3300 3255 998 218 115 44 chrX 17094843 17095164 -145504766 + L1ME3A LINE L1 5827 6170 0 246 226 96 78 chrX 17095381 17095450 -145504480 - MIR3 SINE MIR -27 181 108 1705 81 41 0 chrX 17095450 17095671 -145504259 - MER30 DNA MER1_type 0 230 1 246 226 96 78 chrX 17095671 17095716 -145504214 - MIR3 SINE MIR -100 108 65 773 85 138 8 chrX 17096352 17096482 -145503448 + MSTB LTR MaLR 1 147 -279 765 126 71 0 chrX 17096482 17096609 -145503321 + MSTB LTR MaLR 293 428 0 308 244 12 49 chrX 17096831 17096913 -145503017 - MER91C DNA MER1_type -48 92 14 2042 125 17 7 chrX 17097636 17097924 -145502006 - AluJb SINE Alu -20 292 2 2429 84 0 3 chrX 17097948 17098259 -145501671 - AluSx SINE Alu -2 310 1 683 266 51 79 chrX 17098421 17098721 -145501209 + L1MEd LINE L1 1153 1472 -4924 2207 118 0 9 chrX 17098721 17099036 -145500894 + AluSx SINE Alu 1 312 0 683 266 51 79 chrX 17099036 17099235 -145500695 + L1MEd LINE L1 1472 1675 -4721 646 291 16 51 chrX 17099584 17099838 -145500092 - MER115 DNA AcHobo -447 246 2 2112 126 3 0 chrX 17099881 17100175 -145499755 + AluSx SINE Alu 2 296 -16 2617 251 96 35 chrX 17100507 17100608 -145499322 + L1MEd LINE L1 2135 2228 -3987 2165 98 3 54 chrX 17100608 17100925 -145499005 + AluSq SINE Alu 1 301 -12 2617 251 96 35 chrX 17100925 17101665 -145498265 + L1MEd LINE L1 2228 2921 -3294 1739 148 16 23 chrX 17101665 17101975 -145497955 + AluJb SINE Alu 5 312 0 2617 251 96 35 chrX 17101975 17102689 -145497241 + L1MEd LINE L1 2921 3746 -2469 2415 80 3 0 chrX 17103297 17103598 -145496332 - AluSq SINE Alu -11 302 1 658 274 42 9 chrX 17103792 17104004 -145495926 + MIR SINE MIR 2 220 -42 1117 135 0 0 chrX 17104095 17104251 -145495679 - AluJb SINE Alu -23 289 134 335 297 17 42 chrX 17104323 17104441 -145495489 - L2 LINE L2 0 3313 3199 218 207 35 35 chrX 17104940 17104998 -145494932 + MIR SINE MIR 53 110 -152 2055 142 7 0 chrX 17105182 17105529 -145494401 + AluJo SINE Alu 1 349 0 244 0 0 0 chrX 17106385 17106412 -145493518 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 2111 101 0 54 chrX 17106412 17106709 -145493221 - AluSx SINE Alu -31 281 1 4108 62 14 29 chrX 17107321 17107873 -145492057 + L1PA10 LINE L1 5622 6165 -3 600 313 78 15 chrX 17108275 17108682 -145491248 + L1ME4a LINE L1 5473 5907 -214 1870 164 0 7 chrX 17108725 17109018 -145490912 - AluJo SINE Alu -21 291 1 21 0 0 0 chrX 17109868 17109889 -145490041 + AT_rich Low_complexity Low_complexity 1 21 0 294 321 100 61 chrX 17110761 17110810 -145489120 - L2 LINE L2 -2 3270 3224 326 213 25 0 chrX 17110810 17110890 -145489040 + MER91A DNA MER1_type 1 82 -114 294 321 100 61 chrX 17110890 17111091 -145488839 - L2 LINE L2 -48 3224 2928 258 304 20 20 chrX 17111320 17111422 -145488508 + CT-rich Low_complexity Low_complexity 5 106 0 1627 158 91 0 chrX 17112001 17112286 -145487644 - AluJb SINE Alu -1 311 1 1330 59 0 0 chrX 17112801 17112970 -145486960 + L1PA13 LINE L1 5993 6161 -2 990 220 87 25 chrX 17113195 17113472 -145486458 + MLT1H LTR MaLR 256 549 0 291 263 0 25 chrX 17113472 17113552 -145486378 + CT-rich Low_complexity Low_complexity 4 81 0 606 358 23 18 chrX 17114466 17114900 -145485030 - L2 LINE L2 -208 3064 2626 405 0 0 0 chrX 17115009 17115054 -145484876 + (CA)n Simple_repeat Simple_repeat 1 45 0 1189 219 5 0 chrX 17115135 17115350 -145484580 - MER58A DNA MER1_type 0 224 9 226 333 67 7 chrX 17115359 17115509 -145484421 - L2 LINE L2 -678 2636 2478 279 288 220 0 chrX 17116661 17116838 -145483092 + L2 LINE L2 1768 1983 -1331 1583 90 82 23 chrX 17117330 17117419 -145482511 + L1PB4 LINE L1 5698 5780 -376 324 0 0 0 chrX 17117419 17117455 -145482475 + (CA)n Simple_repeat Simple_repeat 2 37 0 1583 90 82 23 chrX 17117455 17117621 -145482309 + L1PB4 LINE L1 5780 5968 -188 1025 138 31 41 chrX 17117683 17117878 -145482052 + L1PB4 LINE L1 5951 6143 -13 1898 140 0 29 chrX 17119246 17119553 -145480377 + AluJo SINE Alu 1 298 -14 2372 99 0 3 chrX 17119643 17119945 -145479985 + AluSx SINE Alu 1 301 -11 321 368 19 0 chrX 17120277 17120432 -145479498 + MIR SINE MIR 101 258 -4 2260 102 3 0 chrX 17120744 17121037 -145478893 + AluSx SINE Alu 1 294 -18 463 292 8 0 chrX 17121280 17121400 -145478530 - L2 LINE L2 -7 3265 3145 21 36 0 0 chrX 17122012 17122040 -145477890 + AT_rich Low_complexity Low_complexity 1 28 0 223 175 0 79 chrX 17122919 17122982 -145476948 - L2 LINE L2 -85 3228 3171 1088 214 42 5 chrX 17123979 17124194 -145475736 - MER58A DNA MER1_type 0 224 2 2042 146 0 0 chrX 17124288 17124582 -145475348 + AluJb SINE Alu 1 294 -18 265 293 67 27 chrX 17124668 17124818 -145475112 + L2 LINE L2 3124 3279 -34 2518 55 0 0 chrX 17126000 17126292 -145473638 + AluY SINE Alu 3 294 -17 1107 261 160 35 chrX 17126399 17127055 -145472875 + L1ME4a LINE L1 5384 6121 0 333 0 0 0 chrX 17127962 17127999 -145471931 + (CA)n Simple_repeat Simple_repeat 2 38 0 651 232 85 49 chrX 17130351 17130575 -145469355 - MIR SINE MIR 0 262 31 215 218 36 0 chrX 17130577 17130632 -145469298 + MIR SINE MIR 82 138 -124 287 301 10 10 chrX 17130915 17131018 -145468912 + MIR3 SINE MIR 81 183 -25 288 285 114 47 chrX 17131604 17131797 -145468133 + L1MA9 LINE L1 6077 6282 -30 427 265 96 0 chrX 17132145 17132311 -145467619 - L1ME4a LINE L1 -5 6116 5935 220 234 0 0 chrX 17132312 17132359 -145467571 + (TA)n Simple_repeat Simple_repeat 2 48 0 622 278 70 22 chrX 17132360 17132774 -145467156 - L1ME4a LINE L1 -158 5963 5480 1887 129 17 27 chrX 17133163 17133458 -145466472 - AluJb SINE Alu -20 292 1 2267 113 0 0 chrX 17134055 17134348 -145465582 + AluSx SINE Alu 1 293 -19 1600 217 179 50 chrX 17135331 17135885 -145464045 - MLT1E2 LTR MaLR -1 625 1 569 133 7 119 chrX 17136260 17136403 -145463527 + MLT1D LTR MaLR 88 214 -291 343 301 17 40 chrX 17136408 17136581 -145463349 - MIR SINE MIR -88 174 6 204 97 0 0 chrX 17136636 17136667 -145463263 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2334 71 0 0 chrX 17136671 17136952 -145462978 - AluSx SINE Alu -31 281 1 1396 186 84 11 chrX 17137223 17137508 -145462422 - AluJo SINE Alu -6 306 1 323 261 0 0 chrX 17137523 17137611 -145462319 + Charlie8 DNA MER1_type 73 160 -2257 986 224 95 81 chrX 17137939 17138372 -145461558 - LTR33A LTR ERVL -84 439 1 393 192 20 139 chrX 17138567 17138718 -145461212 + LTR16C LTR ERVL 310 442 -49 653 192 171 5 chrX 17139653 17139846 -145460084 - MIR SINE MIR -5 257 33 814 257 66 7 chrX 17140354 17140626 -145459304 + L2 LINE L2 2830 3117 -196 393 167 0 13 chrX 17140680 17140758 -145459172 + MER96 DNA MER1_type? 99 175 0 186 71 0 0 chrX 17140773 17140801 -145459129 + (T)n Simple_repeat Simple_repeat 1 28 0 357 191 0 15 chrX 17140808 17140876 -145459054 - MER106B DNA MER1_type -992 67 1 1405 80 144 0 chrX 17140883 17141084 -145458846 - MER30 DNA MER1_type 0 230 1 762 251 136 23 chrX 17141387 17141741 -145458189 - LTR16C LTR ERVL -2 489 96 332 201 117 145 chrX 17141895 17141949 -145457981 - MER5B DNA MER1_type -4 174 120 731 179 0 0 chrX 17141949 17142072 -145457858 + FLAM_A SINE Alu 1 123 -10 332 201 117 145 chrX 17142072 17142196 -145457734 - MER5B DNA MER1_type -58 120 1 1433 136 0 49 chrX 17142428 17142736 -145457194 - AluY SINE Alu -18 293 1 1538 246 170 21 chrX 17142818 17143335 -145456595 + MLT1G1 LTR MaLR 2 595 0 224 252 55 20 chrX 17143443 17143574 -145456356 - MIR SINE MIR -76 186 4 251 200 26 9 chrX 17143909 17144024 -145455906 + (TA)n Simple_repeat Simple_repeat 1 117 0 952 157 0 61 chrX 17144026 17144058 -145455872 - L1MB3 LINE L1 -19 6164 6132 2260 104 0 17 chrX 17144058 17144357 -145455573 - AluSx SINE Alu -18 294 1 952 157 0 61 chrX 17144357 17144521 -145455409 - L1MB3 LINE L1 -51 6132 5980 601 208 17 67 chrX 17144833 17145011 -145454919 + MIR SINE MIR 2 170 -92 2379 128 11 19 chrX 17145079 17145446 -145454484 - THE1B LTR MaLR 0 364 1 285 268 45 18 chrX 17145794 17145906 -145454024 - L1ME4a LINE L1 -1 6120 6006 1903 241 32 27 chrX 17146051 17146603 -145453327 + MLT2F LTR ERVL 1 604 -59 393 22 0 0 chrX 17146603 17146649 -145453281 + (TG)n Simple_repeat Simple_repeat 1 46 0 1903 241 32 27 chrX 17146649 17146710 -145453220 + MLT2F LTR ERVL 604 663 0 453 213 71 71 chrX 17146717 17146914 -145453016 + MER3 DNA MER1_type 13 209 0 * 1090 133 51 41 chrX 17146757 17146952 -145452978 - MER3 DNA MER1_type 0 209 13 1195 142 35 52 chrX 17147041 17147093 -145452837 - MLT1J2 LTR MaLR -222 228 177 2287 109 0 13 chrX 17147093 17147396 -145452534 - AluSx SINE Alu -13 299 1 1195 142 35 52 chrX 17147396 17147575 -145452355 - MLT1J2 LTR MaLR -273 177 1 297 209 220 11 chrX 17148254 17148345 -145451585 + MIR SINE MIR 41 150 -112 247 263 0 53 chrX 17148690 17148766 -145451164 - MIR3 SINE MIR -29 179 108 1863 153 10 16 chrX 17148917 17149225 -145450705 + AluJo SINE Alu 1 306 -6 319 305 0 25 chrX 17149398 17149516 -145450414 - MIR3 SINE MIR -7 201 87 * 361 178 168 19 chrX 17149512 17149619 -145450311 - L2 LINE L2 -1 3312 3190 1366 250 77 23 chrX 17151050 17151442 -145448488 + LTR16C LTR ERVL 79 491 0 2244 127 33 30 chrX 17151469 17151831 -145448099 - THE1B LTR MaLR -1 363 1 238 294 86 49 chrX 17153306 17153469 -145446461 - MIR SINE MIR -70 192 24 537 289 19 38 chrX 17153529 17153740 -145446190 + L1ME LINE L1 5521 5727 -394 1956 169 66 6 chrX 17155690 17156040 -145443890 + MLT1B LTR MaLR 17 387 -3 223 195 26 39 chrX 17156065 17156142 -145443788 + L2 LINE L2 146 221 -3093 615 201 34 126 chrX 17156147 17156410 -145443520 - MER112 DNA MER1_type -21 239 1 408 323 66 0 chrX 17156537 17156704 -145443226 + Tigger8 DNA MER2_type 318 495 -171 247 138 0 108 chrX 17156753 17156818 -145443112 - HsTC2 DNA Tc2 -15 1883 1826 693 187 216 0 chrX 17156829 17157000 -145442930 - MER3 DNA MER1_type -1 208 1 418 214 192 11 chrX 17157217 17157399 -145442531 - MIR SINE MIR 0 262 48 2101 143 0 3 chrX 17157766 17158074 -145441856 + AluJo SINE Alu 1 307 -5 25 51 0 0 chrX 17158412 17158451 -145441479 + AT_rich Low_complexity Low_complexity 1 39 0 2511 93 0 0 chrX 17158546 17158859 -145441071 + AluSq SINE Alu 1 313 0 1855 148 3 7 chrX 17158977 17159267 -145440663 + AluSx SINE Alu 1 289 -23 241 296 59 0 chrX 17159291 17159426 -145440504 + L1ME4a LINE L1 2202 2344 -3802 652 271 51 20 chrX 17159839 17160131 -145439799 + L1ME4a LINE L1 5535 5835 -286 941 160 0 0 chrX 17160140 17160290 -145439640 + AluSg/x SINE Alu 157 306 -6 330 232 112 48 chrX 17160409 17160534 -145439396 + L1ME4a LINE L1 5988 6120 -1 2406 57 0 23 chrX 17160742 17161043 -145438887 - AluY SINE Alu -17 294 1 2000 248 38 4 chrX 17161478 17161950 -145437980 - LTR16C LTR ERVL 0 491 4 443 312 125 30 chrX 17161973 17162444 -145437486 + L2 LINE L2 1968 2483 -831 533 190 68 68 chrX 17162722 17162885 -145437045 - MLT1J LTR MaLR -3 508 346 1633 121 0 28 chrX 17163031 17163280 -145436650 - AluSg/x SINE Alu -5 307 66 744 115 0 0 chrX 17164273 17164386 -145435544 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 924 258 24 16 chrX 17165160 17165412 -145434518 - MIR SINE MIR -4 258 5 241 212 341 12 chrX 17165530 17165615 -145434315 + L2 LINE L2 3138 3250 -22 559 192 0 0 chrX 17165633 17165737 -145434193 + MER96B DNA MER1_type? 1 104 -313 2335 100 0 0 chrX 17165737 17166028 -145433902 - AluSq SINE Alu -22 291 1 219 182 0 0 chrX 17166746 17166790 -145433140 - L2 LINE L2 0 3272 3229 2051 145 34 8 chrX 17166808 17167159 -145432771 + MLT1A1 LTR MaLR 6 365 0 201 213 21 0 chrX 17167907 17167954 -145431976 + (TA)n Simple_repeat Simple_repeat 2 49 0 221 351 47 27 chrX 17168579 17168727 -145431203 - L2 LINE L2 -291 2981 2831 2019 134 0 0 chrX 17168981 17169294 -145430636 - AluJb SINE Alu 0 313 1 267 228 18 0 chrX 17169664 17169721 -145430209 + L2 LINE L2 3254 3311 -2 1808 194 118 37 chrX 17169754 17170066 -145429864 - MLT1F1 LTR MaLR 0 567 191 369 0 0 0 chrX 17170066 17170107 -145429823 + (ATG)n Simple_repeat Simple_repeat 3 43 0 1808 194 118 37 chrX 17170107 17170315 -145429615 - MLT1F1 LTR MaLR -376 191 1 430 248 183 7 chrX 17171821 17171974 -145427956 - MER5A DNA MER1_type -1 188 9 494 248 163 15 chrX 17173039 17173241 -145426689 + MIR SINE MIR 31 262 0 2053 120 13 28 chrX 17173662 17173979 -145425951 + AluSx SINE Alu 1 312 0 251 135 58 0 chrX 17174322 17174374 -145425556 - L2 LINE L2 -1 3312 3258 2366 101 99 3 chrX 17174852 17175197 -145424733 - MER83B LTR ERV1 0 378 1 990 113 0 0 chrX 17176493 17176652 -145423278 - AluSg/x SINE Alu 0 317 159 1758 84 0 5 chrX 17176653 17176867 -145423063 - AluSx SINE Alu -99 213 1 22 35 0 0 chrX 17176996 17177025 -145422905 + AT_rich Low_complexity Low_complexity 1 29 0 405 297 8 16 chrX 17177172 17177321 -145422609 - MER5A DNA MER1_type -35 143 7 2403 77 0 0 chrX 17177736 17178021 -145421909 - AluSc SINE Alu -24 285 1 1949 147 0 26 chrX 17178615 17178921 -145421009 - AluJo SINE Alu -14 298 1 405 119 32 82 chrX 17179074 17179192 -145420738 + MLT1J2 LTR MaLR 286 450 0 1903 110 20 14 chrX 17179884 17180176 -145419754 - AluSg SINE Alu -16 294 1 33 56 0 0 chrX 17180464 17180518 -145419412 + GC_rich Low_complexity Low_complexity 1 54 0 363 241 15 30 chrX 17180559 17180692 -145419238 + G-rich Low_complexity Low_complexity 5 135 0 235 221 53 84 chrX 17181179 17181274 -145418656 - MIR3 SINE MIR -3 205 114 1694 236 47 9 chrX 17181932 17182376 -145417554 + L1ME3A LINE L1 5523 5983 -187 269 152 0 0 chrX 17182441 17182487 -145417443 + L1ME3A LINE L1 6122 6167 -3 849 161 0 54 chrX 17182598 17182747 -145417183 + AluJo SINE Alu 34 174 -138 585 221 46 0 chrX 17182751 17182882 -145417048 - L1MC/D LINE L1 -2322 5720 5584 1082 172 0 0 chrX 17182885 17183059 -145416871 + FRAM SINE Alu 1 174 -2 2240 114 3 10 chrX 17183757 17184064 -145415866 + AluJb SINE Alu 1 305 -7 492 195 24 41 chrX 17184175 17184298 -145415632 - MIR SINE MIR -125 137 17 231 328 82 45 chrX 17184312 17184446 -145415484 + MIR3 SINE MIR 3 141 -67 207 295 105 11 chrX 17184728 17184765 -145415165 - L2 LINE L2 0 3272 3240 1185 245 39 48 chrX 17184765 17184842 -145415088 - MLT1I LTR MaLR -1 408 332 1932 118 41 0 chrX 17184842 17185147 -145414783 - AluSx SINE Alu 0 316 1 1185 245 39 48 chrX 17185147 17185480 -145414450 - MLT1I LTR MaLR -77 332 1 207 295 105 11 chrX 17185480 17185537 -145414393 - L2 LINE L2 -32 3240 3169 1753 189 142 3 chrX 17186355 17186544 -145413386 - L1MD3 LINE L1 -735 7260 7099 180 77 0 0 chrX 17186544 17186570 -145413360 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1753 189 142 3 chrX 17186570 17186767 -145413163 - L1MD3 LINE L1 -896 7099 6820 2194 126 7 0 chrX 17186820 17187238 -145412692 - AluSx SINE Alu 0 420 1 260 278 31 0 chrX 17187467 17187564 -145412366 - MLT1L LTR MaLR -7 608 509 300 223 45 55 chrX 17187761 17187862 -145412068 - MLT1K LTR MaLR -342 246 147 235 135 0 0 chrX 17187867 17187904 -145412026 - MLT1L LTR MaLR -421 194 158 852 153 5 104 chrX 17187914 17188054 -145411876 - MER5A DNA MER1_type 0 189 73 2320 97 3 3 chrX 17188054 17188363 -145411567 - AluSx SINE Alu -3 309 1 852 153 5 104 chrX 17188363 17188424 -145411506 - MER5A DNA MER1_type -116 73 8 2052 149 51 9 chrX 17188519 17188869 -145411061 + MLT1A1 LTR MaLR 1 365 0 487 236 221 0 chrX 17188902 17189042 -145410888 - MER5A DNA MER1_type -9 180 10 278 247 62 0 chrX 17189343 17189424 -145410506 - MLT1I LTR MaLR 0 409 324 455 250 50 20 chrX 17189479 17189654 -145410276 - MLT1J1 LTR MaLR -173 236 66 2213 134 0 6 chrX 17189709 17190023 -145409907 - AluJb SINE Alu 0 312 1 468 231 43 129 chrX 17190126 17190321 -145409609 + L2 LINE L2 3037 3198 -115 2329 104 10 0 chrX 17190321 17190630 -145409300 - AluSx SINE Alu 0 312 1 468 231 43 129 chrX 17190630 17190737 -145409193 + L2 LINE L2 3198 3313 0 367 288 7 36 chrX 17191646 17191731 -145408199 + MIR3 SINE MIR 72 153 -55 1013 188 16 0 chrX 17191731 17191917 -145408013 - MER5A DNA MER1_type 0 189 1 367 288 7 36 chrX 17191917 17191970 -145407960 + MIR3 SINE MIR 153 206 -2 748 273 113 69 chrX 17191977 17192046 -145407884 - MLT1K LTR MaLR -6 582 517 1702 154 4 0 chrX 17192046 17192293 -145407637 + AluJo SINE Alu 1 248 -64 180 0 0 0 chrX 17192301 17192321 -145407609 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 748 273 113 69 chrX 17192321 17192674 -145407256 - MLT1K LTR MaLR -77 511 132 338 224 145 0 chrX 17192724 17192800 -145407130 + L2 LINE L2 3225 3311 -2 201 39 0 0 chrX 17193272 17193298 -145406632 + (T)n Simple_repeat Simple_repeat 1 26 0 222 269 0 0 chrX 17193315 17193367 -145406563 + MIR3 SINE MIR 109 160 -48 727 211 72 6 chrX 17193367 17193533 -145406397 - MER5B DNA MER1_type 0 178 2 356 218 73 27 chrX 17193582 17193692 -145406238 + MIR SINE MIR 86 200 -62 200 249 0 33 chrX 17193702 17193774 -145406156 + MER5A DNA MER1_type 4 74 -115 1706 159 0 72 chrX 17193775 17194096 -145405834 + AluJb SINE Alu 1 298 -14 518 145 3 3 chrX 17194109 17194214 -145405716 + L1MB7 LINE L1 5723 5827 -357 452 273 149 7 chrX 17194539 17194693 -145405237 + MER5A DNA MER1_type 14 189 0 1616 54 0 10 chrX 17194822 17195026 -145404904 - L1PA5 LINE L1 -4 6150 5949 2461 81 0 0 chrX 17195568 17195864 -145404066 + AluSp SINE Alu 1 296 -17 381 211 0 44 chrX 17196164 17196254 -145403676 + MER20 DNA MER1_type 1 86 -133 2088 120 7 7 chrX 17196298 17196597 -145403333 - AluSx SINE Alu -13 299 1 31 68 0 0 chrX 17196686 17196745 -145403185 + AT_rich Low_complexity Low_complexity 1 59 0 185 93 53 40 chrX 17196745 17196820 -145403110 + (TA)n Simple_repeat Simple_repeat 1 76 0 348 286 80 0 chrX 17196931 17197043 -145402887 - L2 LINE L2 0 3272 3152 343 211 9 18 chrX 17197074 17197183 -145402747 - L1MC4 LINE L1 -1339 6983 2006 2223 105 3 3 chrX 17197189 17197485 -145402445 - AluSx SINE Alu -16 296 1 1074 238 33 26 chrX 17197709 17197982 -145401948 - MLT1J1 LTR MaLR -165 281 7 7348 198 96 22 chrX 17198197 17198811 -145401119 + L1MB7 LINE L1 3124 3691 -2455 2259 123 7 0 chrX 17198811 17199119 -145400811 + AluSx SINE Alu 1 310 -2 7348 198 96 22 chrX 17199119 17199358 -145400572 + L1MB7 LINE L1 3691 3911 -2235 1529 106 0 38 chrX 17199358 17199595 -145400335 - AluSg/x SINE Alu -4 308 81 7348 198 96 22 chrX 17199595 17200606 -145399324 + L1MB7 LINE L1 3911 5127 -1019 * 43883 31 22 1 chrX 17200600 17206628 -145393302 + L1PA2 LINE L1 1 6155 0 3265 150 25 12 chrX 17206633 17207304 -145392626 + L1MB7 LINE L1 5106 5785 -399 1832 165 7 20 chrX 17207304 17207607 -145392323 + AluJb SINE Alu 1 299 -13 3265 150 25 12 chrX 17207607 17207651 -145392279 + L1MB7 LINE L1 5785 5827 -357 2375 97 0 0 chrX 17208113 17208421 -145391509 - AluSc SINE Alu -1 308 1 333 271 93 70 chrX 17208687 17208800 -145391130 - L2 LINE L2 0 3272 3154 1321 163 0 41 chrX 17208800 17209046 -145390884 - MER106A DNA MER1_type 0 236 1 333 271 93 70 chrX 17209046 17209061 -145390869 - L2 LINE L2 -118 3154 3141 203 204 41 0 chrX 17209244 17209293 -145390637 + CT-rich Low_complexity Low_complexity 1 51 0 1201 230 59 64 chrX 17209574 17209979 -145389951 + MLT1J LTR MaLR 101 503 -8 1998 146 7 3 chrX 17210321 17210616 -145389314 + AluJo SINE Alu 1 296 -16 2046 152 0 0 chrX 17211164 17211473 -145388457 - AluSx SINE Alu -3 309 1 2400 132 42 20 chrX 17211977 17212333 -145387597 + THE1B LTR MaLR 1 364 0 1224 265 49 32 chrX 17212473 17212881 -145387049 - LTR33 LTR ERVL -6 515 101 2293 103 7 0 chrX 17212937 17213237 -145386693 + AluSq SINE Alu 1 302 -11 2064 122 0 11 chrX 17213302 17213622 -145386308 + AluSp SINE Alu 1 317 0 347 339 0 0 chrX 17213623 17213732 -145386198 + MIR SINE MIR 154 262 0 1233 106 0 0 chrX 17214769 17214930 -145385000 - AluSg/x SINE Alu -10 300 140 968 118 0 15 chrX 17214933 17215069 -145384861 + AluSg SINE Alu 1 134 -176 1861 142 33 20 chrX 17215069 17215372 -145384558 + AluSx SINE Alu 1 307 -5 190 373 60 15 chrX 17265611 17265745 -145334185 - L2 LINE L2 0 3272 3133 655 215 126 37 chrX 17266359 17266573 -145333357 + Charlie1b DNA MER1_type 10 242 -281 369 250 12 12 chrX 17266725 17266809 -145333121 + Tigger2 DNA MER2_type 2632 2715 -3 858 161 57 43 chrX 17266865 17267076 -145332854 - L1MB4 LINE L1 -210 5970 5757 1403 197 91 18 chrX 17267086 17267426 -145332504 + MLT1A1 LTR MaLR 1 365 0 261 299 72 0 chrX 17268093 17268190 -145331740 - MIR SINE MIR -21 241 138 216 182 0 0 chrX 17269522 17269566 -145330364 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2289 138 24 29 chrX 17269722 17270095 -145329835 - L1MB5 LINE L1 -216 5958 5586 1279 205 107 60 chrX 17270095 17270442 -145329488 + MLT1A1 LTR MaLR 3 365 0 2289 138 24 29 chrX 17270442 17270487 -145329443 - L1MB5 LINE L1 -588 5586 5542 530 292 152 14 chrX 17270969 17271246 -145328684 - L2 LINE L2 -1006 2308 1994 1573 165 96 38 chrX 17272353 17272698 -145327232 - MLT1A1 LTR MaLR 0 365 1 376 177 62 21 chrX 17273178 17273274 -145326656 + L1ME1 LINE L1 5792 5891 -275 1519 174 14 11 chrX 17273278 17273554 -145326376 + AluJb SINE Alu 7 283 -29 2316 90 17 3 chrX 17274018 17274319 -145325611 - AluSc SINE Alu -2 307 3 1038 109 0 34 chrX 17274320 17274467 -145325463 - AluSq/x SINE Alu -170 142 1 184 264 75 0 chrX 17274487 17274540 -145325390 + MIR SINE MIR 87 143 -65 835 111 24 0 chrX 17277056 17277182 -145322748 - AluSg/x SINE Alu -15 294 166 1604 114 5 0 chrX 17277283 17277503 -145322427 - AluSx SINE Alu -90 222 2 3913 92 76 26 chrX 17277639 17278001 -145321929 - MER39B LTR ERV1 -4 649 307 2198 98 0 23 chrX 17278001 17278307 -145321623 - AluSx SINE Alu -13 299 1 2195 98 27 0 chrX 17278314 17278610 -145321320 - AluSp SINE Alu -9 304 1 3913 92 76 26 chrX 17278610 17278857 -145321073 - MER39B LTR ERV1 -351 302 1 358 239 123 29 chrX 17278979 17279195 -145320735 + MIR SINE MIR 24 254 -8 1793 98 12 8 chrX 17279274 17279528 -145320402 + AluSx SINE Alu 1 255 -57 2213 96 16 19 chrX 17279981 17280294 -145319636 + AluSx SINE Alu 1 312 0 189 238 24 0 chrX 17281815 17281857 -145318073 + MIR SINE MIR 107 149 -113 1232 122 0 0 chrX 17282033 17282197 -145317733 + AluSg/x SINE Alu 133 296 -16 265 191 62 25 chrX 17282249 17282411 -145317519 + (TA)n Simple_repeat Simple_repeat 1 168 0 2170 252 65 13 chrX 17282531 17283146 -145316784 - L1MC4a LINE L1 -1883 5925 5279 1244 166 12 95 chrX 17283692 17283891 -145316039 - AluJb SINE Alu 0 312 151 1844 94 97 4 chrX 17283891 17284158 -145315772 - AluSg SINE Alu -16 294 3 1244 166 12 95 chrX 17284158 17284296 -145315634 - AluJb SINE Alu -161 151 3 241 210 32 0 chrX 17284301 17284363 -145315567 - AluJ/monomer SINE Alu 0 300 237 471 181 9 67 chrX 17284570 17284675 -145315255 - Tigger7 DNA MER2_type -1 2586 2488 * 1452 183 28 0 chrX 17284672 17284924 -145315006 - Tigger7 DNA MER2_type -2220 267 9 521 157 36 121 chrX 17285050 17285093 -145314837 - MER5A DNA MER1_type -3 186 141 1898 159 7 0 chrX 17285093 17285388 -145314542 - AluJb SINE Alu -15 297 1 521 157 36 121 chrX 17285388 17285484 -145314446 - MER5A DNA MER1_type -48 141 59 18543 38 2 4 chrX 17285726 17287975 -145311955 + L1P LINE L1 2679 4924 -1222 418 271 115 66 chrX 17288128 17288588 -145311342 + L2 LINE L2 2750 3295 -18 2556 60 0 0 chrX 17288754 17289052 -145310878 - AluSc SINE Alu -11 298 1 3077 157 68 28 chrX 17289064 17289186 -145310744 - L1MB8 LINE L1 0 6178 6062 2540 113 16 34 chrX 17289186 17289568 -145310362 + THE1C LTR MaLR 1 375 0 3077 157 68 28 chrX 17289568 17290050 -145309880 - L1MB8 LINE L1 -116 6062 5550 201 74 0 0 chrX 17290206 17290233 -145309697 + (A)n Simple_repeat Simple_repeat 1 27 0 622 205 6 66 chrX 17290349 17290515 -145309415 + MER3 DNA MER1_type 13 168 -41 392 173 233 33 chrX 17290819 17290969 -145308961 + LTR50 LTR ERVL 36 215 -580 433 213 287 22 chrX 17291054 17291284 -145308646 + LTR50 LTR ERVL 505 795 0 4297 151 11 27 chrX 17291461 17292244 -145307686 + L1MA3 LINE L1 5161 5932 -373 189 0 0 0 chrX 17292244 17292265 -145307665 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4297 151 11 27 chrX 17292265 17292338 -145307592 + L1MA3 LINE L1 5932 6005 -300 4790 191 48 33 chrX 17292447 17292564 -145307366 - L1MB8 LINE L1 -646 5532 5418 2191 107 11 0 chrX 17292564 17292886 -145307044 - AluSx SINE Alu 0 325 1 4790 191 48 33 chrX 17292886 17294007 -145305923 - L1MB8 LINE L1 -760 5418 4285 2255 131 0 0 chrX 17294049 17294361 -145305569 - AluSx SINE Alu 0 312 1 449 285 28 34 chrX 17294464 17294643 -145305287 - HAL1b LINE L1 -812 536 359 1992 204 48 12 chrX 17295022 17295443 -145304487 + MER63B DNA MER1_type 1 436 0 23 0 0 0 chrX 17295494 17295517 -145304413 + AT_rich Low_complexity Low_complexity 1 23 0 1354 238 92 44 chrX 17296616 17297070 -145302860 - MLT1K LTR MaLR 0 476 1 626 256 94 8 chrX 17298031 17298285 -145301645 - L1ME LINE L1 -601 5563 5288 261 0 0 0 chrX 17298333 17298362 -145301568 + (CA)n Simple_repeat Simple_repeat 2 30 0 311 280 98 81 chrX 17298575 17299046 -145300884 - L1MB8 LINE L1 -1944 4202 3724 22 35 0 0 chrX 17299119 17299148 -145300782 + AT_rich Low_complexity Low_complexity 1 29 0 13959 72 4 1 chrX 17299217 17301007 -145298923 + L1P LINE L1 7 1801 -4345 2061 142 0 3 chrX 17301155 17301464 -145298466 - AluJo SINE Alu -2 310 3 1151 290 129 19 chrX 17302105 17302384 -145297546 - L2 LINE L2 -1 3312 3065 1834 134 42 0 chrX 17302384 17302674 -145297256 + AluJb SINE Alu 11 311 0 1151 290 129 19 chrX 17302674 17303035 -145296895 - L2 LINE L2 -248 3065 2594 251 208 167 0 chrX 17303367 17303439 -145296491 - MIR SINE MIR -102 160 77 439 217 43 0 chrX 17303986 17304078 -145295852 + MIR SINE MIR 97 192 -70 2911 82 5 14 chrX 17304173 17304540 -145295390 - THE1B LTR MaLR 0 364 1 1945 88 92 0 chrX 17305031 17305303 -145294627 + L1PA13 LINE L1 5867 6163 0 2461 68 0 40 chrX 17305547 17305871 -145294059 - AluY SINE Alu 0 311 1 2207 112 0 3 chrX 17305873 17306176 -145293754 - AluSx SINE Alu -10 302 1 1595 171 4 11 chrX 17306480 17306761 -145293169 + AluJo SINE Alu 24 302 -10 862 116 0 0 chrX 17307264 17307376 -145292554 + FLAM_C SINE Alu 14 125 -18 258 306 82 41 chrX 17307436 17307583 -145292347 + L1MC4 LINE L1 6460 6612 -1430 273 57 0 0 chrX 17307598 17307633 -145292297 + (CA)n Simple_repeat Simple_repeat 2 36 0 1791 175 3 0 chrX 17307637 17307928 -145292002 + AluJb SINE Alu 1 292 -20 21 0 0 0 chrX 17308380 17308401 -145291529 + AT_rich Low_complexity Low_complexity 1 21 0 934 247 94 65 chrX 17308421 17308911 -145291019 + L1ME4a LINE L1 5513 6016 -105 1249 126 143 116 chrX 17309773 17309869 -145290061 + AluJb SINE Alu 2 94 -208 2080 117 0 0 chrX 17309869 17310159 -145289771 + AluSx SINE Alu 1 290 -22 1249 126 143 116 chrX 17310159 17310355 -145289575 + AluJb SINE Alu 94 302 0 397 213 276 0 chrX 17310838 17310965 -145288965 - MER5A DNA MER1_type 0 189 28 1643 262 78 22 chrX 17310988 17311010 -145288920 - MLT1L LTR MaLR -50 565 546 2541 94 30 22 chrX 17311010 17311371 -145288559 - THE1B LTR MaLR 0 364 1 1643 262 78 22 chrX 17311371 17311883 -145288047 - MLT1L LTR MaLR -69 546 1 1873 163 12 12 chrX 17312846 17313177 -145286753 + MER67C LTR ERV1 375 705 -5 777 136 0 0 chrX 17313427 17313545 -145286385 + FLAM_A SINE Alu 20 137 -5 2046 110 17 0 chrX 17313622 17313914 -145286016 - AluSx SINE Alu -15 297 1 874 291 83 6 chrX 17314249 17314586 -145285344 - LTR16B LTR ERVL 0 464 102 1754 157 23 3 chrX 17315057 17315243 -145284687 - AluJb SINE Alu 0 312 116 216 0 0 0 chrX 17315243 17315267 -145284663 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1754 157 23 3 chrX 17315267 17315386 -145284544 - AluJb SINE Alu -196 116 1 2121 112 0 3 chrX 17315396 17315699 -145284231 - AluSx SINE Alu -10 302 1 444 266 129 17 chrX 17315848 17316081 -145283849 + L1ME4a LINE L1 5591 5849 -272 2314 78 0 10 chrX 17316124 17316432 -145283498 + AluSx SINE Alu 6 310 -2 1039 195 19 28 chrX 17316630 17316845 -145283085 - MER20 DNA MER1_type -4 215 3 186 245 118 88 chrX 17317356 17317458 -145282472 - L2 LINE L2 -46 3267 3163 632 279 105 43 chrX 17317599 17317972 -145281958 - L2 LINE L2 -371 2943 2548 702 229 39 0 chrX 17319092 17319245 -145280685 + MER5B DNA MER1_type 20 178 0 1989 132 6 10 chrX 17319369 17319680 -145280250 - AluSx SINE Alu -2 310 1 943 224 9 31 chrX 17319700 17319923 -145280007 + MER58A DNA MER1_type 3 220 -4 343 264 52 69 chrX 17319980 17320154 -145279776 + L1ME4a LINE L1 5909 6079 -42 387 169 0 0 chrX 17320165 17320236 -145279694 + (TG)n Simple_repeat Simple_repeat 2 72 0 957 150 0 42 chrX 17320237 17320404 -145279526 - AluJb SINE Alu -19 293 134 1608 195 0 7 chrX 17320404 17320706 -145279224 - AluJo SINE Alu -12 300 1 456 198 10 20 chrX 17321157 17321258 -145278672 - LTR33 LTR ERVL -420 101 2 309 131 0 0 chrX 17321313 17321374 -145278556 + (TA)n Simple_repeat Simple_repeat 2 62 0 832 120 8 0 chrX 17321375 17321492 -145278438 - FLAM_C SINE Alu -15 118 1 347 297 21 73 chrX 17321675 17321867 -145278063 - L2 LINE L2 -267 3046 2865 221 277 53 21 chrX 17321947 17322041 -145277889 + MIR3 SINE MIR 91 187 -21 711 286 45 32 chrX 17322145 17322453 -145277477 + LTR16C LTR ERVL 2 313 -178 21 0 0 0 chrX 17322612 17322633 -145277297 + AT_rich Low_complexity Low_complexity 1 21 0 2279 77 0 3 chrX 17322636 17322935 -145276995 - AluSx SINE Alu -14 298 1 28 48 0 0 chrX 17323289 17323331 -145276599 + AT_rich Low_complexity Low_complexity 1 42 0 2143 106 6 3 chrX 17324088 17324399 -145275531 + AluSx SINE Alu 1 312 0 259 191 26 26 chrX 17325295 17325410 -145274520 + GA-rich Low_complexity Low_complexity 4 118 0 399 227 50 28 chrX 17325411 17325610 -145274320 + G-rich Low_complexity Low_complexity 1 203 0 565 287 13 7 chrX 17326208 17326358 -145273572 - L2 LINE L2 -1 3312 3162 483 283 50 96 chrX 17326363 17326706 -145273224 + MLT1J2 LTR MaLR 17 343 -107 1142 233 20 44 chrX 17326783 17327246 -145272684 - L2 LINE L2 -146 3167 2720 1578 139 20 41 chrX 17327250 17327544 -145272386 - AluJb SINE Alu -24 288 1 5025 213 34 36 chrX 17327614 17329012 -145270918 + L1ME3 LINE L1 3945 5339 -807 2890 201 42 23 chrX 17329008 17329704 -145270226 + L1MC4 LINE L1 7334 8042 0 * 2386 159 82 0 chrX 17329717 17330156 -145269774 + L1ME3 LINE L1 5320 5794 -384 10850 150 47 8 chrX 17330326 17330467 -145269463 - L1MA9 LINE L1 0 6312 6178 231 36 0 0 chrX 17330467 17330495 -145269435 + (TG)n Simple_repeat Simple_repeat 1 28 0 10850 150 47 8 chrX 17330495 17333307 -145266623 - L1MA9 LINE L1 -134 6178 3238 346 139 89 0 chrX 17333494 17333573 -145266357 - L1MA9 LINE L1 -2865 3281 3196 1315 101 0 0 chrX 17333575 17333754 -145266176 - AluSg/x SINE Alu -1 311 133 512 194 29 7 chrX 17333754 17333893 -145266037 - L1MA9 LINE L1 -2941 3205 3064 * 813 246 27 48 chrX 17333889 17334219 -145265711 + L1MC4 LINE L1 7717 8039 -3 434 227 0 67 chrX 17334354 17334473 -145265457 - MIR SINE MIR -149 113 3 202 226 65 16 chrX 17335469 17335531 -145264399 - MIR SINE MIR -73 189 125 374 224 47 9 chrX 17335590 17335697 -145264233 + L1ME3 LINE L1 5834 5944 -218 1817 147 88 0 chrX 17336459 17336779 -145263151 - MER7A DNA MER2_type 0 346 1 1453 181 142 14 chrX 17336861 17337201 -145262729 - MLT2D LTR ERVL -78 336 1 2594 143 59 5 chrX 17337201 17337640 -145262290 - ERVL-D LTR ERVL -7 5757 5295 898 289 56 34 chrX 17337640 17337996 -145261934 - MLT1L LTR MaLR -251 364 1 293 226 144 41 chrX 17337997 17338143 -145261787 + L1MC/D LINE L1 4068 4228 -1918 539 294 62 0 chrX 17338329 17338523 -145261407 - MIR SINE MIR -45 217 12 1776 159 0 3 chrX 17338585 17338875 -145261055 - AluJo SINE Alu -22 290 2 324 286 41 41 chrX 17338884 17339104 -145260826 + L1MC/D LINE L1 4617 4836 -1310 291 235 74 12 chrX 17339116 17339197 -145260733 - L1M4 LINE L1 -480 5690 5605 660 235 133 20 chrX 17339212 17339408 -145260522 + MIR SINE MIR 40 257 -5 21 0 0 0 chrX 17339408 17339429 -145260501 + AT_rich Low_complexity Low_complexity 1 21 0 1054 165 48 96 chrX 17339429 17339526 -145260404 - MER8 DNA MER2_type 0 239 139 2290 105 0 0 chrX 17339526 17339831 -145260099 + AluSx SINE Alu 1 305 -7 1054 165 48 96 chrX 17339831 17339982 -145259948 - MER8 DNA MER2_type -100 139 3 540 248 60 78 chrX 17340005 17340335 -145259595 + L1MC/D LINE L1 4877 5211 -910 1723 171 3 16 chrX 17340335 17340651 -145259279 + AluJo SINE Alu 1 312 0 540 248 60 78 chrX 17340651 17341012 -145258918 + L1MC/D LINE L1 5211 5554 -567 2203 184 62 71 chrX 17341134 17341402 -145258528 - L1MEc LINE L1 -3145 3070 2801 2865 164 34 27 chrX 17341402 17341419 -145258511 + MER74A LTR ERVL 1 16 -542 1708 136 3 34 chrX 17341419 17341752 -145258178 - AluJb SINE Alu 0 324 1 2865 164 34 27 chrX 17341752 17342287 -145257643 + MER74A LTR ERVL 16 558 0 2203 184 62 71 chrX 17342287 17342693 -145257237 - L1MEc LINE L1 -3414 2801 2402 682 272 43 39 chrX 17342694 17342731 -145257199 - L1MEc LINE L1 -5882 514 479 2375 78 3 0 chrX 17342731 17343039 -145256891 - AluSx SINE Alu -3 309 1 682 272 43 39 chrX 17343039 17343233 -145256697 - L1MEc LINE L1 -5917 479 282 807 218 26 0 chrX 17343240 17343396 -145256534 - MER45A DNA AcHobo -1 177 18 1092 161 31 63 chrX 17343396 17343651 -145256279 - THE1C LTR MaLR 0 375 129 342 261 132 94 chrX 17344106 17344501 -145255429 - MLT1J LTR MaLR -3 508 99 2179 95 3 19 chrX 17345454 17345771 -145254159 + AluSx SINE Alu 1 312 0 1915 113 77 47 chrX 17346007 17346371 -145253559 + THE1C LTR MaLR 1 375 0 637 284 6 18 chrX 17346909 17347078 -145252852 + MIR3 SINE MIR 37 203 -5 1552 129 0 0 chrX 17347583 17347808 -145252122 + AluSx SINE Alu 1 225 -87 25 0 0 0 chrX 17348023 17348048 -145251882 + AT_rich Low_complexity Low_complexity 1 25 0 228 238 0 63 chrX 17348209 17348272 -145251658 + MLT1L LTR MaLR 142 200 -415 325 266 35 9 chrX 17348366 17348479 -145251451 + MLT1L LTR MaLR 496 611 -4 317 295 86 43 chrX 17348480 17348690 -145251240 + L2 LINE L2 2065 2283 -1031 472 354 0 19 chrX 17348709 17348870 -145251060 - MER5B DNA MER1_type -17 161 4 760 129 60 164 chrX 17349167 17349399 -145250531 + MER3 DNA MER1_type 2 209 0 536 238 52 87 chrX 17349517 17349769 -145250161 + MER112 DNA MER1_type 18 260 0 372 306 111 77 chrX 17350904 17351532 -145248398 - L2 LINE L2 -54 3218 2577 906 239 159 49 chrX 17352133 17352580 -145247350 + MLT1H LTR MaLR 50 545 -4 1048 227 51 16 chrX 17353506 17353762 -145246168 - MLT1C LTR MaLR 0 467 203 1727 151 7 0 chrX 17353820 17354105 -145245825 - AluJo SINE Alu -25 287 1 755 73 0 0 chrX 17354134 17354230 -145245700 + HY3 scRNA scRNA 1 96 -5 221 171 0 0 chrX 17354232 17354273 -145245657 + A-rich Low_complexity Low_complexity 1 41 0 838 201 6 0 chrX 17354277 17354436 -145245494 - MLT1C LTR MaLR -230 160 1 1815 108 50 0 chrX 17354632 17354911 -145245019 + AluSx SINE Alu 1 293 -19 2172 103 80 9 chrX 17355686 17356036 -145243894 - THE1C LTR MaLR 0 375 1 1229 177 63 41 chrX 17356374 17356645 -145243285 + MER67C LTR ERV1 1 277 -433 24189 29 3 0 chrX 17356787 17361179 -145238751 + L1PA4 LINE L1 1740 6142 -13 1940 126 3 3 chrX 17361410 17361715 -145238215 + AluJo SINE Alu 1 305 0 1158 143 27 49 chrX 17363349 17363572 -145236358 - MER20 DNA MER1_type -1 218 1 1013 235 14 0 chrX 17364379 17364596 -145235334 - LTR33 LTR ERVL -301 220 1 2043 116 6 3 chrX 17365519 17365830 -145234100 - AluSx SINE Alu 0 312 1 220 179 0 0 chrX 17365873 17365912 -145234018 + L2 LINE L2 3234 3272 0 409 247 49 121 chrX 17365988 17366259 -145233671 - MIR SINE MIR -6 256 19 1023 115 0 36 chrX 17366563 17366728 -145233202 - FRAM SINE Alu 0 40 1 200 273 109 27 chrX 17366995 17367105 -145232825 + L2 LINE L2 1913 2031 -1283 209 307 95 51 chrX 17367106 17367243 -145232687 + MIR SINE MIR 120 262 0 208 387 39 70 chrX 17367722 17368006 -145231924 + L2 LINE L2 2973 3247 -25 271 208 0 19 chrX 17368022 17368075 -145231855 + MIR3 SINE MIR 134 185 -23 360 303 110 45 chrX 17368197 17368352 -145231578 + MIR3 SINE MIR 14 178 -30 191 129 0 0 chrX 17368518 17368549 -145231381 - L3 LINE CR1 -494 1083 1053 2012 119 0 13 chrX 17368659 17368961 -145230969 - AluSx SINE Alu -14 298 1 21 0 0 0 chrX 17369191 17369212 -145230718 + AT_rich Low_complexity Low_complexity 1 21 0 928 176 6 0 chrX 17369217 17369376 -145230554 + AluJb SINE Alu 128 287 -25 2096 76 56 7 chrX 17369553 17369841 -145230089 + AluSx SINE Alu 1 302 -10 826 227 191 20 chrX 17370710 17370961 -145228969 + AluJo SINE Alu 2 295 -17 272 115 103 0 chrX 17370974 17371061 -145228869 + (TA)n Simple_repeat Simple_repeat 1 96 0 1297 112 0 0 chrX 17371067 17371246 -145228684 + AluJb SINE Alu 133 311 -1 1741 257 45 11 chrX 17372236 17372769 -145227161 - L1MB8 LINE L1 0 6178 5628 988 216 27 9 chrX 17372791 17373013 -145226917 + MIR SINE MIR 32 257 -5 186 195 0 24 chrX 17373033 17373074 -145226856 - MIR3 SINE MIR -6 202 163 691 83 31 0 chrX 17373288 17373384 -145226546 + AluSg/x SINE Alu 192 290 -19 289 112 0 44 chrX 17373798 17373852 -145226078 - MER57A LTR ERV1 -67 336 295 1852 126 0 0 chrX 17373874 17374137 -145225793 + AluJo SINE Alu 18 280 -32 2143 111 3 0 chrX 17375063 17375369 -145224561 - AluSx SINE Alu -5 307 1 302 288 0 0 chrX 17375820 17375886 -145224044 + MIR SINE MIR 90 155 -107 1755 194 106 37 chrX 17375989 17376422 -145223508 + MLT1F LTR MaLR 1 463 -79 904 117 0 15 chrX 17377911 17378048 -145221882 + AluJb SINE Alu 155 289 -23 1452 130 138 8 chrX 17381003 17381264 -145218666 + AluJb SINE Alu 1 295 -17 394 231 167 0 chrX 17381573 17381681 -145218249 + MIR SINE MIR 61 186 -76 228 296 68 0 chrX 17383367 17383455 -145216475 + MER5C DNA MER1_type 31 124 -200 1788 111 57 4 chrX 17384192 17384472 -145215458 + AluSc SINE Alu 1 295 -14 1300 188 58 52 chrX 17384807 17385152 -145214778 - MER7A DNA MER2_type -1 345 1 642 187 24 6 chrX 17385416 17385612 -145214318 - MER8 DNA MER2_type -6 233 3 2059 107 3 32 chrX 17385633 17385943 -145213987 + AluSq SINE Alu 1 301 -12 566 136 164 0 chrX 17385956 17386066 -145213864 + AluJo/FLAM SINE Alu 1 128 -174 2165 102 0 7 chrX 17386068 17386373 -145213557 + AluSx SINE Alu 1 303 -9 2240 95 0 3 chrX 17388417 17388721 -145211209 - AluSq SINE Alu -10 303 1 316 146 15 37 chrX 17390188 17390393 -145209537 + AluJo SINE Alu 1 257 -45 25 0 0 0 chrX 17390393 17390418 -145209512 + AT_rich Low_complexity Low_complexity 1 25 0 1390 134 26 37 chrX 17390783 17391052 -145208878 + AluJo SINE Alu 25 290 -22 443 203 44 95 chrX 17391338 17391496 -145208434 - MIR SINE MIR -3 259 110 360 330 2 0 chrX 17391545 17391672 -145208258 - MIR SINE MIR -78 130 2 258 179 30 30 chrX 17391971 17392038 -145207892 + (CCCCG)n Simple_repeat Simple_repeat 2 68 0 533 343 31 42 chrX 17392780 17393069 -145206861 + L3 LINE CR1 918 1203 -374 660 254 105 10 chrX 17393192 17393401 -145206529 - MLT1I LTR MaLR -165 244 16 216 0 0 0 chrX 17393471 17393495 -145206435 + (TG)n Simple_repeat Simple_repeat 1 24 0 356 290 123 43 chrX 17393504 17393666 -145206264 + L3 LINE CR1 1355 1529 -48 265 310 103 0 chrX 17393859 17393975 -145205955 - L2 LINE L2 -961 2353 2226 321 254 26 0 chrX 17394761 17394875 -145205055 - L1ME3 LINE L1 -6 6156 6040 1888 164 0 0 chrX 17394876 17395186 -145204744 + AluJb SINE Alu 1 310 -2 1064 149 120 130 chrX 17395203 17395519 -145204411 - MLT1A1 LTR MaLR -52 313 1 841 139 0 36 chrX 17395811 17395948 -145203982 - FLAM_C SINE Alu -10 133 2 950 249 4 31 chrX 17396128 17396353 -145203577 + MIR SINE MIR 23 241 -21 382 130 0 0 chrX 17396456 17396510 -145203420 + Alu SINE Alu 1 54 -247 * 410 171 9 48 chrX 17396498 17396603 -145203327 + LTR3 LTR ERVK 330 430 -2 765 100 0 18 chrX 17396609 17396719 -145203211 + AluSg/x SINE Alu 180 287 -23 2682 13 0 3 chrX 17397682 17397990 -145201940 - AluYa5 SINE Alu -4 307 1 366 307 10 10 chrX 17398256 17398357 -145201573 + MIR SINE MIR 17 117 -91 1412 153 95 11 chrX 17398398 17398660 -145201270 + AluJo SINE Alu 1 284 -28 49 32 0 0 chrX 17398676 17398739 -145201191 + AT_rich Low_complexity Low_complexity 1 63 0 198 308 44 107 chrX 17399081 17399240 -145200690 + MIR3 SINE MIR 59 207 -1 1955 118 0 14 chrX 17399605 17399931 -145199999 - AluSq SINE Alu 0 322 1 2162 113 3 0 chrX 17399982 17400283 -145199647 - AluSx SINE Alu -10 302 1 997 261 18 70 chrX 17400323 17400652 -145199278 - LTR16C LTR ERVL -1 490 179 484 346 82 37 chrX 17401804 17402258 -145197672 + L2 LINE L2 2833 3306 -7 2317 103 0 0 chrX 17402259 17402569 -145197361 + AluSx SINE Alu 1 310 -2 2064 105 0 3 chrX 17402569 17402902 -145197028 + AluSx SINE Alu 1 333 0 1173 128 0 0 chrX 17402903 17403067 -145196863 + AluSg/x SINE Alu 134 297 -13 662 247 154 28 chrX 17403521 17403768 -145196162 - MLT1J2 LTR MaLR 0 450 173 832 118 25 159 chrX 17403782 17403831 -145196099 - L1MB8 LINE L1 -6 6172 6118 1424 157 75 21 chrX 17403831 17404112 -145195818 + AluJo SINE Alu 1 296 -16 832 118 25 159 chrX 17404112 17404307 -145195623 - L1MB8 LINE L1 -60 6118 5961 1477 154 41 17 chrX 17404311 17404603 -145195327 - L1MB8 LINE L1 -154 6024 5726 658 259 6 0 chrX 17404613 17404771 -145195159 - MLT1J2 LTR MaLR -268 182 24 195 242 61 15 chrX 17404787 17404853 -145195077 - L2 LINE L2 -1367 1947 1879 1532 231 95 31 chrX 17405235 17405721 -145194209 - LTR33A LTR ERVL 0 523 7 450 148 35 112 chrX 17405776 17405818 -145194112 - L1ME2 LINE L1 -2 6332 6288 1549 162 17 24 chrX 17405818 17406108 -145193822 + AluJo SINE Alu 1 288 -24 450 148 35 112 chrX 17406108 17406208 -145193722 - L1ME2 LINE L1 -46 6288 6041 1301 166 14 0 chrX 17406215 17406426 -145193504 - MSTB LTR MaLR 0 426 213 1707 120 4 0 chrX 17406429 17406670 -145193260 - AluSq SINE Alu -69 244 3 225 320 58 46 chrX 17406996 17407148 -145192782 - MIR SINE MIR -72 136 25 1484 141 32 35 chrX 17407191 17407474 -145192456 + AluJb SINE Alu 13 294 -18 2700 235 160 30 chrX 17407775 17408606 -145191324 - L2 LINE L2 -2 3311 2258 1605 171 0 30 chrX 17408606 17408905 -145191025 + AluSx SINE Alu 1 290 -22 2700 235 160 30 chrX 17408905 17409304 -145190626 - L2 LINE L2 -1055 2258 1912 406 171 248 0 chrX 17409337 17409399 -145190531 - MER5B DNA MER1_type -47 131 86 2333 93 10 3 chrX 17409399 17409710 -145190220 - AluSq SINE Alu 0 313 1 406 171 248 0 chrX 17409710 17409752 -145190178 - MER5B DNA MER1_type -92 86 1 361 131 0 23 chrX 17410113 17410188 -145189742 + AluJb SINE Alu 84 132 -170 1466 116 48 0 chrX 17410142 17410349 -145189581 + AluJb SINE Alu 87 303 -9 863 160 47 99 chrX 17410740 17410953 -145188977 + MER105 DNA DNA 2 203 -1 2149 109 3 42 chrX 17411044 17411357 -145188573 + AluSx SINE Alu 1 301 -11 428 298 118 52 chrX 17411462 17411825 -145188105 - L1ME2 LINE L1 -123 5998 5612 198 0 0 0 chrX 17411829 17411851 -145188079 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1138 164 84 0 chrX 17411901 17412139 -145187791 - MLT2B2 LTR ERVL -4 511 254 1934 109 41 0 chrX 17412449 17412716 -145187214 - AluSx SINE Alu -34 278 1 386 194 43 50 chrX 17412718 17412857 -145187073 - L1MC5 LINE L1 -367 7594 7457 198 0 0 0 chrX 17413035 17413057 -145186873 + (A)n Simple_repeat Simple_repeat 1 22 0 1874 127 18 11 chrX 17413058 17413334 -145186596 - AluSx SINE Alu -34 278 1 207 100 0 0 chrX 17413877 17413907 -145186023 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 978 271 165 18 chrX 17413911 17414443 -145185487 - L2 LINE L2 -16 3297 2630 1405 220 106 48 chrX 17414443 17414962 -145184968 - MLT1H LTR MaLR 0 549 1 978 271 165 18 chrX 17414962 17415102 -145184828 - L2 LINE L2 -683 2630 2512 558 0 0 0 chrX 17415174 17415236 -145184694 + (TC)n Simple_repeat Simple_repeat 2 63 0 2327 100 0 7 chrX 17416011 17416312 -145183618 - AluSx SINE Alu -13 299 1 318 343 89 7 chrX 17416789 17416935 -145182995 - MIR3 SINE MIR -36 172 15 1062 165 7 130 chrX 17417792 17418077 -145181853 + AluJo SINE Alu 5 254 -58 2195 110 3 10 chrX 17418255 17418565 -145181365 - AluSx SINE Alu -4 308 1 2205 98 7 10 chrX 17418960 17419256 -145180674 - AluSx SINE Alu -14 298 4 910 164 71 38 chrX 17420090 17420146 -145179784 - MER5A DNA MER1_type 0 189 136 1825 166 0 19 chrX 17420146 17420460 -145179470 + AluJb SINE Alu 1 308 -4 910 164 71 38 chrX 17420460 17420586 -145179344 - MER5A DNA MER1_type -53 136 1 372 111 0 0 chrX 17420705 17420759 -145179171 + L1PA6 LINE L1 6092 6145 -9 334 261 0 22 chrX 17420764 17420856 -145179074 + L1MC4 LINE L1 6614 6703 -1339 210 191 0 0 chrX 17420856 17420898 -145179032 + (TG)n Simple_repeat Simple_repeat 2 43 0 3502 166 6 2 chrX 17420907 17421457 -145178473 - MER77 LTR ERV1 -36 569 18 662 221 19 6 chrX 17421728 17421886 -145178044 + L1MD1 LINE L1 5966 6125 -117 44451 43 5 0 chrX 17421901 17428022 -145171908 - L1PA4 LINE L1 0 6155 8 731 177 0 0 chrX 17428032 17428162 -145171768 + L1MD1 LINE L1 6112 6241 -1 669 102 339 0 chrX 17428214 17428341 -145171589 - Tigger2 DNA MER2_type 0 2718 2549 * 5304 142 11 25 chrX 17428338 17428731 -145171199 - Tigger2 DNA MER2_type -1863 855 458 2214 127 0 0 chrX 17428731 17429039 -145170891 - AluSx SINE Alu -4 308 1 5304 142 11 25 chrX 17429039 17429512 -145170418 - Tigger2 DNA MER2_type -2260 458 1 1328 171 5 18 chrX 17430173 17430390 -145169540 + MER20 DNA MER1_type 2 215 -4 348 250 10 40 chrX 17430872 17430921 -145169009 + CT-rich Low_complexity Low_complexity 1 50 -395 1924 87 79 0 chrX 17430921 17431174 -145168756 - AluSx SINE Alu -6 306 34 348 250 10 40 chrX 17431174 17431331 -145168599 + CT-rich Low_complexity Low_complexity 50 445 0 740 139 83 0 chrX 17431409 17431517 -145168413 - FLAM_C SINE Alu -16 117 1 355 138 23 0 chrX 17431885 17431972 -145167958 + (TG)n Simple_repeat Simple_repeat 2 90 0 1764 164 7 17 chrX 17432051 17432344 -145167586 + AluJo SINE Alu 6 295 -17 1569 202 70 17 chrX 17433137 17433681 -145166249 + L2 LINE L2 2727 3295 -18 2019 133 3 13 chrX 17433884 17434184 -145165746 - AluSx SINE Alu -15 297 1 698 253 48 9 chrX 17434390 17434697 -145165233 - MLT1J2 LTR MaLR -2 448 38 344 262 124 41 chrX 17435727 17435872 -145164058 + MIR3 SINE MIR 31 187 -21 182 349 0 16 chrX 17436075 17436138 -145163792 - L2 LINE L2 -70 3243 3182 225 304 80 45 chrX 17436274 17436386 -145163544 - L3 LINE CR1 -33 1544 1429 198 0 0 0 chrX 17436413 17436435 -145163495 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2041 112 0 0 chrX 17436438 17436707 -145163223 - AluSx SINE Alu -38 274 6 198 336 82 25 chrX 17437052 17437174 -145162756 + L3 LINE CR1 1171 1299 -278 231 293 57 57 chrX 17437224 17437347 -145162583 + L3 LINE CR1 1429 1551 -26 4278 147 53 36 chrX 17438035 17438081 -145161849 - L1MB8 LINE L1 -22 6156 6112 2269 106 3 0 chrX 17438081 17438374 -145161556 + AluSp SINE Alu 1 294 -19 4278 147 53 36 chrX 17438374 17439150 -145160780 - L1MB8 LINE L1 -66 6112 5320 2967 201 42 23 chrX 17439163 17439859 -145160071 - L1MC4 LINE L1 0 8042 7334 * 5618 203 31 33 chrX 17439855 17441236 -145158694 - L1MB8 LINE L1 -807 5339 3961 1882 148 13 31 chrX 17441315 17441633 -145158297 + AluJb SINE Alu 1 312 0 286 100 0 0 chrX 17441697 17441737 -145158193 - MADE1 DNA Mariner -1 79 40 2378 237 82 25 chrX 17441836 17442116 -145157814 - L1ME3 LINE L1 0 6162 5899 2024 133 0 3 chrX 17442116 17442416 -145157514 + AluJo SINE Alu 1 299 -13 2378 237 82 25 chrX 17442416 17442770 -145157160 - L1ME3 LINE L1 -263 5899 5486 1713 144 33 52 chrX 17442770 17443076 -145156854 - AluJb SINE Alu -12 300 1 2378 237 82 25 chrX 17443076 17443112 -145156818 - L1ME3 LINE L1 -676 5486 5453 802 286 135 68 chrX 17443312 17443590 -145156340 + L3 LINE CR1 839 1097 -480 1934 135 24 14 chrX 17443590 17443887 -145156043 + AluJb SINE Alu 1 300 -12 802 286 135 68 chrX 17443887 17444273 -145155657 + L3 LINE CR1 1097 1548 -29 675 99 0 30 chrX 17445417 17445518 -145154412 + AluSc SINE Alu 202 299 -10 480 233 117 8 chrX 17446012 17446132 -145153798 - MER94 DNA DNA 0 134 2 723 247 47 0 chrX 17446136 17446306 -145153624 - MER5B DNA MER1_type 0 178 1 1092 188 77 14 chrX 17446930 17447138 -145152792 - MER58A DNA MER1_type -3 221 1 2296 189 57 29 chrX 17447163 17447654 -145152276 - MLT1D LTR MaLR 0 505 1 402 292 83 7 chrX 17447887 17448031 -145151899 + MIR SINE MIR 87 241 -21 2349 107 0 0 chrX 17448548 17448848 -145151082 - AluSx SINE Alu -12 300 1 480 18 0 0 chrX 17449611 17449668 -145150262 + (TG)n Simple_repeat Simple_repeat 1 57 0 189 0 0 0 chrX 17449667 17449688 -145150242 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 1266 93 66 85 chrX 17449757 17449830 -145150100 - L1MB8 LINE L1 0 6178 6105 1891 162 0 3 chrX 17449830 17450127 -145149803 - AluJo SINE Alu -16 296 1 1266 93 66 85 chrX 17450127 17450312 -145149618 - L1MB8 LINE L1 -73 6105 5925 183 392 0 0 chrX 17452119 17452198 -145147732 - MIR SINE MIR -138 124 46 285 285 30 85 chrX 17452390 17452590 -145147340 - MIR3 SINE MIR -1 207 19 1877 152 0 10 chrX 17453436 17453726 -145146204 - AluJb SINE Alu -25 287 1 518 197 51 8 chrX 17453726 17453843 -145146087 - MER58 DNA MER1_type -183 158 37 1981 108 7 28 chrX 17453996 17454282 -145145648 + AluSx SINE Alu 1 280 -32 185 0 0 39 chrX 17454283 17454309 -145145621 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 318 67 0 0 chrX 17454351 17454396 -145145534 + (TG)n Simple_repeat Simple_repeat 1 45 0 650 221 32 25 chrX 17454488 17454646 -145145284 - FRAM SINE Alu -16 160 2 1291 149 14 36 chrX 17455227 17455449 -145144481 + MER20 DNA MER1_type 1 217 -2 767 285 19 27 chrX 17455505 17455768 -145144162 - MARNA DNA Mariner -68 518 258 342 296 82 15 chrX 17455817 17455952 -145143978 - MIR SINE MIR -93 169 26 807 177 100 0 chrX 17455997 17456127 -145143803 + AluJb SINE Alu 131 273 -39 236 272 7 116 chrX 17456182 17456329 -145143601 - MARNA DNA Mariner -405 181 51 21 0 0 0 chrX 17456348 17456369 -145143561 + AT_rich Low_complexity Low_complexity 1 21 0 1499 170 31 71 chrX 17456721 17456791 -145143139 + L1M3 LINE L1 5079 5150 -1021 2083 111 27 0 chrX 17456791 17457089 -145142841 + AluSq SINE Alu 1 306 -7 1499 170 31 71 chrX 17457089 17457569 -145142361 + L1M3 LINE L1 5150 5607 -564 1801 164 18 0 chrX 17457570 17457844 -145142086 + AluSx SINE Alu 2 280 -32 1620 31 0 3 chrX 17457845 17458135 -145141795 + (GAGAA)n Simple_repeat Simple_repeat 1 289 0 1295 264 64 35 chrX 17458921 17459356 -145140574 + LTR16A LTR ERVL 1 448 -2 1865 209 12 10 chrX 17459791 17460203 -145139727 + L1 LINE L1 4356 4768 -1378 540 188 0 0 chrX 17460206 17460302 -145139628 + AluJ/FRAM SINE Alu 217 312 0 1921 111 37 37 chrX 17460325 17460622 -145139308 + AluSq SINE Alu 1 297 -16 2090 148 0 3 chrX 17460623 17460927 -145139003 + AluJb SINE Alu 1 303 -9 1633 213 10 33 chrX 17460930 17461319 -145138611 + L1ME1 LINE L1 4760 5139 -1007 3926 194 30 51 chrX 17461334 17461686 -145138244 + L1ME1 LINE L1 5254 5612 -554 2326 99 0 10 chrX 17461686 17461988 -145137942 + AluSx SINE Alu 1 299 -13 3926 194 30 51 chrX 17461988 17462562 -145137368 + L1ME1 LINE L1 5612 6161 -5 351 195 0 46 chrX 17462708 17462795 -145137135 - AluJ/FLAM SINE Alu -217 85 3 2372 118 8 21 chrX 17462982 17463356 -145136574 + THE1C LTR MaLR 7 375 0 1881 268 41 13 chrX 17463494 17463583 -145136347 + L1M4b LINE L1 16 101 -6758 1378 123 50 0 chrX 17463583 17463802 -145136128 - MER30 DNA MER1_type 0 230 1 1881 268 41 13 chrX 17463802 17464179 -145135751 + L1M4b LINE L1 101 495 -6364 1850 84 0 0 chrX 17464179 17464405 -145135525 + AluSg SINE Alu 1 226 -84 870 132 7 14 chrX 17464408 17464552 -145135378 + AluSg/x SINE Alu 168 310 0 2970 207 45 69 chrX 17464554 17465308 -145134622 + L1M4b LINE L1 486 1221 -5638 * 4169 23 8 0 chrX 17465306 17465789 -145134141 - L1P LINE L1 -1491 4655 4169 7594 34 0 0 chrX 17465789 17467254 -145132676 + L1PA4 LINE L1 4689 6153 -2 2454 249 43 47 chrX 17467256 17467961 -145131969 + L1M4b LINE L1 1199 1905 -5054 2275 96 10 0 chrX 17467961 17468253 -145131677 - AluSp SINE Alu -18 295 1 2454 249 43 47 chrX 17468253 17468657 -145131273 + L1M4b LINE L1 1905 2303 -4656 2290 77 0 7 chrX 17468657 17468987 -145130943 + AluY SINE Alu 1 328 0 2454 249 43 47 chrX 17468987 17469109 -145130821 + L1M4b LINE L1 2303 2424 -4535 319 241 0 0 chrX 17469254 17469337 -145130593 + L1M4b LINE L1 2476 2558 -4580 839 304 63 16 chrX 17470577 17470955 -145128975 - L1ME4a LINE L1 -278 5843 5448 399 315 8 0 chrX 17471018 17471145 -145128785 + MIR SINE MIR 40 167 -95 1909 201 37 22 chrX 17471266 17471643 -145128287 + Charlie4a DNA MER1_type 38 425 -1536 3433 101 61 22 chrX 17471643 17472150 -145127780 - MER1A DNA MER1_type 0 527 1 1909 201 37 22 chrX 17472150 17472234 -145127696 + Charlie4a DNA MER1_type 425 506 -2 273 298 7 57 chrX 17473540 17473681 -145126249 - MIR3 SINE MIR -2 206 73 207 0 0 0 chrX 17474040 17474063 -145125867 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2145 119 13 19 chrX 17474138 17474450 -145125480 + AluSx SINE Alu 1 310 -2 186 42 62 62 chrX 17474453 17474501 -145125429 + A-rich Low_complexity Low_complexity 1 48 0 * 665 208 6 0 chrX 17474497 17474665 -145125265 + GA-rich Low_complexity Low_complexity 2 170 0 423 0 0 0 chrX 17475835 17475882 -145124048 + (TG)n Simple_repeat Simple_repeat 2 48 0 1947 138 7 0 chrX 17475882 17476164 -145123766 - AluSx SINE Alu -25 287 1 2310 100 0 31 chrX 17476480 17476594 -145123336 + AluSx SINE Alu 3 119 -193 2499 90 0 0 chrX 17476594 17476905 -145123025 + AluY SINE Alu 1 311 0 2310 100 0 31 chrX 17476905 17477110 -145122820 + AluSx SINE Alu 119 312 0 2342 99 3 3 chrX 17477992 17478304 -145121626 - AluSq SINE Alu -1 312 1 889 217 26 22 chrX 17478487 17478717 -145121213 - MIR SINE MIR -28 234 4 184 186 0 47 chrX 17478824 17478867 -145121063 - L2 LINE L2 -541 2773 2733 2056 128 0 16 chrX 17479148 17479475 -145120455 - AluSx SINE Alu 0 312 1 673 132 166 102 chrX 17479905 17480110 -145119820 + MER20 DNA MER1_type 1 218 -1 2251 110 0 13 chrX 17480232 17480542 -145119388 - AluSx SINE Alu -6 306 1 197 326 58 12 chrX 17481022 17481108 -145118822 - L2 LINE L2 -20 3252 3163 1852 239 54 6 chrX 17481236 17481733 -145118197 - L1ME2 LINE L1 -1 6163 5643 233 256 0 39 chrX 17481980 17482058 -145117872 + MIR SINE MIR 183 257 -5 2047 132 0 49 chrX 17482212 17482539 -145117391 + AluJb SINE Alu 1 311 -1 1342 150 41 0 chrX 17482895 17483115 -145116815 + MER46A DNA MER2_type 5 233 -3 2289 87 17 13 chrX 17484353 17484651 -145115279 - AluSx SINE Alu -13 299 1 1185 185 39 15 chrX 17484665 17484924 -145115006 - L1MB2 LINE L1 -8 6163 5899 1323 97 101 10 chrX 17484924 17485123 -145114807 + MER30 DNA MER1_type 10 230 0 1960 114 46 3 chrX 17485123 17485429 -145114501 - L1MB2 LINE L1 -260 5911 5593 634 124 9 9 chrX 17485432 17485545 -145114385 + (TTCTC)n Simple_repeat Simple_repeat 3 115 0 2124 96 0 31 chrX 17486122 17486413 -145113517 + AluSx SINE Alu 23 304 -8 22 35 0 0 chrX 17486487 17486516 -145113414 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chrX 17486699 17486721 -145113209 + (TG)n Simple_repeat Simple_repeat 2 23 0 2323 148 0 3 chrX 17487242 17487580 -145112350 + MER1B DNA MER1_type 1 337 0 320 257 63 69 chrX 17487928 17488103 -145111827 - MIR3 SINE MIR -5 203 30 2442 99 0 0 chrX 17488160 17488472 -145111458 + AluSx SINE Alu 1 312 0 738 184 58 35 chrX 17491028 17491202 -145108728 - MER5B DNA MER1_type 0 178 1 2046 175 16 22 chrX 17492579 17492882 -145107048 + MLT1A1 LTR MaLR 2 304 -61 2284 111 0 0 chrX 17492882 17493180 -145106750 + AluSx SINE Alu 1 298 -14 2046 175 16 22 chrX 17493180 17493242 -145106688 + MLT1A1 LTR MaLR 304 365 0 435 38 0 0 chrX 17493269 17493322 -145106608 + (CA)n Simple_repeat Simple_repeat 2 54 0 307 232 118 15 chrX 17493331 17493512 -145106418 - L1ME3A LINE L1 -207 5963 5754 2028 158 0 3 chrX 17493593 17493904 -145106026 + AluJb SINE Alu 1 310 -2 195 321 62 0 chrX 17494311 17494392 -145105538 - L2 LINE L2 -19 3253 3168 1864 145 54 7 chrX 17494815 17495112 -145104818 - AluSx SINE Alu -1 311 1 872 125 0 22 chrX 17495114 17495250 -145104680 - AluJo/FLAM SINE Alu -169 133 1 785 191 31 80 chrX 17495250 17495538 -145104392 - L1MC5 LINE L1 -30 7931 7658 2198 94 3 3 chrX 17495812 17496099 -145103831 + AluSq SINE Alu 1 287 -26 180 0 0 0 chrX 17496474 17496494 -145103436 + (A)n Simple_repeat Simple_repeat 1 20 0 234 304 35 35 chrX 17496879 17496994 -145102936 - MIR SINE MIR -72 136 22 718 191 0 0 chrX 17497308 17497423 -145102507 + FLAM_A SINE Alu 2 116 -17 2348 94 3 0 chrX 17498140 17498438 -145101492 - AluSx SINE Alu -13 299 1 930 141 0 0 chrX 17498968 17499096 -145100834 + FRAM SINE Alu 33 160 -16 2402 100 0 0 chrX 17499193 17499493 -145100437 - AluSx SINE Alu -12 300 1 2346 104 0 0 chrX 17500289 17500587 -145099343 - AluSx SINE Alu -14 298 1 267 325 0 0 chrX 17501520 17501600 -145098330 - MIR SINE MIR -137 125 46 3303 236 33 27 chrX 17501908 17503082 -145096848 + L1ME2 LINE L1 4981 6163 -1 2299 115 0 0 chrX 17503090 17503402 -145096528 + AluSx SINE Alu 1 312 0 2158 109 14 0 chrX 17504909 17505192 -145094738 + AluSx SINE Alu 1 287 -25 1793 132 68 60 chrX 17505362 17505662 -145094268 + THE1C LTR MaLR 1 306 -69 1838 161 0 10 chrX 17505662 17505961 -145093969 + AluSx SINE Alu 1 296 -16 1793 132 68 60 chrX 17505961 17506030 -145093900 + THE1C LTR MaLR 306 373 -2 432 307 127 5 chrX 17506105 17506294 -145093636 - L2 LINE L2 -673 2641 2430 2166 125 0 3 chrX 17506557 17506852 -145093078 - AluSx SINE Alu -18 294 1 1784 152 3 18 chrX 17506958 17507241 -145092689 + AluJb SINE Alu 1 279 -33 219 36 0 0 chrX 17507241 17507269 -145092661 + (GGGGA)n Simple_repeat Simple_repeat 2 29 0 366 152 0 30 chrX 17507326 17507392 -145092538 - MLT1I LTR MaLR -2 407 344 1992 140 27 0 chrX 17507807 17508099 -145091831 + AluJb SINE Alu 1 300 -12 25 31 0 0 chrX 17508168 17508200 -145091730 + AT_rich Low_complexity Low_complexity 1 32 0 486 294 127 30 chrX 17508503 17508833 -145091097 - MLT1J2 LTR MaLR -24 426 65 2124 114 0 44 chrX 17508868 17509048 -145090882 - AluSx SINE Alu -9 303 141 2332 103 0 10 chrX 17509048 17509359 -145090571 - AluSq SINE Alu -5 308 1 2124 114 0 44 chrX 17509359 17509494 -145090436 - AluSx SINE Alu -171 141 2 2244 104 0 10 chrX 17509642 17509949 -145089981 - AluSx SINE Alu -8 304 1 1311 102 11 11 chrX 17510544 17510731 -145089199 + AluJb SINE Alu 126 312 0 849 201 48 43 chrX 17510731 17510966 -145088964 + L1MC1 LINE L1 6123 6333 0 2132 104 0 3 chrX 17510996 17511293 -145088637 - AluSq SINE Alu -17 296 1 2010 129 0 3 chrX 17511303 17511598 -145088332 - AluSx SINE Alu -18 294 1 563 164 25 16 chrX 17511598 17511720 -145088210 + L1MB3 LINE L1 6059 6181 -2 1462 185 10 14 chrX 17511727 17512019 -145087911 + AluJb SINE Alu 1 291 -21 34 0 0 0 chrX 17512034 17512068 -145087862 + AT_rich Low_complexity Low_complexity 1 34 0 12374 80 34 1 chrX 17512365 17514088 -145085842 + L1PA8 LINE L1 2630 4412 -1734 7195 40 17 10 chrX 17514088 17515461 -145084469 + L1PA8 LINE L1 4780 6162 -10 615 242 28 79 chrX 17515510 17515610 -145084320 + MER3 DNA MER1_type 1 86 -123 1474 146 73 15 chrX 17515610 17515884 -145084046 - AluJb SINE Alu -22 290 1 615 242 28 79 chrX 17515884 17515998 -145083932 + MER3 DNA MER1_type 86 204 -5 326 208 14 0 chrX 17515947 17516019 -145083911 - MER3 DNA MER1_type -105 104 32 * 557 244 103 0 chrX 17517261 17517417 -145082513 - MER5B DNA MER1_type -4 174 3 1959 92 14 4 chrX 17517649 17517930 -145082000 - AluSq SINE Alu -29 284 1 198 0 0 0 chrX 17517930 17517952 -145081978 + (T)n Simple_repeat Simple_repeat 1 22 0 2309 85 0 0 chrX 17518427 17518721 -145081209 + AluSx SINE Alu 1 294 -18 2269 96 0 0 chrX 17519456 17519758 -145080172 + AluSx SINE Alu 1 302 -10 29 0 0 0 chrX 17521784 17521813 -145078117 + AT_rich Low_complexity Low_complexity 1 29 0 1557 142 30 10 chrX 17523268 17523564 -145076366 + AluY SINE Alu 1 302 -9 320 217 11 54 chrX 17524093 17524185 -145075745 - MIR3 SINE MIR -29 179 92 1862 142 3 17 chrX 17524296 17524592 -145075338 - AluJb SINE Alu -20 292 1 207 0 0 0 chrX 17524647 17524670 -145075260 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2212 87 0 0 chrX 17524682 17524970 -145074960 - AluSx SINE Alu -24 288 1 282 256 155 23 chrX 17526496 17526625 -145073305 - MER103 DNA DNA -1 165 20 2180 96 0 7 chrX 17527004 17527296 -145072634 - AluSx SINE Alu -18 294 5 216 310 28 0 chrX 17529189 17529260 -145070670 - L2 LINE L2 -39 3274 3202 310 255 21 32 chrX 17530442 17530536 -145069394 - MIR SINE MIR -120 142 50 297 199 26 41 chrX 17532259 17532347 -145067583 - MIR SINE MIR -111 97 40 239 301 106 41 chrX 17532429 17532552 -145067378 - L2 LINE L2 -15 3257 3127 1759 151 7 10 chrX 17532954 17533252 -145066678 + AluJb SINE Alu 1 297 -15 431 256 17 34 chrX 17534115 17534232 -145065698 + L2 LINE L2 3198 3312 -1 189 0 0 0 chrX 17534908 17534929 -145065001 + (GA)n Simple_repeat Simple_repeat 2 22 0 432 333 88 22 chrX 17535014 17535414 -145064516 + L1ME4a LINE L1 5614 6039 -82 807 292 114 51 chrX 17536608 17537036 -145062894 + MLT1L LTR MaLR 161 615 0 1040 144 128 0 chrX 17537633 17537821 -145062109 - AluJb SINE Alu -16 296 85 515 246 37 37 chrX 17537984 17538171 -145061759 - L1ME4a LINE L1 -2 6119 5933 391 318 59 12 chrX 17538749 17538919 -145061011 - MER5B DNA MER1_type 0 178 1 275 253 181 12 chrX 17539490 17539573 -145060357 + L2 LINE L2 3134 3230 -42 395 101 82 0 chrX 17539920 17540079 -145059851 + (TA)n Simple_repeat Simple_repeat 2 173 0 304 147 40 0 chrX 17540084 17540159 -145059771 + (TTATA)n Simple_repeat Simple_repeat 2 79 0 426 183 11 11 chrX 17540159 17540334 -145059596 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 196 179 32 16 chrX 17540348 17540471 -145059459 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 2228 83 0 0 chrX 17540471 17540760 -145059170 - AluSx SINE Alu -23 289 1 225 338 158 58 chrX 17541852 17542130 -145057800 + L2 LINE L2 2966 3271 -1 1510 143 50 60 chrX 17542724 17543025 -145056905 - AluJo SINE Alu -9 303 6 390 271 72 42 chrX 17543061 17543227 -145056703 - MIR SINE MIR -29 233 63 223 263 0 18 chrX 17543469 17543526 -145056404 - L2 LINE L2 -2 3270 3215 456 219 265 13 chrX 17543557 17543708 -145056222 + MER3 DNA MER1_type 1 189 -20 581 286 13 13 chrX 17543769 17543923 -145056007 - L2 LINE L2 -3 3269 3116 365 257 47 17 chrX 17544211 17544353 -145055577 + L1ME LINE L1 5541 5660 -461 2095 180 146 25 chrX 17544367 17545044 -145054886 - Charlie2 DNA MER1_type -28 2834 2076 2297 83 0 22 chrX 17545044 17545358 -145054572 + AluSx SINE Alu 1 307 -5 292 234 9 19 chrX 17545760 17545867 -145054063 + (CCG)n Simple_repeat Simple_repeat 3 108 0 256 184 26 40 chrX 17546171 17546247 -145053683 + G-rich Low_complexity Low_complexity 3 77 0 194 79 0 26 chrX 17546325 17546363 -145053567 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 1727 121 0 91 chrX 17546806 17547137 -145052793 - AluSx SINE Alu -9 303 3 283 75 57 0 chrX 17547225 17547278 -145052652 - L1MA7 LINE L1 -1 6290 6235 3689 79 10 0 chrX 17547278 17547758 -145052172 - L1PA13 LINE L1 -14 6149 5665 2952 80 11 6 chrX 17547758 17548215 -145051715 + L1PA13 LINE L1 5198 5656 -507 1385 132 27 81 chrX 17548222 17548517 -145051413 - L1MB8 LINE L1 0 6178 5900 263 219 78 0 chrX 17548525 17548589 -145051341 - L1MB8 LINE L1 -529 5655 5587 708 143 107 0 chrX 17548592 17548704 -145051226 - FLAM_C SINE Alu -19 124 1 1803 174 28 9 chrX 17548704 17549142 -145050788 - L1MB8 LINE L1 -571 5613 5167 867 107 0 0 chrX 17550047 17550168 -145049762 - AluJb SINE Alu -6 306 186 855 156 0 0 chrX 17550171 17550306 -145049624 - FLAM_C SINE Alu -8 135 1 447 260 194 26 chrX 17550306 17550352 -145049578 - L3 LINE CR1 -200 1377 1340 1677 158 20 17 chrX 17550352 17550649 -145049281 - AluJo SINE Alu -14 298 1 447 260 194 26 chrX 17550649 17550829 -145049101 - L3 LINE CR1 -237 1340 1113 821 148 53 12 chrX 17550858 17551027 -145048903 - L1MD1 LINE L1 0 7037 6862 2211 102 0 0 chrX 17551030 17551325 -145048605 + AluSx SINE Alu 1 295 -17 1553 113 17 0 chrX 17551325 17551564 -145048366 - L1MD1 LINE L1 -430 6724 6482 2076 105 3 3 chrX 17551567 17551862 -145048068 - AluSx SINE Alu -5 307 13 1944 114 43 0 chrX 17551885 17552184 -145047746 - AluSx SINE Alu 0 312 1 2353 223 42 17 chrX 17552184 17552826 -145047104 - L1MD1 LINE L1 -823 6118 5461 1130 235 16 29 chrX 17552818 17553129 -145046801 - L1MD1 LINE L1 -2416 4525 4219 * 4257 241 59 23 chrX 17553110 17554422 -145045508 - L1MB8 LINE L1 -1460 4686 3328 1209 224 95 86 chrX 17554483 17554644 -145045286 - L1MD1 LINE L1 -4872 1550 1392 1730 128 13 26 chrX 17554644 17554949 -145044981 + AluJb SINE Alu 1 301 -11 1209 224 95 86 chrX 17554949 17554991 -145044939 - L1MD1 LINE L1 -5030 1392 1352 1756 128 0 19 chrX 17554991 17555256 -145044674 + AluSx SINE Alu 21 280 -32 185 0 40 0 chrX 17555256 17555281 -145044649 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 1209 224 95 86 chrX 17555281 17555754 -145044176 - L1MD1 LINE L1 -5069 1353 811 547 273 137 66 chrX 17555869 17556266 -145043664 - L1MD1 LINE L1 -5518 938 540 1974 135 23 0 chrX 17556266 17556570 -145043360 - AluJo SINE Alu -1 311 1 547 273 137 66 chrX 17556570 17556715 -145043215 - L1MD1 LINE L1 -5916 540 407 985 206 5 16 chrX 17556897 17557086 -145042844 - MER5A DNA MER1_type -2 187 1 1634 134 19 86 chrX 17557230 17557544 -145042386 - AluSx SINE Alu -19 293 1 887 112 0 0 chrX 17557544 17557669 -145042261 - AluSq/x SINE Alu -177 135 11 571 255 133 53 chrX 17558045 17558347 -145041583 - L2 LINE L2 0 3313 2988 1751 151 13 16 chrX 17558544 17558670 -145041260 + AluJb SINE Alu 1 126 -186 207 0 0 0 chrX 17558670 17558693 -145041237 + (CA)n Simple_repeat Simple_repeat 2 24 0 1751 151 13 16 chrX 17558693 17558877 -145041053 + AluJb SINE Alu 126 310 -2 304 250 40 0 chrX 17558881 17558957 -145040973 + L1ME4a LINE L1 5653 5731 -390 242 306 149 33 chrX 17559085 17559206 -145040724 + L2 LINE L2 3122 3256 -16 392 176 162 14 chrX 17559208 17559350 -145040580 + L1ME4a LINE L1 5755 5917 -204 1535 144 7 48 chrX 17559555 17559847 -145040083 - AluJo SINE Alu -32 280 1 2326 89 0 0 chrX 17559852 17560156 -145039774 - AluSx SINE Alu -8 304 1 1986 139 3 7 chrX 17560661 17560970 -145038960 - AluSx SINE Alu -4 308 1 2044 93 0 48 chrX 17561108 17561419 -145038511 - AluSc SINE Alu -13 296 1 2173 81 3 44 chrX 17561420 17561741 -145038189 - AluSg SINE Alu -2 308 1 820 196 15 39 chrX 17561742 17561946 -145037984 - Charlie2 DNA MER1_type -780 2082 1884 781 159 15 8 chrX 17562118 17562250 -145037680 + FLAM_A SINE Alu 1 133 0 721 129 40 16 chrX 17562571 17562695 -145037235 - AluJb SINE Alu -179 133 7 211 325 26 13 chrX 17562718 17562795 -145037135 - MIR3 SINE MIR -44 164 87 1775 151 17 0 chrX 17562909 17563207 -145036723 + AluJb SINE Alu 1 303 -9 194 136 51 17 chrX 17566647 17566706 -145033224 + CT-rich Low_complexity Low_complexity 1 61 0 1096 140 5 48 chrX 17566891 17567108 -145032822 - MER20 DNA MER1_type -2 217 1 208 315 33 71 chrX 17567127 17567164 -145032766 + MIR SINE MIR 28 65 -197 2453 68 3 0 chrX 17567164 17567473 -145032457 - AluSq SINE Alu -3 310 1 208 315 33 71 chrX 17567473 17567619 -145032311 + MIR SINE MIR 65 204 -58 819 90 0 0 chrX 17568038 17568149 -145031781 - AluSp/q SINE Alu -15 298 188 730 135 18 0 chrX 17568149 17568260 -145031670 + AluJo/FRAM SINE Alu 180 292 -20 1869 159 32 60 chrX 17569198 17569348 -145030582 + L1MD2 LINE L1 5969 6122 -237 2054 141 0 3 chrX 17569348 17569661 -145030269 + AluJb SINE Alu 1 312 0 1869 159 32 60 chrX 17569661 17569912 -145030018 + L1MD2 LINE L1 6122 6359 0 2580 97 33 15 chrX 17570016 17570407 -145029523 + L1MA2 LINE L1 5800 6197 -107 25 31 0 0 chrX 17570554 17570586 -145029344 + AT_rich Low_complexity Low_complexity 1 32 0 1967 128 0 3 chrX 17572785 17573074 -145026856 + AluJb SINE Alu 1 288 -24 424 113 37 62 chrX 17574288 17574568 -145025362 + (TA)n Simple_repeat Simple_repeat 1 273 0 301 213 0 85 chrX 17574568 17574662 -145025268 - L1MC4 LINE L1 -1333 6709 6624 672 139 46 0 chrX 17574676 17574784 -145025146 - AluSg/x SINE Alu -17 292 180 416 285 147 48 chrX 17574786 17575098 -145024832 + L1ME4a LINE L1 5696 6038 -83 224 313 0 0 chrX 17575098 17575162 -145024768 + L2 LINE L2 3208 3271 -1 426 191 21 11 chrX 17575296 17575390 -145024540 + L1ME4a LINE L1 5956 6050 -71 2109 124 0 0 chrX 17575399 17575698 -145024232 - AluSx SINE Alu -13 299 1 316 336 18 9 chrX 17575931 17576044 -145023886 + MIR3 SINE MIR 45 158 -50 1648 136 106 23 chrX 17576552 17576854 -145023076 - MLT1A1 LTR MaLR -36 329 3 843 168 0 7 chrX 17576917 17577054 -145022876 + MLT1B LTR MaLR 1 136 -254 656 139 10 0 chrX 17577047 17577148 -145022782 + MLT1B LTR MaLR 251 352 -38 * 326 234 47 37 chrX 17578495 17578551 -145021379 - MIR SINE MIR -3 259 205 186 43 0 0 chrX 17578551 17578574 -145021356 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1482 173 0 11 chrX 17578578 17578838 -145021092 - AluJo SINE Alu -38 274 18 326 234 47 37 chrX 17578838 17578883 -145021047 - MIR SINE MIR -59 203 152 306 132 57 0 chrX 17580675 17580728 -145019202 - MLT1G LTR MaLR -32 558 503 890 271 102 11 chrX 17580828 17581156 -145018774 + LTR16A LTR ERVL 89 457 0 470 269 18 99 chrX 17581159 17581322 -145018608 - MIR SINE MIR -64 144 1 205 132 0 53 chrX 17581944 17581982 -145017948 + (GGAAA)n Simple_repeat Simple_repeat 5 40 0 658 124 0 0 chrX 17582155 17582252 -145017678 - L1PB3 LINE L1 -4 6150 6054 364 306 19 51 chrX 17582460 17582617 -145017313 - MIR3 SINE MIR -40 168 17 358 324 58 53 chrX 17583927 17584152 -145015778 - MIR SINE MIR -13 249 24 224 293 206 69 chrX 17584280 17584512 -145015418 + L2 LINE L2 1703 1902 -1412 732 162 133 40 chrX 17584512 17584541 -145015389 + MER5A DNA MER1_type 1 26 -163 186 43 0 0 chrX 17584541 17584564 -145015366 + (CAG)n Simple_repeat Simple_repeat 1 23 0 732 162 133 40 chrX 17584564 17584707 -145015223 + MER5A DNA MER1_type 26 189 0 224 293 206 69 chrX 17584707 17584933 -145014997 + L2 LINE L2 1902 2239 -1075 1469 195 30 13 chrX 17584933 17585235 -145014695 - AluJo SINE Alu -5 307 1 224 293 206 69 chrX 17585235 17585281 -145014649 + L2 LINE L2 2239 2277 -1037 180 0 0 0 chrX 17585846 17585866 -145014064 + (A)n Simple_repeat Simple_repeat 1 20 0 187 346 13 13 chrX 17586105 17586183 -145013747 + L2 LINE L2 262 339 -2975 224 325 59 73 chrX 17586252 17586609 -145013321 + L2 LINE L2 543 894 -2420 2205 83 0 3 chrX 17587118 17587447 -145012483 - AluSq SINE Alu 0 328 1 32 43 0 0 chrX 17587724 17587770 -145012160 + AT_rich Low_complexity Low_complexity 1 46 0 199 235 7 7 chrX 17587783 17587919 -145012011 + (TA)n Simple_repeat Simple_repeat 2 137 0 235 238 49 0 chrX 17588023 17588145 -145011785 + (TA)n Simple_repeat Simple_repeat 1 128 0 307 92 31 0 chrX 17588178 17588243 -145011687 + (TA)n Simple_repeat Simple_repeat 1 67 0 348 257 76 34 chrX 17588243 17588385 -145011545 + L1MC4 LINE L1 6543 6648 -1137 1605 189 0 11 chrX 17588388 17588673 -145011257 - AluJb SINE Alu -30 282 1 192 221 143 65 chrX 17589366 17589443 -145010487 - L2 LINE L2 -7 3306 3224 279 0 0 0 chrX 17589730 17589761 -145010169 + (CAG)n Simple_repeat Simple_repeat 1 31 0 781 163 16 0 chrX 17589763 17589892 -145010038 + MER5A DNA MER1_type 59 189 0 330 252 28 56 chrX 17589766 17589909 -145010021 - MER5A DNA MER1_type -50 139 1 * 194 326 0 0 chrX 17590545 17590594 -145009336 + L2 LINE L2 1852 1900 -1414 1973 125 9 41 chrX 17590908 17590981 -145008949 + L1MB2 LINE L1 5836 5910 -261 2298 67 7 0 chrX 17590981 17591280 -145008650 + AluSp SINE Alu 3 303 -10 1973 125 9 41 chrX 17591280 17591550 -145008380 + L1MB2 LINE L1 5910 6168 -3 307 254 62 54 chrX 17591667 17591797 -145008133 - MIR SINE MIR -98 164 34 244 327 63 60 chrX 17593024 17593357 -145006573 + L2 LINE L2 2919 3252 -20 1897 126 37 0 chrX 17593933 17594227 -145005703 + AluJo SINE Alu 1 305 -7 1701 135 10 61 chrX 17594743 17595055 -145004875 - AluJo SINE Alu -16 296 1 1479 233 192 13 chrX 17596657 17597130 -145002800 + MLT1G LTR MaLR 1 558 -32 219 146 0 0 chrX 17598110 17598151 -145001779 + (T)n Simple_repeat Simple_repeat 1 41 0 8785 99 21 2 chrX 17598736 17599947 -144999983 - Tigger1 DNA MER2_type 0 2418 1184 857 127 0 8 chrX 17600057 17600183 -144999747 - FLAM_C SINE Alu -17 126 2 3633 98 31 0 chrX 17600183 17600695 -144999235 - Tigger1 DNA MER2_type -1241 1177 650 405 0 0 0 chrX 17600695 17600740 -144999190 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 843 121 0 0 chrX 17600740 17600856 -144999074 - FLAM_C SINE Alu -26 117 2 4299 154 8 1 chrX 17600856 17601513 -144998417 - Tigger1 DNA MER2_type -1757 661 1 1661 50 59 0 chrX 17602332 17602552 -144997378 + AluY SINE Alu 2 234 -77 225 0 0 0 chrX 17602561 17602586 -144997344 + (A)n Simple_repeat Simple_repeat 1 25 0 1701 151 0 3 chrX 17602595 17602879 -144997051 + AluJb SINE Alu 30 312 0 214 256 200 22 chrX 17603366 17603456 -144996474 - MIR SINE MIR -70 138 33 1817 148 0 0 chrX 17606244 17606521 -144993409 - AluJo SINE Alu -29 283 7 631 145 76 0 chrX 17607805 17607936 -144991994 + L1MA8 LINE L1 6148 6288 -3 217 317 106 10 chrX 17608226 17608330 -144991600 + L2 LINE L2 3199 3312 -1 737 337 4 16 chrX 17608638 17608893 -144991037 - MIR SINE MIR -3 259 8 567 244 192 6 chrX 17609190 17609346 -144990584 - MER5A DNA MER1_type -1 188 4 236 313 71 9 chrX 17610194 17610306 -144989624 - MIR SINE MIR -14 248 130 2276 93 3 3 chrX 17610836 17611146 -144988784 - AluSx SINE Alu -2 310 1 425 284 9 26 chrX 17611524 17611640 -144988290 - L2 LINE L2 -1 3312 3199 210 342 135 9 chrX 17612249 17612360 -144987570 + L2 LINE L2 3145 3269 -3 184 363 52 37 chrX 17613083 17613218 -144986712 - L2 LINE L2 -4 3268 3132 1879 146 0 24 chrX 17613427 17613721 -144986209 - AluJb SINE Alu -23 289 3 2442 89 0 6 chrX 17613877 17614191 -144985739 - AluSx SINE Alu 0 312 1 225 65 0 0 chrX 17614494 17614525 -144985405 + (A)n Simple_repeat Simple_repeat 1 31 0 2233 105 0 10 chrX 17614937 17615241 -144984689 - AluSx SINE Alu -11 301 1 309 190 25 63 chrX 17615265 17615344 -144984586 + MER5B DNA MER1_type 2 77 -101 253 146 0 21 chrX 17615914 17615962 -144983968 + MER94 DNA DNA 54 100 -34 219 267 13 27 chrX 17616386 17616461 -144983469 - L3 LINE CR1 -101 1476 1403 584 190 56 67 chrX 17617148 17617327 -144982603 + MER5B DNA MER1_type 2 178 0 524 238 159 0 chrX 17617342 17617493 -144982437 - MER5A DNA MER1_type -6 183 9 237 345 43 17 chrX 17617510 17617626 -144982304 + L2 LINE L2 3154 3272 0 434 68 0 0 chrX 17618592 17618651 -144981279 - AluJb SINE Alu -14 298 240 1455 187 4 0 chrX 17618701 17618936 -144980994 - AluJb SINE Alu -76 236 1 309 314 71 82 chrX 17619219 17619863 -144980067 - L1MEc LINE L1 -5549 847 211 201 339 0 0 chrX 17622899 17622955 -144976975 + G-rich Low_complexity Low_complexity 5 60 0 747 264 87 20 chrX 17623501 17623755 -144976175 + MLT1L LTR MaLR 1 271 -344 585 0 0 0 chrX 17623773 17623838 -144976092 + (TG)n Simple_repeat Simple_repeat 1 65 0 399 180 0 0 chrX 17623840 17623951 -144975979 + GA-rich Low_complexity Low_complexity 2 112 0 409 187 13 0 chrX 17624081 17624156 -144975774 - L1ME1 LINE L1 -49 6117 6042 204 241 35 92 chrX 17624383 17624524 -144975406 + MIR3 SINE MIR 15 147 -61 2973 46 11 19 chrX 17624931 17625303 -144974627 + L1PA8A LINE L1 5763 6131 0 1109 182 108 8 chrX 17626826 17627084 -144972846 - MER46C DNA MER2_type -53 285 2 2201 107 0 0 chrX 17627538 17627869 -144972061 + AluSg SINE Alu 1 331 0 2584 47 3 0 chrX 17627974 17628274 -144971656 + AluY SINE Alu 1 301 -10 872 152 84 22 chrX 17628289 17628467 -144971463 - MER5A DNA MER1_type 0 189 1 216 255 0 0 chrX 17628664 17628711 -144971219 - L2 LINE L2 -2 3311 3265 909 168 10 64 chrX 17628774 17628977 -144970953 + MER20 DNA MER1_type 28 219 0 180 0 0 0 chrX 17629753 17629773 -144970157 + (T)n Simple_repeat Simple_repeat 1 20 0 2933 195 26 29 chrX 17629814 17630463 -144969467 + LTR65 LTR ERV1 1 647 -22 2757 86 44 3 chrX 17630463 17631004 -144968926 + MER51A LTR ERV1 1 634 0 200 31 62 0 chrX 17631152 17631184 -144968746 + T-rich Low_complexity Low_complexity 2 35 0 1934 134 0 11 chrX 17631698 17631982 -144967948 - AluJo SINE Alu -25 287 7 703 172 25 37 chrX 17633153 17633385 -144966545 - AluJb SINE Alu 0 312 2 445 276 6 71 chrX 17633636 17633806 -144966124 - MIR3 SINE MIR -8 200 42 2418 68 28 0 chrX 17634025 17634347 -144965583 + L1MA1 LINE L1 5963 6293 -9 24 32 0 0 chrX 17634352 17634383 -144965547 + AT_rich Low_complexity Low_complexity 1 31 0 1435 192 28 9 chrX 17634383 17634701 -144965229 + MER33 DNA MER1_type 1 324 0 884 134 17 17 chrX 17637960 17638198 -144961732 + GA-rich Low_complexity Low_complexity 1 238 0 287 311 29 0 chrX 17638357 17638472 -144961458 - MER20 DNA MER1_type -22 197 76 2538 93 30 8 chrX 17639948 17640313 -144959617 - THE1C LTR MaLR -2 373 1 207 0 0 0 chrX 17641995 17642018 -144957912 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2414 94 0 7 chrX 17642196 17642503 -144957427 + AluSg SINE Alu 1 305 -5 2015 141 34 3 chrX 17642786 17643084 -144956846 + AluJb SINE Alu 1 307 -5 2181 96 0 14 chrX 17643086 17643406 -144956524 + AluSx SINE Alu 1 312 0 2099 136 13 7 chrX 17643596 17643904 -144956026 + AluSx SINE Alu 1 310 -2 917 206 103 53 chrX 17644895 17645157 -144954773 - L1M4 LINE L1 -950 5196 4949 2486 65 0 46 chrX 17645157 17645481 -144954449 - AluY SINE Alu -2 309 1 917 206 103 53 chrX 17645481 17645590 -144954340 - L1M4 LINE L1 -1197 4949 4801 1867 181 30 0 chrX 17645590 17645921 -144954009 + MER58B DNA MER1_type 1 341 0 917 206 103 53 chrX 17645921 17645946 -144953984 - L1M4 LINE L1 -1345 4801 4779 306 270 45 36 chrX 17646381 17646492 -144953438 + L1ME4a LINE L1 5458 5569 -552 690 204 44 17 chrX 17646557 17646738 -144953192 - MIR SINE MIR 0 262 77 304 307 113 33 chrX 17646738 17646853 -144953077 + L1ME4a LINE L1 5653 5757 -364 2280 108 0 0 chrX 17646853 17647160 -144952770 + AluSx SINE Alu 1 307 -5 304 307 113 33 chrX 17647160 17647468 -144952462 + L1ME4a LINE L1 5757 6110 -11 2332 83 7 0 chrX 17647497 17647797 -144952133 + AluSx SINE Alu 2 303 -9 822 138 0 24 chrX 17648099 17648222 -144951708 - FLAM_C SINE Alu -23 120 1 306 233 39 35 chrX 17649955 17650121 -144949809 + MIR SINE MIR 23 184 -69 184 261 22 0 chrX 17650410 17650456 -144949474 + L2 LINE L2 3188 3234 -38 330 67 0 0 chrX 17650472 17650517 -144949413 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 1868 159 0 3 chrX 17650678 17650961 -144948969 - AluJb SINE Alu -30 282 1 463 269 43 0 chrX 17652463 17652604 -144947326 - MIR SINE MIR -77 185 39 211 246 49 16 chrX 17652703 17652764 -144947166 + L3 LINE CR1 843 905 -672 2134 124 0 31 chrX 17652907 17653229 -144946701 + AluSx SINE Alu 1 312 0 605 14 14 0 chrX 17704531 17704605 -144895325 + (TC)n Simple_repeat Simple_repeat 1 75 0 2175 104 0 0 chrX 17704631 17704911 -144895019 + AluY SINE Alu 5 284 -27 474 33 0 0 chrX 17704911 17704971 -144894959 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1956 157 3 3 chrX 17706109 17706408 -144893522 - AluJb SINE Alu -13 299 1 998 239 71 34 chrX 17706410 17706736 -144893194 - L1MC4 LINE L1 -139 7903 7566 930 100 0 0 chrX 17706750 17706880 -144893050 - L1MA2 LINE L1 -406 5898 5769 21 0 0 0 chrX 17706882 17706903 -144893027 + AT_rich Low_complexity Low_complexity 1 21 0 4393 94 13 8 chrX 17706903 17707511 -144892419 - L1MA2 LINE L1 0 6304 5694 1237 131 4 5 chrX 17707513 17707724 -144892206 + L1MA4A LINE L1 5931 6194 -109 1414 137 0 76 chrX 17707824 17708073 -144891857 - AluJb SINE Alu -82 230 1 333 156 56 33 chrX 17708653 17708743 -144891187 + L1P LINE L1 5302 5393 -761 5764 102 9 6 chrX 17708750 17709550 -144890380 - L1PA14 LINE L1 -37 6124 5323 2865 135 37 22 chrX 17710210 17710357 -144889573 + L1MB4 LINE L1 5678 5821 -359 1115 183 0 0 chrX 17710357 17710532 -144889398 + FAM SINE Alu 1 175 0 2865 135 37 22 chrX 17710532 17710874 -144889056 + L1MB4 LINE L1 5821 6174 -6 1403 198 57 43 chrX 17710887 17711096 -144888834 + L1MD3 LINE L1 7594 7812 -183 220 50 0 50 chrX 17711096 17711136 -144888794 + (TATAG)n Simple_repeat Simple_repeat 3 40 0 1403 198 57 43 chrX 17711136 17711294 -144888636 + L1MD3 LINE L1 7812 7966 -29 965 109 0 0 chrX 17711898 17712068 -144887862 + FLAM_C SINE Alu 1 170 0 226 240 24 54 chrX 17712138 17712224 -144887706 + MIR SINE MIR 110 193 -15 266 186 0 34 chrX 17713971 17714030 -144885900 - MER5B DNA MER1_type -7 171 115 2146 209 60 102 chrX 17714030 17714831 -144885099 + L1MC4 LINE L1 6784 7550 -492 1417 112 5 0 chrX 17714831 17715019 -144884911 + AluSx SINE Alu 1 189 -123 1362 103 0 6 chrX 17715119 17715293 -144884637 - AluSq SINE Alu -140 173 1 255 286 57 9 chrX 17715956 17716061 -144883869 + MIR SINE MIR 41 150 -58 246 108 0 0 chrX 17716251 17716288 -144883642 + MIR SINE MIR 219 255 -7 1367 71 0 12 chrX 17716771 17716941 -144882989 + AluSg1 SINE Alu 1 168 -141 494 16 0 16 chrX 17717045 17717109 -144882821 + (TG)n Simple_repeat Simple_repeat 2 64 0 295 347 41 25 chrX 17717967 17718088 -144881842 - L2 LINE L2 0 3272 3150 318 337 37 18 chrX 17718205 17718368 -144881562 - L1ME LINE L1 -386 5735 5570 239 222 0 0 chrX 17718459 17718513 -144881417 - L1ME LINE L1 -683 5438 5385 244 261 15 15 chrX 17718915 17718980 -144880950 + LTR37B LTR ERV1 12 76 -392 297 200 27 81 chrX 17719026 17719200 -144880730 + LTR37B LTR ERV1 76 242 -226 378 0 0 0 chrX 17720875 17720917 -144879013 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 264 224 149 0 chrX 17722556 17722623 -144877307 - MIR SINE MIR -64 144 68 4190 161 4 24 chrX 17723174 17723893 -144876037 + MER44D DNA MER2_type 1 705 0 441 156 0 39 chrX 17723893 17723970 -144875960 - Tigger7 DNA MER2_type -232 318 245 392 160 27 0 chrX 17724042 17724117 -144875813 - MIR SINE MIR -10 252 176 2609 165 136 4 chrX 17724222 17724744 -144875186 - L1MB7 LINE L1 -67 6117 5527 2278 237 8 9 chrX 17724742 17725371 -144874559 - L1M4 LINE L1 -2784 3362 2735 * 2227 89 0 3 chrX 17725388 17725670 -144874260 - AluY SINE Alu -30 281 1 332 222 0 0 chrX 17725670 17725733 -144874197 - L1M4 LINE L1 -3392 2754 2692 238 321 9 36 chrX 17725910 17726022 -144873908 - MIR SINE MIR -66 196 88 656 100 0 0 chrX 17726553 17726643 -144873287 - AluSg/x SINE Alu -12 298 209 1587 144 4 32 chrX 17726751 17727001 -144872929 - AluJo SINE Alu -67 245 3 2117 134 0 0 chrX 17727122 17727445 -144872485 - AluSx SINE Alu 0 323 1 2130 135 10 0 chrX 17727597 17727901 -144872029 - AluSx SINE Alu -5 307 1 455 262 8 91 chrX 17728242 17728505 -144871425 + HAL1 LINE L1 1912 2152 -355 830 188 0 0 chrX 17728505 17728649 -144871281 - MLT1C LTR MaLR 0 467 324 239 186 128 47 chrX 17728664 17728750 -144871180 + HAL1 LINE L1 2381 2473 -34 868 209 57 29 chrX 17729848 17730058 -144869872 + MER58A DNA MER1_type 1 216 -8 2278 97 0 26 chrX 17730058 17730367 -144869563 + AluSx SINE Alu 1 301 -11 2168 76 47 0 chrX 17730623 17730899 -144869031 - AluY SINE Alu -22 289 1 258 194 0 0 chrX 17730900 17730972 -144868958 - L1MB7 LINE L1 -959 5187 5116 557 120 136 24 chrX 17730977 17731112 -144868818 - MLT1D LTR MaLR -314 191 1 354 248 57 0 chrX 17731113 17731218 -144868712 + MIR SINE MIR 126 236 -26 192 77 0 0 chrX 17733343 17733369 -144866561 + (TATG)n Simple_repeat Simple_repeat 4 29 0 360 0 0 0 chrX 17734207 17734247 -144865683 + (TG)n Simple_repeat Simple_repeat 2 41 0 241 250 0 0 chrX 17734425 17734481 -144865449 - L1ME LINE L1 -395 5726 5671 1275 161 0 0 chrX 17734809 17735001 -144864929 - AluJo SINE Alu -20 292 101 215 245 164 69 chrX 17735561 17735720 -144864210 + MIR SINE MIR 72 245 -17 532 227 204 22 chrX 17736449 17736674 -144863256 + HAL1 LINE L1 1651 1916 -591 237 202 12 24 chrX 17736678 17736762 -144863168 + GA-rich Low_complexity Low_complexity 3 85 0 586 192 23 6 chrX 17736776 17736948 -144862982 + GA-rich Low_complexity Low_complexity 1 175 0 438 301 67 25 chrX 17737088 17737327 -144862603 + HAL1 LINE L1 2239 2487 -20 361 254 87 14 chrX 17737389 17737527 -144862403 - L1MC4a LINE L1 -1884 5924 5777 3118 150 58 81 chrX 17737581 17738273 -144861657 + LTR8 LTR ERV1 1 676 -15 867 302 89 27 chrX 17738617 17739068 -144860862 - L1MC4a LINE L1 -2070 5738 5260 1992 142 24 0 chrX 17739272 17739568 -144860362 + AluJb SINE Alu 1 303 -9 2038 87 6 87 chrX 17740347 17740668 -144859262 - AluSx SINE Alu -17 295 1 1345 198 62 56 chrX 17740748 17741071 -144858859 - MLT1D LTR MaLR -1 504 180 4425 162 63 22 chrX 17741083 17742025 -144857905 - L1MB4 LINE L1 0 6180 5185 1811 158 44 0 chrX 17742025 17742323 -144857607 - AluY SINE Alu 0 311 1 4425 162 63 22 chrX 17742323 17742392 -144857538 - L1MB4 LINE L1 -995 5185 5120 481 164 418 0 chrX 17742402 17742536 -144857394 - MLT1D LTR MaLR -315 190 1 588 215 82 0 chrX 17742695 17742830 -144857100 - L1MA9 LINE L1 -173 6139 5994 1502 190 105 38 chrX 17743294 17743944 -144855986 + L2 LINE L2 2422 3125 -188 21 0 0 0 chrX 17744319 17744340 -144855590 + AT_rich Low_complexity Low_complexity 1 21 0 494 226 57 0 chrX 17744371 17744495 -144855435 - MER5B DNA MER1_type -47 131 1 12057 209 49 31 chrX 17744500 17745720 -144854210 - L1MD2 LINE L1 0 6753 5557 1884 143 4 4 chrX 17745720 17745993 -144853937 + AluJb SINE Alu 1 273 -39 12057 209 49 31 chrX 17745993 17746710 -144853220 - L1MD2 LINE L1 -1196 5557 4854 1737 158 36 75 chrX 17746710 17746831 -144853099 + MER7A DNA MER2_type 2 126 -2912 2217 111 7 0 chrX 17746831 17747129 -144852801 - AluSx SINE Alu -12 300 1 1737 158 36 75 chrX 17747129 17747368 -144852562 + MER7A DNA MER2_type 126 346 0 12057 209 49 31 chrX 17747368 17748528 -144851402 - L1MD2 LINE L1 -1899 4854 3716 1711 174 0 51 chrX 17748528 17748844 -144851086 - AluJb SINE Alu -12 300 1 12057 209 49 31 chrX 17748844 17750303 -144849627 - L1MD2 LINE L1 -3037 3716 2123 2184 132 0 0 chrX 17750303 17750606 -144849324 + AluSx SINE Alu 1 303 -9 12057 209 49 31 chrX 17750606 17750729 -144849201 - L1MD2 LINE L1 -4630 2123 2004 1728 62 0 5 chrX 17750729 17750937 -144848993 - AluY SINE Alu -18 293 87 814 85 9 0 chrX 17751037 17751143 -144848787 - AluY SINE Alu -204 107 1 3887 189 63 10 chrX 17751143 17752206 -144847724 - L1MD2 LINE L1 -4529 2011 906 305 221 80 71 chrX 17752388 17752501 -144847429 - L1MD2 LINE L1 -5842 698 585 1704 191 121 14 chrX 17752540 17752998 -144846932 - MLT1E2 LTR MaLR -51 575 100 2121 113 14 0 chrX 17753141 17753434 -144846496 - AluSx SINE Alu -15 297 1 229 367 0 9 chrX 17754749 17754858 -144845072 + MIR SINE MIR 22 129 -133 2046 158 0 0 chrX 17754906 17755210 -144844720 + AluSx SINE Alu 1 304 -8 205 238 0 0 chrX 17755235 17755277 -144844653 + MIR SINE MIR 220 261 -1 1441 189 14 21 chrX 17755717 17755997 -144843933 + AluJb SINE Alu 5 282 -30 594 0 0 0 chrX 17756000 17756066 -144843864 + (CATAA)n Simple_repeat Simple_repeat 2 67 0 351 242 10 10 chrX 17756613 17756712 -144843218 + LTR37B LTR ERV1 328 426 -42 706 148 9 0 chrX 17756724 17756832 -144843098 + AluJo/FLAM SINE Alu 2 110 -202 2015 131 7 13 chrX 17756834 17757140 -144842790 + AluJo SINE Alu 3 306 -6 1155 219 144 14 chrX 17757388 17757748 -144842182 + L1ME2 LINE L1 5624 6030 -134 3613 78 74 34 chrX 17757768 17757799 -144842131 - MER41B LTR ERV1 -89 546 518 2069 92 88 0 chrX 17757799 17758082 -144841848 + AluSc SINE Alu 1 308 -1 3613 78 74 34 chrX 17758082 17758575 -144841355 - MER41B LTR ERV1 -117 518 1 471 220 47 93 chrX 17758595 17758745 -144841185 + L1ME3 LINE L1 6012 6154 -8 1847 150 24 41 chrX 17758807 17759101 -144840829 + AluJo SINE Alu 1 289 -23 2030 148 13 0 chrX 17759467 17759772 -144840158 + AluJb SINE Alu 1 309 -3 2356 94 3 0 chrX 17759842 17760141 -144839789 + AluSp SINE Alu 1 300 -13 203 306 20 10 chrX 17760614 17760712 -144839218 - MIR SINE MIR -3 259 161 336 232 171 18 chrX 17760712 17760876 -144839054 - LTR33 LTR ERVL -6 515 327 286 250 76 21 chrX 17760986 17761130 -144838800 - LTR33 LTR ERVL -332 189 38 225 350 0 51 chrX 17761437 17761594 -144838336 + C-rich Low_complexity Low_complexity 2 150 0 * 346 264 5 91 chrX 17761478 17761675 -144838255 + CT-rich Low_complexity Low_complexity 1 180 0 237 267 9 97 chrX 17761783 17762018 -144837912 + CT-rich Low_complexity Low_complexity 1 214 0 2282 85 7 36 chrX 17763081 17763388 -144836542 + AluSx SINE Alu 1 298 -14 261 139 0 0 chrX 17763930 17763973 -144835957 + (CA)n Simple_repeat Simple_repeat 2 44 0 189 0 0 0 chrX 17764444 17764465 -144835465 + (T)n Simple_repeat Simple_repeat 1 21 0 1333 223 207 29 chrX 17764654 17765190 -144834740 - MLT1G LTR MaLR 0 590 1 1855 140 3 3 chrX 17765266 17765551 -144834379 + AluJb SINE Alu 2 286 -26 408 306 65 0 chrX 17765560 17765684 -144834246 - L2 LINE L2 -5 3267 3136 2076 100 4 0 chrX 17766645 17766914 -144833016 + AluSx SINE Alu 28 297 -15 1314 201 70 72 chrX 17767179 17767399 -144832531 - L1MC5 LINE L1 -225 7736 7517 1965 118 44 30 chrX 17767399 17767695 -144832235 - AluSx SINE Alu -12 300 1 1314 201 70 72 chrX 17767695 17767991 -144831939 - L1MC5 LINE L1 -444 7517 7221 880 183 1 10 chrX 17767992 17768308 -144831622 + AluJo SINE Alu 1 280 -32 225 0 0 0 chrX 17768308 17768333 -144831597 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1221 176 51 16 chrX 17768338 17768593 -144831337 - L1MC5 LINE L1 -737 7224 6961 879 188 27 104 chrX 17768718 17769016 -144830914 - L1MC5 LINE L1 -1044 6917 6643 1868 137 46 3 chrX 17770752 17771037 -144828893 + AluSx SINE Alu 1 297 -15 2185 126 3 0 chrX 17771192 17771486 -144828444 + AluSx SINE Alu 1 295 -17 1122 127 0 0 chrX 17771592 17771750 -144828180 + AluSg/x SINE Alu 145 302 -10 296 224 60 60 chrX 17772215 17772331 -144827599 - MER5B DNA MER1_type -59 119 4 221 204 56 0 chrX 17772366 17772420 -144827510 + MER5A DNA MER1_type 40 96 -93 24 0 0 0 chrX 17773079 17773103 -144826827 + AT_rich Low_complexity Low_complexity 1 24 0 327 293 17 26 chrX 17773246 17773362 -144826568 + MIR SINE MIR 1 115 -147 2336 89 3 0 chrX 17773793 17774084 -144825846 + AluSx SINE Alu 1 292 -20 436 272 43 19 chrX 17774497 17774659 -144825271 + MIR SINE MIR 35 200 -62 1095 291 46 36 chrX 17775330 17775807 -144824123 - L1MCb LINE L1 -4992 1053 572 685 263 52 65 chrX 17776082 17776486 -144823444 - L1MCb LINE L1 -5669 376 93 2429 73 7 3 chrX 17776802 17777105 -144822825 + AluSc SINE Alu 1 304 -5 2161 111 3 43 chrX 17780106 17780251 -144819679 + AluJo SINE Alu 1 150 -162 2067 139 0 0 chrX 17780251 17780552 -144819378 + AluSx SINE Alu 1 301 -11 2161 111 3 43 chrX 17780552 17780730 -144819200 + AluJo SINE Alu 150 311 -1 247 108 31 46 chrX 17781212 17781232 -144818698 + L1MB2 LINE L1 6108 6127 -44 2249 120 0 0 chrX 17781232 17781533 -144818397 + AluSq SINE Alu 1 301 -12 247 108 31 46 chrX 17781533 17781577 -144818353 + L1MB2 LINE L1 6127 6171 0 432 104 0 0 chrX 17783134 17783201 -144816729 + (CA)n Simple_repeat Simple_repeat 1 67 0 2535 77 0 0 chrX 17783225 17783536 -144816394 + AluY SINE Alu 1 311 0 2169 47 8 0 chrX 17784041 17784295 -144815635 + AluY SINE Alu 2 257 -54 537 16 0 0 chrX 17784301 17784363 -144815567 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 26 50 0 0 chrX 17786126 17786166 -144813764 + AT_rich Low_complexity Low_complexity 1 40 0 1988 153 0 34 chrX 17786183 17786504 -144813426 - AluJo SINE Alu -2 310 1 833 202 51 0 chrX 17787404 17787582 -144812348 + MER5A DNA MER1_type 1 187 -2 2495 87 0 0 chrX 17787801 17788111 -144811819 + AluSg SINE Alu 1 310 0 200 111 28 0 chrX 17788589 17788625 -144811305 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1911 166 0 10 chrX 17788664 17788965 -144810965 + AluJb SINE Alu 1 298 -14 7886 16 0 2 chrX 17789080 17790482 -144809448 - L1PA2 LINE L1 -3 6152 4766 420 244 130 37 chrX 17790574 17790813 -144809117 + L1ME4a LINE L1 5628 5885 -236 198 91 30 0 chrX 17790890 17790923 -144809007 - MER5A DNA MER1_type -114 75 42 1827 176 3 3 chrX 17790985 17791280 -144808650 + AluJb SINE Alu 1 295 -17 791 223 56 44 chrX 17791282 17791533 -144808397 + L1MB8 LINE L1 5919 6172 -6 1221 206 117 57 chrX 17791645 17792082 -144807848 + MLT1C LTR MaLR 1 463 -4 1668 125 26 68 chrX 17792474 17792785 -144807145 + AluJb SINE Alu 1 298 -14 2269 136 29 0 chrX 17792917 17793291 -144806639 - L1MA5 LINE L1 -7 6293 5909 195 42 0 0 chrX 17794234 17794258 -144805672 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2146 93 18 14 chrX 17794261 17794541 -144805389 - AluSx SINE Alu -31 281 1 268 303 0 0 chrX 17794557 17794633 -144805297 - MIR3 SINE MIR -1 207 132 1665 140 0 38 chrX 17794900 17795165 -144804765 + AluJb SINE Alu 33 287 -25 2651 157 7 2 chrX 17795290 17795729 -144804201 + L1MB2 LINE L1 5724 6164 -7 318 206 20 103 chrX 17795889 17796035 -144803895 + L1MC5 LINE L1 7759 7892 -69 730 216 77 26 chrX 17796402 17796596 -144803334 - L1MC4a LINE L1 -1894 5914 5711 228 218 18 0 chrX 17797427 17797482 -144802448 - L2 LINE L2 -252 3061 3006 2340 116 67 84 chrX 17797582 17797758 -144802172 + MLT1C LTR MaLR 1 178 -289 960 184 0 0 chrX 17797758 17797921 -144802009 + FRAM SINE Alu 4 166 0 2340 116 67 84 chrX 17797921 17798219 -144801711 + MLT1C LTR MaLR 178 467 0 23 0 0 0 chrX 17798451 17798474 -144801456 + AT_rich Low_complexity Low_complexity 1 23 0 2237 118 0 16 chrX 17798476 17798791 -144801139 + AluSg SINE Alu 1 310 0 1890 121 43 63 chrX 17799016 17799364 -144800566 - MLT1B LTR MaLR -4 386 46 492 283 114 42 chrX 17800722 17801083 -144798847 + L1ME4a LINE L1 5653 6039 -82 1121 152 13 65 chrX 17801372 17801467 -144798463 + MER20 DNA MER1_type 1 99 -120 188 65 0 32 chrX 17801467 17801498 -144798432 + (CGGGGG)n Simple_repeat Simple_repeat 5 34 0 1121 152 13 65 chrX 17801498 17801633 -144798297 + MER20 DNA MER1_type 99 219 0 1851 167 0 20 chrX 17801706 17802006 -144797924 + AluJb SINE Alu 1 294 -18 216 0 0 0 chrX 17802006 17802030 -144797900 + (TA)n Simple_repeat Simple_repeat 2 25 0 279 246 35 53 chrX 17802075 17802189 -144797741 + MIR SINE MIR 36 147 -115 359 252 32 16 chrX 17802520 17802643 -144797287 + MIR SINE MIR 12 136 -126 398 248 25 16 chrX 17802672 17802793 -144797137 + MER94 DNA DNA 13 134 0 1897 126 10 34 chrX 17802807 17803101 -144796829 + AluJb SINE Alu 2 288 -24 2378 68 0 7 chrX 17803115 17803433 -144796497 + AluY SINE Alu 1 311 0 224 268 196 0 chrX 17803433 17803530 -144796400 + MIR SINE MIR 147 262 0 424 221 71 0 chrX 17804477 17804590 -144795340 + L1ME3A LINE L1 6042 6162 -8 461 287 134 15 chrX 17804675 17804877 -144795053 - MER112 DNA MER1_type -12 248 23 366 284 68 41 chrX 17804899 17805083 -144794847 + MIR SINE MIR 7 194 -65 641 308 80 49 chrX 17805688 17806175 -144793755 - L2 LINE L2 -4 3309 2808 306 0 0 0 chrX 17806585 17806619 -144793311 + (CA)n Simple_repeat Simple_repeat 2 35 0 2203 117 0 10 chrX 17806773 17807081 -144792849 - AluJb SINE Alu -7 305 1 208 283 80 59 chrX 17807557 17807744 -144792186 - MIR SINE MIR -55 207 17 285 301 61 39 chrX 17809917 17810146 -144789784 + MLT1K LTR MaLR 346 579 -9 920 180 68 10 chrX 17810273 17810479 -144789451 + L1MB7 LINE L1 5966 6183 -1 2050 134 0 7 chrX 17810488 17810772 -144789158 + AluSx SINE Alu 1 282 -30 1761 133 0 8 chrX 17810805 17811060 -144788870 + AluSx SINE Alu 1 253 -59 32 0 0 0 chrX 17811060 17811092 -144788838 + AT_rich Low_complexity Low_complexity 1 32 0 249 284 27 0 chrX 17811605 17811679 -144788251 + MLT2F LTR ERVL 333 408 -255 1228 190 136 8 chrX 17811947 17812205 -144787725 - AluJo SINE Alu -21 291 1 183 42 0 0 chrX 17812443 17812467 -144787463 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 1033 75 0 0 chrX 17812586 17812706 -144787224 + AluY SINE Alu 1 120 -191 1329 205 106 27 chrX 17812807 17813211 -144786719 + Charlie4a DNA MER1_type 49 484 -24 1641 181 14 24 chrX 17813266 17813559 -144786371 + AluJo SINE Alu 1 290 -22 564 95 0 0 chrX 17814081 17814165 -144785765 + (TG)n Simple_repeat Simple_repeat 2 85 0 1872 153 52 0 chrX 17814404 17814523 -144785407 + AluJb SINE Alu 3 114 -198 216 0 0 0 chrX 17814523 17814547 -144785383 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1872 153 52 0 chrX 17814547 17814714 -144785216 + AluJb SINE Alu 114 304 -8 605 276 84 21 chrX 17814741 17815027 -144784903 + L1MC4a LINE L1 5621 5924 -1884 1319 179 9 5 chrX 17816020 17816243 -144783687 - MER58A DNA MER1_type 0 224 1 213 206 0 59 chrX 17816335 17816403 -144783527 + L2 LINE L2 3015 3078 -194 184 309 43 21 chrX 17816626 17816720 -144783210 - L2 LINE L2 -825 2489 2394 1961 135 0 55 chrX 17816720 17817046 -144782884 + AluJo SINE Alu 1 308 -4 433 294 17 24 chrX 17817789 17817958 -144781972 + MIR SINE MIR 17 185 -62 581 67 45 11 chrX 17818028 17818117 -144781813 - L1PA13 LINE L1 0 6163 6072 228 130 0 43 chrX 17818147 17818193 -144781737 + MLT1E3 LTR MaLR 568 611 -13 3190 107 57 2 chrX 17818690 17819178 -144780752 - L1MB3 LINE L1 -2 6181 5667 2011 107 36 4 chrX 17819253 17819533 -144780397 + AluSc SINE Alu 1 289 -20 1410 138 35 13 chrX 17819672 17819903 -144780027 - MER46A DNA MER2_type 0 236 1 258 333 60 0 chrX 17820457 17820541 -144779389 - MIR SINE MIR -60 148 60 240 214 0 0 chrX 17821295 17821351 -144778579 + GA-rich Low_complexity Low_complexity 4 59 0 489 260 0 0 chrX 17821775 17821879 -144778051 + AluJo SINE Alu 33 136 -176 2400 77 3 0 chrX 17822465 17822788 -144777142 - AluSq SINE Alu 0 324 1 1179 117 31 0 chrX 17823653 17823849 -144776081 - L1MA6 LINE L1 0 6300 6099 711 430 0 78 chrX 17823871 17824129 -144775801 + MER8 DNA MER2_type 2 239 0 369 0 0 0 chrX 17824165 17824206 -144775724 + (CA)n Simple_repeat Simple_repeat 2 42 0 408 277 139 36 chrX 17824889 17825163 -144774767 + L1ME LINE L1 4733 5034 -1112 653 247 49 22 chrX 17825458 17825681 -144774249 + L1ME LINE L1 5519 5747 -374 218 109 65 0 chrX 17825997 17826043 -144773887 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 8674 106 27 12 chrX 17826078 17827358 -144772572 - HSMAR2 DNA Mariner -3 1299 2 1123 142 0 19 chrX 17827823 17827985 -144771945 - FRAM SINE Alu -20 156 1 1824 177 79 60 chrX 17828917 17829413 -144770517 + MLT1D LTR MaLR 1 505 0 1943 123 53 17 chrX 17831042 17831343 -144768587 + AluJo SINE Alu 1 312 0 204 244 58 23 chrX 17831682 17831768 -144768162 - L2 LINE L2 -1 3271 3183 452 202 0 39 chrX 17832550 17832654 -144767276 - MLT1A2 LTR MaLR -274 100 1 258 111 0 0 chrX 17833206 17833242 -144766688 + Tigger5 DNA MER2_type 2262 2297 -26 * 369 294 18 9 chrX 17833222 17833331 -144766599 - MER47A DNA MER2_type -256 110 1 1944 183 138 20 chrX 17833353 17833801 -144766129 + MLT1D LTR MaLR 4 504 -1 530 283 81 9 chrX 17833814 17834037 -144765893 + MLT1J LTR MaLR 68 306 -205 414 282 155 8 chrX 17834352 17834604 -144765326 + L1ME3 LINE L1 5542 5830 -332 1953 151 0 10 chrX 17834863 17835167 -144764763 - AluJb SINE Alu -11 301 1 1271 168 0 24 chrX 17835988 17836196 -144763734 - AluJb SINE Alu -109 203 1 399 190 13 0 chrX 17837122 17837201 -144762729 + MER103 DNA DNA 41 120 -46 189 0 0 0 chrX 17837680 17837701 -144762229 + (A)n Simple_repeat Simple_repeat 1 21 0 2358 106 0 0 chrX 17837713 17838024 -144761906 + AluSx SINE Alu 1 311 -1 587 204 114 48 chrX 17838224 17838391 -144761539 + MER97a DNA MER1_type? 1 178 -716 2115 152 0 0 chrX 17841076 17841385 -144758545 - AluJo SINE Alu -3 309 1 385 75 94 0 chrX 17841544 17841624 -144758306 - AluSp/q SINE Alu 0 313 229 1728 147 6 69 chrX 17842110 17842443 -144757487 + AluJb SINE Alu 1 312 0 854 213 107 0 chrX 17845989 17846158 -144753772 + MER58A DNA MER1_type 38 224 0 4682 156 19 31 chrX 17847962 17848826 -144751104 + L1MB4 LINE L1 5326 6178 -2 325 230 262 21 chrX 17848847 17849034 -144750896 - MIR SINE MIR 0 262 31 374 253 0 0 chrX 17849134 17849209 -144750721 - AluSp SINE Alu -106 197 123 2272 96 7 20 chrX 17849340 17849642 -144750288 - AluSx SINE Alu -14 298 1 2913 83 5 5 chrX 17850488 17850863 -144749067 + THE1C LTR MaLR 1 375 0 2069 90 101 0 chrX 17851220 17851498 -144748432 - AluSx SINE Alu -6 306 1 200 0 0 91 chrX 17851527 17851560 -144748370 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 774 160 0 7 chrX 17851665 17851809 -144748121 + L1M4 LINE L1 4973 5115 -1031 369 0 0 0 chrX 17851817 17851858 -144748072 + (CAA)n Simple_repeat Simple_repeat 2 42 0 360 314 38 22 chrX 17851891 17852076 -144747854 + Charlie7 DNA MER1_type 50 237 -2375 662 292 147 59 chrX 17852259 17852364 -144747566 + Charlie7 DNA MER1_type 365 459 -2153 2352 97 10 0 chrX 17852364 17852672 -144747258 + AluSq SINE Alu 1 311 -2 662 292 147 59 chrX 17852672 17853022 -144746908 + Charlie7 DNA MER1_type 459 860 -1752 1489 137 0 0 chrX 17853097 17853309 -144746621 - AluJb SINE Alu -15 297 86 181 212 0 0 chrX 17853509 17853542 -144746388 + L2 LINE L2 3267 3299 -14 1236 186 84 7 chrX 17853879 17854188 -144745742 + MER33 DNA MER1_type 1 319 -5 348 319 12 60 chrX 17855323 17855489 -144744441 - MIR3 SINE MIR -21 187 30 807 217 85 19 chrX 17855679 17855891 -144744039 + L1MB8 LINE L1 5944 6169 -9 211 258 6 101 chrX 17856302 17856512 -144743418 - MIR SINE MIR -50 212 22 264 275 38 24 chrX 17857719 17857882 -144742048 + MIR SINE MIR 33 197 -62 1197 244 82 0 chrX 17857930 17858252 -144741678 + L1ME3 LINE L1 5798 6161 -1 1207 116 0 6 chrX 17860072 17860236 -144739694 - AluSq SINE Alu -92 221 59 2237 102 3 3 chrX 17860617 17860920 -144739010 + AluSg SINE Alu 4 306 -4 237 236 106 24 chrX 17861043 17861146 -144738784 + L1MC4a LINE L1 5293 5409 -2399 2711 138 54 33 chrX 17861146 17861626 -144738304 + LTR2B LTR ERV1 1 490 0 237 236 106 24 chrX 17861626 17861645 -144738285 + L1MC4a LINE L1 5409 5425 -2383 228 156 22 0 chrX 17861745 17861790 -144738140 + (CTATA)n Simple_repeat Simple_repeat 3 48 0 1096 281 82 27 chrX 17861964 17862441 -144737489 + L1MC4a LINE L1 5423 5925 -1883 180 0 0 0 chrX 17862671 17862691 -144737239 + (T)n Simple_repeat Simple_repeat 1 20 0 1793 144 37 43 chrX 17862700 17863048 -144736882 + MER4A LTR ERV1 1 346 -318 690 150 225 67 chrX 17863068 17863335 -144736595 + MER4C LTR ERV1 157 465 0 2215 94 0 7 chrX 17863569 17863857 -144736073 + AluSx SINE Alu 1 286 -26 292 261 157 17 chrX 18064650 18064765 -144535165 - L2 LINE L2 -1 3271 3141 2625 53 0 0 chrX 18064895 18065196 -144534734 - AluY SINE Alu -9 302 2 1595 147 36 0 chrX 18065661 18065912 -144534018 + AluJo SINE Alu 1 260 -52 751 146 8 31 chrX 18065936 18066066 -144533864 + FLAM_A SINE Alu 1 127 -6 2422 132 37 42 chrX 18066156 18066226 -144533704 - L1MB7 LINE L1 -1 6183 6114 2481 46 30 7 chrX 18066226 18066528 -144533402 - AluYa5 SINE Alu -2 309 1 2422 132 37 42 chrX 18066528 18066753 -144533177 - L1MB7 LINE L1 -70 6114 5888 2233 107 23 0 chrX 18066753 18067053 -144532877 - AluSx SINE Alu -5 307 1 2422 132 37 42 chrX 18067053 18067211 -144532719 - L1MB7 LINE L1 -296 5888 5731 2379 101 0 3 chrX 18067472 18067780 -144532150 - AluSp SINE Alu -6 307 1 1998 144 3 3 chrX 18068198 18068504 -144531426 - AluSq SINE Alu -7 306 1 637 85 43 0 chrX 18068844 18068938 -144530992 + L1MA5A LINE L1 6200 6297 0 455 259 85 12 chrX 18069099 18069320 -144530610 - L1MC/D LINE L1 -384 5737 5573 1212 187 134 26 chrX 18069545 18069850 -144530080 - MER58B DNA MER1_type -3 338 1 1603 100 9 26 chrX 18069868 18070099 -144529831 + AluJo SINE Alu 86 312 0 296 312 43 0 chrX 18070226 18070319 -144529611 - MIR3 SINE MIR -12 196 100 2395 106 0 6 chrX 18070446 18070758 -144529172 + AluSx SINE Alu 1 310 -2 273 200 25 38 chrX 18070776 18070856 -144529074 + L1ME2 LINE L1 6085 6163 -1 21 36 0 0 chrX 18070869 18070897 -144529033 + AT_rich Low_complexity Low_complexity 1 28 0 827 136 0 0 chrX 18070897 18071015 -144528915 - FLAM_C SINE Alu -25 118 1 1432 164 8 16 chrX 18071630 18071807 -144528123 - AluJo SINE Alu -9 303 127 2373 95 3 0 chrX 18071807 18072103 -144527827 - AluSx SINE Alu -15 297 1 1432 164 8 16 chrX 18072103 18072175 -144527755 - AluJo SINE Alu -185 127 56 307 140 20 0 chrX 18072190 18072240 -144527690 - MER58 DNA MER1_type -13 2407 2357 * 756 179 7 14 chrX 18072235 18072375 -144527555 - MER58 DNA MER1_type -2171 249 111 2354 93 3 0 chrX 18072616 18072918 -144527012 + AluSx SINE Alu 1 303 -9 573 266 82 33 chrX 18074013 18074257 -144525673 + MIR SINE MIR 7 262 0 2359 111 0 0 chrX 18074507 18074813 -144525117 + AluSx SINE Alu 5 310 -2 753 261 75 0 chrX 18075592 18075791 -144524139 - Charlie8 DNA MER1_type -2141 276 63 577 93 0 0 chrX 18076080 18076155 -144523775 - MADE1 DNA Mariner 0 80 6 2632 110 38 33 chrX 18076575 18076767 -144523163 - L1MB2 LINE L1 -2 6169 5979 2260 109 7 0 chrX 18076767 18077069 -144522861 - AluSq SINE Alu -9 304 1 2632 110 38 33 chrX 18077069 18077105 -144522825 - L1MB2 LINE L1 -192 5979 5945 4084 161 131 3 chrX 18077105 18077837 -144522093 + LTR1B LTR ERV1 1 826 0 2632 110 38 33 chrX 18077837 18078060 -144521870 - L1MB2 LINE L1 -226 5945 5715 254 304 8 32 chrX 18078626 18078751 -144521179 + MER5B DNA MER1_type 4 125 -53 207 266 0 31 chrX 18079009 18079073 -144520857 - L2 LINE L2 -5 3308 3247 2337 68 54 3 chrX 18079078 18079372 -144520558 + AluSc SINE Alu 1 309 0 4897 74 21 3 chrX 18079389 18080048 -144519882 + L1MA2 LINE L1 5634 6304 0 861 206 38 0 chrX 18080185 18080369 -144519561 - MIR SINE MIR -43 219 29 2171 104 13 29 chrX 18080729 18081045 -144518885 - AluSx SINE Alu -1 311 1 279 0 0 0 chrX 18081690 18081721 -144518209 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1438 41 6 0 chrX 18081721 18081892 -144518038 - L1PA6 LINE L1 -18 6136 5965 675 238 42 5 chrX 18082104 18082293 -144517637 - L1ME LINE L1 -329 5792 5597 251 338 28 14 chrX 18082337 18082479 -144517451 + MIR3 SINE MIR 3 146 -62 395 259 97 73 chrX 18083463 18083710 -144516220 - MLT1L LTR MaLR 0 615 363 241 331 29 34 chrX 18083846 18084021 -144515909 - MLT1L LTR MaLR -434 181 8 4812 156 67 12 chrX 18084274 18085218 -144514712 + L1MB7 LINE L1 5193 6175 -9 2337 97 0 0 chrX 18086173 18086462 -144513468 + AluSx SINE Alu 1 289 -23 946 150 75 21 chrX 18087057 18087244 -144512686 + MER58B DNA MER1_type 1 197 -144 2843 128 14 11 chrX 18087246 18087683 -144512247 - MER39 LTR ERV1 -2 705 268 272 178 327 20 chrX 18087669 18087770 -144512160 - MER39 LTR ERV1 -575 132 1 * 290 119 0 0 chrX 18087770 18087812 -144512118 + MER58B DNA MER1_type 194 235 -106 1718 165 14 17 chrX 18087815 18087978 -144511952 - AluJb SINE Alu -16 296 133 2273 105 0 3 chrX 18087978 18088273 -144511657 - AluSg SINE Alu -16 294 1 1718 165 14 17 chrX 18088273 18088406 -144511524 - AluJb SINE Alu -179 133 1 734 167 30 15 chrX 18088406 18088538 -144511392 - AluJb SINE Alu -177 135 2 599 155 8 85 chrX 18088538 18088667 -144511263 + MER58B DNA MER1_type 223 341 0 1014 137 47 71 chrX 18088857 18088942 -144510988 - MER20 DNA MER1_type 0 219 134 1752 80 27 0 chrX 18088942 18089166 -144510764 - MER30 DNA MER1_type 0 230 1 1014 137 47 71 chrX 18089166 18089277 -144510653 - MER20 DNA MER1_type -85 134 26 1958 149 17 0 chrX 18089277 18089565 -144510365 + AluJb SINE Alu 1 293 -19 1014 137 47 71 chrX 18089565 18089578 -144510352 - MER20 DNA MER1_type -193 26 14 333 251 153 38 chrX 18090205 18090388 -144509542 - MIR SINE MIR -11 251 48 558 168 286 12 chrX 18091462 18091623 -144508307 + MER3 DNA MER1_type 1 205 -4 4827 96 20 23 chrX 18091636 18091689 -144508241 - L1PA16 LINE L1 0 6166 6114 2083 155 0 0 chrX 18091689 18091999 -144507931 - AluJb SINE Alu -2 310 1 4827 96 20 23 chrX 18091999 18092653 -144507277 - L1PA16 LINE L1 -52 6114 5461 253 271 81 55 chrX 18093913 18094334 -144505596 - L1M4 LINE L1 -757 5389 4958 1989 149 0 23 chrX 18094555 18094863 -144505067 - AluJo SINE Alu -11 301 1 201 39 0 0 chrX 18094917 18094943 -144504987 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 2084 128 0 7 chrX 18094943 18095239 -144504691 - AluSx SINE Alu -18 294 1 2111 99 35 0 chrX 18096116 18096400 -144503530 + AluSx SINE Alu 1 294 -18 1643 245 56 47 chrX 18097342 18097423 -144502507 - MER68 LTR ERV1 0 562 483 2250 95 0 0 chrX 18097423 18097728 -144502202 - AluSq SINE Alu 0 305 1 1643 245 56 47 chrX 18097728 18098197 -144501733 - MER68 LTR ERV1 -79 483 6 644 142 159 0 chrX 18098510 18098623 -144501307 - FLAM_C SINE Alu -2 131 1 303 224 122 9 chrX 18099403 18099510 -144500420 - L1ME4a LINE L1 -24 6097 5979 226 180 20 0 chrX 18099607 18099657 -144500273 - L1MC4 LINE L1 -1 8041 7991 2269 71 3 7 chrX 18099708 18100041 -144499889 - AluSg1 SINE Alu 0 332 1 1580 206 145 19 chrX 18100041 18100518 -144499412 + L1MC4 LINE L1 6777 7313 -729 216 250 74 37 chrX 18100596 18100704 -144499226 - L2 LINE L2 -3 3269 3158 469 277 118 36 chrX 18101216 18101436 -144498494 + MIR SINE MIR 24 261 -1 239 260 125 10 chrX 18101469 18101565 -144498365 + L2 LINE L2 2590 2696 -618 2082 121 24 0 chrX 18103100 18103389 -144496541 + AluSx SINE Alu 1 296 -16 2526 84 3 0 chrX 18103399 18103710 -144496220 + AluSp SINE Alu 2 313 0 9459 38 0 0 chrX 18103935 18105074 -144494856 - L1P LINE L1 -1977 4169 3031 9812 26 1 3 chrX 18105074 18106985 -144492945 + L1PA3 LINE L1 4247 6155 0 2005 122 3 17 chrX 18107001 18107295 -144492635 + AluJo SINE Alu 1 290 -22 1211 158 10 10 chrX 18107377 18107586 -144492344 + MER3 DNA MER1_type 1 209 0 1685 104 30 4 chrX 18107607 18107837 -144492093 + AluSx SINE Alu 39 274 -38 27 0 0 0 chrX 18107845 18107872 -144492058 + AT_rich Low_complexity Low_complexity 1 27 0 270 0 0 0 chrX 18107982 18108012 -144491918 + (TG)n Simple_repeat Simple_repeat 2 31 0 2627 47 0 0 chrX 18109727 18110027 -144489903 - AluY SINE Alu -11 300 1 332 165 66 44 chrX 18110816 18110907 -144489023 - MER39 LTR ERV1 -3 704 612 580 206 20 0 chrX 18110945 18111047 -144488883 + FLAM_A SINE Alu 12 115 -27 969 210 61 90 chrX 18111103 18111479 -144488451 - MER39 LTR ERV1 -83 624 260 287 125 42 0 chrX 18111464 18111512 -144488418 - MER34 LTR ERV1 -428 114 65 * 362 156 47 0 chrX 18111570 18111634 -144488296 - MER58A DNA MER1_type 0 224 158 309 200 0 0 chrX 18111634 18111684 -144488246 - MER34 LTR ERV1 -492 50 1 1086 162 29 0 chrX 18112698 18112871 -144487059 - MER58A DNA MER1_type 0 224 47 337 0 0 59 chrX 18112926 18112977 -144486953 + (TAAAA)n Simple_repeat Simple_repeat 5 52 0 511 174 11 0 chrX 18113869 18113961 -144485969 + MER96B DNA MER1_type? 2 94 -323 2349 117 59 0 chrX 18113961 18114302 -144485628 - MER46B DNA MER2_type 0 236 1 1598 171 35 11 chrX 18114310 18114597 -144485333 - L1MB5 LINE L1 -1 6173 5880 2919 87 5 35 chrX 18114598 18115000 -144484930 + LTR35 LTR ERV1 1 390 -228 456 125 14 0 chrX 18114992 18115064 -144484866 + LTR35 LTR ERV1 542 614 -4 * 1241 154 170 4 chrX 18115068 18115321 -144484609 - L1MB5 LINE L1 -292 5882 5588 336 148 0 93 chrX 18115321 18115369 -144484561 + MER96B DNA MER1_type? 82 116 -301 2437 80 0 3 chrX 18115369 18115670 -144484260 + AluSg SINE Alu 1 300 -10 336 148 0 93 chrX 18115670 18115729 -144484201 + MER96B DNA MER1_type? 116 179 -238 3827 134 34 23 chrX 18116482 18117102 -144482828 - MER41B LTR ERV1 -8 627 1 3073 154 27 20 chrX 18117193 18117744 -144482186 + LTR35 LTR ERV1 64 618 0 21 0 0 0 chrX 18117812 18117833 -144482097 + AT_rich Low_complexity Low_complexity 1 21 0 1814 171 13 7 chrX 18118163 18118461 -144481469 + AluJb SINE Alu 1 300 -12 2210 104 3 7 chrX 18118712 18119010 -144480920 + AluSg SINE Alu 1 297 -13 651 186 52 81 chrX 18119012 18119222 -144480708 - MER39 LTR ERV1 0 707 504 1541 142 0 13 chrX 18119225 18119457 -144480473 - MER4A LTR ERV1 0 664 436 1950 136 108 180 chrX 18119458 18120174 -144479756 - MER4A LTR ERV1 0 664 1 17367 83 56 19 chrX 18120182 18122758 -144477172 - MER4A-int LTR ERV1 -2 6596 3925 2239 74 81 7 chrX 18122758 18123124 -144476806 + LTR7 LTR ERV1 1 450 0 364 214 71 0 chrX 18123124 18123208 -144476722 - MER4A-int LTR ERV1 -2672 3926 3837 * 905 178 35 20 chrX 18123207 18123409 -144476521 - MER4A-int LTR ERV1 -2917 3681 3477 1063 136 90 0 chrX 18123410 18123587 -144476343 + LTR8 LTR ERV1 65 257 -434 4568 73 65 10 chrX 18123587 18124281 -144475649 - MER4A-int LTR ERV1 -4103 2495 1764 4702 89 29 27 chrX 18124295 18125223 -144474707 - MER4A-int LTR ERV1 -5580 1178 194 1170 201 139 13 chrX 18125277 18125561 -144474369 - MER4A-int LTR ERV1 -4163 2168 1265 2571 114 97 78 chrX 18125621 18126282 -144473648 - MER4A-int LTR ERV1 -5758 840 1 1241 107 11 11 chrX 18126285 18126463 -144473467 - MER4A LTR ERV1 0 664 487 4953 91 222 115 chrX 18126466 18127819 -144472111 - pTR5 LTR ERV1 -5 2433 827 466 184 7 4 chrX 18127821 18127968 -144471962 - MER4A LTR ERV1 -198 466 261 645 121 0 10 chrX 18127968 18128067 -144471863 - MER4A LTR ERV1 -566 98 1 632 249 60 63 chrX 18128073 18128375 -144471555 - MER34 LTR ERV1 -209 498 1 1479 112 19 0 chrX 18128402 18128616 -144471314 - L1PA16 LINE L1 -9 6157 5940 2063 144 0 3 chrX 18129497 18129810 -144470120 - AluSx SINE Alu 0 312 1 908 154 123 0 chrX 18129963 18130125 -144469805 + MER58A DNA MER1_type 43 224 0 1282 177 34 58 chrX 18130913 18131000 -144468930 - MER33 DNA MER1_type -2265 320 232 2063 139 20 0 chrX 18131000 18131295 -144468635 + AluSx SINE Alu 1 301 -11 1282 177 34 58 chrX 18131295 18131506 -144468424 - MER33 DNA MER1_type -2353 232 28 4113 134 60 87 chrX 18131506 18132313 -144467617 - LTR1 LTR ERV1 0 785 1 1282 177 34 58 chrX 18132313 18132341 -144467589 - MER33 DNA MER1_type -2557 28 1 1835 147 97 91 chrX 18132370 18132420 -144467510 - MER31B LTR ERV1 0 466 418 1794 157 11 4 chrX 18132420 18132751 -144467179 + AluJb SINE Alu 2 334 0 1835 147 97 91 chrX 18132751 18133162 -144466768 - MER31B LTR ERV1 -48 418 1 1359 145 37 0 chrX 18133446 18133660 -144466270 - AluJb SINE Alu -9 303 82 1950 157 0 3 chrX 18134208 18134502 -144465428 + AluJb SINE Alu 1 293 -19 1921 168 23 17 chrX 18135147 18135499 -144464431 + MLT1A1 LTR MaLR 1 354 -11 289 189 7 122 chrX 18136693 18136841 -144463089 + L1ME4a LINE L1 5991 6121 0 2445 71 0 0 chrX 18136844 18137141 -144462789 + AluY SINE Alu 1 297 -14 2467 81 0 3 chrX 18137231 18137540 -144462390 - AluSx SINE Alu 0 312 5 1695 191 10 3 chrX 18137551 18137839 -144462091 - AluJo SINE Alu -21 291 2 564 314 126 34 chrX 18137963 18138477 -144461453 - L1ME3A LINE L1 -291 5879 5279 345 140 0 0 chrX 18138477 18138534 -144461396 + (TG)n Simple_repeat Simple_repeat 2 58 0 768 105 32 8 chrX 18138535 18138659 -144461271 - L1MB8 LINE L1 -3 6175 6049 880 140 29 0 chrX 18138660 18138796 -144461134 + FLAM_C SINE Alu 1 140 -3 889 145 86 43 chrX 18138796 18138982 -144460948 - L1MB8 LINE L1 -124 6054 5861 2714 25 0 22 chrX 18139072 18139387 -144460543 + AluY SINE Alu 1 308 -3 242 264 40 32 chrX 18139537 18139662 -144460268 + L1ME4a LINE L1 5947 6072 -49 1068 184 6 0 chrX 18139882 18140061 -144459869 - MER5A DNA MER1_type -9 180 1 677 220 58 65 chrX 18140066 18140208 -144459722 - L1MC5 LINE L1 -151 7810 7669 2478 65 0 3 chrX 18140208 18140514 -144459416 + AluY SINE Alu 1 305 -6 677 220 58 65 chrX 18140514 18140594 -144459336 - L1MC5 LINE L1 -292 7669 7590 432 37 0 0 chrX 18140594 18140648 -144459282 + (TA)n Simple_repeat Simple_repeat 2 55 0 677 220 58 65 chrX 18140648 18140733 -144459197 - L1MC5 LINE L1 -371 7590 7504 2557 61 0 13 chrX 18140747 18141057 -144458873 + AluSg1 SINE Alu 1 306 -3 808 165 8 8 chrX 18141746 18141873 -144458057 - FLAM_A SINE Alu -6 127 1 189 0 0 0 chrX 18142426 18142447 -144457483 + (TG)n Simple_repeat Simple_repeat 1 21 0 373 182 71 83 chrX 18142518 18142671 -144457259 - MLT1I LTR MaLR 0 538 316 213 178 0 0 chrX 18143844 18143889 -144456041 + GA-rich Low_complexity Low_complexity 2 46 0 580 224 235 0 chrX 18144026 18144222 -144455708 - LTR33 LTR ERVL -1 520 279 2016 221 24 44 chrX 18144222 18144725 -144455205 + MLT2B1 LTR ERVL 28 520 0 611 283 116 17 chrX 18144738 18144971 -144454959 - LTR33 LTR ERVL -252 269 14 1486 106 0 14 chrX 18145341 18145588 -144454342 - AluSg/x SINE Alu 0 326 83 861 105 0 0 chrX 18145588 18145702 -144454228 - AluSq SINE Alu -63 250 137 2390 92 0 0 chrX 18145705 18146011 -144453919 - AluSx SINE Alu -6 306 1 427 265 142 35 chrX 18146094 18146436 -144453494 - L1ME3A LINE L1 -262 5904 5535 * 1297 257 66 43 chrX 18146434 18146495 -144453435 + L1ME3A LINE L1 5129 5187 -983 2487 157 80 5 chrX 18146495 18146922 -144453008 - LOR1b LTR ERV1 0 461 3 1297 257 66 43 chrX 18146922 18147069 -144452861 + L1ME3A LINE L1 5187 5329 -841 1751 186 7 0 chrX 18147069 18147359 -144452571 + AluJb SINE Alu 1 292 -20 1297 257 66 43 chrX 18147359 18147767 -144452163 + L1ME3A LINE L1 5329 5759 -411 1000 301 22 6 chrX 18147775 18148097 -144451833 + L1ME3A LINE L1 5836 6162 -8 402 227 194 26 chrX 18148110 18148333 -144451597 + L1M4 LINE L1 2848 3137 -3009 3953 92 0 8 chrX 18148333 18148846 -144451084 - L1PA13 LINE L1 -10 6153 5645 402 227 194 26 chrX 18148846 18148926 -144451004 + L1M4 LINE L1 3137 3202 -2944 374 252 71 47 chrX 18149024 18149151 -144450779 - L2 LINE L2 -608 2706 2577 415 266 136 39 chrX 18149264 18149572 -144450358 - L1ME3A LINE L1 -1169 4977 4640 26 0 0 0 chrX 18149976 18150002 -144449928 + AT_rich Low_complexity Low_complexity 1 26 0 485 165 204 0 chrX 18150002 18150105 -144449825 - FLAM_A SINE Alu -18 124 1 4108 137 36 19 chrX 18150339 18150800 -144449130 + LTR58 LTR ERV1 1 478 -201 2653 104 25 3 chrX 18150800 18151156 -144448774 + THE1B LTR MaLR 1 364 0 4108 137 36 19 chrX 18151156 18151360 -144448570 + LTR58 LTR ERV1 478 677 -2 416 224 31 57 chrX 18151826 18152008 -144447922 + LTR8 LTR ERV1 1 149 -392 1156 205 100 44 chrX 18152121 18152554 -144447376 + LTR8A LTR ERV1 116 678 -49 537 260 11 55 chrX 18152765 18152946 -144446984 - MER5B DNA MER1_type 0 178 6 902 177 0 0 chrX 18153336 18153466 -144446464 - FLAM_A SINE Alu -2 131 2 22 0 0 0 chrX 18153759 18153781 -144446149 + AT_rich Low_complexity Low_complexity 1 22 0 1075 149 6 0 chrX 18153855 18154036 -144445894 + L1MA6 LINE L1 6004 6185 -115 1287 171 5 5 chrX 18154044 18154261 -144445669 + AluJb SINE Alu 84 300 -12 449 81 102 0 chrX 18154267 18154363 -144445567 + L1MA6 LINE L1 6173 6297 0 2423 40 40 10 chrX 18154414 18154716 -144445214 + AluY SINE Alu 1 311 0 963 225 67 117 chrX 18154887 18155323 -144444607 - MLT1J LTR MaLR -94 417 4 1523 221 82 26 chrX 18156723 18157140 -144442790 + LTR16C LTR ERVL 41 480 -11 181 238 69 59 chrX 18157423 18157524 -144442406 - L2 LINE L2 -2708 606 505 336 281 41 33 chrX 18158554 18158675 -144441255 - L1MDa LINE L1 -6217 323 202 1839 143 6 61 chrX 18158803 18159131 -144440799 - AluJo SINE Alu -2 310 1 2454 74 3 0 chrX 18159142 18159438 -144440492 - AluSc SINE Alu -12 297 1 339 312 0 50 chrX 18159442 18159480 -144440450 - L1MDa LINE L1 -6373 167 129 2237 170 135 18 chrX 18159480 18159932 -144439998 + MLT1D LTR MaLR 1 505 0 339 312 0 50 chrX 18159932 18160034 -144439896 - L1MDa LINE L1 -6411 129 34 406 202 175 0 chrX 18160094 18160208 -144439722 - L1MC4a LINE L1 -939 6869 6736 205 254 16 16 chrX 18160497 18160560 -144439370 + L2 LINE L2 3202 3264 -8 1047 170 179 5 chrX 18160578 18160790 -144439140 + AluJo SINE Alu 1 249 -63 1263 165 64 76 chrX 18161241 18161324 -144438606 - MER33 DNA MER1_type -2261 324 241 824 185 23 0 chrX 18161324 18161454 -144438476 + FLAM_A SINE Alu 1 133 0 1263 165 64 76 chrX 18161454 18161655 -144438275 - MER33 DNA MER1_type -2344 241 42 1960 112 135 0 chrX 18161655 18161959 -144437971 - L1PA16 LINE L1 -9 6157 5813 1263 165 64 76 chrX 18161959 18162001 -144437929 - MER33 DNA MER1_type -2543 42 1 255 222 0 0 chrX 18162044 18162089 -144437841 + polypyrimidine Low_complexity Low_complexity 2 46 0 618 194 36 0 chrX 18162095 18162149 -144437781 + CT-rich Low_complexity Low_complexity 4 55 -119 2610 41 0 25 chrX 18162149 18162467 -144437463 - AluY SINE Alu -1 310 1 618 194 36 0 chrX 18162467 18162577 -144437353 + CT-rich Low_complexity Low_complexity 55 174 0 189 0 0 0 chrX 18162636 18162657 -144437273 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1926 160 3 0 chrX 18163622 18163916 -144436014 + 7SLRNA srpRNA srpRNA 5 299 -21 239 163 0 61 chrX 18164505 18164554 -144435376 + L2 LINE L2 3266 3311 -2 347 274 144 0 chrX 18164759 18164912 -144435018 + MIR SINE MIR 85 259 -3 666 118 8 16 chrX 18165056 18165183 -144434747 + (TA)n Simple_repeat Simple_repeat 2 127 0 2494 275 67 64 chrX 18165902 18167478 -144432452 + L1MEd LINE L1 32 1730 -760 1909 149 0 17 chrX 18167657 18167959 -144431971 + AluJo SINE Alu 3 299 -13 2483 76 3 0 chrX 18167993 18168294 -144431636 - AluSp SINE Alu -11 302 1 2306 58 41 7 chrX 18168459 18168753 -144431177 + AluYa5 SINE Alu 1 304 -7 654 241 89 29 chrX 18170745 18171061 -144428869 + L1MC5 LINE L1 7324 7658 -303 2411 77 3 6 chrX 18171232 18171543 -144428387 - L1PB1 LINE L1 0 6151 5842 811 289 50 4 chrX 18172405 18172644 -144427286 - MIR SINE MIR -11 251 2 204 393 45 24 chrX 18172892 18173223 -144426707 + L2 LINE L2 858 1195 -2119 272 335 72 29 chrX 18173580 18173858 -144426072 + L1MEd LINE L1 274 563 -5556 507 264 27 0 chrX 18173868 18174016 -144425914 + L1M4 LINE L1 4134 4285 -1861 507 311 6 6 chrX 18174491 18174658 -144425272 + L2 LINE L2 1777 1943 -1371 498 155 0 0 chrX 18174927 18174998 -144424932 + AluJ/FLAM SINE Alu 3 73 -239 417 125 0 0 chrX 18175013 18175069 -144424861 - FLAM_A SINE Alu -44 98 43 1869 162 3 25 chrX 18175191 18175505 -144424425 + AluJo SINE Alu 1 307 -5 225 65 0 0 chrX 18175512 18175543 -144424387 + (CA)n Simple_repeat Simple_repeat 2 32 0 1619 154 58 58 chrX 18175645 18176022 -144423908 - LTR8A LTR ERV1 0 727 351 1078 82 7 7 chrX 18176039 18176185 -144423745 + THE1C LTR MaLR 230 375 0 10220 120 61 9 chrX 18176185 18177687 -144422243 + THE1C-int LTR MaLR 1 1580 0 2208 111 44 75 chrX 18177687 18178074 -144421856 + THE1C LTR MaLR 1 375 0 2260 105 6 12 chrX 18178084 18178408 -144421522 - LTR8A LTR ERV1 -405 322 1 784 149 0 78 chrX 18179835 18179976 -144419954 - FLAM_C SINE Alu -3 130 1 1761 136 40 4 chrX 18180340 18180613 -144419317 - L1PA16 LINE L1 -2 6164 5882 24224 131 10 31 chrX 18180613 18181904 -144418026 - L1 LINE L1 -3228 4337 3020 2229 81 3 20 chrX 18181904 18182202 -144417728 - AluSc SINE Alu -16 293 1 24224 131 10 31 chrX 18182202 18182921 -144417009 - L1 LINE L1 -4545 3020 2287 2511 74 0 13 chrX 18182921 18183233 -144416697 + AluY SINE Alu 1 308 -3 24224 131 10 31 chrX 18183233 18184882 -144415048 - L1 LINE L1 -5278 2287 785 2645 138 52 2 chrX 18184882 18185289 -144414641 + MSTA LTR MaLR 2 428 0 24224 131 10 31 chrX 18185289 18186050 -144413880 - L1 LINE L1 -6780 785 9 1109 247 50 18 chrX 18186062 18186341 -144413589 - MLT1F1 LTR MaLR -277 290 3 228 86 0 29 chrX 18186394 18186429 -144413501 - MLT1F1 LTR MaLR -529 38 5 5362 111 4 13 chrX 18186795 18187313 -144412617 - L1PA14 LINE L1 0 6161 5651 2912 92 77 12 chrX 18187313 18187715 -144412215 + MSTA LTR MaLR 1 428 0 5362 111 4 13 chrX 18187715 18187961 -144411969 - L1PA14 LINE L1 -510 5651 5404 4698 111 23 50 chrX 18238940 18238996 -144360934 - MER4D LTR ERV1 0 830 774 2174 101 7 3 chrX 18238996 18239292 -144360638 + AluSx SINE Alu 1 297 -15 4698 111 23 50 chrX 18239292 18240146 -144359784 - MER4D LTR ERV1 -56 774 1 1235 165 33 0 chrX 18240576 18240788 -144359142 - MER20 DNA MER1_type 0 219 1 214 294 0 15 chrX 18241242 18241310 -144358620 - L2 LINE L2 -3 3310 3244 834 207 188 68 chrX 18241316 18241789 -144358141 + MLT1H LTR MaLR 12 541 -8 825 268 84 0 chrX 18241943 18242156 -144357774 + MIR SINE MIR 11 241 -21 4826 119 31 21 chrX 18242673 18243491 -144356439 - L1MA7 LINE L1 -2 6289 5464 264 321 16 16 chrX 18243550 18243677 -144356253 - MIR SINE MIR -67 141 32 1787 216 66 14 chrX 18243679 18244260 -144355670 - L1ME3A LINE L1 -271 5899 5282 381 319 35 58 chrX 18244354 18244392 -144355538 - L2 LINE L2 -475 2839 2802 1145 191 51 38 chrX 18244392 18244707 -144355223 + MER33 DNA MER1_type 2 320 -4 381 319 35 58 chrX 18244707 18244928 -144355002 - L2 LINE L2 -512 2802 2586 510 229 53 29 chrX 18245185 18245355 -144354575 - L2 LINE L2 -504 2810 2637 585 266 39 19 chrX 18245364 18245620 -144354310 - L1ME LINE L1 -349 5772 5512 3065 52 0 25 chrX 18246013 18246416 -144353514 + L1PA8 LINE L1 5780 6172 0 1012 269 36 36 chrX 18247081 18247299 -144352631 + L2 LINE L2 469 686 -2628 3232 168 42 25 chrX 18247299 18247562 -144352368 + MER82 DNA MER2_type 1 258 -395 204 67 0 0 chrX 18247562 18247592 -144352338 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3232 168 42 25 chrX 18247592 18247666 -144352264 + MER82 DNA MER2_type 258 329 -324 1921 140 0 36 chrX 18247666 18247973 -144351957 - AluJb SINE Alu -16 296 1 3232 168 42 25 chrX 18247973 18248276 -144351654 + MER82 DNA MER2_type 329 653 0 1012 269 36 36 chrX 18248276 18248392 -144351538 + L2 LINE L2 685 803 -2511 400 223 182 8 chrX 18248521 18248642 -144351288 + MLT1B LTR MaLR 30 171 -219 861 206 5 39 chrX 18248718 18248922 -144351008 + MLT1B LTR MaLR 194 390 0 314 215 141 15 chrX 18249131 18249266 -144350664 - L1ME4a LINE L1 -6 6115 5964 264 326 136 19 chrX 18249284 18249658 -144350272 - LTR67 LTR ERVL -7 550 133 701 325 21 0 chrX 18249929 18250215 -144349715 - ERVL LTR ERVL -420 5344 5053 724 224 145 0 chrX 18250363 18250542 -144349388 - MIR SINE MIR -38 224 20 328 275 141 0 chrX 18250591 18250733 -144349197 - ERVL LTR ERVL -3028 2736 2575 435 248 67 9 chrX 18250734 18250839 -144349091 + L2 LINE L2 3203 3313 0 1127 312 87 31 chrX 18250841 18251449 -144348481 - ERVL LTR ERVL -3038 1958 1870 259 243 135 18 chrX 18252293 18252404 -144347526 - LTR67 LTR ERVL -5 552 429 241 179 18 18 chrX 18252775 18252831 -144347099 - LTR65 LTR ERV1 -272 397 342 1955 214 21 43 chrX 18253081 18253596 -144346334 - MLT1D LTR MaLR 0 505 2 2163 139 67 31 chrX 18254895 18255312 -144344618 - MSTB1 LTR MaLR 0 432 1 927 238 98 47 chrX 18256399 18256871 -144343059 + MLT1H LTR MaLR 12 549 0 2124 103 0 4 chrX 18256907 18257180 -144342750 + AluSg SINE Alu 24 295 -15 2670 71 23 25 chrX 18257261 18257655 -144342275 + L1PB1 LINE L1 5758 6150 -1 1978 144 0 3 chrX 18259381 18259666 -144340264 + AluJb SINE Alu 1 284 -28 520 296 61 15 chrX 18259822 18260018 -144339912 + MIR SINE MIR 58 262 0 284 298 174 12 chrX 18260815 18260976 -144338954 - MIR SINE MIR -56 206 20 208 332 82 74 chrX 18261632 18261984 -144337946 + L2 LINE L2 2623 2977 -337 301 140 0 0 chrX 18262013 18262063 -144337867 - MER103 DNA DNA -115 51 2 336 254 27 36 chrX 18262092 18262202 -144337728 + LTR33 LTR ERVL 1 109 -412 1653 132 61 103 chrX 18262214 18262623 -144337307 + MLT2C1 LTR ERVL 6 397 0 440 296 25 6 chrX 18262737 18262899 -144337031 + LTR33 LTR ERVL 255 419 -102 541 57 0 0 chrX 18262903 18262973 -144336957 + MER11B LTR ERVK 1 70 -1166 7008 93 7 24 chrX 18263012 18264088 -144335842 - MER11C LTR ERVK -14 1057 1 302 221 63 11 chrX 18264092 18264187 -144335743 + LTR33 LTR ERVL 422 521 0 182 314 73 32 chrX 18264277 18264401 -144335529 - L2 LINE L2 -200 3072 2944 279 274 69 39 chrX 18264417 18264519 -144335411 - MIR SINE MIR -39 223 119 271 236 79 0 chrX 18264719 18264808 -144335122 - L1ME4a LINE L1 -9 6112 6017 2878 103 29 7 chrX 18264808 18265227 -144334703 + MSTA LTR MaLR 1 428 0 1045 185 5 54 chrX 18265322 18265488 -144334442 - MER20 DNA MER1_type -4 215 61 2330 100 0 3 chrX 18265488 18265797 -144334133 - AluSq SINE Alu -5 308 1 1045 185 5 54 chrX 18265797 18265852 -144334078 - MER20 DNA MER1_type -158 61 5 401 250 113 82 chrX 18265852 18266087 -144333843 - L1ME4a LINE L1 -240 5881 5634 2423 83 0 13 chrX 18266087 18266400 -144333530 - AluSg1 SINE Alu 0 309 1 401 250 113 82 chrX 18266400 18266456 -144333474 - L1ME4a LINE L1 -487 5634 5581 2248 115 0 3 chrX 18266829 18267134 -144332796 + AluSx SINE Alu 1 304 -8 513 293 7 7 chrX 18267321 18267468 -144332462 + MIR3 SINE MIR 45 191 -17 712 241 6 29 chrX 18267789 18267963 -144331967 + L2 LINE L2 3144 3313 0 1873 117 103 3 chrX 18268136 18268418 -144331512 - AluSx SINE Alu -2 310 1 752 236 122 46 chrX 18269333 18269681 -144330249 + MLT1J1 LTR MaLR 1 444 -6 1744 218 89 7 chrX 18271581 18272154 -144327776 - MER114 LTR ERV 0 648 29 17953 109 19 15 chrX 18272337 18275045 -144324885 - Tigger2 DNA MER2_type 0 2718 1 2093 99 42 3 chrX 18275075 18275358 -144324572 - AluSx SINE Alu -18 294 1 225 0 0 0 chrX 18275423 18275448 -144324482 + (TA)n Simple_repeat Simple_repeat 1 25 0 55 66 0 8 chrX 18275450 18275478 -144324452 + AT_rich Low_complexity Low_complexity 1 28 -93 3024 94 19 0 chrX 18275478 18275904 -144324026 - L1PA16 LINE L1 -9 6157 5724 55 66 0 8 chrX 18275904 18275997 -144323933 + AT_rich Low_complexity Low_complexity 28 121 0 234 218 18 0 chrX 18276003 18276058 -144323872 - MER94 DNA DNA -78 56 1 237 33 0 0 chrX 18276084 18276114 -144323816 + (T)n Simple_repeat Simple_repeat 1 30 0 1151 207 13 20 chrX 18276114 18276502 -144323428 - L1HS LINE L1 0 6155 5766 1448 147 12 0 chrX 18276616 18276867 -144323063 - Tigger1 DNA MER2_type -2162 256 3 344 40 20 0 chrX 18278576 18278626 -144321304 + (TG)n Simple_repeat Simple_repeat 2 52 0 1743 205 92 36 chrX 18280682 18281160 -144318770 + MLT1D LTR MaLR 1 505 0 214 354 122 36 chrX 18282406 18283332 -144316598 - L2 LINE L2 -1340 1974 969 310 328 23 8 chrX 18283348 18283479 -144316451 - MIR SINE MIR -70 192 60 479 245 10 0 chrX 18283878 18283976 -144315954 - MIR SINE MIR -124 138 40 654 286 127 67 chrX 18283982 18284879 -144315051 - L1M4 LINE L1 -2461 3685 2735 331 360 0 0 chrX 18285324 18285477 -144314453 + MERVL LTR ERVL 5181 5333 -152 2572 183 60 56 chrX 18285531 18286153 -144313777 + MLT1E3 LTR MaLR 1 624 0 599 231 192 26 chrX 18286461 18286597 -144313333 + LTR50 LTR ERVL 17 129 -666 4076 140 9 2 chrX 18286597 18287227 -144312703 - MER41B LTR ERV1 0 635 1 599 231 192 26 chrX 18287227 18287324 -144312606 + LTR50 LTR ERVL 129 289 -506 378 207 70 0 chrX 18287473 18287609 -144312321 + LTR33A LTR ERVL 404 520 -3 215 323 15 0 chrX 18288358 18288423 -144311507 - L2 LINE L2 -1388 1926 1861 502 229 73 82 chrX 18288427 18288879 -144311051 + PABL_B LTR ERV1 1 592 -75 391 161 9 125 chrX 18288881 18288993 -144310937 + PABL_B LTR ERV1 494 592 -75 818 168 11 70 chrX 18288995 18289180 -144310750 + PABL_B LTR ERV1 494 667 0 321 310 14 0 chrX 18289307 18289449 -144310481 + HAL1 LINE L1 1692 1835 -672 2698 136 50 48 chrX 18289458 18290015 -144309915 + LTR49 LTR ERV1 1 558 -37 743 238 93 26 chrX 18290044 18290388 -144309542 + HAL1 LINE L1 1994 2360 -147 986 146 7 0 chrX 18290388 18290532 -144309398 + AluJb SINE Alu 1 145 -167 2494 184 83 30 chrX 18290537 18291166 -144308764 - LTR8A LTR ERV1 0 727 66 987 111 0 33 chrX 18291291 18291444 -144308486 + AluJb SINE Alu 147 294 -18 348 174 101 114 chrX 18291449 18291598 -144308332 + HAL1 LINE L1 2353 2499 -8 281 262 43 35 chrX 18291618 18291759 -144308171 + L1ME4a LINE L1 5974 6115 -6 387 101 87 0 chrX 18291875 18291944 -144307986 + LTR39 LTR ERV1 1 75 -708 3094 160 19 72 chrX 18291970 18292690 -144307240 - LTR8 LTR ERV1 -9 682 1 1868 99 18 0 chrX 18292690 18292962 -144306968 + LTR39 LTR ERV1 72 348 -435 361 88 15 15 chrX 18292963 18293031 -144306899 - L1PA2 LINE L1 0 6155 6088 31483 42 2 2 chrX 18293142 18297206 -144302724 - L1P LINE L1 -2083 4063 2 775 254 75 42 chrX 18297201 18297587 -144302343 - L1M4 LINE L1 -1727 4419 4021 * 193 393 8 17 chrX 18297587 18297704 -144302226 + L2 LINE L2 2969 3084 -188 1324 177 130 107 chrX 18297822 18298424 -144301506 + LTR8 LTR ERV1 1 719 -8 333 351 14 47 chrX 18298640 18298851 -144301079 + MLT1I LTR MaLR 34 237 -172 3928 108 31 0 chrX 18298883 18299460 -144300470 - LTR49 LTR ERV1 0 595 1 258 270 0 14 chrX 18299545 18299619 -144300311 + MLT1I LTR MaLR 331 403 -6 2518 179 55 109 chrX 18299775 18300136 -144299794 - LTR8A LTR ERV1 0 727 429 2362 109 0 0 chrX 18300136 18300438 -144299492 - AluSc SINE Alu -7 302 1 2518 179 55 109 chrX 18300438 18300845 -144299085 - LTR8A LTR ERV1 -298 429 1 250 284 30 41 chrX 18300886 18301055 -144298875 + MLT1J LTR MaLR 1 167 -344 2596 133 42 3 chrX 18301223 18301770 -144298160 + LTR29 LTR ERV1 1 622 0 245 264 33 99 chrX 18301778 18301990 -144297940 + MLT1J LTR MaLR 314 511 0 979 168 26 11 chrX 18302006 18302196 -144297734 - MER20 DNA MER1_type 0 219 27 259 308 11 0 chrX 18302202 18302293 -144297637 + L2 LINE L2 2183 2274 -1040 261 0 0 0 chrX 18302663 18302692 -144297238 + (TG)n Simple_repeat Simple_repeat 1 29 0 239 114 23 0 chrX 18302700 18302744 -144297186 + GA-rich Low_complexity Low_complexity 2 46 0 2374 156 23 0 chrX 18303202 18303592 -144296338 - LTR39 LTR ERV1 0 783 385 693 145 22 0 chrX 18304104 18304242 -144295688 - MER53 DNA DNA 0 189 49 542 120 33 0 chrX 18304244 18304336 -144295594 - MER53 DNA DNA -94 95 1 612 93 0 0 chrX 18305575 18305672 -144294258 - L1 LINE L1 -1827 4319 4223 385 250 189 20 chrX 18305742 18305890 -144294040 + MIR SINE MIR 88 260 -2 1813 186 51 14 chrX 18305914 18306264 -144293666 - MLT1A1 LTR MaLR 0 365 3 2314 74 44 0 chrX 18307372 18307668 -144292262 + AluSx SINE Alu 1 309 -3 7032 63 0 44 chrX 18310055 18311112 -144288818 - L1PA10 LINE L1 -2 6166 5121 408 125 0 16 chrX 18311469 18311533 -144288397 + Tigger1 DNA MER2_type 267 329 -2089 12153 96 10 14 chrX 18311575 18313417 -144286513 + Tigger1 DNA MER2_type 584 2418 0 216 196 39 20 chrX 18313947 18313998 -144285932 + MER5A DNA MER1_type 2 53 -136 * 227 193 273 57 chrX 18313974 18314062 -144285868 - MER5A DNA MER1_type -18 171 65 1164 159 144 68 chrX 18314113 18314452 -144285478 - MLT1A1 LTR MaLR 0 365 1 274 180 20 0 chrX 18314652 18314702 -144285228 - L2 LINE L2 0 3313 3263 1767 196 76 23 chrX 18315084 18315518 -144284412 - MSTB2 LTR MaLR 0 457 1 1639 87 0 0 chrX 18315632 18315861 -144284069 + L1MA2 LINE L1 6076 6304 0 25 0 0 0 chrX 18316408 18316433 -144283497 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chrX 18316513 18316534 -144283396 + AT_rich Low_complexity Low_complexity 1 21 0 1783 303 122 34 chrX 18316983 18318083 -144281847 + L2 LINE L2 2001 3208 -105 260 316 42 11 chrX 18318159 18318254 -144281676 + L2 LINE L2 3175 3272 0 1088 45 0 0 chrX 18318651 18318785 -144281145 + AluY SINE Alu 178 311 0 21 36 0 0 chrX 18319190 18319218 -144280712 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 18319245 18319267 -144280663 + AT_rich Low_complexity Low_complexity 1 22 0 773 305 36 4 chrX 18319517 18319766 -144280164 + MIR SINE MIR 3 259 -3 205 360 20 0 chrX 18319787 18319837 -144280093 - L2 LINE L2 -88 3184 3134 2415 117 31 14 chrX 18320260 18320618 -144279312 + THE1B LTR MaLR 1 364 0 245 388 121 0 chrX 18320795 18320911 -144279019 - L2 LINE L2 -15 3257 3128 570 233 107 0 chrX 18320924 18321047 -144278883 + HsTC2a DNA Tc2 9 147 -597 1380 227 63 118 chrX 18321047 18321668 -144278262 - MLT1E LTR MaLR 0 593 7 1953 209 89 13 chrX 18321701 18322243 -144277687 + HsTC2a DNA Tc2 156 738 -4 435 294 14 14 chrX 18323832 18323975 -144275955 - L2 LINE L2 -5 3308 3166 1567 156 10 19 chrX 18324362 18324669 -144275261 + L1PB4 LINE L1 5766 6069 -87 2232 92 14 3 chrX 18325629 18325957 -144273973 + AluSp SINE Alu 1 313 0 1113 190 24 0 chrX 18327692 18327903 -144272027 - MER20 DNA MER1_type 0 219 4 227 260 0 0 chrX 18328479 18328529 -144271401 + GA-rich Low_complexity Low_complexity 4 53 0 258 171 43 14 chrX 18328631 18328701 -144271229 - L1ME4a LINE L1 0 6121 6050 24 0 0 0 chrX 18328980 18329004 -144270926 + AT_rich Low_complexity Low_complexity 1 24 0 640 288 25 88 chrX 18329076 18329476 -144270454 - L2 LINE L2 0 3313 2939 667 297 143 19 chrX 18329507 18329871 -144270059 - L2 LINE L2 -468 2846 2438 24 53 0 0 chrX 18329882 18329920 -144270010 + AT_rich Low_complexity Low_complexity 1 38 0 233 343 140 0 chrX 18330223 18330366 -144269564 - L2 LINE L2 -415 2899 2737 1310 78 0 5 chrX 18330535 18330751 -144269179 + L1M1 LINE L1 5229 5443 -743 1112 156 0 5 chrX 18330774 18330973 -144268957 + L1PBa LINE L1 1 198 -6665 * 10164 138 39 5 chrX 18330969 18332524 -144267406 + L1PBa LINE L1 995 2496 -4366 208 48 48 24 chrX 18332524 18332566 -144267364 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 10164 138 39 5 chrX 18332566 18332877 -144267053 + L1PBa LINE L1 2496 2795 -4067 1698 176 0 45 chrX 18332877 18333189 -144266741 + AluJb SINE Alu 1 298 -14 10164 138 39 5 chrX 18333189 18334829 -144265101 + L1PBa LINE L1 2795 4763 -2099 5796 129 3 1 chrX 18335002 18335952 -144263978 - L1P LINE L1 -1253 4893 3942 1079 183 44 15 chrX 18335984 18336258 -144263672 + Charlie1 DNA MER1_type 2474 2755 -6 1268 195 5 0 chrX 18336375 18336580 -144263350 - AluJo SINE Alu -21 291 86 289 67 0 0 chrX 18336657 18336702 -144263228 - Alu SINE Alu -5 295 251 2298 108 0 0 chrX 18336933 18337229 -144262701 + AluSq SINE Alu 1 296 -17 24 32 0 0 chrX 18337393 18337424 -144262506 + AT_rich Low_complexity Low_complexity 1 31 0 1062 161 0 0 chrX 18337424 18337610 -144262320 - L1PB1 LINE L1 -8 6143 5958 773 4 2 0 chrX 18337952 18338053 -144261877 - L1P1 LINE L1 -400 5755 5653 24 0 0 0 chrX 18338092 18338116 -144261814 + AT_rich Low_complexity Low_complexity 1 24 0 516 242 61 18 chrX 18338162 18338327 -144261603 + MLT1H LTR MaLR 378 549 0 448 239 8 23 chrX 18338785 18338915 -144261015 - MLT1H LTR MaLR -46 503 376 679 283 55 25 chrX 18339209 18339446 -144260484 + MIR SINE MIR 3 246 -16 969 172 0 0 chrX 18340348 18340493 -144259437 - FRAM SINE Alu -22 154 10 339 276 59 40 chrX 18340541 18340693 -144259237 - MLT1J LTR MaLR -331 180 26 1222 186 38 31 chrX 18341479 18341796 -144258134 - MER33 DNA MER1_type -5 319 1 1932 107 3 0 chrX 18341995 18342285 -144257645 + L1MA2 LINE L1 6014 6304 0 559 225 0 31 chrX 18342341 18342470 -144257460 - MIR3 SINE MIR -35 173 49 314 336 64 0 chrX 18342482 18342607 -144257323 - L2 LINE L2 -3 3269 3137 969 258 28 10 chrX 18342854 18343145 -144256785 - LTR16C LTR ERVL 0 491 196 234 0 0 0 chrX 18343489 18343515 -144256415 + (T)n Simple_repeat Simple_repeat 1 26 0 582 187 19 0 chrX 18343867 18343974 -144255956 + MER5A DNA MER1_type 4 112 -77 325 314 246 0 chrX 18344096 18344271 -144255659 + MIR SINE MIR 14 231 -31 899 265 23 15 chrX 18344930 18345194 -144254736 + Tigger8 DNA MER2_type 14 279 -387 246 222 167 0 chrX 18346062 18346134 -144253796 + MIR SINE MIR 69 152 -110 1273 254 88 5 chrX 18346669 18347066 -144252864 + LTR40a LTR ERVL 1 430 -89 353 254 55 0 chrX 18347177 18347287 -144252643 + MIR SINE MIR 144 259 -3 5356 78 19 18 chrX 18347793 18348416 -144251514 + L1MA2 LINE L1 5513 6139 -165 2292 90 7 19 chrX 18348416 18348726 -144251204 + AluSq SINE Alu 1 306 -7 5356 78 19 18 chrX 18348726 18348875 -144251055 + L1MA2 LINE L1 6139 6286 -18 * 6982 62 4 1 chrX 18348873 18350079 -144249851 + L1PA8 LINE L1 4949 6157 -15 1082 211 20 35 chrX 18350220 18350473 -144249457 + MIR SINE MIR 4 260 -2 973 174 0 12 chrX 18350473 18350634 -144249296 - FRAM SINE Alu -17 159 1 261 254 4 0 chrX 18351106 18351185 -144248745 - MLT1J LTR MaLR -324 126 50 2142 219 77 10 chrX 18351452 18351960 -144247970 - MLT1F LTR MaLR 0 542 1 187 385 0 15 chrX 18351960 18352025 -144247905 - MIR SINE MIR -118 90 27 242 191 0 0 chrX 18352184 18352231 -144247699 + (CA)n Simple_repeat Simple_repeat 2 48 0 1073 87 0 47 chrX 18352353 18352525 -144247405 - L1MA1 LINE L1 0 6302 6139 841 209 14 0 chrX 18353318 18353466 -144246464 - FRAM SINE Alu -15 161 12 315 318 0 23 chrX 18353662 18353750 -144246180 - L2 LINE L2 -1 3271 3186 273 233 83 0 chrX 18353748 18353808 -144246122 - MIR SINE MIR -169 93 29 * 236 323 108 12 chrX 18353891 18354058 -144245872 - MIR SINE MIR -7 255 73 305 141 0 78 chrX 18354128 18354192 -144245738 + LTR67 LTR ERVL 499 557 0 289 227 0 34 chrX 18354604 18354692 -144245238 + MER45 DNA AcHobo 1 85 -93 745 197 126 102 chrX 18355659 18356081 -144243849 - L1MD2 LINE L1 -16 6343 5912 4454 160 26 7 chrX 18356153 18357451 -144242479 - L1MB7 LINE L1 -19 6165 4835 251 243 230 20 chrX 18357793 18357945 -144241985 - MIR3 SINE MIR -19 189 6 204 332 95 60 chrX 18358034 18358266 -144241664 + L2 LINE L2 2552 2791 -523 1339 273 52 54 chrX 18358403 18358563 -144241367 - LTR16C LTR ERVL -2 489 330 1553 165 16 3 chrX 18358563 18358878 -144241052 + L1MA4 LINE L1 5977 6295 -5 1339 273 52 54 chrX 18358878 18359197 -144240733 - LTR16C LTR ERVL -161 330 11 21 0 0 0 chrX 18359461 18359482 -144240448 + AT_rich Low_complexity Low_complexity 1 21 0 2098 116 3 30 chrX 18359482 18359785 -144240145 + AluSq SINE Alu 1 295 -18 2441 75 21 3 chrX 18359785 18360117 -144239813 - L1PA10 LINE L1 -6 6162 5825 217 356 88 38 chrX 18360200 18360439 -144239491 - L2 LINE L2 -340 2974 2724 2338 95 3 20 chrX 18362274 18362631 -144237299 + L1PA16 LINE L1 5816 6166 0 23 0 0 0 chrX 18363444 18363467 -144236463 + AT_rich Low_complexity Low_complexity 1 23 0 256 295 57 4 chrX 18363639 18363866 -144236064 - L1 LINE L1 -1732 4414 4176 21 0 0 0 chrX 18363893 18363914 -144236016 + AT_rich Low_complexity Low_complexity 1 21 0 4556 158 40 7 chrX 18364009 18364359 -144235571 - L1MB2 LINE L1 -7 6164 5827 192 77 0 0 chrX 18364359 18364385 -144235545 + (TATG)n Simple_repeat Simple_repeat 3 28 0 4556 158 40 7 chrX 18364385 18364660 -144235270 - L1MB2 LINE L1 -344 5827 5563 2451 90 3 0 chrX 18364660 18364971 -144234959 - AluSp SINE Alu -1 312 1 4556 158 40 7 chrX 18364971 18365706 -144234224 - L1MB2 LINE L1 -608 5563 4758 2948 200 35 6 chrX 18366183 18366864 -144233066 - L1MB2 LINE L1 -1383 4763 4063 1965 151 3 0 chrX 18366987 18367279 -144232651 - AluSx SINE Alu -19 293 1 862 131 80 11 chrX 18367488 18367663 -144232267 + L1MA4 LINE L1 6113 6299 -1 258 305 8 83 chrX 18368088 18368208 -144231722 - MIR SINE MIR -66 142 37 920 183 37 0 chrX 18368212 18368403 -144231527 - L1MD3 LINE L1 -6 7989 7792 255 121 47 54 chrX 18368575 18368724 -144231206 + (TA)n Simple_repeat Simple_repeat 2 149 0 367 166 59 49 chrX 18368736 18369199 -144230731 + (CATATA)n Simple_repeat Simple_repeat 1 467 0 363 158 51 57 chrX 18369244 18369421 -144230509 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 331 112 53 47 chrX 18369467 18369637 -144230293 + (TA)n Simple_repeat Simple_repeat 1 171 0 486 273 117 7 chrX 18370937 18371091 -144228839 + LTR16C LTR ERVL 112 282 -209 591 211 28 0 chrX 18371092 18371201 -144228729 + MER5A DNA MER1_type 1 112 -77 786 211 35 92 chrX 18371215 18371375 -144228555 + LTR16C LTR ERVL 247 388 -103 2109 174 75 33 chrX 18371375 18371857 -144228073 + MLT1D LTR MaLR 4 505 0 786 211 35 92 chrX 18371857 18371956 -144227974 + LTR16C LTR ERVL 388 491 0 265 369 7 13 chrX 18372745 18372894 -144227036 - LTR67 LTR ERVL -311 246 99 2513 130 24 65 chrX 18373116 18373623 -144226307 + LTR19A LTR ERV1 1 486 0 1215 121 39 0 chrX 18375041 18375223 -144224707 + MER5A DNA MER1_type 1 189 0 520 170 0 0 chrX 18375435 18375529 -144224401 + AluSg/x SINE Alu 215 308 -1 1916 191 23 41 chrX 18376671 18377112 -144222818 + MLT1C LTR MaLR 2 434 -33 393 22 0 0 chrX 18377646 18377692 -144222238 + (TG)n Simple_repeat Simple_repeat 1 46 0 501 252 15 0 chrX 18378791 18378926 -144221004 + L1MC/D LINE L1 5574 5710 -2098 324 127 143 0 chrX 18378957 18379020 -144220910 + MER58 DNA MER1_type 181 252 -89 312 382 72 7 chrX 18379284 18379436 -144220494 - L2 LINE L2 -4 3268 3107 825 270 154 19 chrX 18380149 18380578 -144219352 + LTR33 LTR ERVL 5 491 -30 36493 36 2 1 chrX 18380641 18386784 -144213146 - L1PA3 LINE L1 -2 6153 1 2162 106 7 0 chrX 18386808 18387101 -144212829 + AluSx SINE Alu 5 299 -13 359 291 15 82 chrX 18387274 18387470 -144212460 - L3 LINE CR1 -272 1305 1123 398 280 16 48 chrX 18387749 18387874 -144212056 - L3 LINE CR1 -614 963 843 284 306 31 62 chrX 18387898 18388058 -144211872 - L3 LINE CR1 -635 942 788 5063 122 11 6 chrX 18388125 18389438 -144210492 + L1MA2 LINE L1 4717 6034 -270 1966 166 23 6 chrX 18389442 18389873 -144210057 + L1MA2 LINE L1 5215 5652 -652 2077 106 41 12 chrX 18390008 18390348 -144209582 + L1MA2 LINE L1 5955 6304 0 577 283 85 46 chrX 18390382 18390792 -144209138 - MLT1J LTR MaLR -84 427 2 217 318 63 0 chrX 18390837 18390900 -144209030 - L2 LINE L2 0 3272 3206 1766 91 0 0 chrX 18390951 18391171 -144208759 + AluSg/x SINE Alu 83 302 -10 815 352 118 12 chrX 18391171 18391764 -144208166 - L3 LINE CR1 -802 775 120 393 22 0 0 chrX 18392414 18392460 -144207470 + (TG)n Simple_repeat Simple_repeat 2 47 0 1038 169 0 0 chrX 18393441 18393619 -144206311 - MER58A DNA MER1_type 0 224 47 1107 214 0 5 chrX 18394417 18394637 -144205293 + MER58A DNA MER1_type 1 219 -5 1051 302 144 53 chrX 18394661 18395408 -144204522 + L2 LINE L2 2198 3007 -265 1615 140 18 43 chrX 18395793 18396122 -144203808 - MER33 DNA MER1_type 0 324 4 429 263 92 59 chrX 18396143 18396488 -144203442 - L1ME3 LINE L1 -211 5951 5595 928 274 98 17 chrX 18396640 18397224 -144202706 - L1MC3 LINE L1 -344 5818 5292 1784 122 7 73 chrX 18397235 18397561 -144202369 + AluSx SINE Alu 1 306 0 819 317 50 21 chrX 18397579 18398204 -144201726 - L1MC3 LINE L1 -873 5273 4631 843 318 50 16 chrX 18398204 18398411 -144201519 - L2 LINE L2 -23 3290 3092 210 37 0 0 chrX 18398411 18398438 -144201492 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 843 318 50 16 chrX 18398438 18398700 -144201230 - L2 LINE L2 -221 3092 2709 210 339 32 0 chrX 18399294 18399356 -144200574 - L3 LINE CR1 -19 1558 1495 315 85 0 0 chrX 18399411 18399458 -144200472 + (TG)n Simple_repeat Simple_repeat 1 47 0 482 235 76 8 chrX 18399513 18399632 -144200298 + L2 LINE L2 3142 3268 -4 1589 185 40 40 chrX 18399683 18399887 -144200043 - MLT1A2 LTR MaLR -1 373 167 279 0 0 0 chrX 18399887 18399918 -144200012 + (TG)n Simple_repeat Simple_repeat 1 31 0 1589 185 40 40 chrX 18399918 18400086 -144199844 - MLT1A2 LTR MaLR -206 168 1 2343 78 7 3 chrX 18400160 18400456 -144199474 + AluSc SINE Alu 1 297 -12 6083 154 62 40 chrX 18400465 18401740 -144198190 + L1MCa LINE L1 23 1325 -5101 11810 207 78 42 chrX 18401752 18404598 -144195332 + L1PA16 LINE L1 1735 4476 -2393 5027 59 2 0 chrX 18404598 18405226 -144194704 - L1PA6 LINE L1 0 6154 5526 11810 207 78 42 chrX 18405226 18406009 -144193921 + L1PA16 LINE L1 4476 5229 -1640 2304 110 0 0 chrX 18406009 18406308 -144193622 - AluSp SINE Alu -14 299 1 11810 207 78 42 chrX 18406308 18406363 -144193567 + L1PA16 LINE L1 5229 5281 -1588 3522 112 0 15 chrX 18406363 18406882 -144193048 - MER9 LTR ERVK 0 511 1 11810 207 78 42 chrX 18406882 18407453 -144192477 + L1PA16 LINE L1 5281 6173 -696 387 59 0 0 chrX 18407453 18407504 -144192426 - MADE1 DNA Mariner 0 80 30 4579 122 7 3 chrX 18407523 18408218 -144191712 + L1PA16 LINE L1 6172 6869 0 1884 243 4 2 chrX 18408220 18408723 -144191207 + L1MCa LINE L1 2522 3025 -3401 317 348 52 0 chrX 18408742 18408877 -144191053 - MIR SINE MIR -10 252 111 227 261 0 0 chrX 18408891 18408937 -144190993 + MIR SINE MIR 217 262 0 213 39 0 0 chrX 18409093 18409119 -144190811 + (TG)n Simple_repeat Simple_repeat 1 26 0 6700 14 0 2 chrX 18409470 18410273 -144189657 - L1PA2 LINE L1 0 6155 5355 6365 21 0 1 chrX 18410278 18411056 -144188874 + L1P LINE L1 3959 4735 -1411 253 320 148 10 chrX 18411326 18411529 -144188401 - L3 LINE CR1 -269 1308 1078 203 190 17 0 chrX 18411841 18411899 -144188031 + CT-rich Low_complexity Low_complexity 2 60 0 1049 214 146 10 chrX 18412086 18412380 -144187550 + LTR16C LTR ERVL 158 491 0 21 71 0 0 chrX 18412506 18412548 -144187382 + AT_rich Low_complexity Low_complexity 1 42 0 2409 116 78 20 chrX 18413113 18413510 -144186420 + MSTB LTR MaLR 3 422 -4 2182 122 0 32 chrX 18413584 18413896 -144186034 + AluSx SINE Alu 1 302 -10 2042 124 0 0 chrX 18415188 18415463 -144184467 + AluSx SINE Alu 1 275 -37 207 0 0 0 chrX 18415468 18415491 -144184439 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1709 249 12 10 chrX 18415783 18416184 -144183746 - LTR40a LTR ERVL -117 402 1 1231 265 34 48 chrX 18416349 18416787 -144183143 - LTR16A LTR ERVL -6 444 13 358 266 17 23 chrX 18418363 18418381 -144181549 - L1MA10 LINE L1 -1 6333 6316 1326 203 27 3 chrX 18418381 18418676 -144181254 - L1ME2 LINE L1 -10 6154 5853 339 319 43 9 chrX 18419293 18419409 -144180521 + MIR3 SINE MIR 65 184 -24 7745 20 4 0 chrX 18419994 18421213 -144178717 - L1PA3 LINE L1 -2 6153 4933 252 242 0 0 chrX 18421473 18421535 -144178395 + L1MC/D LINE L1 5834 5895 -1913 188 288 76 30 chrX 18421666 18421732 -144178198 - L2 LINE L2 -344 2970 2902 432 0 0 0 chrX 18422113 18422161 -144177769 + (CA)n Simple_repeat Simple_repeat 2 49 0 653 292 308 8 chrX 18422697 18423084 -144176846 - L2 LINE L2 -1 3312 2810 250 242 0 0 chrX 18423105 18423167 -144176763 + L1MC/D LINE L1 5834 5895 -1913 321 295 67 76 chrX 18423379 18423694 -144176236 + MLT1J LTR MaLR 108 419 -92 2901 9 0 0 chrX 18423916 18424234 -144175696 - AluYb8 SINE Alu 0 318 1 402 314 158 43 chrX 18424284 18424587 -144175343 + L2 LINE L2 2925 3262 -10 1826 217 173 8 chrX 18424863 18425394 -144174536 + MLT2F LTR ERVL 1 619 -44 249 33 0 0 chrX 18425409 18425439 -144174491 + (GA)n Simple_repeat Simple_repeat 1 30 0 249 224 47 0 chrX 18425440 18425525 -144174405 + (TA)n Simple_repeat Simple_repeat 2 90 0 3969 176 52 32 chrX 18426279 18426355 -144173575 + L1P5 LINE L1 4325 4398 -1753 207 0 0 0 chrX 18426355 18426378 -144173552 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3969 176 52 32 chrX 18426378 18427545 -144172385 + L1P5 LINE L1 4398 5569 -582 1934 132 9 11 chrX 18627547 18627895 -143972035 + L1MA2 LINE L1 5958 6304 0 336 180 171 72 chrX 18627933 18628044 -143971886 + FLAM_C SINE Alu 2 123 -10 240 222 16 16 chrX 18628051 18628114 -143971816 - MIR SINE MIR 0 262 200 914 156 49 126 chrX 18628193 18628402 -143971528 - MSTB1 LTR MaLR -187 245 58 2467 77 7 0 chrX 18628402 18628712 -143971218 - AluSp SINE Alu -1 312 1 914 156 49 126 chrX 18628712 18628765 -143971165 - MSTB1 LTR MaLR -374 58 3 1012 263 51 0 chrX 18628784 18629039 -143970891 + MER119 DNA MER1_type 5 272 -311 244 292 94 0 chrX 18629815 18629911 -143970019 - MIR3 SINE MIR -3 205 101 471 185 0 0 chrX 18630773 18630865 -143969065 + GA-rich Low_complexity Low_complexity 3 94 0 24 53 0 0 chrX 18631372 18631410 -143968520 + AT_rich Low_complexity Low_complexity 1 38 0 216 111 0 0 chrX 18632318 18632354 -143967576 + (TG)n Simple_repeat Simple_repeat 2 37 0 381 312 131 79 chrX 18632785 18633331 -143966599 + L2 LINE L2 2651 3231 -41 478 270 145 52 chrX 18633331 18633675 -143966255 - MLT1J2 LTR MaLR -4 446 71 469 222 142 40 chrX 18634819 18635044 -143964886 - MER112 DNA MER1_type 0 260 13 2259 98 3 16 chrX 18635491 18635798 -143964132 + AluSg SINE Alu 1 303 -7 317 322 47 23 chrX 18635876 18636047 -143963883 + L1M4 LINE L1 2111 2285 -3861 2272 72 7 0 chrX 18636047 18636338 -143963592 + AluY SINE Alu 1 293 -18 1831 175 70 34 chrX 18636764 18637210 -143962720 - MLT1C LTR MaLR 0 467 6 21 0 0 0 chrX 18637347 18637368 -143962562 + AT_rich Low_complexity Low_complexity 1 21 0 2389 100 49 9 chrX 18637462 18637812 -143962118 - THE1B LTR MaLR 0 364 1 21 36 0 0 chrX 18637884 18637912 -143962018 + AT_rich Low_complexity Low_complexity 1 28 0 2613 43 0 0 chrX 18638338 18638641 -143961289 - AluY SINE Alu -8 303 1 912 152 0 0 chrX 18638778 18638910 -143961020 + FLAM_C SINE Alu 1 132 -11 201 196 0 0 chrX 18639131 18639177 -143960753 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 246 359 33 0 chrX 18639350 18639442 -143960488 + LTR33A LTR ERVL 68 162 -361 260 109 0 22 chrX 18639462 18639508 -143960422 + (CAG)n Simple_repeat Simple_repeat 3 47 0 256 184 92 23 chrX 18639774 18639861 -143960069 + LTR33A LTR ERVL 431 523 0 197 420 65 0 chrX 18640089 18640227 -143959703 + MIR3 SINE MIR 30 176 -32 316 281 46 46 chrX 18640257 18640387 -143959543 + MIR SINE MIR 38 166 -76 22 56 0 0 chrX 18640431 18640467 -143959463 + AT_rich Low_complexity Low_complexity 1 36 0 1066 146 87 36 chrX 18640503 18640722 -143959208 + MER6 DNA MER2_type 2 231 -634 198 0 0 0 chrX 18640722 18640744 -143959186 + (GA)n Simple_repeat Simple_repeat 1 22 0 866 188 0 6 chrX 18640746 18640927 -143959003 + GA-rich Low_complexity Low_complexity 1 180 0 533 196 20 0 chrX 18640955 18641057 -143958873 + MER6 DNA MER2_type 241 344 -261 595 227 0 0 chrX 18641066 18641198 -143958732 + L1 LINE L1 4052 4183 -1963 4982 169 17 4 chrX 18641348 18642934 -143956996 + L1PA14 LINE L1 4549 6159 -2 2230 155 3 5 chrX 18642934 18643318 -143956612 + L1PB4 LINE L1 5769 6154 -2 1365 102 41 20 chrX 18643318 18643564 -143956366 + MER6 DNA MER2_type 614 864 -1 438 261 18 0 chrX 18643677 18643788 -143956142 + MER81 DNA DNA 1 113 -1 4059 121 3 28 chrX 18644055 18644701 -143955229 + L1PB3 LINE L1 5525 6154 0 207 0 0 0 chrX 18644706 18644729 -143955201 + (TAA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chrX 18645323 18645345 -143954585 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 236 365 17 26 chrX 18645773 18645888 -143954042 - MIR3 SINE MIR -92 116 3 252 86 0 0 chrX 18646539 18646574 -143953356 + (TG)n Simple_repeat Simple_repeat 1 35 0 494 265 27 92 chrX 18646602 18646854 -143953076 - MIR SINE MIR -21 241 4 1768 207 54 23 chrX 18647169 18647650 -143952280 + L1ME1 LINE L1 5685 6334 0 386 335 104 16 chrX 18649095 18649402 -143950528 + L1ME4a LINE L1 5716 6049 -72 4837 147 17 11 chrX 18649963 18650835 -143949095 - L1MB7 LINE L1 -24 6160 5284 750 247 81 0 chrX 18651427 18651613 -143948317 - MIR SINE MIR -44 218 18 180 157 0 118 chrX 18651951 18652002 -143947928 + L2 LINE L2 3228 3272 0 3222 175 28 0 chrX 18652506 18653088 -143946842 - MER90 LTR ERV1 -11 603 6 523 185 0 0 chrX 18653191 18653283 -143946647 - FLAM SINE Alu -11 132 41 188 83 0 28 chrX 18653289 18653325 -143946605 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4401 30 0 0 chrX 18653325 18653860 -143946070 - L1PA3 LINE L1 -24 6131 5597 2323 14 0 0 chrX 18653857 18654136 -143945794 + L1PA3 LINE L1 5328 5606 -549 * 11706 35 7 0 chrX 18654112 18655627 -143944303 + L1P LINE L1 2487 4012 -2134 30 59 0 0 chrX 18656036 18656087 -143943843 + AT_rich Low_complexity Low_complexity 1 51 0 627 296 20 20 chrX 18656530 18656834 -143943096 - L1MC/D LINE L1 -1995 5813 5510 230 296 185 22 chrX 18657162 18657297 -143942633 + L2 LINE L2 2601 2757 -557 281 374 61 5 chrX 18657321 18657519 -143942411 + L2 LINE L2 2904 3112 -160 238 253 84 0 chrX 18657547 18657642 -143942288 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 366 91 0 0 chrX 18658294 18658349 -143941581 - L1MA9 LINE L1 0 6312 6258 426 20 0 0 chrX 18658350 18658401 -143941529 + (TG)n Simple_repeat Simple_repeat 1 51 0 3319 158 5 3 chrX 18658401 18658978 -143940952 - L1MA9 LINE L1 -161 6151 5574 495 268 85 32 chrX 18659094 18659340 -143940590 - MIR SINE MIR 0 262 4 522 287 112 60 chrX 18659591 18659859 -143940071 + MLT1I LTR MaLR 128 409 0 1982 133 75 26 chrX 18660689 18661036 -143938894 - THE1B LTR MaLR 0 364 1 684 277 148 26 chrX 18661974 18662064 -143937866 + MLT1L LTR MaLR 1 79 -536 1239 202 67 52 chrX 18662064 18662525 -143937405 + LTR37B LTR ERV1 1 468 0 684 277 148 26 chrX 18662525 18662900 -143937030 + MLT1L LTR MaLR 79 523 -92 13055 24 0 0 chrX 18662925 18665231 -143934699 - L1PA3 LINE L1 0 6155 3857 6978 31 0 0 chrX 18665232 18666122 -143933808 + L1PA3 LINE L1 2949 3838 -2308 2681 70 8 6 chrX 18666477 18666835 -143933095 + L1PB2 LINE L1 5775 6133 -18 25 0 0 0 chrX 18666838 18666863 -143933067 + AT_rich Low_complexity Low_complexity 1 25 0 208 319 22 55 chrX 18667290 18667381 -143932549 - MIR3 SINE MIR -14 194 107 6279 97 6 0 chrX 18667498 18669274 -143930656 - L1PA10 LINE L1 -2 6166 4385 485 183 189 29 chrX 18670006 18670157 -143929773 + MER5A DNA MER1_type 4 182 -7 212 333 14 14 chrX 18670158 18670230 -143929700 - MIR3 SINE MIR -42 166 95 259 287 129 0 chrX 18670748 18670849 -143929081 - MER102a DNA MER1_type -7 323 210 420 200 164 50 chrX 18671011 18671151 -143928779 - L2 LINE L2 0 3313 3158 1257 277 66 29 chrX 18672474 18673182 -143926748 - L2 LINE L2 0 3313 2580 245 261 31 0 chrX 18673260 18673325 -143926605 - MIR SINE MIR -72 190 124 268 359 32 7 chrX 18673362 18673503 -143926427 - MIR SINE MIR -45 163 15 2210 158 65 10 chrX 18673751 18674151 -143925779 + MSTB LTR MaLR 3 424 -2 23 0 0 0 chrX 18674162 18674185 -143925745 + AT_rich Low_complexity Low_complexity 1 23 0 1196 224 93 93 chrX 18674834 18675611 -143924319 + LTR41 LTR ERVL 1 795 0 189 74 0 0 chrX 18675780 18675807 -143924123 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 268 212 30 0 chrX 18675808 18675874 -143924056 + (CAGAGA)n Simple_repeat Simple_repeat 6 73 0 271 213 11 161 chrX 18675983 18676157 -143923773 - L2 LINE L2 -70 3243 3096 1399 180 86 53 chrX 18676160 18676521 -143923409 - MLT1D LTR MaLR -9 496 124 534 272 206 22 chrX 18676591 18676937 -143922993 - L2 LINE L2 -254 3059 2654 263 350 0 0 chrX 18676940 18677020 -143922910 + MER117 DNA MER1_type 40 119 -78 249 258 3 0 chrX 18677742 18677814 -143922116 - L2 LINE L2 -4 3309 3237 321 184 174 0 chrX 18677837 18677935 -143921995 - L2 LINE L2 -778 2536 2422 293 319 60 17 chrX 18678408 18678557 -143921373 - MIR SINE MIR -66 142 36 564 187 47 0 chrX 18678771 18678878 -143921052 + L2 LINE L2 3197 3308 -5 180 111 0 0 chrX 18679478 18679505 -143920425 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 643 260 41 0 chrX 18679505 18679701 -143920229 - L1ME3A LINE L1 -4 6166 5963 314 283 97 9 chrX 18680282 18680395 -143919535 + L1MC4 LINE L1 6604 6726 -1316 542 238 199 0 chrX 18681919 18682070 -143917860 - MER5A DNA MER1_type 0 189 9 470 274 27 0 chrX 18682559 18682705 -143917225 + Charlie8 DNA MER1_type 419 568 -1849 1053 168 22 58 chrX 18682710 18682936 -143916994 - MER20 DNA MER1_type -1 218 1 1124 267 4 0 chrX 18682945 18683192 -143916738 - MIR SINE MIR 0 262 15 359 257 18 0 chrX 18683198 18683307 -143916623 + Charlie8 DNA MER1_type 579 689 -1728 2108 106 3 0 chrX 18683350 18683669 -143916261 - AluSq SINE Alu 0 320 1 1181 283 97 49 chrX 18684985 18685801 -143914129 + Charlie8 DNA MER1_type 1529 2383 -34 1179 283 91 17 chrX 18686957 18687430 -143912500 - L2 LINE L2 -2 3311 2804 200 35 35 0 chrX 18687440 18687469 -143912461 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1564 231 116 24 chrX 18687473 18687797 -143912133 + MLT1H1 LTR MaLR 16 402 -153 2179 122 7 3 chrX 18687797 18688093 -143911837 + AluSx SINE Alu 1 297 -15 1564 231 116 24 chrX 18688093 18688261 -143911669 + MLT1H1 LTR MaLR 402 553 -2 280 136 15 15 chrX 18688278 18688344 -143911586 + L1PB1 LINE L1 6086 6151 0 249 68 23 0 chrX 18688362 18688406 -143911524 + L1MB4 LINE L1 6126 6170 -10 866 288 144 0 chrX 18688413 18688774 -143911156 - L2 LINE L2 -1198 2116 1704 275 359 28 0 chrX 18689348 18689565 -143910365 + L1ME LINE L1 4106 4328 -1818 351 0 0 0 chrX 18689668 18689707 -143910223 + (TG)n Simple_repeat Simple_repeat 2 40 0 411 327 75 52 chrX 18689803 18690243 -143909687 + L1ME LINE L1 4585 5034 -1112 373 156 44 0 chrX 18690321 18690411 -143909519 - L1MB3 LINE L1 -3 6180 6087 377 204 184 20 chrX 18690477 18690624 -143909306 + L1ME LINE L1 5257 5427 -2381 1047 236 116 75 chrX 18690647 18691155 -143908775 + MLT1H LTR MaLR 21 549 0 406 298 57 27 chrX 18691238 18691500 -143908430 + L1ME LINE L1 5536 5805 -316 2248 112 0 7 chrX 18691826 18692131 -143907799 + AluSx SINE Alu 5 307 -5 326 218 0 0 chrX 18692144 18692199 -143907731 - L2 LINE L2 -12 3260 3206 216 191 0 0 chrX 18692310 18692357 -143907573 + A-rich Low_complexity Low_complexity 1 47 0 1713 176 48 27 chrX 18693179 18693554 -143906376 + MLT1B LTR MaLR 1 383 -7 261 297 22 0 chrX 18693781 18693872 -143906058 - HERVL LTR ERVL -3840 1814 1722 390 316 23 60 chrX 18694131 18694397 -143905533 - HERVL LTR ERVL -4321 1443 1188 204 226 0 19 chrX 18694499 18694552 -143905378 + (TTG)n Simple_repeat Simple_repeat 2 53 0 352 234 23 0 chrX 18694712 18694840 -143905090 + L1M4 LINE L1 3368 3498 -2648 2190 157 68 19 chrX 18694851 18695334 -143904596 + L1MB8 LINE L1 5672 6178 0 34 42 0 0 chrX 18695653 18695701 -143904229 + AT_rich Low_complexity Low_complexity 1 48 0 339 298 90 27 chrX 18695919 18696329 -143903601 - L1MC4a LINE L1 -1959 5849 5414 321 318 48 0 chrX 18696370 18696496 -143903434 - L1MC4a LINE L1 -804 5342 5211 21 36 0 0 chrX 18696547 18696575 -143903355 + AT_rich Low_complexity Low_complexity 1 28 0 2026 121 31 3 chrX 18696582 18696871 -143903059 - AluJo SINE Alu -15 297 1 1685 184 19 19 chrX 18697104 18697414 -143902516 - AluJo SINE Alu -2 310 1 845 271 25 58 chrX 18697835 18698151 -143901779 + L2 LINE L2 2748 3045 -268 1510 191 83 14 chrX 18698151 18698512 -143901418 + MLT1B LTR MaLR 1 386 -4 845 271 25 58 chrX 18698512 18698630 -143901300 + L2 LINE L2 3045 3165 -148 3539 125 24 3 chrX 18698640 18699232 -143900698 - L1MA3 LINE L1 0 6305 5702 1371 101 0 5 chrX 18699232 18699431 -143900499 + L1MA3 LINE L1 5506 5703 -601 640 228 6 43 chrX 18699434 18699596 -143900334 + L2 LINE L2 3158 3313 0 480 309 38 58 chrX 18699849 18700192 -143899738 - LTR16C LTR ERVL -52 439 104 546 266 76 22 chrX 18701270 18701454 -143898476 - MIR SINE MIR -16 246 53 1388 224 151 18 chrX 18701495 18701999 -143897931 + MLT1G LTR MaLR 20 590 0 238 135 0 0 chrX 18702324 18702361 -143897569 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 280 308 34 87 chrX 18703240 18703506 -143896424 + MLT1J LTR MaLR 113 364 -147 564 219 148 6 chrX 18703773 18703932 -143895998 - MER5A DNA MER1_type 0 189 5 186 43 0 0 chrX 18703992 18704015 -143895915 + (CA)n Simple_repeat Simple_repeat 2 24 0 228 35 0 0 chrX 18704015 18704044 -143895886 + (GA)n Simple_repeat Simple_repeat 1 29 0 350 253 14 12 chrX 18704045 18704147 -143895783 + MER5A DNA MER1_type 67 162 -16 567 238 106 5 chrX 18706957 18707123 -143892807 + MER5A DNA MER1_type 5 189 0 4268 121 36 8 chrX 18707729 18708454 -143891476 - L1MA8 LINE L1 -5 6286 5542 193 300 0 17 chrX 18710269 18710329 -143889601 - L2 LINE L2 0 3272 3214 1965 134 48 31 chrX 18710450 18710808 -143889122 - THE1B LTR MaLR 0 364 1 873 303 40 18 chrX 18710972 18711379 -143888551 + LTR16C LTR ERVL 72 457 0 396 206 128 0 chrX 18711723 18711825 -143888105 - MER63 DNA MER1_type -94 742 2 26 30 0 0 chrX 18713944 18713977 -143885953 + AT_rich Low_complexity Low_complexity 1 33 0 270 311 134 18 chrX 18714235 18714399 -143885531 + MIR SINE MIR 75 257 -5 265 272 132 29 chrX 18714396 18714532 -143885398 + L2 LINE L2 2725 2874 -440 * 621 312 56 26 chrX 18714573 18714836 -143885094 + LTR16C LTR ERVL 3 273 -218 1826 240 59 12 chrX 18714836 18715327 -143884603 - LTR40a LTR ERVL 0 519 6 628 203 28 7 chrX 18715353 18715496 -143884434 + LTR16C LTR ERVL 296 441 -50 908 193 45 6 chrX 18716209 18716385 -143883545 + MER5A DNA MER1_type 7 189 0 563 241 9 0 chrX 18717271 18717383 -143882547 + MER81 DNA DNA 1 113 -1 343 263 50 56 chrX 18717732 18717911 -143882019 + MER5B DNA MER1_type 1 178 0 853 190 18 0 chrX 18717925 18718088 -143881842 - MER5B DNA MER1_type -6 172 7 320 298 152 6 chrX 18718107 18718265 -143881665 + MER5A DNA MER1_type 9 189 0 450 244 191 8 chrX 18719633 18719764 -143880166 + MER5A DNA MER1_type 35 189 0 462 310 13 19 chrX 18719772 18719927 -143880003 + MER5B DNA MER1_type 1 154 -24 2111 113 7 39 chrX 18720069 18720379 -143879551 + AluSx SINE Alu 1 300 -12 248 264 56 0 chrX 18720488 18720560 -143879370 + MIR SINE MIR 66 141 -67 1377 147 31 0 chrX 18720621 18720845 -143879085 + LTR32 LTR ERVL 14 244 -227 715 178 68 0 chrX 18720878 18721024 -143878906 + LTR32 LTR ERVL 316 471 0 320 225 0 50 chrX 18721037 18721117 -143878813 - MER81 DNA DNA -38 76 1 8546 176 73 20 chrX 18721407 18721472 -143878458 + L1MA2 LINE L1 13 73 -7492 2485 85 0 0 chrX 18721472 18721777 -143878153 - AluSc SINE Alu -4 305 1 8546 176 73 20 chrX 18721777 18723472 -143876458 + L1MA2 LINE L1 73 1865 -5700 * 11119 150 21 12 chrX 18723462 18723994 -143875936 + L1MA2 LINE L1 4446 4972 -2751 2266 92 0 3 chrX 18723994 18724287 -143875643 - AluY SINE Alu -19 292 1 11119 150 21 12 chrX 18724287 18726139 -143873791 + L1MA2 LINE L1 4972 6867 -856 2230 105 40 35 chrX 18726139 18726512 -143873418 + THE1C LTR MaLR 1 375 0 11119 150 21 12 chrX 18726512 18727360 -143872570 + L1MA2 LINE L1 6867 7706 -17 3220 71 0 7 chrX 18727361 18727796 -143872134 - MLT2A1 LTR ERVL -10 434 3 252 0 0 0 chrX 18728068 18728096 -143871834 + (TGG)n Simple_repeat Simple_repeat 2 29 0 571 283 75 97 chrX 18728328 18729041 -143870889 + L2 LINE L2 2602 3312 -1 343 22 43 0 chrX 18729099 18729145 -143870785 + LTR37A LTR ERV1 1 48 -378 1267 173 58 4 chrX 18729146 18729406 -143870524 - MER58B DNA MER1_type -2 339 66 2695 176 76 34 chrX 18729414 18729832 -143870098 - L1ME1 LINE L1 -141 6025 5626 2220 92 3 0 chrX 18729832 18730156 -143869774 - AluSx SINE Alu 0 325 1 2695 176 76 34 chrX 18730156 18730584 -143869346 - L1ME1 LINE L1 -540 5626 5140 1371 202 102 11 chrX 18730581 18730962 -143868968 + L1ME1 LINE L1 4734 5149 -997 * 350 198 50 20 chrX 18730955 18731056 -143868874 - L1MC/D LINE L1 -2073 5735 5632 * 683 200 113 6 chrX 18732032 18732152 -143867778 - MER5B DNA MER1_type -1 177 34 10527 28 0 0 chrX 18732152 18734159 -143865771 - L1PA4 LINE L1 0 6155 4139 683 200 113 6 chrX 18734159 18734198 -143865732 - MER5B DNA MER1_type -144 34 1 1425 206 17 78 chrX 18734221 18734634 -143865296 + MLT1B LTR MaLR 1 388 -2 23 0 0 0 chrX 18735236 18735259 -143864671 + AT_rich Low_complexity Low_complexity 1 23 0 2290 83 0 3 chrX 18735259 18735547 -143864383 - AluSx SINE Alu -21 291 5 186 167 0 0 chrX 18735671 18735707 -143864223 + (CA)n Simple_repeat Simple_repeat 2 37 0 1604 297 49 19 chrX 18735962 18737060 -143862870 - HERV16 LTR ERVL -2904 2092 982 2583 206 74 25 chrX 18737070 18737663 -143862267 + MLT1E1 LTR MaLR 5 626 -28 2999 38 8 0 chrX 18737666 18738033 -143861897 + L1PA3 LINE L1 5783 6152 -3 45 0 0 0 chrX 18738033 18738078 -143861852 + AT_rich Low_complexity Low_complexity 1 45 0 629 280 71 52 chrX 18738085 18738449 -143861481 - HERV16 LTR ERVL -4015 981 611 1416 246 47 40 chrX 18739001 18739452 -143860478 - LTR16A1 LTR ERVL 0 457 4 898 284 135 42 chrX 18739501 18739931 -143859999 + L2 LINE L2 2804 3273 -40 180 111 0 0 chrX 18739958 18739985 -143859945 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1006 210 11 0 chrX 18740038 18740224 -143859706 - MER5A DNA MER1_type 0 189 2 347 219 203 21 chrX 18740492 18740729 -143859201 + L1ME4a LINE L1 5838 6117 -4 22 80 0 0 chrX 18741467 18741517 -143858413 + AT_rich Low_complexity Low_complexity 1 50 0 2474 65 16 3 chrX 18741614 18741921 -143858009 + AluY SINE Alu 1 311 0 9664 162 14 7 chrX 18742027 18742051 -143857879 - L1M1 LINE L1 -743 6822 6800 2169 126 32 24 chrX 18742051 18742423 -143857507 + THE1C LTR MaLR 1 375 0 10581 109 15 28 chrX 18742423 18744024 -143855906 + THE1C-int LTR MaLR 1 1580 0 2260 139 16 16 chrX 18744024 18744399 -143855531 + THE1C LTR MaLR 1 375 0 9664 162 14 7 chrX 18744399 18746442 -143853488 - L1M1 LINE L1 -764 6801 4843 3833 159 6 6 chrX 18746436 18747104 -143852826 - L1M1 LINE L1 -6886 679 12 * 1788 262 73 10 chrX 18747369 18747995 -143851935 + L1ME3 LINE L1 5489 6154 -8 183 314 121 0 chrX 18748106 18748230 -143851700 + L2 LINE L2 3163 3301 -12 409 112 0 61 chrX 18748597 18748695 -143851235 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 516 77 0 0 chrX 18749376 18749454 -143850476 + (CA)n Simple_repeat Simple_repeat 2 79 0 1050 208 27 23 chrX 18750876 18751097 -143848833 - MER58A DNA MER1_type 0 224 3 494 318 80 19 chrX 18751104 18751368 -143848562 - L1MEd LINE L1 -4969 1150 871 252 269 28 9 chrX 18752366 18752474 -143847456 + L1 LINE L1 2248 2357 -3789 264 313 94 28 chrX 18752509 18753177 -143846753 + L1 LINE L1 2423 3134 -3012 2168 151 35 55 chrX 18753190 18753767 -143846163 - MLT2A2 LTR ERVL 0 554 1 1197 107 36 5 chrX 18753860 18754056 -143845874 - L1MA9 LINE L1 -278 6034 5833 906 123 0 0 chrX 18754049 18754195 -143845735 + L1MA9 LINE L1 6018 6163 -149 * 303 271 86 41 chrX 18754176 18754397 -143845533 - L1MC/D LINE L1 -2264 5544 5314 * 758 134 0 0 chrX 18754558 18754692 -143845238 + L1MA9 LINE L1 6169 6302 -10 270 241 62 47 chrX 18754787 18754966 -143844964 + L1 LINE L1 3547 3737 -2409 * 484 285 99 29 chrX 18754965 18755452 -143844478 + L1ME3A LINE L1 3875 4395 -1751 234 0 0 0 chrX 18755478 18755504 -143844426 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1061 210 37 14 chrX 18755549 18755763 -143844167 + MER58A DNA MER1_type 3 221 -3 301 239 0 0 chrX 18755902 18755973 -143843957 + MER58 DNA MER1_type 211 281 -60 1824 56 0 4 chrX 18756000 18756234 -143843696 + L1PA8 LINE L1 5940 6172 0 506 307 64 37 chrX 18756287 18757466 -143842464 + L1ME3A LINE L1 4616 5884 -286 499 215 44 7 chrX 18758377 18758512 -143841418 - L1ME3A LINE L1 -4 6560 6421 1801 224 51 62 chrX 18758513 18758765 -143841165 - L1ME3A LINE L1 -249 6315 6062 1616 123 76 47 chrX 18758765 18759107 -143840823 - L1MA7 LINE L1 -2 6289 5938 1801 224 51 62 chrX 18759107 18759502 -143840428 - L1ME3A LINE L1 -502 6062 5675 234 218 0 36 chrX 18759505 18759560 -143840370 + CT-rich Low_complexity Low_complexity 4 56 0 559 259 118 7 chrX 18759564 18759853 -143840077 - L1ME3A LINE L1 -875 5665 5345 301 267 0 0 chrX 18759855 18759915 -143840015 + polypyrimidine Low_complexity Low_complexity 1 60 0 755 83 0 68 chrX 18759916 18760108 -143839822 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 501 168 13 45 chrX 18760134 18760289 -143839641 + CT-rich Low_complexity Low_complexity 1 150 0 2373 245 74 28 chrX 18760300 18761462 -143838468 - L1ME3A LINE L1 -1210 5330 4116 1197 217 87 32 chrX 18761516 18761862 -143838068 + MLT1A1 LTR MaLR 1 365 0 4451 197 10 75 chrX 18761862 18762975 -143836955 + MLT1A1-int LTR MaLR 1 1040 -695 340 272 56 6 chrX 18763011 18763191 -143836739 - L1ME3A LINE L1 -2768 3772 3584 320 403 28 39 chrX 18763377 18763660 -143836270 - L1ME3A LINE L1 -6242 298 19 389 292 47 41 chrX 18763715 18763886 -143836044 - L1M4b LINE L1 -5329 1530 1359 247 302 0 0 chrX 18764442 18764505 -143835425 + L2 LINE L2 2686 2748 -566 252 389 47 27 chrX 18764751 18764900 -143835030 + L2 LINE L2 3116 3267 -5 2516 16 3 20 chrX 18766011 18766316 -143833614 + L1PA4 LINE L1 5856 6155 0 2208 165 78 41 chrX 18766778 18767262 -143832668 - MLT1D LTR MaLR -1 504 3 313 288 98 20 chrX 18767306 18767459 -143832471 + MIR SINE MIR 93 257 -5 441 284 60 50 chrX 18768441 18768659 -143831271 - L2 LINE L2 -2 3311 3092 * 1641 292 165 19 chrX 18768640 18769665 -143830265 - L2 LINE L2 -317 2955 1781 776 261 39 19 chrX 18770398 18770658 -143829272 + MLT1J2 LTR MaLR 41 305 -145 615 247 68 0 chrX 18770970 18771132 -143828798 + MIR SINE MIR 73 245 -17 203 262 24 0 chrX 18771288 18771330 -143828600 - L2 LINE L2 -9 3263 3221 191 250 0 0 chrX 18771478 18771522 -143828408 + MIR SINE MIR 147 190 -72 810 137 48 27 chrX 18772907 18773053 -143826877 + FRAM SINE Alu 1 146 -30 463 188 21 0 chrX 18773055 18773151 -143826779 - L1MD1 LINE L1 -5 6237 6140 624 161 0 99 chrX 18773155 18773316 -143826614 - MER53 DNA DNA 0 189 45 453 36 0 0 chrX 18773366 18773421 -143826509 + (TA)n Simple_repeat Simple_repeat 2 56 0 1474 180 16 3 chrX 18773428 18773733 -143826197 - AluY SINE Alu 0 311 3 28 61 0 0 chrX 18773831 18773880 -143826050 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chrX 18773954 18773979 -143825951 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chrX 18774015 18774051 -143825879 + AT_rich Low_complexity Low_complexity 1 36 0 4147 89 6 6 chrX 18774271 18774897 -143825033 + L1MA3 LINE L1 5523 6148 -157 2982 28 3 0 chrX 18774895 18775259 -143824671 - L1PA6 LINE L1 -212 5942 5578 * 1599 46 0 0 chrX 18775259 18775452 -143824478 + L1PA6 LINE L1 5955 6151 -3 1227 78 0 0 chrX 18775461 18775628 -143824302 + L1MA3 LINE L1 6139 6305 0 465 66 0 0 chrX 18775708 18775769 -143824161 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 210 250 62 0 chrX 18775771 18775819 -143824111 - L2 LINE L2 -12 3301 3251 * 812 258 8 68 chrX 18775787 18775834 -143824096 - MIR SINE MIR -25 237 189 2054 109 34 14 chrX 18775834 18776127 -143823803 + AluSx SINE Alu 1 299 -13 812 258 8 68 chrX 18776127 18776331 -143823599 - MIR SINE MIR -73 189 1 667 241 159 0 chrX 18777444 18777651 -143822279 - MIR SINE MIR -12 250 11 384 269 199 46 chrX 18778150 18778366 -143821564 + MIR SINE MIR 14 262 0 1111 216 88 35 chrX 18778848 18779278 -143820652 - L1MC5 LINE L1 -36 7925 7473 1012 206 72 33 chrX 18779294 18779382 -143820548 - L1MC5 LINE L1 -390 7571 7488 198 0 0 0 chrX 18779382 18779404 -143820526 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 336 64 0 0 chrX 18779403 18779450 -143820480 + (CA)n Simple_repeat Simple_repeat 1 47 0 1012 206 72 33 chrX 18779404 18779720 -143820210 - L1MC5 LINE L1 -473 7488 7199 496 337 154 37 chrX 18780590 18781557 -143818373 + L2 LINE L2 1762 2841 -473 595 322 4 37 chrX 18782411 18782653 -143817277 - MIR SINE MIR -8 254 21 496 240 95 14 chrX 18782700 18782947 -143816983 - LTR16C LTR ERVL 0 491 187 323 244 269 19 chrX 18783705 18783865 -143816065 - MIR SINE MIR -12 250 51 192 77 0 0 chrX 18783871 18783897 -143816033 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 374 269 106 44 chrX 18784160 18784320 -143815610 - MIR3 SINE MIR -28 180 11 241 312 0 13 chrX 18786874 18786951 -143812979 + GA-rich Low_complexity Low_complexity 3 78 0 720 265 83 13 chrX 18788041 18788271 -143811659 - MIR SINE MIR -2 260 15 277 260 0 26 chrX 18788855 18788932 -143810998 - MIR3 SINE MIR -11 197 123 31 0 0 0 chrX 18788943 18788974 -143810956 + AT_rich Low_complexity Low_complexity 1 31 0 193 347 0 0 chrX 18789037 18789086 -143810844 - L2 LINE L2 -88 3225 3177 434 298 132 29 chrX 18789098 18789340 -143810590 + MLT1K LTR MaLR 7 273 -315 236 239 33 22 chrX 18789841 18789933 -143809997 + (TTTA)n Simple_repeat Simple_repeat 2 94 0 468 0 0 0 chrX 18790111 18790163 -143809767 + (TA)n Simple_repeat Simple_repeat 1 52 0 250 371 84 34 chrX 18790720 18790957 -143808973 + L2 LINE L2 2831 3079 -193 1372 279 111 53 chrX 18790974 18791958 -143807972 - L1MEd LINE L1 -5075 1044 4 1561 237 151 8 chrX 18793388 18793877 -143806053 + MLT1G LTR MaLR 32 590 0 345 283 23 107 chrX 18793896 18794019 -143805911 + ERVL LTR ERVL 3764 3896 -1868 1790 180 7 7 chrX 18794019 18794324 -143805606 + AluJb SINE Alu 1 305 -7 345 283 23 107 chrX 18794324 18794508 -143805422 + ERVL LTR ERVL 3896 4045 -1719 401 177 13 0 chrX 18794746 18794825 -143805105 + MER116 DNA Mariner 1 80 0 1210 269 16 72 chrX 18795549 18796051 -143803879 - L2 LINE L2 -36 3277 2804 641 228 146 0 chrX 18796060 18796218 -143803712 + MER5A DNA MER1_type 9 189 0 717 237 65 16 chrX 18796218 18796463 -143803467 - L2 LINE L2 -504 2810 2554 232 365 153 15 chrX 18796611 18796885 -143803045 - L2 LINE L2 -157 3115 2804 189 324 44 0 chrX 18797162 18797230 -143802700 + MIR SINE MIR 75 145 -117 204 328 15 0 chrX 18797303 18797370 -143802560 + MER5A DNA MER1_type 122 189 0 330 289 45 27 chrX 18797370 18797493 -143802437 - MIR3 SINE MIR -48 160 36 631 325 43 5 chrX 18797517 18797726 -143802204 + MIR SINE MIR 46 262 0 608 237 106 32 chrX 18799288 18799654 -143800276 + MLT1H LTR MaLR 30 543 -6 198 276 81 35 chrX 18799795 18799882 -143800048 - L2 LINE L2 -7 3265 3175 523 301 110 34 chrX 18801507 18801716 -143798214 - MIR SINE MIR -31 231 7 254 185 56 0 chrX 18803113 18803167 -143796763 - L1MC5 LINE L1 -73 7888 7832 426 201 52 35 chrX 18803272 18803446 -143796484 - L1MC5 LINE L1 -182 7779 7603 1273 261 75 25 chrX 18803475 18803957 -143795973 - LTR33 LTR ERVL -15 506 1 287 271 57 43 chrX 18803957 18804167 -143795763 - L1MC5 LINE L1 -398 7563 7351 253 268 115 25 chrX 18804149 18804306 -143795624 - L1MC5 LINE L1 -522 7439 7269 * 740 214 31 6 chrX 18804421 18804580 -143795350 + MER5B DNA MER1_type 12 174 -4 185 194 56 0 chrX 18805422 18805458 -143794472 - MIR SINE MIR -11 251 214 397 147 0 0 chrX 18806237 18806305 -143793625 - L1MA9 LINE L1 -38 6274 6207 359 280 96 16 chrX 18806401 18806526 -143793404 + L2 LINE L2 3133 3267 -5 278 106 21 0 chrX 18806646 18806693 -143793237 + (TC)n Simple_repeat Simple_repeat 1 48 0 465 300 98 34 chrX 18806702 18807112 -143792818 + L2 LINE L2 1711 2146 -1168 1335 210 111 36 chrX 18807113 18807446 -143792484 - LTR16C LTR ERVL 0 491 134 503 211 125 8 chrX 18807585 18807713 -143792217 - MIR SINE MIR -30 232 90 381 297 81 14 chrX 18807725 18807873 -143792057 + L2 LINE L2 2201 2358 -956 189 171 0 0 chrX 18808143 18808178 -143791752 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 675 261 136 46 chrX 18808180 18808704 -143791226 - L1ME4a LINE L1 -214 5907 5337 335 320 64 35 chrX 18808788 18808991 -143790939 - L1ME4a LINE L1 -927 5219 5011 2916 9 0 0 chrX 18809070 18809388 -143790542 - AluYb8 SINE Alu 0 318 1 232 208 118 34 chrX 18809415 18809593 -143790337 - L1ME4a LINE L1 -1339 4807 4615 300 259 86 35 chrX 18809696 18809893 -143790037 - L1ME4a LINE L1 -1697 4449 4243 494 277 78 10 chrX 18810143 18810439 -143789491 - L1ME4a LINE L1 -2203 3943 3628 1262 336 102 23 chrX 18810940 18811687 -143788243 - L3 LINE CR1 -85 1492 687 4216 112 10 65 chrX 18811745 18812999 -143786931 + L1MA8 LINE L1 4853 6040 -251 2991 76 32 5 chrX 18813000 18813433 -143786497 + L1MA1 LINE L1 5858 6302 0 1424 119 24 4 chrX 18813481 18813733 -143786197 + L1MA8 LINE L1 6025 6281 -10 420 287 9 19 chrX 18813735 18813843 -143786087 - L3 LINE CR1 -926 651 545 188 321 74 0 chrX 18813936 18814017 -143785913 - L3 LINE CR1 -1066 511 425 1971 206 50 12 chrX 18814022 18814518 -143785412 + L1ME1 LINE L1 5647 6161 -5 459 402 60 22 chrX 18814540 18814906 -143785024 - L3 LINE CR1 -1158 419 40 904 304 179 22 chrX 18815895 18816431 -143783499 - L3 LINE CR1 -2 1575 956 181 326 92 31 chrX 18817267 18817365 -143782565 - MIR SINE MIR -157 105 2 4095 115 58 5 chrX 18817567 18818188 -143781742 + L1MA8 LINE L1 5584 6245 -46 376 77 31 0 chrX 18818188 18818253 -143781677 + (TA)n Simple_repeat Simple_repeat 1 67 0 4095 115 58 5 chrX 18818253 18818298 -143781632 + L1MA8 LINE L1 6245 6286 -5 546 259 29 79 chrX 18818310 18818588 -143781342 + MLT1J LTR MaLR 95 358 -153 2083 144 6 40 chrX 18818792 18819140 -143780790 - MER1B DNA MER1_type 0 337 2 201 253 55 75 chrX 18820372 18820518 -143779412 + L2 LINE L2 1640 1782 -1532 677 134 22 30 chrX 18820539 18820673 -143779257 + L1MD1 LINE L1 6110 6242 0 4222 33 12 12 chrX 18820676 18821192 -143778738 + L1PA3 LINE L1 5640 6155 0 27 0 0 0 chrX 18821192 18821219 -143778711 + AT_rich Low_complexity Low_complexity 1 27 0 288 281 146 28 chrX 18821731 18821909 -143778021 + MIR SINE MIR 24 222 -40 1207 156 9 45 chrX 18822997 18823221 -143776709 + AluJb SINE Alu 83 298 -14 1383 166 108 25 chrX 18823390 18823704 -143776226 + MER58B DNA MER1_type 1 340 -1 640 188 56 80 chrX 18823709 18823922 -143776008 + MER3 DNA MER1_type 1 208 -1 * 1014 147 0 6 chrX 18823760 18823930 -143776000 - MER3 DNA MER1_type 0 209 41 752 207 24 12 chrX 18824074 18824238 -143775692 - LTR16C LTR ERVL -2 489 324 2798 44 11 0 chrX 18824238 18824650 -143775280 - L1P2 LINE L1 -723 5431 5016 2845 22 0 0 chrX 18824650 18824960 -143774970 + L1PA5 LINE L1 5840 6151 -3 821 246 66 6 chrX 18824966 18825149 -143774781 - LTR16C LTR ERVL -143 348 155 2341 85 14 0 chrX 18825889 18826184 -143773746 + AluSg SINE Alu 1 299 -11 2282 147 70 0 chrX 18826679 18827020 -143772910 - MLT1A1 LTR MaLR 0 365 1 1542 216 50 76 chrX 18827039 18827497 -143772433 - MLT1J1 LTR MaLR 0 446 1 1651 188 3 16 chrX 18828881 18829184 -143770746 + AluJb SINE Alu 1 299 -13 540 286 24 36 chrX 18829867 18830035 -143769895 - MER5A DNA MER1_type -3 186 21 509 275 21 7 chrX 18830370 18830512 -143769418 + MIR SINE MIR 116 259 -3 338 380 40 0 chrX 18830556 18830782 -143769148 - L2 LINE L2 -623 2691 2457 5126 178 17 3 chrX 18831086 18832385 -143767545 + L1MB7 LINE L1 4859 6176 -8 525 157 22 0 chrX 18832392 18832526 -143767404 + G-rich Low_complexity Low_complexity 5 141 0 262 267 17 17 chrX 18832528 18832644 -143767286 + GA-rich Low_complexity Low_complexity 5 120 0 376 196 56 19 chrX 18832722 18832829 -143767101 + MIR3 SINE MIR 59 169 -39 21 0 0 0 chrX 18833867 18833888 -143766042 + AT_rich Low_complexity Low_complexity 1 21 0 345 327 0 0 chrX 18834041 18834145 -143765785 + L2 LINE L2 2683 2786 -528 258 356 56 56 chrX 18834271 18834538 -143765392 + L2 LINE L2 2949 3215 -57 1488 217 40 29 chrX 18834679 18835057 -143764873 - L1ME3A LINE L1 -112 6058 5677 1755 130 12 0 chrX 18836299 18836552 -143763378 - L1PB3 LINE L1 -2 6152 5897 688 303 108 12 chrX 18836873 18837216 -143762714 - LTR16C LTR ERVL -43 448 73 397 284 47 9 chrX 18837726 18837942 -143761988 - L2 LINE L2 -26 3287 2974 700 218 2 3 chrX 18838358 18838507 -143761423 - L1ME1 LINE L1 -5 6161 6031 214 267 133 0 chrX 18839090 18839180 -143760750 - MIR SINE MIR -10 252 151 22 35 0 0 chrX 18839507 18839536 -143760394 + AT_rich Low_complexity Low_complexity 1 29 0 2432 90 3 0 chrX 18839580 18839892 -143760038 + AluSp SINE Alu 1 313 0 583 187 179 0 chrX 18840080 18840214 -143759716 + MER5A DNA MER1_type 26 183 -6 408 206 65 11 chrX 18840453 18840545 -143759385 + L2 LINE L2 3187 3283 -30 2263 142 35 16 chrX 18840548 18840921 -143759009 - MSTB LTR MaLR 0 426 47 314 135 0 0 chrX 18840921 18840973 -143758957 + MADE1 DNA Mariner 1 52 -28 817 227 57 43 chrX 18841185 18841467 -143758463 - MLT1J1 LTR MaLR -19 427 142 2361 214 114 2 chrX 18841468 18841950 -143757980 + MLT1F LTR MaLR 1 536 -6 447 241 90 23 chrX 18841955 18842088 -143757842 - MLT1J2 LTR MaLR -308 142 1 193 29 59 0 chrX 18844229 18844263 -143755667 + (TA)n Simple_repeat Simple_repeat 1 36 0 2135 117 30 0 chrX 18845413 18845711 -143754219 - AluSx SINE Alu -5 307 1 790 179 231 0 chrX 18845897 18846109 -143753821 - MER5C DNA MER1_type -63 261 1 504 241 41 67 chrX 18846635 18846830 -143753100 + MIR SINE MIR 19 208 -54 25 0 0 0 chrX 18848324 18848349 -143751581 + AT_rich Low_complexity Low_complexity 1 25 0 426 217 0 0 chrX 18848423 18848506 -143751424 + LTR16A LTR ERVL 366 448 -2 726 282 138 52 chrX 18849915 18850372 -143749558 - MLT1H LTR MaLR -16 533 38 431 323 180 6 chrX 18850439 18850606 -143749324 + MER91A DNA MER1_type 1 196 0 331 280 211 32 chrX 18850986 18851265 -143748665 + MLT1J1 LTR MaLR 115 443 -3 531 324 14 0 chrX 18851292 18851440 -143748490 - L2 LINE L2 -2028 1286 1137 428 272 32 8 chrX 18851448 18851573 -143748357 + L2 LINE L2 595 722 -2592 687 237 62 17 chrX 18851609 18851786 -143748144 - LTR16A1 LTR ERVL -3 454 270 344 210 227 17 chrX 18851777 18851896 -143748034 - LTR16A1 LTR ERVL -313 144 1 * 357 361 105 13 chrX 18852770 18853008 -143746922 - L2 LINE L2 -13 3259 3000 34 42 0 0 chrX 18853035 18853083 -143746847 + AT_rich Low_complexity Low_complexity 1 48 0 2071 228 55 35 chrX 18854099 18854681 -143745249 + L1ME1 LINE L1 5581 6334 0 907 142 0 22 chrX 18855071 18855205 -143744725 + FLAM_C SINE Alu 1 131 -2 502 172 11 0 chrX 18855636 18855729 -143744201 + MER20 DNA MER1_type 126 219 0 22 35 0 0 chrX 18857863 18857892 -143742038 + AT_rich Low_complexity Low_complexity 1 29 0 2342 122 35 24 chrX 18858641 18859010 -143740920 - THE1C LTR MaLR 0 375 3 1600 87 31 4 chrX 18859827 18860056 -143739874 + L1P4 LINE L1 5316 5550 -615 391 317 49 30 chrX 18860076 18860341 -143739589 + L1MC4a LINE L1 7146 7415 -393 * 423 273 119 37 chrX 18860309 18860686 -143739244 + L1MC5 LINE L1 7292 7699 -262 679 203 157 0 chrX 18860743 18860896 -143739034 + MER5A DNA MER1_type 13 189 0 2277 155 76 9 chrX 18861302 18861735 -143738195 + MLT1C LTR MaLR 6 467 0 787 270 51 13 chrX 18861793 18862030 -143737900 - MIR SINE MIR -11 251 6 516 231 25 85 chrX 18863183 18863382 -143736548 - 7SK RNA RNA -1 192 6 257 61 0 0 chrX 18863383 18863416 -143736514 - MIR SINE MIR -61 147 115 1453 256 60 46 chrX 18863517 18863904 -143736026 - L2 LINE L2 -176 3137 2743 2485 68 0 0 chrX 18863904 18864199 -143735731 + AluY SINE Alu 1 295 -16 1453 256 60 46 chrX 18864199 18864545 -143735385 - L2 LINE L2 -570 2743 2403 1035 210 6 0 chrX 18864545 18864726 -143735204 - MER58A DNA MER1_type 0 224 43 1535 261 43 21 chrX 18864789 18865210 -143734720 + MLT1G1 LTR MaLR 1 430 -165 420 117 0 0 chrX 18865281 18865358 -143734572 + (GA)n Simple_repeat Simple_repeat 2 78 0 2084 118 0 0 chrX 18865360 18865640 -143734290 - AluSx SINE Alu -32 280 1 469 156 21 31 chrX 18865642 18865738 -143734192 + MLT1G1 LTR MaLR 491 585 -10 773 286 103 41 chrX 18865750 18866112 -143733818 - MLT1I LTR MaLR 0 409 49 827 266 24 12 chrX 18866171 18866419 -143733511 - L2 LINE L2 -941 2373 2123 1766 156 64 26 chrX 18866419 18866765 -143733165 + THE1C LTR MaLR 1 359 -16 1269 282 83 5 chrX 18866766 18867188 -143732742 - L2 LINE L2 -1196 2118 1664 398 268 54 36 chrX 18867236 18867348 -143732582 - MIR3 SINE MIR -88 120 7 1184 209 19 0 chrX 18868324 18868530 -143731400 - MER63A DNA MER1_type 0 210 1 350 163 7 220 chrX 18868722 18868863 -143731067 - MER5B DNA MER1_type -62 116 6 432 333 11 6 chrX 18868878 18869052 -143730878 + MER5B DNA MER1_type 4 178 0 516 281 85 6 chrX 18869854 18870018 -143729912 + MIR SINE MIR 31 207 -55 882 192 54 6 chrX 18870570 18870737 -143729193 - MER5B DNA MER1_type -3 175 1 422 293 57 0 chrX 18870744 18870850 -143729080 + L2 LINE L2 3144 3255 -17 317 263 76 44 chrX 18872080 18872280 -143727650 - MER20B DNA MER1_type -5 214 2 2168 200 63 30 chrX 18873295 18873821 -143726109 + L1ME3 LINE L1 5620 6162 0 198 0 0 0 chrX 19073825 19073847 -143526083 + (T)n Simple_repeat Simple_repeat 1 22 0 6653 30 6 1 chrX 19074817 19075613 -143524317 + L1PA7 LINE L1 5355 6154 0 228 35 0 0 chrX 19079300 19079329 -143520601 + (A)n Simple_repeat Simple_repeat 1 29 0 695 243 140 0 chrX 19081082 19081296 -143518634 - MIR SINE MIR -17 245 2 227 250 23 34 chrX 19083021 19083109 -143516821 + CT-rich Low_complexity Low_complexity 4 90 0 318 174 206 45 chrX 19083895 19084050 -143515880 - Charlie7 DNA MER1_type 0 2612 2433 25 31 0 0 chrX 19086093 19086125 -143513805 + AT_rich Low_complexity Low_complexity 1 32 0 610 228 16 8 chrX 19088910 19089037 -143510893 + MER5A DNA MER1_type 55 182 -7 22 0 0 0 chrX 19089285 19089307 -143510623 + AT_rich Low_complexity Low_complexity 1 22 0 917 132 0 0 chrX 19089830 19089959 -143509971 + FLAM_C SINE Alu 2 130 -13 24 0 0 0 chrX 19090161 19090185 -143509745 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 19091243 19091272 -143508658 + AT_rich Low_complexity Low_complexity 1 29 0 299 133 0 33 chrX 19093212 19093272 -143506658 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 320 278 0 41 chrX 19093272 19093369 -143506561 + L1MC4 LINE L1 6611 6703 -1339 183 156 0 0 chrX 19093369 19093401 -143506529 + (TA)n Simple_repeat Simple_repeat 2 33 0 279 0 0 0 chrX 19093401 19093432 -143506498 + (CA)n Simple_repeat Simple_repeat 2 32 0 249 222 0 0 chrX 19093694 19093748 -143506182 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chrX 19095221 19095242 -143504688 + AT_rich Low_complexity Low_complexity 1 21 0 330 26 0 0 chrX 19095581 19095620 -143504310 + (TG)n Simple_repeat Simple_repeat 2 40 0 1720 151 41 0 chrX 19097268 19097563 -143502367 - AluJb SINE Alu 0 306 1 206 174 22 0 chrX 19097882 19097928 -143502002 + (TA)n Simple_repeat Simple_repeat 2 48 0 917 247 55 13 chrX 19097992 19098227 -143501703 + MIR SINE MIR 18 262 0 2146 106 69 29 chrX 19098862 19099212 -143500718 + THE1B LTR MaLR 1 364 0 11114 76 15 2 chrX 19099212 19100757 -143499173 + THE1B-int LTR MaLR 1 1565 -15 198 0 0 0 chrX 19101767 19101789 -143498141 + (T)n Simple_repeat Simple_repeat 1 22 0 366 313 47 69 chrX 19102624 19102857 -143497073 + L1M2 LINE L1 836 1063 -5786 255 133 0 0 chrX 19103099 19103144 -143496786 + (TCC)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chrX 19103577 19103601 -143496329 + GC_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 19104783 19104819 -143495111 + GC_rich Low_complexity Low_complexity 1 36 0 437 0 0 19 chrX 19105780 19105834 -143494096 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 184 331 25 58 chrX 19105952 19106073 -143493857 - L3b LINE CR1 -93 1490 1374 218 254 55 0 chrX 19106379 19106434 -143493496 - MIR3 SINE MIR -13 195 138 2302 73 73 6 chrX 19107055 19107397 -143492533 - L1MA1 LINE L1 0 6302 5938 1545 176 124 21 chrX 19107473 19107803 -143492127 - MLT1A1 LTR MaLR 0 365 2 261 284 114 23 chrX 19107909 19107997 -143491933 + L2 LINE L2 3139 3234 -38 1570 138 69 12 chrX 19108747 19109067 -143490863 - L1MB8 LINE L1 0 6178 5841 207 100 0 0 chrX 19109452 19109482 -143490448 + (TG)n Simple_repeat Simple_repeat 2 31 0 408 287 143 22 chrX 19109531 19109761 -143490169 + MIR SINE MIR 2 259 -3 822 189 20 7 chrX 19109863 19110011 -143489919 + MER5A DNA MER1_type 40 189 0 465 328 62 31 chrX 19110344 19110603 -143489327 + L3 LINE CR1 1084 1350 -227 552 275 84 76 chrX 19110833 19111215 -143488715 + LTR16C LTR ERVL 75 459 -32 521 222 53 41 chrX 19111960 19112131 -143487799 + MER5A DNA MER1_type 3 175 -14 381 273 31 72 chrX 19112149 19112343 -143487587 - MER5A DNA MER1_type -2 187 2 382 277 0 80 chrX 19112357 19112494 -143487436 - L2 LINE L2 0 3272 3147 297 0 0 0 chrX 19114279 19114312 -143485618 + (TG)n Simple_repeat Simple_repeat 1 33 0 4693 145 37 10 chrX 19114326 19115460 -143484470 - L1MB3 LINE L1 -31 6152 4985 1108 145 5 38 chrX 19115460 19115646 -143484284 - AluJb SINE Alu -8 304 125 349 209 0 0 chrX 19115646 19115713 -143484217 - L1MB3 LINE L1 -1171 4975 4909 2683 40 9 0 chrX 19115727 19116054 -143483876 - L1PA4 LINE L1 -5 6150 5821 883 43 0 0 chrX 19116054 19116169 -143483761 + L1P LINE L1 5313 5427 -728 1707 215 33 7 chrX 19116171 19116631 -143483299 - L1MB3 LINE L1 -1227 4919 4448 3177 161 53 28 chrX 19117000 19117367 -143482563 - L1PB4 LINE L1 -3 6153 5760 315 0 0 0 chrX 19117367 19117402 -143482528 + (TA)n Simple_repeat Simple_repeat 1 35 0 3177 161 53 28 chrX 19117402 19117711 -143482219 - L1PB4 LINE L1 -396 5760 5460 693 202 30 10 chrX 19117711 19117909 -143482021 - L1PB4 LINE L1 -1645 4501 4300 23 0 0 0 chrX 19118067 19118090 -143481840 + AT_rich Low_complexity Low_complexity 1 23 0 334 320 45 23 chrX 19118279 19118588 -143481342 - L1ME4a LINE L1 -162 5959 5644 222 297 123 64 chrX 19119737 19119956 -143479974 - L3 LINE CR1 -10 1567 1336 267 224 57 130 chrX 19119992 19120119 -143479811 + L2 LINE L2 2150 2260 -1054 1830 118 42 28 chrX 19120119 19120407 -143479523 - AluSx SINE Alu -16 296 5 267 224 57 130 chrX 19120407 19120471 -143479459 + L2 LINE L2 2260 2327 -987 2224 89 0 3 chrX 19120547 19120838 -143479092 + THE1B LTR MaLR 3 292 -72 23 0 0 0 chrX 19122973 19122996 -143476934 + AT_rich Low_complexity Low_complexity 1 23 0 180 375 69 0 chrX 19123166 19123238 -143476692 + MIR SINE MIR 27 103 -105 384 272 0 39 chrX 19123281 19123384 -143476546 - MIR SINE MIR -4 258 160 200 281 16 16 chrX 19123709 19123773 -143476157 + MIR SINE MIR 184 247 -15 21 36 0 0 chrX 19124459 19124487 -143475443 + AT_rich Low_complexity Low_complexity 1 28 0 1893 161 0 13 chrX 19127941 19128240 -143471690 + AluJo SINE Alu 1 295 -17 24 53 0 0 chrX 19131236 19131274 -143468656 + AT_rich Low_complexity Low_complexity 1 38 0 205 332 180 40 chrX 19131661 19131983 -143467947 + L2 LINE L2 2841 3207 -65 859 169 20 90 chrX 19132099 19132300 -143467630 + MER5A DNA MER1_type 1 187 -2 216 0 0 0 chrX 19132652 19132676 -143467254 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 406 318 41 0 chrX 19132771 19132921 -143467009 + MIR SINE MIR 34 188 -63 191 288 0 0 chrX 19133390 19133449 -143466481 - L3 LINE CR1 -146 1431 1373 661 179 0 0 chrX 19133453 19133559 -143466371 + FLAM_C SINE Alu 3 108 -35 261 296 70 17 chrX 19134037 19134209 -143465721 - L1ME LINE L1 -359 5762 5582 5119 207 53 20 chrX 19135816 19136921 -143463009 - L1MDa LINE L1 -5377 1163 22 491 343 59 11 chrX 19136938 19137287 -143462643 + L2 LINE L2 2702 3069 -203 303 67 33 17 chrX 19137367 19137427 -143462503 + (TA)n Simple_repeat Simple_repeat 1 61 0 24483 43 1 35 chrX 19137615 19140791 -143459139 - L1P LINE L1 -3079 3067 1 9682 180 30 7 chrX 19140783 19141173 -143458757 - L1MA3 LINE L1 -442 6514 6134 * 2274 127 8 8 chrX 19141173 19141528 -143458402 - THE1A LTR MaLR 0 355 1 9682 180 30 7 chrX 19141528 19142705 -143457225 - L1MA3 LINE L1 -822 6134 4871 447 19 0 0 chrX 19142705 19142757 -143457173 + (TG)n Simple_repeat Simple_repeat 2 53 0 9682 180 30 7 chrX 19142757 19143712 -143456218 - L1MA3 LINE L1 -2085 4871 3940 5347 139 32 0 chrX 19143723 19144635 -143455295 - L1PA13 LINE L1 -11 6152 5235 847 92 92 0 chrX 19144635 19144765 -143455165 + MSTA LTR MaLR 1 142 -286 8728 170 13 7 chrX 19144766 19144911 -143455019 - L1PA13 LINE L1 -1107 5039 4896 6624 113 31 18 chrX 19144911 19145968 -143453962 - MER11C LTR ERVK 0 1071 1 8728 170 13 7 chrX 19145968 19147480 -143452450 - L1PA13 LINE L1 -1250 4896 3371 3078 222 12 1 chrX 19147582 19148349 -143451581 - L1PA13 LINE L1 -3068 3078 2304 7801 47 0 0 chrX 19148363 19149345 -143450585 + L1P LINE L1 958 1939 -4207 677 329 20 14 chrX 19149445 19149940 -143449990 + L1P LINE L1 1585 2082 -4064 11021 200 68 10 chrX 19149940 19152586 -143447344 - L1MA3 LINE L1 -3826 2971 165 4557 197 39 17 chrX 19152583 19153812 -143446118 - L1 LINE L1 -2839 4726 3458 * 378 0 0 0 chrX 19153812 19153854 -143446076 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 4557 197 39 17 chrX 19153854 19153977 -143445953 - L1 LINE L1 -4107 3458 3339 476 206 20 20 chrX 19153973 19154075 -143445855 + L1MCa LINE L1 510 611 -5815 * 4223 230 77 20 chrX 19154085 19156363 -143443567 + L1MCb LINE L1 500 2973 -3591 1945 259 31 7 chrX 19156373 19156983 -143442947 + L1M4 LINE L1 4518 5142 -1004 18028 35 5 2 chrX 19157087 19160038 -143439892 + L1PA3 LINE L1 3196 6152 -3 2607 126 22 7 chrX 19160045 19160504 -143439426 + L1MA3 LINE L1 5840 6305 0 1113 275 85 23 chrX 19160517 19160990 -143438940 - L1MCa LINE L1 -5899 527 26 2928 227 59 21 chrX 19161024 19161476 -143438454 - L1MDa LINE L1 -3946 2594 2161 1887 138 0 24 chrX 19161476 19161792 -143438138 + AluSx SINE Alu 1 309 0 2928 227 59 21 chrX 19161792 19162298 -143437632 - L1MDa LINE L1 -4379 2161 1598 21844 172 28 29 chrX 19162327 19163057 -143436873 + L1PA11 LINE L1 7 737 -6875 1818 131 4 4 chrX 19163057 19163317 -143436613 - AluSc SINE Alu -49 260 1 21844 172 28 29 chrX 19163317 19166131 -143433799 + L1PA11 LINE L1 737 3554 -4058 315 0 0 0 chrX 19166131 19166166 -143433764 + (CA)n Simple_repeat Simple_repeat 2 36 0 21844 172 28 29 chrX 19166166 19168659 -143431271 + L1PA11 LINE L1 3554 7124 -488 2116 122 0 0 chrX 19168659 19168954 -143430976 + AluSx SINE Alu 3 297 -15 21844 172 28 29 chrX 19168954 19169443 -143430487 + L1PA11 LINE L1 7124 7612 0 692 213 147 58 chrX 19169446 19169671 -143430259 - MER76 LTR ERV -443 245 1 1881 210 40 38 chrX 19169720 19170317 -143429613 - L1MDa LINE L1 -4987 1556 992 348 336 126 78 chrX 19170340 19171122 -143428808 - L1MDa LINE L1 -5551 989 476 1002 268 32 42 chrX 19171162 19171565 -143428365 - L1MDa LINE L1 -6128 412 14 6054 62 5 14 chrX 19171620 19172176 -143427754 - L1PA8 LINE L1 -136 6036 5490 2288 91 3 7 chrX 19172176 19172484 -143427446 - AluSc SINE Alu -2 307 1 6054 62 5 14 chrX 19172484 19172796 -143427134 - L1PA8 LINE L1 -682 5490 5177 * 6230 88 2 79 chrX 19172795 19173842 -143426088 + L1PA8 LINE L1 4215 5180 -966 271 256 124 73 chrX 19174069 19174303 -143425627 + MARNA DNA Mariner 133 378 -208 245 298 106 19 chrX 19174391 19174495 -143425435 - MIR SINE MIR -70 192 80 22 0 0 0 chrX 19175833 19175855 -143424075 + AT_rich Low_complexity Low_complexity 1 22 0 1730 152 9 67 chrX 19175855 19176171 -143423759 + AluJo SINE Alu 1 298 -14 2010 173 116 8 chrX 19176552 19177109 -143422821 - L1MDa LINE L1 -3890 2650 2173 1815 144 14 7 chrX 19178995 19179279 -143420651 + AluJo SINE Alu 6 291 -21 21 0 0 0 chrX 19187774 19187795 -143412135 + AT_rich Low_complexity Low_complexity 1 21 0 310 41 20 20 chrX 19188669 19188718 -143411212 + (TTG)n Simple_repeat Simple_repeat 2 50 0 24 53 0 0 chrX 19189049 19189087 -143410843 + AT_rich Low_complexity Low_complexity 1 38 0 231 146 0 0 chrX 19191567 19191608 -143408322 + (CA)n Simple_repeat Simple_repeat 2 42 0 353 286 26 71 chrX 19193442 19193596 -143406334 + MIR SINE MIR 4 150 -112 195 184 0 0 chrX 19195230 19195268 -143404662 - L2 LINE L2 0 3313 3276 15262 179 32 17 chrX 19195688 19200412 -143399518 - L1MA5 LINE L1 -10 6992 2159 1797 223 58 63 chrX 19200412 19200969 -143398961 - MLT2B3 LTR ERVL 0 554 1 15262 179 32 17 chrX 19200969 19201657 -143398273 - L1MA5 LINE L1 -4843 2159 1483 22 35 0 0 chrX 19201809 19201838 -143398092 + AT_rich Low_complexity Low_complexity 1 29 0 2356 72 0 3 chrX 19202878 19203170 -143396760 - AluSc SINE Alu -18 291 1 995 208 40 0 chrX 19203348 19203550 -143396380 + MER6B DNA MER2_type 1 210 0 846 224 78 41 chrX 19203551 19203770 -143396160 - MIR SINE MIR -10 252 32 469 256 143 25 chrX 19204116 19204319 -143395611 + MIR SINE MIR 2 228 -34 635 266 58 34 chrX 19205489 19205696 -143394234 + MIR SINE MIR 13 224 -38 1238 133 0 0 chrX 19205699 19205879 -143394051 - AluSg/x SINE Alu 0 309 130 24 0 0 0 chrX 19206345 19206369 -143393561 + AT_rich Low_complexity Low_complexity 1 24 0 31522 86 10 17 chrX 19206476 19212638 -143387292 + L1PA7 LINE L1 1 6134 -335 1916 131 21 3 chrX 19212638 19212929 -143387001 + AluSx SINE Alu 2 297 -15 31522 86 10 17 chrX 19212929 19213262 -143386668 + L1PA7 LINE L1 6134 6468 -1 955 178 112 0 chrX 19213464 19213661 -143386269 + MER20 DNA MER1_type 1 219 0 281 270 131 7 chrX 19214140 19214277 -143385653 - MER103 DNA DNA -1 165 12 239 349 177 17 chrX 19214693 19214925 -143385005 + L3 LINE CR1 120 388 -1189 5951 87 10 22 chrX 19216219 19217085 -143382845 - L1PA13 LINE L1 -4 6159 5304 240 281 0 16 chrX 19217946 19218010 -143381920 + GA-rich Low_complexity Low_complexity 3 65 0 465 350 62 15 chrX 19218107 19218381 -143381549 - L2 LINE L2 -22 3291 3005 1808 224 45 23 chrX 19218406 19218893 -143381037 - L2 LINE L2 -1264 2050 1553 25 51 0 0 chrX 19220244 19220283 -143379647 + AT_rich Low_complexity Low_complexity 1 39 0 3884 108 36 0 chrX 19221023 19221600 -143378330 - LTR43 LTR ERV1 -4 598 1 758 215 252 28 chrX 19221898 19222219 -143377711 - L2 LINE L2 -2263 1051 659 640 260 98 20 chrX 19222218 19222422 -143377508 + MIR SINE MIR 42 261 -1 * 265 241 0 0 chrX 19222479 19222533 -143377397 - L2 LINE L2 -5 3308 3255 21 0 0 0 chrX 19223062 19223083 -143376847 + AT_rich Low_complexity Low_complexity 1 21 0 225 238 0 48 chrX 19224785 19224848 -143375082 - MER5A DNA MER1_type -123 66 7 576 88 0 0 chrX 19224964 19225044 -143374886 - MADE1 DNA Mariner 0 80 1 379 239 184 18 chrX 19227265 19227374 -143372556 + L1ME LINE L1 5541 5667 -454 363 293 102 81 chrX 19228916 19229288 -143370642 + L2 LINE L2 2934 3313 0 428 0 19 0 chrX 19229672 19229724 -143370206 + (TG)n Simple_repeat Simple_repeat 2 54 0 1887 160 0 0 chrX 19229888 19230176 -143369754 + AluJb SINE Alu 1 288 -24 24 32 0 0 chrX 19230514 19230545 -143369385 + AT_rich Low_complexity Low_complexity 1 31 0 486 247 139 30 chrX 19230571 19230737 -143369193 - MIR SINE MIR -43 219 36 11196 108 170 3 chrX 19230858 19231093 -143368837 - Tigger1 DNA MER2_type 0 2418 2224 207 0 0 0 chrX 19231093 19231116 -143368814 + (TTA)n Simple_repeat Simple_repeat 2 24 0 11196 108 170 3 chrX 19231116 19232718 -143367212 - Tigger1 DNA MER2_type -194 2224 274 1431 58 0 5 chrX 19232714 19232902 -143367028 - Tigger1 DNA MER2_type -1562 856 670 * 990 62 0 0 chrX 19232915 19233043 -143366887 - Tigger1 DNA MER2_type -1335 1083 956 1607 143 23 0 chrX 19233044 19233309 -143366621 - Tigger1 DNA MER2_type -2146 272 2 568 307 119 14 chrX 19233334 19233552 -143366378 - MIR SINE MIR -2 260 20 2521 109 13 13 chrX 19234330 19234705 -143365225 - THE1C LTR MaLR 0 375 1 11025 96 30 1 chrX 19234705 19236240 -143363690 - THE1C-int LTR MaLR 0 1580 1 2425 116 33 0 chrX 19236240 19236603 -143363327 - THE1C LTR MaLR 0 375 1 21 0 0 0 chrX 19237205 19237226 -143362704 + AT_rich Low_complexity Low_complexity 1 21 0 878 264 96 41 chrX 19237357 19237744 -143362186 + L1MEc LINE L1 17 424 -6116 2821 234 118 12 chrX 19237746 19238725 -143361205 + L1M4 LINE L1 2407 3488 -2658 24 53 0 0 chrX 19239253 19239291 -143360639 + AT_rich Low_complexity Low_complexity 1 38 0 222 344 16 8 chrX 19240378 19240506 -143359424 + MIR SINE MIR 107 235 -27 1119 278 150 22 chrX 19240732 19241178 -143358752 - MLT2F LTR ERVL -158 505 3 21 0 0 0 chrX 19242076 19242097 -143357833 + AT_rich Low_complexity Low_complexity 1 21 0 462 295 14 14 chrX 19243148 19243287 -143356643 - MIR3 SINE MIR -43 165 27 799 227 37 28 chrX 19243336 19243552 -143356378 - L2 LINE L2 -609 2705 2488 315 255 157 0 chrX 19243612 19243714 -143356216 - L2 LINE L2 0 3313 3196 652 219 57 72 chrX 19244372 19244637 -143355293 + MIR SINE MIR 2 262 0 1976 251 46 97 chrX 19246221 19246843 -143353087 - L2 LINE L2 0 3313 2776 1838 153 10 3 chrX 19246843 19247131 -143352799 + AluJb SINE Alu 1 290 -22 1976 251 46 97 chrX 19247131 19247551 -143352379 - L2 LINE L2 -537 2776 2336 326 265 152 39 chrX 19248600 19248830 -143351100 + L1MEc LINE L1 1300 1555 -4975 517 252 126 35 chrX 19248897 19249221 -143350709 + L1MEc LINE L1 1726 2043 -860 1712 228 62 39 chrX 19249697 19250242 -143349688 - MER68 LTR ERV1 -4 558 1 23 33 0 0 chrX 19250368 19250398 -143349532 + AT_rich Low_complexity Low_complexity 1 30 0 773 314 216 9 chrX 19251491 19252033 -143347897 - L2 LINE L2 -2078 1236 583 441 223 128 34 chrX 19254040 19254179 -143345751 + MIR SINE MIR 98 255 -7 1916 123 47 0 chrX 19254180 19254456 -143345474 + AluJb SINE Alu 1 289 -23 22 56 0 0 chrX 19255028 19255064 -143344866 + AT_rich Low_complexity Low_complexity 1 36 0 4517 111 8 1 chrX 19255704 19256364 -143343566 + L1PA14 LINE L1 5494 6157 -4 478 266 69 26 chrX 19257994 19258178 -143341752 + MIR SINE MIR 2 191 -17 * 665 270 35 15 chrX 19258161 19258361 -143341569 + MIR SINE MIR 57 260 -2 25 0 0 0 chrX 19259373 19259398 -143340532 + AT_rich Low_complexity Low_complexity 1 25 0 38 61 0 0 chrX 19259666 19259732 -143340198 + AT_rich Low_complexity Low_complexity 1 66 0 248 238 0 12 chrX 19259884 19259964 -143339966 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 530 240 114 65 chrX 19260494 19260740 -143339190 + L2 LINE L2 3048 3305 -8 357 302 52 10 chrX 19261022 19261118 -143338812 + L2 LINE L2 3168 3267 -5 2107 101 7 7 chrX 19261206 19261221 -143338709 - AluSx SINE Alu -16 296 282 405 0 0 0 chrX 19261221 19261266 -143338664 + (TG)n Simple_repeat Simple_repeat 1 45 0 2107 101 7 7 chrX 19261266 19261546 -143338384 - AluSx SINE Alu -29 283 1 258 56 0 0 chrX 19264003 19264039 -143335891 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1464 145 24 79 chrX 19264046 19264336 -143335594 - AluJb SINE Alu -38 274 1 321 231 62 0 chrX 19264437 19264502 -143335428 - MER58 DNA MER1_type 0 2420 2352 1792 37 0 0 chrX 19266136 19266353 -143333577 + L1PA5 LINE L1 5931 6147 -7 597 276 80 36 chrX 19266877 19267102 -143332828 - MIR SINE MIR -8 254 20 276 274 150 9 chrX 19269290 19269403 -143330527 - MER94 DNA DNA 0 134 6 2193 95 0 0 chrX 19269403 19269709 -143330221 + AluSx SINE Alu 1 306 0 291 93 0 0 chrX 19271429 19271472 -143328458 + (GGA)n Simple_repeat Simple_repeat 2 44 0 2192 107 7 0 chrX 19275551 19275850 -143324080 + AluSx SINE Alu 12 312 0 215 59 0 29 chrX 19275876 19275910 -143324020 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 255 270 101 0 chrX 19276622 19276711 -143323219 - MLT1L LTR MaLR -52 563 466 537 304 72 13 chrX 19276742 19276979 -143322951 - MLT1L LTR MaLR -250 365 115 644 267 42 50 chrX 19277269 19277509 -143322421 + MIR SINE MIR 15 252 -10 375 192 26 0 chrX 19277698 19277776 -143322154 - MER116 DNA Mariner 0 80 1 561 282 92 34 chrX 19277951 19278213 -143321717 + L2 LINE L2 3005 3281 -32 189 74 0 0 chrX 19278225 19278252 -143321678 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chrX 19280883 19280906 -143319024 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 19281494 19281516 -143318414 + AT_rich Low_complexity Low_complexity 1 22 0 428 324 104 23 chrX 19282339 19282598 -143317332 - L3 LINE CR1 -6 1571 1292 * 586 327 178 7 chrX 19282594 19282869 -143317061 + L3 LINE CR1 1253 1574 -3 662 313 167 43 chrX 19283006 19283717 -143316213 - L3 LINE CR1 -404 1173 324 21 0 0 0 chrX 19284720 19284741 -143315189 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chrX 19285709 19285745 -143314185 + AT_rich Low_complexity Low_complexity 1 36 0 812 102 0 0 chrX 19286380 19286498 -143313432 - AluSx SINE Alu -1 309 192 870 112 104 0 chrX 19286499 19286624 -143313306 - AluSx SINE Alu -171 141 4 24 32 0 0 chrX 19287390 19287421 -143312509 + AT_rich Low_complexity Low_complexity 1 31 0 245 313 121 20 chrX 19288025 19288124 -143311806 - L2 LINE L2 -210 3062 2954 207 0 0 0 chrX 19288125 19288148 -143311782 + (A)n Simple_repeat Simple_repeat 1 23 0 272 304 56 40 chrX 19288328 19288453 -143311477 - L2 LINE L2 -618 2696 2570 1775 123 57 65 chrX 19289049 19289091 -143310839 - THE1B LTR MaLR 0 364 323 2294 71 0 24 chrX 19289091 19289388 -143310542 + AluY SINE Alu 1 290 -21 1775 123 57 65 chrX 19289388 19289712 -143310218 - THE1B LTR MaLR -41 323 1 25 31 0 0 chrX 19290128 19290160 -143309770 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chrX 19290305 19290334 -143309596 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 19290935 19290956 -143308974 + AT_rich Low_complexity Low_complexity 1 21 0 366 281 70 76 chrX 19291704 19291875 -143308055 - MIR3 SINE MIR -1 207 38 275 368 116 12 chrX 19292078 19292336 -143307594 + L2 LINE L2 2988 3272 0 504 268 6 32 chrX 19292930 19293109 -143306821 - MIR SINE MIR -66 196 25 560 218 89 50 chrX 19293113 19293292 -143306638 - MER5A DNA MER1_type -2 187 2 23 0 0 0 chrX 19294570 19294593 -143305337 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chrX 19294733 19294760 -143305170 + AT_rich Low_complexity Low_complexity 1 27 0 2142 169 0 0 chrX 19295355 19295703 -143304227 + MER7A DNA MER2_type 1 346 0 1246 231 16 13 chrX 19295747 19296059 -143303871 - AluSq SINE Alu 0 313 1 2321 99 3 0 chrX 19296235 19296547 -143303383 - AluSq SINE Alu 0 313 1 839 234 140 9 chrX 19296656 19296878 -143303052 - MIR SINE MIR -4 258 8 3966 99 32 3 chrX 19297097 19297682 -143302248 + LTR43 LTR ERV1 1 602 0 237 327 58 0 chrX 19299930 19300034 -143299896 - MIR3 SINE MIR -6 202 93 24 32 0 0 chrX 19300910 19300941 -143298989 + AT_rich Low_complexity Low_complexity 1 31 0 213 109 65 0 chrX 19301066 19301112 -143298818 + A-rich Low_complexity Low_complexity 2 50 0 190 191 0 21 chrX 19302261 19302308 -143297622 + L2 LINE L2 3267 3312 -1 4636 73 2 2 chrX 19302714 19303314 -143296616 - MER4A LTR ERV1 0 600 1 394 316 61 40 chrX 19303548 19303776 -143296154 + MIR SINE MIR 20 252 -10 780 193 112 6 chrX 19304059 19304220 -143295710 + MER45A DNA AcHobo 1 178 0 200 294 165 12 chrX 19304854 19304939 -143294991 - L2 LINE L2 -20 3252 3155 29 0 0 0 chrX 19305255 19305284 -143294646 + AT_rich Low_complexity Low_complexity 1 29 0 449 254 189 6 chrX 19305391 19305560 -143294370 - MIR SINE MIR -13 249 50 1860 108 48 0 chrX 19305925 19306194 -143293736 - AluSx SINE Alu -30 282 1 22 56 0 0 chrX 19306201 19306237 -143293693 + AT_rich Low_complexity Low_complexity 1 36 0 255 170 0 0 chrX 19306567 19306614 -143293316 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2189 94 0 3 chrX 19306859 19307146 -143292784 - AluSg SINE Alu -24 286 1 26 50 0 0 chrX 19307656 19307696 -143292234 + AT_rich Low_complexity Low_complexity 1 40 0 361 0 0 0 chrX 19307718 19307758 -143292172 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1981 129 0 4 chrX 19307758 19308038 -143291892 - AluSg SINE Alu -1 318 1 22 35 0 0 chrX 19308365 19308394 -143291536 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chrX 19308431 19308454 -143291476 + (TA)n Simple_repeat Simple_repeat 2 24 0 3544 49 0 53 chrX 19308454 19308935 -143290995 - L1PA5 LINE L1 -8 6146 5690 23 0 0 0 chrX 19309041 19309064 -143290866 + AT_rich Low_complexity Low_complexity 1 23 0 261 303 174 32 chrX 19309581 19309736 -143290194 - MIR3 SINE MIR -11 197 21 2146 175 101 93 chrX 19309951 19310598 -143289332 - MLT1E1 LTR MaLR 0 654 3 606 242 124 17 chrX 19310704 19310882 -143289048 + MIR SINE MIR 2 198 -64 * 1106 253 12 4 chrX 19310875 19311128 -143288802 - MIR SINE MIR 0 262 8 688 223 81 14 chrX 19311845 19312071 -143287859 + LTR41 LTR ERVL 1 259 -536 324 204 48 39 chrX 19312423 19312526 -143287404 + LTR41 LTR ERVL 655 758 -15 2379 164 40 49 chrX 19312584 19313139 -143286791 + L1PB4 LINE L1 5601 6150 -6 229 345 12 24 chrX 19313328 19313412 -143286518 - MIR3 SINE MIR -123 85 3 203 173 19 39 chrX 19314607 19314659 -143285271 + A-rich Low_complexity Low_complexity 4 54 0 1208 115 139 10 chrX 19316060 19316269 -143283661 + MER46A DNA MER2_type 1 236 0 1528 116 4 24 chrX 19316713 19316964 -143282966 - L1MA3 LINE L1 -13 6292 6047 491 330 91 41 chrX 19317476 19317794 -143282136 + LTR16C LTR ERVL 156 489 -2 2458 59 0 10 chrX 19318001 19318304 -143281626 + AluY SINE Alu 1 300 -11 318 264 132 52 chrX 19318404 19318578 -143281352 - MIR SINE MIR -64 198 11 42 48 0 0 chrX 19319023 19319086 -143280844 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chrX 19319188 19319212 -143280718 + AT_rich Low_complexity Low_complexity 1 24 0 180 316 13 13 chrX 19320082 19320158 -143279772 + MIR SINE MIR 180 255 -7 22 0 0 0 chrX 19320987 19321009 -143278921 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrX 19321331 19321373 -143278557 + AT_rich Low_complexity Low_complexity 1 42 0 319 288 72 46 chrX 19321955 19322108 -143277822 + MIR SINE MIR 106 262 0 2221 99 7 3 chrX 19322118 19322421 -143277509 - AluSp SINE Alu -9 304 1 24 0 0 0 chrX 19322457 19322481 -143277449 + AT_rich Low_complexity Low_complexity 1 24 0 820 234 68 112 chrX 19323294 19323717 -143276213 + L1MC4 LINE L1 6645 7038 -957 23 54 0 0 chrX 19323756 19323793 -143276137 + AT_rich Low_complexity Low_complexity 1 37 0 33 25 0 0 chrX 19324030 19324070 -143275860 + AT_rich Low_complexity Low_complexity 1 40 0 37 81 0 0 chrX 19324341 19324427 -143275503 + AT_rich Low_complexity Low_complexity 1 86 0 263 300 118 64 chrX 19324691 19324801 -143275129 - MER5A DNA MER1_type -1 188 73 2292 114 0 0 chrX 19325165 19325471 -143274459 + AluSx SINE Alu 1 306 -6 225 261 0 0 chrX 19326630 19326676 -143273254 + polypyrimidine Low_complexity Low_complexity 3 48 0 4519 193 17 20 chrX 19327550 19328440 -143271490 + L1MA2 LINE L1 65 951 -6614 10506 145 22 13 chrX 19328443 19329044 -143270886 + L1MA2 LINE L1 4784 5378 -2345 2120 93 24 7 chrX 19329044 19329335 -143270595 + AluSc SINE Alu 1 296 -13 10506 145 22 13 chrX 19329335 19331638 -143268292 + L1MA2 LINE L1 5378 7717 -6 191 275 62 0 chrX 19331674 19331754 -143268176 - L2 LINE L2 -833 2481 2397 2205 108 0 7 chrX 19332726 19333031 -143266899 + AluSx SINE Alu 1 303 -9 1806 93 36 4 chrX 19333162 19333441 -143266489 + L1PA13 LINE L1 5875 6162 -1 920 185 38 52 chrX 19333691 19333902 -143266028 + MER3 DNA MER1_type 2 209 0 5938 146 17 25 chrX 19334787 19335996 -143263934 + L1MA9 LINE L1 5111 6312 0 21 0 0 0 chrX 19336695 19336716 -143263214 + AT_rich Low_complexity Low_complexity 1 21 0 358 372 58 6 chrX 19337084 19337256 -143262674 + MIR SINE MIR 32 212 -50 420 316 93 0 chrX 19337483 19337622 -143262308 - L2 LINE L2 0 3272 3121 2248 118 120 5 chrX 19338016 19338399 -143261531 + MSTA LTR MaLR 2 428 0 210 333 34 41 chrX 19338476 19338623 -143261307 - L2 LINE L2 -452 2862 2717 603 0 0 0 chrX 19339229 19339296 -143260634 + (TAAAA)n Simple_repeat Simple_repeat 2 68 0 2126 99 0 11 chrX 19339658 19339940 -143259990 + AluSg SINE Alu 1 279 -31 210 37 0 0 chrX 19339956 19339983 -143259947 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4727 32 0 0 chrX 19340191 19340747 -143259183 - L1PA3 LINE L1 -3 6152 5597 185 62 0 31 chrX 19341962 19341994 -143257936 + (CA)n Simple_repeat Simple_repeat 1 31 0 1510 250 18 9 chrX 19342155 19342491 -143257439 + MLT1I LTR MaLR 71 409 0 2287 97 3 0 chrX 19342725 19343025 -143256905 - AluSx SINE Alu -11 301 1 309 87 0 0 chrX 19343294 19343340 -143256590 - MADE1 DNA Mariner 0 80 35 344 85 0 0 chrX 19343414 19343461 -143256469 - MADE1 DNA Mariner -33 47 1 189 287 38 96 chrX 19343836 19343993 -143255937 - MER5A DNA MER1_type -41 148 1 496 294 13 20 chrX 19344056 19344209 -143255721 - MER5B DNA MER1_type 0 178 27 229 244 39 51 chrX 19344500 19344578 -143255352 + MIR SINE MIR 107 183 -79 243 229 0 0 chrX 19344708 19344756 -143255174 + L1ME1 LINE L1 5594 5641 -529 358 226 46 56 chrX 19344781 19344982 -143254948 + L1ME1 LINE L1 5739 5951 -219 4786 127 17 1 chrX 19345985 19346742 -143253188 + L1MA5 LINE L1 5532 6300 0 415 304 123 26 chrX 19347438 19347665 -143252265 - MIR SINE MIR -12 250 2 22 70 0 0 chrX 19348094 19348137 -143251793 + AT_rich Low_complexity Low_complexity 1 43 0 208 26 26 53 chrX 19348869 19348907 -143251023 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2861 104 27 5 chrX 19348907 19349333 -143250597 - L1PA15 LINE L1 -26 6139 5706 313 204 62 93 chrX 19350516 19350678 -143249252 - L1ME4a LINE L1 -1 6120 5964 259 286 13 0 chrX 19350890 19350967 -143248963 + Charlie8 DNA MER1_type 2340 2417 0 1020 218 10 15 chrX 19351748 19351950 -143247980 - MIR SINE MIR 0 262 62 1072 225 131 74 chrX 19351982 19353139 -143246791 - L1M4 LINE L1 -2343 3803 2445 2023 103 28 7 chrX 19353649 19353940 -143245990 + MER7A DNA MER2_type 1 295 -51 383 239 8 31 chrX 19354178 19354308 -143245622 + L1ME1 LINE L1 6037 6163 -3 2052 80 8 0 chrX 19354365 19354628 -143245302 + AluSg SINE Alu 36 300 -10 207 0 0 0 chrX 19354806 19354829 -143245101 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chrX 19355329 19355352 -143244578 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 266 196 304 29 chrX 19357086 19357188 -143242742 + MIR SINE MIR 75 204 -58 21 36 0 0 chrX 19358040 19358068 -143241862 + AT_rich Low_complexity Low_complexity 1 28 0 378 0 0 0 chrX 19358352 19358394 -143241536 + (TG)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chrX 19358930 19358965 -143240965 + AT_rich Low_complexity Low_complexity 1 35 0 386 271 68 17 chrX 19359476 19359594 -143240336 - L2 LINE L2 -1 3271 3148 1853 166 7 0 chrX 19362125 19362426 -143237504 - AluJo SINE Alu -9 303 1 21 36 0 0 chrX 19363398 19363426 -143236504 + AT_rich Low_complexity Low_complexity 1 28 0 212 434 24 0 chrX 19363815 19363981 -143235949 - L2 LINE L2 -1 3271 3102 404 358 128 23 chrX 19363984 19364336 -143235594 + L2 LINE L2 2836 3224 -48 289 343 198 24 chrX 19366747 19366995 -143232935 - L2 LINE L2 -1368 1946 1656 218 304 0 0 chrX 19367298 19367354 -143232576 - L2 LINE L2 -36 3236 3181 905 168 7 0 chrX 19367371 19367520 -143232410 - MER2 DNA MER2_type -174 171 22 302 306 81 32 chrX 19367895 19368019 -143231911 - MIR SINE MIR -102 160 31 425 293 95 7 chrX 19368656 19368803 -143231127 - MIR SINE MIR -94 168 9 505 183 16 24 chrX 19369177 19369303 -143230627 - L1MA7 LINE L1 -10 6281 6157 998 205 2 3 chrX 19370322 19370552 -143229378 + L1MB3 LINE L1 5551 5779 -372 19297 158 32 70 chrX 19370556 19374196 -143225734 + L1MA2 LINE L1 16 3795 -3928 189 0 0 0 chrX 19374196 19374217 -143225713 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 19297 158 32 70 chrX 19374217 19376389 -143223541 + L1MA2 LINE L1 3795 6049 -1674 357 109 0 0 chrX 19376389 19376444 -143223486 + (TG)n Simple_repeat Simple_repeat 2 56 0 19297 158 32 70 chrX 19376444 19376475 -143223455 + L1MA2 LINE L1 6049 6080 -1643 1651 16 0 0 chrX 19376475 19376665 -143223265 - L1PA5 LINE L1 -12 6142 5953 19297 158 32 70 chrX 19376665 19378228 -143221702 + L1MA2 LINE L1 6080 7110 -613 566 113 9 26 chrX 19378246 19378361 -143221569 - L1 LINE L1 -1465 4681 4569 3534 94 54 35 chrX 19378361 19378951 -143220979 + L1MA2 LINE L1 7116 7723 0 1972 133 29 46 chrX 19378960 19379375 -143220555 + L1MB3 LINE L1 5774 6181 -2 358 96 0 68 chrX 19379375 19379429 -143220501 + L1MB4 LINE L1 6112 6179 -1 475 313 97 57 chrX 19380300 19380725 -143219205 - L2 LINE L2 0 3313 2872 294 50 0 0 chrX 19381345 19381385 -143218545 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chrX 19381444 19381471 -143218459 + (CA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chrX 19381909 19381938 -143217992 + AT_rich Low_complexity Low_complexity 1 29 0 300 274 230 0 chrX 19381976 19382089 -143217841 - MER5A DNA MER1_type 0 189 51 318 26 0 0 chrX 19382196 19382235 -143217695 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 191 0 0 chrX 19383299 19383346 -143216584 + (TA)n Simple_repeat Simple_repeat 1 47 0 189 0 0 0 chrX 19383957 19383978 -143215952 + (GAGTG)n Simple_repeat Simple_repeat 3 23 0 1883 174 9 9 chrX 19386225 19386559 -143213371 - MER1B DNA MER1_type 0 337 4 36 23 0 0 chrX 19386709 19386752 -143213178 + AT_rich Low_complexity Low_complexity 1 43 0 737 280 70 36 chrX 19387010 19387599 -143212331 + L1M4 LINE L1 4233 4841 -1305 371 359 36 42 chrX 19387635 19387758 -143212172 + L1M4 LINE L1 4853 4975 -1171 2170 128 0 0 chrX 19387758 19388064 -143211866 - AluSq SINE Alu -7 306 1 371 359 36 42 chrX 19388064 19388274 -143211656 + L1M4 LINE L1 4975 5184 -962 419 289 35 18 chrX 19388649 19388763 -143211167 + L2 LINE L2 3197 3312 -1 229 271 0 0 chrX 19388769 19388817 -143211113 + L2 LINE L2 3265 3312 -1 1876 101 236 19 chrX 19388851 19389219 -143210711 - L1PA16 LINE L1 0 6166 5719 * 3263 182 37 3 chrX 19389218 19389898 -143210032 - L1 LINE L1 -1306 4840 4138 228 303 79 13 chrX 19390072 19390148 -143209782 + L2 LINE L2 3208 3288 -25 450 36 0 0 chrX 19390881 19390937 -143208993 + (CTG)n Simple_repeat Simple_repeat 1 56 0 314 211 105 76 chrX 19391080 19391251 -143208679 - LTR40a LTR ERVL -42 477 302 * 849 262 78 29 chrX 19391111 19391576 -143208354 - REP3 LTR ERV -47 515 1 712 313 189 45 chrX 19391933 19392720 -143207210 + L2 LINE L2 1932 2832 -482 22 0 0 0 chrX 19394855 19394877 -143205053 + AT_rich Low_complexity Low_complexity 1 22 0 454 321 11 0 chrX 19396895 19397079 -143202851 - L1M4 LINE L1 -1250 4896 4711 26 30 0 0 chrX 19397240 19397273 -143202657 + AT_rich Low_complexity Low_complexity 1 33 0 30 59 0 0 chrX 19397523 19397574 -143202356 + AT_rich Low_complexity Low_complexity 1 51 0 229 291 241 22 chrX 19397851 19398059 -143201871 + MIR SINE MIR 10 262 0 231 216 98 0 chrX 19399357 19399408 -143200522 - L2 LINE L2 0 3313 3258 713 319 39 12 chrX 19399861 19400115 -143199815 - MIR SINE MIR 0 262 2 2508 83 18 33 chrX 19401991 19402389 -143197541 - L1MA5 LINE L1 -5 6295 5904 277 362 19 0 chrX 19403066 19403171 -143196759 + MIR3 SINE MIR 62 168 -40 4282 161 52 32 chrX 19403365 19403566 -143196364 + L1MC2 LINE L1 5060 5255 -1089 1884 121 32 3 chrX 19403566 19403887 -143196043 + AluSx SINE Alu 1 312 0 4282 161 52 32 chrX 19403887 19403939 -143195991 + L1MC2 LINE L1 5255 5304 -1040 1778 170 10 6 chrX 19403939 19404250 -143195680 + AluSx SINE Alu 1 312 0 4282 161 52 32 chrX 19404250 19404996 -143194934 + L1MC2 LINE L1 5304 6079 -265 960 215 62 29 chrX 19404999 19405472 -143194458 + L1MC/D LINE L1 4986 5478 -743 340 273 62 12 chrX 19405469 19405630 -143194300 + L1M4 LINE L1 3283 3451 -2695 * 2820 235 45 28 chrX 19405640 19406498 -143193432 + L1M4 LINE L1 3612 4484 -1662 2124 127 41 36 chrX 19406506 19406868 -143193062 + THE1B LTR MaLR 1 364 0 11313 98 11 1 chrX 19406868 19408431 -143191499 + THE1B-int LTR MaLR 1 1580 0 1139 199 14 9 chrX 19408431 19408642 -143191288 + THE1B LTR MaLR 1 212 -163 483 349 198 8 chrX 19408667 19409031 -143190899 + L2 LINE L2 2839 3271 -1 250 304 39 0 chrX 19410786 19410888 -143189042 - LTR33A LTR ERVL 0 523 418 1613 304 99 17 chrX 19410981 19411689 -143188241 - ERVL LTR ERVL -342 5422 4657 892 236 15 0 chrX 19411738 19411937 -143187993 - MLT1E2 LTR MaLR -2 624 423 1530 17 6 0 chrX 19411939 19412117 -143187813 - L1PA3 LINE L1 0 6155 5977 1613 6 0 0 chrX 19412117 19412297 -143187633 + L1P1 LINE L1 5417 5596 -559 1104 244 90 24 chrX 19412297 19412730 -143187200 - MLT1E2 LTR MaLR -174 450 1 1420 232 54 12 chrX 19412731 19413063 -143186867 - ERVL LTR ERVL -1335 4429 4084 1188 264 17 17 chrX 19413090 19413435 -143186495 - ERVL LTR ERVL -1711 3943 3599 2223 267 98 19 chrX 19413466 19414110 -143185820 - ERVL LTR ERVL -2190 3574 2880 2122 151 48 32 chrX 19414255 19414752 -143185178 - MLT2A2 LTR ERVL 0 515 1 233 293 146 0 chrX 19414790 19414872 -143185058 - LTR50 LTR ERVL -694 101 8 928 301 85 19 chrX 19415332 19415708 -143184222 - MLT1I LTR MaLR -5 404 4 233 226 71 84 chrX 19416679 19416891 -143183039 - MIR SINE MIR -18 244 45 28 0 0 0 chrX 19417068 19417096 -143182834 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chrX 19417167 19417199 -143182731 + AT_rich Low_complexity Low_complexity 1 32 0 335 274 35 0 chrX 19418960 19419073 -143180857 + L1ME3A LINE L1 5749 5865 -305 520 210 102 27 chrX 19419290 19419476 -143180454 + LTR33A LTR ERVL 324 523 0 1093 236 55 31 chrX 19419532 19419948 -143179982 - HsTC2 DNA Tc2 -4 1894 1469 507 274 61 0 chrX 19420046 19420210 -143179720 - HsTC2 DNA Tc2 -453 1445 1272 383 333 14 0 chrX 19420214 19420355 -143179575 - HsTC2 DNA Tc2 -1751 147 5 694 261 66 40 chrX 19420380 19420606 -143179324 - L1MEd LINE L1 -5447 672 441 243 0 0 0 chrX 19421040 19421067 -143178863 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 230 266 0 43 chrX 19422216 19422310 -143177620 - L1MC4 LINE L1 -1339 6703 6614 290 299 0 11 chrX 19422310 19422397 -143177533 + (CATATA)n Simple_repeat Simple_repeat 2 87 0 1024 221 54 0 chrX 19422874 19423096 -143176834 - HAL1 LINE L1 -690 1817 1584 224 235 0 20 chrX 19423592 19423643 -143176287 + GA-rich Low_complexity Low_complexity 1 50 0 2231 130 119 8 chrX 19426971 19427356 -143172574 + MSTA LTR MaLR 1 428 0 9086 176 20 2 chrX 19427357 19428978 -143170952 + MSTA-int LTR MaLR 2 1651 0 2365 101 119 13 chrX 19428978 19429365 -143170565 + MSTA LTR MaLR 1 428 0 243 308 247 7 chrX 19429917 19430063 -143169867 + MER20B DNA MER1_type 14 194 -589 3146 156 125 114 chrX 19430188 19430654 -143169276 - L1MC3 LINE L1 -12 7773 7314 317 82 20 0 chrX 19430654 19430703 -143169227 + (CATAT)n Simple_repeat Simple_repeat 4 53 0 3146 156 125 114 chrX 19430703 19430803 -143169127 - L1MC3 LINE L1 -471 7314 7217 377 265 0 1 chrX 19430803 19430900 -143169030 - MLT1F1 LTR MaLR -443 124 38 3146 156 125 114 chrX 19430900 19431249 -143168681 - L1MC3 LINE L1 -568 7217 6750 2461 64 0 0 chrX 19431459 19431754 -143168176 + AluY SINE Alu 1 295 -16 592 162 162 6 chrX 19431776 19431949 -143167981 + MER20B DNA MER1_type 545 744 -39 307 204 146 22 chrX 19431994 19432131 -143167799 + L1MC5 LINE L1 7535 7688 -273 1966 169 0 0 chrX 19432150 19432458 -143167472 - AluJb SINE Alu -4 308 1 216 0 0 0 chrX 19433615 19433639 -143166291 + (T)n Simple_repeat Simple_repeat 1 24 0 486 289 54 0 chrX 19434064 19434213 -143165717 + MIR SINE MIR 106 262 0 475 306 44 63 chrX 19434268 19434520 -143165410 - MIR SINE MIR -11 251 5 215 309 143 32 chrX 19434672 19434798 -143165132 + MIR SINE MIR 71 210 -52 25 75 0 0 chrX 19436396 19436449 -143163481 + AT_rich Low_complexity Low_complexity 1 53 0 414 297 179 26 chrX 19437578 19437918 -143162012 - L2 LINE L2 0 3313 2922 349 333 39 0 chrX 19437979 19438081 -143161849 - L2 LINE L2 -484 2830 2725 2345 106 0 3 chrX 19438910 19439221 -143160709 + AluSx SINE Alu 1 310 -2 30 27 0 0 chrX 19441414 19441451 -143158479 + AT_rich Low_complexity Low_complexity 1 37 0 218 240 13 80 chrX 19442862 19442937 -143156993 + L2 LINE L2 3184 3253 -19 223 260 0 27 chrX 19443008 19443081 -143156849 + GA-rich Low_complexity Low_complexity 5 75 0 342 0 0 0 chrX 19444740 19444778 -143155152 + (CTG)n Simple_repeat Simple_repeat 3 40 0 338 292 117 95 chrX 19445026 19445677 -143154253 - L1M2 LINE L1 -5701 1148 484 348 188 0 0 chrX 19446601 19446670 -143153260 + (TA)n Simple_repeat Simple_repeat 1 69 0 328 289 0 11 chrX 19446673 19446763 -143153167 + L1MC4 LINE L1 6615 6703 -1339 195 129 0 0 chrX 19446764 19446795 -143153135 + (TATG)n Simple_repeat Simple_repeat 4 34 0 315 272 0 8 chrX 19446795 19446918 -143153012 + L1MC4 LINE L1 1995 6983 -1339 * 330 284 23 0 chrX 19446897 19446985 -143152945 + L1MC4 LINE L1 6894 6983 -1339 317 302 57 0 chrX 19446919 19447025 -143152905 - L1MC4 LINE L1 -1339 6703 6592 * 197 190 410 10 chrX 19447083 19447183 -143152747 - MIR SINE MIR 0 262 123 1864 114 0 0 chrX 19647230 19647484 -142952446 + AluSx SINE Alu 59 312 0 1423 191 15 29 chrX 19647493 19647799 -142952131 + AluJo SINE Alu 14 315 0 25 51 0 0 chrX 19647799 19647838 -142952092 + AT_rich Low_complexity Low_complexity 1 39 0 794 279 126 38 chrX 19648420 19648889 -142951041 + MLT1J LTR MaLR 2 511 0 206 289 0 0 chrX 19649426 19649478 -142950452 + CT-rich Low_complexity Low_complexity 2 53 0 1867 120 53 14 chrX 19649600 19649883 -142950047 - AluJb SINE Alu -18 294 1 297 320 20 0 chrX 19649976 19650076 -142949854 + L2 LINE L2 2929 3030 -242 1885 163 0 3 chrX 19650095 19650402 -142949528 + AluJo SINE Alu 1 306 -6 816 171 6 11 chrX 19650421 19650597 -142949333 + GA-rich Low_complexity Low_complexity 4 178 0 480 211 15 8 chrX 19650610 19650743 -142949187 + GA-rich Low_complexity Low_complexity 1 134 0 2823 16 0 0 chrX 19650840 19651144 -142948786 + AluY SINE Alu 1 304 -7 686 187 122 0 chrX 19651298 19651437 -142948493 - FAM SINE Alu -19 156 1 1643 203 107 24 chrX 19651708 19652177 -142947753 - Charlie4a DNA MER1_type 0 508 1 660 214 47 93 chrX 19652643 19652900 -142947030 + MER112 DNA MER1_type 7 251 -9 213 229 21 0 chrX 19652900 19652948 -142946982 + L3 LINE CR1 1523 1571 -6 22 0 0 0 chrX 19652997 19653019 -142946911 + AT_rich Low_complexity Low_complexity 1 22 0 931 202 77 114 chrX 19653024 19653175 -142946755 - L1MC4 LINE L1 0 8042 7887 2233 100 0 0 chrX 19653175 19653456 -142946474 - AluSx SINE Alu -29 283 3 931 202 77 114 chrX 19653456 19653770 -142946160 - L1MC4 LINE L1 -155 7887 7594 7550 185 151 13 chrX 19653780 19654136 -142945794 - L1PB1 LINE L1 -2 6149 5843 420 20 0 0 chrX 19654136 19654185 -142945745 + (TA)n Simple_repeat Simple_repeat 2 50 0 7550 185 151 13 chrX 19654185 19655118 -142944812 - L1PB1 LINE L1 -308 5843 5040 2144 116 0 7 chrX 19655118 19655410 -142944520 + AluSx SINE Alu 1 290 -22 7550 185 151 13 chrX 19655410 19657500 -142942430 - L1PB1 LINE L1 -1111 5040 2277 322 197 244 16 chrX 19657503 19657630 -142942300 + MLT1F LTR MaLR 321 476 -66 6591 192 109 41 chrX 19657644 19659360 -142940570 - L1MC4 LINE L1 -2 8040 6208 225 204 204 0 chrX 19659360 19659409 -142940521 + MLT1F LTR MaLR 491 549 -6 309 261 97 23 chrX 19659416 19659566 -142940364 - L1MC4a LINE L1 -455 7353 7248 364 180 11 11 chrX 19659855 19659944 -142939986 + GA-rich Low_complexity Low_complexity 4 92 0 1042 88 6 28 chrX 19659946 19660128 -142939802 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 194 167 167 0 chrX 19660387 19660429 -142939501 + L2 LINE L2 3232 3280 -33 2033 149 3 3 chrX 19660447 19660749 -142939181 - AluJo SINE Alu -10 302 1 237 279 93 0 chrX 19660798 19660884 -142939046 - L2 LINE L2 -29 3243 3150 23 0 0 0 chrX 19660898 19660921 -142939009 + AT_rich Low_complexity Low_complexity 1 23 0 185 32 0 65 chrX 19661149 19661165 -142938765 + (CAT)n Simple_repeat Simple_repeat 2 17 -13 2653 34 0 0 chrX 19661165 19661462 -142938468 - AluY SINE Alu -14 297 1 185 32 0 65 chrX 19661462 19661476 -142938454 + (CAT)n Simple_repeat Simple_repeat 17 30 0 246 290 100 30 chrX 19661686 19661917 -142938013 - L1ME4a LINE L1 -76 6045 5799 261 291 17 81 chrX 19662067 19662160 -142937770 - LTR37B LTR ERV1 -270 198 101 12106 147 59 35 chrX 19662160 19662413 -142937517 + Charlie5 DNA MER1_type 1 247 -2377 2448 84 0 0 chrX 19662413 19662709 -142937221 + AluSx SINE Alu 1 296 -16 12106 147 59 35 chrX 19662709 19664934 -142934996 + Charlie5 DNA MER1_type 247 2544 -80 2427 109 0 0 chrX 19664934 19665245 -142934685 - AluSx SINE Alu -1 311 1 12106 147 59 35 chrX 19665245 19665328 -142934602 + Charlie5 DNA MER1_type 2544 2624 0 261 291 17 81 chrX 19665328 19665406 -142934524 - LTR37B LTR ERV1 -367 101 38 2419 64 0 7 chrX 19665482 19665778 -142934152 + AluSg SINE Alu 1 294 -16 289 317 117 70 chrX 19665835 19666487 -142933443 - L2 LINE L2 -456 2858 2157 711 201 92 12 chrX 19666487 19666651 -142933279 + MER5B DNA MER1_type 2 178 0 289 317 117 70 chrX 19666651 19666825 -142933105 - L2 LINE L2 -1157 2157 1993 405 0 0 0 chrX 19666917 19666962 -142932968 + (CA)n Simple_repeat Simple_repeat 2 46 0 2745 189 38 49 chrX 19667794 19668475 -142931455 - L1MD3 LINE L1 0 8041 7381 297 167 0 0 chrX 19668825 19668879 -142931051 + (TA)n Simple_repeat Simple_repeat 2 55 0 1674 156 52 0 chrX 19668882 19669152 -142930778 - AluJo SINE Alu -28 284 1 315 266 126 53 chrX 19669658 19669865 -142930065 + MIR SINE MIR 26 247 -15 197 273 0 18 chrX 19669901 19669956 -142929974 + MIR3 SINE MIR 10 63 -145 2231 114 7 3 chrX 19670397 19670705 -142929225 + AluSx SINE Alu 1 309 -3 619 237 19 79 chrX 19670778 19670993 -142928937 - MIR SINE MIR -13 249 48 467 226 155 0 chrX 19671197 19671352 -142928578 + MIR SINE MIR 16 194 -68 2052 139 7 7 chrX 19671517 19671826 -142928104 + AluJo SINE Alu 3 311 -1 3781 142 66 41 chrX 19672198 19672924 -142927006 - L1MB5 LINE L1 0 6174 5431 609 201 104 18 chrX 19672945 19672982 -142926948 + MER5B DNA MER1_type 1 33 -145 306 0 0 0 chrX 19672982 19673016 -142926914 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 609 201 104 18 chrX 19673016 19673142 -142926788 + MER5B DNA MER1_type 33 178 0 2295 108 3 0 chrX 19673173 19673478 -142926452 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 19673696 19673724 -142926206 + AT_rich Low_complexity Low_complexity 1 28 0 219 69 0 0 chrX 19673888 19673917 -142926013 + (CCA)n Simple_repeat Simple_repeat 2 30 0 536 217 11 94 chrX 19674181 19674361 -142925569 - MER90 LTR ERV1 0 614 450 * 1674 153 254 8 chrX 19674352 19674718 -142925212 + LTR32 LTR ERVL 16 471 0 2022 171 14 37 chrX 19674719 19675147 -142924783 - MER90 LTR ERV1 -157 418 1 277 294 96 7 chrX 19675315 19675461 -142924469 - MER90-int LTR ERV1 -162 6639 6481 2036 147 7 0 chrX 19675663 19675963 -142923967 - AluSx SINE Alu -10 302 1 732 172 39 0 chrX 19676148 19676276 -142923654 - MER45A DNA AcHobo -4 174 42 27 49 0 0 chrX 19677534 19677575 -142922355 + GC_rich Low_complexity Low_complexity 1 41 0 22 94 0 0 chrX 19677783 19677847 -142922083 + GC_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chrX 19677853 19677876 -142922054 + GC_rich Low_complexity Low_complexity 1 23 0 2788 35 0 0 chrX 19678482 19678792 -142921138 + AluSg SINE Alu 1 310 0 222 296 99 33 chrX 19679174 19679326 -142920604 + MIR SINE MIR 15 176 -86 2147 112 0 29 chrX 19679707 19680019 -142919911 - AluSx SINE Alu -4 308 6 1151 149 128 78 chrX 19681291 19681572 -142918358 + AluJb SINE Alu 1 295 -7 2008 130 7 3 chrX 19681573 19681866 -142918064 + AluSx SINE Alu 1 294 -18 292 195 183 0 chrX 19682368 19682450 -142917480 - Charlie4a DNA MER1_type -2 506 410 2118 82 19 4 chrX 19682531 19682800 -142917130 - AluSg SINE Alu -37 273 1 863 211 131 11 chrX 19682801 19683076 -142916854 - Charlie4a DNA MER1_type -184 324 17 308 260 178 14 chrX 19683281 19683427 -142916503 - MIR SINE MIR -44 218 49 699 159 220 16 chrX 19683487 19683669 -142916261 + MER20 DNA MER1_type 1 219 0 243 296 42 49 chrX 19684183 19684325 -142915605 + MER5A DNA MER1_type 48 188 -1 936 170 180 0 chrX 19686691 19686891 -142913039 + MER46A DNA MER2_type 1 236 0 621 259 0 0 chrX 19686944 19687079 -142912851 - FLAM_A SINE Alu -7 135 1 6887 67 17 8 chrX 19687314 19688608 -142911322 - L1PA8 LINE L1 0 6172 4864 428 215 11 21 chrX 19688901 19688994 -142910936 + MIR SINE MIR 19 110 -152 2330 207 91 30 chrX 19688997 19689284 -142910646 - L1M4 LINE L1 -1995 4151 3883 180 97 0 0 chrX 19689284 19689315 -142910615 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2330 207 91 30 chrX 19689315 19689627 -142910303 - L1M4 LINE L1 -2263 3883 3502 1527 179 0 64 chrX 19689627 19689940 -142909990 - AluJb SINE Alu -19 293 1 2330 207 91 30 chrX 19689940 19690029 -142909901 - L1M4 LINE L1 -2644 3502 3420 3429 85 23 13 chrX 19690044 19690516 -142909414 - LTR15 LTR ERV1 -16 477 1 652 246 111 14 chrX 19690518 19690868 -142909062 - L1M4 LINE L1 -2724 3422 3039 577 264 112 11 chrX 19691080 19691258 -142908672 + MER58C DNA MER1_type 20 215 0 2009 128 10 0 chrX 19691725 19692013 -142907917 - AluSx SINE Alu -21 291 1 1686 125 53 15 chrX 19693186 19693334 -142906596 - AluJb SINE Alu -38 274 110 2477 78 0 3 chrX 19693334 19693643 -142906287 - AluSg SINE Alu 0 310 3 1686 125 53 15 chrX 19693643 19693758 -142906172 - AluJb SINE Alu -202 110 1 453 243 120 2 chrX 19694061 19694169 -142905761 - MLT1E1 LTR MaLR 0 654 560 1972 133 37 0 chrX 19694169 19694463 -142905467 - AluSx SINE Alu -7 305 1 2795 121 29 33 chrX 19694474 19695224 -142904706 - L1P5 LINE L1 -480 5671 4925 1115 183 25 29 chrX 19695319 19695560 -142904370 - L1MB7 LINE L1 -10 6174 5935 1235 112 0 0 chrX 19695560 19695721 -142904209 - AluSp SINE Alu -19 294 134 891 169 174 29 chrX 19695721 19695963 -142903967 - L1MB7 LINE L1 -234 5950 5674 410 97 187 18 chrX 19696405 19696504 -142903426 - L1ME1 LINE L1 -13 6153 6048 225 0 0 0 chrX 19697912 19697937 -142901993 + (T)n Simple_repeat Simple_repeat 1 25 0 693 173 58 0 chrX 19699396 19699535 -142900395 - MER5B DNA MER1_type -1 177 31 1859 164 11 0 chrX 19699546 19699832 -142900098 - AluJb SINE Alu -23 289 1 21 0 0 0 chrX 19699934 19699955 -142899975 + AT_rich Low_complexity Low_complexity 1 21 0 269 296 34 0 chrX 19700686 19700774 -142899156 - Charlie8 DNA MER1_type -313 2104 2014 986 211 4 60 chrX 19700882 19701114 -142898816 - Charlie8 DNA MER1_type -588 1829 1611 1262 242 116 34 chrX 19701696 19702163 -142897767 - MLT1D LTR MaLR 0 505 1 276 186 85 0 chrX 19702173 19702232 -142897698 - Charlie8 DNA MER1_type -2293 124 61 975 149 0 14 chrX 19702232 19702380 -142897550 + AluJb SINE Alu 1 146 -166 1899 82 4 34 chrX 19702380 19702649 -142897281 + AluY SINE Alu 45 305 -6 1161 152 6 0 chrX 19702669 19702847 -142897083 + AluJb SINE Alu 118 296 -16 438 20 0 0 chrX 19703934 19703985 -142895945 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 223 132 0 0 chrX 19704326 19704364 -142895566 + MER5B DNA MER1_type 3 40 -138 558 205 14 53 chrX 19704368 19704522 -142895408 - LTR35 LTR ERV1 -1 677 497 248 210 210 17 chrX 19705198 19705317 -142894613 - MER5B DNA MER1_type -36 142 1 412 203 23 39 chrX 19705354 19705482 -142894448 - MER5A DNA MER1_type -63 126 1 785 128 0 0 chrX 19705687 19705804 -142894126 + L1PB1 LINE L1 6033 6149 -2 214 290 167 0 chrX 19706077 19706215 -142893715 + L2 LINE L2 2216 2376 -938 1974 146 10 0 chrX 19706687 19706989 -142892941 - AluSx SINE Alu -7 305 1 1168 132 0 21 chrX 19707438 19707628 -142892302 - AluJb SINE Alu -7 305 120 2262 98 3 7 chrX 19707792 19708088 -142891842 + AluSx SINE Alu 1 295 -17 365 196 62 52 chrX 19708217 19708314 -142891616 - MER58 DNA MER1_type -109 106 9 2049 127 6 32 chrX 19709504 19709818 -142890112 + AluSx SINE Alu 1 306 -6 1631 102 4 4 chrX 19710106 19710331 -142889599 + AluSg/x SINE Alu 76 300 -12 518 224 267 0 chrX 19710571 19710732 -142889198 - MER3 DNA MER1_type -5 204 1 180 0 0 0 chrX 19711734 19711754 -142888176 + (T)n Simple_repeat Simple_repeat 1 20 0 1199 259 132 41 chrX 19713019 19713626 -142886304 + L1MC4 LINE L1 7143 7804 -238 571 246 45 17 chrX 19714387 19714566 -142885364 - L1MC5 LINE L1 -47 7914 7731 2134 119 7 3 chrX 19715170 19715464 -142884466 + AluSx SINE Alu 1 295 -17 5590 73 1 0 chrX 19716064 19716779 -142883151 - L1PA8 LINE L1 0 6172 5457 272 89 44 0 chrX 19716779 19716824 -142883106 + Alu SINE Alu 249 295 -5 24 53 0 0 chrX 19716826 19716864 -142883066 + AT_rich Low_complexity Low_complexity 1 38 0 238 317 149 0 chrX 19716915 19717123 -142882807 + L1ME LINE L1 3719 3957 -2189 1252 102 12 0 chrX 19717141 19717307 -142882623 + AluSg/x SINE Alu 130 297 -15 216 0 0 0 chrX 19717307 19717331 -142882599 + (TA)n Simple_repeat Simple_repeat 2 25 0 340 118 0 0 chrX 19717333 19717384 -142882546 + L1PA16 LINE L1 6106 6156 -10 346 275 121 45 chrX 19717788 19717918 -142882012 + L1ME LINE L1 4408 4527 -1619 2262 93 10 0 chrX 19717918 19718208 -142881722 + AluSx SINE Alu 1 293 -19 346 275 121 45 chrX 19718208 19718408 -142881522 + L1ME LINE L1 4527 4763 -1383 2528 49 3 16 chrX 19718929 19719234 -142880696 + AluY SINE Alu 1 301 -10 250 300 0 0 chrX 19719304 19719394 -142880536 + L1ME LINE L1 5467 5556 -565 1714 164 0 26 chrX 19719913 19720218 -142879712 - AluJb SINE Alu -15 297 1 21 71 0 0 chrX 19720248 19720290 -142879640 + AT_rich Low_complexity Low_complexity 1 42 0 869 145 0 0 chrX 19720618 19720742 -142879188 + FLAM_C SINE Alu 1 124 -19 35 24 0 0 chrX 19720743 19720785 -142879145 + AT_rich Low_complexity Low_complexity 1 42 0 248 241 98 9 chrX 19720876 19720988 -142878942 + MIR SINE MIR 87 208 -54 1301 166 15 5 chrX 19722702 19722907 -142877023 + AluJb SINE Alu 85 291 -21 2451 84 7 3 chrX 19722944 19723253 -142876677 + AluSx SINE Alu 1 310 -2 889 180 130 10 chrX 19723599 19723799 -142876131 + MER58A DNA MER1_type 1 224 0 2490 70 0 3 chrX 19723873 19724174 -142875756 - AluSp SINE Alu -13 300 1 1304 248 35 0 chrX 19724208 19724498 -142875432 - AluJb SINE Alu -10 302 3 2577 58 7 0 chrX 19725261 19725570 -142874360 + AluY SINE Alu 1 311 0 603 159 115 9 chrX 19726054 19726167 -142873763 + FLAM_A SINE Alu 10 134 -8 1950 140 3 19 chrX 19726612 19726919 -142873011 - AluSx SINE Alu -10 302 1 416 191 29 156 chrX 19726935 19727031 -142872899 + LTR45B LTR ERV1 324 390 -99 891 192 0 0 chrX 19727031 19727187 -142872743 + FRAM SINE Alu 1 156 -10 416 191 29 156 chrX 19727187 19727263 -142872667 + LTR45B LTR ERV1 390 474 -15 2247 98 0 3 chrX 19728059 19728355 -142871575 - AluSq SINE Alu -17 296 2 405 231 141 19 chrX 19728685 19728841 -142871089 - MLT1L LTR MaLR -221 394 220 324 227 11 45 chrX 19729710 19729798 -142870132 - MER5B DNA MER1_type -3 175 91 583 163 73 45 chrX 19729858 19730036 -142869894 + MER5A DNA MER1_type 1 183 -6 279 239 12 42 chrX 19730723 19730890 -142869040 + CT-rich Low_complexity Low_complexity 4 165 0 31 0 0 0 chrX 19731341 19731372 -142868558 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chrX 19731523 19731544 -142868386 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 22 0 0 0 chrX 19732427 19732449 -142867481 + AT_rich Low_complexity Low_complexity 1 22 0 365 113 0 0 chrX 19732449 19732502 -142867428 - Alu SINE Alu -10 292 240 2277 113 6 3 chrX 19732553 19732864 -142867066 - AluSx SINE Alu 0 312 1 1941 132 10 10 chrX 19734228 19734517 -142865413 - AluSx SINE Alu -23 289 1 1213 198 108 10 chrX 19734854 19735294 -142864636 - Charlie4a DNA MER1_type 0 508 1 38915 84 8 8 chrX 19736321 19742463 -142857467 - L1PA6 LINE L1 0 6154 11 571 306 84 16 chrX 19743339 19743430 -142856500 + L1MC4 LINE L1 6962 7045 -997 2401 84 0 0 chrX 19743430 19743727 -142856203 + AluY SINE Alu 1 297 -14 571 306 84 16 chrX 19743727 19743958 -142855972 + L1MC4 LINE L1 7045 7306 -736 1005 210 46 18 chrX 19743959 19744365 -142855565 - MLT1D LTR MaLR 0 505 43 1053 237 119 29 chrX 19744424 19744834 -142855096 + L1MC4 LINE L1 7315 7761 -281 2386 84 0 7 chrX 19745615 19745913 -142854017 + AluSx SINE Alu 1 296 -16 502 212 182 36 chrX 19745939 19746104 -142853826 - MER5A DNA MER1_type 0 189 1 4231 131 72 8 chrX 19746322 19746590 -142853340 + L1MA4 LINE L1 4558 4807 -1493 2578 63 0 0 chrX 19746590 19746893 -142853037 + AluY SINE Alu 1 303 -8 4231 131 72 8 chrX 19746893 19747629 -142852301 + L1MA4 LINE L1 4807 5613 -687 264 160 0 32 chrX 19747629 19747723 -142852207 + (TA)n Simple_repeat Simple_repeat 2 92 0 806 139 139 0 chrX 19747728 19747893 -142852037 - L1MA4 LINE L1 -332 5968 5781 2964 163 93 0 chrX 19747933 19748533 -142851397 + L1MA4 LINE L1 5642 6297 -3 1744 144 112 90 chrX 19749437 19749894 -142850036 + MLT1C LTR MaLR 1 467 0 267 230 144 101 chrX 19749937 19750076 -142849854 - MLT1I LTR MaLR 0 409 288 1615 128 4 0 chrX 19750398 19750632 -142849298 + AluSg/x SINE Alu 65 299 -11 1809 107 107 11 chrX 19751141 19751155 -142848775 - AluSq SINE Alu -15 298 287 351 0 0 0 chrX 19751155 19751194 -142848736 + (TG)n Simple_repeat Simple_repeat 2 40 0 1809 107 107 11 chrX 19751194 19751451 -142848479 - AluSq SINE Alu -26 287 1 2382 87 0 3 chrX 19751553 19751852 -142848078 + AluSg SINE Alu 1 298 -12 1379 111 11 0 chrX 19752281 19752471 -142847459 + AluSq SINE Alu 1 192 -121 649 250 95 38 chrX 19753056 19753191 -142846739 - L1ME LINE L1 -567 5603 5477 1828 133 4 25 chrX 19753191 19753469 -142846461 + AluSx SINE Alu 2 273 -39 252 0 0 0 chrX 19753469 19753497 -142846433 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 649 250 95 38 chrX 19753497 19753937 -142845993 - L1ME LINE L1 -692 5478 4999 2329 104 3 0 chrX 19754468 19754777 -142845153 - AluSx SINE Alu -2 310 1 2027 144 0 3 chrX 19755064 19755356 -142844574 + AluJb SINE Alu 1 291 -21 854 229 114 54 chrX 19756244 19756816 -142843114 + MER115 DNA AcHobo 1 4031 0 354 156 0 0 chrX 19757571 19757635 -142842295 + C-rich Low_complexity Low_complexity 5 68 0 1754 139 0 4 chrX 19757635 19757880 -142842050 - AluSx SINE Alu -32 280 37 243 236 0 0 chrX 19757924 19757996 -142841934 + CT-rich Low_complexity Low_complexity 1 72 0 545 260 27 7 chrX 19758224 19758374 -142841556 - MIR SINE MIR -108 154 2 584 258 56 11 chrX 19758491 19758669 -142841261 - LTR33A LTR ERVL -21 502 317 438 243 91 77 chrX 19758868 19759054 -142840876 - LTR33A LTR ERVL -349 174 13 383 266 27 80 chrX 19759105 19759293 -142840637 - MER104 DNA MER2_type -2 178 1 312 341 60 44 chrX 19759396 19759501 -142840429 - L2 LINE L2 -213 3059 2957 2626 39 0 6 chrX 19759501 19759812 -142840118 - AluY SINE Alu -2 309 1 312 341 60 44 chrX 19759812 19759958 -142839972 - L2 LINE L2 -315 2957 2804 789 160 9 173 chrX 19760388 19760464 -142839466 + MER5A DNA MER1_type 1 88 -101 2363 103 0 0 chrX 19760464 19760776 -142839154 + AluSx SINE Alu 1 312 0 789 160 9 173 chrX 19760776 19760860 -142839070 + MER5A DNA MER1_type 88 116 -73 2088 133 0 0 chrX 19760860 19761146 -142838784 - AluJb SINE Alu -26 286 1 789 160 9 173 chrX 19761146 19761209 -142838721 + MER5A DNA MER1_type 116 188 -1 2257 200 46 49 chrX 19761446 19761900 -142838030 + MER74B LTR ERVL 56 509 -113 4833 156 13 13 chrX 19761900 19762726 -142837204 - LTR1B LTR ERV1 0 826 1 2257 200 46 49 chrX 19762726 19762840 -142837090 + MER74B LTR ERVL 509 622 0 359 283 113 13 chrX 19762840 19762999 -142836931 + MIR SINE MIR 35 209 -53 345 256 40 44 chrX 19763394 19763531 -142836399 + MIR SINE MIR 16 164 -63 213 125 104 0 chrX 19763689 19763737 -142836193 + CT-rich Low_complexity Low_complexity 1 53 0 1969 94 69 0 chrX 19764732 19765007 -142834923 - AluSc SINE Alu -15 294 1 975 230 0 63 chrX 19765037 19765210 -142834720 - MER58A DNA MER1_type -2196 224 69 2201 118 0 16 chrX 19765210 19765525 -142834405 + AluJb SINE Alu 1 310 -2 975 230 0 63 chrX 19765525 19765590 -142834340 - MER58A DNA MER1_type -2351 69 1 183 80 0 0 chrX 19765654 19765679 -142834251 + (T)n Simple_repeat Simple_repeat 1 25 0 1328 90 5 0 chrX 19765989 19766178 -142833752 - L1MA2 LINE L1 0 6304 6115 1767 96 0 32 chrX 19766861 19767146 -142832784 - AluSx SINE Alu 0 320 44 2026 145 0 3 chrX 19767151 19767441 -142832489 - AluSx SINE Alu -23 289 1 221 0 0 33 chrX 19767453 19767483 -142832447 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2154 89 7 0 chrX 19767492 19767763 -142832167 - AluSg SINE Alu -37 273 1 2047 130 3 7 chrX 19768573 19768880 -142831050 - AluSx SINE Alu -6 306 1 436 344 73 13 chrX 19771232 19771534 -142828396 - MARNA DNA Mariner -117 469 150 411 224 301 0 chrX 19771574 19771717 -142828213 + MER5A DNA MER1_type 4 189 0 1789 180 27 15 chrX 19772216 19772549 -142827381 - MER58B DNA MER1_type -4 337 1 25 0 0 0 chrX 19772698 19772723 -142827207 + AT_rich Low_complexity Low_complexity 1 25 0 291 54 0 0 chrX 19772875 19772912 -142827018 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chrX 19772912 19772932 -142826998 + (TA)n Simple_repeat Simple_repeat 1 20 0 2530 73 0 0 chrX 19772932 19773235 -142826695 - AluSx SINE Alu -9 303 1 22 56 0 0 chrX 19773586 19773622 -142826308 + AT_rich Low_complexity Low_complexity 1 36 0 2481 57 0 10 chrX 19773691 19773991 -142825939 + AluY SINE Alu 1 297 -14 231 304 15 70 chrX 19774890 19774916 -142825014 - MIR3 SINE MIR -30 178 152 760 156 101 45 chrX 19774916 19775095 -142824835 - MER5A DNA MER1_type 0 189 1 231 304 15 70 chrX 19775095 19775196 -142824734 - MIR3 SINE MIR -56 152 55 2072 99 34 17 chrX 19775851 19776143 -142823787 - AluSx SINE Alu -15 297 1 2322 144 68 23 chrX 19776264 19776659 -142823271 - LTR42 LTR ERVL 0 495 83 1178 145 0 0 chrX 19776659 19776831 -142823099 + AluSg/x SINE Alu 132 303 -9 359 168 0 119 chrX 19776831 19776932 -142822998 - LTR42 LTR ERVL -402 93 5 232 279 199 48 chrX 19777119 19777235 -142822695 - L2 LINE L2 -8 3305 3208 602 186 93 0 chrX 19777235 19777353 -142822577 + FLAM_A SINE Alu 2 130 -3 232 279 199 48 chrX 19777353 19778033 -142821897 - L2 LINE L2 -105 3208 2377 207 0 0 0 chrX 19778115 19778138 -142821792 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 243 0 0 0 chrX 19778137 19778164 -142821766 + (TA)n Simple_repeat Simple_repeat 2 28 0 564 295 29 0 chrX 19778169 19778373 -142821557 - MIR SINE MIR -36 226 18 365 327 39 0 chrX 19779205 19779361 -142820569 + MIR SINE MIR 37 198 -64 1896 121 0 95 chrX 19779364 19779702 -142820228 + AluSx SINE Alu 1 306 -6 984 260 12 8 chrX 19779804 19780058 -142819872 + MER46C DNA MER2_type 80 334 -4 515 210 54 65 chrX 19780064 19780250 -142819680 + MER53 DNA DNA 3 186 -3 627 267 102 0 chrX 19780250 19780437 -142819493 - MIR SINE MIR -32 230 25 21 36 0 0 chrX 19780505 19780533 -142819397 + AT_rich Low_complexity Low_complexity 1 28 0 2389 78 3 16 chrX 19781291 19781624 -142818306 + AluY SINE Alu 1 311 0 953 147 0 0 chrX 19781723 19781866 -142818064 - FLAM_C SINE Alu 0 143 1 317 257 47 9 chrX 19782548 19782717 -142817213 + MER115 DNA AcHobo 39 251 -442 231 222 0 0 chrX 19782782 19782822 -142817108 + Zaphod DNA AcHobo 3945 3984 -47 1147 246 108 42 chrX 19782822 19783336 -142816594 - MLT1H LTR MaLR 0 555 1 302 200 0 0 chrX 19783338 19783388 -142816542 + Zaphod DNA AcHobo 3982 4031 0 2173 126 3 3 chrX 19783432 19783733 -142816197 - AluSx SINE Alu -11 301 1 186 189 0 0 chrX 19785333 19785370 -142814560 + (CA)n Simple_repeat Simple_repeat 2 38 0 2214 91 29 16 chrX 19785970 19786279 -142813651 - AluSq SINE Alu 0 313 1 615 241 35 24 chrX 19786282 19786452 -142813478 - L1ME LINE L1 -394 5727 5556 2035 118 31 0 chrX 19786455 19786742 -142813188 + AluSq SINE Alu 1 296 -17 1011 225 67 0 chrX 19786822 19787031 -142812899 + MER58A DNA MER1_type 2 224 0 2046 111 37 13 chrX 19787161 19787459 -142812471 + AluSx SINE Alu 1 305 -7 371 331 39 31 chrX 19787695 19787949 -142811981 - L1M4 LINE L1 -2299 3847 3592 2073 152 0 0 chrX 19788114 19788411 -142811519 + AluSx SINE Alu 1 297 -15 490 216 35 0 chrX 19788444 19788560 -142811370 - L1MC4 LINE L1 0 8042 7923 253 237 14 36 chrX 19788579 19788718 -142811212 + (TA)n Simple_repeat Simple_repeat 2 137 0 186 250 0 0 chrX 19788867 19788939 -142810991 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 185 62 0 31 chrX 19789080 19789112 -142810818 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1865 160 0 4 chrX 19789112 19789393 -142810537 - AluSx SINE Alu -32 280 1 435 231 8 179 chrX 19789497 19789613 -142810317 + MIR SINE MIR 48 100 -162 1188 159 19 5 chrX 19789613 19789821 -142810109 + L1PB3 LINE L1 5943 6153 -1 435 231 8 179 chrX 19789821 19789955 -142809975 + MIR SINE MIR 100 255 -7 2314 107 0 0 chrX 19791000 19791300 -142808630 - AluSq SINE Alu -13 300 1 2266 115 0 3 chrX 19791757 19792070 -142807860 + AluSx SINE Alu 1 312 0 797 133 7 13 chrX 19792094 19792244 -142807686 + L1MA4 LINE L1 6143 6291 -9 2213 105 7 0 chrX 19792429 19792723 -142807207 - AluSx SINE Alu -14 298 3 493 272 42 62 chrX 19793059 19793287 -142806643 - MLT1K LTR MaLR -14 601 369 192 196 22 185 chrX 19793328 19793384 -142806546 - L2 LINE L2 -44 3269 3231 1648 102 159 0 chrX 19793384 19793671 -142806259 + AluSx SINE Alu 1 326 0 192 196 22 185 chrX 19793671 19793705 -142806225 - L2 LINE L2 -82 3231 3193 1207 196 34 40 chrX 19793751 19794077 -142805853 + MER33 DNA MER1_type 1 324 0 417 270 52 89 chrX 19794160 19794187 -142805743 + L2 LINE L2 3053 3079 -234 1594 181 49 3 chrX 19794187 19794474 -142805456 + AluSx SINE Alu 1 300 -12 417 270 52 89 chrX 19794474 19794716 -142805214 + L2 LINE L2 3079 3312 -1 322 174 58 0 chrX 19795068 19795137 -142804793 + MIR SINE MIR 63 135 -127 186 229 0 0 chrX 19795245 19795280 -142804650 + L2 LINE L2 3263 3297 -16 2172 116 0 0 chrX 19795677 19795970 -142803960 - AluSx SINE Alu -19 293 1 1973 214 52 2 chrX 19796048 19796510 -142803420 + Charlie4a DNA MER1_type 22 506 -2 1003 190 0 0 chrX 19796875 19797038 -142802892 + FRAM SINE Alu 2 164 -12 449 278 37 0 chrX 19798505 19798613 -142801317 - MIR SINE MIR -113 149 38 315 220 33 66 chrX 19798643 19798697 -142801233 - MIR SINE MIR -98 164 113 2082 121 22 112 chrX 19798697 19799109 -142800821 - THE1C LTR MaLR 0 375 1 315 220 33 66 chrX 19799109 19799145 -142800785 - MIR SINE MIR -149 113 77 1171 220 30 43 chrX 19799171 19799476 -142800454 - MER33 DNA MER1_type -1 323 23 615 213 16 0 chrX 19799496 19799618 -142800312 - MER5B DNA MER1_type -2 176 53 2282 95 0 0 chrX 19799618 19799926 -142800004 - AluSx SINE Alu 0 308 1 530 238 125 6 chrX 19800845 19801005 -142798925 - HsTC2 DNA Tc2 0 1900 1722 2588 111 15 15 chrX 19801011 19801406 -142798524 - L1PA13 LINE L1 -7 6156 5762 297 192 0 0 chrX 19801406 19801458 -142798472 - MER5A DNA MER1_type -126 63 12 2335 82 3 0 chrX 19802295 19802589 -142797341 - AluSg SINE Alu -15 295 1 524 318 80 17 chrX 19802823 19803112 -142796818 - L2 LINE L2 -351 2963 2657 1914 166 7 0 chrX 19803827 19804129 -142795801 + AluJb SINE Alu 1 304 -8 873 210 10 70 chrX 19804543 19804691 -142795239 + MER5A DNA MER1_type 2 137 -52 2329 90 0 26 chrX 19804691 19805003 -142794927 - AluSq SINE Alu -9 304 1 873 210 10 70 chrX 19805003 19805054 -142794876 + MER5A DNA MER1_type 136 189 0 508 282 160 11 chrX 19805405 19805593 -142794337 + MIR SINE MIR 35 250 -12 2066 101 11 14 chrX 19805714 19806000 -142793930 + AluSx SINE Alu 1 285 -27 1738 167 0 20 chrX 19807263 19807556 -142792374 + AluJo SINE Alu 1 287 -25 263 301 106 9 chrX 19808335 19808448 -142791482 - L2 LINE L2 -4 3268 3145 698 280 94 30 chrX 19808597 19808683 -142791247 + L1M4 LINE L1 4968 5047 -1099 2326 96 10 0 chrX 19808683 19808810 -142791120 + AluSx SINE Alu 3 127 -185 2328 88 3 19 chrX 19808810 19809127 -142790803 + AluSx SINE Alu 1 312 0 2326 96 10 0 chrX 19809127 19809301 -142790629 + AluSx SINE Alu 127 307 -5 698 280 94 30 chrX 19809301 19809586 -142790344 + L1M4 LINE L1 5047 5363 -783 492 155 225 8 chrX 19809601 19809730 -142790200 + L1ME3A LINE L1 5993 6149 -21 726 257 22 35 chrX 19810116 19810342 -142789588 - MIR SINE MIR -9 253 31 2344 89 20 0 chrX 19810501 19810803 -142789127 - AluSg SINE Alu -2 308 1 2254 103 0 3 chrX 19811667 19811957 -142787973 + AluSx SINE Alu 9 297 -15 189 0 0 0 chrX 19812151 19812172 -142787758 + (T)n Simple_repeat Simple_repeat 1 21 0 691 206 71 7 chrX 19815501 19815642 -142784288 - MER58B DNA MER1_type 0 341 192 621 246 102 80 chrX 19816163 19816651 -142783279 - L1MC5 LINE L1 -63 7898 7400 482 216 60 43 chrX 19816641 19816834 -142783096 + L1MC5 LINE L1 7023 7249 -625 * 264 310 62 9 chrX 19816836 19816949 -142782981 + L1MC4 LINE L1 7345 7463 -579 275 355 50 8 chrX 19817614 19817735 -142782195 + MIR3 SINE MIR 34 159 -49 249 368 83 15 chrX 19818456 19818589 -142781341 - MER91A DNA MER1_type -17 179 38 392 156 167 0 chrX 19818994 19819084 -142780846 - L1MA4 LINE L1 -2 6298 6194 * 11102 176 27 73 chrX 19819076 19821032 -142778898 - L1P4 LINE L1 -513 5652 3608 743 160 67 0 chrX 19821032 19821151 -142778779 - FLAM_A SINE Alu -6 127 1 11102 176 27 73 chrX 19821151 19822158 -142777772 - L1P4 LINE L1 -2557 3608 2868 2360 97 3 0 chrX 19822158 19822457 -142777473 + AluSq SINE Alu 1 300 -13 11102 176 27 73 chrX 19822457 19822870 -142777060 - L1P4 LINE L1 -3297 2868 2438 4390 153 10 14 chrX 19822895 19823599 -142776331 - L1M3f LINE L1 -4625 703 3 728 213 62 71 chrX 19824764 19825004 -142774926 - L1ME1 LINE L1 -4 6162 5925 2383 197 60 21 chrX 19825007 19825891 -142774039 - L1ME1 LINE L1 -309 5857 4935 2154 128 0 0 chrX 19825891 19826187 -142773743 - AluSx SINE Alu -16 296 1 2383 197 60 21 chrX 19826187 19826236 -142773694 - L1ME1 LINE L1 -1231 4935 4889 2288 121 0 0 chrX 19826274 19826581 -142773349 - AluSx SINE Alu 0 312 6 404 324 62 0 chrX 19826877 19827022 -142772908 + MIR3 SINE MIR 30 183 -25 471 261 42 28 chrX 19827711 19827853 -142772077 - MER5A DNA MER1_type 0 189 46 328 304 87 37 chrX 19827715 19827876 -142772054 + MER5A DNA MER1_type 18 186 -3 * 302 327 170 22 chrX 19828236 19828548 -142771382 + L2 LINE L2 2487 2844 -470 2549 118 28 3 chrX 19828585 19828940 -142770990 - THE1B LTR MaLR 0 364 1 2070 150 0 0 chrX 19829238 19829538 -142770392 - AluSx SINE Alu -12 300 1 2405 93 0 6 chrX 19829603 19829915 -142770015 - AluSg SINE Alu 0 310 1 282 292 10 31 chrX 19829941 19830037 -142769893 - L2 LINE L2 -2 3311 3218 318 115 0 0 chrX 19830987 19831039 -142768891 + (TTTCC)n Simple_repeat Simple_repeat 3 54 0 1034 309 47 12 chrX 19834055 19834480 -142765450 - MLT1L LTR MaLR 0 615 71 234 263 18 0 chrX 19834438 19834495 -142765435 - LTR67 LTR ERVL -401 156 99 * 2061 127 34 0 chrX 19834632 19834923 -142765007 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 19834959 19834983 -142764947 + AT_rich Low_complexity Low_complexity 1 24 0 309 276 5 73 chrX 19835035 19835227 -142764703 + GA-rich Low_complexity Low_complexity 1 179 0 2246 106 6 34 chrX 19835370 19835691 -142764239 + AluSx SINE Alu 1 312 0 274 230 120 20 chrX 19836878 19836978 -142762952 - L1ME4a LINE L1 -5 6116 6007 493 248 13 46 chrX 19837052 19837205 -142762725 + MER5A DNA MER1_type 18 165 -24 2320 97 0 13 chrX 19837755 19838065 -142761865 + AluSx SINE Alu 1 306 -6 1372 242 101 11 chrX 19838304 19838680 -142761250 - MLT1J2 LTR MaLR -2 448 39 3407 118 17 9 chrX 19838828 19839362 -142760568 - L1MA2 LINE L1 -34 6270 5733 183 269 103 39 chrX 19839363 19839441 -142760489 + L2 LINE L2 3212 3294 -19 486 234 170 4 chrX 19839833 19839989 -142759941 - MIR SINE MIR -63 145 19 6259 77 13 3 chrX 19840178 19841027 -142758903 - L1PB2 LINE L1 -2 6149 5293 682 219 56 0 chrX 19841350 19841510 -142758420 - MER63B DNA MER1_type -267 169 1 581 256 147 0 chrX 19841974 19842130 -142757800 + MER5A DNA MER1_type 11 189 0 987 186 38 6 chrX 19842199 19842382 -142757548 - MER5A DNA MER1_type 0 189 1 329 314 124 7 chrX 19842494 19842647 -142757283 + MIR SINE MIR 32 202 -60 790 130 0 0 chrX 19842687 19842802 -142757128 - MER46A DNA MER2_type -4 232 118 1906 143 3 29 chrX 19843354 19843662 -142756268 + AluJb SINE Alu 1 300 -12 485 299 86 25 chrX 19843691 19843763 -142756167 + MIR SINE MIR 7 73 -189 745 184 77 18 chrX 19843763 19843931 -142755999 - MER5B DNA MER1_type 0 178 1 485 299 86 25 chrX 19843931 19844055 -142755875 + MIR SINE MIR 73 215 -47 326 324 147 15 chrX 19844634 19844770 -142755160 + L2 LINE L2 3118 3271 -1 290 328 41 25 chrX 19844848 19844970 -142754960 + L2 LINE L2 3138 3261 -11 1123 227 152 86 chrX 19845077 19845185 -142754745 + Charlie7 DNA MER1_type 1 100 -2512 1404 120 0 10 chrX 19845185 19845385 -142754545 + L1PB3 LINE L1 5957 6154 0 1123 227 152 86 chrX 19845385 19845534 -142754396 + Charlie7 DNA MER1_type 100 238 -2374 2239 93 0 3 chrX 19845534 19845825 -142754105 + AluSx SINE Alu 10 299 -13 1123 227 152 86 chrX 19845825 19846244 -142753686 + Charlie7 DNA MER1_type 238 723 -1889 404 213 55 18 chrX 19846228 19846392 -142753538 + Charlie7 DNA MER1_type 2411 2580 -32 * 325 362 58 0 chrX 19846786 19846924 -142753006 - MIR SINE MIR -69 193 48 3258 184 87 52 chrX 19847003 19847316 -142752614 - MER6 DNA MER2_type 0 865 565 1296 37 0 43 chrX 19847316 19847480 -142752450 - L1PA5 LINE L1 -1 6153 5997 3258 184 87 52 chrX 19847480 19848001 -142751929 - MER6 DNA MER2_type -300 565 1 912 158 0 0 chrX 19849012 19849145 -142750785 - FLAM_C SINE Alu 0 133 1 2163 104 14 10 chrX 19849490 19849787 -142750143 + AluSx SINE Alu 1 298 -14 480 18 0 0 chrX 19849871 19849928 -142750002 + (TG)n Simple_repeat Simple_repeat 2 58 0 629 313 52 9 chrX 19849945 19850156 -142749774 + L3b LINE CR1 1270 1489 -94 2184 138 0 0 chrX 19850803 19851115 -142748815 - AluSx SINE Alu 0 312 1 1029 252 28 17 chrX 19851541 19851831 -142748099 - L2 LINE L2 -1863 1451 1159 5257 148 33 48 chrX 19851851 19851911 -142748019 - L1MA9 LINE L1 0 6312 6253 2191 102 0 10 chrX 19851911 19852204 -142747726 + AluSx SINE Alu 1 290 -22 5257 148 33 48 chrX 19852204 19853185 -142746745 - L1MA9 LINE L1 -59 6253 5287 5256 89 3 1 chrX 19853547 19854206 -142745724 + PABL_A LTR ERV1 1 660 0 495 257 46 63 chrX 19854986 19855161 -142744769 - MER5A DNA MER1_type -7 182 11 234 0 0 0 chrX 19855205 19855231 -142744699 + (A)n Simple_repeat Simple_repeat 1 26 0 670 72 0 0 chrX 19855932 19856015 -142743915 - AluSg/x SINE Alu -22 290 208 245 151 0 109 chrX 19856016 19856071 -142743859 - Alu SINE Alu -266 37 1 24 0 0 0 chrX 19856418 19856442 -142743488 + AT_rich Low_complexity Low_complexity 1 24 0 2095 141 0 13 chrX 19856450 19856762 -142743168 - AluSx SINE Alu -4 308 1 693 294 42 5 chrX 19856953 19857167 -142742763 - MIR SINE MIR 0 262 41 21 0 0 0 chrX 19857391 19857412 -142742518 + AT_rich Low_complexity Low_complexity 1 21 0 2261 131 117 65 chrX 19857982 19858425 -142741505 - MER31B LTR ERV1 0 466 1 24 0 0 0 chrX 19859286 19859310 -142740620 + AT_rich Low_complexity Low_complexity 1 24 0 196 275 163 25 chrX 19859366 19859446 -142740484 + MIR SINE MIR 61 151 -57 1302 229 12 102 chrX 19859519 19859850 -142740080 - MLT1H LTR MaLR -146 403 113 1973 136 3 0 chrX 19859850 19860144 -142739786 - AluJb SINE Alu -7 305 11 1302 229 12 102 chrX 19860144 19860214 -142739716 - MLT1H LTR MaLR -436 113 38 389 292 9 0 chrX 19860246 19860359 -142739571 + MIR SINE MIR 138 251 -11 2418 88 0 0 chrX 19860688 19860995 -142738935 - AluY SINE Alu -4 307 1 21 89 0 0 chrX 19861924 19861980 -142737950 + AT_rich Low_complexity Low_complexity 1 56 0 201 138 0 0 chrX 19862334 19862363 -142737567 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2403 91 0 0 chrX 19863729 19864036 -142735894 - AluSx SINE Alu -5 307 1 2143 105 7 20 chrX 19864921 19865227 -142734703 - AluSx SINE Alu -10 302 1 2521 194 29 45 chrX 19865678 19866236 -142733694 - MER44D DNA MER2_type -1 604 1 286 276 80 120 chrX 19866315 19866841 -142733089 + L2 LINE L2 1366 1870 -1444 2225 108 0 29 chrX 19867122 19867437 -142732493 + AluSx SINE Alu 1 306 -6 348 278 23 68 chrX 19867652 19867753 -142732177 + MIR3 SINE MIR 59 154 -54 610 162 19 199 chrX 19867753 19867907 -142732023 + MER5B DNA MER1_type 2 108 -70 2270 104 0 3 chrX 19867907 19868205 -142731725 - AluSx SINE Alu -15 297 1 610 162 19 199 chrX 19868205 19868266 -142731664 + MER5B DNA MER1_type 108 178 0 348 278 23 68 chrX 19868266 19868297 -142731633 + MIR3 SINE MIR 154 185 -23 1844 150 13 38 chrX 19868958 19869272 -142730658 - AluJo SINE Alu -6 306 1 1974 158 3 6 chrX 19869739 19870050 -142729880 - AluJb SINE Alu -2 310 1 979 126 0 0 chrX 19870050 19870185 -142729745 - AluJb SINE Alu -177 135 1 2179 102 0 7 chrX 19871173 19871457 -142728473 + AluSx SINE Alu 1 282 -30 210 312 45 52 chrX 19871615 19871769 -142728161 - MER5A DNA MER1_type -23 166 14 610 232 140 0 chrX 19874477 19874641 -142725289 + MER5A DNA MER1_type 3 189 0 613 256 63 5 chrX 19874645 19875052 -142724878 + LTR16C LTR ERVL 42 491 0 755 309 21 4 chrX 19875864 19876100 -142723830 + MIR SINE MIR 3 242 -20 966 167 0 0 chrX 19876347 19876497 -142723433 - FRAM SINE Alu -19 157 8 829 144 7 22 chrX 19876567 19876706 -142723224 - FLAM_C SINE Alu -6 137 1 1022 203 6 0 chrX 19876814 19876991 -142722939 - MER5A DNA MER1_type -6 183 6 381 374 104 14 chrX 19877078 19877334 -142722596 - L3 LINE CR1 -67 1510 1224 2301 119 0 0 chrX 19877334 19877646 -142722284 - AluSx SINE Alu 0 312 1 381 374 104 14 chrX 19877646 19877678 -142722252 - L3 LINE CR1 -353 1224 1196 964 233 5 5 chrX 19877719 19877929 -142722001 - MIR SINE MIR -44 218 9 958 205 22 0 chrX 19877929 19878114 -142721816 + MER5A DNA MER1_type 1 189 0 707 272 47 93 chrX 19878127 19878535 -142721395 - L3 LINE CR1 -428 1149 761 481 257 112 76 chrX 19878577 19878833 -142721097 - L1ME4a LINE L1 -22 6099 5819 2234 92 0 3 chrX 19878833 19879116 -142720814 + AluSx SINE Alu 1 282 -30 481 257 112 76 chrX 19879116 19879306 -142720624 - L1ME4a LINE L1 -302 5819 5637 346 342 80 5 chrX 19879530 19879717 -142720213 - L3 LINE CR1 -979 598 398 421 98 0 0 chrX 19879987 19880048 -142719882 - L1MB5 LINE L1 0 6174 6114 1635 130 8 4 chrX 19880049 19880302 -142719628 + L1MA4A LINE L1 6048 6301 -2 1737 174 16 6 chrX 19880306 19880623 -142719307 - L1MB5 LINE L1 -46 6128 5809 406 272 160 30 chrX 19880890 19881059 -142718871 + MIR SINE MIR 56 246 -16 1215 231 56 92 chrX 19881223 19882031 -142717899 - L1MC5 LINE L1 -25 7936 7252 774 148 55 82 chrX 19882055 19882193 -142717737 + MER5B DNA MER1_type 1 134 -44 2143 125 0 16 chrX 19882193 19882497 -142717433 + AluSx SINE Alu 1 299 -13 774 148 55 82 chrX 19882497 19882541 -142717389 + MER5B DNA MER1_type 134 178 0 1158 201 55 65 chrX 19882552 19882986 -142716944 - L1MC5 LINE L1 -733 7228 6799 2264 126 0 0 chrX 19883401 19883704 -142716226 + AluSx SINE Alu 3 306 -1 198 0 0 0 chrX 19883704 19883726 -142716204 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 826 208 128 42 chrX 19884878 19885206 -142714724 - MLT1H1 LTR MaLR 0 555 185 2425 133 27 27 chrX 19885217 19885631 -142714299 - L1MA7 LINE L1 -9 6282 5869 2342 63 3 30 chrX 19886329 19886630 -142713300 + AluSx SINE Alu 1 293 -19 26 0 0 0 chrX 19886990 19887016 -142712914 + AT_rich Low_complexity Low_complexity 1 26 0 248 152 22 0 chrX 19887016 19887062 -142712868 - MER5B DNA MER1_type -128 50 4 538 207 171 55 chrX 19887076 19887240 -142712690 - MER5A DNA MER1_type 0 189 7 964 233 15 5 chrX 19887247 19887453 -142712477 - MER58A DNA MER1_type 0 224 17 301 325 0 0 chrX 19887447 19887524 -142712406 - MER58A DNA MER1_type -25 82 6 * 26 50 0 0 chrX 19888902 19888942 -142710988 + AT_rich Low_complexity Low_complexity 1 40 0 443 305 30 64 chrX 19888967 19889200 -142710730 + MIR SINE MIR 21 245 -17 978 256 52 21 chrX 19889443 19889732 -142710198 + L1ME3 LINE L1 5834 6131 -31 1993 131 28 0 chrX 19889858 19890148 -142709782 - AluJo SINE Alu -14 298 1 21 0 0 0 chrX 19890987 19891008 -142708922 + AT_rich Low_complexity Low_complexity 1 21 0 258 98 0 0 chrX 19891012 19891053 -142708877 + L1MA3 LINE L1 6265 6305 0 526 294 5 72 chrX 19891268 19891304 -142708626 - MER5A DNA MER1_type -7 182 145 1318 167 19 9 chrX 19891304 19891520 -142708410 + MER20 DNA MER1_type 2 219 0 526 294 5 72 chrX 19891520 19891677 -142708253 - MER5A DNA MER1_type -44 145 2 2099 123 0 0 chrX 19891792 19892076 -142707854 - AluSx SINE Alu -28 284 1 30 45 0 0 chrX 19892572 19892616 -142707314 + AT_rich Low_complexity Low_complexity 1 44 0 752 192 27 20 chrX 19892720 19892866 -142707064 - MER58A DNA MER1_type -1 223 77 360 250 132 0 chrX 19892884 19893020 -142706910 - MER34 LTR ERV1 -14 528 375 250 223 82 52 chrX 19893235 19893380 -142706550 - MER34B LTR ERV1 -434 131 10 344 149 119 30 chrX 19893381 19893448 -142706482 - MER58A DNA MER1_type -34 73 1 2128 128 0 13 chrX 19893735 19894047 -142705883 - AluSx SINE Alu -4 308 1 836 176 0 0 chrX 19894074 19894205 -142705725 + AluSq/x SINE Alu 1 131 -182 183 361 16 0 chrX 19896034 19896095 -142703835 - L2 LINE L2 -21 3292 3231 412 276 0 9 chrX 19896121 19896226 -142703704 + MER58B DNA MER1_type 4 107 -234 835 188 14 0 chrX 19896229 19896357 -142703573 + BC200 scRNA scRNA 2 134 -66 225 0 0 0 chrX 19896357 19896382 -142703548 + (CAA)n Simple_repeat Simple_repeat 2 26 0 835 188 14 0 chrX 19896382 19896397 -142703533 + BC200 scRNA scRNA 134 147 -53 1202 156 34 30 chrX 19896410 19896647 -142703283 + MER58B DNA MER1_type 104 341 0 258 192 0 0 chrX 19896736 19896788 -142703142 - MIR SINE MIR -114 148 97 2728 71 21 63 chrX 19896947 19897131 -142702799 - THE1B LTR MaLR 0 364 203 2352 103 3 3 chrX 19897131 19897442 -142702488 + AluSq SINE Alu 1 311 -2 2728 71 21 63 chrX 19897442 19897637 -142702293 - THE1B LTR MaLR -161 203 1 2121 119 7 14 chrX 19897716 19898011 -142701919 + AluSx SINE Alu 1 293 -19 1009 170 12 0 chrX 19898141 19898306 -142701624 + AluSg/x SINE Alu 134 300 -12 231 289 58 39 chrX 19899404 19899508 -142700422 - MIR SINE MIR -4 258 153 325 275 71 87 chrX 19899553 19899816 -142700114 - MLT1J LTR MaLR -7 504 238 1066 148 81 34 chrX 19899816 19900025 -142699905 + MER20 DNA MER1_type 1 219 0 325 275 71 87 chrX 19900025 19900177 -142699753 - MLT1J LTR MaLR -273 238 95 243 0 0 0 chrX 19900177 19900204 -142699726 + (TTG)n Simple_repeat Simple_repeat 1 27 0 325 275 71 87 chrX 19900204 19900292 -142699638 - MLT1J LTR MaLR -416 95 7 198 269 0 19 chrX 19900298 19900350 -142699580 - MIR SINE MIR -150 112 62 337 192 0 14 chrX 19900717 19900790 -142699140 - LTR33A LTR ERVL -8 515 444 200 125 50 0 chrX 19901508 19901548 -142698382 + T-rich Low_complexity Low_complexity 2 43 0 730 284 63 8 chrX 19902092 19902331 -142697599 - LTR16A1 LTR ERVL -1 456 205 1143 196 9 13 chrX 19902678 19902903 -142697027 - MER58A DNA MER1_type 0 224 1 250 426 33 15 chrX 19903044 19903316 -142696614 + L2 LINE L2 2638 2914 -400 5070 136 31 57 chrX 19903395 19904344 -142695586 - L1MA8 LINE L1 -27 6264 5334 2037 146 0 16 chrX 19904344 19904659 -142695271 - AluJo SINE Alu -2 310 1 5070 136 31 57 chrX 19904659 19904795 -142695135 - L1MA8 LINE L1 -957 5334 5196 237 319 138 9 chrX 19904796 19904912 -142695018 + L2 LINE L2 2957 3087 -185 209 222 0 0 chrX 19905045 19905081 -142694849 + L2 LINE L2 3219 3254 -18 335 339 28 50 chrX 19906278 19906458 -142693472 - MIR SINE MIR -50 212 37 649 270 26 26 chrX 19906594 19906820 -142693110 + MIR SINE MIR 13 238 -24 308 156 31 0 chrX 19906970 19907034 -142692896 - LTR33A LTR ERVL -16 507 442 852 302 36 0 chrX 19907195 19907443 -142692487 + MIR SINE MIR 1 257 -5 1702 118 42 64 chrX 19907941 19908298 -142691632 - THE1C LTR MaLR 0 375 27 428 231 180 55 chrX 19909186 19909662 -142690268 - LTR33A LTR ERVL -20 503 2 266 0 0 29 chrX 19909876 19909911 -142690019 + (TG)n Simple_repeat Simple_repeat 2 35 0 605 62 0 0 chrX 19910365 19910445 -142689485 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chrX 19911296 19911325 -142688605 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 19911365 19911393 -142688537 + AT_rich Low_complexity Low_complexity 1 28 0 2297 106 0 7 chrX 19912213 19912515 -142687415 - AluSx SINE Alu -12 300 1 21 36 0 0 chrX 19912655 19912683 -142687247 + AT_rich Low_complexity Low_complexity 1 28 0 2159 121 10 0 chrX 19912970 19913267 -142686663 + AluSx SINE Alu 1 300 -12 282 56 0 0 chrX 19913267 19913303 -142686627 + (TA)n Simple_repeat Simple_repeat 2 37 0 273 215 84 9 chrX 19913659 19913766 -142686164 - L1ME LINE L1 -289 5877 5763 376 237 102 17 chrX 19915845 19915963 -142683967 - MIR SINE MIR -2 260 133 235 119 0 0 chrX 19916092 19916134 -142683796 - L1MDb LINE L1 -5085 1562 1521 27 29 0 0 chrX 19916154 19916188 -142683742 + AT_rich Low_complexity Low_complexity 1 34 0 2448 72 17 20 chrX 19916192 19916538 -142683392 - L1PB1 LINE L1 -1 6150 5806 613 223 79 66 chrX 19916538 19916856 -142683074 - L1MDb LINE L1 -5214 1332 1011 290 219 13 139 chrX 19917022 19917259 -142682671 - L1MDb LINE L1 -5667 875 669 6017 125 24 3 chrX 19917359 19919200 -142680730 - L1MA3 LINE L1 -10 7714 5308 1811 158 41 12 chrX 19919198 19919457 -142680473 - L1MA3 LINE L1 -7203 362 89 * 270 0 0 0 chrX 19919457 19919487 -142680443 + (TG)n Simple_repeat Simple_repeat 1 30 0 1811 158 41 12 chrX 19919487 19919569 -142680361 - L1MA3 LINE L1 -7476 89 11 352 330 50 28 chrX 19919693 19919911 -142680019 - L1MDb LINE L1 -6304 238 16 246 229 0 136 chrX 19922266 19922384 -142677546 - MER102a DNA MER1_type -8 322 221 822 242 142 96 chrX 19922502 19922621 -142677309 - MLT1F1 LTR MaLR -8 559 447 2266 107 3 0 chrX 19922621 19922920 -142677010 - AluSx SINE Alu -12 300 1 822 242 142 96 chrX 19922920 19923334 -142676596 - MLT1F1 LTR MaLR -120 447 1 2852 198 19 3 chrX 19923911 19924501 -142675429 - MLT1E2 LTR MaLR 0 626 28 311 218 264 0 chrX 19924803 19924913 -142675017 + MIR SINE MIR 119 257 -5 455 210 0 0 chrX 19925143 19925224 -142674706 - FRAM/FAM SINE Alu -97 88 8 588 214 15 8 chrX 19925319 19925450 -142674480 + MER58D DNA MER1_type 1 132 -254 5163 64 16 30 chrX 19925482 19926218 -142673712 - L1MA2 LINE L1 -3 6301 5576 497 129 0 11 chrX 19926226 19926319 -142673611 + MER58D DNA MER1_type 125 216 -170 874 157 0 0 chrX 19926319 19926453 -142673477 + FLAM_C SINE Alu 1 134 -9 797 128 104 6 chrX 19926454 19926618 -142673312 + MER58D DNA MER1_type 207 386 0 346 219 88 53 chrX 19926666 19926780 -142673150 - MIR3 SINE MIR -25 183 66 25 0 0 28 chrX 19927866 19927886 -142672044 + AT_rich Low_complexity Low_complexity 1 21 -14 1986 144 0 26 chrX 19927886 19928192 -142671738 - AluSx SINE Alu -14 298 1 25 0 0 28 chrX 19928192 19928207 -142671723 + AT_rich Low_complexity Low_complexity 21 35 0 516 268 106 62 chrX 19928212 19928396 -142671534 + L1ME3 LINE L1 5459 5633 -533 803 231 33 6 chrX 19928396 19928578 -142671352 + MER5A DNA MER1_type 3 189 0 516 268 106 62 chrX 19928578 19928781 -142671149 + L1ME3 LINE L1 5633 5863 -303 614 198 23 52 chrX 19928956 19929128 -142670802 + L2 LINE L2 2061 2227 -1087 1363 252 61 32 chrX 19929146 19929622 -142670308 + L2 LINE L2 2574 3061 -252 33 43 0 0 chrX 19930015 19930062 -142669868 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chrX 19930311 19930340 -142669590 + AT_rich Low_complexity Low_complexity 1 29 0 517 295 107 17 chrX 19930363 19930812 -142669118 - L1ME3 LINE L1 -211 5951 5452 228 313 68 20 chrX 19931903 19932050 -142667880 + MIR SINE MIR 77 230 -32 2291 95 0 3 chrX 19932176 19932472 -142667458 + AluSx SINE Alu 1 295 -17 800 213 101 41 chrX 19932492 19932759 -142667171 + L1ME3 LINE L1 5836 6123 -39 2013 151 0 7 chrX 19932759 19933058 -142666872 + AluJo SINE Alu 1 297 -15 800 213 101 41 chrX 19933058 19933093 -142666837 + L1ME3 LINE L1 6123 6154 -8 903 153 77 0 chrX 19933210 19933380 -142666550 - MER58A DNA MER1_type 0 224 42 187 342 13 13 chrX 19933999 19934075 -142665855 - MIR3 SINE MIR -21 187 112 1887 223 95 6 chrX 19934133 19934608 -142665322 + MLT1F LTR MaLR 26 542 0 902 240 20 0 chrX 19934663 19934859 -142665071 + MIR SINE MIR 4 203 -59 34 72 0 0 chrX 19934883 19934952 -142664978 + AT_rich Low_complexity Low_complexity 1 69 0 290 139 73 0 chrX 19934952 19935089 -142664841 + (TA)n Simple_repeat Simple_repeat 1 147 0 305 309 64 0 chrX 19935105 19935199 -142664731 + MIR SINE MIR 161 260 -2 184 287 55 118 chrX 19935198 19935564 -142664366 - L2 LINE L2 -92 3180 2838 * 2823 85 3 0 chrX 19935662 19936025 -142663905 - THE1B LTR MaLR 0 364 1 2993 144 48 6 chrX 19936235 19936736 -142663194 + Tigger7 DNA MER2_type 1 522 -1965 443 165 0 25 chrX 19936757 19936836 -142663094 + Tigger7 DNA MER2_type 2415 2491 0 710 284 69 9 chrX 19936931 19937149 -142662781 - MIR SINE MIR -31 231 1 2398 106 0 0 chrX 19937191 19937503 -142662427 + AluSx SINE Alu 1 312 0 2043 124 0 26 chrX 19938041 19938347 -142661583 - AluSx SINE Alu -12 300 3 596 270 93 29 chrX 19939030 19939374 -142660556 - L1ME4a LINE L1 -233 5888 5523 635 192 134 35 chrX 19939720 19939892 -142660038 + MER5A DNA MER1_type 1 189 0 596 207 0 0 chrX 19939945 19940056 -142659874 - MER81 DNA DNA -2 112 2 588 204 62 51 chrX 19940785 19940961 -142658969 - MER5B DNA MER1_type 0 178 1 426 224 7 30 chrX 19940980 19941127 -142658803 - MER5A DNA MER1_type 0 189 4 233 253 242 10 chrX 19941378 19941477 -142658453 + L2 LINE L2 3138 3259 -13 227 129 65 0 chrX 19942505 19942567 -142657363 + (TTA)n Simple_repeat Simple_repeat 2 67 0 676 301 84 35 chrX 19943219 19943565 -142656365 - L2 LINE L2 -5 3308 2946 703 120 7 14 chrX 19944609 19944751 -142655179 - Charlie5 DNA MER1_type -121 2491 2351 1396 56 0 0 chrX 19944751 19944930 -142655000 - L1PA6 LINE L1 0 6154 5976 429 237 84 32 chrX 19945213 19945403 -142654527 - L1MC4a LINE L1 -1914 5894 5695 940 177 44 0 chrX 19945432 19945613 -142654317 + MER5A DNA MER1_type 1 189 0 342 287 104 18 chrX 19946221 19946385 -142653545 - L1MC4a LINE L1 -1829 5979 5802 515 93 6 74 chrX 19946523 19946685 -142653245 + (TCCC)n Simple_repeat Simple_repeat 3 153 0 198 156 0 0 chrX 19946805 19946850 -142653080 + A-rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chrX 19947686 19947719 -142652211 + AT_rich Low_complexity Low_complexity 1 33 0 5326 191 19 9 chrX 19948071 19948553 -142651377 - MER45B DNA AcHobo -545 1036 560 2497 113 23 0 chrX 19948553 19948907 -142651023 - THE1B LTR MaLR 0 364 3 5326 191 19 9 chrX 19948907 19949449 -142650481 - MER45B DNA AcHobo -1021 560 2 191 363 148 13 chrX 19950138 19950455 -142649475 - L2 LINE L2 -342 2972 2613 581 202 8 0 chrX 19950724 19950848 -142649082 - LTR16C LTR ERVL -8 483 359 2198 174 68 33 chrX 19950865 19951347 -142648583 - MLT1D LTR MaLR -6 499 1 1002 246 108 25 chrX 19951348 19951673 -142648257 - LTR16C LTR ERVL -139 352 1 216 295 0 13 chrX 19951825 19951903 -142648027 + MIR3 SINE MIR 132 208 0 324 286 140 35 chrX 19952234 19952405 -142647525 + L3 LINE CR1 985 1173 -404 432 90 0 13 chrX 19952556 19952634 -142647296 - L1MA1 LINE L1 -252 6050 5974 841 314 64 37 chrX 19952678 19953086 -142646844 + L3 LINE CR1 1158 1576 -1 2255 84 3 20 chrX 19953342 19953684 -142646246 - AluSp SINE Alu 0 313 1 221 281 62 42 chrX 19954620 19954716 -142645214 - L2 LINE L2 -47 3266 3169 603 247 152 64 chrX 19954761 19955292 -142644638 - MLT1H LTR MaLR -15 534 1 365 267 0 29 chrX 19955587 19955692 -142644238 - MIR3 SINE MIR -7 201 100 417 263 20 0 chrX 19956044 19956143 -142643787 + U4 snRNA snRNA 3 103 -42 2258 86 0 0 chrX 19956475 19956781 -142643149 - AluSc SINE Alu 0 306 1 225 247 41 41 chrX 19957491 19957564 -142642366 + L2 LINE L2 3234 3306 -7 496 241 129 0 chrX 19958682 19958798 -142641132 + MER5A DNA MER1_type 1 131 -58 792 256 88 17 chrX 19959209 19959447 -142640483 + MIR SINE MIR 8 262 0 270 247 152 124 chrX 19959632 19959810 -142640120 - MIR SINE MIR -78 184 2 1609 177 47 14 chrX 19960327 19960604 -142639326 + AluJo SINE Alu 1 286 -26 260 121 69 69 chrX 19960718 19960776 -142639154 + MIR SINE MIR 7 64 -198 551 226 244 68 chrX 19960809 19960859 -142639071 - LTR16A1 LTR ERVL -9 448 408 2038 122 0 0 chrX 19960859 19961147 -142638783 - AluSx SINE Alu -24 288 1 551 226 244 68 chrX 19961147 19961477 -142638453 - LTR16A1 LTR ERVL -49 408 1 192 202 111 101 chrX 19961477 19961576 -142638354 + MIR SINE MIR 109 208 -54 1826 166 52 75 chrX 19961747 19962188 -142637742 - MLT1D LTR MaLR 0 505 75 450 136 0 0 chrX 19962258 19962324 -142637606 - MLT1D LTR MaLR -431 74 9 1392 202 26 16 chrX 19962347 19962654 -142637276 - MER58B DNA MER1_type -16 325 16 29120 99 16 41 chrX 19965605 19972165 -142627765 - L1PA7 LINE L1 -13 6456 11 1760 169 39 11 chrX 19972224 19972579 -142627351 - MLT1A1 LTR MaLR 0 365 1 1126 206 37 0 chrX 19973420 19973634 -142626296 + MER58A DNA MER1_type 3 224 0 293 130 270 70 chrX 19974738 19974838 -142625092 - MLT1I LTR MaLR -6 403 284 864 72 65 72 chrX 19974868 19975006 -142624924 + AluSx SINE Alu 1 137 -176 31460 104 13 37 chrX 19975007 19981304 -142618626 + L1PA7 LINE L1 12 6147 -7 1342 113 0 0 chrX 19981304 19981489 -142618441 + AluSx SINE Alu 121 305 -7 494 242 0 53 chrX 19981626 19981758 -142618172 - MLT1I LTR MaLR -236 173 49 977 218 97 7 chrX 19984128 19984417 -142615513 + L1ME3 LINE L1 5837 6151 -11 180 299 60 0 chrX 19984558 19984625 -142615305 + MIR SINE MIR 94 164 -98 288 0 0 0 chrX 19986073 19986105 -142613825 + (TG)n Simple_repeat Simple_repeat 2 33 0 321 26 0 0 chrX 19986320 19986358 -142613572 + (TA)n Simple_repeat Simple_repeat 2 39 0 208 373 90 22 chrX 19988579 19988713 -142611217 - L2 LINE L2 -2 3270 3128 2660 43 0 0 chrX 19989184 19989484 -142610446 + AluY SINE Alu 1 300 -11 889 251 136 18 chrX 19989854 19990185 -142609745 - MLT1J2 LTR MaLR -51 399 30 226 290 198 37 chrX 19991284 19991446 -142608484 - MIR SINE MIR -14 248 61 623 275 79 5 chrX 19991679 19991868 -142608062 - MIR SINE MIR -12 250 48 4126 147 29 23 chrX 19992150 19992609 -142607321 - L1MA8 LINE L1 -3 6288 5833 216 0 0 0 chrX 19992609 19992633 -142607297 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2494 21 0 0 chrX 19992633 19992916 -142607014 - AluY SINE Alu -28 283 1 4126 147 29 23 chrX 19992916 19993247 -142606683 - L1MA8 LINE L1 -457 5834 5492 21 0 0 0 chrX 19993485 19993506 -142606424 + AT_rich Low_complexity Low_complexity 1 21 0 325 311 132 55 chrX 19994272 19994507 -142605423 + L2 LINE L2 2720 2972 -342 219 186 0 0 chrX 19994614 19994657 -142605273 + CT-rich Low_complexity Low_complexity 4 46 0 1742 182 0 22 chrX 19994713 19995026 -142604904 + AluJo SINE Alu 1 306 -6 1510 275 104 10 chrX 19995137 19995830 -142604100 - L2 LINE L2 -1 3312 2556 2341 91 3 0 chrX 19996030 19996327 -142603603 - AluSx SINE Alu -13 299 2 376 291 34 30 chrX 19996337 19996602 -142603328 - L1ME LINE L1 -301 5820 5555 1783 152 11 4 chrX 19996826 19997102 -142602828 + AluJb SINE Alu 1 278 -34 207 100 0 0 chrX 19997102 19997132 -142602798 + (TAAG)n Simple_repeat Simple_repeat 2 31 0 3646 65 4 12 chrX 19997249 19997739 -142602191 + L1PA7 LINE L1 5665 6150 -4 2361 188 123 94 chrX 19998264 19998592 -142601338 + L1ME3A LINE L1 5293 5610 -560 333 194 0 0 chrX 19998592 19998659 -142601271 - MER116 DNA Mariner -13 67 1 2361 188 123 94 chrX 19998659 19999117 -142600813 + L1ME3A LINE L1 5610 6170 0 183 304 27 76 chrX 19999296 19999480 -142600450 - L2 LINE L2 -182 3090 2916 * 287 313 138 27 chrX 19999471 19999842 -142600088 - L2 LINE L2 -359 2955 2544 27 0 0 0 chrX 20001674 20001701 -142598229 + AT_rich Low_complexity Low_complexity 1 27 0 2057 98 0 0 chrX 20001794 20002058 -142597872 + AluY SINE Alu 1 264 -47 23 33 0 0 chrX 20002263 20002293 -142597637 + AT_rich Low_complexity Low_complexity 1 30 0 332 241 66 91 chrX 20002413 20002654 -142597276 + L1M4 LINE L1 4022 4256 -1890 385 308 31 56 chrX 20002923 20003209 -142596721 + L1M4 LINE L1 4945 5223 -923 4370 219 27 4 chrX 20003386 20004391 -142595539 - L1P LINE L1 -3180 2966 1939 258 32 0 0 chrX 20005533 20005564 -142594366 + (TG)n Simple_repeat Simple_repeat 1 31 0 3672 161 50 1 chrX 20005876 20006578 -142593352 + L1MA4 LINE L1 5273 6008 -292 294 164 30 0 chrX 20006595 20006662 -142593268 + L1MB3 LINE L1 6087 6155 -28 21 36 0 0 chrX 20006663 20006691 -142593239 + AT_rich Low_complexity Low_complexity 1 28 0 1359 233 11 7 chrX 20007091 20007378 -142592552 - AluJo SINE Alu -14 288 1 23 0 0 0 chrX 20007812 20007835 -142592095 + AT_rich Low_complexity Low_complexity 1 23 0 241 259 157 38 chrX 20007864 20008049 -142591881 - L1MC4a LINE L1 -1879 5929 5723 2761 134 14 5 chrX 20008179 20008597 -142591333 + MSTA LTR MaLR 7 428 0 293 146 0 0 chrX 20009109 20009164 -142590766 - MLT2A2 LTR ERVL 0 453 399 213 226 0 0 chrX 20009164 20009217 -142590713 + (TA)n Simple_repeat Simple_repeat 2 54 0 328 188 16 0 chrX 20009217 20009281 -142590649 - MLT2A2 LTR ERVL -40 413 349 837 205 98 55 chrX 20009807 20010153 -142589777 + Charlie4a DNA MER1_type 80 440 -68 8323 33 4 0 chrX 20011895 20012902 -142587028 - L1P LINE L1 -1039 5107 4097 305 311 85 45 chrX 20014102 20014279 -142585651 + HAL1 LINE L1 1733 1916 -591 30 45 0 0 chrX 20014900 20014944 -142584986 + AT_rich Low_complexity Low_complexity 1 44 0 363 333 70 9 chrX 20016008 20016202 -142583728 - MIR SINE MIR -57 205 1 511 119 163 88 chrX 20016452 20016612 -142583318 + MLT1C LTR MaLR 4 175 -292 595 176 49 0 chrX 20016614 20016716 -142583214 + FLAM_C SINE Alu 1 107 -36 3230 199 0 58 chrX 20016816 20017384 -142582546 + L1P3 LINE L1 1018 1509 -4942 2004 142 30 0 chrX 20017384 20017687 -142582243 + AluSq SINE Alu 1 312 -1 3230 199 0 58 chrX 20017687 20017937 -142581993 + L1P3 LINE L1 1509 1772 -4679 281 230 40 0 chrX 20018398 20018472 -142581458 - MIR SINE MIR -111 151 75 2104 81 0 11 chrX 20018873 20019156 -142580774 + AluY SINE Alu 1 280 -31 523 202 89 16 chrX 20019268 20019392 -142580538 - THE1C LTR MaLR -241 134 2 25 51 0 0 chrX 20019653 20019692 -142580238 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chrX 20019870 20019899 -142580031 + AT_rich Low_complexity Low_complexity 1 29 0 818 201 74 0 chrX 20020684 20020953 -142578977 + MER114 LTR ERV 214 502 -146 24 0 0 0 chrX 20021165 20021189 -142578741 + AT_rich Low_complexity Low_complexity 1 24 0 2524 163 34 0 chrX 20021201 20021642 -142578288 - LTR51 LTR ERV1 -34 637 182 598 198 69 0 chrX 20021669 20021785 -142578145 - LTR51 LTR ERV1 -547 124 1 5072 166 10 24 chrX 20022020 20023029 -142576901 + L1 LINE L1 3603 4597 -1549 195 289 61 62 chrX 20023344 20023452 -142576478 - MIR SINE MIR -67 141 45 932 185 4 88 chrX 20024550 20024777 -142575153 - LTR8A LTR ERV1 -486 241 34 23 0 0 0 chrX 20025423 20025446 -142574484 + AT_rich Low_complexity Low_complexity 1 23 0 534 304 73 85 chrX 20025622 20026116 -142573814 - L1MEd LINE L1 -5029 1090 603 209 182 0 0 chrX 20026873 20026906 -142573024 + (TG)n Simple_repeat Simple_repeat 1 33 0 1578 124 36 0 chrX 20027037 20027287 -142572643 - MLT1B LTR MaLR 0 390 132 996 232 45 68 chrX 20027421 20027865 -142572065 + L1ME2 LINE L1 5662 6095 -69 185 0 40 0 chrX 20027999 20028024 -142571906 + (TA)n Simple_repeat Simple_repeat 2 27 0 616 194 14 0 chrX 20028288 20028427 -142571503 - L1MA2 LINE L1 -3 6301 6161 284 114 0 0 chrX 20028833 20028877 -142571053 - L1MA9 LINE L1 -33 6279 6236 6243 93 2 0 chrX 20029876 20030758 -142569172 - L1P LINE L1 -1430 4716 3833 1990 114 0 0 chrX 20030756 20031053 -142568877 - L1P LINE L1 -3602 2544 2248 * 205 278 56 22 chrX 20031285 20031375 -142568555 + MIR SINE MIR 30 122 -140 873 301 83 57 chrX 20031511 20032113 -142567817 + L2 LINE L2 1735 2352 -962 1774 218 49 43 chrX 20032673 20033183 -142566747 - MER74A LTR ERVL 0 558 46 619 313 68 47 chrX 20034448 20035061 -142564869 - L1M4 LINE L1 -1488 4546 3921 873 142 196 0 chrX 20035262 20035466 -142564464 - L1MA8 LINE L1 -27 6264 6021 245 216 0 0 chrX 20035500 20035551 -142564379 - AluJ/monomer SINE Alu -1 307 257 910 350 2 28 chrX 20035899 20036328 -142563602 - L1M4 LINE L1 -5537 418 1 249 242 15 0 chrX 20036330 20036396 -142563534 - L1MEc LINE L1 -3844 2371 2305 34 55 0 0 chrX 20036580 20036635 -142563295 + AT_rich Low_complexity Low_complexity 1 55 0 465 313 139 9 chrX 20036855 20037085 -142562845 - L1MEc LINE L1 -4574 1822 1563 673 186 54 0 chrX 20037089 20037218 -142562712 - THE1B LTR MaLR 0 364 229 35 54 0 0 chrX 20037369 20037425 -142562505 + AT_rich Low_complexity Low_complexity 1 56 0 264 298 0 39 chrX 20037636 20037656 -142562274 + MLT1I LTR MaLR 283 302 -107 370 160 53 0 chrX 20037656 20037731 -142562199 + MER116 DNA Mariner 2 80 0 264 298 0 39 chrX 20037731 20037814 -142562116 + MLT1I LTR MaLR 302 382 -27 430 145 34 51 chrX 20037961 20038078 -142561852 - L1MA4A LINE L1 -6 6297 6183 2410 84 0 0 chrX 20038083 20038391 -142561539 - AluY SINE Alu -3 308 1 598 195 25 8 chrX 20038400 20038518 -142561412 - FLAM_C SINE Alu -18 125 6 980 143 14 0 chrX 20038826 20038973 -142560957 + AluSg/x SINE Alu 145 293 -19 24 0 0 0 chrX 20039009 20039033 -142560897 + AT_rich Low_complexity Low_complexity 1 24 0 1339 244 58 25 chrX 20039038 20039490 -142560440 + L1MB8 LINE L1 5706 6171 -7 22 0 0 0 chrX 20041358 20041380 -142558550 + AT_rich Low_complexity Low_complexity 1 22 0 210 114 91 0 chrX 20041473 20041517 -142558413 + (TATTG)n Simple_repeat Simple_repeat 3 50 0 260 282 147 32 chrX 20043614 20043770 -142556160 + MIR SINE MIR 2 175 -87 274 262 0 0 chrX 20044189 20044250 -142555680 + MER4-int LTR ERV1 1101 1161 -5437 185 395 32 8 chrX 20044536 20044660 -142555270 + L3 LINE CR1 353 479 -1098 1563 197 130 19 chrX 20045958 20046390 -142553540 + MER21B LTR ERV1 375 854 -9 5512 156 17 40 chrX 20046721 20047790 -142552140 - THE1C-int LTR MaLR -531 1049 3 1126 177 80 47 chrX 20047792 20048091 -142551839 - THE1C LTR MaLR 0 375 67 289 291 103 0 chrX 20048191 20048308 -142551622 + MLT1D LTR MaLR 198 326 -179 1157 231 44 18 chrX 20048577 20048970 -142550960 + MER54B LTR ERVL 488 793 0 405 155 7 50 chrX 20048970 20049116 -142550814 + MLT1D LTR MaLR 322 505 0 1101 225 100 14 chrX 20049116 20049405 -142550525 + MLT1E2 LTR MaLR 271 584 -42 211 311 44 121 chrX 20049489 20049737 -142550193 + L2 LINE L2 2992 3220 -52 847 180 0 0 chrX 20050031 20050170 -142549760 + AluJo SINE Alu 1 139 -173 1663 161 0 18 chrX 20050271 20050550 -142549380 + AluJb SINE Alu 22 295 -17 492 151 21 11 chrX 20051661 20051754 -142548176 - MLT1B LTR MaLR -11 379 286 384 77 0 0 chrX 20053600 20053652 -142546278 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 239 227 64 0 chrX 20054330 20054440 -142545490 - L1M4 LINE L1 -2915 3231 3115 26 64 0 0 chrX 20055427 20055474 -142544456 + AT_rich Low_complexity Low_complexity 1 47 0 2836 208 72 63 chrX 20057911 20059154 -142540776 + L1MDa LINE L1 2390 3646 -2894 1027 227 10 75 chrX 20059315 20059610 -142540320 + MLT2B1 LTR ERVL 1 276 -244 1925 110 11 18 chrX 20061843 20062116 -142537814 + AluSx SINE Alu 34 304 -8 225 274 71 19 chrX 20063277 20063489 -142536441 + L1MDa LINE L1 2331 2553 -3987 1004 266 78 56 chrX 20063500 20064228 -142535702 - L1M4 LINE L1 -1494 4652 3909 358 239 0 6 chrX 20064312 20064401 -142535529 - L1M4 LINE L1 -2265 3881 3797 22 70 0 0 chrX 20064799 20064842 -142535088 + AT_rich Low_complexity Low_complexity 1 43 0 389 212 0 0 chrX 20064994 20065060 -142534870 + MER2 DNA MER2_type 278 343 -2 279 275 0 0 chrX 20065075 20065166 -142534764 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 598 198 28 23 chrX 20065732 20065909 -142534021 - MER45R DNA AcHobo 0 1581 1404 436 173 87 0 chrX 20066040 20066144 -142533786 - MER45 DNA AcHobo -1387 194 82 1331 174 20 69 chrX 20066263 20066654 -142533276 - L1M4 LINE L1 -2272 3874 3503 285 265 152 15 chrX 20066790 20066922 -142533008 - MIR SINE MIR -17 245 96 22 80 0 0 chrX 20067643 20067693 -142532237 + AT_rich Low_complexity Low_complexity 1 50 0 1860 183 66 8 chrX 20068607 20069077 -142530853 + L1MB2 LINE L1 5673 6169 -2 838 207 25 5 chrX 20069302 20069500 -142530430 + Tigger1 DNA MER2_type 2216 2417 -1 1627 268 72 10 chrX 20069510 20070480 -142529450 + L1MDa LINE L1 2971 4000 -2540 228 86 0 0 chrX 20070498 20070533 -142529397 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2248 75 0 0 chrX 20070535 20070813 -142529117 - AluY SINE Alu -33 278 1 3213 93 8 41 chrX 20070936 20071114 -142528816 - THE1B-int LTR MaLR -1083 497 315 1782 163 0 11 chrX 20071114 20071391 -142528539 + AluSx SINE Alu 1 274 -38 873 29 0 0 chrX 20071392 20071496 -142528434 + (GAAA)n Simple_repeat Simple_repeat 1 104 0 3213 93 8 41 chrX 20071496 20071829 -142528101 - THE1B-int LTR MaLR -1264 316 1 2142 120 50 36 chrX 20071829 20072188 -142527742 - THE1B LTR MaLR 0 364 1 1887 170 3 3 chrX 20072188 20072565 -142527365 - L1P LINE L1 -1624 4522 4146 521 298 67 22 chrX 20072863 20073309 -142526621 + L1ME LINE L1 3463 3941 -2205 1197 264 40 14 chrX 20073310 20074095 -142525835 + L1ME LINE L1 4710 5514 -648 803 201 6 6 chrX 20074101 20074275 -142525655 + MER3 DNA MER1_type 6 179 -30 228 244 0 101 chrX 20074372 20074491 -142525439 + L1ME LINE L1 5634 5740 -424 7065 104 15 3 chrX 20074617 20076448 -142523482 + L1PA7 LINE L1 4305 6154 0 423 286 52 9 chrX 20076448 20076791 -142523139 + L1M4 LINE L1 3085 3442 -2704 1409 159 5 9 chrX 20076799 20077019 -142522911 + AluSx SINE Alu 1 219 -93 14760 50 0 1 chrX 20077119 20079075 -142520855 + L1P LINE L1 2000 3954 -2192 636 229 54 0 chrX 20079231 20079397 -142520533 - L1 LINE L1 -2439 3707 3533 342 0 0 0 chrX 20080883 20080921 -142519009 + (CA)n Simple_repeat Simple_repeat 1 38 0 2780 119 35 12 chrX 20081078 20081662 -142518268 - MER4E LTR ERV1 -4 762 1 257 316 0 0 chrX 20081948 20082005 -142517925 + L2 LINE L2 3255 3311 -2 1624 140 105 21 chrX 20082448 20082733 -142517197 - AluJb SINE Alu -3 309 1 4445 107 32 15 chrX 20084607 20085263 -142514667 - L1P3 LINE L1 -5124 751 79 425 83 0 14 chrX 20085263 20085335 -142514595 + (TTA)n Simple_repeat Simple_repeat 2 72 0 4445 107 32 15 chrX 20085335 20085416 -142514514 - L1P3 LINE L1 -5796 79 1 16167 95 6 1 chrX 20086063 20088500 -142511430 - L1P LINE L1 -813 5333 2885 1817 103 11 40 chrX 20089646 20089919 -142510011 - AluY SINE Alu -6 305 41 15601 58 1 3 chrX 20090757 20092818 -142507112 + L1P LINE L1 227 2282 -3864 21 0 0 0 chrX 20093044 20093065 -142506865 + AT_rich Low_complexity Low_complexity 1 21 0 246 366 40 5 chrX 20093377 20093601 -142506329 + HAL1 LINE L1 1430 1661 -846 280 284 0 11 chrX 20093723 20093818 -142506112 + (TA)n Simple_repeat Simple_repeat 2 95 0 26 50 0 0 chrX 20094012 20094052 -142505878 + AT_rich Low_complexity Low_complexity 1 40 0 221 219 0 0 chrX 20094387 20094428 -142505502 + (TG)n Simple_repeat Simple_repeat 2 42 0 2524 102 3 0 chrX 20094973 20095327 -142504603 - THE1A LTR MaLR 0 355 1 7194 106 9 5 chrX 20095327 20096379 -142503551 - THE1A-int LTR MaLR 0 1580 525 313 279 18 0 chrX 20096479 20096590 -142503340 - L1MD3 LINE L1 -155 7840 7728 4792 167 25 23 chrX 20096605 20097393 -142502537 - L1PA15 LINE L1 -13 6152 5367 1889 123 69 4 chrX 20097393 20097670 -142502260 - AluSq SINE Alu -12 301 7 4792 167 25 23 chrX 20097670 20097897 -142502033 - L1PA15 LINE L1 -798 5367 5142 1644 150 90 0 chrX 20097897 20098163 -142501767 - AluJb SINE Alu -16 296 7 4792 167 25 23 chrX 20098163 20098914 -142501016 - L1PA15 LINE L1 -1023 5142 4379 688 310 45 39 chrX 20099515 20099896 -142500034 + MER110 LTR ERV1 102 484 -7 960 202 120 13 chrX 20100001 20100234 -142499696 + MLT1F1 LTR MaLR 310 567 0 227 173 19 0 chrX 20100499 20100551 -142499379 + CT-rich Low_complexity Low_complexity 2 54 0 1374 208 72 14 chrX 20100551 20101019 -142498911 - AluJo SINE Alu 0 312 1 11304 96 9 13 chrX 20101432 20103016 -142496914 - THE1B-int LTR MaLR 0 1580 3 2261 136 8 22 chrX 20103017 20103386 -142496544 - THE1B LTR MaLR 0 364 1 720 84 0 0 chrX 20103623 20103718 -142496212 - AluSc SINE Alu -63 246 152 215 282 70 0 chrX 20104138 20104209 -142495721 - MIR3 SINE MIR -23 185 110 252 241 0 0 chrX 20104915 20104973 -142494957 + L3 LINE CR1 403 460 -1117 183 345 21 48 chrX 20105139 20105284 -142494646 + L3 LINE CR1 667 807 -770 515 301 122 21 chrX 20105527 20105953 -142493977 + L3 LINE CR1 1032 1500 -77 1106 143 0 12 chrX 20106148 20106316 -142493614 - AluSg SINE Alu -144 166 1 2156 94 0 17 chrX 20106784 20107099 -142492831 + AluY SINE Alu 1 310 0 2107 109 7 0 chrX 20107210 20107526 -142492404 + AluSp SINE Alu 2 319 0 280 262 66 49 chrX 20108781 20108903 -142491027 - MLT1F1 LTR MaLR -49 518 395 213 225 0 0 chrX 20109249 20109289 -142490641 + (CA)n Simple_repeat Simple_repeat 2 41 0 728 232 0 0 chrX 20109928 20110070 -142489860 + FRAM SINE Alu 5 146 -30 22 56 0 0 chrX 20110071 20110107 -142489823 + AT_rich Low_complexity Low_complexity 1 36 0 1518 194 0 0 chrX 20110177 20110429 -142489501 + AluJb SINE Alu 1 252 -60 751 206 24 30 chrX 20110854 20111019 -142488911 + FRAM SINE Alu 1 164 -2 24 32 0 0 chrX 20111019 20111050 -142488880 + AT_rich Low_complexity Low_complexity 1 31 0 620 112 43 3 chrX 20111420 20111622 -142488308 + LTR26 LTR ERV1 1 256 -347 893 146 0 14 chrX 20111622 20111766 -142488164 - FLAM_C SINE Alu 0 143 2 1964 183 0 55 chrX 20111767 20112149 -142487781 + LTR26 LTR ERV1 243 603 0 327 25 0 0 chrX 20112457 20112497 -142487433 + (TG)n Simple_repeat Simple_repeat 1 40 0 491 327 22 54 chrX 20112525 20112803 -142487127 + MLT1G LTR MaLR 16 284 -306 1840 173 36 0 chrX 20113670 20114006 -142485924 - MER7A DNA MER2_type 0 346 1 578 234 42 26 chrX 20114594 20114786 -142485144 + L1ME3 LINE L1 5959 6153 -9 2620 23 7 3 chrX 20114811 20115116 -142484814 + AluY SINE Alu 1 306 -5 203 0 0 36 chrX 20116110 20116138 -142483792 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1017 211 42 87 chrX 20117642 20118013 -142481917 + MLT2B1 LTR ERVL 5 364 -50 380 20 20 0 chrX 20118102 20118151 -142481779 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 2188 94 0 27 chrX 20118156 20118453 -142481477 - AluSg SINE Alu -21 289 1 238 0 26 51 chrX 20118453 20118492 -142481438 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 218 310 11 11 chrX 20118614 20118701 -142481229 + (TA)n Simple_repeat Simple_repeat 1 87 0 462 291 107 10 chrX 20118837 20119033 -142480897 - LTR33A LTR ERVL -157 366 152 1434 254 58 69 chrX 20119352 20119801 -142480129 + MER45B DNA AcHobo 1 444 -596 2135 133 3 0 chrX 20119803 20120112 -142479818 + AluSx SINE Alu 3 312 0 223 288 38 12 chrX 20121483 20121563 -142478367 - L2 LINE L2 -5 3308 3227 1170 228 62 46 chrX 20121799 20122167 -142477763 - MLT1A2 LTR MaLR 0 374 1 181 390 24 0 chrX 20122342 20122424 -142477506 - MIR SINE MIR -60 148 65 290 223 36 18 chrX 20122614 20122726 -142477204 + (TA)n Simple_repeat Simple_repeat 1 114 0 1053 236 16 42 chrX 20122729 20123038 -142476892 - L1MA9 LINE L1 -51 6261 5961 588 198 32 0 chrX 20123040 20123166 -142476764 + L1M2 LINE L1 5407 5536 -776 369 231 120 8 chrX 20123478 20123595 -142476335 + MER53 DNA DNA 1 130 -59 * 380 242 137 6 chrX 20123494 20123655 -142476275 - MER53 DNA DNA -7 182 1 289 220 0 0 chrX 20123836 20123895 -142476035 + L1MC5 LINE L1 6702 6760 -1201 650 217 0 109 chrX 20124174 20124404 -142475526 + L1MB8 LINE L1 2513 2717 -3429 2262 261 61 37 chrX 20126496 20127117 -142472813 + L1MB8 LINE L1 3497 4150 -1996 290 45 23 0 chrX 20127117 20127161 -142472769 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2262 261 61 37 chrX 20127161 20127483 -142472447 + L1MB8 LINE L1 4150 4463 -1683 1164 241 25 55 chrX 20127490 20127925 -142472005 + L1MB8 LINE L1 5757 6178 0 1364 270 42 48 chrX 20127946 20128657 -142471273 - L1M4 LINE L1 -912 5234 4528 352 118 101 109 chrX 20128668 20128787 -142471143 + L1M4 LINE L1 5514 5631 -553 3153 94 0 7 chrX 20128895 20129340 -142470590 - THE1B-int LTR MaLR -1138 442 1 2070 148 34 14 chrX 20129340 20129697 -142470233 - THE1B LTR MaLR 0 364 1 1631 260 66 51 chrX 20130427 20131798 -142468132 + L1ME1 LINE L1 4742 6142 -24 22 35 0 0 chrX 20132099 20132128 -142467802 + AT_rich Low_complexity Low_complexity 1 29 0 239 276 76 35 chrX 20132184 20132329 -142467601 + L1ME4a LINE L1 5527 5677 -444 * 1543 250 53 9 chrX 20132328 20132880 -142467050 - L1ME LINE L1 -396 5768 5190 1566 122 31 11 chrX 20132910 20133197 -142466733 - L1MA9 LINE L1 -27 6285 5993 323 208 65 48 chrX 20133228 20133396 -142466534 + L1ME4a LINE L1 5713 5883 -238 200 35 35 0 chrX 20133630 20133659 -142466271 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1470 159 21 46 chrX 20133663 20133946 -142465984 - AluJb SINE Alu -36 276 1 21 0 0 0 chrX 20134241 20134262 -142465668 + AT_rich Low_complexity Low_complexity 1 21 0 455 390 20 17 chrX 20134654 20134949 -142464981 + L2 LINE L2 2430 2725 -589 519 297 45 77 chrX 20136510 20136847 -142463083 + MLT1K LTR MaLR 162 483 -105 2192 172 6 94 chrX 20136847 20137359 -142462571 + LTR24 LTR ERV1 1 467 0 519 297 45 77 chrX 20137359 20137462 -142462468 + MLT1K LTR MaLR 483 588 0 1644 186 41 17 chrX 20138224 20138618 -142461312 - MER67C LTR ERV1 -243 271 1 35 71 0 0 chrX 20138618 20138688 -142461242 + AT_rich Low_complexity Low_complexity 1 70 0 2880 111 12 7 chrX 20139140 20139572 -142460358 - MER57B LTR ERV1 0 434 1 1047 209 0 47 chrX 20139603 20139838 -142460092 + AluJo SINE Alu 1 224 -88 30 59 0 0 chrX 20139965 20140016 -142459914 + AT_rich Low_complexity Low_complexity 1 51 0 2282 118 0 0 chrX 20140325 20140631 -142459299 - AluSc SINE Alu 0 309 4 2106 90 0 0 chrX 20142044 20142310 -142457620 - AluSg SINE Alu -11 299 34 3211 127 10 4 chrX 20143135 20143649 -142456281 - L1PB1 LINE L1 0 6151 5635 6819 68 9 7 chrX 20144635 20145748 -142454182 + L1PA8 LINE L1 5058 6172 0 236 366 65 0 chrX 20145806 20145929 -142454001 + MIR SINE MIR 23 153 -109 338 301 109 11 chrX 20145982 20146165 -142453765 - MIR SINE MIR -8 254 54 1866 97 0 0 chrX 20346611 20346848 -142253082 - AluSq SINE Alu -76 237 1 269 354 142 0 chrX 20346849 20346976 -142252954 + L2 LINE L2 2616 2760 -554 542 158 0 0 chrX 20347061 20347143 -142252787 + L2 LINE L2 3231 3312 -1 246 257 132 7 chrX 20348250 20348394 -142251536 + L1P5 LINE L1 5290 5451 -700 314 250 196 0 chrX 20348516 20348664 -142251266 + L1ME LINE L1 5672 5848 -273 2508 48 0 16 chrX 20348795 20349108 -142250822 + AluY SINE Alu 1 308 -3 667 85 23 100 chrX 20349547 20349677 -142250253 + FLAM_C SINE Alu 20 139 -4 250 191 0 0 chrX 20349677 20349740 -142250190 + L1MC4 LINE L1 6641 6703 -1339 264 30 0 0 chrX 20349745 20349778 -142250152 + (TA)n Simple_repeat Simple_repeat 2 34 0 1219 112 12 6 chrX 20349778 20349947 -142249983 + AluJb SINE Alu 121 290 -22 474 340 54 13 chrX 20350600 20350915 -142249015 + L1MC/D LINE L1 4937 5264 -882 841 185 76 54 chrX 20350980 20351164 -142248766 - MER58A DNA MER1_type -34 190 3 446 279 37 83 chrX 20351166 20351504 -142248426 + L1MC/D LINE L1 5259 5582 -539 250 106 21 0 chrX 20352505 20352552 -142247378 + L1MB7 LINE L1 6128 6175 -9 195 42 0 0 chrX 20352692 20352716 -142247214 + (GA)n Simple_repeat Simple_repeat 2 25 0 291 319 129 9 chrX 20353728 20353844 -142246086 - L2 LINE L2 -2 3270 3141 2285 100 0 0 chrX 20356550 20356850 -142243080 - AluSx SINE Alu -12 300 1 2415 78 3 3 chrX 20358250 20358557 -142241373 + AluSq SINE Alu 1 307 -6 1964 145 54 44 chrX 20358565 20358924 -142241006 + L1MB7 LINE L1 5738 6103 -81 1821 175 3 0 chrX 20358924 20359232 -142240698 + AluJb SINE Alu 1 309 -3 1964 145 54 44 chrX 20359232 20359278 -142240652 + L1MB7 LINE L1 6103 6147 -37 2258 106 0 0 chrX 20361052 20361344 -142238586 - AluSx SINE Alu -20 292 1 24 0 0 0 chrX 20361677 20361701 -142238229 + AT_rich Low_complexity Low_complexity 1 24 0 2235 108 3 7 chrX 20361911 20362216 -142237714 - AluSx SINE Alu -2 310 7 181 338 0 15 chrX 20362764 20362832 -142237098 + L2 LINE L2 3127 3193 -79 723 224 97 73 chrX 20363090 20363349 -142236581 - Charlie8 DNA MER1_type -2152 265 1 250 273 13 39 chrX 20363569 20363646 -142236284 + MIR3 SINE MIR 94 168 -40 329 209 0 11 chrX 20364161 20364179 -142235751 + (CA)n Simple_repeat Simple_repeat 2 19 -72 2396 69 0 13 chrX 20364179 20364483 -142235447 + AluSx SINE Alu 1 300 -12 329 209 0 11 chrX 20364483 20364555 -142235375 + (CA)n Simple_repeat Simple_repeat 19 91 0 703 110 0 0 chrX 20365697 20365797 -142234133 - HY3 scRNA scRNA -1 100 1 801 230 157 73 chrX 20366558 20367132 -142232798 + L1MC5 LINE L1 7260 7881 -80 22 35 0 0 chrX 20367433 20367462 -142232468 + AT_rich Low_complexity Low_complexity 1 29 0 2052 82 75 0 chrX 20368266 20368545 -142231385 - AluSq SINE Alu -13 300 1 2212 99 0 29 chrX 20370565 20370878 -142229052 + AluSg SINE Alu 1 304 -6 228 143 32 16 chrX 20371036 20371099 -142228831 - L1M4 LINE L1 -1116 5030 4967 245 169 13 52 chrX 20371100 20371177 -142228753 - L1M4 LINE L1 -1127 5019 4946 564 294 116 55 chrX 20371373 20371457 -142228473 - L1M4 LINE L1 -1459 4687 4610 2230 89 40 7 chrX 20371457 20371759 -142228171 - AluSx SINE Alu 0 312 1 564 294 116 55 chrX 20371759 20372259 -142227671 - L1M4 LINE L1 -1536 4610 4067 738 157 0 0 chrX 20372399 20372551 -142227379 + FLAM_C SINE Alu 1 152 0 1955 145 0 10 chrX 20373332 20373635 -142226295 + AluJb SINE Alu 13 312 0 1807 167 3 7 chrX 20373671 20373964 -142225966 - AluSx SINE Alu -20 292 1 1921 85 4 4 chrX 20374008 20374291 -142225639 + AluSq SINE Alu 39 321 0 1904 105 12 53 chrX 20375205 20375528 -142224402 - AluJb SINE Alu 0 312 3 347 246 9 8 chrX 20375530 20375655 -142224275 + L1MC4 LINE L1 1998 6985 -1337 2424 37 0 20 chrX 20375680 20375980 -142223950 - AluY SINE Alu -17 294 1 808 238 9 14 chrX 20376053 20376263 -142223667 - MER63A DNA MER1_type 0 210 2 339 320 129 7 chrX 20376372 20376519 -142223411 + MLT1J LTR MaLR 250 414 -97 840 163 50 19 chrX 20376782 20376942 -142222988 - FRAM SINE Alu -8 168 4 378 275 128 47 chrX 20376959 20377347 -142222583 - L1MC4a LINE L1 -311 5810 5448 1926 114 10 24 chrX 20378079 20378377 -142221553 - AluSx SINE Alu -18 294 1 1892 167 3 0 chrX 20378387 20378692 -142221238 - AluJb SINE Alu -5 307 2 582 156 16 62 chrX 20378692 20378809 -142221121 - MER20 DNA MER1_type -22 197 85 21 36 0 0 chrX 20379308 20379336 -142220594 + AT_rich Low_complexity Low_complexity 1 28 0 855 106 21 42 chrX 20379437 20379579 -142220351 - AluSq/x SINE Alu -174 139 1 1869 170 3 0 chrX 20379589 20379895 -142220035 - AluJb SINE Alu -4 308 2 620 147 16 62 chrX 20379895 20380013 -142219917 - MER20 DNA MER1_type -22 197 84 1065 45 0 15 chrX 20382638 20382771 -142217159 - AluSg/x SINE Alu -15 297 167 2159 109 0 3 chrX 20382771 20383064 -142216866 + AluSx SINE Alu 1 292 -20 317 259 86 50 chrX 20384032 20384252 -142215678 - L1MDa LINE L1 -3892 2648 2421 267 265 69 10 chrX 20384267 20384369 -142215561 - HAL1 LINE L1 -147 2360 2253 256 132 0 0 chrX 20384553 20384591 -142215339 + MLT2F LTR ERVL 619 656 -7 22 0 0 0 chrX 20384778 20384800 -142215130 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chrX 20385261 20385307 -142214623 + AT_rich Low_complexity Low_complexity 1 46 0 30 0 0 0 chrX 20387998 20388028 -142211902 + AT_rich Low_complexity Low_complexity 1 30 0 286 265 143 37 chrX 20388047 20388292 -142211638 - L1ME4a LINE L1 -57 6064 5794 472 284 55 70 chrX 20388395 20388454 -142211476 + MIR SINE MIR 8 66 -196 2330 33 39 43 chrX 20388454 20388759 -142211171 - AluY SINE Alu -7 304 1 472 284 55 70 chrX 20388759 20388956 -142210974 + MIR SINE MIR 66 260 -2 433 110 110 0 chrX 20389340 20389413 -142210517 + L1MC1 LINE L1 6107 6187 -146 418 45 136 0 chrX 20389416 20389482 -142210448 + L1MC1 LINE L1 6259 6333 0 1978 78 3 54 chrX 20389795 20390089 -142209841 - AluY SINE Alu 0 311 33 2129 98 4 0 chrX 20390089 20390366 -142209564 - AluSq SINE Alu -35 278 1 479 304 37 5 chrX 20390379 20390596 -142209334 - L1ME4a LINE L1 -298 5823 5600 217 345 112 28 chrX 20391362 20391611 -142208319 + L2 LINE L2 2384 2653 -661 2276 81 3 0 chrX 20391834 20392150 -142207780 + AluSp SINE Alu 1 317 0 366 244 24 0 chrX 20392187 20392269 -142207661 + MIR SINE MIR 63 146 -116 21 36 0 0 chrX 20393010 20393038 -142206892 + AT_rich Low_complexity Low_complexity 1 28 0 450 157 0 0 chrX 20393150 20393233 -142206697 + GA-rich Low_complexity Low_complexity 1 83 0 26 64 0 0 chrX 20393752 20393799 -142206131 + AT_rich Low_complexity Low_complexity 1 47 0 990 214 34 40 chrX 20393841 20393979 -142205951 - L1M4 LINE L1 -2718 3428 3291 1954 150 0 3 chrX 20393979 20394273 -142205657 - AluJb SINE Alu -19 293 1 990 214 34 40 chrX 20394273 20394342 -142205588 - L1M4 LINE L1 -2855 3291 3223 1975 119 18 0 chrX 20394342 20394671 -142205259 - AluSx SINE Alu 0 334 1 990 214 34 40 chrX 20394671 20394811 -142205119 - L1M4 LINE L1 -2923 3223 3081 1013 207 54 10 chrX 20395522 20395725 -142204205 + MER58C DNA MER1_type 4 215 0 964 161 157 80 chrX 20395732 20396031 -142203899 - MER33 DNA MER1_type 0 324 3 22 0 0 0 chrX 20396049 20396071 -142203859 + AT_rich Low_complexity Low_complexity 1 22 0 716 132 9 0 chrX 20396878 20396984 -142202946 - FLAM_A SINE Alu -35 107 1 1869 166 0 10 chrX 20397072 20397367 -142202563 - AluJo SINE Alu -20 292 1 551 242 149 12 chrX 20397371 20397532 -142202398 - MER5A DNA MER1_type 0 189 7 370 256 91 8 chrX 20397538 20397659 -142202271 - MIR SINE MIR -55 207 77 477 278 172 0 chrX 20398114 20398265 -142201665 + MER5A DNA MER1_type 13 189 0 399 175 170 37 chrX 20399210 20399285 -142200645 - L1ME2 LINE L1 -1 6163 6099 192 40 0 0 chrX 20399285 20399310 -142200620 + (TA)n Simple_repeat Simple_repeat 2 26 0 399 175 170 37 chrX 20399310 20399493 -142200437 - L1ME2 LINE L1 -65 6099 5843 922 187 41 0 chrX 20399617 20399788 -142200142 + MER5B DNA MER1_type 1 178 0 21 95 0 0 chrX 20400344 20400407 -142199523 + AT_rich Low_complexity Low_complexity 1 63 0 2113 127 0 3 chrX 20400605 20400905 -142199025 - AluSx SINE Alu -13 299 1 28 48 0 0 chrX 20401593 20401635 -142198295 + AT_rich Low_complexity Low_complexity 1 42 0 500 146 0 10 chrX 20401641 20401737 -142198193 + L1MA8 LINE L1 6192 6286 -5 583 251 112 78 chrX 20401854 20402212 -142197718 - MLT1I LTR MaLR 0 409 40 4187 94 39 93 chrX 20402236 20402629 -142197301 - MER4A LTR ERV1 0 664 324 2180 98 3 49 chrX 20402629 20402955 -142196975 + AluSq SINE Alu 1 311 -2 4187 94 39 93 chrX 20402955 20403263 -142196667 - MER4A LTR ERV1 -340 324 1 1835 158 6 19 chrX 20403283 20403599 -142196331 - AluJo SINE Alu 0 312 1 408 294 196 8 chrX 20404724 20404979 -142194951 - L1MDa LINE L1 -4594 1535 1233 608 244 108 112 chrX 20404990 20405444 -142194486 - LTR33A LTR ERVL -6 517 66 791 244 42 48 chrX 20405538 20405591 -142194339 - L1MDa LINE L1 -4886 1233 1181 1610 143 63 66 chrX 20405591 20405892 -142194038 - AluJo SINE Alu -12 300 1 791 244 42 48 chrX 20405892 20406110 -142193820 - L1MDa LINE L1 -4938 1181 962 2404 92 0 3 chrX 20406110 20406416 -142193514 - AluSx SINE Alu -7 305 1 791 244 42 48 chrX 20406416 20406479 -142193451 - L1MDa LINE L1 -5157 962 900 240 125 0 0 chrX 20406486 20406518 -142193412 - U2 snRNA snRNA -156 32 1 711 269 128 12 chrX 20406522 20406857 -142193073 - L1MDa LINE L1 -5192 927 554 603 307 4 70 chrX 20406886 20406922 -142193008 + L3 LINE CR1 980 1017 -560 2257 242 42 44 chrX 20406922 20407516 -142192414 + MLT1E LTR MaLR 1 593 0 603 307 4 70 chrX 20407516 20407723 -142192207 + L3 LINE CR1 1017 1207 -370 2817 169 54 18 chrX 20458024 20458528 -142141402 - MER21B LTR ERV1 -1 862 341 617 113 21 0 chrX 20458522 20458619 -142141311 - MER21B LTR ERV1 -635 228 130 * 445 294 77 14 chrX 20458728 20458871 -142141059 + L2 LINE L2 3121 3272 0 488 177 262 0 chrX 20459864 20460005 -142139925 + Charlie4 DNA MER1_type 1 178 -1783 653 232 52 31 chrX 20460007 20460201 -142139729 + MIR SINE MIR 16 213 -49 3168 131 8 23 chrX 20460914 20461388 -142138542 - MLT1C LTR MaLR 0 467 1 953 204 5 10 chrX 20462775 20462971 -142136959 - MER58A DNA MER1_type 0 224 30 250 323 0 0 chrX 20464430 20464529 -142135401 + GA-rich Low_complexity Low_complexity 3 101 0 358 263 53 32 chrX 20464831 20464926 -142135004 + MER91A DNA MER1_type 56 152 -44 2361 102 3 0 chrX 20464934 20465237 -142134693 - AluSq SINE Alu -9 304 1 210 271 0 43 chrX 20465317 20465387 -142134543 - L2 LINE L2 -21 3292 3226 1122 141 11 31 chrX 20465604 20465795 -142134135 + MER20 DNA MER1_type 33 219 0 920 241 68 65 chrX 20465832 20466010 -142133920 + LTR16C LTR ERVL 167 348 -143 1901 152 3 16 chrX 20466010 20466325 -142133605 - AluJb SINE Alu 0 312 2 920 241 68 65 chrX 20466325 20466470 -142133460 + LTR16C LTR ERVL 348 491 0 433 356 79 0 chrX 20466470 20466686 -142133244 + L2 LINE L2 3040 3272 0 220 304 319 11 chrX 20467045 20467236 -142132694 - MIR SINE MIR -6 256 7 36 23 0 0 chrX 20467346 20467389 -142132541 + AT_rich Low_complexity Low_complexity 1 43 0 2298 155 8 0 chrX 20467405 20467759 -142132171 - L1PB1 LINE L1 -13 6138 5782 233 200 0 0 chrX 20467759 20467814 -142132116 + L1MC4 LINE L1 6649 6703 -1339 216 163 0 0 chrX 20467816 20467859 -142132071 + (TA)n Simple_repeat Simple_repeat 2 44 0 250 48 48 0 chrX 20467866 20467908 -142132022 - LTR66 LTR ERVL -169 441 398 244 73 0 0 chrX 20467880 20467921 -142132009 + LTR66 LTR ERVL 400 440 -170 * 15243 179 9 18 chrX 20467933 20471683 -142128247 - L1P5 LINE L1 -376 6491 2778 7697 189 151 7 chrX 20471688 20473548 -142126382 - L1P5 LINE L1 -4602 2261 135 532 232 45 13 chrX 20473763 20473918 -142126012 - MER104 DNA Tc2 -14 166 7 1549 189 89 26 chrX 20474120 20474500 -142125430 + MLT1G LTR MaLR 13 416 -174 258 244 378 5 chrX 20474561 20474754 -142125176 - MLT1J2 LTR MaLR -41 409 145 658 205 305 4 chrX 20474756 20475005 -142124925 - MER5C DNA MER1_type 0 324 1 344 220 33 22 chrX 20475020 20475111 -142124819 - MLT1J1 LTR MaLR -311 135 44 279 0 0 0 chrX 20475240 20475271 -142124659 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2052 98 33 7 chrX 20475274 20475549 -142124381 - AluSx SINE Alu -30 282 1 704 265 152 81 chrX 20476115 20476537 -142123393 + LTR16A1 LTR ERVL 5 456 -1 184 280 0 0 chrX 20477185 20477235 -142122695 - MIR SINE MIR -18 244 195 185 318 53 40 chrX 20477289 20477440 -142122490 + L2 LINE L2 2429 2581 -733 4972 180 24 15 chrX 20477453 20478053 -142121877 + L1MB7 LINE L1 4613 5206 -978 2717 87 58 0 chrX 20478053 20478397 -142121533 + THE1B LTR MaLR 1 364 0 4972 180 24 15 chrX 20478397 20479335 -142120595 + L1MB7 LINE L1 5206 6161 -23 536 321 99 25 chrX 20480707 20481031 -142118899 - L1ME3A LINE L1 -312 5858 5511 458 259 139 24 chrX 20481590 20481756 -142118174 + MIR SINE MIR 8 192 -70 892 237 69 103 chrX 20481877 20482354 -142117576 + MLT1L LTR MaLR 145 605 -10 281 289 31 10 chrX 20482485 20482582 -142117348 + MIR SINE MIR 112 210 -52 2332 90 0 7 chrX 20482980 20483280 -142116650 - AluSx SINE Alu -9 303 6 1193 240 61 6 chrX 20483691 20484004 -142115926 - LTR16C LTR ERVL -2 489 160 381 138 0 0 chrX 20485227 20485285 -142114645 + MER116 DNA Mariner 22 79 -1 236 229 181 19 chrX 20488426 20488531 -142111399 - MIR SINE MIR -78 184 63 639 248 141 62 chrX 20490857 20491062 -142108868 + MIR SINE MIR 2 231 -31 2126 108 0 14 chrX 20491062 20491385 -142108545 + AluY SINE Alu 1 319 0 639 248 141 62 chrX 20491385 20491420 -142108510 + MIR SINE MIR 231 262 0 297 175 16 48 chrX 20492172 20492235 -142107695 - L2 LINE L2 -19 3253 3193 890 248 5 36 chrX 20492272 20492494 -142107436 + MIR SINE MIR 47 261 -1 291 209 47 35 chrX 20492615 20492701 -142107229 + MER103 DNA DNA 72 158 -8 226 313 50 0 chrX 20492904 20492984 -142106946 + MIR SINE MIR 118 201 -61 1444 182 9 0 chrX 20493323 20493543 -142106387 - MER58A DNA MER1_type 0 224 3 218 250 87 33 chrX 20493998 20494090 -142105840 + MIR3 SINE MIR 105 201 -7 317 371 0 32 chrX 20494201 20494325 -142105605 - MIR SINE MIR -142 120 1 25 31 0 0 chrX 20495067 20495099 -142104831 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chrX 20497209 20497229 -142102701 + (A)n Simple_repeat Simple_repeat 1 20 0 508 265 48 12 chrX 20497479 20497648 -142102282 + MIR SINE MIR 14 184 -62 228 298 71 12 chrX 20497771 20497855 -142102075 - MIR SINE MIR -64 144 56 595 223 90 18 chrX 20498328 20498494 -142101436 - MER104 DNA MER2_type -2 178 1 255 103 0 0 chrX 20500401 20500440 -142099490 + (ATTG)n Simple_repeat Simple_repeat 1 39 0 201 147 0 0 chrX 20500440 20500474 -142099456 + (TG)n Simple_repeat Simple_repeat 1 34 0 801 199 25 6 chrX 20503083 20503244 -142096686 + MIR SINE MIR 57 220 -42 888 250 94 24 chrX 20505002 20505290 -142094640 - LTR16B LTR ERVL -155 309 2 227 271 0 0 chrX 20507238 20507286 -142092644 - L2 LINE L2 -3 3310 3263 275 280 265 10 chrX 20507289 20507489 -142092441 - MIR SINE MIR -10 252 2 189 176 0 0 chrX 20510575 20510609 -142089321 - MER5C DNA MER1_type -290 34 1 1916 177 68 11 chrX 20510789 20511140 -142088790 - MLT1A2 LTR MaLR 0 374 4 735 244 4 9 chrX 20511816 20512041 -142087889 + L1M4 LINE L1 2430 2653 -3493 346 283 13 0 chrX 20512041 20512200 -142087730 + (TA)n Simple_repeat Simple_repeat 2 162 0 332 216 11 60 chrX 20512159 20512344 -142087586 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 * 238 289 26 6 chrX 20512344 20512500 -142087430 + (TA)n Simple_repeat Simple_repeat 1 159 0 1920 172 32 34 chrX 20512501 20512908 -142087022 + L1M4 LINE L1 2645 3050 -3096 239 279 58 78 chrX 20513280 20513434 -142086496 + MIR SINE MIR 111 261 -1 232 180 16 33 chrX 20513467 20513528 -142086402 - L1ME LINE L1 -217 5904 5845 1178 164 9 32 chrX 20514337 20514556 -142085374 + MER20 DNA MER1_type 6 219 0 572 312 34 21 chrX 20514958 20515195 -142084735 - MIR SINE MIR -12 250 11 231 307 118 63 chrX 20515395 20515522 -142084408 - L2 LINE L2 0 3272 3139 395 83 17 0 chrX 20515607 20515667 -142084263 + (GA)n Simple_repeat Simple_repeat 1 61 0 263 298 194 21 chrX 20516724 20516915 -142083015 - L2 LINE L2 0 3272 3049 286 283 120 0 chrX 20516995 20517087 -142082843 + MIR SINE MIR 49 151 -111 744 217 25 32 chrX 20517095 20517252 -142082678 + MER20 DNA MER1_type 14 169 -50 295 198 136 0 chrX 20517709 20517790 -142082140 + MIR SINE MIR 62 153 -109 260 172 17 0 chrX 20519462 20519520 -142080410 + (CA)n Simple_repeat Simple_repeat 2 60 0 607 333 42 62 chrX 20520303 20520556 -142079374 - L3 LINE CR1 -761 816 572 1036 199 5 26 chrX 20520556 20520747 -142079183 - MER5A DNA MER1_type -2 187 1 607 333 42 62 chrX 20520747 20520893 -142079037 - L3 LINE CR1 -1005 572 425 629 267 107 10 chrX 20520908 20521114 -142078816 - MIR SINE MIR 0 262 37 265 278 0 0 chrX 20521310 20521364 -142078566 + MER58 DNA MER1_type 1 54 -332 392 107 0 0 chrX 20521374 20521430 -142078500 - L1MD2 LINE L1 -22 6337 6282 1881 161 10 7 chrX 20521685 20521984 -142077946 - AluJb SINE Alu -12 300 1 241 242 155 68 chrX 20522155 20522316 -142077614 - MER5B DNA MER1_type -3 175 1 209 224 59 59 chrX 20522667 20522752 -142077178 - L3 LINE CR1 -1 1576 1492 318 264 73 18 chrX 20523279 20523315 -142076615 - MIR3 SINE MIR -12 196 163 2728 202 79 8 chrX 20523315 20523821 -142076109 - MLT1F LTR MaLR 0 542 1 318 264 73 18 chrX 20523821 20523894 -142076036 - MIR3 SINE MIR -45 163 81 2097 118 13 0 chrX 20524280 20524626 -142075304 - AluSx SINE Alu 0 350 1 180 302 0 0 chrX 20525773 20525826 -142074104 + L2 LINE L2 2706 2758 -556 558 324 37 89 chrX 20525941 20526290 -142073640 + L2 LINE L2 2912 3242 -30 2967 79 25 3 chrX 20526396 20526763 -142073167 - THE1C LTR MaLR 0 375 1 784 148 0 0 chrX 20526815 20526930 -142073000 + L1PB4 LINE L1 6039 6153 -3 433 285 134 0 chrX 20527288 20527460 -142072470 - MIR SINE MIR -24 238 44 946 173 22 76 chrX 20527941 20528166 -142071764 - MER20 DNA MER1_type -5 214 2 486 245 174 0 chrX 20528181 20528336 -142071594 + MER5A DNA MER1_type 7 188 -1 814 153 80 25 chrX 20528344 20528507 -142071423 - MER5B DNA MER1_type -2 176 5 180 77 0 0 chrX 20528534 20528560 -142071370 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 342 0 0 0 chrX 20528559 20528597 -142071333 + (CA)n Simple_repeat Simple_repeat 1 38 0 236 297 69 21 chrX 20528969 20529114 -142070816 + L1ME LINE L1 5267 5418 -2390 349 250 31 21 chrX 20529376 20529472 -142070458 + L1ME LINE L1 5710 5806 -315 322 290 11 0 chrX 20529593 20529686 -142070244 - MER103 DNA DNA -60 106 13 379 161 48 13 chrX 20529847 20529932 -142069998 + L1ME3 LINE L1 6070 6163 -1 2924 74 14 19 chrX 20530106 20530472 -142069458 + THE1B LTR MaLR 1 364 0 430 269 0 0 chrX 20530531 20530624 -142069306 + MIR SINE MIR 56 148 -60 21 0 0 0 chrX 20531393 20531414 -142068516 + AT_rich Low_complexity Low_complexity 1 21 0 191 111 0 0 chrX 20533011 20533038 -142066892 + L2 LINE L2 3263 3289 -24 2575 130 18 3 chrX 20533301 20533693 -142066237 - L1PB3 LINE L1 -3 6151 5754 279 356 69 0 chrX 20534330 20534431 -142065499 - L2 LINE L2 -18 3254 3147 1417 163 18 3 chrX 20534756 20535023 -142064907 + L1MB1 LINE L1 5712 5978 -190 531 156 31 0 chrX 20535031 20535127 -142064803 + L1MB1 LINE L1 6067 6165 -3 293 305 17 76 chrX 20535246 20535364 -142064566 + MIR SINE MIR 12 122 -140 337 209 10 11 chrX 20535490 20535577 -142064353 - MLT1J LTR MaLR -302 164 63 1271 231 147 48 chrX 20535853 20536351 -142063579 - MLT1H LTR MaLR -2 547 1 2245 140 67 45 chrX 20536613 20536836 -142063094 + L1MA9 LINE L1 5850 6067 -245 2553 112 27 6 chrX 20536836 20537201 -142062729 - THE1C LTR MaLR -1 374 2 2245 140 67 45 chrX 20537201 20537426 -142062504 + L1MA9 LINE L1 6067 6308 -4 22 35 0 0 chrX 20539091 20539120 -142060810 + AT_rich Low_complexity Low_complexity 1 29 0 271 284 0 0 chrX 20539520 20539587 -142060343 - L2 LINE L2 -5 3267 3201 207 0 0 0 chrX 20541260 20541283 -142058647 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 202 158 105 0 chrX 20741572 20741610 -141858320 + MER5A DNA MER1_type 127 168 -21 520 291 24 12 chrX 20741635 20741800 -141858130 - MER5B DNA MER1_type 0 178 12 24 0 0 0 chrX 20742737 20742761 -141857169 + AT_rich Low_complexity Low_complexity 1 24 0 2388 21 80 0 chrX 20742911 20743236 -141856694 - AluY SINE Alu 0 348 1 324 271 0 0 chrX 20744473 20744543 -141855387 + MER3 DNA MER1_type 5 74 -135 460 239 39 8 chrX 20744593 20744723 -141855207 + MER3 DNA MER1_type 76 209 0 428 267 18 11 chrX 20744744 20744881 -141855049 - MER5A DNA MER1_type -42 136 9 319 278 28 60 chrX 20745128 20745179 -141854751 + L1ME3A LINE L1 4476 4527 -1619 1127 30 0 0 chrX 20745179 20745311 -141854619 + L1PA3 LINE L1 6021 6152 -3 319 278 28 60 chrX 20745311 20745475 -141854455 + L1ME3A LINE L1 4527 4684 -1462 383 293 117 11 chrX 20746002 20746268 -141853662 + L1ME3A LINE L1 5318 5611 -559 1385 209 76 7 chrX 20746325 20746627 -141853303 - MER58B DNA MER1_type -15 326 4 203 233 178 0 chrX 20746639 20746712 -141853218 + MER5A DNA MER1_type 9 94 -95 228 160 80 0 chrX 20746832 20746882 -141853048 + L1ME3A LINE L1 5696 5749 -610 897 193 12 6 chrX 20746882 20747053 -141852877 + FRAM SINE Alu 1 171 -5 321 229 236 0 chrX 20747057 20747214 -141852716 + L1ME3A LINE L1 5745 5938 -232 2771 257 73 40 chrX 20747302 20748487 -141851443 + L1ME1 LINE L1 50 1274 -5122 * 2865 270 40 20 chrX 20748460 20749927 -141850003 + L1ME1 LINE L1 2064 3529 -2686 732 233 102 86 chrX 20749933 20750388 -141849542 + L1ME1 LINE L1 5752 6191 -44 207 0 0 0 chrX 20750335 20750358 -141849572 + (TA)n Simple_repeat Simple_repeat 2 24 0 457 233 93 13 chrX 20750358 20750433 -141849497 + L1MA10 LINE L1 6238 6332 -2 339 177 31 0 chrX 20750610 20750706 -141849224 + (TA)n Simple_repeat Simple_repeat 1 99 0 352 248 51 25 chrX 20750765 20750887 -141849043 - MLT1I LTR MaLR -255 154 31 28 29 0 0 chrX 20751030 20751065 -141848865 + AT_rich Low_complexity Low_complexity 1 35 0 239 378 15 25 chrX 20751382 20751583 -141848347 - MLT1K LTR MaLR -287 301 103 204 40 0 0 chrX 20751681 20751706 -141848224 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 2306 108 22 25 chrX 20752164 20752526 -141847404 + THE1B LTR MaLR 1 361 -3 10631 91 48 3 chrX 20752529 20754042 -141845888 + THE1B-int LTR MaLR 1 1580 0 653 88 53 79 chrX 20754042 20754156 -141845774 + THE1B LTR MaLR 1 111 -264 26 0 0 0 chrX 20754859 20754885 -141845045 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chrX 20755147 20755176 -141844754 + AT_rich Low_complexity Low_complexity 1 29 0 189 107 0 0 chrX 20756179 20756207 -141843723 + (CA)n Simple_repeat Simple_repeat 1 28 0 351 336 73 12 chrX 20756309 20756568 -141843362 - L1MC/D LINE L1 -2029 5779 5505 3145 129 13 4 chrX 20756654 20757126 -141842804 + LOR1a LTR ERV1 1 476 -21 1251 213 14 10 chrX 20757127 20757418 -141842512 + MER31-int LTR ERV1 949 1240 -3696 2049 232 33 108 chrX 20757869 20758879 -141841051 + MER31-int LTR ERV1 2477 3419 -1517 568 167 0 0 chrX 20759023 20759119 -141840811 - L1MA9 LINE L1 -411 5901 5806 435 353 99 60 chrX 20759129 20759616 -141840314 + L1PBb LINE L1 11 516 -6333 242 340 24 48 chrX 20759830 20760039 -141839891 + L1PBb LINE L1 777 980 -5869 450 288 0 0 chrX 20760484 20760616 -141839314 + L1PBb LINE L1 1335 1466 -5383 2680 143 40 6 chrX 20760616 20761085 -141838845 - L1M2 LINE L1 -574 5738 5254 7260 164 44 22 chrX 20761098 20761554 -141838376 + L1 LINE L1 3749 4193 -1953 306 0 0 0 chrX 20761554 20761588 -141838342 + (TA)n Simple_repeat Simple_repeat 1 34 0 7260 164 44 22 chrX 20761588 20762590 -141837340 + L1 LINE L1 4193 5239 -907 24 67 0 0 chrX 20763323 20763368 -141836562 + AT_rich Low_complexity Low_complexity 1 45 0 703 81 0 10 chrX 20764806 20764905 -141835025 + MER4A LTR ERV1 1 98 -566 1919 103 157 85 chrX 20764905 20765282 -141834648 + MER4A LTR ERV1 261 664 0 4769 70 46 0 chrX 20765467 20766098 -141833832 - PABL_A LTR ERV1 0 660 1 31280 93 20 15 chrX 20766098 20771087 -141828843 - PABL_A-int LTR ERV1 0 5015 1 5019 74 15 0 chrX 20771087 20771737 -141828193 - PABL_A LTR ERV1 0 660 1 592 233 37 60 chrX 20772165 20772274 -141827656 - L1MC5 LINE L1 -49 7912 7809 829 256 33 14 chrX 20772274 20772489 -141827441 + MER20 DNA MER1_type 1 219 0 592 233 37 60 chrX 20772489 20772594 -141827336 - L1MC5 LINE L1 -152 7809 7703 244 296 95 4 chrX 20772699 20772807 -141827123 + LTR33A LTR ERVL 39 162 -359 1535 235 34 20 chrX 20772923 20773332 -141826598 + MLT1C LTR MaLR 53 467 0 416 317 124 15 chrX 20773332 20773592 -141826338 + LTR33A LTR ERVL 225 513 -10 1293 193 5 0 chrX 20773869 20774087 -141825843 - MER58A DNA MER1_type -2 222 4 21 36 0 0 chrX 20775427 20775455 -141824475 + AT_rich Low_complexity Low_complexity 1 28 0 453 159 0 0 chrX 20776337 20776406 -141823524 - Tigger1 DNA MER2_type -1 2417 2349 5013 138 10 2 chrX 20776406 20777200 -141822730 - Tigger1 DNA MER2_type -190 2228 1429 9939 224 19 70 chrX 20777213 20781731 -141818199 + L1M2 LINE L1 28 4308 -2540 1963 91 36 4 chrX 20782216 20782517 -141817413 - AluY SINE Alu 0 310 1 252 256 68 45 chrX 20782853 20782986 -141816944 + L1M4 LINE L1 2576 2711 -3435 339 280 67 17 chrX 20783115 20783415 -141816515 + L1M4 LINE L1 2950 3264 -2882 1821 184 16 16 chrX 20783742 20784115 -141815815 - L1MB1 LINE L1 0 6168 5793 384 22 0 0 chrX 20784115 20784160 -141815770 + (TC)n Simple_repeat Simple_repeat 2 46 0 1821 184 16 16 chrX 20784160 20784173 -141815757 - L1MB1 LINE L1 -374 5794 5782 206 242 15 0 chrX 20784173 20784239 -141815691 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 988 206 5 5 chrX 20784240 20784439 -141815491 - L1MB1 LINE L1 -375 5793 5595 239 279 23 0 chrX 20784731 20784817 -141815113 + L1M2 LINE L1 4607 4694 -2154 272 139 35 26 chrX 20784825 20784940 -141814990 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 337 286 104 0 chrX 20784959 20785141 -141814789 + L1M2 LINE L1 4725 4925 -1923 502 321 151 50 chrX 20785206 20786089 -141813841 + L1M2 LINE L1 4975 5954 -894 1134 288 140 18 chrX 20786099 20786762 -141813168 + L1MC4a LINE L1 5273 6016 -1792 1964 113 78 0 chrX 20786765 20787049 -141812881 + AluSx SINE Alu 3 308 -4 1105 287 106 40 chrX 20787362 20788263 -141811667 + L1MC4 LINE L1 6409 7493 -395 452 232 46 20 chrX 20788232 20788383 -141811547 + L1MC5 LINE L1 7293 7447 -514 * 227 254 82 25 chrX 20788541 20788663 -141811267 + L1MC4 LINE L1 7759 7887 -155 216 86 0 0 chrX 20788676 20788711 -141811219 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chrX 20790070 20790091 -141809839 + AT_rich Low_complexity Low_complexity 1 21 0 353 320 79 108 chrX 20791120 20791473 -141808457 - L2 LINE L2 0 3272 2930 433 277 123 36 chrX 20792484 20792679 -141807251 - MIR SINE MIR 0 262 51 21 36 0 0 chrX 20794157 20794185 -141805745 + AT_rich Low_complexity Low_complexity 1 28 0 234 210 20 50 chrX 20795685 20795785 -141804145 + T-rich Low_complexity Low_complexity 3 99 0 23 33 0 0 chrX 20795865 20795895 -141804035 + AT_rich Low_complexity Low_complexity 1 30 0 3877 150 51 17 chrX 20797878 20798342 -141801588 + MER50 LTR ERV1 1 497 -237 2029 135 41 36 chrX 20798342 20798704 -141801226 - THE1B LTR MaLR 0 364 1 3877 150 51 17 chrX 20798704 20798927 -141801003 + MER50 LTR ERV1 497 711 -23 222 333 48 80 chrX 20798960 20799272 -141800658 - L2 LINE L2 -53 3219 2918 216 0 0 0 chrX 20799429 20799453 -141800477 + (T)n Simple_repeat Simple_repeat 1 24 0 181 50 25 50 chrX 20799471 20799511 -141800419 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 2183 114 0 0 chrX 20799770 20800067 -141799863 - AluSx SINE Alu -15 297 1 1082 178 27 13 chrX 20800186 20800411 -141799519 + L1MA9 LINE L1 6044 6271 -41 261 0 0 0 chrX 20800411 20800440 -141799490 + (TA)n Simple_repeat Simple_repeat 1 29 0 436 299 16 16 chrX 20801444 20801571 -141798359 + L2 LINE L2 3185 3311 -2 240 354 27 7 chrX 20801609 20801756 -141798174 - MIR SINE MIR -45 217 68 1516 238 159 13 chrX 20802080 20802626 -141797304 - MLT1E2 LTR MaLR 0 626 1 233 260 91 0 chrX 20803563 20803640 -141796290 - MLT1J2 LTR MaLR -52 398 315 3679 71 45 4 chrX 20803845 20804342 -141795588 + L1PA11 LINE L1 5649 6169 -5 243 0 0 0 chrX 20804342 20804369 -141795561 + (CTAA)n Simple_repeat Simple_repeat 3 29 0 276 30 0 0 chrX 20804505 20804538 -141795392 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 423 265 56 133 chrX 20804558 20805045 -141794885 - MLT1H LTR MaLR -109 446 2 814 225 0 11 chrX 20805415 20805578 -141794352 - L1MA4A LINE L1 -433 5870 5708 774 42 0 0 chrX 20805578 20805669 -141794261 + L1PA5 LINE L1 6052 6147 -7 814 225 0 11 chrX 20805669 20805687 -141794243 - L1MA4A LINE L1 -595 5708 5691 25 0 0 68 chrX 20805998 20806042 -141793888 + AT_rich Low_complexity Low_complexity 1 41 0 431 264 0 0 chrX 20806559 20806665 -141793265 - MIR SINE MIR 0 262 157 337 284 64 0 chrX 20806665 20806774 -141793156 - MER69 DNA AcHobo -1 2525 2410 4021 137 12 58 chrX 20806781 20807545 -141792385 - L1PA16 LINE L1 -16 6150 5422 280 200 0 0 chrX 20807713 20807758 -141792172 - MER69 DNA AcHobo -129 48 4 253 160 120 0 chrX 20807792 20807842 -141792088 - MIR SINE MIR -172 90 35 618 326 89 51 chrX 20808466 20808960 -141790970 - L2 LINE L2 -473 2841 2329 1607 224 17 14 chrX 20809040 20809402 -141790528 + MLT1A1 LTR MaLR 3 365 0 2308 84 0 7 chrX 20809610 20809906 -141790024 - AluSc SINE Alu -15 294 1 1043 212 18 14 chrX 20810798 20811020 -141788910 - MER58A DNA MER1_type -1 223 1 23 0 0 0 chrX 20811337 20811360 -141788570 + AT_rich Low_complexity Low_complexity 1 23 0 10547 184 6 44 chrX 20811407 20812921 -141787009 - L1PA15 LINE L1 -21 6144 4574 388 70 35 0 chrX 20812921 20812978 -141786952 - AluSc SINE Alu 0 299 241 10547 184 6 44 chrX 20812978 20814862 -141785068 - L1PA15 LINE L1 -1591 4574 2827 1983 110 7 4 chrX 20815820 20816101 -141783829 + AluSp SINE Alu 1 282 -31 315 0 0 0 chrX 20816102 20816137 -141783793 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 235 109 55 73 chrX 20816281 20816336 -141783594 + MADE1 DNA Mariner 1 54 -26 243 88 0 0 chrX 20818253 20818287 -141781643 + (GA)n Simple_repeat Simple_repeat 2 35 0 520 213 25 0 chrX 20818847 20818969 -141780961 - L1MA9 LINE L1 -22 6290 6166 222 118 0 0 chrX 20818970 20819004 -141780926 + (TG)n Simple_repeat Simple_repeat 1 34 0 32 26 0 0 chrX 20819057 20819096 -141780834 + AT_rich Low_complexity Low_complexity 1 39 0 1533 271 25 28 chrX 20819151 20819660 -141780270 - L1MC4 LINE L1 -106 7936 7429 210 341 117 28 chrX 20820182 20820431 -141779499 + L2 LINE L2 2456 2726 -588 265 266 203 16 chrX 20820736 20820864 -141779066 + L2 LINE L2 3142 3293 -20 321 293 96 23 chrX 20821390 20821727 -141778203 - MLT1J LTR MaLR -1 428 66 205 155 35 0 chrX 20821854 20821912 -141778018 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 208 306 56 28 chrX 20822676 20822784 -141777146 - MIR SINE MIR -146 116 6 204 40 0 0 chrX 20823103 20823128 -141776802 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 824 0 10 0 chrX 20823128 20823224 -141776706 + (GGAAA)n Simple_repeat Simple_repeat 5 101 0 2160 179 28 7 chrX 20824466 20824903 -141775027 - L1MA8 LINE L1 -2 6289 5844 253 230 50 93 chrX 20825206 20825254 -141774676 - MARNA DNA Mariner -308 278 229 2031 101 14 0 chrX 20825254 20825649 -141774281 + AluSx SINE Alu 3 401 0 253 230 50 93 chrX 20825649 20825738 -141774192 - MARNA DNA Mariner -357 229 146 1302 153 37 4 chrX 20826044 20826286 -141773644 + L1MA9 LINE L1 5819 6068 -244 293 311 53 80 chrX 20826767 20826992 -141772938 + LTR16A LTR ERVL 225 443 -7 1810 143 93 24 chrX 20827217 20827601 -141772329 - L1MA8 LINE L1 -141 6150 5738 453 178 76 17 chrX 20827584 20827702 -141772228 + L1MA8 LINE L1 6162 6286 -5 * 1969 258 114 13 chrX 20828311 20828908 -141771022 - MLT2F LTR ERVL 0 663 7 331 250 177 0 chrX 20828908 20829004 -141770926 - MIR SINE MIR -53 209 97 1239 254 77 85 chrX 20829024 20829087 -141770843 + L1ME LINE L1 40 102 -5968 2108 134 0 3 chrX 20829087 20829392 -141770538 - AluSx SINE Alu -8 304 1 1239 254 77 85 chrX 20829392 20829407 -141770523 + L1ME LINE L1 102 116 -5954 3562 182 15 27 chrX 20829407 20830148 -141769782 + L1MA10 LINE L1 5600 6331 -3 201 39 0 0 chrX 20830156 20830182 -141769748 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1239 254 77 85 chrX 20830182 20830901 -141769029 + L1ME LINE L1 123 840 -5230 976 294 143 18 chrX 20830921 20831363 -141768567 - L2 LINE L2 -399 2915 2419 370 249 64 98 chrX 20831367 20831452 -141768478 - MER45A DNA AcHobo -1407 174 95 2190 96 0 4 chrX 20831452 20831770 -141768160 + AluSg SINE Alu 2 318 0 370 249 64 98 chrX 20831770 20831856 -141768074 - MER45A DNA AcHobo -1486 95 8 28 29 0 0 chrX 20831956 20831991 -141767939 + AT_rich Low_complexity Low_complexity 1 35 0 1583 163 80 49 chrX 20832375 20832701 -141767229 - MER44D DNA MER2_type -1 608 3 26 0 0 0 chrX 20833044 20833070 -141766860 + AT_rich Low_complexity Low_complexity 1 26 0 307 295 125 14 chrX 20833352 20833633 -141766297 - L1MEd LINE L1 -3142 2987 2676 687 75 0 0 chrX 20833735 20833829 -141766101 + L1MA1 LINE L1 6205 6298 -4 245 61 0 61 chrX 20834140 20834158 -141765772 + (TA)n Simple_repeat Simple_repeat 1 19 -27 530 45 0 0 chrX 20834158 20834225 -141765705 - L1MA1 LINE L1 -15 6287 6221 245 61 0 61 chrX 20834225 20834255 -141765675 + (TA)n Simple_repeat Simple_repeat 19 46 0 210 91 0 0 chrX 20834254 20834287 -141765643 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 2032 117 14 0 chrX 20834513 20834804 -141765126 - AluSx SINE Alu -14 298 4 296 316 156 45 chrX 20835164 20835522 -141764408 - L1MEd LINE L1 -5509 610 213 21 0 0 0 chrX 20835776 20835797 -141764133 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrX 20836621 20836643 -141763287 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 1118 190 80 23 chrX 20836679 20836942 -141762988 + AluJb SINE Alu 17 294 -18 315 345 106 45 chrX 20837209 20837606 -141762324 - L3 LINE CR1 -227 1350 930 649 345 208 2 chrX 20837912 20838350 -141761580 - L3 LINE CR1 -738 839 312 2046 203 62 78 chrX 20838955 20839581 -141760349 + MLT1E3 LTR MaLR 1 616 -8 1110 160 19 19 chrX 20839589 20839795 -141760135 + AluJo SINE Alu 87 292 -20 1192 226 95 67 chrX 20839831 20840282 -141759648 - L1ME3A LINE L1 -48 6122 5659 288 283 71 9 chrX 20841004 20841117 -141758813 + MIR SINE MIR 69 188 -74 481 139 0 206 chrX 20841134 20841299 -141758631 - MER3 DNA MER1_type -1 208 78 3417 75 0 0 chrX 20841377 20841831 -141758099 + L1PA8 LINE L1 5717 6170 -2 2710 117 147 34 chrX 20842379 20842850 -141757080 - MER1A DNA MER1_type 0 527 4 393 172 0 11 chrX 20843956 20844049 -141755881 + L1MA9 LINE L1 6213 6304 -8 477 225 69 92 chrX 20844521 20844694 -141755236 + MER5A DNA MER1_type 1 169 -20 3122 148 24 4 chrX 20844943 20845491 -141754439 + L1MB3 LINE L1 5591 6149 -34 1381 148 62 0 chrX 20845483 20845692 -141754238 + L1PB4 LINE L1 5569 5764 -392 * 234 0 0 0 chrX 20845692 20845718 -141754212 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chrX 20845717 20845750 -141754180 + (CA)n Simple_repeat Simple_repeat 2 34 0 1381 148 62 0 chrX 20845718 20845783 -141754147 + L1PB4 LINE L1 5764 5826 -330 915 97 0 24 chrX 20845783 20845907 -141754023 + AluSg/x SINE Alu 170 290 -20 1700 163 30 18 chrX 20845907 20846239 -141753691 + L1PB4 LINE L1 5814 6149 -7 32 26 0 0 chrX 20846268 20846307 -141753623 + AT_rich Low_complexity Low_complexity 1 39 0 2193 85 3 3 chrX 20846441 20846756 -141753174 + AluSq SINE Alu 1 315 0 705 280 71 38 chrX 20846803 20847042 -141752888 - MIR SINE MIR -15 247 1 354 339 124 29 chrX 20847556 20847717 -141752213 + MLT1H LTR MaLR 1 145 -404 2112 106 3 3 chrX 20847717 20848019 -141751911 - AluSg SINE Alu -8 302 1 354 339 124 29 chrX 20848019 20848164 -141751766 + MLT1H LTR MaLR 145 336 -213 1827 122 34 30 chrX 20848392 20848687 -141751243 - AluSx SINE Alu -16 296 1 5335 157 20 51 chrX 20848975 20849658 -141750272 + L1MA6 LINE L1 4931 5634 -666 1834 146 10 36 chrX 20849658 20849967 -141749963 + AluJo SINE Alu 3 303 -9 5335 157 20 51 chrX 20849967 20850149 -141749781 + L1MA6 LINE L1 5634 5820 -480 556 250 0 29 chrX 20850149 20850285 -141749645 + FLAM_C SINE Alu 2 133 0 5335 157 20 51 chrX 20850285 20850787 -141749143 + L1MA6 LINE L1 5820 6272 -28 2365 68 7 0 chrX 20850787 20851081 -141748849 - AluSp SINE Alu -17 296 1 5335 157 20 51 chrX 20851081 20851109 -141748821 + L1MA6 LINE L1 6272 6299 -1 221 250 29 0 chrX 20851848 20851916 -141748014 + (CA)n Simple_repeat Simple_repeat 1 70 0 606 334 98 6 chrX 20852711 20853028 -141746902 + MLT1J2 LTR MaLR 63 408 -42 237 176 59 59 chrX 20853123 20853191 -141746739 + MIR SINE MIR 154 221 -41 221 329 40 13 chrX 20853332 20853408 -141746522 - MIR3 SINE MIR -119 89 12 778 241 67 0 chrX 20853861 20854056 -141745874 + MER3 DNA MER1_type 1 208 -1 192 418 62 21 chrX 20854370 20854564 -141745366 + L2 LINE L2 1344 1545 -1769 2341 80 0 16 chrX 20854612 20854624 -141745306 - AluSc SINE Alu 0 309 298 210 37 0 0 chrX 20854624 20854651 -141745279 + (TG)n Simple_repeat Simple_repeat 2 28 0 2341 80 0 16 chrX 20854651 20854952 -141744978 - AluSc SINE Alu -11 298 1 189 74 0 0 chrX 20855074 20855101 -141744829 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chrX 20856509 20856532 -141743398 + AT_rich Low_complexity Low_complexity 1 23 0 218 160 40 13 chrX 20856847 20856922 -141743008 + (TA)n Simple_repeat Simple_repeat 2 78 0 278 208 28 0 chrX 20856944 20857088 -141742842 + (TA)n Simple_repeat Simple_repeat 1 148 0 234 190 52 0 chrX 20857093 20857151 -141742779 - L1MCa LINE L1 -4371 2055 1995 267 280 0 21 chrX 20857179 20857272 -141742658 - L1MC4 LINE L1 -1337 6705 6615 244 290 0 21 chrX 20857272 20857365 -141742565 + L1MC4 LINE L1 6613 6703 -1339 440 213 0 48 chrX 20857391 20857579 -141742351 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 258 276 46 0 chrX 20857584 20857671 -141742259 + L1MC4 LINE L1 6613 6703 -1339 232 333 0 0 chrX 20857659 20857746 -141742184 - L1MC4 LINE L1 -1339 6703 6617 * 230 320 39 0 chrX 20857883 20857961 -141741969 - MER91B DNA MER1_type -23 167 87 265 271 0 110 chrX 20857975 20858093 -141741837 - MER91B DNA MER1_type -60 130 26 1143 94 0 99 chrX 20858459 20858650 -141741280 + AluSc SINE Alu 138 309 0 225 65 0 0 chrX 20858664 20858695 -141741235 + (TC)n Simple_repeat Simple_repeat 2 32 0 2104 114 0 0 chrX 20859802 20860114 -141739816 - AluSx SINE Alu 0 313 2 1322 189 4 47 chrX 20860223 20860498 -141739432 + AluJo SINE Alu 3 265 -47 898 86 19 25 chrX 20860506 20860668 -141739262 + (TTTC)n Simple_repeat Simple_repeat 1 161 0 333 67 0 0 chrX 20860668 20860713 -141739217 - Alu SINE Alu -257 45 1 210 150 0 0 chrX 20860727 20860767 -141739163 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5457 189 10 4 chrX 20861035 20861362 -141738568 - L1 LINE L1 -1404 4742 4419 216 0 0 0 chrX 20861362 20861386 -141738544 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5457 189 10 4 chrX 20861386 20862167 -141737763 - L1 LINE L1 -1727 4419 3627 * 6063 140 7 6 chrX 20862155 20863189 -141736741 + L1PB1 LINE L1 4748 5788 -363 525 32 0 0 chrX 20863189 20863252 -141736678 + (TA)n Simple_repeat Simple_repeat 1 63 0 6063 140 7 6 chrX 20863252 20863612 -141736318 + L1PB1 LINE L1 5788 6146 -5 30 27 0 0 chrX 20863612 20863649 -141736281 + AT_rich Low_complexity Low_complexity 1 37 0 262 284 0 0 chrX 20863972 20864039 -141735891 - MIR SINE MIR -86 176 110 272 343 37 37 chrX 20864082 20864216 -141735714 + MIR SINE MIR 14 147 -115 642 292 55 61 chrX 20865171 20865507 -141734423 - L2 LINE L2 -5 3308 2972 2241 94 7 0 chrX 20865507 20865804 -141734126 + AluSg SINE Alu 1 299 -11 642 292 55 61 chrX 20865804 20865915 -141734015 - L2 LINE L2 -341 2972 2862 2206 92 37 0 chrX 20865915 20866210 -141733720 + AluY SINE Alu 1 306 -5 642 292 55 61 chrX 20866210 20866346 -141733584 - L2 LINE L2 -451 2862 2670 6325 76 14 1 chrX 20866346 20867162 -141732768 - LTR12 LTR ERV1 0 826 1 642 292 55 61 chrX 20867162 20867195 -141732735 - L2 LINE L2 -643 2670 2638 1368 200 53 19 chrX 20867196 20867683 -141732247 + L1MB7 LINE L1 4965 5470 -700 1931 136 7 3 chrX 20867750 20868221 -141731709 + AluSx SINE Alu 1 472 0 1601 223 159 24 chrX 20868221 20868845 -141731085 + L1MB7 LINE L1 5476 6183 -1 965 249 123 30 chrX 20868846 20869243 -141730687 - L2 LINE L2 -664 2650 2217 4836 126 41 0 chrX 20869266 20870050 -141729880 - L1MA4A LINE L1 -12 6291 5476 1263 101 0 0 chrX 20870052 20870221 -141729709 - AluSc SINE Alu -10 299 131 2419 68 0 0 chrX 20870222 20870518 -141729412 - AluY SINE Alu -15 296 1 1610 125 22 8 chrX 20870518 20870901 -141729029 - L1MA4A LINE L1 -743 5403 5100 4750 107 20 4 chrX 20870910 20871650 -141728280 + L1MA4A LINE L1 5548 6299 -4 254 224 90 0 chrX 20873437 20873504 -141726426 + MIR SINE MIR 81 153 -109 299 331 105 22 chrX 20873652 20873811 -141726119 - MIR SINE MIR -58 150 21 8498 102 46 9 chrX 20873827 20875068 -141724862 - HSMAR1 DNA Mariner 0 1287 1 364 257 28 9 chrX 20875259 20875368 -141724562 + CT-rich Low_complexity Low_complexity 4 114 0 30 59 0 0 chrX 20875999 20876050 -141723880 + AT_rich Low_complexity Low_complexity 1 51 0 370 311 65 53 chrX 20876054 20876395 -141723535 - L1M4 LINE L1 -3654 2492 2148 27 49 0 0 chrX 20876398 20876439 -141723491 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 20876519 20876540 -141723390 + AT_rich Low_complexity Low_complexity 1 21 0 1916 143 0 0 chrX 20876705 20877028 -141722902 - AluSx SINE Alu 0 328 6 265 180 0 0 chrX 20877173 20877223 -141722707 - L1PA16 LINE L1 -4 6162 6113 560 205 6 0 chrX 20877226 20877382 -141722548 + (TA)n Simple_repeat Simple_repeat 1 157 0 315 284 45 0 chrX 20877394 20877482 -141722448 + L1MC4 LINE L1 6614 6705 -1337 375 270 0 0 chrX 20877501 20877653 -141722277 + (TA)n Simple_repeat Simple_repeat 2 153 0 356 222 9 0 chrX 20877797 20877905 -141722025 + (TA)n Simple_repeat Simple_repeat 1 109 0 4726 162 40 15 chrX 20877907 20879047 -141720883 - L1PA16 LINE L1 -37 6129 4976 21 36 0 0 chrX 20879567 20879595 -141720335 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chrX 20880535 20880558 -141719372 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 944 214 16 0 chrX 20880913 20881100 -141718830 + MER58A DNA MER1_type 35 224 0 187 228 35 35 chrX 20882113 20882170 -141717760 - MER5B DNA MER1_type 0 178 122 634 128 55 0 chrX 20882175 20882284 -141717646 + L1PB3 LINE L1 6040 6154 0 183 379 0 15 chrX 20882446 20882512 -141717418 - L2 LINE L2 -171 3101 3037 442 258 31 47 chrX 20882617 20882745 -141717185 + MER5B DNA MER1_type 53 178 0 262 224 56 7 chrX 20883494 20883684 -141716246 + (TA)n Simple_repeat Simple_repeat 1 199 0 384 132 63 13 chrX 20883695 20883854 -141716076 + (TA)n Simple_repeat Simple_repeat 2 168 0 23 33 0 0 chrX 20883929 20883959 -141715971 + AT_rich Low_complexity Low_complexity 1 30 0 818 250 146 61 chrX 20883959 20884139 -141715791 + L1MC4 LINE L1 7527 7690 -352 2238 96 7 0 chrX 20884139 20884431 -141715499 - AluSq SINE Alu -15 298 5 818 250 146 61 chrX 20884431 20884722 -141715208 + L1MC4 LINE L1 7690 8038 -4 226 272 101 69 chrX 20884772 20884989 -141714941 - L2 LINE L2 -75 3238 3015 2954 65 0 0 chrX 20885598 20885982 -141713948 - L1PA6 LINE L1 -1 6153 5770 2526 71 0 0 chrX 20885982 20886300 -141713630 - L1PA6 LINE L1 0 6154 5832 22 0 0 0 chrX 20886681 20886703 -141713227 + AT_rich Low_complexity Low_complexity 1 22 0 800 245 36 51 chrX 20886966 20887219 -141712711 - MLT1A2 LTR MaLR 0 374 126 4967 30 78 0 chrX 20887221 20887860 -141712070 - L1PA3 LINE L1 -743 5403 4715 6221 26 0 0 chrX 20887860 20888624 -141711306 + L1PA3 LINE L1 5419 6186 0 874 167 35 0 chrX 20888624 20888768 -141711162 - MLT1A2 LTR MaLR -224 150 2 597 296 142 49 chrX 20888885 20889357 -141710573 + L2 LINE L2 2799 3313 0 32 26 0 0 chrX 20890130 20890169 -141709761 + AT_rich Low_complexity Low_complexity 1 39 0 2314 80 0 0 chrX 20890577 20890863 -141709067 - AluSc SINE Alu -23 286 1 198 0 0 0 chrX 20890870 20890892 -141709038 + (T)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chrX 20891693 20891716 -141708214 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chrX 20891756 20891781 -141708149 + AT_rich Low_complexity Low_complexity 1 25 0 2063 127 0 3 chrX 20891784 20892075 -141707855 - AluSx SINE Alu -22 290 1 1445 124 4 0 chrX 20892670 20892904 -141707026 + L1MA4 LINE L1 6065 6299 -1 760 284 77 11 chrX 20894501 20894762 -141705168 + L2 LINE L2 1782 2059 -1255 33 80 0 0 chrX 20894933 20895008 -141704922 + AT_rich Low_complexity Low_complexity 1 75 0 214 278 19 0 chrX 20895371 20895425 -141704505 - L2 LINE L2 -1 3271 3217 745 152 0 24 chrX 20895649 20895774 -141704156 - AluJb SINE Alu -6 306 185 1148 357 118 11 chrX 20896056 20896720 -141703210 + L2 LINE L2 75 809 -2505 296 289 94 16 chrX 20896751 20896879 -141703051 - MLT1G1 LTR MaLR 0 595 458 21 82 0 0 chrX 20897923 20897972 -141701958 + AT_rich Low_complexity Low_complexity 1 49 0 723 346 60 40 chrX 20898105 20898518 -141701412 - L2 LINE L2 -2 3311 2884 2346 156 46 5 chrX 20898518 20898935 -141700995 - MER61C LTR ERV1 0 434 1 723 346 60 40 chrX 20898935 20899122 -141700808 - L2 LINE L2 -429 2884 2702 280 128 21 0 chrX 20899505 20899552 -141700378 + Alu SINE Alu 1 48 -254 1148 133 0 0 chrX 20899553 20899733 -141700197 + AluSg/x SINE Alu 127 306 -4 930 266 105 91 chrX 20899734 20899937 -141699993 + HAL1 LINE L1 999 1198 -1309 1951 119 25 14 chrX 20899937 20900223 -141699707 + AluSc SINE Alu 1 289 -20 930 266 105 91 chrX 20900223 20901132 -141698798 + HAL1 LINE L1 1198 2127 -380 387 253 75 65 chrX 20901891 20902077 -141697853 + HAL1 LINE L1 1701 1888 -619 273 98 0 0 chrX 20902302 20902343 -141697587 + (TA)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chrX 20902344 20902372 -141697558 + (TG)n Simple_repeat Simple_repeat 1 28 0 941 262 111 43 chrX 20902383 20902753 -141697177 + MSTD LTR MaLR 2 396 0 2146 106 0 3 chrX 20902946 20903238 -141696692 - AluSg1 SINE Alu -18 291 1 2910 160 50 0 chrX 20903405 20903968 -141695962 - L1MC3 LINE L1 -1 7784 7194 4641 236 67 52 chrX 20903970 20904140 -141695790 - L1MCb LINE L1 -2342 4222 4056 3663 135 24 64 chrX 20904140 20904860 -141695070 + LTR8 LTR ERV1 1 691 0 4641 236 67 52 chrX 20904860 20905138 -141694792 - L1MCb LINE L1 -2508 4056 3784 1936 109 40 0 chrX 20905138 20905436 -141694494 - AluSc SINE Alu 0 309 1 4641 236 67 52 chrX 20905436 20909142 -141690788 - L1MCb LINE L1 -2780 3784 8 2271 69 21 3 chrX 20909921 20910211 -141689719 - AluY SINE Alu -16 295 1 318 364 17 51 chrX 20911574 20911750 -141688180 + L1ME LINE L1 272 441 -5629 726 137 7 43 chrX 20911986 20912125 -141687805 + AluJo SINE Alu 1 134 -178 241 329 122 53 chrX 20912683 20912929 -141687001 + L2 LINE L2 2537 2799 -515 251 122 0 20 chrX 20913008 20913057 -141686873 + L1ME LINE L1 557 604 -4958 2987 161 14 55 chrX 20913243 20913809 -141686121 + MLT2B3 LTR ERVL 1 543 -11 1998 209 152 73 chrX 20914480 20915425 -141684505 + LTR28 LTR ERV1 1 1020 0 207 214 0 0 chrX 20915710 20915752 -141684178 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 497 332 149 26 chrX 20915754 20916283 -141683647 - L2 LINE L2 0 3313 2707 1504 247 170 30 chrX 20916299 20916922 -141683008 - L1ME3A LINE L1 -17 6153 5444 25 31 0 0 chrX 20916929 20916961 -141682969 + AT_rich Low_complexity Low_complexity 1 32 0 1652 254 60 48 chrX 20916972 20917590 -141682340 - L1ME1 LINE L1 -102 6064 5440 * 1835 244 87 31 chrX 20917587 20917701 -141682229 - L1ME1 LINE L1 -957 5189 5083 2292 87 0 7 chrX 20917701 20918000 -141681930 + AluSg SINE Alu 1 297 -13 1835 244 87 31 chrX 20918000 20918336 -141681594 - L1ME1 LINE L1 -1063 5083 4767 2216 111 0 9 chrX 20918336 20918651 -141681279 + AluSx SINE Alu 1 312 0 1835 244 87 31 chrX 20918651 20918691 -141681239 - L1ME1 LINE L1 -1379 4767 4731 333 143 10 92 chrX 20918691 20918789 -141681141 - L1PA11 LINE L1 0 6174 6085 1835 244 87 31 chrX 20918789 20919067 -141680863 - L1ME1 LINE L1 -1415 4731 4376 1934 150 20 3 chrX 20919067 20919367 -141680563 + AluSx SINE Alu 1 305 -7 582 238 11 21 chrX 20919424 20919613 -141680317 - L1ME1 LINE L1 -2097 4049 3863 * 1077 225 43 130 chrX 20919602 20920411 -141679519 - L1ME1 LINE L1 -2771 3375 2637 2110 126 0 10 chrX 20920416 20920725 -141679205 - AluSq SINE Alu -7 306 1 697 317 21 21 chrX 20920760 20921193 -141678737 - L1 LINE L1 -2220 3926 3478 443 270 44 28 chrX 20921193 20921428 -141678502 + L1ME LINE L1 5267 5508 -656 2310 96 0 7 chrX 20921428 20921730 -141678200 + AluY SINE Alu 1 300 -11 443 270 44 28 chrX 20921730 20921746 -141678184 + L1ME LINE L1 5508 5522 -642 499 255 10 21 chrX 20921759 20921951 -141677979 + L1ME3A LINE L1 5343 5532 -630 1911 221 64 51 chrX 20921968 20922560 -141677370 - LTR9 LTR ERV1 0 612 13 358 278 160 36 chrX 20922565 20922871 -141677059 + L1ME3A LINE L1 5565 5908 -262 22 0 0 0 chrX 20923212 20923234 -141676696 + AT_rich Low_complexity Low_complexity 1 22 0 306 138 0 0 chrX 20923610 20923668 -141676262 + (CA)n Simple_repeat Simple_repeat 2 59 0 2076 123 0 25 chrX 20923956 20924273 -141675657 - AluY SINE Alu -2 309 1 192 318 0 0 chrX 20924405 20924449 -141675481 + L2 LINE L2 1834 1877 -1437 202 377 55 20 chrX 20924510 20924656 -141675274 + L2 LINE L2 2384 2534 -780 786 209 114 20 chrX 20924657 20924858 -141675072 - MLT1B LTR MaLR 0 379 155 3381 162 15 2 chrX 20924857 20925451 -141674479 - L1PB4 LINE L1 0 6156 5555 1627 150 17 19 chrX 20925453 20925882 -141674048 + L1PB4 LINE L1 5102 5536 -620 747 215 25 6 chrX 20925887 20926045 -141673885 - MLT1B LTR MaLR -213 161 1 21 36 0 0 chrX 20926349 20926377 -141673553 + AT_rich Low_complexity Low_complexity 1 28 0 909 204 18 0 chrX 20926395 20926562 -141673368 - FAM SINE Alu -4 45 1 1853 141 7 0 chrX 20926669 20926973 -141672957 - L1MB1 LINE L1 0 6168 5863 2965 151 20 2 chrX 20926973 20927478 -141672452 + L1MB1 LINE L1 5345 5858 -310 223 366 56 49 chrX 20927491 20927582 -141672348 + L2 LINE L2 2694 2783 -530 2035 80 6 96 chrX 20927582 20927906 -141672024 - AluSq SINE Alu -18 295 1 223 366 56 49 chrX 20927906 20928179 -141671751 + L2 LINE L2 2783 3057 -256 340 336 119 0 chrX 20928341 20928475 -141671455 + L2 LINE L2 3162 3311 -2 250 395 25 15 chrX 20928493 20928693 -141671237 + L2 LINE L2 2376 2577 -737 648 180 12 72 chrX 20929215 20929342 -141670588 - L1MA10 LINE L1 0 6334 6217 2097 113 0 0 chrX 20929342 20929650 -141670280 + AluSx SINE Alu 1 308 0 648 180 12 72 chrX 20929650 20929688 -141670242 - L1MA10 LINE L1 -117 6217 6178 422 266 43 29 chrX 20930295 20930434 -141669496 - MLT1J2 LTR MaLR -58 392 252 272 300 77 31 chrX 20930514 20930644 -141669286 - MLT1J2 LTR MaLR -314 136 1 2189 196 52 17 chrX 20930945 20931180 -141668750 + LOR1a LTR ERV1 1 226 -271 2190 75 37 7 chrX 20931180 20931474 -141668456 - AluY SINE Alu -8 303 1 2189 196 52 17 chrX 20931474 20931718 -141668212 + LOR1a LTR ERV1 226 497 0 1694 174 22 0 chrX 20931922 20932197 -141667733 + AluJo SINE Alu 1 281 -31 512 123 0 0 chrX 20932332 20932405 -141667525 - MER57B LTR ERV1 -360 74 2 2027 175 29 42 chrX 20932405 20932864 -141667066 - L1M2 LINE L1 -619 5672 5210 2074 124 0 3 chrX 20932864 20933184 -141666746 + AluSx SINE Alu 1 319 0 2027 175 29 42 chrX 20933184 20933445 -141666485 - L1M2 LINE L1 -1081 5210 4947 390 100 86 0 chrX 20933529 20933599 -141666331 - L1PA13 LINE L1 -4 6159 6084 10051 138 26 11 chrX 20933699 20935296 -141664634 - L1P3 LINE L1 -4836 1625 5 451 173 0 0 chrX 20935334 20935415 -141664515 - FLAM_A SINE Alu -32 110 30 3381 147 11 0 chrX 20935515 20936044 -141663886 - L1PA15 LINE L1 -296 5869 5335 * 8630 66 1 1 chrX 20936037 20937181 -141662749 - L1P LINE L1 -3091 3055 1912 21 36 0 0 chrX 20937938 20937966 -141661964 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 20938320 20938356 -141661574 + AT_rich Low_complexity Low_complexity 1 36 0 233 237 0 17 chrX 20938463 20938522 -141661408 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 2044 99 0 11 chrX 20938556 20938864 -141661066 + AluY SINE Alu 1 305 0 1907 156 3 7 chrX 20939111 20939418 -141660512 - AluSq SINE Alu -7 306 1 24 53 0 0 chrX 20940139 20940177 -141659753 + AT_rich Low_complexity Low_complexity 1 38 0 1649 203 116 91 chrX 20941273 20942010 -141657920 + LTR1B LTR ERV1 1 745 -81 374 375 7 0 chrX 20942109 20942320 -141657610 - HERVL LTR ERVL -511 5143 4985 231 235 0 0 chrX 20942340 20942391 -141657539 + T-rich Low_complexity Low_complexity 1 51 0 546 358 50 10 chrX 20942741 20943043 -141656887 - HERVL LTR ERVL -1904 3860 3547 403 154 0 22 chrX 20943215 20943306 -141656624 + (TA)n Simple_repeat Simple_repeat 1 89 0 1666 224 81 146 chrX 20943976 20944961 -141654969 + LTR28 LTR ERV1 1 1020 0 619 323 67 50 chrX 20944984 20945548 -141654382 - HERVL LTR ERVL -3297 2467 1894 460 319 103 28 chrX 20945592 20945874 -141654056 - LTR16A1 LTR ERVL -8 449 147 2528 166 18 11 chrX 20946056 20946514 -141653416 + LOR1b LTR ERV1 1 461 0 1054 45 0 0 chrX 20946621 20946754 -141653176 + L1PA8 LINE L1 6039 6171 -1 207 0 0 0 chrX 20946771 20946794 -141653136 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 392 345 15 15 chrX 20947582 20947785 -141652145 + MLT1L LTR MaLR 411 613 -2 29 0 0 0 chrX 20948361 20948390 -141651540 + AT_rich Low_complexity Low_complexity 1 29 0 41 0 0 0 chrX 20948523 20948564 -141651366 + AT_rich Low_complexity Low_complexity 1 41 0 1094 129 53 12 chrX 20948841 20949012 -141650918 + AluSg/x SINE Alu 119 296 -14 519 239 6 43 chrX 20950291 20950454 -141649476 - L1ME LINE L1 -410 5754 5598 2127 106 0 16 chrX 20950454 20950757 -141649173 - AluSc SINE Alu -11 298 1 299 205 62 45 chrX 20950967 20951079 -141648851 + L2 LINE L2 3197 3310 -3 2303 77 3 3 chrX 20951278 20951577 -141648353 - AluSc SINE Alu -10 299 1 22 35 0 0 chrX 20952492 20952521 -141647409 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chrX 20952685 20952741 -141647189 + AT_rich Low_complexity Low_complexity 1 56 0 1852 128 0 0 chrX 20953030 20953311 -141646619 - AluSq SINE Alu 0 316 36 347 236 28 0 chrX 20953614 20953686 -141646244 - MER2 DNA MER2_type -1 344 271 573 200 20 0 chrX 20953759 20953859 -141646071 - MER2 DNA MER2_type -241 104 3 194 147 59 0 chrX 20953895 20953963 -141645967 + (TA)n Simple_repeat Simple_repeat 1 72 0 2159 114 10 3 chrX 20954168 20954465 -141645465 - AluSq SINE Alu -14 299 1 190 277 79 30 chrX 20954984 20955085 -141644845 + MIR SINE MIR 96 201 -61 2225 94 3 3 chrX 20956424 20956721 -141643209 + AluSx SINE Alu 1 297 -15 4003 158 69 11 chrX 20957314 20958095 -141641835 - LTR1B LTR ERV1 0 826 1 2294 82 23 3 chrX 20958582 20958887 -141641043 - AluSx SINE Alu -1 311 1 216 163 0 0 chrX 20959343 20959386 -141640544 + (TA)n Simple_repeat Simple_repeat 1 43 0 309 118 0 0 chrX 20959407 20959458 -141640472 + (GA)n Simple_repeat Simple_repeat 1 51 0 198 0 0 0 chrX 20959574 20959596 -141640334 + (TA)n Simple_repeat Simple_repeat 2 23 0 2243 103 3 3 chrX 20961373 20961675 -141638255 + AluSp SINE Alu 1 302 -11 439 338 0 25 chrX 20961700 20961901 -141638029 - LTR67 LTR ERVL -2 555 360 812 156 0 0 chrX 20962223 20962345 -141637585 - FLAM_C SINE Alu -9 134 13 22 35 0 0 chrX 20963132 20963161 -141636769 + AT_rich Low_complexity Low_complexity 1 29 0 208 264 0 0 chrX 20963201 20963254 -141636676 + (TA)n Simple_repeat Simple_repeat 1 53 0 1762 180 0 16 chrX 20963382 20963688 -141636242 + AluJo SINE Alu 1 301 -11 1086 192 28 9 chrX 20964408 20964622 -141635308 - AluJo SINE Alu -90 222 5 1319 67 112 0 chrX 20965248 20965426 -141634504 - AluSg/x SINE Alu -22 290 93 255 200 0 0 chrX 20965629 20965669 -141634261 - L2 LINE L2 -35 3237 3198 463 307 37 17 chrX 20966773 20966821 -141633109 - MIR3 SINE MIR -5 257 211 2143 108 14 0 chrX 20966821 20967109 -141632821 - AluSg SINE Alu -18 292 1 463 307 37 17 chrX 20967109 20967308 -141632622 - MIR3 SINE MIR -51 211 5 1831 186 0 0 chrX 20967411 20967702 -141632228 + AluJb SINE Alu 1 291 -21 314 123 18 0 chrX 20967702 20967759 -141632171 + (CA)n Simple_repeat Simple_repeat 1 58 0 183 338 0 42 chrX 20967909 20967980 -141631950 + MIR3 SINE MIR 6 73 -135 1989 138 10 0 chrX 20968090 20968410 -141631520 - AluSx SINE Alu 0 312 1 21 0 0 0 chrX 20968410 20968431 -141631499 + AT_rich Low_complexity Low_complexity 1 21 0 2045 116 3 31 chrX 20969360 20969678 -141630252 - AluSx SINE Alu -3 309 1 1636 56 19 0 chrX 20969694 20969907 -141630023 - L1PA12 LINE L1 -1 6167 5951 268 331 51 46 chrX 20970314 20970489 -141629441 - MIR3 SINE MIR -3 205 30 636 279 48 85 chrX 20970663 20971040 -141628890 + L2 LINE L2 1584 1946 -1368 423 308 93 50 chrX 20971129 20971408 -141628522 - MLT1H LTR MaLR -257 292 2 2691 254 65 50 chrX 20971409 20971726 -141628204 + L2 LINE L2 1893 2204 -1110 408 130 78 0 chrX 20971726 20971803 -141628127 + L1MB2 LINE L1 6087 6169 -2 2691 254 65 50 chrX 20971803 20972445 -141627485 + L2 LINE L2 2204 2866 -448 2227 166 75 15 chrX 20972465 20972934 -141626996 + LOR1a LTR ERV1 1 497 0 262 314 133 0 chrX 20972988 20973093 -141626837 - MER91C DNA MER1_type 0 140 22 822 291 109 36 chrX 20973124 20973693 -141626237 - L2 LINE L2 -148 3165 2544 270 0 0 0 chrX 20973769 20973799 -141626131 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 312 39 26 chrX 20974093 20974324 -141625606 - L1M4 LINE L1 -2169 3977 3744 567 225 11 6 chrX 20974366 20974396 -141625534 + (TA)n Simple_repeat Simple_repeat 2 30 -150 1960 103 50 0 chrX 20974396 20974678 -141625252 - AluSg SINE Alu -14 296 1 567 225 11 6 chrX 20974678 20974825 -141625105 + (TA)n Simple_repeat Simple_repeat 30 180 0 27 62 0 0 chrX 20975108 20975156 -141624774 + AT_rich Low_complexity Low_complexity 1 48 0 1560 185 45 11 chrX 20975156 20975443 -141624487 - AluJo SINE Alu -15 297 1 28 0 0 0 chrX 20975564 20975592 -141624338 + AT_rich Low_complexity Low_complexity 1 28 0 378 159 34 0 chrX 20975886 20975974 -141623956 + (TA)n Simple_repeat Simple_repeat 2 92 0 187 100 25 25 chrX 20976052 20976092 -141623838 + (TA)n Simple_repeat Simple_repeat 1 40 0 * 240 86 0 0 chrX 20976091 20976126 -141623804 + (GA)n Simple_repeat Simple_repeat 2 36 0 605 242 33 22 chrX 20976593 20976775 -141623155 + MLT1J LTR MaLR 1 184 -327 26 50 0 0 chrX 20976924 20976964 -141622966 + AT_rich Low_complexity Low_complexity 1 40 0 305 238 12 12 chrX 20976964 20977044 -141622886 + MER116 DNA Mariner 1 80 0 22 56 0 19 chrX 20977201 20977221 -141622709 + AT_rich Low_complexity Low_complexity 1 20 -33 2213 96 3 0 chrX 20977221 20977503 -141622427 + AluSc SINE Alu 1 283 -26 22 56 0 19 chrX 20977503 20977536 -141622394 + AT_rich Low_complexity Low_complexity 20 53 0 228 135 0 27 chrX 20977559 20977596 -141622334 + HAL1b LINE L1 857 892 -456 2531 158 24 5 chrX 20977618 20978036 -141621894 + MSTB LTR MaLR 1 426 0 584 257 6 28 chrX 20978095 20978274 -141621656 - HsTC2 DNA Tc2 -283 1615 1441 22 56 0 0 chrX 20978282 20978318 -141621612 + AT_rich Low_complexity Low_complexity 1 36 0 7737 19 0 0 chrX 20978319 20979750 -141620180 - L1PA2 LINE L1 -2 6153 4724 5048 35 2 0 chrX 20979750 20980387 -141619543 + L1P LINE L1 2828 3465 -2681 22 0 0 0 chrX 20980387 20980409 -141619521 + AT_rich Low_complexity Low_complexity 1 22 0 1139 223 160 5 chrX 20981351 20981499 -141618431 + Charlie4a DNA MER1_type 26 150 -1811 2410 70 6 10 chrX 20981499 20981813 -141618117 - AluSp SINE Alu 0 313 1 1139 223 160 5 chrX 20981813 20982082 -141617848 + Charlie4a DNA MER1_type 150 508 0 599 150 0 9 chrX 20984146 20984259 -141615671 + GA-rich Low_complexity Low_complexity 4 115 0 808 138 40 6 chrX 20984289 20984463 -141615467 + GA-rich Low_complexity Low_complexity 1 180 0 4975 159 49 36 chrX 20984611 20985664 -141614266 + MER11C LTR ERVK 1 1067 -4 288 151 23 12 chrX 20986495 20986581 -141613349 + (TA)n Simple_repeat Simple_repeat 2 88 0 1771 124 3 95 chrX 20986835 20987185 -141612745 - AluSp SINE Alu 0 321 1 313 281 0 0 chrX 20987236 20987300 -141612630 - MIR SINE MIR -62 146 83 21 36 0 0 chrX 20987522 20987550 -141612380 + AT_rich Low_complexity Low_complexity 1 28 0 333 0 0 0 chrX 20987761 20987798 -141612132 + (CA)n Simple_repeat Simple_repeat 2 38 0 2163 82 36 0 chrX 20988400 20988679 -141611251 - AluSc SINE Alu -20 289 1 459 0 0 0 chrX 20988729 20988780 -141611150 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 271 329 82 41 chrX 20989528 20989591 -141610339 - MIR SINE MIR -44 218 159 3053 153 2 4 chrX 20989591 20990089 -141609841 + LOR1a LTR ERV1 1 497 0 271 329 82 41 chrX 20990089 20990195 -141609735 - MIR SINE MIR -103 159 42 255 320 109 26 chrX 20990227 20990383 -141609547 - MIR3 SINE MIR -21 187 19 24 0 0 0 chrX 20990451 20990475 -141609455 + AT_rich Low_complexity Low_complexity 1 24 0 249 211 0 0 chrX 20990600 20990652 -141609278 - L1MC4 LINE L1 -1339 6703 6652 26 64 0 0 chrX 20991570 20991617 -141608313 + AT_rich Low_complexity Low_complexity 1 47 0 322 151 0 0 chrX 20993009 20993062 -141606868 + AluJ/FLAM SINE Alu 37 89 -213 535 188 10 0 chrX 20993478 20993579 -141606351 + MER33 DNA MER1_type 8 109 -215 21 36 0 0 chrX 20993579 20993607 -141606323 + AT_rich Low_complexity Low_complexity 1 28 0 637 222 8 0 chrX 20993607 20993733 -141606197 - FLAM_C SINE Alu -16 127 1 390 153 74 163 chrX 20993751 20993890 -141606040 + MER33 DNA MER1_type 129 244 -2341 2290 92 3 0 chrX 20993890 20994183 -141605747 - AluY SINE Alu -17 294 1 390 153 74 163 chrX 20994183 20994258 -141605672 + MER33 DNA MER1_type 244 324 0 1189 156 22 53 chrX 20994266 20994491 -141605439 - MER20 DNA MER1_type 0 219 2 31 88 0 0 chrX 20994754 20994834 -141605096 + AT_rich Low_complexity Low_complexity 1 80 0 2068 141 111 35 chrX 20994875 20995231 -141604699 + MSTA LTR MaLR 1 392 -36 1806 170 3 13 chrX 20995231 20995531 -141604399 - AluJb SINE Alu -15 297 1 2068 141 111 35 chrX 20995531 20995572 -141604358 + MSTA LTR MaLR 392 428 0 297 0 0 0 chrX 20996791 20996824 -141603106 + (A)n Simple_repeat Simple_repeat 1 33 0 3809 125 52 83 chrX 20997054 20997864 -141602066 - LTR1 LTR ERV1 0 785 1 227 152 22 0 chrX 20998100 20998146 -141601784 + CT-rich Low_complexity Low_complexity 3 49 0 1944 145 12 12 chrX 20998679 20999023 -141600907 + LOR1a LTR ERV1 3 346 -151 2096 136 42 33 chrX 20999084 20999445 -141600485 - THE1B LTR MaLR 0 364 1 10664 104 38 11 chrX 20999445 21000967 -141598963 - THE1B-int LTR MaLR 0 1580 19 2305 97 39 31 chrX 21000972 21001332 -141598598 - THE1B LTR MaLR -1 363 1 794 161 0 8 chrX 21001335 21001465 -141598465 + LOR1b LTR ERV1 333 461 0 21 36 0 0 chrX 21002108 21002136 -141597794 + AT_rich Low_complexity Low_complexity 1 28 0 929 282 5 0 chrX 21002210 21002423 -141597507 - MER58A DNA MER1_type -10 214 1 340 204 0 82 chrX 21003344 21003442 -141596488 + L1MC4 LINE L1 6614 6703 -1339 238 264 18 0 chrX 21003554 21003664 -141596266 + Charlie7 DNA MER1_type 2421 2532 -80 32 0 0 0 chrX 21003664 21003696 -141596234 + AT_rich Low_complexity Low_complexity 1 32 0 1229 191 110 80 chrX 21003794 21004237 -141595693 + MER66A LTR ERV1 97 455 -23 277 346 49 27 chrX 21006349 21006612 -141593318 - L1MC/D LINE L1 -2007 5801 5533 830 224 0 0 chrX 21007720 21007876 -141592054 - FRAM SINE Alu -23 153 1 24 77 0 0 chrX 21008043 21008095 -141591835 + AT_rich Low_complexity Low_complexity 1 52 0 251 345 44 9 chrX 21008443 21008556 -141591374 - L2 LINE L2 0 3313 3197 302 214 0 0 chrX 21009041 21009054 -141590876 + MER3 DNA MER1_type 35 47 -162 886 192 40 30 chrX 21009054 21009252 -141590678 - MER3 DNA MER1_type 0 209 10 1837 128 0 35 chrX 21009284 21009593 -141590337 - AluSg SINE Alu 0 299 1 1676 151 0 83 chrX 21009593 21009918 -141590012 - AluJo SINE Alu -14 298 1 419 306 55 67 chrX 21011939 21012056 -141587874 - MIR SINE MIR 0 262 145 2272 71 0 3 chrX 21012056 21012352 -141587578 + AluY SINE Alu 1 295 -16 419 306 55 67 chrX 21012352 21012489 -141587441 - MIR SINE MIR -117 145 11 1011 266 97 50 chrX 21012904 21013325 -141586605 + L2 LINE L2 2873 3313 0 1496 230 82 107 chrX 21013551 21014510 -141585420 + LTR1B LTR ERV1 1 1018 -2 1731 336 51 24 chrX 21014570 21015029 -141584901 + ERVL LTR ERVL 1791 2236 -3528 1618 200 7 3 chrX 21015029 21015314 -141584616 + AluJo SINE Alu 1 286 -26 1731 336 51 24 chrX 21015314 21015846 -141584084 + ERVL LTR ERVL 2236 2809 -2955 10524 39 0 1 chrX 21015966 21017311 -141582619 + L1P LINE L1 3705 5047 -1099 1894 151 3 53 chrX 21017410 21017767 -141582163 + L1PB4 LINE L1 5811 6149 -7 2369 78 3 0 chrX 21017782 21018075 -141581855 - AluSp SINE Alu -19 294 1 306 412 110 94 chrX 21018615 21018989 -141580941 - L2 LINE L2 0 3313 2934 1253 164 19 0 chrX 21019063 21019277 -141580653 - MER20 DNA MER1_type -1 218 1 438 324 69 33 chrX 21020077 21020352 -141579578 - L1ME LINE L1 -627 5539 5255 1721 192 38 43 chrX 21021552 21021943 -141577987 - MLT1B LTR MaLR 0 390 2 390 209 47 0 chrX 21022002 21022131 -141577799 - L1ME LINE L1 -913 5233 5099 508 205 0 54 chrX 21022160 21022272 -141577658 - Tigger3(Golem) DNA MER2_type 0 3038 2933 303 49 0 0 chrX 21022272 21022313 -141577617 + (TA)n Simple_repeat Simple_repeat 2 42 0 305 286 0 0 chrX 21022425 21022502 -141577428 - Tigger3(Golem) DNA MER2_type -2951 78 2 238 255 0 0 chrX 21023122 21023173 -141576757 + MER77 LTR ERV1 359 409 -196 21 57 0 0 chrX 21023847 21023882 -141576048 + AT_rich Low_complexity Low_complexity 1 35 0 32 26 0 0 chrX 21024311 21024350 -141575580 + AT_rich Low_complexity Low_complexity 1 39 0 3129 130 12 2 chrX 21024468 21024977 -141574953 + L1PB4 LINE L1 5641 6154 -2 840 233 0 31 chrX 21025042 21025235 -141574695 + MER5A DNA MER1_type 1 187 -2 6048 123 90 77 chrX 21026165 21028322 -141571608 + pTR5 LTR ERV1 724 2433 -5 256 329 148 24 chrX 21028323 21028533 -141571397 + MIR SINE MIR 22 257 -5 278 274 21 11 chrX 21028592 21028687 -141571243 + MER5A DNA MER1_type 1 96 -93 404 255 92 26 chrX 21028830 21028983 -141570947 + MER5A DNA MER1_type 3 165 -24 228 381 28 17 chrX 21029015 21029191 -141570739 - MER5B DNA MER1_type 0 178 1 2373 64 7 14 chrX 21029645 21029941 -141569989 - AluY SINE Alu -17 294 1 1467 269 72 44 chrX 21030285 21030858 -141569072 + MER77 LTR ERV1 1 589 -16 281 347 75 25 chrX 21031785 21031984 -141567946 + MIR SINE MIR 21 229 -33 290 278 102 19 chrX 21032071 21032179 -141567751 + MER5A DNA MER1_type 1 117 -72 22 0 0 0 chrX 21032203 21032225 -141567705 + AT_rich Low_complexity Low_complexity 1 22 0 469 237 81 58 chrX 21032305 21032478 -141567452 + MER5A DNA MER1_type 7 183 -6 295 354 29 11 chrX 21032493 21032668 -141567262 - MER5B DNA MER1_type 0 178 1 701 112 4 63 chrX 21033653 21034167 -141565763 + (TA)n Simple_repeat Simple_repeat 1 483 0 220 336 203 0 chrX 21034605 21034822 -141565108 - MIR SINE MIR -1 261 1 879 243 112 8 chrX 21035464 21035715 -141564215 + MLT1F LTR MaLR 1 277 -265 683 203 14 7 chrX 21035718 21035866 -141564064 + MLT1F LTR MaLR 394 542 0 281 260 63 19 chrX 21036177 21036319 -141563611 - MLT1J1 LTR MaLR -301 149 2 318 280 95 30 chrX 21036752 21036920 -141563010 - MLT1H LTR MaLR -230 319 141 759 160 104 0 chrX 21037311 21037455 -141562475 + FRAM SINE Alu 1 159 -17 1812 125 3 66 chrX 21037532 21037837 -141562093 - AluJb SINE Alu -20 292 7 190 396 81 0 chrX 21037960 21038071 -141561859 - L2 LINE L2 -17 3255 3136 614 358 58 40 chrX 21038277 21038969 -141560961 - L2 LINE L2 -757 2557 1854 301 261 168 17 chrX 21039447 21039566 -141560364 + HAL1 LINE L1 1490 1626 -881 1706 241 39 0 chrX 21042977 21043466 -141556464 + L1ME2 LINE L1 5419 5926 -238 606 269 23 42 chrX 21043488 21043748 -141556182 + L1ME2 LINE L1 5896 6150 -14 333 235 61 108 chrX 21043798 21044011 -141555919 + L1MC4 LINE L1 7836 8038 -4 3857 129 28 28 chrX 21044123 21044759 -141555171 - L1PA15 LINE L1 0 6165 5530 4526 151 1 43 chrX 21045088 21045921 -141554009 + MER52A LTR ERV1 958 1755 0 23 54 0 0 chrX 21046310 21046347 -141553583 + AT_rich Low_complexity Low_complexity 1 37 0 1185 107 0 0 chrX 21046395 21046554 -141553376 + AluSg/x SINE Alu 146 304 -6 241 256 23 12 chrX 21046971 21047057 -141552873 + CT-rich Low_complexity Low_complexity 5 91 0 272 27 27 0 chrX 21047466 21047503 -141552427 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7544 24 21 0 chrX 21047503 21048428 -141551502 - L1PA3 LINE L1 -16 6139 5211 13168 31 0 0 chrX 21048428 21050079 -141549851 + L1P LINE L1 3266 4916 -1230 1471 274 49 51 chrX 21050256 21050847 -141549083 + MER77 LTR ERV1 8 597 -8 342 0 0 0 chrX 21051268 21051306 -141548624 + (TC)n Simple_repeat Simple_repeat 1 38 0 209 391 31 8 chrX 21051820 21051948 -141547982 + MIR SINE MIR 18 148 -114 311 258 11 43 chrX 21052104 21052197 -141547733 + MER5A DNA MER1_type 2 91 -98 207 0 0 0 chrX 21052237 21052260 -141547670 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 222 250 19 96 chrX 21052315 21052419 -141547511 + MER5A DNA MER1_type 54 149 -40 1688 35 0 0 chrX 21053263 21053461 -141546469 + L1PA3 LINE L1 5955 6152 -3 27 29 0 0 chrX 21053688 21053722 -141546208 + AT_rich Low_complexity Low_complexity 1 34 0 1502 289 53 34 chrX 21053811 21054379 -141545551 + MER77 LTR ERV1 25 603 -2 189 359 101 15 chrX 21055304 21055502 -141544428 + MIR SINE MIR 15 229 -33 410 232 85 67 chrX 21055836 21056000 -141543930 + MER5A DNA MER1_type 17 183 -6 189 0 0 0 chrX 21056112 21056133 -141543797 + (GA)n Simple_repeat Simple_repeat 1 21 0 1222 182 78 31 chrX 21056133 21056391 -141543539 - AluJb SINE Alu -39 273 4 1471 271 57 48 chrX 21057258 21057856 -141542074 + MER77 LTR ERV1 1 603 -2 2458 138 62 5 chrX 21058242 21058647 -141541283 - MSTA LTR MaLR 0 428 1 211 206 39 98 chrX 21059487 21059589 -141540341 + MER5A DNA MER1_type 1 96 -93 283 283 90 41 chrX 21059721 21059866 -141540064 + MER5A DNA MER1_type 1 152 -37 2140 119 3 0 chrX 21059973 21060268 -141539662 + AluSx SINE Alu 7 302 -10 2236 106 33 0 chrX 21060288 21060589 -141539341 - AluSp SINE Alu -2 311 1 22 0 0 0 chrX 21060906 21060928 -141539002 + AT_rich Low_complexity Low_complexity 1 22 0 1513 70 0 11 chrX 21060938 21061124 -141538806 - AluSg/x SINE Alu -17 295 112 1578 175 104 123 chrX 21061128 21061510 -141538420 + MER77 LTR ERV1 152 525 -80 922 198 0 6 chrX 21061510 21061672 -141538258 - FRAM SINE Alu -5 161 1 1578 175 104 123 chrX 21061672 21061752 -141538178 + MER77 LTR ERV1 525 605 0 646 292 44 4 chrX 21062462 21062712 -141537218 + MIR SINE MIR 3 262 0 661 345 40 45 chrX 21062752 21063283 -141536647 + L2 LINE L2 1996 2523 -791 27 29 0 0 chrX 21063791 21063825 -141536105 + AT_rich Low_complexity Low_complexity 1 34 0 218 377 92 18 chrX 21064415 21064643 -141535287 + L2 LINE L2 2811 3055 -217 2167 115 0 0 chrX 21064932 21065239 -141534691 - AluSx SINE Alu 0 307 1 22 0 0 0 chrX 21065961 21065983 -141533947 + AT_rich Low_complexity Low_complexity 1 22 0 197 320 53 13 chrX 21066551 21066626 -141533304 - MIR SINE MIR -94 168 91 4203 111 35 3 chrX 21066678 21067311 -141532619 + MER39B LTR ERV1 1 653 0 297 0 0 0 chrX 21067585 21067618 -141532312 + (TG)n Simple_repeat Simple_repeat 1 33 0 1596 158 89 23 chrX 21068131 21068480 -141531450 - LTR49 LTR ERV1 -25 570 199 507 97 204 10 chrX 21068480 21068583 -141531347 + L1M1 LINE L1 16 138 -7427 * 9717 141 32 2 chrX 21068575 21070124 -141529806 + L1M1 LINE L1 1099 2694 -4871 2027 232 114 25 chrX 21070117 21071182 -141528748 + L1ME1 LINE L1 4787 5929 -237 * 238 289 48 0 chrX 21071649 21071753 -141528177 - L1ME LINE L1 -472 5649 5541 21 57 0 0 chrX 21071774 21071809 -141528121 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chrX 21072228 21072256 -141527674 + AT_rich Low_complexity Low_complexity 1 28 0 43 35 0 0 chrX 21072358 21072415 -141527515 + AT_rich Low_complexity Low_complexity 1 57 0 252 278 93 31 chrX 21072670 21072864 -141527066 + L1M4c LINE L1 1557 1762 -4622 335 348 7 0 chrX 21072951 21073092 -141526838 - MLT1F1 LTR MaLR -413 154 13 431 262 50 25 chrX 21073103 21073408 -141526522 + L1M4c LINE L1 2263 2544 -3838 2328 57 3 23 chrX 21073434 21073735 -141526195 + AluY SINE Alu 1 295 -16 3128 134 12 56 chrX 21073739 21074329 -141525601 + MER4B LTR ERV1 1 564 -46 409 280 23 23 chrX 21074368 21074543 -141525387 + L1M4c LINE L1 2558 2732 -3650 431 37 0 0 chrX 21074887 21074941 -141524989 + MADE1 DNA Mariner 1 54 -26 248 234 106 21 chrX 21076081 21076222 -141523708 - L1M4 LINE L1 -3449 2697 2545 23 33 0 0 chrX 21077239 21077269 -141522661 + AT_rich Low_complexity Low_complexity 1 30 0 2331 72 0 0 chrX 21077445 21077738 -141522192 - AluY SINE Alu -18 293 1 21 36 0 0 chrX 21077865 21077893 -141522037 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 21078080 21078103 -141521827 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chrX 21078110 21078135 -141521795 + (TA)n Simple_repeat Simple_repeat 2 26 0 849 207 89 15 chrX 21078351 21078554 -141521376 - MER20 DNA MER1_type -1 218 1 664 270 13 79 chrX 21078554 21078869 -141521061 - L1MDa LINE L1 -6213 327 34 2212 103 0 3 chrX 21078942 21079243 -141520687 + AluSg SINE Alu 6 305 -5 339 327 5 93 chrX 21079254 21079491 -141520439 + MIR SINE MIR 27 241 -21 2627 130 26 28 chrX 21080431 21081129 -141518801 - L1MA4A LINE L1 -595 5708 5007 3769 131 8 0 chrX 21081129 21081718 -141518212 + L1MA4A LINE L1 5704 6297 -6 704 136 0 0 chrX 21081918 21082021 -141517909 + L1PA10 LINE L1 6056 6158 -10 759 323 87 20 chrX 21082042 21082500 -141517430 - LTR16C LTR ERVL 0 491 3 11264 84 5 1 chrX 21082724 21084236 -141515694 + L1P3 LINE L1 8 1525 -4936 7016 40 5 2 chrX 21084237 21085096 -141514834 + L1PA7 LINE L1 5294 6154 0 1419 205 7 4 chrX 21085586 21085864 -141514066 + AluJo SINE Alu 27 305 -7 23 33 0 0 chrX 21085875 21085905 -141514025 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 21086137 21086159 -141513771 + AT_rich Low_complexity Low_complexity 1 22 0 227 333 0 0 chrX 21086419 21086485 -141513445 + L2 LINE L2 3246 3311 -2 376 307 105 33 chrX 21086861 21087376 -141512554 + L1MC4a LINE L1 5308 5859 -1949 881 210 19 0 chrX 21087980 21088142 -141511788 - FAM SINE Alu -9 166 2 644 236 11 22 chrX 21090054 21090232 -141509698 - L1M4 LINE L1 -1555 4591 4416 2241 238 50 6 chrX 21090248 21090926 -141509004 - L1M4 LINE L1 -2828 3318 2611 1968 120 7 17 chrX 21092466 21092766 -141507164 + AluSx SINE Alu 1 297 -15 22 70 0 0 chrX 21092784 21092827 -141507103 + AT_rich Low_complexity Low_complexity 1 43 0 1029 242 23 0 chrX 21093762 21094018 -141505912 + L2 LINE L2 2264 2525 -789 1078 316 71 27 chrX 21094032 21094142 -141505788 + LTR16A LTR ERVL 16 120 -330 4234 18 2 0 chrX 21094142 21094637 -141505293 + L1PA4 LINE L1 5658 6153 -2 1078 316 71 27 chrX 21094637 21094937 -141504993 + LTR16A LTR ERVL 120 444 -6 969 303 35 9 chrX 21095000 21095343 -141504587 + HERV16 LTR ERVL 74 425 -4571 1079 247 20 37 chrX 21095426 21095831 -141504099 + L1MB8 LINE L1 5758 6155 -23 252 0 0 0 chrX 21095897 21095925 -141504005 + (GA)n Simple_repeat Simple_repeat 2 29 0 213 383 47 8 chrX 21096008 21096136 -141503794 - L2 LINE L2 -1 3271 3139 211 174 0 58 chrX 21096478 21096547 -141503383 + (TA)n Simple_repeat Simple_repeat 2 66 0 1449 33 0 0 chrX 21096650 21096831 -141503099 + L1P LINE L1 5014 5194 -952 272 382 49 20 chrX 21097758 21098004 -141501926 - HAL1b LINE L1 -731 617 365 24 32 0 0 chrX 21098278 21098309 -141501621 + AT_rich Low_complexity Low_complexity 1 31 0 2144 111 3 0 chrX 21098309 21098597 -141501333 - AluSx SINE Alu -23 289 1 2033 124 3 0 chrX 21098768 21099098 -141500832 - AluSx SINE Alu 0 331 1 978 270 157 30 chrX 21099265 21099761 -141500169 + MER34B LTR ERV1 5 563 -2 24 53 0 0 chrX 21100235 21100273 -141499657 + AT_rich Low_complexity Low_complexity 1 38 0 1099 206 5 5 chrX 21100385 21100603 -141499327 + MER20 DNA MER1_type 2 219 0 21 0 0 0 chrX 21101672 21101693 -141498237 + AT_rich Low_complexity Low_complexity 1 21 0 519 241 83 79 chrX 21101827 21102080 -141497850 + L1ME3A LINE L1 4528 4781 -1365 646 274 60 49 chrX 21102128 21102478 -141497452 + L1ME3A LINE L1 5810 6163 -7 763 259 19 34 chrX 21102535 21102865 -141497065 + L1MC5 LINE L1 6928 7250 -735 306 323 0 8 chrX 21102871 21102995 -141496935 + L1MC4a LINE L1 7247 7369 -439 * 505 294 52 52 chrX 21102979 21103479 -141496451 + L1MC5 LINE L1 7260 7759 -202 345 62 0 0 chrX 21103516 21103564 -141496366 + (CA)n Simple_repeat Simple_repeat 2 49 0 592 235 114 79 chrX 21103582 21103989 -141495941 - MER110 LTR ERV1 -5 486 38 292 386 43 14 chrX 21104352 21104559 -141495371 - MIR SINE MIR -18 244 32 193 158 0 53 chrX 21104988 21105026 -141494904 - L2 LINE L2 -6 3307 3272 205 232 29 0 chrX 21105153 21105222 -141494708 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chrX 21106109 21106141 -141493789 + AT_rich Low_complexity Low_complexity 1 32 0 264 59 0 0 chrX 21106141 21106175 -141493755 + (CA)n Simple_repeat Simple_repeat 2 35 0 294 220 0 0 chrX 21106311 21106370 -141493560 - MIR SINE MIR 0 262 204 301 230 37 70 chrX 21106517 21106704 -141493226 - L1MC4 LINE L1 -1 8041 7861 221 256 13 51 chrX 21106891 21106969 -141492961 + MIR SINE MIR 174 248 -14 2061 133 48 25 chrX 21108540 21108894 -141491036 + THE1B LTR MaLR 1 362 -2 11711 96 4 1 chrX 21108896 21110471 -141489459 + THE1B-int LTR MaLR 1 1580 0 1993 111 87 29 chrX 21110471 21110815 -141489115 + THE1B LTR MaLR 1 364 0 314 303 15 23 chrX 21112113 21112245 -141487685 - LTR67 LTR ERVL 0 557 427 2164 210 57 77 chrX 21112507 21112859 -141487071 - L1ME1 LINE L1 -168 5998 5640 1918 161 55 0 chrX 21112859 21113189 -141486741 + MER7A DNA MER2_type 1 346 0 2164 210 57 77 chrX 21113189 21113523 -141486407 - L1ME1 LINE L1 -526 5640 5324 1466 247 93 49 chrX 21113523 21114093 -141485837 + MLT1G1 LTR MaLR 1 595 0 5967 102 20 0 chrX 21114146 21115363 -141484567 - L1PA13 LINE L1 0 6163 4954 227 269 30 0 chrX 21115479 21115546 -141484384 - L1MD3 LINE L1 -1327 6668 6600 36 0 0 0 chrX 21117926 21117962 -141481968 + AT_rich Low_complexity Low_complexity 1 36 0 344 277 135 43 chrX 21118446 21118587 -141481343 - MIR SINE MIR -96 166 13 22 0 0 0 chrX 21118607 21118629 -141481301 + AT_rich Low_complexity Low_complexity 1 22 0 772 128 45 39 chrX 21118632 21118788 -141481142 - L1MA8 LINE L1 -21 6270 6114 2022 205 62 4 chrX 21120174 21120643 -141479287 - L1MDb LINE L1 -5149 1394 899 974 230 37 137 chrX 21120801 21121362 -141478568 - L1MDb LINE L1 -6016 524 20 296 140 0 0 chrX 21121364 21121414 -141478516 - L1ME1 LINE L1 -260 5906 5857 625 158 0 35 chrX 21121433 21121547 -141478383 - HY1 scRNA scRNA -2 110 1 24 67 0 0 chrX 21122332 21122377 -141477553 + AT_rich Low_complexity Low_complexity 1 45 0 339 277 59 8 chrX 21122456 21122575 -141477355 - LTR40b LTR ERVL -337 125 1 1661 145 10 44 chrX 21122823 21123119 -141476811 + AluJo SINE Alu 1 286 -26 21 57 0 0 chrX 21123128 21123163 -141476767 + AT_rich Low_complexity Low_complexity 1 35 0 253 226 19 0 chrX 21123691 21123744 -141476186 + GA-rich Low_complexity Low_complexity 1 54 0 5541 150 43 27 chrX 21123891 21125103 -141474827 - L1MA8 LINE L1 0 6291 5072 4492 146 55 22 chrX 21125096 21125965 -141473965 + L1 LINE L1 4128 5025 -1121 * 275 330 110 9 chrX 21126699 21126808 -141473122 + L2 LINE L2 3138 3257 -15 1183 183 55 31 chrX 21127435 21127692 -141472238 - AluJb SINE Alu -2 310 48 235 230 161 35 chrX 21127768 21127855 -141472075 - MIR SINE MIR -67 195 98 1513 168 81 9 chrX 21128048 21128369 -141471561 - MER2 DNA MER2_type 0 344 1 303 319 48 31 chrX 21128514 21128726 -141471204 + MIR SINE MIR 1 262 0 234 343 34 34 chrX 21128920 21129098 -141470832 + L2 LINE L2 2133 2310 -1004 265 256 33 25 chrX 21129359 21129480 -141470450 + (TATATG)n Simple_repeat Simple_repeat 2 123 0 545 339 57 10 chrX 21130073 21130371 -141469559 + MLT1I LTR MaLR 5 316 -93 29 28 0 0 chrX 21130487 21130523 -141469407 + AT_rich Low_complexity Low_complexity 1 36 0 530 257 31 95 chrX 21131845 21132067 -141467863 + L1ME2 LINE L1 5945 6152 -12 1214 153 5 10 chrX 21132224 21132426 -141467504 + AluJb SINE Alu 3 203 -109 1401 40 0 0 chrX 21132426 21132603 -141467327 - L1PA4 LINE L1 -2238 3908 3732 12321 27 1 6 chrX 21132603 21134887 -141465043 + L1PA4 LINE L1 3915 6155 0 770 111 8 0 chrX 21134893 21135010 -141464920 + AluSg/x SINE Alu 190 307 -3 837 196 78 0 chrX 21135700 21135879 -141464051 - L1MA9 LINE L1 -55 6257 6065 677 157 16 0 chrX 21135881 21136002 -141463928 + L1MA9 LINE L1 5830 5952 -360 23 0 0 0 chrX 21136012 21136035 -141463895 + AT_rich Low_complexity Low_complexity 1 23 0 1156 304 105 22 chrX 21137312 21138204 -141461726 - L1MEc LINE L1 -5347 1049 84 200 281 18 18 chrX 21138252 21138309 -141461621 + MER5B DNA MER1_type 118 174 -4 581 201 10 7 chrX 21138685 21138878 -141461052 + MER58A DNA MER1_type 1 224 0 244 337 0 20 chrX 21140040 21140141 -141459789 - L2 LINE L2 -23 3290 3192 213 39 0 0 chrX 21140720 21140746 -141459184 + (CATA)n Simple_repeat Simple_repeat 2 27 0 30 27 0 0 chrX 21141961 21141998 -141457932 + AT_rich Low_complexity Low_complexity 1 37 0 416 356 85 23 chrX 21143456 21143762 -141456168 - L2 LINE L2 -560 2754 2430 2120 211 14 68 chrX 21144003 21144577 -141455353 - LTR55 LTR ERV -5 543 1 245 315 113 43 chrX 21144741 21145043 -141454887 - L2 LINE L2 0 3313 2991 7943 153 19 30 chrX 21146878 21148294 -141451636 + MER21B-int LTR ERV1 2733 4132 -59 2367 164 118 2 chrX 21148378 21148818 -141451112 + MER21B LTR ERV1 2 492 -371 671 237 0 0 chrX 21148829 21148964 -141450966 + FRAM SINE Alu 1 135 -41 1803 170 83 15 chrX 21149726 21150125 -141449805 + MSTB LTR MaLR 1 426 0 1849 135 43 0 chrX 21352955 21353236 -141246694 + AluSg SINE Alu 1 293 -17 615 282 110 9 chrX 21353440 21353759 -141246171 + L1ME LINE L1 5403 5753 -368 1900 145 72 23 chrX 21353760 21354105 -141245825 + THE1B LTR MaLR 3 364 0 11890 78 15 11 chrX 21354105 21355367 -141244563 + THE1B-int LTR MaLR 1 1272 -308 2151 88 3 7 chrX 21355367 21355664 -141244266 + AluSc SINE Alu 1 296 -13 11890 78 15 11 chrX 21355664 21355975 -141243955 + THE1B-int LTR MaLR 1272 1580 0 1158 108 13 0 chrX 21355978 21356135 -141243795 + THE1B LTR MaLR 4 162 -213 903 89 0 0 chrX 21356137 21356261 -141243669 - AluSc SINE Alu -13 296 173 1109 153 54 15 chrX 21356262 21356465 -141243465 + THE1B LTR MaLR 154 364 0 2138 122 3 0 chrX 21356576 21356887 -141243043 - AluSq SINE Alu -1 312 1 2279 94 0 0 chrX 21357552 21357859 -141242071 - AluSc SINE Alu -2 307 1 22 35 0 0 chrX 21357859 21357888 -141242042 + AT_rich Low_complexity Low_complexity 1 29 0 768 174 0 15 chrX 21357941 21358073 -141241857 - FLAM_A SINE Alu 0 133 4 2253 81 3 3 chrX 21358087 21358396 -141241534 - AluY SINE Alu -2 309 1 267 54 0 0 chrX 21358522 21358559 -141241371 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 893 119 42 0 chrX 21358562 21358705 -141241225 - AluSg/x SINE Alu -35 277 129 23 68 0 0 chrX 21358934 21358978 -141240952 + AT_rich Low_complexity Low_complexity 1 44 0 744 134 42 0 chrX 21358981 21359100 -141240830 - AluJb SINE Alu -187 125 2 288 0 0 0 chrX 21359227 21359259 -141240671 + (CA)n Simple_repeat Simple_repeat 1 32 0 2345 62 0 34 chrX 21359322 21359643 -141240287 - AluY SINE Alu -1 310 1 394 237 130 9 chrX 21359654 21359784 -141240146 - MIR SINE MIR -62 146 10 1388 182 7 7 chrX 21359989 21360258 -141239672 + AluJb SINE Alu 11 279 -33 1477 163 0 38 chrX 21361163 21361451 -141238479 + AluJo SINE Alu 13 289 -23 2061 130 0 13 chrX 21361461 21361777 -141238153 + AluSx SINE Alu 1 312 0 345 259 0 0 chrX 21361798 21361883 -141238047 + L1ME4a LINE L1 5745 5829 -292 1959 112 0 48 chrX 21361890 21362022 -141237908 + AluSx SINE Alu 7 144 -168 2383 83 0 3 chrX 21362022 21362335 -141237595 + AluSq SINE Alu 1 312 -1 1959 112 0 48 chrX 21362335 21362515 -141237415 + AluSx SINE Alu 144 304 -8 2187 100 0 0 chrX 21362515 21362816 -141237114 + AluSx SINE Alu 1 301 -11 191 145 48 129 chrX 21363682 21363744 -141236186 - L2 LINE L2 -18 3254 3198 252 86 0 0 chrX 21363975 21364010 -141235920 + (A)n Simple_repeat Simple_repeat 1 35 0 1732 174 0 16 chrX 21364034 21364168 -141235762 + AluJo SINE Alu 4 139 -173 2003 119 0 10 chrX 21364168 21364461 -141235469 + AluSg SINE Alu 1 290 -20 1732 174 0 16 chrX 21364461 21364631 -141235299 + AluJo SINE Alu 139 303 -9 2033 117 7 23 chrX 21364675 21364983 -141234947 + AluSx SINE Alu 1 303 -9 385 294 108 68 chrX 21365119 21365589 -141234341 + L2 LINE L2 1918 2406 -908 895 161 94 0 chrX 21365918 21366067 -141233863 - FAM SINE Alu -12 163 1 1757 136 7 7 chrX 21366078 21366358 -141233572 - AluSx SINE Alu -19 293 14 381 359 3 32 chrX 21366537 21366760 -141233170 + G-rich Low_complexity Low_complexity 1 216 0 * 413 321 0 43 chrX 21366657 21366901 -141233029 + GA-rich Low_complexity Low_complexity 1 233 0 423 294 0 0 chrX 21366954 21367117 -141232813 + G-rich Low_complexity Low_complexity 1 163 0 328 152 0 0 chrX 21367198 21367244 -141232686 - Alu SINE Alu -253 47 2 444 118 0 0 chrX 21367244 21367312 -141232618 + MER63 DNA MER1_type 952 1019 -43 2573 232 105 42 chrX 21367475 21367575 -141232355 - HAL1 LINE L1 -110 2397 2305 1845 151 84 29 chrX 21367575 21367920 -141232010 + MLT1A1 LTR MaLR 2 365 0 2573 232 105 42 chrX 21367920 21368476 -141231454 - HAL1 LINE L1 -202 2305 1661 2417 56 0 0 chrX 21368476 21368778 -141231152 - AluY SINE Alu -9 302 1 2573 232 105 42 chrX 21368778 21369060 -141230870 - HAL1 LINE L1 -846 1661 1398 1611 158 6 54 chrX 21369101 21369418 -141230512 - AluJb SINE Alu -10 302 1 1724 184 10 0 chrX 21369511 21369816 -141230114 - AluSg SINE Alu -2 308 1 326 229 115 21 chrX 21369889 21369985 -141229945 + L2 LINE L2 3197 3301 -12 2348 84 0 0 chrX 21370855 21371164 -141228766 + AluSc SINE Alu 1 309 0 512 186 60 92 chrX 21371901 21372088 -141227842 - L1ME2 LINE L1 -14 6152 5974 308 226 75 19 chrX 21372208 21372314 -141227616 + MER20 DNA MER1_type 1 112 -107 2289 82 0 0 chrX 21372573 21372865 -141227065 - AluSg SINE Alu -18 292 1 1420 210 102 12 chrX 21373869 21374193 -141225737 - LTR16C LTR ERVL -1 490 138 1745 150 3 13 chrX 21374207 21374521 -141225409 - AluJb SINE Alu -1 311 1 745 329 90 38 chrX 21374524 21374855 -141225075 - L2 LINE L2 -602 2712 2347 2125 96 56 83 chrX 21374855 21375229 -141224701 + THE1B LTR MaLR 1 364 0 745 329 90 38 chrX 21375229 21375377 -141224553 - L2 LINE L2 -967 2347 2208 348 200 71 12 chrX 21375540 21375625 -141224305 + MIR SINE MIR 117 206 -56 293 43 22 0 chrX 21375940 21375986 -141223944 + AluSc SINE Alu 252 298 -1 2056 103 36 7 chrX 21376576 21376877 -141223053 + AluSg SINE Alu 1 310 0 1043 89 0 0 chrX 21377060 21377195 -141222735 - AluY SINE Alu -176 135 1 1548 163 0 34 chrX 21377197 21377522 -141222408 - AluJb SINE Alu 0 315 1 2230 105 0 10 chrX 21378097 21378411 -141221519 - AluSx SINE Alu -1 311 1 1580 155 86 14 chrX 21378614 21378905 -141221025 - AluJb SINE Alu 0 312 1 21 0 0 0 chrX 21379070 21379091 -141220839 + AT_rich Low_complexity Low_complexity 1 21 0 931 114 23 69 chrX 21379968 21380143 -141219787 + L1P4 LINE L1 5596 5762 -403 1705 142 7 7 chrX 21380143 21380438 -141219492 - AluSq SINE Alu -14 299 5 564 295 21 18 chrX 21380443 21380724 -141219206 - AluY SINE Alu -17 294 13 1875 112 8 0 chrX 21381166 21381434 -141218496 - AluSx SINE Alu -38 274 5 1982 115 10 3 chrX 21382159 21382455 -141217475 + AluSx SINE Alu 2 299 -13 1713 139 3 70 chrX 21383321 21383651 -141216279 + AluJo SINE Alu 1 308 -4 2099 112 0 0 chrX 21383654 21383939 -141215991 + AluSx SINE Alu 1 285 -27 333 62 0 0 chrX 21383946 21383994 -141215936 + (CGAAA)n Simple_repeat Simple_repeat 3 50 0 1894 169 97 3 chrX 21384046 21384377 -141215553 + MSTB LTR MaLR 1 362 -64 1039 128 0 0 chrX 21384377 21384533 -141215397 - AluY SINE Alu -15 296 141 560 327 52 12 chrX 21384640 21384781 -141215149 + L1MEd LINE L1 503 660 -5870 2106 78 20 10 chrX 21384781 21385074 -141214856 - AluSq SINE Alu -17 296 1 560 327 52 12 chrX 21385074 21385183 -141214747 + L1MEd LINE L1 660 763 -5767 484 261 90 26 chrX 21385249 21385559 -141214371 + L1MEd LINE L1 1752 2081 -4640 1904 132 3 13 chrX 21385763 21386066 -141213864 + AluSx SINE Alu 1 300 -12 456 233 121 88 chrX 21386069 21386341 -141213589 + L1MEd LINE L1 2372 2654 -3888 1216 230 143 28 chrX 21386368 21386759 -141213171 - MLT1J2 LTR MaLR -14 436 1 400 196 10 31 chrX 21386764 21386861 -141213069 + L1MEd LINE L1 2660 2754 -3786 2240 89 3 13 chrX 21386863 21387177 -141212753 + AluSx SINE Alu 1 311 -1 250 269 120 28 chrX 21387712 21387820 -141212110 - L2 LINE L2 -12 3301 3184 188 29 0 88 chrX 21388511 21388545 -141211385 + (A)n Simple_repeat Simple_repeat 1 31 0 1060 139 27 37 chrX 21389140 21389327 -141210603 - MER5A DNA MER1_type 0 189 5 1852 112 31 20 chrX 21390124 21390418 -141209512 - AluSx SINE Alu -15 297 1 2274 97 0 0 chrX 21390418 21390726 -141209204 - AluSx SINE Alu -4 308 1 2398 80 0 0 chrX 21390855 21391167 -141208763 - AluSx SINE Alu 0 312 1 1135 140 0 45 chrX 21392261 21392411 -141207519 + AluJo SINE Alu 114 254 -58 2557 155 27 0 chrX 21392411 21392824 -141207106 + MSTA LTR MaLR 5 428 0 1135 140 0 45 chrX 21392824 21392873 -141207057 + AluJo SINE Alu 254 304 -8 2167 114 0 0 chrX 21393085 21393392 -141206538 - AluSx SINE Alu -3 309 3 4146 154 48 34 chrX 21393403 21394038 -141205892 + Tigger6a DNA MER2_type 154 804 -793 559 71 71 0 chrX 21394038 21394123 -141205807 - L1MB8 LINE L1 0 6178 6088 4146 154 48 34 chrX 21394123 21394284 -141205646 + Tigger6a DNA MER2_type 804 961 -122 1655 106 64 11 chrX 21394462 21394748 -141205182 + AluSx SINE Alu 12 312 0 2143 122 0 0 chrX 21395778 21396090 -141203840 + AluSx SINE Alu 1 312 0 574 37 25 0 chrX 21396096 21396177 -141203753 + (TA)n Simple_repeat Simple_repeat 2 84 0 589 188 73 129 chrX 21396273 21396545 -141203385 - L1M4b LINE L1 -5394 1465 1209 461 343 0 15 chrX 21397159 21397543 -141202387 + G-rich Low_complexity Low_complexity 1 378 0 594 256 58 0 chrX 21397843 21398015 -141201915 - MIR SINE MIR 0 262 81 219 273 180 33 chrX 21398047 21398197 -141201733 + L2 LINE L2 2917 3088 -184 740 173 23 8 chrX 21398221 21398354 -141201576 - MER5B DNA MER1_type -43 135 1 230 244 61 24 chrX 21398572 21398654 -141201276 + L2 LINE L2 3228 3312 -1 202 134 0 179 chrX 21399205 21399230 -141200700 + MER5A DNA MER1_type 52 59 -130 2117 101 0 7 chrX 21399230 21399528 -141200402 + AluSg SINE Alu 1 296 -14 202 134 0 179 chrX 21399528 21399569 -141200361 + MER5A DNA MER1_type 59 106 -83 601 216 135 18 chrX 21399611 21399833 -141200097 - MER20B DNA MER1_type 0 783 536 180 374 137 6 chrX 21400043 21400225 -141199705 + L2 LINE L2 1716 1921 -1393 2230 103 0 0 chrX 21400665 21400967 -141198963 - AluSq SINE Alu -10 303 2 182 231 0 77 chrX 21401007 21401072 -141198858 - MER5B DNA MER1_type -11 167 108 187 111 28 28 chrX 21401018 21401054 -141198876 + MER5A DNA MER1_type 33 68 -121 1914 131 7 0 chrX 21401084 21401390 -141198540 - AluSx SINE Alu 0 308 1 203 346 44 15 chrX 21401456 21401592 -141198338 - MIR SINE MIR -48 214 75 1287 144 43 0 chrX 21401658 21401866 -141198064 - AluJo SINE Alu -11 301 85 224 279 45 90 chrX 21401868 21401979 -141197951 + MIR3 SINE MIR 55 160 -48 384 211 44 26 chrX 21402088 21402202 -141197728 - MIR SINE MIR -1 261 146 1327 134 13 25 chrX 21402213 21402451 -141197479 - AluSx SINE Alu -20 292 58 1699 121 23 26 chrX 21403061 21403329 -141196601 + AluSq SINE Alu 41 304 -9 2082 93 31 10 chrX 21403375 21403664 -141196266 + AluSx SINE Alu 1 295 -17 3581 72 36 0 chrX 21403706 21404180 -141195750 + L1PA8 LINE L1 5680 6170 -2 21 0 0 0 chrX 21404379 21404400 -141195530 + AT_rich Low_complexity Low_complexity 1 21 0 997 161 0 17 chrX 21404500 21404674 -141195256 + AluSg SINE Alu 1 171 -139 209 261 0 0 chrX 21405120 21405166 -141194764 + GA-rich Low_complexity Low_complexity 3 48 0 214 319 53 11 chrX 21405714 21405808 -141194122 + MIR3 SINE MIR 96 193 -15 436 226 19 9 chrX 21406127 21406233 -141193697 + MIR SINE MIR 12 118 -144 2264 89 0 7 chrX 21406251 21406535 -141193395 + AluSq SINE Alu 1 284 -29 195 42 0 0 chrX 21406535 21406559 -141193371 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 915 160 53 0 chrX 21406689 21406839 -141193091 - AluJo SINE Alu -68 244 87 1750 52 4 48 chrX 21407666 21407895 -141192035 - AluY SINE Alu -10 301 83 2461 89 0 0 chrX 21407928 21408232 -141191698 - AluSg SINE Alu -6 304 1 1747 176 7 17 chrX 21408234 21408535 -141191395 - AluJo SINE Alu -14 298 1 235 65 43 0 chrX 21410259 21410305 -141189625 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2285 105 3 13 chrX 21411067 21411380 -141188550 + AluSg SINE Alu 1 310 0 310 317 108 11 chrX 21411656 21411842 -141188088 + MIR SINE MIR 59 262 0 500 115 0 69 chrX 21413149 21413236 -141186694 + L1MB8 LINE L1 5858 5938 -240 2205 114 3 0 chrX 21413237 21413535 -141186395 + AluSx SINE Alu 1 299 -13 966 212 39 80 chrX 21413553 21413916 -141186014 + L1MC4 LINE L1 7695 8042 0 742 236 167 41 chrX 21416406 21416771 -141183159 + L2 LINE L2 2894 3304 -9 378 309 81 7 chrX 21416816 21416952 -141182978 - MIR SINE MIR -115 147 2 1907 82 8 16 chrX 21417172 21417465 -141182465 + AluSg SINE Alu 31 321 0 232 302 58 0 chrX 21417541 21417627 -141182303 + L2 LINE L2 2969 3059 -213 1564 170 84 33 chrX 21417627 21417986 -141181944 - Charlie4a DNA MER1_type 0 508 132 242 162 69 103 chrX 21418128 21418267 -141181663 + MLT1G3 LTR MaLR 157 363 -232 416 227 27 127 chrX 21418340 21418490 -141181440 - Charlie4a DNA MER1_type -373 135 1 674 131 10 0 chrX 21419256 21419355 -141180575 + AluSg SINE Alu 2 101 -209 1636 93 0 0 chrX 21419553 21419758 -141180172 - AluSg/x SINE Alu -10 300 96 228 135 0 0 chrX 21419841 21419878 -141180052 + (TG)n Simple_repeat Simple_repeat 2 38 0 733 178 0 0 chrX 21420003 21420121 -141179809 + FLAM_C SINE Alu 1 118 -15 24 53 0 0 chrX 21420121 21420159 -141179771 + AT_rich Low_complexity Low_complexity 1 38 0 545 253 148 11 chrX 21420444 21420626 -141179304 - L1MC4a LINE L1 -1905 5903 5697 201 262 60 12 chrX 21420629 21420713 -141179217 - L3 LINE CR1 -167 1410 1323 223 145 0 32 chrX 21421312 21421374 -141178556 + (TA)n Simple_repeat Simple_repeat 1 60 0 272 354 98 23 chrX 21421565 21421658 -141178272 - L2 LINE L2 -1028 2286 2201 2265 116 0 0 chrX 21421658 21421961 -141177969 + AluSx SINE Alu 1 303 -9 272 354 98 23 chrX 21421961 21422254 -141177676 - L2 LINE L2 -1113 2201 1871 1876 162 17 34 chrX 21422565 21422923 -141177007 + LTR1 LTR ERV1 431 782 -3 224 236 153 28 chrX 21422984 21423128 -141176802 - L2 LINE L2 -303 2969 2808 418 175 29 16 chrX 21423445 21423463 -141176467 + L1MA8 LINE L1 5912 5928 -363 766 117 70 0 chrX 21423463 21423591 -141176339 - L1MA8 LINE L1 -4 6287 6151 418 175 29 16 chrX 21423591 21423678 -141176252 + L1MA8 LINE L1 5928 6018 -273 328 311 0 0 chrX 21423687 21423809 -141176121 + T-rich Low_complexity Low_complexity 1 122 0 631 246 61 25 chrX 21423951 21424228 -141175702 + AluJb SINE Alu 1 287 -15 1102 135 109 31 chrX 21424255 21424484 -141175446 - Charlie1b DNA MER1_type -177 346 100 1861 150 14 3 chrX 21424501 21424788 -141175142 - AluSx SINE Alu -22 290 1 1320 188 37 18 chrX 21425393 21425665 -141174265 - AluJb SINE Alu -20 292 16 360 226 9 38 chrX 21425706 21425812 -141174118 - FRAM SINE Alu 0 166 64 22 0 0 0 chrX 21426076 21426098 -141173832 + GC_rich Low_complexity Low_complexity 1 22 0 38 75 0 0 chrX 21426193 21426273 -141173657 + GC_rich Low_complexity Low_complexity 1 80 0 223 105 93 35 chrX 21426300 21426386 -141173544 + (CCGCG)n Simple_repeat Simple_repeat 3 93 0 307 216 13 14 chrX 21426417 21426516 -141173414 + AluJo SINE Alu 79 143 -159 1954 118 7 0 chrX 21426516 21426788 -141173142 + AluSg SINE Alu 25 298 -12 2162 106 0 3 chrX 21427007 21427327 -141172603 - AluSx SINE Alu 0 319 1 1279 61 6 0 chrX 21427363 21427528 -141172402 + L1PA4 LINE L1 5987 6152 -3 442 190 0 0 chrX 21428538 21428617 -141171313 + L1MC5 LINE L1 6997 7075 -886 310 154 0 0 chrX 21428959 21429011 -141170919 - AluSp/q SINE Alu -1 302 251 195 187 13 53 chrX 21429025 21429100 -141170830 + C-rich Low_complexity Low_complexity 3 74 0 483 325 2 24 chrX 21429120 21429525 -141170405 + C-rich Low_complexity Low_complexity 1 396 0 232 154 31 0 chrX 21429732 21429797 -141170133 - L1MA1 LINE L1 -260 6042 5976 2032 133 11 0 chrX 21430142 21430427 -141169503 + AluSq SINE Alu 1 288 -25 25 31 0 0 chrX 21431047 21431079 -141168851 + AT_rich Low_complexity Low_complexity 1 32 0 2429 81 0 7 chrX 21431408 21431704 -141168226 + AluSq SINE Alu 3 296 -17 586 159 9 44 chrX 21431704 21431817 -141168113 - L1MB7 LINE L1 -61 6123 6015 1119 148 68 4 chrX 21431824 21432061 -141167869 + L1MB5 LINE L1 5890 6141 -33 21 0 0 0 chrX 21432146 21432167 -141167763 + GC_rich Low_complexity Low_complexity 1 21 0 2297 84 0 0 chrX 21432590 21432918 -141167012 + AluSq SINE Alu 1 328 0 2203 113 7 10 chrX 21433243 21433552 -141166378 - AluSx SINE Alu -2 310 3 2626 52 3 0 chrX 21434313 21434618 -141165312 - AluY SINE Alu -5 306 1 291 258 65 11 chrX 21434618 21434711 -141165219 - MER5A DNA MER1_type -33 156 59 447 177 93 13 chrX 21435014 21435169 -141164761 + L1ME3A LINE L1 5944 6151 -19 2189 131 17 12 chrX 21435171 21435515 -141164415 + MER47A DNA MER2_type 21 366 0 387 332 107 21 chrX 21435592 21435881 -141164049 + L2 LINE L2 1871 2202 -1112 2242 119 0 0 chrX 21435881 21436184 -141163746 - AluSx SINE Alu -9 303 1 387 332 107 21 chrX 21436184 21436277 -141163653 + L2 LINE L2 2202 2286 -1028 203 181 7 43 chrX 21436468 21436606 -141163324 + (TA)n Simple_repeat Simple_repeat 1 133 0 1143 121 6 12 chrX 21436747 21436913 -141163017 - AluSq SINE Alu -17 296 132 1974 94 0 22 chrX 21436914 21437190 -141162740 - AluSx SINE Alu -16 296 27 1955 84 4 0 chrX 21437190 21437441 -141162489 + AluY SINE Alu 45 296 -15 295 54 0 0 chrX 21437441 21437478 -141162452 - AluSx SINE Alu -265 37 1 2149 70 23 50 chrX 21437795 21438117 -141161813 + AluY SINE Alu 1 311 0 2288 112 0 10 chrX 21438219 21438531 -141161399 - AluSq SINE Alu -4 309 1 2169 94 57 13 chrX 21438788 21439087 -141160843 - AluSx SINE Alu 0 312 1 2173 116 7 3 chrX 21439173 21439476 -141160454 + AluSq SINE Alu 1 304 -9 2082 93 31 10 chrX 21439522 21439811 -141160119 + AluSx SINE Alu 1 295 -17 3594 70 36 0 chrX 21439853 21440327 -141159603 + L1PA8 LINE L1 5680 6170 -2 21 0 0 0 chrX 21440526 21440547 -141159383 + AT_rich Low_complexity Low_complexity 1 21 0 2319 96 0 0 chrX 21440647 21440939 -141158991 + AluSg SINE Alu 1 292 -18 275 200 17 0 chrX 21440943 21441003 -141158927 + L1ME4a LINE L1 5994 6054 -67 330 234 62 125 chrX 21441044 21441236 -141158694 + MARNA DNA Mariner 345 524 -62 1643 169 4 11 chrX 21441325 21441598 -141158332 - AluJo SINE Alu -39 273 3 2075 118 0 23 chrX 21442364 21442670 -141157260 + AluJb SINE Alu 1 299 -13 2119 140 0 13 chrX 21442753 21443061 -141156869 - AluJb SINE Alu -8 304 1 228 268 55 87 chrX 21444933 21445050 -141154880 - MIR SINE MIR -55 207 97 2084 133 0 3 chrX 21445050 21445358 -141154572 + AluSx SINE Alu 1 307 -5 228 268 55 87 chrX 21445358 21445423 -141154507 - MIR SINE MIR -165 97 31 510 256 58 0 chrX 21446359 21446531 -141153399 - MIR SINE MIR 0 262 81 207 267 164 26 chrX 21446563 21446679 -141153251 + L2 LINE L2 2917 3048 -224 676 173 23 8 chrX 21446737 21446870 -141153060 - MER5B DNA MER1_type -43 135 1 189 247 52 26 chrX 21447093 21447170 -141152760 + L2 LINE L2 3234 3312 -1 2239 101 0 7 chrX 21447746 21448044 -141151886 + AluSg SINE Alu 1 296 -14 181 138 0 0 chrX 21448056 21448085 -141151845 + MER5A DNA MER1_type 78 106 -83 616 216 135 18 chrX 21448127 21448349 -141151581 - MER20B DNA MER1_type 0 783 536 481 229 209 46 chrX 21448804 21449163 -141150767 + MLT1L LTR MaLR 8 307 -308 2514 57 7 0 chrX 21449163 21449463 -141150467 - AluY SINE Alu -9 302 1 481 229 209 46 chrX 21449463 21449578 -141150352 + MLT1L LTR MaLR 307 608 -7 2188 83 3 14 chrX 21449764 21450088 -141149842 + AluSg SINE Alu 1 321 0 229 302 58 0 chrX 21450164 21450250 -141149680 + L2 LINE L2 2969 3059 -213 1564 170 84 33 chrX 21450250 21450609 -141149321 - Charlie4a DNA MER1_type 0 508 132 340 184 113 71 chrX 21450751 21450964 -141148966 + MLT1H LTR MaLR 232 549 0 491 200 27 127 chrX 21450964 21451114 -141148816 - Charlie4a DNA MER1_type -373 135 1 183 367 0 25 chrX 21451199 21451278 -141148652 + L2 LINE L2 3234 3310 -3 191 293 0 0 chrX 21451290 21451331 -141148599 + L2 LINE L2 3137 3177 -95 617 181 156 0 chrX 21451341 21451501 -141148429 - MIR SINE MIR -34 228 44 670 293 76 0 chrX 21453077 21453302 -141146628 - MIR SINE MIR -6 256 15 1171 165 58 9 chrX 21453434 21453658 -141146272 - MER90 LTR ERV1 0 614 380 368 200 211 0 chrX 21453656 21453746 -141146184 - MER90 LTR ERV1 -505 109 1 * 1811 152 150 17 chrX 21453879 21454300 -141145630 + Charlie4a DNA MER1_type 32 508 0 530 231 75 8 chrX 21454390 21454524 -141145406 - MIR3 SINE MIR -13 195 53 248 217 100 0 chrX 21454552 21454612 -141145318 - L2 LINE L2 -47 3225 3160 218 315 45 9 chrX 21454623 21454734 -141145196 - L2 LINE L2 -580 2734 2620 347 270 127 53 chrX 21455222 21455411 -141144519 - MIR SINE MIR -40 222 20 2440 90 0 3 chrX 21455414 21455725 -141144205 - AluSx SINE Alu -2 310 1 2315 98 0 0 chrX 21456612 21456909 -141143021 - AluY SINE Alu -14 297 1 1726 123 36 22 chrX 21457134 21457410 -141142520 + AluSg SINE Alu 6 285 -25 236 222 19 0 chrX 21457418 21457472 -141142458 + L1MC/D LINE L1 5599 5653 -468 248 291 87 24 chrX 21457474 21457601 -141142329 + L1MC/D LINE L1 5679 5813 -1995 1211 132 0 0 chrX 21457837 21458011 -141141919 - AluSg/x SINE Alu -10 302 129 1213 91 134 16 chrX 21458966 21459153 -141140777 + AluSg/x SINE Alu 76 284 -28 2217 108 3 0 chrX 21459357 21459654 -141140276 - AluSx SINE Alu -14 298 1 742 280 8 55 chrX 21459727 21459872 -141140058 + MIR SINE MIR 20 170 -92 2049 89 8 0 chrX 21459872 21460130 -141139800 + AluSp SINE Alu 1 260 -53 * 2219 76 3 7 chrX 21460129 21460417 -141139513 + AluSg SINE Alu 9 295 -15 742 280 8 55 chrX 21460130 21460507 -141139423 + MIR SINE MIR 170 244 -18 746 294 0 0 chrX 21460549 21460702 -141139228 - L2 LINE L2 -4 3268 3116 294 318 0 18 chrX 21460759 21460869 -141139061 - MIR SINE MIR -71 137 30 22 56 0 0 chrX 21461835 21461871 -141138059 + AT_rich Low_complexity Low_complexity 1 36 0 2368 98 0 0 chrX 21461876 21462172 -141137758 + AluSx SINE Alu 1 296 -16 2250 99 0 0 chrX 21462321 21462604 -141137326 + AluSx SINE Alu 1 283 -29 2336 103 0 0 chrX 21462944 21463246 -141136684 - AluSq SINE Alu -10 303 2 184 111 28 28 chrX 21463297 21463333 -141136597 + MER5A DNA MER1_type 33 68 -121 1923 45 0 9 chrX 21463362 21463608 -141136322 - AluY SINE Alu 0 307 64 14330 85 14 43 chrX 21463617 21465756 -141134174 - L1M1 LINE L1 -3938 3627 1550 2422 68 7 0 chrX 21466139 21466435 -141133495 + AluSq SINE Alu 1 298 -15 1584 171 0 41 chrX 21467210 21467502 -141132428 - AluSx SINE Alu -3 309 30 623 309 78 0 chrX 21467504 21467621 -141132309 - MIR SINE MIR -16 246 140 2375 97 3 0 chrX 21467621 21467929 -141132001 + AluSx SINE Alu 1 309 -3 623 309 78 0 chrX 21467929 21468028 -141131902 - MIR SINE MIR -122 140 13 1736 115 19 27 chrX 21468923 21469184 -141130746 + AluSx SINE Alu 41 299 -13 1148 61 0 0 chrX 21469208 21469340 -141130590 + AluSq/x SINE Alu 12 143 -169 1936 118 7 0 chrX 21469340 21469612 -141130318 + AluSg SINE Alu 25 298 -12 2133 106 0 3 chrX 21469831 21470151 -141129779 - AluSx SINE Alu 0 319 1 1412 54 0 0 chrX 21470187 21470353 -141129577 + L1PA4 LINE L1 5987 6152 -3 2271 128 0 0 chrX 21470864 21471176 -141128754 - AluSx SINE Alu 0 312 1 2514 80 0 0 chrX 21471305 21471617 -141128313 - AluSx SINE Alu 0 312 1 2229 93 3 0 chrX 21472267 21472558 -141127372 + AluY SINE Alu 1 292 -19 210 37 0 0 chrX 21473017 21473044 -141126886 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1701 77 0 30 chrX 21473110 21473343 -141126587 - L1PA13 LINE L1 0 6163 5938 1529 158 16 4 chrX 21473343 21473597 -141126333 - L1MB5 LINE L1 -32 6142 5886 590 159 9 44 chrX 21473600 21473713 -141126217 + L1MB7 LINE L1 6015 6123 -61 2441 77 0 7 chrX 21473713 21474011 -141125919 - AluSq SINE Alu -17 296 1 8065 106 15 15 chrX 21474011 21474668 -141125262 + Tigger1 DNA MER2_type 46 705 -1713 2515 61 0 0 chrX 21474668 21474964 -141124966 + AluY SINE Alu 16 311 0 8065 106 15 15 chrX 21474964 21475445 -141124485 + Tigger1 DNA MER2_type 704 1184 -1234 2504 65 3 3 chrX 21475446 21475755 -141124175 + AluY SINE Alu 3 311 0 815 115 25 16 chrX 21475755 21475877 -141124053 + Tigger1 DNA MER2_type 1467 1589 -829 1510 139 124 33 chrX 21475877 21476151 -141123779 + AluJo SINE Alu 1 299 -13 1076 92 0 0 chrX 21476151 21476292 -141123638 + Tigger1 DNA MER2_type 2086 2226 -192 722 212 0 0 chrX 21476292 21476424 -141123506 - FLAM_C SINE Alu -10 133 2 1164 125 52 5 chrX 21476427 21476619 -141123311 + Tigger1 DNA MER2_type 2218 2418 0 428 260 88 50 chrX 21476880 21477061 -141122869 - MIR SINE MIR -18 244 57 705 186 8 0 chrX 21477118 21477236 -141122694 - Tigger6a DNA MER2_type -8 1075 957 790 157 0 0 chrX 21477236 21477351 -141122579 + FLAM_A SINE Alu 20 134 -8 4277 153 47 34 chrX 21477354 21477515 -141122415 - Tigger6a DNA MER2_type -636 961 804 588 71 71 0 chrX 21477515 21477600 -141122330 + L1MB8 LINE L1 6088 6178 0 4277 153 47 34 chrX 21477600 21478240 -141121690 - Tigger6a DNA MER2_type -793 804 149 2482 72 0 0 chrX 21478244 21478536 -141121394 + AluSx SINE Alu 1 292 -20 897 142 0 8 chrX 21478545 21478679 -141121251 + FLAM_C SINE Alu 1 133 0 371 167 11 0 chrX 21478710 21478800 -141121130 + (TG)n Simple_repeat Simple_repeat 2 92 0 1156 134 88 10 chrX 21479089 21479138 -141120792 + AluJo SINE Alu 86 130 -182 2115 89 41 24 chrX 21479138 21479430 -141120500 + AluSq SINE Alu 1 297 -16 1156 134 88 10 chrX 21479430 21479574 -141120356 + AluJo SINE Alu 130 294 -18 209 348 159 29 chrX 21479768 21479906 -141120024 - L2 LINE L2 -118 3154 2999 1868 129 50 0 chrX 21479940 21480107 -141119823 - AluSx SINE Alu -20 292 104 1257 22 0 0 chrX 21480107 21480245 -141119685 - L1PA5 LINE L1 -3 6151 6014 1868 129 50 0 chrX 21480245 21480355 -141119575 - AluSx SINE Alu -208 104 1 2331 100 6 3 chrX 21480386 21480697 -141119233 - AluSx SINE Alu 0 312 1 2403 82 0 0 chrX 21481310 21481602 -141118328 - AluSg SINE Alu -18 292 1 1567 238 79 41 chrX 21482610 21482944 -141116986 - LTR16C LTR ERVL -5 486 129 2365 92 3 3 chrX 21482944 21483250 -141116680 - AluSp SINE Alu -1 312 7 1567 238 79 41 chrX 21483250 21483356 -141116574 - LTR16C LTR ERVL -362 129 29 2318 74 7 14 chrX 21483421 21483717 -141116213 - AluSx SINE Alu -16 296 3 585 263 83 0 chrX 21486141 21486297 -141113633 - MLT1J LTR MaLR -338 173 5 512 249 136 37 chrX 21486372 21486517 -141113413 - L1ME4a LINE L1 -76 6045 5916 2334 85 10 0 chrX 21486517 21486823 -141113107 - AluSp SINE Alu -4 309 1 512 249 136 37 chrX 21486823 21487031 -141112899 - L1ME4a LINE L1 -205 5916 5657 496 323 0 6 chrX 21487015 21487179 -141112751 - L1MEc LINE L1 -3311 3071 2909 * 531 130 0 0 chrX 21487188 21487257 -141112673 - AluJ/FLAM SINE Alu -241 71 3 366 217 7 94 chrX 21487258 21487296 -141112634 - L1MEc LINE L1 -3755 2627 2587 2389 86 3 13 chrX 21487296 21487611 -141112319 - AluSx SINE Alu 0 312 1 366 217 7 94 chrX 21487611 21487710 -141112220 - L1MEc LINE L1 -3795 2587 2502 1205 230 143 28 chrX 21487715 21488106 -141111824 + MLT1J2 LTR MaLR 1 436 -14 379 269 66 70 chrX 21488133 21488360 -141111570 - L1MEc LINE L1 -3888 2496 2271 1997 132 3 13 chrX 21488408 21488711 -141111219 - AluSx SINE Alu -12 300 1 522 261 90 26 chrX 21488915 21489225 -141110705 - L1MEc LINE L1 -4640 1923 1594 770 259 75 50 chrX 21489291 21489400 -141110530 - L1MEc LINE L1 -5767 605 500 2214 78 20 10 chrX 21489400 21489693 -141110237 + AluSq SINE Alu 1 296 -17 770 259 75 50 chrX 21489693 21489903 -141110027 - L1MEc LINE L1 -5872 500 278 299 310 0 10 chrX 21489949 21490049 -141109881 - L1ME4a LINE L1 -458 5663 5565 3173 242 72 42 chrX 21490313 21490687 -141109243 + HAL1 LINE L1 2 363 -2144 2604 148 16 69 chrX 21490687 21491180 -141108750 + MLT1C LTR MaLR 1 467 0 3173 242 72 42 chrX 21491180 21491610 -141108320 + HAL1 LINE L1 363 844 -1663 2333 107 0 3 chrX 21491610 21491919 -141108011 + AluSx SINE Alu 1 308 -4 3173 242 72 42 chrX 21491919 21492109 -141107821 + HAL1 LINE L1 844 1027 -1480 2340 94 10 0 chrX 21492112 21492420 -141107510 + AluSp SINE Alu 1 311 -2 1694 151 7 56 chrX 21492515 21492819 -141107111 + AluJb SINE Alu 1 289 -23 2680 232 104 44 chrX 21492873 21493155 -141106775 + HAL1 LINE L1 1398 1662 -845 2516 56 0 0 chrX 21493155 21493457 -141106473 + AluY SINE Alu 1 302 -9 2680 232 104 44 chrX 21493457 21494013 -141105917 + HAL1 LINE L1 1662 2302 -205 1970 145 84 29 chrX 21494013 21494358 -141105572 - MLT1A1 LTR MaLR 0 365 2 2680 232 104 44 chrX 21494358 21494472 -141105458 + HAL1 LINE L1 2302 2408 -99 992 123 24 194 chrX 21494621 21494688 -141105242 - MER63 DNA MER1_type -43 1017 940 1928 153 0 10 chrX 21494688 21494988 -141104942 + AluJb SINE Alu 1 297 -15 992 123 24 194 chrX 21494988 21495155 -141104775 - MER63 DNA MER1_type -120 940 856 2280 93 7 0 chrX 21495155 21495446 -141104484 - AluSq SINE Alu -20 293 1 992 123 24 194 chrX 21495446 21495551 -141104379 - MER63 DNA MER1_type -204 856 735 346 308 77 20 chrX 21495582 21495777 -141104153 - L1ME3A LINE L1 -3 6167 5962 634 184 77 46 chrX 21495856 21496052 -141103878 - L1MC5 LINE L1 -430 7531 7330 2093 142 3 0 chrX 21496065 21496374 -141103556 - AluJb SINE Alu -2 310 1 2046 119 6 49 chrX 21496903 21497230 -141102700 + AluSq SINE Alu 1 313 0 1381 249 22 78 chrX 21498562 21499061 -141100869 + LTR16C LTR ERVL 13 483 -8 220 264 11 69 chrX 21499296 21499383 -141100547 + MIR3 SINE MIR 116 197 -11 431 153 0 0 chrX 21499386 21499458 -141100472 + L1M4 LINE L1 3571 3642 -2504 776 236 48 5 chrX 21499459 21499649 -141100281 + L1MD3 LINE L1 7571 7751 -231 1880 94 76 4 chrX 21499649 21499924 -141100006 - AluSx SINE Alu -17 295 1 776 236 48 5 chrX 21499924 21499946 -141099984 + L1MD3 LINE L1 7751 7981 -1 259 262 84 49 chrX 21500626 21500756 -141099174 - L1M4 LINE L1 -3734 2412 2288 2398 81 0 0 chrX 21500756 21501051 -141098879 - AluSx SINE Alu -17 295 1 259 262 84 49 chrX 21501051 21501183 -141098747 - L1M4 LINE L1 -3858 2288 2141 1764 132 62 4 chrX 21501270 21501542 -141098388 - AluJo SINE Alu -24 288 1 2500 56 0 3 chrX 21501837 21502139 -141097791 - AluY SINE Alu -9 302 2 2449 86 0 3 chrX 21502385 21502698 -141097232 + AluSx SINE Alu 1 312 0 2188 95 3 3 chrX 21502700 21502995 -141096935 + AluY SINE Alu 1 295 -16 21 71 0 0 chrX 21503287 21503329 -141096601 + AT_rich Low_complexity Low_complexity 1 42 0 3434 204 33 18 chrX 21503486 21504578 -141095352 - L1ME1 LINE L1 -5 6144 4850 2212 82 17 0 chrX 21504578 21504871 -141095059 + AluSp SINE Alu 1 298 -15 3434 204 33 18 chrX 21504871 21505192 -141094738 - L1ME1 LINE L1 -1299 4850 4535 2151 204 121 31 chrX 21505192 21505736 -141094194 - MLT1E LTR MaLR 0 593 1 1744 213 52 2 chrX 21505736 21506163 -141093767 - L1ME1 LINE L1 -1590 4539 4092 2095 114 7 0 chrX 21506171 21506469 -141093461 - AluSx SINE Alu -11 301 2 2292 91 3 0 chrX 21506536 21506844 -141093086 - AluSp SINE Alu -3 310 2 246 32 0 0 chrX 21506846 21506877 -141093053 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2119 95 0 3 chrX 21506878 21507162 -141092768 - AluSq SINE Alu -30 283 1 323 207 26 69 chrX 21507195 21507311 -141092619 - L1ME1 LINE L1 -4730 1580 1470 651 235 68 51 chrX 21507338 21507457 -141092473 - L1ME1 LINE L1 -4862 1257 1142 1866 130 33 3 chrX 21507457 21507757 -141092173 - AluJb SINE Alu -3 309 1 651 235 68 51 chrX 21507757 21508016 -141091914 - L1ME1 LINE L1 -4977 1142 939 1870 142 0 7 chrX 21508016 21508312 -141091618 - AluSx SINE Alu -18 294 1 303 312 129 53 chrX 21508315 21508726 -141091204 - L1ME1 LINE L1 -5269 850 472 1759 109 98 0 chrX 21508726 21509000 -141090930 - AluSx SINE Alu -11 301 1 303 312 129 53 chrX 21509000 21509287 -141090643 - L1ME1 LINE L1 -5647 472 82 1966 135 0 0 chrX 21509287 21509592 -141090338 + AluSx SINE Alu 3 307 0 303 312 129 53 chrX 21509592 21509680 -141090250 - L1ME1 LINE L1 -6037 82 2 340 318 139 20 chrX 21509682 21509833 -141090097 - L1ME4a LINE L1 -118 6072 5904 1270 219 148 23 chrX 21509841 21510225 -141089705 - LTR16A LTR ERVL 0 450 19 358 280 23 21 chrX 21510371 21510485 -141089445 - MLT1J LTR MaLR -301 210 110 233 250 21 0 chrX 21510442 21510490 -141089440 - LTR67 LTR ERVL -400 157 109 * 242 265 0 48 chrX 21510536 21510583 -141089347 - MLT1L LTR MaLR -536 79 36 2372 75 7 0 chrX 21510583 21510891 -141089039 + AluSp SINE Alu 1 310 -3 242 265 0 48 chrX 21510891 21510926 -141089004 - MLT1L LTR MaLR -579 36 1 1057 163 54 15 chrX 21511002 21511205 -141088725 - THE1C LTR MaLR 0 364 154 903 89 0 0 chrX 21511206 21511330 -141088600 + AluSc SINE Alu 173 296 -13 1158 108 13 0 chrX 21511332 21511489 -141088441 - THE1C LTR MaLR -213 162 4 11925 78 15 12 chrX 21511492 21511803 -141088127 - THE1B-int LTR MaLR 0 1580 1271 2168 87 3 7 chrX 21511803 21512102 -141087828 - AluSc SINE Alu -11 298 1 11925 78 15 12 chrX 21512102 21513365 -141086565 - THE1B-int LTR MaLR -309 1271 1 1930 145 73 20 chrX 21513365 21513709 -141086221 - THE1B LTR MaLR 0 364 3 615 282 110 9 chrX 21513710 21514029 -141085901 - L1ME4a LINE L1 -368 5822 5472 1888 125 43 0 chrX 21514234 21514515 -141085415 - AluSg SINE Alu -17 293 1 342 279 151 48 chrX 21515265 21515537 -141084393 - L1ME4a LINE L1 -3989 2407 2108 2361 57 7 3 chrX 21515581 21515877 -141084053 - AluY SINE Alu -14 297 1 451 160 140 113 chrX 21515904 21516054 -141083876 + L1MC4 LINE L1 6767 7010 -1032 2122 116 0 3 chrX 21516057 21516368 -141083562 + AluSx SINE Alu 1 310 -2 2935 94 32 5 chrX 21516554 21516988 -141082942 - L1MA4A LINE L1 -6 6297 5852 310 143 0 0 chrX 21517205 21517254 -141082676 - AluJo SINE Alu -2 300 252 1090 160 0 5 chrX 21517258 21517445 -141082485 - AluJo SINE Alu -126 186 1 231 204 0 0 chrX 21517516 21517565 -141082365 + (TA)n Simple_repeat Simple_repeat 1 49 0 282 214 71 0 chrX 21517565 21517649 -141082281 + L1MC4 LINE L1 6614 6703 -1339 226 261 0 22 chrX 21517615 21517707 -141082223 - L1MC4 LINE L1 -1339 6703 6614 * 2337 65 0 13 chrX 21517740 21518046 -141081884 - AluY SINE Alu -9 302 1 590 220 148 94 chrX 21518072 21518248 -141081682 + MIR SINE MIR 10 175 -87 2244 40 0 53 chrX 21518248 21518550 -141081380 + AluY SINE Alu 1 286 -25 198 0 0 0 chrX 21518557 21518579 -141081351 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 590 220 148 94 chrX 21518579 21518617 -141081313 + MIR SINE MIR 180 244 -18 338 287 43 0 chrX 21518642 21518757 -141081173 - HAL1b LINE L1 -819 529 410 449 194 112 0 chrX 21518774 21518872 -141081058 + MIR SINE MIR 5 113 -149 384 270 127 67 chrX 21519041 21519308 -141080622 + MLT1K LTR MaLR 185 467 -121 292 302 10 0 chrX 21519326 21519422 -141080508 + MIR SINE MIR 159 255 -7 2065 108 3 3 chrX 21519481 21519788 -141080142 + AluSx SINE Alu 1 307 -5 282 239 0 30 chrX 21519821 21519888 -141080042 - HAL1b LINE L1 -1062 286 222 199 235 39 0 chrX 21519994 21520045 -141079885 + L2 LINE L2 2094 2146 -1168 390 271 167 21 chrX 21520332 21520476 -141079454 + MER5A DNA MER1_type 25 189 0 2248 85 0 0 chrX 21520536 21520829 -141079101 - AluSx SINE Alu -19 293 1 2273 74 7 0 chrX 21520948 21521247 -141078683 - AluY SINE Alu -10 301 1 348 200 71 12 chrX 21521713 21521798 -141078132 - MIR SINE MIR -56 206 117 941 355 42 46 chrX 21521961 21522109 -141077821 + L2 LINE L2 2208 2355 -959 2113 96 56 88 chrX 21522109 21522485 -141077445 - THE1B LTR MaLR 0 364 1 941 355 42 46 chrX 21522485 21522819 -141077111 + L2 LINE L2 2355 2689 -625 1506 171 3 11 chrX 21522819 21523106 -141076824 + AluJb SINE Alu 1 285 -27 941 355 42 46 chrX 21523106 21523117 -141076813 + L2 LINE L2 2689 2699 -615 2080 62 29 7 chrX 21523117 21523428 -141076502 + AluSx SINE Alu 1 317 0 941 355 42 46 chrX 21523428 21523643 -141076287 + L2 LINE L2 2699 2916 -398 1758 123 14 11 chrX 21523644 21523929 -141076001 - AluSg SINE Alu -24 286 1 2074 127 0 13 chrX 21524488 21524804 -141075126 + AluSx SINE Alu 1 312 0 356 239 36 90 chrX 21524825 21524917 -141075013 + L1ME4a LINE L1 5745 5840 -281 2237 85 7 0 chrX 21524917 21525211 -141074719 + AluSx SINE Alu 7 302 -10 450 29 44 0 chrX 21525211 21525279 -141074651 + (TA)n Simple_repeat Simple_repeat 2 72 0 356 239 36 90 chrX 21525279 21525352 -141074578 + L1ME4a LINE L1 5838 5902 -219 676 183 75 116 chrX 21525375 21525643 -141074287 - L1M4b LINE L1 -5394 1465 1209 696 289 43 67 chrX 21525702 21526093 -141073837 - L1M4b LINE L1 -5676 1179 798 692 278 39 50 chrX 21526142 21526423 -141073507 - L1M4b LINE L1 -6581 278 1 1983 104 55 0 chrX 21526455 21526744 -141073186 + AluSq SINE Alu 1 305 -8 623 134 185 0 chrX 21526904 21527023 -141072907 - FRAM SINE Alu -5 171 31 496 221 83 7 chrX 21527128 21527273 -141072657 + MER103 DNA DNA 10 165 -1 221 320 92 111 chrX 21527563 21527869 -141072061 - L2 LINE L2 -20 3252 2953 1971 81 0 8 chrX 21528046 21528307 -141071623 + AluSx SINE Alu 46 304 -8 1060 157 0 0 chrX 21528309 21528481 -141071449 + AluSg/x SINE Alu 136 307 -5 603 168 68 43 chrX 21528481 21528642 -141071288 - L1MC5 LINE L1 -789 7172 7008 335 194 0 0 chrX 21528743 21528810 -141071120 - MIR SINE MIR -93 115 49 2427 70 0 0 chrX 21530999 21531299 -141068631 - AluSq SINE Alu -13 300 1 806 182 0 89 chrX 21531552 21531755 -141068175 + FRAM SINE Alu 1 176 0 2221 89 0 7 chrX 21531760 21532064 -141067866 + AluSg SINE Alu 1 302 -8 220 272 100 61 chrX 21532337 21532517 -141067413 + L2 LINE L2 3030 3216 -97 519 224 6 58 chrX 21532640 21532814 -141067116 - AluSq SINE Alu -146 167 3 638 134 104 55 chrX 21532850 21533014 -141066916 - Charlie4 DNA MER1_type -1 1960 1789 266 288 0 0 chrX 21533070 21533129 -141066801 + polypurine Low_complexity Low_complexity 3 61 0 26 0 0 0 chrX 21533728 21533754 -141066176 + AT_rich Low_complexity Low_complexity 1 26 0 1951 118 0 23 chrX 21533929 21534235 -141065695 - AluJb SINE Alu -13 299 1 1543 95 0 0 chrX 21535152 21535362 -141064568 + AluSq SINE Alu 54 263 -50 299 113 16 0 chrX 21535362 21535424 -141064506 + (TA)n Simple_repeat Simple_repeat 2 64 0 823 137 0 0 chrX 21535426 21535543 -141064387 - FLAM_C SINE Alu -26 117 1 1009 150 75 0 chrX 21535959 21536146 -141063784 - MER20 DNA MER1_type -1 218 18 26 30 0 0 chrX 21537520 21537553 -141062377 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chrX 21537837 21537875 -141062055 + AT_rich Low_complexity Low_complexity 1 38 0 2040 122 0 13 chrX 21538127 21538438 -141061492 + AluSq SINE Alu 3 309 -4 306 289 0 21 chrX 21538530 21538649 -141061281 - AluY SINE Alu 0 301 207 37 17 7 0 chrX 21538664 21538748 -141061182 + GC_rich Low_complexity Low_complexity 1 39 0 201 346 0 0 chrX 21538828 21538880 -141061050 + C-rich Low_complexity Low_complexity 4 55 0 198 206 0 0 chrX 21538966 21539034 -141060896 + C-rich Low_complexity Low_complexity 1 68 0 202 386 15 23 chrX 21539061 21539193 -141060737 + C-rich Low_complexity Low_complexity 6 136 0 46 86 0 0 chrX 21541386 21541502 -141058428 + GC_rich Low_complexity Low_complexity 1 116 0 231 196 22 0 chrX 21541720 21541766 -141058164 + G-rich Low_complexity Low_complexity 1 47 0 27 49 0 0 chrX 21541774 21541815 -141058115 + GC_rich Low_complexity Low_complexity 1 41 0 26 64 0 0 chrX 21542997 21543044 -141056886 + AT_rich Low_complexity Low_complexity 1 47 0 980 154 23 0 chrX 21543462 21543637 -141056293 - AluJb SINE Alu 0 312 134 1919 87 42 7 chrX 21543638 21543967 -141055963 - AluSx SINE Alu 0 312 1 1465 112 5 9 chrX 21544331 21544546 -141055384 + AluSx SINE Alu 1 214 -98 1522 172 20 26 chrX 21544904 21545206 -141054724 + AluJo SINE Alu 1 300 -12 319 300 88 31 chrX 21545224 21545384 -141054546 - MLT1J LTR MaLR -342 169 1 989 305 41 71 chrX 21545396 21545984 -141053946 + L1M4 LINE L1 3097 3666 -2480 1758 150 7 10 chrX 21545984 21546314 -141053616 + AluJb SINE Alu 1 312 0 989 305 41 71 chrX 21546314 21546357 -141053573 + L1M4 LINE L1 3666 3709 -2437 1964 171 102 37 chrX 21546357 21546386 -141053544 + LOR1b LTR ERV1 1 27 -434 2017 105 0 32 chrX 21546386 21546701 -141053229 - AluSx SINE Alu -7 305 1 1964 171 102 37 chrX 21546701 21547104 -141052826 + LOR1b LTR ERV1 27 461 0 1888 123 29 13 chrX 21547104 21547413 -141052517 + LOR1b-int LTR ERV1 1 314 -7806 2095 115 0 0 chrX 21547413 21547717 -141052213 + AluSx SINE Alu 1 304 -8 3107 99 24 14 chrX 21547727 21548565 -141051365 + LOR1b-int LTR ERV1 1032 1920 -6200 2263 64 4 0 chrX 21548584 21548888 -141051042 + AluY SINE Alu 1 305 0 2152 83 0 29 chrX 21548888 21549202 -141050728 + AluSx SINE Alu 8 312 0 1885 143 3 3 chrX 21549204 21549504 -141050426 + AluJb SINE Alu 1 300 -12 714 153 8 17 chrX 21549534 21549652 -141050278 + FLAM_A SINE Alu 5 121 -12 624 118 93 124 chrX 21549652 21549738 -141050192 + L1MB2 LINE L1 6016 6096 -75 2130 100 23 0 chrX 21549738 21550039 -141049891 + AluSg SINE Alu 1 308 -2 624 118 93 124 chrX 21550039 21550113 -141049817 + L1MB2 LINE L1 6096 6171 0 320 167 0 0 chrX 21551550 21551598 -141048332 - FAM SINE Alu -51 124 77 203 353 35 12 chrX 21551599 21551684 -141048246 - MIR SINE MIR -158 104 18 401 340 109 0 chrX 21552085 21552241 -141047689 - L2 LINE L2 -1 3271 3099 2083 93 7 27 chrX 21552285 21552585 -141047345 + AluSg SINE Alu 1 294 -16 354 213 150 8 chrX 21552668 21552795 -141047135 - L1MC5 LINE L1 -134 7827 7683 383 307 103 60 chrX 21552936 21553231 -141046699 - L2 LINE L2 -426 2888 2580 1868 120 34 3 chrX 21553231 21553523 -141046407 - AluSq SINE Alu -12 301 1 3439 141 36 21 chrX 21553551 21554162 -141045768 - L1MB5 LINE L1 -8 6166 5547 1860 98 24 0 chrX 21554175 21554429 -141045501 - AluSx SINE Alu -52 260 1 341 263 18 0 chrX 21554455 21554569 -141045361 - L1M4 LINE L1 -2658 3488 3373 879 119 21 14 chrX 21554571 21554714 -141045216 + BC200 scRNA scRNA 1 144 -56 755 246 165 23 chrX 21554724 21555119 -141044811 - L1M4 LINE L1 -2781 3365 2915 342 294 49 34 chrX 21555201 21555405 -141044525 - L1MA8 LINE L1 -191 6100 5894 274 278 46 40 chrX 21555291 21555442 -141044488 - L1MD2 LINE L1 -355 6004 5853 * 1977 189 52 55 chrX 21555425 21555706 -141044224 - L1M4 LINE L1 -3227 2919 2639 2328 179 64 27 chrX 21555706 21556192 -141043738 - MLT1D LTR MaLR -1 504 1 1977 189 52 55 chrX 21556192 21556219 -141043711 - L1M4 LINE L1 -3507 2639 2613 756 175 0 16 chrX 21556219 21556345 -141043585 + FLAM_A SINE Alu 1 124 -9 1977 189 52 55 chrX 21556345 21556617 -141043313 - L1M4 LINE L1 -3533 2613 2340 25 0 0 0 chrX 21557130 21557155 -141042775 + AT_rich Low_complexity Low_complexity 1 25 0 1896 121 3 44 chrX 21557155 21557452 -141042478 - AluSq SINE Alu -28 285 1 373 168 95 0 chrX 21557452 21557547 -141042383 + MIR SINE MIR 99 202 -60 622 94 0 0 chrX 21557631 21557716 -141042214 - AluJ/FLAM SINE Alu -224 88 4 2138 86 25 0 chrX 21557774 21558053 -141041877 - AluSp SINE Alu -17 296 11 2233 97 3 7 chrX 21558060 21558359 -141041571 - AluSx SINE Alu -14 298 1 2384 71 0 0 chrX 21558404 21558717 -141041213 - AluY SINE Alu 0 313 1 287 277 0 0 chrX 21558741 21558806 -141041124 + MIR SINE MIR 45 109 -153 1926 110 7 55 chrX 21558806 21559116 -141040814 - AluSx SINE Alu -3 309 15 2209 68 0 34 chrX 21559232 21559526 -141040404 + AluY SINE Alu 2 285 -26 6380 91 3 1 chrX 21559626 21560498 -141039432 - L1PA11 LINE L1 0 6174 5301 1862 106 34 27 chrX 21560563 21560856 -141039074 + AluSx SINE Alu 1 295 -17 2008 127 33 10 chrX 21561035 21561334 -141038596 - AluSx SINE Alu -6 306 1 603 208 0 0 chrX 21561382 21561512 -141038418 + L1MB7 LINE L1 6039 6168 -16 1973 132 10 7 chrX 21561519 21561823 -141038107 + AluSg SINE Alu 1 305 -5 461 106 0 0 chrX 21561835 21561901 -141038029 + Alu SINE Alu 234 299 -13 5420 126 51 124 chrX 21561943 21563579 -141036351 - pTR5 LTR ERV1 0 2438 743 1534 150 39 4 chrX 21563579 21563833 -141036097 + AluJo SINE Alu 31 293 -19 1072 75 0 0 chrX 21563868 21564001 -141035929 + AluSp SINE Alu 1 133 -180 22 56 0 0 chrX 21564421 21564457 -141035473 + GC_rich Low_complexity Low_complexity 1 36 0 1756 160 4 4 chrX 21566598 21566879 -141033051 + AluJb SINE Alu 1 281 -31 225 0 0 0 chrX 21567046 21567071 -141032859 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2292 79 0 0 chrX 21567073 21567350 -141032580 - AluSc SINE Alu -32 277 1 937 142 196 78 chrX 21568254 21568550 -141031380 + MER96B DNA MER1_type? 1 331 -86 1139 156 93 113 chrX 21569366 21569719 -141030211 - LTR40c LTR ERVL -119 346 1 586 287 53 27 chrX 21569866 21570085 -141029845 - HERVL LTR ERVL -1831 3654 3421 868 199 82 6 chrX 21570112 21570283 -141029647 - LTR33 LTR ERVL -337 184 1 1298 199 24 120 chrX 21570285 21570448 -141029482 - MER20B DNA MER1_type -343 440 332 436 136 8 168 chrX 21570448 21570573 -141029357 + U6 snRNA snRNA 2 106 -1 1298 199 24 120 chrX 21570573 21570785 -141029145 - MER20B DNA MER1_type -451 332 101 2390 90 0 0 chrX 21570952 21571252 -141028678 + AluSx SINE Alu 1 300 -12 998 193 74 0 chrX 21571409 21571585 -141028345 + MLT1D LTR MaLR 1 189 -316 1742 151 41 24 chrX 21571587 21571879 -141028051 + AluJb SINE Alu 1 297 -15 754 251 4 87 chrX 21571994 21572108 -141027822 - L1MC4 LINE L1 -1143 6899 6777 248 91 23 0 chrX 21572108 21572152 -141027778 + (TTG)n Simple_repeat Simple_repeat 1 45 0 2064 81 4 0 chrX 21572152 21572411 -141027519 - AluSp SINE Alu -53 260 1 754 251 4 87 chrX 21572411 21572526 -141027404 - L1MC4 LINE L1 -1263 6779 6688 1849 202 117 44 chrX 21572527 21573032 -141026898 + MLT1E LTR MaLR 1 542 -51 2078 121 24 0 chrX 21573046 21573344 -141026586 - AluSx SINE Alu -7 305 1 890 128 8 0 chrX 21573346 21573471 -141026459 - AluJb SINE Alu -186 126 1 390 219 0 38 chrX 21573587 21573692 -141026238 - AluYb8 SINE Alu -1 307 207 * 599 184 0 0 chrX 21573686 21573784 -141026146 - MLT1D LTR MaLR -316 189 92 1070 122 7 0 chrX 21573786 21573934 -141025996 - AluSg/x SINE Alu -69 243 95 968 99 8 0 chrX 21574577 21574731 -141025199 + AluY SINE Alu 151 305 0 727 101 0 0 chrX 21574771 21574870 -141025060 + LOR1-int LTR ERV1 2363 2461 -5659 1943 124 25 4 chrX 21574871 21575146 -141024784 + AluSx SINE Alu 1 281 -31 186 71 0 0 chrX 21575146 21575174 -141024756 + (CTAA)n Simple_repeat Simple_repeat 1 28 0 763 90 0 131 chrX 21575188 21575333 -141024597 + FLAM_C SINE Alu 1 126 -7 390 305 94 10 chrX 21575399 21575762 -141024168 + L1ME LINE L1 5197 5586 -535 1215 165 55 15 chrX 21575932 21576243 -141023687 - MLT2B2 LTR ERVL 0 515 138 2219 102 0 10 chrX 21576243 21576538 -141023392 - AluSx SINE Alu -20 292 1 2038 97 47 53 chrX 21576558 21576782 -141023148 + MER46B DNA MER2_type 1 99 -2632 2208 94 7 26 chrX 21576782 21577090 -141022840 - AluSx SINE Alu -10 302 1 2038 97 47 53 chrX 21577090 21577226 -141022704 + MER46B DNA MER2_type 99 234 -2 22 35 0 0 chrX 21577624 21577653 -141022277 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chrX 21577744 21577803 -141022127 + AT_rich Low_complexity Low_complexity 1 59 0 1470 186 3 50 chrX 21577999 21578300 -141021630 - AluJb SINE Alu -25 287 1 2166 117 3 0 chrX 21578495 21578785 -141021145 - AluSx SINE Alu -21 291 1 825 195 0 30 chrX 21578820 21578984 -141020946 + FRAM SINE Alu 1 159 -7 1644 148 22 57 chrX 21579368 21579685 -141020245 + AluJo SINE Alu 1 306 -6 605 236 21 31 chrX 21580163 21580354 -141019576 + L1MC5 LINE L1 6990 7178 -783 1728 106 0 4 chrX 21580354 21580580 -141019350 - AluSp SINE Alu -86 227 3 5764 189 37 15 chrX 21580583 21581786 -141018144 + L1MB8 LINE L1 4094 5352 -826 2350 104 0 0 chrX 21581786 21582083 -141017847 + AluSx SINE Alu 1 297 -15 5764 189 37 15 chrX 21582083 21582573 -141017357 + L1MB8 LINE L1 5352 5830 -348 1213 153 45 33 chrX 21582573 21582815 -141017115 + MLT1C LTR MaLR 1 245 -222 2345 61 7 20 chrX 21582818 21583114 -141016816 + AluY SINE Alu 1 292 -19 273 167 19 0 chrX 21583918 21583972 -141015958 - L2 LINE L2 -4 3309 3255 1740 133 5 93 chrX 21584813 21584938 -141014992 + L1MB8 LINE L1 4964 5098 -1048 2340 92 0 3 chrX 21584938 21585241 -141014689 - AluSg SINE Alu -8 302 1 1740 133 5 93 chrX 21585241 21585514 -141014416 + L1MB8 LINE L1 5098 5327 -819 754 179 0 30 chrX 21585516 21585650 -141014280 + AluJo SINE Alu 6 135 -177 2042 153 0 28 chrX 21585674 21585995 -141013935 + AluJb SINE Alu 1 312 0 1220 186 23 5 chrX 21586008 21586229 -141013701 + AluJo SINE Alu 84 308 -4 666 155 0 17 chrX 21586230 21586346 -141013584 + L1MB8 LINE L1 5320 5433 -733 724 147 8 39 chrX 21586353 21586482 -141013448 + AluJo/FLAM SINE Alu 6 130 -182 2310 70 0 20 chrX 21586482 21586806 -141013124 + AluY SINE Alu 1 311 0 2926 173 47 70 chrX 21586807 21586863 -141013067 + L1MB8 LINE L1 5451 5507 -671 1974 128 20 23 chrX 21586863 21587168 -141012762 + AluSx SINE Alu 1 304 -8 2926 173 47 70 chrX 21587168 21587275 -141012655 + L1MB8 LINE L1 5507 5615 -563 2294 103 0 0 chrX 21587275 21587575 -141012355 - AluSx SINE Alu -12 300 1 2926 173 47 70 chrX 21587575 21588098 -141011832 + L1MB8 LINE L1 5615 6122 -56 2178 123 0 0 chrX 21588098 21588400 -141011530 - AluSx SINE Alu -10 302 1 2926 173 47 70 chrX 21588400 21588456 -141011474 + L1MB8 LINE L1 6122 6178 0 689 201 39 7 chrX 21588468 21588622 -141011308 + MIR SINE MIR 45 203 -59 21 36 0 0 chrX 21588648 21588676 -141011254 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chrX 21588751 21588777 -141011153 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2169 78 3 11 chrX 21588783 21589067 -141010863 - AluSx SINE Alu -30 282 1 1985 133 3 3 chrX 21589089 21589382 -141010548 - AluJo SINE Alu -19 293 1 385 117 17 0 chrX 21589386 21589446 -141010484 - Alu SINE Alu -3 299 239 2297 96 7 0 chrX 21589585 21589878 -141010052 + AluSp SINE Alu 1 295 -18 1881 97 43 53 chrX 21590206 21590344 -141009586 + AluSg SINE Alu 1 139 -171 2518 50 0 10 chrX 21590344 21590642 -141009288 + AluY SINE Alu 2 296 -15 1881 97 43 53 chrX 21590642 21590802 -141009128 + AluSg SINE Alu 139 296 -14 236 284 59 0 chrX 21590832 21590934 -141008996 + L1M4 LINE L1 3601 3708 -2438 1582 157 51 14 chrX 21590995 21591289 -141008641 + AluJo SINE Alu 8 312 0 521 286 43 47 chrX 21591315 21591413 -141008517 + L1M4 LINE L1 3902 3999 -2147 1527 104 0 48 chrX 21591413 21591644 -141008286 + AluSg/x SINE Alu 85 304 -8 521 286 43 47 chrX 21591644 21591867 -141008063 + L1M4 LINE L1 3999 4222 -1924 223 48 24 24 chrX 21591895 21591937 -141007993 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 436 85 0 0 chrX 21591945 21592004 -141007926 - Alu SINE Alu -258 60 2 1420 183 106 35 chrX 21592025 21592218 -141007712 - HsTC2 DNA Tc2 -2 1896 1718 1970 101 4 4 chrX 21592218 21592485 -141007445 + AluSx SINE Alu 1 267 -45 1420 183 106 35 chrX 21592485 21592696 -141007234 - HsTC2 DNA Tc2 -180 1718 1287 236 213 21 0 chrX 21592687 21592734 -141007196 - HsTC2 DNA Tc2 -1360 538 491 * 917 222 30 15 chrX 21592735 21592933 -141006997 - HsTC2 DNA Tc2 -1696 202 2 958 74 0 0 chrX 21593433 21593554 -141006376 + AluSg/x SINE Alu 177 297 -15 2496 65 0 0 chrX 21593558 21593867 -141006063 + AluY SINE Alu 2 310 -1 250 178 0 0 chrX 21593877 21593922 -141006008 - L1MD1 LINE L1 -24 6218 6174 1182 120 223 21 chrX 21593922 21594197 -141005733 + MER1B DNA MER1_type 1 338 -1 1871 153 84 12 chrX 21594198 21594531 -141005399 - L1MD1 LINE L1 -61 6181 5825 1282 177 0 9 chrX 21594537 21594763 -141005167 - AluJb SINE Alu -6 306 83 3249 177 101 74 chrX 21594768 21596088 -141003842 - L1MD1 LINE L1 -528 5714 4479 2447 87 0 10 chrX 21596088 21596400 -141003530 - AluSc SINE Alu 0 309 1 3249 177 101 74 chrX 21596400 21596515 -141003415 - L1MD1 LINE L1 -1763 4479 4369 1259 216 3 26 chrX 21596537 21596843 -141003087 - AluSq SINE Alu 0 303 5 1377 119 3 126 chrX 21597398 21597524 -141002406 - AluYb8 SINE Alu -67 251 178 207 0 0 0 chrX 21597524 21597547 -141002383 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1377 119 3 126 chrX 21597547 21597706 -141002224 - AluYb8 SINE Alu -140 178 1 815 165 0 0 chrX 21597709 21597842 -141002088 - FLAM_C SINE Alu 0 133 1 234 184 20 0 chrX 21597842 21597891 -141002039 + MER96B DNA MER1_type? 328 377 -40 573 277 73 0 chrX 21597918 21598055 -141001875 - MER58B DNA MER1_type -2 339 193 2244 114 3 3 chrX 21598232 21598539 -141001391 - AluSq SINE Alu -6 307 1 2242 84 49 0 chrX 21599503 21599790 -141000140 + AluSp SINE Alu 6 306 -7 2300 99 0 3 chrX 21599792 21600094 -140999836 + AluSx SINE Alu 1 301 -11 2218 93 0 27 chrX 21600094 21600393 -140999537 + AluSx SINE Alu 1 292 -20 437 127 2 213 chrX 21600921 21601097 -140998833 - L1MB4 LINE L1 -9 6171 6021 580 173 10 0 chrX 21601205 21601309 -140998621 + AluSg/x SINE Alu 189 293 -16 2113 107 11 4 chrX 21601870 21602180 -140997750 + AluSx SINE Alu 1 312 0 21 0 0 0 chrX 21602244 21602265 -140997665 + AT_rich Low_complexity Low_complexity 1 21 0 1609 133 24 16 chrX 21602420 21602669 -140997261 + AluSq SINE Alu 1 251 -62 2491 149 33 57 chrX 21602700 21602945 -140996985 + L1MA4 LINE L1 5543 5772 -528 2164 107 33 3 chrX 21602945 21603245 -140996685 + AluSx SINE Alu 1 309 -3 2491 149 33 57 chrX 21603245 21603490 -140996440 + L1MA4 LINE L1 5772 6021 -279 1532 167 18 29 chrX 21604150 21604426 -140995504 - AluJo SINE Alu -39 273 1 2256 100 0 3 chrX 21604922 21605213 -140994717 - AluSq SINE Alu -23 290 1 2325 93 0 0 chrX 21605539 21605830 -140994100 + AluSg SINE Alu 2 292 -18 405 77 0 0 chrX 21605830 21605882 -140994048 + THE1B LTR MaLR 313 364 0 1425 173 91 43 chrX 21605882 21606211 -140993719 - MLT1D LTR MaLR -155 350 6 239 149 64 0 chrX 21606216 21606278 -140993652 + L1MC3 LINE L1 5954 6019 -328 632 199 39 125 chrX 21606282 21606430 -140993500 + L1MC3 LINE L1 6068 6227 -1558 2634 91 25 39 chrX 21606430 21606528 -140993402 + L1MA8 LINE L1 5852 5950 -341 2441 76 6 13 chrX 21606528 21606843 -140993087 + AluSp SINE Alu 1 313 0 2634 91 25 39 chrX 21606843 21607185 -140992745 + L1MA8 LINE L1 5950 6286 -5 632 199 39 125 chrX 21607185 21607319 -140992611 + L1MC3 LINE L1 6227 6323 -1462 2305 104 7 0 chrX 21607319 21607626 -140992304 + AluSx SINE Alu 1 309 -3 632 199 39 125 chrX 21607626 21607653 -140992277 + L1MC3 LINE L1 6323 6351 -1434 2092 154 24 62 chrX 21607659 21608082 -140991848 - LTR54 LTR ERV1 -2 508 102 1099 97 7 0 chrX 21608084 21608257 -140991673 - AluSg/x SINE Alu 0 309 136 2631 85 14 6 chrX 21608436 21608801 -140991129 + L1PA11 LINE L1 5807 6174 0 2453 68 0 0 chrX 21609135 21609428 -140990502 - AluSg SINE Alu -17 293 1 2212 108 3 0 chrX 21609566 21609861 -140990069 - AluSp SINE Alu -17 296 1 269 101 0 0 chrX 21609863 21609909 -140990021 + L1MB7 LINE L1 6125 6172 -9 231 236 101 0 chrX 21609907 21609996 -140989934 + L1MC4 LINE L1 6605 6702 -1340 * 411 267 0 0 chrX 21609996 21610086 -140989844 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 759 228 0 0 chrX 21610086 21610266 -140989664 + (TA)n Simple_repeat Simple_repeat 1 180 0 573 275 0 0 chrX 21610235 21610413 -140989517 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 698 226 11 0 chrX 21610415 21610592 -140989338 + (CATA)n Simple_repeat Simple_repeat 2 180 0 2056 101 0 0 chrX 21610599 21610875 -140989055 - AluSg1 SINE Alu -33 276 1 430 287 8 58 chrX 21610998 21611256 -140988674 - AluY SINE Alu -8 293 49 2178 113 3 3 chrX 21611962 21612264 -140987666 + AluSc SINE Alu 1 302 -7 2209 94 0 26 chrX 21612425 21612732 -140987198 - AluSq SINE Alu -14 299 1 210 162 0 0 chrX 21613388 21613425 -140986505 + A-rich Low_complexity Low_complexity 1 37 0 243 0 0 0 chrX 21613522 21613549 -140986381 + (T)n Simple_repeat Simple_repeat 1 27 0 904 187 4 128 chrX 21613558 21613703 -140986227 + AluJo SINE Alu 1 104 -208 2311 101 16 0 chrX 21613703 21614010 -140985920 + AluSx SINE Alu 1 312 0 904 187 4 128 chrX 21614010 21614115 -140985815 + AluJo SINE Alu 104 220 -92 367 209 35 23 chrX 21614115 21614201 -140985729 + AluJo SINE Alu 86 172 -130 2170 149 0 0 chrX 21614286 21614594 -140985336 - AluSx SINE Alu -4 308 1 294 240 0 27 chrX 21614615 21614690 -140985240 - L1MC5 LINE L1 -73 7888 7816 1618 135 12 8 chrX 21614822 21615074 -140984856 - AluSx SINE Alu -59 253 1 2177 101 0 23 chrX 21615457 21615763 -140984167 - AluSx SINE Alu -13 299 1 1851 162 7 3 chrX 21615865 21616168 -140983762 - AluJb SINE Alu -8 304 1 462 103 0 0 chrX 21616280 21616348 -140983582 - AluS SINE Alu -244 69 2 2560 35 0 3 chrX 21616995 21617285 -140982645 + AluY SINE Alu 1 289 -22 3283 233 130 40 chrX 21617406 21618436 -140981494 - L1MC4 LINE L1 -6 8036 6875 2258 115 3 6 chrX 21618436 21618749 -140981181 - AluSx SINE Alu 0 312 1 3283 233 130 40 chrX 21618749 21618952 -140980978 - L1MC4 LINE L1 -1167 6875 6692 1340 170 132 0 chrX 21619324 21619589 -140980341 - AluJo SINE Alu -2 300 1 2131 123 7 7 chrX 21619837 21620147 -140979783 + AluSx SINE Alu 3 312 0 191 36 36 0 chrX 21620658 21620686 -140979244 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2000 76 49 4 chrX 21620687 21620951 -140978979 - AluSx SINE Alu -36 276 1 2199 120 0 0 chrX 21621612 21621911 -140978019 - AluSx SINE Alu -13 299 1 360 289 56 56 chrX 21621953 21622095 -140977835 - MER5B DNA MER1_type 0 178 37 2428 78 0 0 chrX 21622706 21623000 -140976930 + AluSg SINE Alu 1 294 -16 2130 108 11 0 chrX 21623010 21623297 -140976633 + AluSx SINE Alu 1 290 -22 1478 194 60 0 chrX 21623309 21623561 -140976369 + Tigger7 DNA MER2_type 1 267 -2220 577 194 0 0 chrX 21623559 21623657 -140976273 + Tigger7 DNA MER2_type 2394 2491 0 * 755 171 67 57 chrX 21623660 21623746 -140976184 + L1MB7 LINE L1 5472 5556 -610 2131 124 0 0 chrX 21623746 21624053 -140975877 + AluSx SINE Alu 1 307 0 755 171 67 57 chrX 21624053 21624158 -140975772 + L1MB7 LINE L1 5556 5666 -500 2384 111 0 0 chrX 21624159 21624466 -140975464 + AluSx SINE Alu 1 307 -5 198 0 0 0 chrX 21624590 21624612 -140975318 + (CA)n Simple_repeat Simple_repeat 2 23 0 1744 156 63 3 chrX 21624816 21625149 -140974781 + L1MB7 LINE L1 5832 6184 0 275 328 115 8 chrX 21625228 21625463 -140974467 + L1M4 LINE L1 4007 4266 -1880 291 73 0 0 chrX 21625591 21625632 -140974298 - AluSp/q SINE Alu -6 297 257 516 144 18 9 chrX 21625744 21625858 -140974072 + L1MDa LINE L1 1295 1444 -4938 180 0 0 0 chrX 21625880 21625900 -140974030 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 2006 136 0 0 chrX 21625904 21626184 -140973746 - AluSx SINE Alu -31 281 2 6601 102 33 55 chrX 21626186 21626287 -140973643 - Tigger1 DNA MER2_type -941 1477 1375 1837 171 0 0 chrX 21626287 21626579 -140973351 + AluJo SINE Alu 1 292 -20 6601 102 33 55 chrX 21626579 21626660 -140973270 - Tigger1 DNA MER2_type -1043 1375 1294 2391 85 0 0 chrX 21626660 21626955 -140972975 - AluSx SINE Alu -17 295 1 6601 102 33 55 chrX 21626955 21627123 -140972807 - Tigger1 DNA MER2_type -1124 1294 1124 1604 192 14 7 chrX 21627123 21627410 -140972520 - AluJo SINE Alu -23 289 1 6601 102 33 55 chrX 21627410 21628140 -140971790 - Tigger1 DNA MER2_type -1294 1124 418 327 200 22 72 chrX 21628260 21628440 -140971490 + (CCCCG)n Simple_repeat Simple_repeat 4 174 0 2272 70 0 48 chrX 21628601 21628917 -140971013 + AluY SINE Alu 1 301 -10 843 165 0 67 chrX 21628997 21629161 -140970769 + FRAM SINE Alu 1 153 -13 363 273 131 17 chrX 21629319 21629495 -140970435 + L2 LINE L2 1996 2191 -1123 1784 83 0 0 chrX 21629709 21629938 -140969992 - AluSg/x SINE Alu -7 302 74 1183 167 33 49 chrX 21630067 21630372 -140969558 - AluSx SINE Alu -2 300 1 228 257 14 27 chrX 21630688 21630762 -140969168 + GA-rich Low_complexity Low_complexity 5 77 0 182 179 26 26 chrX 21630914 21630992 -140968938 + GA-rich Low_complexity Low_complexity 4 81 0 2428 83 3 0 chrX 21631351 21631651 -140968279 + AluSp SINE Alu 1 301 -12 1660 180 31 14 chrX 21631887 21632176 -140967754 + AluJb SINE Alu 1 294 -18 505 118 12 24 chrX 21632787 21632872 -140967058 + AluSp/q SINE Alu 215 298 -15 737 240 69 0 chrX 21632885 21633060 -140966870 + L2 LINE L2 2506 2692 -622 2330 105 0 0 chrX 21633462 21633758 -140966172 + AluSx SINE Alu 1 296 -16 2073 124 21 3 chrX 21633769 21634059 -140965871 + AluSx SINE Alu 1 295 -17 1617 172 19 70 chrX 21635114 21635323 -140964607 + L1M4 LINE L1 4615 4833 -1313 2393 61 0 0 chrX 21635323 21635601 -140964329 - AluY SINE Alu -31 280 3 1617 172 19 70 chrX 21635601 21635616 -140964314 + L1M4 LINE L1 4833 4847 -1299 2410 25 14 4 chrX 21635616 21635927 -140964003 - AluY SINE Alu 0 314 1 1617 172 19 70 chrX 21635927 21636073 -140963857 + L1M4 LINE L1 4847 4968 -1178 872 148 0 0 chrX 21636073 21636201 -140963729 + AluSq/x SINE Alu 1 128 -184 2287 67 0 7 chrX 21636591 21636873 -140963057 - AluY SINE Alu -12 299 20 327 208 58 142 chrX 21636893 21636921 -140963009 - L1M4 LINE L1 -2918 3228 3199 932 202 180 28 chrX 21636921 21637238 -140962692 + MLT1A1 LTR MaLR 1 365 0 327 208 58 142 chrX 21637238 21637405 -140962525 - L1M4 LINE L1 -2947 3199 3060 1905 141 0 4 chrX 21637405 21637681 -140962249 - AluJb SINE Alu -37 275 1 327 208 58 142 chrX 21637681 21637758 -140962172 - L1M4 LINE L1 -3086 3060 2978 686 177 0 70 chrX 21637777 21637840 -140962090 - L1ME2 LINE L1 -9 6155 6089 2281 103 3 10 chrX 21637840 21638152 -140961778 - AluSg SINE Alu 0 310 1 686 177 0 70 chrX 21638152 21638246 -140961684 - L1ME2 LINE L1 -75 6089 6009 288 175 0 0 chrX 21638325 21638388 -140961542 + C-rich Low_complexity Low_complexity 1 63 0 1158 54 7 7 chrX 21638728 21638876 -140961054 + AluY SINE Alu 148 295 -16 760 179 22 107 chrX 21638896 21639214 -140960716 + L1M4 LINE L1 2971 3261 -2885 2178 96 3 10 chrX 21639221 21639523 -140960407 + AluY SINE Alu 1 300 -11 1025 147 25 0 chrX 21639534 21639691 -140960239 + FRAM SINE Alu 1 161 -15 490 249 46 15 chrX 21639697 21639894 -140960036 + L1M4 LINE L1 3257 3459 -2687 2295 164 57 5 chrX 21639902 21640304 -140959626 + Tigger1 DNA MER2_type 6 428 -1990 307 143 48 0 chrX 21640426 21640489 -140959441 - AluSc SINE Alu -5 294 229 1683 159 11 7 chrX 21640516 21640799 -140959131 - AluSg SINE Alu -26 284 1 486 169 0 0 chrX 21640843 21640920 -140959010 - AluJ/FLAM SINE Alu -234 78 2 1595 202 67 63 chrX 21640920 21641366 -140958564 - L1M4 LINE L1 -1189 4957 4510 936 82 16 0 chrX 21641366 21641488 -140958442 - AluSq/x SINE Alu -189 124 1 1131 75 7 0 chrX 21641622 21641769 -140958161 + AluY SINE Alu 156 303 -8 694 226 39 0 chrX 21641770 21641925 -140958005 - L1MC3 LINE L1 -1926 5859 5699 2180 132 3 0 chrX 21641925 21642228 -140957702 + AluSx SINE Alu 1 304 -8 2238 95 30 10 chrX 21642236 21642532 -140957398 + AluSx SINE Alu 1 302 -10 1345 173 31 17 chrX 21642535 21642824 -140957106 + AluJb SINE Alu 5 297 -15 285 266 81 0 chrX 21642861 21642985 -140956945 + L1ME LINE L1 5583 5716 -405 623 141 0 0 chrX 21643002 21643094 -140956836 - AluJ/FLAM SINE Alu -210 102 11 2488 93 0 0 chrX 21643434 21643746 -140956184 + AluSx SINE Alu 1 312 0 22 0 0 0 chrX 21643749 21643771 -140956159 + AT_rich Low_complexity Low_complexity 1 22 0 2113 131 3 16 chrX 21644093 21644406 -140955524 + AluJo SINE Alu 1 309 -3 1530 162 3 52 chrX 21644421 21644730 -140955200 + AluJb SINE Alu 9 302 -10 1949 145 13 10 chrX 21645018 21645322 -140954608 - AluJb SINE Alu -7 305 1 691 200 36 0 chrX 21645360 21645500 -140954430 - L1MB8 LINE L1 -6 6172 6028 268 266 13 0 chrX 21645645 21645724 -140954206 - L1MB8 LINE L1 -174 6010 5931 795 211 12 12 chrX 21645724 21645890 -140954040 - AluSg/x SINE Alu -8 304 139 486 328 49 16 chrX 21646317 21646622 -140953308 + L1M4 LINE L1 3136 3450 -2696 1937 112 31 0 chrX 21646772 21647032 -140952898 - AluSx SINE Alu -44 268 1 284 236 9 47 chrX 21647041 21647147 -140952783 + L1MC5 LINE L1 7077 7178 -783 1712 105 0 4 chrX 21647147 21647375 -140952555 - AluSx SINE Alu -85 227 1 710 159 0 29 chrX 21647376 21647514 -140952416 + L1MB8 LINE L1 6045 6178 0 1604 164 4 7 chrX 21647521 21647802 -140952128 + AluJo SINE Alu 1 280 -32 669 58 0 0 chrX 21647802 21647888 -140952042 + (GA)n Simple_repeat Simple_repeat 1 86 0 572 171 9 9 chrX 21648539 21648644 -140951286 - FLAM_A SINE Alu -36 106 2 2096 90 0 75 chrX 21648759 21649080 -140950850 + AluSc SINE Alu 2 298 -11 5031 137 52 20 chrX 21649086 21650021 -140949909 + L1MC2 LINE L1 5197 6163 -181 2431 81 3 0 chrX 21650026 21650336 -140949594 + AluY SINE Alu 1 311 0 2956 155 29 48 chrX 21650501 21650718 -140949212 + L1MB8 LINE L1 5477 5697 -481 2415 86 0 3 chrX 21650718 21651031 -140948899 + AluSq SINE Alu 1 312 -1 2956 155 29 48 chrX 21651031 21651400 -140948530 + L1MB8 LINE L1 5697 6052 -126 2148 124 3 13 chrX 21651402 21651709 -140948221 - AluSq SINE Alu -9 304 1 2069 95 14 3 chrX 21651710 21652006 -140947924 - L1MC1 LINE L1 -9 6324 6026 288 196 22 11 chrX 21652008 21652100 -140947830 - L1MDb LINE L1 -5204 879 787 872 190 0 17 chrX 21652107 21652286 -140947644 + AluJb SINE Alu 136 311 -1 910 251 27 120 chrX 21652306 21653188 -140946742 - L1MDb LINE L1 -5286 784 3 2111 88 46 56 chrX 21653203 21653386 -140946544 - AluSx SINE Alu -9 303 123 2345 97 3 10 chrX 21653386 21653697 -140946233 - AluSg SINE Alu -1 309 1 2111 88 46 56 chrX 21653697 21653819 -140946111 - AluSx SINE Alu -189 123 1 433 320 33 12 chrX 21653821 21654065 -140945865 - L1MEc LINE L1 -4683 1713 1465 2521 73 0 0 chrX 21654089 21654390 -140945540 - AluY SINE Alu -10 301 1 28 29 0 0 chrX 21655095 21655130 -140944800 + AT_rich Low_complexity Low_complexity 1 35 0 1288 109 35 0 chrX 21655130 21655332 -140944598 - L1MA8 LINE L1 -3 6288 6080 556 262 35 7 chrX 21655824 21655969 -140943961 + MIR SINE MIR 36 184 -78 311 315 34 14 chrX 21656552 21656698 -140943232 + MIR SINE MIR 95 243 -19 2276 107 0 3 chrX 21656744 21657042 -140942888 - AluSx SINE Alu -15 297 1 1618 157 63 18 chrX 21657663 21657949 -140941981 + AluJb SINE Alu 1 299 -13 2555 156 65 2 chrX 21658145 21658625 -140941305 + L1MB7 LINE L1 5658 6167 -17 2344 125 37 12 chrX 21658836 21659245 -140940685 - L1MB3 LINE L1 -1 6182 5764 2710 147 147 24 chrX 21659335 21659783 -140940147 + MER6A DNA MER2_type 2 528 -337 2101 122 0 7 chrX 21659783 21660086 -140939844 - AluSx SINE Alu -11 301 1 2710 147 147 24 chrX 21660086 21660173 -140939757 + MER6A DNA MER2_type 528 603 -2 1990 133 18 0 chrX 21660242 21660528 -140939402 - AluSx SINE Alu -21 291 1 2655 17 3 0 chrX 21661148 21661439 -140938491 + AluY SINE Alu 14 305 -6 2438 79 3 0 chrX 21661451 21661754 -140938176 + AluSq SINE Alu 1 304 -9 2066 117 0 0 chrX 21661844 21662117 -140937813 + AluSg SINE Alu 1 273 -37 26 0 0 0 chrX 21662128 21662154 -140937776 + AT_rich Low_complexity Low_complexity 1 26 0 444 313 12 12 chrX 21662164 21662330 -140937600 + AluSq SINE Alu 3 168 -145 2727 141 1 7 chrX 21662899 21662997 -140936933 + L1PA4 LINE L1 5393 5490 -665 2400 84 0 10 chrX 21662997 21663308 -140936622 + AluSc SINE Alu 1 308 -1 2727 141 1 7 chrX 21663308 21663708 -140936222 + L1PA4 LINE L1 5490 5887 -268 2129 135 0 6 chrX 21664734 21665046 -140934884 + AluSx SINE Alu 1 310 -2 2408 77 3 7 chrX 21665202 21665499 -140934431 - AluSc SINE Alu -13 296 1 756 238 16 16 chrX 21665506 21665699 -140934231 - AluJo SINE Alu 0 312 120 485 169 0 0 chrX 21665832 21665915 -140934015 + AluS SINE Alu 222 304 -6 2164 81 3 7 chrX 21666016 21666325 -140933605 - AluSx SINE Alu 0 308 1 358 211 0 0 chrX 21666338 21666409 -140933521 + L1MC/D LINE L1 5647 5717 -2278 23 78 0 0 chrX 21666409 21666460 -140933470 + AT_rich Low_complexity Low_complexity 1 51 0 2143 87 0 14 chrX 21666465 21666740 -140933190 - AluSx SINE Alu -41 271 1 1789 163 14 7 chrX 21667805 21668099 -140931831 + AluSx SINE Alu 1 296 -16 2378 86 0 6 chrX 21668099 21668412 -140931518 + AluY SINE Alu 1 311 0 2477 56 3 23 chrX 21668459 21668763 -140931167 + AluY SINE Alu 1 298 -13 215 231 0 19 chrX 21669313 21669365 -140930565 - MIR SINE MIR -141 121 71 22 0 0 0 chrX 21669432 21669454 -140930476 + AT_rich Low_complexity Low_complexity 1 22 0 2207 111 0 7 chrX 21669457 21669764 -140930166 + AluY SINE Alu 1 305 -6 2155 106 13 7 chrX 21669956 21670259 -140929671 + AluSx SINE Alu 1 305 -7 2463 77 3 0 chrX 21670351 21670649 -140929281 + AluSp SINE Alu 1 299 -14 2271 108 0 3 chrX 21670811 21671116 -140928814 + AluSx SINE Alu 1 304 -8 584 216 27 40 chrX 21671151 21671299 -140928631 + MIR SINE MIR 71 216 -46 209 231 99 33 chrX 21671307 21671398 -140928532 - MIR SINE MIR -95 167 71 1934 128 3 7 chrX 21671661 21671949 -140927981 - AluSp SINE Alu -26 287 1 468 190 5 138 chrX 21671965 21672160 -140927770 + L1MC5 LINE L1 6818 6986 -975 315 263 0 13 chrX 21672181 21672257 -140927673 + L1M4 LINE L1 -302 4294967068 -6774 585 174 0 43 chrX 21672258 21672373 -140927557 - AluJb SINE Alu 0 312 203 1866 275 51 21 chrX 21672387 21672951 -140926979 + L1M4 LINE L1 -175 405 -6141 2137 119 0 0 chrX 21672956 21673234 -140926696 + AluSx SINE Alu 1 278 -34 225 0 0 0 chrX 21673237 21673262 -140926668 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1849 191 70 34 chrX 21673263 21673760 -140926170 + L1M4 LINE L1 730 1244 -5302 1957 144 0 7 chrX 21673760 21674051 -140925879 + AluSx SINE Alu 1 289 -23 293 111 37 0 chrX 21674675 21674729 -140925201 + GA-rich Low_complexity Low_complexity 3 58 0 652 221 32 29 chrX 21674729 21674955 -140924975 + L1M4 LINE L1 1393 2025 -4540 354 169 28 0 chrX 21674923 21675008 -140924922 + L1M4 LINE L1 4951 5037 -1607 * 676 215 151 16 chrX 21675011 21675197 -140924733 + MIR SINE MIR 23 233 -29 339 252 80 40 chrX 21675197 21675348 -140924582 - HAL1b LINE L1 -819 529 410 408 194 112 0 chrX 21675365 21675463 -140924467 + MIR SINE MIR 5 113 -149 359 251 131 71 chrX 21675632 21675899 -140924031 + MLT1K LTR MaLR 185 467 -121 256 302 10 0 chrX 21675917 21676013 -140923917 + MIR SINE MIR 159 255 -7 2156 111 3 3 chrX 21676072 21676379 -140923551 + AluSx SINE Alu 1 307 -5 286 239 0 30 chrX 21676412 21676479 -140923451 - HAL1b LINE L1 -1062 286 222 182 235 39 0 chrX 21676585 21676636 -140923294 + L2 LINE L2 2094 2146 -1168 293 263 188 23 chrX 21676927 21677060 -140922870 + MER5A DNA MER1_type 29 183 -6 29 28 0 0 chrX 21677234 21677270 -140922660 + AT_rich Low_complexity Low_complexity 1 36 0 994 214 134 17 chrX 21677841 21678131 -140921799 + MER5C DNA MER1_type 1 324 0 319 294 46 51 chrX 21678132 21678329 -140921601 + L1M4b LINE L1 3275 3470 -3174 964 196 6 0 chrX 21678332 21678505 -140921425 + AluJb SINE Alu 137 310 -2 2341 91 3 0 chrX 21678627 21678924 -140921006 - AluSx SINE Alu -14 298 1 248 275 22 44 chrX 21678950 21679041 -140920889 - MLT1J LTR MaLR -41 470 382 1636 172 13 20 chrX 21679178 21679480 -140920450 + AluJb SINE Alu 1 300 -12 317 300 88 31 chrX 21679498 21679658 -140920272 - MLT1J LTR MaLR -342 169 1 663 314 41 71 chrX 21679670 21680258 -140919672 + L1M4b LINE L1 3595 4164 -2480 1875 150 7 10 chrX 21680258 21680591 -140919339 + AluJb SINE Alu 1 312 0 663 314 41 71 chrX 21680591 21680635 -140919295 + L1M4b LINE L1 4164 4208 -2436 2140 95 0 41 chrX 21680663 21680978 -140918952 - AluSx SINE Alu -10 302 1 180 0 0 0 chrX 21680986 21681006 -140918924 + (T)n Simple_repeat Simple_repeat 1 20 0 2037 161 119 5 chrX 21681006 21681384 -140918546 + LOR1b LTR ERV1 41 461 0 1873 123 29 13 chrX 21681384 21681693 -140918237 + LOR1b-int LTR ERV1 1 314 -7806 2219 115 0 0 chrX 21681693 21681997 -140917933 + AluSx SINE Alu 1 304 -8 2126 156 177 16 chrX 21681998 21682485 -140917445 + LTR57-int LTR ERVL 1032 1596 -3747 * 3175 99 36 4 chrX 21682348 21682844 -140917086 + LOR1b-int LTR ERV1 1409 1920 -6200 2407 64 4 0 chrX 21682863 21683167 -140916763 + AluY SINE Alu 1 305 0 727 101 0 0 chrX 21683207 21683306 -140916624 + LOR1b-int LTR ERV1 2363 2461 -5659 1943 124 25 4 chrX 21683307 21683582 -140916348 + AluSx SINE Alu 1 281 -31 186 71 0 0 chrX 21683582 21683610 -140916320 + (CTAA)n Simple_repeat Simple_repeat 1 28 0 763 90 0 131 chrX 21683624 21683769 -140916161 + FLAM_C SINE Alu 1 126 -7 390 305 94 10 chrX 21683835 21684198 -140915732 + L1ME LINE L1 5197 5586 -535 1215 165 55 15 chrX 21684368 21684679 -140915251 - MLT2B2 LTR ERVL 0 515 138 2220 106 0 7 chrX 21684679 21684971 -140914959 - AluSg SINE Alu -20 290 1 2540 178 90 135 chrX 21684971 21685109 -140914821 - L1MC5 LINE L1 -251 7710 7567 1602 133 75 11 chrX 21685109 21685430 -140914500 - AluJb SINE Alu 0 312 6 2540 178 90 135 chrX 21685430 21685464 -140914466 - L1MC5 LINE L1 -394 7567 7533 1943 148 10 0 chrX 21685464 21685755 -140914175 + AluJb SINE Alu 1 294 -18 2540 178 90 135 chrX 21685755 21686422 -140913508 - L1MC5 LINE L1 -428 7533 6930 435 179 0 62 chrX 21686422 21686534 -140913396 - L1MB8 LINE L1 -15 6163 6059 2540 178 90 135 chrX 21686534 21686809 -140913121 - L1MC5 LINE L1 -1031 6930 6644 891 126 0 15 chrX 21688499 21688634 -140911296 - FLAM_C SINE Alu 0 133 1 2137 65 4 8 chrX 21688723 21688984 -140910946 + AluSq SINE Alu 1 260 -53 27 103 0 0 chrX 21690222 21690319 -140909611 + GC_rich Low_complexity Low_complexity 1 97 0 223 154 15 46 chrX 21690323 21690388 -140909542 + (CGG)n Simple_repeat Simple_repeat 1 63 0 205 148 37 19 chrX 21691287 21691341 -140908589 + (CGG)n Simple_repeat Simple_repeat 2 56 0 499 149 0 11 chrX 21692612 21692706 -140907224 - FLAM_A SINE Alu -2 140 48 2312 95 10 0 chrX 21693092 21693386 -140906544 - AluSx SINE Alu -15 297 1 25 65 0 0 chrX 21695096 21695142 -140904788 + AT_rich Low_complexity Low_complexity 1 46 0 277 273 71 55 chrX 21695241 21695424 -140904506 - L1ME2 LINE L1 -134 6030 5845 1945 177 49 97 chrX 21695437 21695749 -140904181 + Charlie1b DNA MER1_type 1 277 -2484 2390 80 34 11 chrX 21695749 21696098 -140903832 + L1PA14 LINE L1 5803 6159 -2 1945 177 49 97 chrX 21696098 21696334 -140903596 + Charlie1b DNA MER1_type 277 523 0 738 260 118 52 chrX 21696352 21696843 -140903087 - L1ME2 LINE L1 -362 5802 5218 2007 120 0 7 chrX 21696843 21697150 -140902780 - AluSx SINE Alu 0 305 1 738 260 118 52 chrX 21697150 21697470 -140902460 - L1ME2 LINE L1 -946 5218 4920 340 300 139 21 chrX 21697526 21697614 -140902316 - L1ME2 LINE L1 -1308 4838 4762 2558 55 0 0 chrX 21697614 21697907 -140902023 - AluY SINE Alu -18 293 1 340 300 139 21 chrX 21697907 21698055 -140901875 - L1ME2 LINE L1 -1384 4762 4574 330 294 94 12 chrX 21698122 21698292 -140901638 - L1ME2 LINE L1 -1683 4463 4280 946 217 30 15 chrX 21698297 21698495 -140901435 + HsTC2 DNA Tc2 2 202 -1696 236 213 21 0 chrX 21698496 21698543 -140901387 + HsTC2 DNA Tc2 491 538 -1360 * 1420 183 106 35 chrX 21698534 21698745 -140901185 + HsTC2 DNA Tc2 1287 1481 -417 1970 101 4 4 chrX 21698745 21699012 -140900918 - AluSx SINE Alu -45 267 1 1420 183 106 35 chrX 21699012 21699205 -140900725 + HsTC2 DNA Tc2 1481 1896 -2 436 85 0 0 chrX 21699226 21699285 -140900645 + Alu SINE Alu 2 60 -258 223 48 24 24 chrX 21699293 21699335 -140900595 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 521 286 43 47 chrX 21699363 21699586 -140900344 - L1ME2 LINE L1 -1924 4222 3999 1534 99 0 52 chrX 21699586 21699818 -140900112 - AluSg/x SINE Alu -8 302 83 521 286 43 47 chrX 21699818 21699916 -140900014 - L1ME2 LINE L1 -2147 3999 3902 1582 157 51 14 chrX 21699942 21700236 -140899694 - AluJo SINE Alu 0 312 8 236 284 59 0 chrX 21700297 21700399 -140899531 - L1ME2 LINE L1 -2438 3708 3601 2154 92 7 30 chrX 21700429 21700732 -140899198 - AluSq SINE Alu -14 299 4 27 62 0 0 chrX 21701162 21701210 -140898720 + AT_rich Low_complexity Low_complexity 1 48 0 2361 97 0 0 chrX 21701252 21701552 -140898378 - AluSx SINE Alu -12 300 1 1698 109 27 0 chrX 21701559 21701815 -140898115 - L1MA5 LINE L1 -30 6270 6008 1545 208 78 69 chrX 21702006 21702560 -140897370 + L1M4 LINE L1 4312 4870 -1276 2040 133 6 25 chrX 21702636 21702953 -140896977 - AluSx SINE Alu -1 311 1 1333 100 0 17 chrX 21703016 21703196 -140896734 + AluSp SINE Alu 121 297 -16 268 328 115 8 chrX 21703324 21703559 -140896371 - L1M4 LINE L1 -1880 4266 4007 1744 156 63 3 chrX 21703638 21703971 -140895959 - L1MB7 LINE L1 0 6184 5832 180 0 0 0 chrX 21704174 21704194 -140895736 + (TG)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chrX 21704212 21704234 -140895696 + (T)n Simple_repeat Simple_repeat 1 22 0 2541 83 0 0 chrX 21704319 21704631 -140895299 - AluSx SINE Alu 0 312 1 757 183 7 14 chrX 21704631 21704773 -140895157 - AluJo SINE Alu -169 143 3 231 36 0 0 chrX 21704785 21704813 -140895117 + (A)n Simple_repeat Simple_repeat 1 28 0 210 162 0 0 chrX 21704910 21704947 -140894983 + T-rich Low_complexity Low_complexity 1 37 0 2194 98 0 26 chrX 21705603 21705910 -140894020 + AluSq SINE Alu 1 299 -14 2264 103 3 3 chrX 21706071 21706372 -140893558 - AluSc SINE Alu -8 301 1 532 277 108 40 chrX 21708350 21708849 -140891081 + HAL1 LINE L1 816 1348 -1159 26 0 0 0 chrX 21709485 21709511 -140890419 + AT_rich Low_complexity Low_complexity 1 26 0 258 105 0 0 chrX 21709606 21709644 -140890286 + (T)n Simple_repeat Simple_repeat 1 38 0 208 384 23 0 chrX 21710293 21710379 -140889551 - L2 LINE L2 -545 2769 2682 2327 100 0 3 chrX 21711110 21711410 -140888520 - AluSx SINE Alu -13 299 1 2170 118 0 9 chrX 21711550 21711865 -140888065 - AluSx SINE Alu 0 312 1 254 332 121 11 chrX 21712355 21712545 -140887385 - L2 LINE L2 -432 2882 2672 390 42 0 0 chrX 21712848 21712896 -140887034 + (GA)n Simple_repeat Simple_repeat 2 49 0 372 242 58 76 chrX 21713261 21713444 -140886486 + L1ME3 LINE L1 5977 6164 0 1643 148 16 49 chrX 21714545 21714849 -140885081 - AluJb SINE Alu -18 294 1 2206 125 0 6 chrX 21714882 21715194 -140884736 + AluSx SINE Alu 1 310 -2 2441 68 3 7 chrX 21715350 21715646 -140884284 - AluSc SINE Alu -14 295 1 1709 172 44 0 chrX 21715657 21715954 -140883976 - AluJo SINE Alu -2 310 1 235 243 83 35 chrX 21716223 21716337 -140883593 + MIR SINE MIR 50 167 -71 628 216 27 40 chrX 21716345 21716493 -140883437 - MIR SINE MIR -46 216 71 2242 109 0 3 chrX 21716528 21716832 -140883098 - AluSx SINE Alu -9 303 1 2444 77 3 0 chrX 21716994 21717292 -140882638 - AluSp SINE Alu -14 299 1 2304 96 10 3 chrX 21717384 21717686 -140882244 - AluSx SINE Alu -8 304 1 2191 111 0 7 chrX 21717878 21718185 -140881745 - AluY SINE Alu -6 305 1 22 0 0 0 chrX 21718188 21718210 -140881720 + AT_rich Low_complexity Low_complexity 1 22 0 243 226 0 19 chrX 21718277 21718330 -140881600 + MIR SINE MIR 71 122 -140 2434 59 3 23 chrX 21718879 21719183 -140880747 - AluY SINE Alu -13 298 1 2407 83 0 3 chrX 21719230 21719542 -140880388 - AluY SINE Alu 0 311 1 1729 161 20 7 chrX 21719542 21719834 -140880096 - AluSx SINE Alu -16 296 1 2349 81 0 13 chrX 21720899 21721197 -140878733 + AluSx SINE Alu 1 294 -18 1961 143 0 3 chrX 21721337 21721630 -140878300 - AluSx SINE Alu -14 298 7 274 287 29 73 chrX 21722191 21722327 -140877603 - L2 LINE L2 -5 3267 3138 484 278 70 48 chrX 21722540 21722810 -140877120 - L1ME LINE L1 -436 5685 5410 247 322 151 47 chrX 21722852 21724134 -140875796 - L2 LINE L2 -673 2641 1226 2238 81 0 7 chrX 21724134 21724440 -140875490 - AluSx SINE Alu 0 304 1 2155 97 47 53 chrX 21724460 21724684 -140875246 + MER46B DNA MER2_type 1 99 -2632 2061 82 6 91 chrX 21724684 21725014 -140874916 - AluSx SINE Alu -10 302 1 2155 97 47 53 chrX 21725014 21725150 -140874780 + MER46B DNA MER2_type 99 234 -2 22 35 0 0 chrX 21725548 21725577 -140874353 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chrX 21725668 21725727 -140874203 + AT_rich Low_complexity Low_complexity 1 59 0 1429 187 3 50 chrX 21725919 21726218 -140873712 - AluJb SINE Alu -27 285 1 2166 114 3 0 chrX 21726413 21726703 -140873227 - AluSx SINE Alu -21 291 1 886 195 0 30 chrX 21726738 21726902 -140873028 + FRAM SINE Alu 1 159 -7 1595 155 22 57 chrX 21727285 21727602 -140872328 + AluJo SINE Alu 1 306 -6 259 298 69 30 chrX 21727757 21727888 -140872042 + L2 LINE L2 3178 3313 0 313 91 0 318 chrX 21728048 21728158 -140871772 - FAM SINE Alu -51 124 77 198 353 35 12 chrX 21728159 21728244 -140871686 - MIR SINE MIR -158 104 18 396 333 109 0 chrX 21728645 21728801 -140871129 - L2 LINE L2 -1 3271 3099 2227 87 7 27 chrX 21728845 21729145 -140870785 + AluSg SINE Alu 1 294 -16 377 213 150 8 chrX 21729228 21729355 -140870575 - L1MC5 LINE L1 -134 7827 7683 415 314 110 71 chrX 21729492 21729797 -140870133 - L2 LINE L2 -422 2892 2562 2383 82 0 0 chrX 21729797 21730090 -140869840 - AluY SINE Alu -18 293 1 415 314 110 71 chrX 21730090 21730237 -140869693 - L2 LINE L2 -752 2562 2422 28 29 0 0 chrX 21731006 21731041 -140868889 + AT_rich Low_complexity Low_complexity 1 35 0 1333 109 35 0 chrX 21731041 21731243 -140868687 - L1MA8 LINE L1 -3 6288 6080 589 269 35 7 chrX 21731735 21731880 -140868050 + MIR SINE MIR 36 184 -78 349 315 34 14 chrX 21732463 21732609 -140867321 + MIR SINE MIR 95 243 -19 2221 114 0 3 chrX 21732655 21732953 -140866977 - AluSx SINE Alu -15 297 1 1601 157 63 18 chrX 21733578 21733864 -140866066 + AluJb SINE Alu 1 299 -13 2697 156 65 2 chrX 21734060 21734540 -140865390 + L1MB7 LINE L1 5658 6167 -17 2460 119 37 15 chrX 21734751 21735161 -140864769 - L1MB3 LINE L1 -1 6182 5764 272 250 10 77 chrX 21735225 21735251 -140864679 - HAL1 LINE L1 -100 2407 2381 2953 142 147 26 chrX 21735251 21735700 -140864230 + MER6A DNA MER2_type 2 528 -337 2185 116 0 3 chrX 21735700 21736001 -140863929 - AluSx SINE Alu -12 300 1 2953 142 147 26 chrX 21736001 21736088 -140863842 + MER6A DNA MER2_type 528 603 -2 272 250 10 77 chrX 21736088 21736157 -140863773 - HAL1 LINE L1 -126 2381 2309 1718 107 48 55 chrX 21736157 21736309 -140863621 - AluSg SINE Alu -21 289 138 2507 50 0 10 chrX 21736309 21736607 -140863323 - AluY SINE Alu -15 296 2 1718 107 48 55 chrX 21736607 21736745 -140863185 - AluSg SINE Alu -172 138 1 272 250 10 77 chrX 21736745 21736844 -140863086 - HAL1 LINE L1 -198 2309 2225 231 227 98 104 chrX 21736935 21737073 -140862857 - HAL1b LINE L1 -437 911 773 2276 96 7 0 chrX 21737073 21737366 -140862564 - AluSp SINE Alu -18 295 1 231 227 98 104 chrX 21737366 21737390 -140862540 - HAL1b LINE L1 -575 773 750 401 221 79 0 chrX 21737410 21737537 -140862393 - HAL1 LINE L1 -343 2164 2028 1883 144 17 17 chrX 21737550 21737848 -140862082 - AluJo SINE Alu -14 298 1 673 158 238 12 chrX 21737920 21738084 -140861846 - MER3 DNA MER1_type -8 201 1 720 192 56 0 chrX 21738142 21738267 -140861663 + FLAM_C SINE Alu 2 133 -10 348 250 186 42 chrX 21738442 21738706 -140861224 + HAL1b LINE L1 49 350 -998 1132 248 29 32 chrX 21738713 21739024 -140860906 + HAL1b LINE L1 418 727 -621 313 228 159 53 chrX 21739038 21739152 -140860778 + HAL1b LINE L1 832 933 -415 1655 160 78 0 chrX 21739152 21739434 -140860496 - AluJo SINE Alu -8 304 1 313 228 159 53 chrX 21739434 21739508 -140860422 + HAL1b LINE L1 933 1040 -308 642 280 146 19 chrX 21739508 21739776 -140860154 - L2 LINE L2 -1 3312 3011 2158 222 238 42 chrX 21739779 21740214 -140859716 - L2 LINE L2 -978 2336 1988 1812 169 7 3 chrX 21740214 21740509 -140859421 - AluJo SINE Alu -16 296 1 2158 222 238 42 chrX 21740509 21740589 -140859341 - L2 LINE L2 -1326 1988 1925 2413 88 3 0 chrX 21740589 21740886 -140859044 + AluSq SINE Alu 1 298 -15 2158 222 238 42 chrX 21740886 21741473 -140858457 - L2 LINE L2 -1389 1925 1016 275 352 23 16 chrX 21741682 21741810 -140858120 + MIR SINE MIR 19 147 -115 283 366 159 8 chrX 21744031 21744282 -140855648 + L2 LINE L2 2363 2651 -663 195 317 96 19 chrX 21744433 21744537 -140855393 - MER5B DNA MER1_type -65 113 2 21 0 0 0 chrX 21745120 21745141 -140854789 + AT_rich Low_complexity Low_complexity 1 21 0 467 274 0 18 chrX 21745695 21745808 -140854122 + MIR SINE MIR 79 189 -73 2081 121 40 0 chrX 21746526 21746824 -140853106 + AluSx SINE Alu 1 310 -2 1517 151 107 4 chrX 21747319 21747454 -140852476 - AluJb SINE Alu -12 300 180 450 0 0 0 chrX 21747454 21747504 -140852426 + (TG)n Simple_repeat Simple_repeat 2 51 0 1517 151 107 4 chrX 21747504 21747640 -140852290 - AluJb SINE Alu -132 180 1 2318 62 10 14 chrX 21747907 21748199 -140851731 + AluY SINE Alu 2 292 -19 291 167 19 0 chrX 21749002 21749056 -140850874 - L2 LINE L2 -4 3309 3255 1817 158 0 24 chrX 21750536 21750834 -140849096 - AluSx SINE Alu -21 291 1 25 0 0 0 chrX 21752607 21752632 -140847298 + AT_rich Low_complexity Low_complexity 1 25 0 2136 98 3 41 chrX 21753838 21754156 -140845774 - AluSg1 SINE Alu -1 308 3 198 0 0 0 chrX 21754631 21754653 -140845277 + (T)n Simple_repeat Simple_repeat 1 22 0 980 166 37 32 chrX 21756309 21756496 -140843434 + MER5A DNA MER1_type 1 188 -1 189 0 0 0 chrX 21756798 21756819 -140843111 + (TG)n Simple_repeat Simple_repeat 2 22 0 318 269 107 31 chrX 21758428 21758652 -140841278 - L1ME LINE L1 -626 5609 5368 309 314 53 26 chrX 21758691 21758917 -140841013 - L1ME LINE L1 -924 5291 5060 1017 180 0 0 chrX 21758959 21759120 -140840810 + FRAM SINE Alu 1 153 -23 335 271 159 35 chrX 21759141 21759480 -140840450 - L1ME LINE L1 -1180 5035 4655 2234 98 3 0 chrX 21759483 21759780 -140840150 - AluSx SINE Alu -14 298 1 1700 87 61 32 chrX 21759963 21760240 -140839690 + AluSq SINE Alu 1 285 -28 416 236 11 0 chrX 21760425 21760514 -140839416 - MER5A DNA MER1_type -83 106 17 437 204 299 7 chrX 21760537 21760674 -140839256 + MER5B DNA MER1_type 1 177 -1 457 296 134 37 chrX 21760676 21760803 -140839127 - L1ME LINE L1 -2757 3458 3345 2343 96 0 0 chrX 21760803 21761104 -140838826 - AluSx SINE Alu -11 301 1 457 296 134 37 chrX 21761104 21761222 -140838708 - L1ME LINE L1 -2870 3345 3240 2161 134 0 6 chrX 21761222 21761536 -140838394 - AluJo SINE Alu 0 312 1 457 296 134 37 chrX 21761536 21761877 -140838053 - L1ME LINE L1 -2975 3240 2814 874 159 0 0 chrX 21762035 21762167 -140837763 - FLAM_C SINE Alu 0 133 2 470 315 102 35 chrX 21762575 21763026 -140836904 - HAL1 LINE L1 -827 1680 1200 195 129 0 0 chrX 21763169 21763200 -140836730 + (A)n Simple_repeat Simple_repeat 1 31 0 2820 118 11 122 chrX 21763530 21764063 -140835867 + MER101 LTR ERV1 1 474 0 499 287 32 103 chrX 21764082 21764403 -140835527 - L1ME LINE L1 -597 5573 5231 407 35 18 0 chrX 21764403 21764460 -140835470 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 636 121 222 0 chrX 21764460 21764559 -140835371 - FLAM_C SINE Alu -12 121 1 499 287 32 103 chrX 21764559 21764625 -140835305 - L1ME LINE L1 -938 5232 5163 1739 135 14 44 chrX 21764625 21764921 -140835009 - AluJb SINE Alu -25 287 1 499 287 32 103 chrX 21764921 21765376 -140834554 - L1ME LINE L1 -1007 5163 4780 2082 125 0 0 chrX 21765413 21765693 -140834237 - AluSx SINE Alu -32 280 1 3765 151 16 31 chrX 21765703 21765864 -140834066 - L1MB7 LINE L1 0 6184 6022 2216 115 3 3 chrX 21765864 21766176 -140833754 + AluSq SINE Alu 2 313 0 3765 151 16 31 chrX 21766176 21766685 -140833245 - L1MB7 LINE L1 -162 6022 5524 725 121 0 69 chrX 21766686 21766802 -140833128 + AluJb SINE Alu 190 297 -15 339 242 23 53 chrX 21766807 21766939 -140832991 - L1ME LINE L1 -4995 1210 1083 2019 201 60 9 chrX 21766996 21767448 -140832482 - L1ME1 LINE L1 -278 5888 5414 1547 239 43 10 chrX 21767504 21767897 -140832033 - L1ME1 LINE L1 -23 6143 5738 * 7637 83 7 29 chrX 21767885 21768223 -140831707 + L1MA1 LINE L1 5138 5482 -820 2468 70 3 0 chrX 21768223 21768524 -140831406 + AluSp SINE Alu 1 302 -11 7637 83 7 29 chrX 21768524 21769375 -140830555 + L1MA1 LINE L1 5482 6302 0 1573 209 163 3 chrX 21769411 21769673 -140830257 - L1ME1 LINE L1 -420 5746 5527 2002 121 16 22 chrX 21769673 21769987 -140829943 - AluJb SINE Alu 0 312 1 1573 209 163 3 chrX 21769987 21770200 -140829730 - L1ME1 LINE L1 -639 5527 5203 3657 223 66 38 chrX 21770219 21770472 -140829458 - L1ME LINE L1 -5302 1094 850 1892 149 10 23 chrX 21770472 21770774 -140829156 - AluJb SINE Alu -14 298 1 3657 223 66 38 chrX 21770774 21771575 -140828355 - L1ME LINE L1 -5546 850 10 2011 96 6 81 chrX 21771624 21771946 -140827984 - AluSx SINE Alu -14 298 1 243 0 0 0 chrX 21772274 21772301 -140827629 + (TG)n Simple_repeat Simple_repeat 2 28 0 704 269 14 0 chrX 21772511 21772734 -140827196 - HAL1b LINE L1 -520 828 603 483 271 157 8 chrX 21772728 21772983 -140826947 - HAL1 LINE L1 -604 1903 1611 * 364 289 96 60 chrX 21773077 21773389 -140826541 - HAL1 LINE L1 -1043 1464 1126 2160 119 3 3 chrX 21773389 21773683 -140826247 - AluSp SINE Alu -19 294 1 364 289 96 60 chrX 21773683 21773882 -140826048 - HAL1 LINE L1 -1381 1126 935 1571 123 123 15 chrX 21774247 21774508 -140825422 - AluJb SINE Alu -23 289 1 2276 112 3 0 chrX 21775095 21775389 -140824541 - AluSg SINE Alu -15 295 1 2139 120 94 26 chrX 21775603 21775944 -140823986 + THE1B LTR MaLR 1 364 0 633 235 59 12 chrX 21776100 21776270 -140823660 + MER5B DNA MER1_type 1 178 0 1780 166 3 0 chrX 21776821 21777105 -140822825 + AluJb SINE Alu 11 295 -17 2473 46 0 0 chrX 21777110 21777424 -140822506 + AluY SINE Alu 1 314 0 2108 109 6 26 chrX 21777430 21777742 -140822188 + AluSx SINE Alu 1 306 -6 2594 44 0 0 chrX 21777765 21778063 -140821867 - AluY SINE Alu -9 302 5 2073 125 0 26 chrX 21778343 21778655 -140821275 - AluJb SINE Alu -8 304 1 770 133 9 18 chrX 21779370 21779483 -140820447 - FLAM_C SINE Alu -15 128 17 307 304 61 75 chrX 21779579 21779793 -140820137 - HAL1 LINE L1 -1580 927 717 207 162 0 0 chrX 21779904 21779941 -140819989 + GA-rich Low_complexity Low_complexity 6 42 0 24 32 0 0 chrX 21780129 21780160 -140819770 + AT_rich Low_complexity Low_complexity 1 31 0 380 250 62 56 chrX 21780344 21780471 -140819459 + MER112 DNA MER1_type 8 133 -127 2108 107 7 29 chrX 21780471 21780780 -140819150 - AluSx SINE Alu -10 302 1 1788 142 17 37 chrX 21780783 21781079 -140818851 - AluJb SINE Alu -22 290 1 380 250 62 56 chrX 21781079 21781107 -140818823 + MER112 DNA MER1_type 134 168 -92 1690 155 31 36 chrX 21781124 21781639 -140818291 + L1MB4 LINE L1 5093 5609 -571 2265 87 7 3 chrX 21781639 21781925 -140818005 + AluSx SINE Alu 13 299 -13 1690 155 31 36 chrX 21781925 21782244 -140817686 + L1MB4 LINE L1 5609 6079 -101 2242 93 31 0 chrX 21782244 21782535 -140817395 - AluSx SINE Alu -9 303 4 1690 155 31 36 chrX 21782535 21782627 -140817303 + L1MB4 LINE L1 6079 6170 -10 921 118 17 17 chrX 21883411 21884372 -140715558 - HSATII Satellite Satellite -4 960 1 965 117 13 15 chrX 21884392 21885989 -140713941 - HSATII Satellite Satellite -8 1594 1 869 74 17 51 chrX 21886015 21886190 -140713740 - HSATII Satellite Satellite -1 169 1 959 108 14 8 chrX 21886216 21887290 -140712640 - HSATII Satellite Satellite 0 1079 1 916 138 11 13 chrX 21887320 21887771 -140712159 - HSATII Satellite Satellite -1 450 1 965 96 8 17 chrX 21887786 21888482 -140711448 - HSATII Satellite Satellite 0 689 1 784 125 18 18 chrX 21888509 21888677 -140711253 - HSATII Satellite Satellite -2 168 1 959 108 13 11 chrX 21888708 21889533 -140710397 - HSATII Satellite Satellite 0 826 1 965 115 13 14 chrX 21889564 21891457 -140708473 - HSATII Satellite Satellite -4 1891 1 1007 111 13 16 chrX 21891469 21892777 -140707153 - HSATII Satellite Satellite -8 1303 1 998 110 10 15 chrX 21892792 21894553 -140705377 - HSATII Satellite Satellite -8 1752 1 938 109 7 17 chrX 21894575 21895299 -140704631 - HSATII Satellite Satellite -50 717 1 944 101 14 11 chrX 21895318 21895854 -140704076 - HSATII Satellite Satellite 0 537 1 998 120 2 15 chrX 21895884 21896485 -140703445 - HSATII Satellite Satellite -9 593 1 965 123 14 0 chrX 21896508 21896804 -140703126 - HSATII Satellite Satellite -1 300 1 953 108 15 17 chrX 21896820 21898069 -140701861 - HSATII Satellite Satellite 0 1246 1 965 112 12 13 chrX 21898099 21899845 -140700085 - HSATII Satellite Satellite 0 1744 1 986 111 12 13 chrX 21899875 21901621 -140698309 - HSATII Satellite Satellite 0 1744 1 965 115 12 14 chrX 21901651 21904705 -140695225 - HSATII Satellite Satellite 0 3049 1 944 118 12 18 chrX 21904735 21906195 -140693735 - HSATII Satellite Satellite -4 1451 1 953 117 11 13 chrX 21906215 21906903 -140693027 - HSATII Satellite Satellite -3 686 1 944 111 13 15 chrX 21907024 21908355 -140691575 - HSATII Satellite Satellite 0 1327 1 986 116 12 19 chrX 21908385 21908986 -140690944 - HSATII Satellite Satellite -9 597 1 998 108 15 6 chrX 21909009 21910570 -140689360 - HSATII Satellite Satellite 0 1575 1 986 118 11 23 chrX 21910600 21911220 -140688710 - HSATII Satellite Satellite -9 612 1 947 108 16 5 chrX 21911231 21912346 -140687584 - HSATII Satellite Satellite 0 1126 1 965 115 11 17 chrX 21912376 21914304 -140685626 - HSATII Satellite Satellite -4 1917 1 986 113 14 13 chrX 21914324 21914778 -140685152 - HSATII Satellite Satellite -9 454 1 956 114 12 15 chrX 21914789 21915751 -140684179 - HSATII Satellite Satellite -2 958 1 980 115 7 14 chrX 21915778 21917301 -140682629 - HSATII Satellite Satellite 0 1511 1 920 99 7 0 chrX 21917327 21917478 -140682452 - HSATII Satellite Satellite 0 170 19 747 110 25 24 chrX 21917494 21917740 -140682190 - HSATII Satellite Satellite -9 246 1 947 111 12 10 chrX 21917766 21918988 -140680942 - HSATII Satellite Satellite -50 1224 1 998 106 13 9 chrX 21919000 21920740 -140679190 - HSATII Satellite Satellite 0 1748 1 974 121 11 19 chrX 21920770 21921371 -140678559 - HSATII Satellite Satellite -9 596 1 998 112 12 13 chrX 21921394 21925424 -140674506 - HSATII Satellite Satellite -9 4026 1 965 112 12 16 chrX 21925435 21927284 -140672646 - HSATII Satellite Satellite 0 1842 1 784 125 18 18 chrX 21927311 21927479 -140672451 - HSATII Satellite Satellite -2 168 1 1007 112 11 15 chrX 21927510 21933918 -140666012 - HSATII Satellite Satellite 0 6384 1 784 125 18 18 chrX 21933945 21934113 -140665817 - HSATII Satellite Satellite -2 168 1 986 110 10 13 chrX 21934144 21937695 -140662235 - HSATII Satellite Satellite 0 3538 1 998 112 8 14 chrX 21937710 21942360 -140657570 - HSATII Satellite Satellite -19 4624 1 339 191 52 27 chrX 21942537 21942832 -140657098 + (CTTAG)n Simple_repeat Simple_repeat 1 302 0 316 188 28 39 chrX 21942900 21943081 -140656849 + (CTTAG)n Simple_repeat Simple_repeat 2 180 0 386 161 37 0 chrX 22043100 22043181 -140556749 - L1M4 LINE L1 -506 5678 5595 2078 107 0 22 chrX 22043290 22043609 -140556321 + AluSx SINE Alu 1 312 0 1046 150 0 0 chrX 22043624 22043791 -140556139 + AluSg/x SINE Alu 121 287 -25 605 312 59 64 chrX 22043791 22044195 -140555735 - L2 LINE L2 -557 2757 2356 576 246 10 116 chrX 22044603 22044642 -140555288 + MER5B DNA MER1_type 1 43 -135 1884 138 0 0 chrX 22044642 22044917 -140555013 - AluSx SINE Alu -36 276 2 576 246 10 116 chrX 22044917 22045076 -140554854 + MER5B DNA MER1_type 43 178 0 241 318 0 0 chrX 22046113 22046179 -140553751 + CT-rich Low_complexity Low_complexity 4 69 0 187 297 208 0 chrX 22046930 22047031 -140552899 - L2 LINE L2 -3 3269 3148 738 238 60 24 chrX 22047045 22047293 -140552637 + MLT1C LTR MaLR 9 265 -202 490 146 214 58 chrX 22047427 22047530 -140552400 + MLT1C LTR MaLR 331 453 -52 2188 79 4 0 chrX 22047562 22047842 -140552088 - AluSx SINE Alu -30 282 2 424 76 30 15 chrX 22047844 22047910 -140552020 + MLT1C LTR MaLR 439 505 0 1855 149 10 0 chrX 22048264 22048552 -140551378 - AluJb SINE Alu -21 291 1 1596 186 34 56 chrX 22048561 22048766 -140551164 - L1MA10 LINE L1 -5 6329 6136 2069 113 0 0 chrX 22048766 22049049 -140550881 - AluSx SINE Alu -29 283 1 1596 186 34 56 chrX 22049049 22049251 -140550679 - L1MA10 LINE L1 -198 6136 5931 477 127 13 0 chrX 22049467 22049546 -140550384 - MADE1 DNA Mariner 0 80 1 432 272 43 37 chrX 22049804 22049966 -140549964 - MIR SINE MIR -40 222 60 3675 146 51 8 chrX 22049989 22050389 -140549541 - L1MB7 LINE L1 -25 6159 5721 1949 105 3 43 chrX 22050389 22050714 -140549216 - AluSx SINE Alu 0 312 1 3675 146 51 8 chrX 22050714 22050944 -140548986 - L1MB7 LINE L1 -463 5721 5502 308 330 52 9 chrX 22050991 22051106 -140548824 - L2 LINE L2 -15 3257 3138 1443 133 47 0 chrX 22051153 22051387 -140548543 + MER45B DNA AcHobo 796 1040 0 1725 181 15 12 chrX 22051902 22052227 -140547703 - L1PB4 LINE L1 -14 6142 5817 2357 73 106 3 chrX 22052360 22052690 -140547240 - THE1B LTR MaLR 0 364 1 2095 105 7 13 chrX 22053522 22053826 -140546104 - AluSq SINE Alu -11 302 1 1646 211 91 8 chrX 22053828 22054189 -140545741 - MSTD LTR MaLR -5 391 1 1638 179 53 0 chrX 22054189 22054491 -140545439 - L1MB2 LINE L1 -40 6131 5814 394 230 11 43 chrX 22055437 22055569 -140544361 + MER90 LTR ERV1 52 202 -412 733 289 33 30 chrX 22055603 22055907 -140544023 + MER90 LTR ERV1 291 595 -19 1775 121 42 3 chrX 22055970 22056259 -140543671 + AluSx SINE Alu 1 300 -12 1984 138 0 0 chrX 22056823 22057119 -140542811 - AluSx SINE Alu -16 296 1 633 136 57 102 chrX 22057207 22057384 -140542546 - MER96B DNA MER1_type? 0 417 249 297 122 61 0 chrX 22057395 22057444 -140542486 - MER96B DNA MER1_type? -365 52 1 1846 183 45 38 chrX 22057461 22057816 -140542114 + MER57A LTR ERV1 1 361 -42 1899 105 7 17 chrX 22057816 22058112 -140541818 - AluSg SINE Alu -17 293 1 1846 183 45 38 chrX 22058112 22058156 -140541774 + MER57A LTR ERV1 361 403 0 2143 88 17 0 chrX 22058765 22059059 -140540871 + AluSq SINE Alu 1 299 -14 210 189 0 0 chrX 22059469 22059506 -140540424 - MER5B DNA MER1_type -141 37 1 767 170 154 6 chrX 22059510 22059692 -140540238 + MER3 DNA MER1_type 1 209 0 319 287 171 16 chrX 22059701 22059830 -140540100 - MER5A DNA MER1_type -1 188 40 182 125 125 0 chrX 22059834 22059874 -140540056 + MER5A DNA MER1_type 31 75 -114 * 479 150 79 32 chrX 22059866 22059969 -140539961 - MER5A DNA MER1_type -77 112 4 2225 141 17 11 chrX 22060154 22060516 -140539414 - THE1B LTR MaLR 0 364 1 224 336 62 0 chrX 22061387 22061515 -140538415 + L2 LINE L2 2032 2167 -1147 1745 153 11 24 chrX 22061743 22062076 -140537854 + AluJb SINE Alu 1 329 0 1608 109 0 0 chrX 22062120 22062331 -140537599 + AluSg/x SINE Alu 83 293 -17 317 352 37 62 chrX 22062919 22063182 -140536748 - HAL1b LINE L1 -694 654 386 2340 102 0 0 chrX 22063182 22063476 -140536454 - AluSx SINE Alu -18 294 1 317 352 37 62 chrX 22063476 22063516 -140536414 - HAL1b LINE L1 -962 386 359 1762 182 0 3 chrX 22063516 22063818 -140536112 - AluJo SINE Alu -11 301 1 317 352 37 62 chrX 22063818 22063865 -140536065 - HAL1b LINE L1 -989 359 312 417 288 113 44 chrX 22063875 22064194 -140535736 - MLT1I LTR MaLR 0 409 69 1208 229 0 8 chrX 22064372 22064608 -140535322 + MER8 DNA MER2_type 3 236 -3 688 175 0 0 chrX 22064885 22064999 -140534931 - MER81 DNA DNA 0 114 1 1888 164 0 26 chrX 22065120 22065430 -140534500 - AluJb SINE Alu -10 302 1 613 211 163 24 chrX 22065841 22066007 -140533923 + LTR40a LTR ERVL 1 189 -330 957 148 12 30 chrX 22066015 22066184 -140533746 + FRAM SINE Alu 6 171 -5 2021 108 10 41 chrX 22066275 22066589 -140533341 - AluSx SINE Alu -8 304 1 1464 210 7 7 chrX 22066598 22066870 -140533060 + LTR40a LTR ERVL 248 519 0 3430 76 18 5 chrX 22067118 22067565 -140532365 + MLT2A2 LTR ERVL 1 453 0 694 232 61 6 chrX 22067682 22067863 -140532067 + MIR SINE MIR 12 202 -60 2055 178 45 53 chrX 22068044 22068128 -140531802 + Charlie4a DNA MER1_type 6 89 -1872 2293 80 3 38 chrX 22068128 22068441 -140531489 - AluSp SINE Alu -11 302 1 2055 178 45 53 chrX 22068441 22068793 -140531137 + Charlie4a DNA MER1_type 89 440 -1521 1708 143 29 48 chrX 22068793 22069108 -140530822 + AluJb SINE Alu 1 309 -3 2055 178 45 53 chrX 22069108 22069176 -140530754 + Charlie4a DNA MER1_type 440 507 -1 331 289 165 10 chrX 22069568 22069762 -140530168 + MIR SINE MIR 14 237 -25 492 202 83 0 chrX 22069915 22070024 -140529906 + MER110 LTR ERV1 369 486 -5 389 89 0 218 chrX 22070375 22070431 -140529499 - MADE1 DNA Mariner 0 80 14 2190 105 0 11 chrX 22070431 22070716 -140529214 + AluSq SINE Alu 1 282 -31 200 57 0 29 chrX 22070721 22070756 -140529174 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 389 89 0 218 chrX 22070756 22070794 -140529136 - MADE1 DNA Mariner -70 10 2 2261 182 57 16 chrX 22071637 22072125 -140527805 + L1MB5 LINE L1 5667 6174 0 1575 32 1 20 chrX 22072388 22072591 -140527339 + L1HS LINE L1 5957 6155 0 459 95 0 0 chrX 22072593 22072667 -140527263 + (A)n Simple_repeat Simple_repeat 1 74 0 1517 213 35 3 chrX 22073008 22073355 -140526575 + L1MB2 LINE L1 5812 6169 -2 21 71 0 0 chrX 22073376 22073418 -140526512 + AT_rich Low_complexity Low_complexity 1 42 0 417 131 0 0 chrX 22074650 22074734 -140525196 + (CAG)n Simple_repeat Simple_repeat 1 84 0 423 126 58 0 chrX 22075339 22075426 -140524504 - MER5A DNA MER1_type -95 94 3 536 170 0 30 chrX 22075628 22075728 -140524202 - FAM SINE Alu 0 185 89 2784 241 136 67 chrX 22076179 22076551 -140523379 + L2 LINE L2 1331 1676 -1638 1534 186 3 35 chrX 22076551 22076868 -140523062 + AluJo SINE Alu 1 307 -5 2351 92 0 16 chrX 22076870 22077176 -140522754 + AluSg SINE Alu 3 303 -7 2784 241 136 67 chrX 22077176 22077411 -140522519 + L2 LINE L2 1676 1893 -1421 876 157 119 19 chrX 22077411 22077570 -140522360 - FAM SINE Alu 0 175 1 2784 241 136 67 chrX 22077570 22077587 -140522343 + L2 LINE L2 1893 1907 -1407 1865 138 10 44 chrX 22077587 22077738 -140522192 - AluJo SINE Alu -25 287 149 2322 101 0 0 chrX 22077738 22078034 -140521896 - AluSx SINE Alu -16 296 1 1865 138 10 44 chrX 22078034 22078179 -140521751 - AluJo SINE Alu -163 149 1 2784 241 136 67 chrX 22078179 22078988 -140520942 + L2 LINE L2 1907 2868 -446 2065 163 52 36 chrX 22078988 22079536 -140520394 - MLT2A2 LTR ERVL 0 554 3 326 316 7 71 chrX 22079542 22079697 -140520233 + L2 LINE L2 2895 3039 -274 951 127 0 8 chrX 22079840 22079974 -140519956 - FLAM_C SINE Alu -10 133 1 2006 135 143 11 chrX 22079974 22080352 -140519578 - MSTA LTR MaLR 0 428 1 273 253 0 0 chrX 22080840 22080935 -140518995 + (TA)n Simple_repeat Simple_repeat 2 96 0 2122 100 52 0 chrX 22081582 22081871 -140518059 + AluSx SINE Alu 2 305 -7 1286 153 10 14 chrX 22081880 22082089 -140517841 + AluJo SINE Alu 85 292 -20 21 36 0 0 chrX 22082093 22082121 -140517809 + AT_rich Low_complexity Low_complexity 1 28 0 202 324 0 0 chrX 22082283 22082354 -140517576 + (TTCA)n Simple_repeat Simple_repeat 1 71 0 230 253 0 33 chrX 22082463 22082554 -140517376 - L2 LINE L2 -114 3199 3112 988 156 0 27 chrX 22082577 22082763 -140517167 - AluSg/x SINE Alu -18 294 114 673 96 0 0 chrX 22084697 22084791 -140515139 + AluSp/q SINE Alu 202 295 -18 1019 104 0 8 chrX 22085710 22085844 -140514086 - AluJb SINE Alu -179 133 1 1132 224 92 16 chrX 22085922 22086225 -140513705 - MLT1C LTR MaLR -89 378 53 2436 94 30 24 chrX 22086226 22086481 -140513449 + THE1C LTR MaLR 1 260 -115 339 155 42 0 chrX 22086481 22086552 -140513378 - L1MB2 LINE L1 -14 6157 6084 2436 94 30 24 chrX 22086552 22086669 -140513261 + THE1C LTR MaLR 260 375 0 405 316 194 39 chrX 22086698 22087084 -140512846 - L3 LINE CR1 -729 848 403 4246 134 48 14 chrX 22087111 22087837 -140512093 + L1MB4 LINE L1 5429 6179 -1 1898 131 71 30 chrX 22088200 22088234 -140511696 - L1MB3 LINE L1 -7 6176 6145 1873 107 114 7 chrX 22088234 22088505 -140511425 + AluSg1 SINE Alu 1 300 -9 1898 131 71 30 chrX 22088505 22088675 -140511255 - L1MB3 LINE L1 -38 6145 5983 1506 186 46 7 chrX 22088675 22088960 -140510970 - AluJb SINE Alu -16 296 1 1898 131 71 30 chrX 22088960 22089120 -140510810 - L1MB3 LINE L1 -200 5983 5796 1770 125 73 100 chrX 22089491 22089550 -140510380 - L1MB7 LINE L1 -8 6176 6117 2912 10 0 0 chrX 22089550 22089861 -140510069 + AluY SINE Alu 1 311 0 1770 125 73 100 chrX 22089861 22090057 -140509873 - L1MB7 LINE L1 -67 6117 5935 2141 136 0 3 chrX 22090057 22090358 -140509572 + AluSx SINE Alu 1 300 -12 1770 125 73 100 chrX 22090358 22090542 -140509388 - L1MB7 LINE L1 -249 5935 5748 2199 181 36 18 chrX 22090542 22090985 -140508945 + MLT1C LTR MaLR 1 451 -16 2099 136 128 31 chrX 22090985 22091375 -140508555 + MSTA LTR MaLR 1 428 0 921 126 0 15 chrX 22091568 22091703 -140508227 + AluSq/x SINE Alu 1 133 -180 280 259 0 0 chrX 22091871 22091929 -140508001 - MIR SINE MIR -1 261 204 311 272 133 50 chrX 22091937 22092117 -140507813 + MLT1J LTR MaLR 2 196 -315 863 252 104 62 chrX 22092119 22092575 -140507355 + MLT1J1 LTR MaLR 1 438 -8 354 304 130 20 chrX 22092614 22092861 -140507069 + MLT1J LTR MaLR 236 509 -2 2595 98 29 3 chrX 22093024 22093371 -140506559 - THE1B LTR MaLR -8 356 1 1710 169 10 26 chrX 22093786 22094088 -140505842 - AluJb SINE Alu -11 301 5 1956 143 14 0 chrX 22094346 22094633 -140505297 + AluSx SINE Alu 1 291 -21 1203 230 36 27 chrX 22095037 22095372 -140504558 + L1MEc LINE L1 404 741 -5655 2450 79 0 7 chrX 22095374 22095678 -140504252 + AluSx SINE Alu 1 302 -10 469 199 177 43 chrX 22095779 22095995 -140503935 + L1MC4 LINE L1 7784 7995 0 2506 80 3 0 chrX 22096512 22096824 -140503106 - AluSq SINE Alu 0 313 1 213 39 0 0 chrX 22097296 22097322 -140502608 + (TG)n Simple_repeat Simple_repeat 2 27 0 234 62 0 0 chrX 22097325 22097357 -140502573 + (GA)n Simple_repeat Simple_repeat 1 32 0 922 171 17 33 chrX 22097720 22097901 -140502029 + MER5B DNA MER1_type 1 178 0 2225 118 0 0 chrX 22098108 22098404 -140501526 + AluSx SINE Alu 2 297 -15 217 83 0 28 chrX 22098629 22098665 -140501265 - MER5A DNA MER1_type -24 165 131 416 200 13 0 chrX 22098765 22098840 -140501090 + MER21B LTR ERV1 12 87 -776 2734 228 109 29 chrX 22098864 22099598 -140500332 + MER21B LTR ERV1 19 811 -52 734 265 145 44 chrX 22099624 22100031 -140499899 - MLT1K LTR MaLR 0 588 141 271 139 28 69 chrX 22100198 22100270 -140499660 - MER20 DNA MER1_type 0 219 151 1037 167 0 23 chrX 22100344 22100518 -140499412 + MER20 DNA MER1_type 50 219 0 1917 247 74 60 chrX 22101490 22102203 -140497727 - MER21B LTR ERV1 -124 739 17 204 320 133 8 chrX 22102330 22102458 -140497472 - L2 LINE L2 -6 3307 3164 782 280 93 67 chrX 22102511 22102961 -140496969 + MLT1L LTR MaLR 119 580 -35 2422 97 3 0 chrX 22103536 22103845 -140496085 - AluSg SINE Alu 0 310 1 18501 23 5 0 chrX 22103906 22106814 -140493116 + L1PA4 LINE L1 3234 6152 -3 501 243 164 0 chrX 22106825 22106977 -140492953 - MER5A DNA MER1_type -1 188 12 272 325 18 0 chrX 22107104 22107218 -140492712 - MLT1I LTR MaLR -238 171 56 246 309 8 41 chrX 22107237 22107360 -140492570 - L2 LINE L2 -162 3110 2992 294 199 121 22 chrX 22107411 22107508 -140492422 + L1M LINE L1 5325 5423 -732 1100 153 107 0 chrX 22108101 22108297 -140491633 - MER20 DNA MER1_type 0 219 3 1044 266 17 14 chrX 22108726 22109023 -140490907 + L2 LINE L2 2097 2394 -920 490 252 32 19 chrX 22109024 22109179 -140490751 - MLT2E LTR ERVL -1 627 471 1819 212 36 108 chrX 22109190 22109802 -140490128 - MLT2F LTR ERVL -92 571 4 534 182 0 18 chrX 22109806 22109916 -140490014 + L2 LINE L2 2392 2499 -815 2392 60 40 10 chrX 22110494 22110795 -140489135 + AluY SINE Alu 1 310 -1 6336 118 36 12 chrX 22110804 22111645 -140488285 - L1MC1 LINE L1 -23 6310 5430 2021 131 7 4 chrX 22111645 22111952 -140487978 - AluJb SINE Alu -5 307 10 6336 118 36 12 chrX 22111952 22112145 -140487785 - L1MC1 LINE L1 -903 5430 5243 430 198 11 11 chrX 22112333 22112424 -140487506 - MER115 DNA AcHobo -12 681 591 2218 107 0 16 chrX 22112817 22113134 -140486796 - AluSx SINE Alu 0 312 1 334 274 214 8 chrX 22113205 22113322 -140486608 - MER5A DNA MER1_type -1 188 48 2402 69 3 19 chrX 22114047 22114364 -140485566 + AluSp SINE Alu 1 312 -1 2024 123 0 47 chrX 22114398 22114715 -140485215 + AluSq SINE Alu 1 302 -11 275 269 64 0 chrX 22114736 22114799 -140485131 - MLT1G LTR MaLR 0 590 532 991 162 35 83 chrX 22114799 22115028 -140484902 - MER20 DNA MER1_type -1 218 1 275 269 64 0 chrX 22115028 22115124 -140484806 - MLT1G LTR MaLR -58 532 370 422 274 92 37 chrX 22115199 22115363 -140484567 - MLT1G LTR MaLR -299 291 119 230 178 0 0 chrX 22115524 22115569 -140484361 + LTR66 LTR ERVL 395 439 -171 432 271 20 70 chrX 22115625 22115824 -140484106 - MIR SINE MIR -61 201 13 2267 127 52 0 chrX 22116242 22116572 -140483358 + MER7A DNA MER2_type 2 346 0 354 284 47 8 chrX 22116725 22116852 -140483078 + MER5A DNA MER1_type 48 179 -10 290 320 0 0 chrX 22116912 22116992 -140482938 + MIR3 SINE MIR 78 158 -50 734 259 18 6 chrX 22117054 22117220 -140482710 + MER5B DNA MER1_type 11 178 0 764 144 39 4 chrX 22117307 22117442 -140482488 + MSTB LTR MaLR 1 122 -304 1631 153 8 0 chrX 22119239 22119493 -140480437 - MER57A LTR ERV1 -147 256 1 231 268 250 0 chrX 22119890 22120002 -140479928 + MIR SINE MIR 37 176 -86 29 0 0 0 chrX 22120308 22120337 -140479593 + AT_rich Low_complexity Low_complexity 1 29 0 2204 131 0 0 chrX 22120342 22120648 -140479282 + AluJb SINE Alu 1 306 -6 340 233 67 0 chrX 22120649 22120739 -140479191 - MIR SINE MIR -6 256 161 2228 72 3 46 chrX 22120921 22121228 -140478702 - AluSg SINE Alu -16 294 1 3901 116 18 3 chrX 22121228 22121839 -140478091 - L1M1 LINE L1 -4487 3078 2459 2266 101 3 0 chrX 22122032 22122329 -140477601 + AluSx SINE Alu 1 298 -14 230 334 75 56 chrX 22122339 22122425 -140477505 - L1MEd LINE L1 -5328 791 708 1632 138 32 28 chrX 22122425 22122707 -140477223 - AluJo SINE Alu -17 295 13 230 334 75 56 chrX 22122707 22122925 -140477005 - L1MEd LINE L1 -5411 708 481 848 164 0 15 chrX 22123251 22123385 -140476545 + FLAM_A SINE Alu 1 132 -1 23 0 0 0 chrX 22123425 22123448 -140476482 + AT_rich Low_complexity Low_complexity 1 23 0 716 273 47 25 chrX 22123517 22123795 -140476135 - L1MEd LINE L1 -4884 1646 1363 1362 251 87 63 chrX 22123805 22124310 -140475620 + LTR33A LTR ERVL 7 523 0 2558 44 0 0 chrX 22124361 22124657 -140475273 - AluY SINE Alu -15 296 1 339 312 0 50 chrX 22124661 22124699 -140475231 - L1MEd LINE L1 -6373 167 129 2237 170 135 18 chrX 22124699 22125151 -140474779 + MLT1D LTR MaLR 1 505 0 339 312 0 50 chrX 22125151 22125253 -140474677 - L1MEd LINE L1 -6411 129 34 406 202 175 0 chrX 22125313 22125427 -140474503 - L1MC4a LINE L1 -939 6869 6736 1997 125 7 3 chrX 22126128 22126423 -140473507 + AluSx SINE Alu 1 296 -16 1228 296 62 11 chrX 22126469 22126936 -140472994 + LTR16C LTR ERVL 1 491 0 488 316 65 30 chrX 22127295 22127757 -140472173 - MER20B DNA MER1_type 0 783 306 244 253 42 42 chrX 22128974 22129069 -140470861 + L1 LINE L1 4630 4724 -1422 1984 150 0 13 chrX 22129095 22129395 -140470535 - AluJo SINE Alu -16 296 1 321 295 17 15 chrX 22129423 22129556 -140470374 - L1MEd LINE L1 -847 1643 1493 2050 96 0 7 chrX 22129558 22129838 -140470092 + AluSq SINE Alu 34 311 -2 271 272 19 19 chrX 22129947 22130050 -140469880 - L1MC4 LINE L1 0 8042 7940 618 269 84 47 chrX 22130105 22130511 -140469419 - L1MEd LINE L1 -1042 1448 938 2502 87 0 0 chrX 22130756 22131068 -140468862 - AluSp SINE Alu -1 312 1 3172 198 44 19 chrX 22131136 22131823 -140468107 - L1ME3 LINE L1 -67 6095 5392 986 206 22 38 chrX 22131971 22132202 -140467728 - MIR SINE MIR -24 238 4 7410 61 13 0 chrX 22132343 22133547 -140466383 - L1PA8 LINE L1 -15 6157 4949 1275 54 0 0 chrX 22133547 22133694 -140466236 - L1MA2 LINE L1 -18 6286 6138 2278 115 0 0 chrX 22133694 22133999 -140465931 - AluSx SINE Alu -7 305 1 331 225 90 34 chrX 22135199 22135288 -140464642 - MER5A DNA MER1_type -3 186 93 1230 188 47 76 chrX 22135289 22135696 -140464234 - MLT1A1 LTR MaLR 0 457 1 7608 114 16 4 chrX 22135869 22136965 -140462965 - Tigger2 DNA MER2_type -1608 1110 1 2094 99 42 3 chrX 22136995 22137278 -140462652 - AluSx SINE Alu -18 294 1 225 0 0 0 chrX 22137343 22137368 -140462562 + (TA)n Simple_repeat Simple_repeat 2 26 0 1225 103 62 16 chrX 22137398 22137592 -140462338 - L1PA16 LINE L1 -9 6157 5955 591 260 30 24 chrX 22137785 22137954 -140461976 - MLT1H LTR MaLR -379 170 1 610 244 6 24 chrX 22138244 22138408 -140461522 + MLT1H LTR MaLR 10 170 -379 2642 228 44 53 chrX 22138543 22139380 -140460550 + L1MC4 LINE L1 6833 7662 -380 13162 32 1 0 chrX 22139522 22141071 -140458859 - L1P LINE L1 -1329 4817 3268 6717 122 6 24 chrX 22141187 22142249 -140457681 + MER11C LTR ERVK 15 1057 -14 572 57 0 0 chrX 22142288 22142358 -140457572 - MER11B LTR ERVK -1166 70 1 462 290 37 19 chrX 22142362 22142524 -140457406 - LTR33 LTR ERVL -102 419 255 1237 136 78 127 chrX 22142638 22142970 -140456960 - MLT2C1 LTR ERVL 0 397 82 723 229 78 6 chrX 22143120 22143299 -140456631 + L2 LINE L2 3122 3313 0 1788 140 9 62 chrX 22143350 22143672 -140456258 - AluJb SINE Alu -7 305 1 2708 177 31 43 chrX 22143813 22144368 -140455562 - MLT1F1 LTR MaLR 0 567 20 926 115 0 43 chrX 22145748 22145887 -140454043 + FLAM_C SINE Alu 1 133 0 2519 116 0 76 chrX 22146672 22146728 -140453202 - MER4B LTR ERV1 0 610 551 2178 101 7 3 chrX 22146728 22147024 -140452906 + AluSx SINE Alu 1 297 -15 2519 116 0 76 chrX 22147024 22147417 -140452513 - MER4B LTR ERV1 -59 551 195 2333 100 0 3 chrX 22147541 22147850 -140452080 - AluSq SINE Alu -5 308 1 253 218 0 55 chrX 22147850 22147905 -140452025 - MER20 DNA MER1_type -163 56 5 439 255 130 56 chrX 22147905 22148136 -140451794 - L1ME4a LINE L1 -240 5881 5634 2449 87 0 3 chrX 22148141 22148451 -140451479 - AluSg SINE Alu -1 309 1 741 150 30 4 chrX 22148498 22148752 -140451178 + L1MB5 LINE L1 5587 5882 -292 456 125 14 0 chrX 22148756 22148828 -140451102 - LTR35 LTR ERV1 -4 614 542 * 1314 121 0 42 chrX 22148820 22149035 -140450895 - LTR35 LTR ERV1 -228 390 185 252 0 0 0 chrX 22149678 22149706 -140450224 + (TA)n Simple_repeat Simple_repeat 1 28 0 1955 139 84 8 chrX 22149906 22150273 -140449657 + L1MA8 LINE L1 5896 6290 -1 436 281 146 20 chrX 22152109 22152308 -140447622 + LTR33 LTR ERVL 46 269 -252 2016 221 24 44 chrX 22152321 22152824 -140447106 - MLT2B1 LTR ERVL 0 520 28 575 224 235 0 chrX 22152824 22153020 -140446910 + LTR33 LTR ERVL 279 520 -1 183 283 65 11 chrX 22153306 22153398 -140446532 + L2 LINE L2 3217 3313 0 1351 146 38 0 chrX 22153770 22153983 -140445947 + AluJb SINE Alu 82 302 -10 1319 193 122 55 chrX 22154267 22154651 -140445279 + MER31B LTR ERV1 1 410 -56 215 317 0 0 chrX 22154891 22154951 -140444979 - MIR SINE MIR -14 248 189 * 466 227 184 0 chrX 22154949 22155090 -140444840 + MIR SINE MIR 71 237 -25 831 192 73 19 chrX 22155090 22155304 -140444626 - MLT1A2 LTR MaLR 0 374 179 2532 59 0 0 chrX 22155310 22155616 -140444314 + AluY SINE Alu 1 306 -5 1605 84 57 0 chrX 22155616 22155843 -140444087 + MSTA LTR MaLR 189 428 0 1735 109 69 47 chrX 22156198 22156518 -140443412 + L1MA7 LINE L1 5963 6289 -2 259 154 64 51 chrX 22156874 22156952 -140442978 + L1ME4a LINE L1 6030 6108 -13 813 268 84 0 chrX 22157035 22157248 -140442682 - MIR SINE MIR -21 241 11 2207 76 18 0 chrX 22158163 22158465 -140441465 - AluSp SINE Alu 0 307 1 262 295 54 31 chrX 22158694 22158823 -140441107 - L2 LINE L2 -1075 2239 2108 742 256 126 70 chrX 22159299 22159744 -140440186 - MLT1H LTR MaLR 0 549 80 2296 144 67 31 chrX 22160424 22160841 -140439089 + MSTB1 LTR MaLR 1 432 0 2687 147 92 26 chrX 22161280 22161826 -140438104 + L1MB8 LINE L1 5597 6178 0 293 278 82 0 chrX 22162183 22162280 -140437650 + L2 LINE L2 3209 3313 0 2119 128 0 0 chrX 22163477 22163766 -140436164 + AluSx SINE Alu 9 297 -15 403 167 71 12 chrX 22164613 22164697 -140435233 - MLT1L LTR MaLR -2 613 525 2378 162 20 0 chrX 22164704 22165099 -140434831 - MER57A LTR ERV1 0 403 1 1500 107 120 9 chrX 22165099 22165332 -140434598 - MER57A-int LTR ERV1 0 7537 7279 503 61 24 49 chrX 22165332 22165414 -140434516 - LTR54B LTR ERV1 -367 131 52 17007 129 14 17 chrX 22165417 22167996 -140431934 - MER57A-int LTR ERV1 -4968 2569 1 2310 159 15 29 chrX 22167996 22168025 -140431905 - MER57A LTR ERV1 0 403 375 2365 81 0 13 chrX 22168025 22168280 -140431650 - AluSx SINE Alu -7 305 53 318 26 0 0 chrX 22168280 22168319 -140431611 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 2365 81 0 13 chrX 22168319 22168372 -140431558 - AluSx SINE Alu -259 53 1 2310 159 15 29 chrX 22168372 22168751 -140431179 - MER57A LTR ERV1 -28 375 1 192 267 238 0 chrX 22169159 22169260 -140430670 + MIR SINE MIR 52 176 -86 29 0 0 0 chrX 22169566 22169595 -140430335 + AT_rich Low_complexity Low_complexity 1 29 0 2222 131 0 0 chrX 22169600 22169906 -140430024 + AluJb SINE Alu 1 306 -6 313 222 62 0 chrX 22169916 22169997 -140429933 - MIR SINE MIR -16 246 161 374 53 18 0 chrX 22170126 22170183 -140429747 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2354 67 0 7 chrX 22170190 22170472 -140429458 - AluSg SINE Alu -30 280 1 290 139 208 14 chrX 22170755 22170827 -140429103 - L1ME3A LINE L1 -272 5898 5813 648 232 65 13 chrX 22170831 22170986 -140428944 - MIR SINE MIR -98 164 2 227 79 26 0 chrX 22171093 22171131 -140428799 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 289 54 27 0 chrX 22171304 22171341 -140428589 + MER68 LTR ERV1 354 391 -171 2411 64 3 3 chrX 22171523 22171819 -140428111 - AluY SINE Alu -15 296 1 1117 214 14 0 chrX 22172553 22172773 -140427157 - MER58A DNA MER1_type 0 224 2 3077 155 37 37 chrX 22172950 22173009 -140426921 + MER68 LTR ERV1 1 59 -503 2086 131 0 0 chrX 22173009 22173319 -140426611 + AluSx SINE Alu 1 310 0 3077 155 37 37 chrX 22173319 22173820 -140426110 + MER68 LTR ERV1 58 562 0 2120 116 0 20 chrX 22174357 22174495 -140425435 + AluJb SINE Alu 1 140 -172 2369 69 0 14 chrX 22174495 22174808 -140425122 + AluY SINE Alu 1 311 0 2120 116 0 20 chrX 22174808 22174971 -140424959 + AluJb SINE Alu 140 296 -16 649 131 10 0 chrX 22175195 22175294 -140424636 + LTR8A LTR ERV1 1 100 -627 24 53 0 0 chrX 22176827 22176865 -140423065 + AT_rich Low_complexity Low_complexity 1 38 0 245 265 0 26 chrX 22176897 22177014 -140422916 + (TA)n Simple_repeat Simple_repeat 1 114 0 2319 105 0 0 chrX 22177044 22177340 -140422590 - AluSx SINE Alu -16 296 1 2020 179 5 29 chrX 22177562 22177936 -140421994 - MLT1A1 LTR MaLR 0 365 1 243 348 82 13 chrX 22178259 22178417 -140421513 + L2 LINE L2 2607 2775 -539 540 301 29 19 chrX 22178456 22178662 -140421268 - MIR SINE MIR -4 258 51 3559 198 41 26 chrX 22178670 22179509 -140420421 + L1ME1 LINE L1 4620 5444 -722 1946 99 0 0 chrX 22179509 22179783 -140420147 + AluY SINE Alu 39 312 0 3559 198 41 26 chrX 22179783 22180153 -140419777 + L1ME1 LINE L1 5444 5848 -318 1800 190 3 0 chrX 22180153 22180443 -140419487 - AluJb SINE Alu -21 291 1 3559 198 41 26 chrX 22180443 22180755 -140419175 + L1ME1 LINE L1 5848 6154 -12 2027 118 0 51 chrX 22180808 22181121 -140418809 + AluJb SINE Alu 1 297 -15 618 95 0 0 chrX 22181436 22181531 -140418399 + (CA)n Simple_repeat Simple_repeat 2 96 0 1155 301 53 6 chrX 22181787 22182256 -140417674 + LTR16C LTR ERVL 1 491 0 473 306 60 29 chrX 22182616 22183099 -140416831 - MER20B DNA MER1_type 0 783 286 1032 105 0 0 chrX 22185216 22185427 -140414503 + (CTG)n Simple_repeat Simple_repeat 1 211 0 219 248 0 0 chrX 22186090 22186195 -140413735 + (CAG)n Simple_repeat Simple_repeat 3 107 0 23 78 0 0 chrX 22186739 22186790 -140413140 + AT_rich Low_complexity Low_complexity 1 51 0 1518 211 35 3 chrX 22186813 22187159 -140412771 - L1MB2 LINE L1 -3 6168 5812 2262 189 51 14 chrX 22187788 22188281 -140411649 - L1MB5 LINE L1 0 6174 5664 1254 158 167 12 chrX 22189247 22189583 -140410347 - Charlie5 DNA MER1_type 0 2624 2237 751 146 8 0 chrX 22189586 22189709 -140410221 - Charlie5 DNA MER1_type -2488 124 1 2378 77 13 3 chrX 22190059 22190357 -140409573 - AluSx SINE Alu -11 301 1 443 150 40 50 chrX 22190432 22190532 -140409398 + L1MC5 LINE L1 7811 7909 -52 245 252 122 61 chrX 22191794 22191925 -140408005 - MIR SINE MIR -56 206 68 498 222 0 0 chrX 22193107 22193233 -140406697 + (CA)n Simple_repeat Simple_repeat 1 126 0 1012 218 14 36 chrX 22193743 22194023 -140405907 - L2 LINE L2 -2435 879 606 378 0 0 0 chrX 22194103 22194145 -140405785 + (TG)n Simple_repeat Simple_repeat 1 42 0 2120 93 0 4 chrX 22194145 22194425 -140405505 - AluSx SINE Alu -33 279 1 181 362 110 17 chrX 22194444 22194745 -140405185 - L2 LINE L2 -22 3250 2922 1858 123 22 66 chrX 22194896 22195213 -140404717 + AluJb SINE Alu 5 307 -5 2055 143 3 7 chrX 22195790 22196098 -140403832 + AluSx SINE Alu 1 307 -5 340 241 13 0 chrX 22196165 22196244 -140403686 + MER116 DNA Mariner 1 80 0 268 295 32 21 chrX 22196526 22196621 -140403309 + MIR SINE MIR 121 216 -46 252 214 18 0 chrX 22196652 22196708 -140403222 + MER5A DNA MER1_type 20 76 -113 414 0 0 0 chrX 22197118 22197164 -140402766 + (TG)n Simple_repeat Simple_repeat 1 46 0 202 244 22 0 chrX 22197501 22197546 -140402384 + MER5A DNA MER1_type 61 106 -83 396 0 0 0 chrX 22197558 22197602 -140402328 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 825 147 0 8 chrX 22197602 22197720 -140402210 - FLAM_C SINE Alu -192 120 2 238 273 0 0 chrX 22197723 22197778 -140402152 + MER5A DNA MER1_type 129 183 -6 326 297 26 26 chrX 22197941 22198096 -140401834 + MIR SINE MIR 53 207 -55 195 42 0 0 chrX 22198300 22198324 -140401606 + (CA)n Simple_repeat Simple_repeat 2 25 0 908 179 12 0 chrX 22198657 22198830 -140401100 - MER5A DNA MER1_type 0 189 15 189 0 0 0 chrX 22198929 22198950 -140400980 + (T)n Simple_repeat Simple_repeat 1 21 0 413 110 30 100 chrX 22198988 22199088 -140400842 - MER5A DNA MER1_type -92 97 5 1804 159 3 10 chrX 22199905 22200194 -140399736 - AluJb SINE Alu -25 287 1 577 147 0 29 chrX 22200789 22200891 -140399039 + MER53 DNA DNA 2 100 -89 * 760 154 103 69 chrX 22200883 22201058 -140398872 - MER3 DNA MER1_type -28 181 1 910 193 28 6 chrX 22201568 22201749 -140398181 - MER5A DNA MER1_type -4 185 1 253 293 38 53 chrX 22202035 22202168 -140397762 - MIR SINE MIR -99 163 33 312 0 26 0 chrX 22202507 22202545 -140397385 + L1MB2 LINE L1 6097 6135 -36 2545 147 37 4 chrX 22203111 22203396 -140396534 - L1MA4 LINE L1 0 6482 6175 2265 97 61 19 chrX 22203396 22203756 -140396174 + THE1C LTR MaLR 1 375 0 2545 147 37 4 chrX 22203756 22203925 -140396005 - L1MA4 LINE L1 -307 6175 6013 26 0 0 0 chrX 22204027 22204053 -140395877 + AT_rich Low_complexity Low_complexity 1 26 0 4067 144 9 9 chrX 22204131 22205306 -140394624 - L1MA4 LINE L1 -474 6013 4838 2666 181 26 22 chrX 22205306 22206180 -140393750 - L1MA4 LINE L1 -3685 2643 1769 7103 163 33 4 chrX 22206183 22207706 -140392224 - L1MA4 LINE L1 -4065 1263 118 2183 109 7 0 chrX 22207807 22208090 -140391840 - AluSx SINE Alu -27 285 1 551 240 103 34 chrX 22208392 22208567 -140391363 - MLT1K LTR MaLR -24 564 378 2111 173 41 83 chrX 22208622 22209178 -140390752 - LTR9 LTR ERV1 0 612 80 714 280 73 5 chrX 22209342 22209560 -140390370 + LTR33 LTR ERVL 118 350 -171 3731 133 26 22 chrX 22209562 22210186 -140389744 - L1MB2 LINE L1 -263 5908 5283 2230 117 0 3 chrX 22210466 22210766 -140389164 - AluSx SINE Alu -13 299 1 1126 155 62 0 chrX 22210898 22211092 -140388838 + MER3 DNA MER1_type 4 209 0 931 220 44 4 chrX 22211646 22211873 -140388057 + MIR SINE MIR 27 262 0 450 273 23 0 chrX 22212072 22212204 -140387726 - LTR16A1 LTR ERVL -2 455 321 22 0 0 30 chrX 22212214 22212227 -140387703 + AT_rich Low_complexity Low_complexity 1 13 -19 1056 32 0 0 chrX 22212227 22212351 -140387579 - L1PA3 LINE L1 0 6155 6032 256 114 0 23 chrX 22212316 22212360 -140387570 - L1PA6 LINE L1 -89 6065 6023 22 0 0 30 chrX 22212351 22212370 -140387560 + AT_rich Low_complexity Low_complexity 13 32 0 * 234 271 37 37 chrX 22212378 22212485 -140387445 - LTR16A1 LTR ERVL -142 315 209 592 267 56 6 chrX 22212761 22212941 -140386989 - MER5A DNA MER1_type 0 189 1 1025 216 148 68 chrX 22213215 22213365 -140386565 - LTR16C LTR ERVL 0 491 354 2556 67 0 6 chrX 22213365 22213677 -140386253 + AluSg SINE Alu 1 310 0 1025 216 148 68 chrX 22213677 22213979 -140385951 - LTR16C LTR ERVL -137 354 3 416 342 87 27 chrX 22215232 22215671 -140384259 + L3 LINE CR1 1062 1526 -51 2122 95 9 80 chrX 22215682 22216007 -140383923 - AluSx SINE Alu -10 302 1 231 263 118 0 chrX 22216017 22216093 -140383837 - Charlie4 DNA MER1_type -5 1956 1872 2526 69 3 3 chrX 22216280 22216586 -140383344 - AluSp SINE Alu -7 306 1 318 306 41 25 chrX 22218070 22218191 -140381739 - L2 LINE L2 -18 3254 3132 843 180 133 16 chrX 22218535 22218763 -140381167 - MIR SINE MIR -1 261 23 363 106 39 39 chrX 22219098 22219202 -140380728 + (TTAGGG)n Simple_repeat Simple_repeat 2 105 0 493 231 0 38 chrX 22219232 22219418 -140380512 + (TTAGGG)n Simple_repeat Simple_repeat 1 179 0 740 182 0 0 chrX 22219793 22219914 -140380016 + MER63 DNA MER1_type 941 1061 0 288 0 0 0 chrX 22220258 22220290 -140379640 + (CA)n Simple_repeat Simple_repeat 2 33 0 463 201 0 125 chrX 22220335 22220479 -140379451 - MLT1H LTR MaLR 0 549 424 494 244 42 42 chrX 22220615 22220783 -140379147 - MLT1H LTR MaLR -379 170 3 255 282 57 119 chrX 22221205 22221323 -140378607 + MIR SINE MIR 40 139 -123 2366 103 0 0 chrX 22221323 22221633 -140378297 - AluSg SINE Alu 0 310 1 255 282 57 119 chrX 22221633 22221741 -140378189 + MIR SINE MIR 139 252 -10 426 39 0 0 chrX 22222090 22222142 -140377788 + (CA)n Simple_repeat Simple_repeat 2 53 0 2418 99 0 3 chrX 22223080 22223393 -140376537 - AluSx SINE Alu 0 312 1 5243 171 31 22 chrX 22223877 22223940 -140375990 - L1MB2 LINE L1 0 6171 6110 5538 71 8 1 chrX 22223940 22224656 -140375274 - L1PA10 LINE L1 -1 6167 5447 5243 171 31 22 chrX 22224656 22226509 -140373421 - L1MB2 LINE L1 -61 6110 4235 2413 76 0 0 chrX 22226537 22226826 -140373104 - AluSc SINE Alu -20 289 1 1822 161 7 7 chrX 22227606 22227904 -140372026 - AluJo SINE Alu -14 298 1 594 219 78 0 chrX 22227942 22228070 -140371860 - LTR67 LTR ERVL -11 546 409 2045 119 0 14 chrX 22228204 22228517 -140371413 - AluSx SINE Alu 0 309 1 353 217 12 12 chrX 22228583 22228666 -140371264 + MLT1L LTR MaLR 531 613 -2 233 250 0 0 chrX 22229503 22229559 -140370371 + LTR16A LTR ERVL 2 57 -393 460 291 23 70 chrX 22229664 22229922 -140370008 + LTR16B LTR ERVL 219 464 0 2339 95 7 0 chrX 22230007 22230311 -140369619 - AluSq SINE Alu -7 306 1 294 92 0 4 chrX 22230594 22230641 -140369289 + MADE1 DNA Mariner 1 38 -42 2522 72 3 0 chrX 22230790 22231095 -140368835 + AluSp SINE Alu 1 306 -7 193 200 146 0 chrX 22231201 22231256 -140368674 + MIR SINE MIR 79 141 -121 353 273 148 34 chrX 22231310 22231486 -140368444 - MIR SINE MIR -49 213 18 259 220 30 100 chrX 22232757 22232789 -140367141 + MIR SINE MIR 72 105 -157 1161 224 97 80 chrX 22232789 22233241 -140366689 + LTR16B LTR ERVL 5 464 0 259 220 30 100 chrX 22233241 22233308 -140366622 + MIR SINE MIR 105 164 -98 494 256 62 31 chrX 22233313 22233508 -140366422 - Charlie7 DNA MER1_type -2410 202 2 397 151 68 0 chrX 22234307 22234380 -140365550 - L1MB8 LINE L1 -1 6177 6100 291 30 0 0 chrX 22234380 22234413 -140365517 - U2 snRNA snRNA -155 33 1 262 88 31 7 chrX 22234416 22234457 -140365473 - L1MB7 LINE L1 -67 6113 6067 1466 213 38 45 chrX 22234457 22234857 -140365073 + MLT2C1 LTR ERVL 1 397 0 262 88 31 7 chrX 22234857 22234871 -140365059 - L1MB7 LINE L1 -113 6067 6055 308 339 0 8 chrX 22235076 22235200 -140364730 + L2 LINE L2 3159 3281 -32 2054 162 66 16 chrX 22235205 22235582 -140364348 + MSTD LTR MaLR 1 396 0 559 186 0 10 chrX 22235584 22235686 -140364244 + MSTD-int LTR MaLR 2 102 -1269 861 204 0 0 chrX 22235687 22235839 -140364091 + FAM SINE Alu 1 152 -33 22 35 0 0 chrX 22235841 22235870 -140364060 + AT_rich Low_complexity Low_complexity 1 29 0 5724 204 67 77 chrX 22235870 22237147 -140362783 + MSTD-int LTR MaLR 90 1378 -357 1721 157 11 11 chrX 22237147 22237421 -140362509 + AluJo SINE Alu 1 274 -38 2469 59 3 0 chrX 22237425 22237711 -140362219 - AluSq SINE Alu -17 296 10 5724 204 67 77 chrX 22237711 22237932 -140361998 + MSTD-int LTR MaLR 1381 1578 -157 1821 190 64 19 chrX 22237932 22238305 -140361625 + MSTD LTR MaLR 7 396 0 874 289 93 37 chrX 22238422 22238900 -140361030 + MLT1H LTR MaLR 1 549 0 188 356 17 0 chrX 22238966 22239025 -140360905 - L2 LINE L2 -25 3247 3188 1831 124 19 1 chrX 22239041 22239409 -140360521 + L1MB7 LINE L1 5089 5465 -741 845 195 34 7 chrX 22239404 22239602 -140360328 + L1MA9 LINE L1 6103 6300 0 * 4373 150 27 4 chrX 22239628 22240360 -140359570 + L1MB7 LINE L1 5432 6180 -4 183 301 0 86 chrX 22240361 22240454 -140359476 - MIR SINE MIR -96 112 28 1692 169 49 14 chrX 22240560 22240844 -140359086 - AluJo SINE Alu -18 294 1 383 264 29 70 chrX 22240844 22240912 -140359018 - L1ME4a LINE L1 -234 5887 5818 8439 151 21 14 chrX 22240912 22242107 -140357823 - L1PA15 LINE L1 -7 6158 4972 1832 95 191 35 chrX 22242107 22242422 -140357508 - THE1B LTR MaLR 0 364 1 8439 151 21 14 chrX 22242422 22242730 -140357200 - L1PA15 LINE L1 -1193 4972 4667 2366 88 0 3 chrX 22242730 22243026 -140356904 - AluY SINE Alu -16 295 1 8439 151 21 14 chrX 22243026 22243820 -140356110 - L1PA15 LINE L1 -1498 4667 3847 383 264 29 70 chrX 22243820 22243906 -140356024 - L1ME4a LINE L1 -303 5818 5744 2572 59 0 0 chrX 22243906 22244209 -140355721 - AluY SINE Alu -8 303 1 383 264 29 70 chrX 22244209 22244295 -140355635 - L1ME4a LINE L1 -377 5744 5656 812 190 12 12 chrX 22244321 22244484 -140355446 - L1ME3A LINE L1 0 6170 6008 820 189 11 28 chrX 22244933 22245113 -140354817 - MER5B DNA MER1_type -1 177 1 347 137 14 0 chrX 22246522 22246595 -140353335 + GA-rich Low_complexity Low_complexity 1 74 0 626 229 26 20 chrX 22246648 22246801 -140353129 + MIR SINE MIR 18 171 -91 260 243 162 14 chrX 22247434 22247508 -140352422 + LTR67 LTR ERVL 104 188 -369 933 106 61 0 chrX 22247866 22247998 -140351932 + AluSg/x SINE Alu 155 294 -15 693 272 11 0 chrX 22248074 22248254 -140351676 + MER91A DNA MER1_type 1 182 -14 319 283 29 87 chrX 22249120 22249189 -140350741 + LTR16C LTR ERVL 1 60 -431 2371 88 0 0 chrX 22249189 22249484 -140350446 - AluSx SINE Alu -17 295 1 319 283 29 87 chrX 22249484 22249552 -140350378 + LTR16C LTR ERVL 60 130 -361 882 188 18 18 chrX 22249586 22249747 -140350183 + LTR16C LTR ERVL 275 435 -56 1739 129 23 0 chrX 22249747 22250003 -140349927 - Tigger5 DNA MER2_type 0 2323 2062 305 214 0 0 chrX 22250001 22250057 -140349873 - Tigger5 DNA MER2_type -2261 62 7 * 2094 159 50 14 chrX 22250114 22250473 -140349457 + MSTA LTR MaLR 1 372 -56 382 68 203 0 chrX 22250921 22250980 -140348950 + MSTA LTR MaLR 356 426 0 767 179 0 0 chrX 22251441 22251564 -140348366 + FLAM_A SINE Alu 4 126 -7 2027 166 19 55 chrX 22251574 22251698 -140348232 - L1MA5 LINE L1 -248 6052 5925 886 233 0 0 chrX 22251698 22251870 -140348060 - FAM SINE Alu -3 172 1 2027 166 19 55 chrX 22251870 22252166 -140347764 - L1MA5 LINE L1 -375 5925 5647 245 261 85 15 chrX 22252476 22252606 -140347324 - L1ME4a LINE L1 -13 6108 5970 236 333 54 0 chrX 22252628 22252796 -140347134 - L1ME4a LINE L1 -239 5882 5706 352 279 74 98 chrX 22252915 22253130 -140346800 - L2 LINE L2 -9 3263 3054 540 306 106 13 chrX 22253164 22253465 -140346465 - L2 LINE L2 -168 3145 2817 3789 57 0 11 chrX 22253775 22254028 -140345902 + L1PA8 LINE L1 5700 5947 -225 3506 84 18 12 chrX 22254028 22254518 -140345412 - LTR15 LTR ERV1 0 493 1 3789 57 0 11 chrX 22254518 22254742 -140345188 + L1PA8 LINE L1 5947 6172 0 2349 94 3 0 chrX 22254991 22255290 -140344640 + AluSx SINE Alu 1 300 -12 3611 163 69 7 chrX 22255322 22256142 -140343788 + L1MB7 LINE L1 5143 6013 -171 374 298 149 34 chrX 22256194 22256429 -140343501 + L2 LINE L2 3006 3267 -5 2192 98 31 0 chrX 22256597 22256884 -140343046 - AluSx SINE Alu -15 297 2 23 0 0 0 chrX 22256884 22256907 -140343023 + AT_rich Low_complexity Low_complexity 1 23 0 1685 127 7 73 chrX 22256907 22257207 -140342723 - AluJo SINE Alu -31 281 2 382 232 134 12 chrX 22257215 22257379 -140342551 - MER112 DNA MER1_type -75 185 2 2188 110 13 13 chrX 22257524 22257834 -140342096 - AluSx SINE Alu -2 310 1 404 324 33 29 chrX 22258210 22258349 -140341581 + MIR SINE MIR 14 156 -106 487 101 25 13 chrX 22258349 22258428 -140341502 - MER116 DNA Mariner 0 80 1 404 324 33 29 chrX 22258428 22258498 -140341432 + MIR SINE MIR 156 224 -38 681 275 5 41 chrX 22258870 22259088 -140340842 + MER63A DNA MER1_type 1 210 0 2060 125 17 3 chrX 22259625 22259921 -140340009 + AluJb SINE Alu 1 300 -12 1414 241 93 30 chrX 22259952 22260589 -140339341 + MER20B DNA MER1_type 1 762 -21 2205 98 37 7 chrX 22260589 22260884 -140339046 + AluSx SINE Alu 1 304 -8 1414 241 93 30 chrX 22260884 22260908 -140339022 + MER20B DNA MER1_type 762 783 0 209 250 19 0 chrX 22261616 22261668 -140338262 - L2 LINE L2 -10 3262 3210 702 160 44 138 chrX 22261843 22261935 -140337995 + L1ME3A LINE L1 5961 6060 -110 2094 118 26 9 chrX 22261935 22262281 -140337649 - L1MB2 LINE L1 -2 6169 5818 2430 92 0 3 chrX 22262290 22262595 -140337335 - AluSx SINE Alu -8 304 1 702 160 44 138 chrX 22262595 22262717 -140337213 + L1ME3A LINE L1 6068 6164 -6 2191 136 97 8 chrX 22262771 22263162 -140336768 + MSTB LTR MaLR 1 426 0 2616 89 28 14 chrX 22263479 22263838 -140336092 - THE1B LTR MaLR 0 364 1 926 144 10 101 chrX 22263873 22264081 -140335849 + MER53 DNA DNA 1 189 0 353 302 17 0 chrX 22265125 22265241 -140334689 + MIR3 SINE MIR 82 199 -9 1531 98 5 0 chrX 22265364 22265558 -140334372 + AluSx SINE Alu 1 195 -117 1533 209 44 71 chrX 22266578 22266984 -140332946 - MSTD LTR MaLR -1 395 1 2445 138 99 54 chrX 22266989 22267453 -140332477 + MLT1D LTR MaLR 21 505 0 1144 312 131 31 chrX 22267534 22268809 -140331121 - L2 LINE L2 -26 3246 1860 1907 155 89 3 chrX 22269044 22269380 -140330550 - MLT1A1 LTR MaLR 0 365 1 433 256 17 35 chrX 22270508 22270649 -140329281 - MIR3 SINE MIR -39 169 34 547 244 0 30 chrX 22270729 22270860 -140329070 - MIR SINE MIR -74 188 62 364 199 254 97 chrX 22271484 22271702 -140328228 + L1M4 LINE L1 5483 5734 -450 389 141 14 0 chrX 22271715 22271786 -140328144 + GA-rich Low_complexity Low_complexity 3 74 0 1116 218 127 32 chrX 22272066 22272374 -140327556 + LTR16C LTR ERVL 151 487 -4 2103 143 0 0 chrX 22272846 22273146 -140326784 + AluJb SINE Alu 1 300 -12 2909 107 16 34 chrX 22273485 22273823 -140326107 - MSTB1 LTR MaLR 0 432 102 2589 83 22 19 chrX 22273823 22274186 -140325744 + THE1B LTR MaLR 1 364 0 2909 107 16 34 chrX 22274186 22274287 -140325643 - MSTB1 LTR MaLR -330 102 1 313 156 42 73 chrX 22274336 22274438 -140325492 + MIR SINE MIR 63 164 -44 1320 127 49 118 chrX 22274538 22274703 -140325227 - MER33 DNA MER1_type -2261 324 149 2081 104 60 60 chrX 22274703 22275013 -140324917 - THE1B LTR MaLR 0 364 52 2296 96 10 13 chrX 22275013 22275314 -140324616 - AluSg SINE Alu -10 300 1 2081 104 60 60 chrX 22275314 22275367 -140324563 - THE1B LTR MaLR -311 53 1 1320 127 49 118 chrX 22275367 22275410 -140324520 - MER33 DNA MER1_type -2436 149 105 726 187 0 8 chrX 22275410 22275533 -140324397 + FLAM_A SINE Alu 1 122 -11 1320 127 49 118 chrX 22275533 22275670 -140324260 - MER33 DNA MER1_type -2480 105 2 2194 106 36 0 chrX 22275880 22276181 -140323749 - AluSx SINE Alu 0 312 1 1761 160 0 21 chrX 22276854 22277170 -140322760 - AluJb SINE Alu 0 310 1 351 273 47 7 chrX 22277185 22277335 -140322595 - L1ME4a LINE L1 -216 5905 5750 547 308 58 76 chrX 22277539 22277550 -140322380 - MLT1L LTR MaLR -6 609 599 1883 151 31 0 chrX 22277550 22277841 -140322089 - AluJb SINE Alu -12 300 1 547 308 58 76 chrX 22277841 22278449 -140321481 - MLT1L LTR MaLR -16 599 1 2198 71 0 91 chrX 22278688 22279025 -140320905 + AluSx SINE Alu 1 309 0 240 191 0 0 chrX 22279152 22279199 -140320731 + L1MA3 LINE L1 6259 6305 0 3589 144 20 5 chrX 22279366 22279965 -140319965 + L1MC1 LINE L1 5721 6328 -5 492 252 47 8 chrX 22279994 22280121 -140319809 + MIR SINE MIR 20 151 -111 369 313 117 36 chrX 22280489 22280770 -140319160 - L2 LINE L2 -1 3312 3009 2220 113 7 3 chrX 22280863 22281164 -140318766 + AluSx SINE Alu 1 302 -10 813 222 6 33 chrX 22281182 22281362 -140318568 - MLT1F1 LTR MaLR -2 565 391 243 236 55 0 chrX 22281369 22281424 -140318506 - MLT1E LTR MaLR -145 448 391 258 164 0 0 chrX 22281428 22281483 -140318447 + GA-rich Low_complexity Low_complexity 1 55 0 591 117 7 117 chrX 22281499 22281636 -140318294 - L1MC3 LINE L1 -117 7668 7547 2432 86 0 10 chrX 22281675 22281988 -140317942 - AluSx SINE Alu -2 310 1 1732 75 106 0 chrX 22282011 22282266 -140317664 - L1MA5A LINE L1 -5 6292 6011 884 110 0 0 chrX 22282282 22282409 -140317521 - L1MA5A LINE L1 -4 6293 6167 991 101 0 27 chrX 22282409 22282558 -140317372 - L1MC3 LINE L1 -215 7570 7426 717 172 52 34 chrX 22282558 22282722 -140317208 - MLT1F1 LTR MaLR -394 158 1 213 175 0 0 chrX 22282745 22282785 -140317145 - MER5A DNA MER1_type -84 105 66 2412 97 3 0 chrX 22282785 22283095 -140316835 - AluSp SINE Alu -2 311 1 2416 79 0 0 chrX 22283100 22283392 -140316538 - AluSg SINE Alu -18 292 1 1793 148 0 7 chrX 22283394 22283677 -140316253 - AluJb SINE Alu -6 306 26 438 175 0 12 chrX 22283682 22283762 -140316168 - MER5A DNA MER1_type -110 79 1 2423 65 0 0 chrX 22284589 22284879 -140315051 - AluY SINE Alu -21 290 1 648 208 8 0 chrX 22285247 22285377 -140314553 - FLAM_A SINE Alu -2 131 1 22 56 0 0 chrX 22286872 22286908 -140313022 + AT_rich Low_complexity Low_complexity 1 36 0 435 251 34 75 chrX 22288109 22288284 -140311646 + MIR3 SINE MIR 1 169 -39 1098 170 25 5 chrX 22289231 22289431 -140310499 - MER20B DNA MER1_type -2 217 14 278 276 0 87 chrX 22289479 22289606 -140310324 - MER5B DNA MER1_type -61 117 2 1180 258 64 35 chrX 22289927 22290381 -140309549 - L1MC4a LINE L1 -1870 5938 5472 1305 144 16 70 chrX 22290490 22290747 -140309183 + AluJo SINE Alu 21 263 -49 860 196 55 37 chrX 22290758 22291015 -140308915 - L1MA9 LINE L1 -21 6313 6038 2365 115 0 0 chrX 22291380 22291693 -140308237 + AluSq SINE Alu 1 313 0 1995 42 0 4 chrX 22291948 22292187 -140307743 + L1PA7 LINE L1 5912 6149 -5 256 248 71 14 chrX 22292389 22292530 -140307400 - L1 LINE L1 -3322 2824 2676 408 202 30 30 chrX 22293198 22293297 -140306633 + Charlie5 DNA MER1_type 7 105 -2507 1563 160 96 0 chrX 22293301 22293644 -140306286 + Charlie5 DNA MER1_type 2235 2610 -2 2461 80 3 3 chrX 22293651 22293962 -140305968 - AluSp SINE Alu -2 311 1 2414 88 7 0 chrX 22294069 22294375 -140305555 + AluSc SINE Alu 1 308 -1 2098 121 0 0 chrX 22294402 22294712 -140305218 - AluSx SINE Alu 0 310 1 2293 81 0 0 chrX 22295359 22295689 -140304241 - AluSx SINE Alu 0 330 1 1915 154 0 7 chrX 22296352 22296644 -140303286 + AluJb SINE Alu 3 292 -20 302 214 12 0 chrX 22296644 22296728 -140303202 + GA-rich Low_complexity Low_complexity 1 85 0 1219 204 94 28 chrX 22297195 22297514 -140302416 - MER2 DNA MER2_type 0 345 6 1220 164 23 0 chrX 22297514 22297728 -140302202 - L1MC1 LINE L1 -28 6305 6087 930 178 35 6 chrX 22297730 22297904 -140302026 + MER58A DNA MER1_type 46 224 0 2119 116 0 47 chrX 22299138 22299457 -140300473 + AluSx SINE Alu 1 304 -8 2195 105 10 13 chrX 22300477 22300783 -140299147 + AluSx SINE Alu 1 305 -7 246 228 277 0 chrX 22300861 22300962 -140298968 - MIR SINE MIR -71 191 63 377 318 35 35 chrX 22301396 22301569 -140298361 + MER5B DNA MER1_type 4 176 -2 2341 58 48 0 chrX 22302013 22302306 -140297624 - AluY SINE Alu -4 307 1 2054 128 178 8 chrX 22302483 22302849 -140297081 + MSTA LTR MaLR 1 428 0 248 258 72 21 chrX 22302849 22302946 -140296984 - MIR3 SINE MIR -42 166 65 1962 123 7 3 chrX 22303181 22303465 -140296465 - AluSx SINE Alu -7 305 21 523 292 80 1 chrX 22303758 22303958 -140295972 + MIR SINE MIR 45 258 -4 1914 104 29 14 chrX 22304705 22304984 -140294946 - AluJb SINE Alu -29 283 1 2038 126 17 7 chrX 22304990 22305284 -140294646 - AluSx SINE Alu -15 297 1 228 191 0 0 chrX 22305287 22305329 -140294601 - L2 LINE L2 -15 3298 3257 709 197 5 103 chrX 22305774 22305821 -140294109 - L1MC4 LINE L1 -96 7946 7896 189 0 0 0 chrX 22305821 22305842 -140294088 + (TC)n Simple_repeat Simple_repeat 1 21 0 709 197 5 103 chrX 22305842 22306007 -140293923 - L1MC4 LINE L1 -146 7896 7755 2342 110 0 0 chrX 22306041 22306351 -140293579 + AluSx SINE Alu 1 310 -2 365 244 78 17 chrX 22306782 22306897 -140293033 + HAL1 LINE L1 788 909 -1598 949 254 149 20 chrX 22307004 22307484 -140292446 + MLT1G LTR MaLR 7 528 -62 1875 144 7 3 chrX 22307606 22307890 -140292040 - AluJo SINE Alu -11 301 17 662 131 28 0 chrX 22308307 22308481 -140291449 + L1PA16 LINE L1 5945 6158 -8 887 86 0 0 chrX 22308890 22309006 -140290924 + AluSp/q SINE Alu 194 309 -4 2366 85 0 26 chrX 22309382 22309689 -140290241 + AluSx SINE Alu 1 299 -13 2376 113 0 0 chrX 22310378 22310688 -140289242 + AluSx SINE Alu 1 310 -2 716 189 0 8 chrX 22311124 22311251 -140288679 - FLAM_A SINE Alu -6 127 2 301 342 45 7 chrX 22311251 22311406 -140288524 - MIR SINE MIR -56 206 46 749 235 132 15 chrX 22311452 22311724 -140288206 + MER46C DNA MER2_type 1 304 -34 264 281 90 0 chrX 22311892 22311981 -140287949 - L1MC4a LINE L1 -1213 6595 6499 1676 84 0 9 chrX 22312016 22312230 -140287700 + AluSq SINE Alu 11 222 -91 313 45 0 0 chrX 22312230 22312274 -140287656 + AluSq SINE Alu 259 302 0 1828 179 126 29 chrX 22312277 22312648 -140287282 - MER31B LTR ERV1 -5 461 43 1864 123 69 0 chrX 22312648 22312925 -140287005 + AluJb SINE Alu 1 296 -16 1828 179 126 29 chrX 22312925 22312973 -140286957 - MER31B LTR ERV1 -423 43 1 21 0 0 0 chrX 22313152 22313173 -140286757 + AT_rich Low_complexity Low_complexity 1 21 0 563 158 0 0 chrX 22313200 22313282 -140286648 - Tigger5 DNA MER2_type 0 2323 2242 2149 120 7 0 chrX 22313282 22313573 -140286357 + AluSx SINE Alu 1 293 -19 258 222 0 0 chrX 22313619 22313664 -140286266 - Tigger5 DNA MER2_type -2277 46 2 2359 75 10 0 chrX 22313695 22313989 -140285941 + AluY SINE Alu 1 297 -14 439 269 136 13 chrX 22314678 22314846 -140285084 - MIR SINE MIR -50 158 4 1229 254 119 53 chrX 22316396 22316960 -140282970 - MER21B LTR ERV1 -245 618 18 631 191 30 176 chrX 22317109 22317269 -140282661 - L1MC4 LINE L1 -1 8041 7974 222 37 0 0 chrX 22317269 22317296 -140282634 + (CA)n Simple_repeat Simple_repeat 1 27 0 631 191 30 176 chrX 22317296 22317539 -140282391 - L1MC4 LINE L1 -68 7974 7697 207 0 0 0 chrX 22317544 22317567 -140282363 + (T)n Simple_repeat Simple_repeat 1 23 0 2501 71 3 0 chrX 22317747 22318055 -140281875 - AluY SINE Alu -2 309 1 2330 109 0 3 chrX 22318249 22318561 -140281369 - AluSx SINE Alu -1 311 1 471 248 59 45 chrX 22319313 22319558 -140280372 - MLT1K LTR MaLR -178 410 147 513 271 47 16 chrX 22320629 22320758 -140279172 - MIR3 SINE MIR -31 177 45 1485 179 99 43 chrX 22321086 22321410 -140278520 - MER2 DNA MER2_type -1 343 2 373 271 14 75 chrX 22322252 22322407 -140277523 - L1ME4a LINE L1 -296 5825 5683 2075 103 11 4 chrX 22322407 22322714 -140277216 + AluSx SINE Alu 1 309 0 373 271 14 75 chrX 22322714 22322770 -140277160 - L1ME4a LINE L1 -438 5683 5625 303 237 156 65 chrX 22322830 22323016 -140276914 - L1ME4a LINE L1 -2336 5472 5270 2065 92 7 11 chrX 22323573 22323846 -140276084 + AluSg SINE Alu 35 306 -4 2351 136 7 69 chrX 22327639 22327774 -140272156 - L1MB8 LINE L1 -6 6172 6030 2489 93 0 0 chrX 22327774 22328084 -140271846 - AluSg SINE Alu 0 310 1 2351 136 7 69 chrX 22328084 22328396 -140271534 - L1MB8 LINE L1 -148 6030 5753 437 265 75 7 chrX 22328397 22328544 -140271386 + MIR SINE MIR 85 241 -21 24 0 0 0 chrX 22328655 22328679 -140271251 + AT_rich Low_complexity Low_complexity 1 24 0 815 176 123 28 chrX 22328700 22328984 -140270946 + L1MC5 LINE L1 7603 7913 -48 2274 127 140 11 chrX 22328992 22329371 -140270559 - MSTA LTR MaLR 0 428 1 2250 90 3 17 chrX 22329691 22329992 -140269938 - AluSx SINE Alu -15 297 1 249 211 0 0 chrX 22330465 22330522 -140269408 + (CA)n Simple_repeat Simple_repeat 2 58 0 2435 87 0 0 chrX 22332541 22332840 -140267090 + AluSq SINE Alu 1 299 -14 1505 132 0 0 chrX 22333539 22333752 -140266178 + AluSg/x SINE Alu 84 296 -16 28 29 0 0 chrX 22334804 22334839 -140265091 + AT_rich Low_complexity Low_complexity 1 35 0 270 304 13 0 chrX 22335781 22335860 -140264070 + MER5A DNA MER1_type 38 117 -72 2842 153 47 40 chrX 22337295 22337774 -140262156 + L1MB8 LINE L1 5624 6109 -69 2365 88 3 0 chrX 22337774 22338071 -140261859 - AluSq SINE Alu -15 298 1 2842 153 47 40 chrX 22338071 22338142 -140261788 + L1MB8 LINE L1 6109 6178 0 2354 99 0 0 chrX 22338186 22338498 -140261432 - AluSx SINE Alu 0 312 1 2352 77 0 3 chrX 22339175 22339486 -140260444 + AluSx SINE Alu 1 310 0 1060 181 0 0 chrX 22339509 22339680 -140260250 + FRAM SINE Alu 1 167 -9 387 0 0 0 chrX 22339813 22339856 -140260074 + (CA)n Simple_repeat Simple_repeat 1 43 0 757 235 83 95 chrX 22340204 22340342 -140259588 + L1ME4a LINE L1 5304 5442 -679 2405 96 0 0 chrX 22340342 22340645 -140259285 - AluSx SINE Alu -9 303 1 757 235 83 95 chrX 22340645 22340886 -140259044 + L1ME4a LINE L1 5442 5675 -446 1938 168 0 0 chrX 22340886 22341184 -140258746 + AluSx SINE Alu 1 298 -14 757 235 83 95 chrX 22341184 22341412 -140258518 + L1ME4a LINE L1 5675 5904 -217 252 264 23 35 chrX 22341423 22341510 -140258420 + L1ME4a LINE L1 5961 6046 -75 373 280 54 71 chrX 22341753 22341972 -140257958 - L1MC/D LINE L1 -2012 5796 5580 2196 136 0 0 chrX 22341972 22342281 -140257649 + AluJb SINE Alu 1 309 -3 373 280 54 71 chrX 22342281 22342300 -140257630 - L1MC/D LINE L1 -2228 5580 5562 2391 98 0 13 chrX 22343599 22343915 -140256015 + AluSx SINE Alu 1 312 0 2014 175 37 14 chrX 22343984 22344338 -140255592 - MLT1A1 LTR MaLR 0 365 4 461 214 160 15 chrX 22344999 22345130 -140254800 + HAL1 LINE L1 1548 1697 -810 236 132 0 0 chrX 22345659 22345697 -140254233 + HAL1b LINE L1 746 783 -565 * 239 296 106 38 chrX 22345694 22345826 -140254104 + HAL1 LINE L1 2352 2492 -15 2326 91 3 0 chrX 22345851 22346158 -140253772 + AluSx SINE Alu 1 308 -4 382 294 59 17 chrX 22346920 22347039 -140252891 - MIR SINE MIR -82 126 3 183 222 0 0 chrX 22348269 22348314 -140251616 + A-rich Low_complexity Low_complexity 1 45 0 26 74 0 0 chrX 22349611 22349665 -140250265 + AT_rich Low_complexity Low_complexity 1 54 0 298 227 182 11 chrX 22350314 22350402 -140249528 - MIR SINE MIR -61 147 45 2160 103 3 7 chrX 22350471 22350762 -140249168 + AluSx SINE Alu 21 310 -2 190 239 299 45 chrX 22350849 22350983 -140248947 + L2 LINE L2 2917 3084 -188 476 291 130 5 chrX 22351357 22351581 -140248349 - MIR SINE MIR -13 249 15 306 0 0 0 chrX 22352025 22352059 -140247871 + (TG)n Simple_repeat Simple_repeat 1 34 0 2071 98 22 0 chrX 22352059 22352335 -140247595 - AluSx SINE Alu -30 282 1 2263 100 3 3 chrX 22352959 22353259 -140246671 + AluSx SINE Alu 1 300 -12 346 273 0 27 chrX 22353744 22353854 -140246076 - L1MC4a LINE L1 -1913 5895 5789 1206 139 31 76 chrX 22353855 22354078 -140245852 + MER46A DNA MER2_type 3 215 -21 2458 87 0 3 chrX 22354101 22354413 -140245517 - AluSx SINE Alu -1 311 1 2492 133 12 38 chrX 22355264 22355642 -140244288 + L1MB3 LINE L1 5771 6138 -45 1890 135 0 30 chrX 22355642 22355945 -140243985 + AluJo SINE Alu 1 294 -18 2492 133 12 38 chrX 22355945 22355988 -140243942 + L1MB3 LINE L1 6138 6181 -2 521 251 90 59 chrX 22356158 22356198 -140243732 - L1ME4a LINE L1 -16 6105 6068 2346 115 0 0 chrX 22356198 22356510 -140243420 + AluSx SINE Alu 1 312 0 521 251 90 59 chrX 22356510 22356724 -140243206 - L1ME4a LINE L1 -53 6068 5843 1043 123 0 0 chrX 22356732 22356878 -140243052 - AluSg/x SINE Alu -84 226 81 472 189 33 26 chrX 22356878 22357031 -140242899 + GA-rich Low_complexity Low_complexity 3 156 0 497 294 94 39 chrX 22357041 22357401 -140242529 - L1MC4 LINE L1 -565 7477 7098 303 155 10 32 chrX 22357625 22357705 -140242225 - L1ME3A LINE L1 0 6162 6082 * 444 176 219 58 chrX 22357701 22357906 -140242024 - L1ME3 LINE L1 -119 6045 5808 * 672 286 85 48 chrX 22357896 22358083 -140241847 - L1MC4a LINE L1 -891 6917 6738 2239 98 3 49 chrX 22358083 22358408 -140241522 - AluSx SINE Alu -2 310 1 672 286 85 48 chrX 22358408 22358573 -140241357 - L1MC4a LINE L1 -1070 6738 6552 835 166 26 67 chrX 22359401 22359472 -140240458 - L1MB7 LINE L1 -1 6183 6111 2113 107 20 3 chrX 22359472 22359771 -140240159 + AluSx SINE Alu 1 304 -8 835 166 26 67 chrX 22359771 22359892 -140240038 - L1MB7 LINE L1 -73 6111 5999 2373 99 0 3 chrX 22361873 22362186 -140237744 - AluSx SINE Alu 0 312 1 253 158 0 0 chrX 22362891 22362929 -140237001 + MIR SINE MIR 211 248 -14 250 189 38 0 chrX 22362892 22362945 -140236985 + L2 LINE L2 3257 3311 -2 * 841 220 137 73 chrX 22363685 22364139 -140235791 - HAL1b LINE L1 -598 750 268 258 0 30 0 chrX 22364406 22364439 -140235491 + (TTTTA)n Simple_repeat Simple_repeat 2 95 0 2101 123 3 0 chrX 22364439 22364724 -140235206 - AluSx SINE Alu -1 318 1 451 287 32 16 chrX 22366730 22366918 -140233012 - L2 LINE L2 -27 3286 3096 391 273 0 66 chrX 22371759 22371880 -140228050 + MER94 DNA DNA 7 119 -15 278 245 50 72 chrX 22371888 22372027 -140227903 + MER5A DNA MER1_type 22 157 -32 227 158 0 0 chrX 22372455 22372493 -140227437 + MIR SINE MIR 114 151 -57 2026 133 0 7 chrX 22372494 22372779 -140227151 + AluJb SINE Alu 3 285 -27 270 0 0 0 chrX 22372779 22372809 -140227121 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1052 156 89 0 chrX 22373391 22373571 -140226359 + MER3 DNA MER1_type 10 205 -4 274 239 217 0 chrX 22373933 22374025 -140225905 + MER5B DNA MER1_type 67 178 0 219 36 0 0 chrX 22375278 22375306 -140224624 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 438 20 0 0 chrX 22375613 22375664 -140224266 + (TG)n Simple_repeat Simple_repeat 1 51 0 2108 98 25 0 chrX 22375670 22375946 -140223984 - AluSg SINE Alu -27 283 1 2408 169 53 25 chrX 22376130 22376616 -140223314 + MLT1D LTR MaLR 6 505 0 2244 86 0 51 chrX 22377131 22377445 -140222485 + AluSx SINE Alu 1 298 -14 261 228 89 0 chrX 22378716 22378795 -140221135 - MIR SINE MIR -85 123 38 2377 112 0 0 chrX 22380010 22380323 -140219607 + AluSq SINE Alu 1 313 0 654 93 43 22 chrX 22380331 22380470 -140219460 + GA-rich Low_complexity Low_complexity 3 144 0 2521 84 3 0 chrX 22383693 22384002 -140215928 - AluSx SINE Alu -2 310 1 285 261 109 81 chrX 22384040 22384535 -140215395 - L2 LINE L2 -1 3312 2804 709 255 89 46 chrX 22384606 22384875 -140215055 - L2 LINE L2 -421 2893 2604 2111 120 3 3 chrX 22384875 22385175 -140214755 + AluSx SINE Alu 1 300 -12 709 255 89 46 chrX 22385175 22385254 -140214676 - L2 LINE L2 -710 2604 2530 241 111 278 0 chrX 22385262 22385316 -140214614 - L1ME1 LINE L1 -3 6163 6095 605 229 98 0 chrX 22387705 22387858 -140212072 + MIR SINE MIR 92 259 -3 2310 102 0 3 chrX 22388033 22388328 -140211602 - AluSx SINE Alu -18 294 1 622 272 60 5 chrX 22388497 22388681 -140211249 + MIR SINE MIR 66 259 -3 422 233 62 52 chrX 22388754 22388947 -140210983 + MIR3 SINE MIR 5 199 -9 28 48 0 0 chrX 22389656 22389698 -140210232 + AT_rich Low_complexity Low_complexity 1 42 0 4056 32 0 0 chrX 22389738 22390204 -140209726 + L1PA7 LINE L1 5669 6134 -20 457 248 64 0 chrX 22390590 22390731 -140209199 + MIR SINE MIR 73 222 -40 909 132 0 0 chrX 22390732 22390861 -140209069 + FLAM_A SINE Alu 3 131 -2 204 139 0 0 chrX 22390939 22390975 -140208955 + MIR SINE MIR 213 248 -14 315 341 77 57 chrX 22391388 22391616 -140208314 + L2 LINE L2 2894 3133 -139 1771 163 57 0 chrX 22391616 22391898 -140208032 + AluJb SINE Alu 1 298 -14 315 341 77 57 chrX 22391898 22392035 -140207895 + L2 LINE L2 3133 3266 -6 301 311 87 66 chrX 22393286 22393572 -140206358 + L2 LINE L2 2979 3270 -2 1432 211 109 54 chrX 22394882 22395361 -140204569 + MLT1F1 LTR MaLR 51 555 -12 379 227 193 13 chrX 22395630 22395780 -140204150 + MER5A DNA MER1_type 13 189 0 1823 149 21 3 chrX 22395868 22396150 -140203780 + AluJo SINE Alu 1 287 -25 241 385 89 0 chrX 22398055 22398224 -140201706 + L3 LINE CR1 1384 1567 -10 192 216 0 0 chrX 22399579 22399616 -140200314 - MIR SINE MIR -70 192 156 201 39 0 0 chrX 22399971 22399997 -140199933 + (TG)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chrX 22400172 22400195 -140199735 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 971 182 101 0 chrX 22400447 22400645 -140199285 - MER20 DNA MER1_type -1 218 1 189 0 0 0 chrX 22400713 22400734 -140199196 + (TTA)n Simple_repeat Simple_repeat 1 21 0 339 220 10 30 chrX 22400780 22400880 -140199050 + MIR SINE MIR 152 249 -13 763 282 13 0 chrX 22401422 22401649 -140198281 - MIR SINE MIR -11 251 22 2395 76 3 3 chrX 22402607 22402909 -140197021 - AluY SINE Alu -9 302 1 2159 121 3 0 chrX 22403249 22403539 -140196391 - AluSx SINE Alu -21 291 1 2399 112 33 0 chrX 22403586 22403951 -140195979 - L1MA6 LINE L1 -6 6294 5918 937 160 1 0 chrX 22403951 22404110 -140195820 + L1MA6 LINE L1 5781 5940 -222 962 277 88 11 chrX 22404204 22404711 -140195219 + L2 LINE L2 2450 3016 -297 1040 81 7 0 chrX 22404725 22404861 -140195069 - AluSp/q SINE Alu -7 306 170 331 259 233 0 chrX 22404864 22405057 -140194873 + L2 LINE L2 3075 3312 -1 26 50 0 0 chrX 22405085 22405125 -140194805 + AT_rich Low_complexity Low_complexity 1 40 0 861 151 0 22 chrX 22405146 22405325 -140194605 + CT-rich Low_complexity Low_complexity 2 176 0 2358 113 0 0 chrX 22405332 22405643 -140194287 - AluSx SINE Alu -1 311 1 421 264 84 39 chrX 22405821 22405976 -140193954 - MER5A DNA MER1_type -23 166 5 335 225 167 10 chrX 22406671 22406787 -140193143 + MIR SINE MIR 3 141 -67 2377 99 0 3 chrX 22407414 22407717 -140192213 + AluSx SINE Alu 1 302 -10 22 0 0 0 chrX 22407777 22407799 -140192131 + AT_rich Low_complexity Low_complexity 1 22 0 2177 137 0 0 chrX 22408126 22408425 -140191505 + AluSx SINE Alu 1 299 -13 2526 67 0 3 chrX 22408929 22409241 -140190689 - AluY SINE Alu 0 311 1 1036 153 79 10 chrX 22409241 22409444 -140190486 - L1ME1 LINE L1 -56 6110 5894 461 240 52 31 chrX 22409444 22409636 -140190294 - L2 LINE L2 -774 2540 2345 509 271 92 44 chrX 22410301 22410762 -140189168 + L1ME4a LINE L1 5106 5585 -743 478 311 156 16 chrX 22410771 22411195 -140188735 + L1ME4a LINE L1 5634 6116 -5 2349 108 0 0 chrX 22412258 22412565 -140187365 + AluSg SINE Alu 1 307 -3 1744 144 0 62 chrX 22412842 22413147 -140186783 + AluJo SINE Alu 3 288 -24 394 285 8 0 chrX 22413166 22413296 -140186634 - MIR SINE MIR -63 199 69 2166 113 3 17 chrX 22413402 22413693 -140186237 + AluSx SINE Alu 1 287 -25 23 33 0 0 chrX 22413710 22413740 -140186190 + AT_rich Low_complexity Low_complexity 1 30 0 3548 145 78 10 chrX 22413864 22414491 -140185439 + L1MB4 LINE L1 5472 6141 -39 2059 94 4 14 chrX 22414491 22414766 -140185164 + AluSx SINE Alu 1 272 -40 1227 187 27 19 chrX 22414925 22415187 -140184743 - AluJb SINE Alu -38 274 11 2472 189 92 62 chrX 22415189 22416006 -140183924 - L1MC5 LINE L1 -269 7692 6852 232 255 75 43 chrX 22416018 22416112 -140183818 - MARNA DNA Mariner -42 544 448 229 238 0 0 chrX 22416090 22416132 -140183798 - MARNA DNA Mariner -415 171 130 * 2452 102 0 0 chrX 22416370 22416683 -140183247 - AluSq SINE Alu 0 313 1 656 197 47 8 chrX 22416954 22417081 -140182849 + MER5B DNA MER1_type 43 174 -4 2663 140 34 5 chrX 22417138 22417523 -140182407 + MSTD LTR MaLR 1 396 0 505 289 16 8 chrX 22417957 22418085 -140181845 + MIR SINE MIR 22 150 -112 2718 153 21 56 chrX 22418235 22418751 -140181179 + MLT1D LTR MaLR 1 498 -7 339 206 19 136 chrX 22419116 22419271 -140180659 + L1ME LINE L1 5541 5677 -444 2068 94 87 0 chrX 22420247 22420534 -140179396 + AluSx SINE Alu 1 312 0 2361 69 6 41 chrX 22420925 22421243 -140178687 - AluSq SINE Alu -6 307 1 472 282 80 1 chrX 22421830 22421971 -140177959 - MIR SINE MIR -73 189 40 2254 87 3 20 chrX 22422119 22422418 -140177512 - AluSx SINE Alu -18 294 1 324 293 36 111 chrX 22422788 22423013 -140176917 - MIR SINE MIR -3 259 52 280 263 61 35 chrX 22423683 22423797 -140176133 - L2 LINE L2 -3 3269 3153 241 271 10 73 chrX 22424055 22424151 -140175779 + MIR SINE MIR 3 92 -170 330 248 233 16 chrX 22424731 22424860 -140175070 + MIR SINE MIR 82 238 -24 22 56 0 0 chrX 22424891 22424927 -140175003 + AT_rich Low_complexity Low_complexity 1 36 0 993 155 0 0 chrX 22424959 22425137 -140174793 - AluSg/x SINE Alu 0 311 134 186 265 44 29 chrX 22425747 22425815 -140174115 + MIR SINE MIR 40 108 -100 386 228 18 61 chrX 22426078 22426192 -140173738 - MIR SINE MIR -2 260 152 306 0 0 0 chrX 22426861 22426895 -140173035 + (TA)n Simple_repeat Simple_repeat 1 34 0 828 191 69 5 chrX 22427091 22427280 -140172650 - L1M4 LINE L1 -784 5362 5162 1440 192 23 53 chrX 22427283 22427585 -140172345 - MLT1E LTR MaLR -129 464 172 2358 107 7 0 chrX 22427593 22427903 -140172027 - AluSq SINE Alu -1 312 1 242 271 0 0 chrX 22427926 22427974 -140171956 + polypyrimidine Low_complexity Low_complexity 2 49 0 302 326 0 0 chrX 22428012 22428110 -140171820 - L1MC4a LINE L1 -1897 5911 5814 1505 246 70 38 chrX 22428761 22429260 -140170670 - LTR33 LTR ERVL -1 520 6 267 234 143 143 chrX 22429276 22429430 -140170500 - MIR SINE MIR -71 191 38 2475 49 7 0 chrX 22429466 22429751 -140170179 + AluY SINE Alu 1 287 -24 229 149 64 0 chrX 22429800 22429847 -140170083 + L1MC5 LINE L1 7712 7761 -200 1218 171 9 27 chrX 22429867 22430030 -140169900 + MER20 DNA MER1_type 1 160 -59 2533 207 82 15 chrX 22430030 22430557 -140169373 + REP3 LTR ERV 1 562 0 1218 171 9 27 chrX 22430557 22430615 -140169315 + MER20 DNA MER1_type 160 218 -1 247 187 9 131 chrX 22430615 22430722 -140169208 + L1MC5 LINE L1 7808 7901 -60 386 261 115 38 chrX 22430854 22431011 -140168919 + MIR SINE MIR 56 224 -38 2058 101 0 14 chrX 22431211 22431529 -140168401 + AluSx SINE Alu 1 314 0 1459 135 4 52 chrX 22431590 22431820 -140168110 + MER20 DNA MER1_type 1 219 0 2121 117 7 0 chrX 22432254 22432544 -140167386 + AluSx SINE Alu 1 292 -20 37 0 0 0 chrX 22432775 22432812 -140167118 + AT_rich Low_complexity Low_complexity 1 37 0 2398 97 0 0 chrX 22432860 22433169 -140166761 - AluSx SINE Alu -3 309 1 351 44 0 0 chrX 22434171 22434216 -140165714 + (TG)n Simple_repeat Simple_repeat 1 45 0 264 86 0 0 chrX 22434698 22434733 -140165197 + U2 snRNA snRNA 2 36 -152 2325 110 0 0 chrX 22435013 22435314 -140164616 + AluSx SINE Alu 1 301 -11 2245 113 0 0 chrX 22435833 22436126 -140163804 - AluSq SINE Alu -20 293 1 1070 141 18 0 chrX 22436127 22436290 -140163640 + MLT1F1 LTR MaLR 400 565 -2 1894 97 0 16 chrX 22436694 22436979 -140162951 + AluSx SINE Alu 41 321 0 279 146 0 0 chrX 22437046 22437101 -140162829 + (CAT)n Simple_repeat Simple_repeat 2 56 0 633 202 0 0 chrX 22437218 22437322 -140162608 + FRAM SINE Alu 11 114 -62 1357 176 0 0 chrX 22437322 22437526 -140162404 + AluJo SINE Alu 85 288 -24 200 121 30 0 chrX 22437787 22437820 -140162110 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 273 119 0 0 chrX 22437820 22437862 -140162068 + (CA)n Simple_repeat Simple_repeat 2 43 0 183 100 0 0 chrX 22437938 22437968 -140161962 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 290 197 28 0 chrX 22438467 22438538 -140161392 + (CATA)n Simple_repeat Simple_repeat 2 74 0 * 849 181 0 0 chrX 22438535 22438712 -140161218 + (CA)n Simple_repeat Simple_repeat 2 178 0 1945 113 4 8 chrX 22438724 22438989 -140160941 - AluSx SINE Alu -25 287 24 2167 137 0 0 chrX 22439439 22439738 -140160192 + AluSx SINE Alu 1 299 -13 7008 205 97 52 chrX 22440194 22440242 -140159688 + Charlie2a DNA MER1_type 5 49 -2813 2556 71 3 0 chrX 22440242 22440551 -140159379 - AluSg SINE Alu 0 310 1 7008 205 97 52 chrX 22440551 22441614 -140158316 + Charlie2a DNA MER1_type 49 1063 -1799 309 26 0 0 chrX 22441614 22441652 -140158278 + (CA)n Simple_repeat Simple_repeat 2 39 0 7008 205 97 52 chrX 22441652 22443017 -140156913 + Charlie2a DNA MER1_type 1063 2690 -172 2012 92 29 25 chrX 22443017 22443336 -140156594 - AluSx SINE Alu 0 320 1 7008 205 97 52 chrX 22443336 22443364 -140156566 + Charlie2a DNA MER1_type 2690 2715 -147 2077 167 78 5 chrX 22443365 22443749 -140156181 + L1MC1 LINE L1 20 431 -5995 6012 164 27 68 chrX 22443777 22444340 -140155590 + L1MC1 LINE L1 4924 5508 -1105 2315 103 0 0 chrX 22444340 22444640 -140155290 + AluSx SINE Alu 1 300 -12 6012 164 27 68 chrX 22444640 22444994 -140154936 + L1MC1 LINE L1 5508 5875 -738 296 103 0 0 chrX 22444994 22445033 -140154897 - tRNA-Cys-TGC tRNA tRNA -34 41 3 6012 164 27 68 chrX 22445033 22445832 -140154098 + L1MC1 LINE L1 5875 6607 -6 451 183 17 128 chrX 22445835 22445915 -140154015 + Charlie2a DNA MER1_type 2698 2750 -112 2054 124 0 0 chrX 22445915 22446233 -140153697 - AluSx SINE Alu 0 318 1 451 183 17 128 chrX 22446233 22446331 -140153599 + Charlie2a DNA MER1_type 2750 2857 -5 1830 232 42 32 chrX 22446344 22446566 -140153364 + MER20B DNA MER1_type 1 219 -564 1962 141 6 35 chrX 22446566 22446879 -140153051 + AluJb SINE Alu 1 304 -8 1830 232 42 32 chrX 22446879 22447130 -140152800 + MER20B DNA MER1_type 219 479 -304 2296 100 0 13 chrX 22447220 22447520 -140152410 - AluSx SINE Alu -16 296 1 1035 217 0 0 chrX 22447674 22447849 -140152081 - FAM SINE Alu 0 175 1 1084 221 82 20 chrX 22448476 22448770 -140151160 + L2 LINE L2 2997 3308 -5 1017 78 31 0 chrX 22448772 22448901 -140151029 + AluSq/x SINE Alu 1 133 -180 2389 92 3 0 chrX 22448904 22449207 -140150723 + AluSg SINE Alu 1 304 -6 2074 113 3 11 chrX 22449711 22450018 -140149912 + AluSx SINE Alu 1 305 0 798 194 145 16 chrX 22451407 22451593 -140148337 - MER63A DNA MER1_type 0 210 1 2394 88 0 0 chrX 22452291 22452586 -140147344 - AluSg SINE Alu -3 307 13 241 186 12 198 chrX 22452821 22452938 -140146992 + HAL1 LINE L1 2371 2450 -57 1919 133 7 7 chrX 22452938 22453223 -140146707 + AluSx SINE Alu 1 285 -27 241 186 12 198 chrX 22453223 22453272 -140146658 + HAL1 LINE L1 2450 2506 -1 1170 194 73 118 chrX 22453870 22454420 -140145510 + L1MC5 LINE L1 7405 7929 -32 2259 181 19 67 chrX 22454646 22454819 -140145111 + MLT1E LTR MaLR 8 188 -405 2295 98 6 16 chrX 22454819 22455135 -140144795 + AluSq SINE Alu 1 313 0 2259 181 19 67 chrX 22455135 22455441 -140144489 + MLT1E LTR MaLR 188 464 -129 1702 190 37 32 chrX 22455444 22455906 -140144024 + L1ME LINE L1 5162 5625 -541 451 217 47 54 chrX 22456105 22456234 -140143696 - MIR SINE MIR -59 203 76 23 54 0 0 chrX 22456450 22456487 -140143443 + AT_rich Low_complexity Low_complexity 1 37 0 376 209 31 110 chrX 22456488 22456679 -140143251 - MER113 DNA MER1_type? -314 207 32 2092 146 7 0 chrX 22456800 22457146 -140142784 + AluJb SINE Alu 1 348 0 858 146 15 0 chrX 22457543 22457673 -140142257 + AluSq/x SINE Alu 1 132 -180 360 55 0 55 chrX 22458040 22458095 -140141835 + MER5A DNA MER1_type 3 54 -135 1283 78 0 0 chrX 22458095 22458249 -140141681 - AluSx SINE Alu -158 154 1 1781 130 4 0 chrX 22458598 22458845 -140141085 - AluSq SINE Alu -17 296 49 336 268 52 0 chrX 22458854 22458951 -140140979 - L2 LINE L2 0 3313 3212 333 299 67 39 chrX 22459027 22459208 -140140722 + MIR SINE MIR 3 186 -67 2460 72 0 13 chrX 22459358 22459665 -140140265 - AluSx SINE Alu -9 303 1 503 254 65 41 chrX 22459723 22459892 -140140038 + MER5A DNA MER1_type 15 187 -2 637 297 89 32 chrX 22460020 22460095 -140139835 + MIR SINE MIR 3 72 -190 1057 171 44 0 chrX 22460095 22460276 -140139654 + MER5A DNA MER1_type 1 189 0 637 297 89 32 chrX 22460276 22460446 -140139484 + MIR SINE MIR 72 262 0 2257 99 0 0 chrX 22460555 22460874 -140139056 - AluSx SINE Alu 0 319 1 472 282 80 1 chrX 22461461 22461602 -140138328 - MIR SINE MIR -73 189 40 2264 87 3 20 chrX 22461750 22462050 -140137880 - AluSx SINE Alu -17 295 1 324 293 36 111 chrX 22462420 22462645 -140137285 - MIR SINE MIR -3 259 52 280 263 61 35 chrX 22463315 22463429 -140136501 - L2 LINE L2 -3 3269 3153 241 271 10 73 chrX 22463687 22463783 -140136147 + MIR SINE MIR 3 92 -170 330 248 233 16 chrX 22464363 22464492 -140135438 + MIR SINE MIR 82 238 -24 22 56 0 0 chrX 22464523 22464559 -140135371 + AT_rich Low_complexity Low_complexity 1 36 0 1015 149 0 0 chrX 22464591 22464769 -140135161 - AluSg/x SINE Alu 0 311 134 186 265 44 29 chrX 22465379 22465447 -140134483 + MIR SINE MIR 40 108 -100 386 228 18 61 chrX 22465710 22465824 -140134106 - MIR SINE MIR -2 260 152 411 21 0 0 chrX 22466489 22466537 -140133393 + (TA)n Simple_repeat Simple_repeat 1 48 0 309 30 0 0 chrX 22466537 22466570 -140133360 - L1PA6 LINE L1 -18 6136 6104 2629 47 7 0 chrX 22467105 22467406 -140132524 - AluY SINE Alu -8 303 1 267 234 143 143 chrX 22467442 22467596 -140132334 + MIR SINE MIR 38 191 -71 1505 246 70 38 chrX 22467612 22468111 -140131819 + LTR33 LTR ERVL 6 520 -1 242 271 0 0 chrX 22468898 22468946 -140130984 + polypurine Low_complexity Low_complexity 2 49 0 2408 109 0 0 chrX 22468969 22469282 -140130648 + AluSq SINE Alu 1 313 0 1255 135 14 34 chrX 22469293 22469501 -140130429 - MER3 DNA MER1_type -5 204 1 2863 246 47 53 chrX 22469932 22470474 -140129456 - L2 LINE L2 -7 3306 2762 1861 108 35 0 chrX 22470474 22470733 -140129197 - AluSx SINE Alu -15 297 30 2863 246 47 53 chrX 22470733 22471345 -140128585 - L2 LINE L2 -551 2762 2142 514 273 15 8 chrX 22471380 22471512 -140128418 + L2 LINE L2 3181 3313 0 21 0 0 0 chrX 22471569 22471590 -140128340 + AT_rich Low_complexity Low_complexity 1 21 0 1538 253 145 37 chrX 22471606 22472338 -140127592 - L1ME4a LINE L1 -3 6118 5308 2000 137 26 7 chrX 22472421 22472727 -140127203 + AluJb SINE Alu 1 312 0 528 221 12 23 chrX 22473005 22473180 -140126750 + HsTC2 DNA Tc2 2 1894 -4 21 57 0 0 chrX 22473344 22473379 -140126551 + AT_rich Low_complexity Low_complexity 1 35 0 2433 81 0 0 chrX 22473422 22473731 -140126199 - AluY SINE Alu -2 309 1 2369 67 0 0 chrX 22474052 22474358 -140125572 - AluY SINE Alu 0 306 1 1201 194 0 28 chrX 22474603 22474820 -140125110 + MER6A DNA MER2_type 4 214 -391 1493 75 5 0 chrX 22474820 22475006 -140124924 + AluSx SINE Alu 1 187 -125 605 67 27 0 chrX 22475006 22475081 -140124849 + AluSx SINE Alu 218 294 -16 1549 132 23 12 chrX 22475083 22475340 -140124590 + MER6A DNA MER2_type 204 463 -142 2957 67 0 97 chrX 22475782 22476064 -140123866 + L1MA4A LINE L1 5882 6190 -113 2431 92 0 0 chrX 22476064 22476370 -140123560 + AluSx SINE Alu 1 306 -6 2957 67 0 97 chrX 22476370 22476528 -140123402 + L1MA4A LINE L1 6190 6278 -25 2104 102 3 3 chrX 22476528 22476811 -140123119 + AluSx SINE Alu 1 283 -29 2957 67 0 97 chrX 22476811 22476831 -140123099 + L1MA4A LINE L1 6278 6298 -5 1053 151 0 0 chrX 22476839 22476998 -140122932 + MER6A DNA MER2_type 447 605 0 * 4713 174 85 52 chrX 22476998 22477060 -140122870 + Charlie7 DNA MER1_type 92 150 -2462 1424 193 54 37 chrX 22477060 22477355 -140122575 - AluJo SINE Alu -12 300 1 4713 174 85 52 chrX 22477355 22477602 -140122328 + Charlie7 DNA MER1_type 150 388 -2224 2238 97 3 0 chrX 22477602 22477917 -140122013 + AluSg SINE Alu 1 316 0 4713 174 85 52 chrX 22477917 22478746 -140121184 + Charlie7 DNA MER1_type 388 1271 -1341 296 237 79 86 chrX 22479417 22479467 -140120463 - L1ME3A LINE L1 -1 6169 6120 2158 116 7 0 chrX 22479467 22479760 -140120170 + AluSx SINE Alu 1 295 -17 296 237 79 86 chrX 22479760 22479848 -140120082 - L1ME3A LINE L1 -50 6120 6032 1513 236 42 20 chrX 22479861 22480243 -140119687 - L1HS LINE L1 -190 5980 5600 2205 90 3 7 chrX 22480496 22480628 -140119302 + AluSx SINE Alu 1 132 -180 189 0 0 0 chrX 22480628 22480649 -140119281 + (TA)n Simple_repeat Simple_repeat 1 21 0 2205 90 3 7 chrX 22480649 22480804 -140119126 + AluSx SINE Alu 132 287 -25 384 292 123 19 chrX 22480824 22480978 -140118952 + MIR SINE MIR 87 256 -6 283 298 68 16 chrX 22482347 22482497 -140117433 - MIR3 SINE MIR -17 191 28 519 288 84 39 chrX 22482795 22483104 -140116826 + L2 LINE L2 1381 1703 -1611 284 298 12 0 chrX 22483131 22483215 -140116715 + GA-rich Low_complexity Low_complexity 1 85 0 344 315 152 4 chrX 22483293 22483550 -140116380 + L2 LINE L2 1804 2098 -1216 444 252 146 56 chrX 22483834 22484075 -140115855 + L2 LINE L2 2186 2404 -910 2265 102 3 0 chrX 22484075 22484369 -140115561 - AluSx SINE Alu -17 295 1 444 252 146 56 chrX 22484369 22484539 -140115391 + L2 LINE L2 2404 2634 -680 418 271 57 0 chrX 22484539 22484679 -140115251 - MER112 DNA MER1_type -85 175 28 1217 152 163 4 chrX 22484728 22484985 -140114945 + MER33 DNA MER1_type 27 324 0 396 0 0 0 chrX 22487586 22487630 -140112300 + (CA)n Simple_repeat Simple_repeat 2 45 0 517 152 0 20 chrX 22487723 22487822 -140112108 + MIR SINE MIR 48 144 -118 2077 120 3 13 chrX 22487919 22488218 -140111712 + AluSx SINE Alu 1 296 -16 232 143 0 0 chrX 22488496 22488538 -140111392 - LTR66 LTR ERVL -171 439 398 689 161 0 51 chrX 22488555 22488673 -140111257 + FLAM_A SINE Alu 6 117 -25 192 40 0 0 chrX 22489615 22489640 -140110290 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 186 148 111 111 chrX 22491318 22491372 -140108558 + L3 LINE CR1 1084 1137 -440 396 274 38 0 chrX 22491436 22491542 -140108388 - MIR SINE MIR -22 240 131 234 0 0 0 chrX 22491590 22491616 -140108314 + (T)n Simple_repeat Simple_repeat 1 26 0 596 189 53 79 chrX 22491748 22491938 -140107992 + MER5A DNA MER1_type 2 186 -3 * 713 204 37 37 chrX 22491790 22491952 -140107978 - MER5A DNA MER1_type -24 165 4 547 196 87 65 chrX 22492442 22492626 -140107304 + MER5A DNA MER1_type 1 188 -1 1887 158 3 7 chrX 22493458 22493762 -140106168 - AluJb SINE Alu -9 303 1 1236 204 109 69 chrX 22493846 22494316 -140105614 + L1ME4a LINE L1 5575 6025 -96 2284 91 3 3 chrX 22494316 22494614 -140105316 + AluSc SINE Alu 1 298 -11 378 0 0 0 chrX 22494614 22494656 -140105274 + (TA)n Simple_repeat Simple_repeat 2 43 0 1236 204 109 69 chrX 22494656 22494676 -140105254 + L1ME4a LINE L1 6025 6043 -78 1851 127 58 0 chrX 22494676 22494951 -140104979 - AluJb SINE Alu -16 296 6 1236 204 109 69 chrX 22494951 22494983 -140104947 + L1ME4a LINE L1 6043 6120 -1 300 301 102 12 chrX 22495331 22495368 -140104562 - MIR SINE MIR -14 248 216 601 44 0 121 chrX 22495368 22495418 -140104512 - MADE1 DNA Mariner 0 80 44 2334 95 0 0 chrX 22495418 22495714 -140104216 + AluSq SINE Alu 1 296 -17 601 44 0 121 chrX 22495714 22495754 -140104176 - MADE1 DNA Mariner -36 44 1 300 301 102 12 chrX 22495754 22495882 -140104048 - MIR SINE MIR -46 216 68 2141 107 3 13 chrX 22495943 22496242 -140103688 + AluSx SINE Alu 1 296 -16 622 77 13 0 chrX 22496275 22496353 -140103577 - MADE1 DNA Mariner -1 79 1 1644 211 61 41 chrX 22496446 22496858 -140103072 + LTR16C LTR ERVL 64 483 -8 2161 118 0 20 chrX 22496894 22497199 -140102731 - AluSx SINE Alu -13 299 1 2447 70 0 19 chrX 22497234 22497548 -140102382 - AluSg SINE Alu -2 308 1 1889 156 10 7 chrX 22497610 22497918 -140102012 + AluJb SINE Alu 1 309 -3 392 314 48 18 chrX 22498234 22498411 -140101519 - MIR3 SINE MIR -69 139 2 2176 124 0 3 chrX 22498642 22498940 -140100990 + AluSx SINE Alu 1 297 -15 1968 72 7 47 chrX 22499017 22499295 -140100635 + AluSq SINE Alu 41 307 -6 2068 94 87 0 chrX 22499686 22499973 -140099957 - AluSx SINE Alu 0 312 1 339 206 19 136 chrX 22500949 22501104 -140098826 - L1ME LINE L1 -444 5677 5541 2718 153 21 56 chrX 22501469 22501985 -140097945 - MLT1D LTR MaLR -7 498 1 505 289 16 8 chrX 22502135 22502263 -140097667 - MIR SINE MIR -112 150 22 2663 140 34 5 chrX 22502697 22503082 -140096848 - MSTD LTR MaLR 0 396 1 656 197 47 8 chrX 22503139 22503266 -140096664 - MER5B DNA MER1_type -4 174 43 2452 102 0 0 chrX 22503537 22503850 -140096080 + AluSq SINE Alu 1 313 0 229 227 0 0 chrX 22504088 22504132 -140095798 - MARNA DNA Mariner -131 455 412 * 232 255 75 43 chrX 22504108 22504202 -140095728 + MARNA DNA Mariner 448 544 -42 2584 185 90 75 chrX 22504214 22505033 -140094897 + L1MC5 LINE L1 6852 7689 -272 1665 170 7 18 chrX 22505033 22505335 -140094595 + AluJb SINE Alu 11 309 0 2584 185 90 75 chrX 22505335 22505410 -140094520 + L1MC5 LINE L1 7689 7761 -200 1218 171 9 27 chrX 22505430 22505593 -140094337 + MER20 DNA MER1_type 1 160 -59 2533 207 82 15 chrX 22505593 22506120 -140093810 + REP3 LTR ERV 1 562 0 1218 171 9 27 chrX 22506120 22506178 -140093752 + MER20 DNA MER1_type 160 218 -1 247 187 9 131 chrX 22506178 22506285 -140093645 + L1MC5 LINE L1 7808 7901 -60 386 261 115 38 chrX 22506417 22506574 -140093356 + MIR SINE MIR 56 224 -38 2058 101 0 14 chrX 22506774 22507092 -140092838 + AluSx SINE Alu 1 314 0 1459 135 4 52 chrX 22507153 22507383 -140092547 + MER20 DNA MER1_type 1 219 0 2121 117 7 0 chrX 22507817 22508107 -140091823 + AluSx SINE Alu 1 292 -20 37 0 0 0 chrX 22508338 22508375 -140091555 + AT_rich Low_complexity Low_complexity 1 37 0 2398 97 0 0 chrX 22508423 22508732 -140091198 - AluSx SINE Alu -3 309 1 351 44 0 0 chrX 22509734 22509779 -140090151 + (TG)n Simple_repeat Simple_repeat 1 45 0 264 86 0 0 chrX 22510261 22510296 -140089634 + U2 snRNA snRNA 2 36 -152 2325 110 0 0 chrX 22510576 22510877 -140089053 + AluSx SINE Alu 1 301 -11 260 245 0 0 chrX 22511636 22511689 -140088241 - L2 LINE L2 -2 3311 3259 1024 134 5 106 chrX 22512285 22512385 -140087545 + MER3 DNA MER1_type 15 83 -126 2179 88 60 0 chrX 22512385 22512668 -140087262 + AluSx SINE Alu 10 309 -3 1024 134 5 106 chrX 22512668 22512784 -140087146 + MER3 DNA MER1_type 83 209 0 311 207 184 23 chrX 22512810 22512897 -140087033 + MIR SINE MIR 48 148 -114 1853 182 0 3 chrX 22512904 22513212 -140086718 + AluJo SINE Alu 5 311 -1 489 76 0 0 chrX 22513214 22513280 -140086650 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 228 277 15 0 chrX 22513579 22513644 -140086286 - Tigger8 DNA MER2_type -591 75 10 2025 133 0 7 chrX 22514101 22514394 -140085536 - AluSx SINE Alu -21 291 1 291 85 0 0 chrX 22514446 22514493 -140085437 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 1811 99 0 0 chrX 22515068 22515300 -140084630 + AluSq SINE Alu 61 292 -21 1721 234 60 6 chrX 22516838 22517387 -140082543 + MLT2E LTR ERVL 1 626 -2 2141 118 7 0 chrX 22517649 22517945 -140081985 - AluSx SINE Alu -14 298 1 2424 93 3 0 chrX 22517967 22518278 -140081652 - AluSp SINE Alu -1 312 1 1342 139 18 0 chrX 22519047 22519270 -140080660 + L1MA5 LINE L1 6072 6298 -2 1648 152 5 3 chrX 22519283 22519669 -140080261 + L1MA4A LINE L1 5833 6280 -23 21 0 0 0 chrX 22519669 22519690 -140080240 + AT_rich Low_complexity Low_complexity 1 21 0 244 238 62 100 chrX 22519797 22519877 -140080053 - MER91A DNA MER1_type -3 193 117 697 276 133 36 chrX 22520159 22520460 -140079470 + MER115 DNA AcHobo 36 365 -328 819 192 132 27 chrX 22520486 22520585 -140079345 + MER115 DNA AcHobo 450 537 -156 456 19 0 0 chrX 22520585 22520638 -140079292 + (TG)n Simple_repeat Simple_repeat 2 54 0 819 192 132 27 chrX 22520638 22520757 -140079173 + MER115 DNA AcHobo 537 691 -2 2384 110 0 0 chrX 22520996 22521306 -140078624 + AluSx SINE Alu 1 310 -2 2358 117 42 28 chrX 22521812 22522171 -140077759 - THE1B LTR MaLR 0 364 1 778 222 98 10 chrX 22522251 22522445 -140077485 + L2 LINE L2 3103 3313 0 936 168 58 0 chrX 22523281 22523436 -140076494 + MLT1A1 LTR MaLR 202 365 0 2582 198 62 63 chrX 22523438 22523788 -140076142 + L1MB2 LINE L1 4563 4912 -1234 2887 148 17 23 chrX 22523788 22524145 -140075785 + L1MB2 LINE L1 5698 6053 -118 2310 55 3 3 chrX 22524145 22524436 -140075494 + AluY SINE Alu 1 291 -20 2887 148 17 23 chrX 22524436 22524552 -140075378 + L1MB2 LINE L1 6053 6168 -3 2582 198 62 63 chrX 22524552 22525006 -140074924 + L1MB2 LINE L1 4912 5366 -780 2055 128 3 3 chrX 22525277 22525574 -140074356 - AluSq SINE Alu -16 297 1 24 0 0 0 chrX 22525783 22525807 -140074123 + AT_rich Low_complexity Low_complexity 1 24 0 1743 227 26 40 chrX 22525885 22526259 -140073671 + L1MCb LINE L1 3 371 -5674 2482 138 5 22 chrX 22526259 22526628 -140073302 - THE1B LTR MaLR -1 363 1 1743 227 26 40 chrX 22526628 22526706 -140073224 + L1MCb LINE L1 371 449 -5596 2243 114 0 3 chrX 22526718 22527016 -140072914 + AluSq SINE Alu 1 297 -16 336 200 143 0 chrX 22527088 22527158 -140072772 + L1MCb LINE L1 486 565 -5480 1848 178 22 38 chrX 22527235 22527680 -140072250 + L1MCb LINE L1 1367 1804 -4760 2093 161 159 13 chrX 22528280 22528815 -140071115 + L1MCb LINE L1 1879 2491 -4073 2154 123 13 0 chrX 22528816 22529124 -140070806 + AluSq SINE Alu 1 312 -1 1674 189 0 34 chrX 22529189 22529514 -140070416 + AluJo SINE Alu 2 316 0 1355 206 45 14 chrX 22529716 22530003 -140069927 + AluJo SINE Alu 1 296 -16 2130 114 24 0 chrX 22530103 22530392 -140069538 - AluSx SINE Alu -16 296 1 475 183 43 0 chrX 22531004 22531097 -140068833 + L2 LINE L2 3215 3311 -2 2407 86 0 10 chrX 22531157 22531460 -140068470 + AluSx SINE Alu 1 300 -12 906 231 53 64 chrX 22531597 22531879 -140068051 - MLT1J LTR MaLR -9 502 224 2517 91 36 8 chrX 22531916 22532246 -140067684 - L1PA15 LINE L1 0 6165 5823 2241 108 0 13 chrX 22532246 22532553 -140067377 - AluSx SINE Alu -7 305 3 2517 91 36 8 chrX 22532553 22532583 -140067347 - L1PA15 LINE L1 -342 5823 5795 236 139 163 0 chrX 22532583 22532626 -140067304 + L1P4 LINE L1 5563 5612 -562 428 288 127 24 chrX 22532847 22533187 -140066743 - L1ME4a LINE L1 -273 5848 5474 750 156 71 21 chrX 22533356 22533497 -140066433 + MER69B DNA AcHobo 1 148 -1078 3224 88 9 93 chrX 22533633 22533971 -140065959 - L1PB1 LINE L1 -39 6112 5836 351 0 0 0 chrX 22533971 22534010 -140065920 + (TG)n Simple_repeat Simple_repeat 1 39 0 3224 88 9 93 chrX 22534010 22534217 -140065713 - L1PB1 LINE L1 -315 5836 5613 266 185 111 0 chrX 22534217 22534271 -140065659 + MER69B DNA AcHobo 124 183 -1043 620 179 154 43 chrX 22534273 22534435 -140065495 + MER63A DNA MER1_type 3 182 -28 * 1901 229 63 91 chrX 22534434 22534629 -140065301 + MER69B DNA AcHobo 182 381 -2145 2244 105 0 0 chrX 22534629 22534923 -140065007 - AluSg SINE Alu -16 294 1 1901 229 63 91 chrX 22534923 22535049 -140064881 + MER69B DNA AcHobo 381 509 -2017 2340 92 0 0 chrX 22535049 22535342 -140064588 + AluSx SINE Alu 1 293 -19 1901 229 63 91 chrX 22535342 22535381 -140064549 + MER69B DNA AcHobo 509 548 -1978 2400 155 3 11 chrX 22535381 22535749 -140064181 - MLT1A1 LTR MaLR 0 365 1 1901 229 63 91 chrX 22535749 22536268 -140063662 + MER69B DNA AcHobo 548 1039 -187 851 252 21 13 chrX 22536329 22536563 -140063367 - L1MC4 LINE L1 -454 7588 7353 23 33 0 0 chrX 22536934 22536964 -140062966 + GC_rich Low_complexity Low_complexity 1 30 0 2091 119 13 3 chrX 22538604 22538907 -140061023 - AluSq SINE Alu -7 306 1 303 372 44 0 chrX 22538951 22539064 -140060866 - L2 LINE L2 0 3272 3155 267 188 87 0 chrX 22539244 22539313 -140060617 - MIR SINE MIR -71 191 117 917 283 111 34 chrX 22539315 22539728 -140060202 - LTR67 LTR ERVL 0 557 113 301 340 54 74 chrX 22539925 22540331 -140059599 + L2 LINE L2 2828 3225 -47 779 292 38 8 chrX 22540595 22540835 -140059095 - Tigger8 DNA MER2_type -5 661 415 288 328 52 9 chrX 22540956 22541072 -140058858 - Tigger8 DNA MER2_type -462 204 84 2356 101 0 0 chrX 22541072 22541368 -140058562 - AluSx SINE Alu -13 299 4 221 328 55 78 chrX 22541701 22541774 -140058156 + L2 LINE L2 3139 3209 -63 2328 97 3 0 chrX 22541774 22542082 -140057848 - AluSq SINE Alu -4 309 1 221 328 55 78 chrX 22542082 22542136 -140057794 + L2 LINE L2 3209 3263 -9 546 254 111 21 chrX 22543342 22543531 -140056399 - MIR SINE MIR -42 220 15 2270 112 0 0 chrX 22543642 22543938 -140055992 - AluSx SINE Alu -16 296 1 2342 103 0 0 chrX 22544564 22544865 -140055065 - AluSq SINE Alu -12 301 1 2193 97 24 0 chrX 22544894 22545183 -140054747 - AluSx SINE Alu -16 296 1 2219 93 3 27 chrX 22545196 22545497 -140054433 - AluSx SINE Alu -17 295 2 562 279 36 12 chrX 22546778 22546943 -140052987 + MIR SINE MIR 24 192 -70 610 246 66 22 chrX 22548198 22548243 -140051687 + MER58C DNA MER1_type 3 45 -2375 964 138 0 7 chrX 22548243 22548388 -140051542 - L1MB8 LINE L1 -9 6169 6026 610 246 66 22 chrX 22548388 22548525 -140051405 + MER58C DNA MER1_type 45 193 -22 2695 229 194 58 chrX 22548675 22550041 -140049889 - L1MC4a LINE L1 -134 7674 6123 368 322 8 8 chrX 22550307 22550425 -140049505 + MIR3 SINE MIR 42 159 -49 203 333 176 0 chrX 22550421 22550523 -140049407 + L2 LINE L2 3151 3270 -2 * 1976 82 26 30 chrX 22550841 22551110 -140048820 + AluSq SINE Alu 1 268 -45 6544 74 15 71 chrX 22551508 22553173 -140046757 - SVA Other Other -518 1386 393 2846 137 71 25 chrX 22553256 22553780 -140046150 - L1MB5 LINE L1 0 6174 5627 2425 72 3 0 chrX 22553794 22554087 -140045843 - AluSg SINE Alu -10 300 7 1823 174 0 3 chrX 22554102 22554413 -140045517 - AluJb SINE Alu -2 310 1 1900 244 147 49 chrX 22554414 22554733 -140045197 - L1MC4a LINE L1 -743 5403 5117 2359 88 7 0 chrX 22554733 22555027 -140044903 - AluSq SINE Alu -17 296 1 1900 244 147 49 chrX 22555027 22555210 -140044720 - L1MC4a LINE L1 -1029 5117 4953 2234 108 0 7 chrX 22555210 22555515 -140044415 - AluSg SINE Alu -7 303 1 1900 244 147 49 chrX 22555515 22556077 -140043853 - L1MC4a LINE L1 -1193 4953 4768 2443 76 0 25 chrX 22556077 22556392 -140043538 - AluSg SINE Alu -3 307 1 1900 244 147 49 chrX 22556392 22556440 -140043490 - L1MC4a LINE L1 -1378 4768 4726 2161 106 7 7 chrX 22556541 22556844 -140043086 - AluSc SINE Alu -6 303 1 2151 79 4 0 chrX 22557283 22557569 -140042361 - AluY SINE Alu 0 303 17 1975 113 10 23 chrX 22558423 22558723 -140041207 - AluSg SINE Alu -14 296 1 243 250 0 0 chrX 22560948 22561020 -140038910 + T-rich Low_complexity Low_complexity 1 72 0 714 255 170 75 chrX 22561288 22562055 -140037875 - L2 LINE L2 -5 3308 2449 278 350 184 0 chrX 22562850 22563067 -140036863 + L2 LINE L2 2397 2653 -661 440 279 98 83 chrX 22563307 22563572 -140036358 + L2 LINE L2 2995 3263 -9 1055 181 29 5 chrX 22563920 22564124 -140035806 - MER3 DNA MER1_type 0 209 1 183 262 0 24 chrX 22564332 22564374 -140035556 - L3 LINE CR1 -13 1564 1524 * 258 280 120 0 chrX 22564342 22564417 -140035513 - MIR3 SINE MIR -26 182 99 916 147 0 0 chrX 22565853 22565982 -140033948 - FLAM_C SINE Alu -4 129 1 2259 117 0 0 chrX 22566809 22567108 -140032822 - AluSg SINE Alu -11 299 1 714 268 64 56 chrX 22568219 22568321 -140031609 + MIR SINE MIR 11 111 -151 2411 85 0 10 chrX 22568321 22568627 -140031303 - AluSx SINE Alu -9 303 1 714 268 64 56 chrX 22568627 22568774 -140031156 + MIR SINE MIR 111 262 0 22 0 0 0 chrX 22568852 22568874 -140031056 + AT_rich Low_complexity Low_complexity 1 22 0 245 290 0 14 chrX 22570648 22570717 -140029213 - Charlie4 DNA MER1_type -11 1950 1883 1077 285 60 54 chrX 22571282 22571821 -140028109 - L1MC5 LINE L1 -35 7926 7381 925 190 112 34 chrX 22571821 22572026 -140027904 + MER58A DNA MER1_type 1 221 -3 1077 285 60 54 chrX 22572026 22572171 -140027759 - L1MC5 LINE L1 -580 7381 7238 1241 152 8 89 chrX 22572295 22572532 -140027398 - MER20 DNA MER1_type -1 218 1 479 255 60 46 chrX 22572549 22572765 -140027165 - L1MC5 LINE L1 -742 7219 7001 21 0 0 0 chrX 22572796 22572817 -140027113 + AT_rich Low_complexity Low_complexity 1 21 0 2003 143 27 0 chrX 22572932 22573225 -140026705 - AluSx SINE Alu -10 302 2 1899 204 60 79 chrX 22573324 22573359 -140026571 + L1MC5 LINE L1 6683 6717 -1244 2285 111 0 22 chrX 22573359 22573675 -140026255 - AluSx SINE Alu -3 309 1 1899 204 60 79 chrX 22573675 22574300 -140025630 + L1MC5 LINE L1 6717 7331 -630 204 194 0 60 chrX 22574521 22574588 -140025342 + (CGGGG)n Simple_repeat Simple_repeat 1 63 0 896 296 165 40 chrX 22574762 22575488 -140024442 - L2 LINE L2 -652 2662 1846 330 257 119 18 chrX 22575490 22575599 -140024331 - MIR SINE MIR -93 169 50 456 326 70 5 chrX 22575678 22575865 -140024065 + MIR SINE MIR 59 257 -5 836 242 109 79 chrX 22576400 22576913 -140023017 + L2 LINE L2 2502 3036 -277 2103 107 10 13 chrX 22576929 22577238 -140022692 - AluSc SINE Alu -1 308 1 2151 79 4 0 chrX 22577678 22577964 -140021966 - AluY SINE Alu 0 303 17 1975 113 10 23 chrX 22578818 22579118 -140020812 - AluSg SINE Alu -14 296 1 243 250 0 0 chrX 22581342 22581414 -140018516 + T-rich Low_complexity Low_complexity 1 72 0 714 255 170 75 chrX 22581682 22582449 -140017481 - L2 LINE L2 -5 3308 2449 278 350 184 0 chrX 22583244 22583461 -140016469 + L2 LINE L2 2397 2653 -661 256 293 35 106 chrX 22583701 22583899 -140016031 + L2 LINE L2 2995 3178 -94 288 267 22 18 chrX 22584053 22584343 -140015587 + G-rich Low_complexity Low_complexity 1 291 0 281 253 0 22 chrX 22584358 22584536 -140015394 + G-rich Low_complexity Low_complexity 4 177 0 1824 165 3 13 chrX 22586586 22586901 -140013029 + AluJb SINE Alu 1 312 0 246 353 154 22 chrX 22588573 22588930 -140011000 - L2 LINE L2 -348 2966 2563 3143 215 106 23 chrX 22590383 22591999 -140007931 + L1MD2 LINE L1 4413 6098 -68 848 211 168 29 chrX 22592069 22592278 -140007652 - MER8 DNA MER2_type 0 239 2 487 204 51 0 chrX 22592626 22592724 -140007206 + L1ME1 LINE L1 6046 6148 -18 2470 119 10 135 chrX 22593133 22593628 -140006302 - Tigger2a DNA MER2_type 0 434 2 1853 161 0 0 chrX 22593872 22594163 -140005767 - AluJo SINE Alu -21 291 1 321 287 40 67 chrX 22594260 22594410 -140005520 - L2 LINE L2 0 3313 3168 30 45 0 0 chrX 22594602 22594646 -140005284 + AT_rich Low_complexity Low_complexity 1 44 0 550 345 143 19 chrX 22594741 22595153 -140004777 - L2 LINE L2 -561 2753 2291 1981 114 0 18 chrX 22597648 22597921 -140002009 + AluSx SINE Alu 1 268 -44 606 244 111 32 chrX 22598545 22599080 -140000850 - L1ME LINE L1 -652 5514 4940 1099 205 56 14 chrX 22599124 22599339 -140000591 + MER58A DNA MER1_type 1 224 0 2363 84 0 3 chrX 22599478 22599775 -140000155 + AluSx SINE Alu 1 296 -16 233 182 0 55 chrX 22600571 22600582 -139999348 - MER46A DNA MER2_type -81 155 148 328 118 137 0 chrX 22600582 22600633 -139999297 + MER46B DNA MER2_type 1 58 -303 2483 70 0 0 chrX 22600633 22600935 -139998995 - AluY SINE Alu -9 302 1 23 33 0 0 chrX 22602130 22602160 -139997770 + GC_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chrX 22602428 22602454 -139997476 + GC_rich Low_complexity Low_complexity 1 26 0 5136 107 36 6 chrX 22602552 22602923 -139997007 + L1PA16 LINE L1 5407 5765 -401 396 0 0 0 chrX 22602923 22602967 -139996963 + (CA)n Simple_repeat Simple_repeat 2 45 0 5136 107 36 6 chrX 22602967 22603321 -139996609 + L1PA16 LINE L1 5765 6154 -12 194 301 60 0 chrX 22603520 22603603 -139996327 + L2 LINE L2 2566 2653 -661 457 291 47 20 chrX 22604114 22604262 -139995668 + MIR SINE MIR 41 192 -70 21 36 0 0 chrX 22605312 22605340 -139994590 + AT_rich Low_complexity Low_complexity 1 28 0 643 278 40 10 chrX 22606843 22607041 -139992889 - Tigger8 DNA MER2_type -48 618 415 288 328 52 9 chrX 22607162 22607278 -139992652 - Tigger8 DNA MER2_type -462 204 84 2166 105 0 10 chrX 22607278 22607572 -139992358 - AluSx SINE Alu -13 299 9 2342 103 0 0 chrX 22608206 22608507 -139991423 - AluSq SINE Alu -12 301 1 2193 97 24 0 chrX 22608536 22608825 -139991105 - AluSx SINE Alu -16 296 1 2144 103 3 27 chrX 22608838 22609139 -139990791 - AluSx SINE Alu -17 295 2 354 23 0 0 chrX 22609547 22609590 -139990340 + (T)n Simple_repeat Simple_repeat 1 43 0 322 177 39 50 chrX 22609590 22609771 -139990159 + (GTGTG)n Simple_repeat Simple_repeat 2 180 0 28 68 0 0 chrX 22609881 22609925 -139990005 + GC_rich Low_complexity Low_complexity 1 44 0 486 0 0 0 chrX 22611110 22611164 -139988766 + (T)n Simple_repeat Simple_repeat 1 54 0 218 284 0 0 chrX 22611238 22611305 -139988625 + MIR SINE MIR 110 176 -86 * 234 355 9 28 chrX 22611302 22611409 -139988521 - L2 LINE L2 0 3313 3209 1095 278 48 16 chrX 22611693 22612064 -139987866 + L1MC4a LINE L1 5548 5930 -1878 622 289 105 15 chrX 22613187 22613512 -139986418 - MLT1L LTR MaLR -118 497 144 288 170 19 0 chrX 22613582 22613635 -139986295 + MER5B DNA MER1_type 125 178 0 409 274 149 25 chrX 22614007 22614208 -139985722 + MIR SINE MIR 6 231 -31 23 78 0 0 chrX 22614884 22614935 -139984995 + GC_rich Low_complexity Low_complexity 1 51 0 445 369 0 0 chrX 22615297 22615476 -139984454 + G-rich Low_complexity Low_complexity 1 179 0 261 313 0 0 chrX 22615501 22615648 -139984282 + G-rich Low_complexity Low_complexity 1 147 0 238 178 0 0 chrX 22615668 22615713 -139984217 + G-rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 22616142 22616163 -139983767 + AT_rich Low_complexity Low_complexity 1 21 0 1315 247 80 4 chrX 22617804 22618250 -139981680 - L1ME LINE L1 -463 5707 5227 2297 110 75 0 chrX 22618250 22618585 -139981345 - MER46B DNA MER2_type 0 236 2 1315 247 80 4 chrX 22618585 22618619 -139981311 - L1ME LINE L1 -943 5227 5197 319 172 17 17 chrX 22618691 22618749 -139981181 - L1ME2 LINE L1 -110 6054 5997 259 246 53 0 chrX 22619687 22619744 -139980186 - L2 LINE L2 -4 3268 3209 192 276 152 62 chrX 22620144 22620289 -139979641 - MIR SINE MIR -36 226 69 194 313 157 0 chrX 22620987 22621070 -139978860 + L3 LINE CR1 1179 1274 -303 257 317 48 0 chrX 22621121 22621225 -139978705 + L3 LINE CR1 1277 1385 -192 2445 170 57 2 chrX 22621260 22621678 -139978252 + L1MB5 LINE L1 5734 6174 0 687 126 0 0 chrX 22622657 22622752 -139977178 - L1PA16 LINE L1 -11 6155 6061 318 282 0 35 chrX 22623322 22623407 -139976523 + L2 LINE L2 3227 3308 -5 249 325 49 8 chrX 22623436 22623559 -139976371 - MARNA DNA Mariner -60 526 399 376 302 9 22 chrX 22623869 22624093 -139975837 + C-rich Low_complexity Low_complexity 1 221 0 33 66 0 0 chrX 22624228 22624289 -139975641 + GC_rich Low_complexity Low_complexity 1 61 0 1964 107 18 77 chrX 22624782 22625108 -139974822 - AluJo SINE Alu -5 307 1 5058 85 25 9 chrX 22625307 22625998 -139973932 + L1PB1 LINE L1 5450 6151 0 24 77 0 0 chrX 22626286 22626338 -139973592 + AT_rich Low_complexity Low_complexity 1 52 0 231 314 88 29 chrX 22626908 22627010 -139972920 + L2 LINE L2 3149 3256 -16 21 71 0 0 chrX 22627144 22627186 -139972744 + AT_rich Low_complexity Low_complexity 1 42 0 1960 143 7 0 chrX 22627194 22627487 -139972443 + AluSx SINE Alu 1 295 -17 2191 122 0 0 chrX 22628596 22628891 -139971039 + AluSx SINE Alu 1 295 -17 3206 203 94 75 chrX 22628893 22629094 -139970836 - L1MC5 LINE L1 -31 7930 7734 1274 155 9 27 chrX 22629094 22629313 -139970617 - MER20 DNA MER1_type -2 217 3 3206 203 94 75 chrX 22629313 22630305 -139969625 - L1MC5 LINE L1 -227 7734 6715 2409 106 0 0 chrX 22630305 22630617 -139969313 + AluSx SINE Alu 1 312 0 238 352 89 22 chrX 22633026 22633205 -139966725 - L3 LINE CR1 -151 1426 1236 634 269 134 9 chrX 22633598 22633814 -139966116 + MIR SINE MIR 3 245 -17 334 303 39 53 chrX 22634079 22634287 -139965643 - L3 LINE CR1 -552 1025 821 1432 194 103 66 chrX 22634300 22634635 -139965295 - MLT1C LTR MaLR -24 443 87 1818 177 43 0 chrX 22634635 22634934 -139964996 - AluJb SINE Alu 0 312 1 1432 194 103 66 chrX 22634934 22635025 -139964905 - MLT1C LTR MaLR -380 87 1 489 275 57 104 chrX 22635025 22635408 -139964522 - MLT1J LTR MaLR -7 504 140 451 269 128 53 chrX 22635482 22635764 -139964166 - L3 LINE CR1 -747 830 528 962 160 99 84 chrX 22635976 22636189 -139963741 + MER20 DNA MER1_type 4 219 0 1317 72 21 204 chrX 22636198 22636477 -139963453 - MER30 DNA MER1_type -2 228 1 41 21 0 0 chrX 22636842 22636890 -139963040 + GC_rich Low_complexity Low_complexity 1 48 0 31 58 0 0 chrX 22637741 22637793 -139962137 + GC_rich Low_complexity Low_complexity 1 52 0 383 268 52 21 chrX 22638137 22638234 -139961696 - L2 LINE L2 -22 3291 3192 257 245 116 54 chrX 22638320 22638467 -139961463 - L2 LINE L2 -133 3180 3025 388 301 213 16 chrX 22638494 22638743 -139961187 - L2 LINE L2 -804 2510 2213 1085 231 0 22 chrX 22638977 22639206 -139960724 + MER58A DNA MER1_type 1 224 0 1045 179 9 50 chrX 22639221 22639439 -139960491 + MER3 DNA MER1_type 1 209 0 302 333 101 0 chrX 22639541 22639679 -139960251 - MIR SINE MIR -10 252 101 24 0 0 0 chrX 22639922 22639946 -139959984 + AT_rich Low_complexity Low_complexity 1 24 0 2259 117 0 0 chrX 22642740 22643039 -139956891 - AluSg SINE Alu -11 299 1 2025 139 3 3 chrX 22644268 22644569 -139955361 - AluSg SINE Alu -9 301 1 305 299 94 34 chrX 22644595 22644946 -139954984 - L1ME LINE L1 -349 5772 5401 944 102 157 0 chrX 22645330 22645496 -139954434 + MER46A DNA MER2_type 45 236 0 2003 95 88 3 chrX 22646266 22646551 -139953379 - AluY SINE Alu -2 309 1 188 353 25 17 chrX 22646811 22646930 -139953000 + L2 LINE L2 2835 2954 -318 2174 126 39 13 chrX 22646965 22647295 -139952635 + MLT2D LTR ERVL 1 355 -42 429 36 0 0 chrX 22647295 22647350 -139952580 + (CA)n Simple_repeat Simple_repeat 1 55 0 2174 126 39 13 chrX 22647350 22647386 -139952544 + MLT2D LTR ERVL 355 389 -8 703 236 40 53 chrX 22647389 22647614 -139952316 + MIR SINE MIR 41 262 0 208 255 0 0 chrX 22647821 22647868 -139952062 + L2 LINE L2 3255 3301 -12 1965 143 10 0 chrX 22649208 22649502 -139950428 - AluJb SINE Alu -15 297 1 831 167 19 19 chrX 22651513 22651669 -139948261 - MER5A DNA MER1_type -33 156 1 214 213 0 21 chrX 22651840 22651887 -139948043 + T-rich Low_complexity Low_complexity 3 48 0 791 181 78 6 chrX 22652131 22652297 -139947633 - MER5A DNA MER1_type -6 183 6 424 219 0 12 chrX 22652297 22652379 -139947551 - MER5B DNA MER1_type -93 85 5 321 278 46 19 chrX 22652827 22652935 -139946995 - MIR3 SINE MIR -17 191 81 901 224 31 9 chrX 22652978 22653201 -139946729 + MER33 DNA MER1_type 1 228 -96 479 157 281 0 chrX 22653215 22653304 -139946626 - FLAM_C SINE Alu -15 118 5 369 267 96 43 chrX 22653361 22653548 -139946382 - L1MC4a LINE L1 -1884 5924 5728 220 242 11 11 chrX 22653782 22653873 -139946057 + C-rich Low_complexity Low_complexity 1 91 0 2111 101 35 0 chrX 22654355 22654642 -139945288 + AluY SINE Alu 1 297 -14 32 0 0 0 chrX 22655049 22655081 -139944849 + AT_rich Low_complexity Low_complexity 1 32 0 35 0 0 22 chrX 22655715 22655731 -139944199 + AT_rich Low_complexity Low_complexity 1 16 -29 1605 186 3 14 chrX 22655731 22656027 -139943903 + AluJb SINE Alu 1 293 -19 35 0 0 22 chrX 22656027 22656056 -139943874 + AT_rich Low_complexity Low_complexity 16 45 0 960 150 14 29 chrX 22656861 22657068 -139942862 + L1P LINE L1 5175 5378 -768 2152 276 106 34 chrX 22659296 22660394 -139939536 - L2 LINE L2 -90 3223 2034 235 173 19 58 chrX 22660636 22660688 -139939242 + LTR33A LTR ERVL 335 384 -139 220 269 0 54 chrX 22660798 22660891 -139939039 + C-rich Low_complexity Low_complexity 1 88 0 2259 76 3 17 chrX 22663360 22663648 -139936282 + AluSx SINE Alu 3 286 -26 3535 178 103 24 chrX 22663657 22664421 -139935509 + Charlie1 DNA MER1_type 1492 2316 -445 393 209 23 12 chrX 22664414 22664500 -139935430 + Charlie1 DNA MER1_type 2675 2761 0 * 2394 91 3 0 chrX 22665098 22665395 -139934535 + AluSp SINE Alu 1 298 -15 610 271 113 0 chrX 22669855 22670032 -139929898 + MIR SINE MIR 37 233 -29 2066 89 48 0 chrX 22670172 22670442 -139929488 + AluSq SINE Alu 15 297 -16 226 184 0 79 chrX 22670906 22670982 -139928948 - L1MB5 LINE L1 -135 6039 5970 251 222 37 19 chrX 22671072 22671180 -139928750 + (CCGCG)n Simple_repeat Simple_repeat 2 111 0 220 154 39 0 chrX 22671260 22671312 -139928618 + (CGGG)n Simple_repeat Simple_repeat 1 54 0 27 29 0 0 chrX 22671338 22671372 -139928558 + GC_rich Low_complexity Low_complexity 1 34 0 42 77 0 0 chrX 22672843 22672934 -139926996 + GC_rich Low_complexity Low_complexity 1 91 0 276 284 43 25 chrX 22672952 22673114 -139926816 + (CCCCG)n Simple_repeat Simple_repeat 1 165 0 29 28 0 0 chrX 22673161 22673197 -139926733 + GC_rich Low_complexity Low_complexity 1 36 0 493 183 229 0 chrX 22675523 22675654 -139924276 + L1ME4a LINE L1 5955 6115 -6 30 59 0 0 chrX 22675821 22675872 -139924058 + AT_rich Low_complexity Low_complexity 1 51 0 290 243 21 36 chrX 22676750 22676890 -139923040 + (CCCG)n Simple_repeat Simple_repeat 2 139 0 247 333 30 15 chrX 22676923 22677055 -139922875 + C-rich Low_complexity Low_complexity 2 135 0 186 71 0 0 chrX 22680116 22680144 -139919786 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 668 201 90 5 chrX 22681583 22681772 -139918158 - AluSg1 SINE Alu -102 207 3 419 221 67 0 chrX 22682063 22682167 -139917763 - MIR SINE MIR -69 193 83 349 151 27 41 chrX 22682301 22682374 -139917556 + L1MB2 LINE L1 6072 6143 -28 1201 158 0 0 chrX 22682380 22682564 -139917366 + AluSg/x SINE Alu 129 312 0 424 214 45 11 chrX 22682743 22682832 -139917098 + MER58 DNA MER1_type 9 100 -241 1238 210 0 37 chrX 22685461 22685761 -139914169 + AluSx SINE Alu 3 291 -11 1072 184 4 128 chrX 22685953 22686203 -139913727 + MER20 DNA MER1_type 1 219 0 319 192 69 115 chrX 22686520 22686650 -139913280 - MIR3 SINE MIR -18 190 67 183 42 0 0 chrX 22686688 22686712 -139913218 + (A)n Simple_repeat Simple_repeat 1 24 0 2243 131 35 26 chrX 22686996 22687423 -139912507 + L1 LINE L1 4100 4530 -1616 370 98 0 0 chrX 22688536 22688587 -139911343 + L1MB2 LINE L1 6105 6155 -16 514 371 0 17 chrX 22689809 22690153 -139909777 + C-rich Low_complexity Low_complexity 1 338 0 286 195 158 0 chrX 22692016 22692098 -139907832 + MIR3 SINE MIR 108 202 -6 392 165 51 38 chrX 22693822 22693901 -139906029 - L3 LINE CR1 -3 1574 1495 2292 113 0 3 chrX 22694128 22694439 -139905491 - AluSg SINE Alu 0 310 1 235 311 98 23 chrX 22694580 22694712 -139905218 - MIR3 SINE MIR -9 199 58 839 260 65 0 chrX 22694718 22694949 -139904981 - MIR SINE MIR -1 261 16 364 179 0 39 chrX 22694957 22695035 -139904895 - MER116 DNA Mariner -3 77 3 1586 148 30 4 chrX 22695101 22695372 -139904558 - L1 LINE L1 -2338 3808 3531 248 279 23 23 chrX 22695383 22695469 -139904461 - L1M4 LINE L1 -2019 4127 4042 360 268 94 89 chrX 22696170 22696405 -139903525 + MIR SINE MIR 20 255 -7 2235 96 0 0 chrX 22697010 22697333 -139902597 + AluSx SINE Alu 1 323 0 1129 157 91 5 chrX 22700245 22700477 -139899453 - L1MB3 LINE L1 -11 6172 5922 23 68 0 0 chrX 22701333 22701377 -139898553 + AT_rich Low_complexity Low_complexity 1 44 0 2859 16 0 0 chrX 22701522 22701837 -139898093 + AluYb8 SINE Alu 1 315 -3 406 123 27 0 chrX 22703484 22703557 -139896373 - MER58 DNA MER1_type -2222 198 124 1630 176 0 58 chrX 22705394 22705707 -139894223 + AluJb SINE Alu 1 295 -17 2014 136 3 7 chrX 22706300 22706610 -139893320 + AluSx SINE Alu 1 309 -3 1929 166 40 16 chrX 22707243 22707623 -139892307 - L1MB8 LINE L1 -1 6177 5789 289 70 116 0 chrX 22708100 22708143 -139891787 - L3 LINE CR1 -1 1576 1529 2235 92 3 0 chrX 22708789 22709073 -139890857 - AluSp SINE Alu -6 307 23 339 287 65 28 chrX 22710702 22710810 -139889120 + L2 LINE L2 3157 3268 -4 5539 174 82 27 chrX 22711286 22711565 -139888365 + Charlie1a DNA MER1_type 1 263 -2498 3858 52 0 2 chrX 22711565 22712022 -139887908 + L1PA8 LINE L1 5717 6172 0 5539 174 82 27 chrX 22712022 22712941 -139886989 + Charlie1a DNA MER1_type 263 1265 -190 2461 77 0 0 chrX 22713419 22713718 -139886212 - AluY SINE Alu -12 299 1 1563 120 50 35 chrX 22716091 22716349 -139883581 - AluJb SINE Alu -46 266 5 1967 105 3 72 chrX 22716362 22716694 -139883236 - AluSc SINE Alu 0 309 1 180 125 0 0 chrX 22716887 22716919 -139883011 + (CATA)n Simple_repeat Simple_repeat 2 33 0 22 56 0 0 chrX 22718079 22718115 -139881815 + AT_rich Low_complexity Low_complexity 1 36 0 2245 108 7 0 chrX 22718640 22718945 -139880985 + AluSx SINE Alu 1 307 -5 504 290 137 18 chrX 22720910 22721355 -139878575 - L1ME4a LINE L1 -239 5882 5385 331 257 26 35 chrX 22721887 22722000 -139877930 - L1MC5 LINE L1 -36 7925 7814 2325 100 3 3 chrX 22722303 22722613 -139877317 + AluSg SINE Alu 1 310 0 189 0 0 0 chrX 22722911 22722932 -139876998 + (T)n Simple_repeat Simple_repeat 1 21 0 46 109 0 11 chrX 22724760 22725078 -139874852 + GC_rich Low_complexity Low_complexity 1 272 0 22 88 0 0 chrX 22725185 22725242 -139874688 + GC_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chrX 22727469 22727519 -139872411 + AT_rich Low_complexity Low_complexity 1 50 0 263 257 0 73 chrX 22728320 22728456 -139871474 + GA-rich Low_complexity Low_complexity 4 129 0 1107 155 45 53 chrX 22730491 22730772 -139869158 - L1ME1 LINE L1 -235 5931 5650 183 42 0 0 chrX 22731731 22731755 -139868175 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chrX 22731765 22731797 -139868133 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chrX 22733045 22733085 -139866845 + AT_rich Low_complexity Low_complexity 1 40 0 214 271 10 42 chrX 22733467 22733563 -139866367 + (CGGGG)n Simple_repeat Simple_repeat 1 93 0 523 335 0 0 chrX 22733657 22733827 -139866103 + G-rich Low_complexity Low_complexity 1 170 0 23 0 0 0 chrX 22733838 22733861 -139866069 + GC_rich Low_complexity Low_complexity 1 23 0 647 47 23 0 chrX 22734459 22734545 -139865385 - AluSc SINE Alu -4 305 218 1483 91 0 5 chrX 22734545 22734731 -139865199 - AluSc SINE Alu -124 185 1 2312 99 0 0 chrX 22734733 22735027 -139864903 - AluSx SINE Alu -18 294 1 439 296 46 13 chrX 22735234 22735386 -139864544 + MER103 DNA DNA 2 158 -8 1014 173 0 0 chrX 22735555 22735705 -139864225 - FAM SINE Alu -23 162 13 26 0 0 0 chrX 22735711 22735737 -139864193 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chrX 22737392 22737420 -139862510 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 22738802 22738823 -139861107 + AT_rich Low_complexity Low_complexity 1 21 0 250 358 0 0 chrX 22739327 22739464 -139860466 + G-rich Low_complexity Low_complexity 1 137 0 25 0 0 0 chrX 22739464 22739489 -139860441 + GC_rich Low_complexity Low_complexity 1 25 0 1227 118 65 0 chrX 22739661 22739847 -139860083 + AluSg/x SINE Alu 108 305 -5 1249 108 72 5 chrX 22739933 22740128 -139859802 + MER3 DNA MER1_type 1 208 -1 321 68 0 0 chrX 22741478 22741522 -139858408 + (TA)n Simple_repeat Simple_repeat 1 44 0 200 229 12 48 chrX 22742500 22742583 -139857347 + CT-rich Low_complexity Low_complexity 2 81 0 222 242 30 15 chrX 22743069 22743135 -139856795 - MIR SINE MIR 0 262 196 22 70 0 0 chrX 22743465 22743508 -139856422 + GC_rich Low_complexity Low_complexity 1 43 0 263 241 0 29 chrX 22743541 22743678 -139856252 + C-rich Low_complexity Low_complexity 1 133 0 186 297 0 0 chrX 22743837 22743948 -139855982 + C-rich Low_complexity Low_complexity 1 111 0 234 200 20 0 chrX 22744127 22744177 -139855753 - L1M4b LINE L1 -6378 481 431 497 239 26 9 chrX 22744246 22744359 -139855571 - MIR SINE MIR -106 156 42 288 248 88 0 chrX 22746198 22746311 -139853619 - MIR SINE MIR -71 191 69 272 219 55 41 chrX 22746524 22746597 -139853333 - L2 LINE L2 -30 3242 3169 2558 143 30 23 chrX 22747466 22748032 -139851898 + L1MA9 LINE L1 5645 6334 0 243 277 13 65 chrX 22748802 22748957 -139850973 + G-rich Low_complexity Low_complexity 4 150 0 280 242 31 31 chrX 22748968 22749129 -139850801 + (CGGG)n Simple_repeat Simple_repeat 3 163 0 21 36 0 0 chrX 22749129 22749157 -139850773 + GC_rich Low_complexity Low_complexity 1 28 0 982 174 42 0 chrX 22749258 22749448 -139850482 + MER3 DNA MER1_type 12 209 0 276 246 0 0 chrX 22750371 22750436 -139849494 - L2 LINE L2 -19 3253 3189 296 300 0 0 chrX 22753339 22753409 -139846521 + MIR SINE MIR 82 151 -57 30 45 0 0 chrX 22753920 22753964 -139845966 + GC_rich Low_complexity Low_complexity 1 44 0 563 144 125 25 chrX 22755030 22755190 -139844740 - Charlie1 DNA MER1_type 0 2761 2586 891 92 0 0 chrX 22756209 22756329 -139843601 + (C)n Simple_repeat Simple_repeat 1 120 0 28 71 0 0 chrX 22756387 22756443 -139843487 + GC_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chrX 22756876 22756900 -139843030 + AT_rich Low_complexity Low_complexity 1 24 0 862 193 0 28 chrX 22756914 22757090 -139842840 - AluJo SINE Alu -31 281 111 480 308 12 15 chrX 22757207 22757438 -139842492 + C-rich Low_complexity Low_complexity 1 230 0 276 222 19 80 chrX 22757489 22757651 -139842279 + C-rich Low_complexity Low_complexity 3 154 0 2239 112 0 0 chrX 22808673 22808969 -139790961 - AluSx SINE Alu -16 296 1 463 296 7 33 chrX 22809764 22809916 -139790014 - MER5B DNA MER1_type -29 149 2 187 246 72 14 chrX 22811095 22811164 -139788766 - L2 LINE L2 -63 3209 3137 1715 131 95 93 chrX 22811376 22811502 -139788428 - MLT1B LTR MaLR 0 390 266 2298 100 0 0 chrX 22811502 22811791 -139788139 - AluSg SINE Alu -21 289 1 1715 131 95 93 chrX 22811791 22812052 -139787878 - MLT1B LTR MaLR -124 266 2 255 134 0 75 chrX 22812400 22812467 -139787463 + (TTTTC)n Simple_repeat Simple_repeat 3 64 0 2463 70 0 0 chrX 22813303 22813601 -139786329 - AluY SINE Alu -13 298 1 23 0 0 0 chrX 22813718 22813741 -139786189 + AT_rich Low_complexity Low_complexity 1 23 0 350 227 140 27 chrX 22814093 22814243 -139785687 + L1ME4a LINE L1 5954 6120 -1 591 229 153 0 chrX 22814397 22814554 -139785376 + MER5A DNA MER1_type 9 189 0 2206 101 0 7 chrX 22814902 22815199 -139784731 + AluSx SINE Alu 1 295 -17 209 167 42 0 chrX 22817956 22818004 -139781926 + T-rich Low_complexity Low_complexity 4 53 0 205 135 54 0 chrX 22818122 22818159 -139781771 + (CTTTG)n Simple_repeat Simple_repeat 5 43 0 197 300 33 0 chrX 22819200 22819260 -139780670 - L2 LINE L2 -219 3053 2992 2035 110 0 21 chrX 22819473 22819764 -139780166 - AluJb SINE Alu -24 288 4 537 185 124 162 chrX 22821749 22822014 -139777916 + MIR SINE MIR 2 256 -6 296 350 0 0 chrX 22822116 22822196 -139777734 + L2 LINE L2 3186 3265 -7 387 221 10 29 chrX 22822377 22822481 -139777449 - MER5B DNA MER1_type -76 102 1 2063 152 0 9 chrX 22824026 22824341 -139775589 - AluJb SINE Alu 0 312 1 217 303 34 76 chrX 22824705 22824824 -139775106 + MIR SINE MIR 41 154 -108 908 299 34 6 chrX 22825943 22826267 -139773663 + MER102b DNA MER1_type 1 333 -8 2415 87 3 0 chrX 22826493 22826802 -139773128 - AluSg SINE Alu 0 310 1 244 356 25 19 chrX 22826809 22826969 -139772961 - MIR SINE MIR -42 220 60 1199 163 5 10 chrX 22827002 22827211 -139772719 + MER3 DNA MER1_type 2 209 0 251 276 11 23 chrX 22827730 22827817 -139772113 - HsTC2 DNA Tc2 -1812 86 1 279 194 0 28 chrX 22828843 22828915 -139771015 + MER116 DNA Mariner 1 70 -10 263 219 122 0 chrX 22829788 22829870 -139770060 - MIR SINE MIR -55 207 116 577 305 190 10 chrX 22830110 22830505 -139769425 - L2 LINE L2 -84 3229 2739 21 36 0 0 chrX 22831043 22831071 -139768859 + AT_rich Low_complexity Low_complexity 1 28 0 196 30 61 0 chrX 22831868 22831901 -139768029 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1737 141 9 53 chrX 22831926 22832245 -139767685 - AluJo SINE Alu -2 310 6 1410 191 38 48 chrX 22832778 22833071 -139766859 + AluJo SINE Alu 1 290 -22 290 123 18 0 chrX 22833080 22833137 -139766793 + (TA)n Simple_repeat Simple_repeat 1 58 0 481 247 13 20 chrX 22833304 22833454 -139766476 - MER103 DNA DNA -3 163 15 249 340 0 0 chrX 22833976 22834073 -139765857 - Charlie8 DNA MER1_type -2236 181 85 470 163 170 7 chrX 22834117 22834252 -139765678 + L1ME4a LINE L1 5501 5657 -513 23 33 0 0 chrX 22834363 22834393 -139765537 + AT_rich Low_complexity Low_complexity 1 30 0 372 246 91 96 chrX 22834530 22834717 -139765213 - L2 LINE L2 -557 2757 2572 371 138 15 0 chrX 22834721 22834786 -139765144 - MER20 DNA MER1_type -5 214 149 208 256 278 36 chrX 22834988 22835211 -139764719 + L2 LINE L2 1695 1971 -1343 331 320 94 17 chrX 22835296 22835530 -139764400 + L1ME4a LINE L1 5764 6015 -106 597 286 88 68 chrX 22835600 22835954 -139763976 + L2 LINE L2 2149 2517 -797 2264 105 0 0 chrX 22835954 22836249 -139763681 + AluSg SINE Alu 1 295 -15 597 286 88 68 chrX 22836249 22836380 -139763550 + L2 LINE L2 2517 2644 -670 816 182 144 52 chrX 22836380 22836677 -139763253 + MER33 DNA MER1_type 1 324 0 308 247 213 33 chrX 22838468 22838618 -139761312 + MER5B DNA MER1_type 2 178 0 21 0 0 0 chrX 22838834 22838855 -139761075 + AT_rich Low_complexity Low_complexity 1 21 0 273 328 112 15 chrX 22838855 22838989 -139760941 - MIR SINE MIR -55 207 61 494 256 134 55 chrX 22839241 22839479 -139760451 - MIR SINE MIR 0 262 6 246 311 33 25 chrX 22841546 22841668 -139758262 - MIR SINE MIR -21 241 119 208 176 94 82 chrX 22843291 22843376 -139756554 - L2 LINE L2 -561 2753 2668 1838 168 30 0 chrX 22844158 22844455 -139755475 + AluJb SINE Alu 1 306 -6 2536 52 0 13 chrX 22845188 22845496 -139754434 + AluY SINE Alu 1 304 -7 2355 88 0 3 chrX 22845697 22845994 -139753936 + AluSg SINE Alu 1 296 -14 2974 110 2 24 chrX 22846412 22846875 -139753055 - L1PA11 LINE L1 0 6174 5722 3206 136 19 3 chrX 22846875 22847462 -139752468 + L1P LINE L1 4789 5384 -762 315 259 54 75 chrX 22847536 22847830 -139752100 - Charlie7 DNA MER1_type -2223 389 102 504 0 0 0 chrX 22848702 22848758 -139751172 + (TTTTA)n Simple_repeat Simple_repeat 1 56 0 2173 88 0 7 chrX 22848758 22849041 -139750889 - AluSq SINE Alu -32 281 1 2104 105 6 37 chrX 22849844 22850167 -139749763 + AluSq SINE Alu 1 313 0 780 151 48 87 chrX 22850937 22851143 -139748787 + MER20 DNA MER1_type 1 198 -21 3562 51 7 2 chrX 22851149 22851600 -139748330 + L1PA8 LINE L1 5719 6171 -1 2310 102 0 0 chrX 22851785 22852080 -139747850 - AluSg SINE Alu -15 295 1 1715 141 48 29 chrX 22852138 22852514 -139747416 - Charlie1b DNA MER1_type -140 383 1 1533 223 53 18 chrX 22852526 22852979 -139746951 + Charlie4a DNA MER1_type 39 507 -1 403 275 88 6 chrX 22853445 22853616 -139746314 - HAL1 LINE L1 0 2507 2323 1979 209 45 45 chrX 22853806 22854410 -139745520 - HAL1 LINE L1 -636 1871 1268 358 230 60 0 chrX 22854491 22854591 -139745339 - HAL1 LINE L1 -1798 709 604 421 271 59 21 chrX 22854711 22854945 -139744985 - HAL1 LINE L1 -2186 321 1 1070 258 16 12 chrX 22855281 22855533 -139744397 - MIR SINE MIR 0 262 10 27 29 0 0 chrX 22859702 22859736 -139740194 + AT_rich Low_complexity Low_complexity 1 34 0 619 168 9 9 chrX 22859925 22860032 -139739898 + L2 LINE L2 3207 3313 0 227 244 60 149 chrX 22860067 22860235 -139739695 + L2 LINE L2 3161 3313 0 2674 26 0 3 chrX 22861425 22861730 -139738200 - AluY SINE Alu -7 304 1 936 197 103 5 chrX 22861950 22862153 -139737777 - MER58A DNA MER1_type 0 224 2 1187 138 153 0 chrX 22862378 22862581 -139737349 + MER46A DNA MER2_type 1 234 -2 2443 81 0 0 chrX 22862660 22862956 -139736974 + AluSp SINE Alu 1 296 -17 404 102 85 0 chrX 22863163 22863222 -139736708 + FRAM SINE Alu 74 137 -39 1120 184 202 4 chrX 22863267 22863495 -139736435 + AluJo SINE Alu 10 282 -30 234 128 0 0 chrX 22863500 22863539 -139736391 + (TA)n Simple_repeat Simple_repeat 1 39 0 1243 272 102 19 chrX 22863690 22864202 -139735728 + MLT1F1 LTR MaLR 3 565 -2 188 277 0 0 chrX 22864255 22864302 -139735628 + L2 LINE L2 3261 3307 -6 2103 119 7 0 chrX 22865456 22865749 -139734181 + AluSx SINE Alu 1 295 -17 1039 146 38 0 chrX 22866200 22866358 -139733572 - AluJb SINE Alu -16 296 133 25 31 0 0 chrX 22866945 22866977 -139732953 + AT_rich Low_complexity Low_complexity 1 32 0 365 233 95 26 chrX 22871410 22871526 -139728404 + MIR SINE MIR 24 147 -115 1256 114 0 0 chrX 22871680 22871856 -139728074 + AluSp SINE Alu 137 312 -1 639 168 8 8 chrX 22873829 22873948 -139725982 + FLAM_A SINE Alu 1 119 -14 382 242 11 27 chrX 22873962 22874074 -139725856 - L1MC4 LINE L1 -1339 6983 1996 215 268 0 0 chrX 22874796 22874852 -139725078 + L2 LINE L2 3172 3227 -86 667 228 97 31 chrX 22875233 22875461 -139724469 - Charlie8 DNA MER1_type -2141 276 34 281 159 16 0 chrX 22876081 22876144 -139723786 + CT-rich Low_complexity Low_complexity 1 64 0 345 24 0 0 chrX 22878682 22878724 -139721206 + (CA)n Simple_repeat Simple_repeat 2 43 0 29 78 0 0 chrX 22879390 22879454 -139720476 + GC_rich Low_complexity Low_complexity 1 64 0 240 105 0 0 chrX 22879890 22879921 -139720009 + (TC)n Simple_repeat Simple_repeat 1 34 -4 229 51 51 0 chrX 22879921 22879960 -139719970 + (CA)n Simple_repeat Simple_repeat 1 41 0 240 105 0 0 chrX 22879960 22879966 -139719964 + (TC)n Simple_repeat Simple_repeat 33 38 0 21 0 0 0 chrX 22880757 22880778 -139719152 + AT_rich Low_complexity Low_complexity 1 21 0 242 54 0 27 chrX 22881032 22881069 -139718861 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chrX 22881403 22881425 -139718505 + GC_rich Low_complexity Low_complexity 1 22 0 252 313 25 0 chrX 22882051 22882131 -139717799 + GA-rich Low_complexity Low_complexity 5 86 0 25 51 0 0 chrX 22882239 22882278 -139717652 + GC_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chrX 22883842 22883862 -139716068 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 222 37 0 0 chrX 22884009 22884036 -139715894 + (CGG)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chrX 22884235 22884270 -139715660 + GC_rich Low_complexity Low_complexity 1 35 0 512 252 60 20 chrX 22884518 22884669 -139715261 + MIR SINE MIR 52 208 -54 201 289 118 0 chrX 22884825 22884901 -139715029 - L2 LINE L2 0 3272 3188 231 36 0 0 chrX 22887403 22887431 -139712499 + (CA)n Simple_repeat Simple_repeat 2 29 0 254 308 0 22 chrX 22887540 22887631 -139712299 + CT-rich Low_complexity Low_complexity 4 92 0 299 253 0 0 chrX 22890001 22890096 -139709834 + CT-rich Low_complexity Low_complexity 2 96 0 36 70 0 0 chrX 22890300 22890371 -139709559 + GC_rich Low_complexity Low_complexity 1 71 0 366 115 0 0 chrX 22890407 22890468 -139709462 + (CCG)n Simple_repeat Simple_repeat 3 63 0 260 228 34 13 chrX 22890727 22890976 -139708954 + CT-rich Low_complexity Low_complexity 1 254 0 218 293 37 12 chrX 22890988 22891070 -139708860 + CT-rich Low_complexity Low_complexity 2 85 0 22 56 0 0 chrX 22891655 22891691 -139708239 + AT_rich Low_complexity Low_complexity 1 36 0 180 77 0 0 chrX 22894259 22894285 -139705645 + (TC)n Simple_repeat Simple_repeat 2 27 0 216 0 0 0 chrX 22895410 22895434 -139704496 + (TA)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chrX 22896336 22896369 -139703561 + AT_rich Low_complexity Low_complexity 1 33 0 291 114 0 0 chrX 22899198 22899242 -139700688 + (A)n Simple_repeat Simple_repeat 1 44 0 542 118 11 0 chrX 22900849 22900942 -139698988 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 2274 112 0 7 chrX 22901940 22902235 -139697695 + AluSx SINE Alu 1 293 -19 643 218 68 77 chrX 22902263 22902379 -139697551 - MIR SINE MIR -34 228 113 515 236 0 0 chrX 22902379 22902489 -139697441 - MER81 DNA DNA -1 113 4 643 218 68 77 chrX 22902489 22902592 -139697338 - MIR SINE MIR -149 113 11 321 299 36 44 chrX 22902605 22902742 -139697188 - MIR3 SINE MIR -67 141 6 665 265 81 11 chrX 22903760 22904032 -139695898 - L1ME LINE L1 -347 5774 5484 2248 65 79 10 chrX 22904210 22904501 -139695429 + AluSq SINE Alu 1 311 -2 360 331 73 0 chrX 22904563 22904714 -139695216 + MIR SINE MIR 1 162 -100 2390 100 0 0 chrX 22904801 22905102 -139694828 - AluSx SINE Alu -11 301 1 398 354 52 13 chrX 22905102 22905308 -139694622 - L1ME LINE L1 -429 5692 5485 207 0 0 0 chrX 22905327 22905350 -139694580 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1899 146 4 4 chrX 22905352 22905632 -139694298 - AluJb SINE Alu -31 281 2 269 264 8 0 chrX 22905637 22905751 -139694179 - L1P5 LINE L1 -717 5437 5321 357 218 47 37 chrX 22905922 22906044 -139693886 + MLT1J LTR MaLR 54 221 -290 2162 88 4 0 chrX 22907485 22907757 -139692173 - AluSg1 SINE Alu -2 307 35 189 0 0 0 chrX 22908236 22908257 -139691673 + (T)n Simple_repeat Simple_repeat 1 21 0 2325 102 0 0 chrX 22908347 22908667 -139691263 - AluSx SINE Alu 0 320 1 21 0 0 0 chrX 22908667 22908688 -139691242 + AT_rich Low_complexity Low_complexity 1 21 0 2512 90 0 0 chrX 22909188 22909499 -139690431 - AluY SINE Alu 0 311 1 26 64 0 0 chrX 22909535 22909582 -139690348 + AT_rich Low_complexity Low_complexity 1 47 0 2362 112 3 0 chrX 22909818 22910130 -139689800 - AluSp SINE Alu 0 313 1 225 0 0 0 chrX 22910957 22910982 -139688948 + (A)n Simple_repeat Simple_repeat 1 25 0 2177 104 0 0 chrX 22910985 22911264 -139688666 + AluSg SINE Alu 1 279 -31 189 0 0 0 chrX 22911301 22911322 -139688608 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 510 268 83 13 chrX 22911729 22911886 -139688044 + MLT1H1 LTR MaLR 26 193 -362 490 176 78 161 chrX 22911972 22912165 -139687765 + MLT1H1 LTR MaLR 379 555 0 1163 271 77 29 chrX 22912165 22912608 -139687322 + MLT1J LTR MaLR 38 501 -10 408 317 83 33 chrX 22912718 22913199 -139686731 - L2 LINE L2 -65 3207 2712 910 292 98 22 chrX 22913386 22913752 -139686178 - MLT1J LTR MaLR -47 464 71 269 208 38 0 chrX 22913806 22913859 -139686071 + MER58 DNA MER1_type 191 245 -96 2328 72 9 56 chrX 22916919 22917240 -139682690 - AluSg SINE Alu -4 306 1 2303 117 104 0 chrX 22917533 22917919 -139682011 - MSTB LTR MaLR 0 426 1 1179 277 106 10 chrX 22918195 22918592 -139681338 + MLT1J2 LTR MaLR 1 435 -15 2401 69 0 3 chrX 22918600 22918914 -139681016 - AluSq SINE Alu 0 313 1 2412 93 3 0 chrX 22918984 22919284 -139680646 - AluSp SINE Alu -12 301 1 2426 94 3 0 chrX 22919553 22919852 -139680078 + AluSx SINE Alu 1 300 -12 713 124 283 0 chrX 22920204 22920349 -139679581 - MER5A DNA MER1_type 0 189 4 610 333 183 18 chrX 22920575 22920807 -139679123 - L2 LINE L2 -276 2996 2803 2366 92 3 0 chrX 22920807 22921101 -139678829 - AluSg SINE Alu -15 295 1 610 333 183 18 chrX 22921101 22921501 -139678429 - L2 LINE L2 -469 2803 2262 317 224 40 0 chrX 22921659 22921735 -139678195 - MER102a DNA MER1_type 0 330 252 2385 96 0 0 chrX 22921919 22922221 -139677709 + AluSx SINE Alu 1 302 -10 2044 135 0 10 chrX 22922354 22922658 -139677272 + AluJb SINE Alu 1 301 -11 213 211 105 0 chrX 22922684 22922741 -139677189 - L2 LINE L2 -1245 2069 2007 2274 110 0 16 chrX 22922953 22923261 -139676669 + AluSx SINE Alu 5 307 -5 278 23 23 0 chrX 22923556 22923599 -139676331 - L1MA6 LINE L1 0 6300 6257 565 208 0 39 chrX 22923972 22924102 -139675828 + MER94 DNA DNA 7 131 -3 722 199 0 0 chrX 22928213 22928359 -139671571 - L1ME3A LINE L1 -5 6165 6020 286 210 0 0 chrX 22928411 22928473 -139671457 - L1M4 LINE L1 -1577 4569 4508 1914 142 48 3 chrX 22928487 22928776 -139671154 - AluJo SINE Alu -10 302 1 191 36 36 0 chrX 22929345 22929373 -139670557 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1648 163 39 18 chrX 22931025 22931190 -139668740 - AluJo SINE Alu -19 293 118 216 0 0 0 chrX 22931190 22931214 -139668716 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1648 163 39 18 chrX 22931214 22931331 -139668599 - AluJo SINE Alu -194 118 5 1118 177 26 35 chrX 22931523 22931749 -139668181 - MER58A DNA MER1_type 0 224 1 2452 72 3 0 chrX 22931959 22932252 -139667678 + AluSp SINE Alu 1 294 -19 2272 110 49 9 chrX 22932398 22932744 -139667186 - THE1B LTR MaLR 0 364 5 309 247 13 0 chrX 22932959 22933036 -139666894 + MER116 DNA Mariner 3 80 0 789 225 60 156 chrX 22933038 22933242 -139666688 - L1MC5 LINE L1 -142 7900 7678 2178 118 3 0 chrX 22933242 22933530 -139666400 - AluSx SINE Alu -23 289 1 789 225 60 156 chrX 22933530 22933974 -139665956 - L1MC5 LINE L1 -364 7678 7258 2396 112 0 6 chrX 22934078 22934392 -139665538 - AluSx SINE Alu 0 312 1 367 321 95 86 chrX 22934398 22934840 -139665090 - L1ME LINE L1 -399 5765 5320 21 36 0 0 chrX 22934875 22934903 -139665027 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chrX 22934987 22935032 -139664898 + AT_rich Low_complexity Low_complexity 1 45 0 2513 87 0 0 chrX 22935032 22935344 -139664586 - AluSx SINE Alu 0 312 1 253 173 13 27 chrX 22935864 22935939 -139663991 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 888 263 0 32 chrX 22936723 22936970 -139662960 + MIR SINE MIR 20 258 -4 207 283 0 0 chrX 22937363 22937402 -139662528 + CT-rich Low_complexity Low_complexity 3 44 -11 2139 143 26 0 chrX 22937402 22937710 -139662220 - 7SLRNA srpRNA srpRNA -4 316 1 207 283 0 0 chrX 22937710 22937723 -139662207 + CT-rich Low_complexity Low_complexity 43 55 0 425 227 172 20 chrX 22937733 22937931 -139661999 - L1MC5 LINE L1 -52 7909 7682 * 1469 157 31 5 chrX 22937911 22938231 -139661699 - L1MB3 LINE L1 0 6184 5855 193 292 89 89 chrX 22938349 22938517 -139661413 + L3 LINE CR1 1401 1568 -9 281 215 123 0 chrX 22938600 22938665 -139661265 - L3 LINE CR1 -1 1576 1504 2148 106 0 3 chrX 22938962 22939244 -139660686 - AluSx SINE Alu -31 281 1 633 81 0 30 chrX 22939244 22939343 -139660587 - L1MB4 LINE L1 -309 5871 5776 2999 174 56 108 chrX 22939350 22939398 -139660532 - L1MC5 LINE L1 -262 7699 7650 2039 136 48 0 chrX 22939398 22939693 -139660237 - AluSx SINE Alu -3 309 1 2999 174 56 108 chrX 22939693 22939751 -139660179 - L1MC5 LINE L1 -311 7650 7591 2487 82 0 0 chrX 22939751 22940056 -139659874 + AluSx SINE Alu 1 305 -7 2999 174 56 108 chrX 22940056 22940130 -139659800 - L1MC5 LINE L1 -370 7591 7515 4167 96 30 3 chrX 22940130 22940736 -139659194 + L1PA16 LINE L1 5545 6166 0 2999 174 56 108 chrX 22940736 22941647 -139658283 - L1MC5 LINE L1 -446 7515 6663 256 210 0 0 chrX 22941671 22941733 -139658197 - L1ME4a LINE L1 -2 6119 6058 706 218 116 104 chrX 22942312 22942725 -139657205 - Charlie2 DNA MER1_type -2 2860 2443 593 195 8 49 chrX 22992782 22992821 -139607109 + MER2 DNA MER2_type 228 267 -78 2287 104 0 13 chrX 22992821 22993130 -139606800 - AluSc SINE Alu -4 305 1 593 195 8 49 chrX 22993130 22993213 -139606717 + MER2 DNA MER2_type 267 345 0 191 227 134 101 chrX 22993745 22993864 -139606066 + MIR SINE MIR 70 192 -70 259 282 13 0 chrX 22994659 22994737 -139605193 - L1MB3 LINE L1 -332 5789 5711 183 80 0 0 chrX 22995531 22995556 -139604374 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chrX 22997756 22997777 -139602153 + AT_rich Low_complexity Low_complexity 1 21 0 1907 71 0 13 chrX 22999000 22999239 -139600691 - AluSc SINE Alu -73 236 1 246 226 0 0 chrX 22999948 23000010 -139599920 + L1ME4a LINE L1 6059 6120 -1 416 290 71 66 chrX 23000590 23000773 -139599157 + MIR3 SINE MIR 1 154 -54 21 36 0 0 chrX 23000790 23000818 -139599112 + AT_rich Low_complexity Low_complexity 1 28 0 1406 150 4 12 chrX 23001007 23001254 -139598676 + L1PA13 LINE L1 5900 6144 -19 27 0 0 0 chrX 23001255 23001282 -139598648 + AT_rich Low_complexity Low_complexity 1 27 0 2122 141 77 5 chrX 23001841 23002230 -139597700 + L1MB4 LINE L1 5764 6180 0 1732 154 117 43 chrX 23002366 23002653 -139597277 - MSTD LTR MaLR 0 396 131 1961 136 3 7 chrX 23002653 23002955 -139596975 + AluSg SINE Alu 1 301 -9 2270 88 3 3 chrX 23002955 23003250 -139596680 + AluSq SINE Alu 1 295 -18 1732 154 117 43 chrX 23003250 23003330 -139596600 - MSTD LTR MaLR -264 132 1 1471 144 12 19 chrX 23003457 23003713 -139596217 + MER2 DNA MER2_type 1 254 -91 1949 238 19 68 chrX 23003817 23004489 -139595441 - L2 LINE L2 -1906 1408 770 210 143 0 0 chrX 23004499 23004534 -139595396 + L2 LINE L2 3263 3297 -16 437 291 80 0 chrX 23004741 23004892 -139595038 - MER117 DNA MER1_type -34 163 1 665 249 8 73 chrX 23005991 23006236 -139593694 + MIR SINE MIR 29 257 -5 4059 139 29 7 chrX 23007181 23008202 -139591728 - L1M2 LINE L1 -628 5684 4641 1342 180 6 67 chrX 23008210 23008325 -139591605 - L1M2 LINE L1 -2106 4040 3920 2342 99 16 0 chrX 23008325 23008628 -139591302 + AluSx SINE Alu 3 310 -2 1342 180 6 67 chrX 23008628 23008840 -139591090 - L1M2 LINE L1 -2226 3920 3733 2261 109 0 0 chrX 23008956 23009260 -139590670 - AluSc SINE Alu -5 304 1 21 0 0 0 chrX 23009359 23009380 -139590550 + AT_rich Low_complexity Low_complexity 1 21 0 239 242 66 11 chrX 23009691 23009782 -139590148 + L1ME4a LINE L1 5957 6052 -69 182 150 25 0 chrX 23009788 23009828 -139590102 + CT-rich Low_complexity Low_complexity 2 42 0 2223 208 35 4 chrX 23010005 23010457 -139589473 - MLT1C LTR MaLR -1 466 1 6767 89 27 2 chrX 23010493 23011471 -139588459 - L1MA2 LINE L1 0 6304 5303 32 57 0 0 chrX 23011710 23011763 -139588167 + AT_rich Low_complexity Low_complexity 1 53 0 7642 24 0 0 chrX 23012213 23013606 -139586324 - L1PA4 LINE L1 -3 6152 4761 895 181 58 37 chrX 23014900 23015143 -139584787 + L1MC4a LINE L1 5668 5915 -1893 1317 191 61 98 chrX 23015145 23015680 -139584250 - MER39 LTR ERV1 -3 704 5 21 0 0 0 chrX 23015695 23015716 -139584214 + AT_rich Low_complexity Low_complexity 1 21 0 261 376 165 0 chrX 23015864 23016130 -139583800 - L2 LINE L2 -556 2758 2449 248 164 0 73 chrX 23016212 23016267 -139583663 + L2 LINE L2 3222 3272 0 21 0 0 0 chrX 23017510 23017531 -139582399 + AT_rich Low_complexity Low_complexity 1 21 0 392 182 0 0 chrX 23017688 23017754 -139582176 - MLT1H LTR MaLR -3 546 481 261 0 0 0 chrX 23017825 23017854 -139582076 + (TG)n Simple_repeat Simple_repeat 1 29 0 538 258 23 0 chrX 23018100 23018228 -139581702 - MIR SINE MIR -92 170 40 251 191 15 29 chrX 23018264 23018332 -139581598 + MLT1H LTR MaLR 86 152 -397 375 261 102 63 chrX 23018340 23018661 -139581269 + MLT1H LTR MaLR 95 547 -2 2239 120 0 0 chrX 23018759 23019068 -139580862 + AluSx SINE Alu 1 309 -3 242 282 45 27 chrX 23019823 23019933 -139579997 + MER103 DNA DNA 54 165 -1 451 252 108 29 chrX 23020176 23020315 -139579615 + MIR SINE MIR 71 220 -42 408 316 151 5 chrX 23020617 23020829 -139579101 + MIR SINE MIR 12 254 -8 483 253 108 60 chrX 23022164 23022496 -139577434 + L1ME4a LINE L1 5663 6010 -111 25 0 0 0 chrX 23022513 23022538 -139577392 + AT_rich Low_complexity Low_complexity 1 25 0 5717 76 47 7 chrX 23022539 23023350 -139576580 - L1MA1 LINE L1 0 6302 5460 2423 89 23 0 chrX 23023350 23023692 -139576238 - L1PA10 LINE L1 -4 6164 5810 2680 129 4 4 chrX 23023692 23024300 -139575630 - L1MA1 LINE L1 -743 5403 4868 1659 116 9 0 chrX 23024300 23024524 -139575406 - AluSg/x SINE Alu -17 293 68 398 313 115 14 chrX 23024826 23025104 -139574826 - MLT1L LTR MaLR 0 615 310 303 146 0 0 chrX 23025104 23025159 -139574771 + (GA)n Simple_repeat Simple_repeat 2 56 0 254 279 62 62 chrX 23025603 23025811 -139574119 - MLT1J1 LTR MaLR 0 446 239 562 287 20 39 chrX 23025965 23026219 -139573711 - L2 LINE L2 -854 2460 2212 2349 93 0 19 chrX 23026882 23027195 -139572735 + AluSq SINE Alu 1 307 -6 298 361 85 0 chrX 23027316 23027446 -139572484 - L3 LINE CR1 -116 1461 1321 5449 118 7 0 chrX 23027869 23028713 -139571217 - L1PA15 LINE L1 -3 6162 5313 3951 119 2 30 chrX 23028779 23029420 -139570510 - L1PA15 LINE L1 -7 6158 5536 3073 223 56 17 chrX 23029521 23030392 -139569538 - L1MDa LINE L1 -2598 3942 3024 1361 163 17 4 chrX 23030392 23030625 -139569305 + MER46A DNA MER2_type 1 236 0 3073 223 56 17 chrX 23030625 23030763 -139569167 - L1MDa LINE L1 -3516 3024 2893 1192 61 0 25 chrX 23030764 23030927 -139569003 - L1PA14 LINE L1 -2 6159 6001 1138 194 166 2 chrX 23030967 23031365 -139568565 - L1MDa LINE L1 -3989 2551 2089 2312 70 7 0 chrX 23031374 23031660 -139568270 - AluSg SINE Alu -22 288 1 2260 111 38 22 chrX 23031688 23032057 -139567873 + THE1C LTR MaLR 1 375 0 2775 80 3 0 chrX 23032068 23032443 -139567487 + THE1C-int LTR MaLR 1142 1517 -63 1555 87 16 29 chrX 23032443 23032685 -139567245 + THE1C LTR MaLR 137 375 0 3708 182 51 53 chrX 23032690 23033769 -139566161 - L1MDa LINE L1 -4472 2068 992 364 296 104 0 chrX 23033879 23034004 -139565926 + L1M4 LINE L1 3375 3512 -2634 2160 94 17 13 chrX 23034087 23034252 -139565678 - AluSc SINE Alu -8 301 133 2497 74 0 0 chrX 23034252 23034563 -139565367 - AluY SINE Alu 0 311 1 2160 94 17 13 chrX 23034563 23034696 -139565234 - AluSc SINE Alu -176 133 2 1921 164 0 3 chrX 23034977 23035270 -139564660 + AluJo SINE Alu 1 292 -20 2165 113 0 3 chrX 23035790 23036083 -139563847 - AluSx SINE Alu -19 293 2 2488 156 58 21 chrX 23036160 23037127 -139562803 + L1MDa LINE L1 1301 2371 -4169 1442 184 51 7 chrX 23037121 23037415 -139562515 + L1MD2 LINE L1 5837 6143 -216 * 396 218 99 35 chrX 23037421 23037563 -139562367 + L1MD2 LINE L1 6199 6349 -10 28 61 0 0 chrX 23038354 23038403 -139561527 + AT_rich Low_complexity Low_complexity 1 49 0 520 218 4 117 chrX 23039379 23039611 -139560319 + MLT1F1 LTR MaLR 1 212 -355 986 177 16 0 chrX 23039619 23039805 -139560125 - MLT1B LTR MaLR 0 390 202 397 295 0 16 chrX 23040096 23040224 -139559706 - LTR16A1 LTR ERVL -4 453 328 1663 171 72 141 chrX 23040224 23040791 -139559139 + MLT1F LTR MaLR 1 528 -14 294 302 142 45 chrX 23040801 23041069 -139558861 - LTR16C LTR ERVL -126 365 72 183 80 0 0 chrX 23041954 23041979 -139557951 + (CG)n Simple_repeat Simple_repeat 1 25 0 * 234 0 0 0 chrX 23041978 23042004 -139557926 + (CA)n Simple_repeat Simple_repeat 1 26 0 1255 246 102 22 chrX 23042021 23042472 -139557458 + LTR33A LTR ERVL 3 489 -34 193 265 0 0 chrX 23042604 23042653 -139557277 - L2 LINE L2 -11 3261 3213 318 239 0 0 chrX 23043113 23043184 -139556746 + MLT1J LTR MaLR 110 180 -331 24 0 0 0 chrX 23043649 23043673 -139556257 + AT_rich Low_complexity Low_complexity 1 24 0 1969 102 99 34 chrX 23044311 23044663 -139555267 - THE1C LTR MaLR 0 375 1 285 278 125 58 chrX 23045032 23045345 -139554585 - MLT1L LTR MaLR -91 524 191 252 313 18 37 chrX 23045614 23045723 -139554207 - MIR SINE MIR -113 95 21 269 206 0 14 chrX 23046482 23046555 -139553375 + GA-rich Low_complexity Low_complexity 2 73 0 2459 68 7 3 chrX 23046642 23046952 -139552978 + AluY SINE Alu 1 311 0 448 202 20 0 chrX 23047579 23047678 -139552252 - L2 LINE L2 -60 3253 3153 2002 177 23 14 chrX 23047685 23048114 -139551816 - MLT1C LTR MaLR 0 467 35 1769 139 86 15 chrX 23048118 23048457 -139551473 + MLT1B LTR MaLR 28 390 0 975 201 25 7 chrX 23048718 23049002 -139550928 + L1 LINE L1 3055 3343 -2803 919 147 100 5 chrX 23048994 23049184 -139550746 + L1PA16 LINE L1 5953 6160 -6 * 2412 107 19 25 chrX 23049187 23049553 -139550377 - THE1B LTR MaLR 0 364 1 5491 102 13 6 chrX 23049562 23050405 -139549525 + L1PA15 LINE L1 5317 6165 0 523 239 40 40 chrX 23050907 23051083 -139548847 - MIR SINE MIR -10 252 77 816 320 29 72 chrX 23052976 23053395 -139546535 - L2 LINE L2 -3 3269 2869 1552 329 76 58 chrX 23053439 23054789 -139545141 + L2 LINE L2 1290 2662 -652 331 343 49 14 chrX 23054821 23054964 -139544966 + L1ME LINE L1 3 150 -5920 2256 115 3 0 chrX 23055161 23055457 -139544473 + AluSx SINE Alu 1 297 -15 471 265 0 15 chrX 23057619 23057745 -139542185 - MIR3 SINE MIR -54 154 49 571 263 160 0 chrX 23059083 23059239 -139540691 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chrX 23059372 23059393 -139540537 + AT_rich Low_complexity Low_complexity 1 21 0 241 327 44 35 chrX 23059679 23059792 -139540138 - L2 LINE L2 -4 3268 3155 2543 62 0 0 chrX 23060884 23061191 -139538739 + AluY SINE Alu 1 307 -4 483 147 0 119 chrX 23062149 23062258 -139537672 + MER33 DNA MER1_type 5 100 -224 711 353 50 12 chrX 23062360 23062759 -139537171 + L2 LINE L2 2888 3301 -12 786 122 67 0 chrX 23062794 23062958 -139536972 + MER33 DNA MER1_type 150 324 0 27 0 0 0 chrX 23063102 23063129 -139536801 + AT_rich Low_complexity Low_complexity 1 27 0 672 284 96 5 chrX 23063193 23063390 -139536540 + MIR SINE MIR 13 227 -35 23 0 0 0 chrX 23063404 23063427 -139536503 + AT_rich Low_complexity Low_complexity 1 23 0 2385 32 0 3 chrX 23063427 23063709 -139536221 - L1PA5 LINE L1 -7 6147 5867 208 385 98 0 chrX 23064256 23064378 -139535552 - L2 LINE L2 -5 3267 3134 320 328 102 8 chrX 23064455 23064583 -139535347 + L2 LINE L2 3133 3272 0 442 241 82 15 chrX 23064878 23065073 -139534857 - L1ME4a LINE L1 -80 6041 5834 387 331 74 0 chrX 23065073 23065230 -139534700 - MIR3 SINE MIR -55 153 13 2039 158 60 77 chrX 23065230 23065754 -139534176 - L1MA9 LINE L1 -3 6309 5778 8214 102 14 35 chrX 23065754 23066078 -139533852 - HSMAR2 DNA Mariner -2 1300 970 2291 82 20 0 chrX 23066078 23066371 -139533559 + AluSp SINE Alu 1 299 -14 8214 102 14 35 chrX 23066371 23066923 -139533007 - HSMAR2 DNA Mariner -332 970 407 2053 132 0 10 chrX 23066923 23067226 -139532704 - AluSg SINE Alu -10 300 1 2483 53 0 40 chrX 23067228 23067549 -139532381 - AluY SINE Alu -3 308 1 8214 102 14 35 chrX 23067549 23067995 -139531935 - HSMAR2 DNA Mariner -896 406 3 2039 158 60 77 chrX 23067995 23068052 -139531878 - L1MA9 LINE L1 -534 5778 5738 734 284 45 45 chrX 23068154 23068572 -139531358 + L1MC/D LINE L1 5386 5803 -538 4517 151 63 9 chrX 23068613 23069556 -139530374 - L1 LINE L1 -843 6722 5730 * 4941 187 41 16 chrX 23069554 23070626 -139529304 - L1 LINE L1 -6453 1112 14 258 197 14 14 chrX 23071559 23071630 -139528300 - MLT1I LTR MaLR -24 385 315 717 233 73 96 chrX 23071853 23072427 -139527503 - MER34B LTR ERV1 0 565 5 6274 97 6 30 chrX 23072798 23074180 -139525750 + L1PA14 LINE L1 4809 6157 -4 1615 214 79 27 chrX 23074424 23074868 -139525062 + MLT1C LTR MaLR 1 467 0 184 205 13 90 chrX 23075134 23075212 -139524718 + L2 LINE L2 3131 3202 -111 314 86 15 0 chrX 23075212 23075286 -139524644 - AluSq SINE Alu -111 192 153 308 209 55 44 chrX 23075286 23075345 -139524585 + L2 LINE L2 3221 3283 -30 2502 174 24 67 chrX 23075345 23075924 -139524006 + MLT2B3 LTR ERVL 1 554 0 308 209 55 44 chrX 23075924 23075955 -139523975 + L2 LINE L2 3283 3312 -1 304 294 235 6 chrX 23076266 23076436 -139523494 + MIR SINE MIR 20 228 -34 189 356 14 0 chrX 23077581 23077654 -139522276 + MIR SINE MIR 183 256 -6 516 221 0 74 chrX 23077928 23078050 -139521880 + MER2 DNA MER2_type 1 113 -232 1150 103 108 5 chrX 23078153 23078347 -139521583 - MSTA LTR MaLR -214 214 1 1931 171 34 3 chrX 23078347 23078699 -139521231 - MLT2B2 LTR ERVL -152 363 1 2134 125 0 0 chrX 23079132 23079427 -139520503 + AluSx SINE Alu 1 295 -17 261 0 0 0 chrX 23079427 23079456 -139520474 + (CA)n Simple_repeat Simple_repeat 2 30 0 275 179 53 11 chrX 23079693 23079788 -139520142 + GA-rich Low_complexity Low_complexity 2 100 0 893 240 68 42 chrX 23079788 23080333 -139519597 + HAL1 LINE L1 880 1438 -1069 1780 80 0 4 chrX 23080363 23080588 -139519342 - AluSc SINE Alu -13 296 73 848 241 70 34 chrX 23080889 23081329 -139518601 + HAL1 LINE L1 2029 2484 -23 21 0 0 0 chrX 23081341 23081362 -139518568 + AT_rich Low_complexity Low_complexity 1 21 0 657 258 47 38 chrX 23081550 23081763 -139518167 - MIR SINE MIR -46 216 2 552 277 116 56 chrX 23082650 23082852 -139517078 + L1ME3A LINE L1 5103 5326 -820 1870 161 11 11 chrX 23082852 23083201 -139516729 + L1PA16 LINE L1 5811 6159 -7 552 277 116 56 chrX 23083201 23083265 -139516665 + L1ME3A LINE L1 5326 5385 -761 254 237 17 0 chrX 23083265 23083324 -139516606 + (TA)n Simple_repeat Simple_repeat 1 60 0 1393 226 157 6 chrX 23083336 23083827 -139516103 + L1ME3A LINE L1 5383 5947 -223 247 256 62 69 chrX 23083861 23084021 -139515909 + L1ME3A LINE L1 5924 6082 -88 22 35 0 0 chrX 23084025 23084054 -139515876 + AT_rich Low_complexity Low_complexity 1 29 0 890 91 0 38 chrX 23084597 23084783 -139515147 + (TA)n Simple_repeat Simple_repeat 1 179 0 312 158 20 30 chrX 23084860 23084961 -139514969 + (TA)n Simple_repeat Simple_repeat 1 100 0 2177 111 0 0 chrX 23085475 23085793 -139514137 + AluSg SINE Alu 2 319 0 1502 218 118 41 chrX 23085808 23086275 -139513655 - MLT1D LTR MaLR -2 503 1 3013 104 28 13 chrX 23086400 23086862 -139513068 - L1PA16 LINE L1 0 6166 5698 289 180 109 39 chrX 23086997 23087125 -139512805 - Charlie7 DNA MER1_type -49 2563 2427 * 407 181 0 57 chrX 23087092 23087197 -139512733 - Charlie7 DNA MER1_type -2500 112 14 32 26 0 0 chrX 23087393 23087432 -139512498 + AT_rich Low_complexity Low_complexity 1 39 0 529 276 71 36 chrX 23089481 23089677 -139510253 + MIR SINE MIR 50 252 -10 2292 103 0 7 chrX 23090808 23091110 -139508820 + AluSx SINE Alu 1 300 -12 477 278 5 49 chrX 23092380 23092585 -139507345 - MLT1K LTR MaLR 0 588 393 280 264 56 0 chrX 23092971 23093043 -139506887 + MLT1J LTR MaLR 121 196 -315 382 192 44 157 chrX 23093099 23093328 -139506602 + MLT1J LTR MaLR 291 493 -18 962 198 68 65 chrX 23093775 23094116 -139505814 + MLT1H LTR MaLR 5 302 -228 2182 86 0 30 chrX 23094336 23094639 -139505291 - AluY SINE Alu -17 294 1 260 319 0 0 chrX 23094881 23094953 -139504977 - MIR3 SINE MIR -29 179 108 188 225 0 0 chrX 23095090 23095130 -139504800 + MIR SINE MIR 211 250 -12 334 182 57 11 chrX 23095417 23095505 -139504425 - MLT1H LTR MaLR -4 545 454 207 0 0 0 chrX 23095527 23095550 -139504380 + (TTG)n Simple_repeat Simple_repeat 2 24 0 431 252 4 9 chrX 23095751 23095872 -139504058 - MLT1H LTR MaLR -387 162 1 301 341 85 30 chrX 23096188 23096391 -139503539 + L1ME4a LINE L1 4990 5217 -929 752 229 114 30 chrX 23096391 23096627 -139503303 - MIR SINE MIR -3 259 4 301 341 85 30 chrX 23096627 23096728 -139503202 + L1ME4a LINE L1 5217 5311 -835 300 286 178 13 chrX 23096735 23096966 -139502964 + L1ME4a LINE L1 5322 5590 -531 258 156 0 0 chrX 23096976 23097021 -139502909 + (CA)n Simple_repeat Simple_repeat 1 45 0 462 254 91 30 chrX 23097034 23097364 -139502566 + L1ME4a LINE L1 5603 5952 -169 2349 199 47 31 chrX 23098692 23099309 -139500621 + L1ME1 LINE L1 5538 6164 -2 2586 49 0 10 chrX 23099573 23099880 -139500050 + AluY SINE Alu 1 304 -7 2379 92 3 0 chrX 23099885 23100188 -139499742 + AluSp SINE Alu 1 304 -9 196 333 15 111 chrX 23100252 23100387 -139499543 + MIR3 SINE MIR 3 124 -84 668 315 123 26 chrX 23100414 23100805 -139499125 - LTR33 LTR ERVL -69 452 24 29447 97 9 118 chrX 23101270 23103733 -139496197 - L1P4 LINE L1 -602 5563 2834 22337 25 0 0 chrX 23103733 23107165 -139492765 - L1PA4 LINE L1 0 6155 2724 29447 97 9 118 chrX 23107165 23110965 -139488965 - L1P4 LINE L1 -3331 2834 1 1971 239 34 6 chrX 23110966 23111588 -139488342 - L1P LINE L1 -3048 3098 2460 365 365 8 8 chrX 23111607 23111733 -139488197 - L3 LINE CR1 -406 1171 1046 1602 65 0 0 chrX 23111803 23112004 -139487926 - L1PA7 LINE L1 -13 6141 5941 23 54 0 0 chrX 23112335 23112372 -139487558 + AT_rich Low_complexity Low_complexity 1 37 0 1417 161 40 4 chrX 23112431 23112704 -139487226 - L1MB5 LINE L1 0 6174 5892 190 276 46 99 chrX 23112735 23112887 -139487043 + L2 LINE L2 3063 3206 -66 932 263 128 64 chrX 23113140 23113799 -139486131 + HAL1 LINE L1 1765 2465 -42 3073 105 45 0 chrX 23114130 23114579 -139485351 + MER1A DNA MER1_type 61 529 0 292 279 147 79 chrX 23114592 23114857 -139485073 + L2 LINE L2 2914 3196 -76 328 224 20 41 chrX 23114984 23115082 -139484848 - MER94 DNA DNA -19 115 20 22 0 0 0 chrX 23115642 23115664 -139484266 + AT_rich Low_complexity Low_complexity 1 22 0 1565 158 7 39 chrX 23115710 23115989 -139483941 + AluJb SINE Alu 30 299 -13 734 249 109 42 chrX 23117060 23117484 -139482446 + MER57A LTR ERV1 1 401 -2 263 195 11 35 chrX 23118282 23118369 -139481561 + A-rich Low_complexity Low_complexity 5 89 0 2072 230 94 72 chrX 23118901 23119506 -139480424 + HAL1b LINE L1 88 678 -670 2344 99 0 0 chrX 23119506 23119800 -139480130 + AluSx SINE Alu 1 294 -18 2072 230 94 72 chrX 23119800 23119953 -139479977 + HAL1b LINE L1 678 826 -522 2315 94 3 7 chrX 23119953 23120260 -139479670 + AluSx SINE Alu 1 306 -6 2072 230 94 72 chrX 23120260 23120733 -139479197 + HAL1b LINE L1 826 1347 -1 446 313 0 23 chrX 23120785 23120916 -139479014 - L2 LINE L2 -1 3271 3144 398 308 115 23 chrX 23121129 23121352 -139478578 + MIR SINE MIR 20 262 0 1865 155 4 0 chrX 23122638 23122915 -139477015 + AluSx SINE Alu 1 278 -34 203 88 29 0 chrX 23122925 23122959 -139476971 + (GGAGAA)n Simple_repeat Simple_repeat 4 38 0 216 0 0 0 chrX 23122961 23122985 -139476945 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 215 363 94 18 chrX 23123043 23123214 -139476716 - MIR SINE MIR 0 262 79 493 313 88 6 chrX 23124734 23125213 -139474717 + L1MB8 LINE L1 4186 4703 -1443 331 354 73 35 chrX 23125242 23125502 -139474428 + L1MB8 LINE L1 4936 5205 -941 1153 281 88 12 chrX 23125697 23126198 -139473732 + L1MC4a LINE L1 5475 6013 -1795 770 141 0 32 chrX 23126249 23126405 -139473525 + MSTD LTR MaLR 1 151 -245 542 124 0 9 chrX 23126431 23126544 -139473386 + (TC)n Simple_repeat Simple_repeat 2 113 0 2127 45 0 0 chrX 23126654 23126899 -139473031 - AluY SINE Alu -66 245 1 505 86 0 0 chrX 23126899 23126969 -139472961 + MSTD LTR MaLR 327 396 0 26 30 0 0 chrX 23127027 23127060 -139472870 + AT_rich Low_complexity Low_complexity 1 33 0 2326 123 46 0 chrX 23127769 23128142 -139471788 + MLT1B LTR MaLR 1 390 0 552 108 0 0 chrX 23128142 23128225 -139471705 + MLT1B-int LTR MaLR 1 83 -1288 644 185 16 48 chrX 23128502 23128691 -139471239 - MER53 DNA DNA 0 189 7 4310 147 16 34 chrX 23128851 23129636 -139470294 + L1MB8 LINE L1 5342 6112 -66 1865 145 10 40 chrX 23129636 23129939 -139469991 - AluJb SINE Alu -16 296 3 4310 147 16 34 chrX 23129939 23130004 -139469926 + L1MB8 LINE L1 6112 6177 -1 501 240 57 11 chrX 23130651 23130826 -139469104 - L1MC4 LINE L1 -151 7891 7709 214 183 197 28 chrX 23131005 23131076 -139468854 + L2 LINE L2 3230 3312 -1 1040 30 0 30 chrX 23131711 23131846 -139468084 + L1PA5 LINE L1 6024 6154 0 377 305 87 28 chrX 23132515 23132836 -139467094 - L1M4 LINE L1 -1310 4836 4497 782 329 73 8 chrX 23132869 23133668 -139466262 - L1M4 LINE L1 -1806 4340 3490 21 0 0 0 chrX 23133775 23133796 -139466134 + AT_rich Low_complexity Low_complexity 1 21 0 2133 125 3 0 chrX 23134145 23134442 -139465488 - AluSx SINE Alu -14 298 1 213 39 0 0 chrX 23135352 23135378 -139464552 + (T)n Simple_repeat Simple_repeat 1 26 0 1183 111 0 0 chrX 23135393 23135546 -139464384 - AluSq SINE Alu -160 153 1 196 295 135 56 chrX 23135732 23136020 -139463910 + L2 LINE L2 2814 3124 -148 219 146 0 0 chrX 23136547 23136588 -139463342 + (TG)n Simple_repeat Simple_repeat 1 41 0 204 141 127 0 chrX 23137164 23137235 -139462695 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 261 290 16 0 chrX 23137710 23137772 -139462158 - MER91 DNA MER1_type -77 63 1 249 57 0 0 chrX 23138881 23138916 -139461014 + (A)n Simple_repeat Simple_repeat 1 35 0 397 325 8 0 chrX 23139236 23139359 -139460571 + L3b LINE CR1 1114 1237 -346 268 22 22 43 chrX 23139620 23139666 -139460264 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 571 279 9 0 chrX 23139723 23139834 -139460096 + L2 LINE L2 3139 3250 -22 447 288 56 28 chrX 23139837 23140122 -139459808 - L1ME4a LINE L1 -159 5962 5670 928 265 117 25 chrX 23141291 23141358 -139458572 + L2 LINE L2 2921 2980 -333 2153 229 19 14 chrX 23141358 23141874 -139458056 - LTR40a LTR ERVL 0 519 1 928 265 117 25 chrX 23141874 23142165 -139457765 + L2 LINE L2 2980 3312 -1 23 0 0 0 chrX 23142224 23142247 -139457683 + AT_rich Low_complexity Low_complexity 1 23 0 531 186 146 106 chrX 23142491 23142690 -139457240 + MER63A DNA MER1_type 1 207 -3 810 175 55 27 chrX 23142850 23143033 -139456897 - MER5A DNA MER1_type 0 189 2 962 152 5 76 chrX 23144448 23144646 -139455284 + MER5A DNA MER1_type 3 186 -3 470 177 0 0 chrX 23145333 23145412 -139454518 + Tigger5 DNA MER2_type 1 79 -2244 330 218 0 26 chrX 23145414 23145492 -139454438 - Tigger5 DNA MER2_type -6 2317 2242 263 259 0 0 chrX 23145490 23145548 -139454382 + Tigger5 DNA MER2_type 2266 2323 0 * 616 279 11 11 chrX 23145654 23145833 -139454097 + MIR SINE MIR 72 250 -12 233 250 21 0 chrX 23145869 23145965 -139453965 + (CATA)n Simple_repeat Simple_repeat 3 100 0 503 313 66 33 chrX 23146488 23146760 -139453170 + L2 LINE L2 2809 3089 -183 306 195 92 69 chrX 23146766 23146853 -139453077 + L2 LINE L2 3219 3307 -6 234 288 0 0 chrX 23147670 23147729 -139452201 + L2 LINE L2 3214 3272 0 588 204 204 7 chrX 23147997 23148139 -139451791 + MER5A DNA MER1_type 20 189 0 444 271 73 83 chrX 23148257 23148475 -139451455 - LTR67 LTR ERVL -7 550 335 598 212 112 35 chrX 23148503 23148673 -139451257 - MER63A DNA MER1_type -27 183 1 536 231 19 0 chrX 23148831 23148939 -139450991 - MER5B DNA MER1_type 0 178 69 506 85 12 16 chrX 23149066 23149168 -139450762 - L1M1 LINE L1 -606 5549 5449 276 246 15 0 chrX 23149168 23149233 -139450697 - MER5B DNA MER1_type -109 69 4 380 133 89 33 chrX 23149500 23149590 -139450340 + MER5A DNA MER1_type 27 121 -68 301 217 61 70 chrX 23149510 23149625 -139450305 - MER5A DNA MER1_type -26 163 50 * 228 260 211 0 chrX 23150157 23150261 -139449669 - MIR SINE MIR -97 165 40 349 269 124 35 chrX 23150733 23150878 -139449052 - MIR SINE MIR -91 171 14 530 205 87 39 chrX 23150986 23151113 -139448817 - MER5B DNA MER1_type -45 133 1 362 315 41 20 chrX 23151448 23151594 -139448336 + MIR SINE MIR 112 260 -2 21 0 0 0 chrX 23151902 23151923 -139448007 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chrX 23152279 23152306 -139447624 + (A)n Simple_repeat Simple_repeat 1 27 0 214 263 26 26 chrX 23152918 23152994 -139446936 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2436 89 0 3 chrX 23153609 23153913 -139446017 - AluSx SINE Alu -9 303 1 21 0 0 0 chrX 23154889 23154910 -139445020 + AT_rich Low_complexity Low_complexity 1 21 0 466 281 109 21 chrX 23155271 23155463 -139444467 + MIR SINE MIR 9 217 -45 254 308 112 0 chrX 23155710 23155817 -139444113 + L2 LINE L2 3194 3312 -1 203 282 0 0 chrX 23158029 23158068 -139441862 - L2 LINE L2 -24 3248 3210 1396 221 123 17 chrX 23158354 23158761 -139441169 + MLT1J2 LTR MaLR 1 450 0 696 228 13 27 chrX 23158808 23158957 -139440973 + L2 LINE L2 3167 3313 0 2204 110 3 0 chrX 23159205 23159504 -139440426 + AluSx SINE Alu 1 300 -12 1139 237 84 69 chrX 23159601 23160078 -139439852 + LTR33A LTR ERVL 1 484 -39 1680 184 14 35 chrX 23160078 23160447 -139439483 + MLT1A2 LTR MaLR 1 361 -13 251 182 0 0 chrX 23160442 23160486 -139439444 + LTR33A LTR ERVL 480 523 0 * 926 342 130 25 chrX 23160495 23161258 -139438672 + L2 LINE L2 1930 2772 -542 624 250 99 60 chrX 23161398 23161650 -139438280 - MLT1J2 LTR MaLR -157 293 32 260 250 185 11 chrX 23162050 23162153 -139437777 - MIR SINE MIR -67 141 35 198 0 0 0 chrX 23162579 23162601 -139437329 + (GA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chrX 23162600 23162622 -139437308 + (TG)n Simple_repeat Simple_repeat 2 23 0 333 301 45 32 chrX 23163839 23163995 -139435935 + MIR SINE MIR 99 256 -6 380 190 13 0 chrX 23164473 23164552 -139435378 - MER116 DNA Mariner 0 80 1 1139 186 23 5 chrX 23164865 23165080 -139434850 - MER20 DNA MER1_type 0 219 1 198 0 0 0 chrX 23165731 23165753 -139434177 + (T)n Simple_repeat Simple_repeat 1 22 0 704 257 6 23 chrX 23167498 23167669 -139432261 + MER5B DNA MER1_type 7 174 -4 1042 145 56 0 chrX 23167720 23167899 -139432031 - MER5A DNA MER1_type 0 189 1 2097 177 204 25 chrX 23168597 23169152 -139430778 - MLT1E1 LTR MaLR 0 654 1 23 33 0 0 chrX 23170635 23170665 -139429265 + AT_rich Low_complexity Low_complexity 1 30 0 1321 191 78 72 chrX 23171473 23171669 -139428261 - L1MC5 LINE L1 -435 7526 7333 1041 181 38 9 chrX 23171669 23171879 -139428051 + MER20 DNA MER1_type 2 217 -2 1321 191 78 72 chrX 23171879 23172169 -139427761 - L1MC5 LINE L1 -628 7333 7037 551 291 44 11 chrX 23172170 23172361 -139427569 + MIR SINE MIR 8 204 -58 3469 236 87 57 chrX 23172365 23172683 -139427247 - L2 LINE L2 -1 3312 3005 1968 102 3 14 chrX 23172683 23172966 -139426964 + AluSg SINE Alu 1 280 -30 3469 236 87 57 chrX 23172966 23174017 -139425913 - L2 LINE L2 -308 3005 1914 1130 87 11 38 chrX 23374092 23374275 -139225655 - AluSg/x SINE Alu -15 297 120 595 207 9 0 chrX 23374280 23374396 -139225534 - Charlie2a DNA MER1_type -1222 1640 1524 1735 135 6 48 chrX 23374411 23374722 -139225208 + AluJb SINE Alu 1 298 -14 273 119 0 0 chrX 23374753 23374795 -139225135 + (T)n Simple_repeat Simple_repeat 1 42 0 529 200 17 17 chrX 23375167 23375282 -139224648 - Charlie2 DNA MER1_type -2553 309 195 670 153 0 9 chrX 23375286 23375397 -139224533 - FLAM_C SINE Alu -14 129 20 2077 116 0 3 chrX 23375398 23375700 -139224230 + AluSx SINE Alu 1 301 -11 934 129 0 0 chrX 23375801 23375933 -139223997 - FLAM_C SINE Alu -1 132 1 416 294 96 0 chrX 23375945 23376091 -139223839 - Charlie2 DNA MER1_type -2698 164 5 2279 71 3 19 chrX 23376294 23376605 -139223325 + AluSp SINE Alu 1 306 -7 1840 141 30 20 chrX 23377445 23377744 -139222186 + AluJb SINE Alu 1 302 -10 2168 77 3 3 chrX 23378266 23378552 -139221378 + AluSp SINE Alu 1 286 -27 1157 142 19 15 chrX 23378575 23378780 -139221150 - LTR49 LTR ERV1 0 595 390 1250 90 0 11 chrX 23378780 23378958 -139220972 + AluSc SINE Alu 133 308 -1 1799 145 112 22 chrX 23378959 23379324 -139220606 - LTR49 LTR ERV1 -197 398 1 1733 159 3 14 chrX 23379643 23379939 -139219991 + AluJb SINE Alu 2 294 -18 483 212 107 33 chrX 23379965 23380150 -139219780 - MER63 DNA MER1_type 0 1061 1 228 179 0 26 chrX 23380192 23380231 -139219699 + L2 LINE L2 3219 3256 -16 2288 98 0 7 chrX 23380273 23380579 -139219351 + AluSx SINE Alu 2 305 -7 2236 60 0 0 chrX 23380577 23380859 -139219071 + AluY SINE Alu 27 308 -3 * 213 232 18 0 chrX 23380982 23381038 -139218892 + (TTG)n Simple_repeat Simple_repeat 1 57 0 524 251 67 27 chrX 23381285 23381508 -139218422 + L1MC4 LINE L1 6837 7068 -974 815 143 0 0 chrX 23381514 23381633 -139218297 + AluJb SINE Alu 2 120 -192 558 211 72 33 chrX 23381666 23381818 -139218112 + L1MC5 LINE L1 6960 7117 -844 917 120 0 0 chrX 23381835 23381960 -139217970 - FLAM_C SINE Alu -16 127 3 876 199 71 26 chrX 23381962 23382188 -139217742 + L1MC5 LINE L1 7106 7341 -620 2361 75 0 7 chrX 23382304 23382610 -139217320 + AluSx SINE Alu 1 304 -8 2020 129 3 3 chrX 23383098 23383401 -139216529 - AluSx SINE Alu -9 303 1 2520 50 0 0 chrX 23383455 23383756 -139216174 + AluY SINE Alu 1 301 -10 323 244 77 13 chrX 23383758 23383836 -139216094 + MER5B DNA MER1_type 96 178 0 711 244 54 24 chrX 23383974 23384179 -139215751 + MIR SINE MIR 51 261 -1 795 120 0 0 chrX 23384187 23384304 -139215626 - AluSg/x SINE Alu 0 310 194 506 50 0 0 chrX 23384300 23384385 -139215545 + AluSp/q SINE Alu 225 309 0 * 2169 99 0 3 chrX 23384948 23385250 -139214680 - AluSg SINE Alu -7 303 3 1670 156 9 37 chrX 23385280 23385601 -139214329 + AluJo SINE Alu 1 312 0 28 0 0 0 chrX 23385602 23385630 -139214300 + AT_rich Low_complexity Low_complexity 1 28 0 1520 165 60 11 chrX 23386613 23386898 -139213032 + AluJo SINE Alu 1 299 -13 2304 61 0 35 chrX 23386903 23387216 -139212714 + AluY SINE Alu 1 302 -9 2330 55 7 32 chrX 23387509 23387819 -139212111 + AluY SINE Alu 1 302 -9 1917 153 0 0 chrX 23387865 23388160 -139211770 + AluSx SINE Alu 2 296 -16 207 0 0 0 chrX 23390016 23390039 -139209891 + (A)n Simple_repeat Simple_repeat 1 23 0 826 229 149 0 chrX 23391830 23392044 -139207886 + Charlie1 DNA MER1_type 1 246 -2515 440 260 82 111 chrX 23392128 23392300 -139207630 - L1MEc LINE L1 -4461 1754 1630 685 82 122 0 chrX 23392300 23392398 -139207532 - HY1 scRNA scRNA -2 110 1 440 260 82 111 chrX 23392398 23392569 -139207361 - L1MEc LINE L1 -4585 1630 1455 424 198 44 0 chrX 23392586 23392677 -139207253 + Charlie1 DNA MER1_type 159 253 -2508 988 89 0 15 chrX 23392707 23392842 -139207088 - FLAM_C SINE Alu 0 133 1 1757 104 0 12 chrX 23393307 23393566 -139206364 + AluSg SINE Alu 49 304 -6 1955 114 3 23 chrX 23393636 23393942 -139205988 + AluJo SINE Alu 1 300 -12 509 25 51 0 chrX 23394081 23394160 -139205770 + (TA)n Simple_repeat Simple_repeat 2 84 0 1785 112 78 0 chrX 23394160 23394429 -139205501 - AluSx SINE Alu -22 290 1 336 236 14 0 chrX 23394451 23394523 -139205407 - L1MCa LINE L1 -4359 2067 1995 * 426 230 47 0 chrX 23394477 23394575 -139205355 + L1MC4 LINE L1 6571 6646 -1139 207 139 0 0 chrX 23394578 23394614 -139205316 + (TA)n Simple_repeat Simple_repeat 1 36 0 2170 97 3 0 chrX 23394629 23394917 -139205013 - AluSp SINE Alu -24 289 1 1281 131 0 10 chrX 23394919 23395118 -139204812 - AluJo SINE Alu -11 301 105 186 43 0 0 chrX 23395122 23395145 -139204785 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 910 207 83 5 chrX 23395170 23395363 -139204567 - AluJb SINE Alu -89 223 16 252 245 40 146 chrX 23395703 23395756 -139204174 - MIR SINE MIR -38 224 167 2200 102 0 0 chrX 23395756 23396051 -139203879 - AluSx SINE Alu -17 295 1 1931 122 0 45 chrX 23396055 23396223 -139203707 - AluSx SINE Alu -14 298 149 2079 110 10 0 chrX 23396223 23396523 -139203407 - AluSp SINE Alu -10 303 1 1931 122 0 45 chrX 23396523 23396666 -139203264 - AluSx SINE Alu -163 149 1 1615 188 3 7 chrX 23396669 23396961 -139202969 - AluJo SINE Alu -21 291 1 252 245 40 146 chrX 23396961 23397049 -139202881 - MIR SINE MIR -100 162 90 2180 86 10 0 chrX 23397140 23397432 -139202498 - AluSx SINE Alu -17 295 1 1702 150 29 69 chrX 23397450 23397630 -139202300 - L1M3 LINE L1 -513 5658 5472 1428 162 3 81 chrX 23397630 23397963 -139201967 - AluJo SINE Alu -5 307 1 1702 150 29 69 chrX 23397963 23398121 -139201809 - L1M3 LINE L1 -699 5472 5334 1716 154 27 7 chrX 23398121 23398414 -139201516 - AluSx SINE Alu -13 299 1 1702 150 29 69 chrX 23398414 23398453 -139201477 - L1M3 LINE L1 -837 5334 5295 2150 107 3 0 chrX 23398458 23398758 -139201172 - AluSx SINE Alu -10 302 2 297 273 121 10 chrX 23398763 23398862 -139201068 - L2 LINE L2 -14 3258 3149 1270 166 0 0 chrX 23399151 23399350 -139200580 + AluJo SINE Alu 5 203 -109 1813 143 3 44 chrX 23399409 23399573 -139200357 - AluJo SINE Alu -4 308 162 2119 112 0 0 chrX 23399573 23399867 -139200063 + AluSc SINE Alu 1 294 -15 1813 143 3 44 chrX 23399867 23400023 -139199907 - AluJo SINE Alu -150 162 1 1907 137 23 13 chrX 23400331 23400637 -139199293 + AluSx SINE Alu 1 309 -3 354 320 46 26 chrX 23400695 23400848 -139199082 - L2 LINE L2 0 3313 3158 2023 121 6 10 chrX 23401563 23401876 -139198054 + AluSx SINE Alu 1 312 0 266 296 80 0 chrX 23401880 23401968 -139197962 - L2 LINE L2 -20 3252 3158 233 65 0 0 chrX 23401985 23402016 -139197914 - MIR SINE MIR -120 142 112 2067 79 4 4 chrX 23402094 23402371 -139197559 - AluSq SINE Alu -36 277 1 231 196 0 18 chrX 23402374 23402430 -139197500 - L1 LINE L1 -978 5168 5114 988 180 51 0 chrX 23402430 23402608 -139197322 - MLT1E LTR MaLR -406 187 1 432 0 0 0 chrX 23402609 23402657 -139197273 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1715 128 0 58 chrX 23402735 23402931 -139196999 - AluSx SINE Alu -17 295 122 2280 85 0 3 chrX 23402931 23403236 -139196694 - AluSq SINE Alu -9 304 1 1715 128 0 58 chrX 23403236 23403351 -139196579 - AluSx SINE Alu -190 122 2 303 291 107 10 chrX 23403352 23403455 -139196475 - L2 LINE L2 -11 3261 3149 1724 126 53 0 chrX 23403745 23404030 -139195900 + AluSx SINE Alu 5 304 -8 1000 119 0 65 chrX 23404035 23404223 -139195707 + AluSg/x SINE Alu 126 302 0 1793 117 4 4 chrX 23404775 23405040 -139194890 - AluSx SINE Alu -47 265 1 2117 70 7 11 chrX 23405142 23405460 -139194470 + AluSg SINE Alu 1 317 0 1702 59 0 18 chrX 23405460 23405682 -139194248 + AluSc SINE Alu 72 289 -20 7867 163 122 37 chrX 23405982 23407600 -139192330 + MER52A LTR ERV1 1 1755 0 455 78 16 0 chrX 23407991 23408055 -139191875 + MER41A LTR ERV1 400 464 -90 2149 128 0 0 chrX 23408055 23408367 -139191563 + AluSx SINE Alu 1 312 0 582 254 98 29 chrX 23408613 23408818 -139191112 + MIR SINE MIR 38 256 -6 1019 128 0 0 chrX 23409350 23409499 -139190431 - AluSg/x SINE Alu -6 306 158 833 92 0 0 chrX 23409499 23409608 -139190322 - AluSc SINE Alu -198 111 3 350 267 95 0 chrX 23409657 23409773 -139190157 - L2 LINE L2 0 3313 3187 2248 108 0 3 chrX 23409892 23410198 -139189732 + AluSx SINE Alu 1 305 -7 2205 98 0 3 chrX 23410198 23410494 -139189436 + AluSg SINE Alu 1 295 -15 1651 144 31 24 chrX 23410497 23410788 -139189142 + AluJb SINE Alu 1 293 -19 1157 269 43 34 chrX 23411201 23411226 -139188704 - L1ME LINE L1 -402 5760 5737 936 116 12 6 chrX 23411226 23411390 -139188540 + (TTTC)n Simple_repeat Simple_repeat 3 167 0 2049 101 0 3 chrX 23411390 23411671 -139188259 - AluSx SINE Alu -32 280 1 1157 269 43 34 chrX 23411671 23412065 -139187865 - L1ME LINE L1 -425 5737 5348 2047 106 7 7 chrX 23412065 23412366 -139187564 - AluSx SINE Alu -11 301 1 1157 269 43 34 chrX 23412366 23412565 -139187365 - L1ME LINE L1 -814 5348 5135 1793 147 7 3 chrX 23412565 23412857 -139187073 + AluJo SINE Alu 1 293 -19 307 254 58 87 chrX 23412870 23413008 -139186922 - L1ME LINE L1 -3663 2483 2350 2159 96 13 0 chrX 23413025 23413327 -139186603 - AluSq SINE Alu -7 306 1 23 0 0 0 chrX 23413329 23413352 -139186578 + AT_rich Low_complexity Low_complexity 1 23 0 1028 114 13 0 chrX 23413356 23413531 -139186399 - AluJb SINE Alu 0 308 132 2028 96 0 4 chrX 23413539 23413854 -139186076 - AluSg SINE Alu 0 314 1 445 37 0 0 chrX 23414776 23414830 -139185100 + MADE1 DNA Mariner 27 80 0 486 227 106 28 chrX 23414855 23414996 -139184934 + MIR SINE MIR 71 222 -40 2077 123 3 0 chrX 23415033 23415325 -139184605 - AluSx SINE Alu -19 293 1 2017 101 0 17 chrX 23415423 23415745 -139184185 + AluSq SINE Alu 3 319 0 546 186 59 0 chrX 23416216 23416334 -139183596 - MER96B DNA MER1_type? 0 417 293 315 208 0 0 chrX 23416328 23416381 -139183549 - MER96B DNA MER1_type? -364 53 1 * 230 287 168 86 chrX 23416760 23416893 -139183037 + L3 LINE CR1 1150 1271 -306 2101 89 0 4 chrX 23416893 23417199 -139182731 + AluY SINE Alu 1 305 0 230 287 168 86 chrX 23417199 23417331 -139182599 + L3 LINE CR1 1271 1439 -138 1917 139 13 3 chrX 23417388 23417690 -139182240 - AluJb SINE Alu -7 305 1 240 284 159 0 chrX 23418094 23418182 -139181748 + MIR SINE MIR 40 141 -67 1637 140 32 0 chrX 23418204 23418454 -139181476 - AluJb SINE Alu -54 258 1 1949 128 0 33 chrX 23418707 23419013 -139180917 - AluSx SINE Alu -13 299 4 2205 102 3 0 chrX 23419088 23419392 -139180538 - AluSp SINE Alu -8 305 1 1152 306 30 66 chrX 23419625 23419823 -139180107 + HERVL LTR ERVL 4153 4357 -1297 1887 124 7 0 chrX 23419823 23420118 -139179812 - AluSx SINE Alu 0 302 6 1152 306 30 66 chrX 23420118 23420461 -139179469 + HERVL LTR ERVL 4357 4675 -979 1312 162 97 0 chrX 23420475 23420703 -139179227 - MLT1E1 LTR MaLR 0 654 405 2195 107 0 0 chrX 23420731 23421039 -139178891 - AluSx SINE Alu -4 308 1 1070 277 56 56 chrX 23421660 23422086 -139177844 + LTR16B LTR ERVL 2 427 -37 2014 138 0 0 chrX 23422210 23422515 -139177415 - AluSx SINE Alu -7 305 1 2157 130 0 3 chrX 23422561 23422868 -139177062 - AluSq SINE Alu -7 306 1 875 83 33 8 chrX 23422912 23423032 -139176898 - AluSg/x SINE Alu -12 298 176 1412 109 0 0 chrX 23423096 23423289 -139176641 + AluSq SINE Alu 121 313 0 2235 109 3 3 chrX 23423360 23423664 -139176266 - AluSx SINE Alu -8 304 1 233 277 18 62 chrX 23423782 23423894 -139176036 + MLT1K LTR MaLR 164 270 -318 704 130 35 0 chrX 23424111 23424226 -139175704 - MER1B DNA MER1_type -120 177 59 1862 151 17 0 chrX 23424285 23424576 -139175354 - AluSq SINE Alu -17 296 1 1368 288 66 14 chrX 23424780 23425266 -139174664 + MLT1J LTR MaLR 1 511 0 2332 93 7 0 chrX 23425524 23425824 -139174106 + AluSx SINE Alu 5 306 -6 780 230 139 64 chrX 23425847 23426205 -139173725 - MLT1G3 LTR MaLR -33 497 97 2404 106 0 0 chrX 23426205 23426506 -139173424 - AluSx SINE Alu -11 301 1 780 230 139 64 chrX 23426506 23426611 -139173319 - MLT1G3 LTR MaLR -433 97 1 348 295 36 18 chrX 23427531 23427643 -139172287 - L2 LINE L2 0 3313 3200 2232 100 0 0 chrX 23427669 23427974 -139171956 - AluSx SINE Alu 0 305 1 559 165 18 0 chrX 23428165 23428274 -139171656 - MER20 DNA MER1_type -51 168 58 2241 110 0 10 chrX 23428719 23429020 -139170910 - AluSx SINE Alu -14 298 1 1237 146 27 5 chrX 23429431 23429650 -139170280 - L1MB2 LINE L1 -266 5905 5682 2419 85 0 0 chrX 23429672 23429967 -139169963 + AluSc SINE Alu 1 295 -14 532 77 121 0 chrX 23429971 23430062 -139169868 - L1MB8 LINE L1 -11 6167 6066 357 208 94 10 chrX 23430105 23430201 -139169729 + MLT2C1 LTR ERVL 14 117 -280 311 124 0 50 chrX 23430187 23430203 -139169727 + AluSc SINE Alu 118 133 -166 * 2330 88 3 10 chrX 23430203 23430511 -139169419 + AluSx SINE Alu 1 306 -6 311 124 0 50 chrX 23430511 23430561 -139169369 + AluSc SINE Alu 133 170 -129 239 227 155 41 chrX 23430581 23430678 -139169252 + MLT1E3 LTR MaLR 127 234 -390 * 815 219 12 62 chrX 23430605 23430861 -139169069 + MLT2C1 LTR ERVL 153 395 -2 1385 191 102 57 chrX 23430867 23431044 -139168886 - L1MC3 LINE L1 -743 5403 5235 1819 166 25 0 chrX 23431044 23431327 -139168603 - AluJo SINE Alu -22 290 1 1385 191 102 57 chrX 23431327 23431736 -139168194 - L1MC3 LINE L1 -911 5235 4846 2047 133 14 3 chrX 23431736 23432030 -139167900 + AluSx SINE Alu 1 297 -15 1385 191 102 57 chrX 23432030 23432046 -139167884 - L1MC3 LINE L1 -1300 4846 5319 2426 77 0 10 chrX 23432046 23432210 -139167720 - AluSx SINE Alu -15 297 136 2147 109 28 0 chrX 23432210 23432494 -139167436 - AluSx SINE Alu -20 292 1 2426 77 0 10 chrX 23432494 23432629 -139167301 - AluSx SINE Alu -176 136 1 1385 191 102 57 chrX 23432629 23432735 -139167195 - L1MC3 LINE L1 -826 5320 5220 969 149 0 0 chrX 23432749 23432890 -139167040 - FLAM_C SINE Alu -1 142 2 1622 154 85 7 chrX 23432890 23433162 -139166768 - AluJo SINE Alu -19 293 1 751 208 32 74 chrX 23433162 23433378 -139166552 - L1MC3 LINE L1 -943 5203 4997 1240 251 47 73 chrX 23433940 23434205 -139165725 - MER68 LTR ERV1 -37 525 280 2129 126 20 0 chrX 23434205 23434498 -139165432 - AluJb SINE Alu -13 299 1 1240 251 47 73 chrX 23434498 23434767 -139165163 - MER68 LTR ERV1 -282 280 5 2302 78 3 7 chrX 23434900 23435193 -139164737 - AluSx SINE Alu -20 292 1 350 241 12 0 chrX 23435341 23435424 -139164506 - MLT1J LTR MaLR -328 183 100 1819 182 23 7 chrX 23435532 23435839 -139164091 + AluJo SINE Alu 1 312 0 846 121 0 0 chrX 23435849 23435965 -139163965 + FLAM_C SINE Alu 1 116 -17 2448 92 0 0 chrX 23436068 23436374 -139163556 + AluSg SINE Alu 1 306 -4 864 171 0 0 chrX 23436390 23436530 -139163400 + FLAM_C SINE Alu 1 140 -3 24 0 0 0 chrX 23436530 23436554 -139163376 + AT_rich Low_complexity Low_complexity 1 24 0 2272 132 0 0 chrX 23437101 23437411 -139162519 + AluSx SINE Alu 1 310 -2 1942 91 42 4 chrX 23437959 23438222 -139161708 - AluSq SINE Alu -7 306 34 1832 228 101 6 chrX 23438474 23438969 -139160961 + MER34 LTR ERV1 1 542 0 536 177 28 14 chrX 23439033 23439174 -139160756 + CT-rich Low_complexity Low_complexity 4 146 0 2320 101 3 0 chrX 23439188 23439485 -139160445 - AluSq SINE Alu -15 298 1 1937 158 7 3 chrX 23439486 23439784 -139160146 - AluJb SINE Alu -13 299 1 2342 92 0 7 chrX 23440067 23440370 -139159560 - AluSg SINE Alu -9 301 1 2290 47 61 0 chrX 23440379 23440656 -139159274 - AluY SINE Alu -17 294 1 2177 92 58 0 chrX 23440719 23441011 -139158919 - AluSc SINE Alu 0 309 1 347 248 0 35 chrX 23441572 23441713 -139158217 + AluSg/x SINE Alu 167 302 0 1908 116 26 33 chrX 23441749 23442052 -139157878 + AluSx SINE Alu 1 301 -11 270 56 0 0 chrX 23442063 23442099 -139157831 + (TG)n Simple_repeat Simple_repeat 2 37 0 2382 71 0 0 chrX 23442099 23442381 -139157549 - AluSc SINE Alu -27 282 1 2430 70 0 52 chrX 23442455 23442782 -139157148 - AluSg SINE Alu 0 310 1 2375 102 0 0 chrX 23443201 23443506 -139156424 - AluSx SINE Alu -7 305 1 1732 72 0 42 chrX 23443571 23443617 -139156313 + L1M3 LINE L1 5571 5617 -554 1772 189 0 13 chrX 23443617 23443919 -139156011 + AluJo SINE Alu 2 299 -13 1732 72 0 42 chrX 23443919 23444135 -139155795 + L1M3 LINE L1 5617 5822 -349 839 129 8 8 chrX 23444151 23444275 -139155655 + FLAM_C SINE Alu 9 132 -11 2064 141 32 0 chrX 23444275 23444622 -139155308 + L1MB2 LINE L1 5814 6171 0 241 351 27 0 chrX 23444623 23444734 -139155196 - LTR67 LTR ERVL -15 542 429 2191 101 16 29 chrX 23445679 23445986 -139153944 - AluSx SINE Alu -9 303 1 207 0 0 0 chrX 23446067 23446090 -139153840 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 685 147 10 0 chrX 23446090 23446192 -139153738 + AluSg SINE Alu 2 104 -206 265 177 0 0 chrX 23446623 23446685 -139153245 + T-rich Low_complexity Low_complexity 1 62 0 274 284 0 0 chrX 23448664 23448752 -139151178 - L1MEc LINE L1 -4997 1399 1312 2396 86 0 16 chrX 23448858 23449173 -139150757 - AluY SINE Alu -1 310 1 2395 111 0 0 chrX 23449392 23449698 -139150232 + AluSx SINE Alu 1 306 -6 838 62 15 0 chrX 23450538 23450668 -139149262 + (TGGG)n Simple_repeat Simple_repeat 2 133 0 2191 92 58 0 chrX 23451379 23451671 -139148259 - AluSc SINE Alu 0 309 1 2237 65 7 24 chrX 23451770 23452061 -139147869 - AluY SINE Alu -25 286 1 281 261 0 39 chrX 23452609 23452789 -139147141 + G-rich Low_complexity Low_complexity 2 174 0 675 199 14 28 chrX 23452802 23453224 -139146706 + GA-rich Low_complexity Low_complexity 1 416 0 1845 209 16 16 chrX 23453372 23453746 -139146184 + MLT1A2 LTR MaLR 1 374 0 281 250 5 11 chrX 23454052 23454247 -139145683 + C-rich Low_complexity Low_complexity 1 193 0 2299 105 7 3 chrX 23454516 23454820 -139145110 + AluSx SINE Alu 1 305 -7 1031 207 28 28 chrX 23455931 23456182 -139143748 - AluJo SINE Alu -51 261 11 1075 180 64 9 chrX 23456191 23456424 -139143506 + MLT1A2-int LTR MaLR 1485 1730 -5 385 250 52 0 chrX 23456436 23456532 -139143398 + MLT1A2 LTR MaLR 1 101 -273 423 181 29 14 chrX 23456602 23456740 -139143190 + CT-rich Low_complexity Low_complexity 4 143 0 265 222 5 53 chrX 23456810 23456999 -139142931 + C-rich Low_complexity Low_complexity 1 180 0 1898 272 58 22 chrX 23457204 23457843 -139142087 + L1MEc LINE L1 115 776 -5620 506 243 7 29 chrX 23457880 23458189 -139141741 + C-rich Low_complexity Low_complexity 1 301 0 524 232 40 0 chrX 23458321 23458446 -139141484 - L1MC5 LINE L1 -726 7235 7106 1774 143 49 18 chrX 23458448 23458734 -139141196 + AluJb SINE Alu 3 297 -15 1754 134 0 11 chrX 23460609 23460870 -139139060 + AluJb SINE Alu 40 297 -15 315 292 145 65 chrX 23461178 23461579 -139138351 - L1 LINE L1 -2833 3313 2881 2264 110 3 0 chrX 23461780 23462081 -139137849 - AluSg SINE Alu -8 302 1 1944 130 3 10 chrX 23462133 23462433 -139137497 - AluSx SINE Alu -14 298 1 2594 68 3 0 chrX 23462688 23462996 -139136934 + AluSg SINE Alu 1 309 -1 708 132 0 0 chrX 23463040 23463146 -139136784 - FLAM_C SINE Alu -10 133 28 2344 94 16 3 chrX 23463700 23464009 -139135921 - AluSq SINE Alu 0 313 1 376 274 73 76 chrX 23464126 23464443 -139135487 + MLT1K LTR MaLR 164 479 -109 470 285 30 45 chrX 23465075 23465275 -139134655 + L2 LINE L2 3112 3308 -5 711 169 33 87 chrX 23465404 23465526 -139134404 + MER5B DNA MER1_type 1 111 -67 2376 86 7 0 chrX 23465526 23465828 -139134102 - AluSx SINE Alu -8 304 1 711 169 33 87 chrX 23465828 23465888 -139134042 + MER5B DNA MER1_type 111 173 -5 381 58 0 0 chrX 23467182 23467234 -139132696 + (TC)n Simple_repeat Simple_repeat 1 52 0 2069 127 3 3 chrX 23467465 23467757 -139132173 + AluSx SINE Alu 1 292 -20 1272 148 5 0 chrX 23468084 23468301 -139131629 - L1M2 LINE L1 -631 5681 5464 1286 51 6 0 chrX 23468308 23468466 -139131464 - L1PA3 LINE L1 -2 6153 5995 465 19 0 0 chrX 23468676 23468730 -139131200 + (TG)n Simple_repeat Simple_repeat 2 55 0 2167 110 14 0 chrX 23469038 23469328 -139130602 + AluSx SINE Alu 2 295 -17 1839 135 49 17 chrX 23469632 23469920 -139130010 - AluJb SINE Alu -15 297 1 810 217 9 74 chrX 23469973 23470190 -139129740 - MIR SINE MIR 0 262 60 2009 109 65 0 chrX 23470193 23470468 -139129462 - AluSq SINE Alu -20 293 1 2157 128 10 0 chrX 23470828 23471117 -139128813 - AluSx SINE Alu -20 292 1 284 254 0 0 chrX 23471065 23471124 -139128806 - AluYa8 SINE Alu -115 185 127 2489 70 3 0 chrX 23471277 23471577 -139128353 + AluY SINE Alu 1 301 -10 2205 113 0 0 chrX 23472102 23472413 -139127517 - AluSx SINE Alu -1 311 1 1954 141 0 0 chrX 23472606 23472905 -139127025 - AluJb SINE Alu -11 301 3 185 331 63 63 chrX 23473212 23473387 -139126543 - L2 LINE L2 -93 3220 3046 1680 105 116 8 chrX 23474173 23474440 -139125490 - AluSg1 SINE Alu 0 309 14 1918 83 12 0 chrX 23474440 23474694 -139125236 - AluSg1 SINE Alu -8 301 45 2172 82 3 0 chrX 23475383 23475689 -139124241 + AluSq SINE Alu 1 307 0 1197 102 11 6 chrX 23475689 23475866 -139124064 + AluSg/x SINE Alu 126 303 -9 186 261 63 84 chrX 23476472 23476614 -139123316 - MIR SINE MIR -26 236 98 628 242 104 91 chrX 23476861 23477457 -139122473 - L1MC4 LINE L1 -8 8033 7351 236 336 10 10 chrX 23477544 23477648 -139122282 + CT-rich Low_complexity Low_complexity 4 107 0 189 74 0 0 chrX 23477802 23477829 -139122101 + (TA)n Simple_repeat Simple_repeat 1 27 0 2170 102 7 3 chrX 23477946 23478250 -139121680 - AluSx SINE Alu -7 305 1 791 118 30 7 chrX 23478670 23478805 -139121125 - L1MB8 LINE L1 0 6178 6041 2293 80 7 0 chrX 23479051 23479351 -139120579 + AluSp SINE Alu 1 302 -11 234 182 0 0 chrX 23479462 23479506 -139120424 - L1MC4 LINE L1 -15 8027 7984 2340 80 0 0 chrX 23479513 23479814 -139120116 + AluY SINE Alu 1 301 -10 2453 191 119 31 chrX 23479815 23481000 -139118930 - L1MC4 LINE L1 -140 7902 6459 736 161 16 0 chrX 23481306 23481430 -139118500 - FLAM_C SINE Alu -7 126 1 2121 108 3 0 chrX 23481430 23481727 -139118203 - AluSq SINE Alu -15 298 1 208 222 12 74 chrX 23481728 23481809 -139118121 - L3b LINE CR1 -313 1270 1195 1528 167 4 0 chrX 23481819 23482076 -139117854 + AluJo SINE Alu 1 258 -54 239 339 75 17 chrX 23482149 23482323 -139117607 + L2 LINE L2 1527 1710 -1604 2061 87 31 0 chrX 23482324 23482610 -139117320 + AluSx SINE Alu 1 295 -17 1148 141 0 0 chrX 23482610 23482787 -139117143 + AluSg/x SINE Alu 132 308 -2 307 349 169 0 chrX 23482925 23483186 -139116744 + L2 LINE L2 1848 2152 -1162 181 57 57 0 chrX 23483208 23483243 -139116687 + T-rich Low_complexity Low_complexity 3 39 0 2120 72 0 4 chrX 23483250 23483527 -139116403 - AluSq SINE Alu -37 276 1 35 56 0 34 chrX 23483532 23483621 -139116309 + AT_rich Low_complexity Low_complexity 1 86 0 1943 115 7 3 chrX 23483622 23483908 -139116022 - AluJo SINE Alu -25 287 1 263 176 88 55 chrX 23483911 23483948 -139115982 - L1MB3 LINE L1 0 6183 6149 2087 131 0 0 chrX 23483948 23484254 -139115676 - AluSx SINE Alu -6 306 1 263 176 88 55 chrX 23484254 23484307 -139115623 - L1MB3 LINE L1 -34 6149 6090 282 359 39 44 chrX 23484368 23484491 -139115439 + L2 LINE L2 2173 2296 -1018 1489 178 10 20 chrX 23484491 23484655 -139115275 - AluJo SINE Alu -13 299 138 1831 148 3 3 chrX 23484655 23484953 -139114977 - AluJb SINE Alu -14 298 1 1489 178 10 20 chrX 23484953 23485086 -139114844 - AluJo SINE Alu -174 138 5 282 359 39 44 chrX 23485086 23485143 -139114787 + L2 LINE L2 2296 2352 -962 1742 184 7 3 chrX 23485153 23485462 -139114468 - AluJo SINE Alu -2 310 1 2168 62 48 0 chrX 23485819 23486108 -139113822 - AluSc SINE Alu -6 303 1 270 222 32 0 chrX 23486128 23486191 -139113739 + MIR SINE MIR 184 248 -14 223 265 20 88 chrX 23486451 23486553 -139113377 + MIR3 SINE MIR 112 206 -2 2308 91 0 0 chrX 23486864 23487161 -139112769 - AluSq SINE Alu -16 297 1 345 260 114 24 chrX 23487179 23487302 -139112628 + HAL1b LINE L1 1191 1324 -24 451 211 26 0 chrX 23487906 23487982 -139111948 - MER2 DNA MER2_type 0 345 268 1987 112 3 7 chrX 23488050 23488359 -139111571 + AluSx SINE Alu 1 308 0 675 148 0 0 chrX 23488369 23488470 -139111460 - AluJb SINE Alu -194 118 18 1154 147 0 49 chrX 23488478 23488682 -139111248 - MER2 DNA MER2_type -146 199 6 * 2010 207 25 18 chrX 23488678 23489127 -139110803 - MLT1C LTR MaLR -15 452 1 2390 41 10 0 chrX 23489310 23489601 -139110329 + AluY SINE Alu 1 294 -17 2035 93 107 19 chrX 23489636 23489946 -139109984 + MER1B DNA MER1_type 1 337 0 1853 141 7 0 chrX 23490158 23490455 -139109475 - AluSx SINE Alu -13 299 1 2472 56 0 3 chrX 23490514 23490819 -139109111 - AluY SINE Alu -7 304 1 614 276 40 48 chrX 23491104 23491332 -139108598 + MIR SINE MIR 16 241 -21 2088 118 0 0 chrX 23491340 23491637 -139108293 - AluSx SINE Alu -15 297 1 24 0 0 0 chrX 23491641 23491665 -139108265 + AT_rich Low_complexity Low_complexity 1 24 0 190 393 54 29 chrX 23491905 23492147 -139107783 + L2 LINE L2 2539 2786 -528 1838 134 3 13 chrX 23492155 23492289 -139107641 + AluJb SINE Alu 3 137 -175 1986 120 3 7 chrX 23492289 23492590 -139107340 + AluSg SINE Alu 1 300 -10 1838 134 3 13 chrX 23492590 23492753 -139107177 + AluJb SINE Alu 137 297 -15 934 123 175 76 chrX 23492958 23493169 -139106761 + MER46A DNA MER2_type 2 233 -3 505 184 194 0 chrX 23493493 23493596 -139106334 - L2 LINE L2 -3 3310 3188 447 291 82 19 chrX 23493614 23493772 -139106158 - L2 LINE L2 -1 3312 3145 340 293 75 42 chrX 23493778 23493990 -139105940 - MER20 DNA MER1_type 0 219 1 1591 169 35 17 chrX 23494530 23494820 -139105110 + AluJb SINE Alu 3 297 -15 1201 116 145 5 chrX 23494856 23495063 -139104867 - MER46A DNA MER2_type 0 236 1 1505 176 7 23 chrX 23495387 23495693 -139104237 - AluJo SINE Alu -11 301 1 213 248 72 96 chrX 23495693 23495818 -139104112 + L2 LINE L2 3145 3266 -6 213 39 0 0 chrX 23495869 23495895 -139104035 + (T)n Simple_repeat Simple_repeat 1 26 0 1601 133 0 12 chrX 23495898 23496147 -139103783 - AluSx SINE Alu -66 246 1 367 177 81 50 chrX 23496330 23496520 -139103410 - L1MC5 LINE L1 -30 7931 7696 2085 116 0 0 chrX 23496522 23496823 -139103107 + AluSx SINE Alu 1 301 -11 692 106 0 19 chrX 23496828 23496932 -139102998 + L1MB8 LINE L1 6077 6178 0 2223 98 0 16 chrX 23497018 23497325 -139102605 - AluSq SINE Alu -11 302 1 475 245 89 49 chrX 23497336 23498029 -139101901 - L1MC5 LINE L1 -438 7532 6992 1835 153 0 10 chrX 23498092 23498406 -139101524 - AluSx SINE Alu -1 311 1 876 169 6 44 chrX 23498408 23498591 -139101339 - AluJb SINE Alu -3 309 134 1646 133 92 0 chrX 23498591 23498862 -139101068 - AluSq SINE Alu -8 305 10 1377 232 60 6 chrX 23498877 23499226 -139100704 - L1MC4 LINE L1 -975 7067 6700 1812 147 0 10 chrX 23499252 23499544 -139100386 + AluSx SINE Alu 1 289 -23 2175 112 0 0 chrX 23500029 23500332 -139099598 - AluSq SINE Alu -10 303 1 1307 229 104 54 chrX 23500414 23500882 -139099048 - L1MC4 LINE L1 0 8042 7540 2417 70 3 6 chrX 23500882 23501196 -139098734 - AluSp SINE Alu 0 313 1 1307 229 104 54 chrX 23501196 23501285 -139098645 - L1MC4 LINE L1 -502 7540 7457 21 36 0 0 chrX 23501570 23501598 -139098332 + AT_rich Low_complexity Low_complexity 1 28 0 2072 82 7 14 chrX 23501673 23501986 -139097944 - AluSc SINE Alu 0 311 1 1491 135 13 74 chrX 23502116 23502428 -139097502 - AluJo SINE Alu -19 293 1 2290 83 7 0 chrX 23502862 23503164 -139096766 - AluSp SINE Alu -9 304 1 2211 81 3 7 chrX 23503164 23503459 -139096471 - AluSx SINE Alu -18 294 1 2397 54 0 32 chrX 23504962 23505275 -139094655 + AluY SINE Alu 1 303 -8 2054 79 22 7 chrX 23505824 23506102 -139093828 + AluSc SINE Alu 1 282 -27 216 0 0 0 chrX 23506102 23506126 -139093804 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 699 264 34 53 chrX 23506534 23506799 -139093131 - MIR SINE MIR 0 262 3 1643 133 76 0 chrX 23506891 23507155 -139092775 + AluJo SINE Alu 1 284 -28 385 267 86 65 chrX 23507468 23507807 -139092123 - L1MC/D LINE L1 -321 5800 5443 1524 147 20 65 chrX 23507814 23507967 -139091963 + AluJo SINE Alu 2 137 -175 4587 128 47 42 chrX 23507967 23508089 -139091841 - LTR25 LTR ERV1 0 794 674 1990 85 68 4 chrX 23508089 23508370 -139091560 + AluSp SINE Alu 1 299 -14 4587 128 47 42 chrX 23508370 23509037 -139090893 - LTR25 LTR ERV1 -120 674 1 1524 147 20 65 chrX 23509037 23509175 -139090755 + AluJo SINE Alu 137 280 -32 2255 76 0 0 chrX 23509476 23509766 -139090164 + AluSx SINE Alu 1 290 -22 372 122 84 93 chrX 23510236 23510343 -139089587 - MLT1H1 LTR MaLR -81 474 369 2304 85 0 0 chrX 23510399 23510704 -139089226 - AluSx SINE Alu -7 305 1 2248 105 0 0 chrX 23510728 23511032 -139088898 - AluSg SINE Alu -2 308 5 1707 137 47 4 chrX 23511232 23511510 -139088420 + AluJo SINE Alu 1 290 -22 795 86 0 0 chrX 23511518 23511623 -139088307 + AluSq/x SINE Alu 2 106 -207 1756 153 3 0 chrX 23511623 23511905 -139088025 + AluJb SINE Alu 19 301 -11 692 229 32 54 chrX 23511910 23512173 -139087757 - MIR SINE MIR 0 262 8 2071 99 3 23 chrX 23512336 23512639 -139087291 - AluSx SINE Alu -15 297 1 1809 128 7 7 chrX 23512730 23513020 -139086910 + AluSx SINE Alu 1 290 -22 2263 68 0 0 chrX 23513038 23513316 -139086614 + AluSg SINE Alu 2 279 -31 373 83 14 14 chrX 23513318 23513390 -139086540 + (TA)n Simple_repeat Simple_repeat 2 73 0 479 221 40 34 chrX 23513446 23513595 -139086335 - MER112 DNA MER1_type -101 159 10 236 109 0 22 chrX 23513782 23513828 -139086102 + (CCCCCA)n Simple_repeat Simple_repeat 4 48 0 1925 140 0 7 chrX 23514005 23514312 -139085618 - AluJb SINE Alu -7 305 1 1917 130 0 7 chrX 23514672 23514977 -139084953 - AluJb SINE Alu 0 303 1 360 295 101 16 chrX 23514993 23515122 -139084808 + L2 LINE L2 3133 3272 0 1575 121 71 0 chrX 23515230 23515469 -139084461 + AluSx SINE Alu 1 256 -56 27 0 0 0 chrX 23515475 23515502 -139084428 + AT_rich Low_complexity Low_complexity 1 27 0 441 178 2 0 chrX 23515711 23515794 -139084136 + MER21A LTR ERV1 1 84 -779 3268 136 19 159 chrX 23515889 23516935 -139082995 + MER21A LTR ERV1 70 911 -20 1910 170 0 0 chrX 23516941 23517253 -139082677 - AluJb SINE Alu 0 312 1 213 211 0 0 chrX 23517271 23517328 -139082602 + (TA)n Simple_repeat Simple_repeat 1 57 0 695 134 0 0 chrX 23517358 23517455 -139082475 - AluSx SINE Alu -20 289 193 1158 89 0 0 chrX 23517456 23517602 -139082328 - AluSx SINE Alu -167 146 1 1905 122 7 3 chrX 23518098 23518386 -139081544 - AluSx SINE Alu -23 289 1 2235 89 0 0 chrX 23518405 23518698 -139081232 - AluSp SINE Alu -20 293 1 2273 84 0 0 chrX 23518715 23519011 -139080919 - AluSx SINE Alu -16 296 1 961 189 31 45 chrX 23519161 23519293 -139080637 - MER20 DNA MER1_type 0 219 90 2407 43 0 16 chrX 23519293 23519596 -139080334 - AluY SINE Alu -13 298 1 961 189 31 45 chrX 23519596 23519685 -139080245 - MER20 DNA MER1_type -129 90 1 2245 115 0 0 chrX 23519982 23520287 -139079643 + AluSx SINE Alu 1 305 -7 195 193 250 0 chrX 23520373 23520461 -139079469 + L2 LINE L2 3199 3308 -5 729 157 0 0 chrX 23520579 23520694 -139079236 + FRAM SINE Alu 9 123 -53 1774 158 28 0 chrX 23521135 23521419 -139078511 + AluJb SINE Alu 1 292 -20 670 264 88 42 chrX 23521826 23522065 -139077865 + MIR SINE MIR 10 259 -3 183 42 0 0 chrX 23522787 23522811 -139077119 + (A)n Simple_repeat Simple_repeat 1 24 0 274 219 96 0 chrX 23523703 23523776 -139076154 - L2 LINE L2 -44 3269 3190 2258 110 0 3 chrX 23523824 23524123 -139075807 + AluSx SINE Alu 1 298 -14 2406 59 7 23 chrX 23524559 23524864 -139075066 - AluY SINE Alu -11 300 1 243 167 0 125 chrX 23525465 23525537 -139074393 - U2 snRNA snRNA -125 63 1 180 0 0 0 chrX 23525748 23525768 -139074162 + (TA)n Simple_repeat Simple_repeat 1 20 0 923 136 0 27 chrX 23525777 23525924 -139074006 - FLAM_C SINE Alu 0 143 1 210 71 0 0 chrX 23526356 23526384 -139073546 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 43 0 21 chrX 23526538 23526563 -139073367 + AT_rich Low_complexity Low_complexity 1 26 -20 2124 138 0 0 chrX 23526563 23526860 -139073070 - AluJb SINE Alu -15 297 1 22 43 0 21 chrX 23526860 23526881 -139073049 + AT_rich Low_complexity Low_complexity 26 46 0 1815 125 38 79 chrX 23527045 23527364 -139072566 + L1MB8 LINE L1 5803 6133 -45 2460 52 7 13 chrX 23527364 23527670 -139072260 - AluY SINE Alu -7 304 1 1635 153 0 75 chrX 23527675 23528009 -139071921 - AluJo SINE Alu -3 309 1 1815 125 38 79 chrX 23528009 23528075 -139071855 + L1MB8 LINE L1 6137 6178 0 501 301 33 11 chrX 23528352 23528535 -139071395 + MIR3 SINE MIR 16 202 -6 2123 94 0 21 chrX 23528611 23528921 -139071009 - AluSc SINE Alu 0 304 1 2084 114 38 3 chrX 23528926 23529215 -139070715 - AluSx SINE Alu -13 299 1 1834 161 0 13 chrX 23529661 23529965 -139069965 - AluJo SINE Alu -12 300 1 2370 91 0 0 chrX 23529974 23530270 -139069660 - AluSx SINE Alu -16 296 1 434 191 0 91 chrX 23530298 23530327 -139069603 - Tigger5 DNA MER2_type 0 2323 2293 2198 117 20 0 chrX 23530327 23530627 -139069303 - AluSx SINE Alu -6 306 1 434 191 0 91 chrX 23530627 23530707 -139069223 - Tigger5 DNA MER2_type -30 2293 2224 311 184 0 0 chrX 23530701 23530750 -139069180 - Tigger5 DNA MER2_type -2268 55 7 * 248 274 176 0 chrX 23530805 23530907 -139069023 - L1ME LINE L1 -392 5729 5610 1287 131 103 0 chrX 23531072 23531286 -139068644 - MER46A DNA MER2_type 0 236 1 1064 171 42 26 chrX 23531570 23531763 -139068167 + AluJo SINE Alu 86 281 -31 1976 158 0 3 chrX 23531810 23532107 -139067823 - AluJb SINE Alu -16 296 1 22 35 0 0 chrX 23532107 23532136 -139067794 + AT_rich Low_complexity Low_complexity 1 29 0 2379 75 3 26 chrX 23532448 23532756 -139067174 - AluSp SINE Alu -12 301 1 426 231 90 34 chrX 23532830 23533045 -139066885 - L1ME LINE L1 -509 5612 5372 22 56 0 0 chrX 23533047 23533083 -139066847 + AT_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chrX 23533906 23533956 -139065974 + AT_rich Low_complexity Low_complexity 1 50 0 439 192 0 0 chrX 23534559 23534637 -139065293 - MER112 DNA MER1_type -175 85 8 2282 99 0 10 chrX 23534831 23535135 -139064795 - AluSx SINE Alu -11 301 1 2285 72 7 0 chrX 23536327 23536603 -139063327 - AluSc SINE Alu -9 300 23 1728 210 60 7 chrX 23537175 23537608 -139062322 - Charlie4a DNA MER1_type -27 481 26 2246 100 0 25 chrX 23538651 23538971 -139060959 - AluSx SINE Alu 0 312 1 2332 79 0 26 chrX 23539382 23539687 -139060243 + AluSg SINE Alu 1 297 -13 186 143 0 0 chrX 23540938 23540973 -139058957 + (CAG)n Simple_repeat Simple_repeat 3 37 0 881 173 69 0 chrX 23541465 23541667 -139058263 - L1MA7 LINE L1 -2 6289 6074 324 126 34 193 chrX 23541668 23541787 -139058143 + L1MA7 LINE L1 5976 6075 -216 21 0 0 0 chrX 23541965 23541986 -139057944 + AT_rich Low_complexity Low_complexity 1 21 0 1428 73 11 0 chrX 23542777 23542956 -139056974 - AluSg SINE Alu 0 312 132 421 59 0 0 chrX 23542956 23543007 -139056923 - AluSg SINE Alu -245 64 14 2634 72 62 13 chrX 23543077 23543100 -139056830 - L1MA3 LINE L1 -7 6298 6278 264 100 0 0 chrX 23543100 23543140 -139056790 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 2634 72 62 13 chrX 23543140 23543504 -139056426 - L1MA3 LINE L1 -27 6278 5892 207 254 0 0 chrX 23544553 23544608 -139055322 - MER5B DNA MER1_type -4 174 120 2262 110 0 0 chrX 23544609 23544909 -139055021 + AluSx SINE Alu 3 302 -10 2194 110 0 10 chrX 23544967 23545266 -139054664 - AluSg SINE Alu -14 296 1 489 299 7 14 chrX 23545370 23545517 -139054413 + MIR SINE MIR 11 156 -106 592 235 69 9 chrX 23545538 23545709 -139054221 + MLT1F LTR MaLR 70 229 -338 1952 170 38 32 chrX 23545719 23547285 -139052645 - L1MB7 LINE L1 0 6180 4957 386 200 90 0 chrX 23547288 23547388 -139052542 - L2 LINE L2 -16 3297 3189 6080 113 41 22 chrX 23547795 23548746 -139051184 + LTR5 LTR ERVK 1 969 0 1287 246 24 3 chrX 23548988 23549281 -139050649 + MLT1F LTR MaLR 190 488 -54 1100 234 11 0 chrX 23549292 23549553 -139050377 - L1MB7 LINE L1 -12 6172 5909 455 182 23 0 chrX 23549593 23549681 -139050249 + L1M4 LINE L1 5629 5718 -466 22 0 0 0 chrX 23550723 23550745 -139049185 + AT_rich Low_complexity Low_complexity 1 22 0 861 167 0 0 chrX 23550752 23550890 -139049040 - FLAM_C SINE Alu -5 138 1 2312 43 47 0 chrX 23550982 23551261 -139048669 - AluY SINE Alu -4 307 16 2237 129 0 0 chrX 23551320 23551623 -139048307 - AluJb SINE Alu -9 303 1 2191 120 0 0 chrX 23552598 23552889 -139047041 - AluSg SINE Alu -19 291 1 318 340 93 19 chrX 23553107 23553269 -139046661 + HERVL40 LTR ERVL 3509 3682 -1848 2294 100 0 3 chrX 23553736 23554035 -139045895 - AluSq SINE Alu -15 298 1 519 139 0 0 chrX 23556667 23556753 -139043177 + L1MA4 LINE L1 6215 6300 0 20707 73 6 0 chrX 23556776 23559427 -139040503 + L1P LINE L1 1 2665 -3481 744 33 0 0 chrX 23559427 23559518 -139040412 + L1P LINE L1 2873 2963 -3183 1731 63 5 18 chrX 23559742 23559963 -139039967 - AluSc SINE Alu -20 289 72 306 0 0 0 chrX 23559963 23559997 -139039933 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2276 84 3 3 chrX 23559997 23560283 -139039647 - AluSp SINE Alu -27 286 1 383 206 28 28 chrX 23560293 23560400 -139039530 + MIR3 SINE MIR 51 157 -51 2456 82 0 0 chrX 23560689 23560992 -139038938 + AluSx SINE Alu 1 303 -9 180 0 0 0 chrX 23561151 23561171 -139038759 + (TG)n Simple_repeat Simple_repeat 1 20 0 2073 126 3 0 chrX 23561171 23561451 -139038479 - AluSx SINE Alu -31 281 1 1714 131 75 11 chrX 23561482 23561749 -139038181 + AluJo SINE Alu 1 284 -28 547 268 31 55 chrX 23562047 23562301 -139037629 - MIR SINE MIR 0 262 15 2491 80 0 0 chrX 23562404 23562704 -139037226 + AluSg1 SINE Alu 1 300 -9 899 338 20 27 chrX 23563147 23563550 -139036380 + L1PA13 LINE L1 39 438 -6349 1403 144 39 0 chrX 23563791 23564020 -139035910 + MSTA LTR MaLR 1 238 -190 1774 48 0 0 chrX 23564020 23564228 -139035702 - THE1-int LTR MaLR -1142 438 231 4043 161 52 13 chrX 23564334 23565098 -139034832 - L1M2b LINE L1 -6374 835 42 1202 271 37 9 chrX 23565886 23566214 -139033716 + L1M2 LINE L1 850 1186 -5663 585 314 13 0 chrX 23566220 23566379 -139033551 - REP3 LTR ERV -376 186 26 1199 230 7 4 chrX 23566847 23567121 -139032809 + L1M2 LINE L1 3262 3536 -3312 8007 167 34 5 chrX 23567238 23568019 -139031911 + L1M2 LINE L1 4155 4912 -1936 192 77 0 0 chrX 23568019 23568045 -139031885 + (CA)n Simple_repeat Simple_repeat 1 26 0 8007 167 34 5 chrX 23568045 23568817 -139031113 + L1M2 LINE L1 4912 5752 -1096 1886 122 3 64 chrX 23569168 23569480 -139030450 - AluSx SINE Alu -19 293 1 414 153 0 0 chrX 23571842 23571901 -139028029 - Alu SINE Alu -18 292 234 686 184 47 80 chrX 23571938 23572163 -139027767 - MLT1C LTR MaLR 0 467 201 2351 72 0 14 chrX 23572535 23572826 -139027104 - AluSx SINE Alu -9 303 17 2146 110 3 7 chrX 23573836 23574135 -139025795 - AluSx SINE Alu -12 300 3 3768 143 7 3 chrX 23574605 23575173 -139024757 - L1PB3 LINE L1 -2 6152 5583 851 130 0 0 chrX 23575629 23575767 -139024163 + L1 LINE L1 4695 4832 -1314 2918 125 55 11 chrX 23575817 23576273 -139023657 + L1PA15 LINE L1 5687 6162 -3 2165 238 85 17 chrX 23576274 23577101 -139022829 + L1M4 LINE L1 2786 3668 -2478 1241 212 39 4 chrX 23577614 23577845 -139022085 + MER8 DNA MER2_type 1 239 0 1778 146 14 31 chrX 23578630 23578924 -139021006 - AluJo SINE Alu -23 289 1 1427 99 28 28 chrX 23582143 23582354 -139017576 + AluSg/x SINE Alu 85 295 -17 2293 149 6 8 chrX 23582355 23582717 -139017213 - MSTA LTR MaLR -67 361 1 2748 138 11 42 chrX 23582717 23582945 -139016985 - L1PB4 LINE L1 -21 6135 5928 2229 116 0 0 chrX 23582945 23583239 -139016691 + AluSg SINE Alu 1 294 -16 2748 138 11 42 chrX 23583239 23583488 -139016442 - L1PB4 LINE L1 -228 5928 5673 196 288 25 50 chrX 23583612 23583692 -139016238 - MER5B DNA MER1_type -98 80 3 2331 73 0 17 chrX 23584888 23585189 -139014741 - AluY SINE Alu -15 296 1 777 175 0 0 chrX 23585200 23585320 -139014610 - L1PB4 LINE L1 -8 6148 6029 36059 49 3 3 chrX 23585420 23590641 -139009289 + L1PA5 LINE L1 933 6148 -6 300 281 21 0 chrX 23590742 23590838 -139009092 - L1ME LINE L1 -278 5843 5746 2505 53 0 3 chrX 23591257 23591557 -139008373 + AluY SINE Alu 1 299 -12 859 138 31 0 chrX 23591570 23591700 -139008230 + AluJb SINE Alu 164 297 -15 438 92 15 0 chrX 23591704 23591769 -139008161 + L1PA16 LINE L1 6083 6148 -18 496 122 0 0 chrX 23591784 23591858 -139008072 + L1PB4 LINE L1 6078 6151 -5 3949 36 0 0 chrX 23592411 23592854 -139007076 - L1PA5 LINE L1 -4 6150 5708 1950 162 0 3 chrX 23593239 23593529 -139006401 + AluJb SINE Alu 1 289 -23 1083 270 20 20 chrX 23595714 23596010 -139003920 - REP3 LTR ERV -266 296 1 5090 148 40 15 chrX 23596675 23597412 -139002518 + L1MA9 LINE L1 5407 6171 -141 240 35 0 0 chrX 23597412 23597441 -139002489 + (CA)n Simple_repeat Simple_repeat 2 30 0 5090 148 40 15 chrX 23597441 23597579 -139002351 + L1MA9 LINE L1 6171 6304 -8 1951 143 43 70 chrX 23597986 23598384 -139001546 + MLT1B LTR MaLR 1 387 -3 960 133 78 0 chrX 23598531 23598697 -139001233 + L1MA9 LINE L1 5917 6095 -217 2471 72 0 16 chrX 23599691 23599997 -138999933 + AluSp SINE Alu 1 301 -12 19539 43 2 0 chrX 23601053 23604089 -138995841 - L1PA5 LINE L1 -6 6148 3111 1353 126 0 0 chrX 23604191 23604389 -138995541 - L1P4 LINE L1 -399 5767 5570 301 91 0 0 chrX 23604390 23604434 -138995496 + L1MA1 LINE L1 6153 6196 -106 3823 159 11 37 chrX 23605106 23605267 -138994663 - L1MA4A LINE L1 -24 6279 6115 2317 88 7 0 chrX 23605267 23605563 -138994367 - AluSg SINE Alu -12 298 1 3823 159 11 37 chrX 23605563 23606214 -138993716 - L1MA4A LINE L1 -188 6115 5427 1689 130 78 82 chrX 23606214 23606628 -138993302 + THE1B LTR MaLR 1 389 -39 2186 115 0 3 chrX 23606628 23606924 -138993006 - AluSx SINE Alu -17 295 1 1689 130 78 82 chrX 23606924 23606964 -138992966 + THE1B LTR MaLR 389 428 0 1660 137 31 0 chrX 23606964 23607346 -138992584 - L1M1 LINE L1 -743 5403 5042 297 367 48 5 chrX 23607525 23607732 -138992198 + MIR SINE MIR 19 234 -28 180 286 82 0 chrX 23608571 23608620 -138991310 - L2 LINE L2 -253 3060 3008 2171 102 3 3 chrX 23609083 23609398 -138990532 + AluSx SINE Alu 1 315 0 637 53 11 21 chrX 23609811 23609906 -138990024 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 506 179 42 11 chrX 23609909 23610004 -138989926 - MLT1B LTR MaLR -46 459 362 * 659 136 45 9 chrX 23609999 23610109 -138989821 - MLT1D LTR MaLR -17 488 375 869 85 0 0 chrX 23610116 23610222 -138989708 + AluSq/x SINE Alu 5 110 -203 880 271 9 18 chrX 23610968 23611189 -138988741 + REP3 LTR ERV 1 219 -343 23 0 0 0 chrX 23611443 23611466 -138988464 + AT_rich Low_complexity Low_complexity 1 23 0 380 340 0 7 chrX 23611586 23611733 -138988197 - L1M4c LINE L1 -6176 208 63 814 165 8 0 chrX 23613048 23613181 -138986749 - AluJo SINE Alu -178 134 1 2991 68 3 3 chrX 23614881 23615236 -138984694 - THE1A LTR MaLR 0 355 1 377 276 8 8 chrX 23617720 23617847 -138982083 - L1M4c LINE L1 -6225 159 33 364 299 54 14 chrX 23617882 23618103 -138981827 - Charlie2 DNA MER1_type -2487 295 66 2275 104 3 0 chrX 23618545 23618844 -138981086 - AluSx SINE Alu -12 300 1 1878 159 16 29 chrX 23620062 23620370 -138979560 - AluJo SINE Alu -7 305 2 642 130 19 0 chrX 23620439 23620547 -138979383 - L1MA6 LINE L1 0 6300 6191 1072 195 17 17 chrX 23620989 23621225 -138978705 + MLT1F LTR MaLR 256 491 -51 4044 182 41 5 chrX 23621243 23622325 -138977605 - L1MB7 LINE L1 -41 6143 5025 2014 107 0 40 chrX 23622841 23623141 -138976789 - AluSx SINE Alu -24 288 1 2218 50 0 0 chrX 23623514 23623775 -138976155 - AluY SINE Alu -50 261 1 761 247 34 84 chrX 23625076 23625396 -138974534 - MLT1B LTR MaLR -86 304 1 965 283 14 11 chrX 23626291 23626567 -138973363 + REP3 LTR ERV 26 302 -260 2299 108 0 3 chrX 23627207 23627513 -138972417 + AluSx SINE Alu 1 305 -7 4438 135 23 61 chrX 23627884 23628474 -138971456 - LTR39 LTR ERV1 0 783 230 1846 158 0 3 chrX 23628474 23628796 -138971134 - AluJb SINE Alu 0 321 1 4438 135 23 61 chrX 23628796 23629018 -138970912 - LTR39 LTR ERV1 -553 230 1 2053 120 7 0 chrX 23631325 23631601 -138968329 + AluSc SINE Alu 1 278 -31 345 100 0 0 chrX 23631603 23631653 -138968277 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 257 287 60 46 chrX 23632747 23632851 -138967079 - Charlie2 DNA MER1_type -2516 266 165 2358 85 47 49 chrX 23632851 23633216 -138966714 + THE1B LTR MaLR 1 364 0 257 287 60 46 chrX 23633216 23633327 -138966603 - Charlie2 DNA MER1_type -2617 165 48 1115 181 49 86 chrX 23633907 23634232 -138965698 - MLT1B LTR MaLR 0 390 78 6161 92 33 2 chrX 23637794 23638744 -138961186 + L1MA2 LINE L1 5326 6304 0 8824 158 12 5 chrX 23640572 23642307 -138957623 - L1PB1 LINE L1 -7 6144 4379 549 0 0 0 chrX 23642307 23642368 -138957562 + (TTTTA)n Simple_repeat Simple_repeat 2 62 0 8824 158 12 5 chrX 23642368 23643353 -138956577 - L1PB1 LINE L1 -1772 4379 3402 503 242 8 16 chrX 23643422 23643546 -138956384 - L1ME2 LINE L1 -32 6132 6010 452 116 0 14 chrX 23643692 23643761 -138956169 + AluJ/FRAM SINE Alu 228 295 -17 218 354 44 18 chrX 23643761 23643874 -138956056 + MIR3 SINE MIR 79 194 -14 264 30 0 0 chrX 23644443 23644476 -138955454 + (CA)n Simple_repeat Simple_repeat 1 33 0 437 297 88 52 chrX 23645565 23645814 -138954116 + MLT1I LTR MaLR 114 371 -38 377 182 13 0 chrX 23645920 23645997 -138953933 + MER112 DNA MER1_type 3 80 -180 206 207 17 17 chrX 23645998 23646056 -138953874 + (TA)n Simple_repeat Simple_repeat 1 58 0 379 220 70 86 chrX 23646058 23646244 -138953686 + MER112 DNA MER1_type 78 260 0 232 368 0 0 chrX 23646760 23646847 -138953083 - MIR3 SINE MIR -18 190 104 1044 349 137 30 chrX 23646940 23647722 -138952208 + L2 LINE L2 392 1308 -2006 1633 181 42 25 chrX 23647722 23648081 -138951849 - MLT1A1 LTR MaLR 0 365 1 1044 349 137 30 chrX 23648081 23648309 -138951621 + L2 LINE L2 1308 1510 -1804 5985 104 23 2 chrX 23648464 23649374 -138950556 + L1P LINE L1 1 929 -5217 477 0 0 0 chrX 23649782 23649835 -138950095 + (CA)n Simple_repeat Simple_repeat 2 54 0 1549 181 49 88 chrX 23649868 23650300 -138949630 + MLT1C LTR MaLR 53 467 0 6867 188 88 13 chrX 23650387 23651870 -138948060 + L1M1 LINE L1 22 1616 -5949 14977 158 19 16 chrX 23651884 23652675 -138947255 + L1M1 LINE L1 2652 3439 -4285 2040 123 6 50 chrX 23652675 23652993 -138946937 + AluSx SINE Alu 1 304 -8 14977 158 19 16 chrX 23652993 23655289 -138944641 + L1M1 LINE L1 3439 5766 -1958 2161 95 0 0 chrX 23655289 23655563 -138944367 + AluSc SINE Alu 1 274 -35 14977 158 19 16 chrX 23655563 23656813 -138943117 + L1M1 LINE L1 5766 7010 -714 958 193 5 11 chrX 23656813 23657000 -138942930 + AluJo SINE Alu 121 306 -6 4601 93 10 21 chrX 23657007 23657714 -138942216 + L1MA3 LINE L1 5599 6297 -8 5439 110 28 6 chrX 23657798 23658653 -138941277 + Tigger1 DNA MER2_type 1545 2418 0 5338 159 17 26 chrX 23659213 23659893 -138940037 - L1MA10 LINE L1 -8 6326 5659 2249 89 34 0 chrX 23659893 23660185 -138939745 + AluSx SINE Alu 1 302 -10 5338 159 17 26 chrX 23660185 23660814 -138939116 - L1MA10 LINE L1 -675 5659 5026 340 333 51 88 chrX 23661324 23661675 -138938255 + L2 LINE L2 2511 2848 -466 224 264 179 60 chrX 23661682 23661883 -138938047 + L2 LINE L2 3008 3232 -81 280 211 48 58 chrX 23662993 23663097 -138936833 - L1MA8 LINE L1 -12 6279 6177 * 626 122 73 0 chrX 23663095 23663218 -138936712 + L1MA8 LINE L1 6042 6173 -118 968 285 72 42 chrX 23663301 23663802 -138936128 - LTR33 LTR ERVL -4 517 2 703 184 152 6 chrX 23664026 23664184 -138935746 + MER5A DNA MER1_type 9 189 0 2101 74 0 67 chrX 23664936 23665248 -138934682 + AluSc SINE Alu 1 291 -18 597 173 60 0 chrX 23665490 23665623 -138934307 + LTR16C LTR ERVL 351 491 0 440 219 95 0 chrX 23665760 23665865 -138934065 + L2 LINE L2 3189 3303 -10 1943 171 154 47 chrX 23667228 23667766 -138932164 - LTR4 LTR ERV1 0 596 1 412 141 0 0 chrX 23668800 23668864 -138931066 - Tigger7 DNA MER2_type -28 2559 2496 * 2927 165 37 2 chrX 23668858 23669366 -138930564 - Tigger7 DNA MER2_type -1961 526 1 831 255 99 37 chrX 23669420 23669856 -138930074 + MLT1J LTR MaLR 40 502 -9 4228 152 47 28 chrX 23720476 23720530 -138879400 + L1PB4 LINE L1 5266 5317 -839 2028 131 7 10 chrX 23720530 23720821 -138879109 + AluSx SINE Alu 3 292 -20 4228 152 47 28 chrX 23720821 23721637 -138878293 + L1PB4 LINE L1 5317 6153 -3 774 255 6 0 chrX 23721637 23721794 -138878136 - MIR SINE MIR -99 163 6 2146 179 54 7 chrX 23722197 23722604 -138877326 + MSTB LTR MaLR 1 426 0 2079 176 56 0 chrX 23723403 23723886 -138876044 - L1 LINE L1 -1377 5471 4962 * 3033 204 15 4 chrX 23723882 23723907 -138876023 - L1 LINE L1 -4360 2489 2466 234 0 0 0 chrX 23723907 23723933 -138875997 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3033 204 15 4 chrX 23723933 23724626 -138875304 - L1 LINE L1 -4383 2466 1763 40574 51 3 1 chrX 23724627 23730761 -138869169 - L1PA4 LINE L1 -14 6141 1 4823 236 27 22 chrX 23730766 23731925 -138868005 - L1 LINE L1 -5075 1774 610 225 0 0 0 chrX 23731941 23731966 -138867964 + (CAG)n Simple_repeat Simple_repeat 3 27 0 2092 215 108 14 chrX 23732095 23732611 -138867319 + MLT1F1 LTR MaLR 3 567 0 21 0 0 0 chrX 23732655 23732676 -138867254 + AT_rich Low_complexity Low_complexity 1 21 0 206 374 136 7 chrX 23733155 23733302 -138866628 - L2 LINE L2 0 3272 3107 229 206 0 0 chrX 23733302 23733365 -138866565 + L1M4 LINE L1 5021 5083 -1063 3990 111 8 28 chrX 23733366 23733460 -138866470 + L1PA16 LINE L1 5395 5489 -677 2233 122 3 0 chrX 23733460 23733771 -138866159 + AluSx SINE Alu 1 312 0 3990 111 8 28 chrX 23733771 23734345 -138865585 + L1PA16 LINE L1 5489 6049 -117 668 167 0 0 chrX 23734343 23734457 -138865473 - L1M2 LINE L1 -5390 1459 1346 * 509 90 0 0 chrX 23734462 23734540 -138865390 + L1PA16 LINE L1 6080 6157 -9 696 290 50 5 chrX 23734692 23734892 -138865038 + MER63A DNA MER1_type 2 210 0 10534 163 44 14 chrX 23735273 23737159 -138862771 + L1MA6 LINE L1 18 1960 -5605 2471 132 16 43 chrX 23737159 23737530 -138862400 + MSTB LTR MaLR 1 361 -65 844 138 0 0 chrX 23737530 23737666 -138862264 + FLAM_C SINE Alu 1 136 0 2471 132 16 43 chrX 23737666 23737731 -138862199 + MSTB LTR MaLR 361 426 0 8934 167 29 6 chrX 23737735 23739344 -138860586 + MSTB-int LTR MaLR 5 1651 0 2117 155 39 55 chrX 23739344 23739455 -138860475 + MSTB LTR MaLR 1 112 -314 1139 179 117 68 chrX 23739455 23739884 -138860046 - LTR7 LTR ERV1 0 450 1 2117 155 39 55 chrX 23739884 23739974 -138859956 + MSTB LTR MaLR 112 202 -224 2239 89 0 33 chrX 23739974 23740276 -138859654 + AluY SINE Alu 1 292 -19 2117 155 39 55 chrX 23740276 23740506 -138859424 + MSTB LTR MaLR 202 426 0 8624 180 43 46 chrX 23740506 23743122 -138856808 + L1MA6 LINE L1 1956 4579 -2986 3910 98 5 3 chrX 23743122 23743695 -138856235 + L1PB1 LINE L1 5576 6149 -2 8624 180 43 46 chrX 23743695 23744027 -138855903 + L1MA6 LINE L1 4579 4911 -2654 275 83 0 0 chrX 23744027 23744063 -138855867 + U2 snRNA snRNA 1 36 -152 8624 180 43 46 chrX 23744063 23745217 -138854713 + L1MA6 LINE L1 4911 6098 -1467 5164 106 25 5 chrX 23745224 23746014 -138853916 + L1MA3 LINE L1 5496 6301 -4 231 330 119 34 chrX 23746038 23746156 -138853774 - L2 LINE L2 -16 3256 3129 241 317 98 30 chrX 23746540 23746704 -138853226 + MER5B DNA MER1_type 4 178 0 481 274 20 51 chrX 23747730 23748033 -138851897 - L1MC/D LINE L1 -546 5811 5518 359 313 34 60 chrX 23748067 23748335 -138851595 - L1MC/D LINE L1 -935 5447 5187 405 59 0 0 chrX 23748999 23749050 -138850880 + 5S rRNA rRNA 1 51 -70 1055 130 10 10 chrX 23749104 23749311 -138850619 + L1MA7 LINE L1 6085 6291 0 1666 214 6 18 chrX 23749364 23749696 -138850234 - MLT1H1 LTR MaLR 0 555 228 1247 291 58 6 chrX 23749751 23750161 -138849769 - L1MC/D LINE L1 -2677 3705 3247 2190 137 0 0 chrX 23750161 23750468 -138849462 - AluSg SINE Alu -3 307 1 1247 291 58 6 chrX 23750468 23750709 -138849221 - L1MC/D LINE L1 -3135 3247 3020 5482 163 15 13 chrX 23750738 23752310 -138847620 + L1MA6 LINE L1 6146 7713 -6 1117 243 42 33 chrX 23752340 23752950 -138846980 - L1MC/D LINE L1 -3743 2639 2025 1190 241 89 26 chrX 23752952 23753326 -138846604 - L1MC/D LINE L1 -4480 1904 1494 1505 158 4 0 chrX 23753326 23753604 -138846326 - L1MA4 LINE L1 -5 6295 6017 1190 241 89 26 chrX 23753604 23753690 -138846240 - L1MC/D LINE L1 -4890 1494 1415 5908 140 9 21 chrX 23753715 23754954 -138844976 - L1MA2 LINE L1 0 7723 6500 17981 50 5 3 chrX 23755001 23759153 -138840777 - L1PA4 LINE L1 -5 6150 1843 2796 16 0 0 chrX 23759153 23759464 -138840466 + AluY SINE Alu 1 311 0 17981 50 5 3 chrX 23759464 23759636 -138840294 - L1PA4 LINE L1 -4312 1843 1673 8298 101 16 0 chrX 23759634 23760862 -138839068 - L1PA4 LINE L1 -4896 1250 3 * 6542 187 22 15 chrX 23760862 23761235 -138838695 - L1MA2 LINE L1 -2359 5206 4837 2228 88 0 13 chrX 23761235 23761541 -138838389 + AluY SINE Alu 3 304 -7 6542 187 22 15 chrX 23761541 23763063 -138836867 - L1MA2 LINE L1 -2728 4837 3306 3037 242 53 53 chrX 23763063 23764219 -138835711 - L1M4 LINE L1 -4863 1679 524 227 292 26 35 chrX 23764543 23764656 -138835274 + MIR SINE MIR 54 165 -97 746 209 43 12 chrX 23765486 23765649 -138834281 + MER5A DNA MER1_type 16 183 -6 1768 169 3 17 chrX 23765762 23766064 -138833866 + AluJo SINE Alu 6 303 -9 388 263 69 50 chrX 23768260 23768420 -138831510 + MLT1L LTR MaLR 445 607 -8 2139 141 0 0 chrX 23769549 23769848 -138830082 - AluSx SINE Alu -13 299 1 2393 91 0 0 chrX 23770897 23771206 -138828724 - AluSg SINE Alu -1 309 1 4280 96 8 22 chrX 23771356 23771981 -138827949 - L1MA1 LINE L1 0 6302 5687 7203 65 16 1 chrX 23772084 23773586 -138826344 + L1PA6 LINE L1 4627 6143 -11 412 243 108 0 chrX 23773618 23773729 -138826201 + MER63A DNA MER1_type 88 210 0 1387 230 67 12 chrX 23773729 23774072 -138825858 - L1ME LINE L1 -512 5650 5289 257 329 107 36 chrX 23774147 23774372 -138825558 + MIR SINE MIR 2 242 -20 329 278 179 47 chrX 23774833 23775045 -138824885 + L2 LINE L2 3011 3250 -22 195 100 0 0 chrX 23775210 23775240 -138824690 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrX 23775443 23775465 -138824465 + AT_rich Low_complexity Low_complexity 1 22 0 2395 67 0 3 chrX 23776386 23776686 -138823244 + AluSc SINE Alu 1 299 -10 225 0 0 0 chrX 23776735 23776760 -138823170 + (TA)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chrX 23776803 23776826 -138823104 + (TC)n Simple_repeat Simple_repeat 2 24 0 583 250 26 7 chrX 23777150 23777302 -138822628 + MER5B DNA MER1_type 20 174 -4 428 306 87 29 chrX 23777304 23777546 -138822384 + L2 LINE L2 2499 2754 -560 2177 81 3 11 chrX 23777638 23777952 -138821978 - AluSp SINE Alu 0 312 1 498 224 148 15 chrX 23777957 23778153 -138821777 - L1MD3 LINE L1 -8 7987 7766 479 251 20 126 chrX 23778236 23778331 -138821599 + MER5B DNA MER1_type 1 66 -112 458 254 136 73 chrX 23778331 23778508 -138821422 - MER5A DNA MER1_type -1 188 1 479 251 20 126 chrX 23778508 23778611 -138821319 + MER5B DNA MER1_type 66 178 0 571 304 133 54 chrX 23779015 23779571 -138820359 + L2 LINE L2 1367 1966 -1348 23 33 0 0 chrX 23779658 23779688 -138820242 + AT_rich Low_complexity Low_complexity 1 30 0 276 265 128 0 chrX 23780301 23780403 -138819527 + L2 LINE L2 3198 3312 -1 * 344 372 53 36 chrX 23780399 23780926 -138819004 + L2 LINE L2 1997 2532 -782 512 276 7 26 chrX 23781018 23781170 -138818760 + MER103 DNA DNA 11 159 -7 261 0 0 0 chrX 23781178 23781207 -138818723 + (T)n Simple_repeat Simple_repeat 1 29 0 3361 220 63 33 chrX 23781466 23783245 -138816685 - L1MCb LINE L1 -3529 3035 1044 1896 154 0 13 chrX 23783245 23783543 -138816387 - AluJo SINE Alu -18 294 1 3361 220 63 33 chrX 23783543 23784052 -138815878 - L1MCb LINE L1 -5520 1044 552 428 243 36 21 chrX 23784132 23784272 -138815658 - L1MCb LINE L1 -5493 552 411 380 215 87 60 chrX 23784274 23784423 -138815507 - MIR SINE MIR -108 154 2 2020 187 16 53 chrX 23784550 23785042 -138814888 + MER31A LTR ERV1 12 485 0 979 154 44 11 chrX 23785558 23785740 -138814190 + MER5A DNA MER1_type 1 188 -1 539 199 166 11 chrX 23785830 23785986 -138813944 + MER5A DNA MER1_type 6 189 0 345 332 65 8 chrX 23786918 23787099 -138812831 - MIR SINE MIR -55 207 17 552 222 170 20 chrX 23787123 23787276 -138812654 + MER5A DNA MER1_type 9 184 -5 276 323 65 32 chrX 23788199 23788292 -138811638 - L2 LINE L2 -19 3253 3158 189 0 0 0 chrX 23788934 23788955 -138810975 + (A)n Simple_repeat Simple_repeat 1 21 0 405 0 0 0 chrX 23788955 23789000 -138810930 + (TA)n Simple_repeat Simple_repeat 1 45 0 1047 261 32 11 chrX 23789018 23789298 -138810632 + LTR16C LTR ERVL 158 443 -48 237 244 122 37 chrX 23790517 23790599 -138809331 + L3 LINE CR1 1485 1573 -4 1064 113 154 36 chrX 23791128 23791323 -138808607 - MER20 DNA MER1_type -1 218 1 342 213 83 37 chrX 23791404 23791512 -138808418 - MER58C DNA MER1_type -31 184 72 304 237 0 0 chrX 23792129 23792188 -138807742 - L2 LINE L2 -8 3305 3247 294 237 93 72 chrX 23792519 23792658 -138807272 + MIR SINE MIR 3 145 -63 21 0 0 0 chrX 23793728 23793749 -138806181 + AT_rich Low_complexity Low_complexity 1 21 0 522 57 0 0 chrX 23796446 23796516 -138803414 + (CGG)n Simple_repeat Simple_repeat 2 71 0 349 325 132 66 chrX 23796531 23796971 -138802959 + L1M2 LINE L1 563 1031 -5818 22 35 0 0 chrX 23797795 23797824 -138802106 + GC_rich Low_complexity Low_complexity 1 29 0 259 320 0 0 chrX 23798270 23798345 -138801585 + GA-rich Low_complexity Low_complexity 1 75 0 382 114 44 26 chrX 23799664 23799778 -138800152 + GA-rich Low_complexity Low_complexity 2 117 0 309 165 71 0 chrX 23799939 23800024 -138799906 - L1ME4a LINE L1 -4 6117 6027 688 282 95 17 chrX 23800079 23800320 -138799610 + MIR SINE MIR 2 261 -1 2458 197 28 49 chrX 23800358 23800613 -138799317 + MER90 LTR ERV1 59 318 -296 2395 86 7 0 chrX 23800613 23800916 -138799014 + AluSq SINE Alu 1 305 -8 2458 197 28 49 chrX 23800916 23801228 -138798702 + MER90 LTR ERV1 318 614 0 618 269 73 8 chrX 23801257 23801517 -138798413 - L1ME4a LINE L1 -197 5924 5648 24 32 0 0 chrX 23803137 23803168 -138796762 + AT_rich Low_complexity Low_complexity 1 31 0 406 352 66 9 chrX 23804320 23804547 -138795383 - MIR SINE MIR -10 252 13 201 184 0 0 chrX 23804832 23804870 -138795060 - MIR3 SINE MIR -48 160 123 230 250 130 56 chrX 23805868 23805976 -138793954 - L2 LINE L2 -12 3260 3145 952 304 58 26 chrX 23806242 23806587 -138793343 + LTR16C LTR ERVL 136 491 0 229 121 0 0 chrX 23806647 23806680 -138793250 + L1MB7 LINE L1 6143 6175 -9 452 358 107 36 chrX 23806710 23807149 -138792781 - L2 LINE L2 -338 2976 2507 24 0 0 0 chrX 23810265 23810289 -138789641 + AT_rich Low_complexity Low_complexity 1 24 0 1070 222 42 84 chrX 23811597 23812003 -138787927 + LTR16C LTR ERVL 103 491 0 997 214 11 0 chrX 23813098 23813285 -138786645 + MER5A DNA MER1_type 1 189 0 979 230 49 0 chrX 23813747 23813973 -138785957 - MIR SINE MIR -22 240 4 231 174 0 0 chrX 23814206 23814249 -138785681 - MIR SINE MIR -64 144 101 396 0 0 0 chrX 23815161 23815205 -138784725 + (CA)n Simple_repeat Simple_repeat 2 45 0 396 269 97 34 chrX 23816946 23817121 -138782809 - MIR SINE MIR -46 216 31 2314 40 40 17 chrX 23817199 23817496 -138782434 + AluY SINE Alu 1 304 -7 296 270 22 130 chrX 23817789 23817974 -138781956 + MIR3 SINE MIR 42 206 -2 252 0 0 0 chrX 23818472 23818500 -138781430 + (T)n Simple_repeat Simple_repeat 1 28 0 531 244 59 0 chrX 23818653 23818788 -138781142 + LTR16C LTR ERVL 301 443 -48 218 339 0 17 chrX 23820214 23820273 -138779657 + MIR3 SINE MIR 13 70 -138 486 337 73 44 chrX 23820469 23820813 -138779117 + L2 LINE L2 2942 3295 -18 1106 254 32 44 chrX 23821207 23821545 -138778385 + LTR16C LTR ERVL 158 491 0 193 254 109 0 chrX 23821564 23821619 -138778311 + MIR SINE MIR 120 180 -82 441 165 13 13 chrX 23821654 23821733 -138778197 - MER116 DNA Mariner 0 80 2 794 225 13 53 chrX 23822482 23822709 -138777221 + MIR SINE MIR 34 251 -11 643 311 24 5 chrX 23823103 23823309 -138776621 - MIR SINE MIR -6 256 47 321 171 92 13 chrX 23823697 23823773 -138776157 - AluSp/q SINE Alu -3 300 219 2062 104 0 4 chrX 23823887 23824157 -138775773 - AluSq SINE Alu -44 269 1 463 200 61 17 chrX 23824342 23824457 -138775473 + L2 LINE L2 3189 3308 -5 22 56 0 0 chrX 23824781 23824817 -138775113 + AT_rich Low_complexity Low_complexity 1 36 0 647 206 56 0 chrX 23824909 23825035 -138774895 + MER94 DNA DNA 1 133 -1 221 328 90 0 chrX 23825715 23825837 -138774093 - L2 LINE L2 0 3313 3181 288 0 0 0 chrX 23825984 23826016 -138773914 + (TG)n Simple_repeat Simple_repeat 2 33 0 217 288 50 25 chrX 23826153 23826233 -138773697 - L2 LINE L2 -75 3197 3116 359 347 49 60 chrX 23826441 23826944 -138772986 - L2 LINE L2 -189 3083 2574 1600 242 88 13 chrX 23827247 23827702 -138772228 + LTR16C LTR ERVL 1 489 -2 396 0 0 0 chrX 23828688 23828732 -138771198 + (TG)n Simple_repeat Simple_repeat 2 45 0 2199 228 31 23 chrX 23828744 23829330 -138770600 - L1ME3 LINE L1 -5 6157 5560 * 33834 87 9 8 chrX 23829318 23833960 -138765970 + L1P LINE L1 11 4658 -1488 1734 69 0 30 chrX 23834080 23834312 -138765618 - L1M1 LINE L1 -591 5711 5487 505 226 0 0 chrX 23835932 23836016 -138763914 - MER63 DNA MER1_type 0 1062 979 1172 271 92 45 chrX 23836484 23836953 -138762977 + LTR16C LTR ERVL 1 491 0 1114 181 0 15 chrX 23837468 23837673 -138762257 - L1M4 LINE L1 -451 5733 5532 2827 129 0 63 chrX 23839240 23839728 -138760202 - MLT1C LTR MaLR 0 467 11 1762 126 26 4 chrX 23841135 23841404 -138758526 + AluSx SINE Alu 1 275 -37 936 69 15 0 chrX 23841517 23841648 -138758282 + L1MA7 LINE L1 6158 6290 -1 29 0 0 0 chrX 23842889 23842918 -138757012 + AT_rich Low_complexity Low_complexity 1 29 0 1591 180 27 20 chrX 23843054 23843349 -138756581 + AluJo SINE Alu 1 297 -15 330 26 0 0 chrX 23844273 23844312 -138755618 + (CA)n Simple_repeat Simple_repeat 1 39 0 223 88 18 53 chrX 23844731 23844788 -138755142 + (CCCCCA)n Simple_repeat Simple_repeat 1 55 0 192 40 0 0 chrX 23846080 23846105 -138753825 + (GA)n Simple_repeat Simple_repeat 1 25 0 404 322 20 0 chrX 23846753 23846905 -138753025 + (TATG)n Simple_repeat Simple_repeat 4 158 0 2142 70 37 0 chrX 23847226 23847345 -138752585 + AluY SINE Alu 2 115 -201 315 0 0 0 chrX 23847345 23847380 -138752550 + (CA)n Simple_repeat Simple_repeat 2 36 0 2142 70 37 0 chrX 23847380 23847565 -138752365 + AluY SINE Alu 115 316 0 2109 91 21 11 chrX 23847916 23848203 -138751727 - AluSc SINE Alu -19 290 1 254 106 21 0 chrX 23848708 23848755 -138751175 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 296 329 103 34 chrX 23849097 23849243 -138750687 + MIR3 SINE MIR 2 157 -51 267 292 148 68 chrX 23849987 23850223 -138749707 - L3 LINE CR1 -60 1517 1263 454 250 17 42 chrX 23850287 23850407 -138749523 + L2 LINE L2 3189 3305 -8 310 106 0 0 chrX 23850418 23850465 -138749465 - MIR SINE MIR -105 157 111 223 168 0 109 chrX 23850832 23850933 -138748997 + A-rich Low_complexity Low_complexity 2 91 0 22 56 0 0 chrX 23851550 23851586 -138748344 + AT_rich Low_complexity Low_complexity 1 36 0 305 289 21 31 chrX 23852484 23852581 -138747349 + MIR3 SINE MIR 79 174 -34 441 36 0 0 chrX 23853952 23854007 -138745923 + (TG)n Simple_repeat Simple_repeat 1 55 0 201 74 0 0 chrX 23854074 23854101 -138745829 + (T)n Simple_repeat Simple_repeat 1 27 0 856 182 0 0 chrX 23856195 23856370 -138743560 + FLAM_C SINE Alu 2 176 0 1050 159 0 0 chrX 23856380 23856543 -138743387 + FRAM SINE Alu 1 160 -16 192 40 0 0 chrX 23858048 23858073 -138741857 + (T)n Simple_repeat Simple_repeat 1 25 0 2193 103 0 13 chrX 23859558 23859858 -138740072 - AluSx SINE Alu -16 296 1 217 199 70 39 chrX 23862415 23862571 -138737359 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 253 287 148 9 chrX 23863742 23863857 -138736073 - L2 LINE L2 -6 3307 3177 237 283 69 123 chrX 23863860 23864136 -138735794 - L2 LINE L2 -1 3271 3011 302 272 124 63 chrX 23864594 23864973 -138734957 - MLT1J LTR MaLR 0 511 110 186 143 0 0 chrX 23865046 23865081 -138734849 + (TG)n Simple_repeat Simple_repeat 2 36 0 2448 64 7 3 chrX 23865888 23866186 -138733744 + AluSp SINE Alu 1 299 -14 1900 60 21 0 chrX 23866328 23866563 -138733367 - L1MA1 LINE L1 -8 6294 6055 2266 199 31 8 chrX 23866834 23867316 -138732614 - Charlie4a DNA MER1_type 0 508 16 913 292 94 45 chrX 23868089 23868557 -138731373 - L2 LINE L2 -219 3094 2577 1920 166 61 33 chrX 23868557 23868918 -138731012 - MLT1A2 LTR MaLR 0 374 4 913 292 94 45 chrX 23868918 23869049 -138730881 - L2 LINE L2 -736 2577 2454 212 316 146 28 chrX 23869287 23869499 -138730431 + MIR SINE MIR 12 248 -14 2267 98 0 10 chrX 23869515 23869859 -138730071 - AluSx SINE Alu 0 312 1 285 263 115 21 chrX 23869966 23870089 -138729841 - MER5B DNA MER1_type -3 175 61 887 122 64 6 chrX 23870091 23870247 -138729683 - Charlie1 DNA MER1_type -178 2583 2419 292 209 0 15 chrX 23870268 23870335 -138729595 + MER5B DNA MER1_type 113 178 0 235 278 0 0 chrX 23870475 23870529 -138729401 - MIR SINE MIR -3 259 206 435 227 209 0 chrX 23870764 23870874 -138729056 + L2 LINE L2 3134 3266 -6 2174 113 10 3 chrX 23871518 23871819 -138728111 + AluSx SINE Alu 1 303 -9 1500 275 15 10 chrX 23871883 23872272 -138727658 - LTR16C LTR ERVL -10 481 91 2355 135 0 6 chrX 23874060 23874416 -138725514 - MER47A DNA MER2_type 0 366 13 558 256 161 22 chrX 23874653 23874927 -138725003 - LTR50 LTR ERVL 0 795 484 502 195 55 47 chrX 23875153 23875281 -138724649 - LTR50 LTR ERVL -650 145 17 2405 74 0 0 chrX 23875564 23875860 -138724070 - AluSx SINE Alu -16 296 1 187 345 138 14 chrX 23877123 23877268 -138722662 + L2 LINE L2 3102 3264 -8 * 280 259 58 58 chrX 23877242 23877381 -138722549 + MIR SINE MIR 114 252 -10 252 200 178 33 chrX 23877787 23877877 -138722053 + L2 LINE L2 3169 3271 -42 866 300 29 47 chrX 23877881 23878264 -138721666 + MLT1H LTR MaLR 3 378 -171 193 176 0 0 chrX 23878399 23878433 -138721497 + L2 LINE L2 3280 3313 0 195 347 0 14 chrX 23878519 23878591 -138721339 + MIR3 SINE MIR 3 73 -135 431 320 37 33 chrX 23879702 23879946 -138719984 + MIR SINE MIR 6 250 -12 44 35 0 0 chrX 23881527 23881585 -138718345 + AT_rich Low_complexity Low_complexity 1 58 0 2271 101 0 3 chrX 23881819 23882117 -138717813 - AluSg SINE Alu -13 297 1 185 128 0 26 chrX 23883459 23883498 -138716432 + (TTA)n Simple_repeat Simple_repeat 1 38 0 183 42 0 0 chrX 23883669 23883693 -138716237 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 622 263 41 18 chrX 23884198 23884369 -138715561 - MLT1J2 LTR MaLR 0 450 276 550 195 172 8 chrX 23884365 23884493 -138715437 - MLT1J2 LTR MaLR -296 154 6 * 212 339 0 0 chrX 23884938 23885000 -138714930 + L3 LINE CR1 1115 1176 -401 * 814 284 159 29 chrX 23884996 23885569 -138714361 - L2 LINE L2 -2 3311 2647 555 268 181 45 chrX 23885871 23886207 -138713723 + MLT1J LTR MaLR 111 492 -19 244 285 76 35 chrX 23886341 23886485 -138713445 + L2 LINE L2 3042 3191 -122 350 219 24 0 chrX 23887142 23887224 -138712706 - MLT1H1 LTR MaLR -2 553 470 234 304 0 0 chrX 23887236 23887305 -138712625 + MIR SINE MIR 186 254 -8 213 39 0 0 chrX 23887672 23887698 -138712232 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 387 115 10 83 chrX 23888525 23888621 -138711309 + Charlie7 DNA MER1_type 45 133 -2479 354 114 267 48 chrX 23888628 23888733 -138711197 + MER53 DNA DNA 1 128 -61 817 206 82 113 chrX 23888885 23889346 -138710584 + Charlie7 DNA MER1_type 2166 2612 0 2385 93 0 3 chrX 23889429 23889730 -138710200 - AluSx SINE Alu -12 300 1 719 213 101 11 chrX 23891236 23891424 -138708506 + MER3 DNA MER1_type 5 209 0 460 327 57 65 chrX 23892194 23892591 -138707339 - L2 LINE L2 -1 3312 2900 2344 70 0 0 chrX 23892591 23892898 -138707032 - AluSx SINE Alu 0 307 1 460 327 57 65 chrX 23892898 23893131 -138706799 - L2 LINE L2 -413 2900 2667 269 316 117 54 chrX 23893763 23894079 -138705851 + L2 LINE L2 2937 3272 0 865 223 148 13 chrX 23894314 23894543 -138705387 + MIR SINE MIR 3 262 0 2176 228 67 13 chrX 23894966 23895518 -138704412 - L1ME3A LINE L1 -1 6169 5588 278 246 0 0 chrX 23895525 23895582 -138704348 + MER5B DNA MER1_type 122 178 0 515 231 253 11 chrX 23896254 23896436 -138703494 + MIR SINE MIR 37 262 0 298 349 60 0 chrX 23897118 23897267 -138702663 - MIR SINE MIR -11 251 94 296 330 11 0 chrX 23897984 23898072 -138701858 - L2 LINE L2 0 3313 3225 256 224 53 40 chrX 23898291 23898367 -138701563 + MER5B DNA MER1_type 2 78 -100 641 207 72 42 chrX 23898879 23899072 -138700858 + MIR SINE MIR 64 262 0 296 272 11 11 chrX 23899324 23899416 -138700514 + MER5A DNA MER1_type 3 94 -95 3493 185 88 111 chrX 23900812 23901193 -138698737 - L1MD2 LINE L1 -2 6357 5969 543 160 0 53 chrX 23901193 23901287 -138698643 + FLAM SINE Alu 39 127 -16 3493 185 88 111 chrX 23901287 23901908 -138698022 - L1MD2 LINE L1 -390 5969 5287 3215 171 21 5 chrX 23901908 23902491 -138697439 - L1MB4 LINE L1 0 6180 5589 1484 170 34 19 chrX 23902491 23902931 -138696999 + L1MB7 LINE L1 5082 5528 -650 448 183 0 11 chrX 23902930 23903037 -138696893 - L1MD2 LINE L1 -845 5301 5204 * 6109 97 3 9 chrX 23903052 23903910 -138696020 - L1PA14 LINE L1 -7 6154 5302 892 211 11 22 chrX 23906704 23906889 -138693041 - MER5A DNA MER1_type -6 183 1 408 284 177 0 chrX 23907773 23907914 -138692016 + MER5A DNA MER1_type 9 174 -15 414 0 0 0 chrX 23908583 23908629 -138691301 + (TG)n Simple_repeat Simple_repeat 1 46 0 553 226 14 104 chrX 23908860 23909081 -138690849 - MER102a DNA MER1_type -8 322 122 358 234 194 0 chrX 23911655 23911779 -138688151 + L1ME4a LINE L1 5795 5942 -179 788 188 17 17 chrX 23912518 23912699 -138687231 - MER53 DNA DNA 0 189 9 505 176 19 0 chrX 23912984 23913092 -138686838 - L1MB8 LINE L1 -2 6176 6067 1332 247 22 6 chrX 23913378 23913743 -138686187 + L1MB7 LINE L1 5726 6096 -88 264 316 147 7 chrX 23913996 23914132 -138685798 + MIR SINE MIR 56 210 -52 345 241 154 36 chrX 23915566 23915738 -138684192 + L1ME LINE L1 2418 2617 -3923 1484 162 120 0 chrX 23915738 23916047 -138683883 + MER7A DNA MER2_type 1 344 -2 345 241 154 36 chrX 23916047 23916069 -138683861 + L1ME LINE L1 2617 2635 -3905 227 284 98 48 chrX 23916656 23917075 -138682855 + L1ME LINE L1 4464 4903 -1637 397 290 117 51 chrX 23917263 23917545 -138682385 + L1ME LINE L1 5144 5406 -1152 2038 126 10 10 chrX 23917545 23917839 -138682091 - AluSx SINE Alu -18 294 1 397 290 117 51 chrX 23917839 23918495 -138681435 + L1ME LINE L1 5406 6157 -401 2226 72 61 3 chrX 23918495 23918788 -138681142 + AluSx SINE Alu 1 310 -2 397 290 117 51 chrX 23918788 23918853 -138681077 + L1ME LINE L1 6157 6216 -342 21 0 0 0 chrX 23919894 23919915 -138680015 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 23920297 23920320 -138679610 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chrX 23920415 23920462 -138679468 + AT_rich Low_complexity Low_complexity 1 47 0 264 176 78 0 chrX 23921050 23921101 -138678829 - LTR40a LTR ERVL -365 154 100 243 299 26 26 chrX 23921104 23921221 -138678709 - MER96 DNA MER1_type? -5 170 54 1053 163 22 0 chrX 23921221 23921399 -138678531 - AluJo SINE Alu -9 303 122 22859 161 19 19 chrX 23921402 23925061 -138674869 - L1PA11 LINE L1 -5 7607 3947 2251 109 10 6 chrX 23925061 23925373 -138674557 - AluSq SINE Alu 0 313 1 22859 161 19 19 chrX 23925373 23927827 -138672103 - L1PA11 LINE L1 -3665 3947 143 284 214 0 0 chrX 23927836 23927892 -138672038 + MER96 DNA MER1_type? 120 175 0 * 320 253 152 0 chrX 23927892 23927984 -138671946 - LTR40a LTR ERVL -411 108 2 494 194 0 0 chrX 23928118 23928211 -138671719 + L1ME1 LINE L1 5611 5703 -463 3530 131 5 8 chrX 23928228 23928824 -138671106 - L1MA6 LINE L1 0 6300 5707 1289 146 11 60 chrX 23928824 23929105 -138670825 - L1MA7 LINE L1 -243 6048 5782 537 121 0 0 chrX 23929107 23929190 -138670740 + (TG)n Simple_repeat Simple_repeat 2 84 0 4719 158 18 5 chrX 23929193 23930495 -138669435 - L1MA7 LINE L1 -498 5793 4472 637 201 50 92 chrX 23930495 23930798 -138669132 + L1ME1 LINE L1 5697 5986 -180 605 209 7 20 chrX 23930798 23930951 -138668979 + L1MA10 LINE L1 6181 6331 -3 230 254 136 27 chrX 23932298 23932408 -138667522 - MLT1L LTR MaLR -326 289 168 545 248 93 50 chrX 23932668 23933013 -138666917 + MLT1H LTR MaLR 104 542 -13 283 292 34 11 chrX 23933298 23933387 -138666543 + L2 LINE L2 3223 3313 0 2539 140 19 9 chrX 23933566 23933994 -138665936 + MSTB1 LTR MaLR 1 432 0 268 281 83 16 chrX 23934943 23935135 -138664795 + MLT1I LTR MaLR 50 133 -276 321 268 21 31 chrX 23935499 23935596 -138664334 - MIR SINE MIR -38 224 129 1530 162 3 54 chrX 23935596 23935960 -138663970 - MER4A LTR ERV1 0 664 261 536 152 0 10 chrX 23935960 23936059 -138663871 - MER4A LTR ERV1 -566 98 1 15108 95 45 25 chrX 23936064 23936358 -138663572 - MER4A-int LTR ERV1 -1 6597 6310 2053 108 45 0 chrX 23936358 23936645 -138663285 + AluSg SINE Alu 1 300 -10 15108 95 45 25 chrX 23936645 23938886 -138661044 - MER4A-int LTR ERV1 -288 6310 4012 219 36 0 0 chrX 23938886 23938914 -138661016 + (T)n Simple_repeat Simple_repeat 1 28 0 40987 31 21 1 chrX 23938915 23944945 -138654985 - L1HS LINE L1 0 6155 1 951 108 38 16 chrX 23944945 23945131 -138654799 - MER4A-int LTR ERV1 -2572 4026 3837 * 6746 95 153 111 chrX 23945130 23946361 -138653569 - MER4A-int LTR ERV1 -2917 3681 2503 2050 82 4 8 chrX 23946361 23946629 -138653301 - AluSp SINE Alu 0 313 47 6746 95 153 111 chrX 23946629 23947473 -138652457 - MER4A-int LTR ERV1 -4095 2503 1696 2367 49 0 3 chrX 23947473 23947804 -138652126 + AluY SINE Alu 1 330 0 6746 95 153 111 chrX 23947804 23948997 -138650933 - MER4A-int LTR ERV1 -4902 1696 2 1308 143 0 9 chrX 23949001 23949211 -138650719 - MER4A LTR ERV1 0 664 457 378 342 53 16 chrX 23949724 23949914 -138650016 + MIR SINE MIR 28 224 -38 2391 143 19 21 chrX 23950337 23950662 -138649268 - MSTB LTR MaLR -1 425 100 2348 119 11 3 chrX 23950662 23951023 -138648907 - THE1B LTR MaLR 0 364 1 2391 143 19 21 chrX 23951023 23951123 -138648807 - MSTB LTR MaLR -326 100 1 423 260 142 18 chrX 23951138 23951307 -138648623 + MIR SINE MIR 12 201 -61 268 261 14 14 chrX 23952445 23952514 -138647416 + L2 LINE L2 3223 3291 -22 357 24 0 0 chrX 23952530 23952572 -138647358 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 387 244 144 112 chrX 23954003 23954405 -138645525 - MLT1H LTR MaLR -127 422 8 218 302 52 9 chrX 23954540 23954656 -138645274 + CT-rich Low_complexity Low_complexity 4 124 0 227 263 92 13 chrX 23955775 23955851 -138644079 + MIR SINE MIR 104 185 -77 2451 84 0 0 chrX 23956118 23956427 -138643503 + AluSg SINE Alu 1 309 -1 297 0 0 0 chrX 23956983 23957016 -138642914 + (TTA)n Simple_repeat Simple_repeat 2 34 0 861 213 50 20 chrX 23957191 23957393 -138642537 - MER3 DNA MER1_type 0 209 2 744 186 90 34 chrX 23957996 23958173 -138641757 + MER5A DNA MER1_type 3 189 0 366 23 0 0 chrX 23958219 23958262 -138641668 + (TG)n Simple_repeat Simple_repeat 2 44 0 2295 102 3 0 chrX 23958312 23958617 -138641313 + AluSg SINE Alu 1 306 -4 511 255 56 6 chrX 23959580 23959741 -138640189 - MIR SINE MIR -13 249 81 604 217 173 48 chrX 23959874 23960123 -138639807 - MLT1J2 LTR MaLR -132 318 39 1346 106 111 4 chrX 23960172 23960407 -138639523 + THE1C LTR MaLR 116 375 0 2478 74 3 0 chrX 23961367 23961666 -138638264 - AluSp SINE Alu -13 300 1 15089 128 23 8 chrX 23961695 23964076 -138635854 + Tigger1 DNA MER2_type 1 2418 0 375 250 73 55 chrX 23966339 23966503 -138633427 + LTR33 LTR ERVL 14 180 -341 373 277 50 25 chrX 23966828 23966947 -138632983 - L2 LINE L2 0 3272 3151 1514 196 95 17 chrX 23967630 23967977 -138631953 - MLT1A2 LTR MaLR 0 374 1 679 308 43 24 chrX 23968238 23968566 -138631364 + LTR16C LTR ERVL 158 491 0 7277 43 0 5 chrX 23968702 23969680 -138630250 - L1PA8 LINE L1 -2 6170 5198 676 244 36 6 chrX 23969825 23969993 -138629937 - MER5B DNA MER1_type 0 178 6 631 174 29 51 chrX 23970004 23970142 -138629788 + MER58 DNA MER1_type 2 136 -2284 1211 304 9 12 chrX 23971984 23972405 -138627525 + LTR16A LTR ERVL 25 444 -6 374 291 199 7 chrX 23972460 23972601 -138627329 - MIR SINE MIR -93 169 2 414 301 85 60 chrX 23973977 23974316 -138625614 - L2 LINE L2 -6 3307 2881 4805 99 18 15 chrX 23974402 23975121 -138624809 - L1PA10 LINE L1 -1 6167 5447 780 152 51 7 chrX 23975272 23975410 -138624520 - MER46A DNA MER2_type 0 236 93 619 198 76 13 chrX 23975610 23975638 -138624292 - MER5B DNA MER1_type -3 175 150 1837 159 0 23 chrX 23975638 23975940 -138623990 - AluJo SINE Alu -17 295 1 619 198 76 13 chrX 23975940 23976068 -138623862 - MER5B DNA MER1_type -28 150 9 895 305 30 3 chrX 23976767 23977101 -138622829 - LTR16C LTR ERVL -60 431 89 213 178 0 0 chrX 23978929 23978974 -138620956 + T-rich Low_complexity Low_complexity 1 45 0 7615 28 3 0 chrX 23978974 23980111 -138619819 - L1PA4 LINE L1 0 6155 5019 716 195 95 0 chrX 23980724 23980893 -138619037 - MER53 DNA DNA -3 186 2 316 284 30 45 chrX 23981203 23981337 -138618593 + MIR SINE MIR 116 247 -15 189 139 0 0 chrX 23981353 23981396 -138618534 + (CAT)n Simple_repeat Simple_repeat 2 44 0 338 171 85 24 chrX 23981978 23982060 -138617870 - L1MD3 LINE L1 -8 7987 7901 189 0 0 0 chrX 23983237 23983258 -138616672 + (A)n Simple_repeat Simple_repeat 1 21 0 1070 277 0 36 chrX 23983275 23983604 -138616326 - MER102a DNA MER1_type -5 325 9 2567 49 0 3 chrX 23983858 23984163 -138615767 - AluY SINE Alu -7 304 1 342 0 0 0 chrX 23984375 23984413 -138615517 + (CA)n Simple_repeat Simple_repeat 2 39 0 1517 177 7 26 chrX 23984497 23984768 -138615162 + AluJo SINE Alu 12 277 -35 401 227 20 107 chrX 23985190 23985340 -138614590 - MIR SINE MIR -75 187 51 678 155 139 16 chrX 23986542 23986705 -138613225 + MER5A DNA MER1_type 4 189 0 237 356 0 0 chrX 23986725 23986798 -138613132 + L2 LINE L2 3227 3299 -14 732 189 31 105 chrX 23986907 23986970 -138612960 - MER5B DNA MER1_type -1 177 111 1962 106 16 10 chrX 23986970 23987282 -138612648 - L1MA3 LINE L1 0 6305 5992 732 189 31 105 chrX 23987282 23987409 -138612521 - MER5B DNA MER1_type -67 111 1 423 262 10 0 chrX 23988678 23988781 -138611149 - MLT1J LTR MaLR -315 196 93 345 24 0 0 chrX 23988793 23988835 -138611095 + (TG)n Simple_repeat Simple_repeat 1 42 0 812 281 58 11 chrX 23988860 23989138 -138610792 - LTR16C LTR ERVL -200 291 1 23 0 0 0 chrX 23989484 23989507 -138610423 + AT_rich Low_complexity Low_complexity 1 23 0 2560 43 0 0 chrX 23989708 23990013 -138609917 - AluY SINE Alu -3 308 4 279 0 0 0 chrX 23991064 23991095 -138608835 + (TG)n Simple_repeat Simple_repeat 2 32 0 215 137 59 0 chrX 23991309 23991360 -138608570 + (TA)n Simple_repeat Simple_repeat 1 54 0 1221 135 0 0 chrX 23991362 23991569 -138608361 - L1M4 LINE L1 -383 5791 5585 934 194 0 16 chrX 23991882 23992068 -138607862 - MER20 DNA MER1_type -6 213 31 366 283 137 58 chrX 23992100 23992464 -138607466 - MLT1J LTR MaLR -110 401 9 2547 68 0 0 chrX 23992684 23992992 -138606938 + AluSx SINE Alu 1 308 -4 180 47 47 47 chrX 23993535 23993578 -138606352 + (TATAA)n Simple_repeat Simple_repeat 1 43 0 1715 201 28 63 chrX 23993593 23994066 -138605864 + MLT1C LTR MaLR 10 465 -2 183 167 0 0 chrX 23994848 23994890 -138605040 + A-rich Low_complexity Low_complexity 3 44 0 3149 105 11 4 chrX 23995300 23995767 -138604163 + L1PA13 LINE L1 5690 6159 -4 1052 316 204 26 chrX 23995880 23996723 -138603207 - L3 LINE CR1 -104 1473 481 930 167 118 20 chrX 23996768 23996972 -138602958 + MER58A DNA MER1_type 1 224 0 3009 267 138 33 chrX 23996979 23998402 -138601528 + L2 LINE L2 1588 3155 -158 383 287 164 27 chrX 23998436 23999139 -138600791 + L1M4 LINE L1 2334 3132 -3014 5107 128 14 75 chrX 23999160 24000261 -138599669 - L1MA8 LINE L1 -4 6287 5254 2234 188 7 0 chrX 24000274 24000727 -138599203 + L1 LINE L1 4758 5213 -933 323 271 64 28 chrX 24000710 24001068 -138598862 + L1M4 LINE L1 3122 3492 -2654 * 1564 227 163 2 chrX 24002430 24002889 -138597041 - MLT1H LTR MaLR -10 539 7 25 31 0 0 chrX 24003776 24003808 -138596122 + AT_rich Low_complexity Low_complexity 1 32 0 2014 102 42 3 chrX 24003819 24004103 -138595827 + AluSx SINE Alu 1 295 -17 603 66 0 0 chrX 24004126 24004202 -138595728 - AluS SINE Alu -237 76 1 392 313 20 40 chrX 24004260 24004499 -138595431 + MIR SINE MIR 23 258 -4 251 299 52 0 chrX 24004977 24005054 -138594876 + L2 LINE L2 2412 2492 -822 254 352 0 0 chrX 24005210 24005298 -138594632 - MER117 DNA MER1_type -37 160 73 403 257 50 0 chrX 24005745 24005846 -138594084 - MLT1J2 LTR MaLR 0 450 345 27 0 0 0 chrX 24006003 24006030 -138593900 + AT_rich Low_complexity Low_complexity 1 27 0 395 153 0 0 chrX 24006230 24006302 -138593628 - L1PA16 LINE L1 0 6166 6095 226 361 0 0 chrX 24006345 24006453 -138593477 - L1MC/D LINE L1 -1964 5844 5737 250 307 46 20 chrX 24006476 24006629 -138593301 + L1M4 LINE L1 4911 5067 -1079 2255 123 22 30 chrX 24008211 24008367 -138591563 + THE1B LTR MaLR 1 157 -207 2523 53 0 3 chrX 24008367 24008668 -138591262 - AluY SINE Alu -11 300 1 2255 123 22 30 chrX 24008668 24008878 -138591052 + THE1B LTR MaLR 157 364 0 228 35 0 0 chrX 24010186 24010215 -138589715 + (TC)n Simple_repeat Simple_repeat 2 30 0 2157 109 13 0 chrX 24010215 24010517 -138589413 - AluSx SINE Alu -6 306 1 359 216 129 42 chrX 24012212 24012361 -138587569 - MLT1L LTR MaLR -342 246 84 1962 177 53 19 chrX 24012398 24012810 -138587120 - MSTB LTR MaLR 0 426 1 248 280 104 40 chrX 24013661 24013786 -138586144 - MIR SINE MIR -63 199 67 379 257 82 98 chrX 24014235 24014418 -138585512 + MIR SINE MIR 32 211 -51 345 214 83 88 chrX 24015266 24015458 -138584472 - L1ME4a LINE L1 -180 5941 5751 2431 71 0 10 chrX 24016614 24016925 -138583005 + AluY SINE Alu 1 308 -3 300 27 0 0 chrX 24016979 24017016 -138582914 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 447 19 0 0 chrX 24017015 24017067 -138582863 + (GA)n Simple_repeat Simple_repeat 2 53 0 188 100 25 0 chrX 24017327 24017367 -138582563 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 227 312 11 32 chrX 24017487 24017580 -138582350 + L2 LINE L2 3223 3313 0 532 299 55 30 chrX 24018074 24018345 -138581585 + L2 LINE L2 2236 2513 -801 275 347 10 0 chrX 24018461 24018559 -138581371 + L2 LINE L2 3161 3259 -13 731 325 144 47 chrX 24019192 24019596 -138580334 + L2 LINE L2 925 1288 -2026 216 0 0 0 chrX 24019596 24019620 -138580310 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 731 325 144 47 chrX 24019620 24019745 -138580185 + L2 LINE L2 1288 1399 -1915 701 172 0 52 chrX 24019745 24019879 -138580051 - FLAM_A SINE Alu -6 127 1 731 325 144 47 chrX 24019879 24020491 -138579439 + L2 LINE L2 1399 2180 -1134 602 198 108 25 chrX 24020491 24020648 -138579282 + MER5B DNA MER1_type 3 172 -6 602 335 123 17 chrX 24020695 24021101 -138578829 + L2 LINE L2 2205 2653 -661 340 264 54 23 chrX 24021241 24021370 -138578560 - LTR67 LTR ERVL 0 557 425 494 246 17 0 chrX 24021504 24021622 -138578308 + MER94 DNA DNA 15 134 0 * 953 216 11 0 chrX 24021622 24021789 -138578141 + MLT1F LTR MaLR 359 527 -15 2212 118 3 0 chrX 24023282 24023586 -138576344 - AluSx SINE Alu -7 305 1 2346 80 6 13 chrX 24023953 24024266 -138575664 + AluY SINE Alu 1 311 0 2254 105 3 0 chrX 24024956 24025261 -138574669 + AluSg SINE Alu 1 306 -4 2238 78 3 20 chrX 24025491 24025666 -138574264 + AluSx SINE Alu 2 172 -140 1207 139 90 145 chrX 24025666 24025940 -138573990 - LTR7 LTR ERV1 0 450 211 2583 58 3 0 chrX 24025940 24026249 -138573681 + AluY SINE Alu 1 310 -1 1207 139 90 145 chrX 24026249 24026450 -138573480 - LTR7 LTR ERV1 -239 211 1 2238 78 3 20 chrX 24026450 24026568 -138573362 + AluSx SINE Alu 172 290 -22 615 254 51 0 chrX 24026568 24026706 -138573224 + MIR SINE MIR 22 166 -96 389 119 0 0 chrX 24026712 24026771 -138573159 + Alu SINE Alu 235 293 -8 332 229 12 12 chrX 24026994 24027077 -138572853 + MIR SINE MIR 162 244 -18 2237 107 0 13 chrX 24028304 24028614 -138571316 + AluSx SINE Alu 1 306 -6 2458 76 0 0 chrX 24029374 24029675 -138570255 - AluY SINE Alu -10 301 1 404 360 16 8 chrX 24029725 24029978 -138569952 - L1M3 LINE L1 -361 5810 5556 955 262 55 30 chrX 24030029 24030550 -138569380 + MLT1G LTR MaLR 1 542 -7 333 252 126 26 chrX 24030556 24030707 -138569223 - L1M3 LINE L1 -2325 5483 5318 1298 292 68 23 chrX 24030731 24031767 -138568163 - L1M3 LINE L1 -868 5278 4182 433 152 11 11 chrX 24032921 24033013 -138566917 + GA-rich Low_complexity Low_complexity 1 92 0 1286 219 102 48 chrX 24033232 24033266 -138566664 + Charlie7 DNA MER1_type 1862 1893 -719 1981 55 47 12 chrX 24033266 24033522 -138566408 - AluY SINE Alu -3 308 44 1286 219 102 48 chrX 24033522 24034167 -138565763 + Charlie7 DNA MER1_type 1893 2577 -35 466 197 7 117 chrX 24034176 24034246 -138565684 + L2 LINE L2 3192 3241 -72 923 263 0 13 chrX 24034246 24034470 -138565460 + MER58A DNA MER1_type 1 221 -3 466 197 7 117 chrX 24034470 24034536 -138565394 + L2 LINE L2 3241 3313 0 3822 158 80 75 chrX 24034632 24034857 -138565073 - L1MA9 LINE L1 0 6312 6090 1811 121 104 0 chrX 24034857 24035137 -138564793 + AluSx SINE Alu 3 311 -1 3822 158 80 75 chrX 24035137 24036171 -138563759 - L1MA9 LINE L1 -222 6090 5041 11229 150 23 44 chrX 24037230 24039264 -138560666 - Ricksha_c DNA DNA 0 2046 55 251 282 0 51 chrX 24040040 24040118 -138559812 - L2 LINE L2 -1 3312 3239 217 266 32 32 chrX 24040329 24040423 -138559507 + L3 LINE CR1 1478 1571 -6 2251 81 10 3 chrX 24040553 24040848 -138559082 - AluSp SINE Alu -16 297 1 253 208 0 21 chrX 24042636 24042684 -138557246 - LTR16C LTR ERVL -4 487 441 1725 265 152 4 chrX 24042685 24043199 -138556731 - MLT1G1 LTR MaLR 0 595 6 1030 345 28 0 chrX 24043204 24043566 -138556364 - LTR16C LTR ERVL -47 444 73 1365 194 28 95 chrX 24043980 24044371 -138555559 + MLT1A1 LTR MaLR 1 365 0 336 302 26 0 chrX 24044408 24044524 -138555406 + MIR SINE MIR 78 196 -66 180 176 0 0 chrX 24045483 24045517 -138554413 + T-rich Low_complexity Low_complexity 1 34 0 1061 249 39 28 chrX 24045599 24046033 -138553897 - MLT1H1 LTR MaLR -75 480 1 827 296 31 4 chrX 24046141 24046367 -138553563 + MIR SINE MIR 11 242 -20 2196 106 0 0 chrX 24046978 24047301 -138552629 + AluSx SINE Alu 1 323 0 200 326 43 43 chrX 24048353 24048494 -138551436 - MIR SINE MIR -66 196 56 555 301 83 26 chrX 24049526 24049828 -138550102 - MLT1J LTR MaLR -37 474 156 250 183 100 17 chrX 24049947 24050007 -138549923 - MLT1L LTR MaLR -549 66 2 2164 91 0 3 chrX 24050227 24050540 -138549390 - AluSq SINE Alu 0 312 1 464 280 17 2 chrX 24050725 24050859 -138549071 - MIR SINE MIR -63 145 20 2091 107 47 0 chrX 24050881 24051179 -138548751 - AluSq SINE Alu 0 313 2 331 299 62 10 chrX 24052415 24052512 -138547418 - MER91C DNA MER1_type -37 103 2 2397 78 3 0 chrX 24052873 24053166 -138546764 - AluSp SINE Alu -19 294 1 184 305 17 34 chrX 24053355 24053414 -138546516 + L2 LINE L2 3232 3289 -24 3787 115 21 16 chrX 24054002 24054577 -138545353 - MER4E LTR ERV1 0 779 202 2306 80 0 20 chrX 24054580 24054881 -138545049 + AluSq SINE Alu 1 295 -18 2191 101 10 3 chrX 24054889 24055195 -138544735 + AluSq SINE Alu 5 312 -1 201 182 0 0 chrX 24055195 24055250 -138544680 + (TA)n Simple_repeat Simple_repeat 1 55 0 1504 99 9 0 chrX 24055250 24055461 -138544469 - MER4E LTR ERV1 -566 213 1 502 252 126 6 chrX 24056485 24056644 -138543286 - MER5A DNA MER1_type -1 188 11 239 20 61 20 chrX 24056746 24056795 -138543135 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1616 186 3 26 chrX 24057237 24057370 -138542560 + AluJo SINE Alu 6 141 -171 2156 80 6 77 chrX 24057370 24057694 -138542236 + AluSx SINE Alu 1 301 -11 1616 186 3 26 chrX 24057694 24057867 -138542063 + AluJo SINE Alu 141 305 -7 391 289 101 80 chrX 24058088 24058842 -138541088 + HAL1 LINE L1 817 1586 -921 319 278 69 93 chrX 24058872 24059088 -138540842 + HAL1 LINE L1 2283 2493 -14 182 250 145 13 chrX 24059579 24059655 -138540275 + L3 LINE CR1 302 387 -1190 351 296 127 9 chrX 24060329 24060542 -138539388 + L3b LINE CR1 1103 1340 -243 669 266 97 41 chrX 24060663 24060695 -138539235 - MLT2B2 LTR ERVL -46 474 445 2236 83 0 10 chrX 24060695 24060995 -138538935 + AluSx SINE Alu 2 298 -14 669 266 97 41 chrX 24060995 24061260 -138538670 - MLT2B2 LTR ERVL -75 445 147 26 0 0 0 chrX 24061834 24061860 -138538070 + AT_rich Low_complexity Low_complexity 1 26 0 2508 76 0 3 chrX 24062198 24062512 -138537418 + AluSq SINE Alu 1 313 0 494 101 0 0 chrX 24062556 24062625 -138537305 + MADE1 DNA Mariner 12 80 0 254 314 0 0 chrX 24062824 24062942 -138536988 + A-rich Low_complexity Low_complexity 1 118 0 30 45 0 0 chrX 24063050 24063094 -138536836 + AT_rich Low_complexity Low_complexity 1 44 0 200 358 13 40 chrX 24063274 24063425 -138536505 - L2 LINE L2 -885 2429 2283 537 242 88 22 chrX 24063894 24064076 -138535854 - LTR16C LTR ERVL 0 491 298 328 279 135 0 chrX 24065279 24065390 -138534540 + L2 LINE L2 3147 3272 0 2319 100 3 0 chrX 24065540 24065841 -138534089 - AluSp SINE Alu -11 302 1 189 322 0 17 chrX 24066648 24066707 -138533223 + MIR SINE MIR 84 141 -67 2335 84 0 7 chrX 24067832 24068005 -138531925 - AluSp SINE Alu -7 306 134 2545 43 0 0 chrX 24068005 24068307 -138531623 - AluY SINE Alu -9 302 1 2335 84 0 7 chrX 24068307 24068441 -138531489 - AluSp SINE Alu -179 134 1 403 283 25 17 chrX 24069117 24069237 -138530693 - L2 LINE L2 -16 3256 3136 283 243 14 0 chrX 24070428 24070498 -138529432 - MLT1J2 LTR MaLR 0 450 380 919 244 122 18 chrX 24070529 24070808 -138529122 - MLT1J2 LTR MaLR -137 313 6 189 0 0 0 chrX 24071776 24071797 -138528133 + (T)n Simple_repeat Simple_repeat 1 21 0 256 250 0 0 chrX 24071908 24071968 -138527962 + GA-rich Low_complexity Low_complexity 1 60 0 2464 63 13 0 chrX 24072284 24072584 -138527346 - AluSp SINE Alu -9 304 1 966 231 89 0 chrX 24073167 24073436 -138526494 - L1MC4 LINE L1 -143 7899 7607 247 241 0 24 chrX 24073827 24073839 -138526091 + A-rich Low_complexity Low_complexity 1 12 -69 2036 125 0 7 chrX 24073839 24074127 -138525803 + AluSg SINE Alu 1 286 -24 247 241 0 24 chrX 24074127 24074197 -138525733 + A-rich Low_complexity Low_complexity 12 81 0 628 302 93 0 chrX 24074208 24074423 -138525507 + L3 LINE CR1 570 804 -773 2094 184 11 61 chrX 24074428 24074977 -138524953 + L1M4 LINE L1 4842 5356 -850 2404 78 7 0 chrX 24074977 24075286 -138524644 + AluY SINE Alu 1 311 0 2094 184 11 61 chrX 24075286 24075357 -138524573 + L1M4 LINE L1 5356 5429 -777 7007 164 67 72 chrX 24075374 24076361 -138523569 + L1MC3 LINE L1 6148 7191 -594 240 175 18 20 chrX 24076361 24076427 -138523503 + MLT1E LTR MaLR 65 161 -388 7007 164 67 72 chrX 24076427 24077010 -138522920 + L1MC3 LINE L1 7191 7775 -10 981 275 108 33 chrX 24077056 24077624 -138522306 + L2 LINE L2 2585 3183 -130 192 296 31 51 chrX 24077676 24077774 -138522156 + L2 LINE L2 3200 3295 -18 753 323 53 30 chrX 24077790 24078128 -138521802 + L3 LINE CR1 916 1261 -316 277 200 35 82 chrX 24078126 24078211 -138521719 - L2 LINE L2 -1 3312 3232 * 197 354 100 64 chrX 24078234 24078514 -138521416 + L3 LINE CR1 1284 1573 -4 216 204 0 0 chrX 24078622 24078666 -138521264 + T-rich Low_complexity Low_complexity 1 44 0 3312 39 2 0 chrX 24078675 24079081 -138520849 - L1PA7 LINE L1 -2 6152 5746 1441 264 50 32 chrX 24079563 24079999 -138519931 - LTR33 LTR ERVL -20 501 58 259 211 35 0 chrX 24080010 24080067 -138519863 + L2 LINE L2 2722 2780 -534 576 247 28 6 chrX 24080542 24080720 -138519210 + L1M4 LINE L1 2210 2391 -3755 426 241 122 19 chrX 24080780 24081091 -138518839 + L1M4 LINE L1 2980 3322 -2824 1112 263 117 23 chrX 24081098 24081765 -138518165 + L1M4 LINE L1 3390 4142 -2004 2065 112 0 7 chrX 24081821 24082137 -138517793 + AluSq SINE Alu 1 314 0 349 259 162 20 chrX 24082141 24082338 -138517592 + L1M4 LINE L1 4150 4374 -1772 322 285 81 46 chrX 24082903 24083163 -138516767 - L1MEd LINE L1 -4956 1163 895 11246 191 18 18 chrX 24083248 24086017 -138513913 - L1PA16 LINE L1 -1 6165 3398 2352 90 10 0 chrX 24086017 24086318 -138513612 - AluSq SINE Alu -7 306 3 11246 191 18 18 chrX 24086318 24086848 -138513082 - L1PA16 LINE L1 -2768 3398 2871 1880 118 0 14 chrX 24086848 24087127 -138512803 - AluSx SINE Alu -7 305 31 11246 191 18 18 chrX 24087127 24087429 -138512501 - L1PA16 LINE L1 -3295 2871 2571 21 71 0 0 chrX 24087919 24087961 -138511969 + AT_rich Low_complexity Low_complexity 1 42 0 3137 158 26 33 chrX 24089723 24089952 -138509978 + MER6A DNA MER2_type 1 230 -635 369 0 0 0 chrX 24089952 24089993 -138509937 + (TG)n Simple_repeat Simple_repeat 2 42 0 3137 158 26 33 chrX 24089993 24090372 -138509558 + MER6A DNA MER2_type 230 605 0 407 284 10 0 chrX 24091262 24091364 -138508566 + L3 LINE CR1 400 502 -1075 307 311 50 25 chrX 24091582 24091743 -138508187 + L1MEd LINE L1 990 1154 -4965 574 318 87 48 chrX 24091834 24092028 -138507902 - L1M4 LINE L1 -1220 4926 4741 2433 64 0 0 chrX 24092028 24092326 -138507604 - AluY SINE Alu -13 298 1 574 318 87 48 chrX 24092326 24092908 -138507022 - L1M4 LINE L1 -1405 4741 4104 188 156 44 67 chrX 24092943 24092988 -138506942 - L2 LINE L2 -2 3270 3227 595 325 50 60 chrX 24093081 24093518 -138506412 - L2 LINE L2 -56 3257 2825 615 255 107 20 chrX 24093544 24093740 -138506190 - L2 LINE L2 -1081 2233 2021 225 195 0 0 chrX 24093727 24093768 -138506162 - L2 LINE L2 -45 3227 3187 * 567 343 140 43 chrX 24093829 24094485 -138505445 - L1M4 LINE L1 -2082 4064 3345 334 258 102 59 chrX 24094496 24094752 -138505178 - L1M4 LINE L1 -2877 3269 3003 882 187 0 0 chrX 24095155 24095325 -138504605 - AluJb SINE Alu 0 303 134 2181 89 51 3 chrX 24095325 24095618 -138504312 - AluSp SINE Alu -6 307 1 1030 325 99 11 chrX 24095738 24096191 -138503739 + L3 LINE CR1 1042 1534 -43 500 313 69 71 chrX 24096652 24096733 -138503197 - L1MEd LINE L1 -5345 774 694 1575 101 190 16 chrX 24096733 24096991 -138502939 - AluSp SINE Alu -10 303 1 500 313 69 71 chrX 24096991 24097388 -138502542 - L1MEd LINE L1 -5425 694 297 3146 215 74 28 chrX 24097443 24098263 -138501667 + L1ME1 LINE L1 5259 6116 -50 265 159 70 45 chrX 24098297 24098454 -138501476 + (TTATA)n Simple_repeat Simple_repeat 5 165 0 24 67 0 0 chrX 24098467 24098512 -138501418 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 24098619 24098640 -138501290 + AT_rich Low_complexity Low_complexity 1 21 0 523 332 62 13 chrX 24098868 24099094 -138500836 - MIR SINE MIR -7 255 19 4242 171 42 13 chrX 24099148 24100102 -138499828 - L1MB1 LINE L1 -75 6093 5110 1096 125 99 39 chrX 24100093 24100172 -138499758 + L1MA10 LINE L1 6082 6155 -179 * 243 88 0 0 chrX 24100172 24100206 -138499724 + (CA)n Simple_repeat Simple_repeat 1 34 0 1096 125 99 39 chrX 24100206 24100358 -138499572 + L1MA10 LINE L1 6155 6327 -7 1630 185 76 50 chrX 24100554 24100937 -138498993 + MSTD LTR MaLR 1 393 -3 258 382 50 23 chrX 24101383 24101603 -138498327 - L2 LINE L2 -479 2835 2610 3259 147 118 5 chrX 24301863 24302497 -138297433 - THE1C-int LTR MaLR -874 706 1 1739 140 75 28 chrX 24302497 24302855 -138297075 - THE1C LTR MaLR 0 375 1 235 233 0 0 chrX 24302855 24302915 -138297015 + MSTA LTR MaLR 171 230 -198 286 143 0 48 chrX 24302915 24302999 -138296931 + (TC)n Simple_repeat Simple_repeat 2 81 0 1195 296 18 24 chrX 24303616 24304069 -138295861 + L1ME1 LINE L1 249 698 -5698 2297 78 0 26 chrX 24304116 24304422 -138295508 + AluY SINE Alu 1 298 -13 2332 106 3 0 chrX 24304537 24304874 -138295056 + AluSq SINE Alu 1 338 0 1373 258 71 9 chrX 24304877 24305401 -138294529 + L1ME1 LINE L1 1512 2067 -4329 2208 208 66 55 chrX 24305402 24306051 -138293879 + L1ME1 LINE L1 5411 6066 -169 1149 23 0 0 chrX 24306079 24306211 -138293719 - L1PA5 LINE L1 -201 5953 5822 1198 58 13 0 chrX 24306212 24306368 -138293562 + L1PA5 LINE L1 5995 6152 -2 23 0 0 0 chrX 24306368 24306391 -138293539 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chrX 24306588 24306636 -138293294 + AT_rich Low_complexity Low_complexity 1 48 0 3489 77 24 16 chrX 24306722 24307230 -138292700 - L1MA1 LINE L1 -9 6293 5782 880 198 16 32 chrX 24307344 24307531 -138292399 + MER5A DNA MER1_type 4 187 -2 1466 268 102 7 chrX 24307968 24308389 -138291541 + LTR16B LTR ERVL 1 461 -3 22 70 0 0 chrX 24308588 24308631 -138291299 + AT_rich Low_complexity Low_complexity 1 43 0 279 313 15 30 chrX 24309066 24309200 -138290730 - MLT1K LTR MaLR -30 558 427 24 32 0 0 chrX 24309975 24310006 -138289924 + AT_rich Low_complexity Low_complexity 1 31 0 2190 74 0 18 chrX 24310192 24310477 -138289453 + AluSq SINE Alu 1 280 -33 405 0 0 0 chrX 24310477 24310522 -138289408 + (CA)n Simple_repeat Simple_repeat 1 45 0 252 250 0 0 chrX 24311237 24311289 -138288641 - MIR SINE MIR -1 261 210 231 36 0 0 chrX 24311291 24311319 -138288611 + (TC)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chrX 24311324 24311351 -138288579 + (TG)n Simple_repeat Simple_repeat 2 28 0 2289 122 26 3 chrX 24311362 24311706 -138288224 - MER46B DNA MER2_type -4 232 6 733 261 71 0 chrX 24311711 24311895 -138288035 - MIR SINE MIR -64 198 2 360 328 17 0 chrX 24311900 24312019 -138287911 - L2 LINE L2 -211 3061 2941 259 329 0 0 chrX 24312105 24312184 -138287746 - L2 LINE L2 -667 2647 2569 194 380 89 21 chrX 24312258 24312787 -138287143 + L3 LINE CR1 630 1194 -383 241 192 0 19 chrX 24313232 24313284 -138286646 + (CATATA)n Simple_repeat Simple_repeat 5 55 0 1133 229 58 99 chrX 24313314 24313971 -138285959 - L2 LINE L2 -9 3304 2686 1656 202 109 30 chrX 24313976 24314417 -138285513 + L1MB1 LINE L1 1 476 -6554 397 207 0 0 chrX 24314416 24314503 -138285427 + L1MB1 LINE L1 3914 4000 -3106 * 768 209 6 34 chrX 24314691 24314868 -138285062 - MER3 DNA MER1_type 0 209 38 1881 200 0 5 chrX 24314873 24315248 -138284682 - L1 LINE L1 -1968 4178 3806 2042 172 0 22 chrX 24315258 24315618 -138284312 + MLT1A1 LTR MaLR 12 363 -2 1929 205 12 2 chrX 24315619 24316033 -138283897 - L1 LINE L1 -2335 3811 3394 4600 193 28 31 chrX 24316046 24317419 -138282511 + L1MB1 LINE L1 5147 6450 -699 2501 39 0 0 chrX 24317419 24317703 -138282227 + AluY SINE Alu 14 297 -14 4600 193 28 31 chrX 24317703 24318365 -138281565 + L1MB1 LINE L1 6450 7113 -36 275 149 0 0 chrX 24318366 24318413 -138281517 - AluSc SINE Alu -4 295 249 2083 124 0 0 chrX 24318413 24318695 -138281235 - AluSc SINE Alu -27 282 1 468 51 0 0 chrX 24318712 24318771 -138281159 + (CA)n Simple_repeat Simple_repeat 2 60 0 943 135 0 0 chrX 24318813 24318969 -138280961 + L1MA10 LINE L1 6178 6333 -1 226 171 24 0 chrX 24318981 24319022 -138280908 - MER3 DNA MER1_type -167 42 1 22 56 0 0 chrX 24319659 24319695 -138280235 + AT_rich Low_complexity Low_complexity 1 36 0 402 242 117 95 chrX 24319801 24320074 -138279856 + LTR33A LTR ERVL 3 281 -242 186 43 0 0 chrX 24320248 24320271 -138279659 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1229 146 5 0 chrX 24320280 24320472 -138279458 - L1PA15 LINE L1 -4 6161 5969 825 160 13 6 chrX 24320587 24320760 -138279170 - L1P4 LINE L1 -699 5467 5290 388 274 56 138 chrX 24321294 24321721 -138278209 + L2 LINE L2 2922 3313 0 874 315 32 71 chrX 24321830 24322006 -138277924 + L1MEd LINE L1 42 223 -5896 9869 145 7 7 chrX 24322006 24322076 -138277854 + L1PA10 LINE L1 3539 3608 -2560 2246 100 0 10 chrX 24322076 24322376 -138277554 - AluSc SINE Alu -9 300 4 9869 145 7 7 chrX 24322376 24324917 -138275013 + L1PA10 LINE L1 3607 6166 -2 874 315 32 71 chrX 24324917 24325582 -138274348 + L1MEd LINE L1 223 850 -5269 290 67 22 0 chrX 24325837 24325882 -138274048 + (TA)n Simple_repeat Simple_repeat 2 47 0 239 250 13 79 chrX 24326282 24326358 -138273572 - MER5B DNA MER1_type -6 172 102 7622 179 17 9 chrX 24326361 24328660 -138271270 - L1PA16 LINE L1 -237 5929 3622 2446 76 0 3 chrX 24328837 24329140 -138270790 - AluY SINE Alu -8 303 2 38 22 0 0 chrX 24329355 24329400 -138270530 + AT_rich Low_complexity Low_complexity 1 45 0 339 113 0 0 chrX 24331041 24331094 -138268836 + (CA)n Simple_repeat Simple_repeat 2 54 0 696 286 58 46 chrX 24331295 24331624 -138268306 + MLT1I LTR MaLR 27 359 -50 203 159 45 0 chrX 24331625 24331669 -138268261 + A-rich Low_complexity Low_complexity 2 47 0 1706 57 0 3 chrX 24334196 24334476 -138265454 + MLT2A1 LTR ERVL 1 351 -93 1708 143 51 0 chrX 24334602 24334917 -138265013 + L1M2 LINE L1 2559 2889 -3960 1146 70 51 0 chrX 24335063 24335220 -138264710 - L1PA16 LINE L1 -250 5916 5752 451 163 116 12 chrX 24335222 24335308 -138264622 + 5S rRNA rRNA 2 96 -25 2258 80 13 13 chrX 24335737 24336039 -138263891 - AluSp SINE Alu -11 302 1 466 233 142 51 chrX 24336327 24336503 -138263427 - MLT1E2 LTR MaLR -371 255 64 620 228 117 33 chrX 24336622 24336929 -138263001 - L1M4 LINE L1 -933 5213 4881 2009 244 85 23 chrX 24336956 24337787 -138262143 - L1M4 LINE L1 -1335 4811 3929 521 221 53 44 chrX 24338062 24338288 -138261642 - Charlie1 DNA MER1_type -1 2760 2533 3630 191 49 33 chrX 24338301 24339566 -138260364 + L1MB8 LINE L1 4884 6178 0 18452 153 55 24 chrX 24339603 24342690 -138257240 + L1M1 LINE L1 12 3209 -4356 2033 136 0 3 chrX 24342690 24343000 -138256930 + AluSx SINE Alu 1 309 -3 18452 153 55 24 chrX 24343000 24343190 -138256740 + L1M1 LINE L1 3209 3392 -4173 7068 104 6 16 chrX 24343192 24344296 -138255634 + L1MA2 LINE L1 5212 6304 0 414 0 0 0 chrX 24345181 24345227 -138254703 + (TG)n Simple_repeat Simple_repeat 1 46 0 210 71 0 0 chrX 24345229 24345257 -138254673 + (GA)n Simple_repeat Simple_repeat 2 29 0 234 275 22 22 chrX 24347311 24347402 -138252528 - MLT1I LTR MaLR -264 145 55 587 133 95 0 chrX 24350248 24350353 -138249577 + FLAM_A SINE Alu 4 118 -15 1679 170 0 44 chrX 24351081 24351398 -138248532 + AluJb SINE Alu 1 303 -9 1748 155 0 57 chrX 24351571 24351887 -138248043 - AluJb SINE Alu -14 298 1 23 0 0 0 chrX 24352042 24352065 -138247865 + AT_rich Low_complexity Low_complexity 1 23 0 27 92 0 0 chrX 24353368 24353444 -138246486 + AT_rich Low_complexity Low_complexity 1 76 0 228 67 0 0 chrX 24354149 24354179 -138245751 + (TA)n Simple_repeat Simple_repeat 1 30 0 346 239 80 0 chrX 24354305 24354321 -138245609 - L1MA10 LINE L1 -3 6331 6316 488 301 50 37 chrX 24354321 24354643 -138245287 - L1ME1 LINE L1 -10 6156 5831 894 200 28 47 chrX 24354647 24354740 -138245190 + MLT1C LTR MaLR 7 100 -367 2595 129 31 10 chrX 24354740 24355157 -138244773 + MSTA LTR MaLR 3 428 0 894 200 28 47 chrX 24355157 24355318 -138244612 + MLT1C LTR MaLR 100 256 -211 902 182 39 107 chrX 24355319 24355599 -138244331 + MLT1B LTR MaLR 130 390 0 417 157 2 9 chrX 24355608 24355712 -138244218 - L1ME1 LINE L1 -366 5799 5703 237 312 81 11 chrX 24355780 24355966 -138243964 - L1ME1 LINE L1 -628 5550 5352 297 243 0 0 chrX 24356276 24356346 -138243584 - L1P LINE L1 -1177 4969 4900 30 45 0 0 chrX 24356749 24356793 -138243137 + AT_rich Low_complexity Low_complexity 1 44 0 313 274 105 0 chrX 24356808 24356903 -138243027 - L1ME1 LINE L1 -1554 4592 4488 309 95 0 0 chrX 24357230 24357272 -138242658 + LOR1b LTR ERV1 420 461 0 * 1850 220 67 18 chrX 24357272 24357815 -138242115 + Charlie2a DNA MER1_type 463 1032 -1830 295 254 50 54 chrX 24357844 24358104 -138241826 + Charlie2a DNA MER1_type 2238 2496 -366 788 229 43 91 chrX 24358106 24358547 -138241383 - LTR37B LTR ERV1 -48 420 1 444 276 42 14 chrX 24358592 24358809 -138241121 + Charlie2a DNA MER1_type 2549 2771 -91 1032 269 63 34 chrX 24359390 24359837 -138240093 + L1MEc LINE L1 57 516 -5880 1737 153 5 6 chrX 24360271 24360831 -138239099 - LTR39 LTR ERV1 0 783 164 2086 133 35 6 chrX 24361420 24361766 -138238164 - MER61D LTR ERV1 0 501 146 541 120 0 0 chrX 24361766 24361841 -138238089 - AluS SINE Alu -238 75 1 4108 162 17 26 chrX 24361841 24363047 -138236883 - MER61D-int LTR ERV1 -393 4824 3608 8482 38 8 2 chrX 24363047 24364048 -138235882 - LTR13 LTR ERVK 0 1007 1 4108 162 17 26 chrX 24364048 24364520 -138235410 - MER61D-int LTR ERV1 -1609 3608 3133 2338 73 7 7 chrX 24364520 24364821 -138235109 + AluSq SINE Alu 1 301 -12 4108 162 17 26 chrX 24364821 24364964 -138234966 - MER61D-int LTR ERV1 -2084 3133 598 638 156 22 37 chrX 24365345 24365480 -138234450 - MER61D-int LTR ERV1 -5068 149 17 2579 145 109 2 chrX 24365495 24365944 -138233986 - MER61D LTR ERV1 0 501 5 861 214 70 31 chrX 24366161 24366599 -138233331 + LTR48B LTR ERV1 137 644 0 2018 142 10 0 chrX 24366815 24367110 -138232820 - AluSx SINE Alu -14 298 1 1573 207 0 17 chrX 24367182 24367482 -138232448 - AluJo SINE Alu -17 295 1 3893 121 14 20 chrX 24367537 24368175 -138231755 - MER41B LTR ERV1 0 635 2 701 196 0 8 chrX 24368196 24368329 -138231601 - FLAM_C SINE Alu -11 132 1 320 284 21 5 chrX 24368435 24368633 -138231297 - L1M3 LINE L1 -365 5806 5605 2297 114 0 0 chrX 24368770 24369067 -138230863 - AluSg SINE Alu -13 297 1 1462 225 36 47 chrX 24369094 24369566 -138230364 - MLT1D LTR MaLR 0 505 39 216 0 0 0 chrX 24369566 24369590 -138230340 + (TA)n Simple_repeat Simple_repeat 2 25 0 2273 105 0 6 chrX 24369914 24370229 -138229701 - AluSq SINE Alu 0 313 1 2191 104 0 0 chrX 24371368 24371646 -138228284 + AluSx SINE Alu 1 278 -34 220 26 0 51 chrX 24371646 24371685 -138228245 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2744 84 16 0 chrX 24371693 24372062 -138227868 + THE1C LTR MaLR 1 375 0 189 302 123 28 chrX 24372908 24373014 -138226916 + MIR3 SINE MIR 12 127 -81 820 326 68 9 chrX 24373028 24373466 -138226464 - LTR16B LTR ERVL 0 464 1 275 287 59 40 chrX 24373467 24373568 -138226362 + MIR SINE MIR 159 261 -1 2237 156 5 5 chrX 24373652 24374042 -138225888 - MLT1B LTR MaLR 0 390 1 949 218 43 9 chrX 24374321 24374532 -138225398 + MER20 DNA MER1_type 1 218 -1 2246 34 0 0 chrX 24374589 24374858 -138225072 - L1PA4 LINE L1 0 6155 5887 2056 28 0 0 chrX 24374858 24375110 -138224820 + L1PA4 LINE L1 5641 5892 -263 733 243 92 5 chrX 24375110 24375316 -138224614 + HERVL68 LTR ERVL 4067 4290 -1240 764 265 74 27 chrX 24375319 24375617 -138224313 + HERVL68 LTR ERVL 2036 2347 -690 258 242 30 0 chrX 24375936 24376002 -138223928 + HERVL68 LTR ERVL 2635 2702 -335 263 315 2 32 chrX 24376737 24376871 -138223059 - MIR SINE MIR -73 135 6 1587 171 4 4 chrX 24377588 24377840 -138222090 + AluJo SINE Alu 47 298 -14 8179 57 6 214 chrX 24378962 24380708 -138219222 + SVA Other Other 1 1383 -3 2060 142 0 3 chrX 24380801 24381096 -138218834 + AluSx SINE Alu 1 294 -18 616 220 30 32 chrX 24381111 24381338 -138218592 + MLT1C LTR MaLR 194 377 -51 282 148 0 0 chrX 24381981 24382035 -138217895 + (TTC)n Simple_repeat Simple_repeat 1 54 0 2068 127 0 19 chrX 24384750 24385066 -138214864 + AluSq SINE Alu 1 310 -3 514 329 51 8 chrX 24385817 24386051 -138213879 - MIR SINE MIR -18 244 1 30 27 0 0 chrX 24386612 24386649 -138213281 + AT_rich Low_complexity Low_complexity 1 37 0 236 300 53 84 chrX 24387120 24387310 -138212620 - MIR SINE MIR -31 231 48 273 57 0 0 chrX 24387682 24387717 -138212213 - U2 snRNA snRNA -153 35 1 1945 125 3 99 chrX 24387820 24388204 -138211726 + MER7A DNA MER2_type 1 345 -1 1653 313 44 18 chrX 24388468 24389347 -138210583 + L2 LINE L2 2412 3313 0 296 238 12 60 chrX 24389388 24389472 -138210458 - L2 LINE L2 0 3313 3234 326 280 21 21 chrX 24389819 24389962 -138209968 - MLT1H LTR MaLR -395 154 12 2202 84 30 3 chrX 24390919 24391215 -138208715 - AluSp SINE Alu -9 304 1 25 0 0 0 chrX 24391323 24391348 -138208582 + AT_rich Low_complexity Low_complexity 1 25 0 2231 170 6 46 chrX 24391381 24391858 -138208072 - MER101 LTR ERV1 0 474 17 430 233 8 50 chrX 24392123 24392243 -138207687 - MER20 DNA MER1_type -103 116 2 376 314 8 8 chrX 24393159 24393277 -138206653 - MIR SINE MIR -140 122 5 3081 94 9 0 chrX 24393530 24393957 -138205973 - L1PA10 LINE L1 0 6168 5738 510 333 46 0 chrX 24395568 24395763 -138204167 + MIR SINE MIR 8 211 -51 238 248 57 67 chrX 24396674 24396779 -138203151 + MIR SINE MIR 51 154 -108 23 0 0 0 chrX 24396806 24396829 -138203101 + AT_rich Low_complexity Low_complexity 1 23 0 206 365 41 38 chrX 24396998 24397211 -138202719 - L2 LINE L2 -8 3264 3006 263 392 133 3 chrX 24397362 24397694 -138202236 - L2 LINE L2 -616 2698 2324 2572 62 0 0 chrX 24398425 24398734 -138201196 - AluY SINE Alu -2 309 1 1295 252 69 84 chrX 24400031 24400631 -138199299 + MLT1E LTR MaLR 1 591 -2 251 302 85 0 chrX 24401298 24401404 -138198526 - L2 LINE L2 -17 3296 3182 632 337 66 33 chrX 24401479 24401936 -138197994 + LTR33A LTR ERVL 1 472 -51 254 349 0 66 chrX 24401963 24402069 -138197861 - L2 LINE L2 -194 3078 2980 382 338 162 51 chrX 24402098 24402243 -138197687 - L2 LINE L2 -385 2929 2801 2292 101 0 0 chrX 24402243 24402530 -138197400 + AluSx SINE Alu 1 287 -25 194 0 0 37 chrX 24402530 24402557 -138197373 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 382 338 162 51 chrX 24402557 24402960 -138196970 - L2 LINE L2 -512 2802 2319 21 57 0 0 chrX 24405539 24405574 -138194356 + AT_rich Low_complexity Low_complexity 1 35 0 225 94 0 0 chrX 24407061 24407093 -138192837 + (T)n Simple_repeat Simple_repeat 1 32 0 2336 92 0 0 chrX 24407159 24407453 -138192477 - AluSx SINE Alu -18 294 1 280 167 0 0 chrX 24407579 24407633 -138192297 - L1M4 LINE L1 -1769 4377 4324 391 233 16 23 chrX 24407644 24407773 -138192157 - L1MB8 LINE L1 -12 6166 6039 * 577 165 68 11 chrX 24407772 24407948 -138191982 - L1M4 LINE L1 -756 5390 5205 * 1170 271 20 30 chrX 24407947 24408412 -138191518 - L1M4 LINE L1 -1327 4819 4357 2062 116 0 3 chrX 24408412 24408730 -138191200 - AluSx SINE Alu 0 317 1 1170 271 20 30 chrX 24408730 24408772 -138191158 - L1M4 LINE L1 -1789 4357 4316 453 269 162 0 chrX 24408771 24409042 -138190888 - L1MB7 LINE L1 -9 6175 5861 * 1127 283 49 21 chrX 24409093 24409663 -138190267 - L1MB7 LINE L1 -443 5723 5134 414 0 0 0 chrX 24409665 24409711 -138190219 + (TG)n Simple_repeat Simple_repeat 1 46 0 1382 143 55 48 chrX 24409802 24410075 -138189855 - AluJo SINE Alu -11 301 27 497 220 31 78 chrX 24410147 24410241 -138189689 - L1MB7 LINE L1 -1448 4698 4616 2401 76 0 0 chrX 24410241 24410544 -138189386 - AluY SINE Alu -8 303 1 497 220 31 78 chrX 24410544 24410640 -138189290 - L1MB7 LINE L1 -1530 4616 4517 525 268 60 89 chrX 24410655 24411036 -138188894 - L1ME LINE L1 -362 5807 5442 1550 153 4 0 chrX 24411036 24411278 -138188652 - AluJo SINE Alu -23 289 47 525 268 60 89 chrX 24411278 24411445 -138188485 - L1ME LINE L1 -727 5442 5272 1017 190 20 75 chrX 24411500 24411571 -138188359 - L1PB4 LINE L1 -13 6143 6070 209 57 29 0 chrX 24411571 24411606 -138188324 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2278 103 0 0 chrX 24411606 24411907 -138188023 - AluSg SINE Alu -9 301 1 1017 190 20 75 chrX 24411907 24412087 -138187843 - L1PB4 LINE L1 -84 6072 5905 1005 272 92 47 chrX 24412120 24413048 -138186882 - L1ME LINE L1 -857 5289 4321 * 1728 263 31 29 chrX 24413044 24413614 -138186316 - L1MB7 LINE L1 -3 6181 5608 2439 90 0 3 chrX 24413614 24413926 -138186004 - AluSp SINE Alu 0 313 3 1728 263 31 29 chrX 24413926 24414096 -138185834 - L1MB7 LINE L1 -576 5608 5440 1780 152 0 31 chrX 24414097 24414386 -138185544 + AluJb SINE Alu 1 280 -32 183 42 0 0 chrX 24414386 24414410 -138185520 + (TTAAA)n Simple_repeat Simple_repeat 2 25 0 1587 256 71 56 chrX 24414422 24414576 -138185354 - L1MB7 LINE L1 -1 6183 6033 2201 121 13 0 chrX 24414576 24414883 -138185047 + AluSx SINE Alu 1 311 -1 1587 256 71 56 chrX 24414883 24415273 -138184657 - L1MB7 LINE L1 -151 6033 5650 2270 109 0 6 chrX 24415273 24415585 -138184345 + AluSg SINE Alu 1 310 0 1587 256 71 56 chrX 24415585 24416689 -138183241 - L1MB7 LINE L1 -534 5650 4517 389 278 87 23 chrX 24416691 24417107 -138182823 - L1ME LINE L1 -351 5815 5358 663 253 55 0 chrX 24417131 24417388 -138182542 - L1ME LINE L1 -1560 4586 4316 1169 296 48 12 chrX 24417433 24418021 -138181909 - L1MB7 LINE L1 -60 6124 5516 1139 242 74 55 chrX 24418021 24418438 -138181492 + L1MD2 LINE L1 5812 6236 -123 924 161 32 37 chrX 24418441 24418659 -138181271 - L1MB2 LINE L1 -2 6169 5953 384 22 0 0 chrX 24418659 24418704 -138181226 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 2364 90 0 0 chrX 24418704 24419014 -138180916 - AluSg SINE Alu 0 310 1 2875 147 35 39 chrX 24419014 24419557 -138180373 - L1MB2 LINE L1 -215 5968 5428 * 5961 145 20 26 chrX 24419553 24420624 -138179306 - L1MA9 LINE L1 0 6312 5250 1921 131 134 33 chrX 24420624 24421013 -138178917 - MSTA LTR MaLR 0 428 1 5961 145 20 26 chrX 24421013 24421241 -138178689 - L1MA9 LINE L1 -1062 5250 5022 671 161 0 0 chrX 24421241 24421355 -138178575 + L1MD1 LINE L1 6117 6240 -2 225 80 40 20 chrX 24422368 24422418 -138177512 + CT-rich Low_complexity Low_complexity 2 52 0 276 30 0 0 chrX 24422421 24422454 -138177476 + (TG)n Simple_repeat Simple_repeat 2 34 0 2527 212 51 47 chrX 24422641 24423186 -138176744 - MER76 LTR ERV 0 688 147 2336 91 10 0 chrX 24423186 24423483 -138176447 + AluSx SINE Alu 1 300 -12 378 0 0 0 chrX 24423483 24423525 -138176405 + (TA)n Simple_repeat Simple_repeat 2 43 0 2527 212 51 47 chrX 24423525 24423663 -138176267 - MER76 LTR ERV -540 148 1 2220 226 53 13 chrX 24424244 24424926 -138175004 - L1MB2 LINE L1 -785 5361 4653 197 321 125 24 chrX 24425427 24425595 -138174335 + MIR SINE MIR 53 237 -25 188 312 0 52 chrX 24426366 24426443 -138173487 - MIR SINE MIR -178 84 12 853 258 15 49 chrX 24426728 24426992 -138172938 + MLT1E LTR MaLR 22 276 -317 441 186 12 0 chrX 24426994 24427080 -138172850 + MLT1F1 LTR MaLR 481 567 0 811 250 77 15 chrX 24427530 24427790 -138172140 - MLT1B LTR MaLR 0 467 192 775 122 0 0 chrX 24427832 24427947 -138171983 - AluSc SINE Alu -7 302 188 852 196 18 0 chrX 24427947 24428115 -138171815 - MLT1B LTR MaLR -219 171 1 265 304 180 37 chrX 24428703 24428864 -138171066 + MIR SINE MIR 8 191 -71 213 345 127 0 chrX 24429197 24429339 -138170591 - MIR SINE MIR -55 207 48 26 0 0 0 chrX 24431134 24431160 -138168770 + AT_rich Low_complexity Low_complexity 1 26 0 188 86 29 0 chrX 24431636 24431671 -138168259 + (TA)n Simple_repeat Simple_repeat 2 37 0 312 254 0 91 chrX 24432780 24432945 -138166985 + MIR SINE MIR 57 206 -56 797 196 0 12 chrX 24432983 24433156 -138166774 + L1MA6 LINE L1 4316 4486 -1660 1325 199 14 36 chrX 24433156 24433433 -138166497 + AluJo SINE Alu 27 297 -15 4589 165 37 38 chrX 24433433 24433563 -138166367 + L1MA6 LINE L1 4485 4614 -1686 2061 115 7 0 chrX 24433563 24433842 -138166088 + AluSx SINE Alu 15 295 -17 4589 165 37 38 chrX 24433842 24434576 -138165354 + L1MA6 LINE L1 4614 5375 -925 2292 100 0 0 chrX 24434576 24434867 -138165063 + AluSc SINE Alu 5 295 -14 4589 165 37 38 chrX 24434867 24435286 -138164644 + L1MA6 LINE L1 5375 5793 -507 351 285 11 17 chrX 24435286 24435465 -138164465 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 2592 144 30 55 chrX 24435488 24435535 -138164395 + L1MA6 LINE L1 5783 5830 -470 2829 10 0 0 chrX 24435535 24435843 -138164087 + AluYa5 SINE Alu 1 308 -3 2592 144 30 55 chrX 24435843 24436303 -138163627 + L1MA6 LINE L1 5830 6277 -23 1163 113 0 0 chrX 24436541 24436716 -138163214 + AluSp SINE Alu 132 306 0 22 56 0 0 chrX 24437415 24437451 -138162479 + AT_rich Low_complexity Low_complexity 1 36 0 369 43 0 0 chrX 24437593 24437602 -138162328 + (CA)n Simple_repeat Simple_repeat 1 56 0 369 43 0 0 chrX 24437602 24437649 -138162281 + (CA)n Simple_repeat Simple_repeat 1 47 0 2346 62 3 7 chrX 24439606 24439895 -138160035 + AluSg SINE Alu 1 288 -22 198 71 0 0 chrX 24439909 24439937 -138159993 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 228 254 0 16 chrX 24440274 24440337 -138159593 + A-rich Low_complexity Low_complexity 3 64 0 27 73 0 0 chrX 24441008 24441063 -138158867 + AT_rich Low_complexity Low_complexity 1 55 0 289 203 0 16 chrX 24442330 24442394 -138157536 - LTR37B LTR ERV1 -398 70 8 21 36 0 0 chrX 24442781 24442809 -138157121 + AT_rich Low_complexity Low_complexity 1 28 0 2275 83 3 0 chrX 24443186 24443474 -138156456 - AluSp SINE Alu -24 289 1 238 250 0 0 chrX 24443478 24443526 -138156404 + (TG)n Simple_repeat Simple_repeat 2 49 0 1517 173 100 23 chrX 24443588 24443944 -138155986 - L1MB1 LINE L1 0 6168 5786 293 293 143 23 chrX 24444289 24444422 -138155508 - MIR SINE MIR -96 166 18 342 0 0 0 chrX 24444557 24444595 -138155335 + (TG)n Simple_repeat Simple_repeat 2 39 0 2316 67 0 0 chrX 24444771 24445071 -138154859 - L1PA5 LINE L1 -6 6148 5849 28911 69 4 0 chrX 24445072 24448811 -138151119 - L1P LINE L1 -2390 3756 4 2046 120 32 0 chrX 24448814 24449097 -138150833 - AluSq SINE Alu -19 294 3 369 83 44 83 chrX 24449113 24449293 -138150637 + (TTAAA)n Simple_repeat Simple_repeat 5 177 0 192 152 0 0 chrX 24449570 24449603 -138150327 + (TA)n Simple_repeat Simple_repeat 1 33 0 248 111 0 0 chrX 24449612 24449657 -138150273 - LTR66 LTR ERVL -172 438 394 642 308 79 7 chrX 24450102 24450394 -138149536 + MLT1I LTR MaLR 96 408 -1 702 293 68 43 chrX 24451825 24452221 -138147709 + MLT1I LTR MaLR 1 406 -3 2400 114 22 6 chrX 24452245 24452603 -138147327 - THE1B LTR MaLR 0 364 1 1611 228 96 64 chrX 24453140 24453764 -138146166 + L1MC4 LINE L1 6579 7182 -860 1218 189 49 35 chrX 24453764 24453874 -138146056 + AluJo SINE Alu 2 109 -193 441 0 0 0 chrX 24453874 24453923 -138146007 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1218 189 49 35 chrX 24453923 24453943 -138145987 + AluJo SINE Alu 109 127 -175 1894 153 0 3 chrX 24453943 24454231 -138145699 + AluSx SINE Alu 3 289 -23 1147 76 12 12 chrX 24454236 24454408 -138145522 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 1218 189 49 35 chrX 24454408 24454556 -138145374 + AluJo SINE Alu 130 291 -11 1611 228 96 64 chrX 24454556 24454568 -138145362 + L1MC4 LINE L1 7182 7192 -850 23 0 0 0 chrX 24454568 24454591 -138145339 + AT_rich Low_complexity Low_complexity 1 23 0 1611 228 96 64 chrX 24454591 24455084 -138144846 + L1MC4 LINE L1 7192 7760 -282 1963 122 7 7 chrX 24455084 24455372 -138144558 + AluJb SINE Alu 11 298 -14 1611 228 96 64 chrX 24455372 24455537 -138144393 + L1MC4 LINE L1 7760 7918 -124 518 348 147 12 chrX 24455682 24456104 -138143826 + L2 LINE L2 1909 2387 -927 268 152 288 0 chrX 24456226 24456292 -138143638 - L2 LINE L2 0 3313 3229 182 298 40 111 chrX 24456568 24456793 -138143137 + L2 LINE L2 2678 2886 -428 1752 129 17 28 chrX 24457667 24458012 -138141918 - MER61B LTR ERV1 0 425 1 828 275 35 72 chrX 24459447 24459533 -138140397 - MLT1I LTR MaLR -2 407 319 2404 61 0 0 chrX 24459533 24459839 -138140091 - AluSg SINE Alu 0 306 1 828 275 35 72 chrX 24459839 24460126 -138139804 - MLT1I LTR MaLR -90 319 47 195 42 0 0 chrX 24460155 24460179 -138139751 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 775 157 0 0 chrX 24460182 24460297 -138139633 - FLAM_C SINE Alu -18 115 1 219 327 109 10 chrX 24461416 24461517 -138138413 - L2 LINE L2 -8 3264 3154 2726 106 22 26 chrX 24461569 24462023 -138137907 + L1MA5 LINE L1 5844 6295 -5 231 61 0 0 chrX 24462140 24462173 -138137757 + LTR49 LTR ERV1 1 33 -562 4010 107 14 87 chrX 24462173 24462475 -138137455 - MER39B LTR ERV1 0 653 331 2137 100 7 0 chrX 24462475 24462816 -138137114 - AluSp SINE Alu 0 343 1 4010 107 14 87 chrX 24462816 24462839 -138137091 - MER39B LTR ERV1 -322 331 308 5935 114 16 19 chrX 24462839 24463682 -138136248 - L1PA16 LINE L1 -9 6157 5323 2515 7 0 0 chrX 24463682 24463955 -138135975 - AluYa5 SINE Alu -3 308 36 5935 114 16 19 chrX 24463955 24464664 -138135266 - L1PA16 LINE L1 -843 5323 4614 4010 107 14 87 chrX 24464664 24465040 -138134890 - MER39B LTR ERV1 -345 308 1 2858 157 59 9 chrX 24465040 24465572 -138134358 + LTR49 LTR ERV1 31 589 -6 272 239 28 14 chrX 24465633 24465704 -138134226 - Charlie8 DNA MER1_type -2317 100 29 473 284 33 76 chrX 24466192 24466467 -138133463 - LTR16A1 LTR ERVL -88 369 107 765 202 40 17 chrX 24466631 24466802 -138133128 + MSTA LTR MaLR 1 175 -253 1161 162 25 30 chrX 24466802 24467037 -138132893 - THE1C LTR MaLR 0 375 142 287 77 0 0 chrX 24467014 24467053 -138132877 - THE1C LTR MaLR -389 39 1 * 10085 122 47 6 chrX 24467053 24468571 -138131359 - THE1C-int LTR MaLR 0 1580 1 1739 140 75 28 chrX 24468571 24468929 -138131001 - THE1C LTR MaLR 0 375 1 1100 156 156 13 chrX 24468929 24468969 -138130961 + MSTA LTR MaLR 171 204 -224 756 33 0 0 chrX 24468969 24469060 -138130870 + (TC)n Simple_repeat Simple_repeat 1 91 0 1100 156 156 13 chrX 24469060 24469243 -138130687 + MSTA LTR MaLR 204 426 -2 716 277 44 44 chrX 24469612 24469977 -138129953 - LTR24B LTR ERV1 -5 571 207 366 197 18 26 chrX 24470016 24470116 -138129814 - LTR24B LTR ERV1 -368 97 1 777 254 124 9 chrX 24470974 24471191 -138128739 + LTR16A LTR ERVL 104 345 -105 363 297 95 27 chrX 24471246 24471394 -138128536 + HERV16 LTR ERVL 2 159 -4837 642 120 46 0 chrX 24471417 24471525 -138128405 - L1MA6 LINE L1 -9 6291 6179 525 187 11 0 chrX 24471553 24471644 -138128286 - AluJ/FLAM SINE Alu -220 92 1 1703 161 0 0 chrX 24471645 24471931 -138127999 - L1MA6 LINE L1 -110 6190 5905 2586 134 26 16 chrX 24471946 24472372 -138127558 + Tigger1 DNA MER2_type 30 459 -1959 2140 148 46 0 chrX 24472356 24472729 -138127201 + Tigger1 DNA MER2_type 2028 2417 -1 * 3345 154 27 9 chrX 24472730 24474349 -138125581 - L1MA6 LINE L1 -394 5906 4217 2132 202 78 12 chrX 24474343 24475029 -138124901 - L1M4 LINE L1 -3441 4124 3356 * 452 303 21 0 chrX 24475029 24475174 -138124756 + HERV16 LTR ERVL 145 292 -4704 574 193 143 0 chrX 24475198 24475338 -138124592 + MER58C DNA MER1_type 56 215 0 588 312 9 23 chrX 24475342 24475557 -138124373 + HERV16 LTR ERVL 311 522 -4474 * 709 351 78 33 chrX 24475554 24476498 -138123432 + MERVL LTR ERVL 3005 3991 -1494 465 257 121 14 chrX 24476573 24476713 -138123217 + MERVL LTR ERVL 4143 4297 -1467 617 299 119 42 chrX 24476729 24477411 -138122519 + LTR41 LTR ERVL 15 748 -25 356 308 69 6 chrX 24478746 24478905 -138121025 - LTR16A LTR ERVL -179 271 103 267 341 61 23 chrX 24479501 24479715 -138120215 - HERV16 LTR ERVL -752 4902 4681 1778 29 0 0 chrX 24479757 24479966 -138119964 - L1PA3 LINE L1 0 6155 5947 628 143 0 10 chrX 24480082 24480180 -138119750 + MSTA LTR MaLR 1 97 -331 1017 138 117 11 chrX 24480184 24480372 -138119558 + MSTA LTR MaLR 221 428 0 2641 314 47 46 chrX 24480372 24481134 -138118796 - HERV16 LTR ERVL -1199 4565 3805 2481 67 0 3 chrX 24481134 24481433 -138118497 + AluY SINE Alu 1 298 -13 2641 314 47 46 chrX 24481433 24482393 -138117537 - HERV16 LTR ERVL -1959 3805 2754 367 296 53 0 chrX 24482384 24482516 -138117414 - HERV16 LTR ERVL -4596 400 262 * 3619 182 53 14 chrX 24482568 24483359 -138116571 - L1MB8 LINE L1 -2 6176 5355 709 231 17 97 chrX 24483410 24483648 -138116282 - HERV16 LTR ERVL -4777 219 1 845 314 76 7 chrX 24483649 24484069 -138115861 - LTR16A LTR ERVL -1 449 1 21 36 0 0 chrX 24484360 24484388 -138115542 + AT_rich Low_complexity Low_complexity 1 28 0 2651 97 13 8 chrX 24485168 24485541 -138114389 - THE1C LTR MaLR 0 375 1 279 133 0 0 chrX 24485662 24485707 -138114223 + (CA)n Simple_repeat Simple_repeat 2 46 0 597 172 60 9 chrX 24486007 24486123 -138113807 - FLAM_C SINE Alu -17 126 5 420 66 0 6 chrX 24486205 24486265 -138113665 + MLT2A1 LTR ERVL 392 444 0 2514 188 38 11 chrX 24486265 24486818 -138113112 - L1MB8 LINE L1 -2059 4087 3520 1894 182 48 116 chrX 24486818 24487515 -138112415 - MER61E LTR ERV1 0 779 1 4118 230 29 16 chrX 24487517 24488679 -138111251 - L1MB8 LINE L1 -2625 3521 2344 360 0 0 0 chrX 24488695 24488735 -138111195 + (TA)n Simple_repeat Simple_repeat 2 41 0 2474 185 42 18 chrX 24488743 24489048 -138110882 - LTR54 LTR ERV1 0 510 187 377 135 52 31 chrX 24489048 24489144 -138110786 + L1MA4A LINE L1 6204 6301 -2 2474 185 42 18 chrX 24489144 24489336 -138110594 - LTR54 LTR ERV1 -323 187 1 22 0 0 0 chrX 24489573 24489595 -138110335 + AT_rich Low_complexity Low_complexity 1 22 0 1876 26 18 0 chrX 24489825 24490051 -138109879 - L1PA4 LINE L1 -2 6153 5924 459 0 0 0 chrX 24490095 24490146 -138109784 + (CA)n Simple_repeat Simple_repeat 2 52 0 192 330 130 0 chrX 24490196 24490296 -138109634 - L2 LINE L2 -4 3268 3156 330 282 26 34 chrX 24490962 24491079 -138108851 + MIR SINE MIR 73 188 -74 301 136 37 49 chrX 24491095 24491176 -138108754 + MER116 DNA Mariner 1 80 0 310 298 73 48 chrX 24492167 24492415 -138107515 - L3b LINE CR1 -228 1355 1102 1052 274 97 65 chrX 24492706 24493242 -138106688 + MLT1H1 LTR MaLR 1 553 -2 232 233 150 0 chrX 24493557 24493617 -138106313 + MLT1H1 LTR MaLR 206 274 -281 198 0 0 0 chrX 24494382 24494404 -138105526 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 261 0 0 0 chrX 24494403 24494432 -138105498 + (CA)n Simple_repeat Simple_repeat 1 29 0 186 43 0 0 chrX 24494992 24495015 -138104915 + (TC)n Simple_repeat Simple_repeat 2 24 0 1046 250 0 18 chrX 24495058 24495282 -138104648 - AluJo SINE Alu -92 220 1 1458 265 58 14 chrX 24495422 24495857 -138104073 + MER69 DNA AcHobo 1 455 -2071 3741 138 63 78 chrX 24495857 24496654 -138103276 - LTR1 LTR ERV1 0 785 1 1856 250 46 49 chrX 24496698 24497351 -138102579 + MER69 DNA AcHobo 453 1103 -1423 255 277 48 26 chrX 24497411 24497543 -138102387 + MIR SINE MIR 21 151 -73 7259 142 14 7 chrX 24498723 24500723 -138099207 + L1PA10 LINE L1 4164 6166 -2 1411 193 33 95 chrX 24500723 24500764 -138099166 + Charlie1 DNA MER1_type 2266 2308 -453 423 0 0 0 chrX 24500764 24500811 -138099119 + (CA)n Simple_repeat Simple_repeat 2 48 0 1411 193 33 95 chrX 24500811 24501287 -138098643 + Charlie1 DNA MER1_type 2308 2751 -10 1168 194 76 7 chrX 24502027 24502315 -138097615 - MER33 DNA MER1_type -16 308 1 2025 116 17 3 chrX 24502738 24503032 -138096898 - AluSx SINE Alu -14 298 1 230 160 40 0 chrX 24503208 24503258 -138096672 - L2 LINE L2 0 3313 3262 2748 244 60 81 chrX 24503322 24504651 -138095279 - L1MD3 LINE L1 -27 7968 6667 1669 157 89 19 chrX 24504692 24505005 -138094925 + MER1B DNA MER1_type 3 337 0 315 372 148 22 chrX 24505108 24505385 -138094545 + L2 LINE L2 1104 1415 -1899 210 71 0 0 chrX 24505444 24505472 -138094458 + (CA)n Simple_repeat Simple_repeat 2 29 0 1026 238 19 0 chrX 24505962 24506176 -138093754 + MER20 DNA MER1_type 2 219 0 534 337 76 37 chrX 24506264 24506833 -138093097 + L2 LINE L2 1791 2381 -933 325 288 92 50 chrX 24507086 24507277 -138092653 + L2 LINE L2 2790 2986 -327 500 240 16 8 chrX 24507323 24507444 -138092486 + L1ME LINE L1 5493 5614 -556 482 127 13 0 chrX 24507548 24507627 -138092303 + MADE1 DNA Mariner 1 80 0 279 0 0 0 chrX 24509134 24509165 -138090765 + (TA)n Simple_repeat Simple_repeat 1 31 0 4243 127 57 0 chrX 24509166 24509838 -138090092 - L1PA16 LINE L1 -9 6157 5448 23 33 0 0 chrX 24510597 24510627 -138089303 + AT_rich Low_complexity Low_complexity 1 30 0 760 155 0 0 chrX 24511976 24512092 -138087838 - FLAM_C SINE Alu -17 116 1 222 62 0 0 chrX 24512140 24512172 -138087758 + (TA)n Simple_repeat Simple_repeat 1 32 0 181 130 65 0 chrX 24512625 24512671 -138087259 + CT-rich Low_complexity Low_complexity 1 49 0 187 281 8 107 chrX 24512765 24512886 -138087044 - MIR SINE MIR -56 206 98 2027 109 6 34 chrX 24513566 24513888 -138086042 - AluSq SINE Alu 0 313 1 2379 126 55 36 chrX 24513899 24513951 -138085979 - L1MB3 LINE L1 -1 6182 6132 2354 91 3 0 chrX 24513951 24514247 -138085683 - AluSq SINE Alu -16 297 1 2379 126 55 36 chrX 24514247 24514663 -138085267 - L1MB3 LINE L1 -51 6132 5705 21 36 0 0 chrX 24516024 24516052 -138083878 + AT_rich Low_complexity Low_complexity 1 28 0 1492 290 58 8 chrX 24516083 24516587 -138083343 + L2 LINE L2 1947 2475 -839 310 303 166 42 chrX 24516574 24516858 -138083072 + L2 LINE L2 2951 3269 -44 * 1829 129 25 0 chrX 24516874 24516995 -138082935 + AluSx SINE Alu 1 117 -198 243 0 0 0 chrX 24516995 24517022 -138082908 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1829 129 25 0 chrX 24517022 24517208 -138082722 + AluSx SINE Alu 117 315 0 26 64 0 0 chrX 24519157 24519204 -138080726 + AT_rich Low_complexity Low_complexity 1 47 0 622 249 42 82 chrX 24519540 24519945 -138079985 + LTR15 LTR ERV1 105 493 0 3887 170 10 44 chrX 24519990 24520822 -138079108 + L1ME1 LINE L1 5470 6236 -50 355 275 41 102 chrX 24520873 24521335 -138078595 + L1ME3A LINE L1 5681 6114 -56 1524 142 0 0 chrX 24522087 24522306 -138077624 - AluJb SINE Alu -13 299 81 2203 121 0 0 chrX 24522566 24522863 -138077067 + AluSx SINE Alu 1 297 -15 2055 92 78 0 chrX 24523202 24523483 -138076447 - AluSp SINE Alu -10 303 1 262 200 109 18 chrX 24523799 24523909 -138076021 - Zaphod DNA AcHobo -302 3729 3610 * 290 182 141 79 chrX 24523900 24524191 -138075739 - Zaphod DNA AcHobo -3023 1008 700 290 266 101 18 chrX 24524191 24524300 -138075630 - Zaphod DNA AcHobo -3905 126 9 209 294 15 15 chrX 24525664 24525732 -138074198 + L2 LINE L2 3205 3272 0 23 54 0 0 chrX 24526568 24526605 -138073325 + AT_rich Low_complexity Low_complexity 1 37 0 510 139 40 0 chrX 24527379 24527530 -138072400 + (TA)n Simple_repeat Simple_repeat 1 157 0 2321 87 0 0 chrX 24527530 24527819 -138072111 - AluSx SINE Alu -23 289 1 26 50 0 0 chrX 24529532 24529572 -138070358 + AT_rich Low_complexity Low_complexity 1 40 0 247 336 161 7 chrX 24530213 24530350 -138069580 - MIR SINE MIR -10 252 95 273 146 0 0 chrX 24531518 24531566 -138068364 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 32 0 0 chrX 24531575 24531606 -138068324 + AT_rich Low_complexity Low_complexity 1 31 0 1430 314 36 6 chrX 24531742 24532246 -138067684 + HERVL LTR ERVL 2181 2699 -2297 430 113 0 0 chrX 24532532 24532594 -138067336 + L1P LINE L1 5186 5247 -899 20759 53 0 3 chrX 24532609 24536046 -138063884 - L1PA6 LINE L1 -17 6137 2707 568 315 5 12 chrX 24536065 24536255 -138063675 + HERVL LTR ERVL 3002 3189 -1900 29 47 0 0 chrX 24536498 24536541 -138063389 + AT_rich Low_complexity Low_complexity 1 43 0 368 20 0 20 chrX 24536666 24536716 -138063214 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 27 0 0 0 chrX 24537065 24537092 -138062838 + AT_rich Low_complexity Low_complexity 1 27 0 280 335 66 6 chrX 24537653 24537820 -138062110 - MLT1K LTR MaLR -34 554 378 198 380 13 0 chrX 24539536 24539615 -138060315 + MIR SINE MIR 73 152 -110 482 374 6 0 chrX 24539727 24539898 -138060032 - MER91A DNA MER1_type -13 183 12 595 103 9 9 chrX 24540135 24540242 -138059688 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 258 95 0 0 chrX 24540539 24540581 -138059349 + (GA)n Simple_repeat Simple_repeat 1 42 0 417 220 22 0 chrX 24540584 24540675 -138059255 - MLT2F LTR ERVL -55 608 516 299 331 63 16 chrX 24540704 24540831 -138059099 - MLT2F LTR ERVL -353 310 178 798 266 44 57 chrX 24541107 24541495 -138058435 + L1MC/D LINE L1 5299 5681 -2127 * 3813 199 52 26 chrX 24541476 24542475 -138057455 + L1MB3 LINE L1 5096 6137 -46 536 284 68 72 chrX 24542812 24542866 -138057064 + L1ME3A LINE L1 5489 5542 -628 1694 188 7 3 chrX 24542866 24543169 -138056761 + AluJb SINE Alu 4 307 -5 536 284 68 72 chrX 24543169 24543332 -138056598 + L1ME3A LINE L1 5542 5704 -466 2208 48 0 7 chrX 24543332 24543602 -138056328 + AluY SINE Alu 38 305 -6 536 284 68 72 chrX 24543602 24543841 -138056089 + L1ME3A LINE L1 5704 5944 -226 327 344 47 42 chrX 24543919 24544111 -138055819 + L1ME3A LINE L1 5977 6169 -1 21 0 0 0 chrX 24544605 24544626 -138055304 + AT_rich Low_complexity Low_complexity 1 21 0 314 365 62 10 chrX 24545077 24545285 -138054645 - MIR SINE MIR -10 252 34 441 300 47 11 chrX 24545343 24545533 -138054397 - LTR33A LTR ERVL -2 521 325 4494 148 12 12 chrX 24545533 24546926 -138053004 + L1PA15 LINE L1 4512 5907 -258 585 317 44 0 chrX 24547649 24547832 -138052098 - MIR SINE MIR -28 234 44 21 71 0 0 chrX 24548178 24548220 -138051710 + AT_rich Low_complexity Low_complexity 1 42 0 198 277 27 80 chrX 24549121 24549233 -138050697 + MIR SINE MIR 86 191 -71 3053 210 44 49 chrX 24549933 24550372 -138049558 - L1M2 LINE L1 -4738 2471 2031 2287 103 0 3 chrX 24550372 24550672 -138049258 - AluSq SINE Alu -14 299 1 3053 210 44 49 chrX 24550672 24551813 -138048117 - L1M2 LINE L1 -5178 2031 1 22 35 0 0 chrX 24552841 24552870 -138047060 + AT_rich Low_complexity Low_complexity 1 29 0 362 252 29 10 chrX 24552949 24553052 -138046878 - L1ME LINE L1 -400 5721 5617 31 0 0 0 chrX 24553260 24553291 -138046639 + AT_rich Low_complexity Low_complexity 1 31 0 11476 130 11 25 chrX 24553599 24554044 -138045886 + Tigger1 DNA MER2_type 2 452 -1966 2027 131 0 39 chrX 24554044 24554356 -138045574 - AluSx SINE Alu -10 302 3 11476 130 11 25 chrX 24554356 24556362 -138043568 + Tigger1 DNA MER2_type 452 2418 0 502 261 149 37 chrX 24557259 24557420 -138042510 - MER5A DNA MER1_type -1 188 10 389 280 70 91 chrX 24558735 24559019 -138040911 - LTR16C LTR ERVL -88 403 125 2109 74 64 3 chrX 24559019 24559302 -138040628 + AluSq SINE Alu 1 300 -13 389 280 70 91 chrX 24559302 24559346 -138040584 - LTR16C LTR ERVL -366 125 82 308 24 24 0 chrX 24559794 24559835 -138040095 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4528 39 4 0 chrX 24559835 24560377 -138039553 - L1PA5 LINE L1 -11 6143 5600 219 103 0 0 chrX 24560507 24560546 -138039384 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2043 174 60 19 chrX 24560953 24561368 -138038562 + MSTB1 LTR MaLR 1 432 0 296 266 133 27 chrX 24561982 24562170 -138037760 + MLT1K LTR MaLR 381 588 0 237 83 0 0 chrX 24563396 24563432 -138036498 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 65 0 0 chrX 24563474 24563520 -138036410 + AT_rich Low_complexity Low_complexity 1 46 0 2235 111 0 0 chrX 24563576 24563874 -138036056 + AluSx SINE Alu 3 300 -12 236 300 0 11 chrX 24563974 24564064 -138035866 - L1MC4 LINE L1 -1339 6703 6615 * 250 259 111 0 chrX 24563996 24564077 -138035853 + L1MC4 LINE L1 6614 6703 -1339 746 265 10 25 chrX 24564085 24564281 -138035649 - MIR SINE MIR -30 232 40 334 218 165 68 chrX 24564433 24564566 -138035364 + MIR SINE MIR 3 148 -114 257 318 0 71 chrX 24566204 24566330 -138033600 + ERVL LTR ERVL 1503 1619 -4035 183 204 0 0 chrX 24566743 24566792 -138033138 + (TATG)n Simple_repeat Simple_repeat 4 52 0 307 353 25 14 chrX 24566887 24567198 -138032732 + ERVL LTR ERVL 2311 2607 -2389 308 292 62 56 chrX 24567564 24567759 -138032171 - L2 LINE L2 0 3313 3118 267 356 139 9 chrX 24567884 24568114 -138031816 - L2 LINE L2 -348 2966 2707 342 209 48 29 chrX 24568114 24568219 -138031711 + ERVL LTR ERVL 2435 2541 -3223 521 385 65 44 chrX 24568255 24568616 -138031314 - L2 LINE L2 -652 2662 2279 3112 152 30 23 chrX 24568616 24569215 -138030715 + L1MB3 LINE L1 5579 6181 -2 521 385 65 44 chrX 24569215 24569530 -138030400 - L2 LINE L2 -1035 2279 1972 1100 366 57 17 chrX 24569603 24570311 -138029619 - ERVL LTR ERVL -1779 3706 3002 21 0 0 0 chrX 24570832 24570853 -138029077 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chrX 24571553 24571583 -138028347 + (CA)n Simple_repeat Simple_repeat 2 31 0 183 322 102 0 chrX 24572099 24572158 -138027772 + MIR3 SINE MIR 108 172 -36 22 0 0 0 chrX 24572206 24572228 -138027702 + AT_rich Low_complexity Low_complexity 1 22 0 1729 194 0 3 chrX 24572303 24572613 -138027317 - AluJo SINE Alu -3 309 1 303 263 52 113 chrX 24574031 24574244 -138025686 + LTR16A1 LTR ERVL 145 344 -113 5666 151 16 15 chrX 24575481 24576830 -138023100 + L1MA4 LINE L1 4828 6180 -120 2171 148 15 0 chrX 24576830 24577162 -138022768 - MER1B DNA MER1_type 0 337 1 5666 151 16 15 chrX 24577162 24577283 -138022647 + L1MA4 LINE L1 6180 6299 -1 1369 179 107 0 chrX 24577635 24577898 -138022032 + AluJo SINE Alu 1 291 -21 252 340 65 20 chrX 24578305 24578458 -138021472 - MIR3 SINE MIR -11 197 38 217 324 15 0 chrX 24578973 24579041 -138020889 - MIR SINE MIR -98 164 96 356 331 37 55 chrX 24579148 24579289 -138020641 + L1MC4a LINE L1 5560 5702 -2106 267 31 0 0 chrX 24579289 24579321 -138020609 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 2147 87 3 7 chrX 24579321 24579608 -138020322 - AluSx SINE Alu -26 286 1 356 331 37 55 chrX 24579608 24579737 -138020193 + L1MC4a LINE L1 5700 5826 -1982 489 228 98 62 chrX 24579773 24579966 -138019964 - L2 LINE L2 0 3313 3114 21 0 0 0 chrX 24580263 24580284 -138019646 + AT_rich Low_complexity Low_complexity 1 21 0 197 346 75 23 chrX 24580704 24580837 -138019093 + L2 LINE L2 2765 2904 -410 291 350 79 17 chrX 24581694 24581871 -138018059 - MIR SINE MIR -56 206 19 955 225 14 14 chrX 24582788 24583006 -138016924 + MER20 DNA MER1_type 2 219 0 21 36 0 0 chrX 24583611 24583639 -138016291 + AT_rich Low_complexity Low_complexity 1 28 0 5072 114 16 1 chrX 24583684 24584430 -138015500 + L1PA16 LINE L1 5401 6157 -9 22 0 0 0 chrX 24584430 24584452 -138015478 + AT_rich Low_complexity Low_complexity 1 22 0 228 234 86 132 chrX 24585107 24585304 -138014626 + MIR3 SINE MIR 16 203 -5 433 310 32 7 chrX 24585506 24585661 -138014269 + MIR SINE MIR 7 165 -97 1911 130 0 18 chrX 24585976 24586261 -138013669 + AluSx SINE Alu 1 280 -32 972 77 26 7 chrX 24586263 24586418 -138013512 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 192 145 32 32 chrX 24587891 24587953 -138011977 + GA-rich Low_complexity Low_complexity 2 63 0 25 31 0 0 chrX 24588061 24588093 -138011837 + AT_rich Low_complexity Low_complexity 1 32 0 196 250 0 88 chrX 24588883 24588951 -138010979 - MIR SINE MIR -6 256 195 729 339 96 18 chrX 24589022 24589703 -138010227 - L2 LINE L2 -5 3308 2556 1428 179 7 29 chrX 24589811 24590084 -138009846 + AluJo SINE Alu 1 267 -45 180 0 0 0 chrX 24590092 24590112 -138009818 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 8501 219 40 39 chrX 24591374 24594113 -138005817 + L1M4 LINE L1 2563 5305 -841 426 169 0 1 chrX 24594151 24594239 -138005691 - L1P5 LINE L1 -383 5768 5682 241 349 0 0 chrX 24594239 24594302 -138005628 + (CA)n Simple_repeat Simple_repeat 1 63 0 230 316 0 0 chrX 24594306 24594385 -138005545 + L1MC4 LINE L1 6622 6700 -1342 * 2005 214 44 8 chrX 24594367 24594848 -138005082 + L1MA9 LINE L1 5777 6274 -38 4059 172 9 31 chrX 24594878 24596503 -138003427 - L1PA13 LINE L1 -5 6158 4530 5123 138 21 7 chrX 24596514 24597370 -138002560 + L1MB8 LINE L1 5311 6178 0 283 198 73 31 chrX 24648079 24648175 -137951755 - HAL1 LINE L1 -467 2040 1941 732 263 93 48 chrX 24648203 24648720 -137951210 - HAL1 LINE L1 -1048 1459 920 378 331 12 45 chrX 24648796 24649038 -137950892 + L2 LINE L2 3080 3313 0 422 299 140 62 chrX 24649393 24649858 -137950072 - MLT1J LTR MaLR 0 511 11 1734 127 0 0 chrX 24649918 24650155 -137949775 + AluSx SINE Alu 63 299 -13 442 382 65 10 chrX 24650179 24650564 -137949366 - L3 LINE CR1 -504 1073 668 196 250 0 88 chrX 24651886 24651954 -137947976 - MIR SINE MIR -6 256 195 729 339 96 18 chrX 24652025 24652706 -137947224 - L2 LINE L2 -5 3308 2556 1428 179 7 29 chrX 24652814 24653087 -137946843 + AluJo SINE Alu 1 267 -45 180 0 0 0 chrX 24653095 24653115 -137946815 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 8090 207 37 50 chrX 24654376 24657115 -137942815 + L1MB8 LINE L1 2563 5305 -841 426 140 0 0 chrX 24657153 24657241 -137942689 - L1P5 LINE L1 -383 5768 5682 280 280 32 0 chrX 24657241 24657366 -137942564 + (CATATA)n Simple_repeat Simple_repeat 1 129 0 1974 214 44 8 chrX 24657369 24657850 -137942080 + L1MA9 LINE L1 5777 6274 -38 4059 172 9 31 chrX 24657880 24659505 -137940425 - L1PA13 LINE L1 -5 6158 4530 5093 138 21 7 chrX 24659516 24660372 -137939558 + L1MB8 LINE L1 5311 6178 0 2469 118 41 3 chrX 24661077 24661467 -137938463 - L1PA16 LINE L1 -10 6156 5752 451 163 116 12 chrX 24661469 24661555 -137938375 + 5S rRNA rRNA 2 96 -25 2258 80 13 13 chrX 24661984 24662286 -137937644 - AluSp SINE Alu -11 302 1 466 233 142 51 chrX 24662574 24662750 -137937180 - MLT1E2 LTR MaLR -371 255 64 1366 241 128 28 chrX 24662869 24663624 -137936306 - L1M4 LINE L1 -933 5213 4383 1400 236 23 19 chrX 24663639 24664067 -137935863 - L1M4 LINE L1 -1821 4325 3896 259 0 0 0 chrX 24664071 24664106 -137935824 + L1MA3 LINE L1 6271 6305 0 242 255 21 57 chrX 24664138 24664279 -137935651 - L1M4 LINE L1 -2255 3891 3756 682 183 15 0 chrX 24664303 24664434 -137935496 - L1MA9 LINE L1 -384 5928 5796 381 43 0 0 chrX 24664444 24664491 -137935439 + (TG)n Simple_repeat Simple_repeat 2 48 0 469 196 80 0 chrX 24664562 24664674 -137935256 + L1MA9 LINE L1 6154 6274 -38 1483 261 45 4 chrX 24664717 24665223 -137934707 - L1M4 LINE L1 -2433 3713 3187 514 298 72 52 chrX 24665261 24665566 -137934364 - L1ME LINE L1 -5350 720 410 379 316 72 34 chrX 24665645 24665908 -137934022 - L1ME LINE L1 -5792 278 6 1322 303 99 36 chrX 24666028 24666727 -137933203 - L2 LINE L2 -952 2362 1620 314 190 0 0 chrX 24666732 24666790 -137933140 - MER58A DNA MER1_type -5 219 162 521 232 27 0 chrX 24666809 24666921 -137933009 - MER58A DNA MER1_type 0 115 1 472 350 42 21 chrX 24666927 24667167 -137932763 - L2 LINE L2 -1694 1620 1376 30 0 0 0 chrX 24667961 24667991 -137931939 + AT_rich Low_complexity Low_complexity 1 30 0 2225 44 91 0 chrX 24668176 24668451 -137931479 + AluY SINE Alu 1 300 -11 549 249 224 10 chrX 24668516 24668721 -137931209 + MIR SINE MIR 1 249 -13 6533 83 32 0 chrX 24669799 24670826 -137929104 - L1PA10 LINE L1 -10 6158 5118 2404 241 98 4 chrX 24671098 24671518 -137928412 - L1ME1 LINE L1 -9 6157 5778 1480 229 5 111 chrX 24671518 24672095 -137927835 + MLT2B1 LTR ERVL 5 520 0 2404 241 98 4 chrX 24672095 24672399 -137927531 - L1ME1 LINE L1 -388 5778 5365 2101 261 63 54 chrX 24672474 24672513 -137927417 - L1ME1 LINE L1 -790 5356 5319 2094 119 17 0 chrX 24672513 24672807 -137927123 - AluSx SINE Alu -11 301 3 2101 261 63 54 chrX 24672807 24673441 -137926489 - L1ME1 LINE L1 -827 5319 4665 2577 34 0 0 chrX 24673441 24673738 -137926192 - AluYb8 SINE Alu -21 297 1 2101 261 63 54 chrX 24673738 24674307 -137925623 - L1ME1 LINE L1 -1481 4665 4102 372 318 84 43 chrX 24674717 24675158 -137924772 + L1MC4a LINE L1 3247 3705 -2441 1358 206 41 46 chrX 24675344 24675712 -137924218 - MER47A DNA MER2_type 0 366 1 604 314 126 19 chrX 24675785 24676260 -137923670 + L1MC4a LINE L1 4067 4592 -1554 1436 271 62 25 chrX 24676421 24677067 -137922863 + L1MC4a LINE L1 5265 5934 -1874 22 35 0 0 chrX 24678141 24678170 -137921760 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chrX 24678594 24678660 -137921270 + AT_rich Low_complexity Low_complexity 1 66 0 27 0 0 0 chrX 24678784 24678811 -137921119 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chrX 24678898 24678947 -137920983 + AT_rich Low_complexity Low_complexity 1 49 0 272 227 171 0 chrX 24679401 24679489 -137920441 - MIR SINE MIR -5 257 155 1844 273 85 15 chrX 24679539 24680341 -137919589 - L1ME3 LINE L1 -39 6123 5266 307 272 160 16 chrX 24680370 24680495 -137919435 - L1ME3 LINE L1 -955 5191 5049 873 214 92 80 chrX 24680527 24681050 -137918880 - L1ME3 LINE L1 -1296 4850 4322 234 0 0 0 chrX 24681382 24681408 -137918522 + (TTG)n Simple_repeat Simple_repeat 2 27 0 612 313 132 57 chrX 24681538 24682055 -137917875 + L2 LINE L2 2755 3309 -4 658 248 4 62 chrX 24682309 24682535 -137917395 - L1ME1 LINE L1 -7 6159 5947 1910 192 11 3 chrX 24682545 24682905 -137917025 - MLT1A1 LTR MaLR -2 363 1 200 188 0 0 chrX 24683319 24683351 -137916579 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 808 94 39 0 chrX 24683352 24683479 -137916451 - L1MB1 LINE L1 -4 6164 6033 2100 97 3 10 chrX 24683486 24683775 -137916155 - AluSq SINE Alu -15 298 12 21 0 0 0 chrX 24683866 24683887 -137916043 + AT_rich Low_complexity Low_complexity 1 21 0 1130 218 102 72 chrX 24684102 24684171 -137915759 - MLT1A2 LTR MaLR 0 374 309 1693 106 50 90 chrX 24684171 24684492 -137915438 + AluSx SINE Alu 1 308 -4 1130 218 102 72 chrX 24684492 24684785 -137915145 - MLT1A2 LTR MaLR -65 309 1 433 261 8 157 chrX 24684795 24685063 -137914867 - MIR SINE MIR 0 262 35 3307 196 35 78 chrX 24685084 24685546 -137914384 - L1MA6 LINE L1 -25 6275 5794 291 54 0 0 chrX 24685546 24685583 -137914347 + (TG)n Simple_repeat Simple_repeat 2 38 0 3307 196 35 78 chrX 24685583 24685935 -137913995 - L1MA6 LINE L1 -506 5794 5428 2269 84 3 0 chrX 24685935 24686222 -137913708 - AluY SINE Alu -23 288 1 3307 196 35 78 chrX 24686222 24686955 -137912975 - L1MA6 LINE L1 -872 5428 4793 1823 195 3 8 chrX 24686954 24687329 -137912601 + L1 LINE L1 3844 4216 -1930 * 22 56 0 0 chrX 24688951 24688987 -137910943 + AT_rich Low_complexity Low_complexity 1 36 0 246 324 65 14 chrX 24689440 24689579 -137910351 - L2 LINE L2 -1 3312 3167 2490 181 31 2 chrX 24689806 24690314 -137909616 + Charlie1b DNA MER1_type 1 523 0 247 361 0 0 chrX 24690960 24691021 -137908909 + L2 LINE L2 3118 3178 -94 3162 306 95 19 chrX 24691448 24692888 -137907042 + L2 LINE L2 927 2476 -838 272 339 77 5 chrX 24693087 24693282 -137906648 + LTR33 LTR ERVL 307 515 -6 1165 308 53 35 chrX 24693285 24694101 -137905829 + L2 LINE L2 2481 3313 0 331 130 19 0 chrX 24694320 24694374 -137905556 + MSTB LTR MaLR 1 55 -377 24 32 0 0 chrX 24695034 24695065 -137904865 + AT_rich Low_complexity Low_complexity 1 31 0 2233 107 0 3 chrX 24695352 24695662 -137904268 + AluSx SINE Alu 1 309 -3 896 179 0 37 chrX 24696140 24696326 -137903604 - AluJb SINE Alu 0 308 129 2049 128 10 0 chrX 24696463 24696761 -137903169 - AluSx SINE Alu -11 301 1 2024 130 3 3 chrX 24696765 24697099 -137902831 - AluSx SINE Alu 0 334 1 21 0 0 0 chrX 24697636 24697657 -137902273 + AT_rich Low_complexity Low_complexity 1 21 0 1873 188 38 5 chrX 24697701 24698069 -137901861 + MSTB LTR MaLR 47 426 0 422 238 155 33 chrX 24698469 24698650 -137901280 - L1ME3A LINE L1 -289 5881 5679 770 174 22 16 chrX 24699199 24699383 -137900547 + MER53 DNA DNA 5 189 0 603 168 0 0 chrX 24700283 24700402 -137899528 + GA-rich Low_complexity Low_complexity 2 120 0 265 275 0 12 chrX 24701995 24702075 -137897855 + CT-rich Low_complexity Low_complexity 2 80 0 21 36 0 0 chrX 24702984 24703012 -137896918 + AT_rich Low_complexity Low_complexity 1 28 0 1551 241 94 74 chrX 24703566 24704214 -137895716 + MLT2F LTR ERVL 3 663 0 462 36 0 0 chrX 24704319 24704375 -137895555 + (CA)n Simple_repeat Simple_repeat 2 57 0 2196 95 0 22 chrX 24704724 24705041 -137894889 + AluSg SINE Alu 1 310 0 246 116 0 0 chrX 24705276 24705319 -137894611 + (TC)n Simple_repeat Simple_repeat 1 43 0 1254 148 18 26 chrX 24705338 24705567 -137894363 + Tigger1 DNA MER2_type 2 228 -2190 1230 164 80 27 chrX 24705567 24705830 -137894100 - AluJo SINE Alu -15 297 21 4517 131 22 8 chrX 24705834 24706552 -137893378 + Tigger1 DNA MER2_type 215 942 -1476 2124 173 29 26 chrX 24706552 24706973 -137892957 - MSTB LTR MaLR 0 426 5 1943 174 24 29 chrX 24706596 24706975 -137892955 - MSTB LTR MaLR -47 379 3 8715 184 35 8 chrX 24706977 24708584 -137891346 - MSTB-int LTR MaLR 0 1651 1 324 70 0 0 chrX 24708588 24708631 -137891299 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1787 109 39 0 chrX 24708632 24708889 -137891041 - AluSg SINE Alu -39 271 5 2454 159 19 7 chrX 24708903 24709324 -137890606 - MSTB LTR MaLR 0 426 1 8922 144 10 8 chrX 24709328 24710798 -137889132 + Tigger1 DNA MER2_type 942 2415 -3 180 300 60 0 chrX 24711376 24711426 -137888504 + MIR3 SINE MIR 104 156 -52 41676 58 4 7 chrX 24711652 24717853 -137882077 + L1PA5 LINE L1 12 6194 0 1843 234 22 33 chrX 24718318 24718869 -137881061 + L1MC3 LINE L1 6031 6575 -1210 1485 171 9 73 chrX 24718869 24719197 -137880733 - LTR1 LTR ERV1 0 785 479 403 92 59 8 chrX 24719197 24719316 -137880614 + (TA)n Simple_repeat Simple_repeat 2 126 0 3693 211 109 73 chrX 24719362 24719869 -137880061 + L1MC3 LINE L1 6571 7058 -727 393 203 0 25 chrX 24719869 24719948 -137879982 + MLT1F1 LTR MaLR 35 111 -456 3693 211 109 73 chrX 24719948 24720513 -137879417 + L1MC3 LINE L1 7058 7763 -22 650 326 120 22 chrX 24720995 24721547 -137878383 - L2 LINE L2 -1437 1877 1272 1898 136 0 26 chrX 24721601 24721911 -137878019 + AluJo SINE Alu 1 302 -10 280 332 32 28 chrX 24722625 24722875 -137877055 - L1M4 LINE L1 -1857 4289 4039 544 302 54 61 chrX 24722880 24723304 -137876626 - L1M4 LINE L1 -2846 3300 2880 1829 231 72 48 chrX 24723532 24724057 -137875873 - MLT1F1 LTR MaLR -4 563 1 547 266 79 23 chrX 24724439 24724616 -137875314 + MLT1J2 LTR MaLR 1 187 -263 22 0 0 0 chrX 24725691 24725713 -137874217 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chrX 24727342 24727367 -137872563 + (GA)n Simple_repeat Simple_repeat 2 26 0 336 308 14 14 chrX 24727775 24727918 -137872012 - MLT1J LTR MaLR -45 466 324 280 368 7 35 chrX 24728201 24728345 -137871585 - L2 LINE L2 -1307 2007 1868 22 56 0 0 chrX 24728397 24728433 -137871497 + AT_rich Low_complexity Low_complexity 1 36 0 236 213 27 120 chrX 24728457 24728607 -137871323 + L1MB8 LINE L1 6035 6170 -8 329 235 20 31 chrX 24728948 24729046 -137870884 - MER69 DNA AcHobo 0 2526 2430 288 0 0 0 chrX 24729052 24729084 -137870846 + (TG)n Simple_repeat Simple_repeat 2 33 0 330 203 0 0 chrX 24729224 24729283 -137870647 - MER69 DNA AcHobo -2467 59 1 530 304 129 38 chrX 24730295 24730774 -137869156 - L2 LINE L2 -2 3311 2738 28 0 0 0 chrX 24730941 24730969 -137868961 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chrX 24731108 24731153 -137868777 + AT_rich Low_complexity Low_complexity 1 45 0 264 247 53 105 chrX 24731173 24731363 -137868567 - HsTC2 DNA Tc2 -1625 273 94 27 49 0 0 chrX 24732236 24732277 -137867653 + AT_rich Low_complexity Low_complexity 1 41 0 698 193 167 66 chrX 24732819 24733047 -137866883 + MIR SINE MIR 11 261 -1 180 0 0 0 chrX 24734722 24734742 -137865188 + (T)n Simple_repeat Simple_repeat 1 20 0 230 321 53 34 chrX 24734760 24735022 -137864908 - L1ME LINE L1 -343 5778 5512 249 242 66 11 chrX 24735315 24735406 -137864524 + L1MA9 LINE L1 6217 6312 0 21 57 0 0 chrX 24735591 24735626 -137864304 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 24736021 24736049 -137863881 + AT_rich Low_complexity Low_complexity 1 28 0 364 298 101 41 chrX 24736786 24737152 -137862778 - HAL1 LINE L1 -855 1652 1265 420 276 32 94 chrX 24737186 24737559 -137862371 - HAL1 LINE L1 -1345 1162 813 557 298 97 71 chrX 24738357 24738750 -137861180 - L1ME LINE L1 -1410 4736 4355 2132 77 37 27 chrX 24738750 24739049 -137860881 - AluSx SINE Alu -10 302 1 557 298 97 71 chrX 24739049 24739457 -137860473 - L1ME LINE L1 -1791 4355 3914 22 0 0 0 chrX 24739466 24739488 -137860442 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 24739596 24739619 -137860311 + AT_rich Low_complexity Low_complexity 1 23 0 698 287 74 46 chrX 24739779 24740211 -137859719 + LTR33A LTR ERVL 80 523 0 21 0 0 0 chrX 24741515 24741536 -137858394 + AT_rich Low_complexity Low_complexity 1 21 0 637 293 103 48 chrX 24742727 24743754 -137856176 + L1ME3A LINE L1 573 1648 -4567 336 267 70 32 chrX 24743867 24744054 -137855876 + L1ME3A LINE L1 2024 2217 -4179 1555 251 64 108 chrX 24744141 24744466 -137855464 + L1ME3A LINE L1 2279 2617 -3598 2087 106 3 0 chrX 24744466 24744781 -137855149 + AluSx SINE Alu 2 317 0 1555 251 64 108 chrX 24744781 24745330 -137854600 + L1ME3A LINE L1 2617 3189 -3026 2329 97 0 3 chrX 24745330 24745640 -137854290 + AluSg SINE Alu 1 309 -1 1555 251 64 108 chrX 24745640 24746800 -137853130 + L1ME3A LINE L1 3189 4225 -1990 899 299 42 3 chrX 24746886 24747241 -137852689 + L1ME3A LINE L1 4809 5177 -1038 370 285 0 9 chrX 24747307 24747465 -137852465 + L1ME3A LINE L1 5303 5457 -758 255 294 34 34 chrX 24747483 24747602 -137852328 + L1ME3A LINE L1 5984 6102 -137 632 177 0 32 chrX 24747666 24747790 -137852140 + L1ME3A LINE L1 6114 6233 -6 697 176 15 0 chrX 24748032 24748163 -137851767 + FLAM_A SINE Alu 1 133 0 1328 99 0 0 chrX 24748164 24748335 -137851595 + AluSg/x SINE Alu 115 285 -27 42 36 0 0 chrX 24748335 24748391 -137851539 + AT_rich Low_complexity Low_complexity 1 56 0 28 48 0 0 chrX 24748419 24748461 -137851469 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chrX 24748559 24748587 -137851343 + AT_rich Low_complexity Low_complexity 1 28 0 224 297 95 14 chrX 24750054 24750128 -137849802 - L2 LINE L2 -4 3268 3189 32 0 0 0 chrX 24750375 24750407 -137849523 + AT_rich Low_complexity Low_complexity 1 32 0 1649 106 0 0 chrX 24750412 24750629 -137849301 - AluSg/x SINE Alu -22 290 74 26 0 0 0 chrX 24751880 24751906 -137848024 + AT_rich Low_complexity Low_complexity 1 26 0 2582 44 0 0 chrX 24752143 24752462 -137847468 + L1PA4 LINE L1 5834 6152 -3 1063 172 19 184 chrX 24752584 24752996 -137846934 + LTR40b LTR ERVL 119 462 0 1268 173 0 30 chrX 24753363 24753594 -137846336 + AluJo SINE Alu 13 236 -76 1195 80 0 0 chrX 24753607 24753757 -137846173 - AluSg1 SINE Alu -159 150 1 2715 54 92 0 chrX 24754104 24754473 -137845457 + L1P LINE L1 2 404 -5742 4809 41 0 0 chrX 24754473 24755054 -137844876 + L1PA4 LINE L1 5573 6153 -2 274 235 41 100 chrX 24755258 24755428 -137844502 - L1ME2 LINE L1 -77 6087 5928 3028 235 63 11 chrX 24755462 24756587 -137843343 - L1ME1 LINE L1 -46 6120 4898 188 86 29 0 chrX 24756587 24756622 -137843308 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 3028 235 63 11 chrX 24756622 24757016 -137842914 - L1ME1 LINE L1 -1268 4898 4526 578 242 204 8 chrX 24757000 24757260 -137842670 - L1ME1 LINE L1 -1956 4190 3880 * 573 329 90 46 chrX 24757292 24757772 -137842158 + LTR33A LTR ERVL 3 503 -20 374 263 125 13 chrX 24758100 24758332 -137841598 + L1M4 LINE L1 2966 3223 -2923 910 227 120 91 chrX 24758456 24759271 -137840659 + L1MC5 LINE L1 7090 7928 -33 207 88 0 0 chrX 24759554 24759588 -137840342 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chrX 24759791 24759812 -137840118 + (TTA)n Simple_repeat Simple_repeat 2 22 0 814 207 11 27 chrX 24759845 24760033 -137839897 - AluJo SINE Alu -89 223 39 4106 152 122 36 chrX 24762017 24762995 -137836935 + pTR5 LTR ERV1 741 2030 -408 366 220 11 0 chrX 24762997 24763088 -137836842 + LTR30 LTR ERV1 551 642 -80 1366 94 70 9 chrX 24763091 24763304 -137836626 + pTR5 LTR ERV1 172 397 -2041 195 287 23 58 chrX 24766304 24766391 -137833539 - L2 LINE L2 -2 3270 3187 1004 142 0 0 chrX 24766959 24767107 -137832823 - L1PA8A LINE L1 -18 6113 5966 2080 246 22 30 chrX 24768582 24769213 -137830717 - MLT1E2 LTR MaLR 0 626 1 332 324 108 39 chrX 24769761 24770067 -137829863 + MLT1I LTR MaLR 34 360 -49 26 0 0 0 chrX 24770132 24770158 -137829772 + AT_rich Low_complexity Low_complexity 1 26 0 932 196 0 0 chrX 24770405 24770563 -137829367 - FRAM SINE Alu -7 159 2 2480 91 0 0 chrX 24775598 24775905 -137824025 + AluY SINE Alu 1 307 -4 183 293 0 0 chrX 24776052 24776110 -137823820 - L2 LINE L2 -1 3271 3214 1673 169 30 10 chrX 24776341 24776636 -137823294 - AluJb SINE Alu -5 307 7 1343 225 85 13 chrX 24776974 24777290 -137822640 - MSTD LTR MaLR 0 396 58 1829 252 44 54 chrX 24778803 24779433 -137820497 - MLT1E2 LTR MaLR 0 626 3 332 296 107 12 chrX 24779925 24780101 -137819829 + MLT1I LTR MaLR 1 200 -209 347 283 92 13 chrX 24780141 24780293 -137819637 + MLT1J2 LTR MaLR 270 433 -17 374 313 18 24 chrX 24780566 24780814 -137819116 - L1MC4a LINE L1 -376 5786 5665 2142 104 34 0 chrX 24782248 24782545 -137817385 + AluSx SINE Alu 1 307 -5 1374 182 103 30 chrX 24786763 24787093 -137812837 - MLT1A1 LTR MaLR -11 354 1 239 311 44 59 chrX 24788136 24788271 -137811659 - MIR3 SINE MIR -66 142 10 1624 254 53 54 chrX 24789131 24789631 -137810299 - MLT1E2 LTR MaLR 0 626 126 3772 69 6 48 chrX 24789631 24790169 -137809761 + L1PA13 LINE L1 5649 6163 0 1624 254 53 54 chrX 24790169 24790293 -137809637 - MLT1E2 LTR MaLR -500 126 3 2347 103 7 0 chrX 24790635 24790945 -137808985 + AluSx SINE Alu 1 312 0 251 152 65 0 chrX 24791236 24791282 -137808648 + MER61E LTR ERV1 518 566 -3 250 331 103 7 chrX 24791282 24791407 -137808523 + MLT1J2 LTR MaLR 279 416 -34 23 0 0 0 chrX 24791617 24791640 -137808290 + AT_rich Low_complexity Low_complexity 1 23 0 508 318 46 38 chrX 24791706 24792206 -137807724 - L1MC4a LINE L1 -1902 5906 5403 244 150 25 0 chrX 24792221 24792261 -137807669 + Charlie3 DNA MER1_type 2355 2395 -315 351 222 101 0 chrX 24794440 24794539 -137805391 - L1MC3 LINE L1 0 8203 8095 * 801 196 27 11 chrX 24794536 24794594 -137805336 - L1MC3 LINE L1 -669 7534 7478 2334 90 0 0 chrX 24794594 24794882 -137805048 + AluSc SINE Alu 3 290 -19 801 196 27 11 chrX 24794882 24795007 -137804923 - L1MC3 LINE L1 -725 7478 7348 * 4711 210 108 6 chrX 24795004 24796260 -137803670 - L1MC3 LINE L1 -1083 7120 5738 1315 241 62 42 chrX 24796274 24796727 -137803203 - MLT1C LTR MaLR 0 467 6 8443 242 63 20 chrX 24796732 24799644 -137800286 - L1MC3 LINE L1 -835 5729 2690 2348 66 0 17 chrX 24799809 24800136 -137799794 - AluY SINE Alu 0 322 1 1677 139 35 19 chrX 24800954 24801270 -137798660 - L1MC2 LINE L1 -1 6343 6023 2998 246 106 32 chrX 24801273 24801433 -137798497 - L1MC3 LINE L1 -4005 2740 2593 2024 134 0 0 chrX 24801433 24801710 -137798220 - AluJb SINE Alu -35 277 1 2998 246 106 32 chrX 24801710 24803491 -137796439 - L1MC3 LINE L1 -4152 2593 571 1466 271 44 56 chrX 24803597 24804165 -137795765 - L1MC3 LINE L1 -5482 563 3 643 264 15 0 chrX 24804187 24804384 -137795546 - L1MD3 LINE L1 -8 7987 7788 455 322 101 33 chrX 24804449 24805158 -137794772 + L1 LINE L1 3663 4433 -1713 1611 166 42 89 chrX 24805290 24805693 -137794237 + MLT1B LTR MaLR 2 385 -5 391 339 81 21 chrX 24809245 24809481 -137790449 - MIR SINE MIR 0 262 13 4778 83 52 0 chrX 24809946 24810598 -137789332 - LTR12 LTR ERV1 -2 686 1 403 311 65 53 chrX 24811354 24811866 -137788064 - L1MC4a LINE L1 -358 5804 5389 555 220 20 7 chrX 24812861 24813011 -137786919 - L1MC4a LINE L1 -1487 6321 6170 2630 132 16 27 chrX 24814321 24814760 -137785170 + Tigger2a DNA MER2_type 1 434 0 2886 188 11 40 chrX 24814880 24815534 -137784396 - L1MA8 LINE L1 -849 5297 4663 5644 144 20 5 chrX 24815537 24816503 -137783427 + L1MA8 LINE L1 5308 6287 -4 252 0 0 0 chrX 24817523 24817551 -137782379 + (A)n Simple_repeat Simple_repeat 1 28 0 1344 93 44 0 chrX 24818736 24818961 -137780969 + L1MA7 LINE L1 6057 6291 0 2216 110 0 13 chrX 24818963 24819264 -137780666 + AluSx SINE Alu 1 297 -15 213 39 0 0 chrX 24819294 24819320 -137780610 + (CA)n Simple_repeat Simple_repeat 2 27 0 243 356 31 25 chrX 24819692 24819852 -137780078 - MLT1L LTR MaLR -454 161 1 363 231 87 104 chrX 24820382 24820555 -137779375 + LTR33A LTR ERVL 4 173 -350 791 267 71 8 chrX 24820620 24820860 -137779070 + LTR33A LTR ERVL 269 523 0 251 345 184 18 chrX 24820911 24821253 -137778677 + L2 LINE L2 1852 2250 -1064 1773 209 36 28 chrX 24821493 24821974 -137777956 + MLT1F1 LTR MaLR 37 556 -11 416 390 62 31 chrX 24821974 24822361 -137777569 + L2 LINE L2 2467 2865 -449 264 368 45 15 chrX 24822436 24822569 -137777361 + L2 LINE L2 2947 3083 -189 387 0 0 0 chrX 24822796 24822839 -137777091 + (TA)n Simple_repeat Simple_repeat 1 43 0 2310 92 0 7 chrX 24823081 24823387 -137776543 - AluSp SINE Alu -8 305 2 1399 194 20 43 chrX 24823482 24823827 -137776103 - L1MA9 LINE L1 -40 6272 5936 1450 179 28 92 chrX 24824398 24824788 -137775142 - MLT1A1 LTR MaLR 0 365 1 29 60 0 0 chrX 24825331 24825381 -137774549 + AT_rich Low_complexity Low_complexity 1 50 0 633 278 19 42 chrX 24825699 24825962 -137773968 - MIR SINE MIR -4 258 2 4264 156 101 37 chrX 24825963 24826141 -137773789 - L1MD1 LINE L1 0 6242 6077 2130 79 0 0 chrX 24826141 24826406 -137773524 + AluSg SINE Alu 36 300 -10 4264 156 101 37 chrX 24826406 24827250 -137772680 - L1MD1 LINE L1 -165 6077 5133 1025 70 0 0 chrX 24827287 24827415 -137772515 - AluY SINE Alu -12 299 172 1421 60 0 0 chrX 24827579 24827745 -137772185 - AluY SINE Alu -137 174 9 265 239 128 37 chrX 24827745 24827933 -137771997 - L1MDa LINE L1 -4328 2212 2008 703 129 0 17 chrX 24827934 24828050 -137771880 - AluSg/x SINE Alu -8 304 191 2167 107 3 17 chrX 24828276 24828575 -137771355 + AluSq SINE Alu 1 295 -18 2124 108 14 0 chrX 24828700 24828986 -137770944 + AluSg SINE Alu 1 290 -20 32 0 0 0 chrX 24828990 24829022 -137770908 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chrX 24829065 24829091 -137770839 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1837 213 40 51 chrX 24829554 24830160 -137769770 - L1MDa LINE L1 -4532 2008 1410 365 310 92 115 chrX 24830262 24830749 -137769181 - L1MDa LINE L1 -5586 954 479 1298 274 41 33 chrX 24830860 24831345 -137768585 - L1MDa LINE L1 -6017 523 35 401 251 140 39 chrX 24831484 24831860 -137768070 - L1ME LINE L1 -299 5822 5414 2228 89 7 3 chrX 24832160 24832453 -137767477 - AluSx SINE Alu -18 294 1 189 175 0 0 chrX 24832798 24832838 -137767092 + CT-rich Low_complexity Low_complexity 2 41 0 21 36 0 0 chrX 24833779 24833807 -137766123 + AT_rich Low_complexity Low_complexity 1 28 0 1465 191 8 109 chrX 24834012 24834388 -137765542 - MLT1A1 LTR MaLR -25 340 3 252 333 65 0 chrX 24835473 24835581 -137764349 - MIR SINE MIR -128 134 20 807 189 25 61 chrX 24836193 24836389 -137763541 + MER20 DNA MER1_type 31 219 0 708 176 93 78 chrX 24836509 24836550 -137763380 - MER3 DNA MER1_type -1 208 169 2238 95 0 0 chrX 24836550 24836868 -137763062 - AluSp SINE Alu 0 318 1 708 176 93 78 chrX 24836868 24837029 -137762901 - MER3 DNA MER1_type -40 169 2 2207 176 95 6 chrX 24837601 24838073 -137761857 - MER67D LTR ERV1 0 514 1 2843 133 123 34 chrX 24838666 24839228 -137760702 + LTR9 LTR ERV1 1 612 0 24 0 0 0 chrX 24839252 24839276 -137760654 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrX 24840292 24840313 -137759617 + AT_rich Low_complexity Low_complexity 1 21 0 2185 116 0 0 chrX 24840590 24840893 -137759037 + AluSx SINE Alu 1 303 -9 4637 153 21 25 chrX 24841023 24841844 -137758086 - L1PA16 LINE L1 -24 6142 5323 1859 73 61 4 chrX 24841844 24842089 -137757841 - AluY SINE Alu -14 297 39 4637 153 21 25 chrX 24842089 24842153 -137757777 - L1PA16 LINE L1 -843 5323 5260 26 0 0 0 chrX 24842258 24842284 -137757646 + AT_rich Low_complexity Low_complexity 1 26 0 1173 224 0 0 chrX 24842568 24842791 -137757139 + MER58A DNA MER1_type 1 223 -1 285 103 26 39 chrX 24843510 24843588 -137756342 + T-rich Low_complexity Low_complexity 2 78 0 23 33 0 0 chrX 24843905 24843935 -137755995 + AT_rich Low_complexity Low_complexity 1 30 0 208 258 16 0 chrX 24844582 24844644 -137755286 + CT-rich Low_complexity Low_complexity 2 64 0 1312 173 23 11 chrX 24845427 24845693 -137754237 - L1 LINE L1 -1956 4190 3922 461 194 19 0 chrX 24845698 24845806 -137754124 + L1MA9 LINE L1 6203 6312 0 423 0 0 0 chrX 24846345 24846392 -137753538 + (TG)n Simple_repeat Simple_repeat 2 48 0 2269 109 0 0 chrX 24846419 24846722 -137753208 + AluSx SINE Alu 1 303 -9 255 288 0 14 chrX 24847009 24847089 -137752841 - MIR SINE MIR -67 141 71 967 212 4 56 chrX 24848185 24848416 -137751514 - MER20 DNA MER1_type 0 219 1 26 30 0 0 chrX 24848499 24848532 -137751398 + AT_rich Low_complexity Low_complexity 1 33 0 1419 154 158 0 chrX 24849357 24849668 -137750262 - MER46B DNA MER2_type 0 236 2 1590 130 8 82 chrX 24849711 24849999 -137749931 - L1MB2 LINE L1 -2 6169 5910 1785 157 82 3 chrX 24849999 24850318 -137749612 - MER2 DNA MER2_type 0 344 1 1590 130 8 82 chrX 24850318 24850382 -137749548 - L1MB2 LINE L1 -261 5910 5843 23 0 0 0 chrX 24850586 24850609 -137749321 + AT_rich Low_complexity Low_complexity 1 23 0 2197 64 0 0 chrX 24850725 24850991 -137748939 - AluY SINE Alu -7 304 39 4917 173 34 26 chrX 24851054 24852046 -137747884 + L1MA7 LINE L1 4528 5532 -759 2356 93 0 0 chrX 24852046 24852348 -137747582 - AluSc SINE Alu -7 302 1 4917 173 34 26 chrX 24852348 24853105 -137746825 + L1MA7 LINE L1 5532 6281 -10 31 58 0 0 chrX 24853120 24853172 -137746758 + AT_rich Low_complexity Low_complexity 1 52 0 299 212 53 68 chrX 24853463 24853652 -137746278 - L1ME LINE L1 -654 5512 5334 262 115 39 0 chrX 24853891 24853943 -137745987 + (TA)n Simple_repeat Simple_repeat 1 54 0 528 126 0 0 chrX 24854531 24854618 -137745312 + (TG)n Simple_repeat Simple_repeat 2 88 0 345 347 59 12 chrX 24855008 24855178 -137744752 + MER5B DNA MER1_type 1 178 0 334 237 51 103 chrX 24855365 24855521 -137744409 - MER5A DNA MER1_type -6 183 36 1608 182 27 2 chrX 24855826 24856239 -137743691 + L1M2 LINE L1 5025 5444 -743 2449 37 0 20 chrX 24856815 24857140 -137742790 - AluY SINE Alu 0 311 1 251 262 129 36 chrX 24857336 24857561 -137742369 - L1MC5 LINE L1 -436 7525 7280 462 239 18 9 chrX 24858565 24858674 -137741256 + MER5B DNA MER1_type 69 178 0 474 326 27 36 chrX 24858906 24859130 -137740800 + L2 LINE L2 3092 3313 0 963 262 17 8 chrX 24859186 24859423 -137740507 - MSTB1 LTR MaLR -1 431 193 510 166 31 161 chrX 24859509 24859702 -137740228 - MSTB2 LTR MaLR -1 456 289 280 325 40 40 chrX 24860806 24860932 -137738998 - MIR3 SINE MIR -73 135 10 22 70 0 0 chrX 24861589 24861632 -137738298 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chrX 24861835 24861866 -137738064 + AT_rich Low_complexity Low_complexity 1 31 0 1923 129 11 0 chrX 24862412 24862698 -137737232 - AluSx SINE Alu -10 302 14 1018 70 0 14 chrX 24862855 24862998 -137736932 + AluY SINE Alu 171 311 0 225 321 152 51 chrX 24863506 24863743 -137736187 + L2 LINE L2 2827 3087 -185 389 367 38 0 chrX 24864294 24864452 -137735478 - MIR3 SINE MIR -15 193 30 614 193 143 6 chrX 24864733 24864894 -137735036 + MER3 DNA MER1_type 5 187 -22 533 227 134 26 chrX 24865164 24865329 -137734601 - MER5A DNA MER1_type 0 189 4 207 194 0 0 chrX 24865568 24865604 -137734326 + (TATG)n Simple_repeat Simple_repeat 3 38 0 24 32 0 0 chrX 24865874 24865905 -137734025 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chrX 24867033 24867061 -137732869 + AT_rich Low_complexity Low_complexity 1 28 0 1093 267 36 22 chrX 24867157 24867639 -137732291 + MLT1H LTR MaLR 29 549 0 1006 280 109 37 chrX 24868029 24868486 -137731444 - LTR16C LTR ERVL -1 490 1 218 310 99 42 chrX 24869713 24869855 -137730075 + L2 LINE L2 3153 3302 -11 193 350 85 28 chrX 24870321 24870498 -137729432 + MIR3 SINE MIR 9 195 -13 26 30 0 0 chrX 24870834 24870867 -137729063 + AT_rich Low_complexity Low_complexity 1 33 0 912 267 202 20 chrX 24871915 24872516 -137727414 + L2 LINE L2 2603 3313 0 384 339 0 70 chrX 24872768 24872954 -137726976 + MIR SINE MIR 34 206 -56 3273 190 25 20 chrX 24872991 24873697 -137726233 + MER67C LTR ERV1 1 710 0 341 294 40 57 chrX 24873719 24873896 -137726034 + L1MCa LINE L1 19 694 -6247 3086 214 59 44 chrX 24874069 24875030 -137724900 + L1ME1 LINE L1 5174 6145 -21 24 53 0 0 chrX 24875031 24875069 -137724861 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chrX 24876102 24876135 -137723795 + AT_rich Low_complexity Low_complexity 1 33 0 409 342 6 37 chrX 24876606 24876767 -137723163 - L2 LINE L2 -5 3308 3153 342 333 63 39 chrX 24878906 24879113 -137720817 - L2 LINE L2 -1 3312 3101 971 287 101 17 chrX 24879287 24879642 -137720288 + LTR16C LTR ERVL 107 491 0 507 336 118 46 chrX 24879645 24880153 -137719777 - L2 LINE L2 -228 3085 2553 1258 326 92 73 chrX 24880173 24880646 -137719284 - L2 LINE L2 -1104 2210 1747 694 294 95 33 chrX 24880646 24881067 -137718863 + MLT1J2 LTR MaLR 3 449 -1 1258 326 92 73 chrX 24881067 24881367 -137718563 - L2 LINE L2 -1567 1747 1454 6708 21 0 0 chrX 24881367 24882142 -137717788 + L1PA2 LINE L1 5376 6150 -5 1258 326 92 73 chrX 24882142 24882754 -137717176 - L2 LINE L2 -1860 1454 799 1404 221 13 48 chrX 24883950 24884325 -137715605 - MLT1A1 LTR MaLR 0 365 4 24 32 0 0 chrX 24884874 24884905 -137715025 + AT_rich Low_complexity Low_complexity 1 31 0 2179 259 69 14 chrX 24885146 24885815 -137714115 - L1ME3 LINE L1 0 6162 5457 22 0 0 0 chrX 24885930 24885952 -137713978 + AT_rich Low_complexity Low_complexity 1 22 0 258 264 104 72 chrX 24889794 24889919 -137710011 + L2 LINE L2 3178 3306 -7 640 285 21 43 chrX 24890102 24890216 -137709714 + MIR SINE MIR 19 127 -135 2035 100 14 0 chrX 24890216 24890506 -137709424 - AluY SINE Alu -17 294 1 640 285 21 43 chrX 24890506 24890626 -137709304 + MIR SINE MIR 127 248 -14 312 280 47 9 chrX 24892162 24892269 -137707661 - MIR SINE MIR -30 232 122 747 201 18 0 chrX 24892273 24892437 -137707493 + MER53 DNA DNA 23 189 0 483 298 11 28 chrX 24893261 24893439 -137706491 - MER5A DNA MER1_type -13 176 2 181 319 14 28 chrX 24893595 24893667 -137706263 + MER5A DNA MER1_type 4 74 -115 26 50 0 0 chrX 24893894 24893934 -137705996 + AT_rich Low_complexity Low_complexity 1 40 0 2554 196 46 61 chrX 24894518 24894936 -137704994 - MLT1E3 LTR MaLR -2 622 245 1662 102 0 15 chrX 24894936 24895200 -137704730 - L1MA2 LINE L1 -6 6298 6039 2554 196 46 61 chrX 24895200 24895442 -137704488 - MLT1E3 LTR MaLR -379 245 1 326 80 20 0 chrX 24896210 24896260 -137703670 + (TG)n Simple_repeat Simple_repeat 1 51 0 885 199 68 0 chrX 24896408 24896599 -137703331 + MER3 DNA MER1_type 6 209 0 801 222 61 17 chrX 24896763 24896943 -137702987 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chrX 24897610 24897633 -137702297 + AT_rich Low_complexity Low_complexity 1 23 0 378 281 26 17 chrX 24897652 24897803 -137702127 + MIR SINE MIR 2 154 -62 43 20 0 0 chrX 24897821 24897871 -137702059 + AT_rich Low_complexity Low_complexity 1 50 0 1293 203 88 88 chrX 24898238 24898820 -137701110 - L1MC4 LINE L1 -1 8041 7460 276 222 0 14 chrX 24899205 24899277 -137700653 + (TA)n Simple_repeat Simple_repeat 2 72 0 291 54 0 0 chrX 24899736 24899773 -137700157 + (TC)n Simple_repeat Simple_repeat 2 38 0 250 311 7 82 chrX 24899783 24899918 -137700012 + MLT1J2 LTR MaLR 198 322 -128 352 200 78 38 chrX 24900001 24900149 -137699781 + HsTC2 DNA Tc2 35 1895 -3 249 214 0 0 chrX 24901299 24901355 -137698575 + L1MC4 LINE L1 6648 6703 -1339 351 312 0 51 chrX 24901361 24901518 -137698412 + (TATATG)n Simple_repeat Simple_repeat 5 153 0 423 330 72 5 chrX 24901810 24902004 -137697926 + MIR SINE MIR 2 208 -54 2996 53 0 0 chrX 24902348 24902726 -137697204 - L1PA8 LINE L1 -1 6171 5794 751 133 0 0 chrX 24903269 24903382 -137696548 - FLAM_C SINE Alu -18 125 13 225 368 153 38 chrX 24903881 24904880 -137695050 + L2 LINE L2 99 1212 -2102 369 276 97 38 chrX 24905292 24905686 -137694244 - L1MEd LINE L1 -4784 1612 1178 1392 210 135 42 chrX 24906059 24906517 -137693413 + MLT1D LTR MaLR 5 505 0 267 39 0 115 chrX 24906658 24906710 -137693220 + MADE1 DNA Mariner 1 46 -34 3642 115 15 20 chrX 24906762 24907360 -137692570 - L1MA8 LINE L1 -2 6289 5695 317 298 61 29 chrX 24907360 24907605 -137692325 - L1MEd LINE L1 -5236 969 717 225 250 19 0 chrX 24907672 24907724 -137692206 - L1MEd LINE L1 -6051 154 102 2145 104 0 13 chrX 24908135 24908434 -137691496 + AluSg SINE Alu 1 295 -15 3429 98 11 25 chrX 24908925 24909670 -137690260 + MER4A-int LTR ERV1 4188 6598 0 615 141 0 10 chrX 24909671 24909770 -137690160 + MER4A LTR ERV1 1 98 -566 1520 149 16 24 chrX 24909770 24910086 -137689844 + MER4A LTR ERV1 261 632 -32 2263 88 3 32 chrX 24910379 24910687 -137689243 + AluSp SINE Alu 1 299 -14 285 214 171 0 chrX 24911464 24911534 -137688396 - MIR SINE MIR -84 178 97 209 425 34 14 chrX 24911721 24911928 -137688002 + L2 LINE L2 2850 3060 -212 1346 255 60 78 chrX 24912106 24912824 -137687106 + L1ME3A LINE L1 5454 6158 -12 1402 200 45 99 chrX 24912891 24913375 -137686555 - LTR40b LTR ERVL -3 459 2 2115 68 0 53 chrX 24913567 24913786 -137686144 - L1PA8 LINE L1 -3 6169 5971 6125 132 21 32 chrX 24913786 24914869 -137685061 + MER11C LTR ERVK 1 1071 0 2115 68 0 53 chrX 24914869 24914971 -137684959 - L1PA8 LINE L1 -201 5971 5865 1800 122 6 97 chrX 24915183 24915503 -137684427 + AluSx SINE Alu 5 295 -17 2135 141 0 0 chrX 24916152 24916457 -137683473 + AluSx SINE Alu 1 305 -7 214 307 55 55 chrX 24916753 24916880 -137683050 - L2 LINE L2 -214 3099 2973 239 390 65 30 chrX 24916928 24917128 -137682802 - L2 LINE L2 -463 2851 2645 5301 26 3 2 chrX 24917284 24917938 -137681992 - L1PA4 LINE L1 0 6155 5533 1533 47 0 0 chrX 24917938 24918130 -137681800 + L1P LINE L1 4951 5142 -1004 4594 128 157 26 chrX 24918855 24919853 -137680077 - MER11B LTR ERVK -4 1232 1 657 250 49 64 chrX 24920143 24920407 -137679523 - MLT1H LTR MaLR -216 333 74 449 204 0 9 chrX 24920705 24920813 -137679117 + CT-rich Low_complexity Low_complexity 3 109 0 187 340 21 32 chrX 24921463 24921557 -137678373 - MIR SINE MIR -116 146 54 214 327 27 60 chrX 24921751 24921901 -137678029 - MIR SINE MIR -110 152 8 207 288 16 88 chrX 24922565 24922690 -137677240 + MIR SINE MIR 91 207 -1 23 33 0 0 chrX 24923617 24923647 -137676283 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 24923993 24924015 -137675915 + AT_rich Low_complexity Low_complexity 1 22 0 331 279 106 0 chrX 24924104 24924208 -137675722 - MIR3 SINE MIR 0 208 94 180 333 107 0 chrX 24924440 24924515 -137675415 - L2 LINE L2 -4 3268 3186 815 284 13 4 chrX 24927815 24928040 -137671890 - LTR16B LTR ERVL 0 464 238 312 27 0 0 chrX 24928805 24928842 -137671088 + (CA)n Simple_repeat Simple_repeat 2 38 0 1178 273 22 20 chrX 24929022 24929429 -137670501 + MLT1I LTR MaLR 2 409 0 321 26 0 0 chrX 24929561 24929599 -137670331 + (CA)n Simple_repeat Simple_repeat 1 38 0 1642 221 60 2 chrX 24929622 24930038 -137669892 + L1MD3 LINE L1 7542 7981 -14 279 0 0 0 chrX 24930130 24930161 -137669769 + (TG)n Simple_repeat Simple_repeat 2 32 0 1789 256 102 26 chrX 24930267 24930883 -137669047 - MLT2F LTR ERVL 0 663 1 2030 138 0 0 chrX 24931394 24931676 -137668254 + AluSx SINE Alu 1 282 -30 21 36 0 0 chrX 24931756 24931784 -137668146 + AT_rich Low_complexity Low_complexity 1 28 0 225 178 0 0 chrX 24934758 24934803 -137665127 + CT-rich Low_complexity Low_complexity 1 45 0 359 261 79 66 chrX 24935612 24935825 -137664105 - LTR16A1 LTR ERVL -113 378 145 3053 147 23 0 chrX 24936251 24936496 -137663434 - Tigger1 DNA MER2_type -950 1468 1230 2299 76 7 13 chrX 24936496 24936799 -137663131 - AluSp SINE Alu -12 301 1 3053 147 23 0 chrX 24936799 24937069 -137662861 - Tigger1 DNA MER2_type -1188 1230 941 747 278 63 73 chrX 24937156 24937555 -137662375 + MLT1I LTR MaLR 15 409 0 2045 135 27 0 chrX 24938080 24938377 -137661553 + AluSx SINE Alu 1 305 -7 1548 170 61 0 chrX 24939597 24939874 -137660056 + AluJo SINE Alu 5 298 -14 257 298 0 0 chrX 24939881 24939938 -137659992 + L2 LINE L2 3208 3264 -8 22 0 0 0 chrX 24939945 24939967 -137659963 + AT_rich Low_complexity Low_complexity 1 22 0 2456 87 0 0 chrX 24940065 24940376 -137659554 + AluY SINE Alu 1 311 0 3070 123 7 2 chrX 24941627 24942083 -137657847 - LTR22A LTR ERVK 0 458 1 207 250 29 77 chrX 24942249 24942353 -137657577 - MIR3 SINE MIR -7 201 103 24 32 0 0 chrX 24943551 24943582 -137656348 + AT_rich Low_complexity Low_complexity 1 31 0 216 159 32 16 chrX 24943828 24943891 -137656039 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chrX 24944219 24944240 -137655690 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 24944386 24944409 -137655521 + AT_rich Low_complexity Low_complexity 1 23 0 286 270 86 66 chrX 24944925 24945077 -137654853 + MIR SINE MIR 100 254 -8 371 314 93 51 chrX 24945592 24945698 -137654232 - L1M4 LINE L1 -1725 4421 4321 884 274 9 5 chrX 24945698 24945921 -137654009 + MER58A DNA MER1_type 1 224 0 371 314 93 51 chrX 24945921 24946340 -137653590 - L1M4 LINE L1 -1825 4321 3874 2355 63 3 0 chrX 24946992 24947306 -137652624 - AluSp SINE Alu 0 315 1 531 256 111 25 chrX 24947372 24947571 -137652359 - MLT1L LTR MaLR -51 564 349 232 156 78 109 chrX 24947632 24947696 -137652234 - MLT1L LTR MaLR -553 62 1 26 64 0 0 chrX 24947929 24947976 -137651954 + AT_rich Low_complexity Low_complexity 1 47 0 2320 110 3 0 chrX 24948411 24948721 -137651209 - AluSp SINE Alu -2 311 1 26 50 0 0 chrX 24948806 24948846 -137651084 + AT_rich Low_complexity Low_complexity 1 40 0 490 185 0 0 chrX 24948846 24948927 -137651003 + MER58B DNA MER1_type 261 341 0 194 0 39 0 chrX 24948973 24948999 -137650931 + (TTATA)n Simple_repeat Simple_repeat 5 31 0 303 86 66 66 chrX 24949009 24949160 -137650770 + (TATAA)n Simple_repeat Simple_repeat 2 152 0 293 306 31 10 chrX 24949597 24949695 -137650235 - LTR67 LTR ERVL -359 198 99 185 309 36 48 chrX 24950550 24950634 -137649296 - MIR3 SINE MIR -5 203 121 315 0 0 0 chrX 24951776 24951811 -137648119 + (CA)n Simple_repeat Simple_repeat 2 36 0 284 392 88 10 chrX 24951981 24952175 -137647755 - MIR SINE MIR -32 230 22 182 411 14 20 chrX 24952319 24952465 -137647465 - MIR3 SINE MIR -36 172 28 299 280 93 0 chrX 24952704 24952811 -137647119 + MIR SINE MIR 146 262 0 1702 216 136 70 chrX 24953031 24953350 -137646580 + MLT1E1 LTR MaLR 1 298 -356 1518 81 25 51 chrX 24953350 24953586 -137646344 + MER30 DNA MER1_type 1 230 0 1702 216 136 70 chrX 24953586 24953878 -137646052 + MLT1E1 LTR MaLR 298 652 -2 1522 244 111 19 chrX 24955195 24955524 -137644406 - MER90 LTR ERV1 -6 569 173 2911 110 2 70 chrX 24955524 24956035 -137643895 - L1PA15 LINE L1 -13 6152 5677 1522 244 111 19 chrX 24956035 24956226 -137643704 - MER90 LTR ERV1 -402 173 1 572 346 9 14 chrX 24956255 24956466 -137643464 + MLT1K LTR MaLR 83 292 -296 497 307 48 30 chrX 24956891 24957122 -137642808 + MLT1K LTR MaLR 332 566 -22 1547 211 52 55 chrX 24957180 24957582 -137642348 - MER92A LTR ERV1 -11 401 1 28 48 0 0 chrX 24958282 24958324 -137641606 + AT_rich Low_complexity Low_complexity 1 42 0 2052 138 0 0 chrX 24958435 24958732 -137641198 - AluSg SINE Alu -13 297 1 446 139 0 0 chrX 24959166 24959252 -137640678 - L1PB1 LINE L1 -1 6150 6065 1786 146 61 30 chrX 24960937 24961300 -137638630 - THE1C LTR MaLR 0 375 2 9927 123 9 38 chrX 24961301 24962924 -137637006 - THE1C-int LTR MaLR 0 1580 4 1899 137 58 28 chrX 24962927 24963291 -137636639 - THE1C LTR MaLR 0 375 1 267 300 23 23 chrX 24963377 24963477 -137636453 + GA-rich Low_complexity Low_complexity 3 173 0 231 299 19 19 chrX 24963842 24963949 -137635981 + HAL1b LINE L1 221 327 -1021 15878 140 37 5 chrX 24964436 24967080 -137632850 + Tigger4(Zombi) DNA MER2_type 1 2731 0 3025 218 71 115 chrX 24967295 24968658 -137631272 + MER109 Unknown Unknown 1 1228 -1204 821 86 36 21 chrX 24968658 24968798 -137631132 + L1MA5 LINE L1 6157 6298 -2 3025 218 71 115 chrX 24968798 24969234 -137630696 + MER109 Unknown Unknown 1228 1682 -750 13870 102 4 15 chrX 25019235 25020751 -137579179 + L1P LINE L1 709 2195 -3951 2485 52 0 13 chrX 25020751 25021060 -137578870 + AluY SINE Alu 1 305 -6 13870 102 4 15 chrX 25021060 25021757 -137578173 + L1P LINE L1 2195 2898 -3248 317 283 64 29 chrX 25022157 25022330 -137577600 - LTR16A LTR ERVL -195 255 77 207 293 13 53 chrX 25022605 25022680 -137577250 + MIR3 SINE MIR 90 161 -47 2117 115 6 0 chrX 25022929 25023242 -137576688 + L1MC1 LINE L1 5999 6313 -20 520 146 0 62 chrX 25023948 25024140 -137575790 + (AGGGGG)n Simple_repeat Simple_repeat 1 180 0 * 645 157 0 0 chrX 25024093 25024227 -137575703 + G-rich Low_complexity Low_complexity 1 134 0 37604 42 29 2 chrX 25024273 25029240 -137570690 + L1P LINE L1 111 5211 -935 7226 36 19 0 chrX 25029350 25030671 -137569259 + L1PA5 LINE L1 4817 6154 0 25149 98 7 11 chrX 25030671 25034835 -137565095 - L1P3 LINE L1 -1529 4932 763 485 314 56 20 chrX 25034839 25035196 -137564734 - L1MC/D LINE L1 -1988 5820 5451 292 252 14 35 chrX 25035199 25035342 -137564588 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 2852 198 13 63 chrX 25035364 25036041 -137563889 - MER82 DNA MER2_type -10 643 1 1592 31 5 0 chrX 25036156 25036350 -137563580 - L1PA4 LINE L1 -3 6152 5958 534 210 7 110 chrX 25036371 25036512 -137563418 + L1M3 LINE L1 5100 5197 -949 270 0 0 0 chrX 25036512 25036542 -137563388 + (TG)n Simple_repeat Simple_repeat 2 31 0 534 210 7 110 chrX 25036542 25036690 -137563240 + L1M3 LINE L1 5197 5359 -787 278 304 13 0 chrX 25036753 25036832 -137563098 + MER82 DNA MER2_type 48 127 -526 7704 132 35 11 chrX 25036832 25038227 -137561703 - Ricksha DNA DNA -39 3207 1821 1661 153 3 3 chrX 25038225 25038507 -137561423 - Ricksha DNA DNA -966 288 7 * 1455 164 0 22 chrX 25038513 25038787 -137561143 + L1M3 LINE L1 5349 5616 -567 586 266 94 47 chrX 25038787 25039126 -137560804 - LTR16C LTR ERVL -23 468 114 229 261 91 11 chrX 25039755 25039843 -137560087 + MIR3 SINE MIR 105 199 -9 252 149 68 0 chrX 25040216 25040290 -137559640 + (TA)n Simple_repeat Simple_repeat 1 79 0 757 191 105 34 chrX 25041411 25041620 -137558310 - MER58A DNA MER1_type 0 224 1 261 289 106 10 chrX 25041822 25041926 -137558004 + MIR SINE MIR 99 212 -50 6193 101 31 8 chrX 25042181 25043428 -137556502 - L1PA15 LINE L1 -2 6163 4905 1610 62 0 5 chrX 25044047 25044241 -137555689 - AluY SINE Alu -118 193 1 2383 89 0 3 chrX 25044577 25044879 -137555051 - AluSq SINE Alu -12 301 1 833 174 12 12 chrX 25045801 25045962 -137553968 + MER58B DNA MER1_type 181 341 0 327 49 0 0 chrX 25046085 25046126 -137553804 + (TG)n Simple_repeat Simple_repeat 1 41 0 193 25 0 100 chrX 25046308 25046348 -137553582 + (CATA)n Simple_repeat Simple_repeat 3 38 0 3063 238 38 56 chrX 25046978 25048228 -137551702 - L1MC4 LINE L1 0 8042 6815 318 301 124 18 chrX 25048601 25048714 -137551216 + MIR SINE MIR 21 145 -63 25 51 0 0 chrX 25048847 25048886 -137551044 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chrX 25048966 25048990 -137550940 + AT_rich Low_complexity Low_complexity 1 24 0 2120 168 0 15 chrX 25049251 25049557 -137550373 + MER89 LTR ERV1 4 401 -158 2800 101 28 14 chrX 25049557 25049983 -137549947 - MSTB1 LTR MaLR 0 432 1 2120 168 0 15 chrX 25049983 25050140 -137549790 + MER89 LTR ERV1 401 559 0 320 314 93 0 chrX 25051764 25051904 -137548026 - MIR SINE MIR -6 256 104 450 88 0 0 chrX 25052236 25052304 -137547626 + (CA)n Simple_repeat Simple_repeat 2 69 0 413 366 45 24 chrX 25052963 25053209 -137546721 + MIR SINE MIR 3 253 -9 1814 111 49 85 chrX 25054064 25054453 -137545477 + THE1C LTR MaLR 1 375 0 285 155 0 0 chrX 25054639 25054697 -137545233 - L1MA4A LINE L1 -11 6292 6235 23 0 0 0 chrX 25055644 25055667 -137544263 + AT_rich Low_complexity Low_complexity 1 23 0 798 259 10 0 chrX 25056396 25056589 -137543341 + L2 LINE L2 2137 2331 -983 333 315 36 12 chrX 25057547 25057712 -137542218 - MER69A DNA AcHobo -8 169 1 2181 107 7 16 chrX 25057915 25058224 -137541706 - AluSq SINE Alu -7 306 1 2479 175 13 0 chrX 25058261 25058735 -137541195 - L1MA8 LINE L1 -221 6070 5591 1850 73 44 0 chrX 25058768 25059043 -137540887 - L1MA5 LINE L1 -2 6298 6012 2252 72 7 0 chrX 25059043 25059321 -137540609 + AluSp SINE Alu 18 297 -16 5019 112 45 2 chrX 25059329 25060132 -137539798 + L1PA14 LINE L1 5325 6161 0 420 254 15 62 chrX 25060841 25060971 -137538959 + L2 LINE L2 3190 3313 0 1484 143 0 9 chrX 25061223 25061454 -137538476 - AluJb SINE Alu -11 301 73 429 171 0 0 chrX 25061492 25061562 -137538368 - AluJb SINE Alu -242 70 1 31 58 0 0 chrX 25061711 25061763 -137538167 + AT_rich Low_complexity Low_complexity 1 52 0 231 310 20 42 chrX 25062104 25062221 -137537709 - MIR SINE MIR -67 141 22 21 0 0 0 chrX 25062571 25062592 -137537338 + AT_rich Low_complexity Low_complexity 1 21 0 1125 77 26 0 chrX 25063196 25063351 -137536579 + L1MA3 LINE L1 6146 6304 -1 1563 201 115 21 chrX 25063923 25064401 -137535529 - Charlie1b DNA MER1_type 0 523 1 520 298 148 45 chrX 25064693 25065112 -137534818 + L1M4 LINE L1 2113 2574 -3572 365 119 0 45 chrX 25065188 25065255 -137534675 - L1PA16 LINE L1 -16 6150 6087 8940 101 19 3 chrX 25065257 25066490 -137533440 - HSMAR1 DNA Mariner -32 1255 4 3859 140 10 2 chrX 25066499 25067113 -137532817 - L1PB4 LINE L1 -102 6054 5436 515 289 83 40 chrX 25067118 25067818 -137532112 + L1M4 LINE L1 2666 3395 -2751 235 300 57 51 chrX 25068014 25068364 -137531566 + L1M4 LINE L1 3689 4040 -2106 253 251 110 21 chrX 25068667 25068858 -137531072 + L1M4 LINE L1 4498 4705 -1441 2263 143 34 31 chrX 25068896 25069314 -137530616 + MSTB1 LTR MaLR 1 419 -13 334 313 140 44 chrX 25069446 25069947 -137529983 - L1 LINE L1 -2422 3724 3176 1883 178 14 17 chrX 25070463 25070812 -137529118 - MER7A DNA MER2_type 0 346 1 1957 212 24 21 chrX 25071069 25071535 -137528395 - MLT1C LTR MaLR 0 467 1 2488 63 7 0 chrX 25071809 25072111 -137527819 + AluSp SINE Alu 1 304 -9 1965 162 31 11 chrX 25072719 25073071 -137526859 + MLT1A1 LTR MaLR 1 359 -6 26 52 0 17 chrX 25073491 25073534 -137526396 + AT_rich Low_complexity Low_complexity 1 44 -13 2078 69 3 100 chrX 25073534 25073854 -137526076 - AluSq SINE Alu -24 289 1 26 52 0 17 chrX 25073854 25073868 -137526062 + AT_rich Low_complexity Low_complexity 44 57 0 2331 71 0 43 chrX 25073899 25074224 -137525706 - AluY SINE Alu 0 311 1 25 0 0 0 chrX 25075175 25075200 -137524730 + AT_rich Low_complexity Low_complexity 1 25 0 2486 68 0 0 chrX 25075304 25075615 -137524315 - AluY SINE Alu 0 311 1 599 234 8 0 chrX 25076018 25076142 -137523788 - L2 LINE L2 -3 3310 3186 35 24 0 0 chrX 25076179 25076221 -137523709 + AT_rich Low_complexity Low_complexity 1 42 0 584 343 53 4 chrX 25076320 25076565 -137523365 - MIR SINE MIR 0 262 6 * 1685 312 219 20 chrX 25076564 25077266 -137522664 - L2 LINE L2 -271 3042 2481 335 246 67 73 chrX 25077266 25077445 -137522485 + MER5B DNA MER1_type 1 178 0 1685 312 219 20 chrX 25077445 25078444 -137521486 - L2 LINE L2 -832 2481 994 22 80 0 0 chrX 25078962 25079012 -137520918 + AT_rich Low_complexity Low_complexity 1 50 0 270 318 135 41 chrX 25079530 25079700 -137520230 - MIR SINE MIR -70 192 7 427 136 48 87 chrX 25079701 25079804 -137520126 + MER92B LTR ERV1 1 99 -537 2271 79 41 0 chrX 25079817 25080108 -137519822 - AluSg SINE Alu -7 303 1 1998 121 73 16 chrX 25080108 25080423 -137519507 - MER1B DNA MER1_type -6 333 1 1628 221 9 52 chrX 25080425 25080846 -137519084 + MER92B LTR ERV1 92 494 -142 932 112 0 0 chrX 25080846 25080858 -137519072 - L1MA8 LINE L1 -339 5952 5941 793 223 159 0 chrX 25080858 25081078 -137518852 - L1MA9 LINE L1 -226 5940 5686 666 205 8 16 chrX 25081081 25081330 -137518600 + L1MA9 LINE L1 5948 6290 -22 907 58 22 0 chrX 25081367 25081505 -137518425 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 500 207 124 8 chrX 25081510 25081631 -137518299 + MER92B LTR ERV1 498 632 -4 2280 146 26 81 chrX 25082702 25083209 -137516721 - L1MB2 LINE L1 0 6171 5693 264 301 57 67 chrX 25083214 25083231 -137516699 + MER20 DNA MER1_type 7 23 -196 2529 70 21 49 chrX 25083231 25083617 -137516313 + THE1C LTR MaLR 1 375 0 264 301 57 67 chrX 25083617 25083808 -137516122 + MER20 DNA MER1_type 23 213 -6 568 248 80 118 chrX 25084012 25084307 -137515623 + MER34 LTR ERV1 1 306 -236 2122 136 128 10 chrX 25084307 25084690 -137515240 + MSTA LTR MaLR 1 428 0 568 248 80 118 chrX 25084690 25084848 -137515082 + MER34 LTR ERV1 306 432 -110 2285 98 3 0 chrX 25084848 25085145 -137514785 + AluSq SINE Alu 1 298 -15 568 248 80 118 chrX 25085145 25085250 -137514680 + MER34 LTR ERV1 432 539 -3 303 250 65 28 chrX 25085615 25085723 -137514207 - L1ME3A LINE L1 -214 5956 5845 1272 165 132 51 chrX 25085917 25086095 -137513835 + LTR37A LTR ERV1 1 163 -263 396 0 0 0 chrX 25086095 25086139 -137513791 + (CA)n Simple_repeat Simple_repeat 2 45 0 1272 165 132 51 chrX 25086139 25086354 -137513576 + LTR37A LTR ERV1 163 426 0 216 97 0 0 chrX 25086814 25086845 -137513085 + (CA)n Simple_repeat Simple_repeat 2 32 0 47 73 0 0 chrX 25087433 25087529 -137512401 + AT_rich Low_complexity Low_complexity 1 96 0 2259 113 0 3 chrX 25087581 25087892 -137512038 - AluSq SINE Alu -3 310 1 37 62 0 0 chrX 25087937 25088002 -137511928 + AT_rich Low_complexity Low_complexity 1 65 0 13809 44 2 5 chrX 25088263 25090751 -137509179 - L1PA5 LINE L1 -3 6151 3666 309 250 150 0 chrX 25091750 25091850 -137508080 + MER92B LTR ERV1 1 115 -521 354 179 0 0 chrX 25092000 25092067 -137507863 + MER92C LTR ERV1 487 553 -1 746 182 10 134 chrX 25092469 25092760 -137507170 + MER31-int LTR ERV1 1039 1293 -3643 1286 233 33 100 chrX 25093109 25093598 -137506332 + MER31-int LTR ERV1 3778 4233 -703 502 209 16 39 chrX 25093615 25093744 -137506186 + LTR37A LTR ERV1 1 126 -300 257 150 0 0 chrX 25093802 25093842 -137506088 + MER31-int LTR ERV1 4330 4369 -567 390 237 10 0 chrX 25093881 25093978 -137505952 + MER31-int LTR ERV1 4372 4469 -467 260 260 0 39 chrX 25094045 25094122 -137505808 + MER31-int LTR ERV1 4482 4555 -381 310 231 0 0 chrX 25094579 25094644 -137505286 + MER92B LTR ERV1 1 65 -571 360 167 30 0 chrX 25094864 25094930 -137505000 + MER92C LTR ERV1 487 554 0 1278 181 30 77 chrX 25095637 25096078 -137503852 - LTR37A LTR ERV1 0 426 7 6680 115 14 21 chrX 25096485 25097298 -137502632 + Tigger1 DNA MER2_type 1 807 -1611 2311 91 13 0 chrX 25097298 25097607 -137502323 + AluSp SINE Alu 1 313 0 6680 115 14 21 chrX 25097607 25097827 -137502103 + Tigger1 DNA MER2_type 807 1027 -1391 1570 136 0 4 chrX 25097827 25098062 -137501868 - AluSg/x SINE Alu -1 309 76 2540 159 52 11 chrX 25098062 25098348 -137501582 + Tigger1 DNA MER2_type 1919 2236 -182 1679 184 0 24 chrX 25098348 25098676 -137501254 - AluJb SINE Alu 0 321 1 2540 159 52 11 chrX 25098676 25098864 -137501066 + Tigger1 DNA MER2_type 2236 2415 -3 242 279 112 6 chrX 25098867 25099028 -137500902 - L1MEd LINE L1 -2380 3749 3572 243 0 0 0 chrX 25099031 25099058 -137500872 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 9906 30 0 0 chrX 25099064 25101009 -137498921 - L1PA3 LINE L1 -3 6152 4206 12321 31 0 1 chrX 25101009 25102508 -137497422 + L1P LINE L1 2515 4012 -2134 394 312 26 64 chrX 25102539 25102773 -137497157 - L1MEd LINE L1 -2580 3549 3325 4885 158 43 14 chrX 25102779 25103749 -137496181 - L1MB2 LINE L1 0 6171 5172 373 191 247 12 chrX 25103883 25104045 -137495885 - L1MEd LINE L1 -2920 3209 3010 333 262 159 24 chrX 25104214 25104466 -137495464 - L1MEd LINE L1 -4908 1211 926 22 0 0 0 chrX 25104479 25104501 -137495429 + AT_rich Low_complexity Low_complexity 1 22 0 237 33 0 0 chrX 25104546 25104576 -137495354 + (TTG)n Simple_repeat Simple_repeat 2 31 0 420 364 20 54 chrX 25104620 25104917 -137495013 - L1MEd LINE L1 -5730 389 103 867 125 7 0 chrX 25105040 25105184 -137494746 + L1MA4A LINE L1 6147 6291 -12 222 357 71 0 chrX 25105437 25105563 -137494367 + L3 LINE CR1 940 1074 -503 569 330 115 3 chrX 25105596 25105944 -137493986 + L3 LINE CR1 1190 1576 -1 2822 150 17 9 chrX 25106429 25106890 -137493040 + MLT1C LTR MaLR 3 467 0 24 0 0 0 chrX 25107368 25107392 -137492538 + AT_rich Low_complexity Low_complexity 1 24 0 357 286 173 1 chrX 25107706 25107905 -137492025 + MIR SINE MIR 34 262 0 2536 172 36 12 chrX 25108069 25108562 -137491368 + MLT1D LTR MaLR 1 505 0 1208 248 94 64 chrX 25108591 25109123 -137490807 - MLT1H LTR MaLR -1 548 1 29 0 0 0 chrX 25110040 25110069 -137489861 + AT_rich Low_complexity Low_complexity 1 29 0 297 206 48 0 chrX 25110071 25110134 -137489796 - L1MD2 LINE L1 -235 6124 6059 * 1218 205 4 0 chrX 25110131 25110380 -137489550 + L1ME1 LINE L1 5680 5929 -237 189 390 134 23 chrX 25110380 25110724 -137489206 + L2 LINE L2 2595 2976 -338 207 69 0 0 chrX 25111295 25111324 -137488606 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 329 242 50 43 chrX 25112047 25112208 -137487722 - MER103 DNA DNA -2 164 3 331 143 18 0 chrX 25112594 25112650 -137487280 - THE1C LTR MaLR 0 375 319 462 148 289 0 chrX 25113388 25113521 -137486409 - MER5A DNA MER1_type -10 179 4 255 365 24 16 chrX 25115465 25115591 -137484339 - L3 LINE CR1 -951 626 500 454 383 24 8 chrX 25115857 25116105 -137483825 - L3 LINE CR1 -1109 468 217 472 340 115 32 chrX 25116740 25117140 -137482790 - L2 LINE L2 0 3313 2881 231 218 0 0 chrX 25117196 25117251 -137482679 - L1MB2 LINE L1 -1 6170 6116 394 331 71 39 chrX 25117279 25117587 -137482343 + L1M2 LINE L1 4 321 -6528 * 2406 160 60 8 chrX 25117583 25118292 -137481638 + L1PA14 LINE L1 4806 5542 -624 6908 181 18 14 chrX 25118316 25120189 -137479741 + L1PA12 LINE L1 1926 3818 -3766 4020 109 6 19 chrX 25120190 25120553 -137479377 + L1PA14 LINE L1 5542 5895 -266 1858 167 0 3 chrX 25120553 25120852 -137479078 + AluJb SINE Alu 1 298 -14 4020 109 6 19 chrX 25120852 25121114 -137478816 + L1PA14 LINE L1 5895 6159 -2 3263 125 101 12 chrX 25121114 25121687 -137478243 + L1PB4 LINE L1 5530 6154 -2 407 200 0 0 chrX 25121712 25121782 -137478148 - FAM SINE Alu -27 158 89 2600 161 33 4 chrX 25121785 25122244 -137477686 - L1MB2 LINE L1 -77 6094 5623 * 43308 44 4 1 chrX 25122242 25128373 -137471557 + L1PA4 LINE L1 1 6155 0 2245 181 55 4 chrX 25128387 25129098 -137470832 - L1MB2 LINE L1 -544 5639 4887 22 35 0 0 chrX 25129106 25129135 -137470795 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 25131065 25131088 -137468842 + AT_rich Low_complexity Low_complexity 1 23 0 398 313 88 9 chrX 25131366 25131703 -137468227 - L1ME4a LINE L1 -216 5905 5523 2221 114 0 16 chrX 25132048 25132363 -137467567 - AluSg SINE Alu 0 310 1 241 293 13 27 chrX 25133844 25133919 -137466011 - 7SK RNA RNA -119 74 1 239 299 75 37 chrX 25133979 25134086 -137465844 - MIR SINE MIR -72 136 26 1131 182 19 0 chrX 25134316 25134530 -137465400 - MER20 DNA MER1_type 0 219 2 496 241 146 50 chrX 25135010 25135271 -137464659 - L2 LINE L2 -1153 2161 1876 207 0 0 0 chrX 25135279 25135302 -137464628 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2018 110 22 0 chrX 25135302 25135574 -137464356 - AluSx SINE Alu -34 278 1 300 339 82 6 chrX 25135879 25136062 -137463868 + L3b LINE CR1 1145 1341 -242 255 61 0 0 chrX 25136934 25136967 -137462963 + (CATCT)n Simple_repeat Simple_repeat 3 35 0 1246 171 49 4 chrX 25136974 25137238 -137462692 + MER33 DNA MER1_type 1 276 -48 572 311 36 15 chrX 25137546 25137742 -137462188 - MIR SINE MIR -12 250 51 392 267 30 107 chrX 25139497 25139873 -137460057 + MLT1H LTR MaLR 28 377 -32 287 87 0 0 chrX 25141049 25141095 -137458835 + L1MA3 LINE L1 6260 6305 0 3813 168 27 3 chrX 25141520 25142223 -137457707 + L1MA9 LINE L1 5255 5974 -338 736 184 0 0 chrX 25142219 25142360 -137457570 - L1 LINE L1 -1154 4992 4852 * 1909 161 18 0 chrX 25142366 25142696 -137457234 + L1PB4 LINE L1 5807 6142 -14 1892 143 23 17 chrX 25142713 25142865 -137457065 + L1MA9 LINE L1 5961 6111 -201 1646 169 83 18 chrX 25142865 25143191 -137456739 - MER7A DNA MER2_type -1 345 1 1892 143 23 17 chrX 25143191 25143387 -137456543 + L1MA9 LINE L1 6111 6311 -1 226 268 10 10 chrX 25143482 25143579 -137456351 + CT-rich Low_complexity Low_complexity 4 100 0 281 317 28 14 chrX 25144096 25144241 -137455689 + HAL1 LINE L1 1112 1258 -1249 360 176 40 0 chrX 25144362 25144436 -137455494 + MLT1H LTR MaLR 429 505 0 351 311 96 47 chrX 25145199 25145562 -137454368 + L1MC/D LINE L1 4909 5289 -857 1170 264 57 10 chrX 25145570 25145953 -137453977 + L1MC/D LINE L1 5319 5719 -2089 1756 178 11 0 chrX 25145970 25146251 -137453679 + AluJo SINE Alu 5 288 -24 2073 138 0 19 chrX 25146411 25146722 -137453208 + AluSx SINE Alu 1 305 -7 1037 127 16 19 chrX 25146734 25146947 -137452983 + L1 LINE L1 5101 5310 -854 452 226 110 14 chrX 25146951 25147097 -137452833 + L1MC/D LINE L1 5560 5719 -2089 5508 86 56 4 chrX 25147125 25147953 -137451977 + L1MA2 LINE L1 5433 6303 -1 2363 97 0 7 chrX 25147971 25148279 -137451651 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 25148485 25148507 -137451423 + AT_rich Low_complexity Low_complexity 1 22 0 1491 189 108 44 chrX 25148782 25149125 -137450805 - MLT1A1 LTR MaLR 0 365 1 226 224 0 20 chrX 25151005 25151054 -137448876 + MER5A DNA MER1_type 4 51 -138 1663 181 46 38 chrX 25151054 25151238 -137448692 + MLT1B LTR MaLR 1 182 -208 351 0 0 0 chrX 25151238 25151277 -137448653 + (TC)n Simple_repeat Simple_repeat 2 40 0 1663 181 46 38 chrX 25151277 25151463 -137448467 + MLT1B LTR MaLR 182 374 -16 548 239 51 0 chrX 25151469 25151607 -137448323 + MER5A DNA MER1_type 45 189 0 201 232 89 18 chrX 25152796 25152852 -137447078 + L2 LINE L2 3206 3265 -7 1559 171 25 4 chrX 25154299 25154579 -137445351 - MLT1C LTR MaLR -50 417 132 362 305 150 0 chrX 25154885 25155052 -137444878 - L1ME LINE L1 -3459 2621 2430 341 314 50 0 chrX 25155508 25155648 -137444282 - L1ME LINE L1 -5887 183 37 1497 164 47 3 chrX 25156351 25156650 -137443280 - L1MA7 LINE L1 -7 6284 5973 420 20 0 0 chrX 25157116 25157165 -137442765 + (TG)n Simple_repeat Simple_repeat 2 50 0 630 178 14 62 chrX 25157666 25157812 -137442118 + L1ME LINE L1 3996 4134 -2012 * 3583 210 65 17 chrX 25157810 25158934 -137440996 + L1ME LINE L1 4421 5599 -567 1016 199 76 0 chrX 25158938 25159229 -137440701 + L1MB8 LINE L1 3029 3341 -2805 614 98 20 0 chrX 25159231 25159333 -137440597 + L1PB2 LINE L1 6046 6149 -2 2299 219 23 9 chrX 25159341 25159913 -137440017 + L1MB8 LINE L1 5593 6172 -6 3278 155 19 70 chrX 25161004 25161732 -137438198 + LTR8 LTR ERV1 1 691 0 183 234 0 43 chrX 25161896 25161943 -137437987 - L2 LINE L2 0 3313 3269 491 360 54 19 chrX 25161947 25162205 -137437725 - L2 LINE L2 -196 3117 2851 1388 205 79 55 chrX 25162281 25162700 -137437230 + MER92B LTR ERV1 15 443 -193 226 232 50 50 chrX 25162702 25162801 -137437129 + LTR48B LTR ERV1 4 102 -542 * 1138 223 61 72 chrX 25162772 25163180 -137436750 + MER39 LTR ERV1 175 706 -1 705 260 15 35 chrX 25163180 25163361 -137436569 + MER92B LTR ERV1 453 629 -7 289 83 0 0 chrX 25163346 25163382 -137436548 - U2 snRNA snRNA -152 36 1 * 404 338 21 0 chrX 25163412 25163554 -137436376 - L2 LINE L2 -331 2982 2838 4929 105 46 15 chrX 25163646 25164401 -137435529 + MER4E LTR ERV1 1 779 0 1923 171 118 0 chrX 25164401 25164782 -137435148 + MSTC LTR MaLR 3 428 0 284 119 153 0 chrX 25165136 25165195 -137434735 - MER92C LTR ERV1 0 554 487 506 213 37 29 chrX 25165280 25165416 -137434514 - MER92B LTR ERV1 -499 137 1 3342 174 34 17 chrX 25165728 25166378 -137433552 + MER67B LTR ERV1 1 661 0 3011 171 71 3 chrX 25166935 25167524 -137432406 - LTR48B LTR ERV1 -2 642 14 576 96 0 67 chrX 25167530 25167594 -137432336 + MER4A LTR ERV1 1 57 -607 5259 99 31 11 chrX 25167594 25168358 -137431572 - LTR17 LTR ERV1 0 780 1 576 96 0 67 chrX 25168358 25168397 -137431533 + MER4A LTR ERV1 57 97 -567 * 1917 111 159 79 chrX 25168394 25168772 -137431158 + MER4A LTR ERV1 257 664 0 4702 160 76 74 chrX 25168884 25169387 -137430543 - LTR17-int LTR ERV1 -164 6167 5667 2271 86 0 38 chrX 25169387 25169701 -137430229 + AluSg SINE Alu 2 303 -7 4702 160 76 74 chrX 25169701 25170350 -137429580 - LTR17-int LTR ERV1 -664 5667 5012 472 243 26 47 chrX 25170357 25170575 -137429355 - LTR48B-int LTR ERV1 -2709 3622 1981 8067 149 22 16 chrX 25170642 25173095 -137426835 - L1MA4A LINE L1 -5 7002 4565 9388 188 112 10 chrX 25173174 25173380 -137426550 - L1MA4A LINE L1 -4724 2125 1941 2254 106 0 0 chrX 25173380 25173681 -137426249 - AluSx SINE Alu -11 301 1 9388 188 112 10 chrX 25173681 25175401 -137424529 - L1MA4A LINE L1 -4908 1941 2 584 211 43 29 chrX 25175460 25175668 -137424262 - LTR48B-int LTR ERV1 -3170 1953 1743 525 196 0 0 chrX 25175880 25175977 -137423953 - LTR48B-int LTR ERV1 -2878 3453 3357 1620 137 57 25 chrX 25176170 25176524 -137423406 - LTR48B-int LTR ERV1 -156 1630 1347 1234 244 40 20 chrX 25176516 25176819 -137423111 - LTR48B-int LTR ERV1 -4231 2100 1792 * 518 199 19 106 chrX 25176817 25177035 -137422895 - LTR48B-int LTR ERV1 -4554 1728 288 * 374 206 0 22 chrX 25177532 25177624 -137422306 - LTR48B-int LTR ERV1 -4954 1377 1288 249 211 173 0 chrX 25177697 25177749 -137422181 - tRNA-Glu-GAG tRNA tRNA 0 75 15 1164 160 4 59 chrX 25178103 25178341 -137421589 - LTR48B-int LTR ERV1 -6081 250 26 4285 138 40 14 chrX 25178341 25179045 -137420885 + MER50 LTR ERV1 1 722 -12 3499 153 42 2 chrX 25179113 25179732 -137420198 - LTR48B LTR ERV1 0 644 1 3834 130 5 44 chrX 25179835 25180496 -137419434 - MER41B LTR ERV1 0 635 1 691 251 163 20 chrX 25180510 25180865 -137419065 + HAL1b LINE L1 19 424 -924 1005 226 99 14 chrX 25181098 25181452 -137418478 + HAL1b LINE L1 719 1102 -246 22 35 0 0 chrX 25182128 25182157 -137417773 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrX 25182539 25182574 -137417356 + AT_rich Low_complexity Low_complexity 1 35 0 192 263 175 0 chrX 25182772 25182829 -137417101 - MIR SINE MIR -118 144 78 2161 85 0 14 chrX 25182912 25183195 -137416735 + AluSq SINE Alu 1 279 -34 315 0 0 0 chrX 25183195 25183230 -137416700 + (CA)n Simple_repeat Simple_repeat 2 36 0 30 77 0 0 chrX 25183277 25183342 -137416588 + AT_rich Low_complexity Low_complexity 1 65 0 296 257 87 87 chrX 25183466 25183672 -137416258 + MLT1H LTR MaLR 97 302 -247 1553 138 42 69 chrX 25183790 25184004 -137415926 + L1MA8 LINE L1 5957 6160 -131 2049 113 20 23 chrX 25184004 25184306 -137415624 + AluSq SINE Alu 1 301 -12 1553 138 42 69 chrX 25184306 25184425 -137415505 + L1MA8 LINE L1 6160 6281 -10 2354 115 46 48 chrX 25184429 25184564 -137415366 + MER75 DNA T2_type 1 135 -379 1673 113 46 0 chrX 25184564 25184836 -137415094 - AluSx SINE Alu 0 318 36 2354 115 46 48 chrX 25184836 25185091 -137414839 + MER75 DNA T2_type 135 391 -123 2122 137 22 0 chrX 25185091 25185404 -137414526 + MER1B DNA MER1_type 20 339 0 446 228 248 21 chrX 25185687 25185832 -137414098 + MER5A DNA MER1_type 9 186 -3 996 233 9 9 chrX 25185845 25186068 -137413862 + MER58A DNA MER1_type 2 224 0 302 212 59 12 chrX 25186140 25186225 -137413705 + MIR SINE MIR 75 163 -99 378 0 0 0 chrX 25186226 25186268 -137413662 + (TG)n Simple_repeat Simple_repeat 2 43 0 1468 151 105 12 chrX 25187143 25187401 -137412529 - AluJo SINE Alu -30 282 1 1097 190 5 5 chrX 25187538 25187722 -137412208 - MER5A DNA MER1_type -5 184 1 427 268 146 0 chrX 25189247 25189411 -137410519 + MIR SINE MIR 45 232 -30 2216 108 18 54 chrX 25189418 25189807 -137410123 - THE1C LTR MaLR 0 375 1 426 85 0 0 chrX 25189826 25189885 -137410045 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 292 304 62 18 chrX 25190923 25191035 -137408895 + L2 LINE L2 3186 3302 -11 517 152 33 0 chrX 25191162 25191254 -137408676 - L1MC4 LINE L1 -3 8039 7945 240 162 0 0 chrX 25191280 25191317 -137408613 - THE1A LTR MaLR -3 352 316 1100 83 0 0 chrX 25191336 25191480 -137408450 - THE1A LTR MaLR -206 149 6 1375 201 98 24 chrX 25191485 25191904 -137408026 - L1MC4 LINE L1 -140 7902 7453 1504 215 29 23 chrX 25191906 25192255 -137407675 + MLT1A1 LTR MaLR 15 365 0 326 241 0 65 chrX 25192263 25192342 -137407588 - L1MC4 LINE L1 -605 7437 7365 2166 179 29 69 chrX 25192342 25192411 -137407519 - MLT1D LTR MaLR 0 505 435 1726 114 20 108 chrX 25192411 25192752 -137407178 + AluYb8 SINE Alu 1 311 -7 2166 179 29 69 chrX 25192752 25193206 -137406724 - MLT1D LTR MaLR -70 435 3 326 241 0 65 chrX 25193206 25193234 -137406696 - L1MC4 LINE L1 -677 7365 7337 2415 61 7 7 chrX 25193269 25193563 -137406367 + AluSq SINE Alu 1 294 -19 206 341 57 8 chrX 25194231 25194354 -137405576 - MIR3 SINE MIR -6 202 74 573 274 48 6 chrX 25195004 25195172 -137404758 + MIR SINE MIR 40 214 -48 1608 195 19 30 chrX 25195442 25195811 -137404119 + MLT1A1 LTR MaLR 1 365 0 326 320 117 22 chrX 25196349 25196580 -137403350 - MIR SINE MIR -9 253 1 382 233 25 114 chrX 25196972 25197061 -137402869 - HAL1 LINE L1 0 2507 2412 1995 105 30 0 chrX 25197061 25197328 -137402602 - AluSx SINE Alu -37 275 1 382 233 25 114 chrX 25197328 25197483 -137402447 - HAL1 LINE L1 -95 2412 2285 506 300 31 0 chrX 25197529 25197659 -137402271 - L2 LINE L2 0 3313 3180 613 327 118 35 chrX 25197772 25198228 -137401702 - HAL1 LINE L1 -395 2112 1619 22 35 0 0 chrX 25198301 25198330 -137401600 + AT_rich Low_complexity Low_complexity 1 29 0 1012 240 14 0 chrX 25198535 25198743 -137401187 - MER58A DNA MER1_type -1 223 13 356 304 40 76 chrX 25199062 25199365 -137400565 - HAL1 LINE L1 -2214 293 2 37 39 0 0 chrX 25199761 25199812 -137400118 + AT_rich Low_complexity Low_complexity 1 51 0 2509 60 0 0 chrX 25199837 25200136 -137399794 + AluY SINE Alu 1 299 -12 24 32 0 0 chrX 25200153 25200184 -137399746 + AT_rich Low_complexity Low_complexity 1 31 0 2883 100 200 45 chrX 25200616 25201165 -137398765 + MER51A LTR ERV1 1 634 0 275 284 0 15 chrX 25201315 25201382 -137398548 + L2 LINE L2 3238 3303 -10 2356 71 0 0 chrX 25201521 25201855 -137398075 - AluSg SINE Alu 0 334 1 2346 98 3 16 chrX 25203415 25203732 -137396198 - AluSp SINE Alu 0 313 1 1955 134 0 29 chrX 25203997 25204311 -137395619 - AluSx SINE Alu -7 305 1 225 140 140 0 chrX 25205400 25205450 -137394480 + L1ME1 LINE L1 3644 3700 -2446 1705 153 25 53 chrX 25205450 25205770 -137394160 + AluJb SINE Alu 1 311 -1 1758 247 26 31 chrX 25205779 25206362 -137393568 + L1ME1 LINE L1 3673 4252 -1894 1741 162 19 44 chrX 25206365 25206680 -137393250 - AluJo SINE Alu -3 309 3 234 0 0 0 chrX 25206783 25206809 -137393121 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 301 223 0 43 chrX 25206815 25206909 -137393021 - L1M LINE L1 -941 5403 5314 * 662 130 106 0 chrX 25206899 25207022 -137392908 - L1MC3 LINE L1 -1 7784 7649 1670 219 27 58 chrX 25207034 25207492 -137392438 + L1ME1 LINE L1 5637 6108 -58 1611 144 24 48 chrX 25207492 25207867 -137392063 + L1MA7 LINE L1 5925 6290 -1 1670 219 27 58 chrX 25207867 25207892 -137392038 + L1ME1 LINE L1 6108 6132 -34 2388 74 0 0 chrX 25207892 25208188 -137391742 - AluSg1 SINE Alu -13 296 1 1670 219 27 58 chrX 25208188 25208250 -137391680 + L1ME1 LINE L1 6132 6166 0 209 380 36 22 chrX 25208307 25208444 -137391486 - L2 LINE L2 -181 3091 2953 255 217 0 0 chrX 25208656 25208702 -137391228 - MLT1K LTR MaLR -5 583 538 35 0 0 0 chrX 25208726 25208761 -137391169 + AT_rich Low_complexity Low_complexity 1 35 0 489 304 134 0 chrX 25209037 25209231 -137390699 - MLT1K LTR MaLR -235 353 134 2071 104 7 20 chrX 25209282 25209580 -137390350 - AluSx SINE Alu -18 294 1 21 95 0 0 chrX 25209654 25209717 -137390213 + AT_rich Low_complexity Low_complexity 1 63 0 232 361 113 45 chrX 25210302 25210880 -137389050 + L2 LINE L2 2082 2700 -609 3137 51 44 0 chrX 25210880 25211289 -137388641 + L1PA8 LINE L1 5743 6169 -3 833 259 148 33 chrX 25211758 25212226 -137387704 - MLT1G1 LTR MaLR 0 595 14 890 251 94 15 chrX 25212732 25213190 -137386740 + L1ME3A LINE L1 2115 2573 -3642 531 263 31 66 chrX 25213295 25213523 -137386407 + LTR16A LTR ERVL 115 334 -116 512 155 78 0 chrX 25213549 25213652 -137386278 - L1MA9 LINE L1 -22 6290 6180 1372 143 23 26 chrX 25213655 25213920 -137386010 - L1MA9 LINE L1 -232 6080 5817 577 299 30 23 chrX 25214011 25214312 -137385618 + L1ME3A LINE L1 2686 2988 -3227 * 2175 248 52 55 chrX 25214289 25215083 -137384847 + L1ME3A LINE L1 5381 6171 -68 627 248 57 34 chrX 25215493 25215556 -137384374 - LTR50 LTR ERVL 0 795 735 2088 104 25 0 chrX 25215556 25215836 -137384094 + AluSq SINE Alu 1 287 -26 627 248 57 34 chrX 25215836 25216034 -137383896 - LTR50 LTR ERVL -60 735 528 519 216 50 106 chrX 25216055 25216254 -137383676 - LTR50 LTR ERVL -607 188 1 1375 254 22 6 chrX 25217311 25217626 -137382304 + LTR40b LTR ERVL 1 320 -142 1292 196 7 29 chrX 25217635 25217911 -137382019 - MLT1D LTR MaLR -2 503 234 518 277 0 0 chrX 25217979 25218091 -137381839 - MLT1D LTR MaLR -411 215 104 * 526 144 124 0 chrX 25218081 25218178 -137381752 + LTR40a LTR ERVL 409 517 -2 300 301 66 49 chrX 25218440 25218623 -137381307 - MER5A DNA MER1_type 0 189 4 1905 136 0 37 chrX 25218736 25219060 -137380870 + AluJo SINE Alu 1 312 0 490 204 76 15 chrX 25220177 25220309 -137379621 + MER91C DNA MER1_type 1 140 0 369 318 27 9 chrX 25221042 25221152 -137378778 + L2 LINE L2 3202 3313 0 279 54 0 0 chrX 25223131 25223168 -137376762 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 180 352 0 0 chrX 25223320 25223374 -137376556 + MIR3 SINE MIR 108 161 -47 205 218 36 0 chrX 25223688 25223743 -137376187 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 * 214 200 0 0 chrX 25223707 25223747 -137376183 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 80 0 0 chrX 25223747 25223772 -137376158 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 200 0 0 chrX 25223779 25223829 -137376101 - L1MC4 LINE L1 -1340 6702 6653 684 239 54 93 chrX 25224273 25224558 -137375372 + MLT1D LTR MaLR 6 276 -258 416 302 17 6 chrX 25224611 25224783 -137375147 - L1ME3A LINE L1 -230 5940 5767 384 77 0 0 chrX 25224831 25224883 -137375047 + (TG)n Simple_repeat Simple_repeat 2 53 0 254 247 52 0 chrX 25224896 25224993 -137374937 - L1M4c LINE L1 -5021 1363 1262 936 217 107 8 chrX 25225037 25225281 -137374649 - MLT1A1 LTR MaLR -97 268 1 9830 183 56 81 chrX 25225282 25227079 -137372851 - L1MCa LINE L1 -2521 3905 2065 2705 70 6 0 chrX 25227079 25227431 -137372499 + L1PA7 LINE L1 5794 6154 0 9830 183 56 81 chrX 25227431 25227458 -137372472 - L1MCa LINE L1 -4361 2065 2039 2180 104 3 3 chrX 25227458 25227767 -137372163 + AluSx SINE Alu 1 309 -3 9830 183 56 81 chrX 25227767 25227940 -137371990 - L1MCa LINE L1 -4387 2039 1863 1133 175 63 5 chrX 25227940 25228163 -137371767 - MER46A DNA MER2_type 0 236 1 9830 183 56 81 chrX 25228163 25229393 -137370537 - L1MCa LINE L1 -4563 1863 798 366 61 0 0 chrX 25229393 25229442 -137370488 + (TG)n Simple_repeat Simple_repeat 2 50 0 9830 183 56 81 chrX 25229442 25230198 -137369732 - L1MCa LINE L1 -5628 798 25 208 338 14 0 chrX 25232352 25232423 -137367507 + MIR SINE MIR 117 188 -74 24 0 0 0 chrX 25233427 25233451 -137366479 + AT_rich Low_complexity Low_complexity 1 24 0 933 321 105 34 chrX 25233872 25234526 -137365404 + L2 LINE L2 2590 3313 0 825 276 142 20 chrX 25235963 25236553 -137363377 + L1ME3A LINE L1 5289 5951 -216 26 0 0 0 chrX 25236778 25236804 -137363126 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chrX 25236884 25236933 -137362997 + AT_rich Low_complexity Low_complexity 1 49 0 241 311 163 15 chrX 25236982 25237117 -137362813 - MIR3 SINE MIR -13 195 41 24 32 0 0 chrX 25238801 25238832 -137361098 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 25239059 25239080 -137360850 + AT_rich Low_complexity Low_complexity 1 21 0 194 305 51 34 chrX 25239687 25239805 -137360125 - L2 LINE L2 -3 3310 3191 212 260 0 20 chrX 25241014 25241064 -137358866 - L2 LINE L2 -61 3211 3163 1570 206 65 5 chrX 25241201 25241570 -137358360 - L1MB7 LINE L1 -9 6175 5785 21 57 0 0 chrX 25241640 25241675 -137358255 + AT_rich Low_complexity Low_complexity 1 35 0 248 330 19 9 chrX 25241800 25241906 -137358024 - MIR SINE MIR -5 257 151 464 270 48 0 chrX 25241907 25242033 -137357897 + MIR SINE MIR 30 161 -101 195 303 172 10 chrX 25242092 25242191 -137357739 - MIR SINE MIR -84 178 64 469 187 22 0 chrX 25242916 25243007 -137356923 - L1MC2 LINE L1 -9 6335 6243 2110 89 3 3 chrX 25243267 25243578 -137356352 + AluSp SINE Alu 1 311 0 6537 110 43 6 chrX 25243812 25245032 -137354898 + L1MA2 LINE L1 5039 6304 0 23 54 0 0 chrX 25245287 25245324 -137354606 + AT_rich Low_complexity Low_complexity 1 37 0 306 223 109 80 chrX 25245467 25245642 -137354288 + L1ME3A LINE L1 2396 2575 -3965 1688 312 102 37 chrX 25245681 25248208 -137351722 + L1ME3A LINE L1 2661 5352 -1188 490 325 49 42 chrX 25248518 25249091 -137350839 + L1ME3A LINE L1 5687 6263 -301 1969 207 52 12 chrX 25249314 25249812 -137350118 - L1 LINE L1 -1599 4547 4030 * 3856 184 23 29 chrX 25249805 25250418 -137349512 + L1MB1 LINE L1 5603 6218 -344 2252 71 41 0 chrX 25250418 25250712 -137349218 - AluYa5 SINE Alu -5 306 1 3856 184 23 29 chrX 25250712 25250937 -137348993 + L1MB1 LINE L1 6218 6438 -124 2171 131 0 0 chrX 25250937 25251249 -137348681 - AluSx SINE Alu 0 312 1 3856 184 23 29 chrX 25251249 25251282 -137348648 + L1MB1 LINE L1 6438 6470 -92 1368 83 14 42 chrX 25251278 25251515 -137348415 + L1PA10 LINE L1 5938 6168 0 * 1148 161 13 101 chrX 25251519 25251817 -137348113 + L1MA10 LINE L1 6060 6331 -3 15382 116 26 12 chrX 25251878 25254263 -137345667 + Tigger1 DNA MER2_type 1 2418 0 589 292 94 29 chrX 25254798 25255075 -137344855 + LTR33A LTR ERVL 1 295 -228 1010 165 34 11 chrX 25255335 25255511 -137344419 - L1M3e LINE L1 -6844 186 7 248 325 65 16 chrX 25255656 25255779 -137344151 - MIR SINE MIR -24 238 110 3272 209 41 19 chrX 25256219 25257050 -137342880 + L1MB7 LINE L1 4142 4990 -1156 581 282 104 32 chrX 25257358 25257667 -137342263 + MLT1H LTR MaLR 219 549 0 3863 184 31 11 chrX 25257671 25258765 -137341165 + L1MB7 LINE L1 4930 6046 -138 776 294 84 3 chrX 25259564 25259863 -137340067 - MER20B DNA MER1_type -405 378 56 477 160 52 3 chrX 25259958 25260294 -137339636 + (TA)n Simple_repeat Simple_repeat 1 352 0 324 176 55 0 chrX 25260360 25260525 -137339405 + (TA)n Simple_repeat Simple_repeat 1 174 0 253 188 29 0 chrX 25260591 25260660 -137339270 + (TA)n Simple_repeat Simple_repeat 1 71 0 200 176 0 39 chrX 25260870 25260921 -137339009 + (TA)n Simple_repeat Simple_repeat 2 50 0 405 0 0 0 chrX 25261027 25261072 -137338858 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 26 30 0 0 chrX 25261081 25261114 -137338816 + AT_rich Low_complexity Low_complexity 1 33 0 230 214 154 17 chrX 25261383 25261500 -137338430 - L1ME4a LINE L1 -18 6103 5971 1565 189 145 22 chrX 25261641 25261677 -137338253 - MLT2D LTR ERVL -4 410 380 684 24 0 0 chrX 25261677 25261759 -137338171 + (TG)n Simple_repeat Simple_repeat 2 83 0 1565 189 145 22 chrX 25261759 25262087 -137337843 - MLT2D LTR ERVL -34 380 1 2007 157 21 0 chrX 25262340 25262717 -137337213 + L1 LINE L1 4462 4846 -1300 6050 130 24 3 chrX 25262723 25263829 -137336101 + L1PA16 LINE L1 5032 6166 0 27 0 0 0 chrX 25264531 25264558 -137335372 + AT_rich Low_complexity Low_complexity 1 27 0 2006 187 40 20 chrX 25265185 25265634 -137334296 - L1MC4 LINE L1 -143 7899 7442 463 343 91 0 chrX 25266143 25266341 -137333589 + MIR SINE MIR 18 233 -29 184 246 115 33 chrX 25266369 25266430 -137333500 + MIR SINE MIR 42 107 -155 246 32 0 0 chrX 25266699 25266730 -137333200 + (TG)n Simple_repeat Simple_repeat 2 32 0 262 319 26 26 chrX 25267146 25267262 -137332668 - L3 LINE CR1 -107 1470 1355 23 78 0 0 chrX 25267401 25267452 -137332478 + AT_rich Low_complexity Low_complexity 1 51 0 188 309 10 62 chrX 25267555 25267652 -137332278 - MIR SINE MIR -76 186 95 2391 238 65 39 chrX 25268741 25269006 -137330924 - L1MCa LINE L1 -3913 2483 2227 1007 152 16 0 chrX 25269006 25269190 -137330740 - L1MA6 LINE L1 -18 6282 6096 2391 238 65 39 chrX 25269190 25269587 -137330343 - L1MCa LINE L1 -4169 2227 1842 1526 202 50 3 chrX 25269587 25269884 -137330046 - AluJb SINE Alu -1 311 1 2391 238 65 39 chrX 25269884 25270183 -137329747 - L1MCa LINE L1 -4554 1842 1307 348 148 16 0 chrX 25270184 25270197 -137329733 - MER46A DNA MER2_type -78 158 145 968 118 35 0 chrX 25270197 25270341 -137329589 + Tigger4(Zombi) DNA MER2_type 1 149 -2582 1344 146 28 32 chrX 25270344 25270597 -137329333 + Tigger4(Zombi) DNA MER2_type 2471 2722 -9 922 259 46 29 chrX 25270616 25271026 -137328904 - L1MCa LINE L1 -4923 1473 1057 1820 251 48 0 chrX 25271049 25271528 -137328402 - L1MCa LINE L1 -5410 986 485 1637 169 42 92 chrX 25271535 25271990 -137327940 - MSTB1 LTR MaLR 0 432 1 398 224 12 0 chrX 25272000 25272085 -137327845 - LTR40a LTR ERVL -4 515 430 852 261 59 33 chrX 25272090 25272335 -137327595 - LTR40b LTR ERVL -181 281 27 1927 146 46 46 chrX 25272335 25272725 -137327205 + MLT1B LTR MaLR 1 390 0 852 261 59 33 chrX 25272725 25272751 -137327179 - LTR40b LTR ERVL -435 27 3 1510 274 24 12 chrX 25272754 25273163 -137326767 - L1MCa LINE L1 -5918 478 65 526 161 8 17 chrX 25274395 25274513 -137325417 + GA-rich Low_complexity Low_complexity 4 120 0 471 247 163 18 chrX 25274543 25274709 -137325221 + MER58A DNA MER1_type 35 224 0 2237 108 0 0 chrX 25274784 25275079 -137324851 - AluSx SINE Alu -17 295 1 267 319 91 58 chrX 25275653 25275945 -137323985 + L2 LINE L2 2888 3266 -47 2167 197 13 50 chrX 25275945 25276469 -137323461 - MLT1D LTR MaLR 0 505 1 267 319 91 58 chrX 25276469 25276514 -137323416 + L2 LINE L2 3266 3308 -5 186 103 0 0 chrX 25276516 25276545 -137323385 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chrX 25276621 25276644 -137323286 + (A)n Simple_repeat Simple_repeat 1 23 0 849 270 0 0 chrX 25276797 25276971 -137322959 - MER5A DNA MER1_type 0 189 16 326 350 76 32 chrX 25277015 25277172 -137322758 + MIR SINE MIR 20 183 -79 42440 32 22 1 chrX 25277677 25283675 -137316255 - L1PA2 LINE L1 -2 6153 26 973 243 40 97 chrX 25284151 25284625 -137315305 + LTR16A1 LTR ERVL 3 449 -8 244 333 18 18 chrX 25285083 25285197 -137314733 + L1ME3A LINE L1 5965 6078 -92 243 300 136 7 chrX 25285441 25285581 -137314349 - L1M4 LINE L1 -1981 4165 4008 682 307 38 71 chrX 25285744 25286349 -137313581 - L1MEd LINE L1 -5213 906 322 25 0 0 0 chrX 25286515 25286540 -137313390 + AT_rich Low_complexity Low_complexity 1 25 0 219 286 48 0 chrX 25287143 25287206 -137312724 + MIR SINE MIR 147 212 -50 345 273 50 50 chrX 25287307 25287446 -137312484 + L2 LINE L2 3173 3311 -2 201 343 0 0 chrX 25287627 25287700 -137312230 + MIR3 SINE MIR 125 197 -11 21 0 0 0 chrX 25289334 25289355 -137310575 + AT_rich Low_complexity Low_complexity 1 21 0 1048 131 0 36 chrX 25290317 25290485 -137309445 - AluSg/x SINE Alu -20 292 131 398 257 125 0 chrX 25290526 25290662 -137309268 + Charlie7 DNA MER1_type 5 157 -2455 2133 119 27 0 chrX 25290752 25291047 -137308883 - AluSx SINE Alu -9 303 1 524 371 38 4 chrX 25291052 25291289 -137308641 + LTR33 LTR ERVL 21 265 -256 1862 162 14 0 chrX 25291290 25291586 -137308344 + AluJb SINE Alu 1 300 -12 385 191 0 27 chrX 25291611 25291637 -137308293 + GA-rich Low_complexity Low_complexity 4 29 -81 2325 93 6 3 chrX 25291637 25291948 -137307982 + AluSq SINE Alu 1 312 -1 385 191 0 27 chrX 25291948 25292031 -137307899 + GA-rich Low_complexity Low_complexity 29 110 0 2699 216 30 16 chrX 25292146 25292841 -137307089 + L1M4 LINE L1 3588 4292 -1854 21 0 0 0 chrX 25293130 25293151 -137306779 + AT_rich Low_complexity Low_complexity 1 21 0 263 215 0 46 chrX 25293177 25293242 -137306688 + MLT1J LTR MaLR 3 64 -447 1740 169 23 10 chrX 25293258 25293565 -137306365 - AluJb SINE Alu -1 311 1 364 339 83 16 chrX 25293600 25293792 -137306138 + MLT1J LTR MaLR 240 444 -67 883 274 71 62 chrX 25294677 25295112 -137304818 + MLT1J LTR MaLR 9 447 -64 294 327 100 35 chrX 25295142 25295680 -137304250 - L1MEc LINE L1 -4589 2018 1446 363 275 70 47 chrX 25295764 25296095 -137303835 - L1MEc LINE L1 -5204 1399 887 239 154 15 31 chrX 25296162 25296227 -137303703 + (TA)n Simple_repeat Simple_repeat 2 65 0 626 112 95 9 chrX 25296227 25296343 -137303587 - L1MC2 LINE L1 -10 6334 6209 189 0 0 0 chrX 25296403 25296424 -137303506 + (CA)n Simple_repeat Simple_repeat 1 21 0 3577 152 12 43 chrX 25296591 25296842 -137303088 + L1M1 LINE L1 4543 4800 -1504 414 187 76 40 chrX 25296842 25296990 -137302940 + LTR19C LTR ERV1 39 227 -552 3577 152 12 43 chrX 25296990 25297922 -137302008 + L1M1 LINE L1 4800 5736 -568 1697 220 132 78 chrX 25297922 25298655 -137301275 - LTR19C LTR ERV1 0 779 7 3762 84 10 29 chrX 25298661 25299242 -137300688 + L1MA1 LINE L1 5733 6302 0 245 325 18 0 chrX 25299423 25299537 -137300393 + L1M4 LINE L1 4460 4575 -1571 268 377 57 0 chrX 25299631 25299737 -137300193 - L2 LINE L2 0 3272 3161 2318 93 3 3 chrX 25299792 25300094 -137299836 + AluSc SINE Alu 1 302 -7 343 289 111 54 chrX 25300346 25300661 -137299269 + L1M4 LINE L1 4933 5265 -881 23 33 0 0 chrX 25300773 25300803 -137299127 + AT_rich Low_complexity Low_complexity 1 30 0 192 226 0 0 chrX 25300833 25300895 -137299035 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1656 219 99 38 chrX 25301485 25301961 -137297969 + MLT1D LTR MaLR 1 505 0 35 41 0 0 chrX 25303139 25303188 -137296742 + AT_rich Low_complexity Low_complexity 1 49 0 1470 287 83 21 chrX 25303516 25304073 -137295857 - MLT1E LTR MaLR 0 593 3 1196 174 39 130 chrX 25304300 25304709 -137295221 - MLT1A2 LTR MaLR -2 372 1 512 304 99 20 chrX 25304963 25305164 -137294766 + L2 LINE L2 3096 3312 -1 32 0 0 0 chrX 25305193 25305225 -137294705 + AT_rich Low_complexity Low_complexity 1 32 0 2750 231 83 42 chrX 25305315 25306102 -137293828 + MER21B LTR ERV1 20 838 -25 28 29 0 0 chrX 25306190 25306225 -137293705 + AT_rich Low_complexity Low_complexity 1 35 0 1765 226 128 15 chrX 25307056 25307596 -137292334 - MER77 LTR ERV1 -4 601 1 327 276 29 98 chrX 25308172 25308285 -137291645 - MLT1J LTR MaLR -52 459 371 2222 99 0 34 chrX 25308285 25308607 -137291323 - AluSx SINE Alu -1 311 1 327 276 29 98 chrX 25308607 25308739 -137291191 - MLT1J LTR MaLR -140 371 231 593 268 71 25 chrX 25308950 25309305 -137290625 - L1MC4a LINE L1 -158 5963 5588 431 228 54 0 chrX 25309644 25309736 -137290194 - MER5A DNA MER1_type -84 105 9 1533 194 70 141 chrX 25310152 25310740 -137289190 - MLT1E1 LTR MaLR -108 546 1 3210 148 34 37 chrX 25310853 25311497 -137288433 + L1MA7 LINE L1 5650 6291 0 29 0 0 0 chrX 25311520 25311549 -137288381 + AT_rich Low_complexity Low_complexity 1 29 0 9446 247 50 59 chrX 25311553 25314906 -137285024 + L1PB4 LINE L1 2 3384 -3474 2000 109 39 0 chrX 25314906 25315189 -137284741 + AluSq SINE Alu 3 296 -17 9446 247 50 59 chrX 25315189 25318523 -137281407 + L1PB4 LINE L1 3384 6490 -368 390 57 0 0 chrX 25318523 25318576 -137281354 + (CA)n Simple_repeat Simple_repeat 2 54 0 9446 247 50 59 chrX 25318576 25318942 -137280988 + L1PB4 LINE L1 6490 6858 0 25 31 0 0 chrX 25319319 25319351 -137280579 + AT_rich Low_complexity Low_complexity 1 32 0 240 380 35 31 chrX 25319497 25319723 -137280207 + L3 LINE CR1 1332 1558 -19 207 313 40 81 chrX 25320864 25320963 -137278967 + L2 LINE L2 3143 3237 -35 293 303 25 33 chrX 25321379 25321501 -137278429 - MIR SINE MIR -139 123 3 23 33 0 0 chrX 25322164 25322194 -137277736 + AT_rich Low_complexity Low_complexity 1 30 0 364 190 35 58 chrX 25322529 25322703 -137277227 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 1469 58 0 16 chrX 25324268 25324456 -137275474 + AluY SINE Alu 123 307 -4 336 276 54 20 chrX 25325024 25325227 -137274703 + L1MD3 LINE L1 2268 2477 -3669 658 234 13 57 chrX 25325416 25325643 -137274287 - L1M4 LINE L1 -2140 4006 3790 2451 51 0 0 chrX 25325799 25326093 -137273837 + AluY SINE Alu 1 294 -17 22 56 0 0 chrX 25326153 25326189 -137273741 + AT_rich Low_complexity Low_complexity 1 36 0 547 292 121 8 chrX 25326722 25327102 -137272828 + L1MD3 LINE L1 3579 4001 -2145 1436 115 0 10 chrX 25327162 25327371 -137272559 - AluSg/x SINE Alu -6 304 98 708 301 65 24 chrX 25327385 25327844 -137272086 + L1MD3 LINE L1 4067 4544 -1602 1403 116 39 0 chrX 25327897 25328129 -137271801 + L1MA4 LINE L1 6056 6296 -4 600 234 83 99 chrX 25328138 25328714 -137271216 + L1MC4 LINE L1 7459 8025 -17 359 65 0 0 chrX 25328770 25328816 -137271114 - L1MA3 LINE L1 -474 5831 5786 435 302 128 21 chrX 25328887 25329455 -137270475 + L1MD3 LINE L1 5273 5862 -300 202 169 0 34 chrX 25329462 25329521 -137270409 + (TA)n Simple_repeat Simple_repeat 1 57 0 369 289 34 73 chrX 25330533 25330737 -137269193 - MLT1H LTR MaLR -147 402 207 184 259 139 65 chrX 25331106 25331214 -137268716 + L2 LINE L2 3180 3295 -18 910 206 0 11 chrX 25331476 25331651 -137268279 + MER5B DNA MER1_type 1 173 -5 279 0 0 0 chrX 25333256 25333287 -137266643 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 5352 36 2 0 chrX 25333287 25333927 -137266003 - L1PA5 LINE L1 -15 6139 5499 207 167 0 0 chrX 25334074 25334116 -137265814 + (TA)n Simple_repeat Simple_repeat 2 43 0 305 235 35 87 chrX 25334217 25334332 -137265598 - MIR SINE MIR -35 227 119 181 406 0 0 chrX 25334417 25334481 -137265449 - MIR SINE MIR -196 66 3 28 61 0 0 chrX 25335781 25335830 -137264100 + AT_rich Low_complexity Low_complexity 1 49 0 5006 142 22 39 chrX 25336270 25337095 -137262835 - L1PB4 LINE L1 -7 6149 5333 1830 162 0 13 chrX 25337095 25337409 -137262521 - AluJo SINE Alu 0 312 3 5006 142 22 39 chrX 25337409 25337591 -137262339 - L1PB4 LINE L1 -823 5333 5149 258 250 125 0 chrX 25337619 25337675 -137262255 - MER31-int LTR ERV1 -1019 3917 3855 1690 103 45 8 chrX 25337716 25337959 -137261971 + AluSx SINE Alu 52 303 -9 918 113 0 8 chrX 25337963 25338096 -137261834 + L1P LINE L1 11 142 -6004 20998 40 2 1 chrX 25338293 25341695 -137258235 + L1PA5 LINE L1 2745 6152 -2 577 266 65 67 chrX 25341718 25342135 -137257795 - MER31-int LTR ERV1 -1121 3815 3400 1600 148 13 43 chrX 25342210 25342514 -137257416 + AluJo SINE Alu 1 295 -17 346 229 57 105 chrX 25342829 25343039 -137256891 - MER31-int LTR ERV1 -1919 3017 2818 285 237 15 46 chrX 25343134 25343265 -137256665 - MER31-int LTR ERV1 -2185 2751 2625 232 236 0 36 chrX 25344171 25344226 -137255704 + MER34 LTR ERV1 70 122 -420 * 2086 187 58 12 chrX 25344204 25344631 -137255299 + MER39 LTR ERV1 261 707 0 654 236 61 34 chrX 25345835 25346098 -137253832 - LTR37B LTR ERV1 -1 467 198 775 184 164 10 chrX 25346966 25347049 -137252881 + MER44D DNA MER2_type 1 70 -2421 180 0 0 0 chrX 25347049 25347069 -137252861 + (GA)n Simple_repeat Simple_repeat 1 20 0 775 184 164 10 chrX 25347069 25347192 -137252738 + MER44D DNA MER2_type 70 509 -100 234 286 41 0 chrX 25347192 25347290 -137252640 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 446 218 35 0 chrX 25347310 25347397 -137252533 + MER44D DNA MER2_type 598 687 -18 2778 237 165 46 chrX 25347804 25348779 -137251151 + L1MD2 LINE L1 18 1108 -5432 * 5549 225 31 83 chrX 25348764 25350059 -137249871 + L1MD2 LINE L1 3433 4794 -1842 1656 112 134 11 chrX 25350059 25350327 -137249603 + AluSx SINE Alu 2 302 0 5549 225 31 83 chrX 25350327 25350776 -137249154 + L1MD2 LINE L1 4794 5265 -1371 1994 52 0 0 chrX 25350776 25351026 -137248904 - L1PA5 LINE L1 0 6154 5905 5549 225 31 83 chrX 25351026 25351381 -137248549 + L1MD2 LINE L1 5265 5637 -999 1591 174 7 27 chrX 25351381 25351675 -137248255 + AluJo SINE Alu 1 288 -24 5549 225 31 83 chrX 25351675 25352944 -137246986 + L1MD2 LINE L1 5637 6621 -15 1336 181 76 32 chrX 25352945 25353222 -137246708 - AluJo SINE Alu -21 291 3 29 0 0 0 chrX 25353360 25353389 -137246541 + AT_rich Low_complexity Low_complexity 1 29 0 268 302 109 33 chrX 25353416 25353691 -137246239 + HAL1b LINE L1 279 574 -774 1594 208 56 0 chrX 25353819 25354160 -137245770 - MER90 LTR ERV1 -215 360 1 454 253 0 0 chrX 25354723 25354822 -137245108 - MER94 DNA DNA -34 100 2 2223 104 3 3 chrX 25354965 25355262 -137244668 + AluSg SINE Alu 1 297 -13 24 32 0 0 chrX 25355593 25355624 -137244306 + AT_rich Low_complexity Low_complexity 1 31 0 391 173 48 10 chrX 25355624 25355728 -137244202 + L1MA7 LINE L1 6183 6290 -1 413 263 97 70 chrX 25356107 25356520 -137243410 + L1MC/D LINE L1 4282 4705 -1441 30 0 0 0 chrX 25356714 25356744 -137243186 + AT_rich Low_complexity Low_complexity 1 30 0 2225 88 0 36 chrX 25356799 25357106 -137242824 + AluSx SINE Alu 1 296 -16 356 350 47 28 chrX 25357198 25357518 -137242412 + L1MC/D LINE L1 5494 5819 -1989 24 32 0 0 chrX 25357787 25357818 -137242112 + AT_rich Low_complexity Low_complexity 1 31 0 1090 135 0 24 chrX 25357892 25358062 -137241868 - AluSg/x SINE Alu -12 300 135 1469 164 4 0 chrX 25358249 25358505 -137241425 - L1P LINE L1 -1085 5061 4805 * 1507 132 4 0 chrX 25358495 25358738 -137241192 + L1P LINE L1 5057 5300 -846 6609 83 10 0 chrX 25358738 25359707 -137240223 + L1PA11 LINE L1 5197 6174 0 2185 171 81 38 chrX 25360031 25360511 -137239419 + MLT1D LTR MaLR 5 505 0 1507 162 68 145 chrX 25360677 25361234 -137238696 - MER67D LTR ERV1 0 514 1 27 0 0 0 chrX 25361894 25361921 -137238009 + AT_rich Low_complexity Low_complexity 1 27 0 304 235 0 41 chrX 25362628 25362726 -137237204 + HsTC2 DNA Tc2 1 94 -1804 180 0 0 0 chrX 25363111 25363131 -137236799 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chrX 25364431 25364452 -137235478 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 272 318 25 60 chrX 25364609 25364810 -137235120 + HAL1 LINE L1 1259 1452 -1055 327 311 72 62 chrX 25365013 25365318 -137234612 + HAL1b LINE L1 434 741 -607 7234 127 19 24 chrX 25365515 25366232 -137233698 + Tigger3b DNA MER2_type 1 721 -2307 1536 191 17 17 chrX 25366232 25366526 -137233404 + AluJo SINE Alu 1 294 -18 7234 127 19 24 chrX 25366526 25366755 -137233175 + Tigger3b DNA MER2_type 721 950 -2078 2362 88 0 10 chrX 25366755 25367061 -137232869 - AluSq SINE Alu -10 303 1 7234 127 19 24 chrX 25367061 25367351 -137232579 + Tigger3b DNA MER2_type 950 1231 0 21 0 0 0 chrX 25367491 25367512 -137232418 + AT_rich Low_complexity Low_complexity 1 21 0 1780 269 109 60 chrX 25367544 25368883 -137231047 + HAL1 LINE L1 47 1451 -1056 237 267 0 17 chrX 25369137 25369227 -137230703 + G-rich Low_complexity Low_complexity 1 88 0 338 302 94 5 chrX 25369359 25369551 -137230379 + HAL1 LINE L1 1439 1647 -860 190 306 0 0 chrX 25369645 25369694 -137230236 + L2 LINE L2 3262 3310 -3 25 0 0 0 chrX 25370383 25370408 -137229522 + AT_rich Low_complexity Low_complexity 1 25 0 273 377 37 19 chrX 25370592 25370807 -137229123 - MLT1K LTR MaLR -239 349 131 891 311 113 6 chrX 25370842 25371170 -137228760 - LTR16A LTR ERVL -17 433 71 240 278 33 22 chrX 25371276 25371366 -137228564 + C-rich Low_complexity Low_complexity 6 96 0 * 282 269 0 51 chrX 25371301 25371476 -137228454 + CT-rich Low_complexity Low_complexity 2 167 0 898 191 38 0 chrX 25371957 25372114 -137227816 - MER45A DNA AcHobo -4 174 12 2175 188 105 11 chrX 25372339 25372797 -137227133 - MLT1D LTR MaLR -4 501 1 583 184 40 16 chrX 25375834 25375959 -137223971 - MER63 DNA MER1_type -82 754 1 194 268 0 0 chrX 25375998 25376039 -137223891 + MIR SINE MIR 12 52 -210 185 352 0 0 chrX 25376044 25376115 -137223815 + MIR SINE MIR 189 259 -3 340 344 88 25 chrX 25376196 25376513 -137223417 + L2 LINE L2 2612 2948 -366 450 246 80 60 chrX 25377083 25377282 -137222648 - MIR SINE MIR -4 258 56 241 228 0 18 chrX 25377623 25377680 -137222250 - L1ME LINE L1 -307 5814 5759 24 0 0 0 chrX 25378481 25378505 -137221425 + AT_rich Low_complexity Low_complexity 1 24 0 187 349 15 0 chrX 25378948 25379014 -137220916 + MIR SINE MIR 2 68 -194 181 385 0 0 chrX 25379052 25379135 -137220795 - MIR SINE MIR -110 152 70 323 244 231 27 chrX 25379596 25379753 -137220177 + MIR3 SINE MIR 5 187 -21 24 0 0 0 chrX 25381020 25381044 -137218886 + AT_rich Low_complexity Low_complexity 1 24 0 2430 161 39 2 chrX 25381492 25381903 -137218027 + MSTB LTR MaLR 1 426 0 28 29 0 0 chrX 25382223 25382258 -137217672 + AT_rich Low_complexity Low_complexity 1 35 0 182 321 99 12 chrX 25382464 25382545 -137217385 - MIR3 SINE MIR -29 179 92 386 271 279 0 chrX 25382833 25382973 -137216957 + MIR SINE MIR 84 262 0 5395 107 40 30 chrX 25383337 25384640 -137215290 + L1PA16 LINE L1 4842 6157 -9 21 0 0 0 chrX 25384640 25384661 -137215269 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chrX 25384973 25385004 -137214926 + AT_rich Low_complexity Low_complexity 1 31 0 923 184 17 2 chrX 25485327 25485763 -137114167 - ALR/Alpha Satellite centromeric 0 442 1 1195 175 6 1 chrX 25485774 25487629 -137112301 - ALR/Alpha Satellite centromeric 0 1864 1 1213 167 7 2 chrX 25487640 25489495 -137110435 - ALR/Alpha Satellite centromeric 0 1864 1 1190 172 8 2 chrX 25489506 25493210 -137106720 - ALR/Alpha Satellite centromeric 0 3724 1 1111 187 6 1 chrX 25493310 25495239 -137104691 + ALR/Alpha Satellite centromeric 1 1937 -14 1217 180 7 2 chrX 25495250 25498970 -137100960 + ALR/Alpha Satellite centromeric 1 3740 -14 1179 182 5 1 chrX 25498981 25500836 -137099094 + ALR/Alpha Satellite centromeric 1 1862 -14 1169 166 6 1 chrX 25500847 25502191 -137097739 + ALR/Alpha Satellite centromeric 1 1350 -14 866 191 18 0 chrX 25502202 25502370 -137097560 + ALR/Alpha Satellite centromeric 1 171 0 1223 167 7 1 chrX 25502475 25504454 -137095476 - ALR/Alpha Satellite centromeric 0 1990 1 1230 165 7 1 chrX 25504465 25506320 -137093610 - ALR/Alpha Satellite centromeric 0 1865 1 1230 164 8 3 chrX 25506331 25508186 -137091744 - ALR/Alpha Satellite centromeric 0 1865 1 1201 168 6 1 chrX 25508197 25510052 -137089878 - ALR/Alpha Satellite centromeric 0 1864 1 1178 168 7 1 chrX 25510063 25511917 -137088013 - ALR/Alpha Satellite centromeric 0 1865 1 918 214 7 2 chrX 25511930 25512668 -137087262 - ALR/Alpha Satellite centromeric 0 741 1 1230 163 7 2 chrX 25512768 25514485 -137085445 - ALR/Alpha Satellite centromeric 0 1726 1 1216 165 8 3 chrX 25514496 25516351 -137083579 - ALR/Alpha Satellite centromeric 0 1865 1 1230 167 8 3 chrX 25516362 25518217 -137081713 - ALR/Alpha Satellite centromeric 0 1864 1 1213 169 6 1 chrX 25518228 25520083 -137079847 - ALR/Alpha Satellite centromeric 0 1864 1 1160 170 7 1 chrX 25520094 25521949 -137077981 - ALR/Alpha Satellite centromeric 0 1865 1 1201 166 7 1 chrX 25521960 25523815 -137076115 - ALR/Alpha Satellite centromeric 0 1864 1 1255 172 6 1 chrX 25523826 25525680 -137074250 - ALR/Alpha Satellite centromeric 0 1864 1 1130 170 7 1 chrX 25525691 25527546 -137072384 - ALR/Alpha Satellite centromeric 0 1865 1 1255 166 6 1 chrX 25527557 25529412 -137070518 - ALR/Alpha Satellite centromeric 0 1864 1 1203 169 6 1 chrX 25529423 25531278 -137068652 - ALR/Alpha Satellite centromeric 0 1864 1 1162 174 7 2 chrX 25531289 25533142 -137066788 - ALR/Alpha Satellite centromeric 0 1862 1 1195 174 9 2 chrX 25533153 25535117 -137064813 - ALR/Alpha Satellite centromeric -14 1977 1 3249 31 5 0 chrX 25535117 25535500 -137064430 + L1P LINE L1 4007 4391 -1755 994 161 22 1 chrX 25535602 25536199 -137063731 - ALR/Alpha Satellite centromeric 0 609 1 1188 170 6 1 chrX 25536210 25538065 -137061865 - ALR/Alpha Satellite centromeric 0 1864 1 1197 166 6 1 chrX 25538076 25539930 -137060000 - ALR/Alpha Satellite centromeric 0 1864 1 1201 172 6 1 chrX 25539941 25543662 -137056268 - ALR/Alpha Satellite centromeric 0 3741 1 1201 169 8 2 chrX 25543673 25545527 -137054403 - ALR/Alpha Satellite centromeric 0 1863 1 1160 178 6 1 chrX 25545538 25547392 -137052538 - ALR/Alpha Satellite centromeric 0 1863 1 1209 175 6 1 chrX 25547403 25549257 -137050673 - ALR/Alpha Satellite centromeric 0 1863 1 1193 167 6 1 chrX 25549268 25551123 -137048807 - ALR/Alpha Satellite centromeric 0 1864 1 1201 167 6 1 chrX 25551134 25552989 -137046941 - ALR/Alpha Satellite centromeric 0 1864 1 1217 168 6 1 chrX 25553000 25554855 -137045075 - ALR/Alpha Satellite centromeric 0 1864 1 1201 165 7 2 chrX 25554866 25556721 -137043209 - ALR/Alpha Satellite centromeric 0 1863 1 1140 175 2 2 chrX 25556732 25558183 -137041747 - ALR/Alpha Satellite centromeric 0 1450 1 1244 157 8 2 chrX 25558296 25562540 -137037390 - ALR/Alpha Satellite centromeric 0 4269 1 943 172 12 4 chrX 25562552 25563156 -137036774 - ALR/Alpha Satellite centromeric 0 608 1 1216 166 6 1 chrX 25563178 25565210 -137034720 - ALR/Alpha Satellite centromeric 0 2043 1 1198 172 9 2 chrX 25565221 25567079 -137032851 - ALR/Alpha Satellite centromeric 0 1870 1 1168 164 8 2 chrX 25567090 25569212 -137030718 - ALR/Alpha Satellite centromeric 0 2134 1 1207 165 7 1 chrX 25569223 25571346 -137028584 - ALR/Alpha Satellite centromeric 0 2134 1 1204 173 9 2 chrX 25571357 25575752 -137024178 - ALR/Alpha Satellite centromeric 0 4424 1 1186 175 6 1 chrX 25575763 25579483 -137020447 - ALR/Alpha Satellite centromeric 0 3740 1 1217 169 6 1 chrX 25579494 25581348 -137018582 - ALR/Alpha Satellite centromeric 0 1863 1 1216 178 9 2 chrX 25581359 25583487 -137016443 - ALR/Alpha Satellite centromeric 0 2143 1 8475 32 0 0 chrX 25583589 25585374 -137014556 + L1HS LINE L1 4370 6155 0 1286 162 7 0 chrX 25585376 25587147 -137012783 - ALR/Alpha Satellite centromeric 0 1782 1 1410 143 4 1 chrX 25587158 25595835 -137004095 + ALR/Alpha Satellite centromeric 1 8708 0 1387 144 3 0 chrX 25595940 25599038 -137000892 + ALR/Alpha Satellite centromeric 1 3107 -35 1217 169 6 1 chrX 25599139 25601009 -136998921 - ALR/Alpha Satellite centromeric 0 1880 1 1152 171 6 1 chrX 25601020 25602874 -136997056 - ALR/Alpha Satellite centromeric 0 1863 1 1199 167 7 1 chrX 25602885 25604740 -136995190 - ALR/Alpha Satellite centromeric 0 1864 1 1192 167 6 1 chrX 25604751 25606606 -136993324 - ALR/Alpha Satellite centromeric 0 1864 1 1186 172 7 1 chrX 25606617 25608471 -136991459 - ALR/Alpha Satellite centromeric 0 1864 1 1132 175 6 1 chrX 25608482 25610336 -136989594 - ALR/Alpha Satellite centromeric 0 1863 1 1195 171 6 1 chrX 25610347 25612202 -136987728 - ALR/Alpha Satellite centromeric 0 1864 1 1213 168 6 2 chrX 25612213 25614067 -136985863 - ALR/Alpha Satellite centromeric 0 1862 1 1164 179 7 2 chrX 25614078 25617238 -136982692 - ALR/Alpha Satellite centromeric 0 3176 1 590 144 61 23 chrX 25817423 25817555 -136782375 + L1MA8 LINE L1 6154 6290 -1 258 176 0 0 chrX 25817824 25817875 -136782055 + (ATG)n Simple_repeat Simple_repeat 3 53 0 279 71 0 0 chrX 25818204 25818246 -136781684 + (TC)n Simple_repeat Simple_repeat 2 43 0 243 0 0 0 chrX 25818249 25818276 -136781654 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chrX 25818808 25818836 -136781094 + AT_rich Low_complexity Low_complexity 1 28 0 390 284 107 20 chrX 25819355 25819552 -136780378 - Charlie8 DNA MER1_type -2177 240 27 483 314 54 25 chrX 25819792 25819996 -136779934 + MIR SINE MIR 53 262 0 1193 266 30 35 chrX 25820148 25820607 -136779323 + L1ME2 LINE L1 5699 6155 -9 4973 107 24 14 chrX 25821032 25821790 -136778140 + L1PA16 LINE L1 5399 6163 -3 2069 130 31 0 chrX 25822291 25822644 -136777286 + L1MA5 LINE L1 5935 6298 -2 4793 254 65 12 chrX 25822811 25823525 -136776405 + L1M4 LINE L1 16 690 -5852 495 33 0 0 chrX 25823525 25823586 -136776344 + (CA)n Simple_repeat Simple_repeat 2 62 0 315 0 0 0 chrX 25823585 25823620 -136776310 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 4793 254 65 12 chrX 25823586 25824280 -136775650 + L1M4 LINE L1 690 1464 -5078 4477 232 50 28 chrX 25824263 25824755 -136775175 + L1M4 LINE L1 3936 4416 -2228 * 2417 74 0 0 chrX 25824755 25825054 -136774876 + AluSg SINE Alu 1 299 -11 4477 232 50 28 chrX 25825054 25825953 -136773977 + L1M4 LINE L1 4416 5358 -1286 630 112 19 10 chrX 25825961 25826076 -136773854 + L1MA4 LINE L1 6110 6214 -86 423 183 0 12 chrX 25826064 25826146 -136773784 + L1M4 LINE L1 5345 5425 -1219 * 418 104 9 66 chrX 25826140 25826246 -136773684 + L1M LINE L1 5789 5888 -756 * 21 0 0 0 chrX 25828917 25828938 -136770992 + AT_rich Low_complexity Low_complexity 1 21 0 2210 192 103 2 chrX 25830651 25831105 -136768825 + MLT1D LTR MaLR 6 505 0 231 325 26 18 chrX 25831803 25831917 -136768013 + MIR3 SINE MIR 85 199 -9 776 239 58 10 chrX 25832154 25832359 -136767571 - MER58C DNA MER1_type 0 215 1 336 200 5 7 chrX 25833202 25833275 -136766655 + MLT1D LTR MaLR 5 65 -440 371 361 16 0 chrX 25834200 25834322 -136765608 + MIR3 SINE MIR 57 180 -28 435 38 0 0 chrX 25834592 25834645 -136765285 + (TA)n Simple_repeat Simple_repeat 2 54 0 240 35 0 0 chrX 25835451 25835480 -136764450 + (T)n Simple_repeat Simple_repeat 1 29 0 314 347 54 42 chrX 25835945 25836112 -136763818 - MIR3 SINE MIR -23 185 17 2443 226 47 43 chrX 25836315 25837040 -136762890 + MER97c DNA MER1_type? 8 735 -355 22 0 0 0 chrX 25837134 25837156 -136762774 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chrX 25837277 25837310 -136762620 + AT_rich Low_complexity Low_complexity 1 33 0 600 211 146 0 chrX 25837937 25838108 -136761822 - L1MD3 LINE L1 -8 7987 7792 1171 113 21 0 chrX 25838171 25838357 -136761573 - L1MA3 LINE L1 -3 6302 6113 21 104 0 0 chrX 25838363 25838440 -136761490 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chrX 25839323 25839345 -136760585 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chrX 25840044 25840079 -136759851 + AT_rich Low_complexity Low_complexity 1 35 0 181 244 44 22 chrX 25840280 25840325 -136759605 + L2 LINE L2 3211 3256 -16 232 250 109 33 chrX 25841972 25842064 -136757866 + MLT1H LTR MaLR 39 137 -412 596 300 6 12 chrX 25842181 25842341 -136757589 + MLT1H LTR MaLR 98 256 -293 4827 160 26 5 chrX 25843681 25844548 -136755382 - L1MC1 LINE L1 -18 6315 5430 236 365 0 37 chrX 25844563 25844670 -136755260 - L3 LINE CR1 -5 1572 1470 2362 246 99 52 chrX 25844740 25845853 -136754077 + L2 LINE L2 2112 3270 -43 3046 50 5 0 chrX 25845857 25846241 -136753689 + L1PA8 LINE L1 5785 6170 -2 31 26 0 0 chrX 25848085 25848123 -136751807 + AT_rich Low_complexity Low_complexity 1 38 0 1093 251 67 71 chrX 25848156 25848622 -136751308 + LTR16B LTR ERVL 1 464 0 370 243 63 155 chrX 25850676 25850960 -136748970 + MIR SINE MIR 5 262 0 24 0 0 0 chrX 25851112 25851136 -136748794 + AT_rich Low_complexity Low_complexity 1 24 0 398 341 243 11 chrX 25851969 25852837 -136747093 - L2 LINE L2 -467 2847 1779 2008 138 3 0 chrX 25852913 25853219 -136746711 - AluSx SINE Alu 0 307 1 23 33 0 0 chrX 25853325 25853355 -136746575 + AT_rich Low_complexity Low_complexity 1 30 0 324 56 56 0 chrX 25853416 25853470 -136746460 - L1MA1 LINE L1 0 6302 6246 2085 240 28 19 chrX 25853893 25854319 -136745611 - MER97b DNA MER1_type? -463 590 156 14313 145 25 2 chrX 25854319 25856684 -136743246 + Tigger1 DNA MER2_type 1 2418 0 2085 240 28 19 chrX 25856684 25856799 -136743131 - MER97b DNA MER1_type? -897 156 44 189 0 0 0 chrX 25857159 25857180 -136742750 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2089 94 0 4 chrX 25857180 25857456 -136742474 - AluSc SINE Alu -32 277 3 45 83 0 0 chrX 25857611 25857719 -136742211 + AT_rich Low_complexity Low_complexity 1 108 0 288 29 0 0 chrX 25857947 25857982 -136741948 + Tigger1 DNA MER2_type 2053 2087 -331 601 306 99 9 chrX 25858085 25858317 -136741613 + MIR SINE MIR 7 259 -3 21 36 0 0 chrX 25858324 25858352 -136741578 + AT_rich Low_complexity Low_complexity 1 28 0 2162 77 10 32 chrX 25858354 25858667 -136741263 - AluSq SINE Alu -7 306 1 24 0 0 0 chrX 25858900 25858924 -136741006 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 25859751 25859779 -136740151 + AT_rich Low_complexity Low_complexity 1 28 0 1950 131 7 3 chrX 25860787 25861078 -136738852 - AluSx SINE Alu -18 294 3 1017 213 0 33 chrX 25861108 25861319 -136738611 - MER58A DNA MER1_type -2 222 19 283 239 57 11 chrX 25861386 25861474 -136738456 + MIR SINE MIR 168 259 -3 3152 300 92 23 chrX 25862265 25863056 -136736874 - L2 LINE L2 -94 3219 2484 2222 114 0 3 chrX 25863056 25863355 -136736575 + AluSx SINE Alu 1 298 -14 3152 300 92 23 chrX 25863355 25864089 -136735841 - L2 LINE L2 -829 2484 1592 2245 108 9 9 chrX 25864089 25864450 -136735480 + L1PB1 LINE L1 5804 6164 0 3152 300 92 23 chrX 25864450 25864517 -136735413 - L2 LINE L2 -1721 1592 1531 473 266 147 27 chrX 25864550 25864734 -136735196 - MIR SINE MIR -56 206 1 184 357 76 38 chrX 25864748 25864905 -136735025 - L2 LINE L2 -1808 1506 1344 277 333 73 18 chrX 25864915 25865080 -136734850 - L2 LINE L2 -1944 1370 1197 677 334 23 30 chrX 25865161 25865463 -136734467 + MLT1J LTR MaLR 209 508 -3 214 331 77 23 chrX 25865551 25865681 -136734249 - L2 LINE L2 -2099 1215 1079 * 284 352 52 28 chrX 25865673 25865886 -136734044 - L3b LINE CR1 -136 1447 1230 253 275 51 51 chrX 25866140 25866274 -136733656 + MIR SINE MIR 34 165 -43 237 303 34 22 chrX 25866980 25867069 -136732861 - L3b LINE CR1 -306 1277 1188 21 36 0 0 chrX 25867237 25867265 -136732665 + AT_rich Low_complexity Low_complexity 1 28 0 376 181 28 0 chrX 25867498 25867570 -136732360 - L1MB5 LINE L1 0 6174 6101 2826 166 13 62 chrX 25867590 25868221 -136731709 - L1MB8 LINE L1 -1 6177 5578 24 0 0 0 chrX 25869143 25869167 -136730763 + AT_rich Low_complexity Low_complexity 1 24 0 218 277 12 72 chrX 25869580 25869663 -136730267 - MER5A DNA MER1_type -95 94 17 * 390 240 0 0 chrX 25869589 25869664 -136730266 + MER5A DNA MER1_type 114 188 -1 383 360 0 15 chrX 25869702 25869838 -136730092 + MIR SINE MIR 8 141 -121 1664 139 7 48 chrX 25869926 25870220 -136729710 - AluJo SINE Alu -30 282 1 296 275 0 0 chrX 25870223 25870292 -136729638 - MER94 DNA DNA -59 75 7 272 184 0 0 chrX 25870420 25870469 -136729461 + MER66A LTR ERV1 290 338 -140 2204 108 0 9 chrX 25870996 25871312 -136728618 - AluSq SINE Alu 0 313 1 2602 51 0 0 chrX 25871421 25871732 -136728198 - AluY SINE Alu 0 311 1 22 0 0 0 chrX 25871871 25871893 -136728037 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrX 25872253 25872295 -136727635 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chrX 25873031 25873067 -136726863 + AT_rich Low_complexity Low_complexity 1 36 0 402 230 8 87 chrX 25873291 25873417 -136726513 - MLT1I LTR MaLR 0 409 294 900 153 0 73 chrX 25873427 25873604 -136726326 + MSTB LTR MaLR 1 164 -262 324 350 17 26 chrX 25873711 25873828 -136726102 - MER5A DNA MER1_type -3 186 71 1444 152 74 4 chrX 25873828 25874084 -136725846 + MSTB1 LTR MaLR 158 431 -1 572 289 71 26 chrX 25874091 25874357 -136725573 - MLT1I LTR MaLR -119 290 13 510 292 11 37 chrX 25874944 25875118 -136724812 - MER5A DNA MER1_type -3 186 6 599 218 48 7 chrX 25875923 25876070 -136723860 - MER92B LTR ERV1 0 636 484 256 284 165 0 chrX 25876070 25876179 -136723751 - MIR SINE MIR -35 227 101 1824 208 42 38 chrX 25876190 25876670 -136723260 - MER92B LTR ERV1 -145 491 10 246 286 218 0 chrX 25876710 25876843 -136723087 - MIR SINE MIR 0 262 101 27 0 0 0 chrX 25877315 25877342 -136722588 + AT_rich Low_complexity Low_complexity 1 27 0 744 261 70 23 chrX 25878166 25878381 -136721549 - L3 LINE CR1 -4 1573 1349 785 169 59 50 chrX 25878575 25878941 -136720989 + LTR37A LTR ERV1 1 426 0 2316 241 89 68 chrX 25879474 25880264 -136719666 + L1M4c LINE L1 916 1745 -4639 2081 109 7 0 chrX 25880264 25880540 -136719390 + AluSq SINE Alu 1 278 -35 2316 241 89 68 chrX 25880540 25881024 -136718906 + L1M4c LINE L1 1745 2217 -4167 292 240 40 0 chrX 25881025 25881100 -136718830 + LTR37A LTR ERV1 294 371 -55 614 223 160 0 chrX 25881242 25881417 -136718513 + MER3 DNA MER1_type 2 204 -5 22 0 0 0 chrX 25881618 25881640 -136718290 + AT_rich Low_complexity Low_complexity 1 22 0 212 154 0 0 chrX 25881800 25881839 -136718091 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1151 14 0 14 chrX 25881949 25882089 -136717841 + L1PA2 LINE L1 6015 6152 -3 296 240 64 22 chrX 25882339 25882443 -136717487 - MER110A LTR ERV1 -10 458 376 1245 192 56 37 chrX 25882833 25883208 -136716722 - LTR37A LTR ERV1 -12 414 33 25 0 0 0 chrX 25884104 25884129 -136715801 + AT_rich Low_complexity Low_complexity 1 25 0 185 91 0 30 chrX 25884255 25884288 -136715642 + (TA)n Simple_repeat Simple_repeat 2 33 0 994 199 89 79 chrX 25884979 25885295 -136714635 + MLT1A1 LTR MaLR 1 319 -46 305 264 101 14 chrX 25885556 25885704 -136714226 - L1ME3A LINE L1 -222 5948 5788 2052 184 108 5 chrX 25889222 25889333 -136710597 - L1MB8 LINE L1 -21 6157 6047 1786 260 131 9 chrX 25889333 25890018 -136709912 - L1MD3 LINE L1 -1973 6022 5254 3264 64 2 18 chrX 25890021 25890476 -136709454 - LTR7 LTR ERV1 -2 448 1 2323 98 50 13 chrX 25890476 25890852 -136709078 - HERVH LTR ERV1 0 7713 7324 1148 121 106 0 chrX 25890852 25891051 -136708879 - HERVH LTR ERV1 -1894 5819 5600 1155 173 0 0 chrX 25891052 25891243 -136708687 - HERVH LTR ERV1 -2564 5149 4959 * 6490 107 14 8 chrX 25891242 25892718 -136707212 - HERVH LTR ERV1 -1818 5273 3492 884 136 27 0 chrX 25892708 25892855 -136707075 - HERVH LTR ERV1 -4423 3290 3140 * 14241 104 15 43 chrX 25892849 25895671 -136704259 - HERVH LTR ERV1 -4726 2987 1 3284 66 2 18 chrX 25895673 25896128 -136703802 - LTR7 LTR ERV1 -2 448 1 1094 235 40 0 chrX 25896128 25896430 -136703500 - L1MD3 LINE L1 -889 5257 4944 560 170 9 0 chrX 25896435 25896541 -136703389 - FLAM_C SINE Alu -3 140 34 247 150 0 0 chrX 25896547 25896587 -136703343 - L1 LINE L1 -1191 4955 4916 424 219 234 7 chrX 25896623 25896760 -136703170 - MER5A DNA MER1_type -2 187 20 919 151 79 0 chrX 25896760 25896912 -136703018 - AluJ SINE Alu -11 301 138 1782 138 61 28 chrX 25896912 25897275 -136702655 - THE1C LTR MaLR 0 375 1 692 192 23 0 chrX 25897284 25897414 -136702516 - AluJ SINE Alu -169 133 1 187 259 103 0 chrX 25898095 25898153 -136701777 + MIR SINE MIR 92 155 -107 340 213 170 0 chrX 25898595 25898689 -136701241 - MLT1-int LTR MaLR -1253 118 9 21 0 0 0 chrX 25899238 25899259 -136700671 + AT_rich Low_complexity Low_complexity 1 21 0 887 164 13 13 chrX 25900132 25900291 -136699639 - AluJb SINE Alu -13 299 141 2093 142 18 24 chrX 25900657 25900996 -136698934 + MER1B DNA MER1_type 1 337 0 1922 125 0 11 chrX 25901068 25901355 -136698575 - AluSx SINE Alu -1 311 28 210 118 0 0 chrX 25901371 25901405 -136698525 + (T)n Simple_repeat Simple_repeat 1 34 0 235 258 0 0 chrX 25901405 25901467 -136698463 - AluSp SINE Alu -138 165 104 210 169 28 14 chrX 25901868 25901939 -136697991 + (TA)n Simple_repeat Simple_repeat 1 72 0 219 320 39 0 chrX 25902082 25902160 -136697770 - MIR SINE MIR 0 262 182 309 216 14 0 chrX 25902372 25902446 -136697484 - LTR50 LTR ERVL -720 75 1 315 255 94 19 chrX 25902539 25902645 -136697285 + MIR3 SINE MIR 95 208 0 404 288 206 33 chrX 25903680 25903881 -136696049 - L2 LINE L2 -90 3223 3058 2107 155 3 24 chrX 25903881 25904262 -136695668 - THE1C LTR MaLR -2 373 1 404 288 206 33 chrX 25904262 25904439 -136695491 - L2 LINE L2 -255 3058 2778 5596 257 44 12 chrX 25904995 25905200 -136694730 - L1MEc LINE L1 -2096 4050 3853 2050 147 0 13 chrX 25905200 25905514 -136694416 - AluSx SINE Alu -2 310 1 5596 257 44 12 chrX 25905514 25907218 -136692712 - L1MEc LINE L1 -2293 3853 2110 407 316 158 36 chrX 25909402 25909731 -136690199 + L2 LINE L2 2944 3312 -1 205 309 139 72 chrX 25909780 25910182 -136689748 - L2 LINE L2 -528 2786 2358 350 289 0 35 chrX 25910271 25910401 -136689529 - MIR SINE MIR -48 160 34 280 308 9 9 chrX 25910458 25910565 -136689365 + (TATATG)n Simple_repeat Simple_repeat 1 107 0 25 51 0 0 chrX 25910909 25910948 -136688982 + AT_rich Low_complexity Low_complexity 1 39 0 842 154 0 0 chrX 25911533 25911675 -136688255 + FRAM SINE Alu 30 171 0 199 266 51 51 chrX 25911794 25911873 -136688057 + MIR SINE MIR 111 189 -73 2222 112 6 37 chrX 25912917 25913265 -136686665 - MER1B DNA MER1_type 0 337 1 428 318 14 14 chrX 25913438 25913586 -136686344 - MIR SINE MIR -6 256 109 270 125 0 0 chrX 25913874 25913922 -136686008 + (TA)n Simple_repeat Simple_repeat 2 49 0 224 321 164 6 chrX 25914526 25914685 -136685245 - MER5A DNA MER1_type -2 187 4 666 128 48 16 chrX 25915705 25915830 -136684100 - L1MB3 LINE L1 -1 6182 6054 379 285 111 52 chrX 25916797 25916969 -136682961 - L2 LINE L2 -485 2829 2648 741 299 71 0 chrX 25917464 25917688 -136682242 + MIR SINE MIR 18 257 -5 22 0 0 0 chrX 25917689 25917711 -136682219 + AT_rich Low_complexity Low_complexity 1 22 0 244 211 0 53 chrX 25919232 25919308 -136680622 - HsTC2 DNA Tc2 -1801 97 26 234 179 0 0 chrX 25921085 25921124 -136678806 + L1ME2 LINE L1 6088 6126 -38 2285 104 7 0 chrX 25921125 25921434 -136678496 - AluSp SINE Alu -2 311 1 397 254 38 70 chrX 25921506 25921719 -136678211 + L1MC4 LINE L1 7836 8041 -1 27 29 0 0 chrX 25921747 25921781 -136678149 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chrX 25921855 25921892 -136678038 + AT_rich Low_complexity Low_complexity 1 37 0 34 72 0 0 chrX 25923167 25923236 -136676694 + AT_rich Low_complexity Low_complexity 1 69 0 2093 91 14 0 chrX 25923604 25923880 -136676050 + AluSc SINE Alu 1 280 -29 991 200 25 0 chrX 25924008 25924208 -136675722 - MER3 DNA MER1_type -4 205 1 1332 298 110 85 chrX 25924586 25924860 -136675070 + L2 LINE L2 1199 1465 -1848 1639 180 7 17 chrX 25924860 25925154 -136674776 - AluJo SINE Alu -21 291 1 1332 298 110 85 chrX 25925154 25926662 -136673268 + L2 LINE L2 1465 3056 -257 1675 162 64 3 chrX 25927010 25927337 -136672593 - MER7A DNA MER2_type -1 345 1 24 0 0 0 chrX 25928211 25928235 -136671695 + AT_rich Low_complexity Low_complexity 1 24 0 2360 86 0 6 chrX 25928587 25928900 -136671030 - AluY SINE Alu 0 311 1 2285 66 0 17 chrX 25929715 25930042 -136669888 + AluY SINE Alu 1 322 0 3927 142 3 2 chrX 25931529 25932163 -136667767 - MER41B LTR ERV1 0 635 1 3122 178 44 18 chrX 25932325 25933012 -136666918 - L1MB8 LINE L1 -10 6168 5464 1568 214 42 35 chrX 25933028 25933482 -136666448 - L1MB8 LINE L1 -933 5213 4757 233 336 35 49 chrX 25933998 25934141 -136665789 + MIR3 SINE MIR 67 207 -1 961 201 0 0 chrX 25934315 25934474 -136665456 + FRAM SINE Alu 1 151 -25 231 114 0 0 chrX 25934523 25934558 -136665372 + (TATG)n Simple_repeat Simple_repeat 2 36 0 244 355 0 0 chrX 25934673 25934766 -136665164 + MIR3 SINE MIR 107 199 -9 6243 179 16 14 chrX 25935622 25937647 -136662283 + L1PA14 LINE L1 4127 6152 -9 297 239 181 29 chrX 25937659 25937797 -136662133 + MER104 DNA Tc2 16 174 -6 196 226 189 0 chrX 25939169 25939222 -136660708 - L2 LINE L2 -5 3308 3246 180 0 0 0 chrX 25939940 25939960 -136659970 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 300 350 21 14 chrX 25940073 25940216 -136659714 + L3 LINE CR1 1397 1540 -37 30 45 0 0 chrX 25940257 25940301 -136659629 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chrX 25940609 25940641 -136659289 + AT_rich Low_complexity Low_complexity 1 32 0 461 347 68 28 chrX 25940667 25940918 -136659012 + L3 LINE CR1 1264 1524 -53 21 0 0 0 chrX 25941151 25941172 -136658758 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrX 25942046 25942096 -136657834 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chrX 25942110 25942132 -136657798 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrX 25942477 25942503 -136657427 + AT_rich Low_complexity Low_complexity 1 26 0 5379 91 3 0 chrX 25942986 25943725 -136656205 + L1PA8 LINE L1 5419 6159 -13 21 0 0 0 chrX 25943725 25943746 -136656184 + AT_rich Low_complexity Low_complexity 1 21 0 252 184 0 0 chrX 25943836 25943885 -136656045 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 316 350 124 5 chrX 25944298 25944515 -136655415 + MIR SINE MIR 2 244 -18 290 323 61 20 chrX 25944596 25944695 -136655235 - L2 LINE L2 -2 3270 3168 230 290 0 29 chrX 25945158 25945227 -136654703 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1816 51 0 40 chrX 25945429 25945682 -136654248 + L1PA5 LINE L1 5905 6147 -7 201 352 46 19 chrX 25945812 25945920 -136654010 - L2 LINE L2 -219 3053 2943 400 315 183 0 chrX 25946046 25946265 -136653665 - L2 LINE L2 -1146 2168 1910 458 303 29 49 chrX 25948619 25948863 -136651067 + L2 LINE L2 3072 3310 -3 2115 259 43 3 chrX 25948927 25949600 -136650330 - L1M4 LINE L1 -3092 3865 3166 1877 279 90 22 chrX 25949656 25950125 -136649805 - L1M4 LINE L1 -6256 603 89 489 34 0 0 chrX 25950125 25950184 -136649746 + (TG)n Simple_repeat Simple_repeat 2 60 0 1877 279 90 22 chrX 25950184 25950267 -136649663 - L1M4 LINE L1 -6770 89 13 14067 32 11 0 chrX 25950805 25952513 -136647417 - L1P LINE L1 -1163 4983 3257 1212 14 0 0 chrX 25952513 25952652 -136647278 + L1PA2 LINE L1 6016 6155 0 22 35 0 0 chrX 25952752 25952781 -136647149 + AT_rich Low_complexity Low_complexity 1 29 0 2237 96 3 0 chrX 25953035 25953336 -136646594 + AluSg SINE Alu 1 302 -8 1798 153 38 6 chrX 25953345 25953692 -136646238 - L1MA8 LINE L1 -1 6290 5933 23 54 0 0 chrX 25954534 25954571 -136645359 + AT_rich Low_complexity Low_complexity 1 37 0 322 217 72 12 chrX 25954761 25954844 -136645086 - L1ME LINE L1 -542 5579 5492 215 219 0 0 chrX 25956024 25956065 -136643865 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2554 51 0 6 chrX 25956083 25956395 -136643535 + AluY SINE Alu 1 310 -1 249 108 0 0 chrX 25956677 25956714 -136643216 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2843 46 3 0 chrX 25956714 25957064 -136642866 - L1PA8 LINE L1 -24 6148 5798 316 219 16 0 chrX 25957156 25957220 -136642710 - MER20 DNA MER1_type -154 65 1 1318 193 87 40 chrX 25957903 25958224 -136641706 - MER2 DNA MER2_type -6 339 4 393 58 0 0 chrX 25958225 25958277 -136641653 + (TG)n Simple_repeat Simple_repeat 1 52 0 328 330 67 26 chrX 25958327 25958672 -136641258 - HAL1b LINE L1 -679 669 311 21 57 0 0 chrX 25958821 25958856 -136641074 + AT_rich Low_complexity Low_complexity 1 35 0 303 319 35 50 chrX 25959703 25959985 -136639945 - L1MC/D LINE L1 -1965 5843 5566 214 343 81 19 chrX 25962864 25963074 -136636856 + L2 LINE L2 2100 2322 -992 1430 209 60 2 chrX 25963653 25964074 -136635856 - L1MCa LINE L1 -3592 2834 2375 249 119 0 0 chrX 25964074 25964116 -136635814 + (TA)n Simple_repeat Simple_repeat 1 42 0 1430 209 60 2 chrX 25964116 25964256 -136635674 - L1MCa LINE L1 -4051 2375 2245 275 70 93 0 chrX 25964265 25964308 -136635622 - L1PA6 LINE L1 -360 5794 5748 2435 73 3 28 chrX 25964309 25964665 -136635265 + L1PA6 LINE L1 5801 6147 -7 280 257 137 69 chrX 25965467 25965642 -136634288 + MIR SINE MIR 65 251 -11 1489 153 143 20 chrX 25965663 25965963 -136633967 - MER44D DNA MER2_type -1 608 2 204 40 0 0 chrX 25965967 25965992 -136633938 + (TTA)n Simple_repeat Simple_repeat 2 26 0 714 196 139 0 chrX 25966359 25966517 -136633413 + MER58A DNA MER1_type 37 216 -8 8093 20 0 0 chrX 25966517 25967603 -136632327 - L1PA3 LINE L1 -633 5522 4437 5502 10 0 0 chrX 25967603 25968218 -136631712 + L1PA3 LINE L1 5524 6141 -14 22 0 0 0 chrX 25968359 25968381 -136631549 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 25969102 25969129 -136630801 + AT_rich Low_complexity Low_complexity 1 27 0 14232 33 5 0 chrX 25972397 25974116 -136625814 - L1P LINE L1 -1163 4983 3257 1212 14 0 0 chrX 25974116 25974255 -136625675 + L1PA2 LINE L1 6016 6155 0 22 35 0 0 chrX 25974355 25974384 -136625546 + AT_rich Low_complexity Low_complexity 1 29 0 2237 96 3 0 chrX 25974638 25974939 -136624991 + AluSg SINE Alu 1 302 -8 1798 153 38 6 chrX 25974948 25975295 -136624635 - L1MA8 LINE L1 -1 6290 5933 22 56 0 0 chrX 25976137 25976173 -136623757 + AT_rich Low_complexity Low_complexity 1 36 0 322 217 72 12 chrX 25976363 25976446 -136623484 - L1ME LINE L1 -542 5579 5492 215 219 0 0 chrX 25977626 25977667 -136622263 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2537 52 0 7 chrX 25977685 25977995 -136621935 + AluY SINE Alu 1 308 -3 249 108 0 0 chrX 25978277 25978314 -136621616 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2843 46 3 0 chrX 25978314 25978664 -136621266 - L1PA8 LINE L1 -24 6148 5798 302 234 16 0 chrX 25978756 25978820 -136621110 - MER20 DNA MER1_type -154 65 1 1302 196 87 40 chrX 25979503 25979824 -136620106 - MER2 DNA MER2_type -6 339 4 393 58 0 0 chrX 25979825 25979877 -136620053 + (TG)n Simple_repeat Simple_repeat 1 52 0 328 330 67 26 chrX 25979927 25980272 -136619658 - HAL1b LINE L1 -679 669 311 21 57 0 0 chrX 25980421 25980456 -136619474 + AT_rich Low_complexity Low_complexity 1 35 0 303 319 35 50 chrX 25981303 25981585 -136618345 - L1MC/D LINE L1 -1965 5843 5566 214 343 81 19 chrX 25984468 25984678 -136615252 + L2 LINE L2 2100 2322 -992 255 346 45 45 chrX 25985370 25985526 -136614404 + MIR SINE MIR 57 212 -50 325 261 62 72 chrX 25985530 25985725 -136614205 + L1ME4a LINE L1 5751 5943 -178 21 36 0 0 chrX 25986139 25986167 -136613763 + AT_rich Low_complexity Low_complexity 1 28 0 243 274 0 0 chrX 25986823 25986976 -136612954 + (TA)n Simple_repeat Simple_repeat 1 153 0 2086 113 0 3 chrX 25986977 25987260 -136612670 - AluSq SINE Alu -31 282 1 529 110 0 0 chrX 25987695 25987768 -136612162 + 5S rRNA rRNA 49 121 0 369 0 0 0 chrX 25988835 25988876 -136611054 + (TG)n Simple_repeat Simple_repeat 2 42 0 241 382 34 22 chrX 25988935 25989113 -136610817 + L2 LINE L2 2479 2658 -656 277 332 109 21 chrX 25989210 25989403 -136610527 - MIR SINE MIR 0 262 53 2353 65 0 3 chrX 25989415 25989708 -136610222 + AluY SINE Alu 1 292 -19 1619 137 7 46 chrX 25990367 25990651 -136609279 - AluJo SINE Alu -39 273 1 296 275 0 0 chrX 25990654 25990723 -136609207 - MER94 DNA DNA -59 75 7 272 184 0 0 chrX 25990851 25990900 -136609030 + MER66B LTR ERV1 298 346 -140 2363 48 10 19 chrX 25991427 25991741 -136608189 - AluY SINE Alu 0 311 1 2360 86 0 6 chrX 25992557 25992870 -136607060 + AluY SINE Alu 1 311 0 210 169 28 14 chrX 25993550 25993621 -136606309 + (TA)n Simple_repeat Simple_repeat 1 72 0 219 320 39 0 chrX 25993764 25993842 -136606088 - MIR SINE MIR 0 262 182 309 216 14 0 chrX 25994064 25994138 -136605792 - LTR50 LTR ERVL -720 75 1 315 255 94 19 chrX 25994231 25994337 -136605593 + MIR3 SINE MIR 95 208 0 266 319 26 26 chrX 25995806 25995922 -136604008 - L3 LINE CR1 -107 1470 1355 23 78 0 0 chrX 25996061 25996112 -136603818 + AT_rich Low_complexity Low_complexity 1 51 0 186 309 10 62 chrX 25996215 25996312 -136603618 - MIR SINE MIR -76 186 95 212 154 0 0 chrX 25997231 25997270 -136602660 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chrX 25997430 25997452 -136602478 + AT_rich Low_complexity Low_complexity 1 22 0 614 223 160 0 chrX 25997653 25997828 -136602102 - MER3 DNA MER1_type -5 204 2 292 240 40 0 chrX 25997970 25998045 -136601885 - LTR37A LTR ERV1 -55 371 294 454 199 123 29 chrX 25998046 25998217 -136601713 - L1M4c LINE L1 -4167 2479 2293 536 316 44 12 chrX 25998260 25998510 -136601420 - L1M4c LINE L1 -4493 2153 1896 342 380 37 37 chrX 25999773 26000097 -136599833 + L2 LINE L2 2943 3266 -6 24 0 0 0 chrX 26000818 26000842 -136599088 + AT_rich Low_complexity Low_complexity 1 24 0 2374 212 21 75 chrX 26003421 26003671 -136596259 + L1 LINE L1 4543 4805 -1341 409 187 76 40 chrX 26003671 26003819 -136596111 + LTR19C LTR ERV1 39 227 -552 2374 212 21 75 chrX 26003819 26004345 -136595585 + L1 LINE L1 4805 5331 -815 256 195 23 23 chrX 26004469 26004556 -136595374 + L1MA4 LINE L1 2039 2125 -4724 4080 191 36 1 chrX 26004635 26005484 -136594446 + L1MA4 LINE L1 4565 5443 -1405 1905 136 0 37 chrX 26006187 26006511 -136593419 - AluJo SINE Alu 0 312 1 2769 265 87 5 chrX 26006869 26006970 -136592960 - L1M4c LINE L1 -5645 897 806 333 0 0 0 chrX 26006970 26007007 -136592923 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 513 32 0 0 chrX 26007006 26007069 -136592861 + (TG)n Simple_repeat Simple_repeat 2 64 0 2769 265 87 5 chrX 26007007 26007782 -136592148 - L1M4c LINE L1 -5736 806 16 1836 144 34 8 chrX 26007956 26008311 -136591619 - L1MA5 LINE L1 -2 6298 5935 5001 217 30 20 chrX 26008839 26009985 -136589945 + L1M2 LINE L1 2 1158 -5691 2508 119 18 2 chrX 26010117 26010511 -136589419 + L1PA16 LINE L1 5758 6157 -9 3718 204 32 2 chrX 26010521 26010871 -136589059 + L1MA4 LINE L1 6130 6468 -534 591 15 0 0 chrX 26010871 26010939 -136588991 + (TA)n Simple_repeat Simple_repeat 1 68 0 3718 204 32 2 chrX 26010939 26011401 -136588529 + L1MA4 LINE L1 6468 6966 -36 1263 222 48 14 chrX 26011787 26012143 -136587787 + L1MB8 LINE L1 5805 6172 -6 8022 107 8 55 chrX 26013156 26014755 -136585175 + HERVH LTR ERV1 335 2100 -5613 6922 155 22 7 chrX 26015005 26016221 -136583709 + Tigger1 DNA MER2_type 657 1891 -527 4018 165 109 35 chrX 26016327 26017373 -136582557 + L1MCa LINE L1 908 2030 -4396 283 256 13 0 chrX 26017392 26017470 -136582460 + Tigger4(Zombi) DNA MER2_type 1 79 -2652 613 327 118 35 chrX 26017698 26018154 -136581776 - HAL1 LINE L1 -395 2112 1619 22 35 0 0 chrX 26018227 26018256 -136581674 + AT_rich Low_complexity Low_complexity 1 29 0 381 252 29 91 chrX 26018461 26018671 -136581259 - MER58A DNA MER1_type -1 223 27 308 146 156 10 chrX 26018771 26018867 -136581063 + L1MA4 LINE L1 6187 6296 -4 * 1292 249 57 19 chrX 26018860 26019626 -136580304 + L1MEc LINE L1 1577 2268 -3947 833 263 144 36 chrX 26020453 26020966 -136578964 - MLT1G1 LTR MaLR 0 595 4 9110 28 3 1 chrX 26021140 26022273 -136577657 - L1P LINE L1 -2788 3358 2223 189 0 0 0 chrX 26022665 26022686 -136577244 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2125 94 0 4 chrX 26022686 26022962 -136576968 - AluSc SINE Alu -32 277 3 23 94 0 0 chrX 26023138 26023191 -136576739 + AT_rich Low_complexity Low_complexity 1 53 0 4105 139 14 5 chrX 26023606 26024270 -136575660 - L1PA16 LINE L1 -98 6068 5399 900 175 0 7 chrX 26074722 26074876 -136525054 - L1PA16 LINE L1 -1173 4973 4821 1040 141 11 16 chrX 26074878 26075063 -136524867 - L1MA6 LINE L1 -392 5908 5725 1033 298 98 39 chrX 26075128 26075428 -136524502 + L2 LINE L2 2818 3157 -156 1483 165 171 0 chrX 26075428 26075743 -136524187 - MER93b LTR ERV1 0 373 5 1033 298 98 39 chrX 26075743 26075909 -136524021 + L2 LINE L2 3157 3312 -1 21 0 0 0 chrX 26077313 26077334 -136522596 + AT_rich Low_complexity Low_complexity 1 21 0 537 233 0 0 chrX 26077599 26077715 -136522215 - L1PA8A LINE L1 0 6131 6016 259 105 0 0 chrX 26077716 26077754 -136522176 - L1PA10 LINE L1 -116 6052 6015 2390 83 6 3 chrX 26078391 26078703 -136521227 - AluSq SINE Alu 0 313 1 2258 92 0 10 chrX 26079032 26079327 -136520603 + AluSc SINE Alu 1 292 -17 2087 102 0 0 chrX 26082414 26082697 -136517233 - AluSq SINE Alu -30 283 1 256 168 104 144 chrX 26083125 26083250 -136516680 - LTR37B LTR ERV1 -326 142 23 35 41 0 0 chrX 26084149 26084198 -136515732 + AT_rich Low_complexity Low_complexity 1 49 0 251 351 45 0 chrX 26085245 26085356 -136514574 + L2 LINE L2 3152 3267 -5 203 283 203 43 chrX 26086112 26086250 -136513680 - MIR3 SINE MIR -7 201 42 1139 263 75 38 chrX 26086619 26086718 -136513212 + L1ME3A LINE L1 5702 5796 -374 2061 106 10 20 chrX 26086718 26087020 -136512910 - AluSg SINE Alu -11 299 1 1139 263 75 38 chrX 26087020 26087372 -136512558 + L1ME3A LINE L1 5796 6170 0 234 0 0 0 chrX 26087737 26087763 -136512167 + (CA)n Simple_repeat Simple_repeat 2 27 0 188 284 25 86 chrX 26087919 26088081 -136511849 - L2 LINE L2 -274 2998 2847 1835 141 7 43 chrX 26088680 26088984 -136510946 + AluSx SINE Alu 1 293 -19 817 204 6 12 chrX 26089535 26089702 -136510228 + FRAM SINE Alu 1 166 0 502 286 86 40 chrX 26090828 26091071 -136508859 + LTR33 LTR ERVL 1 264 -257 2039 100 7 0 chrX 26091071 26091352 -136508578 + AluSq SINE Alu 18 300 -13 502 286 86 40 chrX 26091352 26091433 -136508497 + LTR33 LTR ERVL 264 340 -181 468 77 0 0 chrX 26091450 26091515 -136508415 + (TG)n Simple_repeat Simple_repeat 2 66 0 2150 231 26 0 chrX 26091702 26092195 -136507735 - L1P LINE L1 -1777 4369 3864 673 292 39 27 chrX 26092379 26092636 -136507294 + MIR SINE MIR 3 262 0 2345 222 20 35 chrX 26092832 26093479 -136506451 + L1ME1 LINE L1 5538 6334 0 3992 147 76 0 chrX 26093754 26093924 -136506006 + HSMAR2 DNA Mariner 1 157 -1145 2187 99 0 3 chrX 26093924 26094217 -136505713 + AluSq SINE Alu 1 292 -21 3992 147 76 0 chrX 26094217 26094747 -136505183 + HSMAR2 DNA Mariner 157 754 -548 5765 83 15 11 chrX 26094753 26095550 -136504380 + L1PA11 LINE L1 5374 6173 -1 2892 137 102 14 chrX 26095550 26096062 -136503868 + HSMAR2 DNA Mariner 744 1300 -2 21 36 0 0 chrX 26098081 26098109 -136501821 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chrX 26098397 26098426 -136501504 + AT_rich Low_complexity Low_complexity 1 29 0 330 154 15 0 chrX 26098442 26098507 -136501423 - L1PB4 LINE L1 -8 6148 6083 225 321 24 77 chrX 26100236 26100404 -136499526 - L2 LINE L2 -518 2796 2638 970 141 32 145 chrX 26100476 26100568 -136499362 + L1MB7 LINE L1 5934 6035 -149 1900 137 89 17 chrX 26100568 26100918 -136499012 - THE1C LTR MaLR 0 375 1 970 141 32 145 chrX 26100918 26101108 -136498822 + L1MB7 LINE L1 6035 6184 0 1984 177 9 0 chrX 26101927 26102272 -136497658 + MER7A DNA MER2_type 1 346 0 2292 74 37 0 chrX 26102608 26102904 -136497026 + AluSc SINE Alu 1 307 -2 232 308 15 0 chrX 26105758 26105823 -136494107 - MIR SINE MIR -147 115 50 731 277 71 9 chrX 26106053 26106277 -136493653 + MIR SINE MIR 6 243 -19 2432 193 35 21 chrX 26106447 26107022 -136492908 - L1MB8 LINE L1 0 6178 5596 218 336 46 30 chrX 26107032 26107163 -136492767 + L2 LINE L2 2620 2752 -562 274 292 0 0 chrX 26107211 26107276 -136492654 - L2 LINE L2 -2 3311 3247 180 0 0 0 chrX 26107917 26107937 -136491993 + (ATTTG)n Simple_repeat Simple_repeat 3 22 0 1279 124 16 0 chrX 26108059 26108253 -136491677 + L1PA8 LINE L1 5972 6168 -4 513 183 77 30 chrX 26108351 26108520 -136491410 + L1MC5 LINE L1 7652 7828 -133 6255 158 9 5 chrX 26108528 26109587 -136490343 - L1MC1 LINE L1 0 6333 5268 243 0 0 0 chrX 26109587 26109614 -136490316 + (TG)n Simple_repeat Simple_repeat 2 28 0 6255 158 9 5 chrX 26109614 26109627 -136490303 - L1MC1 LINE L1 -1065 5268 5257 1888 150 57 59 chrX 26109637 26109945 -136489985 - L1MA8 LINE L1 -6 6285 5977 2385 92 13 0 chrX 26109945 26110250 -136489680 - AluSc SINE Alu 0 309 1 1888 150 57 59 chrX 26110250 26110382 -136489548 - L1MA8 LINE L1 -314 5977 5846 * 2222 201 13 60 chrX 26110379 26110566 -136489364 - L1M3e LINE L1 -6523 507 313 2028 142 35 30 chrX 26110566 26110939 -136488991 - THE1C LTR MaLR 0 375 1 2222 201 13 60 chrX 26110939 26111283 -136488647 - L1M3e LINE L1 -6717 313 1 2691 249 18 19 chrX 26111285 26112076 -136487854 - L1MC1 LINE L1 -870 5276 4487 276 130 0 0 chrX 26113645 26113691 -136486239 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 223 305 0 0 chrX 26113702 26113761 -136486169 + L2 LINE L2 3203 3261 -11 410 325 40 0 chrX 26113792 26113918 -136486012 + MER91C DNA MER1_type 2 132 -8 354 341 0 16 chrX 26113980 26114106 -136485824 + MER5B DNA MER1_type 25 148 -30 273 75 0 0 chrX 26114408 26114448 -136485482 + (CA)n Simple_repeat Simple_repeat 1 40 0 474 291 112 8 chrX 26114448 26114633 -136485297 + MIR SINE MIR 29 232 -30 22 0 0 0 chrX 26114861 26114883 -136485047 + AT_rich Low_complexity Low_complexity 1 22 0 198 367 62 35 chrX 26115125 26115384 -136484546 - L2 LINE L2 -430 2884 2619 228 35 0 0 chrX 26115565 26115594 -136484336 + (CA)n Simple_repeat Simple_repeat 2 30 0 1546 91 0 57 chrX 26116514 26116744 -136483186 - AluY SINE Alu -6 305 89 478 40 122 0 chrX 26116762 26116776 -136483154 - AluY SINE Alu -174 137 126 207 0 0 0 chrX 26116776 26116799 -136483131 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 478 40 122 0 chrX 26116799 26116858 -136483072 - AluY SINE Alu -185 126 55 710 138 9 9 chrX 26117242 26117358 -136482572 + AluSg/x SINE Alu 174 289 -20 301 219 73 10 chrX 26118503 26118599 -136481331 + MER103 DNA DNA 64 165 -1 25 0 0 0 chrX 26119177 26119202 -136480728 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chrX 26121493 26121516 -136478414 + (A)n Simple_repeat Simple_repeat 1 23 0 223 333 16 0 chrX 26121650 26121713 -136478217 - MER5B DNA MER1_type -7 171 108 200 330 33 33 chrX 26121667 26121758 -136478172 + MER5A DNA MER1_type 36 126 -63 * 339 208 255 54 chrX 26122062 26122211 -136477719 - MER5A DNA MER1_type 0 189 11 192 302 81 58 chrX 26123075 26123161 -136476769 - L2 LINE L2 -36 3236 3149 223 312 13 0 chrX 26124222 26124299 -136475631 + MIR SINE MIR 166 243 -19 426 116 14 0 chrX 26124482 26124551 -136475379 + MER41B LTR ERV1 481 550 -85 2015 129 7 0 chrX 26125857 26126165 -136473765 + AluSx SINE Alu 1 310 0 23 33 0 0 chrX 26126687 26126717 -136473213 + AT_rich Low_complexity Low_complexity 1 30 0 1083 160 11 27 chrX 26127184 26127371 -136472559 - AluJo SINE Alu -23 289 106 899 122 0 23 chrX 26127590 26127762 -136472168 + (TCC)n Simple_repeat Simple_repeat 1 168 0 1276 199 18 53 chrX 26127762 26128044 -136471886 - AluJo SINE Alu -19 293 22 487 298 161 19 chrX 26128124 26128329 -136471601 - MIR SINE MIR 0 262 29 853 126 0 0 chrX 26129437 26129556 -136470374 - AluSg/x SINE Alu -17 293 175 203 61 30 0 chrX 26129864 26129897 -136470033 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 693 227 11 17 chrX 26130495 26130671 -136469259 - MER104 DNA Tc2 -5 175 1 251 273 61 0 chrX 26131368 26131434 -136468496 - MIR SINE MIR -2 260 191 2022 177 7 57 chrX 26131447 26131795 -136468135 - L1MD3 LINE L1 0 7995 7674 599 231 25 0 chrX 26131795 26131916 -136468014 - FLAM_A SINE Alu -9 124 1 2022 177 7 57 chrX 26131916 26132020 -136467910 - L1MD3 LINE L1 -321 7674 7566 476 250 181 0 chrX 26132020 26132180 -136467750 - MIR SINE MIR -68 194 6 193 289 0 0 chrX 26132244 26132296 -136467634 + MIR SINE MIR 120 171 -91 784 241 78 13 chrX 26133891 26134123 -136465807 + L2 LINE L2 2354 2600 -714 1335 158 4 39 chrX 26134123 26134382 -136465548 - L1MA7 LINE L1 -146 6145 5896 1578 76 0 5 chrX 26134390 26134587 -136465343 - AluSg/x SINE Alu -22 290 95 4970 96 1 26 chrX 26134587 26135314 -136464616 - L1PA13 LINE L1 -8 6155 5447 494 194 28 0 chrX 26135317 26135425 -136464505 - L1PA13 LINE L1 -1033 5113 5003 1663 67 0 0 chrX 26135764 26136004 -136463926 - AluY SINE Alu 0 341 102 1149 173 40 0 chrX 26136005 26136207 -136463723 - L1M4b LINE L1 -5679 1180 971 * 2652 233 40 51 chrX 26136205 26136888 -136463042 - L1M4b LINE L1 -6183 676 2 372 286 88 29 chrX 26137333 26137504 -136462426 + MIR SINE MIR 34 214 -48 447 323 37 56 chrX 26138178 26138591 -136461339 - L2 LINE L2 -210 3062 2659 378 0 0 0 chrX 26139321 26139363 -136460567 + (CA)n Simple_repeat Simple_repeat 2 43 0 240 191 0 0 chrX 26141475 26141517 -136458413 - MER117 DNA MER1_type -155 42 1 515 269 47 13 chrX 26143488 26143637 -136456293 - MIR SINE MIR -76 186 33 257 295 29 19 chrX 26143751 26143856 -136456074 - MIR SINE MIR -48 214 109 225 0 0 0 chrX 26146303 26146328 -136453602 + (CATTC)n Simple_repeat Simple_repeat 1 25 0 459 92 0 0 chrX 26146462 26146527 -136453403 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 216 221 58 70 chrX 26146798 26146884 -136453046 - L2 LINE L2 -500 2814 2730 2369 110 0 0 chrX 26147015 26147325 -136452605 + AluSg SINE Alu 1 310 0 2010 111 25 38 chrX 26147688 26148003 -136451927 + AluSq SINE Alu 1 311 -2 22 0 0 0 chrX 26148645 26148667 -136451263 + AT_rich Low_complexity Low_complexity 1 22 0 213 348 98 37 chrX 26149331 26149575 -136450355 - L2 LINE L2 -1188 2126 1868 207 148 0 37 chrX 26149705 26149759 -136450171 + (TTTTTG)n Simple_repeat Simple_repeat 4 55 0 1706 184 26 3 chrX 26149796 26150101 -136449829 + AluJb SINE Alu 1 312 0 1648 139 0 97 chrX 26150437 26150614 -136449316 - AluJo SINE Alu -4 298 105 902 128 7 0 chrX 26150614 26150763 -136449167 + (TTTC)n Simple_repeat Simple_repeat 2 151 0 2230 89 0 7 chrX 26150765 26151046 -136448884 - AluSp SINE Alu -32 281 3 1648 139 0 97 chrX 26151046 26151195 -136448735 - AluJo SINE Alu -198 104 1 2234 88 7 3 chrX 26154388 26154685 -136445245 - AluSq SINE Alu -15 298 1 25 65 0 0 chrX 26154838 26154884 -136445046 + AT_rich Low_complexity Low_complexity 1 46 0 702 208 57 6 chrX 26155098 26155257 -136444673 - MIR SINE MIR -25 237 71 533 274 35 97 chrX 26155344 26155683 -136444247 - MER102b DNA MER1_type -12 329 12 342 354 95 36 chrX 26156374 26156679 -136443251 + L3 LINE CR1 1110 1432 -145 2459 73 0 0 chrX 26156827 26157128 -136442802 - AluSc SINE Alu -8 301 1 1657 158 18 18 chrX 26157444 26157728 -136442202 + AluJb SINE Alu 1 284 -28 797 195 0 13 chrX 26157592 26157741 -136442189 + AluJb SINE Alu 151 297 -15 2373 88 10 0 chrX 26158086 26158393 -136441537 + AluSx SINE Alu 1 310 -2 1317 164 31 31 chrX 26158924 26159216 -136440714 - L1MA9 LINE L1 -4 6308 6017 269 200 14 0 chrX 26159424 26159494 -136440436 - LTR66 LTR ERVL -151 459 389 566 191 69 39 chrX 26162092 26162296 -136437634 + MER113 DNA MER1_type? 1 210 -311 2302 134 106 3 chrX 26162818 26163206 -136436724 - MSTA LTR MaLR 0 428 1 582 255 13 27 chrX 26163308 26163457 -136436473 - MIR SINE MIR -20 242 96 2212 101 0 40 chrX 26164168 26164494 -136435436 + AluSq SINE Alu 1 313 0 23 0 0 0 chrX 26164742 26164765 -136435165 + AT_rich Low_complexity Low_complexity 1 23 0 39 0 0 0 chrX 26166382 26166421 -136433509 + AT_rich Low_complexity Low_complexity 1 39 0 34 0 0 0 chrX 26166626 26166660 -136433270 + AT_rich Low_complexity Low_complexity 1 34 0 186 103 0 0 chrX 26168029 26168058 -136431872 + (TTG)n Simple_repeat Simple_repeat 2 30 0 518 244 169 12 chrX 26168225 26168385 -136431545 + MER5A DNA MER1_type 5 189 0 2150 95 0 3 chrX 26168561 26168871 -136431059 + AluSq SINE Alu 1 309 0 202 254 55 36 chrX 26169222 26169277 -136430653 - MIR SINE MIR -171 91 36 25 0 0 0 chrX 26169536 26169561 -136430369 + AT_rich Low_complexity Low_complexity 1 25 0 2296 97 0 0 chrX 26169624 26169924 -136430006 + AluSc SINE Alu 1 300 -9 834 283 109 42 chrX 26169924 26170309 -136429621 - MER57B LTR ERV1 -14 420 10 649 300 4 84 chrX 26170315 26170588 -136429342 + MIR SINE MIR 12 262 0 11573 146 9 8 chrX 26170761 26171346 -136428584 + L1MA3 LINE L1 3203 3786 -2519 2281 79 7 10 chrX 26171346 26171650 -136428280 + AluSq SINE Alu 1 303 -10 11573 146 9 8 chrX 26171650 26172077 -136427853 + L1MA3 LINE L1 3786 4211 -2094 2299 96 3 0 chrX 26172077 26172380 -136427550 + AluSp SINE Alu 1 304 -9 11573 146 9 8 chrX 26172380 26174461 -136425469 + L1MA3 LINE L1 4211 6298 -7 295 341 106 22 chrX 26174472 26174651 -136425279 - MLT1J LTR MaLR -92 419 226 226 333 0 0 chrX 26174735 26174804 -136425126 - MLT1J LTR MaLR -331 180 112 23 33 0 0 chrX 26176128 26176158 -136423772 + AT_rich Low_complexity Low_complexity 1 30 0 1633 254 28 74 chrX 26177650 26178088 -136421842 - L1ME3A LINE L1 -35 6135 5728 2265 75 4 0 chrX 26178088 26178393 -136421537 - AluSp SINE Alu 0 306 1 1633 254 28 74 chrX 26178393 26178532 -136421398 - L1ME3A LINE L1 -442 5728 5584 27 29 0 0 chrX 26179165 26179199 -136420731 + AT_rich Low_complexity Low_complexity 1 34 0 233 258 97 0 chrX 26180599 26180692 -136419238 - L1ME4a LINE L1 -76 6114 6013 26 64 0 0 chrX 26180736 26180783 -136419147 + AT_rich Low_complexity Low_complexity 1 47 0 663 315 123 16 chrX 26181002 26181516 -136418414 - L1ME4a LINE L1 -219 6020 5452 609 279 36 58 chrX 26181577 26181613 -136418317 - L1ME4a LINE L1 -917 5298 5263 2204 108 13 0 chrX 26181613 26181918 -136418012 - AluSx SINE Alu -3 309 1 609 279 36 58 chrX 26181918 26182243 -136417687 - L1ME4a LINE L1 -952 5263 4945 420 288 84 56 chrX 26182269 26182486 -136417444 - MLT1J2 LTR MaLR 0 450 184 2097 95 0 41 chrX 26182486 26182801 -136417129 - AluSg SINE Alu -6 304 3 420 288 84 56 chrX 26182801 26182921 -136417009 - MLT1J2 LTR MaLR -266 184 69 670 303 79 20 chrX 26183125 26183622 -136416308 - L1ME4a LINE L1 -1527 4688 4129 523 295 146 23 chrX 26183680 26184307 -136415623 - L1ME4a LINE L1 -2364 3851 3303 2155 115 6 6 chrX 26184307 26184620 -136415310 - AluSq SINE Alu 0 313 1 523 295 146 23 chrX 26184620 26184957 -136414973 - L1ME4a LINE L1 -2912 3303 2750 370 269 43 92 chrX 26185183 26185645 -136414285 - L1MEc LINE L1 -3774 2441 2046 26 0 0 0 chrX 26185812 26185838 -136414092 + AT_rich Low_complexity Low_complexity 1 26 0 246 335 129 45 chrX 26185928 26186462 -136413468 - L2 LINE L2 -568 2746 2168 196 294 64 0 chrX 26186653 26186762 -136413168 - L2 LINE L2 -1271 2043 1928 600 281 42 35 chrX 26187923 26188183 -136411747 - MIR SINE MIR 0 262 1 265 240 10 21 chrX 26188786 26188882 -136411048 + (TA)n Simple_repeat Simple_repeat 1 95 0 2730 178 46 89 chrX 26189076 26189794 -136410136 + L1MCa LINE L1 1 687 -5739 2586 192 7 9 chrX 26189798 26190356 -136409574 - L1P LINE L1 -959 5187 4631 2427 231 7 5 chrX 26190371 26190965 -136408965 + L1M4 LINE L1 3577 4171 -1975 381 229 0 12 chrX 26190965 26191048 -136408882 - Tigger5 DNA MER2_type 0 2323 2242 359 192 0 26 chrX 26191038 26191116 -136408814 + Tigger5 DNA MER2_type 2242 2317 -6 * 412 244 0 0 chrX 26191118 26191196 -136408734 - Tigger5 DNA MER2_type -2244 79 2 344 264 0 0 chrX 26191196 26191283 -136408647 + L1M4 LINE L1 4171 4257 -1889 868 212 10 26 chrX 26191318 26191545 -136408385 - MLT1D LTR MaLR -327 178 1 21 0 0 0 chrX 26191622 26191643 -136408287 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chrX 26192075 26192103 -136407827 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 351 0 0 0 chrX 26192102 26192141 -136407789 + (CA)n Simple_repeat Simple_repeat 1 39 0 1953 114 0 0 chrX 26192698 26192999 -136406931 - AluSx SINE Alu 0 324 24 1394 182 41 3 chrX 26193412 26193703 -136406227 + MER33 DNA MER1_type 1 302 -22 188 339 68 0 chrX 26194573 26194632 -136405298 + L2 LINE L2 3170 3232 -40 359 288 49 25 chrX 26195627 26195790 -136404140 + MIR SINE MIR 87 253 -9 858 215 16 0 chrX 26196926 26197112 -136402818 - MER5A DNA MER1_type 0 189 1 376 278 40 20 chrX 26197216 26197367 -136402563 + L2 LINE L2 2192 2345 -969 2125 106 0 23 chrX 26197370 26197671 -136402259 + AluSg1 SINE Alu 1 294 -15 535 225 56 6 chrX 26197742 26197902 -136402028 + L1MC4 LINE L1 7244 7411 -631 423 330 39 80 chrX 26198089 26198425 -136401505 + L2 LINE L2 2904 3225 -47 219 69 0 0 chrX 26198447 26198476 -136401454 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 2356 77 3 0 chrX 26198732 26199030 -136400900 - AluSp SINE Alu -9 304 6 2591 52 0 0 chrX 26199281 26199586 -136400344 - AluY SINE Alu -6 305 1 244 294 47 12 chrX 26201337 26201422 -136398508 - MER5A DNA MER1_type 0 189 91 231 244 0 0 chrX 26201418 26201459 -136398471 + MER5A DNA MER1_type 149 189 0 * 554 295 22 16 chrX 26201733 26201916 -136398014 + MER46C DNA MER2_type 138 321 -17 1848 129 0 103 chrX 26201945 26202333 -136397597 + MER7A DNA MER2_type 1 346 0 4598 160 13 30 chrX 26203196 26204095 -136395835 - L1MC2 LINE L1 -10 6334 5451 577 238 64 53 chrX 26204501 26204783 -136395147 - L1MC5 LINE L1 -50 7911 7627 701 236 26 52 chrX 26204800 26205033 -136394897 - L1MC5 LINE L1 -393 7568 7342 182 359 28 38 chrX 26205205 26205311 -136394619 - MIR3 SINE MIR -103 105 1 1955 136 0 7 chrX 26205423 26205729 -136394201 - AluSq SINE Alu 0 304 1 2315 96 3 0 chrX 26205817 26206119 -136393811 - AluSp SINE Alu -10 303 1 723 233 7 7 chrX 26206207 26206353 -136393577 - FRAM SINE Alu -30 146 1 400 328 64 23 chrX 26206353 26206524 -136393406 + MIR SINE MIR 77 254 -8 186 273 0 18 chrX 26206550 26206605 -136393325 - MIR SINE MIR -130 132 79 312 102 0 0 chrX 26206932 26206981 -136392949 + (CA)n Simple_repeat Simple_repeat 2 50 0 2282 97 0 28 chrX 26208178 26208499 -136391431 + AluSx SINE Alu 1 312 0 318 358 45 0 chrX 26209228 26209404 -136390526 - MLT1I LTR MaLR 0 409 226 2361 144 53 10 chrX 26209600 26210011 -136389919 - MSTB1 LTR MaLR 0 432 4 1843 199 40 0 chrX 26210298 26210649 -136389281 - MLT1A1 LTR MaLR 0 365 1 331 301 135 0 chrX 26210679 26210812 -136389118 - MIR SINE MIR 0 262 112 26 64 0 0 chrX 26211871 26211918 -136388012 + AT_rich Low_complexity Low_complexity 1 47 0 1867 219 31 11 chrX 26211929 26212382 -136387548 + L1MC4a LINE L1 7342 7803 -5 2151 88 27 20 chrX 26212391 26212685 -136387245 - AluSx SINE Alu -16 296 1 25 0 0 0 chrX 26212747 26212772 -136387158 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrX 26212871 26212895 -136387035 + AT_rich Low_complexity Low_complexity 1 24 0 2871 176 64 4 chrX 26213079 26213596 -136386334 + MER44D DNA MER2_type 1 603 -2 2385 107 0 0 chrX 26214013 26214323 -136385607 + AluSq SINE Alu 1 310 -3 2253 106 0 7 chrX 26214420 26214721 -136385209 - AluSx SINE Alu -13 299 1 2379 271 76 32 chrX 26215146 26216230 -136383700 + L2 LINE L2 2095 3237 -76 198 256 17 8 chrX 26217745 26217862 -136382068 + (TA)n Simple_repeat Simple_repeat 1 118 0 21 36 0 0 chrX 26218917 26218945 -136380985 + AT_rich Low_complexity Low_complexity 1 28 0 238 290 29 0 chrX 26219312 26219381 -136380549 - MIR SINE MIR -91 117 47 325 302 26 57 chrX 26219585 26219777 -136380153 + MIR SINE MIR 3 188 -74 335 290 56 0 chrX 26219838 26219945 -136379985 - L2 LINE L2 -10 3303 3191 187 348 44 63 chrX 26220276 26220334 -136379596 - MIR SINE MIR -79 183 125 2507 78 0 0 chrX 26220334 26220643 -136379287 + AluSg SINE Alu 1 309 -1 187 348 44 63 chrX 26220643 26220742 -136379188 - MIR SINE MIR -137 125 29 195 42 0 0 chrX 26220828 26220852 -136379078 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1312 333 19 2 chrX 26221140 26221554 -136378376 - LTR16C LTR ERVL -2 489 69 2521 107 6 11 chrX 26221655 26222021 -136377909 - THE1B LTR MaLR 0 364 1 2287 196 34 40 chrX 26222594 26223095 -136376835 - MLT1D LTR MaLR -7 498 1 2307 92 7 0 chrX 26223950 26224243 -136375687 + AluSx SINE Alu 1 295 -17 263 272 117 10 chrX 26224559 26224662 -136375268 - MIR SINE MIR -72 190 77 2189 102 19 32 chrX 26224688 26225002 -136374928 - AluSq SINE Alu -1 312 3 44 99 0 0 chrX 26225589 26225731 -136374199 + AT_rich Low_complexity Low_complexity 1 142 0 295 317 10 10 chrX 26225786 26225887 -136374043 - MIR SINE MIR -131 131 31 1001 336 28 7 chrX 26226610 26227032 -136372898 - L2 LINE L2 -2440 874 444 532 305 65 5 chrX 26227342 26227542 -136372388 + MIR SINE MIR 51 262 0 1994 119 3 20 chrX 26228068 26228370 -136371560 - AluSx SINE Alu -13 299 3 434 132 13 0 chrX 26228603 26228679 -136371251 + CT-rich Low_complexity Low_complexity 2 78 0 650 119 0 0 chrX 26228682 26228783 -136371147 - AluSp/q SINE Alu -3 310 210 22 0 0 0 chrX 26228830 26228852 -136371078 + AT_rich Low_complexity Low_complexity 1 22 0 2077 97 57 0 chrX 26229424 26229703 -136370227 - AluSp SINE Alu -18 295 1 22 56 0 0 chrX 26229988 26230024 -136369906 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chrX 26230071 26230092 -136369838 + AT_rich Low_complexity Low_complexity 1 21 0 374 324 35 7 chrX 26230301 26230446 -136369484 - L2 LINE L2 -1 3312 3164 2198 86 3 23 chrX 26230464 26230766 -136369164 + AluSx SINE Alu 1 296 -16 5429 48 1 0 chrX 26231401 26232090 -136367840 + L1PA8 LINE L1 5494 6183 0 303 263 46 23 chrX 26232137 26232312 -136367618 - Charlie7 DNA MER1_type 0 2612 2434 2413 87 0 3 chrX 26232484 26232795 -136367135 + AluSg SINE Alu 1 310 0 492 204 0 29 chrX 26232983 26233086 -136366844 - MER5A DNA MER1_type -81 108 9 201 302 125 10 chrX 26233228 26233324 -136366606 - L2 LINE L2 -643 2671 2565 268 255 99 43 chrX 26233916 26234057 -136365873 + L2 LINE L2 3159 3307 -6 201 267 0 0 chrX 26234101 26234146 -136365784 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 252 122 0 0 chrX 26234491 26234532 -136365398 + (TG)n Simple_repeat Simple_repeat 2 42 0 2252 118 0 6 chrX 26234729 26235044 -136364886 + AluSq SINE Alu 1 313 0 352 360 45 11 chrX 26235224 26235402 -136364528 - MIR3 SINE MIR -6 202 19 239 337 97 63 chrX 26236128 26236863 -136363067 + L2 LINE L2 2525 3298 -15 229 146 0 36 chrX 26237003 26237058 -136362872 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 2768 146 19 10 chrX 26237744 26238258 -136361672 - L1MA6 LINE L1 0 6300 5782 325 139 30 30 chrX 26238274 26238375 -136361555 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 575 182 0 51 chrX 26238390 26238703 -136361227 + (TATATG)n Simple_repeat Simple_repeat 1 297 0 1753 97 35 0 chrX 26238726 26238984 -136360946 - L1MA6 LINE L1 -507 5793 5527 25 0 0 0 chrX 26239585 26239610 -136360320 + AT_rich Low_complexity Low_complexity 1 25 0 2282 86 31 0 chrX 26240687 26240978 -136358952 - AluSx SINE Alu -10 302 3 609 241 45 0 chrX 26241978 26242111 -136357819 + MER5A DNA MER1_type 1 139 -50 326 276 98 18 chrX 26242123 26242286 -136357644 - L1MA9 LINE L1 -38 6274 6099 240 139 0 0 chrX 26242286 26242322 -136357608 + MER5A DNA MER1_type 139 174 -15 251 301 19 19 chrX 26242749 26242852 -136357078 - MER5B DNA MER1_type -2 176 74 2251 78 3 14 chrX 26243618 26243913 -136356017 - AluSp SINE Alu -18 295 4 2457 71 0 3 chrX 26244486 26244795 -136355135 + AluY SINE Alu 3 310 -1 2324 108 0 3 chrX 26245257 26245563 -136354367 + AluSg SINE Alu 1 305 -5 856 201 5 57 chrX 26245657 26245778 -136354152 - MER5A DNA MER1_type -1 188 79 2076 66 0 52 chrX 26245778 26246066 -136353864 - AluY SINE Alu -4 307 35 856 201 5 57 chrX 26246066 26246138 -136353792 - MER5A DNA MER1_type -110 79 5 8297 43 0 1 chrX 26247291 26249081 -136350849 - L1PA6 LINE L1 -4 6150 4361 680 194 133 41 chrX 26249140 26249336 -136350594 + MLT1D LTR MaLR 1 214 -291 523 198 198 0 chrX 26249523 26249644 -136350286 - MER5A DNA MER1_type 0 189 45 26 0 0 0 chrX 26249973 26249999 -136349931 + AT_rich Low_complexity Low_complexity 1 26 0 2181 115 0 0 chrX 26250061 26250369 -136349561 - AluSq SINE Alu 0 308 1 430 274 35 20 chrX 26250799 26250948 -136348982 + MIR SINE MIR 67 218 -44 435 283 42 8 chrX 26251261 26251381 -136348549 - L2 LINE L2 -4 3309 3186 1429 174 31 79 chrX 26251607 26251924 -136348006 + MER21B LTR ERV1 13 314 -549 749 319 40 35 chrX 26252041 26252391 -136347539 - MER20B DNA MER1_type -314 469 115 2226 149 144 7 chrX 26252391 26252835 -136347095 + MLT1D LTR MaLR 1 505 0 749 319 40 35 chrX 26252835 26252935 -136346995 - MER20B DNA MER1_type -668 115 17 230 389 78 32 chrX 26252945 26253354 -136346576 + L2 LINE L2 2550 2977 -337 180 0 0 0 chrX 26253374 26253394 -136346536 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 2086 129 0 0 chrX 26253399 26253686 -136346244 - AluSq SINE Alu -26 287 1 242 354 41 14 chrX 26253870 26254017 -136345913 + L2 LINE L2 3162 3312 -1 2060 131 0 0 chrX 26254192 26254489 -136345441 - AluSx SINE Alu -11 301 5 21 0 0 0 chrX 26254819 26254840 -136345090 + AT_rich Low_complexity Low_complexity 1 21 0 667 320 54 0 chrX 26255018 26255240 -136344690 + MIR SINE MIR 25 258 -4 1776 90 60 8 chrX 26256564 26256830 -136343100 + L1PA11 LINE L1 5893 6172 -2 1313 269 97 7 chrX 26256978 26257402 -136342528 - LTR40b LTR ERVL 0 462 1 2207 105 7 0 chrX 26258278 26258572 -136341358 - AluSg SINE Alu -11 299 4 349 327 96 40 chrX 26258905 26259104 -136340826 + MIR SINE MIR 20 229 -33 677 292 69 4 chrX 26259652 26259885 -136340045 + MIR SINE MIR 13 260 -2 22 56 0 0 chrX 26260523 26260559 -136339371 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chrX 26260919 26260949 -136338981 + AT_rich Low_complexity Low_complexity 1 30 0 1048 252 30 27 chrX 26263316 26263645 -136336285 + L1MD2 LINE L1 6012 6341 -18 292 320 33 40 chrX 26264142 26264292 -136335638 - L2 LINE L2 -3 3310 3162 270 300 108 31 chrX 26264606 26264736 -136335194 - MIR3 SINE MIR -39 169 30 197 205 60 133 chrX 26264841 26264924 -136335006 - L2 LINE L2 -9 3263 3187 2403 76 0 3 chrX 26265250 26265553 -136334377 - AluSx SINE Alu -10 302 1 220 163 47 0 chrX 26266529 26266572 -136333358 + (CTATA)n Simple_repeat Simple_repeat 4 48 0 2382 90 0 0 chrX 26267400 26267701 -136332229 - AluSp SINE Alu -12 301 1 605 292 107 52 chrX 26267719 26267977 -136331953 + L3 LINE CR1 625 910 -667 2241 117 3 0 chrX 26267977 26268286 -136331644 - AluSg SINE Alu 0 310 1 605 292 107 52 chrX 26268286 26268390 -136331540 + L3 LINE CR1 910 1007 -570 253 282 165 59 chrX 26268400 26268570 -136331360 - MER5A DNA MER1_type 0 189 2 2005 133 36 21 chrX 26269145 26269476 -136330454 - MER1B DNA MER1_type -1 336 1 1609 70 0 5 chrX 26270513 26270728 -136329202 - L1PA13 LINE L1 0 6163 5950 39 38 0 38 chrX 26270966 26271045 -136328885 + AT_rich Low_complexity Low_complexity 1 76 0 2337 76 0 10 chrX 26271386 26271687 -136328243 - AluSp SINE Alu -15 298 1 672 254 51 30 chrX 26271745 26271795 -136328135 - MER67D LTR ERV1 0 514 467 5778 128 12 1 chrX 26271795 26272720 -136327210 + L1PA15 LINE L1 5229 6163 -2 672 254 51 30 chrX 26272720 26272962 -136326968 - MER67D LTR ERV1 -47 467 215 5233 130 22 61 chrX 26272962 26273173 -136326757 - L1MA4 LINE L1 -8 6292 6074 1965 78 8 0 chrX 26273173 26273415 -136326515 + AluSp SINE Alu 43 286 -27 351 0 0 0 chrX 26273415 26273454 -136326476 + (TA)n Simple_repeat Simple_repeat 1 39 0 5233 130 22 61 chrX 26273454 26274273 -136325657 - L1MA4 LINE L1 -224 6076 5301 363 172 86 0 chrX 26274416 26274509 -136325421 - L1MA4 LINE L1 -865 5281 5181 1195 236 110 9 chrX 26274509 26274836 -136325094 - MER67B LTR ERV1 -301 360 1 457 147 13 0 chrX 26274840 26274915 -136325015 - MER31B LTR ERV1 -390 76 1 696 309 51 0 chrX 26275184 26275401 -136324529 + MIR SINE MIR 29 256 -6 2141 97 0 34 chrX 26275404 26275735 -136324195 - AluSg SINE Alu 0 321 1 2298 62 0 0 chrX 26278122 26278398 -136321532 + AluY SINE Alu 1 276 -35 261 0 0 0 chrX 26278401 26278430 -136321500 + (TAA)n Simple_repeat Simple_repeat 2 30 0 308 333 11 0 chrX 26278620 26278754 -136321176 - MIR SINE MIR -63 145 20 245 254 18 0 chrX 26279236 26279291 -136320639 - MER91A DNA MER1_type -136 60 5 493 310 45 19 chrX 26279299 26279581 -136320349 - L1P4 LINE L1 -364 5797 5508 360 94 0 0 chrX 26280782 26280835 -136319095 + (GA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chrX 26280867 26280888 -136319042 + AT_rich Low_complexity Low_complexity 1 21 0 1550 308 98 34 chrX 26281525 26281914 -136318016 + L2 LINE L2 2094 2456 -857 2206 148 13 80 chrX 26281914 26282009 -136317921 - Tigger2a DNA MER2_type -2274 434 334 2238 106 0 0 chrX 26282009 26282301 -136317629 - AluSx SINE Alu -20 292 1 2206 148 13 80 chrX 26282301 26282670 -136317260 - Tigger2a DNA MER2_type -2374 334 1 1550 308 98 34 chrX 26282670 26282690 -136317240 + L2 LINE L2 2456 2473 -840 2351 90 3 0 chrX 26282690 26282990 -136316940 - AluSp SINE Alu -12 301 1 1550 308 98 34 chrX 26282990 26283733 -136316197 + L2 LINE L2 2473 3313 0 594 262 45 24 chrX 26283929 26284219 -136315711 + L1MC5 LINE L1 7613 7908 -53 23 78 0 0 chrX 26284673 26284724 -136315206 + AT_rich Low_complexity Low_complexity 1 51 0 2283 72 27 10 chrX 26284758 26285050 -136314880 + AluSx SINE Alu 1 297 -15 1949 156 0 16 chrX 26285873 26286187 -136313743 - AluJb SINE Alu -3 309 1 633 289 31 18 chrX 26286418 26286646 -136313284 - LTR40b LTR ERVL -39 423 193 387 245 10 10 chrX 26286897 26286999 -136312931 + MER112 DNA MER1_type 159 260 0 192 343 0 27 chrX 26287021 26287094 -136312836 - L2 LINE L2 -4 3268 3198 198 0 0 0 chrX 26287449 26287471 -136312459 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 369 0 0 0 chrX 26287470 26287511 -136312419 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 376 112 0 chrX 26288807 26288932 -136310998 - MIR3 SINE MIR -23 185 47 275 276 40 0 chrX 26289001 26289077 -136310853 - L2 LINE L2 -8 3305 3227 453 388 39 12 chrX 26289262 26289520 -136310410 + L2 LINE L2 2594 2858 -456 556 260 0 8 chrX 26290470 26290597 -136309333 - MER5B DNA MER1_type 0 178 53 1310 127 9 38 chrX 26290599 26290811 -136309119 - AluSg/x SINE Alu -7 305 100 546 16 0 0 chrX 26291303 26291366 -136308564 + (CA)n Simple_repeat Simple_repeat 2 64 0 2258 76 10 26 chrX 26291423 26291727 -136308203 + AluSg SINE Alu 1 299 -11 301 203 40 14 chrX 26291856 26291930 -136308000 + MARNA DNA Mariner 320 395 -191 354 283 71 9 chrX 26292066 26292179 -136307751 + L2 LINE L2 3190 3309 -4 1044 244 72 26 chrX 26292978 26293240 -136306690 + Charlie4a DNA MER1_type 76 363 -1598 2267 105 0 0 chrX 26293240 26293535 -136306395 - AluSg SINE Alu -15 295 1 1044 244 72 26 chrX 26293535 26293661 -136306269 + Charlie4a DNA MER1_type 363 482 -26 326 260 226 34 chrX 26295096 26295185 -136304745 - MER5A DNA MER1_type 0 189 118 2309 163 66 42 chrX 26295185 26295687 -136304243 - MER67D LTR ERV1 0 514 1 326 260 226 34 chrX 26295687 26295743 -136304187 - MER5A DNA MER1_type -71 118 16 2080 99 44 10 chrX 26296124 26296418 -136303512 - AluSq SINE Alu 0 313 10 24 53 0 0 chrX 26297357 26297395 -136302535 + AT_rich Low_complexity Low_complexity 1 38 0 219 333 33 0 chrX 26297597 26297687 -136302243 - MIR SINE MIR -167 95 3 429 70 0 0 chrX 26297860 26297917 -136302013 + (CA)n Simple_repeat Simple_repeat 2 58 0 369 0 0 0 chrX 26298025 26298066 -136301864 + (TG)n Simple_repeat Simple_repeat 1 41 0 2207 93 0 0 chrX 26298066 26298345 -136301585 - AluSg SINE Alu -31 279 1 391 250 23 45 chrX 26298366 26298542 -136301388 - L1MC5 LINE L1 -438 7523 7352 21 0 0 0 chrX 26299087 26299108 -136300822 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chrX 26300197 26300228 -136299702 + (A)n Simple_repeat Simple_repeat 1 31 0 214 365 120 24 chrX 26301314 26301481 -136298449 - MER5A DNA MER1_type -6 183 1 25 102 0 0 chrX 26301818 26301906 -136298024 + AT_rich Low_complexity Low_complexity 1 88 0 2149 124 0 9 chrX 26302476 26302791 -136297139 - AluSx SINE Alu 0 312 1 2126 208 36 72 chrX 26303259 26303900 -136296030 + MLT1E1 LTR MaLR 1 518 -37 309 122 20 0 chrX 26303947 26303996 -136295934 + MLT1E1 LTR MaLR 542 591 -2 223 304 64 48 chrX 26303999 26304124 -136295806 + L2 LINE L2 2589 2715 -599 219 229 110 59 chrX 26304149 26304267 -136295663 + L2 LINE L2 3190 3313 0 337 347 48 8 chrX 26304358 26304606 -136295324 + MIR SINE MIR 5 262 0 224 275 82 45 chrX 26304692 26304847 -136295083 + MIR SINE MIR 25 181 -62 2356 55 9 61 chrX 26306194 26306561 -136293369 - AluY SINE Alu 0 350 1 25 51 0 0 chrX 26309018 26309057 -136290873 + AT_rich Low_complexity Low_complexity 1 39 0 1720 200 73 75 chrX 26309128 26309305 -136290625 - MLT1D LTR MaLR 0 505 329 1665 75 26 18 chrX 26309305 26309533 -136290397 - MER30 DNA MER1_type 0 230 1 1720 200 73 75 chrX 26309533 26309861 -136290069 - MLT1D LTR MaLR -176 329 1 294 176 0 0 chrX 26309867 26309917 -136290013 + (TA)n Simple_repeat Simple_repeat 1 53 -15 2475 77 0 0 chrX 26309917 26310227 -136289703 - AluSx SINE Alu -2 310 1 294 176 0 0 chrX 26310227 26310244 -136289686 + (TA)n Simple_repeat Simple_repeat 52 68 0 292 357 50 21 chrX 26310979 26311175 -136288755 + MIR3 SINE MIR 6 208 0 222 295 34 67 chrX 26311607 26311756 -136288174 - MIR3 SINE MIR -7 201 58 302 281 44 56 chrX 26311886 26312107 -136287823 - MIR SINE MIR -2 260 2 230 262 16 16 chrX 26312235 26312296 -136287634 - L2 LINE L2 -2 3311 3251 529 288 73 30 chrX 26312378 26312625 -136287305 - MIR SINE MIR -2 260 4 325 252 142 25 chrX 26313078 26313200 -136286730 - MER88 LTR ERVL -250 214 102 250 243 14 29 chrX 26313143 26313213 -136286717 + MER74B LTR ERVL 482 550 -72 * 247 266 16 0 chrX 26313616 26313680 -136286250 + CT-rich Low_complexity Low_complexity 4 68 0 6863 44 3 0 chrX 26314504 26315575 -136284355 - L1PA7 LINE L1 -1 6153 5047 225 0 0 0 chrX 26315843 26315868 -136284062 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chrX 26317128 26317151 -136282779 + AT_rich Low_complexity Low_complexity 1 23 0 2214 101 7 0 chrX 26317196 26317483 -136282447 + AluSg SINE Alu 1 289 -21 1989 136 0 23 chrX 26317826 26318134 -136281796 + AluSx SINE Alu 1 301 -11 524 293 147 51 chrX 26318165 26318771 -136281159 + L1MC4a LINE L1 5268 5933 -1875 301 236 16 118 chrX 26320948 26321075 -136278855 - L2 LINE L2 0 3313 3200 247 289 12 0 chrX 26321156 26321239 -136278691 + (TA)n Simple_repeat Simple_repeat 1 84 0 336 323 115 22 chrX 26321249 26321475 -136278455 - L2 LINE L2 -250 3063 2817 3415 32 0 0 chrX 26321568 26321971 -136277959 + L1PA3 LINE L1 5753 6155 0 412 262 16 16 chrX 26323209 26323335 -136276595 - MIR SINE MIR -33 229 104 236 102 51 17 chrX 26324145 26324204 -136275726 + GA-rich Low_complexity Low_complexity 1 61 0 357 24 0 0 chrX 26324816 26324858 -136275072 + (TG)n Simple_repeat Simple_repeat 1 42 0 4560 146 5 5 chrX 26325149 26325898 -136274032 - L1PA16 LINE L1 -11 6155 5407 22 0 0 0 chrX 26325949 26325971 -136273959 + AT_rich Low_complexity Low_complexity 1 22 0 209 300 100 0 chrX 26326243 26326303 -136273627 + MIR SINE MIR 116 181 -81 207 139 0 0 chrX 26326405 26326441 -136273489 + (ATG)n Simple_repeat Simple_repeat 1 36 0 297 296 118 12 chrX 26326441 26326610 -136273320 - MIR SINE MIR -1 261 75 346 107 0 0 chrX 26327912 26327968 -136271962 + L1MA4A LINE L1 6234 6289 -14 23 54 0 0 chrX 26329070 26329107 -136270823 + AT_rich Low_complexity Low_complexity 1 37 0 2322 135 22 0 chrX 26329970 26330326 -136269604 - THE1B LTR MaLR 0 364 1 386 174 47 41 chrX 26330566 26330738 -136269192 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 227 357 50 0 chrX 26331093 26331233 -136268697 + L2 LINE L2 2342 2488 -826 443 351 71 19 chrX 26331400 26331722 -136268208 + L2 LINE L2 2938 3276 -37 345 279 285 0 chrX 26331739 26331911 -136268019 + MIR SINE MIR 42 262 0 2070 122 7 0 chrX 26332075 26332371 -136267559 + AluSp SINE Alu 1 298 -15 233 250 52 73 chrX 26332811 26332907 -136267023 + L2 LINE L2 3134 3227 -86 255 152 0 0 chrX 26333524 26333570 -136266360 + CT-rich Low_complexity Low_complexity 1 46 0 45 62 0 0 chrX 26334277 26334357 -136265573 + AT_rich Low_complexity Low_complexity 1 80 0 324 200 20 50 chrX 26334502 26334602 -136265328 - L1M4 LINE L1 -2892 3254 3158 2201 96 3 3 chrX 26334603 26334905 -136265025 - AluSq SINE Alu -11 302 1 29 84 0 0 chrX 26334948 26335019 -136264911 + AT_rich Low_complexity Low_complexity 1 71 0 3231 27 0 0 chrX 26335166 26335541 -136264389 - L1PA3 LINE L1 -3 6152 5778 3527 24 10 0 chrX 26335550 26335963 -136263967 + L1PA3 LINE L1 5384 5800 -355 198 143 0 0 chrX 26337153 26337188 -136262742 + (CA)n Simple_repeat Simple_repeat 2 36 0 233 218 55 18 chrX 26338448 26338503 -136261427 + L2 LINE L2 3207 3263 -9 382 290 30 0 chrX 26339334 26339434 -136260496 + L2 LINE L2 2589 2691 -623 1889 218 59 21 chrX 26339451 26339975 -136259955 - L1ME1 LINE L1 -5 6161 5618 1708 253 61 19 chrX 26339972 26340546 -136259384 - L1ME1 LINE L1 -995 5151 4554 * 6293 110 6 57 chrX 26340549 26342006 -136257924 - L1PA15 LINE L1 -4 6161 4742 5614 205 37 8 chrX 26342095 26343489 -136256441 - L1PA13 LINE L1 -4245 2552 1112 583 107 0 74 chrX 26343579 26343700 -136256230 + L1MA9 LINE L1 6201 6312 0 384 372 106 12 chrX 26344457 26344798 -136255132 + L2 LINE L2 2361 2733 -581 872 194 16 37 chrX 26344829 26345020 -136254910 + MER5A DNA MER1_type 1 187 -2 200 267 0 0 chrX 26346281 26346326 -136253604 - L2 LINE L2 -4 3309 3265 756 214 0 0 chrX 26346375 26346506 -136253424 - FLAM_A SINE Alu -1 132 2 264 161 54 0 chrX 26346515 26346608 -136253322 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 2028 108 30 59 chrX 26347380 26347751 -136252179 - MER46B DNA MER2_type 0 236 2 305 267 22 59 chrX 26348606 26348741 -136251189 + L1MC4 LINE L1 7824 7953 -89 2303 89 3 0 chrX 26348849 26349142 -136250788 + AluSg SINE Alu 1 294 -16 204 97 0 0 chrX 26350277 26350308 -136249622 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 655 278 156 7 chrX 26350334 26350629 -136249301 - L2 LINE L2 -43 3270 2932 188 191 0 24 chrX 26350672 26350714 -136249216 + MIR SINE MIR 222 262 0 757 207 70 115 chrX 26351374 26351493 -136248437 - LTR41 LTR ERVL -6 767 644 1678 178 26 59 chrX 26351493 26351880 -136248050 - MLT1A2 LTR MaLR 0 374 1 757 207 70 115 chrX 26351880 26352074 -136247856 - LTR41 LTR ERVL -129 644 468 467 250 189 0 chrX 26552144 26552292 -136047638 + L2 LINE L2 2190 2365 -949 780 353 74 18 chrX 26552299 26552835 -136047095 + L2 LINE L2 2475 3042 -271 584 343 53 4 chrX 26552834 26553079 -136046851 + MIR SINE MIR 6 262 0 * 35 24 0 0 chrX 26553178 26553220 -136046710 + AT_rich Low_complexity Low_complexity 1 42 0 599 234 8 0 chrX 26553257 26553381 -136046549 + L2 LINE L2 3186 3310 -3 2486 68 0 0 chrX 26553784 26554095 -136045835 + AluY SINE Alu 1 311 0 25 0 0 0 chrX 26554199 26554224 -136045706 + AT_rich Low_complexity Low_complexity 1 25 0 2331 71 0 43 chrX 26555175 26555500 -136044430 + AluY SINE Alu 1 311 0 26 52 0 17 chrX 26555531 26555545 -136044385 + AT_rich Low_complexity Low_complexity 1 14 -43 2078 69 3 100 chrX 26555545 26555865 -136044065 + AluSq SINE Alu 1 289 -24 26 52 0 17 chrX 26555865 26555908 -136044022 + AT_rich Low_complexity Low_complexity 14 57 0 1965 162 31 11 chrX 26556328 26556680 -136043250 - MLT1A1 LTR MaLR -6 359 1 2488 63 7 0 chrX 26557288 26557590 -136042340 - AluSp SINE Alu -9 304 1 1904 215 26 21 chrX 26557864 26558329 -136041601 + MLT1C LTR MaLR 1 467 0 1883 178 14 17 chrX 26558586 26558935 -136040995 + MER7A DNA MER2_type 1 346 0 334 313 140 44 chrX 26559451 26559952 -136039978 + L1 LINE L1 3176 3724 -2422 2263 143 34 31 chrX 26560084 26560502 -136039428 - MSTB1 LTR MaLR -13 419 1 313 354 69 22 chrX 26560543 26560820 -136039110 - L1 LINE L1 -1446 4700 4411 226 200 40 0 chrX 26561122 26561172 -136038758 - L1 LINE L1 -3429 2717 2666 3859 140 10 2 chrX 26561177 26561791 -136038139 + L1PB4 LINE L1 5436 6054 -102 8940 101 19 3 chrX 26561800 26563033 -136036897 + HSMAR1 DNA Mariner 4 1255 -32 365 119 0 45 chrX 26563035 26563102 -136036828 + L1PA16 LINE L1 6087 6150 -16 520 298 148 45 chrX 26563178 26563597 -136036333 - L1 LINE L1 -3572 2574 2113 1578 199 115 21 chrX 26563889 26564367 -136035563 + Charlie1b DNA MER1_type 1 523 0 1125 77 26 0 chrX 26564939 26565094 -136034836 - L1MA3 LINE L1 -1 6304 6146 21 0 0 0 chrX 26565698 26565719 -136034211 + AT_rich Low_complexity Low_complexity 1 21 0 231 310 20 42 chrX 26566069 26566186 -136033744 + MIR SINE MIR 22 141 -67 31 58 0 0 chrX 26566527 26566579 -136033351 + AT_rich Low_complexity Low_complexity 1 52 0 421 171 0 0 chrX 26566728 26566798 -136033132 + AluJb SINE Alu 1 70 -242 1469 143 0 9 chrX 26566836 26567067 -136032863 + AluJb SINE Alu 73 301 -11 420 254 15 62 chrX 26567319 26567449 -136032481 - L2 LINE L2 0 3313 3190 5290 112 45 2 chrX 26568158 26568961 -136030969 - L1PA14 LINE L1 0 6161 5325 2244 72 7 0 chrX 26568969 26569247 -136030683 - AluSp SINE Alu -16 297 18 1874 73 44 0 chrX 26569247 26569522 -136030408 + L1MA5 LINE L1 6012 6298 -2 2630 175 13 0 chrX 26569555 26570029 -136029901 + L1MA8 LINE L1 5591 6070 -221 2155 106 7 3 chrX 26570066 26570359 -136029571 + AluSq SINE Alu 1 294 -19 380 324 35 12 chrX 26570578 26570751 -136029179 + MER69A DNA AcHobo 1 177 0 800 259 10 0 chrX 26571701 26571894 -136028036 - L2 LINE L2 -983 2331 2137 23 0 0 0 chrX 26572623 26572646 -136027284 + AT_rich Low_complexity Low_complexity 1 23 0 2280 146 26 81 chrX 26574524 26575031 -136024899 - L1MB2 LINE L1 0 6171 5693 264 301 57 67 chrX 26575036 26575053 -136024877 + MER20 DNA MER1_type 7 23 -196 2529 70 21 49 chrX 26575053 26575439 -136024491 + THE1C LTR MaLR 1 375 0 264 301 57 67 chrX 26575439 26575630 -136024300 + MER20 DNA MER1_type 23 213 -6 568 248 80 118 chrX 26575834 26576129 -136023801 + MER34 LTR ERV1 1 306 -236 2122 136 128 10 chrX 26576129 26576512 -136023418 + MSTA LTR MaLR 1 428 0 568 248 80 118 chrX 26576512 26576670 -136023260 + MER34 LTR ERV1 306 432 -110 2285 98 3 0 chrX 26576670 26576967 -136022963 + AluSq SINE Alu 1 298 -15 568 248 80 118 chrX 26576967 26577072 -136022858 + MER34 LTR ERV1 432 539 -3 303 250 65 28 chrX 26577437 26577545 -136022385 - L1ME3A LINE L1 -214 5956 5845 1272 168 135 51 chrX 26577739 26577917 -136022013 + LTR37A LTR ERV1 1 163 -263 396 0 0 0 chrX 26577917 26577961 -136021969 + (CA)n Simple_repeat Simple_repeat 2 45 0 1272 168 135 51 chrX 26577961 26578175 -136021755 + LTR37A LTR ERV1 163 426 0 216 97 0 0 chrX 26578636 26578667 -136021263 + (CA)n Simple_repeat Simple_repeat 2 32 0 47 73 0 0 chrX 26579255 26579351 -136020579 + AT_rich Low_complexity Low_complexity 1 96 0 2259 113 0 3 chrX 26579403 26579714 -136020216 - AluSq SINE Alu -3 310 1 37 62 0 0 chrX 26579759 26579824 -136020106 + AT_rich Low_complexity Low_complexity 1 65 0 13809 44 2 5 chrX 26580085 26582573 -136017357 - L1PA5 LINE L1 -3 6151 3666 450 175 3 37 chrX 26582843 26582968 -136016962 + L1M3 LINE L1 5236 5359 -787 269 316 13 0 chrX 26583031 26583110 -136016820 + MER82 DNA MER2_type 48 127 -526 8143 132 35 11 chrX 26583110 26584505 -136015425 - Ricksha DNA DNA -39 3207 1821 1726 156 3 3 chrX 26584503 26584785 -136015145 - Ricksha DNA DNA -966 288 7 * 1542 169 0 22 chrX 26584787 26585065 -136014865 + L1M3 LINE L1 5345 5616 -567 693 260 97 50 chrX 26585065 26585404 -136014526 - LTR16C LTR ERVL -23 468 114 224 261 91 11 chrX 26586033 26586121 -136013809 + MIR3 SINE MIR 105 199 -9 252 149 68 0 chrX 26586494 26586568 -136013362 + (TA)n Simple_repeat Simple_repeat 1 79 0 761 191 105 34 chrX 26587689 26587898 -136012032 - MER58A DNA MER1_type 0 224 1 264 289 106 10 chrX 26588100 26588204 -136011726 + MIR SINE MIR 99 212 -50 5893 96 8 9 chrX 26588459 26589313 -136010617 - L1PA15 LINE L1 -2 6163 5311 6843 205 37 33 chrX 26589489 26590453 -136009477 + L1MA8 LINE L1 3190 4148 -2143 1664 185 11 0 chrX 26590453 26590729 -136009201 + AluJb SINE Alu 1 279 -33 189 0 0 0 chrX 26590733 26590754 -136009176 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6843 205 37 33 chrX 26590754 26591849 -136008081 + L1MA8 LINE L1 4150 5291 -1000 2055 118 0 55 chrX 26591849 26592179 -136007751 + AluSx SINE Alu 1 312 0 6843 205 37 33 chrX 26592179 26593179 -136006751 + L1MA8 LINE L1 5291 6285 -6 233 189 0 0 chrX 26593192 26593245 -136006685 + L1MB4 LINE L1 6127 6179 -1 234 320 62 23 chrX 26593258 26593386 -136006544 + MIR SINE MIR 20 152 -110 7149 149 12 8 chrX 26593392 26594850 -136005080 - L1PA15 LINE L1 -1 6164 4696 291 28 0 0 chrX 26594850 26594886 -136005044 + (TTC)n Simple_repeat Simple_repeat 2 37 0 7149 149 12 8 chrX 26594886 26595597 -136004333 - L1PA15 LINE L1 -1469 4696 3989 2215 30 0 0 chrX 26595814 26596077 -136003853 + L1PA4 LINE L1 5893 6155 0 2245 181 55 4 chrX 26596091 26596802 -136003128 - L1M3 LINE L1 -544 5639 4887 22 35 0 0 chrX 26596810 26596839 -136003091 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 26598769 26598792 -136001138 + AT_rich Low_complexity Low_complexity 1 23 0 398 313 88 9 chrX 26599070 26599407 -136000523 - L1ME4a LINE L1 -216 5905 5523 2217 113 0 16 chrX 26599749 26600060 -135999870 - AluSg SINE Alu -4 306 1 24557 101 7 12 chrX 26601890 26605812 -135994118 - L1P3 LINE L1 -1770 4691 763 576 311 56 20 chrX 26605816 26606173 -135993757 - L1MC/D LINE L1 -1988 5820 5451 292 252 14 35 chrX 26606176 26606319 -135993611 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 2983 198 15 65 chrX 26606341 26607018 -135992912 - MER82 DNA MER2_type -10 643 1 1587 31 5 0 chrX 26607133 26607327 -135992603 - L1PA4 LINE L1 -3 6152 5958 412 214 16 8 chrX 26607348 26607474 -135992456 + L1M4 LINE L1 5100 5226 -920 270 0 0 0 chrX 26607489 26607519 -135992411 + (TG)n Simple_repeat Simple_repeat 2 31 0 3170 81 25 0 chrX 26607636 26608107 -135991823 + L1P LINE L1 3530 4012 -2134 394 312 26 64 chrX 26608138 26608372 -135991558 - L1MEd LINE L1 -2580 3549 3325 4885 158 43 14 chrX 26608378 26609348 -135990582 - L1MB2 LINE L1 0 6171 5172 373 191 247 12 chrX 26609482 26609644 -135990286 - L1MEd LINE L1 -2920 3209 3010 333 262 159 24 chrX 26609813 26610065 -135989865 - L1MEd LINE L1 -4908 1211 926 22 0 0 0 chrX 26610078 26610100 -135989830 + AT_rich Low_complexity Low_complexity 1 22 0 237 33 0 0 chrX 26610145 26610175 -135989755 + (TTG)n Simple_repeat Simple_repeat 2 31 0 420 364 20 54 chrX 26610219 26610516 -135989414 - L1MEd LINE L1 -5730 389 103 867 125 7 0 chrX 26610639 26610783 -135989147 + L1MA4A LINE L1 6147 6291 -12 222 357 71 0 chrX 26611036 26611162 -135988768 + L3 LINE CR1 940 1074 -503 569 330 115 3 chrX 26611195 26611543 -135988387 + L3 LINE CR1 1190 1576 -1 2822 150 17 9 chrX 26612028 26612489 -135987441 + MLT1C LTR MaLR 3 467 0 24 0 0 0 chrX 26612967 26612991 -135986939 + AT_rich Low_complexity Low_complexity 1 24 0 357 286 173 1 chrX 26613305 26613504 -135986426 + MIR SINE MIR 34 262 0 2536 172 36 12 chrX 26613668 26614161 -135985769 + MLT1D LTR MaLR 1 505 0 1208 248 94 64 chrX 26614190 26614722 -135985208 - MLT1H LTR MaLR -1 548 1 29 0 0 0 chrX 26615639 26615668 -135984262 + AT_rich Low_complexity Low_complexity 1 29 0 297 206 48 0 chrX 26615670 26615733 -135984197 - L1MD2 LINE L1 -235 6124 6059 * 1218 205 4 0 chrX 26615730 26615979 -135983951 + L1ME1 LINE L1 5680 5929 -237 196 390 45 19 chrX 26615979 26616133 -135983797 + L2 LINE L2 2595 2752 -562 309 250 150 0 chrX 26616768 26616868 -135983062 + MER92B LTR ERV1 1 115 -521 339 194 0 0 chrX 26617018 26617085 -135982845 + MER92C LTR ERV1 487 553 -1 746 182 10 134 chrX 26617487 26617778 -135982152 + MER31-int LTR ERV1 1039 1293 -3643 1286 233 33 100 chrX 26618127 26618616 -135981314 + MER31-int LTR ERV1 3778 4233 -703 502 209 16 39 chrX 26618633 26618762 -135981168 + LTR37A LTR ERV1 1 126 -300 257 150 0 0 chrX 26618820 26618860 -135981070 + MER31-int LTR ERV1 4330 4369 -567 390 237 10 0 chrX 26618899 26618996 -135980934 + MER31-int LTR ERV1 4372 4469 -467 260 260 0 39 chrX 26619063 26619140 -135980790 + MER31-int LTR ERV1 4482 4555 -381 310 231 0 0 chrX 26619597 26619662 -135980268 + MER92B LTR ERV1 1 65 -571 360 167 30 0 chrX 26619882 26619948 -135979982 + MER92C LTR ERV1 487 554 0 319 272 16 24 chrX 26620833 26620958 -135978972 + CT-rich Low_complexity Low_complexity 5 128 0 425 266 35 0 chrX 26621528 26621641 -135978289 + MIR3 SINE MIR 40 156 -52 2397 46 0 3 chrX 26621681 26622024 -135977906 + AluY SINE Alu 1 342 0 361 303 70 38 chrX 26622057 26622242 -135977688 - MIR SINE MIR -7 255 65 67 60 0 0 chrX 26622776 26622892 -135977038 + AT_rich Low_complexity Low_complexity 1 116 0 420 270 137 58 chrX 26623496 26623840 -135976090 - L1MC4a LINE L1 -1901 5907 5537 1915 223 71 9 chrX 26624012 26624461 -135975469 - MLT1D LTR MaLR 0 505 29 1033 246 109 67 chrX 26626072 26626197 -135973733 + MLT1H1 LTR MaLR 1 119 -436 2561 60 0 0 chrX 26626197 26626499 -135973431 + AluY SINE Alu 1 302 -9 1033 246 109 67 chrX 26626499 26626897 -135973033 + MLT1H1 LTR MaLR 119 546 -9 746 287 26 17 chrX 26627259 26627489 -135972441 - MIR SINE MIR 0 262 31 339 260 65 49 chrX 26628410 26628533 -135971397 + L2 LINE L2 3184 3308 -5 4178 165 25 8 chrX 26628654 26629440 -135970490 - L1MB7 LINE L1 -9 6569 5770 444 181 0 12 chrX 26629451 26629534 -135970396 - L1MB7 LINE L1 -997 5543 5462 5114 217 37 53 chrX 26629606 26630606 -135969324 - L1MB7 LINE L1 -3142 3398 2384 2134 123 16 40 chrX 26630606 26630979 -135968951 - THE1B LTR MaLR 0 364 1 5114 217 37 53 chrX 26630979 26632425 -135967505 - L1MB7 LINE L1 -4156 2384 991 286 285 63 105 chrX 26632469 26632768 -135967162 - L1MDa LINE L1 -5534 1006 789 320 342 66 57 chrX 26632985 26633213 -135966717 - L1MDa LINE L1 -5898 642 413 825 264 61 32 chrX 26633395 26633706 -135966224 - L1MDa LINE L1 -6133 407 88 552 229 25 8 chrX 26634429 26634551 -135965379 - FLAM_C SINE Alu -9 124 1 1011 186 11 0 chrX 26634556 26634739 -135965191 + Tigger1 DNA MER2_type 2231 2415 -3 242 279 112 6 chrX 26634742 26634903 -135965027 - L1M4 LINE L1 -2380 3766 3589 243 0 0 0 chrX 26634906 26634933 -135964997 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 9894 31 0 0 chrX 26634939 26636884 -135963046 - L1PA3 LINE L1 -3 6152 4206 7727 33 2 0 chrX 26636880 26637844 -135962086 + L1P LINE L1 2511 3476 -2670 21727 40 9 3 chrX 26637991 26640920 -135959010 - L1P2 LINE L1 -472 5682 2731 424 366 45 24 chrX 26641702 26641948 -135957982 + MIR SINE MIR 3 253 -9 1808 111 49 85 chrX 26642803 26643192 -135956738 + THE1C LTR MaLR 1 375 0 207 69 0 0 chrX 26644141 26644170 -135955760 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 329 242 50 43 chrX 26644893 26645054 -135954876 - MER103 DNA DNA -2 164 3 331 143 18 0 chrX 26645440 26645496 -135954434 - THE1C LTR MaLR 0 375 319 415 160 287 7 chrX 26646234 26646368 -135953562 - MER5A DNA MER1_type -10 179 4 472 340 115 32 chrX 26647121 26647521 -135952409 - L2 LINE L2 0 3313 2881 231 218 0 0 chrX 26647576 26647631 -135952299 - L1MB2 LINE L1 -1 6170 6116 394 331 71 39 chrX 26647659 26647967 -135951963 + L1M2 LINE L1 4 321 -6528 * 2406 160 60 8 chrX 26647963 26648672 -135951258 + L1PA14 LINE L1 4806 5542 -624 6841 181 20 16 chrX 26648696 26650569 -135949361 + L1PA12 LINE L1 1926 3818 -3766 4020 109 6 19 chrX 26650570 26650933 -135948997 + L1PA14 LINE L1 5542 5895 -266 1858 167 0 3 chrX 26650933 26651232 -135948698 + AluJb SINE Alu 1 298 -14 4020 109 6 19 chrX 26651232 26651494 -135948436 + L1PA14 LINE L1 5895 6159 -2 3263 125 101 12 chrX 26651494 26652067 -135947863 + L1PB4 LINE L1 5530 6154 -2 407 200 0 0 chrX 26652092 26652162 -135947768 - FAM SINE Alu -27 158 89 2600 161 33 4 chrX 26652165 26652624 -135947306 - L1MB2 LINE L1 -77 6094 5623 * 17276 69 7 5 chrX 26652622 26654911 -135945019 + L1P LINE L1 1 2292 -3854 674 162 136 30 chrX 26655040 26655238 -135944692 + THE1B LTR MaLR 146 364 0 439 312 77 27 chrX 26655422 26655643 -135944287 + MIR SINE MIR 1 232 -30 1368 148 22 134 chrX 26655648 26656059 -135943871 + MLT1A1 LTR MaLR 1 365 0 809 253 0 6 chrX 26656516 26656694 -135943236 + MER5B DNA MER1_type 2 178 0 384 239 33 0 chrX 26656712 26656804 -135943126 + MER5A DNA MER1_type 12 106 -83 1713 261 57 6 chrX 26657088 26657602 -135942328 + MLT1F LTR MaLR 1 588 -2 398 389 36 16 chrX 26657829 26658076 -135941854 + L3 LINE CR1 217 468 -1109 255 365 24 16 chrX 26658342 26658468 -135941462 + L3 LINE CR1 500 626 -951 256 225 56 0 chrX 26660450 26660521 -135939409 - MER20 DNA MER1_type -143 76 2 496 241 146 50 chrX 26661001 26661262 -135938668 - L2 LINE L2 -1153 2161 1876 207 0 0 0 chrX 26661270 26661293 -135938637 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2018 110 22 0 chrX 26661293 26661565 -135938365 - AluSx SINE Alu -34 278 1 277 344 82 6 chrX 26661870 26662053 -135937877 + L3b LINE CR1 1145 1341 -242 200 106 21 43 chrX 26662235 26662282 -135937648 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 2117 109 7 3 chrX 26662302 26662605 -135937325 + AluSx SINE Alu 1 304 -8 276 120 0 0 chrX 26663228 26663278 -135936652 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 386 207 4 100 chrX 26664934 26665079 -135934851 + MLT1H LTR MaLR 28 191 -246 287 87 0 0 chrX 26666486 26666532 -135933398 + L1MA3 LINE L1 6260 6305 0 887 221 9 9 chrX 26666957 26667170 -135932760 + L1M3 LINE L1 5255 5467 -716 3013 165 34 0 chrX 26667294 26667832 -135932098 + L1MA9 LINE L1 5419 5974 -338 736 184 0 0 chrX 26667828 26667969 -135931961 - L1 LINE L1 -1154 4992 4852 * 1909 161 18 0 chrX 26667975 26668305 -135931625 + L1PB4 LINE L1 5807 6142 -14 1789 149 26 23 chrX 26668322 26668475 -135931455 + L1MA9 LINE L1 5961 6112 -200 1414 183 93 19 chrX 26668475 26668798 -135931132 - MER7A DNA MER2_type -1 345 1 1789 149 26 23 chrX 26668798 26668994 -135930936 + L1MA9 LINE L1 6112 6311 -1 226 268 10 10 chrX 26669089 26669186 -135930744 + CT-rich Low_complexity Low_complexity 4 100 0 281 317 28 14 chrX 26669703 26669848 -135930082 + HAL1 LINE L1 1112 1258 -1249 360 176 40 0 chrX 26669969 26670043 -135929887 + MLT1D LTR MaLR 429 505 0 351 311 96 47 chrX 26670806 26671169 -135928761 + L1MC/D LINE L1 4909 5289 -857 1170 264 57 10 chrX 26671177 26671560 -135928370 + L1MC/D LINE L1 5319 5719 -2089 1756 178 11 0 chrX 26671577 26671858 -135928072 + AluJo SINE Alu 5 288 -24 2073 138 0 19 chrX 26672018 26672329 -135927601 + AluSx SINE Alu 1 305 -7 1037 127 16 19 chrX 26672341 26672554 -135927376 + L1 LINE L1 5101 5310 -854 437 219 80 36 chrX 26672558 26672695 -135927235 + L1MC/D LINE L1 5560 5702 -2106 5508 86 56 4 chrX 26672732 26673560 -135926370 + L1MA2 LINE L1 5433 6303 -1 2372 97 0 7 chrX 26673578 26673886 -135926044 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 26674092 26674114 -135925816 + AT_rich Low_complexity Low_complexity 1 22 0 1491 189 108 44 chrX 26674389 26674732 -135925198 - MLT1A1 LTR MaLR 0 365 1 226 224 0 20 chrX 26676612 26676661 -135923269 + MER5A DNA MER1_type 4 51 -138 1663 181 46 38 chrX 26676661 26676845 -135923085 + MLT1B LTR MaLR 1 182 -208 387 0 0 0 chrX 26676845 26676888 -135923042 + (TC)n Simple_repeat Simple_repeat 2 44 0 1663 181 46 38 chrX 26676888 26677074 -135922856 + MLT1B LTR MaLR 182 374 -16 548 239 51 0 chrX 26677080 26677218 -135922712 + MER5A DNA MER1_type 45 189 0 201 232 89 18 chrX 26678407 26678463 -135921467 + L2 LINE L2 3206 3265 -7 42 57 0 0 chrX 26679671 26679741 -135920189 + GC_rich Low_complexity Low_complexity 1 70 0 28 0 0 0 chrX 26679794 26679822 -135920108 + GC_rich Low_complexity Low_complexity 1 28 0 1559 171 25 4 chrX 26680325 26680605 -135919325 - MLT1C LTR MaLR -50 417 132 362 305 150 0 chrX 26680910 26681077 -135918853 - L1ME LINE L1 -3459 2621 2430 311 312 50 7 chrX 26681534 26681675 -135918255 - L1ME LINE L1 -5887 183 37 1497 164 47 3 chrX 26682378 26682677 -135917253 - L1MA7 LINE L1 -7 6284 5973 420 20 0 0 chrX 26683143 26683192 -135916738 + (TG)n Simple_repeat Simple_repeat 2 50 0 630 178 14 62 chrX 26683693 26683839 -135916091 + L1MB8 LINE L1 3996 4134 -2012 * 3602 209 65 17 chrX 26683837 26684961 -135914969 + L1MB8 LINE L1 4421 5599 -567 1016 199 76 0 chrX 26684965 26685256 -135914674 + L1 LINE L1 3029 3341 -2805 614 98 20 0 chrX 26685258 26685360 -135914570 + L1PB2 LINE L1 6046 6149 -2 685 263 0 5 chrX 26685368 26685558 -135914372 + L1MB8 LINE L1 5590 5778 -388 261 268 17 50 chrX 26685646 26685825 -135914105 + (GGGTG)n Simple_repeat Simple_repeat 5 177 0 * 311 296 0 0 chrX 26685735 26685833 -135914097 + G-rich Low_complexity Low_complexity 1 98 0 22 80 0 0 chrX 26686206 26686256 -135913674 + AT_rich Low_complexity Low_complexity 1 50 0 270 318 135 41 chrX 26686774 26686944 -135912986 - MIR SINE MIR -70 192 7 427 136 48 87 chrX 26686945 26687048 -135912882 + MER92B LTR ERV1 1 99 -537 2271 79 41 0 chrX 26687061 26687352 -135912578 - AluSg SINE Alu -7 303 1 1547 132 47 27 chrX 26687352 26687609 -135912321 - MER1B DNA MER1_type -6 333 72 1227 220 39 15 chrX 26687740 26688077 -135911853 + L1MB8 LINE L1 5828 6172 -6 570 192 24 24 chrX 26689168 26689293 -135910637 - LTR37A LTR ERV1 -295 131 7 3303 127 14 15 chrX 26689700 26690218 -135909712 + Tigger1 DNA MER2_type 1 517 -1901 432 91 0 0 chrX 26690376 26690442 -135909488 + (TG)n Simple_repeat Simple_repeat 2 67 0 339 319 85 0 chrX 26690774 26690915 -135909015 + MIR SINE MIR 104 256 -6 1431 185 32 12 chrX 26692371 26692448 -135907482 - MER89 LTR ERV1 -65 494 420 2445 112 43 14 chrX 26692448 26692868 -135907062 + MSTB1 LTR MaLR 1 432 0 1431 185 32 12 chrX 26692868 26693174 -135906756 - MER89 LTR ERV1 -139 420 4 24 0 0 0 chrX 26693435 26693459 -135906471 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chrX 26693539 26693578 -135906352 + AT_rich Low_complexity Low_complexity 1 39 0 320 301 124 18 chrX 26693711 26693824 -135906106 - MIR SINE MIR -63 145 21 3393 238 38 56 chrX 26694197 26695447 -135904483 + L1MC4 LINE L1 6815 8042 0 193 25 0 100 chrX 26696077 26696117 -135903813 + (TATG)n Simple_repeat Simple_repeat 3 38 0 348 24 0 0 chrX 26696299 26696340 -135903590 + (CA)n Simple_repeat Simple_repeat 1 41 0 888 174 12 12 chrX 26696463 26696624 -135903306 - MER58B DNA MER1_type 0 341 181 2363 89 0 3 chrX 26697546 26697848 -135902082 + AluSq SINE Alu 1 301 -12 1558 67 0 10 chrX 26698180 26698375 -135901555 + AluY SINE Alu 1 193 -118 446 200 0 0 chrX 26698886 26698996 -135900934 + AluJb SINE Alu 212 321 0 1629 130 83 7 chrX 26699006 26699282 -135900648 - Tigger1 DNA MER2_type -203 2215 1919 1535 136 0 8 chrX 26699282 26699518 -135900412 + AluSg/x SINE Alu 78 311 -1 2776 106 16 31 chrX 26699518 26699738 -135900192 - Tigger1 DNA MER2_type -1391 1027 805 2311 91 13 0 chrX 26699738 26700047 -135899883 - AluSp SINE Alu 0 313 1 2776 106 16 31 chrX 26700047 26700279 -135899651 - Tigger1 DNA MER2_type -1613 805 582 255 61 0 0 chrX 26701969 26702002 -135897928 + (CATCT)n Simple_repeat Simple_repeat 3 35 0 1246 171 49 4 chrX 26702009 26702273 -135897657 + MER33 DNA MER1_type 1 276 -48 530 301 30 12 chrX 26702581 26702747 -135897183 - MIR SINE MIR -12 250 82 6139 38 8 0 chrX 26703354 26704540 -135895390 + L1PA5 LINE L1 4813 6004 -150 714 156 0 0 chrX 26704662 26704771 -135895159 - FLAM_C SINE Alu -32 111 3 187 205 0 26 chrX 26704775 26704814 -135895116 - MER5B DNA MER1_type -137 41 4 2369 71 0 3 chrX 26705058 26705353 -135894577 - AluSc SINE Alu -15 294 1 5611 44 0 0 chrX 26705401 26706078 -135893852 + L1PA6 LINE L1 5478 6154 0 352 175 0 0 chrX 26706281 26706357 -135893573 + L1MB7 LINE L1 6066 6141 -39 2288 98 0 0 chrX 26706366 26706671 -135893259 + AluY SINE Alu 1 305 -6 1579 198 43 10 chrX 26706675 26707069 -135892861 + L1 LINE L1 2683 3089 -3057 643 142 104 0 chrX 26707513 26707619 -135892311 - MER1B DNA MER1_type -180 117 1 1618 223 9 52 chrX 26707621 26708042 -135891888 + MER92B LTR ERV1 92 494 -142 932 112 0 0 chrX 26708042 26708054 -135891876 - L1MA8 LINE L1 -339 5952 5941 793 223 159 0 chrX 26708054 26708274 -135891656 - L1MA9 LINE L1 -226 5940 5686 666 205 8 16 chrX 26708277 26708526 -135891404 + L1MA9 LINE L1 5948 6290 -22 644 225 7 0 chrX 26708563 26708701 -135891229 + GA-rich Low_complexity Low_complexity 2 140 0 334 266 86 22 chrX 26708704 26708843 -135891087 + MER92B LTR ERV1 485 632 -4 739 297 205 28 chrX 26709204 26710197 -135889733 + L2 LINE L2 994 2162 -1152 21 0 0 0 chrX 26710329 26710350 -135889580 + AT_rich Low_complexity Low_complexity 1 21 0 378 278 103 35 chrX 26710573 26711058 -135888872 - L1M4 LINE L1 -2751 3395 2878 21 71 0 0 chrX 26711263 26711305 -135888625 + GC_rich Low_complexity Low_complexity 1 42 0 258 262 12 48 chrX 26711334 26711502 -135888428 + C-rich Low_complexity Low_complexity 4 165 0 244 289 12 24 chrX 26712111 26712194 -135887736 + MLT1G1-int LTR MaLR 1028 1109 -262 1182 248 121 76 chrX 26712483 26713052 -135886878 + MLT1G1 LTR MaLR 1 595 0 326 345 14 7 chrX 26713455 26713594 -135886336 + L3b LINE CR1 1294 1433 -150 294 350 35 26 chrX 26713849 26714041 -135885889 + MIR SINE MIR 38 235 -27 236 261 115 39 chrX 26714241 26714371 -135885559 + MIR SINE MIR 67 206 -56 849 302 72 104 chrX 26714420 26715505 -135884425 - L3 LINE CR1 -127 1450 401 1015 31 79 0 chrX 26715579 26715706 -135884224 - MER85 DNA T2_type -2 137 1 21 36 0 0 chrX 26716254 26716282 -135883648 + AT_rich Low_complexity Low_complexity 1 28 0 188 417 48 0 chrX 26716549 26716633 -135883297 - L2 LINE L2 -31 3241 3154 34 24 0 0 chrX 26717213 26717254 -135882676 + AT_rich Low_complexity Low_complexity 1 41 0 725 294 73 63 chrX 26717262 26717303 -135882627 - LTR33A LTR ERVL -35 488 449 2224 118 49 0 chrX 26717303 26717650 -135882280 + THE1B LTR MaLR 1 364 0 725 294 73 63 chrX 26717650 26718085 -135881845 - LTR33A LTR ERVL -74 449 7 22 0 0 0 chrX 26718310 26718332 -135881598 + AT_rich Low_complexity Low_complexity 1 22 0 7058 65 9 0 chrX 26718463 26719780 -135880150 - L1PA7 LINE L1 -2 6152 4820 251 222 0 14 chrX 26919788 26919860 -135680070 + (TA)n Simple_repeat Simple_repeat 1 71 0 254 283 0 22 chrX 26919860 26919952 -135679978 + L1MC4 LINE L1 6614 6703 -1339 271 281 0 0 chrX 26919985 26920074 -135679856 + L1MC4 LINE L1 6615 6703 -1339 2308 138 22 0 chrX 26920899 26921255 -135678675 + THE1B LTR MaLR 1 364 0 312 91 0 0 chrX 26921913 26921957 -135677973 + (CA)n Simple_repeat Simple_repeat 2 45 0 31 44 0 0 chrX 26922454 26922499 -135677431 + AT_rich Low_complexity Low_complexity 1 45 0 234 156 0 0 chrX 26922500 26922545 -135677385 + GA-rich Low_complexity Low_complexity 4 48 0 308 312 95 62 chrX 26922852 26923240 -135676690 + L1ME4a LINE L1 4501 4901 -1245 1543 137 98 31 chrX 26923286 26923640 -135676290 + MSTA LTR MaLR 3 428 0 32 26 0 0 chrX 26923690 26923729 -135676201 + AT_rich Low_complexity Low_complexity 1 39 0 2233 115 0 6 chrX 26923857 26924169 -135675761 + AluSx SINE Alu 3 312 0 262 180 75 76 chrX 26924348 26924518 -135675412 + L1P5 LINE L1 5319 5489 -693 * 551 281 102 20 chrX 26924513 26924808 -135675122 + L1ME4a LINE L1 5509 5827 -294 581 279 80 63 chrX 26924902 26925564 -135674366 - L1MEc LINE L1 -3334 2881 2209 1896 97 19 59 chrX 26925605 26925925 -135674005 - AluSq SINE Alu -6 307 1 308 236 11 56 chrX 26926155 26926244 -135673686 + L2 LINE L2 3195 3279 -34 595 272 91 55 chrX 26926335 26926698 -135673232 - L1MEc LINE L1 -4642 1754 1405 2063 86 7 4 chrX 26926698 26927010 -135672920 - AluSg SINE Alu 0 313 1 595 272 91 55 chrX 26927010 26927373 -135672557 - L1MEc LINE L1 -4991 1405 1001 183 205 0 0 chrX 26927566 26927605 -135672325 + CT-rich Low_complexity Low_complexity 3 41 0 2918 81 74 25 chrX 26927729 26928161 -135671769 - MLT2A2 LTR ERVL 0 453 1 702 197 40 0 chrX 26928172 26928324 -135671606 + L1MA10 LINE L1 6170 6327 -7 278 314 39 58 chrX 26928438 26928645 -135671285 + L1ME4a LINE L1 5610 5812 -309 393 282 28 7 chrX 26928747 26928889 -135671041 + L1ME4a LINE L1 5968 6112 -9 6928 184 14 12 chrX 26930238 26932428 -135667502 - L1PA16 LINE L1 -179 5987 3798 3135 227 8 8 chrX 26932427 26933211 -135666719 + L1PA16 LINE L1 3014 3797 -2349 * 551 309 149 29 chrX 26934138 26934513 -135665417 - MLT1L LTR MaLR -6 609 190 236 290 14 0 chrX 26934934 26935003 -135664927 + MLT1J LTR MaLR 109 178 -333 24 77 0 0 chrX 26936446 26936498 -135663432 + AT_rich Low_complexity Low_complexity 1 52 0 194 192 0 14 chrX 26936538 26936611 -135663319 + (TA)n Simple_repeat Simple_repeat 1 72 0 214 377 49 0 chrX 26937243 26937304 -135662626 - MIR SINE MIR -184 78 15 2289 76 0 3 chrX 26937665 26937956 -135661974 + AluY SINE Alu 20 309 -2 21 0 0 0 chrX 26939022 26939043 -135660887 + AT_rich Low_complexity Low_complexity 1 21 0 225 330 39 29 chrX 26939161 26939264 -135660666 + L2 LINE L2 3209 3312 -1 485 268 56 45 chrX 26940657 26940836 -135659094 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chrX 26940903 26940924 -135659006 + AT_rich Low_complexity Low_complexity 1 21 0 983 245 100 10 chrX 26942244 26942554 -135657376 - MER58B DNA MER1_type 0 341 4 304 389 26 10 chrX 26942590 26942783 -135657147 - MIR SINE MIR -64 198 3 499 239 55 0 chrX 26942908 26943017 -135656913 - MER5A DNA MER1_type -13 176 62 3794 183 67 12 chrX 26943030 26943788 -135656142 - L1MB7 LINE L1 -23 6161 5362 412 125 0 0 chrX 26943788 26943852 -135656078 - MER5A DNA MER1_type -125 64 1 585 315 98 20 chrX 26943961 26944266 -135655664 - L2 LINE L2 -4 3309 2981 876 257 33 5 chrX 26944282 26944492 -135655438 + MIR SINE MIR 19 234 -28 328 263 13 0 chrX 26944500 26944576 -135655354 + MER69 DNA AcHobo 2 78 -1148 1018 278 142 34 chrX 26944700 26945290 -135654640 - L2 LINE L2 -339 2975 2322 514 99 0 0 chrX 26945455 26945526 -135654404 - MER39 LTR ERV1 -378 329 259 * 540 129 14 121 chrX 26945501 26945641 -135654289 - MER21A LTR ERV1 -733 198 74 495 0 0 0 chrX 26945793 26945848 -135654082 + (CA)n Simple_repeat Simple_repeat 2 56 0 185 277 223 0 chrX 26945969 26946081 -135653849 + L2 LINE L2 3176 3312 -1 244 385 71 12 chrX 26946190 26946359 -135653571 + MIR SINE MIR 28 206 -56 2296 76 0 13 chrX 26947085 26947388 -135652542 - AluSq SINE Alu -14 299 1 253 214 186 0 chrX 26947688 26947758 -135652172 + L2 LINE L2 3195 3277 -36 193 313 68 62 chrX 26948000 26948176 -135651754 - L2 LINE L2 -265 3007 2831 195 69 0 0 chrX 26949327 26949356 -135650574 + (T)n Simple_repeat Simple_repeat 1 29 0 393 256 80 24 chrX 26950317 26950442 -135649488 + MER117 DNA MER1_type 19 150 -47 207 355 58 0 chrX 26950464 26950585 -135649345 - L3 LINE CR1 -282 1295 1168 198 0 0 0 chrX 26951128 26951150 -135648780 + (T)n Simple_repeat Simple_repeat 1 22 0 390 185 12 0 chrX 26951877 26951958 -135647972 - L1MA8 LINE L1 -10 6281 6200 4395 173 48 29 chrX 26951959 26952818 -135647112 - L1 LINE L1 -2311 3835 2951 2366 92 0 0 chrX 26952818 26953124 -135646806 - AluSc SINE Alu -3 306 1 4395 173 48 29 chrX 26953124 26953302 -135646628 - L1 LINE L1 -3195 2951 2778 632 280 76 18 chrX 26953365 26953590 -135646340 - MIR SINE MIR -24 238 1 2190 78 14 14 chrX 26953613 26953909 -135646021 + AluY SINE Alu 1 296 -15 312 172 0 0 chrX 26953909 26953967 -135645963 + (TA)n Simple_repeat Simple_repeat 1 58 0 350 315 74 0 chrX 26953994 26954143 -135645787 - MIR SINE MIR -3 259 100 25 0 0 0 chrX 26954452 26954477 -135645453 + AT_rich Low_complexity Low_complexity 1 25 0 893 294 41 32 chrX 26955350 26955694 -135644236 - MLT1H LTR MaLR 0 549 203 362 270 10 20 chrX 26955868 26955968 -135643962 + MIR SINE MIR 156 254 -8 1467 153 6 102 chrX 26956253 26956599 -135643331 + AluJo SINE Alu 1 316 0 210 337 56 11 chrX 26958182 26958271 -135641659 - L2 LINE L2 -12 3260 3168 1913 212 63 52 chrX 26958428 26958984 -135640946 - MER68 LTR ERV1 0 562 1 1469 225 25 3 chrX 26960112 26960428 -135639502 - MLT1D LTR MaLR -2 503 181 1195 163 41 41 chrX 26960441 26960686 -135639244 - MLT1D LTR MaLR -260 245 1 780 230 75 58 chrX 26960775 26961053 -135638877 - L2 LINE L2 0 3313 3031 419 189 33 0 chrX 26961056 26961140 -135638790 + MLT1C LTR MaLR 1 87 -380 1495 192 120 0 chrX 26961140 26961448 -135638482 - MER2 DNA MER2_type 0 345 1 1333 186 98 55 chrX 26961453 26961819 -135638111 + MLT1C LTR MaLR 86 467 0 481 312 84 25 chrX 26961819 26962077 -135637853 - L2 LINE L2 -281 3032 2765 2618 114 39 0 chrX 26962318 26962730 -135637200 - MSTA LTR MaLR 0 428 1 247 130 0 0 chrX 26963405 26963451 -135636479 - LTR66 LTR ERVL -171 439 394 227 435 2 0 chrX 26963963 26964097 -135635833 + MIR SINE MIR 10 145 -63 225 316 0 53 chrX 26965324 26965400 -135634530 + MIR SINE MIR 24 95 -113 2048 139 0 3 chrX 26965408 26965702 -135634228 - AluSx SINE Alu -15 297 5 796 308 70 30 chrX 26965991 26966538 -135633392 - L2 LINE L2 -33 3280 2714 21 0 0 0 chrX 26969828 26969849 -135630081 + AT_rich Low_complexity Low_complexity 1 21 0 1034 170 178 35 chrX 26969852 26970111 -135629819 + AluJb SINE Alu 1 296 -6 21 0 0 0 chrX 26971077 26971098 -135628832 + AT_rich Low_complexity Low_complexity 1 21 0 514 328 39 35 chrX 26971195 26971427 -135628503 + MIR SINE MIR 29 261 -1 479 200 32 11 chrX 26971436 26971531 -135628399 + AluS SINE Alu 1 97 -216 216 0 0 0 chrX 26971535 26971559 -135628371 + (CA)n Simple_repeat Simple_repeat 1 24 0 987 221 67 30 chrX 26972988 26973286 -135626644 - MER46C DNA MER2_type -29 309 1 2246 217 60 10 chrX 26974243 26974759 -135625171 - MER34 LTR ERV1 0 542 1 371 214 0 79 chrX 26975383 26975472 -135624458 + MER96 DNA MER1_type? 94 175 0 274 317 140 21 chrX 26975536 26975864 -135624066 + L2 LINE L2 1909 2275 -1039 3694 55 4 2 chrX 26977004 26977476 -135622454 - L1PA7 LINE L1 -4 6150 5678 641 287 0 13 chrX 26977907 26978064 -135621866 + MER5B DNA MER1_type 24 178 0 910 99 0 14 chrX 26978205 26978346 -135621584 + L1PB1 LINE L1 6012 6150 -1 1220 121 204 57 chrX 26978556 26978821 -135621109 + AluJo SINE Alu 1 304 -8 21 36 0 0 chrX 26979280 26979308 -135620622 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 26979609 26979629 -135620301 + (A)n Simple_repeat Simple_repeat 1 20 0 636 202 90 85 chrX 26980349 26980424 -135619506 - MER5A DNA MER1_type 0 189 116 2387 97 0 0 chrX 26980424 26980724 -135619206 - AluSg SINE Alu -10 300 1 636 202 90 85 chrX 26980724 26980836 -135619094 - MER5A DNA MER1_type -73 116 1 447 271 8 0 chrX 26980870 26980988 -135618942 + MER103 DNA DNA 2 120 -46 2190 105 6 40 chrX 26982266 26982589 -135617341 - AluSx SINE Alu 0 312 1 535 324 82 11 chrX 26982863 26983144 -135616786 - L2 LINE L2 0 3313 3013 274 339 0 0 chrX 26983543 26983652 -135616278 - MIR SINE MIR -4 258 150 24 53 0 0 chrX 26983763 26983801 -135616129 + AT_rich Low_complexity Low_complexity 1 38 0 1357 204 87 32 chrX 26983929 26984273 -135615657 + MLT1A1 LTR MaLR 3 365 0 243 318 0 0 chrX 26985152 26985215 -135614715 + L2 LINE L2 3206 3268 -4 2016 211 44 32 chrX 26987509 26988007 -135611923 - MLT1D LTR MaLR -1 504 1 2259 97 3 0 chrX 26988362 26988660 -135611270 - AluSg SINE Alu -11 299 1 800 182 61 7 chrX 26989073 26989221 -135610709 + MLT1A1 LTR MaLR 11 166 -199 1529 227 40 20 chrX 26990006 26990354 -135609576 + MLT1A1 LTR MaLR 11 365 0 284 327 94 6 chrX 26992068 26992227 -135607703 + MER5A DNA MER1_type 17 189 0 234 256 212 15 chrX 26992556 26992693 -135607237 + MIR SINE MIR 79 242 -20 353 333 8 30 chrX 26994539 26994671 -135605259 + L2 LINE L2 3185 3313 0 1986 219 14 32 chrX 26995483 26995981 -135603949 + L1ME1 LINE L1 5584 6072 -94 351 0 0 0 chrX 26995992 26995998 -135603932 + (TG)n Simple_repeat Simple_repeat 1 45 0 351 0 0 0 chrX 26995998 26996037 -135603893 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 51 0 0 chrX 26996136 26996175 -135603755 + AT_rich Low_complexity Low_complexity 1 39 0 1262 62 0 23 chrX 26998190 26998367 -135601563 - L1MA1 LINE L1 0 6302 6130 503 314 41 17 chrX 26998944 26999116 -135600814 + MIR SINE MIR 9 184 -78 1111 223 0 22 chrX 26999130 26999354 -135600576 - MER58A DNA MER1_type -5 219 1 1978 280 172 16 chrX 27000934 27002143 -135597787 + L2 LINE L2 1897 3296 -17 1884 139 0 27 chrX 27002172 27002466 -135597464 + AluJo SINE Alu 4 289 -23 2257 114 0 0 chrX 27004867 27005164 -135594766 - AluSx SINE Alu -15 297 1 286 319 15 15 chrX 27006246 27006381 -135593549 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 250 165 33 22 chrX 27006550 27006641 -135593289 + (TA)n Simple_repeat Simple_repeat 1 92 0 200 238 79 16 chrX 27007579 27007642 -135592288 - MER5A DNA MER1_type 0 189 123 493 295 21 47 chrX 27009745 27009938 -135589992 - MIR SINE MIR -8 254 67 2329 78 17 0 chrX 27011470 27011764 -135588166 - AluSx SINE Alu -13 299 1 2075 88 27 31 chrX 27011909 27012203 -135587727 + AluSx SINE Alu 1 293 -19 185 268 0 54 chrX 27012285 27012341 -135587589 - L2 LINE L2 0 3313 3261 * 314 317 188 0 chrX 27012340 27012526 -135587404 - L2 LINE L2 -901 2413 2193 236 157 20 20 chrX 27013031 27013082 -135586848 - MLT2F LTR ERVL 0 663 613 465 228 61 0 chrX 27013154 27013268 -135586662 - MLT2F LTR ERVL -64 599 479 921 296 61 13 chrX 27013357 27013668 -135586262 - MLT2F LTR ERVL -337 326 1 28 0 0 0 chrX 27014624 27014652 -135585278 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 27015451 27015473 -135584457 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrX 27015761 27015781 -135584149 + (TG)n Simple_repeat Simple_repeat 2 21 0 2401 81 0 0 chrX 27016186 27016484 -135583446 - AluSx SINE Alu -14 298 1 1131 295 50 29 chrX 27017516 27018001 -135581929 - MLT1J LTR MaLR -16 495 1 195 114 0 0 chrX 27019276 27019311 -135580619 + (TAA)n Simple_repeat Simple_repeat 3 37 0 225 0 0 0 chrX 27019800 27019825 -135580105 + (TG)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chrX 27019824 27019846 -135580084 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 7112 49 19 10 chrX 27020996 27022287 -135577643 - L1PA8 LINE L1 -2 6170 4876 1053 205 82 72 chrX 27022403 27022731 -135577199 - LTR37A LTR ERV1 -8 418 84 2203 58 4 0 chrX 27022731 27023005 -135576925 + AluY SINE Alu 37 311 0 1053 205 82 72 chrX 27023005 27023090 -135576840 - LTR37A LTR ERV1 -342 84 1 223 253 63 42 chrX 27023367 27023462 -135576468 - MER5A DNA MER1_type -13 176 80 * 246 256 0 81 chrX 27023381 27023467 -135576463 + MER5A DNA MER1_type 43 121 -68 576 135 62 0 chrX 27024868 27024964 -135574966 + FLAM_A SINE Alu 18 119 -23 189 0 0 0 chrX 27024964 27024985 -135574945 + (TA)n Simple_repeat Simple_repeat 2 22 0 1586 141 0 155 chrX 27025681 27026042 -135573888 + AluJo SINE Alu 1 305 -7 1111 216 0 22 chrX 27026056 27026329 -135573601 + L1MB7 LINE L1 4323 4589 -1557 4242 99 65 3 chrX 27026329 27026984 -135572946 + L1PA15 LINE L1 5467 6164 -1 21 0 0 0 chrX 27027354 27027375 -135572555 + AT_rich Low_complexity Low_complexity 1 21 0 3360 150 120 26 chrX 27027396 27028077 -135571853 + L1MB7 LINE L1 5431 6175 -9 2712 195 80 8 chrX 27028151 27028762 -135571168 + MER63C DNA MER1_type 254 908 -22 184 320 22 82 chrX 27028942 27029173 -135570757 - L2 LINE L2 0 3313 3097 315 203 0 0 chrX 27029980 27030049 -135569881 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 23 33 0 0 chrX 27031131 27031161 -135568769 + AT_rich Low_complexity Low_complexity 1 30 0 228 35 0 0 chrX 27031277 27031306 -135568624 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 2055 106 3 14 chrX 27031602 27031885 -135568045 + AluSg SINE Alu 1 280 -30 21 71 0 0 chrX 27032295 27032337 -135567593 + AT_rich Low_complexity Low_complexity 1 42 0 5232 14 0 0 chrX 27032337 27032930 -135567000 - L1PA2 LINE L1 0 6155 5563 554 0 0 0 chrX 27032930 27032993 -135566937 + L1PA2 LINE L1 5487 5549 -606 742 233 0 6 chrX 27033683 27033846 -135566084 + L1MD3 LINE L1 7502 7663 -332 2058 151 0 0 chrX 27034429 27034733 -135565197 + AluSx SINE Alu 1 304 -8 243 0 0 0 chrX 27034733 27034760 -135565170 + (TA)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chrX 27034819 27034846 -135565084 + AT_rich Low_complexity Low_complexity 1 27 0 2205 56 8 0 chrX 27034849 27035115 -135564815 + AluSq SINE Alu 37 304 -9 591 301 68 16 chrX 27036833 27037082 -135562848 + MIR SINE MIR 1 262 0 2316 116 0 0 chrX 27037101 27037412 -135562518 + AluSx SINE Alu 1 311 -1 607 289 253 14 chrX 27038200 27038560 -135561370 - L3 LINE CR1 -15 1562 1117 1151 242 8 4 chrX 27040543 27040791 -135559139 + MIR SINE MIR 12 260 -2 231 270 95 14 chrX 27041004 27041078 -135558852 - L2 LINE L2 0 3272 3193 297 0 0 0 chrX 27042001 27042034 -135557896 + (T)n Simple_repeat Simple_repeat 1 33 0 1704 164 32 39 chrX 27042117 27042428 -135557502 - AluJo SINE Alu -3 309 1 854 86 0 0 chrX 27042601 27042706 -135557224 - AluSg/x SINE Alu -16 293 189 1175 167 28 9 chrX 27043217 27043432 -135556498 - MER20 DNA MER1_type 0 219 1 347 268 239 14 chrX 27043669 27043811 -135556119 - MER5A DNA MER1_type 0 189 16 309 183 0 0 chrX 27044477 27044537 -135555393 + GA-rich Low_complexity Low_complexity 2 61 0 314 167 0 33 chrX 27045144 27045204 -135554726 - L2 LINE L2 -2 3270 3213 217 297 67 19 chrX 27045859 27045964 -135553966 + MIR SINE MIR 34 144 -64 187 271 119 0 chrX 27047758 27047817 -135552113 + MIR SINE MIR 197 262 0 294 302 36 50 chrX 27047825 27047964 -135551966 + L2 LINE L2 3116 3252 -20 1930 55 35 0 chrX 27048123 27048380 -135551550 + L1PA7 LINE L1 5888 6153 -1 214 333 69 0 chrX 27048609 27048696 -135551234 - L2 LINE L2 -2 3311 3219 691 288 57 40 chrX 27048724 27049023 -135550907 - L2 LINE L2 -86 3227 2924 2555 215 119 69 chrX 27049567 27050563 -135549367 - L1MC4 LINE L1 0 8042 6997 26 0 0 0 chrX 27050980 27051006 -135548924 + AT_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chrX 27051561 27051602 -135548328 + (CA)n Simple_repeat Simple_repeat 2 42 0 2085 244 40 19 chrX 27053633 27054255 -135545675 - L1ME2 LINE L1 -6 6158 5524 2459 77 0 0 chrX 27054904 27055203 -135544727 - AluSx SINE Alu -11 301 3 2339 94 0 3 chrX 27057662 27057961 -135541969 - AluSq SINE Alu -13 300 3 534 288 58 29 chrX 27058351 27058556 -135541374 - MIR SINE MIR -33 229 19 211 271 0 0 chrX 27061673 27061721 -135538209 + (TG)n Simple_repeat Simple_repeat 1 48 0 186 294 212 12 chrX 27062927 27063012 -135536918 - MIR3 SINE MIR -105 103 2 208 309 0 0 chrX 27063080 27063135 -135536795 - L2 LINE L2 -12 3301 3247 195 42 0 0 chrX 27064005 27064029 -135535901 + (A)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chrX 27064390 27064419 -135535511 + AT_rich Low_complexity Low_complexity 1 29 0 392 271 66 8 chrX 27064628 27064750 -135535180 + L3b LINE CR1 1230 1358 -225 642 247 133 0 chrX 27065643 27065809 -135534121 + MER5A DNA MER1_type 1 188 -1 2568 52 0 7 chrX 27065841 27066148 -135533782 - AluY SINE Alu -6 305 1 21 0 0 0 chrX 27067704 27067725 -135532205 + AT_rich Low_complexity Low_complexity 1 21 0 2436 94 0 0 chrX 27069125 27069434 -135530496 + AluSx SINE Alu 2 310 -2 198 0 0 0 chrX 27071499 27071521 -135528409 + (A)n Simple_repeat Simple_repeat 1 22 0 273 75 0 0 chrX 27071824 27071864 -135528066 + (TA)n Simple_repeat Simple_repeat 1 40 0 324 125 0 0 chrX 27071864 27071928 -135528002 + (A)n Simple_repeat Simple_repeat 1 64 0 21 0 0 0 chrX 27072436 27072457 -135527473 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chrX 27072873 27072900 -135527030 + (CA)n Simple_repeat Simple_repeat 1 27 0 309 51 0 0 chrX 27076070 27076109 -135523821 + (TG)n Simple_repeat Simple_repeat 2 40 0 401 118 118 0 chrX 27078392 27078460 -135521470 + AluS SINE Alu 1 76 -227 2393 93 0 10 chrX 27078527 27078838 -135521092 + AluSg SINE Alu 1 308 -2 386 287 70 32 chrX 27080088 27080245 -135519685 + MER5B DNA MER1_type 15 177 -1 350 255 155 37 chrX 27080257 27080418 -135519512 - MER5A DNA MER1_type -7 182 3 21 57 0 0 chrX 27080850 27080885 -135519045 + AT_rich Low_complexity Low_complexity 1 35 0 260 118 0 20 chrX 27083192 27083243 -135516687 + (TA)n Simple_repeat Simple_repeat 2 51 0 2388 71 0 0 chrX 27083365 27083660 -135516270 + AluY SINE Alu 5 299 -12 232 286 0 44 chrX 27085529 27085620 -135514310 + MIR SINE MIR 69 155 -107 418 332 48 78 chrX 27085677 27086090 -135513840 - L2 LINE L2 -29 3284 2884 2333 90 0 10 chrX 27086092 27086393 -135513537 + AluSg SINE Alu 1 298 -12 243 0 0 0 chrX 27086467 27086494 -135513436 + (TG)n Simple_repeat Simple_repeat 2 28 0 2380 75 0 7 chrX 27086630 27086935 -135512995 - AluY SINE Alu -8 303 1 525 258 138 79 chrX 27087300 27087808 -135512122 - MLT1H LTR MaLR -4 545 1 5450 95 20 1 chrX 27089337 27090139 -135509791 - L1MA3 LINE L1 0 7724 6908 2705 62 122 5 chrX 27090139 27090540 -135509390 + LTR7 LTR ERV1 1 448 -2 3040 103 9 21 chrX 27090542 27091007 -135508923 + HERVH LTR ERV1 1 459 -7254 14598 135 67 39 chrX 27091061 27094174 -135505756 + HERVH LTR ERV1 793 3993 -3720 4449 133 1 1 chrX 27094176 27094835 -135505095 + HERVH LTR ERV1 4488 5146 -2567 1332 151 18 0 chrX 27094835 27095054 -135504876 + HERVH LTR ERV1 5597 5819 -1894 * 2490 82 48 13 chrX 27095052 27095431 -135504499 + HERVH LTR ERV1 7322 7713 0 2614 86 98 5 chrX 27095433 27095841 -135504089 + LTR7 LTR ERV1 3 448 -2 1744 155 10 0 chrX 27095843 27096329 -135503601 - L1MA3 LINE L1 -743 6822 6421 * 40659 36 1 1 chrX 27096324 27102478 -135497452 - L1PA3 LINE L1 0 6155 1 12641 169 52 18 chrX 27102479 27103606 -135496324 - L1MA3 LINE L1 -1133 6432 5345 1964 125 0 7 chrX 27103606 27103887 -135496043 - AluSx SINE Alu -4 308 30 12641 169 52 18 chrX 27103887 27103904 -135496026 - L1MA3 LINE L1 -2220 5345 5330 2210 99 3 0 chrX 27103904 27104211 -135495719 - AluSq SINE Alu 0 308 1 12641 169 52 18 chrX 27104211 27107399 -135492531 - L1MA3 LINE L1 -2235 5330 16 314 263 149 0 chrX 27107478 27107592 -135492338 + MIR SINE MIR 59 189 -73 557 298 105 41 chrX 27109406 27109701 -135490229 - MLT1J2 LTR MaLR -16 434 121 1423 277 30 13 chrX 27109736 27110129 -135489801 - LTR16A LTR ERVL -35 415 16 2261 93 10 6 chrX 27110372 27110683 -135489247 - AluSx SINE Alu 0 312 1 25 31 0 0 chrX 27110778 27110810 -135489120 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chrX 27110891 27110940 -135488990 + AT_rich Low_complexity Low_complexity 1 49 0 1494 281 115 35 chrX 27111793 27112165 -135487765 - MLT1E LTR MaLR 0 593 161 303 49 0 0 chrX 27112165 27112206 -135487724 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1494 281 115 35 chrX 27112206 27112382 -135487548 - MLT1E LTR MaLR -432 161 1 1612 99 9 0 chrX 27112571 27112792 -135487138 + L1MA1 LINE L1 6080 6302 0 271 202 90 0 chrX 27113850 27113939 -135485991 - LTR37A LTR ERV1 -2 424 328 1563 222 25 18 chrX 27113953 27114350 -135485580 - LTR37B LTR ERV1 -63 405 6 1674 202 27 21 chrX 27114413 27114750 -135485180 - MER58B DNA MER1_type -1 340 2 28 79 0 0 chrX 27116067 27116130 -135483800 + AT_rich Low_complexity Low_complexity 1 63 0 269 325 118 61 chrX 27116961 27117173 -135482757 - MLT1H LTR MaLR -207 342 119 190 191 149 0 chrX 27117394 27117441 -135482489 - L2 LINE L2 -5 3308 3255 340 295 15 60 chrX 27117631 27117831 -135482099 + LTR16B LTR ERVL 274 464 0 503 308 27 11 chrX 27118375 27118560 -135481370 - MER117 DNA MER1_type -8 189 2 761 308 36 42 chrX 27119533 27119868 -135480062 + LTR16B LTR ERVL 131 463 -1 260 282 0 14 chrX 27121506 27121577 -135478353 - LTR33A LTR ERVL -6 517 448 243 270 45 54 chrX 27121769 27121880 -135478050 - MLT2E LTR ERVL -480 148 39 21 36 0 0 chrX 27122394 27122422 -135477508 + AT_rich Low_complexity Low_complexity 1 28 0 206 291 0 0 chrX 27123088 27123143 -135476787 + GA-rich Low_complexity Low_complexity 1 55 0 1385 133 59 30 chrX 27123738 27124009 -135475921 + THE1C LTR MaLR 94 372 -3 431 311 71 5 chrX 27124011 27124207 -135475723 - MIR SINE MIR -7 255 47 478 263 156 8 chrX 27124285 27124598 -135475332 + MLT1G1 LTR MaLR 1 304 -226 349 248 174 0 chrX 27124630 27124739 -135475191 + MLT1G1 LTR MaLR 279 406 -136 1653 274 171 4 chrX 27125044 27125552 -135474378 - MLT1E LTR MaLR 0 593 1 1128 286 48 23 chrX 27125621 27125917 -135474013 + L2 LINE L2 2911 3221 -92 2223 97 17 0 chrX 27125917 27126215 -135473715 + AluSc SINE Alu 1 303 -6 1128 286 48 23 chrX 27126215 27126310 -135473620 + L2 LINE L2 3221 3312 -1 4234 33 8 0 chrX 27126652 27127165 -135472765 + L1P LINE L1 3261 3777 -2369 240 150 46 31 chrX 27127265 27127330 -135472600 + L1MC4 LINE L1 2006 6983 -1339 255 250 0 62 chrX 27127331 27127427 -135472503 - L1MC4 LINE L1 -1339 6703 6614 * 265 311 0 0 chrX 27127403 27127493 -135472437 + L1MC4 LINE L1 6614 6703 -1339 226 286 0 24 chrX 27127465 27127549 -135472381 - L1MC4 LINE L1 -1339 6703 6622 * 1065 145 0 0 chrX 27127549 27127728 -135472202 + (TA)n Simple_repeat Simple_repeat 2 180 0 301 285 60 20 chrX 27127763 27127914 -135472016 - L1M4 LINE L1 -2952 3194 3038 642 149 0 75 chrX 27127957 27128118 -135471812 + MER5C DNA MER1_type 176 324 0 566 0 0 92 chrX 27129396 27129483 -135470447 + (T)n Simple_repeat Simple_repeat 1 79 0 243 0 0 0 chrX 27129633 27129660 -135470270 + (T)n Simple_repeat Simple_repeat 1 27 0 26 30 0 0 chrX 27129806 27129839 -135470091 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chrX 27129865 27129901 -135470029 + AT_rich Low_complexity Low_complexity 1 36 0 333 82 0 0 chrX 27130120 27130169 -135469761 + (CA)n Simple_repeat Simple_repeat 2 50 0 2539 58 0 43 chrX 27130329 27130656 -135469274 + AluSp SINE Alu 1 313 0 369 0 0 0 chrX 27130673 27130714 -135469216 + (A)n Simple_repeat Simple_repeat 1 41 0 368 252 92 8 chrX 27131913 27132032 -135467898 + L1ME4a LINE L1 5992 6120 -1 1785 63 41 0 chrX 27133067 27133288 -135466642 - AluY SINE Alu -81 230 1 23 0 0 0 chrX 27133289 27133312 -135466618 + AT_rich Low_complexity Low_complexity 1 23 0 1229 188 9 125 chrX 27133312 27133648 -135466282 - AluJb SINE Alu -3 299 3 2311 91 7 0 chrX 27133652 27133950 -135465980 - AluSx SINE Alu -12 300 1 1811 139 42 0 chrX 27133950 27134237 -135465693 - AluJb SINE Alu -13 299 1 237 271 0 0 chrX 27134238 27134308 -135465622 + L1MB7 LINE L1 6115 6184 0 1690 133 70 11 chrX 27134366 27134637 -135465293 - AluJb SINE Alu -24 288 2 26 0 0 0 chrX 27135020 27135046 -135464884 + AT_rich Low_complexity Low_complexity 1 26 0 1977 150 0 0 chrX 27135046 27135332 -135464598 - AluSx SINE Alu -26 286 1 1625 156 20 20 chrX 27135335 27135630 -135464300 - AluJb SINE Alu -17 295 1 21 36 0 0 chrX 27137513 27137541 -135462389 + AT_rich Low_complexity Low_complexity 1 28 0 798 66 16 74 chrX 27138836 27138957 -135460973 - AluY SINE Alu -196 115 2 951 134 11 34 chrX 27138958 27139137 -135460793 + L1MB4 LINE L1 6004 6178 -2 1183 177 163 24 chrX 27139151 27139445 -135460485 + L1MB5 LINE L1 5833 6167 -7 253 141 202 0 chrX 27140730 27140829 -135459101 + AluYa5 SINE Alu 15 133 -168 36 64 0 0 chrX 27141966 27142013 -135457917 + AT_rich Low_complexity Low_complexity 1 47 0 2101 30 0 0 chrX 27342109 27342345 -135257585 - AluY SINE Alu -75 236 1 371 186 25 17 chrX 27342381 27342499 -135257431 + CT-rich Low_complexity Low_complexity 2 120 0 394 260 41 32 chrX 27342595 27342718 -135257212 + MLT1H LTR MaLR 177 300 -249 210 195 52 52 chrX 27342749 27342826 -135257104 - L3 LINE CR1 -26 1551 1475 640 328 70 16 chrX 27342930 27343299 -135256631 - L2 LINE L2 -972 2342 1954 2799 242 54 13 chrX 27343734 27344568 -135255362 - MER97a DNA MER1_type? -12 882 15 229 250 16 16 chrX 27344881 27344945 -135254985 + Charlie7 DNA MER1_type 1800 1863 -749 261 83 0 0 chrX 27345723 27345759 -135254171 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 486 0 0 0 chrX 27345759 27345813 -135254117 + (TG)n Simple_repeat Simple_repeat 2 55 0 429 225 121 75 chrX 27345836 27346076 -135253854 - MLT1L LTR MaLR -353 262 12 1038 170 0 0 chrX 27346282 27346453 -135253477 + AluSg/x SINE Alu 137 307 -5 600 257 127 46 chrX 27346505 27346789 -135253141 + Charlie7 DNA MER1_type 50 356 -2256 * 1445 258 69 42 chrX 27346785 27347467 -135252463 + Charlie7 DNA MER1_type 1471 2170 -442 2191 120 0 0 chrX 27347601 27347901 -135252029 - AluSx SINE Alu -12 300 1 237 83 0 0 chrX 27348433 27348469 -135251461 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 2140 106 3 0 chrX 27348605 27348926 -135251004 + AluSq SINE Alu 1 322 0 292 287 72 29 chrX 27349399 27349608 -135250322 - MER31-int LTR ERV1 -3021 1915 1698 327 194 0 0 chrX 27349796 27349868 -135250062 + L1PB1 LINE L1 129 200 -6663 13807 178 35 15 chrX 27349868 27353425 -135246505 + L1PB1 LINE L1 634 4472 -2395 2494 66 3 0 chrX 27353425 27353727 -135246203 + AluSp SINE Alu 1 303 -10 13807 178 35 15 chrX 27353727 27356173 -135243757 + L1PB1 LINE L1 4472 6867 0 1063 209 117 33 chrX 27357093 27357485 -135242445 - LTR37A LTR ERV1 -1 425 1 186 334 68 60 chrX 27357907 27358260 -135241670 - L2 LINE L2 -2424 890 535 322 316 38 29 chrX 27358950 27359159 -135240771 + MIR SINE MIR 38 248 -14 1266 173 31 0 chrX 27360580 27360806 -135239124 + MSTA LTR MaLR 1 233 -195 1224 140 11 0 chrX 27360917 27361103 -135238827 + MSTA LTR MaLR 232 419 -9 348 284 169 22 chrX 27361123 27361306 -135238624 - MIR SINE MIR -13 249 40 455 248 0 34 chrX 27361460 27361577 -135238353 + L2 LINE L2 3200 3312 -1 237 333 197 27 chrX 27361738 27361885 -135238045 - MER5A DNA MER1_type -2 187 16 515 280 15 8 chrX 27362560 27362692 -135237238 + L2 LINE L2 3181 3313 0 1645 132 47 38 chrX 27363212 27363553 -135236377 - L1MA8 LINE L1 -3 6288 5945 5498 181 43 8 chrX 27363830 27364979 -135234951 + L1MB1 LINE L1 4127 5373 -795 216 67 0 0 chrX 27364979 27365009 -135234921 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5498 181 43 8 chrX 27365009 27365834 -135234096 + L1MB1 LINE L1 5373 6167 -1 1403 277 29 50 chrX 27365847 27366024 -135233906 - L2 LINE L2 -1201 2113 1934 1621 169 4 4 chrX 27366024 27366284 -135233646 + AluJb SINE Alu 1 260 -52 1403 277 29 50 chrX 27366284 27366652 -135233278 - L2 LINE L2 -1380 1934 1579 6367 14 0 0 chrX 27367062 27367793 -135232137 - L1P LINE L1 -1409 4737 4007 6145 13 0 0 chrX 27367793 27368528 -135231402 + L1PA2 LINE L1 5460 6198 0 204 40 0 0 chrX 27368576 27368601 -135231329 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 939 289 53 7 chrX 27368797 27369081 -135230849 + MER110 LTR ERV1 188 484 -7 496 333 18 6 chrX 27369434 27369602 -135230328 + MIR3 SINE MIR 20 189 -19 25 0 0 0 chrX 27369620 27369645 -135230285 + AT_rich Low_complexity Low_complexity 1 25 0 299 254 0 93 chrX 27370248 27370366 -135229564 + MLT1H LTR MaLR 430 536 -13 464 195 81 86 chrX 27371901 27372075 -135227855 + MLT1H LTR MaLR 377 549 0 25 31 0 0 chrX 27372234 27372266 -135227664 + AT_rich Low_complexity Low_complexity 1 32 0 664 336 50 0 chrX 27372427 27372647 -135227283 - MIR SINE MIR -24 238 8 851 194 12 6 chrX 27372820 27372980 -135226950 - MER5B DNA MER1_type -17 161 1 388 265 107 52 chrX 27374599 27374758 -135225172 - MER5A DNA MER1_type -18 160 7 2041 217 72 25 chrX 27375157 27375686 -135224244 + MLT2B3 LTR ERVL 1 554 0 3583 144 46 0 chrX 27375686 27376291 -135223639 + MSTA-int LTR MaLR 1 633 -1018 1328 113 5 5 chrX 27376292 27376496 -135223434 + MSTA-int LTR MaLR 1448 1651 0 1862 139 144 51 chrX 27376499 27376888 -135223042 + MSTA LTR MaLR 4 428 0 1987 171 37 0 chrX 27377590 27377942 -135221988 + MLT1A1 LTR MaLR 1 365 0 270 277 20 20 chrX 27378140 27378241 -135221689 + MER103 DNA DNA 65 165 -1 216 245 57 0 chrX 27378933 27378986 -135220944 + L2 LINE L2 3258 3313 0 2350 56 0 7 chrX 27379633 27379939 -135219991 - AluY SINE Alu 0 304 1 188 205 0 0 chrX 27381490 27381529 -135218401 + MIR SINE MIR 77 115 -147 352 305 7 40 chrX 27383575 27383726 -135216204 - L1MCa LINE L1 -4835 1591 1446 251 280 30 50 chrX 27383726 27383826 -135216104 - HAL1 LINE L1 -1121 1386 1289 659 206 0 23 chrX 27384424 27384555 -135215375 - FLAM_A SINE Alu -5 137 10 2428 50 30 0 chrX 27384640 27384937 -135214993 + AluY SINE Alu 1 306 -5 278 288 18 63 chrX 27384963 27385185 -135214745 - L1ME LINE L1 -335 5829 5618 296 284 135 12 chrX 27385227 27385449 -135214481 - L1ME LINE L1 -659 5505 5258 1359 182 65 59 chrX 27385798 27386122 -135213808 + MLT1D LTR MaLR 180 505 0 260 186 0 0 chrX 27387846 27387889 -135212041 + MLT1I LTR MaLR 363 405 -4 692 120 0 51 chrX 27388610 27388698 -135211232 + FLAM_C SINE Alu 32 114 -198 1195 7 0 14 chrX 27388698 27388844 -135211086 + (TAGA)n Simple_repeat Simple_repeat 1 144 0 692 120 0 51 chrX 27388844 27388872 -135211058 + FLAM_C SINE Alu 114 142 -170 3211 254 68 12 chrX 27389010 27391297 -135208633 + L1MA9 LINE L1 1 2131 -4081 2045 182 25 19 chrX 27391286 27391719 -135208211 + L1MA9 LINE L1 3451 3886 -2324 * 5782 162 25 19 chrX 27391712 27393514 -135206416 + L1MA9 LINE L1 4556 6376 0 354 317 130 31 chrX 27393881 27394042 -135205888 + MER5B DNA MER1_type 1 177 -1 2106 129 7 0 chrX 27394210 27394512 -135205418 - AluSq SINE Alu -9 304 1 21 0 0 0 chrX 27396539 27396560 -135203370 + AT_rich Low_complexity Low_complexity 1 21 0 4545 184 72 184 chrX 27396764 27398082 -135201848 + L1MCa LINE L1 3 1197 -4848 525 154 0 19 chrX 27398280 27398384 -135201546 + L1MB3 LINE L1 6080 6181 -2 2442 169 47 78 chrX 27398519 27399182 -135200748 - LTR48B LTR ERV1 0 644 3 511 197 49 0 chrX 27399194 27399316 -135200614 + L1MA9 LINE L1 6177 6304 -8 23 0 0 0 chrX 27399409 27399432 -135200498 + AT_rich Low_complexity Low_complexity 1 23 0 2364 167 51 6 chrX 27399597 27400069 -135199861 + L1MB3 LINE L1 5688 6180 -3 228 378 18 9 chrX 27400083 27400194 -135199736 + L2 LINE L2 2540 2651 -663 2114 30 56 11 chrX 27400400 27400700 -135199230 + AluY SINE Alu 1 312 0 2704 184 53 9 chrX 27401261 27401788 -135198142 - MER44D DNA MER2_type 0 605 1 31 0 0 0 chrX 27403668 27403699 -135196231 + AT_rich Low_complexity Low_complexity 1 31 0 206 146 0 24 chrX 27404383 27404424 -135195506 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1147 134 37 28 chrX 27404712 27404929 -135195001 - MER20 DNA MER1_type 0 219 1 1441 243 60 21 chrX 27405040 27405522 -135194408 + L1ME3 LINE L1 5647 6147 -15 576 0 0 0 chrX 27405636 27405700 -135194230 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 1927 176 15 53 chrX 27405701 27406099 -135193831 - MLT1B LTR MaLR -3 387 5 375 89 0 0 chrX 27406099 27406155 -135193775 + (CA)n Simple_repeat Simple_repeat 1 56 0 466 313 54 20 chrX 27406194 27406423 -135193507 - MIR SINE MIR -25 237 2 244 218 0 18 chrX 27407208 27407263 -135192667 - MIR SINE MIR -111 151 98 313 363 45 32 chrX 27407559 27407716 -135192214 - L2 LINE L2 0 3272 3114 306 0 0 0 chrX 27407729 27407763 -135192167 + (GA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chrX 27408912 27408933 -135190997 + AT_rich Low_complexity Low_complexity 1 21 0 7796 193 26 10 chrX 27408937 27410981 -135188949 - L1PA16 LINE L1 -5 6161 4061 2645 114 46 7 chrX 27410981 27411393 -135188537 - MSTA LTR MaLR 0 428 1 7796 193 26 10 chrX 27411393 27411936 -135187994 - L1PA16 LINE L1 -2105 4061 3529 2265 97 7 3 chrX 27412241 27412550 -135187380 + AluSx SINE Alu 1 310 -2 33 43 0 0 chrX 27412687 27412734 -135187196 + AT_rich Low_complexity Low_complexity 1 47 0 661 231 78 112 chrX 27412957 27413368 -135186562 - HAL1b LINE L1 -370 978 582 445 304 7 7 chrX 27413565 27413700 -135186230 - HAL1 LINE L1 -758 1749 1615 33 25 0 0 chrX 27413856 27413896 -135186034 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrX 27413907 27413929 -135186001 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 27414097 27414118 -135185812 + AT_rich Low_complexity Low_complexity 1 21 0 302 340 108 42 chrX 27414886 27415127 -135184803 - L3b LINE CR1 -17 1566 1310 227 315 0 56 chrX 27415205 27415294 -135184636 - LTR16A1 LTR ERVL -9 448 365 222 333 0 0 chrX 27415641 27415716 -135184214 + MIR SINE MIR 122 196 -66 1829 173 0 6 chrX 27415716 27415894 -135184036 - AluJb SINE Alu -1 311 134 2482 37 3 3 chrX 27415894 27416192 -135183738 - AluY SINE Alu -13 298 1 1829 173 0 6 chrX 27416192 27416326 -135183604 - AluJb SINE Alu -178 134 1 1197 224 137 31 chrX 27416675 27417033 -135182897 - MSTD LTR MaLR 0 396 1 3241 200 33 8 chrX 27417066 27417790 -135182140 + L1MB8 LINE L1 5437 6178 0 1795 200 34 48 chrX 27418817 27419291 -135180639 + MLT1C LTR MaLR 1 467 0 414 336 108 9 chrX 27419843 27420057 -135179873 - MIR SINE MIR 0 262 28 1390 211 38 41 chrX 27420283 27420625 -135179305 + LTR16C LTR ERVL 151 491 0 23 0 0 0 chrX 27420683 27420706 -135179224 + AT_rich Low_complexity Low_complexity 1 23 0 180 231 46 62 chrX 27420838 27420903 -135179027 - MIR SINE MIR -2 260 197 2101 201 19 111 chrX 27420931 27421263 -135178667 - L1MC4 LINE L1 0 8042 7814 2217 86 7 26 chrX 27421263 27421567 -135178363 - AluSx SINE Alu -14 298 1 2101 201 19 111 chrX 27421567 27421970 -135177960 - L1MC4 LINE L1 -228 7814 7375 814 240 106 17 chrX 27421970 27422253 -135177677 + MLT1E1 LTR MaLR 1 289 -365 529 240 32 0 chrX 27422281 27422406 -135177524 + MLT1E3 LTR MaLR 496 624 0 2239 266 74 34 chrX 27422440 27423254 -135176676 - L1MC4a LINE L1 -753 5393 5029 2168 94 40 3 chrX 27423254 27423552 -135176378 + AluSc SINE Alu 1 309 0 2239 266 74 34 chrX 27423552 27424486 -135175444 - L1MC4a LINE L1 -1117 5029 4134 722 254 88 45 chrX 27425529 27425859 -135174071 - MARNA DNA Mariner -202 384 41 244 45 0 45 chrX 27427944 27427988 -135171942 + (GA)n Simple_repeat Simple_repeat 1 42 0 1581 198 0 22 chrX 27428418 27428731 -135171199 + AluJb SINE Alu 1 306 -6 23 0 0 0 chrX 27429649 27429672 -135170258 + AT_rich Low_complexity Low_complexity 1 23 0 180 77 0 0 chrX 27430143 27430169 -135169761 + (TAA)n Simple_repeat Simple_repeat 2 27 0 200 265 102 0 chrX 27430772 27430821 -135169109 - L2 LINE L2 -14 3299 3246 566 292 77 5 chrX 27430879 27431088 -135168842 - LTR16C LTR ERVL -31 460 237 235 262 174 34 chrX 27431442 27431591 -135168339 + MIR SINE MIR 23 192 -70 2076 273 80 44 chrX 27431594 27432417 -135167513 + L2 LINE L2 2236 3088 -225 551 245 155 7 chrX 27432463 27432618 -135167312 + MER5A DNA MER1_type 9 186 -3 450 290 59 16 chrX 27432631 27432817 -135167113 + L2 LINE L2 3120 3313 0 239 196 22 33 chrX 27433519 27433611 -135166319 + (TA)n Simple_repeat Simple_repeat 2 92 0 984 268 62 25 chrX 27433729 27434416 -135165514 + L1ME3A LINE L1 5107 5984 -186 1618 166 7 31 chrX 27434893 27435183 -135164747 + AluJb SINE Alu 1 283 -29 2766 143 39 41 chrX 27435183 27435723 -135164207 + L1MD1 LINE L1 5704 6242 0 2142 108 0 3 chrX 27436130 27436425 -135163505 + AluSx SINE Alu 2 295 -17 325 287 39 12 chrX 27437345 27437555 -135162375 + L1MC/D LINE L1 5663 5879 -242 21 0 0 0 chrX 27438770 27438791 -135161139 + AT_rich Low_complexity Low_complexity 1 21 0 358 380 51 11 chrX 27439051 27439325 -135160605 + L3 LINE CR1 602 886 -691 184 326 132 28 chrX 27439597 27439741 -135160189 - L2 LINE L2 -1 3312 3154 277 329 47 0 chrX 27439750 27439835 -135160095 + L3 LINE CR1 1374 1462 -115 261 163 0 0 chrX 27441176 27441225 -135158705 + (TG)n Simple_repeat Simple_repeat 1 49 0 283 325 148 48 chrX 27441298 27441427 -135158503 + MIR SINE MIR 23 182 -80 1443 214 25 42 chrX 27441427 27441829 -135158101 + MLT2C1 LTR ERVL 1 395 -2 283 325 148 48 chrX 27441829 27441908 -135158022 + MIR SINE MIR 182 252 -10 690 241 86 0 chrX 27443273 27443447 -135156483 + AluJo SINE Alu 85 273 -39 575 162 52 17 chrX 27443451 27443624 -135156306 + GA-rich Low_complexity Low_complexity 2 180 0 34 0 0 0 chrX 27443640 27443674 -135156256 + AT_rich Low_complexity Low_complexity 1 34 0 3931 181 11 16 chrX 27443678 27444373 -135155557 + L1MA4 LINE L1 2 693 -4635 258 136 0 0 chrX 27444393 27444437 -135155493 + (GGA)n Simple_repeat Simple_repeat 3 46 0 5381 210 32 13 chrX 27444437 27446761 -135153169 + L1MA4 LINE L1 680 3046 -3282 932 120 0 40 chrX 27446771 27446921 -135153009 + AluSg/x SINE Alu 154 297 -15 1666 192 3 6 chrX 27446928 27447240 -135152690 + AluJb SINE Alu 1 311 -1 12147 161 24 39 chrX 27447241 27447539 -135152391 + L1MA4 LINE L1 3043 3344 -3138 207 0 0 0 chrX 27447539 27447562 -135152368 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 12147 161 24 39 chrX 27447562 27450598 -135149332 + L1MA4 LINE L1 3344 6322 -160 2282 98 0 16 chrX 27450598 27450914 -135149016 + AluSx SINE Alu 1 311 -1 12147 161 24 39 chrX 27450914 27451067 -135148863 + L1MA4 LINE L1 6322 6476 -6 225 242 5 89 chrX 27452312 27452502 -135147428 + A-rich Low_complexity Low_complexity 5 178 0 2109 192 43 31 chrX 27454193 27454615 -135145315 - MSTA LTR MaLR -1 427 1 341 94 0 31 chrX 27454970 27455034 -135144896 + (CAGAGA)n Simple_repeat Simple_repeat 2 63 0 2695 135 29 27 chrX 27456445 27456678 -135143252 + L1PA16 LINE L1 5694 5925 -241 2050 108 0 27 chrX 27456678 27456973 -135142957 + AluSg SINE Alu 1 287 -23 2695 135 29 27 chrX 27456973 27457202 -135142728 + L1PA16 LINE L1 5925 6157 -9 2012 200 35 71 chrX 27458053 27458572 -135141358 + MLT1D LTR MaLR 1 500 -5 226 213 21 0 chrX 27460000 27460047 -135139883 + (CA)n Simple_repeat Simple_repeat 2 49 0 1897 132 10 3 chrX 27460329 27460625 -135139305 - AluSx SINE Alu -11 301 4 35 0 0 0 chrX 27460654 27460689 -135139241 + AT_rich Low_complexity Low_complexity 1 35 0 380 333 143 22 chrX 27460701 27460974 -135138956 - L2 LINE L2 0 3313 3008 322 208 65 0 chrX 27461540 27461617 -135138313 - L1MA9 LINE L1 -2 6310 6229 1048 261 20 33 chrX 27461617 27461920 -135138010 + MER101B LTR ERV1 1 299 -271 410 136 25 12 chrX 27462076 27462157 -135137773 - L1MA9 LINE L1 -62 6250 6169 720 141 89 0 chrX 27462276 27462411 -135137519 - L1MA9 LINE L1 -119 6193 6047 2291 93 0 0 chrX 27462420 27462721 -135137209 - AluSc SINE Alu -8 301 1 229 326 31 20 chrX 27462992 27463090 -135136840 + MER91A DNA MER1_type 17 115 -81 665 272 40 6 chrX 27463834 27464007 -135135923 + MER5A DNA MER1_type 9 187 -2 225 0 0 0 chrX 27464241 27464266 -135135664 + (T)n Simple_repeat Simple_repeat 1 25 0 286 273 70 70 chrX 27464604 27464732 -135135198 - MER5B DNA MER1_type -50 128 1 528 206 191 0 chrX 27464777 27464908 -135135022 - MER5A DNA MER1_type -1 188 33 205 234 62 16 chrX 27464918 27464982 -135134948 - MER5A DNA MER1_type -2 187 121 383 317 8 8 chrX 27465403 27465523 -135134407 + MIR SINE MIR 143 262 0 476 299 97 19 chrX 27465931 27466138 -135133792 + L2 LINE L2 3005 3227 -86 * 687 261 148 70 chrX 27466136 27466391 -135133539 + L2 LINE L2 2901 3195 -118 934 215 96 40 chrX 27466391 27466745 -135133185 + MLT1A2 LTR MaLR 1 374 0 687 261 148 70 chrX 27466745 27466861 -135133069 + L2 LINE L2 3195 3301 -12 1785 160 0 13 chrX 27466886 27467186 -135132744 + AluJb SINE Alu 1 296 -16 374 233 0 0 chrX 27468052 27468138 -135131792 + L1MC5 LINE L1 7822 7907 -54 252 274 74 22 chrX 27468207 27468342 -135131588 + L1MC4a LINE L1 5772 5913 -1895 607 261 53 83 chrX 27468375 27468639 -135131291 - MIR SINE MIR -5 257 2 362 59 0 0 chrX 27468999 27469050 -135130880 + MADE1 DNA Mariner 29 79 -1 327 146 0 0 chrX 27470556 27470611 -135129319 + (TA)n Simple_repeat Simple_repeat 2 56 0 3471 89 14 12 chrX 27470844 27471351 -135128579 + L1PB2 LINE L1 5642 6149 -2 1926 128 3 20 chrX 27471447 27471751 -135128179 - AluJb SINE Alu -13 299 1 1304 289 80 42 chrX 27471783 27472761 -135127169 - L2 LINE L2 -33 3280 2284 303 246 186 0 chrX 27472811 27472929 -135127001 - L1M4 LINE L1 -695 5489 5350 829 234 57 55 chrX 27473072 27473320 -135126610 + MIR SINE MIR 13 259 -3 221 356 40 20 chrX 27473568 27473717 -135126213 - MIR SINE MIR -2 260 109 2140 13 0 0 chrX 27473771 27474009 -135125921 + AluYb8 SINE Alu 73 310 -8 369 256 0 0 chrX 27474014 27474100 -135125830 + MIR SINE MIR 177 262 0 238 315 141 0 chrX 27474112 27474204 -135125726 - L2 LINE L2 -14 3258 3154 182 317 61 12 chrX 27474306 27474388 -135125542 - L2 LINE L2 0 3313 3228 187 273 114 34 chrX 27474666 27474754 -135125176 - L3b LINE CR1 -2 1581 1487 266 279 89 0 chrX 27475786 27475865 -135124065 - L2 LINE L2 -4 3309 3224 2287 149 70 12 chrX 27476014 27476416 -135123514 + MSTB LTR MaLR 2 426 0 333 276 276 0 chrX 27476429 27476563 -135123367 - MIR SINE MIR -59 203 33 199 361 60 0 chrX 27477161 27477244 -135122686 - L2 LINE L2 -198 3074 2987 1966 199 80 16 chrX 27477470 27477908 -135122022 + MLT1C LTR MaLR 2 467 0 630 259 125 14 chrX 27478028 27478244 -135121686 - MIR SINE MIR -10 252 13 923 317 52 29 chrX 27478399 27478882 -135121048 - L2 LINE L2 -1054 2260 1767 1716 157 35 3 chrX 27478882 27479194 -135120736 + L1MB7 LINE L1 5704 6025 -159 472 171 72 18 chrX 27479194 27479305 -135120625 + MER4A LTR ERV1 1 117 -547 619 229 124 39 chrX 27479450 27479829 -135120101 + MER4C LTR ERV1 257 460 -5 588 174 17 0 chrX 27479830 27479945 -135119985 + L1MB7 LINE L1 6018 6134 -50 1497 203 10 7 chrX 27479946 27480236 -135119694 + AluJo SINE Alu 1 291 -21 28 61 0 0 chrX 27480236 27480285 -135119645 + AT_rich Low_complexity Low_complexity 1 49 0 2141 113 3 3 chrX 27482719 27483029 -135116901 + AluSq SINE Alu 1 310 -3 290 349 78 8 chrX 27483123 27483252 -135116678 + MIR3 SINE MIR 35 172 -36 455 238 36 57 chrX 27483253 27483446 -135116484 + LTR28 LTR ERV1 823 1011 -9 840 228 22 0 chrX 27483805 27483989 -135115941 - MER5A DNA MER1_type 0 189 2 797 148 66 33 chrX 27484714 27484896 -135115034 - MER53 DNA DNA 0 189 2 606 263 26 13 chrX 27485003 27485155 -135114775 + MER5B DNA MER1_type 23 176 -2 784 229 6 6 chrX 27485179 27485354 -135114576 + MER5B DNA MER1_type 1 175 -3 1750 181 0 3 chrX 27485466 27485754 -135114176 - AluJo SINE Alu -23 289 3 3209 115 20 2 chrX 27485794 27486289 -135113641 - L1PA15 LINE L1 -10 6155 5652 316 197 76 0 chrX 27486489 27486555 -135113375 - MER91C DNA MER1_type -32 108 38 819 294 69 26 chrX 27486795 27487211 -135112719 - MLT1F LTR MaLR -81 461 20 2532 230 30 81 chrX 27488845 27490077 -135109853 - L1MA10 LINE L1 -4 6330 5008 2010 143 61 0 chrX 27490862 27491241 -135108689 + L1MA8 LINE L1 5887 6288 -3 652 221 77 99 chrX 27491803 27492025 -135107905 + MER58A DNA MER1_type 2 218 -6 867 150 0 0 chrX 27492025 27492158 -135107772 + FLAM_C SINE Alu 1 133 0 288 23 23 23 chrX 27492245 27492288 -135107642 - MADE1 DNA Mariner 0 80 38 855 138 147 41 chrX 27492573 27492791 -135107139 + L1PA16 LINE L1 5117 5357 -789 557 136 0 11 chrX 27492798 27492886 -135107044 + AluS SINE Alu 1 87 -225 4268 118 93 35 chrX 27492887 27493652 -135106278 + L1PA16 LINE L1 5357 6165 -1 186 43 0 0 chrX 27493724 27493747 -135106183 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 1584 188 0 4 chrX 27493747 27494023 -135105907 - AluJo SINE Alu -32 280 6 272 349 28 28 chrX 27494249 27494358 -135105572 + L2 LINE L2 3205 3313 0 1093 88 0 0 chrX 27495653 27495801 -135104129 - L1PA10 LINE L1 -15 6153 6006 790 256 169 0 chrX 27496528 27496794 -135103136 + Charlie2 DNA MER1_type 8 318 -2544 335 266 62 8 chrX 27496988 27497116 -135102814 + Charlie2 DNA MER1_type 2727 2861 -1 475 192 115 64 chrX 27497122 27497278 -135102652 + MER5B DNA MER1_type 8 171 -7 2175 69 4 4 chrX 27497687 27497962 -135101968 + AluSx SINE Alu 34 308 -4 411 239 18 18 chrX 27498157 27498266 -135101664 - L2 LINE L2 -8 3305 3197 252 184 0 0 chrX 27499207 27499256 -135100674 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 2079 132 0 22 chrX 27499384 27499703 -135100227 + AluSx SINE Alu 1 312 0 25 51 0 0 chrX 27500173 27500212 -135099718 + AT_rich Low_complexity Low_complexity 1 39 0 1098 204 0 5 chrX 27500341 27500537 -135099393 + MER58A DNA MER1_type 11 205 -19 24 0 0 0 chrX 27500652 27500676 -135099254 + AT_rich Low_complexity Low_complexity 1 24 0 399 89 0 0 chrX 27501097 27501153 -135098777 + (TG)n Simple_repeat Simple_repeat 1 56 0 400 245 49 68 chrX 27501627 27501790 -135098140 + MIR SINE MIR 44 203 -59 1826 169 43 27 chrX 27501790 27502158 -135097772 + MLT1A2 LTR MaLR 1 374 0 189 383 133 20 chrX 27502822 27503018 -135096912 + L2 LINE L2 2866 3083 -189 21 36 0 0 chrX 27503787 27503815 -135096115 + AT_rich Low_complexity Low_complexity 1 28 0 245 220 60 0 chrX 27504005 27504055 -135095875 + MER63 DNA MER1_type 1010 1062 0 22 0 0 0 chrX 27504515 27504537 -135095393 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 27506146 27506169 -135093761 + AT_rich Low_complexity Low_complexity 1 23 0 475 156 100 0 chrX 27506355 27506445 -135093485 - AluJ/FLAM SINE Alu -213 99 1 678 255 52 95 chrX 27506450 27506507 -135093423 + MLT1H LTR MaLR 3 61 -488 2225 128 0 0 chrX 27506507 27506819 -135093111 - AluSx SINE Alu 0 312 1 678 255 52 95 chrX 27506819 27507087 -135092843 + MLT1H LTR MaLR 61 314 -235 355 236 72 85 chrX 27507111 27507258 -135092672 + MLT1H LTR MaLR 436 549 0 267 93 0 0 chrX 27507614 27507657 -135092273 + (GA)n Simple_repeat Simple_repeat 1 43 0 1593 205 0 19 chrX 27507988 27508305 -135091625 - AluJo SINE Alu -1 311 1 1046 121 0 12 chrX 27508369 27508534 -135091396 - L1PB1 LINE L1 -3 6148 5986 1460 167 0 0 chrX 27508537 27508794 -135091136 - L1 LINE L1 -1224 4922 4666 681 181 36 18 chrX 27508866 27509032 -135090898 + L1MC4a LINE L1 7640 7808 0 315 0 0 0 chrX 27510853 27510888 -135089042 + (CA)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chrX 27511007 27511027 -135088903 + (A)n Simple_repeat Simple_repeat 1 20 0 377 306 102 42 chrX 27511364 27511626 -135088304 + MLT1H LTR MaLR 50 286 -123 4866 253 52 22 chrX 27511981 27513544 -135086386 + L1MB7 LINE L1 2615 4224 -1922 21 0 0 0 chrX 27513774 27513795 -135086135 + AT_rich Low_complexity Low_complexity 1 21 0 3201 170 40 58 chrX 27515321 27516069 -135083861 + L1MB7 LINE L1 5427 6161 -23 33 80 0 0 chrX 27516756 27516831 -135083099 + AT_rich Low_complexity Low_complexity 1 75 0 536 263 108 44 chrX 27517086 27517496 -135082434 + L1ME LINE L1 5358 5779 -342 274 227 31 31 chrX 27517586 27517683 -135082247 + HAL1b LINE L1 1196 1292 -56 1015 191 30 30 chrX 27517687 27517923 -135082007 + MER106A DNA MER1_type 1 236 0 2127 175 61 51 chrX 27518240 27518749 -135081181 - MER67D LTR ERV1 0 514 1 24 0 0 0 chrX 27520066 27520090 -135079840 + AT_rich Low_complexity Low_complexity 1 24 0 324 238 10 20 chrX 27520102 27520203 -135079727 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 273 163 0 0 chrX 27520252 27520301 -135079629 + (CA)n Simple_repeat Simple_repeat 2 50 0 186 71 0 0 chrX 27520739 27520767 -135079163 + (GA)n Simple_repeat Simple_repeat 1 28 0 664 132 0 62 chrX 27520822 27520951 -135078979 + FLAM_C SINE Alu 9 129 -14 389 70 18 0 chrX 27520952 27521009 -135078921 + (CA)n Simple_repeat Simple_repeat 2 59 0 277 281 16 0 chrX 27521674 27521738 -135078192 + MER5A DNA MER1_type 124 188 -1 1531 179 92 158 chrX 27522785 27523555 -135076375 + LTR8A LTR ERV1 1 719 -8 21 0 0 0 chrX 27523864 27523885 -135076045 + AT_rich Low_complexity Low_complexity 1 21 0 502 328 59 0 chrX 27524161 27524347 -135075583 - MIR SINE MIR -4 258 62 298 318 99 30 chrX 27524385 27524618 -135075312 + MIR SINE MIR 8 256 -6 1950 135 18 0 chrX 27525004 27525285 -135074645 + AluJb SINE Alu 1 286 -26 498 313 45 0 chrX 27525811 27525990 -135073940 + MIR SINE MIR 42 228 -34 2210 192 75 37 chrX 27526121 27526683 -135073247 + MER92B LTR ERV1 2 584 -52 298 246 54 77 chrX 27527025 27527155 -135072775 + MIR SINE MIR 135 261 -1 3279 128 15 89 chrX 27527406 27528065 -135071865 - MER4B LTR ERV1 0 610 1 210 337 96 0 chrX 27528109 27528192 -135071738 - MIR SINE MIR -6 256 166 1139 191 89 36 chrX 27528453 27528989 -135070941 + LTR29 LTR ERV1 1 593 -2 1457 172 11 36 chrX 27529386 27529748 -135070182 + MER61B LTR ERV1 1 425 0 29 28 0 0 chrX 27530024 27530060 -135069870 + AT_rich Low_complexity Low_complexity 1 36 0 447 271 144 44 chrX 27530622 27530982 -135068948 - MLT1J2 LTR MaLR -5 445 71 2343 95 0 0 chrX 27531258 27531554 -135068376 + AluSq SINE Alu 1 296 -17 195 214 89 0 chrX 27531722 27531778 -135068152 - MER5C DNA MER1_type -1 323 263 23 0 0 0 chrX 27532430 27532453 -135067477 + AT_rich Low_complexity Low_complexity 1 23 0 2361 74 0 10 chrX 27532453 27532752 -135067178 + AluSg SINE Alu 1 296 -14 324 0 0 0 chrX 27532752 27532788 -135067142 + (TA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chrX 27533949 27533978 -135065952 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 27534158 27534187 -135065743 + AT_rich Low_complexity Low_complexity 1 29 0 1889 109 47 18 chrX 27534319 27534616 -135065314 - AluSx SINE Alu 0 305 1 2366 89 0 3 chrX 27535160 27535464 -135064466 + AluSg SINE Alu 1 303 -7 233 258 15 0 chrX 27535491 27535557 -135064373 + (TA)n Simple_repeat Simple_repeat 1 67 0 1436 153 0 9 chrX 27536219 27536441 -135063489 - AluJb SINE Alu -91 221 2 1403 151 15 15 chrX 27536501 27536772 -135063158 - L1MB4 LINE L1 0 6180 5910 219 218 0 0 chrX 27536944 27536999 -135062931 + (TA)n Simple_repeat Simple_repeat 1 55 0 22 0 0 54 chrX 27537190 27537206 -135062724 + AT_rich Low_complexity Low_complexity 1 16 -19 2767 16 0 0 chrX 27537206 27537523 -135062407 + L1PA4 LINE L1 5837 6153 -2 22 0 0 54 chrX 27537523 27537543 -135062387 + AT_rich Low_complexity Low_complexity 16 35 0 2499 94 37 3 chrX 27537564 27537916 -135062014 - THE1B LTR MaLR 0 364 1 1219 168 48 81 chrX 27538217 27538551 -135061379 - MER33 DNA MER1_type -1 323 1 2194 123 7 0 chrX 27538590 27538890 -135061040 - AluSx SINE Alu -10 302 1 592 217 0 0 chrX 27539693 27539799 -135060131 - FLAM_C SINE Alu -35 108 3 336 146 37 98 chrX 27539809 27539891 -135060039 + MER74C LTR ERVL 4 80 -380 238 233 0 27 chrX 27540166 27540239 -135059691 - L1MEd LINE L1 -5990 129 59 2269 102 0 3 chrX 27540403 27540697 -135059233 - AluSc SINE Alu -15 294 2 2537 62 3 0 chrX 27540757 27541061 -135058869 + AluSp SINE Alu 1 305 -8 236 265 0 0 chrX 27541062 27541111 -135058819 + MIR SINE MIR 211 259 -3 22 0 0 0 chrX 27541112 27541134 -135058796 + AT_rich Low_complexity Low_complexity 1 22 0 467 275 10 3 chrX 27542007 27542152 -135057778 + MIR SINE MIR 16 160 -59 226 260 58 39 chrX 27543164 27543268 -135056662 + L1ME3A LINE L1 5584 5689 -481 341 261 83 29 chrX 27543290 27543531 -135056399 + L1ME3A LINE L1 5686 5947 -223 362 350 103 27 chrX 27543999 27544251 -135055679 + L3 LINE CR1 713 993 -584 379 89 0 208 chrX 27544251 27544352 -135055578 - MADE1 DNA Mariner 0 80 1 362 350 103 27 chrX 27544352 27544399 -135055531 + L3 LINE CR1 993 1035 -542 3250 200 161 34 chrX 27544411 27544478 -135055452 + L1MCa LINE L1 986 1043 -5383 2489 61 0 0 chrX 27544478 27544771 -135055159 - AluY SINE Alu -18 293 1 3250 200 161 34 chrX 27544771 27545215 -135054715 + L1MCa LINE L1 1043 1429 -4997 2652 42 0 0 chrX 27545215 27545521 -135054409 + AluYa5 SINE Alu 3 308 -3 3250 200 161 34 chrX 27545521 27545669 -135054261 + L1MCa LINE L1 1429 1557 -4869 2309 104 0 0 chrX 27545669 27545977 -135053953 + AluSg SINE Alu 3 310 0 3250 200 161 34 chrX 27545977 27546516 -135053414 + L1MCa LINE L1 1557 2339 -4087 * 9110 188 48 8 chrX 27546515 27547506 -135052424 + L1MC3 LINE L1 5860 6810 -975 210 71 0 0 chrX 27547506 27547534 -135052396 + (CA)n Simple_repeat Simple_repeat 2 29 0 9110 188 48 8 chrX 27547534 27548394 -135051536 + L1MC3 LINE L1 6810 7784 -1 228 308 43 51 chrX 27548536 27548653 -135051277 - L2 LINE L2 -237 3035 2920 1718 101 0 0 chrX 27548755 27548983 -135050947 + AluSq SINE Alu 71 298 -15 379 304 49 54 chrX 27550546 27550730 -135049200 - MIR SINE MIR -66 196 14 2244 96 0 3 chrX 27551038 27551340 -135048590 - AluSg SINE Alu -9 301 1 190 386 0 0 chrX 27555480 27555550 -135044380 - L2 LINE L2 -17 3255 3186 211 312 91 0 chrX 27555625 27555702 -135044228 + MIR SINE MIR 40 123 -139 329 384 113 24 chrX 27556164 27556456 -135043474 - L2 LINE L2 -86 3186 2869 258 364 128 46 chrX 27556507 27556922 -135043008 - L2 LINE L2 -561 2753 2305 207 69 0 0 chrX 27557143 27557172 -135042758 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 352 291 18 112 chrX 27557362 27557458 -135042472 + MIR SINE MIR 17 82 -180 2329 48 14 0 chrX 27557458 27557748 -135042182 + AluY SINE Alu 1 294 -17 352 291 18 112 chrX 27557748 27557874 -135042056 + MIR SINE MIR 82 218 -44 366 357 17 8 chrX 27558905 27559061 -135040869 - MIR3 SINE MIR -54 154 21 2317 104 0 0 chrX 27559689 27559987 -135039943 - AluSq SINE Alu -15 298 1 2429 77 0 0 chrX 27561504 27561804 -135038126 - AluY SINE Alu -11 300 1 2784 161 58 18 chrX 27561930 27562497 -135037433 - L1MB5 LINE L1 0 6174 5585 23 0 0 0 chrX 27562500 27562523 -135037407 + AT_rich Low_complexity Low_complexity 1 23 0 257 181 28 69 chrX 27562643 27562715 -135037215 + L2 LINE L2 3245 3313 0 198 0 0 0 chrX 27562750 27562772 -135037158 + (T)n Simple_repeat Simple_repeat 1 22 0 2113 137 0 0 chrX 27562862 27563168 -135036762 - AluSx SINE Alu -6 306 1 1929 154 3 0 chrX 27564036 27564335 -135035595 + AluJb SINE Alu 1 300 -12 386 221 131 25 chrX 27564337 27564459 -135035471 - L2 LINE L2 0 3313 3179 2875 157 40 10 chrX 27564502 27564551 -135035379 + L1MB4 LINE L1 5442 5488 -692 2215 103 0 10 chrX 27564551 27564853 -135035077 + AluSg1 SINE Alu 1 299 -10 2875 157 40 10 chrX 27564853 27565401 -135034529 + L1MB4 LINE L1 5488 6029 -151 3428 152 43 22 chrX 27564881 27565402 -135034528 + L1MB4 LINE L1 5491 6031 -149 2351 77 7 0 chrX 27565402 27565702 -135034228 - AluSp SINE Alu -7 306 5 3428 152 43 22 chrX 27565702 27565856 -135034074 + L1MB4 LINE L1 6031 6180 0 354 137 0 14 chrX 27565856 27565923 -135034007 + L1MB8 LINE L1 6100 6171 -7 296 301 115 0 chrX 27565961 27566074 -135033856 + L2 LINE L2 2174 2299 -1015 432 140 56 9 chrX 27566217 27566324 -135033606 - MER96B DNA MER1_type? -53 364 253 204 281 7 65 chrX 27566331 27566484 -135033446 + L2 LINE L2 3106 3249 -64 534 285 140 5 chrX 27566566 27566766 -135033164 + LTR33A LTR ERVL 297 523 0 249 266 119 37 chrX 27567545 27567654 -135032276 + MIR SINE MIR 72 189 -73 297 51 0 0 chrX 27568166 27568205 -135031725 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 312 27 0 0 chrX 27569008 27569045 -135030885 + (TA)n Simple_repeat Simple_repeat 2 38 0 1625 203 7 3 chrX 27569045 27569346 -135030584 - AluJb SINE Alu -10 302 1 803 165 0 0 chrX 27569349 27569506 -135030424 - FLAM_C SINE Alu 0 157 1 207 319 62 66 chrX 27569732 27569989 -135029941 + L2 LINE L2 1746 2001 -1313 2388 93 3 0 chrX 27570352 27570662 -135029268 + AluSp SINE Alu 1 311 -2 1092 161 29 33 chrX 27570779 27571021 -135028909 + L1MA5 LINE L1 5819 6059 -241 1174 362 10 24 chrX 27571021 27571606 -135028324 + L1PA13 LINE L1 788 1364 -6210 354 338 11 0 chrX 27571694 27571879 -135028051 + L1PA13 LINE L1 2084 2298 -5276 7670 174 16 196 chrX 27572112 27574206 -135025724 + L1PA16 LINE L1 2182 4650 -2954 1583 177 17 23 chrX 27574206 27574505 -135025425 + AluJb SINE Alu 1 297 -15 7670 174 16 196 chrX 27574505 27575414 -135024516 + L1PA16 LINE L1 4650 5720 -1884 2247 102 0 13 chrX 27575414 27575719 -135024211 + AluSq SINE Alu 2 302 -11 7670 174 16 196 chrX 27575719 27576473 -135023457 + L1PA16 LINE L1 5720 6607 -997 374 141 56 0 chrX 27576473 27576544 -135023386 + AluJ/FRAM SINE Alu 226 300 -2 7670 174 16 196 chrX 27576544 27576873 -135023057 + L1PA16 LINE L1 6607 6993 -611 628 186 23 0 chrX 27576873 27577002 -135022928 + AluJ SINE Alu 2 133 -169 7670 174 16 196 chrX 27577002 27579420 -135020510 + L1PA16 LINE L1 6993 7581 -23 2339 105 0 0 chrX 27579447 27579752 -135020178 + AluSx SINE Alu 1 305 -7 1748 82 4 0 chrX 27579753 27580009 -135019921 + L1MA5 LINE L1 6042 6298 -2 289 216 54 0 chrX 27580060 27580134 -135019796 - L1MC/D LINE L1 -2377 5431 5354 21 36 0 0 chrX 27580831 27580859 -135019071 + AT_rich Low_complexity Low_complexity 1 28 0 564 136 45 98 chrX 27581149 27581281 -135018649 + THE1C LTR MaLR 1 125 -250 240 35 0 0 chrX 27581913 27581942 -135017988 + (CAG)n Simple_repeat Simple_repeat 2 30 0 240 35 0 0 chrX 27582119 27582148 -135017782 + (CA)n Simple_repeat Simple_repeat 2 30 0 826 165 0 0 chrX 27582150 27582283 -135017647 + AluJ SINE Alu 1 133 -169 980 196 0 0 chrX 27582325 27582509 -135017421 + AluJ SINE Alu 129 312 0 1425 173 24 0 chrX 27582615 27582870 -135017060 + MER2 DNA MER2_type 85 345 0 278 160 20 20 chrX 27582873 27582973 -135016957 + (TA)n Simple_repeat Simple_repeat 1 100 0 2102 108 7 0 chrX 27583001 27583334 -135016596 + AluSx SINE Alu 2 336 0 2619 48 3 0 chrX 27584012 27584322 -135015608 + AluY SINE Alu 1 311 0 2208 103 0 29 chrX 27584810 27585122 -135014808 - AluSx SINE Alu -9 303 1 1925 131 44 7 chrX 27585167 27585465 -135014465 - AluJb SINE Alu -3 309 1 1859 143 22 74 chrX 27585997 27586288 -135013642 + MER2 DNA MER2_type 1 271 -73 2248 115 0 13 chrX 27586288 27586600 -135013330 - AluSx SINE Alu -2 310 3 1859 143 22 74 chrX 27586600 27586671 -135013259 + MER2 DNA MER2_type 271 344 0 2414 119 70 5 chrX 27586941 27587343 -135012587 + MSTA LTR MaLR 1 428 0 685 155 81 6 chrX 27587526 27587687 -135012243 + L1MB2 LINE L1 5996 6168 -3 785 268 66 5 chrX 27587772 27587970 -135011960 + MIR SINE MIR 6 215 -47 399 242 48 48 chrX 27588522 27588646 -135011284 - L2 LINE L2 0 3313 3190 279 0 0 0 chrX 27589305 27589336 -135010594 + (TG)n Simple_repeat Simple_repeat 2 32 0 307 260 0 14 chrX 27590068 27590141 -135009789 - L2 LINE L2 -4 3309 3238 616 316 126 5 chrX 27590551 27590766 -135009164 + MIR SINE MIR 16 256 -6 2187 101 0 14 chrX 27591845 27592142 -135007788 - AluSx SINE Alu -19 293 1 1013 133 17 0 chrX 27592145 27592326 -135007604 + L1MA7 LINE L1 6106 6289 -2 228 86 0 0 chrX 27592480 27592515 -135007415 + (CAGAGA)n Simple_repeat Simple_repeat 4 38 0 2027 181 21 7 chrX 27592556 27593193 -135006737 + MER39 LTR ERV1 4 707 0 314 320 91 24 chrX 27593944 27594254 -135005676 + L1M3 LINE L1 5466 5797 -383 240 86 0 0 chrX 27594281 27594316 -135005614 + (TG)n Simple_repeat Simple_repeat 2 36 0 231 218 0 0 chrX 27594354 27594409 -135005521 + (TA)n Simple_repeat Simple_repeat 2 56 0 200 237 0 17 chrX 27594715 27594774 -135005156 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 3168 125 52 24 chrX 27595578 27596115 -135003815 + MER34C LTR ERV1 34 585 0 1338 191 8 129 chrX 27596126 27596483 -135003447 + MER47B DNA MER2_type 1 314 -104 336 278 27 30 chrX 27596646 27596796 -135003134 + MIR SINE MIR 34 184 -67 382 268 52 46 chrX 27596858 27597011 -135002919 + MIR SINE MIR 100 253 -9 22 0 0 0 chrX 27597025 27597047 -135002883 + AT_rich Low_complexity Low_complexity 1 22 0 554 268 47 94 chrX 27598385 27598918 -135001012 + L1MEd LINE L1 488 995 -5124 316 336 45 0 chrX 27599392 27599526 -135000404 - MIR SINE MIR -23 239 100 3139 163 19 36 chrX 27599892 27600507 -134999423 - MER6A DNA MER2_type 0 605 1 297 0 0 0 chrX 27600654 27600687 -134999243 + (TA)n Simple_repeat Simple_repeat 2 34 0 220 259 129 12 chrX 27600744 27600829 -134999101 + L3 LINE CR1 1142 1236 -341 318 322 102 19 chrX 27601086 27601291 -134998639 + L3 LINE CR1 1217 1438 -139 4217 116 8 9 chrX 27601291 27601921 -134998009 + MER39B LTR ERV1 2 630 -23 244 373 97 22 chrX 27602228 27602413 -134997517 + L2 LINE L2 2418 2616 -698 4319 163 10 20 chrX 27602760 27603189 -134996741 + MER44D DNA MER2_type 2 293 -2194 1810 174 3 16 chrX 27603189 27603505 -134996425 + AluJb SINE Alu 1 312 0 4319 163 10 20 chrX 27603505 27603806 -134996124 + MER44D DNA MER2_type 293 596 -9 218 227 40 27 chrX 27604244 27604319 -134995611 - MIR SINE MIR -7 255 180 1038 189 11 0 chrX 27604545 27604736 -134995194 + MLT1D LTR MaLR 1 193 -312 715 289 105 23 chrX 27605382 27605869 -134994061 + L1MC/D LINE L1 5293 5819 -1989 2392 97 0 0 chrX 27605943 27606251 -134993679 + AluSg SINE Alu 1 308 -2 182 37 37 0 chrX 27606968 27606995 -134992935 + (TG)n Simple_repeat Simple_repeat 1 28 0 546 270 26 13 chrX 27608471 27608623 -134991307 + L2 LINE L2 3158 3311 -2 390 21 0 0 chrX 27608719 27608766 -134991164 + (CA)n Simple_repeat Simple_repeat 2 48 0 1227 90 0 0 chrX 27608772 27608927 -134991003 + AluSg SINE Alu 1 155 -155 2402 91 0 0 chrX 27809061 27809369 -134790561 - AluY SINE Alu -3 308 1 221 349 113 21 chrX 27809470 27809851 -134790079 + L2 LINE L2 1931 2346 -968 274 256 66 41 chrX 27809852 27809973 -134789957 - MLT2F LTR ERVL 0 663 540 431 127 0 0 chrX 27810073 27810128 -134789802 - AluSg/x SINE Alu -132 180 126 2359 67 3 7 chrX 27810129 27810427 -134789503 - AluY SINE Alu -14 297 1 1400 192 47 29 chrX 27810441 27810785 -134789145 - MER74A LTR ERVL -197 361 12 186 327 144 10 chrX 27811044 27811148 -134788782 + L2 LINE L2 3154 3271 -1 188 265 0 0 chrX 27811415 27811464 -134788466 - MIR3 SINE MIR -6 202 154 1834 150 23 7 chrX 27811617 27811924 -134788006 - AluJb SINE Alu 0 312 1 295 279 78 31 chrX 27812131 27812260 -134787670 - MER5A DNA MER1_type -6 183 49 217 371 8 23 chrX 27812142 27812274 -134787656 + MER5A DNA MER1_type 35 164 -25 * 1415 140 3 74 chrX 27812932 27813217 -134786713 + AluSc SINE Alu 32 296 -13 713 195 8 0 chrX 27813846 27813964 -134785966 - FLAM_C SINE Alu -23 120 2 2441 167 112 10 chrX 27814103 27814605 -134785325 + MER4D LTR ERV1 1 553 -350 22 77 0 0 chrX 27814608 27814634 -134785296 + AT_rich Low_complexity Low_complexity 1 26 0 225 94 0 0 chrX 27816894 27816926 -134783004 + (T)n Simple_repeat Simple_repeat 1 32 0 1759 70 0 0 chrX 27817042 27817257 -134782673 + AluY SINE Alu 93 307 -4 277 294 73 0 chrX 27817668 27817736 -134782194 + MER91A DNA MER1_type 119 191 -5 337 276 262 13 chrX 27818069 27818294 -134781636 - L2 LINE L2 0 3313 3033 294 73 0 0 chrX 27818462 27818503 -134781427 + (TG)n Simple_repeat Simple_repeat 2 42 0 180 200 0 0 chrX 27819420 27819465 -134780465 + (CCA)n Simple_repeat Simple_repeat 2 46 0 687 271 68 90 chrX 27820370 27820882 -134779048 - MLT1H LTR MaLR -7 542 42 231 327 40 0 chrX 27820953 27821054 -134778876 - MIR SINE MIR -75 187 83 192 383 32 40 chrX 27821553 27821804 -134778126 - L2 LINE L2 -14 3258 3010 341 203 14 0 chrX 27821902 27821971 -134777959 + MLT1J LTR MaLR 397 466 -45 380 146 49 49 chrX 27822731 27822813 -134777117 + L1MC4 LINE L1 7157 7238 -804 360 0 0 0 chrX 27822838 27822878 -134777052 + (GA)n Simple_repeat Simple_repeat 1 40 0 1537 99 0 9 chrX 27823042 27823263 -134776667 + AluSq SINE Alu 85 303 -10 4262 149 44 19 chrX 27823695 27824395 -134775535 + LTR62 LTR ERVK 1 718 -1 414 245 65 116 chrX 27824417 27824633 -134775297 + MLT1H LTR MaLR 231 435 -114 2474 263 76 42 chrX 27825126 27825618 -134774312 + L2 LINE L2 1918 2392 -922 1976 79 4 0 chrX 27825618 27825870 -134774060 - AluSq SINE Alu -3 310 58 2474 263 76 42 chrX 27825870 27825993 -134773937 + L2 LINE L2 2392 2509 -805 2156 159 42 3 chrX 27825993 27826327 -134773603 + MER7A DNA MER2_type 2 346 0 2474 263 76 42 chrX 27826327 27826567 -134773363 + L2 LINE L2 2509 2803 -511 1815 183 86 6 chrX 27826567 27826905 -134773025 + MLT1A1 LTR MaLR 1 365 0 4329 225 59 68 chrX 27826911 27828274 -134771656 + MLT1A1-int LTR MaLR 6 1357 -14 1687 213 18 34 chrX 27828286 27828666 -134771264 + MLT1A2 LTR MaLR 1 374 0 2207 108 0 25 chrX 27830534 27830849 -134769081 - AluSx SINE Alu 0 312 6 396 277 9 0 chrX 27830854 27830966 -134768964 + L1MC4 LINE L1 7806 7918 -124 582 139 55 0 chrX 27830966 27831131 -134768799 + (TA)n Simple_repeat Simple_repeat 2 175 0 1190 304 156 12 chrX 27831335 27832013 -134767917 + L2 LINE L2 1219 1994 -1320 492 197 8 68 chrX 27832017 27832149 -134767781 - L1MC4 LINE L1 0 8042 7919 207 0 0 0 chrX 27832153 27832176 -134767754 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 2733 232 75 33 chrX 27832198 27832365 -134767565 - L1MC4a LINE L1 -650 7158 7000 183 80 0 0 chrX 27832365 27832390 -134767540 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 2733 232 75 33 chrX 27832390 27833050 -134766880 - L1MC4a LINE L1 -808 7000 6296 317 286 0 0 chrX 27833050 27833120 -134766810 - MER63 DNA MER1_type -276 784 715 1022 277 128 45 chrX 27833166 27833870 -134766060 + L2 LINE L2 2528 3313 0 277 294 73 0 chrX 27834203 27834271 -134765659 - MER91A DNA MER1_type -5 191 119 2599 55 0 0 chrX 27834681 27834989 -134764941 - AluY SINE Alu -3 308 1 281 387 67 35 chrX 27835090 27835472 -134764458 + L2 LINE L2 1931 2299 -1015 2617 260 40 19 chrX 27835472 27836121 -134763809 - MLT2F LTR ERVL 0 663 1 281 387 67 35 chrX 27836121 27836515 -134763415 + L2 LINE L2 2299 2732 -582 288 196 52 102 chrX 27836862 27837042 -134762888 + MLT1F LTR MaLR 414 540 -2 249 174 43 0 chrX 27837172 27837218 -134762712 - MIR SINE MIR -157 105 58 1048 212 104 0 chrX 27837413 27837644 -134762286 - MIR SINE MIR 0 262 8 267 398 34 0 chrX 27837746 27837864 -134762066 + L2 LINE L2 3138 3259 -13 522 292 8 8 chrX 27839686 27839816 -134760114 + MER115 DNA AcHobo 8 137 -556 413 172 0 0 chrX 27839889 27839953 -134759977 + MER45B DNA AcHobo 1 64 -976 919 214 31 45 chrX 27839956 27840180 -134759750 - MER45B DNA AcHobo -735 305 85 199 330 45 0 chrX 27840333 27840421 -134759509 + MIR SINE MIR 97 188 -74 1934 74 3 130 chrX 27841158 27841506 -134758424 + AluSp SINE Alu 1 307 0 369 198 159 8 chrX 27841506 27841632 -134758298 - MER5C DNA MER1_type -53 271 127 1821 168 10 0 chrX 27841855 27842158 -134757772 - AluJo SINE Alu -6 306 1 2254 107 0 0 chrX 27843451 27843751 -134756179 - AluSg SINE Alu -10 300 1 27 62 0 0 chrX 27844423 27844471 -134755459 + AT_rich Low_complexity Low_complexity 1 48 0 415 216 54 18 chrX 27844689 27844800 -134755130 - MER5C DNA MER1_type -200 124 10 289 323 127 25 chrX 27844795 27844953 -134754977 + MIR SINE MIR 18 191 -71 * 338 269 0 11 chrX 27844964 27845057 -134754873 - L2 LINE L2 0 3313 3222 443 246 45 0 chrX 27845738 27845848 -134754082 - MER5C DNA MER1_type -200 124 10 312 319 121 13 chrX 27845843 27846000 -134753930 + MIR SINE MIR 18 191 -71 * 489 297 31 5 chrX 27846011 27846203 -134753727 - L2 LINE L2 0 3313 3117 183 162 0 0 chrX 27846463 27846500 -134753430 + (CA)n Simple_repeat Simple_repeat 1 37 0 2290 90 7 3 chrX 27846906 27847206 -134752724 - AluSg SINE Alu -9 301 1 3179 85 17 7 chrX 27848954 27849376 -134750554 - L1PA14 LINE L1 -3 6158 5733 5123 77 67 17 chrX 27850394 27850944 -134748986 - L1PA14 LINE L1 -3 6158 5564 2474 60 7 7 chrX 27850944 27851246 -134748684 - AluY SINE Alu -9 302 1 5123 77 67 17 chrX 27851246 27851396 -134748534 - L1PA14 LINE L1 -597 5564 5423 1783 176 21 21 chrX 27853020 27853360 -134746570 + MER58B DNA MER1_type 1 340 -1 410 200 27 27 chrX 27854643 27854753 -134745177 + MLT1H LTR MaLR 5 114 -435 1966 127 8 0 chrX 27855041 27855309 -134744621 + AluSx SINE Alu 27 296 -16 698 279 74 13 chrX 27855366 27855595 -134744335 + L2 LINE L2 2728 2970 -344 298 143 0 43 chrX 27855606 27855676 -134744254 + (TTCCC)n Simple_repeat Simple_repeat 5 71 0 1085 177 91 8 chrX 27855687 27855930 -134744000 - L1MA7 LINE L1 -1 6290 6028 2075 130 10 0 chrX 27855934 27856242 -134743688 - AluSp SINE Alu 0 313 3 273 279 0 15 chrX 27856289 27856357 -134743573 - MER5B DNA MER1_type -111 67 1 1502 145 54 8 chrX 27856452 27856694 -134743236 - AluJo SINE Alu -59 253 1 914 222 52 12 chrX 27857949 27858197 -134741733 + L1ME3A LINE L1 5904 6161 -9 477 257 9 0 chrX 27859047 27859152 -134740778 + MER5A DNA MER1_type 4 109 -80 1088 184 114 26 chrX 27859153 27859491 -134740439 - MSTD LTR MaLR 0 396 1 3364 205 104 42 chrX 27859491 27860261 -134739669 - MSTD-int LTR MaLR 0 1735 918 2458 197 38 87 chrX 27860282 27860444 -134739486 - MSTD-int LTR MaLR -1056 679 511 2308 101 7 0 chrX 27860444 27860751 -134739179 + AluSc SINE Alu 1 309 0 2458 197 38 87 chrX 27860751 27861300 -134738630 - MSTD-int LTR MaLR -1224 511 3 848 225 162 45 chrX 27861300 27861583 -134738347 - MLT1A2 LTR MaLR -2 372 43 1641 73 13 60 chrX 27861583 27861765 -134738165 - AluSg/x SINE Alu -3 309 139 2368 40 0 40 chrX 27861765 27862069 -134737861 - AluY SINE Alu -19 292 1 1641 73 13 60 chrX 27862069 27862118 -134737812 - AluSg/x SINE Alu -173 139 89 848 225 162 45 chrX 27862118 27862167 -134737763 - MLT1A2 LTR MaLR -331 43 1 203 263 35 18 chrX 27862167 27862224 -134737706 + MER5A DNA MER1_type 129 186 -3 1655 251 95 4 chrX 27863252 27863747 -134736183 - L1ME3A LINE L1 -9 6161 5622 2051 134 3 16 chrX 27865208 27865514 -134734416 + AluJo SINE Alu 1 302 -10 721 183 24 0 chrX 27865681 27865845 -134734085 + L1ME2 LINE L1 5652 5819 -345 542 172 19 1 chrX 27865849 27865963 -134733967 + MER61B LTR ERV1 7 797 -318 1743 173 3 10 chrX 27865975 27866287 -134733643 + MER61B LTR ERV1 102 411 -14 1080 200 65 56 chrX 27866291 27866631 -134733299 + L1ME2 LINE L1 5811 6153 -11 2481 48 6 21 chrX 27867031 27867132 -134732798 - MER51B LTR ERV1 0 377 276 1285 55 12 0 chrX 27867132 27867296 -134732634 - L1PA7 LINE L1 -3 6151 5986 2481 48 6 21 chrX 27867296 27867529 -134732401 - MER51B LTR ERV1 -101 276 48 248 109 236 18 chrX 27867518 27867573 -134732357 - MER51A LTR ERV1 -545 89 23 * 297 219 82 0 chrX 27867574 27867647 -134732283 + LTR16C LTR ERVL 411 489 -2 189 0 0 0 chrX 27867873 27867894 -134732036 + (CA)n Simple_repeat Simple_repeat 1 21 0 2882 168 74 33 chrX 27867962 27868595 -134731335 + L1MB7 LINE L1 5517 6175 -9 296 292 177 9 chrX 27868773 27868886 -134731044 - L2 LINE L2 -1 3271 3140 1484 184 39 33 chrX 27869122 27869481 -134730449 + MER74A LTR ERVL 1 361 -197 2340 67 3 7 chrX 27869495 27869793 -134730137 + AluY SINE Alu 1 297 -14 1361 111 0 11 chrX 27869794 27869983 -134729947 + AluSg/x SINE Alu 126 312 0 752 158 103 18 chrX 27870010 27870175 -134729755 + MER74A LTR ERVL 380 558 0 3759 110 77 5 chrX 27870869 27871470 -134728460 - LTR9B LTR ERV1 0 644 1 243 207 60 95 chrX 27871944 27872060 -134727870 - MIR SINE MIR -66 196 85 791 264 133 42 chrX 27872170 27872598 -134727332 - MLT1H LTR MaLR -4 545 79 4784 104 18 3 chrX 27872723 27873404 -134726526 - LTR8 LTR ERV1 0 691 1 185 266 55 73 chrX 27873652 27873761 -134726169 + MIR SINE MIR 18 124 -84 354 263 195 5 chrX 27875042 27875226 -134724704 + Charlie7 DNA MER1_type 83 305 -2307 556 269 66 22 chrX 27875226 27875477 -134724453 + MLT1H1 LTR MaLR 1 311 -284 542 259 46 51 chrX 27875499 27875684 -134724246 + MLT1G LTR MaLR 418 582 -8 1333 215 84 23 chrX 27875692 27876120 -134723810 + Charlie7 DNA MER1_type 307 760 -1852 310 308 106 0 chrX 27876330 27876434 -134723496 - L1ME3 LINE L1 -79 6083 5969 1140 298 78 3 chrX 27876513 27877086 -134722844 - L1ME3 LINE L1 -211 5959 5344 901 321 42 10 chrX 27877083 27877388 -134722542 - L1ME3 LINE L1 -1350 4796 4502 * 351 0 0 0 chrX 27877388 27877427 -134722503 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 901 321 42 10 chrX 27877427 27877791 -134722139 - L1ME3 LINE L1 -1644 4502 4106 738 261 106 21 chrX 27877800 27878084 -134721846 - MLT1I LTR MaLR -17 392 85 2685 35 3 0 chrX 27878755 27879065 -134720865 - AluY SINE Alu 0 311 1 181 256 190 50 chrX 27879709 27879830 -134720100 + L2 LINE L2 3171 3308 -5 201 74 0 0 chrX 27879992 27880019 -134719911 + (TG)n Simple_repeat Simple_repeat 1 27 0 336 250 141 78 chrX 27880138 27880203 -134719727 - MIR SINE MIR -27 235 175 622 212 118 18 chrX 27880203 27880373 -134719557 - MER5A DNA MER1_type -1 188 2 336 250 141 78 chrX 27880373 27880499 -134719431 - MIR SINE MIR -86 176 32 221 231 91 91 chrX 27881088 27881209 -134718721 - MIR SINE MIR -70 192 72 206 233 0 0 chrX 27881195 27881238 -134718692 + L2 LINE L2 3270 3312 -1 * 190 275 46 107 chrX 27881402 27881533 -134718397 - MIR SINE MIR -14 248 126 341 186 226 16 chrX 27881533 27881657 -134718273 + L1MC4 LINE L1 7524 7673 -369 359 41 20 0 chrX 27881673 27881722 -134718208 + (TCC)n Simple_repeat Simple_repeat 2 51 0 515 261 0 6 chrX 27881722 27881883 -134718047 + L1MC4 LINE L1 7679 7838 -204 1284 128 182 8 chrX 27881885 27882143 -134717787 + MSTD LTR MaLR 1 303 -93 659 254 32 119 chrX 27882146 27882556 -134717374 - L2 LINE L2 -725 2589 2216 336 267 86 0 chrX 27882830 27882935 -134716995 - MIR SINE MIR -70 192 79 1200 226 58 58 chrX 27882938 27883384 -134716546 - LTR16A1 LTR ERVL -11 446 1 192 77 0 0 chrX 27884728 27884754 -134715176 + (T)n Simple_repeat Simple_repeat 1 26 0 237 65 0 0 chrX 27884781 27884812 -134715118 + (TC)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chrX 27885440 27885460 -134714470 + (T)n Simple_repeat Simple_repeat 1 20 0 307 192 27 0 chrX 27885776 27885849 -134714081 - MER116 DNA Mariner 0 80 6 2353 99 33 28 chrX 27885868 27886230 -134713700 - THE1B LTR MaLR 0 364 1 1815 322 103 39 chrX 27886545 27888270 -134711660 + L2 LINE L2 391 2224 -1090 808 251 80 89 chrX 27889825 27890375 -134709555 - MLT1H LTR MaLR -4 545 1 303 262 139 8 chrX 27890393 27890515 -134709415 - MIR SINE MIR -51 211 74 446 276 59 20 chrX 27890692 27890844 -134709086 - MER5A DNA MER1_type -31 158 1 379 339 76 0 chrX 27890927 27891098 -134708832 + MIR SINE MIR 59 242 -20 297 0 0 0 chrX 27891828 27891861 -134708069 + (TG)n Simple_repeat Simple_repeat 2 34 0 219 245 0 0 chrX 27892403 27892452 -134707478 - MIR3 SINE MIR -6 202 154 2044 127 23 7 chrX 27892604 27892911 -134707019 - AluSx SINE Alu 0 312 1 443 309 13 20 chrX 27893132 27893281 -134706649 + MER5A DNA MER1_type 38 185 -4 579 320 22 14 chrX 27893435 27893657 -134706273 + MIR SINE MIR 27 250 -12 4603 191 27 33 chrX 27893711 27894971 -134704959 + L1MD2 LINE L1 5096 6349 -10 4825 125 83 30 chrX 27895140 27895482 -134704448 - MER4D LTR ERV1 0 903 580 2302 101 0 3 chrX 27895482 27895788 -134704142 + AluSg SINE Alu 1 305 -5 4825 125 83 30 chrX 27895788 27896303 -134703627 - MER4D LTR ERV1 -323 580 1 816 151 8 0 chrX 27896441 27896560 -134703370 + FLAM_C SINE Alu 1 120 -23 2166 118 24 0 chrX 27897324 27897621 -134702309 + AluSx SINE Alu 1 304 -8 521 291 42 140 chrX 27897675 27898060 -134701870 + L2 LINE L2 2921 3267 -5 780 249 0 31 chrX 27898110 27898303 -134701627 - MIR SINE MIR -2 260 74 2509 64 0 0 chrX 27898325 27898623 -134701307 - AluY SINE Alu -9 302 5 207 292 0 42 chrX 27899925 27899997 -134699933 + MIR3 SINE MIR 7 75 -133 207 206 123 27 chrX 27900009 27900082 -134699848 + MIR SINE MIR 127 206 -56 605 301 179 40 chrX 27900408 27900856 -134699074 - L3 LINE CR1 -17 1560 1051 641 253 184 0 chrX 27901207 27901397 -134698533 - MIR SINE MIR -15 247 23 236 341 45 30 chrX 27902943 27903075 -134696855 + L2 LINE L2 2625 2758 -556 266 365 185 18 chrX 27903940 27904335 -134695595 + L2 LINE L2 2812 3272 0 2376 79 0 3 chrX 27905299 27905591 -134694339 + AluSq SINE Alu 6 296 -17 804 287 97 10 chrX 27906165 27906465 -134693465 - L2 LINE L2 0 3313 2988 244 220 34 0 chrX 27906480 27906539 -134693391 + MLT1H LTR MaLR 1 61 -488 215 81 54 0 chrX 27906646 27906683 -134693247 + CT-rich Low_complexity Low_complexity 2 40 0 269 241 13 51 chrX 27906683 27906762 -134693168 + MLT1H LTR MaLR 223 298 -251 510 302 0 0 chrX 27906798 27906927 -134693003 - MER58A DNA MER1_type 0 134 6 293 253 21 21 chrX 27906979 27907074 -134692856 + MLT1H LTR MaLR 454 548 -1 1212 309 130 4 chrX 27907077 27907607 -134692323 - L2 LINE L2 -348 2966 2370 236 186 17 0 chrX 27907733 27907792 -134692138 + (TATG)n Simple_repeat Simple_repeat 2 61 0 274 267 0 0 chrX 27907857 27907962 -134691968 - HAL1 LINE L1 -133 2374 2270 21 0 0 0 chrX 27907987 27908008 -134691922 + AT_rich Low_complexity Low_complexity 1 21 0 378 190 72 5 chrX 27908009 27908183 -134691747 - L1MA9 LINE L1 -22 6290 6008 580 215 73 40 chrX 27908190 27908367 -134691563 - L2 LINE L2 -976 2338 2156 2465 166 25 48 chrX 27908368 27908797 -134691133 + L1MA8 LINE L1 5741 6156 -135 3410 37 0 0 chrX 27908797 27909206 -134690724 + L1PA4 LINE L1 5747 6155 0 2465 166 25 48 chrX 27909206 27909335 -134690595 + L1MA8 LINE L1 6156 6286 -5 2172 125 3 3 chrX 27909349 27909653 -134690277 + AluSx SINE Alu 1 304 -8 494 269 6 44 chrX 27909660 27909820 -134690110 - L2 LINE L2 -1170 2144 1991 1067 140 6 17 chrX 27909820 27909998 -134689932 + AluJb SINE Alu 137 312 0 1262 252 33 92 chrX 27910003 27910673 -134689257 - L2 LINE L2 -1360 1954 1325 287 235 49 12 chrX 27910983 27911064 -134688866 + MLT1H LTR MaLR 421 504 -45 1343 174 46 0 chrX 27911070 27911289 -134688641 - MER46A DNA MER2_type -7 229 1 2925 210 52 165 chrX 27911345 27912806 -134687124 - L2 LINE L2 -2006 1308 13 2526 69 0 7 chrX 27915478 27915784 -134684146 + AluSq SINE Alu 1 304 -9 498 277 39 0 chrX 27916702 27916857 -134683073 - Charlie8 DNA MER1_type -2148 269 109 433 288 0 0 chrX 27916870 27917002 -134682928 + L1 LINE L1 2736 2867 -3279 * 2200 129 44 12 chrX 27916996 27917406 -134682524 + L1MA6 LINE L1 4285 4707 -1439 5239 140 38 11 chrX 27917463 27918340 -134681590 + L1MA6 LINE L1 5401 6300 0 3173 187 117 94 chrX 27918362 27918741 -134681189 + L1MC3 LINE L1 6716 7085 -700 259 235 59 35 chrX 27918741 27918826 -134681104 + MLT1J LTR MaLR 35 121 -446 3173 187 117 94 chrX 27918826 27919408 -134680522 + L1MC3 LINE L1 7085 7785 0 437 296 11 0 chrX 27919632 27919808 -134680122 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 527 256 18 0 chrX 27919808 27920044 -134679886 + (CATA)n Simple_repeat Simple_repeat 1 240 0 435 294 0 0 chrX 27920087 27920250 -134679680 + (CATATA)n Simple_repeat Simple_repeat 4 166 0 227 264 111 0 chrX 27920254 27920326 -134679604 - L1MC4 LINE L1 -1347 6695 6616 235 339 0 0 chrX 27920327 27920386 -134679544 + (CA)n Simple_repeat Simple_repeat 1 59 0 229 209 0 0 chrX 27920386 27920429 -134679501 - L1MC4 LINE L1 -1347 6695 6653 * 254 272 0 22 chrX 27920424 27920516 -134679414 + L1MC4 LINE L1 6614 6703 -1339 241 245 0 82 chrX 27920442 27920540 -134679390 - L1MC4 LINE L1 -1339 6703 6614 * 232 275 0 0 chrX 27920517 27920586 -134679344 + L1MC4 LINE L1 6619 6687 -1355 * 264 231 123 0 chrX 27920587 27920652 -134679278 + MLT1J LTR MaLR 239 311 -200 1644 210 52 19 chrX 27920695 27921118 -134678812 - HsTC2 DNA Tc2 0 1898 1286 402 134 49 61 chrX 27921149 27921231 -134678699 - HsTC2 DNA Tc2 -1816 82 2 244 272 40 48 chrX 27921241 27921366 -134678564 + MLT1J LTR MaLR 381 504 -7 188 375 45 0 chrX 27923421 27923509 -134676421 + MIR3 SINE MIR 1 92 -116 195 42 0 0 chrX 27923949 27923973 -134675957 + (CACCC)n Simple_repeat Simple_repeat 5 28 0 327 301 145 64 chrX 27924756 27925115 -134674815 - L1M2 LINE L1 -5607 1242 855 4160 189 61 29 chrX 27925162 27925182 -134674748 - L1MB7 LINE L1 0 6184 6166 2033 107 3 17 chrX 27925182 27925482 -134674448 + AluSg SINE Alu 1 296 -14 4160 189 61 29 chrX 27925482 27927080 -134672850 - L1MB7 LINE L1 -18 6166 4492 203 180 80 20 chrX 27927105 27927155 -134672775 - MER5A DNA MER1_type -96 93 41 1494 169 98 14 chrX 27927405 27927761 -134672169 + LTR37A LTR ERV1 41 426 0 817 294 0 31 chrX 27928799 27929027 -134670903 + LTR33 LTR ERVL 1 221 -300 1913 87 3 66 chrX 27929343 27929632 -134670298 - AluY SINE Alu -9 302 32 290 185 43 98 chrX 27930154 27930246 -134669684 - MLT1I LTR MaLR 0 409 323 45271 40 1 0 chrX 27930246 27936392 -134663538 - L1PA4 LINE L1 -3 6152 1 4086 147 28 6 chrX 27936788 27937435 -134662495 + L1PA16 LINE L1 5506 6166 0 254 268 41 62 chrX 27938050 27938147 -134661783 - L2 LINE L2 -10 3262 3168 495 236 205 92 chrX 27938195 27938682 -134661248 + MLT1G1 LTR MaLR 1 542 0 552 305 107 38 chrX 27939010 27939485 -134660445 - L2 LINE L2 -575 2739 2232 471 198 12 0 chrX 27940683 27940769 -134659161 + MER96 DNA MER1_type? 1 87 -88 815 266 86 33 chrX 27940769 27941073 -134658857 - MLT1I LTR MaLR -83 326 7 3444 139 45 37 chrX 27941166 27941640 -134658290 + MER6A DNA MER2_type 4 473 -392 2016 127 31 0 chrX 27941640 27941931 -134657999 - AluSx SINE Alu -12 300 1 2578 51 0 0 chrX 27941936 27942232 -134657698 - AluY SINE Alu -15 296 1 3444 139 45 37 chrX 27942232 27942348 -134657582 + MER6A DNA MER2_type 476 605 0 2445 186 92 29 chrX 27943609 27943755 -134656175 + L1ME2 LINE L1 5542 5677 -487 1870 154 3 3 chrX 27943755 27944053 -134655877 + AluSx SINE Alu 1 298 -14 2445 186 92 29 chrX 27944053 27944492 -134655438 + L1ME2 LINE L1 5677 6164 0 757 251 182 61 chrX 27945474 27945820 -134654110 + MLT1G1 LTR MaLR 208 595 0 237 256 134 0 chrX 27945890 27945972 -134653958 + MER117 DNA MER1_type 27 119 -78 856 311 25 43 chrX 27945973 27946366 -134653564 + L2 LINE L2 2654 3057 -256 326 220 77 59 chrX 27946371 27946499 -134653431 - MLT1H LTR MaLR -3 546 274 2908 187 94 70 chrX 27946602 27947408 -134652522 - LTR1B LTR ERV1 0 826 1 370 293 88 60 chrX 27947486 27947735 -134652195 + L2 LINE L2 3054 3309 -4 590 275 92 112 chrX 27947899 27948364 -134651566 - LTR16C LTR ERVL -9 482 27 2013 229 25 25 chrX 27948400 27948492 -134651438 - L1ME1 LINE L1 -4 6162 6071 2271 91 14 0 chrX 27948492 27948788 -134651142 + AluSx SINE Alu 1 300 -12 2013 229 25 25 chrX 27948788 27949210 -134650720 - L1ME1 LINE L1 -94 6072 5648 667 195 8 8 chrX 27949218 27949341 -134650589 - MER63 DNA MER1_type -86 750 2 347 202 22 34 chrX 27949349 27949438 -134650492 - L1ME1 LINE L1 -479 5642 5555 3647 122 19 12 chrX 27949468 27950035 -134649895 + L1PA16 LINE L1 5455 6025 -141 2193 196 97 135 chrX 27950099 27951057 -134648873 - LTR28 LTR ERV1 0 1020 2 328 245 128 31 chrX 27951416 27951576 -134648354 - L1ME LINE L1 -340 5822 5634 208 245 198 19 chrX 27951747 27951853 -134648077 + L2 LINE L2 3179 3303 -10 1102 292 62 21 chrX 27952190 27952608 -134647322 - LTR16A LTR ERVL 0 450 16 1971 154 3 3 chrX 27953880 27954186 -134645744 + AluJb SINE Alu 1 306 -6 1660 164 23 17 chrX 27954190 27954489 -134645441 + AluJb SINE Alu 5 305 -7 805 245 34 27 chrX 27954597 27954678 -134645252 - LTR67 LTR ERVL 0 557 478 4091 158 80 9 chrX 27954678 27955362 -134644568 + MER44D DNA MER2_type 1 605 0 805 245 34 27 chrX 27955362 27955640 -134644290 - LTR67 LTR ERVL -79 478 154 213 39 0 0 chrX 27955729 27955755 -134644175 + (GA)n Simple_repeat Simple_repeat 1 26 0 304 282 68 39 chrX 27956019 27956225 -134643705 + L1ME LINE L1 5257 5468 -2340 411 294 56 17 chrX 27956872 27957052 -134642878 + L1ME LINE L1 5559 5745 -376 780 157 39 20 chrX 27957153 27957306 -134642624 + L1MA10 LINE L1 6176 6331 -3 397 241 56 138 chrX 27957351 27957422 -134642508 - MIR SINE MIR -15 247 172 1636 173 4 0 chrX 27957422 27957693 -134642237 - AluJb SINE Alu -39 273 2 397 241 56 138 chrX 27957693 27957816 -134642114 - MIR SINE MIR -90 172 69 872 223 4 101 chrX 27957824 27957900 -134642030 + MER58A DNA MER1_type 2 84 -2336 1913 142 0 0 chrX 27957900 27958182 -134641748 + AluJb SINE Alu 19 300 -12 872 223 4 101 chrX 27958182 27958290 -134641640 + MER58A DNA MER1_type 84 159 -2261 2088 174 30 67 chrX 27958290 27958720 -134641210 + MLT2D LTR ERVL 1 414 0 872 223 4 101 chrX 27958720 27958781 -134641149 + MER58A DNA MER1_type 159 224 0 260 358 0 0 chrX 27958785 27958852 -134641078 - MIR SINE MIR -194 68 2 231 245 0 0 chrX 27958854 27958903 -134641027 + L1ME LINE L1 5776 5824 -297 2281 149 69 27 chrX 27958915 27959323 -134640607 + MSTC LTR MaLR 4 428 0 5853 184 94 95 chrX 27959323 27959472 -134640458 + MSTB2-int LTR MaLR 1 149 -1502 1884 134 123 26 chrX 27959472 27959814 -134640116 - THE1C LTR MaLR 0 375 1 5853 184 94 95 chrX 27959814 27961317 -134638613 + MSTB2-int LTR MaLR 149 1651 0 2979 142 34 2 chrX 27961317 27961760 -134638170 + MSTB2 LTR MaLR 1 457 0 443 223 49 18 chrX 27961861 27961998 -134637932 + L1ME4a LINE L1 1197 6097 -14 274 330 121 49 chrX 27962154 27962378 -134637552 + L2 LINE L2 2644 2883 -431 555 199 55 20 chrX 27962760 27962906 -134637024 + MLT1J2 LTR MaLR 9 159 -291 357 211 0 12 chrX 27963002 27963103 -134636827 + MLT1I LTR MaLR 324 404 -5 213 330 122 78 chrX 27963897 27964127 -134635803 + L2 LINE L2 3029 3268 -4 2543 80 0 0 chrX 27964539 27964851 -134635079 + AluSx SINE Alu 1 312 0 520 343 136 27 chrX 27964946 27965284 -134634646 - L3b LINE CR1 -96 1487 1113 2977 272 34 22 chrX 27965424 27966598 -134633332 - L2 LINE L2 -25 3288 2102 560 158 8 75 chrX 27966775 27966895 -134633035 + FLAM_A SINE Alu 8 119 -23 1011 120 27 6 chrX 27966921 27967104 -134632826 + L1MA4A LINE L1 6104 6290 -13 21 0 0 0 chrX 27967104 27967125 -134632805 + AT_rich Low_complexity Low_complexity 1 21 0 824 270 45 65 chrX 27967276 27967694 -134632236 - LTR16A LTR ERVL 0 450 48 2635 187 42 40 chrX 27969376 27970083 -134629847 + L1MC4 LINE L1 7332 8040 -2 685 253 20 81 chrX 27971522 27971964 -134627966 + L1MC4a LINE L1 5597 6011 -1797 23 0 0 0 chrX 27972941 27972964 -134626966 + AT_rich Low_complexity Low_complexity 1 23 0 222 118 0 0 chrX 27973795 27973829 -134626101 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 279 54 0 0 chrX 27974355 27974392 -134625538 + (TG)n Simple_repeat Simple_repeat 2 38 0 278 212 0 24 chrX 27975305 27975390 -134624540 + (CCA)n Simple_repeat Simple_repeat 3 85 0 1018 209 76 4 chrX 27978861 27979086 -134620844 + MIR SINE MIR 17 257 -5 219 88 0 0 chrX 27979732 27979766 -134620164 + (A)n Simple_repeat Simple_repeat 1 34 0 221 207 0 17 chrX 27980765 27980823 -134619107 + CT-rich Low_complexity Low_complexity 4 60 0 268 386 7 39 chrX 27981123 27981276 -134618654 + L2 LINE L2 3121 3268 -4 986 175 22 79 chrX 27982415 27982643 -134617287 - MER58A DNA MER1_type 0 224 10 197 343 14 14 chrX 27983632 27983705 -134616225 + MIR SINE MIR 75 147 -61 369 252 79 0 chrX 27984185 27984324 -134615606 - MER112 DNA MER1_type -41 219 70 231 307 132 9 chrX 27985543 27985657 -134614273 + L2 LINE L2 3125 3252 -20 284 273 80 9 chrX 27986614 27986724 -134613206 + MIR SINE MIR 38 153 -67 2513 77 0 0 chrX 27987350 27987649 -134612281 - AluSg SINE Alu -11 299 1 882 112 7 13 chrX 27987680 27987832 -134612098 + L1MA4A LINE L1 6148 6298 -5 828 142 0 22 chrX 27987834 27987968 -134611962 + FLAM_C SINE Alu 1 131 -2 185 94 31 0 chrX 27989180 27989212 -134610718 + CT-rich Low_complexity Low_complexity 1 33 0 2336 98 0 3 chrX 27989940 27990245 -134609685 - AluY SINE Alu -5 306 3 955 285 60 87 chrX 27990475 27990956 -134608974 - L2 LINE L2 0 3313 2846 253 163 0 0 chrX 27991246 27991289 -134608641 + MLT1H LTR MaLR 507 549 0 1768 130 81 68 chrX 27991368 27991553 -134608377 - THE1C LTR MaLR 0 375 194 576 0 0 0 chrX 27991553 27991617 -134608313 + (GA)n Simple_repeat Simple_repeat 1 64 0 1768 130 81 68 chrX 27991617 27991801 -134608129 - THE1C LTR MaLR -181 194 1 4413 100 10 22 chrX 27992088 27992403 -134607527 + L1PB1 LINE L1 5487 5804 -347 306 0 0 0 chrX 27992403 27992437 -134607493 + (CA)n Simple_repeat Simple_repeat 2 35 0 4413 100 10 22 chrX 27992437 27992794 -134607136 + L1PB1 LINE L1 5804 6151 0 206 241 93 0 chrX 27993740 27993794 -134606136 - L2 LINE L2 -69 3244 3186 2121 107 7 10 chrX 27993837 27994165 -134605765 + AluSx SINE Alu 1 327 0 23 0 0 0 chrX 27994664 27994687 -134605243 + AT_rich Low_complexity Low_complexity 1 23 0 971 245 131 33 chrX 27994824 27995314 -134604616 + L1MC4 LINE L1 7417 7954 -88 23 33 0 0 chrX 27995557 27995587 -134604343 + AT_rich Low_complexity Low_complexity 1 30 0 182 204 20 20 chrX 27995712 27995761 -134604169 + L2 LINE L2 3167 3215 -98 1809 118 84 31 chrX 27996088 27996443 -134603487 + THE1C LTR MaLR 2 375 0 2262 101 0 0 chrX 27998591 27998889 -134601041 - AluSg SINE Alu -12 298 1 279 157 0 0 chrX 28000458 28000509 -134599421 + A-rich Low_complexity Low_complexity 1 51 0 530 296 63 57 chrX 28001180 28001690 -134598240 - L1ME3 LINE L1 -205 5948 5436 396 309 124 35 chrX 28001764 28002562 -134597368 - L1ME3 LINE L1 -813 5316 4448 * 637 265 118 35 chrX 28002559 28003158 -134596772 - L1ME3 LINE L1 -3044 3085 2437 244 239 24 42 chrX 28004680 28004776 -134595154 - L1ME3 LINE L1 -4909 1210 1128 396 302 90 40 chrX 28004801 28005079 -134594851 - L1ME3 LINE L1 -4985 1134 843 2072 97 68 0 chrX 28005114 28005393 -134594537 - AluSq SINE Alu -15 298 1 1903 156 0 20 chrX 28005468 28005769 -134594161 - AluJo SINE Alu -17 295 1 2368 74 10 7 chrX 28007213 28007523 -134592407 - AluY SINE Alu 0 311 1 1728 153 0 50 chrX 28008633 28008933 -134590997 + AluJb SINE Alu 7 291 -21 259 212 30 30 chrX 28009557 28009623 -134590307 + MIR SINE MIR 197 262 0 1952 131 33 36 chrX 28010729 28011034 -134588896 - AluJo SINE Alu -8 304 1 2034 150 20 43 chrX 28011064 28011504 -134588426 + L1MB8 LINE L1 5683 6112 -66 334 198 0 0 chrX 28011528 28011609 -134588321 + L1MB8 LINE L1 6098 6178 0 216 296 25 37 chrX 28012050 28012131 -134587799 - L2 LINE L2 -50 3222 3143 295 260 60 0 chrX 28013509 28013609 -134586321 + MER103 DNA DNA 9 114 -52 424 242 226 16 chrX 28013865 28014055 -134585875 + MIR SINE MIR 15 244 -18 354 394 101 24 chrX 28014862 28015159 -134584771 + L2 LINE L2 2945 3264 -8 198 0 0 0 chrX 28015286 28015308 -134584622 + (A)n Simple_repeat Simple_repeat 1 22 0 2045 132 13 3 chrX 28016063 28016381 -134583549 + THE1B LTR MaLR 1 321 -43 217 77 103 0 chrX 28019097 28019136 -134580794 - L2 LINE L2 0 3313 3271 400 321 101 24 chrX 28020082 28020315 -134579615 + MIR SINE MIR 10 260 -2 25 51 0 0 chrX 28023197 28023236 -134576694 + AT_rich Low_complexity Low_complexity 1 39 0 210 37 0 0 chrX 28025873 28025900 -134574030 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chrX 28029235 28029272 -134570658 + AT_rich Low_complexity Low_complexity 1 37 0 219 36 0 0 chrX 28030753 28030781 -134569149 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 349 301 135 6 chrX 28031838 28032001 -134567929 + MIR SINE MIR 8 191 -71 284 305 176 8 chrX 28032265 28032396 -134567534 - MER5A DNA MER1_type 0 189 37 594 128 0 0 chrX 28032466 28032560 -134567370 - LTR19B LTR ERV1 0 580 487 400 252 47 39 chrX 28032694 28032821 -134567109 + MIR SINE MIR 63 190 -72 345 141 13 115 chrX 28033064 28033142 -134566788 - L2 LINE L2 0 3313 3244 437 237 145 40 chrX 28036258 28036410 -134563520 - MIR3 SINE MIR -3 205 38 21 0 0 0 chrX 28036608 28036629 -134563301 + AT_rich Low_complexity Low_complexity 1 21 0 254 268 102 19 chrX 28036631 28036788 -134563142 - L1MCa LINE L1 -4581 1729 1560 2162 112 3 0 chrX 28036842 28037137 -134562793 - AluSx SINE Alu -16 296 1 6905 11 0 0 chrX 28037273 28038053 -134561877 + L1PA3 LINE L1 5373 6152 -3 280 264 28 31 chrX 28038089 28038270 -134561660 - L1MCa LINE L1 -4995 1315 937 318 284 73 60 chrX 28038404 28038636 -134561294 - L1MCa LINE L1 -5305 1005 771 248 344 19 19 chrX 28038769 28038926 -134561004 - L1MCa LINE L1 -5470 649 493 2978 101 5 5 chrX 28039156 28039594 -134560336 + L1PA13 LINE L1 5720 6157 -6 781 260 134 4 chrX 28039931 28040162 -134559768 + MIR SINE MIR 2 262 0 327 236 38 0 chrX 28040511 28040617 -134559313 - MER103 DNA DNA -8 158 49 639 0 0 0 chrX 28040646 28040717 -134559213 + (GA)n Simple_repeat Simple_repeat 2 72 0 1024 215 14 22 chrX 28040734 28040957 -134558973 + L3b LINE CR1 1227 1447 -136 767 244 32 65 chrX 28042214 28042460 -134557470 + MER8 DNA MER2_type 1 238 -1 261 271 0 0 chrX 28043010 28043069 -134556861 + MER20 DNA MER1_type 1 59 -160 654 141 16 130 chrX 28043490 28043675 -134556255 + MER20 DNA MER1_type 56 219 0 458 129 0 21 chrX 28043675 28043768 -134556162 - L1MD3 LINE L1 -96 7899 7809 240 35 0 0 chrX 28044096 28044125 -134555805 + (TG)n Simple_repeat Simple_repeat 2 30 0 2359 122 5 22 chrX 28044313 28044683 -134555247 + THE1B LTR MaLR 1 364 0 285 303 83 0 chrX 28045537 28045646 -134554284 - MIR3 SINE MIR -4 204 87 1348 260 69 49 chrX 28046337 28046810 -134553120 + L1MC4 LINE L1 7080 7575 -467 1800 109 11 21 chrX 28046810 28047095 -134552835 + AluSx SINE Alu 1 282 -30 1348 260 69 49 chrX 28047095 28047379 -134552551 + L1MC4 LINE L1 7575 7852 -190 351 204 111 0 chrX 28048501 28048609 -134551321 + L1ME1 LINE L1 5928 6047 -119 431 272 6 0 chrX 28048609 28048767 -134551163 + GA-rich Low_complexity Low_complexity 2 160 0 1458 92 11 0 chrX 28049458 28049642 -134550288 + AluSc SINE Alu 1 186 -123 1535 70 5 10 chrX 28049762 28049962 -134549968 + AluSc SINE Alu 111 309 0 680 270 167 14 chrX 28050154 28050376 -134549554 - MIR SINE MIR 0 262 7 374 164 0 0 chrX 28050423 28050484 -134549446 - FRAM/FAM SINE Alu -105 61 1 366 127 0 14 chrX 28050484 28050555 -134549375 + L1MA4 LINE L1 6103 6172 -128 2954 137 29 63 chrX 28050870 28051321 -134548609 + L1MA4 LINE L1 5674 6098 -202 874 227 0 0 chrX 28051321 28051484 -134548446 - FAM SINE Alu -12 163 1 2954 137 29 63 chrX 28051484 28051680 -134548250 + L1MA4 LINE L1 6098 6299 -1 635 201 0 101 chrX 28051734 28051893 -134548037 - Tigger3(Golem) DNA MER2_type -2886 143 1 253 253 93 0 chrX 28052160 28052235 -134547695 + MIR3 SINE MIR 101 182 -26 191 163 47 0 chrX 28053571 28053614 -134546316 + MIR SINE MIR 162 206 -56 1616 155 42 0 chrX 28054145 28054260 -134545670 + AluJo SINE Alu 1 110 -202 498 33 0 0 chrX 28054260 28054320 -134545610 + (CA)n Simple_repeat Simple_repeat 2 61 0 1616 155 42 0 chrX 28054320 28054488 -134545442 + AluJo SINE Alu 110 296 -16 1846 95 32 4 chrX 28055033 28055312 -134544618 + AluSx SINE Alu 22 307 0 314 290 72 36 chrX 28055963 28056101 -134543829 + L1ME LINE L1 5592 5734 -387 2294 97 3 3 chrX 28056101 28056411 -134543519 + AluSx SINE Alu 1 310 -2 2086 105 3 0 chrX 28057718 28058023 -134541907 - AluSx SINE Alu 0 306 1 248 266 44 71 chrX 28058107 28058220 -134541710 + L2 LINE L2 3162 3271 -1 22 0 0 0 chrX 28060368 28060390 -134539540 + AT_rich Low_complexity Low_complexity 1 22 0 2620 92 63 17 chrX 28060576 28060879 -134539051 + L1PA14 LINE L1 5725 6054 -107 820 70 94 8 chrX 28060879 28061007 -134538923 + MER85 DNA T2_type 1 139 0 2620 92 63 17 chrX 28061007 28061117 -134538813 + L1PA14 LINE L1 6054 6157 -4 194 0 39 0 chrX 28065242 28065268 -134534662 + (TA)n Simple_repeat Simple_repeat 1 27 0 333 47 0 0 chrX 28065268 28065311 -134534619 + (TG)n Simple_repeat Simple_repeat 2 44 0 219 258 328 0 chrX 28065739 28065867 -134534063 - MIR3 SINE MIR -3 205 36 2251 181 3 3 chrX 28067533 28067915 -134532015 - MER47B DNA MER2_type -36 382 1 2536 68 0 0 chrX 28068032 28068342 -134531588 - AluY SINE Alu -1 310 1 334 255 29 59 chrX 28071700 28071802 -134528128 - L2 LINE L2 0 3272 3174 630 339 76 22 chrX 28071882 28072384 -134527546 + L2 LINE L2 573 1101 -2213 604 160 21 0 chrX 28072834 28072928 -134527002 + MER8 DNA MER2_type 141 236 -3 219 114 0 0 chrX 28072933 28072968 -134526962 + (CA)n Simple_repeat Simple_repeat 2 36 0 2043 162 15 6 chrX 28072971 28073310 -134526620 + MER7A DNA MER2_type 7 346 0 540 316 212 31 chrX 28073318 28073904 -134526026 + L2 LINE L2 1711 2190 -1082 1319 97 101 42 chrX 28073904 28074121 -134525809 - MER30 DNA MER1_type 0 230 1 540 316 212 31 chrX 28074121 28074682 -134525248 + L2 LINE L2 2190 3101 -171 242 304 0 0 chrX 28074826 28074872 -134525058 + L2 LINE L2 3143 3188 -84 2048 74 78 0 chrX 28074874 28075144 -134524786 + AluSc SINE Alu 1 291 -18 267 283 174 0 chrX 28075311 28075403 -134524527 - MIR SINE MIR -71 137 30 2000 126 0 27 chrX 28076513 28076807 -134523123 - AluJb SINE Alu -26 286 1 285 247 90 0 chrX 28076810 28076899 -134523031 - L1M4 LINE L1 -1332 4814 4718 1758 169 7 17 chrX 28076900 28077202 -134522728 + AluJo SINE Alu 1 299 -13 2117 121 7 3 chrX 28077912 28078217 -134521713 - AluSq SINE Alu -7 306 1 22 80 0 0 chrX 28078665 28078715 -134521215 + AT_rich Low_complexity Low_complexity 1 50 0 279 0 0 0 chrX 28078882 28078913 -134521017 + (TG)n Simple_repeat Simple_repeat 1 31 0 268 258 45 34 chrX 28079226 28079315 -134520615 - MER102b DNA MER1_type 0 341 252 2147 118 0 7 chrX 28079803 28080108 -134519822 + AluSx SINE Alu 1 303 -9 655 196 6 24 chrX 28080464 28080632 -134519298 - L1P LINE L1 -1545 4601 4437 3486 76 2 2 chrX 28080633 28081112 -134518818 + L1PA2 LINE L1 5703 6181 0 22 0 0 0 chrX 28082604 28082626 -134517304 + AT_rich Low_complexity Low_complexity 1 22 0 2289 101 0 7 chrX 28083183 28083480 -134516450 + AluSg SINE Alu 1 295 -15 201 196 59 20 chrX 28084073 28084175 -134515755 + (TA)n Simple_repeat Simple_repeat 2 107 0 610 331 54 48 chrX 28084261 28084414 -134515516 - L2 LINE L2 -1 3312 3161 2147 96 3 14 chrX 28084414 28084707 -134515223 + AluSq SINE Alu 1 290 -23 610 331 54 48 chrX 28084707 28085085 -134514845 - L2 LINE L2 -152 3161 2776 668 252 100 107 chrX 28085092 28085663 -134514267 + HAL1 LINE L1 1 567 -1940 682 283 101 4 chrX 28086737 28086984 -134512946 + MER102b DNA MER1_type 55 325 -16 187 316 0 18 chrX 28087370 28087427 -134512503 - L2 LINE L2 -17 3255 3200 2309 128 105 18 chrX 28087552 28087998 -134511932 - MER31A LTR ERV1 0 485 1 200 189 189 40 chrX 28088342 28088416 -134511514 + L2 LINE L2 3224 3308 -5 390 296 45 45 chrX 28088950 28089173 -134510757 + MLT1J LTR MaLR 287 509 -2 2226 128 0 0 chrX 28090532 28090838 -134509092 - AluSx SINE Alu -6 306 1 184 276 166 21 chrX 28091368 28091513 -134508417 - MIR SINE MIR -72 190 25 355 341 6 57 chrX 28092189 28092365 -134507565 - MIR3 SINE MIR -33 175 9 202 267 67 0 chrX 28093610 28093670 -134506260 - MIR3 SINE MIR -42 166 103 328 288 28 73 chrX 28093722 28093899 -134506031 + MIR SINE MIR 86 254 -8 271 264 233 6 chrX 28094058 28094221 -134505709 + MIR SINE MIR 3 202 -60 2062 144 3 6 chrX 28094793 28095106 -134504824 + AluJb SINE Alu 1 312 0 315 0 0 0 chrX 28095519 28095554 -134504376 + (TG)n Simple_repeat Simple_repeat 2 36 0 566 308 127 28 chrX 28096360 28096714 -134503216 + L1ME LINE L1 5352 5740 -381 424 240 83 15 chrX 28097506 28097675 -134502255 + L1ME4a LINE L1 1162 6094 -5 244 196 0 0 chrX 28098204 28098255 -134501675 - L2 LINE L2 -1 3312 3262 11629 130 19 15 chrX 28098301 28099465 -134500465 + Tigger1 DNA MER2_type 1 1159 -1259 2403 87 0 0 chrX 28099465 28099763 -134500167 + AluSg SINE Alu 1 298 -12 11629 130 19 15 chrX 28099763 28100139 -134499791 + Tigger1 DNA MER2_type 1159 1552 -866 2368 90 0 3 chrX 28100139 28100440 -134499490 + AluSg SINE Alu 1 300 -10 11629 130 19 15 chrX 28100440 28100739 -134499191 + Tigger1 DNA MER2_type 1552 1848 -570 2848 104 29 2 chrX 28100729 28101141 -134498789 + Tigger1 DNA MER2_type 1996 2418 0 * 1465 209 135 52 chrX 28101440 28101923 -134498007 + LTR33A LTR ERVL 1 523 0 1808 105 12 23 chrX 28102073 28102330 -134497600 - AluSx SINE Alu -24 288 35 275 350 113 5 chrX 28102673 28102867 -134497063 - MIR SINE MIR 0 262 48 202 216 39 0 chrX 28103393 28103444 -134496486 + MER5C DNA MER1_type 72 124 -200 2304 98 0 10 chrX 28103621 28103928 -134496002 + AluSc SINE Alu 1 304 -5 229 292 44 9 chrX 28105054 28105167 -134494763 - L1ME4a LINE L1 -2 6119 6003 847 168 0 0 chrX 28105171 28105296 -134494634 + FLAM_C SINE Alu 1 125 -18 2834 195 59 29 chrX 28105989 28106646 -134493284 + L1ME2 LINE L1 5474 6150 -14 1250 136 5 21 chrX 28107115 28107306 -134492624 - MER5A DNA MER1_type 0 189 2 438 221 21 0 chrX 28107581 28107676 -134492254 + MER5A DNA MER1_type 10 106 -83 216 0 0 0 chrX 28113965 28113989 -134485941 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chrX 28114716 28114737 -134485193 + GC_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chrX 28114766 28114819 -134485111 + GC_rich Low_complexity Low_complexity 1 53 0 299 25 25 0 chrX 28114902 28114942 -134484988 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chrX 28115100 28115131 -134484799 + AT_rich Low_complexity Low_complexity 1 31 0 590 181 0 17 chrX 28115265 28115381 -134484549 + MER5A DNA MER1_type 1 114 -75 634 188 8 16 chrX 28115867 28115995 -134483935 - FLAM_A SINE Alu -6 127 1 183 80 0 0 chrX 28117153 28117178 -134482752 + (TTA)n Simple_repeat Simple_repeat 2 26 0 189 351 64 11 chrX 28117270 28117364 -134482566 - MIR SINE MIR -162 100 2 1176 272 97 39 chrX 28117617 28118103 -134481827 + LTR33 LTR ERVL 1 514 -7 511 331 120 36 chrX 28118396 28118757 -134481173 - L2 LINE L2 -455 2859 2431 763 210 72 6 chrX 28118757 28118924 -134481006 - MER5B DNA MER1_type 0 178 1 511 331 120 36 chrX 28118924 28119139 -134480791 - L2 LINE L2 -883 2431 2235 251 230 10 100 chrX 28121603 28121703 -134478227 + MIR SINE MIR 61 151 -111 180 302 40 63 chrX 28122741 28122867 -134477063 - L2 LINE L2 -95 3218 3096 387 0 0 0 chrX 28122957 28123000 -134476930 + (TG)n Simple_repeat Simple_repeat 2 44 0 2196 108 0 7 chrX 28123854 28124160 -134475770 - AluSx SINE Alu -8 304 1 2642 224 85 8 chrX 28124215 28124848 -134475082 + L1ME3A LINE L1 5451 6139 -31 1669 105 39 7 chrX 28124848 28125133 -134474797 - L1MA8 LINE L1 -1 6290 5997 2642 224 85 8 chrX 28125133 28125160 -134474770 + L1ME3A LINE L1 6139 6162 -8 591 198 10 109 chrX 28125542 28125664 -134474266 - MER112 DNA MER1_type -6 254 156 897 130 19 25 chrX 28125664 28125826 -134474104 + L1PA16 LINE L1 6006 6166 0 591 198 10 109 chrX 28125826 28125895 -134474035 - MER112 DNA MER1_type -104 156 82 548 157 41 54 chrX 28127173 28127320 -134472610 + MLT1H LTR MaLR 14 158 -391 353 275 85 59 chrX 28127359 28127595 -134472335 + MLT1H LTR MaLR 249 490 -59 664 204 142 6 chrX 28127628 28127790 -134472140 + MER58C DNA MER1_type 30 213 -2 278 140 18 18 chrX 28127791 28127848 -134472082 + MLT1H LTR MaLR 493 549 0 960 267 37 17 chrX 28128110 28128410 -134471520 + L1ME1 LINE L1 5856 6161 -5 25 0 0 0 chrX 28128411 28128436 -134471494 + AT_rich Low_complexity Low_complexity 1 25 0 566 304 84 22 chrX 28128572 28128799 -134471131 - L3 LINE CR1 -3 1574 1334 679 375 105 5 chrX 28128955 28129366 -134470564 - L3 LINE CR1 -940 637 186 2462 132 0 0 chrX 28131712 28132077 -134467853 - MER47A DNA MER2_type 0 366 2 462 36 0 0 chrX 28132359 28132415 -134467515 + (TTC)n Simple_repeat Simple_repeat 2 57 0 539 202 0 17 chrX 28132418 28132537 -134467393 - FLAM_C SINE Alu -26 117 1 408 55 0 0 chrX 28132627 28132682 -134467248 + (CA)n Simple_repeat Simple_repeat 2 56 0 558 237 199 26 chrX 28134358 28134514 -134465416 + MER5A DNA MER1_type 7 189 0 1744 136 13 52 chrX 28134555 28134865 -134465065 - AluSx SINE Alu -11 301 4 1813 125 93 0 chrX 28136804 28137084 -134462846 + AluSx SINE Alu 6 311 -1 2171 110 0 0 chrX 28137689 28138020 -134461910 - AluSx SINE Alu 0 333 3 24 32 0 0 chrX 28138022 28138053 -134461877 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chrX 28138585 28138608 -134461322 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 687 281 62 62 chrX 28138977 28139315 -134460615 + MER102b DNA MER1_type 4 341 0 583 247 174 7 chrX 28139381 28139668 -134460262 + L1ME3A LINE L1 3429 3763 -2383 2655 247 30 33 chrX 28139689 28140829 -134459101 + L1ME3A LINE L1 4914 6055 -115 264 236 173 0 chrX 28140837 28140947 -134458983 - L1MC4 LINE L1 0 8042 7914 543 24 12 24 chrX 28140965 28141048 -134458882 + (TG)n Simple_repeat Simple_repeat 2 83 0 272 303 23 15 chrX 28141059 28141191 -134458739 + L1ME3 LINE L1 6030 6162 0 874 119 0 73 chrX 28141675 28141826 -134458104 + FLAM_C SINE Alu 1 140 -3 247 288 8 80 chrX 28142039 28142164 -134457766 + MIR SINE MIR 107 222 -40 459 324 100 12 chrX 28142235 28142405 -134457525 + MIR3 SINE MIR 19 203 -5 2432 72 3 0 chrX 28142792 28143096 -134456834 - AluY SINE Alu -6 305 1 366 173 0 0 chrX 28143143 28143218 -134456712 - L1MB7 LINE L1 0 6184 6110 2080 108 24 3 chrX 28143219 28143515 -134456415 - AluSx SINE Alu -10 302 1 180 0 0 0 chrX 28143785 28143805 -134456125 + (T)n Simple_repeat Simple_repeat 1 20 0 272 324 186 20 chrX 28143815 28144019 -134455911 + L3b LINE CR1 1273 1510 -73 468 51 0 0 chrX 28145995 28146054 -134453876 + (CA)n Simple_repeat Simple_repeat 2 60 0 2416 92 0 0 chrX 28147100 28147403 -134452527 + AluSc SINE Alu 1 303 -6 249 233 198 9 chrX 28148265 28148381 -134451549 + L1ME4a LINE L1 5968 6105 -16 394 285 117 31 chrX 28148430 28148799 -134451131 + L1MCa LINE L1 60 228 -5817 2020 141 133 11 chrX 28148905 28149273 -134450657 - MSTA LTR MaLR -15 413 1 209 83 33 33 chrX 28149334 28149394 -134450536 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 1009 216 56 129 chrX 28149512 28150272 -134449658 + L1MCa LINE L1 569 1336 -4905 27 49 0 0 chrX 28150721 28150762 -134449168 + AT_rich Low_complexity Low_complexity 1 41 0 648 317 84 42 chrX 28150828 28151326 -134448604 + L2 LINE L2 2185 2703 -611 189 330 52 31 chrX 28151496 28151593 -134448337 + L2 LINE L2 3174 3272 0 40 0 0 0 chrX 28152205 28152245 -134447685 + AT_rich Low_complexity Low_complexity 1 40 0 433 302 83 6 chrX 28152371 28152540 -134447390 + L2 LINE L2 2170 2351 -963 1255 160 4 16 chrX 28152729 28152979 -134446951 - L1MA7 LINE L1 -1 6290 6044 236 256 22 22 chrX 28153005 28153095 -134446835 + L2 LINE L2 2435 2524 -790 22 56 0 0 chrX 28153831 28153867 -134446063 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chrX 28154576 28154604 -134445326 + AT_rich Low_complexity Low_complexity 1 28 0 1813 142 35 19 chrX 28155519 28155831 -134444099 - MER1B DNA MER1_type 0 339 2 198 0 0 0 chrX 28156230 28156252 -134443678 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 681 209 0 0 chrX 28156254 28156369 -134443561 - FLAM_C SINE Alu -18 115 1 2175 108 3 3 chrX 28156389 28156684 -134443246 - AluSx SINE Alu -15 297 3 26 30 0 0 chrX 28157000 28157033 -134442897 + AT_rich Low_complexity Low_complexity 1 33 0 261 0 0 0 chrX 28157834 28157863 -134442067 + (TC)n Simple_repeat Simple_repeat 1 29 0 228 140 0 35 chrX 28157864 28157921 -134442009 + L1MC4 LINE L1 6648 6702 -1340 1574 187 0 43 chrX 28158186 28158512 -134441418 - AluJb SINE Alu 0 312 1 2016 105 3 7 chrX 28159143 28159439 -134440491 - L1PA8A LINE L1 -1330 4816 4522 * 6722 77 4 0 chrX 28159438 28160723 -134439207 + L1PA8A LINE L1 4815 6104 -27 26 0 0 0 chrX 28160812 28160838 -134439092 + AT_rich Low_complexity Low_complexity 1 26 0 913 195 16 0 chrX 28161187 28161372 -134438558 - L1PB4 LINE L1 -2 6154 5967 2069 133 0 13 chrX 28161474 28161790 -134438140 - AluSx SINE Alu 0 312 1 238 274 83 36 chrX 28161823 28161907 -134438023 + MIR SINE MIR 169 256 -6 342 0 0 0 chrX 28162398 28162436 -134437494 + (GA)n Simple_repeat Simple_repeat 2 39 0 767 172 0 15 chrX 28164291 28164425 -134435505 + FLAM_A SINE Alu 1 132 -1 711 257 8 25 chrX 28164487 28164728 -134435202 - AluSc SINE Alu -11 298 62 1266 118 5 68 chrX 28165544 28165764 -134434166 + AluJo SINE Alu 86 291 -21 219 296 156 29 chrX 28166909 28167056 -134432874 + MIR SINE MIR 15 177 -56 21 0 0 0 chrX 28167303 28167324 -134432606 + AT_rich Low_complexity Low_complexity 1 21 0 225 291 0 0 chrX 28167348 28167403 -134432527 + L3 LINE CR1 1517 1571 -6 2245 141 36 58 chrX 28168485 28168727 -134431203 + MLT1C LTR MaLR 1 230 -237 2247 98 3 0 chrX 28168727 28169022 -134430908 + AluSx SINE Alu 1 296 -16 2245 141 36 58 chrX 28169022 28169227 -134430703 + MLT1C LTR MaLR 230 438 -29 1579 130 79 29 chrX 28169227 28169542 -134430388 + L1MB7 LINE L1 5838 6168 -16 2326 87 0 7 chrX 28169550 28169849 -134430081 + AluSq SINE Alu 3 299 -14 816 229 69 0 chrX 28169862 28170037 -134429893 + L2 LINE L2 2506 2692 -622 527 168 227 0 chrX 28170468 28170587 -134429343 - MER3 DNA MER1_type -63 146 1 720 192 56 0 chrX 28170645 28170770 -134429160 + FLAM_C SINE Alu 2 133 -10 2365 89 0 0 chrX 28222627 28222919 -134377011 - AluSx SINE Alu -20 292 1 548 342 71 43 chrX 28223243 28223705 -134376225 - L2 LINE L2 -583 2731 2257 4779 182 42 2 chrX 28223734 28223881 -134376049 + L1MD1 LINE L1 4897 5037 -1205 1708 71 0 0 chrX 28223881 28224093 -134375837 + AluY SINE Alu 91 302 -9 4779 182 42 2 chrX 28224093 28225209 -134374721 + L1MD1 LINE L1 5037 6214 -28 470 355 47 0 chrX 28225797 28226008 -134373922 + MIR SINE MIR 8 228 -34 197 344 125 10 chrX 28226070 28226166 -134373764 + L2 LINE L2 3139 3245 -27 12393 24 1 0 chrX 28226562 28228799 -134371131 + L1PA3 LINE L1 3914 6155 0 493 280 51 64 chrX 28228833 28229036 -134370894 + LTR16A LTR ERVL 1 205 -245 655 85 108 46 chrX 28229036 28229166 -134370764 - MER85 DNA T2_type -1 138 1 493 280 51 64 chrX 28229166 28229394 -134370536 + LTR16A LTR ERVL 205 428 -22 1788 134 22 9 chrX 28229531 28229851 -134370079 + L1MB2 LINE L1 5847 6170 -1 761 316 76 10 chrX 28231167 28231468 -134368462 + L3 LINE CR1 1253 1573 -4 791 253 41 0 chrX 28231521 28231691 -134368239 + MIR SINE MIR 2 178 -84 3468 58 4 9 chrX 28231691 28232141 -134367789 + LTR7 LTR ERV1 1 448 -2 5623 112 33 4 chrX 28232143 28233586 -134366344 + HERVH LTR ERV1 1 1730 -5983 6788 50 34 0 chrX 28233828 28235209 -134364721 + L1PA7 LINE L1 4727 6154 0 24 0 0 0 chrX 28236766 28236790 -134363140 + AT_rich Low_complexity Low_complexity 1 24 0 540 270 11 11 chrX 28237698 28237872 -134362058 - LTR16A1 LTR ERVL -2 455 282 2189 98 30 3 chrX 28237921 28238217 -134361713 - AluSq SINE Alu -9 304 1 609 259 93 5 chrX 28238251 28238444 -134361486 + MER63A DNA MER1_type 1 210 0 338 261 29 36 chrX 28238444 28238576 -134361354 - LTR16A1 LTR ERVL -276 181 51 783 210 57 0 chrX 28238948 28239124 -134360806 - MER5A DNA MER1_type 0 189 4 23 54 0 0 chrX 28239200 28239237 -134360693 + AT_rich Low_complexity Low_complexity 1 37 0 1883 161 0 0 chrX 28239532 28239817 -134360113 + AluJb SINE Alu 1 285 -27 1789 180 109 0 chrX 28240177 28240561 -134359369 - MSTB1 LTR MaLR 0 432 7 524 294 10 36 chrX 28240831 28241025 -134358905 + MIR SINE MIR 71 259 -3 262 246 43 0 chrX 28241073 28241142 -134358788 + MIR SINE MIR 72 143 -119 489 331 50 11 chrX 28242058 28242239 -134357691 + MIR3 SINE MIR 16 203 -5 2205 96 0 0 chrX 28242957 28243262 -134356668 + AluSx SINE Alu 3 307 0 293 306 43 24 chrX 28243812 28243958 -134355972 - MIR SINE MIR -44 164 15 2221 103 7 10 chrX 28244003 28244304 -134355626 + AluSx SINE Alu 1 300 -12 182 255 0 78 chrX 28245084 28245135 -134354795 - L2 LINE L2 -6 3307 3261 510 154 36 9 chrX 28245367 28245477 -134354453 - AluSg SINE Alu -197 113 1 197 213 75 100 chrX 28245998 28246078 -134353852 + MIR3 SINE MIR 15 92 -116 22 56 0 0 chrX 28246229 28246265 -134353665 + AT_rich Low_complexity Low_complexity 1 36 0 3489 131 21 4 chrX 28246267 28246809 -134353121 - L1PA16 LINE L1 -9 6157 5603 2417 99 0 6 chrX 28246809 28247123 -134352807 - AluSx SINE Alu 0 312 1 3489 131 21 4 chrX 28247123 28247138 -134352792 - L1PA16 LINE L1 -563 5603 5590 426 293 111 33 chrX 28247304 28247485 -134352445 - L2 LINE L2 0 3313 3119 504 0 0 0 chrX 28247783 28247839 -134352091 + (CA)n Simple_repeat Simple_repeat 1 56 0 310 305 62 31 chrX 28247928 28248056 -134351874 + L2 LINE L2 3139 3270 -2 953 261 19 19 chrX 28248364 28248621 -134351309 + MIR SINE MIR 4 260 -2 2297 72 23 7 chrX 28250067 28250372 -134349558 + AluY SINE Alu 1 310 -1 3643 56 2 0 chrX 28252360 28252821 -134347109 + L1PA7 LINE L1 5692 6153 -1 578 289 59 75 chrX 28253199 28253596 -134346334 - L2 LINE L2 -248 3024 2625 2327 80 7 3 chrX 28253662 28253961 -134345969 + AluSc SINE Alu 1 300 -9 276 340 39 39 chrX 28254079 28254285 -134345645 - L2 LINE L2 -2184 1130 925 286 298 218 0 chrX 28254514 28254638 -134345292 - MIR3 SINE MIR -26 182 32 2417 76 7 0 chrX 28255440 28255744 -134344186 - AluSc SINE Alu -3 306 1 994 208 23 14 chrX 28255765 28255981 -134343949 - MER20 DNA MER1_type 0 219 2 288 250 170 18 chrX 28256195 28256307 -134343623 + LTR16B LTR ERVL 323 451 -13 280 145 43 29 chrX 28256532 28256601 -134343329 + MLT1K LTR MaLR 519 588 0 2415 70 7 0 chrX 28256884 28257185 -134342745 + AluY SINE Alu 1 303 -8 230 0 0 103 chrX 28258540 28258579 -134341351 + (A)n Simple_repeat Simple_repeat 1 35 0 258 233 17 0 chrX 28259673 28259733 -134340197 - MIR SINE MIR -1 261 201 682 224 12 0 chrX 28259849 28260019 -134339911 - AluSx SINE Alu -134 178 7 343 322 10 58 chrX 28260439 28260647 -134339283 + MIR3 SINE MIR 1 198 -10 211 219 24 0 chrX 28260751 28260792 -134339138 + L2 LINE L2 3266 3307 -6 1168 136 48 44 chrX 28261742 28261791 -134338139 - L1MB1 LINE L1 0 6168 6121 1912 45 0 41 chrX 28261791 28262034 -134337896 - AluY SINE Alu -15 296 64 1168 136 48 44 chrX 28262034 28262212 -134337718 - L1MB1 LINE L1 -47 6121 5940 1099 295 58 59 chrX 28262994 28263583 -134336347 + L2 LINE L2 2338 2925 -389 954 125 5 26 chrX 28263686 28263902 -134336028 - MER4A LTR ERV1 -134 530 261 650 111 0 10 chrX 28263902 28264001 -134335929 - MER4A LTR ERV1 -566 98 1 227 339 0 0 chrX 28264001 28264063 -134335867 - L3 LINE CR1 -472 1105 1044 1660 188 138 95 chrX 28264509 28265217 -134334713 + LTR1B LTR ERV1 7 745 -81 997 193 6 0 chrX 28265303 28265469 -134334461 + FAM SINE Alu 5 171 -4 872 157 0 0 chrX 28265527 28265648 -134334282 + FLAM_C SINE Alu 1 121 -22 587 233 28 107 chrX 28265864 28266079 -134333851 + MIR SINE MIR 48 245 -17 1062 72 0 0 chrX 28268030 28268169 -134331761 + L1PA14 LINE L1 6021 6159 -2 231 114 0 0 chrX 28268303 28268338 -134331592 + (TAA)n Simple_repeat Simple_repeat 2 36 0 357 276 141 19 chrX 28268396 28268552 -134331378 - MIR SINE MIR -74 188 14 2231 99 0 3 chrX 28268918 28269231 -134330699 - AluSq SINE Alu 0 312 1 2392 74 0 29 chrX 28269232 28269542 -134330388 - AluY SINE Alu -7 304 4 21 0 0 0 chrX 28269704 28269725 -134330205 + AT_rich Low_complexity Low_complexity 1 21 0 649 323 136 3 chrX 28270455 28270771 -134329159 + L3 LINE CR1 1207 1564 -13 243 267 47 23 chrX 28270850 28270936 -134328994 + MIR3 SINE MIR 115 202 -6 672 261 113 0 chrX 28271100 28271295 -134328635 - MIR SINE MIR -6 256 40 465 279 78 25 chrX 28271299 28271503 -134328427 - MER58C DNA MER1_type 0 215 1 497 250 111 17 chrX 28271542 28271722 -134328208 - MIR SINE MIR -7 255 59 429 335 57 11 chrX 28272021 28272197 -134327733 + MIR3 SINE MIR 11 194 -14 180 0 0 0 chrX 28274707 28274727 -134325203 + (T)n Simple_repeat Simple_repeat 1 20 0 521 231 50 0 chrX 28275771 28275892 -134324038 + L2 LINE L2 3187 3313 0 369 0 0 0 chrX 28276371 28276412 -134323518 + (CA)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chrX 28277327 28277351 -134322579 + (A)n Simple_repeat Simple_repeat 1 24 0 2579 13 7 3 chrX 28277465 28277763 -134322167 + AluY SINE Alu 1 299 -12 228 266 0 16 chrX 28278304 28278368 -134321562 - MLT1L LTR MaLR -348 267 205 275 49 24 0 chrX 28278937 28278978 -134320952 + (TC)n Simple_repeat Simple_repeat 1 42 0 2195 114 0 0 chrX 28279098 28279388 -134320542 - AluSx SINE Alu -22 290 1 1307 308 196 20 chrX 28279921 28280812 -134319118 - L2 LINE L2 -256 3057 2001 197 352 24 32 chrX 28281311 28281436 -134318494 - MIR3 SINE MIR -31 177 54 292 355 10 25 chrX 28281486 28281683 -134318247 + MER117 DNA MER1_type 3 196 -1 324 215 0 0 chrX 28281947 28282012 -134317918 + L1MD3 LINE L1 7899 7963 -32 2291 92 0 0 chrX 28282064 28282372 -134317558 - AluSx SINE Alu 0 308 1 206 359 19 10 chrX 28282372 28282475 -134317455 + MIR3 SINE MIR 101 204 -4 1081 268 45 42 chrX 28282559 28282686 -134317244 - L2 LINE L2 -11 3302 3177 2304 82 6 22 chrX 28282686 28283002 -134316928 + AluY SINE Alu 1 311 0 1081 268 45 42 chrX 28283002 28283255 -134316675 - L2 LINE L2 -136 3177 2921 2200 123 0 0 chrX 28283287 28283587 -134316343 + AluSx SINE Alu 1 300 -12 413 256 128 30 chrX 28283603 28283736 -134316194 - MIR3 SINE MIR -42 166 21 394 319 86 0 chrX 28284303 28284419 -134315511 - L2 LINE L2 -2 3270 3145 6079 40 5 4 chrX 28284595 28285338 -134314592 - L1PA5 LINE L1 0 6154 5411 605 121 0 0 chrX 28285361 28285452 -134314478 + L1MA1 LINE L1 6209 6299 -3 1624 137 82 85 chrX 28287016 28287382 -134312548 + MLT1A1 LTR MaLR 1 365 0 324 281 29 88 chrX 28287430 28287704 -134312226 - MIR SINE MIR 0 262 5 810 147 0 7 chrX 28288573 28288716 -134311214 + L1MB7 LINE L1 6027 6168 -16 234 0 0 0 chrX 28289539 28289565 -134310365 + (T)n Simple_repeat Simple_repeat 1 26 0 247 290 203 14 chrX 28290267 28290405 -134309525 + MIR SINE MIR 50 213 -49 462 340 104 5 chrX 28290502 28290714 -134309216 + MIR SINE MIR 27 259 -3 2387 94 0 3 chrX 28290810 28291119 -134308811 - AluSg SINE Alu -2 308 1 472 310 56 29 chrX 28291927 28292253 -134307677 - MLT1L LTR MaLR -73 542 109 1087 139 0 6 chrX 28292599 28292764 -134307166 + FRAM SINE Alu 11 174 -2 602 256 25 19 chrX 28292782 28292942 -134306988 + MER5A DNA MER1_type 29 189 0 2171 91 0 11 chrX 28293068 28293355 -134306575 + AluSx SINE Alu 4 287 -25 26 64 0 0 chrX 28293355 28293402 -134306528 + AT_rich Low_complexity Low_complexity 1 47 0 2132 126 0 16 chrX 28293987 28294304 -134305626 + AluSx SINE Alu 1 312 0 1582 100 14 5 chrX 28295299 28295519 -134304411 + AluSg/x SINE Alu 79 300 -10 805 154 0 31 chrX 28296185 28296315 -134303615 - FLAM_A SINE Alu -7 126 1 262 307 27 0 chrX 28296335 28296410 -134303520 - MIR SINE MIR 0 262 186 489 127 13 0 chrX 28296790 28296869 -134303061 + MADE1 DNA Mariner 1 80 0 30 0 0 0 chrX 28297036 28297066 -134302864 + AT_rich Low_complexity Low_complexity 1 30 0 305 168 19 0 chrX 28297456 28297530 -134302400 + MIR SINE MIR 102 176 -86 * 549 260 33 13 chrX 28297528 28297678 -134302252 - L2 LINE L2 -1 3312 3160 313 247 13 0 chrX 28297658 28297735 -134302195 + MIR SINE MIR 185 262 0 * 268 253 130 62 chrX 28297747 28297893 -134302037 - MIR SINE MIR -99 163 8 400 348 12 30 chrX 28297908 28298072 -134301858 + MER5B DNA MER1_type 18 178 0 207 263 0 18 chrX 28299144 28299201 -134300729 + G-rich Low_complexity Low_complexity 3 58 0 189 0 0 0 chrX 28300344 28300365 -134299565 + (A)n Simple_repeat Simple_repeat 1 21 0 319 151 27 3 chrX 28301310 28301387 -134298543 + AluS SINE Alu 1 57 -251 23 0 0 0 chrX 28301405 28301428 -134298502 + AT_rich Low_complexity Low_complexity 1 23 0 320 254 119 68 chrX 28302447 28302565 -134297365 - L2 LINE L2 0 3313 3190 299 161 0 16 chrX 28302873 28302935 -134296995 + GA-rich Low_complexity Low_complexity 1 61 0 523 209 64 0 chrX 28303026 28303136 -134296794 - L2 LINE L2 0 3313 3197 196 304 13 25 chrX 28303545 28303624 -134296306 + L2 LINE L2 2283 2360 -954 22 35 0 0 chrX 28304500 28304529 -134295401 + AT_rich Low_complexity Low_complexity 1 29 0 636 254 123 42 chrX 28304543 28304779 -134295151 + MIR SINE MIR 8 262 0 2323 123 0 0 chrX 28304822 28305131 -134294799 - AluSx SINE Alu -3 309 1 574 181 141 20 chrX 28305180 28305329 -134294601 - MIR SINE MIR -10 252 86 268 189 0 0 chrX 28305332 28305385 -134294545 - MLT2B1 LTR ERVL -3 517 465 294 164 0 0 chrX 28305385 28305440 -134294490 + (TG)n Simple_repeat Simple_repeat 1 55 0 1283 191 52 53 chrX 28305450 28305849 -134294081 - MLT2B1 LTR ERVL -71 449 1 253 0 54 0 chrX 28305905 28305942 -134293988 + (TC)n Simple_repeat Simple_repeat 2 40 0 369 0 0 0 chrX 28305942 28305983 -134293947 + (CA)n Simple_repeat Simple_repeat 1 41 0 278 301 25 49 chrX 28306028 28306191 -134293739 - L2 LINE L2 -6 3307 3149 1859 125 77 0 chrX 28307144 28307416 -134292514 - AluSx SINE Alu -19 293 1 22 35 0 0 chrX 28307443 28307472 -134292458 + AT_rich Low_complexity Low_complexity 1 29 0 382 141 0 42 chrX 28308313 28308384 -134291546 - U6 snRNA snRNA -35 72 5 5131 136 40 2 chrX 28308535 28309471 -134290459 + L1MA4A LINE L1 5332 6302 -1 2169 106 0 13 chrX 28309543 28309846 -134290084 - AluSx SINE Alu 0 312 14 24 32 0 0 chrX 28309902 28309933 -134289997 + AT_rich Low_complexity Low_complexity 1 31 0 715 211 163 48 chrX 28310186 28310413 -134289517 - MIR SINE MIR -5 257 5 2099 108 3 37 chrX 28311229 28311552 -134288378 + AluSx SINE Alu 1 312 0 629 357 59 0 chrX 28312769 28313091 -134286839 - L2 LINE L2 -1972 1342 1002 396 133 0 0 chrX 28313270 28313353 -134286577 + (TA)n Simple_repeat Simple_repeat 1 83 0 866 286 86 8 chrX 28314173 28314533 -134285397 - LTR16A1 LTR ERVL -68 389 2 2261 104 10 0 chrX 28314638 28315085 -134284845 - AluSq SINE Alu 0 450 1 2247 110 0 0 chrX 28315806 28316105 -134283825 + AluSq SINE Alu 3 301 -12 731 181 0 0 chrX 28316432 28316576 -134283354 + L1MB3 LINE L1 5227 5370 -776 400 154 26 0 chrX 28316575 28316653 -134283277 + L1MB3 LINE L1 5937 6016 -167 * 2155 81 14 20 chrX 28316655 28316950 -134282980 - AluSx SINE Alu -8 304 12 1771 72 5 0 chrX 28317139 28317360 -134282570 + AluSp SINE Alu 66 287 -26 2330 89 10 0 chrX 28317673 28317977 -134281953 + AluY SINE Alu 3 309 -2 280 309 88 55 chrX 28318569 28318750 -134281180 + MLT1L LTR MaLR 91 277 -338 365 295 30 77 chrX 28318765 28318999 -134280931 + L2 LINE L2 2912 3134 -179 250 336 68 27 chrX 28321424 28321570 -134278360 - L3 LINE CR1 -1014 563 412 2135 131 6 10 chrX 28321745 28322057 -134277873 - AluSx SINE Alu -1 311 1 219 69 0 0 chrX 28323238 28323267 -134276663 + (GA)n Simple_repeat Simple_repeat 2 30 0 255 346 19 29 chrX 28323314 28323418 -134276512 - MER91A DNA MER1_type -22 174 72 489 296 116 59 chrX 28323865 28324237 -134275693 - L2 LINE L2 -9 3304 2912 560 132 0 73 chrX 28324237 28324373 -134275557 + FLAM_C SINE Alu 1 126 -17 21 0 0 0 chrX 28324502 28324523 -134275407 + GC_rich Low_complexity Low_complexity 1 21 0 669 107 58 0 chrX 28324556 28324659 -134275271 + AluSc SINE Alu 193 301 -8 1907 91 24 44 chrX 28325371 28325667 -134274263 + AluSx SINE Alu 23 312 0 22 0 0 0 chrX 28326303 28326325 -134273605 + AT_rich Low_complexity Low_complexity 1 22 0 420 206 120 124 chrX 28326950 28327186 -134272744 + MLT1F LTR MaLR 292 513 -29 2296 81 3 7 chrX 28327270 28327566 -134272364 - AluSg SINE Alu -15 295 1 456 192 120 32 chrX 28327582 28327707 -134272223 + L2 LINE L2 3178 3313 0 339 283 65 0 chrX 28327754 28327846 -134272084 + MLT1L LTR MaLR 419 516 -99 2237 166 27 7 chrX 28327896 28328299 -134271631 - MSTB LTR MaLR -15 411 1 316 302 60 9 chrX 28328927 28329043 -134270887 - L2 LINE L2 -219 3053 2932 311 287 35 0 chrX 28329071 28329158 -134270772 - L1MC4 LINE L1 -1339 6703 6614 221 167 19 56 chrX 28329158 28329212 -134270718 + (CA)n Simple_repeat Simple_repeat 2 53 0 186 226 0 57 chrX 28329467 28329520 -134270410 - L2 LINE L2 0 3272 3223 208 53 53 0 chrX 28330525 28330563 -134269367 + (CACAA)n Simple_repeat Simple_repeat 5 44 0 431 368 51 63 chrX 28332523 28333374 -134266556 - L2 LINE L2 -20 3252 2405 1755 212 164 20 chrX 28333374 28333993 -134265937 - LTR68 LTR ERV1 0 740 1 440 178 31 147 chrX 28334618 28334747 -134265183 + MER81 DNA DNA 1 114 0 2687 39 0 0 chrX 28334819 28335124 -134264806 - AluY SINE Alu -6 305 1 274 250 69 0 chrX 28335663 28335735 -134264195 - L2 LINE L2 0 3272 3196 181 292 62 0 chrX 28336722 28336770 -134263160 - MIR SINE MIR -136 126 76 2260 64 4 4 chrX 28336965 28337269 -134262661 - AluSc SINE Alu 0 304 1 2182 79 13 44 chrX 28337315 28337631 -134262299 - AluSx SINE Alu -4 308 3 24726 124 10 71 chrX 28339100 28343991 -134255939 + L1P LINE L1 12 4601 -1545 318 314 14 18 chrX 28345334 28345557 -134254373 + L1ME LINE L1 5547 5768 -353 506 197 182 5 chrX 28347253 28347391 -134252539 + MER5A DNA MER1_type 17 184 -5 356 192 0 0 chrX 28347399 28347472 -134252458 - Charlie5 DNA MER1_type -27 2585 2513 262 108 0 0 chrX 28347504 28347541 -134252389 - Charlie1 DNA MER1_type -872 1889 1853 186 293 49 61 chrX 28348274 28348356 -134251574 - L2 LINE L2 -239 3033 2953 22 0 0 0 chrX 28352120 28352142 -134247788 + AT_rich Low_complexity Low_complexity 1 22 0 1602 99 0 19 chrX 28352476 28352689 -134247241 + AluSx SINE Alu 1 209 -103 337 133 0 17 chrX 28352689 28352739 -134247191 + Alu SINE Alu 250 300 0 186 167 0 0 chrX 28352741 28352777 -134247153 + (TA)n Simple_repeat Simple_repeat 2 37 0 397 256 0 0 chrX 28352777 28352867 -134247063 - L1MC4 LINE L1 -1339 6703 6614 249 33 0 0 chrX 28352897 28352927 -134247003 + (GA)n Simple_repeat Simple_repeat 2 31 0 271 258 32 0 chrX 28352940 28353002 -134246928 - MIR3 SINE MIR -20 188 125 285 109 65 0 chrX 28355415 28355461 -134244469 - MER112 DNA MER1_type -211 49 1 2106 124 10 0 chrX 28355542 28355849 -134244081 + AluSx SINE Alu 1 310 -2 2253 151 20 0 chrX 28356338 28356696 -134243234 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 28356738 28356760 -134243170 + AT_rich Low_complexity Low_complexity 1 22 0 2278 100 7 3 chrX 28356797 28357097 -134242833 + AluSq SINE Alu 1 301 -12 1889 53 4 0 chrX 28357279 28357505 -134242425 + AluSc SINE Alu 83 309 0 689 222 52 0 chrX 28358883 28359036 -134240894 + MER5B DNA MER1_type 18 178 0 1654 204 119 91 chrX 28359861 28360586 -134239344 - LTR1B LTR ERV1 -81 745 1 198 191 0 0 chrX 28360586 28360628 -134239302 + (TAG)n Simple_repeat Simple_repeat 3 44 0 1364 81 14 18 chrX 28360696 28360919 -134239011 - LTR7 LTR ERV1 -2 448 227 1054 194 0 16 chrX 28361638 28361829 -134238101 - MER5A DNA MER1_type -1 188 1 22 35 0 0 chrX 28361859 28361888 -134238042 + AT_rich Low_complexity Low_complexity 1 29 0 2226 118 3 3 chrX 28362628 28362934 -134236996 - AluSx SINE Alu -6 306 1 232 248 40 84 chrX 28363350 28363476 -134236454 + MER5B DNA MER1_type 4 152 -37 336 320 58 10 chrX 28363839 28363942 -134235988 - MIR3 SINE MIR -2 206 99 891 217 20 117 chrX 28364090 28364491 -134235439 + MER57A LTR ERV1 42 403 0 1505 167 14 0 chrX 28365040 28365334 -134234596 + L1 LINE L1 4769 5066 -1080 473 316 19 58 chrX 28366423 28366629 -134233301 - MIR3 SINE MIR -5 203 6 590 203 8 41 chrX 28367096 28367219 -134232711 + L2 LINE L2 3195 3313 0 180 0 0 0 chrX 28368535 28368555 -134231375 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 765 229 33 84 chrX 28368707 28368762 -134231168 + MIR SINE MIR 1 57 -205 2498 71 0 3 chrX 28368762 28369072 -134230858 - AluSc SINE Alu 0 309 1 765 229 33 84 chrX 28369072 28369291 -134230639 + MIR SINE MIR 57 261 -1 401 316 25 32 chrX 28373259 28373471 -134226459 - MIR SINE MIR -50 212 1 2527 60 0 7 chrX 28373647 28373949 -134225981 - AluY SINE Alu -11 300 1 327 49 0 0 chrX 28374378 28374419 -134225511 + (TATAA)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chrX 28374453 28374479 -134225451 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 11232 24 0 0 chrX 28374479 28376557 -134223373 - L1PA3 LINE L1 -7 6148 4072 914 255 31 12 chrX 28376877 28377132 -134222798 - MIR SINE MIR 0 262 3 217 348 127 17 chrX 28377641 28377822 -134222108 + MIR SINE MIR 49 249 -13 519 174 226 37 chrX 28379240 28379430 -134220500 + MER5C DNA MER1_type 64 289 -35 266 303 9 73 chrX 28380326 28380435 -134219495 + MIR SINE MIR 152 253 -9 414 0 0 0 chrX 28381059 28381105 -134218825 + (CA)n Simple_repeat Simple_repeat 2 47 0 318 282 71 31 chrX 28381859 28382001 -134217929 - MIR SINE MIR -77 131 40 1798 122 83 47 chrX 28383329 28383691 -134216239 + THE1C LTR MaLR 1 375 0 2545 49 0 3 chrX 28383815 28384120 -134215810 - AluY SINE Alu -7 304 1 2274 97 0 13 chrX 28384302 28384601 -134215329 - AluSq SINE Alu -16 297 3 2362 171 30 2 chrX 28384994 28385397 -134214533 - Tigger4(Zombi) DNA MER2_type -2317 414 1 326 340 75 34 chrX 28385400 28385547 -134214383 + L2 LINE L2 3161 3313 0 317 267 267 0 chrX 28385859 28385964 -134213966 - MER91C DNA MER1_type -7 133 1 363 267 12 0 chrX 28386120 28386206 -134213724 + MER117 DNA MER1_type 2 88 -109 352 336 148 0 chrX 28386287 28386409 -134213521 - MIR3 SINE MIR -49 159 20 401 307 8 39 chrX 28386826 28386953 -134212977 - L2 LINE L2 -19 3294 3172 180 302 19 0 chrX 28388072 28388125 -134211805 - L2 LINE L2 0 3272 3219 505 222 0 32 chrX 28388125 28388251 -134211679 + MER3 DNA MER1_type 48 122 -87 1474 164 91 40 chrX 28388258 28388373 -134211557 + MER3 DNA MER1_type 2233 2341 -283 3768 57 2 0 chrX 28388373 28388845 -134211085 - L1PA5 LINE L1 0 6154 5682 1474 164 91 40 chrX 28388845 28389102 -134210828 + MER3 DNA MER1_type 2341 2624 0 324 356 54 7 chrX 28389221 28389370 -134210560 - L2 LINE L2 -181 3091 2936 665 260 101 36 chrX 28389386 28389605 -134210325 + MIR SINE MIR 3 235 -27 396 313 17 1 chrX 28389927 28390069 -134209861 + MLT1J2 LTR MaLR 15 157 -289 23 0 0 0 chrX 28390171 28390194 -134209736 + AT_rich Low_complexity Low_complexity 1 23 0 2233 107 7 0 chrX 28390194 28390504 -134209426 - AluSx SINE Alu 0 312 1 275 178 4 141 chrX 28390506 28390700 -134209230 + MLT1J LTR MaLR 287 459 0 2045 105 49 7 chrX 28391090 28391376 -134208554 + AluSg SINE Alu 1 298 -12 1145 212 88 41 chrX 28391481 28391844 -134208086 + MER39 LTR ERV1 325 704 -3 475 285 62 0 chrX 28392849 28392979 -134206951 - MIR SINE MIR -18 244 107 213 237 13 66 chrX 28393205 28393281 -134206649 - MIR SINE MIR -10 252 181 206 32 32 0 chrX 28393922 28393953 -134205977 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 211 322 28 55 chrX 28395043 28395189 -134204741 - MIR3 SINE MIR -48 160 17 611 262 33 22 chrX 28395219 28395402 -134204528 + MER5A DNA MER1_type 1 185 -4 833 162 7 0 chrX 28395582 28395724 -134204206 - FLAM_C SINE Alu 0 143 1 700 248 68 61 chrX 28397855 28397933 -134201997 - LTR16C LTR ERVL -68 423 347 2277 100 7 0 chrX 28397933 28398232 -134201698 + AluSx SINE Alu 1 301 -11 700 248 68 61 chrX 28398232 28398431 -134201499 - LTR16C LTR ERVL -144 347 144 1786 193 0 0 chrX 28399211 28399507 -134200423 - AluJb SINE Alu -16 296 1 368 297 115 14 chrX 28399748 28399896 -134200034 + MIR SINE MIR 18 180 -82 249 33 0 0 chrX 28399950 28399980 -134199950 + (TAG)n Simple_repeat Simple_repeat 3 32 0 787 235 33 0 chrX 28400076 28400259 -134199671 + MER5A DNA MER1_type 1 189 0 487 223 123 0 chrX 28401168 28401298 -134198632 - MER5B DNA MER1_type -8 170 25 29 0 0 0 chrX 28401522 28401551 -134198379 + AT_rich Low_complexity Low_complexity 1 29 0 205 208 0 21 chrX 28401616 28401664 -134198266 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 778 229 23 23 chrX 28402056 28402231 -134197699 + MER63A DNA MER1_type 2 176 -34 22 0 0 0 chrX 28402994 28403016 -134196914 + AT_rich Low_complexity Low_complexity 1 22 0 2413 85 0 0 chrX 28403016 28403322 -134196608 + AluY SINE Alu 1 306 -5 23 0 0 0 chrX 28403728 28403751 -134196179 + AT_rich Low_complexity Low_complexity 1 23 0 430 318 53 0 chrX 28404441 28404573 -134195357 + L2 LINE L2 3129 3267 -5 350 248 215 13 chrX 28405290 28405439 -134194491 - MER5A DNA MER1_type 0 189 11 260 169 0 17 chrX 28405566 28405625 -134194305 + (TA)n Simple_repeat Simple_repeat 1 58 0 2699 23 3 0 chrX 28406597 28406901 -134193029 + AluY SINE Alu 2 306 -5 241 186 0 0 chrX 28406969 28407012 -134192918 + Tigger2 DNA MER2_type 2666 2708 -10 271 325 26 0 chrX 28407447 28407524 -134192406 - MER5A DNA MER1_type -77 112 34 2297 124 8 6 chrX 28407901 28408263 -134191667 + Tigger2 DNA MER2_type 2356 2718 0 22 35 0 0 chrX 28409276 28409305 -134190625 + AT_rich Low_complexity Low_complexity 1 29 0 640 298 66 52 chrX 28409425 28409941 -134189989 - L1MC/D LINE L1 -2029 5779 5257 423 337 18 46 chrX 28410098 28410286 -134189644 - L1MC/D LINE L1 -1118 5028 4850 2297 75 18 0 chrX 28410286 28410596 -134189334 - AluSq SINE Alu 0 315 1 423 337 18 46 chrX 28410596 28410732 -134189198 - L1MC/D LINE L1 -1296 4850 4712 423 274 58 43 chrX 28410960 28411069 -134188861 + L1MC4a LINE L1 5716 5831 -1977 2470 150 58 16 chrX 28411069 28411517 -134188413 + MLT1C LTR MaLR 1 467 0 423 274 58 43 chrX 28411517 28411615 -134188315 + L1MC4a LINE L1 5831 5926 -1882 206 196 18 18 chrX 28411617 28411673 -134188257 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 234 257 59 10 chrX 28411760 28411861 -134188069 + L1MC4a LINE L1 6073 6178 -1630 227 307 53 13 chrX 28412185 28412260 -134187670 + MIR3 SINE MIR 96 173 -35 4947 209 35 58 chrX 28412288 28414148 -134185782 - L1MD1 LINE L1 0 6636 4734 232 278 0 0 chrX 28414148 28414202 -134185728 + Tigger5 DNA MER2_type 2 55 -2268 * 360 206 0 0 chrX 28414176 28414244 -134185686 + Tigger5 DNA MER2_type 2256 2323 0 * 4947 209 35 58 chrX 28414244 28414880 -134185050 - L1MD1 LINE L1 -1944 4692 4109 307 287 11 11 chrX 28414880 28414967 -134184963 - L1MD1 LINE L1 -3090 3450 3364 415 283 99 0 chrX 28414980 28415132 -134184798 - LTR40b LTR ERVL -102 360 194 411 195 46 0 chrX 28415266 28415353 -134184577 - L1MD1 LINE L1 -4545 1995 1905 344 169 135 22 chrX 28415581 28415670 -134184260 + L1MC4 LINE L1 6605 6703 -1339 336 275 0 11 chrX 28415595 28415686 -134184244 - L1MC4 LINE L1 -1339 6703 6614 * 558 229 6 25 chrX 28415701 28415858 -134184072 + LTR37A LTR ERV1 268 421 -5 2272 204 20 6 chrX 28415947 28416441 -134183489 - L1MD3 LINE L1 -85 7910 7410 255 218 103 58 chrX 28416441 28416528 -134183402 - MLT1F1 LTR MaLR -442 125 35 360 0 0 0 chrX 28417283 28417323 -134182607 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chrX 28417464 28417492 -134182438 + AT_rich Low_complexity Low_complexity 1 28 0 229 274 39 0 chrX 28417492 28417543 -134182387 + L2 LINE L2 3134 3186 -86 482 191 106 0 chrX 28417587 28417681 -134182249 - MER3 DNA MER1_type -90 119 16 1169 199 14 0 chrX 28417703 28417919 -134182011 - MER20 DNA MER1_type 0 219 1 1035 103 0 6 chrX 28418021 28418177 -134181753 + L1PA14 LINE L1 6005 6159 -2 1027 293 25 50 chrX 28418434 28418793 -134181137 + LTR16C LTR ERVL 44 393 -98 315 337 70 43 chrX 28418836 28419023 -134180907 - HAL1 LINE L1 -2265 242 51 434 280 129 24 chrX 28419912 28420130 -134179800 - MIR SINE MIR -9 253 17 2428 84 0 0 chrX 28420163 28420471 -134179459 - AluY SINE Alu -3 308 1 898 206 32 9 chrX 28422036 28422254 -134177676 - L1MD3 LINE L1 0 7995 7773 21 0 0 0 chrX 28422255 28422276 -134177654 + AT_rich Low_complexity Low_complexity 1 21 0 1698 82 133 4 chrX 28422782 28423037 -134176893 - AluSg1 SINE Alu -21 288 1 379 251 92 46 chrX 28424233 28424413 -134175517 - MIR3 SINE MIR -63 145 11 268 172 0 0 chrX 28425697 28425755 -134174175 - MER113 DNA MER1_type? -409 112 55 2015 178 80 45 chrX 28425773 28426261 -134173669 - MLT1D LTR MaLR 0 505 1 367 284 90 8 chrX 28426470 28426604 -134173326 + MLT1H LTR MaLR 382 526 -23 183 80 0 0 chrX 28426824 28426849 -134173081 + (TC)n Simple_repeat Simple_repeat 2 26 0 184 327 36 0 chrX 28426932 28426987 -134172943 + L2 LINE L2 3214 3270 -2 673 0 0 0 chrX 28428058 28428136 -134171794 + L1PA3 LINE L1 6075 6152 -3 233 319 198 39 chrX 28428388 28428620 -134171310 - L2 LINE L2 -457 2857 2589 232 319 129 37 chrX 28428620 28428783 -134171147 - MIR SINE MIR -1 261 84 301 365 139 5 chrX 28428845 28429053 -134170877 - L2 LINE L2 -756 2558 2323 288 311 68 47 chrX 28429169 28429490 -134170440 - L2 LINE L2 -998 2316 1989 571 179 32 16 chrX 28429654 28429777 -134170153 - L1PA3 LINE L1 -3 6152 6028 3590 35 0 0 chrX 28429786 28430219 -134169711 - L1PA4 LINE L1 -6 6149 5717 922 60 46 7 chrX 28430219 28430370 -134169560 - L1PA10 LINE L1 -101 6067 5911 1018 153 0 47 chrX 28431378 28431574 -134168356 - AluJo SINE Alu 0 329 140 1814 80 0 0 chrX 28431574 28431798 -134168132 - AluSg/x SINE Alu -16 296 73 1018 153 0 47 chrX 28431798 28431818 -134168112 - AluJo SINE Alu -189 140 121 665 205 0 8 chrX 28431839 28431961 -134167969 - AluJo SINE Alu -191 121 1 362 162 54 40 chrX 28431963 28432037 -134167893 - MER94 DNA DNA -59 75 1 188 273 91 0 chrX 28432202 28432257 -134167673 - L2 LINE L2 -19 3294 3235 348 202 21 11 chrX 28433311 28433405 -134166525 + MER53 DNA DNA 95 189 0 1799 162 0 17 chrX 28433687 28433983 -134165947 - AluJb SINE Alu -21 291 1 23864 31 0 0 chrX 28436798 28439690 -134160240 - L1P LINE L1 -2026 4120 1228 7720 20 0 1 chrX 28439690 28440742 -134159188 + L1HS LINE L1 5105 6155 0 189 0 0 0 chrX 28440747 28440768 -134159162 + (A)n Simple_repeat Simple_repeat 1 21 0 296 341 23 39 chrX 28440899 28441028 -134158902 - L2 LINE L2 -2 3270 3144 8971 21 2 0 chrX 28441834 28442885 -134157045 + L1P LINE L1 4090 5142 -1004 218 179 0 0 chrX 28443040 28443079 -134156851 - L2 LINE L2 -63 3209 3171 1044 308 66 62 chrX 28443786 28444768 -134155162 + L2 LINE L2 1304 2289 -1025 190 302 31 62 chrX 28444775 28444871 -134155059 + L2 LINE L2 2576 2668 -646 * 325 312 33 65 chrX 28444844 28445059 -134154871 + L2 LINE L2 2871 3078 -194 1066 202 0 0 chrX 28446097 28446280 -134153650 + MER5A DNA MER1_type 7 189 0 183 42 0 0 chrX 28446898 28446922 -134153008 + (TA)n Simple_repeat Simple_repeat 1 24 0 214 326 21 11 chrX 28447064 28447159 -134152771 + L2 LINE L2 2934 3029 -243 264 246 36 0 chrX 28447325 28447435 -134152495 + G-rich Low_complexity Low_complexity 2 115 0 450 393 0 16 chrX 28447463 28447646 -134152284 + polypurine Low_complexity Low_complexity 1 180 0 450 228 0 37 chrX 28447646 28447808 -134152122 + G-rich Low_complexity Low_complexity 3 158 0 2008 134 3 10 chrX 28449191 28449496 -134150434 + AluJb SINE Alu 6 308 -4 22 0 0 0 chrX 28449633 28449655 -134150275 + AT_rich Low_complexity Low_complexity 1 22 0 436 248 27 0 chrX 28449888 28450000 -134149930 + MER5A DNA MER1_type 2 104 -74 188 79 53 0 chrX 28450057 28450095 -134149835 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 737 274 17 17 chrX 28450098 28450273 -134149657 + MER5A DNA MER1_type 2 176 -13 251 250 0 0 chrX 28451250 28451302 -134148628 + MARNA DNA Mariner 438 489 -97 1575 114 42 4 chrX 28451348 28451612 -134148318 + L1MA8 LINE L1 6012 6285 -6 316 325 89 46 chrX 28451773 28452075 -134147855 + L2 LINE L2 2038 2352 -962 674 224 44 11 chrX 28452076 28452259 -134147671 + MER5A DNA MER1_type 1 189 0 1743 215 24 100 chrX 28452289 28452837 -134147093 + MER74B LTR ERVL 58 563 -59 225 325 165 34 chrX 28453044 28453250 -134146680 + L2 LINE L2 2542 2774 -540 699 188 7 0 chrX 28453921 28454059 -134145871 + L1PB4 LINE L1 6015 6153 -3 22 0 0 0 chrX 28454239 28454261 -134145669 + AT_rich Low_complexity Low_complexity 1 22 0 1522 172 56 0 chrX 28455121 28455423 -134144507 + MER33 DNA MER1_type 6 324 0 347 313 73 73 chrX 28456069 28456344 -134143586 + L2 LINE L2 2981 3255 -17 228 143 0 36 chrX 28456444 28456500 -134143430 - Charlie5 DNA MER1_type -19 2593 2540 253 82 41 0 chrX 28456502 28456551 -134143379 + (TA)n Simple_repeat Simple_repeat 2 52 0 373 279 44 44 chrX 28457322 28457458 -134142472 - MIR SINE MIR -98 164 29 360 284 0 10 chrX 28457486 28457588 -134142342 + MER5B DNA MER1_type 6 106 -72 928 218 22 53 chrX 28458215 28458440 -134141490 - MER20 DNA MER1_type -1 218 1 183 203 81 68 chrX 28460649 28460723 -134139207 + MIR3 SINE MIR 81 155 -53 520 196 312 0 chrX 28460978 28461116 -134138814 + MER5A DNA MER1_type 9 189 0 500 206 157 94 chrX 28461237 28461460 -134138470 - L2 LINE L2 -2 3311 3075 1689 155 0 67 chrX 28462254 28462570 -134137360 - AluJo SINE Alu -17 295 1 335 227 15 0 chrX 28463541 28463607 -134136323 + L2 LINE L2 3246 3312 -1 1902 151 7 7 chrX 28464077 28464375 -134135555 - AluJb SINE Alu -10 302 5 216 0 0 0 chrX 28464657 28464681 -134135249 + (T)n Simple_repeat Simple_repeat 1 24 0 964 269 76 66 chrX 28464695 28465181 -134134749 + LTR33 LTR ERVL 27 517 -4 282 264 44 22 chrX 28467086 28467177 -134132753 + MLT1H LTR MaLR 82 174 -375 299 191 64 64 chrX 28467357 28467451 -134132479 + MLT1G1 LTR MaLR 487 580 -15 203 239 134 30 chrX 28468473 28468540 -134131390 + MIR3 SINE MIR 125 198 -10 2107 110 51 46 chrX 28470089 28470462 -134129468 + THE1C LTR MaLR 1 375 0 540 252 75 75 chrX 28472785 28473063 -134126867 - MLT1H LTR MaLR -233 316 39 216 67 0 0 chrX 28473654 28473684 -134126246 + (TG)n Simple_repeat Simple_repeat 2 31 0 307 195 41 0 chrX 28474174 28474297 -134125633 + CT-rich Low_complexity Low_complexity 2 129 0 350 274 192 27 chrX 28475285 28475431 -134124499 - MER5A DNA MER1_type -1 188 19 199 340 100 0 chrX 28475457 28475557 -134124373 - MIR SINE MIR -61 147 38 319 113 0 0 chrX 28475682 28475735 -134124195 - L1MB4 LINE L1 0 6180 6128 1339 184 36 0 chrX 28475756 28476006 -134123924 - AluJo SINE Alu -53 259 1 1526 195 34 40 chrX 28476023 28476460 -134123470 - L1MB3 LINE L1 -6 6298 5804 1263 281 157 16 chrX 28477277 28477767 -134122163 + MLT1G1 LTR MaLR 1 595 0 21 0 0 0 chrX 28478928 28478949 -134120981 + AT_rich Low_complexity Low_complexity 1 21 0 635 319 86 0 chrX 28480062 28480294 -134119636 - MIR SINE MIR 0 262 11 502 303 8 0 chrX 28480705 28480827 -134119103 - L2 LINE L2 -1 3312 3190 2302 97 3 0 chrX 28481399 28481708 -134118222 + AluSq SINE Alu 1 310 -3 4759 109 1 1 chrX 28481708 28482393 -134117537 + L1PA15 LINE L1 5481 6165 0 272 270 251 42 chrX 28482767 28482835 -134117095 + MIR SINE MIR 3 55 -207 1251 136 0 114 chrX 28482835 28483099 -134116831 + MER46A DNA MER2_type 1 234 -2 272 270 251 42 chrX 28483099 28483245 -134116685 + MIR SINE MIR 55 262 0 332 281 26 9 chrX 28483390 28483504 -134116426 + MIR SINE MIR 92 207 -55 25 51 0 0 chrX 28483525 28483564 -134116366 + AT_rich Low_complexity Low_complexity 1 39 0 190 268 0 18 chrX 28483673 28483729 -134116201 - MIR SINE MIR -46 216 162 221 394 16 16 chrX 28484092 28484219 -134115711 - L3b LINE CR1 -346 1237 1111 2312 97 0 0 chrX 28484561 28484861 -134115069 - AluSx SINE Alu -12 300 1 494 325 104 67 chrX 28485074 28485613 -134114317 + L2 LINE L2 2182 2740 -574 244 313 218 28 chrX 28485685 28485896 -134114034 - MIR SINE MIR -11 251 1 269 354 0 0 chrX 28485993 28486075 -134113855 + L2 LINE L2 2928 3009 -263 238 360 0 72 chrX 28486275 28486386 -134113544 + L2 LINE L2 3082 3184 -88 313 234 43 60 chrX 28486405 28486442 -134113488 + MER112 DNA MER1_type 42 78 -182 282 73 0 0 chrX 28486442 28486483 -134113447 + (CA)n Simple_repeat Simple_repeat 2 42 0 313 234 43 60 chrX 28486483 28486629 -134113301 + MER112 DNA MER1_type 78 222 -38 807 142 111 42 chrX 28486664 28486854 -134113076 + MLT1A2 LTR MaLR 124 326 -48 229 273 76 0 chrX 28486911 28486977 -134112953 + L2 LINE L2 3201 3271 -1 330 216 0 0 chrX 28486994 28487068 -134112862 + (TA)n Simple_repeat Simple_repeat 1 74 0 2199 58 7 4 chrX 28487398 28487705 -134112225 - AluSc SINE Alu 0 312 5 252 222 0 0 chrX 28489618 28489672 -134110258 + MLT1J1 LTR MaLR 345 398 -48 2184 102 0 0 chrX 28490126 28490432 -134109498 - AluSx SINE Alu 0 306 1 33 0 0 0 chrX 28490477 28490510 -134109420 + AT_rich Low_complexity Low_complexity 1 33 0 291 235 130 52 chrX 28492750 28492865 -134107065 + MIR SINE MIR 19 142 -66 243 0 0 0 chrX 28493063 28493090 -134106840 + (TA)n Simple_repeat Simple_repeat 2 28 0 275 271 0 0 chrX 28493906 28493976 -134105954 + MER116 DNA Mariner 3 72 -8 850 199 94 0 chrX 28495185 28495356 -134104574 + MER5A DNA MER1_type 1 187 -2 1449 217 6 97 chrX 28495401 28495875 -134104055 + LTR16A LTR ERVL 14 444 -6 337 280 10 10 chrX 28497991 28498091 -134101839 - MIR SINE MIR -64 144 45 24 0 0 0 chrX 28498693 28498717 -134101213 + AT_rich Low_complexity Low_complexity 1 24 0 1600 130 46 0 chrX 28499932 28500194 -134099736 + L1PA13 LINE L1 5326 5599 -569 2208 97 6 3 chrX 28500194 28500506 -134099424 + L1PA13 LINE L1 5840 6160 -3 206 308 0 13 chrX 28500635 28500713 -134099217 - MIR SINE MIR -95 167 91 25 51 0 0 chrX 28501873 28501912 -134098018 + AT_rich Low_complexity Low_complexity 1 39 0 927 339 39 6 chrX 28502414 28502777 -134097153 - L3 LINE CR1 -804 773 399 2246 244 80 32 chrX 28503333 28504047 -134095883 + MER20B DNA MER1_type 34 781 -2 2311 77 0 10 chrX 28505371 28505671 -134094259 + AluSg1 SINE Alu 4 300 -9 188 316 88 0 chrX 28508018 28508075 -134091855 + L2 LINE L2 3229 3290 -23 237 330 54 0 chrX 28508508 28508620 -134091310 + MIR SINE MIR 18 135 -73 220 347 80 0 chrX 28509787 28509862 -134090068 - L2 LINE L2 -4 3268 3188 362 268 163 0 chrX 28510197 28510320 -134089610 - L3 LINE CR1 -96 1481 1339 307 0 47 0 chrX 28510389 28510432 -134089498 + (TG)n Simple_repeat Simple_repeat 2 46 0 723 251 26 37 chrX 28510518 28510709 -134089221 - MER5A DNA MER1_type 0 189 1 752 313 53 32 chrX 28510745 28511125 -134088805 + LTR16A LTR ERVL 57 444 -6 930 283 54 7 chrX 28511153 28511429 -134088501 - L3 LINE CR1 -730 847 559 414 0 0 0 chrX 28512767 28512813 -134087117 + (A)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chrX 28513057 28513079 -134086851 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 28513241 28513263 -134086667 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chrX 28513329 28513366 -134086564 + AT_rich Low_complexity Low_complexity 1 37 0 405 0 0 0 chrX 28513577 28513622 -134086308 + (A)n Simple_repeat Simple_repeat 1 45 0 603 107 0 0 chrX 28514539 28514623 -134085307 - AluSg/x SINE Alu -15 294 211 22 0 0 0 chrX 28514909 28514931 -134084999 + AT_rich Low_complexity Low_complexity 1 22 0 1309 154 50 75 chrX 28514931 28515210 -134084720 - AluJo SINE Alu -30 282 11 381 280 98 64 chrX 28515313 28515549 -134084381 - MARNA DNA Mariner -196 390 147 330 338 113 54 chrX 28515915 28516394 -134083536 - L2 LINE L2 -697 2617 2111 2334 258 87 27 chrX 28516435 28517460 -134082470 + L2 LINE L2 2230 3313 0 242 273 0 0 chrX 28517491 28517546 -134082384 - MIR SINE MIR -14 248 194 388 370 82 23 chrX 28517569 28518047 -134081883 - L2 LINE L2 -1273 2041 1536 195 301 0 0 chrX 28518283 28518356 -134081574 + (TA)n Simple_repeat Simple_repeat 2 74 0 2683 88 0 8 chrX 28519505 28519889 -134080041 + L1PA13 LINE L1 5783 6163 0 920 70 86 0 chrX 28520052 28520180 -134079750 + MER85 DNA T2_type 1 139 0 831 194 129 5 chrX 28520283 28520484 -134079446 + MSTD-int LTR MaLR 1510 1735 0 1649 165 113 22 chrX 28520484 28520847 -134079083 + MSTD LTR MaLR 1 396 0 391 335 99 17 chrX 28520872 28521105 -134078825 - L2 LINE L2 -925 2389 2138 382 286 60 38 chrX 28522190 28522375 -134077555 - L2 LINE L2 -6 3307 3119 326 296 0 0 chrX 28524154 28524252 -134075678 + L1ME LINE L1 5571 5668 -453 2440 87 0 0 chrX 28524316 28524625 -134075305 + AluSg1 SINE Alu 1 309 0 30 59 0 0 chrX 28525646 28525697 -134074233 + AT_rich Low_complexity Low_complexity 1 51 0 430 144 156 0 chrX 28525784 28525874 -134074056 + L1MA10 LINE L1 6227 6330 -4 339 85 0 0 chrX 28526665 28526712 -134073218 + (TG)n Simple_repeat Simple_repeat 2 48 0 556 353 35 0 chrX 28527007 28527239 -134072691 + MIR SINE MIR 13 252 -10 222 62 0 0 chrX 28527240 28527272 -134072658 + (CAT)n Simple_repeat Simple_repeat 2 33 0 250 225 28 28 chrX 28527652 28527723 -134072207 + MIR SINE MIR 81 151 -57 1214 235 69 78 chrX 28527930 28528420 -134071510 + LTR33A LTR ERVL 7 492 -31 323 336 107 27 chrX 28528617 28528915 -134071015 + L2 LINE L2 1576 1897 -1417 519 269 107 81 chrX 28528915 28529213 -134070717 + MLT1H LTR MaLR 1 306 -243 238 364 134 5 chrX 28529343 28529552 -134070378 + L2 LINE L2 1914 2149 -1165 21 0 0 0 chrX 28529622 28529643 -134070287 + AT_rich Low_complexity Low_complexity 1 21 0 492 403 24 10 chrX 28529659 28529957 -134069973 + L2 LINE L2 2560 2861 -453 462 352 0 14 chrX 28529964 28530109 -134069821 - MIR3 SINE MIR -56 152 10 660 260 224 18 chrX 28531137 28531476 -134068454 + MLT1I LTR MaLR 1 409 0 3345 199 59 28 chrX 28531920 28532454 -134067476 - L1MB7 LINE L1 -23 6659 6143 1683 105 37 59 chrX 28532454 28532778 -134067152 + L1MA3 LINE L1 5989 6305 0 3345 199 59 28 chrX 28532778 28533374 -134066556 - L1MB7 LINE L1 -539 6143 5492 32 67 0 0 chrX 28533374 28533434 -134066496 + AT_rich Low_complexity Low_complexity 1 60 0 5861 130 20 11 chrX 28533434 28534423 -134065507 - L1MA7 LINE L1 0 6291 5294 5675 211 62 23 chrX 28534420 28535419 -134064511 - L1MB7 LINE L1 -1140 5504 4546 * 946 258 83 40 chrX 28535419 28535865 -134064065 - MLT1C LTR MaLR 0 467 3 2316 90 0 0 chrX 28535869 28536169 -134063761 - AluY SINE Alu -11 300 1 5675 211 62 23 chrX 28536169 28537533 -134062397 - L1MB7 LINE L1 -2100 4544 2974 708 208 58 10 chrX 28537530 28537737 -134062193 - L1MB7 LINE L1 -5072 1470 1254 * 1518 265 42 49 chrX 28537733 28538281 -134061649 - L1MB7 LINE L1 -5905 637 94 1946 154 20 0 chrX 28538289 28538595 -134061335 + AluSx SINE Alu 1 312 0 24 0 0 0 chrX 28538749 28538773 -134061157 + AT_rich Low_complexity Low_complexity 1 24 0 2325 81 0 0 chrX 28540333 28540618 -134059312 - AluSg SINE Alu -25 285 1 22 70 0 0 chrX 28540690 28540733 -134059197 + AT_rich Low_complexity Low_complexity 1 43 0 545 320 89 5 chrX 28541606 28541809 -134058121 + MIR SINE MIR 43 262 0 611 293 104 47 chrX 28542842 28543159 -134056771 + MLT1J2 LTR MaLR 113 447 -3 1416 156 92 50 chrX 28543906 28544188 -134055742 + AluJo SINE Alu 1 294 -18 640 211 124 55 chrX 28545933 28546151 -134053779 + MIR SINE MIR 30 262 0 385 324 14 22 chrX 28546388 28546527 -134053403 - MIR SINE MIR -98 164 27 506 322 50 6 chrX 28546745 28546925 -134053005 + MIR SINE MIR 75 262 0 284 298 73 116 chrX 28547566 28547895 -134052035 - L2 LINE L2 -1 3271 2957 414 0 0 0 chrX 28547964 28548010 -134051920 + (TG)n Simple_repeat Simple_repeat 2 47 0 2101 109 3 7 chrX 28548578 28548871 -134051059 - AluSx SINE Alu -20 292 1 755 179 30 36 chrX 28549047 28549215 -134050715 - Looper DNA T2_type 0 1558 1392 2222 85 3 7 chrX 28549215 28549497 -134050433 + AluSq SINE Alu 1 281 -32 211 28 56 0 chrX 28549498 28549534 -134050396 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1292 191 28 3 chrX 28549536 28549818 -134050112 - Looper DNA T2_type -588 970 682 1390 273 46 37 chrX 28549987 28550442 -134049488 + LTR16C LTR ERVL 33 491 0 2252 98 6 22 chrX 28550456 28550772 -134049158 - AluSq SINE Alu -2 311 1 991 286 110 18 chrX 28551405 28551797 -134048133 - LTR33 LTR ERVL -93 428 1 2064 94 47 0 chrX 28551908 28552184 -134047746 + AluSg SINE Alu 1 289 -21 24 32 0 0 chrX 28553240 28553271 -134046659 + AT_rich Low_complexity Low_complexity 1 31 0 317 379 61 29 chrX 28553350 28553907 -134046023 - L2 LINE L2 -20 3252 1954 658 241 36 91 chrX 28553925 28554178 -134045752 - MIR SINE MIR 0 262 24 248 276 55 79 chrX 28554187 28554314 -134045616 - L2 LINE L2 -1387 1927 1804 284 341 87 61 chrX 28554604 28554692 -134045238 + MLT1K LTR MaLR 184 268 -320 180 0 0 0 chrX 28554692 28554712 -134045218 + (TTG)n Simple_repeat Simple_repeat 2 21 0 284 341 87 61 chrX 28554712 28555016 -134044914 + MLT1K LTR MaLR 268 586 -2 892 260 78 72 chrX 28555708 28556193 -134043737 + LTR16C LTR ERVL 1 488 -3 21 57 0 0 chrX 28556247 28556282 -134043648 + AT_rich Low_complexity Low_complexity 1 35 0 219 369 0 0 chrX 28556283 28556348 -134043582 + L2 LINE L2 3245 3309 -4 5137 199 20 3 chrX 28556884 28557825 -134042105 + L1MA2 LINE L1 567 1523 -6042 2218 98 21 0 chrX 28557817 28558154 -134041776 - L1M1 LINE L1 -4749 2816 2473 * 458 99 0 12 chrX 28558154 28558235 -134041695 + L1MA2 LINE L1 2405 2484 -5081 18133 37 2 0 chrX 28558236 28561225 -134038705 + L1PA5 LINE L1 3161 6152 -2 14416 185 32 15 chrX 28561292 28564714 -134035216 + L1MA2 LINE L1 3305 6833 -890 354 98 0 0 chrX 28564714 28564765 -134035165 + (TA)n Simple_repeat Simple_repeat 2 52 0 14416 185 32 15 chrX 28564765 28565672 -134034258 + L1MA2 LINE L1 6833 7723 0 21 0 0 0 chrX 28565672 28565693 -134034237 + AT_rich Low_complexity Low_complexity 1 21 0 2304 180 11 7 chrX 28565698 28566137 -134033793 + L1MA6 LINE L1 5824 6264 -36 22 35 0 0 chrX 28566158 28566187 -134033743 + AT_rich Low_complexity Low_complexity 1 29 0 1506 231 22 66 chrX 28566192 28566691 -134033239 + L1ME3A LINE L1 5626 6102 -68 434 86 0 0 chrX 28566687 28566745 -134033185 - L1P LINE L1 -1194 4952 4895 * 185 315 22 11 chrX 28568018 28568107 -134031823 + MIR SINE MIR 119 208 -54 25 0 0 0 chrX 28569036 28569061 -134030869 + AT_rich Low_complexity Low_complexity 1 25 0 251 325 51 0 chrX 28569125 28569242 -134030688 + MIR SINE MIR 123 245 -17 223 312 21 54 chrX 28569288 28569381 -134030549 + MIR3 SINE MIR 108 197 -11 268 327 9 9 chrX 28569629 28569739 -134030191 + L1ME2 LINE L1 6045 6154 -10 311 291 107 5 chrX 28569785 28569981 -134029949 + L1MC4 LINE L1 7826 8041 -1 2286 102 0 0 chrX 28570002 28570297 -134029633 + AluSg SINE Alu 1 295 -15 597 200 18 0 chrX 28571831 28571941 -134027989 + MER5A DNA MER1_type 1 112 -77 566 324 153 48 chrX 28571988 28572717 -134027213 + L2 LINE L2 1791 2443 -871 685 250 23 11 chrX 28572717 28572893 -134027037 - MER5B DNA MER1_type 0 178 1 566 324 153 48 chrX 28572893 28572951 -134026979 + L2 LINE L2 2443 2494 -820 1764 127 0 4 chrX 28572951 28573204 -134026726 - AluSx SINE Alu -12 300 49 566 324 153 48 chrX 28573204 28573366 -134026564 + L2 LINE L2 2494 2840 -474 23 33 0 0 chrX 28574221 28574251 -134025679 + AT_rich Low_complexity Low_complexity 1 30 0 605 333 82 11 chrX 28575129 28575408 -134024522 - L2 LINE L2 -510 2804 2506 192 243 29 71 chrX 28575416 28575486 -134024444 + L2 LINE L2 3205 3271 -1 207 261 72 63 chrX 28575864 28575975 -134023955 - L2 LINE L2 -1006 2308 2197 1450 136 34 23 chrX 28577467 28577732 -134022198 + L1PA16 LINE L1 5899 6166 0 183 268 54 54 chrX 28578276 28578332 -134021598 + MER5A DNA MER1_type 59 114 -75 606 199 56 56 chrX 28578346 28578507 -134021423 + MER106A DNA MER1_type 1 161 -75 274 292 115 19 chrX 28578511 28578720 -134021210 - L1ME4a LINE L1 -67 6054 5826 210 167 0 56 chrX 28578947 28579001 -134020929 + CT-rich Low_complexity Low_complexity 2 52 0 1910 152 4 0 chrX 28579086 28579363 -134020567 + AluSx SINE Alu 1 278 -34 234 0 0 0 chrX 28579365 28579391 -134020539 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 225 0 0 0 chrX 28579652 28579677 -134020253 + (TC)n Simple_repeat Simple_repeat 1 25 0 305 24 24 0 chrX 28579677 28579719 -134020211 + (TG)n Simple_repeat Simple_repeat 2 44 0 262 314 9 19 chrX 28580105 28580210 -134019720 + MER5B DNA MER1_type 17 120 -58 23 0 0 0 chrX 28581553 28581576 -134018354 + AT_rich Low_complexity Low_complexity 1 23 0 193 315 176 28 chrX 28581887 28581995 -134017935 + MIR SINE MIR 17 140 -122 31 0 0 0 chrX 28582597 28582628 -134017302 + AT_rich Low_complexity Low_complexity 1 31 0 347 229 57 19 chrX 28583376 28583481 -134016449 - L2 LINE L2 -3 3310 3202 215 299 15 0 chrX 28583660 28583727 -134016203 + (TGAA)n Simple_repeat Simple_repeat 1 68 0 218 270 95 0 chrX 28583881 28583944 -134015986 + L2 LINE L2 3245 3313 0 24 0 0 0 chrX 28584376 28584400 -134015530 + AT_rich Low_complexity Low_complexity 1 24 0 2656 20 3 0 chrX 28585359 28585660 -134014270 + AluY SINE Alu 1 302 -9 2296 75 3 0 chrX 28586366 28586692 -134013238 + AluSp SINE Alu 1 327 0 291 157 0 0 chrX 28586923 28586974 -134012956 + (CA)n Simple_repeat Simple_repeat 2 52 0 368 321 103 12 chrX 28587059 28587224 -134012706 + MIR SINE MIR 32 211 -51 1435 185 72 70 chrX 28588523 28588896 -134011034 + MLT1A2 LTR MaLR 1 374 0 543 321 25 5 chrX 28588934 28589130 -134010800 - MIR SINE MIR -56 206 7 1274 256 53 18 chrX 28589838 28590178 -134009752 + MLT1F LTR MaLR 186 537 -5 2208 146 3 22 chrX 28591324 28591686 -134008244 + MLT2D LTR ERVL 3 357 -57 261 0 0 0 chrX 28591686 28591715 -134008215 + (TC)n Simple_repeat Simple_repeat 2 30 0 30 27 0 0 chrX 28591724 28591761 -134008169 + AT_rich Low_complexity Low_complexity 1 37 0 336 64 0 0 chrX 28591765 28591812 -134008118 + (TC)n Simple_repeat Simple_repeat 2 48 0 862 273 171 11 chrX 28592281 28592655 -134007275 + MLT1J1 LTR MaLR 13 446 0 291 311 104 18 chrX 28592873 28592956 -134006974 + MIR SINE MIR 8 82 -180 2463 14 0 11 chrX 28592956 28593238 -134006692 - AluY SINE Alu -32 279 1 291 311 104 18 chrX 28593238 28593318 -134006612 + MIR SINE MIR 82 185 -77 180 182 0 0 chrX 28593322 28593366 -134006564 + (CA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chrX 28593442 28593464 -134006466 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chrX 28595380 28595431 -134004499 + AT_rich Low_complexity Low_complexity 1 51 0 257 233 164 14 chrX 28596496 28596569 -134003361 - L2 LINE L2 0 3313 3230 180 347 19 42 chrX 28597500 28597716 -134002214 + L2 LINE L2 746 956 -2358 1658 209 25 93 chrX 28598957 28599525 -134000405 - L1MC4 LINE L1 -1 8041 7513 300 372 32 26 chrX 28599531 28599687 -134000243 - L2 LINE L2 -19 3253 3097 965 287 60 29 chrX 28599845 28600294 -133999636 + LTR16B LTR ERVL 2 464 0 795 243 6 23 chrX 28600804 28600981 -133998949 + MER45A DNA AcHobo 1 174 -4 210 356 152 8 chrX 28601472 28601604 -133998326 - L2 LINE L2 -4 3268 3118 756 313 29 0 chrX 28601694 28601934 -133997996 + MIR SINE MIR 6 252 -10 631 309 34 24 chrX 28601926 28602133 -133997797 - MIR SINE MIR -49 213 5 * 318 261 173 16 chrX 28602336 28602618 -133997312 - LTR33 LTR ERVL -149 372 3 21 0 0 0 chrX 28602622 28602643 -133997287 + AT_rich Low_complexity Low_complexity 1 21 0 4662 97 0 15 chrX 28603192 28603865 -133996065 + L1MA2 LINE L1 5354 6016 -288 2433 173 10 2 chrX 28604224 28604711 -133995219 + L1MA2 LINE L1 5814 6304 0 2004 88 0 4 chrX 28604988 28605302 -133994628 + L1PA8 LINE L1 5897 6172 0 14972 133 13 15 chrX 28605930 28608053 -133991877 - Tigger1 DNA MER2_type -1 2417 291 5463 134 17 3 chrX 28608053 28609327 -133990603 + L1PA16 LINE L1 4874 6160 -6 1559 181 0 36 chrX 28609329 28609638 -133990292 - AluJo SINE Alu -10 302 5 14972 133 13 15 chrX 28609638 28609933 -133989997 - Tigger1 DNA MER2_type -2128 290 1 184 188 0 0 chrX 28611911 28611943 -133987987 + MIR SINE MIR 119 150 -112 337 244 70 46 chrX 28614243 28614381 -133985549 - MIR SINE MIR -67 141 19 456 303 87 5 chrX 28614390 28614575 -133985355 - MIR SINE MIR -5 257 58 7722 16 0 0 chrX 28614591 28616035 -133983895 - L1PA3 LINE L1 0 6155 4738 5972 20 1 0 chrX 28616035 28616733 -133983197 + L1PA3 LINE L1 4055 4753 -1393 2403 162 42 23 chrX 28617243 28617719 -133982211 - MLT1D LTR MaLR 0 505 21 28 61 0 0 chrX 28619596 28619645 -133980285 + AT_rich Low_complexity Low_complexity 1 49 0 212 282 0 0 chrX 28619900 28619971 -133979959 + (CAGA)n Simple_repeat Simple_repeat 4 74 0 24 77 0 0 chrX 28620450 28620502 -133979428 + AT_rich Low_complexity Low_complexity 1 52 0 261 139 0 0 chrX 28621938 28621981 -133977949 + (CA)n Simple_repeat Simple_repeat 2 44 0 420 319 83 0 chrX 28622013 28622170 -133977760 + MIR SINE MIR 66 235 -27 1315 271 70 22 chrX 28622820 28622917 -133977013 + LTR16A LTR ERVL 12 103 -347 2020 156 37 0 chrX 28622917 28623269 -133976661 - MLT1A1 LTR MaLR 0 365 1 1315 271 70 22 chrX 28623269 28623573 -133976357 + LTR16A LTR ERVL 103 432 -18 22 56 0 0 chrX 28625116 28625152 -133974778 + AT_rich Low_complexity Low_complexity 1 36 0 226 289 99 0 chrX 28625469 28625611 -133974319 + MER103 DNA DNA 3 158 -8 768 225 35 63 chrX 28625761 28625821 -133974109 - L1MA10 LINE L1 -28 6306 6246 1901 135 19 61 chrX 28625821 28626184 -133973746 + MER7A DNA MER2_type 1 346 0 768 225 35 63 chrX 28626184 28626407 -133973523 - L1MA10 LINE L1 -88 6246 6031 453 33 0 0 chrX 28626417 28626477 -133973453 - AluY SINE Alu -10 301 242 1556 55 0 0 chrX 28626477 28626659 -133973271 - AluY SINE Alu -129 182 1 2331 86 13 0 chrX 28627764 28628068 -133971862 + AluSc SINE Alu 2 309 0 2302 100 0 3 chrX 28628756 28629066 -133970864 + AluSg SINE Alu 1 309 -1 23 0 0 0 chrX 28629322 28629345 -133970585 + AT_rich Low_complexity Low_complexity 1 23 0 1409 209 40 20 chrX 28629346 28629642 -133970288 - AluJo SINE Alu -8 304 3 2374 72 3 0 chrX 28631739 28632032 -133967898 - AluSp SINE Alu -19 294 1 261 0 0 0 chrX 28632348 28632377 -133967553 + (TG)n Simple_repeat Simple_repeat 2 30 0 1416 90 66 5 chrX 28633336 28633548 -133966382 + MER30 DNA MER1_type 6 230 0 233 222 0 32 chrX 28633998 28634061 -133965869 + LTR67 LTR ERVL 495 555 -2 387 336 61 38 chrX 28634067 28634418 -133965512 + L2 LINE L2 2701 3058 -214 495 260 238 0 chrX 28634503 28634684 -133965246 + MIR SINE MIR 18 241 -21 206 178 50 30 chrX 28635187 28635288 -133964642 + (TA)n Simple_repeat Simple_repeat 2 104 0 1958 150 7 0 chrX 28635335 28635628 -133964302 - AluSx SINE Alu -17 295 1 758 295 39 27 chrX 28635975 28636233 -133963697 - MIR SINE MIR -1 261 1 329 284 158 16 chrX 28636477 28636604 -133963326 + MIR SINE MIR 9 153 -109 198 247 247 0 chrX 28636730 28636807 -133963123 - MIR SINE MIR -72 136 41 180 0 0 0 chrX 28637552 28637572 -133962358 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chrX 28638387 28638416 -133961514 + AT_rich Low_complexity Low_complexity 1 29 0 340 282 40 32 chrX 28638765 28638889 -133961041 + MIR SINE MIR 12 136 -126 217 307 11 11 chrX 28638950 28639038 -133960892 + MIR SINE MIR 136 223 -39 213 191 21 21 chrX 28639079 28639126 -133960804 + MIR SINE MIR 216 262 0 299 25 25 0 chrX 28640418 28640458 -133959472 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1365 50 0 0 chrX 28640487 28640692 -133959238 + (G)n Simple_repeat Simple_repeat 1 205 0 241 313 12 0 chrX 28641948 28642028 -133957902 + CT-rich Low_complexity Low_complexity 2 82 0 323 248 6 25 chrX 28642047 28642204 -133957726 + CT-rich Low_complexity Low_complexity 3 156 0 275 157 0 0 chrX 28643167 28643218 -133956712 + MER30B DNA MER1_type 10 60 -130 241 121 15 15 chrX 28643538 28643604 -133956326 + GA-rich Low_complexity Low_complexity 3 68 0 267 275 38 12 chrX 28643869 28643949 -133955981 + L2 LINE L2 3209 3290 -23 519 255 7 55 chrX 28644315 28644460 -133955470 + MIR SINE MIR 32 169 -93 187 289 58 29 chrX 28644564 28644668 -133955262 + MIR SINE MIR 106 212 -50 4581 161 14 6 chrX 28645434 28646291 -133953639 - L1MA8 LINE L1 -102 6189 5326 30 45 0 0 chrX 28646337 28646381 -133953549 + AT_rich Low_complexity Low_complexity 1 44 0 353 266 28 0 chrX 28646502 28646611 -133953319 - L1ME LINE L1 -420 5701 5590 1795 267 67 27 chrX 28646701 28647577 -133952353 - L1ME3A LINE L1 -79 6160 5222 1088 224 5 0 chrX 28649132 28649346 -133950584 - MER58A DNA MER1_type -9 215 1 2018 115 0 0 chrX 28650220 28650481 -133949449 + AluSx SINE Alu 26 286 -26 21 57 0 0 chrX 28651270 28651305 -133948625 + AT_rich Low_complexity Low_complexity 1 35 0 429 295 133 63 chrX 28651776 28652378 -133947552 - L1MEc LINE L1 -3528 2687 2094 1900 76 0 0 chrX 28652473 28652709 -133947221 - AluY SINE Alu -75 236 1 23 0 0 0 chrX 28652815 28652838 -133947092 + GC_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrX 28652873 28652915 -133947015 + GC_rich Low_complexity Low_complexity 1 42 0 285 379 6 22 chrX 28653357 28653539 -133946391 + G-rich Low_complexity Low_complexity 2 180 0 382 313 99 21 chrX 28655115 28655348 -133944582 - L2 LINE L2 -6 3307 3057 2267 104 50 19 chrX 28655736 28656100 -133943830 - THE1C LTR MaLR 0 375 1 9402 112 63 9 chrX 28656100 28657598 -133942332 - THE1C-int LTR MaLR 0 1580 1 2176 113 50 19 chrX 28657598 28657962 -133941968 - THE1C LTR MaLR 0 375 1 1368 146 41 37 chrX 28657962 28658256 -133941674 + L1MA9 LINE L1 6013 6307 -5 400 333 40 94 chrX 28658275 28658770 -133941160 - L2 LINE L2 -98 3174 2699 249 299 55 16 chrX 28658827 28658954 -133940976 + MER94 DNA DNA 3 134 0 389 299 114 32 chrX 28658955 28659296 -133940634 - L2 LINE L2 -684 2630 2262 320 295 43 22 chrX 28659354 28659493 -133940437 - LTR16C LTR ERVL -8 483 342 339 370 25 35 chrX 28659900 28660103 -133939827 - L1ME3A LINE L1 -7 6163 5963 420 208 0 0 chrX 28660116 28660212 -133939718 + CT-rich Low_complexity Low_complexity 1 96 0 2420 77 3 0 chrX 28660212 28660510 -133939420 - AluSp SINE Alu -14 299 1 687 334 94 29 chrX 28661104 28661331 -133938599 + L2 LINE L2 2364 2575 -697 4089 141 35 3 chrX 28661331 28662007 -133937923 - L1PA16 LINE L1 -9 6157 5460 687 334 94 29 chrX 28662007 28662432 -133937498 + L2 LINE L2 2575 3055 -217 531 309 39 17 chrX 28663233 28663414 -133936516 - MIR SINE MIR -8 254 70 1025 162 158 0 chrX 28663528 28663756 -133936174 + MER21A LTR ERV1 1 264 -667 2854 141 34 54 chrX 28663761 28664088 -133935842 + MER21A LTR ERV1 376 689 -242 285 98 0 0 chrX 28664088 28664129 -133935801 + (TG)n Simple_repeat Simple_repeat 1 41 0 2854 141 34 54 chrX 28664129 28664361 -133935569 + MER21A LTR ERV1 689 924 -7 436 203 16 55 chrX 28664628 28664756 -133935174 + MER94 DNA DNA 1 123 -11 251 276 0 0 chrX 28664983 28665041 -133934889 + L2 LINE L2 3254 3311 -2 2321 113 0 0 chrX 28665187 28665488 -133934442 - AluSc SINE Alu -8 301 1 181 367 0 0 chrX 28666892 28666941 -133932989 + MIR SINE MIR 81 129 -79 2406 101 0 0 chrX 28667182 28667489 -133932441 + AluSx SINE Alu 1 307 -5 23 0 0 0 chrX 28667495 28667518 -133932412 + AT_rich Low_complexity Low_complexity 1 23 0 2340 101 0 3 chrX 28667987 28668295 -133931635 + AluSg SINE Alu 1 307 -3 331 331 25 32 chrX 28669674 28669831 -133930099 + L2 LINE L2 2854 3009 -304 706 275 73 68 chrX 28669857 28670283 -133929647 - MLT1J2 LTR MaLR -21 429 2 603 229 92 82 chrX 28670284 28670576 -133929354 + L2 LINE L2 3011 3305 -8 478 246 75 30 chrX 28670946 28671080 -133928850 - MIR SINE MIR -74 188 49 201 39 0 0 chrX 28671609 28671635 -133928295 + (CA)n Simple_repeat Simple_repeat 2 27 0 315 325 113 29 chrX 28674162 28674543 -133925387 + L1ME4a LINE L1 5483 5895 -226 598 121 0 0 chrX 28675996 28676087 -133923843 + L1MA1 LINE L1 6212 6302 0 191 430 63 6 chrX 28676421 28676579 -133923351 + L2 LINE L2 3096 3262 -10 1049 262 91 3 chrX 28676614 28677004 -133922926 + L1ME3A LINE L1 5725 6165 -5 304 251 81 11 chrX 28677283 28677377 -133922553 + MLT1H1 LTR MaLR 414 502 -53 1036 177 9 78 chrX 28677484 28677716 -133922214 + MER20 DNA MER1_type 4 219 0 1978 134 0 10 chrX 28677746 28677766 -133922164 - AluSx SINE Alu -9 303 284 372 43 0 0 chrX 28677766 28677812 -133922118 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1978 134 0 10 chrX 28677812 28678097 -133921833 - AluSx SINE Alu -28 284 1 341 280 19 0 chrX 28678659 28678766 -133921164 + (TA)n Simple_repeat Simple_repeat 2 110 0 220 336 69 9 chrX 28679305 28679421 -133920509 - MIR SINE MIR -6 256 134 187 416 0 0 chrX 28679577 28679654 -133920276 - L2 LINE L2 -8 3264 3188 619 255 46 10 chrX 28679843 28680039 -133919891 + MER3 DNA MER1_type 1 203 -6 694 280 24 60 chrX 28680153 28680403 -133919527 + MIR SINE MIR 17 257 -5 29 28 0 0 chrX 28681484 28681520 -133918410 + AT_rich Low_complexity Low_complexity 1 36 0 542 250 23 17 chrX 28681558 28681730 -133918200 - L1M4 LINE L1 -1218 4928 4756 282 173 93 0 chrX 28681737 28681812 -133918118 - L1MB7 LINE L1 0 6184 6103 378 249 79 68 chrX 28681821 28681936 -133917994 - L1MB3 LINE L1 -1 6182 6070 2303 83 3 3 chrX 28681936 28682237 -133917693 - AluSx SINE Alu -11 301 1 378 249 79 68 chrX 28682237 28682386 -133917544 - L1MB3 LINE L1 -113 6070 5915 3331 66 2 7 chrX 28682505 28682946 -133916984 + L1PA6 LINE L1 5701 6139 -15 382 287 35 0 chrX 28683099 28683214 -133916716 - LTR16C LTR ERVL -372 119 1 268 269 68 78 chrX 28683525 28683744 -133916186 + MLT1K LTR MaLR 200 416 -172 201 94 0 0 chrX 28683750 28683782 -133916148 + (A)n Simple_repeat Simple_repeat 1 32 0 226 295 16 0 chrX 28684603 28684664 -133915266 + MIR SINE MIR 201 262 0 307 287 126 42 chrX 28685546 28685614 -133914316 - MIR SINE MIR -1 261 200 9420 100 4 2 chrX 28685614 28686898 -133913032 + HSMAR1 DNA Mariner 1 1287 0 307 287 126 42 chrX 28686898 28686972 -133912958 - MIR SINE MIR -62 200 107 815 224 63 83 chrX 28686992 28687359 -133912571 + MLT1G1 LTR MaLR 1 417 -178 344 253 22 0 chrX 28687401 28687492 -133912438 + MLT1G1 LTR MaLR 463 555 0 369 16 0 49 chrX 28687950 28688011 -133911919 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 5449 97 11 5 chrX 28688468 28689270 -133910660 + L1MA2 LINE L1 5498 6304 0 308 293 171 0 chrX 28689736 28689876 -133910054 + L2 LINE L2 3150 3313 0 1589 244 133 11 chrX 28690112 28690554 -133909376 + MLT1H LTR MaLR 41 536 -13 611 260 25 5 chrX 28690855 28691009 -133908921 - LTR33A LTR ERVL -300 221 65 322 237 200 30 chrX 28691339 28691455 -133908475 + MER5A DNA MER1_type 26 169 -20 4236 193 24 3 chrX 28691455 28692303 -133907627 - MER6 DNA MER2_type 0 865 1 322 237 200 30 chrX 28692303 28692321 -133907609 + MER5A DNA MER1_type 169 183 -6 248 326 18 13 chrX 28692502 28692629 -133907301 - MIR SINE MIR -71 137 20 2175 115 3 6 chrX 28692855 28693168 -133906762 - AluSx SINE Alu 0 312 1 348 335 11 7 chrX 28695707 28695872 -133904058 + Tigger1 DNA MER2_type 967 1110 -1308 234 128 0 0 chrX 28696749 28696788 -133903142 + (CA)n Simple_repeat Simple_repeat 1 39 0 948 171 5 31 chrX 28697107 28697300 -133902630 + L1MA7 LINE L1 5886 6073 -218 248 351 52 47 chrX 28697588 28697779 -133902151 + MIR SINE MIR 1 192 -70 310 244 58 0 chrX 28697926 28698012 -133901918 - MIR SINE MIR -90 172 82 266 372 31 16 chrX 28698855 28698984 -133900946 + L2 LINE L2 3136 3266 -6 919 323 116 64 chrX 28699824 28701010 -133898920 + L2 LINE L2 1657 2904 -410 300 290 47 37 chrX 28701493 28701600 -133898330 + L2 LINE L2 3146 3253 -19 245 264 14 28 chrX 28701972 28702044 -133897886 + L2 LINE L2 3201 3271 -1 615 247 63 6 chrX 28703122 28703296 -133896634 - MER115 DNA AcHobo -1 692 509 812 76 21 14 chrX 28703296 28703440 -133896490 + (TTTC)n Simple_repeat Simple_repeat 3 147 0 2316 164 34 11 chrX 28703625 28704071 -133895859 - L1MB1 LINE L1 -1 6167 5712 284 315 159 41 chrX 28704077 28704384 -133895546 - MER115 DNA AcHobo -261 432 12 435 176 10 0 chrX 28704539 28704641 -133895289 + L1MA4 LINE L1 6196 6298 -2 368 320 128 53 chrX 28705595 28706010 -133893920 + MLT1K LTR MaLR 137 582 -6 341 321 46 0 chrX 28706068 28706177 -133893753 + MIR SINE MIR 3 116 -146 316 303 90 8 chrX 28706276 28706398 -133893532 - MIR SINE MIR -59 203 72 486 258 8 38 chrX 28706447 28706579 -133893351 + L2 LINE L2 3184 3311 -2 204 327 58 0 chrX 28706582 28706634 -133893296 - L2 LINE L2 -100 3172 3118 183 321 25 49 chrX 28707538 28707619 -133892311 + L2 LINE L2 1346 1424 -1890 193 318 27 31 chrX 28707865 28707985 -133891945 + MIR SINE MIR 36 153 -55 273 317 192 56 chrX 28708340 28709091 -133890839 + L2 LINE L2 1890 2742 -572 313 321 0 0 chrX 28709093 28709177 -133890753 + L2 LINE L2 3188 3271 -1 248 158 18 0 chrX 28709783 28709840 -133890090 + CT-rich Low_complexity Low_complexity 1 58 0 462 79 0 0 chrX 28709840 28709903 -133890027 + (TG)n Simple_repeat Simple_repeat 2 64 0 712 264 183 66 chrX 28709940 28710334 -133889596 + MLT1J2 LTR MaLR 1 440 -10 892 212 39 10 chrX 28711524 28711727 -133888203 + MER3 DNA MER1_type 1 209 0 213 154 0 0 chrX 28712220 28712259 -133887671 + (ATG)n Simple_repeat Simple_repeat 1 39 0 525 292 188 0 chrX 28712274 28712476 -133887454 - MIR SINE MIR -21 241 2 1952 141 3 7 chrX 28712539 28712844 -133887086 - AluSq SINE Alu -9 304 1 2653 128 59 15 chrX 28712945 28713420 -133886510 - L1PA16 LINE L1 0 6166 5671 21 0 0 0 chrX 28713519 28713540 -133886390 + AT_rich Low_complexity Low_complexity 1 21 0 188 305 85 25 chrX 28713783 28713901 -133886029 - MIR SINE MIR -72 190 66 2315 92 0 7 chrX 28713916 28714221 -133885709 + AluSc SINE Alu 1 303 -6 1487 181 42 0 chrX 28715185 28715494 -133884436 - MER33 DNA MER1_type -2 322 1 446 250 176 17 chrX 28715719 28716015 -133883915 - L1ME3A LINE L1 -219 5951 5609 1415 197 90 32 chrX 28716304 28716649 -133883281 - MLT1B LTR MaLR -25 365 1 268 356 144 0 chrX 28718952 28719070 -133880860 + L2 LINE L2 3138 3272 0 233 289 155 21 chrX 28720219 28720316 -133879614 - L2 LINE L2 -5 3308 3199 714 186 73 40 chrX 28721470 28721647 -133878283 + MER5A DNA MER1_type 2 184 -5 * 757 269 11 6 chrX 28721638 28721813 -133878117 + MER5A DNA MER1_type 8 183 -6 730 246 11 11 chrX 28721829 28722004 -133877926 + MER5B DNA MER1_type 4 178 0 354 268 184 18 chrX 28722353 28722521 -133877409 - MIR SINE MIR 0 262 67 270 295 57 33 chrX 28723433 28723555 -133876375 - L2 LINE L2 -2 3311 3187 2300 111 7 0 chrX 28723661 28723968 -133875962 + AluSg SINE Alu 1 309 -1 219 407 0 0 chrX 28723992 28724100 -133875830 - L2 LINE L2 -216 3056 2949 365 300 9 9 chrX 28724196 28724306 -133875624 - MER94 DNA DNA -5 129 20 200 375 80 40 chrX 28724872 28725096 -133874834 - L2 LINE L2 -642 2672 2440 787 295 36 65 chrX 28725167 28725614 -133874316 - LTR33A LTR ERVL -32 491 58 1015 221 14 5 chrX 28726569 28726786 -133873144 + MER63B DNA MER1_type 1 219 -217 428 279 88 72 chrX 28726895 28727146 -133872784 - MIR SINE MIR -5 257 3 428 366 58 0 chrX 28728552 28728724 -133871206 + MIR SINE MIR 81 262 0 1216 231 116 31 chrX 28729538 28729797 -133870133 - MLT1C LTR MaLR -7 460 224 252 0 0 0 chrX 28729797 28729825 -133870105 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3694 30 0 5 chrX 28729825 28730263 -133869667 - L1PA3 LINE L1 -18 6137 5702 1216 231 116 31 chrX 28730263 28730426 -133869504 - MLT1C LTR MaLR -242 225 1 370 295 115 38 chrX 28732830 28733013 -133866917 + MIR SINE MIR 5 201 -61 239 359 69 30 chrX 28733793 28733924 -133866006 - MIR3 SINE MIR -21 187 52 1046 202 10 10 chrX 28735756 28735959 -133863971 - L1ME1 LINE L1 0 6166 5964 777 161 0 0 chrX 28736204 28736334 -133863596 + MER3 DNA MER1_type 80 209 0 686 211 0 108 chrX 28739554 28739739 -133860191 - MER5B DNA MER1_type -3 175 11 353 210 50 0 chrX 28741587 28741687 -133858243 - L1ME4a LINE L1 -2 6119 6015 28 0 0 0 chrX 28744511 28744539 -133855391 + AT_rich Low_complexity Low_complexity 1 28 0 444 301 169 41 chrX 28744859 28745178 -133854752 + L2 LINE L2 2949 3308 -5 938 181 5 11 chrX 28747055 28747243 -133852687 + L1PA16 LINE L1 5978 6164 -2 26 30 0 0 chrX 28747286 28747319 -133852611 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 28747627 28747648 -133852282 + AT_rich Low_complexity Low_complexity 1 21 0 1772 217 20 72 chrX 28747737 28748226 -133851704 + MLT2B1 LTR ERVL 1 464 -56 239 53 0 26 chrX 28748236 28748274 -133851656 + (GA)n Simple_repeat Simple_repeat 1 37 0 226 216 20 0 chrX 28748382 28748433 -133851497 + L1MA6 LINE L1 6025 6076 -224 2490 71 0 7 chrX 28748543 28748853 -133851077 - AluY SINE Alu -3 308 1 3198 117 20 0 chrX 28748974 28749462 -133850468 - L1MA6 LINE L1 -422 5878 5381 1733 202 14 3 chrX 28749459 28749806 -133850124 + L1MA6 LINE L1 5868 6218 -82 * 225 138 75 0 chrX 28749969 28750049 -133849881 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 2395 91 3 0 chrX 28750334 28750642 -133849288 + AluSc SINE Alu 1 309 0 38 68 0 0 chrX 28750739 28750812 -133849118 + AT_rich Low_complexity Low_complexity 1 73 0 291 251 146 5 chrX 28750866 28750970 -133848960 - L1ME1 LINE L1 -351 5770 5656 248 342 8 58 chrX 28750971 28751091 -133848839 + L2 LINE L2 2849 2962 -310 29 28 0 0 chrX 28754274 28754310 -133845620 + AT_rich Low_complexity Low_complexity 1 36 0 204 264 108 61 chrX 28754524 28754672 -133845258 - L3b LINE CR1 -147 1436 1282 192 303 10 71 chrX 28756237 28756336 -133843594 - L3 LINE CR1 -759 818 726 2978 193 64 19 chrX 28756454 28757129 -133842801 - L1ME2 LINE L1 -99 6065 5361 1475 213 7 7 chrX 28757686 28757968 -133841962 + AluJo SINE Alu 1 282 -30 388 254 118 0 chrX 28758146 28758256 -133841674 - L2 LINE L2 -1 3271 3149 191 254 91 0 chrX 28759824 28759879 -133840051 - L2 LINE L2 -4 3309 3250 286 301 24 24 chrX 28760693 28760776 -133839154 + L2 LINE L2 2222 2304 -1010 378 330 41 18 chrX 28760776 28760994 -133838936 + L2 LINE L2 2473 2695 -619 204 294 0 0 chrX 28760996 28761047 -133838883 + L2 LINE L2 3249 3299 -14 2600 147 9 13 chrX 28762613 28763061 -133836869 - L1PA16 LINE L1 -11 6155 5710 306 318 0 12 chrX 28764951 28765036 -133834894 - MER5B DNA MER1_type -74 104 21 415 293 159 6 chrX 28765870 28766027 -133833903 + MER5A DNA MER1_type 9 189 0 345 225 0 0 chrX 28766738 28766827 -133833103 + CT-rich Low_complexity Low_complexity 1 89 0 312 346 56 0 chrX 28766850 28766957 -133832973 - L2 LINE L2 0 3272 3160 243 170 0 38 chrX 28766958 28767011 -133832919 + HSMAR1 DNA Mariner 1237 1287 0 208 198 0 60 chrX 28769728 28769844 -133830086 + G-rich Low_complexity Low_complexity 3 111 0 231 161 0 0 chrX 28769936 28769992 -133829938 + G-rich Low_complexity Low_complexity 1 56 0 2239 77 14 7 chrX 28770055 28770352 -133829578 - AluSp SINE Alu -14 299 1 848 330 108 60 chrX 28770438 28771437 -133828493 + L2 LINE L2 2221 3264 -8 1165 224 5 0 chrX 28772254 28772468 -133827462 + MER58A DNA MER1_type 1 215 -9 249 33 0 0 chrX 28773897 28773927 -133826003 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 561 296 57 40 chrX 28774197 28774444 -133825486 + MIR SINE MIR 4 254 -8 351 287 0 10 chrX 28775456 28775557 -133824373 + L1MC4 LINE L1 6604 6703 -1339 376 225 8 16 chrX 28775562 28775691 -133824239 + (TA)n Simple_repeat Simple_repeat 1 128 0 222 308 105 30 chrX 28776256 28776389 -133823541 + MIR3 SINE MIR 23 165 -43 193 350 38 19 chrX 28776589 28776749 -133823181 + L3b LINE CR1 1102 1264 -319 23 0 0 0 chrX 28777843 28777866 -133822064 + AT_rich Low_complexity Low_complexity 1 23 0 3050 33 0 0 chrX 28778568 28778929 -133821001 + L1PA4 LINE L1 5790 6150 -5 182 36 0 36 chrX 28778938 28778966 -133820964 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 640 293 6 6 chrX 28779062 28779229 -133820701 + MIR SINE MIR 6 172 -90 538 222 0 0 chrX 28779255 28779354 -133820576 - LTR16C LTR ERVL 0 491 393 835 273 85 28 chrX 28779517 28779653 -133820277 - LTR16C LTR ERVL -120 371 244 2580 100 3 19 chrX 28779653 28780022 -133819908 + THE1B LTR MaLR 1 363 -1 835 273 85 28 chrX 28780022 28780204 -133819726 - LTR16C LTR ERVL -247 244 35 523 203 24 41 chrX 28780213 28780336 -133819594 + MER58A DNA MER1_type 20 140 0 292 229 16 0 chrX 28780341 28780402 -133819528 + MER58A DNA MER1_type 162 223 -1 2560 32 0 10 chrX 28780553 28780867 -133819063 + AluY SINE Alu 1 311 0 631 233 63 85 chrX 28781458 28781522 -133818408 + MER5A DNA MER1_type 2 66 -123 2335 86 0 0 chrX 28781522 28781813 -133818117 + AluSx SINE Alu 1 291 -21 631 233 63 85 chrX 28781813 28781937 -133817993 + MER5A DNA MER1_type 66 186 -3 1165 274 48 46 chrX 28782034 28782537 -133817393 + MLT1H LTR MaLR 44 547 -2 269 344 0 21 chrX 28782716 28782812 -133817118 + MIR3 SINE MIR 112 205 -3 2135 130 10 0 chrX 28782870 28783148 -133816782 + AluSx SINE Alu 1 284 -28 252 0 0 0 chrX 28783148 28783176 -133816754 + (CA)n Simple_repeat Simple_repeat 1 28 0 2135 130 10 0 chrX 28783176 28783205 -133816725 + AluSx SINE Alu 284 311 -1 322 280 42 25 chrX 28783346 28783464 -133816466 + MIR SINE MIR 21 140 -122 480 286 143 15 chrX 28784127 28784386 -133815544 + L2 LINE L2 2837 3128 -185 417 239 197 8 chrX 28784389 28784506 -133815424 - MER5A DNA MER1_type -2 187 49 416 312 116 6 chrX 28784529 28784702 -133815228 + L2 LINE L2 3122 3313 0 183 42 0 0 chrX 28785386 28785410 -133814520 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 372 290 100 56 chrX 28785784 28786125 -133813805 + LTR16A LTR ERVL 31 386 -64 329 299 10 31 chrX 28786762 28786859 -133813071 + MER5B DNA MER1_type 17 111 -67 1120 250 39 0 chrX 28786865 28787125 -133812805 + LTR16A LTR ERVL 7 276 -174 573 194 8 47 chrX 28787148 28787277 -133812653 + MER63 DNA MER1_type 1 750 -86 267 297 47 18 chrX 28787359 28787488 -133812442 + MLT1I LTR MaLR 99 206 -203 668 240 58 0 chrX 28787555 28787709 -133812221 - MER5A DNA MER1_type -1 188 26 295 308 105 0 chrX 28787719 28787862 -133812068 + MER105 DNA DNA 47 204 0 381 216 103 27 chrX 28787875 28788038 -133811892 + MLT1J2 LTR MaLR 269 437 -9 419 320 101 71 chrX 28788357 28788694 -133811236 - L2 LINE L2 -1 3271 2925 432 0 0 0 chrX 28789006 28789054 -133810876 + (TG)n Simple_repeat Simple_repeat 2 49 0 3432 54 75 6 chrX 28789134 28789614 -133810316 + LTR10D LTR ERV1 1 513 0 313 297 55 48 chrX 28789623 28789768 -133810162 + L2 LINE L2 3126 3271 -1 1480 178 42 18 chrX 28789940 28790226 -133809704 - AluJb SINE Alu -19 293 1 1974 104 45 0 chrX 28790615 28790904 -133809026 - AluSq SINE Alu -11 302 1 36 23 0 0 chrX 28790976 28791019 -133808911 + AT_rich Low_complexity Low_complexity 1 43 0 630 182 131 6 chrX 28791054 28791230 -133808700 - MER63 DNA MER1_type -43 1017 820 353 305 114 38 chrX 28792123 28792333 -133807597 + MIR SINE MIR 32 257 -5 496 162 0 12 chrX 28793462 28793561 -133806369 + L1MA4 LINE L1 6161 6255 -45 5993 207 22 17 chrX 28793562 28794737 -133805193 + L1 LINE L1 2275 3460 -2686 2127 131 3 0 chrX 28794737 28795042 -133804888 + AluSg SINE Alu 1 306 -4 5993 207 22 17 chrX 28795042 28795286 -133804644 + L1 LINE L1 3460 3701 -2445 2722 125 22 16 chrX 28795293 28795740 -133804190 + L1PB2 LINE L1 5701 6150 -1 37 0 0 0 chrX 28795790 28795827 -133804103 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrX 28795879 28795908 -133804022 + AT_rich Low_complexity Low_complexity 1 29 0 2327 78 3 0 chrX 28796665 28796960 -133802970 + AluSp SINE Alu 1 296 -17 332 220 77 71 chrX 28797057 28797225 -133802705 + MER90 LTR ERV1 1 169 -406 854 289 60 16 chrX 28797231 28797549 -133802381 + MER90 LTR ERV1 276 607 -7 2347 80 0 13 chrX 28797952 28798252 -133801678 - AluY SINE Alu -13 298 3 522 0 0 0 chrX 28799393 28799451 -133800479 + (CA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chrX 28799829 28799852 -133800078 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chrX 28800452 28800487 -133799443 + AT_rich Low_complexity Low_complexity 1 35 0 1058 235 72 7 chrX 28801113 28801390 -133798540 + Charlie4a DNA MER1_type 6 300 -208 329 156 62 0 chrX 28801397 28801461 -133798469 + Charlie4a DNA MER1_type 426 493 -15 749 241 94 130 chrX 28801946 28802121 -133797809 - L1MC4 LINE L1 -6 8036 7856 279 0 0 0 chrX 28802121 28802152 -133797778 + (CA)n Simple_repeat Simple_repeat 1 31 0 749 241 94 130 chrX 28802152 28803185 -133796745 - L1MC4 LINE L1 -186 7856 6766 498 231 105 74 chrX 28803976 28804205 -133795725 + Charlie8 DNA MER1_type 1 236 -2181 347 129 251 61 chrX 28804208 28804360 -133795570 + MER5A DNA MER1_type 4 189 0 764 271 65 5 chrX 28804515 28804729 -133795201 - MIR SINE MIR -21 241 15 258 125 0 0 chrX 28804960 28805008 -133794922 + (A)n Simple_repeat Simple_repeat 1 48 0 303 378 21 77 chrX 28805008 28805347 -133794583 + L2 LINE L2 2945 3264 -8 263 363 60 44 chrX 28806132 28806314 -133793616 - L2 LINE L2 -209 3063 2879 1906 115 59 7 chrX 28806690 28806978 -133792952 + AluSx SINE Alu 1 303 -9 306 329 25 86 chrX 28807646 28808005 -133791925 - L2 LINE L2 -766 2548 2212 207 0 0 0 chrX 28808740 28808763 -133791167 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chrX 28809180 28809209 -133790721 + AT_rich Low_complexity Low_complexity 1 29 0 526 189 0 11 chrX 28809718 28809813 -133790117 - AluJ/FLAM SINE Alu -218 94 1 324 320 95 40 chrX 28810154 28810479 -133789451 + L2 LINE L2 1852 2194 -1120 1024 302 40 22 chrX 28810501 28810902 -133789028 - MLT1J LTR MaLR 0 511 104 258 304 9 27 chrX 28811004 28811116 -133788814 + L2 LINE L2 2275 2384 -930 205 353 59 29 chrX 28811333 28811469 -133788461 - MIR SINE MIR -103 159 20 1700 166 3 36 chrX 28811675 28811977 -133787953 - AluJb SINE Alu -20 292 1 1461 174 17 34 chrX 28811995 28812364 -133787566 - L1MA4 LINE L1 -4 6167 5757 22 70 0 0 chrX 28812614 28812657 -133787273 + AT_rich Low_complexity Low_complexity 1 43 0 391 289 70 6 chrX 28813047 28813203 -133786727 + MIR SINE MIR 90 255 -7 291 333 89 13 chrX 28813300 28813601 -133786329 + L1M4 LINE L1 104 534 -6012 3790 259 85 43 chrX 28813745 28815458 -133784472 + L1M4 LINE L1 745 2384 -4260 1825 171 44 0 chrX 28815458 28815673 -133784257 + MER46B DNA MER2_type 2 114 -2617 588 65 0 0 chrX 28815673 28815750 -133784180 + (TA)n Simple_repeat Simple_repeat 1 77 0 1825 171 44 0 chrX 28815750 28815878 -133784052 + MER46B DNA MER2_type 114 235 -1 3790 259 85 43 chrX 28815878 28817222 -133782708 + L1M4 LINE L1 2384 4027 -2617 2059 210 33 65 chrX 28817219 28817894 -133782036 + L1M4 LINE L1 4648 5300 -1344 * 355 242 0 21 chrX 28817964 28818059 -133781871 + L1M4 LINE L1 5299 5391 -1253 4749 163 31 62 chrX 28818111 28819135 -133780795 + L1MA10 LINE L1 5282 6274 -60 503 195 0 0 chrX 28819135 28819217 -133780713 - Tigger5 DNA MER2_type 0 2323 2242 368 227 0 0 chrX 28819207 28819282 -133780648 + Tigger5 DNA MER2_type 2242 2316 -7 * 425 172 11 35 chrX 28819279 28819366 -133780564 - Tigger5 DNA MER2_type -2238 85 1 1338 196 65 4 chrX 28819438 28819713 -133780217 + AluJo SINE Alu 3 294 -18 348 319 105 57 chrX 28820462 28820691 -133779239 + L2 LINE L2 2820 3059 -254 413 316 30 15 chrX 28821224 28821357 -133778573 + L2 LINE L2 3134 3268 -4 1109 76 7 0 chrX 28821384 28821529 -133778401 + AluSg/x SINE Alu 161 306 -6 244 286 71 0 chrX 28821573 28821643 -133778287 + L2 LINE L2 3229 3303 -10 1964 73 9 98 chrX 28822052 28822379 -133777551 + AluSx SINE Alu 1 298 -14 1614 169 86 30 chrX 28822384 28822757 -133777173 - Charlie1b DNA MER1_type -129 394 1 480 18 0 0 chrX 28822931 28822988 -133776942 + (TC)n Simple_repeat Simple_repeat 2 58 0 902 212 18 0 chrX 28823641 28823811 -133776119 - MER58B DNA MER1_type 0 341 169 527 121 0 11 chrX 28824652 28824743 -133775187 + (GA)n Simple_repeat Simple_repeat 2 91 0 2224 91 0 0 chrX 28825794 28826081 -133773849 - AluSq SINE Alu -26 287 1 384 340 73 5 chrX 28828733 28828939 -133770991 + L3b LINE CR1 1203 1422 -161 214 344 54 11 chrX 28830134 28830227 -133769703 - MIR SINE MIR -146 116 20 302 324 121 11 chrX 28830536 28830718 -133769212 + L2 LINE L2 3112 3313 0 238 250 21 14 chrX 28831695 28831839 -133768091 + (TA)n Simple_repeat Simple_repeat 2 146 0 13859 133 19 10 chrX 28831839 28834051 -133765879 + Tigger1 DNA MER2_type 1 2231 -187 5506 167 24 24 chrX 28834059 28835206 -133764724 - L1PA16 LINE L1 -9 6157 5017 1999 91 3 25 chrX 28835206 28835491 -133764439 - AluSc SINE Alu -30 279 1 5506 167 24 24 chrX 28835491 28836158 -133763772 - L1PA16 LINE L1 -1149 5017 4351 1026 168 97 0 chrX 28836164 28836349 -133763581 + Tigger1 DNA MER2_type 2216 2418 0 429 167 0 0 chrX 28836349 28836427 -133763503 + (TA)n Simple_repeat Simple_repeat 1 78 0 345 290 164 39 chrX 28836427 28836634 -133763296 - L2 LINE L2 -182 3131 2899 529 51 13 13 chrX 28836708 28836786 -133763144 + (TC)n Simple_repeat Simple_repeat 1 78 0 333 0 0 0 chrX 28837767 28837804 -133762126 + (CA)n Simple_repeat Simple_repeat 2 38 0 397 308 205 11 chrX 28839142 28839327 -133760603 - MIR SINE MIR -2 260 40 189 0 0 0 chrX 28840553 28840574 -133759356 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 244 270 63 0 chrX 28840576 28840639 -133759291 - L2 LINE L2 -6 3266 3200 22 35 0 0 chrX 28841034 28841063 -133758867 + AT_rich Low_complexity Low_complexity 1 29 0 1628 86 35 0 chrX 28841229 28841461 -133758469 - L1PA13 LINE L1 -3 6160 5921 366 263 44 31 chrX 28841531 28841691 -133758239 - MER104 DNA Tc2 -14 166 5 302 225 45 54 chrX 28841772 28841883 -133758047 + MLT1I LTR MaLR 99 208 -341 414 207 20 44 chrX 28842040 28842154 -133757776 + MLT1I LTR MaLR 278 567 0 1317 257 50 35 chrX 28842919 28843595 -133756335 - L2 LINE L2 -6 3307 2626 324 184 0 122 chrX 28843856 28843954 -133755976 + MER58B DNA MER1_type 251 336 -5 535 81 11 0 chrX 28844014 28844101 -133755829 + L1MA7 LINE L1 6204 6291 0 21 57 0 0 chrX 28844192 28844227 -133755703 + AT_rich Low_complexity Low_complexity 1 35 0 2022 116 7 0 chrX 28844230 28844514 -133755416 - AluSx SINE Alu -26 286 1 859 256 82 0 chrX 28844536 28844743 -133755187 - MER58A DNA MER1_type 0 224 1 265 291 107 15 chrX 28844775 28844921 -133755009 + MIR SINE MIR 29 196 -66 586 250 17 23 chrX 28845517 28845689 -133754241 + MER104 DNA Tc2 10 180 0 476 287 59 51 chrX 28845746 28846000 -133753930 - MIR SINE MIR -2 260 5 975 198 38 9 chrX 28846111 28846323 -133753607 - MER20 DNA MER1_type 0 219 2 396 284 117 15 chrX 28847390 28847743 -133752187 + L1ME LINE L1 5254 5751 -411 2280 112 0 0 chrX 28848427 28848739 -133751191 + AluSx SINE Alu 1 312 0 25 31 0 0 chrX 28849754 28849786 -133750144 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrX 28849916 28849937 -133749993 + AT_rich Low_complexity Low_complexity 1 21 0 213 229 0 21 chrX 28850832 28850880 -133749050 + MER5A DNA MER1_type 1 47 -142 1121 259 88 37 chrX 28852422 28852958 -133746972 + L1MC4a LINE L1 5287 5849 -1959 261 0 0 0 chrX 28852969 28852998 -133746932 + (TG)n Simple_repeat Simple_repeat 2 30 0 315 0 0 0 chrX 28853067 28853102 -133746828 + (CA)n Simple_repeat Simple_repeat 2 36 0 270 0 0 0 chrX 28853278 28853308 -133746622 + (CA)n Simple_repeat Simple_repeat 2 31 0 29 21 0 21 chrX 28853450 28853484 -133746446 + AT_rich Low_complexity Low_complexity 1 35 -11 2089 97 4 0 chrX 28853484 28853762 -133746168 - AluSg SINE Alu -31 279 1 29 21 0 21 chrX 28853762 28853774 -133746156 + AT_rich Low_complexity Low_complexity 35 46 0 280 242 76 102 chrX 28853919 28854071 -133745859 + MER112 DNA MER1_type 81 228 -32 2238 130 0 0 chrX 28854071 28854393 -133745537 + MER48 LTR ERV1 1 322 -65 2217 67 7 3 chrX 28854393 28854693 -133745237 + AluY SINE Alu 1 301 -10 390 243 147 34 chrX 28854739 28854916 -133745014 + Charlie2 DNA MER1_type 171 367 -2415 * 1351 197 104 55 chrX 28854911 28855480 -133744450 + Charlie2 DNA MER1_type 2231 2827 -35 1941 157 7 3 chrX 28855816 28856121 -133743809 - AluSx SINE Alu -6 306 1 272 329 12 0 chrX 28856278 28856381 -133743549 - MIR SINE MIR -67 141 37 24 0 0 0 chrX 28856781 28856805 -133743125 + AT_rich Low_complexity Low_complexity 1 24 0 352 226 129 0 chrX 28856939 28857032 -133742898 + MER67D-int LTR ERV1 63 167 -4769 2618 219 23 31 chrX 28857289 28857892 -133742038 + MER67D-int LTR ERV1 369 966 -3970 804 202 78 12 chrX 28857889 28858227 -133741703 + MER67D-int LTR ERV1 1966 2357 -2579 * 4947 223 51 68 chrX 28858540 28860176 -133739754 + MER67D-int LTR ERV1 2480 4088 -848 1189 165 36 94 chrX 28860179 28860488 -133739442 - L1MA10 LINE L1 -1 6333 6043 524 212 176 6 chrX 28860489 28860659 -133739271 + MER67D-int LTR ERV1 4083 4281 -655 292 147 80 27 chrX 28860660 28860735 -133739195 + LTR37A LTR ERV1 51 129 -297 426 225 0 0 chrX 28860823 28860912 -133739018 + MER67D-int LTR ERV1 4381 4469 -467 453 219 6 54 chrX 28860993 28861178 -133738752 + MER67D-int LTR ERV1 4482 5943 -371 * 632 216 140 59 chrX 28861147 28861383 -133738547 + MER67D-int LTR ERV1 4582 4836 -100 1879 196 80 54 chrX 28861465 28861966 -133737964 + MER67D LTR ERV1 1 514 0 21 0 0 0 chrX 28865925 28865946 -133733984 + AT_rich Low_complexity Low_complexity 1 21 0 2444 123 76 28 chrX 28865969 28866432 -133733498 + MER31A LTR ERV1 1 485 0 330 336 0 8 chrX 28867438 28867560 -133732370 - MIR SINE MIR -14 248 128 553 321 86 21 chrX 28867603 28867846 -133732084 + MIR SINE MIR 2 260 -2 827 124 0 8 chrX 28867896 28868017 -133731913 + FLAM_C SINE Alu 1 120 -23 262 22 89 0 chrX 28868017 28868062 -133731868 + A-rich Low_complexity Low_complexity 2 50 0 243 262 60 12 chrX 28868623 28868707 -133731223 - LTR65 LTR ERV1 -274 395 308 252 0 0 0 chrX 28868995 28869023 -133730907 + (TG)n Simple_repeat Simple_repeat 1 28 0 1086 282 77 17 chrX 28869825 28870333 -133729597 + L1MC/D LINE L1 5118 5655 -747 2143 154 25 3 chrX 28870441 28870797 -133729133 - THE1B LTR MaLR 0 364 1 425 249 134 17 chrX 28871638 28871904 -133728026 + L1ME LINE L1 5176 5469 -695 2728 199 96 92 chrX 28871974 28873199 -133726731 + Tigger3b DNA MER2_type 1 1230 -1 887 279 61 12 chrX 28873243 28873573 -133726357 + L1ME3A LINE L1 4446 4791 -1355 2248 280 72 26 chrX 28873620 28874820 -133725110 + L1ME3A LINE L1 4887 6165 -5 378 281 63 38 chrX 28874812 28875050 -133724880 + L1ME LINE L1 5570 5813 -308 * 5446 147 12 21 chrX 28875155 28876119 -133723811 + L1MA8 LINE L1 5326 6281 -10 297 341 66 28 chrX 28876386 28876597 -133723333 - MIR SINE MIR -24 238 20 2651 45 0 3 chrX 28876657 28876967 -133722963 + AluY SINE Alu 1 309 -2 475 276 178 20 chrX 28878298 28878450 -133721480 - MIR SINE MIR -81 181 6 327 25 0 0 chrX 28880936 28880976 -133718954 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 348 24 0 0 chrX 28880975 28881016 -133718914 + (CA)n Simple_repeat Simple_repeat 1 41 0 684 184 0 29 chrX 28881555 28881734 -133718196 + FLAM_C SINE Alu 2 176 0 421 175 135 0 chrX 28881747 28881860 -133718070 - MER3 DNA MER1_type -79 130 48 216 0 0 0 chrX 28882113 28882137 -133717793 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 28882217 28882239 -133717691 + AT_rich Low_complexity Low_complexity 1 22 0 1177 216 64 24 chrX 28882776 28883104 -133716826 + MER58B DNA MER1_type 1 341 0 23 33 0 0 chrX 28883607 28883637 -133716293 + AT_rich Low_complexity Low_complexity 1 30 0 1173 189 33 46 chrX 28883673 28883831 -133716099 + MER33 DNA MER1_type 1 155 -2430 1878 195 0 14 chrX 28883831 28884180 -133715750 - MER7A DNA MER2_type -4 342 1 1173 189 33 46 chrX 28884180 28884328 -133715602 + MER33 DNA MER1_type 155 303 -21 333 257 157 21 chrX 28885104 28885244 -133714686 + MIR3 SINE MIR 30 188 -20 193 242 0 0 chrX 28885308 28885341 -133714589 + L2 LINE L2 3158 3190 -82 22 0 0 0 chrX 28886235 28886257 -133713673 + AT_rich Low_complexity Low_complexity 1 22 0 200 211 0 0 chrX 28886318 28886356 -133713574 - L2 LINE L2 -21 3251 3214 278 235 133 0 chrX 28886686 28886784 -133713146 - MER53 DNA DNA 0 189 79 1619 204 83 47 chrX 28887439 28887972 -133711958 + MER69 DNA AcHobo 1975 2526 0 7763 20 0 0 chrX 28888249 28889353 -133710577 - L1PA3 LINE L1 0 6155 5052 5536 30 0 1 chrX 28889354 28890021 -133709909 + L1PA3 LINE L1 4399 5064 -1082 25 0 0 0 chrX 28890394 28890419 -133709511 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chrX 28890948 28890974 -133708956 + AT_rich Low_complexity Low_complexity 1 26 0 2129 127 48 22 chrX 28891569 28891924 -133708006 + THE1B LTR MaLR 1 364 0 1039 69 21 0 chrX 28891924 28892069 -133707861 + THE1B-int LTR MaLR 1 148 -1432 1196 118 20 0 chrX 28893141 28893345 -133706585 - L1MA8 LINE L1 0 6291 6084 260 344 110 13 chrX 28893672 28893826 -133706104 + MIR SINE MIR 66 234 -28 1294 167 75 3 chrX 28894376 28894669 -133705261 - MER33 DNA MER1_type -8 316 3 1488 270 66 40 chrX 28895657 28896234 -133703696 + MLT1E LTR MaLR 2 593 0 2526 105 16 5 chrX 28897303 28897674 -133702256 + THE1C LTR MaLR 1 375 0 763 273 53 5 chrX 28898437 28898646 -133701284 - LTR16C LTR ERVL 0 491 273 4892 49 10 5 chrX 28898647 28899383 -133700547 + L1P2 LINE L1 4747 5482 -672 1040 153 47 48 chrX 28899385 28899611 -133700319 - L1MA9 LINE L1 -10 6158 5933 2168 113 50 19 chrX 28899611 28899975 -133699955 + THE1C LTR MaLR 1 375 0 9294 112 65 9 chrX 28899975 28901471 -133698459 + THE1C-int LTR MaLR 1 1580 0 2257 104 50 19 chrX 28901471 28901835 -133698095 + THE1C LTR MaLR 1 375 0 1040 153 47 48 chrX 28901835 28901847 -133698083 - L1MA9 LINE L1 -153 6015 6004 376 313 99 21 chrX 28902223 28902456 -133697474 + L2 LINE L2 3057 3307 -6 240 163 0 0 chrX 28903921 28903964 -133695966 - L1MB2 LINE L1 -2 6169 6127 2418 154 19 12 chrX 28903964 28904393 -133695537 - MSTB1 LTR MaLR 0 432 1 521 386 84 30 chrX 28904475 28905164 -133694766 + L2 LINE L2 2243 2968 -346 408 252 69 31 chrX 28905384 28905620 -133694310 - MLT1L LTR MaLR -5 609 335 2117 122 3 3 chrX 28907270 28907589 -133692341 + MER47A DNA MER2_type 13 331 -35 416 188 0 0 chrX 28907590 28907659 -133692271 + MER47A DNA MER2_type 298 366 0 1481 208 142 75 chrX 28907691 28908464 -133691466 + LTR1B LTR ERV1 1 825 -1 22 0 0 0 chrX 28909200 28909222 -133690708 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 28909759 28909788 -133690142 + AT_rich Low_complexity Low_complexity 1 29 0 297 309 91 55 chrX 28910281 28910446 -133689484 + MIR3 SINE MIR 21 191 -17 2765 221 25 23 chrX 28911654 28912626 -133687304 + L1M4c LINE L1 2042 3025 -3357 1943 148 7 0 chrX 28913673 28913971 -133685959 - AluSx SINE Alu -12 300 1 723 333 44 0 chrX 28914074 28914326 -133685604 - LTR16A LTR ERVL 0 450 188 6734 60 8 1 chrX 28914735 28915601 -133684329 + L1PA7 LINE L1 5279 6150 -4 2354 182 18 16 chrX 28915615 28916125 -133683805 - L1MB2 LINE L1 -16 6155 5645 1894 196 58 10 chrX 28916125 28916518 -133683412 - MER47B DNA MER2_type 0 418 7 402 86 17 0 chrX 28916524 28916582 -133683348 - L1M3 LINE L1 -688 5646 5588 1803 148 12 21 chrX 28916582 28916913 -133683017 - L1MB2 LINE L1 -545 5626 5299 191 122 0 24 chrX 28917351 28917392 -133682538 + (TA)n Simple_repeat Simple_repeat 2 41 0 256 254 119 63 chrX 28918973 28919099 -133680831 + MIR SINE MIR 122 254 -8 216 175 0 0 chrX 28920450 28920490 -133679440 + CT-rich Low_complexity Low_complexity 2 41 0 297 0 0 0 chrX 28920490 28920523 -133679407 + (CA)n Simple_repeat Simple_repeat 2 34 0 2317 89 3 3 chrX 28921340 28921643 -133678287 + AluSc SINE Alu 1 303 -6 1285 200 56 4 chrX 28922662 28922932 -133676998 + AluJb SINE Alu 5 288 -24 329 329 0 28 chrX 28923187 28923397 -133676533 + G-rich Low_complexity Low_complexity 1 204 0 201 175 0 0 chrX 28923440 28923480 -133676450 + (TA)n Simple_repeat Simple_repeat 2 41 0 310 299 23 0 chrX 28923486 28923573 -133676357 + L1MC4 LINE L1 6614 6702 -1340 * 314 258 0 43 chrX 28923502 28923595 -133676335 - L1MC4 LINE L1 -1339 6703 6615 255 125 0 0 chrX 28923595 28923635 -133676295 + (CA)n Simple_repeat Simple_repeat 1 40 0 1699 129 47 85 chrX 28923644 28924008 -133675922 - THE1C LTR MaLR -25 350 1 1355 145 0 12 chrX 28924323 28924564 -133675366 + L1MA2 LINE L1 6054 6291 -13 493 304 83 13 chrX 28924986 28925216 -133674714 - MIR SINE MIR -6 256 11 2411 68 0 3 chrX 28925819 28926135 -133673795 - AluY SINE Alu 0 315 1 186 189 0 0 chrX 28926137 28926174 -133673756 + (TTA)n Simple_repeat Simple_repeat 2 38 0 815 165 61 25 chrX 28926336 28926634 -133673296 + MSTA LTR MaLR 1 369 -57 * 1514 191 88 41 chrX 28926628 28926990 -133672940 + MSTA LTR MaLR 33 411 -17 577 330 19 15 chrX 28929506 28929712 -133670218 - MIR SINE MIR -4 258 52 802 302 141 12 chrX 28929796 28930200 -133669730 + L2 LINE L2 2852 3307 -6 781 138 0 58 chrX 28932388 28932526 -133667404 - FLAM_C SINE Alu -2 131 2 290 359 122 30 chrX 28934577 28934839 -133665091 - L3 LINE CR1 -12 1565 1280 432 0 0 0 chrX 28935502 28935550 -133664380 + (GA)n Simple_repeat Simple_repeat 1 48 0 2687 28 0 0 chrX 28935607 28935927 -133664003 - L1PA4 LINE L1 -1 6154 5835 524 115 0 0 chrX 28936238 28936316 -133663614 + (GGGGA)n Simple_repeat Simple_repeat 4 81 0 420 323 31 21 chrX 28936491 28936683 -133663247 + MIR3 SINE MIR 15 208 0 1614 112 16 0 chrX 28936827 28937078 -133662852 + L1MA5A LINE L1 6040 6294 -3 202 340 0 0 chrX 28937343 28937396 -133662534 + MIR3 SINE MIR 111 163 -45 9591 191 32 18 chrX 28937624 28940652 -133659278 + L1MB1 LINE L1 3069 6142 -26 441 273 91 3 chrX 28942257 28942435 -133657495 + MIR SINE MIR 1 248 -14 24 100 0 0 chrX 28943808 28943888 -133656042 + AT_rich Low_complexity Low_complexity 1 80 0 243 0 0 0 chrX 28944600 28944627 -133655303 + (CA)n Simple_repeat Simple_repeat 2 28 0 236 133 0 0 chrX 28945107 28945152 -133654778 - L1MA3 LINE L1 -3 6302 6258 205 266 31 0 chrX 28946056 28946120 -133653810 + (TG)n Simple_repeat Simple_repeat 1 66 0 5593 161 11 6 chrX 28948763 28949933 -133649997 - L1PA16 LINE L1 -1 6165 4993 394 215 0 19 chrX 28949926 28950033 -133649897 - L1 LINE L1 -1251 4895 4791 * 719 170 0 0 chrX 28950584 28950719 -133649211 + L1MA4 LINE L1 6166 6300 0 374 91 0 18 chrX 28951873 28951949 -133647981 - L1PB1 LINE L1 -420 5731 5680 * 2138 126 13 78 chrX 28951946 28952342 -133647588 + L1PB1 LINE L1 5735 6104 -47 * 3856 32 9 0 chrX 28952338 28952799 -133647131 - L1PA4 LINE L1 -262 5892 5428 2414 18 0 0 chrX 28952799 28953080 -133646850 + L1PA4 LINE L1 5870 6152 -3 308 133 12 48 chrX 28953080 28953159 -133646771 + L1PB1 LINE L1 6069 6148 -3 27 62 0 0 chrX 28953718 28953766 -133646164 + AT_rich Low_complexity Low_complexity 1 48 0 1215 226 76 6 chrX 28955837 28956151 -133643779 + MER58B DNA MER1_type 6 341 0 357 125 0 0 chrX 28956260 28956316 -133643614 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1771 161 3 16 chrX 28957184 28957494 -133642436 + AluSx SINE Alu 7 312 0 189 0 0 0 chrX 28957498 28957519 -133642411 + (GA)n Simple_repeat Simple_repeat 2 22 0 195 385 55 69 chrX 28957521 28957739 -133642191 - L2 LINE L2 -21 3251 3037 2407 77 0 3 chrX 28957779 28958091 -133641839 - AluY SINE Alu 0 311 1 329 261 113 11 chrX 28958168 28958286 -133641644 - MER5A DNA MER1_type -54 124 8 1045 241 12 19 chrX 28958481 28958738 -133641192 + L1ME3A LINE L1 5916 6170 0 1746 323 171 17 chrX 28958994 28960086 -133639844 + L2 LINE L2 1715 2974 -340 1090 240 83 63 chrX 28960099 28960653 -133639277 + MER34B LTR ERV1 1 565 0 201 328 17 0 chrX 28960654 28960712 -133639218 + L2 LINE L2 2984 3042 -271 1850 151 0 10 chrX 28960727 28961088 -133638842 + AluSx SINE Alu 5 362 0 363 314 31 31 chrX 28961164 28961323 -133638607 + L2 LINE L2 3152 3310 -3 774 301 80 4 chrX 28962063 28962325 -133637605 + LTR16A LTR ERVL 1 282 -168 1332 281 77 44 chrX 28962331 28962826 -133637104 + REP3 LTR ERV 5 515 -47 568 298 0 0 chrX 28962843 28962984 -133636946 + LTR16A LTR ERVL 283 423 -27 1946 142 4 0 chrX 28962984 28963296 -133636634 + AluSp SINE Alu 1 313 0 273 158 0 0 chrX 28963316 28963354 -133636576 + LTR16A LTR ERVL 413 450 0 1292 188 72 14 chrX 28963644 28963803 -133636127 - AluJo SINE Alu -20 292 109 432 0 0 0 chrX 28963803 28963851 -133636079 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1292 188 72 14 chrX 28963851 28963967 -133635963 - AluJo SINE Alu -203 109 1 1992 92 60 0 chrX 28964684 28964968 -133634962 - AluY SINE Alu -10 301 1 189 159 0 0 chrX 28965633 28965677 -133634253 + (TG)n Simple_repeat Simple_repeat 2 45 0 204 272 163 43 chrX 28965688 28965780 -133634150 + MER91A DNA MER1_type 28 130 -66 295 369 119 12 chrX 28966255 28966423 -133633507 + MER91A DNA MER1_type 1 186 -10 210 258 0 0 chrX 28966626 28966688 -133633242 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 241 250 17 43 chrX 28966688 28966707 -133633223 - L1MA4A LINE L1 -2 6301 6283 1225 187 51 29 chrX 28966707 28966980 -133632950 - L1PB4 LINE L1 -1 6155 5877 321 267 0 0 chrX 28967009 28967099 -133632831 + L1MC4 LINE L1 6614 6703 -1339 300 251 26 15 chrX 28967019 28967153 -133632777 - L1MC4 LINE L1 -1139 6646 6541 * 804 264 150 26 chrX 28967222 28967732 -133632198 + L1ME3A LINE L1 5589 6169 -1 440 303 62 45 chrX 28969591 28969835 -133630095 - MIR SINE MIR 0 262 15 351 0 0 0 chrX 28970087 28970126 -133629804 + (TG)n Simple_repeat Simple_repeat 1 39 0 180 302 0 0 chrX 28970343 28970396 -133629534 - L2 LINE L2 -213 3059 3007 424 265 139 6 chrX 28970469 28970635 -133629295 - L1ME1 LINE L1 -2 6164 5977 3931 143 5 9 chrX 28970695 28971340 -133628590 - L1PA15 LINE L1 -3 6162 5521 279 0 0 0 chrX 28974140 28974171 -133625759 + (T)n Simple_repeat Simple_repeat 1 31 0 1118 131 7 6 chrX 28974642 28974838 -133625092 - L1M2 LINE L1 -513 5784 5587 212 238 188 12 chrX 28976503 28976583 -133623347 - MIR3 SINE MIR -23 185 92 944 57 0 0 chrX 28977321 28977445 -133622485 - L1PA4 LINE L1 -1 6154 6031 427 246 59 25 chrX 28977614 28977732 -133622198 - MIR SINE MIR -117 145 24 3237 70 0 16 chrX 28978493 28978935 -133620995 - L1PA8 LINE L1 -3 6169 5735 225 242 8 17 chrX 28979532 28979652 -133620278 + (TA)n Simple_repeat Simple_repeat 2 120 0 1894 26 0 0 chrX 28980504 28980731 -133619199 - L1PA4 LINE L1 -594 5561 5335 4725 46 5 0 chrX 28980731 28981317 -133618613 + L1PA4 LINE L1 5564 6155 0 267 31 0 0 chrX 28981788 28981820 -133618110 + (TA)n Simple_repeat Simple_repeat 2 33 0 336 276 16 49 chrX 28982643 28982766 -133617164 + MIR SINE MIR 8 126 -136 1604 169 47 23 chrX 28983178 28983479 -133616451 + MSTC LTR MaLR 1 308 -120 596 167 0 0 chrX 28983478 28983568 -133616362 + 5S rRNA rRNA 1 90 -31 * 948 118 0 0 chrX 28983565 28983700 -133616230 + MSTC LTR MaLR 293 427 -1 27 49 0 0 chrX 28983947 28983988 -133615942 + AT_rich Low_complexity Low_complexity 1 41 0 313 321 95 23 chrX 28985662 28985864 -133614066 - MIR SINE MIR -2 260 36 884 251 143 101 chrX 28985896 28986590 -133613340 - MER20B DNA MER1_type -5 778 56 223 268 72 31 chrX 28986632 28986729 -133613201 + MIR SINE MIR 160 260 -2 248 261 45 34 chrX 28987913 28988001 -133611929 + MIR3 SINE MIR 110 198 -10 1516 226 69 67 chrX 28988688 28988752 -133611178 - MLT2B1 LTR ERVL -8 512 450 384 71 0 0 chrX 28988752 28988808 -133611122 + (TG)n Simple_repeat Simple_repeat 1 56 0 1516 226 69 67 chrX 28988808 28989253 -133610677 - MLT2B1 LTR ERVL -70 450 2 348 275 67 20 chrX 28989625 28989774 -133610156 + L1ME4a LINE L1 5713 5868 -253 225 271 42 88 chrX 28990269 28990531 -133609399 + L1ME4a LINE L1 5870 6119 -2 191 250 0 0 chrX 28990966 28991006 -133608924 - MIR3 SINE MIR -1 207 168 196 378 51 0 chrX 28993467 28993565 -133606365 - L2 LINE L2 -18 3254 3152 948 207 6 6 chrX 28993619 28993788 -133606142 - MER5A DNA MER1_type 0 189 21 282 326 45 0 chrX 28994383 28994472 -133605458 - MIR SINE MIR -66 142 50 282 252 282 0 chrX 28994527 28994658 -133605272 - HsTC2 DNA Tc2 -1710 188 21 1173 137 5 9 chrX 28994658 28994870 -133605060 + L1MA4 LINE L1 6084 6294 -6 1838 300 130 30 chrX 28996256 28996649 -133603281 + L2 LINE L2 1800 2152 -1161 1875 154 0 23 chrX 28996649 28996954 -133602976 - AluJb SINE Alu -14 298 1 1838 300 130 30 chrX 28996954 28997931 -133601999 + L2 LINE L2 2152 3312 -1 323 252 12 54 chrX 28997951 28998091 -133601839 + MER34B LTR ERV1 31 245 -406 310 264 121 23 chrX 28998287 28998461 -133601469 + MER34 LTR ERV1 352 542 0 737 253 6 0 chrX 28999950 29000108 -133599822 + MER5A DNA MER1_type 31 189 0 1916 142 0 82 chrX 29000116 29000483 -133599447 - MER1B DNA MER1_type 0 337 1 1482 140 20 16 chrX 29000508 29000758 -133599172 + AluSx SINE Alu 50 300 -12 354 358 54 0 chrX 29001332 29001480 -133598450 + L2 LINE L2 3116 3271 -1 783 213 31 0 chrX 29001662 29001822 -133598108 + MER5A DNA MER1_type 1 165 -24 286 304 40 61 chrX 29001694 29001842 -133598088 - MER5A DNA MER1_type -23 166 22 * 286 237 31 41 chrX 29001873 29001970 -133597960 - MER5A DNA MER1_type -56 133 38 339 25 0 0 chrX 29003032 29003072 -133596858 + (TA)n Simple_repeat Simple_repeat 2 41 0 247 294 39 106 chrX 29003618 29003798 -133596132 - MER5A DNA MER1_type 0 189 22 309 304 40 32 chrX 29003835 29003960 -133595970 - MER5A DNA MER1_type -63 126 1 190 217 43 72 chrX 29004052 29004121 -133595809 + L2 LINE L2 3205 3271 -1 423 0 0 0 chrX 29004607 29004654 -133595276 + (TA)n Simple_repeat Simple_repeat 2 48 0 745 173 98 17 chrX 29004716 29004889 -133595041 - MER5A DNA MER1_type -2 187 1 182 379 131 20 chrX 29005051 29005204 -133594726 + L2 LINE L2 3092 3261 -11 215 301 0 41 chrX 29005448 29005521 -133594409 - L2 LINE L2 0 3313 3244 623 346 29 8 chrX 29005548 29005791 -133594139 - MIR SINE MIR -13 249 2 961 324 106 50 chrX 29005974 29007077 -133592853 - L2 LINE L2 0 3313 2140 274 304 113 9 chrX 29007148 29007263 -133592667 - MIR3 SINE MIR -50 158 32 668 205 26 0 chrX 29007287 29007404 -133592526 + MER5A DNA MER1_type 7 126 -63 3339 150 77 11 chrX 29008466 29009086 -133590844 + MER67B LTR ERV1 1 661 0 21 0 0 0 chrX 29009868 29009889 -133590041 + AT_rich Low_complexity Low_complexity 1 21 0 183 100 0 0 chrX 29011087 29011117 -133588813 + (TA)n Simple_repeat Simple_repeat 2 31 0 390 42 0 0 chrX 29011118 29011166 -133588764 + (GA)n Simple_repeat Simple_repeat 1 48 0 709 311 102 38 chrX 29011872 29012312 -133587618 + L2 LINE L2 2700 3175 -138 2210 96 0 0 chrX 29012312 29012625 -133587305 + AluSx SINE Alu 2 314 0 709 311 102 38 chrX 29012625 29012769 -133587161 + L2 LINE L2 3175 3308 -5 252 357 36 18 chrX 29012767 29012879 -133587051 - MIR SINE MIR -86 176 63 * 190 255 174 31 chrX 29013238 29013336 -133586594 + MIR SINE MIR 32 143 -65 23 68 0 0 chrX 29013526 29013570 -133586360 + AT_rich Low_complexity Low_complexity 1 44 0 311 296 23 73 chrX 29013768 29013951 -133585979 - MIR SINE MIR -51 157 21 1538 289 80 34 chrX 29014341 29014391 -133585539 + L2 LINE L2 2019 2065 -1248 339 25 0 0 chrX 29014391 29014431 -133585499 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 2040 118 4 7 chrX 29014433 29014713 -133585217 - AluSg SINE Alu -31 279 1 1538 289 80 34 chrX 29014713 29015728 -133584202 + L2 LINE L2 2065 3308 -5 1601 161 47 7 chrX 29016861 29017135 -133582795 + AluJb SINE Alu 5 289 -23 378 0 0 0 chrX 29017961 29018003 -133581927 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1865 30 0 13 chrX 29018198 29018429 -133581501 + L1PA3 LINE L1 5928 6155 0 419 123 14 0 chrX 29019019 29019092 -133580838 - L1PA16 LINE L1 -2 6164 6091 192 298 60 86 chrX 29019942 29020093 -133579837 + MIR SINE MIR 88 234 -28 198 282 24 35 chrX 29020286 29020371 -133579559 - MIR SINE MIR -144 118 35 756 251 29 18 chrX 29021102 29021408 -133578522 + L1MD3 LINE L1 6050 7982 -13 2323 103 17 3 chrX 29022174 29022524 -133577406 - THE1A LTR MaLR 0 355 1 22 35 0 0 chrX 29022725 29022754 -133577176 + AT_rich Low_complexity Low_complexity 1 29 0 2099 122 0 34 chrX 29022754 29023075 -133576855 + AluSx SINE Alu 1 310 -2 24 32 0 0 chrX 29023226 29023257 -133576673 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chrX 29023284 29023323 -133576607 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 29023369 29023391 -133576539 + AT_rich Low_complexity Low_complexity 1 22 0 360 262 43 35 chrX 29023521 29023662 -133576268 - L2 LINE L2 0 3313 3172 212 318 9 73 chrX 29024684 29024794 -133575136 + L2 LINE L2 3206 3308 -5 2425 48 0 26 chrX 29025140 29025449 -133574481 - AluY SINE Alu -10 301 1 2089 106 0 3 chrX 29026350 29026632 -133573298 + AluSq SINE Alu 1 281 -32 198 71 0 0 chrX 29026632 29026660 -133573270 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 241 244 24 24 chrX 29027562 29027644 -133572286 + MIR SINE MIR 131 212 -50 189 119 68 0 chrX 29027857 29027916 -133572014 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 260 131 0 33 chrX 29027922 29027983 -133571947 + (GGGAGA)n Simple_repeat Simple_repeat 2 60 0 237 159 0 0 chrX 29027993 29028037 -133571893 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 485 259 171 0 chrX 29028073 29028231 -133571699 + MIR SINE MIR 78 262 0 420 314 108 5 chrX 29028315 29028500 -133571430 - MIR SINE MIR 0 262 59 265 222 11 22 chrX 29028695 29028785 -133571145 - L1MC5 LINE L1 -76 7885 7797 396 330 80 35 chrX 29029379 29029470 -133570460 + MIR SINE MIR 7 92 -170 2418 46 13 3 chrX 29029470 29029773 -133570157 - AluY SINE Alu -5 306 1 396 330 80 35 chrX 29029773 29029881 -133570049 + MIR SINE MIR 92 215 -47 458 320 19 0 chrX 29030939 29031095 -133568835 - MIR SINE MIR 0 262 104 432 331 36 27 chrX 29031343 29031787 -133568143 - LTR16C LTR ERVL 0 491 1 199 261 29 14 chrX 29031829 29031898 -133568032 + MIR SINE MIR 174 243 -19 229 151 132 0 chrX 29031909 29031962 -133567968 + MIR SINE MIR 172 231 -31 24 67 0 0 chrX 29032760 29032805 -133567125 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chrX 29035929 29035964 -133563966 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chrX 29036657 29036678 -133563252 + AT_rich Low_complexity Low_complexity 1 21 0 248 235 212 0 chrX 29037337 29037422 -133562508 + L2 LINE L2 3197 3299 -14 396 0 0 0 chrX 29037570 29037614 -133562316 + (CA)n Simple_repeat Simple_repeat 2 45 0 2283 99 0 0 chrX 29037698 29037990 -133561940 + AluSc SINE Alu 3 294 -15 345 47 0 0 chrX 29038228 29038271 -133561659 + (CA)n Simple_repeat Simple_repeat 2 44 0 424 288 123 6 chrX 29039653 29039823 -133560107 + MIR SINE MIR 22 211 -51 768 196 0 0 chrX 29039849 29039982 -133559948 + FLAM_A SINE Alu 1 133 0 384 223 85 0 chrX 29040045 29040139 -133559791 - MER5A DNA MER1_type -77 112 11 180 374 48 41 chrX 29040235 29040382 -133559548 - L2 LINE L2 -4 3268 3121 1497 231 65 18 chrX 29040391 29040837 -133559093 + MER110A LTR ERV1 2 468 0 595 241 146 6 chrX 29041414 29041572 -133558358 + MER5A DNA MER1_type 9 188 -1 324 253 0 40 chrX 29041596 29041671 -133558259 - L2 LINE L2 -556 2758 2687 2070 118 0 40 chrX 29041807 29042128 -133557802 - AluSx SINE Alu 0 312 5 324 394 97 5 chrX 29042976 29043192 -133556738 + MIR SINE MIR 21 256 -6 333 258 55 10 chrX 29043440 29043576 -133556354 - MIR SINE MIR -7 201 48 1304 75 0 0 chrX 29043618 29043791 -133556139 + L1PA8 LINE L1 6000 6172 0 1756 99 107 33 chrX 29044188 29044460 -133555470 - AluSp SINE Alu -4 309 18 1149 300 77 11 chrX 29044515 29044981 -133554949 + L2 LINE L2 2201 2697 -617 1142 225 51 33 chrX 29045000 29045333 -133554597 + L1MD2 LINE L1 5911 6249 -110 618 207 28 45 chrX 29045333 29045512 -133554418 + L1MD2 LINE L1 6172 6347 -12 504 280 32 0 chrX 29045538 29045663 -133554267 + L2 LINE L2 2926 3054 -259 409 246 26 0 chrX 29045669 29045776 -133554154 + AluJ/FLAM SINE Alu 1 88 -214 10338 115 36 7 chrX 29045786 29047304 -133552626 + THE1C-int LTR MaLR 19 1580 0 2236 119 13 46 chrX 29047304 29047692 -133552238 + THE1C LTR MaLR 1 375 0 621 267 94 55 chrX 29047692 29047770 -133552160 + L2 LINE L2 2995 3068 -245 1652 195 3 13 chrX 29047770 29048083 -133551847 + AluJo SINE Alu 1 310 -2 621 267 94 55 chrX 29048083 29048311 -133551619 + L2 LINE L2 3068 3313 0 422 263 8 30 chrX 29048975 29049108 -133550822 + MIR SINE MIR 67 196 -66 180 97 0 0 chrX 29050138 29050169 -133549761 + (A)n Simple_repeat Simple_repeat 1 31 0 2116 126 0 3 chrX 29051786 29052072 -133547858 + AluSx SINE Alu 1 285 -27 30 0 0 0 chrX 29052072 29052102 -133547828 + AT_rich Low_complexity Low_complexity 1 30 0 243 254 56 42 chrX 29052131 29052202 -133547728 + LTR33A LTR ERVL 347 418 -105 321 195 13 39 chrX 29052351 29052428 -133547502 - MER20 DNA MER1_type -144 75 1 28 0 0 0 chrX 29052718 29052746 -133547184 + AT_rich Low_complexity Low_complexity 1 28 0 411 21 0 0 chrX 29054615 29054663 -133545267 + (TG)n Simple_repeat Simple_repeat 2 49 0 2298 82 0 0 chrX 29054938 29055219 -133544711 - AluSc SINE Alu -28 281 1 904 221 22 49 chrX 29055964 29056190 -133543740 + MER58A DNA MER1_type 4 223 -1 821 137 143 28 chrX 29056715 29056897 -133543033 + LTR12 LTR ERV1 1 203 -511 364 260 10 0 chrX 29056966 29057066 -133542864 + LTR30 LTR ERV1 524 624 -98 734 173 23 15 chrX 29057066 29057199 -133542731 + LTR12 LTR ERV1 359 492 -222 446 355 158 8 chrX 29057527 29057927 -133542003 + L2 LINE L2 2850 3309 -4 393 326 81 92 chrX 29058324 29059041 -133540889 + L2 LINE L2 2257 2965 -349 246 81 0 0 chrX 29059158 29059195 -133540735 + (TC)n Simple_repeat Simple_repeat 1 37 0 257 261 9 117 chrX 29059249 29059360 -133540570 + L2 LINE L2 3172 3270 -2 1622 210 26 47 chrX 29059885 29060375 -133539555 - L1MA9 LINE L1 -38 6274 5795 306 0 0 0 chrX 29060379 29060413 -133539517 + (TG)n Simple_repeat Simple_repeat 2 35 0 411 21 0 0 chrX 29060489 29060537 -133539393 + (TC)n Simple_repeat Simple_repeat 1 48 0 22 35 0 0 chrX 29060594 29060623 -133539307 + AT_rich Low_complexity Low_complexity 1 29 0 2262 132 8 48 chrX 29061185 29061564 -133538366 + THE1B LTR MaLR 1 364 0 2254 116 22 24 chrX 29062144 29062515 -133537415 - THE1C LTR MaLR -2 373 4 182 247 226 32 chrX 29064750 29064843 -133535087 - MIR SINE MIR -120 142 32 345 82 0 0 chrX 29065278 29065327 -133534603 + (TA)n Simple_repeat Simple_repeat 1 49 0 389 270 43 31 chrX 29065647 29065810 -133534120 - Charlie2 DNA MER1_type 0 2862 2698 2094 233 61 5 chrX 29065815 29066419 -133533511 - Charlie2 DNA MER1_type -360 2502 1865 704 211 51 120 chrX 29066437 29066712 -133533218 - Charlie2 DNA MER1_type -2606 256 1 281 286 66 0 chrX 29067002 29067093 -133532837 + MIR SINE MIR 35 131 -131 284 333 10 10 chrX 29067093 29067189 -133532741 - MER5B DNA MER1_type 0 178 83 339 350 51 45 chrX 29069861 29070175 -133529755 - L1 LINE L1 -835 5311 4996 758 209 0 13 chrX 29071136 29071289 -133528641 + MER58B DNA MER1_type 176 326 -15 323 353 18 50 chrX 29071324 29071542 -133528388 - MIR SINE MIR -26 236 26 592 41 0 0 chrX 29071609 29071682 -133528248 - L1PA5 LINE L1 -5 6149 6077 901 212 86 0 chrX 29071756 29071954 -133527976 + MER20 DNA MER1_type 1 215 -4 348 316 53 8 chrX 29072039 29072172 -133527758 + L2 LINE L2 3175 3313 0 207 0 0 0 chrX 29072275 29072298 -133527632 + (TA)n Simple_repeat Simple_repeat 1 23 0 763 337 67 22 chrX 29072673 29073077 -133526853 - L3 LINE CR1 -3 1574 1153 322 320 39 0 chrX 29073207 29073310 -133526620 - L2 LINE L2 -10 3303 3197 1689 178 33 6 chrX 29073313 29073644 -133526286 + MER2 DNA MER2_type 1 340 -5 2504 138 31 0 chrX 29074596 29075010 -133524920 + MSTA LTR MaLR 2 428 0 1134 222 61 33 chrX 29075907 29076268 -133523662 - L1ME2 LINE L1 -1 6163 5793 576 339 115 37 chrX 29076383 29077141 -133522789 - L2 LINE L2 -340 2974 2158 2510 55 0 7 chrX 29078417 29078726 -133521204 + AluY SINE Alu 1 307 -4 1508 115 0 21 chrX 29078889 29079132 -133520798 - L1MA2 LINE L1 0 6304 6067 22 56 0 0 chrX 29079390 29079426 -133520504 + AT_rich Low_complexity Low_complexity 1 36 0 1308 134 79 12 chrX 29079434 29079688 -133520242 - L1MA8 LINE L1 -10 6281 6011 778 196 86 121 chrX 29079998 29080451 -133519479 + LTR37B LTR ERV1 6 442 -26 1625 189 27 0 chrX 29081310 29081480 -133518450 - AluSx SINE Alu -7 305 122 207 0 0 0 chrX 29081480 29081503 -133518427 + (TG)n Simple_repeat Simple_repeat 2 24 0 1625 189 27 0 chrX 29081503 29081629 -133518301 - AluSx SINE Alu -190 122 1 736 232 131 0 chrX 29082282 29082541 -133517389 - MER33 DNA MER1_type -31 293 1 1704 154 67 26 chrX 29082733 29083045 -133516885 - MER44D DNA MER2_type 0 609 15 267 257 43 14 chrX 29083706 29083776 -133516154 + L2 LINE L2 3234 3305 -8 2335 92 0 0 chrX 29084020 29084323 -133515607 - AluSc SINE Alu -6 303 1 25 0 0 0 chrX 29085592 29085617 -133514313 + AT_rich Low_complexity Low_complexity 1 25 0 210 353 0 15 chrX 29085876 29085944 -133513986 + MIR SINE MIR 49 115 -147 1843 142 153 24 chrX 29086277 29086650 -133513280 - MSTB LTR MaLR 0 426 6 414 0 0 0 chrX 29086650 29086696 -133513234 + (TC)n Simple_repeat Simple_repeat 1 46 0 393 22 0 0 chrX 29086695 29086741 -133513189 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 306 209 132 44 chrX 29087311 29087402 -133512528 + L2 LINE L2 3171 3269 -3 240 111 0 0 chrX 29088051 29088096 -133511834 + (ATG)n Simple_repeat Simple_repeat 3 47 0 1175 214 165 26 chrX 29088835 29089181 -133510749 + MSTD LTR MaLR 1 394 -2 293 276 86 52 chrX 29090368 29090484 -133509446 + L2 LINE L2 3146 3265 -7 311 287 83 120 chrX 29090704 29091147 -133508783 - L2 LINE L2 0 3313 2887 274 229 136 34 chrX 29092393 29092511 -133507419 + LTR16C LTR ERVL 1 130 -361 415 324 183 14 chrX 29094088 29094301 -133505629 - MIR SINE MIR -11 251 3 2051 118 21 0 chrX 29095378 29095667 -133504263 + AluSq SINE Alu 1 295 -18 547 198 29 150 chrX 29095801 29096008 -133503922 + L1MEc LINE L1 168 349 -6214 3776 217 36 19 chrX 29096019 29096958 -133502972 + L1MEc LINE L1 466 1420 -5143 305 298 25 0 chrX 29096971 29097092 -133502838 + L1MEc LINE L1 1317 1440 -4944 303 306 12 0 chrX 29097094 29097179 -133502751 + LTR16A LTR ERVL 365 450 0 21 36 0 0 chrX 29097283 29097311 -133502619 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 29099064 29099085 -133500845 + AT_rich Low_complexity Low_complexity 1 21 0 1145 169 16 16 chrX 29099230 29099478 -133500452 + L1MA6 LINE L1 6050 6297 -3 279 189 27 0 chrX 29099478 29099552 -133500378 - L1MC5 LINE L1 -272 7689 7614 557 198 23 119 chrX 29099824 29100001 -133499929 + MER5B DNA MER1_type 19 178 0 483 282 64 50 chrX 29100301 29100521 -133499409 - MIR SINE MIR -6 256 34 26 0 0 0 chrX 29101198 29101224 -133498706 + AT_rich Low_complexity Low_complexity 1 26 0 275 324 0 0 chrX 29101696 29101770 -133498160 + MER115 DNA AcHobo 369 442 -251 23 0 0 0 chrX 29102325 29102348 -133497582 + AT_rich Low_complexity Low_complexity 1 23 0 215 278 0 19 chrX 29103151 29103205 -133496725 + MIR SINE MIR 154 206 -56 22 35 0 0 chrX 29103221 29103250 -133496680 + AT_rich Low_complexity Low_complexity 1 29 0 3973 132 4 45 chrX 29103254 29103937 -133495993 - L1PB3 LINE L1 -9 6145 5491 1339 214 21 0 chrX 29103937 29104268 -133495662 + L1 LINE L1 2962 3299 -2847 1094 220 101 46 chrX 29104781 29105127 -133494803 - MLT1A1 LTR MaLR 0 365 1 1049 272 23 66 chrX 29105128 29105565 -133494365 - L1ME LINE L1 -406 5764 5347 537 303 26 24 chrX 29105705 29106085 -133493845 - L1ME LINE L1 -804 5342 4962 33 0 0 0 chrX 29106249 29106282 -133493648 + AT_rich Low_complexity Low_complexity 1 33 0 289 341 152 41 chrX 29106790 29106842 -133493088 + L2 LINE L2 2172 2217 -1097 703 289 28 5 chrX 29106842 29107060 -133492870 - MER58A DNA MER1_type 0 224 2 289 341 152 41 chrX 29107060 29107208 -133492722 + L2 LINE L2 2217 2347 -967 2401 132 43 14 chrX 29107208 29107624 -133492306 + MSTA LTR MaLR 1 428 0 289 341 152 41 chrX 29107624 29107791 -133492139 + L2 LINE L2 2347 2581 -733 357 401 29 17 chrX 29108115 29108287 -133491643 + L2 LINE L2 3099 3272 0 273 317 42 17 chrX 29108323 29108443 -133491487 + MIR SINE MIR 66 188 -74 360 64 0 0 chrX 29108950 29108997 -133490933 + (TA)n Simple_repeat Simple_repeat 2 48 0 2145 154 11 5 chrX 29109032 29109402 -133490528 + L1PB4 LINE L1 5785 6156 0 346 295 23 23 chrX 29110566 29110695 -133489235 - MIR SINE MIR -30 232 104 1102 180 35 104 chrX 29111272 29111363 -133488567 - L1MA10 LINE L1 0 6334 6238 405 0 0 0 chrX 29111363 29111408 -133488522 + (TA)n Simple_repeat Simple_repeat 2 46 0 1102 180 35 104 chrX 29111408 29111661 -133488269 - L1MA10 LINE L1 -96 6238 6014 2312 52 0 3 chrX 29111906 29112226 -133487704 - AluY SINE Alu 0 319 1 511 301 107 15 chrX 29112320 29112526 -133487404 + MIR SINE MIR 21 245 -17 243 397 33 8 chrX 29114717 29114838 -133485092 - L2 LINE L2 0 3272 3149 366 310 54 23 chrX 29114872 29115001 -133484929 + LTR16C LTR ERVL 1 133 -358 1937 130 10 0 chrX 29115270 29115611 -133484319 - AluSp SINE Alu 0 313 1 402 250 152 0 chrX 29116102 29116214 -133483716 - MER5B DNA MER1_type -1 177 49 232 333 162 0 chrX 29116526 29116637 -133483293 - MIR SINE MIR -86 176 48 3351 136 4 9 chrX 29116657 29117187 -133482743 - MER1A DNA MER1_type 0 527 1 279 279 136 15 chrX 29117965 29118144 -133481786 - L1ME LINE L1 -536 5634 5411 2129 104 84 6 chrX 29118144 29118479 -133481451 + THE1B LTR MaLR 2 362 -2 279 279 136 15 chrX 29118479 29118564 -133481366 - L1ME LINE L1 -759 5411 5338 391 270 62 28 chrX 29118584 29118795 -133481135 - L1ME LINE L1 -823 5323 5106 23 0 0 0 chrX 29118829 29118852 -133481078 + AT_rich Low_complexity Low_complexity 1 23 0 564 305 69 0 chrX 29119011 29119214 -133480716 - HAL1 LINE L1 -547 1960 1744 804 301 33 64 chrX 29119217 29119636 -133480294 + MLT1I LTR MaLR 4 409 0 240 259 144 36 chrX 29119669 29119808 -133480122 - HAL1 LINE L1 -760 1747 1594 1217 251 97 65 chrX 29119808 29120346 -133479584 - MLT1F1 LTR MaLR 0 567 13 1426 231 84 109 chrX 29120377 29120700 -133479230 - HAL1 LINE L1 -937 1570 1241 660 277 79 0 chrX 29120700 29120902 -133479028 - MER20 DNA MER1_type 0 219 2 1426 231 84 109 chrX 29120902 29121028 -133478902 - HAL1 LINE L1 -1266 1241 1113 1823 153 0 19 chrX 29121028 29121349 -133478581 - L1MC1 LINE L1 -1 6332 6018 504 228 0 0 chrX 29121351 29121465 -133478465 + L1PB4 LINE L1 6041 6154 -2 1426 231 84 109 chrX 29121465 29121911 -133478019 - HAL1 LINE L1 -1395 1112 693 1862 171 53 4 chrX 29121911 29122257 -133477673 + MLT1A1 LTR MaLR 1 426 -2 573 319 55 44 chrX 29122330 29122694 -133477236 - HAL1 LINE L1 -1902 605 238 231 356 59 0 chrX 29122726 29122861 -133477069 - HAL1 LINE L1 -2364 143 1 392 177 8 31 chrX 29124596 29124726 -133475204 + GA-rich Low_complexity Low_complexity 4 130 0 243 146 0 0 chrX 29124736 29124777 -133475153 + (CAGG)n Simple_repeat Simple_repeat 1 41 0 983 210 139 0 chrX 29125172 29125439 -133474491 + MER63 DNA MER1_type 714 1017 -44 17479 28 0 0 chrX 29125637 29128492 -133471438 - L1PA2 LINE L1 -1 6154 3304 218 257 191 57 chrX 29128655 29128760 -133471170 + MER5B DNA MER1_type 60 178 0 389 238 29 91 chrX 29128809 29129019 -133470911 - L1MC5 LINE L1 -48 7913 7717 257 321 95 91 chrX 29129274 29129570 -133470360 + L2 LINE L2 2974 3270 -2 484 248 62 16 chrX 29131219 29131348 -133468582 - MIR SINE MIR -111 151 17 579 316 197 44 chrX 29132426 29132540 -133467390 + L2 LINE L2 2009 2104 -1209 2630 55 3 6 chrX 29132540 29132885 -133467045 + L1PA7 LINE L1 5811 6154 0 579 316 197 44 chrX 29132885 29133369 -133466561 + L2 LINE L2 2104 2512 -801 1438 182 0 84 chrX 29133369 29133704 -133466226 + AluJo SINE Alu 2 308 -4 579 316 197 44 chrX 29133704 29134165 -133465765 + L2 LINE L2 2512 3245 -68 1029 119 0 0 chrX 29134264 29134557 -133465373 + (TA)n Simple_repeat Simple_repeat 1 294 0 382 260 6 0 chrX 29134559 29134671 -133465259 + L1MC4 LINE L1 6613 6705 -1337 2305 99 0 0 chrX 29135306 29135600 -133464330 - AluSg SINE Alu -14 296 3 2156 126 0 0 chrX 29135720 29136022 -133463908 - AluSx SINE Alu -10 302 1 2136 173 154 21 chrX 29136510 29137037 -133462893 - L1MB3 LINE L1 -1 6182 5586 948 181 0 44 chrX 29137047 29137229 -133462701 + MER58B DNA MER1_type 168 341 0 5765 100 6 36 chrX 29137722 29138628 -133461302 - L1P LINE L1 -3553 2593 1716 7338 110 6 0 chrX 29138631 29140504 -133459426 + L1PA7 LINE L1 4276 6152 -2 24 0 0 0 chrX 29141226 29141250 -133458680 + AT_rich Low_complexity Low_complexity 1 24 0 350 251 90 33 chrX 29141904 29142079 -133457851 + MLT1J2 LTR MaLR 246 432 -14 31 0 0 0 chrX 29143591 29143622 -133456308 + AT_rich Low_complexity Low_complexity 1 31 0 385 239 15 45 chrX 29143912 29144046 -133455884 + L1ME1 LINE L1 5872 6001 -165 638 203 14 0 chrX 29144065 29144213 -133455717 + L1MA10 LINE L1 6185 6334 0 882 341 36 30 chrX 29144307 29144747 -133455183 + LTR16A LTR ERVL 2 444 -6 25 0 0 0 chrX 29145542 29145567 -133454363 + AT_rich Low_complexity Low_complexity 1 25 0 2478 115 13 11 chrX 29145703 29146077 -133453853 + THE1C LTR MaLR 1 375 0 9785 109 28 63 chrX 29146077 29147715 -133452215 + THE1C-int LTR MaLR 1 1580 0 2576 104 13 13 chrX 29147715 29148090 -133451840 + THE1C LTR MaLR 1 375 0 1377 278 23 45 chrX 29149874 29150345 -133449585 + LTR16C LTR ERVL 31 491 0 4047 159 20 20 chrX 29150539 29151250 -133448680 + MER50 LTR ERV1 1 711 -23 310 364 21 7 chrX 29152237 29152377 -133447553 + MLT1J LTR MaLR 100 241 -308 222 118 0 0 chrX 29153305 29153339 -133446591 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 281 268 235 20 chrX 29154284 29154437 -133445493 + MIR SINE MIR 48 233 -29 249 33 0 0 chrX 29154959 29154989 -133444941 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 565 239 60 0 chrX 29154992 29155126 -133444804 + FLAM_A SINE Alu 1 142 0 753 246 107 48 chrX 29155155 29155444 -133444486 + MLT1J LTR MaLR 9 314 -197 366 304 9 0 chrX 29155506 29155621 -133444309 + MLT1J LTR MaLR 394 509 -2 21 0 0 0 chrX 29157233 29157254 -133442676 + AT_rich Low_complexity Low_complexity 1 21 0 3966 223 10 12 chrX 29157473 29158292 -133441638 + L1MA2 LINE L1 12 828 -6737 1991 158 0 0 chrX 29158321 29158625 -133441305 + AluSx SINE Alu 3 306 -6 185 94 31 0 chrX 29158630 29158662 -133441268 + A-rich Low_complexity Low_complexity 3 35 0 5596 206 19 30 chrX 29158664 29160056 -133439874 + L1MA2 LINE L1 3598 4973 -2592 1682 25 0 0 chrX 29160110 29160352 -133439578 + L1P1 LINE L1 5190 5431 -724 * 6739 128 17 5 chrX 29160342 29161634 -133438296 + L1MA2 LINE L1 6405 7713 -10 586 127 0 66 chrX 29161688 29161869 -133438061 + (TA)n Simple_repeat Simple_repeat 1 169 0 807 246 70 18 chrX 29163116 29163400 -133436530 - L1ME3A LINE L1 -9 6161 5863 282 349 55 0 chrX 29164437 29164546 -133435384 + MIR3 SINE MIR 73 187 -21 350 286 27 9 chrX 29164594 29164706 -133435224 + MLT1I LTR MaLR 20 133 -276 250 307 35 44 chrX 29164883 29164997 -133434933 + MLT1J LTR MaLR 421 533 -16 965 261 9 0 chrX 29165343 29165565 -133434365 + MER58A DNA MER1_type 1 224 0 181 209 90 30 chrX 29166061 29166128 -133433802 + L2 LINE L2 3141 3211 -61 671 308 42 8 chrX 29166207 29166444 -133433486 - MIR SINE MIR -3 259 15 692 203 47 14 chrX 29167102 29167250 -133432680 - FRAM SINE Alu -15 161 9 2013 122 4 0 chrX 29167376 29167677 -133432253 - AluSx SINE Alu 0 305 4 262 306 126 9 chrX 29167765 29167876 -133432054 - L2 LINE L2 -23 3290 3167 192 289 0 19 chrX 29168048 29168100 -133431830 - L2 LINE L2 -226 3046 2996 2136 260 130 43 chrX 29169528 29170359 -133429571 + L2 LINE L2 1897 2799 -515 4891 85 43 34 chrX 29170359 29171097 -133428833 + MER41B-int LTR ERV1 5202 5946 0 3539 117 13 9 chrX 29171097 29171643 -133428287 + MER41B LTR ERV1 1 548 -87 777 330 119 25 chrX 29171648 29172145 -133427785 + L2 LINE L2 2771 3313 0 541 232 84 71 chrX 29172897 29173194 -133426736 - L1MC5 LINE L1 -50 7911 7611 266 272 60 86 chrX 29173225 29173493 -133426437 - L2 LINE L2 -793 2521 2261 2141 59 0 26 chrX 29173979 29174252 -133425678 - AluY SINE Alu -8 303 38 811 114 9 0 chrX 29175399 29175513 -133424417 + L1PA16 LINE L1 6033 6147 -19 211 194 0 0 chrX 29176095 29176131 -133423799 + (TG)n Simple_repeat Simple_repeat 2 37 0 2181 104 3 0 chrX 29177792 29178080 -133421850 + AluSq SINE Alu 1 289 -24 1911 283 66 37 chrX 29178864 29178918 -133421012 - L2 LINE L2 0 3313 3262 446 0 19 0 chrX 29178918 29178972 -133420958 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2127 93 4 4 chrX 29178974 29179254 -133420676 - AluSg SINE Alu -30 280 1 1911 283 66 37 chrX 29179254 29180263 -133419667 - L2 LINE L2 -51 3262 2224 712 305 61 4 chrX 29181265 29181511 -133418419 + MIR SINE MIR 1 260 -2 249 119 0 0 chrX 29182906 29182948 -133416982 + (A)n Simple_repeat Simple_repeat 1 42 0 1748 173 106 3 chrX 29183772 29184101 -133415829 + MER47A DNA MER2_type 1 363 -3 201 301 41 68 chrX 29184451 29184597 -133415333 - MIR SINE MIR -37 225 84 331 308 11 0 chrX 29184988 29185079 -133414851 - L2 LINE L2 0 3313 3222 1178 285 98 34 chrX 29187191 29187949 -133411981 + L2 LINE L2 2513 3313 0 202 235 0 19 chrX 29188304 29188414 -133411516 + CT-rich Low_complexity Low_complexity 1 107 0 424 280 42 14 chrX 29188414 29188557 -133411373 - L1M4 LINE L1 -1984 4162 4016 616 342 112 14 chrX 29188800 29189221 -133410709 - LTR16C LTR ERVL 0 491 30 207 100 0 0 chrX 29189760 29189790 -133410140 + (TA)n Simple_repeat Simple_repeat 2 31 0 14444 91 34 0 chrX 29194310 29197212 -133402718 + L1PA7 LINE L1 3187 6154 0 309 177 135 21 chrX 29197553 29197649 -133402281 - L1MA1 LINE L1 -312 5990 5884 222 220 20 0 chrX 29201067 29201117 -133398813 + L2 LINE L2 3263 3313 0 277 259 59 0 chrX 29201479 29201564 -133398366 - MER103 DNA DNA -59 107 18 809 214 39 34 chrX 29202039 29202245 -133397685 - MER3 DNA MER1_type -1 208 2 180 0 0 0 chrX 29203348 29203368 -133396562 + (CAA)n Simple_repeat Simple_repeat 2 21 0 647 275 42 108 chrX 29203474 29203972 -133395958 + HAL1 LINE L1 903 1346 -1161 1494 188 7 14 chrX 29203972 29204282 -133395648 + AluJo SINE Alu 9 316 0 647 275 42 108 chrX 29204282 29204470 -133395460 + HAL1 LINE L1 1346 1545 -962 1829 186 21 3 chrX 29204683 29205021 -133394909 - MER2 DNA MER2_type 0 344 1 23 33 0 0 chrX 29205193 29205223 -133394707 + AT_rich Low_complexity Low_complexity 1 30 0 1911 127 22 6 chrX 29205657 29205979 -133393951 + L1MA4A LINE L1 5972 6298 -5 380 355 24 24 chrX 29206168 29206458 -133393472 + L1M4 LINE L1 2318 2607 -3539 802 78 0 0 chrX 29207489 29207592 -133392338 - AluSg/x SINE Alu -10 302 200 2086 117 0 7 chrX 29208310 29208609 -133391321 + AluSx SINE Alu 1 297 -15 180 179 0 0 chrX 29208693 29208732 -133391198 + CT-rich Low_complexity Low_complexity 3 41 0 22 0 0 0 chrX 29209608 29209630 -133390300 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chrX 29210711 29210736 -133389194 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 603 326 51 43 chrX 29210744 29211158 -133388772 - L2 LINE L2 -20 3293 2877 247 208 0 0 chrX 29212422 29212470 -133387460 + L2 LINE L2 3224 3271 -1 495 316 146 40 chrX 29213879 29214101 -133385829 - L2 LINE L2 -1 3312 3115 299 25 25 0 chrX 29214101 29214141 -133385789 + (TG)n Simple_repeat Simple_repeat 1 41 0 495 316 146 40 chrX 29214141 29214526 -133385404 - L2 LINE L2 -198 3115 2646 344 299 84 13 chrX 29214604 29214758 -133385172 - L2 LINE L2 -1108 2206 2042 379 323 48 33 chrX 29214870 29215155 -133384775 - L1MEc LINE L1 -857 1719 1535 24 32 0 0 chrX 29215627 29215658 -133384272 + AT_rich Low_complexity Low_complexity 1 31 0 305 277 89 9 chrX 29216477 29216589 -133383341 - MER103 DNA DNA -45 121 1 333 323 71 13 chrX 29216634 29216789 -133383141 + MIR SINE MIR 49 212 -50 904 184 6 0 chrX 29216896 29217059 -133382871 - AluSg/x SINE Alu -19 293 130 446 157 63 0 chrX 29217059 29217218 -133382712 + (TA)n Simple_repeat Simple_repeat 2 170 0 314 131 62 35 chrX 29217311 29217456 -133382474 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 214 194 83 0 chrX 29217462 29217534 -133382396 + (TA)n Simple_repeat Simple_repeat 1 78 0 413 206 71 24 chrX 29217570 29217740 -133382190 + (TA)n Simple_repeat Simple_repeat 1 178 0 318 217 50 50 chrX 29217744 29217905 -133382025 + (TATATG)n Simple_repeat Simple_repeat 2 162 0 628 112 20 0 chrX 29217905 29218003 -133381927 - AluS SINE Alu -213 100 1 561 311 153 43 chrX 29218460 29219086 -133380844 - L2 LINE L2 -338 2976 2282 274 278 121 60 chrX 29219615 29219863 -133380067 - L1MEc LINE L1 -4641 1755 1493 288 291 221 17 chrX 29220789 29220961 -133378969 - MIR SINE MIR -50 212 6 192 200 0 0 chrX 29221797 29221842 -133378088 + (CCTA)n Simple_repeat Simple_repeat 1 45 0 198 74 0 0 chrX 29222131 29222158 -133377772 - L2 LINE L2 -13 3300 3274 250 253 25 25 chrX 29222823 29222902 -133377028 - MER116 DNA Mariner -1 79 1 22 35 0 0 chrX 29229770 29229799 -133370131 + AT_rich Low_complexity Low_complexity 1 29 0 854 271 102 0 chrX 29232607 29232832 -133367098 + MIR SINE MIR 15 262 0 213 267 151 48 chrX 29232942 29233088 -133366842 + L3 LINE CR1 371 531 -1046 307 292 10 10 chrX 29233710 29233806 -133366124 + L3 LINE CR1 1285 1380 -197 833 234 117 3 chrX 29233994 29234284 -133365646 - MER33 DNA MER1_type -1 323 1 26 74 0 0 chrX 29236223 29236277 -133363653 + AT_rich Low_complexity Low_complexity 1 54 0 27 0 0 0 chrX 29236298 29236325 -133363605 + AT_rich Low_complexity Low_complexity 1 27 0 210 298 0 0 chrX 29236762 29236819 -133363111 + CT-rich Low_complexity Low_complexity 4 60 0 30 27 0 0 chrX 29237598 29237635 -133362295 + AT_rich Low_complexity Low_complexity 1 37 0 243 0 0 0 chrX 29238067 29238094 -133361836 + (A)n Simple_repeat Simple_repeat 1 27 0 2169 103 3 7 chrX 29238574 29238876 -133361054 - AluSx SINE Alu -11 301 1 776 219 7 0 chrX 29239008 29239024 -133360906 + MER5A DNA MER1_type 1 17 -172 292 307 49 43 chrX 29239024 29239187 -133360743 - MER5A DNA MER1_type -2 187 24 233 379 21 0 chrX 29239181 29239276 -133360654 + L2 LINE L2 2537 2633 -681 * 375 60 0 0 chrX 29239337 29239387 -133360543 + (CA)n Simple_repeat Simple_repeat 1 50 0 309 284 46 72 chrX 29240584 29240804 -133359126 - MIR SINE MIR -46 216 4 68 24 0 0 chrX 29241532 29241614 -133358316 + AT_rich Low_complexity Low_complexity 1 82 0 1866 130 4 0 chrX 29242193 29242469 -133357461 + AluSx SINE Alu 1 277 -35 261 0 0 0 chrX 29242488 29242517 -133357413 + (TAA)n Simple_repeat Simple_repeat 2 30 0 237 119 0 0 chrX 29244251 29244293 -133355637 + (GA)n Simple_repeat Simple_repeat 1 42 0 322 241 11 0 chrX 29244699 29244786 -133355144 + GA-rich Low_complexity Low_complexity 2 89 0 240 208 21 0 chrX 29246118 29246166 -133353764 + GA-rich Low_complexity Low_complexity 3 51 0 23 33 0 0 chrX 29246542 29246572 -133353358 + AT_rich Low_complexity Low_complexity 1 30 0 32 81 0 0 chrX 29247099 29247173 -133352757 + AT_rich Low_complexity Low_complexity 1 74 0 1717 227 45 18 chrX 29247269 29247763 -133352167 - Charlie4a DNA MER1_type 0 508 2 261 381 122 0 chrX 29248794 29248933 -133350997 - MER91A DNA MER1_type -37 159 4 188 300 125 25 chrX 29248933 29249001 -133350929 - L2 LINE L2 -48 3265 3190 337 221 0 0 chrX 29249144 29249221 -133350709 + HsTC2 DNA Tc2 222 298 -1600 274 279 25 0 chrX 29249223 29249302 -133350628 + HsTC2 DNA Tc2 492 572 -1326 306 269 32 86 chrX 29251808 29251994 -133347936 + MER104 DNA Tc2 1 176 -4 567 200 0 10 chrX 29252677 29252777 -133347153 + MER5B DNA MER1_type 78 176 -2 313 323 0 0 chrX 29253929 29254028 -133345902 - L2 LINE L2 -9 3304 3206 1271 255 43 6 chrX 29255072 29255401 -133344529 - MER58B DNA MER1_type 0 341 1 3394 196 10 6 chrX 29255645 29256509 -133343421 - L1P4 LINE L1 -665 5501 4635 381 130 29 0 chrX 29256509 29256576 -133343354 + L1PA16 LINE L1 6093 6163 -3 1894 137 20 3 chrX 29257685 29257985 -133341945 + AluSq SINE Alu 1 305 -8 493 160 0 11 chrX 29259440 29259534 -133340396 + L1MA3 LINE L1 6213 6305 0 33 0 0 0 chrX 29259808 29259841 -133340089 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chrX 29260090 29260117 -133339813 + AT_rich Low_complexity Low_complexity 1 27 0 29 47 0 0 chrX 29260325 29260368 -133339562 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chrX 29262484 29262517 -133337413 + AT_rich Low_complexity Low_complexity 1 33 0 204 97 0 0 chrX 29264047 29264078 -133335852 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chrX 29264805 29264826 -133335104 + AT_rich Low_complexity Low_complexity 1 21 0 309 292 114 0 chrX 29264840 29264991 -133334939 + MLT1A2 LTR MaLR 188 379 -11 27 0 0 0 chrX 29265788 29265815 -133334115 + AT_rich Low_complexity Low_complexity 1 27 0 3583 177 20 4 chrX 29266605 29267301 -133332629 + L1 LINE L1 4503 5209 -937 231 232 0 0 chrX 29267819 29267875 -133332055 + L1MC4 LINE L1 6648 6703 -1339 381 323 0 24 chrX 29268533 29268660 -133331270 - L2 LINE L2 0 3313 3190 241 158 0 0 chrX 29268905 29268943 -133330987 - tRNA-Gly-GGA tRNA tRNA -37 38 1 251 320 0 0 chrX 29268994 29269069 -133330861 + (TATG)n Simple_repeat Simple_repeat 2 76 0 21 82 0 0 chrX 29270236 29270285 -133329645 + AT_rich Low_complexity Low_complexity 1 49 0 250 283 17 0 chrX 29270707 29270767 -133329163 + MIR SINE MIR 32 92 -170 21 57 0 0 chrX 29270924 29270959 -133328971 + AT_rich Low_complexity Low_complexity 1 35 0 445 162 0 0 chrX 29271997 29272065 -133327865 + AluS SINE Alu 1 68 -245 216 0 0 0 chrX 29272364 29272388 -133327542 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 670 193 0 0 chrX 29272388 29272507 -133327423 - FLAM_C SINE Alu -24 119 1 2077 118 0 3 chrX 29273930 29274247 -133325683 - AluSx SINE Alu 0 316 1 774 263 132 63 chrX 29274248 29274753 -133325177 + MLT1G1 LTR MaLR 5 504 -63 188 314 118 29 chrX 29276022 29276124 -133323806 + MIR SINE MIR 47 157 -105 261 98 0 0 chrX 29276589 29276630 -133323300 + (A)n Simple_repeat Simple_repeat 1 41 0 231 244 221 16 chrX 29276674 29276801 -133323129 - MIR SINE MIR -44 218 66 1404 55 0 11 chrX 29277085 29277268 -133322662 + L1PA5 LINE L1 5968 6148 -6 501 255 59 7 chrX 29277535 29277688 -133322242 + MER69A DNA AcHobo 2 162 -15 271 234 170 0 chrX 29278173 29278267 -133321663 + MER103 DNA DNA 8 117 -49 22 70 0 0 chrX 29278369 29278412 -133321518 + AT_rich Low_complexity Low_complexity 1 43 0 3777 159 21 5 chrX 29280380 29281560 -133318370 + L1MA2 LINE L1 4585 5782 -523 * 5794 46 0 0 chrX 29281541 29282245 -133317685 - L1P LINE L1 -1890 4256 3553 6586 32 0 0 chrX 29282245 29283030 -133316900 + L1PA3 LINE L1 5367 6153 -2 3077 128 31 4 chrX 29283030 29283549 -133316381 + L1MA2 LINE L1 5769 6304 0 386 262 86 27 chrX 29284023 29284210 -133315720 - L1MB8 LINE L1 -16 6162 5965 207 305 12 49 chrX 29284582 29284664 -133315266 + L2 LINE L2 3158 3236 -36 327 87 0 0 chrX 29285031 29285077 -133314853 + MADE1 DNA Mariner 1 46 -34 184 299 45 15 chrX 29286827 29286894 -133313036 + MER5B DNA MER1_type 7 75 -103 9068 39 0 0 chrX 29287308 29288410 -133311520 - L1P LINE L1 -1362 4784 3683 7466 25 9 0 chrX 29288410 29289818 -133310112 + L1PA4 LINE L1 4739 6154 -1 519 101 0 0 chrX 29290553 29290632 -133309298 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 551 116 9 62 chrX 29291583 29291695 -133308235 + L1MA4A LINE L1 6190 6295 -8 258 176 0 40 chrX 29291788 29291862 -133308068 + L1MA4 LINE L1 6229 6299 -1 2207 104 7 0 chrX 29292818 29293116 -133306814 - AluSg SINE Alu -10 300 1 421 299 104 94 chrX 29294791 29295395 -133304535 + L2 LINE L2 2186 2801 -513 2162 112 0 19 chrX 29295395 29295708 -133304222 - AluSx SINE Alu -5 307 1 421 299 104 94 chrX 29295708 29295881 -133304049 + L2 LINE L2 2801 2971 -343 486 217 43 0 chrX 29296012 29296127 -133303803 - L1MA8 LINE L1 -2 6289 6170 205 309 10 41 chrX 29296181 29296278 -133303652 + L2 LINE L2 3175 3268 -45 207 0 0 0 chrX 29299510 29299533 -133300397 + (CA)n Simple_repeat Simple_repeat 2 24 0 1875 91 0 0 chrX 29300447 29300689 -133299241 + AluY SINE Alu 69 310 -1 225 266 106 32 chrX 29303932 29304026 -133295904 + MER5A DNA MER1_type 16 116 -73 201 237 0 0 chrX 29305138 29305197 -133294733 + (TA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chrX 29305522 29305544 -133294386 + AT_rich Low_complexity Low_complexity 1 22 0 782 239 24 0 chrX 29306235 29306402 -133293528 + MER45A DNA AcHobo 8 178 0 5159 159 38 11 chrX 29307379 29308798 -133291132 + L1PA15 LINE L1 4696 6149 -16 902 283 52 15 chrX 29308845 29309170 -133290760 - L2 LINE L2 -825 2489 2153 619 310 129 34 chrX 29309191 29309979 -133289951 - L1MDa LINE L1 -2369 3760 2862 462 319 132 6 chrX 29310189 29310304 -133289626 - L1MDa LINE L1 -3585 2544 2445 1964 136 10 0 chrX 29310304 29310599 -133289331 - AluSx SINE Alu -14 298 1 462 319 132 6 chrX 29310599 29310825 -133289105 - L1MDa LINE L1 -3684 2445 2160 1416 131 86 96 chrX 29310870 29311201 -133288729 - AluSq SINE Alu 0 328 1 479 291 90 19 chrX 29311655 29312088 -133287842 - L1MDa LINE L1 -4535 1594 1131 4689 197 12 21 chrX 29312098 29313138 -133286792 - L1MA10 LINE L1 -30 6304 5274 379 307 43 64 chrX 29313314 29313734 -133286196 - L1MDa LINE L1 -5180 939 529 250 255 0 113 chrX 29315050 29315083 -133284847 + MIR SINE MIR 132 167 -95 2226 114 0 0 chrX 29315083 29315391 -133284539 + AluSx SINE Alu 1 308 -4 250 255 0 113 chrX 29315391 29315463 -133284467 + MIR SINE MIR 167 225 -37 899 120 0 0 chrX 29315994 29316127 -133283803 + AluSg/x SINE Alu 180 312 0 372 163 0 0 chrX 29316899 29316985 -133282945 + (TA)n Simple_repeat Simple_repeat 2 87 0 240 261 274 45 chrX 29317088 29317245 -133282685 - MIR SINE MIR -13 249 57 474 204 217 0 chrX 29317245 29317397 -133282533 + LTR41 LTR ERVL 3 187 -586 418 197 0 71 chrX 29317919 29318046 -133281884 + LTR41 LTR ERVL 650 767 -6 1520 167 4 7 chrX 29318385 29318654 -133281276 + AluJb SINE Alu 29 296 -16 205 254 28 28 chrX 29319730 29319801 -133280129 + MIR SINE MIR 158 228 -34 518 411 21 7 chrX 29321634 29321916 -133278014 - L3 LINE CR1 -374 1203 918 238 267 93 23 chrX 29322002 29322088 -133277842 + MIR3 SINE MIR 108 199 -9 375 281 119 32 chrX 29323374 29323719 -133276211 - L1ME4a LINE L1 -174 5947 5573 832 301 81 17 chrX 29323743 29324561 -133275369 + L1ME2 LINE L1 5016 5883 -281 279 278 29 54 chrX 29327639 29327844 -133272086 + L1MEc LINE L1 984 1183 -4936 397 327 149 33 chrX 29327948 29328552 -133271378 + L1MEc LINE L1 1320 1991 -826 198 378 0 0 chrX 29328995 29329069 -133270861 + L2 LINE L2 3195 3268 -4 643 315 50 5 chrX 29329867 29330086 -133269844 - MIR SINE MIR -25 237 9 2202 222 52 16 chrX 29330851 29331405 -133268525 + MER90 LTR ERV1 2 575 0 923 296 68 38 chrX 29331465 29331938 -133267992 - LTR16C LTR ERVL -4 487 1 321 306 16 75 chrX 29332177 29332363 -133267567 - MIR SINE MIR -4 258 84 688 239 0 25 chrX 29332790 29332990 -133266940 + MER5A DNA MER1_type 3 189 0 22 0 0 0 chrX 29333081 29333103 -133266827 + AT_rich Low_complexity Low_complexity 1 22 0 943 41 0 86 chrX 29333964 29334212 -133265718 + (GGAAA)n Simple_repeat Simple_repeat 1 226 0 406 303 0 42 chrX 29334241 29334382 -133265548 + MIR3 SINE MIR 57 193 -15 483 305 64 84 chrX 29334603 29334996 -133264934 + L2 LINE L2 2925 3309 -4 242 157 0 0 chrX 29335073 29335124 -133264806 - L1MA4A LINE L1 -7 6296 6246 21 0 0 0 chrX 29335232 29335253 -133264677 + AT_rich Low_complexity Low_complexity 1 21 0 419 351 90 5 chrX 29335276 29335487 -133264443 - MIR SINE MIR 0 262 34 25 0 0 0 chrX 29336204 29336229 -133263701 + AT_rich Low_complexity Low_complexity 1 25 0 244 241 0 0 chrX 29336289 29336347 -133263583 + T-rich Low_complexity Low_complexity 1 58 0 336 294 147 42 chrX 29336947 29337512 -133262418 + L1MC4a LINE L1 5276 5899 -1909 483 18 0 0 chrX 29338266 29338322 -133261608 + (TG)n Simple_repeat Simple_repeat 1 56 0 2196 273 150 39 chrX 29338336 29339445 -133260485 - L2 LINE L2 -752 2562 1331 622 360 29 0 chrX 29339669 29339911 -133260019 - MIR SINE MIR -5 257 9 3368 166 31 23 chrX 29339938 29340634 -133259296 - L1MA10 LINE L1 -403 5909 5207 1871 174 27 37 chrX 29340635 29341042 -133258888 + L1MA10 LINE L1 5932 6334 0 591 176 0 0 chrX 29341557 29341659 -133258271 - L1MA9 LINE L1 -884 5262 5161 1520 154 25 3 chrX 29341735 29342020 -133257910 + L1M2 LINE L1 5314 5604 -693 359 308 179 48 chrX 29342057 29342637 -133257293 + L2 LINE L2 2599 3239 -74 21 36 0 0 chrX 29343481 29343509 -133256421 + AT_rich Low_complexity Low_complexity 1 28 0 1318 184 132 16 chrX 29343793 29344097 -133255833 - MER44D DNA MER2_type 0 609 1 1737 174 0 13 chrX 29344361 29344666 -133255264 + AluJo SINE Alu 1 301 -11 900 209 0 68 chrX 29345976 29346211 -133253719 - MER20 DNA MER1_type 0 219 1 23 33 0 0 chrX 29347128 29347158 -133252772 + AT_rich Low_complexity Low_complexity 1 30 0 2188 118 0 3 chrX 29347263 29347569 -133252361 - AluSc SINE Alu -2 307 3 1847 199 40 86 chrX 29348135 29348658 -133251272 + MLT1D LTR MaLR 7 505 0 193 279 0 0 chrX 29348667 29348710 -133251220 + L2 LINE L2 3183 3225 -88 240 181 64 21 chrX 29349211 29349305 -133250625 + (TA)n Simple_repeat Simple_repeat 1 98 0 253 218 115 0 chrX 29349312 29349390 -133250540 - L1MC4 LINE L1 -1342 6700 6614 890 236 10 10 chrX 29349391 29349590 -133250340 + MLT1D LTR MaLR 307 505 0 21 0 0 0 chrX 29350918 29350939 -133248991 + AT_rich Low_complexity Low_complexity 1 21 0 227 161 0 36 chrX 29351379 29351435 -133248495 - L1ME LINE L1 -260 5861 5808 251 191 16 16 chrX 29351511 29351574 -133248356 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 27 29 0 0 chrX 29352022 29352056 -133247874 + AT_rich Low_complexity Low_complexity 1 34 0 2149 104 3 7 chrX 29352682 29352979 -133246951 + AluSq SINE Alu 1 296 -17 1705 198 27 0 chrX 29353144 29353478 -133246452 - MER2 DNA MER2_type -1 343 1 185 322 107 33 chrX 29354156 29354277 -133245653 - MIR SINE MIR -25 237 108 267 262 19 16 chrX 29354280 29354391 -133245539 - MIR SINE MIR -78 130 19 183 80 0 0 chrX 29354735 29354760 -133245170 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 229 291 69 11 chrX 29354872 29355047 -133244883 + L1MEc LINE L1 1017 1201 -5195 5825 165 18 14 chrX 29355523 29355884 -133244046 - L1PB1 LINE L1 -1 6150 5792 300 91 0 0 chrX 29355884 29355928 -133244002 + (CA)n Simple_repeat Simple_repeat 2 45 0 5825 165 18 14 chrX 29355928 29357625 -133242305 - L1PB1 LINE L1 -359 5792 4093 203 305 0 0 chrX 29359164 29359223 -133240707 + GA-rich Low_complexity Low_complexity 3 61 0 528 248 43 7 chrX 29359510 29359651 -133240279 + MER33 DNA MER1_type 1 146 -178 397 150 110 20 chrX 29359684 29359784 -133240146 + MER33 DNA MER1_type 215 323 -1 2411 180 17 19 chrX 29360833 29361350 -133238580 - L1MA7 LINE L1 0 6291 5776 602 190 30 10 chrX 29361410 29361566 -133238364 - L1MC/D LINE L1 -545 5789 5693 * 1850 143 21 13 chrX 29361565 29362043 -133237887 + L1M2 LINE L1 5110 5591 -700 255 61 0 0 chrX 29362062 29362095 -133237835 + (TG)n Simple_repeat Simple_repeat 2 34 0 375 315 34 0 chrX 29362096 29362294 -133237636 + (TATG)n Simple_repeat Simple_repeat 1 204 0 230 275 22 22 chrX 29362302 29362393 -133237537 - L1MC4 LINE L1 -1338 6704 6614 47 19 0 0 chrX 29362640 29362694 -133237236 + AT_rich Low_complexity Low_complexity 1 54 0 328 369 131 24 chrX 29362956 29363593 -133236337 + L2 LINE L2 2552 3264 -8 1734 184 4 1 chrX 29363990 29364329 -133235601 - L1MB8 LINE L1 -173 6005 5667 207 0 0 0 chrX 29365508 29365531 -133234399 + (A)n Simple_repeat Simple_repeat 1 23 0 191 243 20 7 chrX 29367217 29367365 -133232565 + (TA)n Simple_repeat Simple_repeat 1 150 0 2177 108 13 3 chrX 29367422 29367728 -133232202 - AluSq SINE Alu -4 309 1 463 216 0 10 chrX 29367756 29367853 -133232077 - MER94 DNA DNA -34 100 5 835 199 74 61 chrX 29367862 29368159 -133231771 + MER33 DNA MER1_type 21 321 -3 5934 30 1 0 chrX 29368159 29368884 -133231046 + L1P LINE L1 4612 5337 -809 213 347 50 33 chrX 29370603 29370724 -133229206 + L2 LINE L2 2942 3064 -249 911 213 72 61 chrX 29370903 29371348 -133228582 + MLT1B LTR MaLR 1 390 0 265 160 20 0 chrX 29371651 29371701 -133228229 + L1PA14 LINE L1 5860 5910 -251 295 186 157 0 chrX 29372108 29372178 -133227752 + LTR33 LTR ERVL 9 89 -432 29 60 0 0 chrX 29373444 29373494 -133226436 + AT_rich Low_complexity Low_complexity 1 50 0 2239 64 4 0 chrX 29373745 29374026 -133225904 + AluY SINE Alu 1 282 -29 620 317 53 28 chrX 29376101 29376344 -133223586 + MIR SINE MIR 3 254 -8 634 171 0 0 chrX 29376572 29376683 -133223247 + FRAM SINE Alu 57 167 -9 23 33 0 0 chrX 29377388 29377418 -133222512 + AT_rich Low_complexity Low_complexity 1 30 0 25 90 0 0 chrX 29379632 29379699 -133220231 + AT_rich Low_complexity Low_complexity 1 67 0 205 255 20 0 chrX 29381954 29382005 -133217925 - L2 LINE L2 -10 3303 3252 742 207 9 68 chrX 29384545 29384767 -133215163 + MER3 DNA MER1_type 1 209 0 1287 198 0 30 chrX 29384807 29385075 -133214855 + AluJo SINE Alu 21 280 -32 2118 86 33 43 chrX 29385240 29385544 -133214386 - AluSg SINE Alu -9 301 1 1068 239 19 0 chrX 29385586 29385849 -133214081 + L1MC1 LINE L1 4706 4973 -1173 2275 104 0 10 chrX 29386029 29386337 -133213593 + AluSx SINE Alu 1 305 -7 905 155 140 10 chrX 29386393 29386593 -133213337 + L1PA16 LINE L1 5941 6166 0 5835 179 23 22 chrX 29386693 29388047 -133211883 + L1MC1 LINE L1 4981 6331 -2 403 125 28 14 chrX 29389297 29389369 -133210561 - MIR SINE MIR -84 178 106 271 348 36 22 chrX 29389507 29389645 -133210285 - MIR3 SINE MIR -65 143 4 326 285 72 102 chrX 29389844 29390149 -133209781 + L3 LINE CR1 944 1239 -338 355 291 71 8 chrX 29390195 29390322 -133209608 + MIR SINE MIR 57 191 -71 2457 73 0 0 chrX 29390497 29390797 -133209133 - AluY SINE Alu -11 300 1 21 0 0 0 chrX 29390875 29390896 -133209034 + AT_rich Low_complexity Low_complexity 1 21 0 745 289 50 15 chrX 29391262 29391522 -133208408 + L2 LINE L2 1870 2138 -1176 945 303 150 16 chrX 29391523 29392287 -133207643 + L2 LINE L2 2421 3292 -21 223 235 0 20 chrX 29392664 29392715 -133207215 + (TA)n Simple_repeat Simple_repeat 1 50 0 202 350 0 0 chrX 29392867 29392927 -133207003 + L2 LINE L2 1842 1901 -1413 2363 77 3 7 chrX 29392929 29393239 -133206691 + AluSc SINE Alu 1 309 0 618 358 157 28 chrX 29394328 29394373 -133205557 - L2 LINE L2 -517 2797 2759 2304 242 26 8 chrX 29394373 29394976 -133204954 - MER90 LTR ERV1 0 614 1 618 358 157 28 chrX 29394976 29395690 -133204240 - L2 LINE L2 -555 2759 1940 2515 21 7 0 chrX 29396148 29396433 -133203497 + AluY SINE Alu 2 288 -23 373 266 288 14 chrX 29397398 29397537 -133202393 - MER5A DNA MER1_type -3 186 10 225 94 0 0 chrX 29399316 29399348 -133200582 + (CTATT)n Simple_repeat Simple_repeat 2 33 0 471 325 43 43 chrX 29400016 29400250 -133199680 - L3 LINE CR1 -31 1546 1313 567 275 78 32 chrX 29400298 29400655 -133199275 + MLT1H1 LTR MaLR 152 546 -9 243 0 0 0 chrX 29400685 29400712 -133199218 + (T)n Simple_repeat Simple_repeat 1 27 0 1072 152 152 62 chrX 29400775 29401065 -133198865 + L1MA8 LINE L1 5718 6033 -258 338 313 31 82 chrX 29401213 29401504 -133198426 - L3 LINE CR1 -527 1050 775 186 323 43 11 chrX 29401566 29401659 -133198271 - MIR SINE MIR -74 188 93 184 316 86 8 chrX 29401819 29401936 -133197994 - L3 LINE CR1 -820 757 632 1118 292 60 22 chrX 29402126 29402492 -133197438 + LTR16C LTR ERVL 112 491 0 180 0 0 0 chrX 29402532 29402552 -133197378 + (T)n Simple_repeat Simple_repeat 1 20 0 274 380 64 12 chrX 29402592 29402842 -133197088 + L2 LINE L2 1333 1595 -1719 991 118 0 0 chrX 29402864 29403000 -133196930 - AluSc SINE Alu -18 291 156 999 346 77 32 chrX 29403000 29403470 -133196460 + L2 LINE L2 1969 2416 -898 1733 192 40 0 chrX 29403470 29403819 -133196111 + MLT1A1 LTR MaLR 2 364 -1 999 346 77 32 chrX 29403819 29404047 -133195883 + L2 LINE L2 2416 2632 -682 732 202 40 0 chrX 29404047 29404220 -133195710 - L1MA4 LINE L1 -4 6296 6117 999 346 77 32 chrX 29404220 29404363 -133195567 + L2 LINE L2 2632 2849 -465 3746 146 58 7 chrX 29404834 29405507 -133194423 + MER39 LTR ERV1 1 707 0 2585 30 0 7 chrX 29405620 29405921 -133194009 - AluY SINE Alu -12 299 1 222 200 67 0 chrX 29406021 29406066 -133193864 - L2 LINE L2 -9 3263 3216 2235 114 0 0 chrX 29409714 29410012 -133189918 + AluSx SINE Alu 1 298 -14 2773 126 66 72 chrX 29410185 29410595 -133189335 + MER4B LTR ERV1 1 409 -201 2337 82 0 19 chrX 29410595 29410910 -133189020 - AluY SINE Alu 0 311 3 2773 126 66 72 chrX 29410910 29411072 -133188858 + MER4B LTR ERV1 409 570 -40 1024 109 34 0 chrX 29411074 29411221 -133188709 - AluSg/x SINE Alu 0 312 161 381 125 0 0 chrX 29411221 29411277 -133188653 + MER4A LTR ERV1 609 664 0 550 345 15 15 chrX 29414135 29414341 -133185589 + MIR SINE MIR 30 235 -27 981 257 0 0 chrX 29414581 29414787 -133185143 + MER58A DNA MER1_type 3 208 -16 1631 221 11 32 chrX 29415772 29415932 -133183998 - MLT1A2 LTR MaLR -2 372 210 1824 172 92 25 chrX 29415932 29416333 -133183597 + MSTA LTR MaLR 1 428 0 1631 221 11 32 chrX 29416333 29416548 -133183382 - MLT1A2 LTR MaLR -164 210 5 194 371 56 0 chrX 29416842 29416931 -133182999 - MIR SINE MIR -65 143 50 1034 268 70 68 chrX 29416945 29417456 -133182474 + LTR33A LTR ERVL 1 512 -11 221 333 90 94 chrX 29417484 29417672 -133182258 - L2 LINE L2 -7 3265 3078 2141 122 0 0 chrX 29417672 29417976 -133181954 + AluSc SINE Alu 1 304 -5 221 333 90 94 chrX 29417976 29418189 -133181741 - L2 LINE L2 -194 3078 2866 221 167 0 24 chrX 29418383 29418425 -133181505 - MER5C DNA MER1_type -248 76 36 584 346 135 24 chrX 29418534 29419320 -133180610 - L2 LINE L2 -571 2743 1871 2355 122 58 23 chrX 29419845 29420278 -133179652 + LTR7 LTR ERV1 1 448 -2 595 205 0 10 chrX 29420354 29420500 -133179430 + MER5A DNA MER1_type 4 189 0 609 237 69 0 chrX 29420518 29420691 -133179239 - MER5A DNA MER1_type -4 185 1 210 171 98 0 chrX 29421020 29421061 -133178869 + MIR SINE MIR 95 139 -123 180 268 36 18 chrX 29422294 29422350 -133177580 - L2 LINE L2 0 3272 3216 183 162 0 0 chrX 29422936 29422973 -133176957 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 343 256 178 91 chrX 29423079 29423245 -133176685 - MIR SINE MIR -6 256 63 1604 150 0 4 chrX 29423245 29423511 -133176419 + L1PA15 LINE L1 5901 6165 0 343 256 178 91 chrX 29423511 29423574 -133176356 - MIR SINE MIR -199 63 7 2169 98 0 14 chrX 29423836 29424131 -133175799 + AluSg1 SINE Alu 1 291 -18 452 261 39 8 chrX 29424516 29424646 -133175284 + MER94 DNA DNA 1 134 0 246 345 26 26 chrX 29424753 29424869 -133175061 + MIR SINE MIR 147 262 0 1657 204 24 3 chrX 29425482 29425816 -133174114 - MER58B DNA MER1_type 0 341 1 205 161 0 0 chrX 29426528 29426559 -133173371 + polypurine Low_complexity Low_complexity 2 32 0 23 54 0 0 chrX 29427472 29427509 -133172421 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chrX 29428737 29428770 -133171160 + AT_rich Low_complexity Low_complexity 1 33 0 239 373 34 52 chrX 29429439 29429707 -133170223 - L3 LINE CR1 -124 1453 1191 182 359 67 26 chrX 29430623 29430818 -133169112 - L3 LINE CR1 -1034 543 341 326 315 30 80 chrX 29430842 29431012 -133168918 + MIR SINE MIR 13 173 -89 777 221 35 0 chrX 29431012 29431184 -133168746 + MER45A DNA AcHobo 1 178 0 326 315 30 80 chrX 29431184 29431213 -133168717 + MIR SINE MIR 173 202 -60 1498 155 74 0 chrX 29431654 29431912 -133168018 - MER7A DNA MER2_type -1 335 59 8719 219 19 11 chrX 29431913 29434071 -133165859 + L1PA15 LINE L1 2730 4904 -1242 5382 127 20 6 chrX 29434072 29435263 -133164667 + L1PA15 LINE L1 4953 6157 -8 477 219 1 0 chrX 29435251 29435347 -133164583 - MER7A DNA MER2_type -251 95 1 835 133 173 6 chrX 29435415 29435588 -133164342 + MSTA LTR MaLR 1 202 -226 640 238 47 6 chrX 29435591 29435763 -133164167 + L1P4 LINE L1 753 931 -6650 * 6732 167 42 8 chrX 29435760 29436487 -133163443 + L1P4 LINE L1 4363 5063 -2521 243 0 0 0 chrX 29436487 29436514 -133163416 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 1054 109 6 11 chrX 29436520 29436694 -133163236 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 6732 167 42 8 chrX 29436694 29437252 -133162678 + L1P4 LINE L1 5067 5700 -1884 3823 117 19 1 chrX 29437254 29438308 -133161622 + L1P4 LINE L1 6167 7243 -369 462 218 0 0 chrX 29438313 29438400 -133161530 + MSTA LTR MaLR 340 426 -2 296 171 57 34 chrX 29438743 29438831 -133161099 - MIR SINE MIR -44 218 129 242 162 40 14 chrX 29439584 29439666 -133160264 + (TTAA)n Simple_repeat Simple_repeat 1 84 0 2333 109 0 6 chrX 29440626 29440938 -133158992 - AluSx SINE Alu 0 312 3 22 35 0 0 chrX 29441076 29441105 -133158825 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 29441874 29441897 -133158033 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chrX 29442086 29442119 -133157811 + AT_rich Low_complexity Low_complexity 1 33 0 4789 106 25 0 chrX 29442138 29442830 -133157100 - L1PA10 LINE L1 -16 6152 5444 2891 207 16 65 chrX 29442847 29443698 -133156232 + L1PA12 LINE L1 2585 3394 -4190 2251 111 0 10 chrX 29444746 29445052 -133154878 + AluY SINE Alu 1 303 -8 1212 148 5 0 chrX 29445545 29445748 -133154182 - L1PA14 LINE L1 0 6161 5958 411 338 15 8 chrX 29445769 29445902 -133154028 + MER5A DNA MER1_type 55 188 -1 22 0 0 0 chrX 29446767 29446789 -133153141 + AT_rich Low_complexity Low_complexity 1 22 0 323 319 188 0 chrX 29446945 29447083 -133152847 + MIR3 SINE MIR 36 199 -9 220 279 148 16 chrX 29447793 29447915 -133152015 + L3 LINE CR1 1216 1353 -224 2017 134 7 3 chrX 29449086 29449384 -133150546 - AluSx SINE Alu -13 299 1 2057 118 3 0 chrX 29449923 29450210 -133149720 + AluSg SINE Alu 9 296 -14 914 216 22 0 chrX 29451113 29451298 -133148632 - MER5A DNA MER1_type 0 189 1 541 298 37 0 chrX 29452641 29452802 -133147128 + MLT1G1 LTR MaLR 3 169 -426 207 365 143 33 chrX 29453046 29453564 -133146366 + L2 LINE L2 1955 2529 -785 21 0 0 0 chrX 29454238 29454259 -133145671 + AT_rich Low_complexity Low_complexity 1 21 0 2434 157 17 20 chrX 29454409 29454816 -133145114 + MSTB LTR MaLR 1 406 -20 2168 117 0 3 chrX 29456587 29456885 -133143045 - AluSq SINE Alu -16 297 1 528 209 0 11 chrX 29457826 29457917 -133142013 - Tigger7 DNA MER2_type -1 2486 2397 2881 173 29 4 chrX 29457919 29458411 -133141519 - Tigger7 DNA MER2_type -214 519 16 270 0 0 0 chrX 29458411 29458441 -133141489 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 1611 193 17 64 chrX 29458672 29459081 -133140849 + MLT1B LTR MaLR 1 390 0 283 370 70 33 chrX 29459268 29459538 -133140392 - L3b LINE CR1 -8 1575 1296 442 175 70 44 chrX 29461054 29461168 -133138762 - MIR SINE MIR -124 138 22 430 306 35 46 chrX 29462073 29462246 -133137684 + MIR SINE MIR 41 211 -51 2003 135 3 0 chrX 29462515 29462811 -133137119 - AluSx SINE Alu -13 299 3 400 322 75 23 chrX 29462981 29463195 -133136735 - Charlie8 DNA MER1_type -2154 263 39 26 30 0 0 chrX 29463334 29463367 -133136563 + AT_rich Low_complexity Low_complexity 1 33 0 1339 295 72 46 chrX 29463397 29464400 -133135530 + L1ME3A LINE L1 3636 4611 -1535 2252 193 64 6 chrX 29464400 29464886 -133135044 + MER67D LTR ERV1 1 514 0 1339 295 72 46 chrX 29464886 29464901 -133135029 + L1ME3A LINE L1 4611 4624 -1522 2026 126 0 10 chrX 29464901 29465194 -133134736 + AluSq SINE Alu 1 290 -23 1339 295 72 46 chrX 29465194 29465383 -133134547 + L1ME3A LINE L1 4624 4902 -1244 1786 271 66 26 chrX 29465750 29466613 -133133317 + L1ME3A LINE L1 5258 6164 -6 1986 108 59 15 chrX 29466642 29467046 -133132884 + L1MA4A LINE L1 5749 6295 -8 2520 61 3 0 chrX 29467107 29467417 -133132513 + AluY SINE Alu 1 311 0 603 257 17 0 chrX 29467662 29467837 -133132093 - MER3 DNA MER1_type 0 2411 2234 419 243 0 18 chrX 29467847 29467958 -133131972 - MER3 DNA MER1_type -61 148 40 235 263 20 10 chrX 29468126 29468225 -133131705 + (TA)n Simple_repeat Simple_repeat 2 101 0 299 341 82 2 chrX 29468407 29468531 -133131399 + MIR SINE MIR 20 153 -55 23 33 0 0 chrX 29468560 29468590 -133131340 + AT_rich Low_complexity Low_complexity 1 30 0 442 313 44 19 chrX 29469317 29469477 -133130453 - L3 LINE CR1 -23 1554 1391 624 294 77 17 chrX 29469493 29469728 -133130202 - MIR SINE MIR 0 262 14 253 347 128 30 chrX 29470266 29470736 -133129194 - L2 LINE L2 -557 2757 2242 269 321 174 11 chrX 29470889 29471073 -133128857 - L3 LINE CR1 -436 1141 928 315 246 0 0 chrX 29471116 29471242 -133128688 + (TA)n Simple_repeat Simple_repeat 1 126 0 1935 197 20 101 chrX 29472044 29472613 -133127317 + MLT2B3 LTR ERVL 1 520 -34 228 67 0 0 chrX 29472613 29472643 -133127287 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 1935 197 20 101 chrX 29472643 29472676 -133127254 + MLT2B3 LTR ERVL 520 554 0 673 174 0 9 chrX 29472737 29472846 -133127084 - FLAM_C SINE Alu -35 108 1 8418 166 103 22 chrX 29473279 29474902 -133125028 + MER52A LTR ERV1 1 1755 0 227 320 27 13 chrX 29475309 29475384 -133124546 + L2 LINE L2 3229 3304 -9 22 56 0 0 chrX 29475462 29475498 -133124432 + AT_rich Low_complexity Low_complexity 1 36 0 471 305 224 30 chrX 29477817 29478224 -133121706 + L2 LINE L2 1564 2071 -1243 2146 126 0 7 chrX 29478224 29478534 -133121396 - AluSx SINE Alu -4 308 1 471 305 224 30 chrX 29478534 29478585 -133121345 + L2 LINE L2 2071 2111 -1203 526 313 212 14 chrX 29478585 29479095 -133120835 + L2 LINE L2 2707 3310 -3 203 161 0 0 chrX 29481407 29481438 -133118492 + (CATA)n Simple_repeat Simple_repeat 3 33 0 375 60 0 0 chrX 29482262 29482312 -133117618 + (CA)n Simple_repeat Simple_repeat 1 50 0 501 370 45 0 chrX 29483324 29483567 -133116363 + MIR SINE MIR 1 254 -8 195 306 57 16 chrX 29484572 29484696 -133115234 + MIR SINE MIR 26 154 -108 9001 193 28 50 chrX 29484707 29487257 -133112673 + L1MA5A LINE L1 2642 5247 -1050 191 61 30 0 chrX 29487257 29487290 -133112640 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9001 193 28 50 chrX 29487290 29487590 -133112340 + L1MA5A LINE L1 5247 5552 -745 2815 117 36 11 chrX 29487590 29488059 -133111871 - L1MA2 LINE L1 -8 6296 5816 9001 193 28 50 chrX 29488059 29488712 -133111218 + L1MA5A LINE L1 5552 6025 -272 1994 185 3 3 chrX 29488463 29488825 -133111105 + L1PB4 LINE L1 5782 6143 -13 * 27 0 0 0 chrX 29489879 29489906 -133110024 + AT_rich Low_complexity Low_complexity 1 27 0 189 314 0 0 chrX 29490384 29490435 -133109495 - L2 LINE L2 -3 3269 3219 201 121 0 0 chrX 29491223 29491256 -133108674 + (GAATG)n Simple_repeat Simple_repeat 1 33 0 267 308 85 15 chrX 29491260 29491390 -133108540 - L3b LINE CR1 -66 1517 1379 22 0 0 0 chrX 29492881 29492903 -133107027 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 29493164 29493185 -133106745 + AT_rich Low_complexity Low_complexity 1 21 0 297 371 45 0 chrX 29493548 29493680 -133106250 - MIR3 SINE MIR -27 181 44 654 310 52 15 chrX 29493694 29494051 -133105879 - LTR16C LTR ERVL 0 491 84 1096 104 121 0 chrX 29494074 29494247 -133105683 - MER30 DNA MER1_type -36 194 1 629 167 218 6 chrX 29494791 29494947 -133104983 - MER53 DNA DNA 0 189 1 746 240 102 41 chrX 29495501 29495828 -133104102 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chrX 29495852 29495873 -133104057 + AT_rich Low_complexity Low_complexity 1 21 0 728 289 88 34 chrX 29496469 29496930 -133103000 + MLT1H LTR MaLR 1 537 -12 4125 195 83 50 chrX 29497393 29498598 -133101332 - L1MC2 LINE L1 -11 7754 6161 450 248 10 0 chrX 29498673 29498774 -133101156 + ERVL LTR ERVL 4928 5029 -735 2696 186 26 17 chrX 29499017 29499718 -133100212 + L1MA8 LINE L1 4750 5453 -743 4149 116 20 2 chrX 29499718 29500355 -133099575 + L1PA13 LINE L1 5508 6156 -7 315 188 25 25 chrX 29500397 29500477 -133099453 + L1MA8 LINE L1 5439 5518 -816 3578 169 38 20 chrX 29500520 29501278 -133098652 + L1MA8 LINE L1 5514 6285 -6 794 292 116 32 chrX 29501378 29501816 -133098114 - LTR33 LTR ERVL -18 503 29 196 344 78 47 chrX 29502616 29502744 -133097186 - L2 LINE L2 -4 3268 3137 784 154 0 22 chrX 29503176 29503312 -133096618 - FLAM_C SINE Alu 0 133 1 746 172 14 115 chrX 29503482 29503691 -133096239 + MER5A DNA MER1_type 2 189 0 231 212 0 197 chrX 29504327 29504459 -133095471 + MER102b DNA MER1_type 236 341 0 381 255 57 9 chrX 29504500 29504606 -133095324 - MER5A DNA MER1_type -69 120 10 1882 151 7 3 chrX 29505216 29505514 -133094416 - AluJo SINE Alu -13 299 1 588 238 152 0 chrX 29506221 29506385 -133093545 - MER5A DNA MER1_type 0 189 1 2159 117 3 0 chrX 29506579 29506878 -133093052 + AluSg SINE Alu 1 300 -10 655 226 38 52 chrX 29506903 29507115 -133092815 + MER3 DNA MER1_type 1 209 0 2082 121 13 7 chrX 29507876 29508181 -133091749 + AluSx SINE Alu 1 307 -5 1079 78 20 0 chrX 29508358 29508511 -133091419 + L1PA6 LINE L1 5999 6154 0 590 253 19 26 chrX 29508669 29508823 -133091107 + MER5B DNA MER1_type 26 178 0 21 0 0 0 chrX 29508831 29508852 -133091078 + GC_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chrX 29509125 29509160 -133090770 + AT_rich Low_complexity Low_complexity 1 35 0 306 293 153 7 chrX 29509193 29509343 -133090587 - MIR SINE MIR -89 173 2 21 0 0 0 chrX 29509408 29509429 -133090501 + AT_rich Low_complexity Low_complexity 1 21 0 2733 119 12 64 chrX 29509588 29510107 -133089823 - L1MA3 LINE L1 -1 6304 5813 10819 177 58 14 chrX 29510107 29513165 -133086765 - L1 LINE L1 -2899 4666 1470 2441 168 24 2 chrX 29513165 29513581 -133086349 - MSTA LTR MaLR 0 428 4 8483 174 38 24 chrX 29513590 29514751 -133085179 - MSTA-int LTR MaLR -7 1644 453 478 82 0 0 chrX 29514751 29514824 -133085106 + L1PA8 LINE L1 6096 6168 -4 8483 174 38 24 chrX 29514824 29515284 -133084646 - MSTA-int LTR MaLR -1198 453 1 2515 144 51 7 chrX 29515284 29515694 -133084236 - MSTA LTR MaLR 0 428 1 8472 177 25 3 chrX 29515696 29517122 -133082808 - L1 LINE L1 -6093 1472 16 2251 90 6 16 chrX 29518399 29518711 -133081219 + AluY SINE Alu 1 309 -2 341 206 0 0 chrX 29518952 29519015 -133080915 + L2 LINE L2 3251 3313 0 610 102 10 20 chrX 29519137 29519235 -133080695 - THE1C-int LTR MaLR -1483 97 1 2426 89 77 3 chrX 29519235 29519584 -133080346 - THE1C LTR MaLR 0 375 1 551 199 177 14 chrX 29520110 29520251 -133079679 - MER5A DNA MER1_type 0 189 26 650 198 0 24 chrX 29521605 29521731 -133078199 + FLAM_C SINE Alu 1 123 -20 52 50 0 0 chrX 29521731 29521811 -133078119 + AT_rich Low_complexity Low_complexity 1 80 0 580 324 121 41 chrX 29522379 29523065 -133076865 + L2 LINE L2 2562 3301 -12 284 102 20 0 chrX 29523076 29523125 -133076805 + (TA)n Simple_repeat Simple_repeat 2 51 0 488 138 0 0 chrX 29523165 29523245 -133076685 + MADE1 DNA Mariner 1 80 0 535 280 23 45 chrX 29526180 29526439 -133073491 - LTR16A1 LTR ERVL 0 457 232 2379 234 55 8 chrX 29528769 29529282 -133070648 + MER45B DNA AcHobo 3 539 -501 440 233 113 13 chrX 29529285 29529435 -133070495 + MIR SINE MIR 84 248 -14 331 262 134 12 chrX 29530058 29530230 -133069700 - MER112 DNA MER1_type -1 259 67 2322 64 3 22 chrX 29530960 29531271 -133068659 + AluY SINE Alu 1 305 -6 23 0 0 0 chrX 29531462 29531485 -133068445 + AT_rich Low_complexity Low_complexity 1 23 0 569 245 50 7 chrX 29531490 29531629 -133068301 + MIR SINE MIR 74 218 -44 518 309 118 5 chrX 29532534 29532754 -133067176 - MIR SINE MIR -8 254 10 21 0 0 0 chrX 29532804 29532825 -133067105 + AT_rich Low_complexity Low_complexity 1 21 0 2197 115 0 0 chrX 29532826 29533130 -133066800 - AluSq SINE Alu -9 304 1 719 116 0 0 chrX 29533367 29533479 -133066451 + L1MA1 LINE L1 6191 6302 0 18814 46 11 7 chrX 29533830 29537664 -133062266 - L1PA5 LINE L1 -7 6147 2314 565 278 121 41 chrX 29537704 29538042 -133061888 + MLT1J LTR MaLR 3 367 -144 215 242 15 15 chrX 29538624 29538690 -133061240 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 261 0 0 0 chrX 29538699 29538728 -133061202 + (TG)n Simple_repeat Simple_repeat 2 30 0 759 247 9 55 chrX 29540039 29540258 -133059672 - MER58A DNA MER1_type -15 209 1 1024 238 134 18 chrX 29542133 29542587 -133057343 - Charlie7 DNA MER1_type -622 1990 1484 374 289 56 0 chrX 29542762 29542904 -133057026 - Charlie7 DNA MER1_type -2459 153 4 577 254 94 10 chrX 29542977 29543178 -133056752 - MIR SINE MIR -17 245 28 31 26 0 0 chrX 29543249 29543287 -133056643 + AT_rich Low_complexity Low_complexity 1 38 0 24 77 0 0 chrX 29545083 29545135 -133054795 + AT_rich Low_complexity Low_complexity 1 52 0 1757 298 131 31 chrX 29545272 29545926 -133054004 - L2 LINE L2 -9 3304 2717 2581 43 0 0 chrX 29545926 29546228 -133053702 - AluY SINE Alu -9 302 1 1757 298 131 31 chrX 29546228 29546703 -133053227 - L2 LINE L2 -596 2717 2003 210 343 0 0 chrX 29546743 29546816 -133053114 + MIR SINE MIR 184 256 -6 330 294 48 27 chrX 29547008 29547154 -133052776 + MIR SINE MIR 113 261 -1 215 349 113 9 chrX 29547238 29547344 -133052586 - L2 LINE L2 -35 3237 3121 601 234 0 0 chrX 29547424 29547548 -133052382 + MER110 LTR ERV1 366 489 -2 251 282 90 0 chrX 29547568 29547646 -133052284 - L2 LINE L2 -602 2712 2628 3259 64 7 0 chrX 29547880 29548302 -133051628 - L1PA8 LINE L1 -3 6169 5745 1449 128 13 0 chrX 29548302 29548528 -133051402 + AluSq SINE Alu 69 297 -16 1243 186 22 19 chrX 29548571 29548840 -133051090 + L1MA9 LINE L1 5607 5876 -436 325 218 46 23 chrX 29548965 29549052 -133050878 - L2 LINE L2 -72 3241 3153 2058 108 3 30 chrX 29549545 29549850 -133050080 + AluSx SINE Alu 1 297 -15 228 309 0 0 chrX 29553766 29553821 -133046109 + L2 LINE L2 3210 3264 -8 258 257 22 73 chrX 29554507 29554643 -133045287 + MLT1K LTR MaLR 393 521 -67 279 133 0 0 chrX 29554715 29554760 -133045170 + (TG)n Simple_repeat Simple_repeat 2 46 0 677 336 32 8 chrX 29557329 29557579 -133042351 + MIR SINE MIR 7 262 0 2316 192 32 6 chrX 29559442 29559942 -133039988 + L1MB1 LINE L1 5645 6157 -11 258 250 53 13 chrX 29560068 29560144 -133039786 - MIR SINE MIR -127 135 57 298 121 30 0 chrX 29560172 29560238 -133039692 + (TG)n Simple_repeat Simple_repeat 1 68 0 238 188 60 68 chrX 29560933 29561050 -133038880 + L1 LINE L1 3107 3222 -2924 2392 81 3 0 chrX 29561590 29561899 -133038031 - AluSg SINE Alu 0 310 1 237 83 0 0 chrX 29562480 29562516 -133037414 + (CA)n Simple_repeat Simple_repeat 1 36 0 713 297 146 12 chrX 29563406 29563827 -133036103 - L2 LINE L2 -92 3221 2732 272 283 94 19 chrX 29564072 29564178 -133035752 - L3 LINE CR1 -72 1505 1392 660 358 41 13 chrX 29564377 29564693 -133035237 + MLT1I LTR MaLR 1 325 -84 4696 35 11 0 chrX 29564918 29565486 -133034444 + L1PA4 LINE L1 5580 6153 -2 489 34 0 0 chrX 29565684 29565743 -133034187 + (CA)n Simple_repeat Simple_repeat 2 60 0 202 274 20 0 chrX 29565910 29565961 -133033969 + (CA)n Simple_repeat Simple_repeat 2 53 0 357 312 61 46 chrX 29566207 29566630 -133033300 - L1MC/D LINE L1 -755 5391 5167 2137 112 3 6 chrX 29567963 29568275 -133031655 + AluSq SINE Alu 1 311 -2 22 0 0 0 chrX 29568405 29568427 -133031503 + AT_rich Low_complexity Low_complexity 1 22 0 295 337 79 0 chrX 29568586 29568687 -133031243 + MIR SINE MIR 40 148 -60 950 258 194 30 chrX 29569003 29569507 -133030423 + MLT1G1 LTR MaLR 1 591 -4 28 48 0 0 chrX 29569646 29569688 -133030242 + AT_rich Low_complexity Low_complexity 1 42 0 267 229 43 14 chrX 29570329 29570399 -133029531 - MIR SINE MIR -114 148 77 6683 206 75 22 chrX 29570953 29572761 -133027169 + L1MB1 LINE L1 3338 5242 -904 4583 177 29 9 chrX 29572971 29573860 -133026070 + L1MB1 LINE L1 5260 6166 -2 473 286 60 6 chrX 29574559 29574727 -133025203 - MIR SINE MIR -18 244 68 1209 222 31 6 chrX 29574755 29575056 -133024874 + MLT1D LTR MaLR 214 505 0 1798 161 3 0 chrX 29575142 29575427 -133024503 - AluSx SINE Alu -26 286 1 1412 281 145 9 chrX 29575695 29576219 -133023711 + L2 LINE L2 1912 2506 -808 2187 114 7 0 chrX 29576335 29576642 -133023288 - AluSq SINE Alu -4 309 1 209 313 0 16 chrX 29576729 29576793 -133023137 + L2 LINE L2 3227 3289 -24 203 279 49 49 chrX 29576896 29576957 -133022973 + MIR SINE MIR 22 82 -180 25 0 0 0 chrX 29577119 29577144 -133022786 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chrX 29577440 29577463 -133022467 + AT_rich Low_complexity Low_complexity 1 23 0 231 245 32 32 chrX 29580660 29580754 -133019176 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 2541 149 42 0 chrX 29581919 29582376 -133017554 + L1MA8 LINE L1 5805 6280 -11 545 250 184 0 chrX 29582733 29582885 -133017045 - MER5A DNA MER1_type 0 189 10 884 148 0 0 chrX 29587219 29587354 -133012576 + AluSx SINE Alu 1 135 -177 1343 19 0 0 chrX 29587354 29587513 -133012417 - L1P2 LINE L1 -639 5516 5358 * 4709 29 0 7 chrX 29587511 29588084 -133011846 + L1PA5 LINE L1 5590 6154 0 1072 133 0 61 chrX 29588087 29588283 -133011647 + AluSx SINE Alu 129 312 0 2176 95 0 3 chrX 29588496 29588779 -133011151 + AluSx SINE Alu 1 282 -30 258 324 86 50 chrX 29588830 29588969 -133010961 - L2 LINE L2 -8 3264 3121 343 313 60 8 chrX 29590023 29590157 -133009773 + MIR SINE MIR 20 160 -102 238 245 0 0 chrX 29590284 29590333 -133009597 - L2 LINE L2 0 3313 3265 438 348 191 20 chrX 29591221 29591618 -133008312 + L2 LINE L2 2849 3313 0 189 167 0 0 chrX 29591898 29591928 -133008002 - MIR SINE MIR -166 96 67 203 278 153 0 chrX 29591959 29592031 -133007899 + MIR SINE MIR 47 129 -133 267 232 0 0 chrX 29593434 29593509 -133006421 + (TCCA)n Simple_repeat Simple_repeat 1 75 0 386 355 157 0 chrX 29593571 29593743 -133006187 + MIR SINE MIR 51 249 -13 385 327 0 109 chrX 29593827 29593992 -133005938 - L2 LINE L2 0 3272 3126 324 375 55 10 chrX 29594015 29594215 -133005715 - L1MC/D LINE L1 -2087 5721 5513 381 340 46 34 chrX 29594959 29595197 -133004733 + LTR33 LTR ERVL 42 282 -239 2061 171 3 11 chrX 29595475 29595843 -133004087 - MER47A DNA MER2_type 0 366 2 2545 157 36 0 chrX 29595873 29596312 -133003618 - L1PB4 LINE L1 -14 6142 5688 785 222 54 51 chrX 29596516 29596831 -133003099 - L1MA9 LINE L1 -38 6274 5959 682 165 0 114 chrX 29596840 29596884 -133003046 + L1MA9 LINE L1 5786 5833 -479 2094 120 20 0 chrX 29596884 29597183 -133002747 + AluSc SINE Alu 1 305 -4 682 165 0 114 chrX 29597183 29597194 -133002736 + L1MA9 LINE L1 5833 5844 -468 1768 119 46 56 chrX 29597194 29597497 -133002433 + AluSx SINE Alu 3 302 -10 682 165 0 114 chrX 29597497 29597616 -133002314 + L1MA9 LINE L1 5844 5941 -371 275 301 75 34 chrX 29597690 29597836 -133002094 - L1M4 LINE L1 -1918 4228 4077 1971 128 147 26 chrX 29597861 29598243 -133001687 + MSTA LTR MaLR 1 428 0 8620 183 31 9 chrX 29598243 29599858 -133000072 + MSTA-int LTR MaLR 1 1651 0 1914 153 153 5 chrX 29599859 29600231 -132999699 + MSTA LTR MaLR 2 428 0 22 0 0 0 chrX 29600416 29600438 -132999492 + AT_rich Low_complexity Low_complexity 1 22 0 206 219 0 0 chrX 29601645 29601686 -132998244 + (CATA)n Simple_repeat Simple_repeat 2 42 0 29 47 0 0 chrX 29601688 29601731 -132998199 + AT_rich Low_complexity Low_complexity 1 43 0 403 210 34 8 chrX 29602365 29602484 -132997446 + L1MA7 LINE L1 6165 6286 -5 3158 226 76 9 chrX 29602491 29602754 -132997176 - L1MA9 LINE L1 -235 6077 5833 189 0 0 0 chrX 29602754 29602775 -132997155 + (TG)n Simple_repeat Simple_repeat 2 22 0 3158 226 76 9 chrX 29602775 29603908 -132996022 - L1MA9 LINE L1 -479 5833 4576 1128 176 9 14 chrX 29604008 29604218 -132995712 - MER2 DNA MER2_type -135 210 2 3641 218 57 16 chrX 29604227 29605218 -132994712 - L1MA9 LINE L1 -1577 4569 3539 933 238 46 4 chrX 29605202 29605463 -132994467 + L1MA9 LINE L1 5994 6265 -47 * 1278 170 31 0 chrX 29605463 29605686 -132994244 + MER30 DNA MER1_type 1 230 0 1262 192 33 0 chrX 29607098 29607369 -132992561 + L1 LINE L1 2251 2530 -3616 * 1558 136 50 50 chrX 29607345 29607684 -132992246 + L1MA2 LINE L1 5966 6304 0 360 384 94 14 chrX 29607872 29608359 -132991571 + L3 LINE CR1 345 870 -707 294 197 47 39 chrX 29608386 29608500 -132991430 - L1MA6 LINE L1 0 6300 6181 231 232 0 0 chrX 29609408 29609464 -132990466 + (TA)n Simple_repeat Simple_repeat 2 57 0 368 404 7 7 chrX 29610610 29610761 -132989169 - L2 LINE L2 0 3272 3122 1314 158 8 13 chrX 29610769 29611003 -132988927 + MER46A DNA MER2_type 1 233 -3 1308 210 7 55 chrX 29611738 29612048 -132987882 + AluJo SINE Alu 1 295 -17 42214 41 21 1 chrX 29612586 29618617 -132981313 + L1PA3 LINE L1 2 6155 0 23 54 0 0 chrX 29618681 29618718 -132981212 + AT_rich Low_complexity Low_complexity 1 37 0 355 267 108 65 chrX 29620016 29620248 -132979682 + MIR SINE MIR 18 259 -3 804 299 25 0 chrX 29620737 29620938 -132978992 - MIR SINE MIR -34 228 23 879 219 11 0 chrX 29621441 29621624 -132978306 + MER5A DNA MER1_type 1 185 -4 734 301 68 10 chrX 29621638 29622023 -132977907 + MLT1I LTR MaLR 1 407 -2 21 95 0 0 chrX 29622251 29622314 -132977616 + AT_rich Low_complexity Low_complexity 1 63 0 294 395 68 9 chrX 29622433 29622653 -132977277 - MIR SINE MIR -29 233 1 568 135 21 0 chrX 29623427 29623523 -132976407 + L1MB8 LINE L1 6075 6172 -6 559 86 0 12 chrX 29623605 29623686 -132976244 - MADE1 DNA Mariner 0 80 1 194 337 0 41 chrX 29624417 29624515 -132975415 + MIR SINE MIR 48 141 -121 871 181 7 0 chrX 29624517 29624672 -132975258 - MIR SINE MIR -57 205 50 1234 293 65 29 chrX 29624678 29625094 -132974836 + LTR16C LTR ERVL 5 435 -56 186 333 61 30 chrX 29625634 29625733 -132974197 - L2 LINE L2 -15 3257 3156 257 326 70 41 chrX 29625825 29626067 -132973863 + L2 LINE L2 1801 2049 -1265 258 404 112 5 chrX 29626110 29626504 -132973426 + L2 LINE L2 2196 2631 -683 821 177 25 91 chrX 29628117 29628251 -132971679 + MER5A DNA MER1_type 4 122 -67 2931 155 26 12 chrX 29628251 29628818 -132971112 - L1MA5 LINE L1 0 6300 5726 821 177 25 91 chrX 29628818 29628881 -132971049 + MER5A DNA MER1_type 122 188 -1 359 289 47 23 chrX 29629024 29629152 -132970778 + MER5A DNA MER1_type 9 139 -50 1374 171 57 50 chrX 29629183 29629464 -132970466 - AluJo SINE Alu -27 285 3 2170 118 0 10 chrX 29629748 29630062 -132969868 + AluSx SINE Alu 1 311 -1 209 327 221 0 chrX 29630098 29630211 -132969719 - MIR SINE MIR -113 149 12 206 351 13 13 chrX 29631720 29631797 -132968133 + L2 LINE L2 3186 3262 -10 1282 152 29 10 chrX 29632246 29632450 -132967480 + LTR28 LTR ERV1 1 208 -812 2070 148 51 14 chrX 29632450 29632801 -132967129 + THE1B LTR MaLR 1 364 0 10747 119 10 1 chrX 29632801 29634366 -132965564 + THE1B-int LTR MaLR 1 1580 0 2054 134 57 17 chrX 29634366 29634716 -132965214 + THE1B LTR MaLR 1 364 0 215 291 18 0 chrX 29635037 29635092 -132964838 + L2 LINE L2 3250 3305 -8 206 364 101 0 chrX 29635257 29635386 -132964544 - L3 LINE CR1 -434 1143 1002 412 312 100 0 chrX 29635611 29635781 -132964149 - L3 LINE CR1 -764 813 627 761 225 29 100 chrX 29635799 29636079 -132963851 - MIR SINE MIR -1 261 2 949 194 84 28 chrX 29638735 29638998 -132960932 - L1MA8 LINE L1 -4 6296 6024 2372 118 19 16 chrX 29639129 29639492 -132960438 + THE1B LTR MaLR 1 364 0 195 42 0 0 chrX 29639635 29639659 -132960271 + (GGA)n Simple_repeat Simple_repeat 3 26 0 361 320 57 49 chrX 29639671 29639918 -132960012 + LTR16C LTR ERVL 242 490 -1 199 219 97 79 chrX 29639991 29640105 -132959825 - MIR3 SINE MIR -88 120 5 342 242 30 10 chrX 29640369 29640468 -132959462 + MIR SINE MIR 162 262 0 22 0 0 0 chrX 29641531 29641553 -132958377 + GC_rich Low_complexity Low_complexity 1 22 0 292 291 209 0 chrX 29642189 29642299 -132957631 + L2 LINE L2 3136 3268 -4 2128 136 0 3 chrX 29643556 29643866 -132956064 + AluY SINE Alu 1 309 -2 585 321 55 37 chrX 29644017 29644557 -132955373 - L2 LINE L2 0 3313 2687 3818 219 52 33 chrX 29645973 29646853 -132953077 - L1MB3 LINE L1 -3 6180 5318 2636 136 36 0 chrX 29646853 29647266 -132952664 + MSTA LTR MaLR 1 428 0 3818 219 52 33 chrX 29647266 29648325 -132951605 - L1MB3 LINE L1 -865 5318 4211 898 153 77 5 chrX 29648391 29648600 -132951330 + L1MA7 LINE L1 6068 6291 0 206 305 69 30 chrX 29649292 29649423 -132950507 + MIR SINE MIR 66 201 -61 1869 154 80 9 chrX 29650826 29651163 -132948767 - THE1B LTR MaLR -3 361 1 277 224 51 10 chrX 29651185 29651283 -132948647 + MLT1J1 LTR MaLR 345 446 0 916 306 45 38 chrX 29652353 29652752 -132947178 - L2 LINE L2 -2 3311 2910 198 0 0 0 chrX 29653191 29653213 -132946717 + (CA)n Simple_repeat Simple_repeat 2 23 0 539 269 30 0 chrX 29654169 29654303 -132945627 - MIR SINE MIR -108 154 17 430 289 19 0 chrX 29654679 29654835 -132945095 + MER110 LTR ERV1 307 465 -26 2001 139 60 58 chrX 29654973 29655406 -132944524 - L1MA4 LINE L1 -16 6284 5851 22 56 0 0 chrX 29655872 29655908 -132944022 + AT_rich Low_complexity Low_complexity 1 36 0 1463 112 123 73 chrX 29656108 29656465 -132943465 - THE1C LTR MaLR 0 375 1 9362 130 20 39 chrX 29656465 29658073 -132941857 - THE1C-int LTR MaLR 0 1580 3 1622 161 75 33 chrX 29658075 29658435 -132941495 - THE1C LTR MaLR 0 375 1 21 0 0 0 chrX 29659931 29659952 -132939978 + AT_rich Low_complexity Low_complexity 1 21 0 1335 256 49 28 chrX 29660140 29660633 -132939297 - MLT1D LTR MaLR 0 505 3 1472 12 0 6 chrX 29661208 29661380 -132938550 - L1PA5 LINE L1 -181 5973 5803 243 0 0 0 chrX 29661388 29661415 -132938515 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 1123 20 41 14 chrX 29661419 29661565 -132938365 + L1PA4 LINE L1 6006 6155 0 22 0 0 0 chrX 29661604 29661626 -132938304 + AT_rich Low_complexity Low_complexity 1 22 0 186 289 87 58 chrX 29662491 29662530 -132937400 - L2 LINE L2 -9 3263 3227 2152 40 0 90 chrX 29662530 29662831 -132937099 + AluY SINE Alu 34 307 -4 186 289 87 58 chrX 29662831 29662895 -132937035 - L2 LINE L2 -45 3227 3157 233 240 0 0 chrX 29664104 29664154 -132935776 - L2 LINE L2 -336 2977 2928 201 349 27 41 chrX 29664161 29664307 -132935623 - L2 LINE L2 -615 2699 2556 300 232 0 0 chrX 29664329 29664385 -132935545 - MER2 DNA MER2_type 0 345 290 954 144 103 5 chrX 29664385 29664579 -132935351 + L1MA1 LINE L1 6080 6292 -10 245 256 12 0 chrX 29664631 29664713 -132935217 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 * 662 199 0 30 chrX 29664699 29665072 -132934858 + (TA)n Simple_repeat Simple_repeat 1 361 0 707 184 7 7 chrX 29665178 29665325 -132934605 + L1PA15 LINE L1 6017 6163 -2 1045 171 37 0 chrX 29665325 29665512 -132934418 - MER2 DNA MER2_type -146 199 6 324 0 0 0 chrX 29667774 29667810 -132932120 + (TG)n Simple_repeat Simple_repeat 2 37 0 412 259 187 6 chrX 29668461 29668627 -132931303 + MIR SINE MIR 56 251 -11 315 0 0 0 chrX 29668901 29668936 -132930994 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 321 26 0 0 chrX 29668935 29668973 -132930957 + (GA)n Simple_repeat Simple_repeat 1 38 0 1426 133 105 59 chrX 29669160 29669484 -132930446 - MER44D DNA MER2_type 0 609 1 180 336 161 22 chrX 29669659 29669796 -132930134 - MIR SINE MIR -71 191 36 207 313 116 27 chrX 29671110 29671257 -132928673 + MER5B DNA MER1_type 2 161 -17 498 306 88 21 chrX 29671265 29671458 -132928472 + MIR SINE MIR 20 225 -37 22 70 0 0 chrX 29671658 29671701 -132928229 + AT_rich Low_complexity Low_complexity 1 43 0 7352 241 20 5 chrX 29671781 29673297 -132926633 + L1MA4A LINE L1 5 1543 -5306 * 11779 208 64 20 chrX 29673293 29675995 -132923935 + L1MA4A LINE L1 1960 4967 -2038 2284 106 0 6 chrX 29675995 29676307 -132923623 + AluY SINE Alu 1 310 -1 11779 208 64 20 chrX 29676307 29678439 -132921491 + L1MA4A LINE L1 4967 7004 -1 782 178 6 58 chrX 29678800 29678974 -132920956 - FRAM SINE Alu -11 165 1 21 57 0 0 chrX 29680299 29680334 -132919596 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chrX 29680522 29680547 -132919383 + AT_rich Low_complexity Low_complexity 1 25 0 18478 100 30 4 chrX 29682250 29685780 -132914150 - L1PA7 LINE L1 -5 6149 2515 15825 114 21 36 chrX 29685782 29689036 -132910894 + L1P3 LINE L1 424 3701 -2760 1446 165 0 125 chrX 29691491 29691819 -132908111 + AluJb SINE Alu 5 291 -11 312 108 0 62 chrX 29691828 29691893 -132908037 + L1MA9 LINE L1 6252 6312 0 1497 281 121 35 chrX 29691954 29692576 -132907354 + L2 LINE L2 2185 2859 -455 573 212 85 146 chrX 29692617 29692738 -132907192 + L2 LINE L2 2960 3087 -226 1429 177 21 42 chrX 29692738 29693026 -132906904 + AluJo SINE Alu 1 282 -30 573 212 85 146 chrX 29693026 29693267 -132906663 + L2 LINE L2 3087 3300 -13 219 150 0 0 chrX 29693948 29693988 -132905942 + (A)n Simple_repeat Simple_repeat 1 40 0 2055 121 0 0 chrX 29694038 29694327 -132905603 + AluSx SINE Alu 1 289 -23 27 0 0 0 chrX 29694505 29694532 -132905398 + AT_rich Low_complexity Low_complexity 1 27 0 226 320 49 90 chrX 29694754 29694876 -132905054 + MIR3 SINE MIR 66 182 -26 22 56 0 0 chrX 29694896 29694932 -132904998 + AT_rich Low_complexity Low_complexity 1 36 0 497 349 115 0 chrX 29695083 29695275 -132904655 + MIR SINE MIR 49 262 0 329 257 109 22 chrX 29695357 29695540 -132904390 + HAL1b LINE L1 754 952 -396 305 231 0 66 chrX 29697149 29697240 -132902690 - L1MC4 LINE L1 -1310 6732 6648 256 197 99 28 chrX 29698744 29698815 -132901115 + MIR SINE MIR 52 127 -135 21 36 0 0 chrX 29699207 29699235 -132900695 + AT_rich Low_complexity Low_complexity 1 28 0 978 302 58 37 chrX 29700352 29700786 -132899144 + LTR16A LTR ERVL 3 445 -5 195 42 0 0 chrX 29701536 29701560 -132898370 + (A)n Simple_repeat Simple_repeat 1 24 0 2499 56 0 10 chrX 29701845 29702149 -132897781 + AluY SINE Alu 1 301 -10 525 287 205 4 chrX 29702376 29702644 -132897286 + MER5C DNA MER1_type 3 324 0 2580 41 0 13 chrX 29702990 29703305 -132896625 + AluY SINE Alu 1 311 0 927 266 63 0 chrX 29703328 29703599 -132896331 + L1MB7 LINE L1 5820 6107 -77 201 175 0 0 chrX 29704056 29704096 -132895834 + (TA)n Simple_repeat Simple_repeat 1 40 0 302 254 28 0 chrX 29704248 29704390 -132895540 + (TA)n Simple_repeat Simple_repeat 1 146 0 4143 208 20 21 chrX 29705671 29706571 -132893359 + L1MD2 LINE L1 5369 6267 -92 259 278 183 0 chrX 29706694 29706809 -132893121 - L2 LINE L2 0 3313 3178 2582 171 33 6 chrX 29707179 29707698 -132892232 + L1MB4 LINE L1 5612 6144 -36 4664 165 36 21 chrX 29707703 29708668 -132891262 + L1MA8 LINE L1 5308 6291 0 258 130 19 0 chrX 29708666 29708720 -132891210 + L1MB4 LINE L1 6126 6180 0 * 282 229 14 0 chrX 29708773 29708843 -132891087 - MER58A DNA MER1_type 0 116 46 3784 126 28 16 chrX 29709117 29709348 -132890582 - L1PA15 LINE L1 -7 6158 5931 2404 63 7 7 chrX 29709348 29709648 -132890282 - AluSp SINE Alu -13 300 1 3784 126 28 16 chrX 29709648 29710034 -132889896 - L1PA15 LINE L1 -234 5931 5534 198 0 0 0 chrX 29710139 29710161 -132889769 + (CA)n Simple_repeat Simple_repeat 2 23 0 612 224 0 0 chrX 29710214 29710379 -132889551 + (TA)n Simple_repeat Simple_repeat 1 165 0 290 167 31 52 chrX 29710606 29710702 -132889228 - L1M LINE L1 -2457 5351 5258 644 322 108 21 chrX 29710762 29711324 -132888606 - L1 LINE L1 -2414 3732 3122 460 30 15 15 chrX 29713337 29713404 -132886526 + (TG)n Simple_repeat Simple_repeat 1 67 0 189 74 0 0 chrX 29714111 29714138 -132885792 + (CATTT)n Simple_repeat Simple_repeat 3 29 0 186 326 77 0 chrX 29715772 29715880 -132884050 - MIR SINE MIR -65 143 41 2027 123 3 0 chrX 29717726 29718019 -132881911 - AluSx SINE Alu -18 294 1 619 340 90 38 chrX 29718957 29719357 -132880573 + LTR33 LTR ERVL 88 508 -13 2934 70 30 2 chrX 29719950 29720349 -132879581 - L1PA7 LINE L1 -4 6150 5741 2672 86 19 0 chrX 29720349 29720709 -132879221 + L1PA7 LINE L1 5372 5738 -416 1992 108 43 0 chrX 29721418 29721696 -132878234 - AluSc SINE Alu -19 290 1 1656 273 106 22 chrX 29722129 29722894 -132877036 - L1ME3A LINE L1 -7 6163 5335 611 319 93 19 chrX 29722952 29723654 -132876276 + L1M4 LINE L1 4527 5280 -866 301 250 30 23 chrX 29723654 29723786 -132876144 - L1ME3A LINE L1 -989 5157 5025 311 147 29 29 chrX 29723789 29723857 -132876073 + LTR60 LTR ERV1 3 70 -516 735 246 78 30 chrX 29724007 29724085 -132875845 + LTR43 LTR ERV1 132 205 -397 183 42 0 0 chrX 29724085 29724109 -132875821 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 735 246 78 30 chrX 29724109 29724298 -132875632 + LTR43 LTR ERV1 205 412 -190 1105 138 36 25 chrX 29724299 29724495 -132875435 - L1PA15 LINE L1 -193 5972 5775 2137 96 7 3 chrX 29724502 29724794 -132875136 - AluSx SINE Alu -19 293 1 2358 96 0 6 chrX 29725812 29726165 -132873765 + AluSx SINE Alu 3 353 0 477 316 20 13 chrX 29727381 29727533 -132872397 + MIR SINE MIR 5 157 -105 251 341 0 0 chrX 29727725 29727813 -132872117 + MIR SINE MIR 165 252 -10 * 277 281 185 45 chrX 29727799 29727977 -132871953 - MIR SINE MIR -8 254 52 216 0 0 0 chrX 29728411 29728435 -132871495 + (A)n Simple_repeat Simple_repeat 1 24 0 1690 144 15 4 chrX 29728442 29728706 -132871224 + AluSx SINE Alu 31 297 -15 201 133 0 0 chrX 29730669 29730699 -132869231 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chrX 29731668 29731690 -132868240 + AT_rich Low_complexity Low_complexity 1 22 0 188 353 134 8 chrX 29732504 29732623 -132867307 - L2 LINE L2 0 3272 3139 8452 181 20 9 chrX 29733152 29734623 -132865307 + L1MA3 LINE L1 13 1498 -6067 3929 178 99 16 chrX 29734628 29735476 -132864454 + L1MA3 LINE L1 2701 3477 -4088 180 0 0 0 chrX 29735476 29735496 -132864434 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3929 178 99 16 chrX 29735496 29736327 -132863603 + L1MA3 LINE L1 3477 4532 -3033 3575 187 56 1 chrX 29736325 29737072 -132862858 + L1MA3 LINE L1 4846 5633 -1932 * 5598 162 34 10 chrX 29737067 29738481 -132861449 + L1MA3 LINE L1 6122 7580 -144 2388 74 0 0 chrX 29738481 29738777 -132861153 + AluY SINE Alu 1 296 -15 5598 162 34 10 chrX 29738777 29738917 -132861013 + L1MA3 LINE L1 7580 7715 -9 2178 115 0 0 chrX 29740026 29740313 -132859617 - AluSc SINE Alu -20 289 3 457 292 60 19 chrX 29740578 29740794 -132859136 + MIR SINE MIR 32 256 -6 1966 132 0 0 chrX 29740873 29741146 -132858784 + AluSx SINE Alu 1 273 -39 450 0 0 0 chrX 29741149 29741199 -132858731 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chrX 29741215 29741237 -132858693 + AT_rich Low_complexity Low_complexity 1 22 0 680 259 38 9 chrX 29742324 29742536 -132857394 - L1ME3A LINE L1 -9 6161 5944 512 276 100 18 chrX 29742696 29742866 -132857064 + MIR SINE MIR 15 198 -64 274 268 28 0 chrX 29743004 29743075 -132856855 + MIR SINE MIR 176 248 -14 610 280 125 21 chrX 29743174 29743542 -132856388 - LTR33 LTR ERVL -48 473 2 1992 101 35 10 chrX 29744437 29744725 -132855205 - AluSg SINE Alu -15 295 1 2070 131 24 0 chrX 29744922 29745213 -132854717 + AluSx SINE Alu 1 298 -14 372 77 0 0 chrX 29745225 29745277 -132854653 + (CA)n Simple_repeat Simple_repeat 2 53 0 425 216 72 9 chrX 29745924 29746035 -132853895 - MIR SINE MIR -113 149 32 180 324 134 22 chrX 29747099 29747278 -132852652 - L2 LINE L2 -264 3008 2810 1258 286 56 54 chrX 29747529 29748067 -132851863 + MLT1H LTR MaLR 3 541 -8 25 31 0 0 chrX 29748128 29748160 -132851770 + AT_rich Low_complexity Low_complexity 1 32 0 1989 124 0 7 chrX 29748439 29748721 -132851209 - AluSg SINE Alu -30 280 1 3675 248 42 46 chrX 29749627 29751410 -132848520 + L1P3 LINE L1 10 1764 -4687 * 6255 135 56 49 chrX 29751406 29752745 -132847185 + L1P LINE L1 3903 5250 -896 185 314 0 0 chrX 29753926 29753977 -132845953 + L2 LINE L2 712 762 -2552 304 277 160 29 chrX 29754368 29754606 -132845324 - L2 LINE L2 -415 2899 2631 269 274 0 16 chrX 29755074 29755136 -132844794 - MER5A DNA MER1_type -3 186 126 367 322 48 14 chrX 29755186 29755332 -132844598 + MIR3 SINE MIR 54 204 -4 325 288 75 0 chrX 29755686 29755766 -132844164 - MER5A DNA MER1_type -95 94 9 1959 281 18 14 chrX 29756259 29756810 -132843120 + MLT1H1 LTR MaLR 1 553 -2 188 200 18 0 chrX 29757235 29757290 -132842640 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 354 304 103 79 chrX 29757306 29757977 -132841953 + L2 LINE L2 1850 2536 -778 517 330 56 28 chrX 29759336 29759719 -132840211 + LTR16A1 LTR ERVL 86 457 0 2345 57 3 13 chrX 29759781 29760079 -132839851 + AluY SINE Alu 1 295 -16 2131 133 0 0 chrX 29760415 29760723 -132839207 + AluSg SINE Alu 1 308 -2 182 418 25 0 chrX 29761944 29762066 -132837864 + L2 LINE L2 3147 3271 -1 2323 99 3 0 chrX 29762350 29762654 -132837276 + AluSp SINE Alu 1 305 -8 1273 264 193 15 chrX 29763448 29764121 -132835809 + LTR50 LTR ERVL 3 795 0 21 0 0 0 chrX 29764987 29765008 -132834922 + AT_rich Low_complexity Low_complexity 1 21 0 2601 58 0 0 chrX 29765230 29765539 -132834391 + AluY SINE Alu 1 309 -2 363 258 107 103 chrX 29766086 29766338 -132833592 - MIR SINE MIR -7 255 3 198 0 0 0 chrX 29767515 29767537 -132832393 + (A)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chrX 29768010 29768036 -132831894 + AT_rich Low_complexity Low_complexity 1 26 0 2440 55 0 0 chrX 29768089 29768379 -132831551 + AluY SINE Alu 1 290 -21 2483 78 0 0 chrX 29768753 29769061 -132830869 + AluY SINE Alu 1 308 -3 1153 158 85 88 chrX 29769061 29769165 -132830765 + L1MA8 LINE L1 4954 5057 -1089 2263 101 7 0 chrX 29769165 29769463 -132830467 + AluSg SINE Alu 11 310 0 1153 158 85 88 chrX 29769463 29769756 -132830174 + L1MA8 LINE L1 5057 5350 -796 1587 57 13 35 chrX 29769826 29770054 -132829876 - L1PA8 LINE L1 -1 6171 5949 2464 156 46 4 chrX 29770063 29770563 -132829367 + L1MA8 LINE L1 5344 5864 -427 21 0 0 0 chrX 29770598 29770619 -132829311 + AT_rich Low_complexity Low_complexity 1 21 0 1171 181 127 70 chrX 29771152 29771578 -132828352 + LTR7 LTR ERV1 1 450 0 642 211 21 31 chrX 29772407 29772601 -132827329 + Charlie5 DNA MER1_type 5 196 -2416 * 684 166 183 33 chrX 29772599 29772840 -132827090 + Charlie5 DNA MER1_type 2348 2624 0 217 250 138 12 chrX 29773283 29773363 -132826567 + MIR SINE MIR 65 154 -108 321 146 0 0 chrX 29773972 29774020 -132825910 + MER5B DNA MER1_type 5 52 -126 2076 104 23 16 chrX 29774071 29774379 -132825551 - AluSq SINE Alu -3 310 1 234 350 60 8 chrX 29775002 29775119 -132824811 + MIR SINE MIR 46 168 -94 797 199 0 6 chrX 29775911 29776067 -132823863 - LTR32 LTR ERVL 0 471 317 1551 206 21 12 chrX 29776136 29776471 -132823459 - LTR32 LTR ERVL -127 344 7 1602 210 33 11 chrX 29776566 29776932 -132822998 - MLT1A2 LTR MaLR 0 374 1 288 0 0 0 chrX 29777532 29777564 -132822366 + (TG)n Simple_repeat Simple_repeat 2 33 0 297 253 21 21 chrX 29778977 29779072 -132820858 + GA-rich Low_complexity Low_complexity 4 98 0 1057 171 55 107 chrX 29780035 29780449 -132819481 - MER66A LTR ERV1 0 478 97 311 303 11 0 chrX 29780588 29780677 -132819253 - L2 LINE L2 -1 3312 3223 392 294 13 13 chrX 29780722 29780875 -132819055 + MER102b DNA MER1_type 113 265 -76 2510 71 0 3 chrX 29781081 29781391 -132818539 + AluSc SINE Alu 1 309 0 1445 223 0 17 chrX 29782036 29782332 -132817598 - AluJo SINE Alu -21 291 1 30 45 0 0 chrX 29782791 29782835 -132817095 + AT_rich Low_complexity Low_complexity 1 44 0 432 37 0 0 chrX 29783833 29783887 -132816043 + (CA)n Simple_repeat Simple_repeat 1 54 0 2216 86 40 7 chrX 29784562 29784864 -132815066 + AluSx SINE Alu 1 312 0 459 288 0 23 chrX 29785169 29785329 -132814601 - MER5B DNA MER1_type 0 178 36 501 275 116 0 chrX 29785554 29785692 -132814238 + MIR SINE MIR 2 155 -107 407 240 65 1 chrX 29785874 29786018 -132813912 - L1ME3A LINE L1 -1 6162 6000 2333 99 3 6 chrX 29786251 29786563 -132813367 - AluSx SINE Alu -1 311 1 295 327 138 44 chrX 29787144 29787409 -132812521 + L2 LINE L2 2989 3286 -27 920 258 5 14 chrX 29787409 29787630 -132812300 - MER20 DNA MER1_type 0 219 1 295 327 138 44 chrX 29787630 29787661 -132812269 + L2 LINE L2 3286 3313 0 201 152 0 0 chrX 29787661 29787694 -132812236 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 537 318 101 22 chrX 29787726 29787752 -132812178 - L2 LINE L2 -337 2977 2954 2444 136 44 7 chrX 29787752 29788165 -132811765 + MSTA LTR MaLR 1 428 0 537 318 101 22 chrX 29788165 29788496 -132811434 - L2 LINE L2 -360 2954 2592 207 0 0 0 chrX 29790838 29790861 -132809069 + (A)n Simple_repeat Simple_repeat 1 23 0 2038 101 0 44 chrX 29792112 29792428 -132807502 - AluSg SINE Alu -8 302 1 548 303 52 9 chrX 29793275 29793506 -132806424 + L1ME3A LINE L1 5371 5611 -551 327 316 74 16 chrX 29793507 29793697 -132806233 - LTR33A LTR ERVL -2 521 321 291 140 0 0 chrX 29793701 29793751 -132806179 + (GA)n Simple_repeat Simple_repeat 2 51 0 278 130 0 19 chrX 29793742 29793796 -132806134 + (GGA)n Simple_repeat Simple_repeat 2 54 0 * 314 273 111 81 chrX 29793849 29794120 -132805810 - LTR33A LTR ERVL -240 283 5 779 230 92 29 chrX 29794163 29794402 -132805528 + L1ME3A LINE L1 5703 5956 -214 222 37 0 0 chrX 29794688 29794715 -132805215 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 792 329 55 7 chrX 29795461 29795771 -132804159 + LTR16C LTR ERVL 167 491 0 304 268 6 116 chrX 29796268 29796432 -132803498 + L1ME LINE L1 5677 5822 -348 695 289 0 21 chrX 29796556 29796743 -132803187 - MIR SINE MIR -78 184 2 541 160 47 47 chrX 29796946 29797096 -132802834 + MER96B DNA MER1_type? 224 373 -44 23 33 0 0 chrX 29798058 29798088 -132801842 + AT_rich Low_complexity Low_complexity 1 30 0 948 122 20 36 chrX 29798515 29798671 -132801259 + L1MA4 LINE L1 6096 6250 -50 1598 162 54 40 chrX 29798671 29799041 -132800889 + THE1C LTR MaLR 1 375 0 948 122 20 36 chrX 29799041 29799080 -132800850 + L1MA4 LINE L1 6250 6288 -12 21 0 0 0 chrX 29799922 29799943 -132799987 + AT_rich Low_complexity Low_complexity 1 21 0 1636 153 14 4 chrX 29800061 29800336 -132799594 - AluJb SINE Alu -32 280 3 270 363 0 34 chrX 29800580 29800726 -132799204 - L2 LINE L2 -188 3084 2944 262 288 0 14 chrX 29802160 29802233 -132797697 + CT-rich Low_complexity Low_complexity 3 74 0 585 331 35 51 chrX 29802333 29802647 -132797283 - L2 LINE L2 0 3313 3005 580 287 35 17 chrX 29802993 29803223 -132796707 + L1MC/D LINE L1 5325 5558 -2250 318 215 0 0 chrX 29803496 29803575 -132796355 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 1795 137 62 16 chrX 29804129 29804450 -132795480 - MER1B DNA MER1_type -1 336 1 2047 122 16 3 chrX 29804970 29805273 -132794657 + AluSx SINE Alu 5 311 -1 1679 166 20 17 chrX 29805935 29806236 -132793694 + AluJo SINE Alu 3 304 -8 261 0 0 0 chrX 29806833 29806862 -132793068 + (T)n Simple_repeat Simple_repeat 1 29 0 3482 129 24 44 chrX 29807611 29808155 -132791775 + L1MA8 LINE L1 5620 6149 -142 2023 119 0 7 chrX 29808155 29808457 -132791473 + AluSx SINE Alu 1 300 -12 3482 129 24 44 chrX 29808457 29808592 -132791338 + L1MA8 LINE L1 6149 6285 -6 196 377 26 26 chrX 29808615 29808729 -132791201 + MIR SINE MIR 136 249 -13 220 189 0 0 chrX 29808937 29808974 -132790956 + L2 LINE L2 3265 3301 -12 619 136 0 0 chrX 29809043 29809146 -132790784 - AluSp SINE Alu 0 313 211 507 121 12 0 chrX 29809145 29809228 -132790702 - AluSp SINE Alu -189 124 41 * 33 43 0 0 chrX 29809760 29809807 -132790123 + AT_rich Low_complexity Low_complexity 1 47 0 328 282 61 49 chrX 29810659 29810904 -132789026 - L2 LINE L2 -773 2541 2294 186 43 0 0 chrX 29811109 29811132 -132788798 + (TC)n Simple_repeat Simple_repeat 1 23 0 3200 58 0 7 chrX 29811247 29811662 -132788268 - L1PA7 LINE L1 0 6154 5743 2167 151 0 8 chrX 29811662 29812019 -132787911 - MER47A DNA MER2_type -11 355 2 180 0 0 0 chrX 29812073 29812093 -132787837 + (TTA)n Simple_repeat Simple_repeat 1 20 0 183 261 23 154 chrX 29812341 29812471 -132787459 + L2 LINE L2 2925 3037 -235 181 95 24 24 chrX 29812662 29812704 -132787226 + (TTATA)n Simple_repeat Simple_repeat 3 44 0 207 179 36 36 chrX 29812721 29812805 -132787125 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 277 370 15 7 chrX 29813534 29813669 -132786261 - MER102b DNA MER1_type -10 331 196 774 234 94 15 chrX 29815970 29816171 -132783759 + AluJo SINE Alu 6 222 -90 635 218 61 87 chrX 29816650 29816706 -132783224 + MER58A DNA MER1_type 1 57 -2363 2225 27 0 0 chrX 29816706 29816965 -132782965 - AluY SINE Alu -52 259 1 635 218 61 87 chrX 29816965 29817137 -132782793 + MER58A DNA MER1_type 57 223 -1 242 314 20 0 chrX 29817137 29817239 -132782691 - L1ME LINE L1 -298 5872 5769 2248 84 3 3 chrX 29817801 29818099 -132781831 - AluSp SINE Alu -15 298 1 321 289 134 53 chrX 29818837 29819121 -132780809 - LTR33 LTR ERVL -168 353 47 255 103 0 0 chrX 29819356 29819395 -132780535 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 544 294 94 0 chrX 29819654 29819814 -132780116 + MER5B DNA MER1_type 4 178 0 320 245 20 59 chrX 29820871 29820973 -132778957 + L1MC4 LINE L1 6608 6705 -1337 1701 234 5 13 chrX 29820984 29821381 -132778549 + MER45B DNA AcHobo 405 798 -242 1901 204 74 4 chrX 29821383 29821845 -132778085 + L1 LINE L1 4282 4775 -1371 1503 147 24 0 chrX 29821841 29822093 -132777837 + L1MA9 LINE L1 6023 6280 -32 * 5416 152 17 5 chrX 29822119 29823435 -132776495 + L1PA16 LINE L1 4758 6088 -78 402 264 22 0 chrX 29823441 29823532 -132776398 + LTR28 LTR ERV1 917 1009 -11 2315 101 0 0 chrX 29823953 29824259 -132775671 + AluSx SINE Alu 6 311 -1 240 279 116 6 chrX 29824690 29824862 -132775068 + HAL1 LINE L1 2227 2417 -90 26 0 0 0 chrX 29825053 29825079 -132774851 + AT_rich Low_complexity Low_complexity 1 26 0 313 307 83 19 chrX 29825227 29825432 -132774498 - L1ME LINE L1 -2023 5785 5568 1317 212 38 7 chrX 29825559 29825852 -132774078 - L1PB4 LINE L1 -3 6153 5852 2242 87 0 3 chrX 29826295 29826593 -132773337 - AluSx SINE Alu -15 297 1 25 31 0 0 chrX 29827002 29827034 -132772896 + AT_rich Low_complexity Low_complexity 1 32 0 288 361 54 31 chrX 29827128 29827646 -132772284 - L1ME LINE L1 -1926 4220 3691 312 276 50 44 chrX 29827799 29827980 -132771950 - L1ME LINE L1 -3038 3108 2927 639 270 6 6 chrX 29828473 29828651 -132771279 + MER5B DNA MER1_type 1 178 0 327 25 0 0 chrX 29829797 29829837 -132770093 + (CA)n Simple_repeat Simple_repeat 2 41 0 417 39 0 0 chrX 29830935 29830986 -132768944 + (CA)n Simple_repeat Simple_repeat 2 52 0 736 87 9 9 chrX 29830994 29831109 -132768821 + (TAGA)n Simple_repeat Simple_repeat 1 115 0 240 111 0 0 chrX 29831858 29831894 -132768036 + (TAG)n Simple_repeat Simple_repeat 3 38 0 606 280 90 53 chrX 29831903 29832140 -132767790 - MIR SINE MIR -1 261 5 240 286 33 33 chrX 29832515 29832606 -132767324 - L2 LINE L2 0 3272 3182 23 33 0 0 chrX 29833422 29833452 -132766478 + AT_rich Low_complexity Low_complexity 1 30 0 2178 121 0 0 chrX 29833812 29834119 -132765811 - AluSg SINE Alu -3 307 1 2217 117 7 0 chrX 29834540 29834849 -132765081 + AluSx SINE Alu 1 311 -1 183 174 109 22 chrX 29835553 29835599 -132764331 - L3 LINE CR1 -951 626 577 6197 96 10 3 chrX 29836228 29837582 -132762348 - L1PA13 LINE L1 -2 6161 4798 3393 123 66 11 chrX 29887582 29888144 -132711786 - MER51A LTR ERV1 -41 593 1 378 107 0 0 chrX 29888166 29888222 -132711708 + (A)n Simple_repeat Simple_repeat 1 56 0 2392 86 3 15 chrX 29888309 29888647 -132711283 - L1PB2 LINE L1 0 6151 5818 255 265 12 0 chrX 29889484 29889567 -132710363 + HAL1 LINE L1 62 145 -2362 502 299 10 18 chrX 29889583 29889775 -132710155 - L1MD3 LINE L1 -926 6882 6655 397 325 89 37 chrX 29889902 29890339 -132709591 - L1M4 LINE L1 -1450 4696 4237 234 286 0 0 chrX 29890415 29890485 -132709445 - L1M4 LINE L1 -1975 4171 4102 261 57 0 0 chrX 29890576 29890611 -132709319 + (CA)n Simple_repeat Simple_repeat 2 36 0 389 274 12 61 chrX 29890702 29890947 -132708983 + HAL1 LINE L1 810 1042 -1465 * 3635 223 33 7 chrX 29890944 29891888 -132708042 + L1M4 LINE L1 4010 4977 -1169 1215 286 110 18 chrX 29892142 29892870 -132707060 + L2 LINE L2 2366 3166 -147 239 209 22 77 chrX 29892844 29892935 -132706995 - L2 LINE L2 -100 3213 3128 * 251 292 0 0 chrX 29894094 29894183 -132705747 - L1MC4 LINE L1 -1337 6705 6617 233 154 39 19 chrX 29894189 29894241 -132705689 + L1MC4 LINE L1 2016 2068 -4358 * 263 253 23 0 chrX 29894222 29894309 -132705621 - L1MC4 LINE L1 -1339 6703 6615 245 207 17 0 chrX 29894277 29894335 -132705595 + L1MC4 LINE L1 2006 2064 -4362 * 315 292 0 0 chrX 29894334 29894423 -132705507 - L1MC4 LINE L1 -1339 6703 6615 246 289 0 0 chrX 29894422 29894512 -132705418 + L1MC4 LINE L1 6614 6703 -1339 * 251 322 0 0 chrX 29894508 29894598 -132705332 - L1MC4 LINE L1 -1339 6703 6614 232 260 0 62 chrX 29894542 29894638 -132705292 + L1MC4 LINE L1 6614 6703 -1339 * 569 260 0 11 chrX 29894679 29894860 -132705070 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 302 299 23 0 chrX 29894965 29895052 -132704878 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 238 322 0 0 chrX 29895053 29895140 -132704790 - L1MC4 LINE L1 -1340 6702 6616 230 226 19 17 chrX 29895056 29895161 -132704769 + L1MC4 LINE L1 1995 6985 -1337 * 230 218 0 0 chrX 29895157 29895212 -132704718 + L1MC4 LINE L1 6929 6983 -1339 233 255 0 0 chrX 29895213 29895264 -132704666 + (TA)n Simple_repeat Simple_repeat 2 52 0 246 270 22 0 chrX 29895265 29895354 -132704576 + L1MC4 LINE L1 6615 6705 -1337 1053 191 40 4 chrX 29895369 29895594 -132704336 + MER46A DNA MER2_type 2 234 -2 925 219 0 0 chrX 29895804 29895968 -132703962 + MER5A DNA MER1_type 3 166 -23 292 372 101 65 chrX 29896269 29896667 -132703263 + L2 LINE L2 2854 3265 -7 1831 144 49 3 chrX 29897528 29897854 -132702076 + MER47A DNA MER2_type 26 366 0 309 197 0 0 chrX 29898769 29898835 -132701095 + (TG)n Simple_repeat Simple_repeat 2 67 0 5055 75 7 1 chrX 29899971 29900649 -132699281 + L1PA13 LINE L1 5482 6163 0 4949 88 0 0 chrX 29900853 29901513 -132698417 + PABL_A LTR ERV1 1 660 0 21 0 0 0 chrX 29902572 29902593 -132697337 + AT_rich Low_complexity Low_complexity 1 21 0 1990 127 0 0 chrX 29905357 29905640 -132694290 + AluSx SINE Alu 1 283 -29 201 289 89 22 chrX 29905917 29906007 -132693923 + L2 LINE L2 3200 3295 -18 24 32 0 0 chrX 29906400 29906431 -132693499 + AT_rich Low_complexity Low_complexity 1 31 0 30 45 0 0 chrX 29907505 29907549 -132692381 + AT_rich Low_complexity Low_complexity 1 44 0 257 314 70 0 chrX 29907854 29907940 -132691990 + MER91C DNA MER1_type 36 127 -13 22 0 0 0 chrX 29908641 29908663 -132691267 + AT_rich Low_complexity Low_complexity 1 22 0 208 380 141 0 chrX 29909899 29910175 -132689755 - L2 LINE L2 -4 3309 2995 1593 193 0 20 chrX 29910529 29910824 -132689106 - AluJo SINE Alu -23 289 1 2293 45 72 0 chrX 29911019 29911309 -132688621 + AluY SINE Alu 1 311 0 311 295 32 0 chrX 29911832 29911927 -132688003 + L2 LINE L2 3174 3271 -1 1954 195 40 42 chrX 29911993 29912495 -132687435 + MLT1D LTR MaLR 3 503 -2 275 369 40 13 chrX 29912715 29912864 -132687066 - L2 LINE L2 -210 3062 2910 207 114 0 0 chrX 29913461 29913496 -132686434 + (CA)n Simple_repeat Simple_repeat 2 36 0 211 284 15 45 chrX 29913598 29913665 -132686265 + L2 LINE L2 3207 3271 -1 540 286 77 6 chrX 29914561 29914729 -132685201 + MIR SINE MIR 25 204 -58 359 344 6 55 chrX 29915733 29915896 -132684034 + LTR16C LTR ERVL 71 225 -266 1827 124 11 11 chrX 29916094 29916412 -132683518 + AluSg SINE Alu 1 318 0 572 292 82 50 chrX 29916688 29917030 -132682900 + MLT1I LTR MaLR 57 409 0 2366 37 3 30 chrX 29918032 29918332 -132681598 + AluY SINE Alu 1 292 -19 247 280 15 30 chrX 29918636 29918768 -132681162 + (TA)n Simple_repeat Simple_repeat 1 130 0 287 225 337 0 chrX 29918980 29919069 -132680861 + MIR SINE MIR 36 154 -108 370 337 19 6 chrX 29919084 29919253 -132680677 + MIR3 SINE MIR 25 198 -10 809 302 14 0 chrX 29919321 29919543 -132680387 + MIR SINE MIR 22 246 -16 195 69 0 0 chrX 29920728 29920757 -132679173 + (GA)n Simple_repeat Simple_repeat 2 30 0 25 31 0 0 chrX 29920795 29920827 -132679103 + AT_rich Low_complexity Low_complexity 1 32 0 304 379 24 12 chrX 29921076 29921324 -132678606 - L1ME LINE L1 -384 5737 5487 273 119 0 0 chrX 29921413 29921455 -132678475 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 2176 112 3 3 chrX 29923316 29923619 -132676311 + AluSx SINE Alu 1 303 -9 189 0 0 0 chrX 29923948 29923969 -132675961 + (CACCC)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chrX 29924223 29924252 -132675678 + AT_rich Low_complexity Low_complexity 1 29 0 1395 275 50 7 chrX 29924393 29924837 -132675093 + L1MCc LINE L1 17 479 -5944 251 235 24 71 chrX 29924998 29925083 -132674847 + L1MCc LINE L1 693 773 -5650 * 1567 243 11 60 chrX 29925078 29925663 -132674267 + L1MCc LINE L1 1014 1737 -4887 1618 6 0 0 chrX 29928290 29928472 -132671458 - L1PA4 LINE L1 -2 6153 5972 238 191 0 0 chrX 29928751 29928798 -132671132 + Alu SINE Alu 3 49 -253 2287 90 0 0 chrX 29928940 29929229 -132670701 + AluSx SINE Alu 3 291 -21 214 195 52 78 chrX 29929920 29929997 -132669933 - MIR SINE MIR -72 190 116 429 95 0 0 chrX 29930086 29930149 -132669781 + (CA)n Simple_repeat Simple_repeat 2 64 0 200 259 74 115 chrX 29931308 29931477 -132668453 - MIR3 SINE MIR -70 138 10 621 278 49 19 chrX 29931792 29931997 -132667933 - MIR SINE MIR -18 244 34 198 226 61 104 chrX 29932524 29932639 -132667291 + L2 LINE L2 2309 2418 -896 2315 87 0 13 chrX 29933223 29933533 -132666397 + AluSx SINE Alu 3 308 -4 24 77 0 0 chrX 29934538 29934590 -132665340 + AT_rich Low_complexity Low_complexity 1 52 0 2061 132 0 0 chrX 29936022 29936326 -132663604 - AluSx SINE Alu -8 304 1 2277 96 0 3 chrX 29936461 29936763 -132663167 - AluSx SINE Alu -11 301 1 883 252 10 101 chrX 29937301 29937568 -132662362 - LTR37B LTR ERV1 -73 395 178 1240 129 9 14 chrX 29937568 29937778 -132662152 + L1MA2 LINE L1 6090 6298 -6 883 252 10 101 chrX 29937778 29937927 -132662003 - LTR37B LTR ERV1 -290 178 17 271 361 101 0 chrX 29937982 29938101 -132661829 - L2 LINE L2 -36 3236 3106 2447 74 0 6 chrX 29938131 29938443 -132661487 + AluSg SINE Alu 1 310 0 311 367 60 50 chrX 29938650 29938969 -132660961 - L2 LINE L2 -428 2886 2565 207 218 0 0 chrX 29939097 29939152 -132660778 + (TA)n Simple_repeat Simple_repeat 1 55 0 611 319 165 18 chrX 29939427 29940245 -132659685 - L2 LINE L2 -560 2754 1739 557 277 32 72 chrX 29940544 29940748 -132659182 + MIR SINE MIR 13 207 -55 455 250 140 0 chrX 29940748 29940912 -132659018 - MER5A DNA MER1_type 0 189 3 557 277 32 72 chrX 29940912 29940956 -132658974 + MIR SINE MIR 207 251 -11 2310 89 0 6 chrX 29941240 29941553 -132658377 - AluSq SINE Alu -2 311 1 255 61 0 0 chrX 29941571 29941604 -132658326 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1696 241 96 46 chrX 29942496 29942758 -132657172 - L1ME3 LINE L1 -115 6047 5800 2314 103 0 3 chrX 29942758 29943068 -132656862 - AluSx SINE Alu -1 311 3 1696 241 96 46 chrX 29943068 29943189 -132656741 - L1ME3 LINE L1 -362 5800 5687 1671 158 7 59 chrX 29943189 29943493 -132656437 - AluJb SINE Alu -24 288 1 1696 241 96 46 chrX 29943493 29944038 -132655892 - L1ME3 LINE L1 -475 5687 5075 306 115 0 0 chrX 29944247 29944299 -132655631 + (TC)n Simple_repeat Simple_repeat 1 52 0 2145 180 97 5 chrX 29944921 29945365 -132654565 - MER31A LTR ERV1 0 485 1 2244 102 0 13 chrX 29945443 29945747 -132654183 + AluSq SINE Alu 3 302 -11 254 270 0 0 chrX 29945802 29945865 -132654065 + MER103 DNA DNA 18 80 -86 186 43 0 0 chrX 29947358 29947381 -132652549 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2176 96 0 0 chrX 29947386 29947667 -132652263 - AluSx SINE Alu -31 281 1 235 347 35 35 chrX 29948572 29948716 -132651214 - MER5B DNA MER1_type -2 176 33 2095 129 0 0 chrX 29949497 29949815 -132650115 + AluSx SINE Alu 1 318 0 2138 112 17 0 chrX 29951060 29951354 -132648576 + AluSx SINE Alu 1 299 -13 210 222 0 0 chrX 29951354 29951390 -132648540 + polypurine Low_complexity Low_complexity 1 36 0 2236 83 0 14 chrX 29952449 29952773 -132647157 + AluSx SINE Alu 1 320 0 307 294 20 29 chrX 29953058 29953160 -132646770 + MER5A DNA MER1_type 89 189 0 188 315 45 56 chrX 29953189 29953278 -132646652 - MER5B DNA MER1_type -90 88 1 185 277 27 80 chrX 29953550 29953662 -132646268 - L2 LINE L2 -829 2485 2380 24 67 0 0 chrX 29955439 29955484 -132644446 + AT_rich Low_complexity Low_complexity 1 45 0 315 0 0 0 chrX 29955532 29955567 -132644363 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 351 78 0 0 chrX 29955566 29955617 -132644313 + (TA)n Simple_repeat Simple_repeat 1 51 0 583 244 24 8 chrX 29955933 29956060 -132643870 + MIR SINE MIR 20 148 -114 1702 117 121 15 chrX 29956062 29956335 -132643595 + AluSx SINE Alu 1 302 0 2267 121 0 0 chrX 29957028 29957341 -132642589 + AluSq SINE Alu 1 313 0 398 326 74 19 chrX 29958172 29958387 -132641543 - MIR SINE MIR 0 262 36 2194 89 0 4 chrX 29958445 29958768 -132641162 + AluSq SINE Alu 5 326 0 3023 113 2 0 chrX 29958870 29959303 -132640627 + MER57B LTR ERV1 1 434 0 2081 145 100 35 chrX 29959372 29959674 -132640256 + MSTC LTR MaLR 1 337 -91 3735 159 26 31 chrX 29959674 29960405 -132639525 + LTR8A LTR ERV1 1 727 0 2081 145 100 35 chrX 29960405 29960503 -132639427 + MSTC LTR MaLR 337 427 -1 4303 122 6 51 chrX 29960586 29961294 -132638636 + LTR8 LTR ERV1 1 676 -15 281 320 20 10 chrX 29961379 29961479 -132638451 + MER81 DNA DNA 1 101 -13 5160 73 24 0 chrX 29961637 29962312 -132637618 - LTR8 LTR ERV1 0 691 1 45315 75 23 11 chrX 29962312 29963931 -132635999 - HUERS-P1 LTR ERV1 0 6263 4664 2105 66 77 7 chrX 29963931 29964204 -132635726 - AluSp SINE Alu -21 292 1 45315 75 23 11 chrX 29964204 29965867 -132634063 - HUERS-P1 LTR ERV1 -1599 4664 3021 312 48 0 0 chrX 29965867 29965909 -132634021 + (CA)n Simple_repeat Simple_repeat 1 42 0 45315 75 23 11 chrX 29965909 29966154 -132633776 - HUERS-P1 LTR ERV1 -3242 3021 2780 2213 98 0 46 chrX 29966154 29966481 -132633449 - AluSx SINE Alu 0 312 1 45315 75 23 11 chrX 29966481 29967929 -132632001 - HUERS-P1 LTR ERV1 -3483 2780 1199 222 37 0 0 chrX 29967929 29967956 -132631974 + (GA)n Simple_repeat Simple_repeat 2 28 0 45315 75 23 11 chrX 29967956 29969169 -132630761 - HUERS-P1 LTR ERV1 -5064 1199 1 4262 71 5 13 chrX 29969169 29969814 -132630116 - LTR8 LTR ERV1 0 691 1 238 184 26 0 chrX 29971640 29971716 -132628214 + (TA)n Simple_repeat Simple_repeat 1 78 0 488 271 138 29 chrX 29972480 29972690 -132627240 + MIR SINE MIR 29 261 -1 1737 149 54 14 chrX 29972942 29973237 -132626693 - AluSx SINE Alu -5 307 1 1092 46 0 0 chrX 29973462 29973592 -132626338 + AluY SINE Alu 167 296 -15 27 62 0 0 chrX 29973610 29973658 -132626272 + AT_rich Low_complexity Low_complexity 1 48 0 2389 75 0 3 chrX 29973957 29974250 -132625680 - AluSc SINE Alu -11 298 7 668 184 0 0 chrX 29974315 29974429 -132625501 + FLAM_A SINE Alu 11 124 -18 313 233 11 0 chrX 29975218 29975308 -132624622 + (TTATA)n Simple_repeat Simple_repeat 5 95 0 251 287 50 20 chrX 29975746 29975847 -132624083 - MIR SINE MIR -71 191 88 183 367 33 17 chrX 29977523 29977643 -132622287 + L2 LINE L2 2630 2751 -563 2217 102 0 3 chrX 29977741 29978067 -132621863 - AluSx SINE Alu 0 312 1 190 319 34 92 chrX 29978226 29978345 -132621585 + L2 LINE L2 3122 3233 -39 29 60 0 0 chrX 29978728 29978778 -132621152 + AT_rich Low_complexity Low_complexity 1 50 0 287 301 98 16 chrX 29979109 29979232 -132620698 - L2 LINE L2 -1 3271 3139 2287 103 0 3 chrX 29979417 29979728 -132620202 + AluSx SINE Alu 1 310 -2 2600 52 0 0 chrX 29980857 29981166 -132618764 - AluY SINE Alu -2 309 1 2206 118 3 3 chrX 29981394 29981698 -132618232 - AluSq SINE Alu -9 304 1 2292 94 3 13 chrX 29982500 29982807 -132617123 - AluSx SINE Alu -8 304 1 560 188 30 0 chrX 29982808 29982909 -132617021 - MER3 DNA MER1_type -96 113 10 4502 57 3 20 chrX 29983523 29984107 -132615823 - LTR10C LTR ERV1 -7 584 11 616 263 58 58 chrX 29984112 29984420 -132615510 + LTR33 LTR ERVL 212 519 -2 21 57 0 0 chrX 29985234 29985269 -132614661 + AT_rich Low_complexity Low_complexity 1 35 0 2090 130 3 0 chrX 29985302 29985610 -132614320 + AluSp SINE Alu 1 309 -4 352 324 58 79 chrX 29986097 29986238 -132613692 + MIR SINE MIR 21 156 -106 2301 92 0 16 chrX 29986238 29986555 -132613375 + AluSx SINE Alu 1 312 0 352 324 58 79 chrX 29986555 29986654 -132613276 + MIR SINE MIR 156 256 -6 183 42 0 0 chrX 29987200 29987224 -132612706 + (T)n Simple_repeat Simple_repeat 1 24 0 286 310 50 66 chrX 29987758 29988000 -132611930 - MLT1L LTR MaLR -377 238 1 3380 57 9 7 chrX 29988167 29988609 -132611321 + LTR7 LTR ERV1 1 443 -7 2639 75 119 5 chrX 29989198 29989600 -132610330 + LTR7 LTR ERV1 1 448 -2 5182 163 33 1 chrX 29989972 29990939 -132608991 + L1PB3 LINE L1 4793 5813 -341 293 0 27 0 chrX 29990939 29990976 -132608954 + (CA)n Simple_repeat Simple_repeat 2 39 0 5182 163 33 1 chrX 29990976 29991330 -132608600 + L1PB3 LINE L1 5813 6154 0 2208 88 0 3 chrX 29991921 29992205 -132607725 + AluSq SINE Alu 1 283 -30 183 80 0 0 chrX 29992634 29992659 -132607271 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1889 119 7 27 chrX 29993164 29993458 -132606472 - AluSx SINE Alu -24 288 1 2113 98 37 3 chrX 29993486 29993782 -132606148 + AluSq SINE Alu 1 306 -7 21 36 0 0 chrX 29993833 29993861 -132606069 + AT_rich Low_complexity Low_complexity 1 28 0 186 71 0 0 chrX 29994858 29994886 -132605044 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 188 375 31 25 chrX 29994891 29995051 -132604879 + L2 LINE L2 2876 3036 -236 1190 182 139 73 chrX 29995162 29995601 -132604329 - Charlie4a DNA MER1_type -2 506 39 50 18 0 0 chrX 29995797 29995854 -132604076 + AT_rich Low_complexity Low_complexity 1 57 0 2061 112 0 30 chrX 29996499 29996803 -132603127 - AluSq SINE Alu -18 295 1 24 32 0 0 chrX 29996903 29996934 -132602996 + AT_rich Low_complexity Low_complexity 1 31 0 1825 130 42 13 chrX 29996954 29997271 -132602659 + MER44D DNA MER2_type 1 606 -3 1064 161 11 0 chrX 29997699 29997873 -132602057 + AluSg/x SINE Alu 135 310 0 2378 76 0 10 chrX 29997947 29998249 -132601681 - AluSq SINE Alu -14 299 1 2306 87 3 10 chrX 29999005 29999305 -132600625 - AluSq SINE Alu -15 298 1 21 57 0 0 chrX 29999587 29999622 -132600308 + AT_rich Low_complexity Low_complexity 1 35 0 2364 47 20 14 chrX 30000404 30000701 -132599229 - AluY SINE Alu -12 299 1 2022 125 3 0 chrX 30000808 30001111 -132598819 + AluSx SINE Alu 5 308 -4 1661 162 11 0 chrX 30001121 30001386 -132598544 + AluJb SINE Alu 1 268 -44 24 0 0 0 chrX 30001955 30001979 -132597951 + AT_rich Low_complexity Low_complexity 1 24 0 2018 144 35 11 chrX 30002047 30002414 -132597516 + L1MA9 LINE L1 5932 6307 -5 235 302 177 24 chrX 30002448 30002615 -132597315 - MIR SINE MIR -42 220 31 2742 7 0 0 chrX 30003005 30003302 -132596628 - AluY SINE Alu -14 297 1 230 172 17 35 chrX 30004103 30004161 -132595769 + (TA)n Simple_repeat Simple_repeat 1 57 0 192 394 0 0 chrX 30004309 30004403 -132595527 - L2 LINE L2 0 3313 3220 355 297 275 22 chrX 30004410 30004730 -132595200 - L2 LINE L2 -339 2975 2575 832 292 55 39 chrX 30005016 30005379 -132594551 - LTR16C LTR ERVL 0 491 123 2540 62 7 0 chrX 30005491 30005798 -132594132 + AluSx SINE Alu 1 309 -3 242 222 19 0 chrX 30005835 30005889 -132594041 - MIR3 SINE MIR -34 174 120 2199 112 0 7 chrX 30006121 30006425 -132593505 - AluSx SINE Alu -10 302 1 2028 133 3 0 chrX 30006836 30007158 -132592772 + AluSx SINE Alu 1 312 0 27 62 0 0 chrX 30007223 30007271 -132592659 + AT_rich Low_complexity Low_complexity 1 48 0 1768 184 15 3 chrX 30007853 30008184 -132591746 + MER7A DNA MER2_type 14 346 0 2214 116 0 3 chrX 30008297 30008608 -132591322 - AluSx SINE Alu 0 312 3 2100 124 3 7 chrX 30008775 30009082 -132590848 + AluSx SINE Alu 1 306 -6 2326 93 0 3 chrX 30009088 30009399 -132590531 + AluSg SINE Alu 1 310 0 214 337 105 0 chrX 30009469 30009555 -132590375 - L2 LINE L2 0 3313 3219 2445 78 3 0 chrX 30009635 30009942 -132589988 + AluSp SINE Alu 1 308 -5 25 65 0 0 chrX 30010221 30010267 -132589663 + AT_rich Low_complexity Low_complexity 1 46 0 994 87 0 0 chrX 30010822 30010948 -132588982 + AluSg/x SINE Alu 172 297 -13 30 27 0 0 chrX 30011072 30011109 -132588821 + AT_rich Low_complexity Low_complexity 1 37 0 840 169 0 30 chrX 30011266 30011432 -132588498 + MER5A DNA MER1_type 29 189 0 28 0 0 0 chrX 30011821 30011849 -132588081 + AT_rich Low_complexity Low_complexity 1 28 0 228 253 0 0 chrX 30012492 30012567 -132587363 + (TA)n Simple_repeat Simple_repeat 1 75 0 279 0 0 0 chrX 30014218 30014249 -132585681 + (T)n Simple_repeat Simple_repeat 1 31 0 229 222 0 0 chrX 30014257 30014302 -132585628 + L2 LINE L2 3262 3306 -7 228 35 0 0 chrX 30015437 30015466 -132584464 + (TA)n Simple_repeat Simple_repeat 1 29 0 2284 50 14 0 chrX 30015466 30015743 -132584187 - AluSp SINE Alu -32 281 1 320 248 119 34 chrX 30015751 30015952 -132583978 - MIR SINE MIR -11 251 35 338 263 203 0 chrX 30015958 30016076 -132583854 - MER5A DNA MER1_type -1 188 47 192 40 0 0 chrX 30016077 30016102 -132583828 + (CTG)n Simple_repeat Simple_repeat 1 25 0 542 227 187 40 chrX 30016145 30016295 -132583635 + MER5B DNA MER1_type 3 174 -4 322 266 162 26 chrX 30016310 30016464 -132583466 + MER5B DNA MER1_type 3 177 -1 225 333 0 14 chrX 30017510 30017579 -132582351 + MIR SINE MIR 76 143 -119 572 299 85 31 chrX 30017609 30017833 -132582097 + MIR SINE MIR 27 262 0 1089 167 5 9 chrX 30019421 30019636 -132580294 + L1MA7 LINE L1 6077 6290 -1 263 302 47 57 chrX 30020069 30020175 -132579755 + L2 LINE L2 3133 3237 -35 384 237 68 26 chrX 30020309 30020499 -132579431 + L1ME4a LINE L1 5709 5906 -215 747 296 28 24 chrX 30020526 30020776 -132579154 + MIR SINE MIR 12 262 0 304 294 84 8 chrX 30020803 30020922 -132579008 + L1ME4a LINE L1 5989 6116 -5 1360 150 154 19 chrX 30020925 30021191 -132578739 + AluJo SINE Alu 1 302 0 1877 194 14 19 chrX 30021377 30021744 -132578186 + MLT1A1 LTR MaLR 1 365 0 29 94 0 0 chrX 30021844 30021929 -132578001 + AT_rich Low_complexity Low_complexity 1 85 0 215 226 19 19 chrX 30022553 30022606 -132577324 + L2 LINE L2 3261 3313 0 636 215 19 148 chrX 30022839 30023095 -132576835 - MIR SINE MIR -25 237 15 202 244 134 47 chrX 30023133 30023260 -132576670 - MIR SINE MIR -58 204 67 1334 184 62 0 chrX 30023923 30024179 -132575751 + AluJo SINE Alu 5 276 -36 377 136 0 17 chrX 30024180 30024239 -132575691 + MSTA LTR MaLR 1 58 -368 615 155 0 0 chrX 30024239 30024336 -132575594 - AluSq SINE Alu -13 300 204 289 146 0 0 chrX 30024336 30024377 -132575553 - AluSq SINE Alu -132 171 131 * 2299 157 16 0 chrX 30024374 30024750 -132575180 + MSTA LTR MaLR 47 428 0 252 0 0 0 chrX 30024761 30024789 -132575141 + (A)n Simple_repeat Simple_repeat 1 28 0 487 292 45 7 chrX 30025369 30025523 -132574407 + MIR3 SINE MIR 44 203 -5 587 249 70 35 chrX 30025920 30026121 -132573809 - MIR SINE MIR -54 208 1 2228 113 3 0 chrX 30026974 30027276 -132572654 - AluSq SINE Alu -9 304 2 22 0 0 0 chrX 30028058 30028080 -132571850 + AT_rich Low_complexity Low_complexity 1 22 0 291 333 89 30 chrX 30028230 30028398 -132571532 - MIR SINE MIR -79 183 6 2441 117 5 17 chrX 30029068 30029479 -132570451 + L1MA4 LINE L1 5894 6299 -1 422 309 130 45 chrX 30030130 30030399 -132569531 + L2 LINE L2 2928 3219 -94 207 241 19 37 chrX 30030431 30030485 -132569445 + MIR SINE MIR 93 145 -63 26 50 0 0 chrX 30030510 30030550 -132569380 + AT_rich Low_complexity Low_complexity 1 40 0 1138 141 45 56 chrX 30030655 30030768 -132569162 - L1MB7 LINE L1 0 6184 6071 2252 107 0 28 chrX 30030768 30031086 -132568844 - AluSc SINE Alu 0 309 1 1138 141 45 56 chrX 30031086 30031241 -132568689 - L1MB7 LINE L1 -113 6071 5919 31 26 0 0 chrX 30031244 30031282 -132568648 + AT_rich Low_complexity Low_complexity 1 38 0 507 297 71 29 chrX 30031302 30031539 -132568391 - MIR SINE MIR 0 262 20 2156 101 3 3 chrX 30031718 30032014 -132567916 - AluSg SINE Alu -14 296 1 21 82 0 0 chrX 30032715 30032764 -132567166 + AT_rich Low_complexity Low_complexity 1 49 0 2231 236 31 34 chrX 30033744 30033864 -132566066 + MLT1H1 LTR MaLR 3 122 -433 3013 142 13 55 chrX 30033864 30034413 -132565517 - MER1A DNA MER1_type -1 526 1 2231 236 31 34 chrX 30034413 30034847 -132565083 + MLT1H1 LTR MaLR 122 555 0 296 300 150 61 chrX 30035117 30035185 -132564745 + L2 LINE L2 2809 2870 -443 2272 93 3 3 chrX 30035185 30035487 -132564443 - AluSx SINE Alu -10 302 1 296 300 150 61 chrX 30035487 30035745 -132564185 + L2 LINE L2 2870 3164 -149 405 274 59 10 chrX 30036496 30036598 -132563332 + MIR SINE MIR 41 147 -115 229 50 0 50 chrX 30036601 30036641 -132563289 + L1MA10 LINE L1 6296 6333 -1 276 30 0 0 chrX 30037049 30037082 -132562848 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1939 130 0 14 chrX 30037082 30037366 -132562564 - AluSx SINE Alu -32 280 1 2254 102 3 3 chrX 30038021 30038334 -132561596 + AluSp SINE Alu 1 313 0 24 67 0 0 chrX 30038504 30038549 -132561381 + AT_rich Low_complexity Low_complexity 1 45 0 2058 108 0 0 chrX 30039007 30039275 -132560655 + AluSq SINE Alu 1 268 -45 2272 116 0 0 chrX 30040206 30040508 -132559422 - AluSx SINE Alu -10 302 1 1234 193 133 11 chrX 30040570 30040834 -132559096 + AluJo SINE Alu 2 297 -5 215 200 0 22 chrX 30041714 30041759 -132558171 - L3 LINE CR1 -1098 479 436 1771 212 54 62 chrX 30041951 30042417 -132557513 - MLT1C LTR MaLR 0 467 6 2112 108 3 7 chrX 30042566 30042861 -132557069 + AluSq SINE Alu 1 294 -19 4536 62 0 0 chrX 30044181 30044750 -132555180 - L1PA7 LINE L1 -3 6151 5583 2196 150 23 0 chrX 30044834 30045188 -132554742 + MER47A DNA MER2_type 3 364 -2 384 281 92 38 chrX 30045244 30045429 -132554501 - MER91A DNA MER1_type 0 196 2 252 280 84 19 chrX 30045958 30046065 -132553865 - MIR SINE MIR -60 202 89 549 271 17 40 chrX 30046108 30046285 -132553645 - MIR SINE MIR -27 235 63 402 338 65 0 chrX 30046316 30046470 -132553460 - MIR SINE MIR -50 212 49 228 397 34 11 chrX 30046945 30047124 -132552806 + MIR SINE MIR 14 196 -66 2074 105 3 0 chrX 30048147 30048433 -132551497 + AluSx SINE Alu 1 287 -25 228 278 0 22 chrX 30048454 30048544 -132551386 - L1MC4 LINE L1 -1339 6703 6616 21 36 0 0 chrX 30048920 30048948 -132550982 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chrX 30049153 30049181 -132550749 + AT_rich Low_complexity Low_complexity 1 28 0 364 255 113 14 chrX 30049658 30049799 -132550131 - MER117 DNA MER1_type -34 163 9 207 100 0 0 chrX 30051643 30051673 -132548257 + (TA)n Simple_repeat Simple_repeat 2 31 0 278 302 73 0 chrX 30051869 30051965 -132547965 - L2 LINE L2 -2 3311 3209 236 266 13 0 chrX 30052326 30052405 -132547525 - L1MC4 LINE L1 0 8042 7963 721 308 30 13 chrX 30052632 30052866 -132547064 + MIR SINE MIR 3 240 -22 213 94 0 0 chrX 30052993 30053025 -132546905 + (TG)n Simple_repeat Simple_repeat 2 33 0 783 175 0 19 chrX 30054584 30054738 -132545192 - L1PB3 LINE L1 -1 6153 6003 203 206 0 0 chrX 30055059 30055093 -132544837 + L2 LINE L2 3193 3226 -87 27 0 0 0 chrX 30055243 30055270 -132544660 + AT_rich Low_complexity Low_complexity 1 27 0 1271 211 50 0 chrX 30055369 30055668 -132544262 - MER33 DNA MER1_type -10 314 1 1104 226 4 8 chrX 30055727 30055993 -132543937 - L1M4 LINE L1 -1157 4989 4725 293 264 42 0 chrX 30056996 30057068 -132542862 - L2 LINE L2 -4 3268 3194 186 43 0 0 chrX 30058927 30058950 -132540980 + (A)n Simple_repeat Simple_repeat 1 23 0 184 286 170 27 chrX 30060398 30060545 -132539385 - MIR SINE MIR -13 249 82 * 360 298 84 8 chrX 30060519 30060650 -132539280 + MIR SINE MIR 20 160 -102 481 270 25 70 chrX 30060740 30060940 -132538990 - MIR SINE MIR -14 248 58 225 0 0 0 chrX 30061452 30061477 -132538453 + (TG)n Simple_repeat Simple_repeat 1 25 0 2171 114 0 3 chrX 30061546 30061853 -132538077 + AluSq SINE Alu 1 306 -7 798 293 91 28 chrX 30061853 30062215 -132537715 - LTR16A1 LTR ERVL -70 387 3 2155 94 0 3 chrX 30062263 30062578 -132537352 - AluSx SINE Alu 0 314 1 850 161 13 0 chrX 30062586 30062735 -132537195 - L1MB1 LINE L1 -1 6167 6017 569 287 67 12 chrX 30063143 30063397 -132536533 + MLT1J LTR MaLR 244 511 0 2535 49 0 3 chrX 30064304 30064612 -132535318 + AluY SINE Alu 1 307 -4 2183 98 20 0 chrX 30064731 30065028 -132534902 - AluSp SINE Alu -10 303 1 255 125 0 0 chrX 30065316 30065356 -132534574 + (CA)n Simple_repeat Simple_repeat 1 40 0 609 334 81 62 chrX 30065459 30065926 -132534004 + MLT1K LTR MaLR 81 556 -32 183 377 82 0 chrX 30065986 30066108 -132533822 + MIR3 SINE MIR 31 162 -46 485 242 24 8 chrX 30066452 30066576 -132533354 + MIR SINE MIR 119 244 -18 24 0 0 0 chrX 30067122 30067146 -132532784 + AT_rich Low_complexity Low_complexity 1 24 0 1653 171 0 30 chrX 30067167 30067466 -132532464 - AluJo SINE Alu -22 290 1 23 101 0 0 chrX 30067971 30068050 -132531880 + AT_rich Low_complexity Low_complexity 1 79 0 21 0 0 0 chrX 30069489 30069510 -132530420 + AT_rich Low_complexity Low_complexity 1 21 0 2497 71 0 0 chrX 30069604 30069914 -132530016 - AluSg SINE Alu 0 310 1 23 54 0 0 chrX 30070132 30070169 -132529761 + AT_rich Low_complexity Low_complexity 1 37 0 470 241 57 43 chrX 30070204 30070345 -132529585 + MIR SINE MIR 50 192 -70 222 344 71 52 chrX 30070363 30070671 -132529259 + L2 LINE L2 2127 2440 -874 570 113 105 23 chrX 30070761 30070894 -132529036 + MER103 DNA DNA 1 144 -22 25 31 0 0 chrX 30071505 30071537 -132528393 + AT_rich Low_complexity Low_complexity 1 32 0 257 231 26 26 chrX 30072687 30072765 -132527165 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 273 294 43 11 chrX 30072970 30073062 -132526868 + MIR3 SINE MIR 114 208 0 255 31 0 0 chrX 30073127 30073159 -132526771 + (TC)n Simple_repeat Simple_repeat 1 32 0 2018 160 51 11 chrX 30073575 30073950 -132525980 + MLT1B LTR MaLR 1 390 0 2836 16 0 0 chrX 30075361 30075679 -132524251 - AluYb8 SINE Alu 0 318 1 702 0 114 0 chrX 30075756 30075914 -132524016 + (TA)n Simple_repeat Simple_repeat 1 176 0 2119 124 0 6 chrX 30076302 30076616 -132523314 - AluSx SINE Alu 0 312 1 2215 112 0 0 chrX 30077917 30078212 -132521718 + AluSx SINE Alu 1 295 -17 189 363 37 22 chrX 30078766 30078901 -132521029 - L2 LINE L2 0 3313 3177 315 0 0 0 chrX 30080625 30080660 -132519270 + (TG)n Simple_repeat Simple_repeat 2 36 0 306 402 61 12 chrX 30081074 30081400 -132518530 - L2 LINE L2 -340 2974 2633 246 268 0 0 chrX 30081676 30081732 -132518198 + L2 LINE L2 3254 3309 -4 4081 214 55 32 chrX 30082125 30082334 -132517596 - L1MD2 LINE L1 -10 6349 6146 210 37 0 0 chrX 30082334 30082361 -132517569 + (TG)n Simple_repeat Simple_repeat 1 27 0 4081 214 55 32 chrX 30082361 30083222 -132516708 - L1MD2 LINE L1 -213 6146 5254 1165 320 106 43 chrX 30083790 30083970 -132515960 - L2 LINE L2 -337 2977 2810 180 0 0 0 chrX 30083970 30083990 -132515940 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1165 320 106 43 chrX 30083990 30084818 -132515112 - L2 LINE L2 -504 2810 1905 23 68 0 0 chrX 30085487 30085531 -132514399 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chrX 30085706 30085736 -132514194 + AT_rich Low_complexity Low_complexity 1 30 0 2355 88 3 0 chrX 30085818 30086123 -132513807 - AluSx SINE Alu -6 306 1 321 276 26 86 chrX 30086372 30086488 -132513442 - MER91C DNA MER1_type -18 122 14 574 349 13 8 chrX 30087164 30087399 -132512531 + MIR SINE MIR 15 250 -12 707 365 59 13 chrX 30088837 30089308 -132510622 + L2 LINE L2 2485 2977 -337 333 267 0 23 chrX 30089545 30089631 -132510299 + L2 LINE L2 3189 3272 0 191 35 0 35 chrX 30091239 30091268 -132508662 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1434 85 25 0 chrX 30091762 30091963 -132507967 - L1PA13 LINE L1 -2 6161 5956 305 206 147 0 chrX 30093287 30093389 -132506541 + MER69A DNA AcHobo 48 164 -13 572 205 154 13 chrX 30097920 30098076 -132501854 + MER5A DNA MER1_type 11 188 -1 1790 208 157 50 chrX 30098518 30099138 -132500792 - L1MC2 LINE L1 0 6740 6073 492 209 5 105 chrX 30099181 30099391 -132500539 - L1MC2 LINE L1 -1486 5054 4866 1627 203 4 0 chrX 30099564 30099845 -132500085 - AluJo SINE Alu -30 282 1 4189 180 21 26 chrX 30099894 30099945 -132499985 - L1 LINE L1 -760 5780 5730 1582 174 42 3 chrX 30099945 30100232 -132499698 + AluJb SINE Alu 1 298 -14 4189 180 21 26 chrX 30100232 30101145 -132498785 - L1 LINE L1 -810 5730 4821 2278 120 6 8 chrX 30101146 30101503 -132498427 + L1PA16 LINE L1 5802 6157 -9 1965 272 29 30 chrX 30102214 30102507 -132497423 - L1M4 LINE L1 -1535 4611 4319 782 179 26 0 chrX 30102507 30102663 -132497267 - L1MB1 LINE L1 -1 6167 6008 1965 272 29 30 chrX 30102663 30103123 -132496807 - L1M4 LINE L1 -1827 4319 3859 531 232 7 7 chrX 30103131 30103282 -132496648 - L1M4 LINE L1 -2402 3744 3594 * 2538 214 127 38 chrX 30103273 30104187 -132495743 - L1MC2 LINE L1 -4656 1884 890 441 0 0 0 chrX 30104199 30104248 -132495682 + (TG)n Simple_repeat Simple_repeat 2 50 0 470 323 5 15 chrX 30104726 30104921 -132495009 - LTR33 LTR ERVL -1 520 328 6205 208 68 28 chrX 30106402 30107920 -132492010 + L1MC1 LINE L1 3121 4577 -1756 1978 119 0 18 chrX 30107920 30108230 -132491700 + AluSx SINE Alu 1 305 0 6205 208 68 28 chrX 30108230 30109786 -132490144 + L1MC1 LINE L1 4577 6327 -6 4904 221 28 26 chrX 30109761 30111680 -132488250 + L1MD1 LINE L1 4288 6217 -25 * 233 314 0 0 chrX 30111697 30111748 -132488182 - MER58 DNA MER1_type -2369 51 1 226 191 0 0 chrX 30112479 30112521 -132487409 - MER69 DNA AcHobo -2476 50 9 216 0 0 0 chrX 30112605 30112629 -132487301 + (GA)n Simple_repeat Simple_repeat 2 25 0 306 0 0 0 chrX 30113171 30113205 -132486725 + (TG)n Simple_repeat Simple_repeat 2 35 0 388 63 14 0 chrX 30113604 30113667 -132486263 - Alu SINE Alu -7 295 247 2300 214 42 67 chrX 30113671 30114853 -132485077 - L1MC/D LINE L1 -637 5605 4462 29 0 0 0 chrX 30115333 30115362 -132484568 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 30115850 30115872 -132484058 + AT_rich Low_complexity Low_complexity 1 22 0 782 300 72 62 chrX 30116416 30116903 -132483027 - LTR33 LTR ERVL -2 519 28 1673 199 17 9 chrX 30116911 30117345 -132482585 + L1MEc LINE L1 1691 2185 -4422 1562 124 0 4 chrX 30117501 30117726 -132482204 + AluSq SINE Alu 1 224 -89 1539 188 36 22 chrX 30117757 30118113 -132481817 + L1MA7 LINE L1 5930 6290 -1 2839 225 30 37 chrX 30118143 30118903 -132481027 + L1MD2 LINE L1 5603 6357 -2 296 137 20 0 chrX 30119088 30119139 -132480791 - L1MA3 LINE L1 0 6305 6254 318 123 0 0 chrX 30119241 30119298 -132480632 + (TG)n Simple_repeat Simple_repeat 1 57 0 389 291 115 18 chrX 30119300 30119465 -132480465 + MIR SINE MIR 82 262 0 624 258 48 83 chrX 30120228 30120296 -132479634 - MIR SINE MIR -1 261 192 443 215 58 29 chrX 30120296 30120468 -132479462 + MER104 DNA MER2_type 1 177 -3 624 258 48 83 chrX 30120468 30120651 -132479279 - MIR SINE MIR -70 192 19 2376 58 0 3 chrX 30120789 30121105 -132478825 - AluY SINE Alu 0 318 4 2134 120 7 0 chrX 30121155 30121455 -132478475 - AluSq SINE Alu -9 304 3 448 57 0 29 chrX 30122055 30122125 -132477805 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 2205 125 0 3 chrX 30122125 30122437 -132477493 - AluSq SINE Alu -2 311 1 249 128 0 0 chrX 30123387 30123434 -132476496 + (TG)n Simple_repeat Simple_repeat 2 48 0 227 279 98 0 chrX 30123542 30123603 -132476327 - MIR SINE MIR -112 150 84 2281 83 0 52 chrX 30123867 30124194 -132475736 + AluSx SINE Alu 1 310 -2 5700 150 47 25 chrX 30124513 30124680 -132475250 - L1MA8 LINE L1 -3 6288 6126 1589 162 101 0 chrX 30124680 30125007 -132474923 + MER46B DNA MER2_type 2 236 0 5700 150 47 25 chrX 30125007 30126674 -132473256 - L1MA8 LINE L1 -165 6126 4496 1972 125 0 0 chrX 30126674 30126954 -132472976 - AluSx SINE Alu -32 280 1 5700 150 47 25 chrX 30126954 30127006 -132472924 - L1MA8 LINE L1 -1795 4496 4447 5658 113 0 10 chrX 30127006 30128131 -132471799 - L1PB1 LINE L1 -1 6150 5017 5700 150 47 25 chrX 30128131 30128243 -132471687 - L1MA8 LINE L1 -1844 4447 4243 3387 164 29 14 chrX 30128240 30128861 -132471069 + L1PB4 LINE L1 5448 6077 -79 * 24 53 0 0 chrX 30128881 30128919 -132471011 + AT_rich Low_complexity Low_complexity 1 38 0 1122 144 64 0 chrX 30128926 30129114 -132470816 - L1MA8 LINE L1 -1917 4229 4030 2145 121 0 0 chrX 30131571 30131876 -132468054 - AluSg SINE Alu -5 305 1 186 133 0 0 chrX 30132454 30132484 -132467446 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2257 68 0 0 chrX 30132912 30133233 -132466697 - AluY SINE Alu 0 321 1 2267 110 0 0 chrX 30134033 30134343 -132465587 - AluSq SINE Alu -3 310 1 249 232 0 0 chrX 30134978 30135047 -132464883 + (TA)n Simple_repeat Simple_repeat 2 70 0 2028 123 0 77 chrX 30135052 30135417 -132464513 - MER1B DNA MER1_type 0 337 1 234 208 56 0 chrX 30135426 30135498 -132464432 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 29 78 0 0 chrX 30135646 30135710 -132464220 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chrX 30135734 30135756 -132464174 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrX 30136038 30136064 -132463866 + AT_rich Low_complexity Low_complexity 1 26 0 362 273 121 18 chrX 30136229 30136394 -132463536 + MLT1L LTR MaLR 22 203 -412 201 129 0 0 chrX 30137127 30137158 -132462772 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 21 0 0 0 chrX 30137753 30137774 -132462156 + AT_rich Low_complexity Low_complexity 1 21 0 629 161 18 0 chrX 30137977 30138089 -132461841 + L1MA4 LINE L1 6180 6293 -7 253 305 162 24 chrX 30140450 30140617 -132459313 + MIR3 SINE MIR 15 204 -4 21 36 0 0 chrX 30141415 30141443 -132458487 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chrX 30141524 30141573 -132458357 + AT_rich Low_complexity Low_complexity 1 49 0 1352 184 40 7 chrX 30144044 30144322 -132455608 - L1MC1 LINE L1 0 6333 6047 1224 162 4 58 chrX 30144322 30144563 -132455367 + MER46A DNA MER2_type 4 231 -5 2950 163 25 42 chrX 30144563 30145157 -132454773 - L1MC1 LINE L1 -297 6036 5453 360 0 0 0 chrX 30146520 30146560 -132453370 + (CA)n Simple_repeat Simple_repeat 2 41 0 309 26 0 0 chrX 30146817 30146855 -132453075 + (CCA)n Simple_repeat Simple_repeat 3 40 0 443 257 66 46 chrX 30146988 30147338 -132452592 + L1ME LINE L1 857 1213 -4906 225 286 26 90 chrX 30147350 30147616 -132452314 + L1ME LINE L1 4659 4907 -1222 403 309 143 0 chrX 30147746 30148005 -132451925 + L1ME LINE L1 5273 5568 -579 29 0 0 0 chrX 30148321 30148350 -132451580 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 30148762 30148783 -132451147 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 30149140 30149162 -132450768 + AT_rich Low_complexity Low_complexity 1 22 0 5734 167 51 40 chrX 30151655 30152886 -132447044 + L1PA16 LINE L1 3908 5124 -1042 2071 128 7 0 chrX 30152886 30153182 -132446748 - AluSx SINE Alu -14 298 1 5734 167 51 40 chrX 30153182 30153537 -132446393 + L1PA16 LINE L1 5124 5473 -693 1700 158 53 0 chrX 30153537 30153822 -132446108 + AluSx SINE Alu 1 300 -12 5734 167 51 40 chrX 30153822 30154468 -132445462 + L1PA16 LINE L1 5473 6166 0 26 30 0 0 chrX 30156079 30156112 -132443818 + AT_rich Low_complexity Low_complexity 1 33 0 2378 79 3 13 chrX 30156377 30156692 -132443238 + AluSx SINE Alu 1 312 0 2366 98 0 0 chrX 30156770 30157076 -132442854 - AluSx SINE Alu -6 306 1 303 311 160 0 chrX 30157815 30157921 -132442009 + L2 LINE L2 3148 3270 -2 244 322 50 33 chrX 30158975 30159096 -132440834 - MIR3 SINE MIR -19 189 67 355 280 143 16 chrX 30160159 30160341 -132439589 + MIR SINE MIR 11 215 -47 24 32 0 0 chrX 30161198 30161229 -132438701 + AT_rich Low_complexity Low_complexity 1 31 0 938 241 49 52 chrX 30161680 30162028 -132437902 - L1MD2 LINE L1 -15 6604 6258 1537 186 13 0 chrX 30162032 30162339 -132437591 + L1MB5 LINE L1 5864 6174 0 269 206 59 88 chrX 30162660 30162720 -132437210 - L1MD2 LINE L1 -380 6239 6182 1521 192 26 10 chrX 30162720 30163022 -132436908 + AluJo SINE Alu 3 309 -3 269 206 59 88 chrX 30163022 30163063 -132436867 - L1MD2 LINE L1 -437 6182 6141 3956 128 6 8 chrX 30163065 30163696 -132436234 - L1PA16 LINE L1 -3 6163 5534 1869 258 13 7 chrX 30163702 30164241 -132435689 + L1P LINE L1 2377 2918 -3228 2525 222 78 34 chrX 30164248 30164924 -132435006 - L1MD2 LINE L1 -475 6144 5500 1652 148 0 4 chrX 30164924 30165174 -132434756 - AluSx SINE Alu -61 251 3 2525 222 78 34 chrX 30165174 30165460 -132434470 - L1MD2 LINE L1 -1119 5500 5228 912 99 56 12 chrX 30165460 30165621 -132434309 + L1MA10 LINE L1 6165 6332 -2 2525 222 78 34 chrX 30165621 30166101 -132433829 - L1MD2 LINE L1 -1391 5228 4636 2210 107 0 0 chrX 30166103 30166401 -132433529 - AluSx SINE Alu -14 298 1 2270 282 50 18 chrX 30166407 30167209 -132432721 - L1MD2 LINE L1 -5334 1075 339 2194 287 21 31 chrX 30167217 30167953 -132431977 - L1MDb LINE L1 -5762 647 7 2082 79 57 7 chrX 30168157 30168437 -132431493 + AluSq SINE Alu 9 302 -11 22 80 0 0 chrX 30168564 30168614 -132431316 + AT_rich Low_complexity Low_complexity 1 50 0 2315 60 7 0 chrX 30168629 30168933 -132430997 + AluY SINE Alu 1 306 0 27 0 0 0 chrX 30168994 30169021 -132430909 + AT_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chrX 30170202 30170223 -132429707 + (TG)n Simple_repeat Simple_repeat 2 22 0 833 278 86 24 chrX 30171685 30172023 -132427907 + MLT1J2 LTR MaLR 78 436 -14 844 222 14 27 chrX 30172133 30172354 -132427576 - MER20 DNA MER1_type 0 219 2 224 315 0 56 chrX 30172732 30172875 -132427055 + L2 LINE L2 2460 2594 -720 318 359 46 15 chrX 30173501 30173696 -132426234 + L2 LINE L2 2843 3043 -229 21 36 0 0 chrX 30173985 30174013 -132425917 + AT_rich Low_complexity Low_complexity 1 28 0 444 342 71 67 chrX 30174826 30175501 -132424429 + L2 LINE L2 2270 2947 -367 3892 89 19 0 chrX 30175834 30176376 -132423554 + L1P LINE L1 3674 4225 -1921 24 0 0 0 chrX 30176446 30176470 -132423460 + AT_rich Low_complexity Low_complexity 1 24 0 350 301 86 67 chrX 30176486 30176872 -132423058 - L1ME4a LINE L1 -61 6871 6479 364 341 129 21 chrX 30177715 30178134 -132421796 + L2 LINE L2 2829 3292 -21 1040 288 88 32 chrX 30178138 30178548 -132421382 - MLT1J LTR MaLR 0 511 79 406 276 0 0 chrX 30178698 30178796 -132421134 - L1ME4a LINE L1 -1178 5779 5682 1284 229 20 47 chrX 30178945 30179246 -132420684 - L1ME4a LINE L1 -6557 302 10 1769 220 33 8 chrX 30179945 30180341 -132419589 - MER63B DNA MER1_type -28 408 3 213 281 11 0 chrX 30180355 30180444 -132419486 + (TA)n Simple_repeat Simple_repeat 2 91 0 244 336 69 30 chrX 30180661 30180792 -132419138 - L2 LINE L2 0 3272 3137 3404 170 111 15 chrX 30182225 30182966 -132416964 + L1MA9 LINE L1 5491 6302 -10 238 346 93 0 chrX 30183521 30183628 -132416302 - MLT1I LTR MaLR -78 331 215 * 635 304 43 16 chrX 30183622 30183875 -132416055 - MLT1I LTR MaLR -148 261 2 270 333 50 25 chrX 30184147 30184306 -132415624 + MIR SINE MIR 49 211 -51 22 0 0 0 chrX 30184683 30184705 -132415225 + AT_rich Low_complexity Low_complexity 1 22 0 1217 184 224 3 chrX 30185393 30185692 -132414238 + MLT1A1 LTR MaLR 1 365 0 1145 165 86 131 chrX 30186421 30186803 -132413127 - MLT1A1 LTR MaLR 0 365 1 27 49 0 0 chrX 30186847 30186888 -132413042 + AT_rich Low_complexity Low_complexity 1 41 0 670 276 91 38 chrX 30186939 30187279 -132412651 - L1ME4a LINE L1 -252 5869 5512 28 29 0 0 chrX 30187320 30187355 -132412575 + AT_rich Low_complexity Low_complexity 1 35 0 3796 135 33 9 chrX 30187491 30188159 -132411771 - L1MC1 LINE L1 0 6333 5650 2498 89 27 16 chrX 30188411 30188782 -132411148 + THE1C LTR MaLR 1 375 0 33 73 0 0 chrX 30188900 30188968 -132410962 + AT_rich Low_complexity Low_complexity 1 68 0 7721 22 0 0 chrX 30189052 30190470 -132409460 + L1PA3 LINE L1 4735 6152 -3 282 374 0 38 chrX 30191018 30191149 -132408781 - L3 LINE CR1 -19 1558 1433 497 208 62 99 chrX 30191690 30191882 -132408048 + MIR SINE MIR 2 186 -76 294 265 0 139 chrX 30192030 30192181 -132407749 - L3 LINE CR1 -155 1422 1293 30 45 0 0 chrX 30192207 30192251 -132407679 + AT_rich Low_complexity Low_complexity 1 44 0 2160 84 14 3 chrX 30192302 30192589 -132407341 + AluSx SINE Alu 1 290 -22 255 61 0 0 chrX 30194369 30194402 -132405528 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 24 53 0 0 chrX 30195222 30195260 -132404670 + AT_rich Low_complexity Low_complexity 1 38 0 316 168 34 45 chrX 30195943 30196122 -132403808 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 357 209 0 70 chrX 30196136 30196251 -132403679 + (CATATA)n Simple_repeat Simple_repeat 4 110 0 1260 219 4 4 chrX 30197064 30197302 -132402628 - MER8 DNA MER2_type -1 238 1 3243 219 11 2 chrX 30197469 30198109 -132401821 + MER82 DNA MER2_type 1 646 -7 258 246 0 14 chrX 30198876 30198945 -132400985 + (TG)n Simple_repeat Simple_repeat 1 68 0 204 40 0 0 chrX 30198999 30199024 -132400906 + (CA)n Simple_repeat Simple_repeat 2 26 0 1185 209 60 97 chrX 30199080 30199143 -132400787 - MLT1D LTR MaLR -2 503 439 1930 147 0 13 chrX 30199143 30199450 -132400480 - AluSx SINE Alu -9 303 1 1185 209 60 97 chrX 30199450 30199708 -132400222 - MLT1D LTR MaLR -66 439 202 2318 92 3 3 chrX 30199708 30200011 -132399919 - AluSq SINE Alu -10 303 1 1185 209 60 97 chrX 30200011 30200151 -132399779 - MLT1D LTR MaLR -303 202 58 * 1989 238 33 1 chrX 30200138 30200646 -132399284 + MER77 LTR ERV1 7 598 -7 460 226 0 0 chrX 30200650 30200734 -132399196 - MLT1D LTR MaLR -421 84 1 1249 231 218 14 chrX 30201343 30201897 -132398033 - L1M4 LINE L1 -1122 5024 4358 21 82 0 0 chrX 30201900 30201949 -132397981 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chrX 30202206 30202242 -132397688 + AT_rich Low_complexity Low_complexity 1 36 0 305 197 40 0 chrX 30203014 30203090 -132396840 - MER116 DNA Mariner 0 80 2 23 86 0 0 chrX 30203256 30203314 -132396616 + AT_rich Low_complexity Low_complexity 1 58 0 1531 138 51 47 chrX 30203343 30203639 -132396291 - AluSx SINE Alu -15 297 1 1789 204 9 0 chrX 30203788 30204126 -132395804 + MLT1A1 LTR MaLR 1 341 -24 23 0 0 0 chrX 30204141 30204164 -132395766 + AT_rich Low_complexity Low_complexity 1 23 0 218 264 0 0 chrX 30204502 30204555 -132395375 + (CAT)n Simple_repeat Simple_repeat 2 54 0 14037 128 20 6 chrX 30205237 30207416 -132392514 - Tigger1 DNA MER2_type 0 2418 210 252 278 119 57 chrX 30208558 30208734 -132391196 - MER117 DNA MER1_type -6 191 5 21 36 0 0 chrX 30208952 30208980 -132390950 + AT_rich Low_complexity Low_complexity 1 28 0 726 277 114 7 chrX 30209011 30209282 -132390648 - LTR16C LTR ERVL 0 491 192 330 339 68 41 chrX 30211474 30211769 -132388161 - L2 LINE L2 -463 2851 2549 263 345 26 0 chrX 30212707 30212823 -132387107 + MIR SINE MIR 96 214 -48 2040 109 22 0 chrX 30213078 30213388 -132386542 - AluSg SINE Alu 0 316 1 334 384 24 6 chrX 30213617 30213781 -132386149 + MIR3 SINE MIR 39 205 -3 2075 290 49 10 chrX 30214028 30214820 -132385110 + L1ME3A LINE L1 5348 6170 0 270 167 0 0 chrX 30214935 30214995 -132384935 + (TA)n Simple_repeat Simple_repeat 2 61 0 180 368 15 15 chrX 30215179 30215247 -132384683 - MIR3 SINE MIR -9 199 132 282 217 193 0 chrX 30215918 30216001 -132383929 + L2 LINE L2 3173 3271 -1 883 253 125 16 chrX 30219315 30219620 -132380310 - MER58B DNA MER1_type -2 339 2 204 276 79 13 chrX 30219704 30219780 -132380150 - L3 LINE CR1 -2 1575 1495 779 305 30 121 chrX 30219890 30220846 -132379084 - L3 LINE CR1 -280 1297 429 222 37 0 0 chrX 30221145 30221172 -132378758 + (TG)n Simple_repeat Simple_repeat 1 27 0 324 0 0 0 chrX 30223353 30223389 -132376541 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 279 0 0 0 chrX 30225405 30225436 -132374494 + (TG)n Simple_repeat Simple_repeat 1 31 0 263 386 0 7 chrX 30225775 30225920 -132374010 + L2 LINE L2 2812 2955 -317 10852 191 26 27 chrX 30225962 30227748 -132372182 - L1MA9 LINE L1 -33 7698 5913 2391 82 0 0 chrX 30227748 30228052 -132371878 + AluSx SINE Alu 1 304 -8 10852 191 26 27 chrX 30228052 30228160 -132371770 - L1MA9 LINE L1 -1818 5913 5806 2907 140 35 29 chrX 30228160 30228195 -132371735 + L1MA9 LINE L1 7160 7193 -526 180 0 0 0 chrX 30228195 30228215 -132371715 + (TA)n Simple_repeat Simple_repeat 1 20 0 2907 140 35 29 chrX 30228215 30228728 -132371202 + L1MA4 LINE L1 7193 7713 -6 10852 191 26 27 chrX 30228728 30230355 -132369575 - L1MA9 LINE L1 -1925 5806 4171 6102 159 31 4 chrX 30230374 30232390 -132367540 + L1PB2 LINE L1 4086 6151 0 1745 254 34 30 chrX 30232397 30232809 -132367121 - L1MA9 LINE L1 -3405 4160 3744 2227 111 0 7 chrX 30232809 30233115 -132366815 - AluSx SINE Alu -8 304 1 1745 254 34 30 chrX 30233115 30233352 -132366578 - L1MA9 LINE L1 -3821 3744 3510 905 136 0 8 chrX 30233355 30233487 -132366443 - FLAM_C SINE Alu -12 131 1 1098 262 95 40 chrX 30233489 30234142 -132365788 - L1MA9 LINE L1 -4026 3539 2851 380 268 58 36 chrX 30234437 30234575 -132365355 - MIR SINE MIR -61 201 61 219 413 22 0 chrX 30234616 30234708 -132365222 + L2 LINE L2 3136 3229 -43 193 397 0 0 chrX 30234741 30234814 -132365116 - L2 LINE L2 -27 3245 3173 1314 266 32 5 chrX 30234851 30235260 -132364670 + Charlie4a DNA MER1_type 14 433 -75 637 300 74 4 chrX 30235391 30235634 -132364296 + MIR SINE MIR 3 262 0 1877 231 70 58 chrX 30235677 30236298 -132363632 + L1ME1 LINE L1 5472 6103 -63 204 40 0 0 chrX 30236298 30236323 -132363607 + (TG)n Simple_repeat Simple_repeat 2 26 0 1877 231 70 58 chrX 30236323 30236386 -132363544 + L1ME1 LINE L1 6103 6164 -2 23 33 0 0 chrX 30237000 30237030 -132362900 + AT_rich Low_complexity Low_complexity 1 30 0 515 357 98 32 chrX 30237116 30237688 -132362242 + L2 LINE L2 2641 3253 -60 227 200 0 0 chrX 30237745 30237790 -132362140 + L2 LINE L2 3269 3313 0 308 352 208 0 chrX 30238069 30238194 -132361736 - L2 LINE L2 0 3272 3122 1107 335 88 44 chrX 30238328 30239288 -132360642 - L2 LINE L2 -353 2961 1960 343 292 196 3 chrX 30239293 30239666 -132360264 - L1MEc LINE L1 -3542 2673 2229 254 234 65 19 chrX 30239717 30239824 -132360106 - L1MEc LINE L1 -4436 1960 1849 2055 159 35 43 chrX 30239951 30240501 -132359429 + MLT2A2 LTR ERVL 1 554 0 294 233 27 0 chrX 30240502 30240575 -132359355 - L1MEc LINE L1 -4708 1688 1614 * 1377 192 95 6 chrX 30240559 30240876 -132359054 - L1MD2 LINE L1 -4 6355 6011 1393 264 10 12 chrX 30240889 30241397 -132358533 + L1 LINE L1 3067 3573 -2573 13412 199 15 24 chrX 30241412 30242251 -132357679 + L1PA13 LINE L1 1 846 -5951 252 0 0 0 chrX 30242251 30242279 -132357651 + (TG)n Simple_repeat Simple_repeat 2 29 0 13412 199 15 24 chrX 30242279 30244737 -132355193 + L1PA13 LINE L1 846 3260 -3537 2149 122 3 0 chrX 30244737 30245041 -132354889 + AluSq SINE Alu 1 305 -8 13412 199 15 24 chrX 30245041 30246228 -132353702 + L1PA13 LINE L1 3260 4455 -2342 713 183 0 0 chrX 30246235 30246366 -132353564 - L1P LINE L1 -1804 4342 4212 446 240 41 0 chrX 30246360 30246481 -132353449 - L1M4 LINE L1 -3424 2722 2597 * 1300 186 0 4 chrX 30246482 30246751 -132353179 + L1 LINE L1 4580 4847 -1299 5958 111 9 7 chrX 30246757 30247864 -132352066 + L1PA12 LINE L1 5044 6153 -15 2435 62 0 13 chrX 30248194 30248501 -132351429 - AluY SINE Alu -8 303 1 2755 16 0 0 chrX 30249164 30249474 -132350456 - AluYb8 SINE Alu -8 310 1 641 278 78 36 chrX 30249980 30250066 -132349864 + L1MDa LINE L1 1849 1930 -4610 1896 9 0 0 chrX 30250066 30250283 -132349647 + L1PA2 LINE L1 5935 6151 -4 641 278 78 36 chrX 30250283 30250556 -132349374 + L1MDa LINE L1 1930 2223 -4317 * 3219 166 8 0 chrX 30250541 30251132 -132348798 + L1PA13 LINE L1 4636 5231 -1566 1708 188 11 6 chrX 30251131 30251482 -132348448 - L1P LINE L1 -1430 4716 4364 * 6042 95 21 4 chrX 30251480 30252376 -132347554 - L1PA12 LINE L1 0 6168 5260 249 294 83 78 chrX 30253726 30253906 -132346024 - MIR3 SINE MIR -5 203 23 520 243 36 18 chrX 30254085 30254248 -132345682 + MIR SINE MIR 99 262 0 5919 118 31 0 chrX 30254716 30255739 -132344191 - L1PB1 LINE L1 -3 6864 5816 5110 143 26 6 chrX 30255749 30256598 -132343332 - L1PB1 LINE L1 -4914 1949 1084 5643 148 7 60 chrX 30257303 30258395 -132341535 - L1MC1 LINE L1 -1 6332 5299 979 163 42 0 chrX 30258419 30258609 -132341321 - L1MA4 LINE L1 -15 6285 6088 261 321 151 0 chrX 30259127 30259286 -132340644 - L2 LINE L2 -15 3298 3116 932 9 9 0 chrX 30260014 30260129 -132339801 - L1PA5 LINE L1 -697 5457 5342 5675 48 1 0 chrX 30260129 30260819 -132339111 + L1PA5 LINE L1 5458 6151 -3 31 26 0 0 chrX 30261654 30261692 -132338238 + AT_rich Low_complexity Low_complexity 1 38 0 2850 201 13 18 chrX 30261794 30262303 -132337627 + MLT2B3 LTR ERVL 1 508 -46 603 117 0 0 chrX 30262303 30262397 -132337533 + (TCTG)n Simple_repeat Simple_repeat 3 96 0 2850 201 13 18 chrX 30262397 30262444 -132337486 + MLT2B3 LTR ERVL 508 554 0 28 61 0 0 chrX 30263235 30263284 -132336646 + AT_rich Low_complexity Low_complexity 1 49 0 308 299 36 44 chrX 30263596 30263733 -132336197 + MER5A DNA MER1_type 24 159 -30 * 394 329 32 19 chrX 30263611 30263769 -132336161 - MER5A DNA MER1_type -26 163 4 875 251 5 14 chrX 30263953 30264172 -132335758 + MER20 DNA MER1_type 3 219 0 2167 114 0 0 chrX 30264208 30264497 -132335433 - AluSx SINE Alu -23 289 1 297 175 0 75 chrX 30266104 30266184 -132333746 + MIR SINE MIR 123 196 -66 274 281 107 16 chrX 30266901 30267022 -132332908 + MIR SINE MIR 58 189 -73 185 222 28 0 chrX 30267115 30267151 -132332779 + MIR SINE MIR 219 255 -7 256 361 0 0 chrX 30267194 30267255 -132332675 + L3 LINE CR1 581 641 -936 1760 183 0 10 chrX 30268748 30269060 -132330870 - AluJo SINE Alu -1 311 3 200 86 29 0 chrX 30269419 30269454 -132330476 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 220 327 0 0 chrX 30269472 30269527 -132330403 + (CATG)n Simple_repeat Simple_repeat 4 58 0 186 48 24 48 chrX 30269547 30269589 -132330341 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 243 299 28 37 chrX 30270599 30270706 -132329224 - 7SK RNA RNA -85 108 3 864 329 165 29 chrX 30274270 30274927 -132325003 - L2 LINE L2 0 3313 2555 867 220 22 0 chrX 30274940 30275122 -132324808 + MER5A DNA MER1_type 4 189 0 225 345 48 90 chrX 30277076 30277221 -132322709 - MIR SINE MIR -122 140 2 9612 167 23 32 chrX 30277668 30277946 -132321984 + L1PA15 LINE L1 3317 3596 -2569 2103 81 53 0 chrX 30277946 30278229 -132321701 - AluY SINE Alu -13 298 1 9612 167 23 32 chrX 30278229 30280802 -132319128 + L1PA15 LINE L1 3596 6140 -25 225 0 0 0 chrX 30280802 30280827 -132319103 + (TA)n Simple_repeat Simple_repeat 1 25 0 5162 64 8 0 chrX 30280832 30281502 -132318428 - L1PA7 LINE L1 -3 6151 5477 21 0 0 0 chrX 30282945 30282966 -132316964 + AT_rich Low_complexity Low_complexity 1 21 0 236 264 44 11 chrX 30283045 30283136 -132316794 + MLT1J2 LTR MaLR 68 161 -289 477 283 86 30 chrX 30283343 30283576 -132316354 + L2 LINE L2 3047 3292 -21 254 246 0 18 chrX 30283937 30284047 -132315883 + (TATG)n Simple_repeat Simple_repeat 1 108 0 223 159 14 72 chrX 30286062 30286131 -132313799 + GA-rich Low_complexity Low_complexity 2 66 0 367 317 87 12 chrX 30286818 30286979 -132312951 - MIR SINE MIR -4 258 86 402 333 55 6 chrX 30287010 30287175 -132312755 - MIR SINE MIR -4 258 86 233 245 21 11 chrX 30287509 30287603 -132312327 - L1MC4 LINE L1 -1334 6708 6614 226 326 0 0 chrX 30287780 30287869 -132312061 - L1MC4 LINE L1 -1340 6702 6614 * 261 204 0 82 chrX 30287801 30287899 -132312031 + L1MC4 LINE L1 6614 6703 -1339 * 268 192 0 0 chrX 30287871 30287923 -132312007 - L1MC4 LINE L1 -1339 6703 6652 351 206 53 15 chrX 30288879 30289010 -132310920 + (TA)n Simple_repeat Simple_repeat 2 137 0 5247 128 47 11 chrX 30289276 30290206 -132309724 - L1PA13 LINE L1 0 6163 5199 8710 162 17 161 chrX 30290207 30291223 -132308707 - L1PA13 LINE L1 -1837 4309 3148 3093 35 0 68 chrX 30291223 30291648 -132308282 + L1PA5 LINE L1 5751 6149 -5 8710 162 17 161 chrX 30291648 30293442 -132306488 - L1PA13 LINE L1 -2998 3148 1904 405 326 79 11 chrX 30295029 30295219 -132304711 + LTR16A LTR ERVL 88 290 -160 2162 51 0 0 chrX 30297393 30297669 -132302261 - AluY SINE Alu 0 311 30 2475 194 16 27 chrX 30298980 30299879 -132300051 + L1M3 LINE L1 4891 5782 -401 354 210 0 0 chrX 30299898 30299966 -132299964 - Tigger2 DNA MER2_type -10 2708 2650 788 362 57 26 chrX 30299977 30300632 -132299298 + L1M2 LINE L1 1 1952 -5257 384 370 45 8 chrX 30300714 30300957 -132298973 + L1PBb LINE L1 106 357 -5847 1147 301 50 19 chrX 30301079 30301546 -132298384 + L1PBb LINE L1 353 917 -5286 * 12434 215 31 19 chrX 30301527 30306906 -132293024 + L1PB4 LINE L1 686 6207 -6 736 139 70 0 chrX 30306912 30307041 -132292889 - Tigger2 DNA MER2_type -52 2666 2529 198 0 0 0 chrX 30307041 30307063 -132292867 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7161 29 1 0 chrX 30307063 30307903 -132292027 - L1PA3 LINE L1 -18 6137 5297 333 73 118 0 chrX 30307903 30307971 -132291959 - Tigger2 DNA MER2_type -181 2537 2462 3960 156 39 10 chrX 30308031 30308757 -132291173 - Tigger2 DNA MER2_type -1970 748 2 203 182 36 18 chrX 30308757 30308812 -132291118 + (TA)n Simple_repeat Simple_repeat 2 57 0 2250 149 3 3 chrX 30308818 30309207 -132290723 + L1MB3 LINE L1 5787 6175 -8 402 57 0 0 chrX 30309389 30309442 -132290488 + (CA)n Simple_repeat Simple_repeat 2 54 0 25 0 0 0 chrX 30309571 30309596 -132290334 + AT_rich Low_complexity Low_complexity 1 25 0 6088 94 5 3 chrX 30309664 30311449 -132288481 - L1PA13 LINE L1 0 6163 4388 304 307 132 38 chrX 30312844 30313131 -132286799 + MLT1J LTR MaLR 13 326 -185 1014 296 113 27 chrX 30313292 30313411 -132286519 + L1MC4a LINE L1 5260 5367 -2441 2479 65 0 0 chrX 30313411 30313705 -132286225 + AluY SINE Alu 1 294 -17 213 39 0 0 chrX 30313705 30313731 -132286199 + (TA)n Simple_repeat Simple_repeat 2 27 0 1014 296 113 27 chrX 30313731 30314090 -132285840 + L1MC4a LINE L1 5367 5808 -2000 2268 162 50 21 chrX 30314090 30314510 -132285420 + MSTB1 LTR MaLR 1 432 0 1014 296 113 27 chrX 30314510 30314658 -132285272 + L1MC4a LINE L1 5808 5942 -1866 2161 117 47 33 chrX 30315379 30315738 -132284192 - THE1B LTR MaLR 0 364 1 192 77 0 0 chrX 30315793 30315819 -132284111 + (TG)n Simple_repeat Simple_repeat 1 26 0 492 203 136 8 chrX 30315975 30316093 -132283837 + MER5A DNA MER1_type 55 187 -2 285 108 31 15 chrX 30316258 30316323 -132283607 + (TA)n Simple_repeat Simple_repeat 1 66 0 204 97 0 0 chrX 30316646 30316677 -132283253 + (CA)n Simple_repeat Simple_repeat 1 31 0 306 245 158 36 chrX 30317068 30317207 -132282723 - MIR3 SINE MIR -21 187 32 194 299 103 54 chrX 30317320 30317524 -132282406 + L2 LINE L2 2891 3104 -168 2494 60 0 19 chrX 30317579 30317896 -132282034 + AluY SINE Alu 1 311 0 252 0 0 0 chrX 30317899 30317927 -132282003 + (TA)n Simple_repeat Simple_repeat 2 29 0 559 284 0 14 chrX 30318935 30319083 -132280847 + L1M3d LINE L1 423 568 -5735 421 330 28 64 chrX 30319087 30319317 -132280613 + L1M3d LINE L1 597 1086 -5217 325 377 14 27 chrX 30319385 30319531 -132280399 + L1M3d LINE L1 936 1079 -5224 10600 219 42 45 chrX 30319687 30323081 -132276849 + L1MB1 LINE L1 796 4200 -2204 2067 112 7 14 chrX 30323081 30323376 -132276554 + AluSg SINE Alu 1 293 -17 10600 219 42 45 chrX 30323376 30323858 -132276072 + L1MB1 LINE L1 4200 4682 -1722 2278 108 3 0 chrX 30323858 30324164 -132275766 - AluSq SINE Alu -6 307 1 10600 219 42 45 chrX 30324164 30326008 -132273922 + L1MB1 LINE L1 4682 6404 0 22 0 0 0 chrX 30326407 30326429 -132273501 + AT_rich Low_complexity Low_complexity 1 22 0 6683 33 4 0 chrX 30326604 30327417 -132272513 - L1PA4 LINE L1 -1492 4654 3839 7516 30 0 0 chrX 30327417 30328904 -132271026 + L1PA4 LINE L1 4663 6148 -7 1765 216 70 44 chrX 30329737 30330733 -132269197 - MER69 DNA AcHobo 0 2526 1460 413 347 47 0 chrX 30330735 30330928 -132269002 - MER69 DNA AcHobo -2248 278 77 1112 218 29 71 chrX 30331249 30331630 -132268300 + MLT1A1 LTR MaLR 1 365 0 216 175 0 0 chrX 30332811 30332851 -132267079 + (TG)n Simple_repeat Simple_repeat 1 40 0 4893 184 39 63 chrX 30332919 30336357 -132263573 + L1PA14 LINE L1 1 3517 -4082 4893 113 4 1 chrX 30336357 30337072 -132262858 + L1PA14 LINE L1 6866 7599 0 4893 184 39 63 chrX 30337072 30340338 -132259592 + L1PA14 LINE L1 3517 7599 0 9228 196 36 11 chrX 30340339 30342105 -132257825 + L1M1 LINE L1 19 1829 -5736 2642 208 86 57 chrX 30342089 30343122 -132256808 - MSTB-int LTR MaLR -515 1065 1 * 2090 184 39 5 chrX 30343122 30343534 -132256396 - MSTB LTR MaLR 0 426 1 3468 164 11 0 chrX 30343534 30344142 -132255788 + L1PA16 LINE L1 5549 6163 -3 2260 149 26 0 chrX 30344239 30344621 -132255309 + L1PA16 LINE L1 5770 6161 -5 880 246 27 0 chrX 30344625 30344845 -132255085 + L1PA16 LINE L1 5936 6161 -5 489 326 76 42 chrX 30345141 30345524 -132254406 + L1M4 LINE L1 4006 4401 -1745 241 181 85 21 chrX 30345615 30345709 -132254221 + L1MD3 LINE L1 7896 7995 0 3256 197 53 1 chrX 30345915 30346727 -132253203 - L1 LINE L1 -2414 5151 4298 * 9699 141 27 14 chrX 30346719 30347721 -132252209 - L1 LINE L1 -4313 3252 2217 2112 129 0 10 chrX 30347721 30348024 -132251906 - AluSx SINE Alu -12 300 1 9699 141 27 14 chrX 30348024 30348727 -132251203 - L1 LINE L1 -5348 2217 1525 1106 129 68 57 chrX 30549206 30549486 -132050444 - Charlie1 DNA MER1_type -2 2759 2477 509 202 61 9 chrX 30549493 30549607 -132050323 - Charlie1 DNA MER1_type -2641 120 1 347 254 63 72 chrX 30550177 30550354 -132049576 - MIR SINE MIR -62 146 19 23 68 0 0 chrX 30550875 30550919 -132049011 + AT_rich Low_complexity Low_complexity 1 44 0 250 269 15 0 chrX 30551550 30551617 -132048313 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 588 258 79 0 chrX 30553281 30553459 -132046471 + MIR SINE MIR 70 261 -1 22 0 0 0 chrX 30553459 30553481 -132046449 + AT_rich Low_complexity Low_complexity 1 22 0 205 226 0 38 chrX 30553937 30553990 -132045940 + MIR3 SINE MIR 155 205 -3 2162 85 7 3 chrX 30554371 30554695 -132045235 + AluSp SINE Alu 1 325 0 192 214 143 0 chrX 30556314 30556370 -132043560 + MIR SINE MIR 76 139 -69 587 219 0 17 chrX 30556441 30556560 -132043370 + FLAM_A SINE Alu 5 121 -12 1629 138 56 175 chrX 30556874 30557302 -132042628 + MER51A LTR ERV1 1 634 0 1891 171 48 45 chrX 30558328 30558749 -132041181 + MSTB2 LTR MaLR 36 457 0 237 286 0 26 chrX 30559089 30559166 -132040764 - MLT1L LTR MaLR -540 75 1 935 251 5 5 chrX 30559379 30559586 -132040344 - MER58A DNA MER1_type -2 222 16 205 316 63 0 chrX 30559819 30559898 -132040032 - MER5B DNA MER1_type -91 87 4 266 200 33 0 chrX 30559909 30559969 -132039961 - MER5A DNA MER1_type 0 189 128 910 236 52 0 chrX 30560454 30560645 -132039285 - MIR SINE MIR -22 240 40 679 321 123 19 chrX 30561473 30562009 -132037921 + L2 LINE L2 2098 2689 -625 311 113 19 0 chrX 30562438 30562491 -132037439 + (CACCC)n Simple_repeat Simple_repeat 5 58 0 313 276 128 64 chrX 30563408 30563611 -132036319 - L1M2 LINE L1 -5962 887 672 1617 160 28 53 chrX 30563859 30564178 -132035752 + AluJb SINE Alu 1 311 -1 23 0 0 0 chrX 30564238 30564261 -132035669 + AT_rich Low_complexity Low_complexity 1 23 0 2118 124 0 10 chrX 30564829 30565135 -132034795 + AluSq SINE Alu 1 303 -10 1953 239 38 27 chrX 30565525 30566081 -132033849 + MER68 LTR ERV1 1 562 0 1150 238 58 69 chrX 30567687 30568221 -132031709 - L1ME LINE L1 -5198 872 345 22 35 0 0 chrX 30568545 30568574 -132031356 + AT_rich Low_complexity Low_complexity 1 29 0 748 222 167 52 chrX 30568842 30569166 -132030764 - MLT1J2 LTR MaLR -89 361 1 22 0 0 0 chrX 30570139 30570161 -132029769 + AT_rich Low_complexity Low_complexity 1 22 0 1002 247 4 21 chrX 30571346 30571585 -132028345 + MLT1D LTR MaLR 13 247 -258 359 162 0 0 chrX 30571725 30571793 -132028137 + MLT1E2 LTR MaLR 551 618 -8 207 204 0 0 chrX 30571863 30571907 -132028023 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 306 0 0 0 chrX 30571920 30571954 -132027976 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 554 274 123 11 chrX 30572635 30572814 -132027116 + MIR SINE MIR 15 213 -49 22 0 0 0 chrX 30572814 30572836 -132027094 + AT_rich Low_complexity Low_complexity 1 22 0 289 316 12 10 chrX 30574114 30574216 -132025714 + MIR3 SINE MIR 11 113 -135 384 310 7 14 chrX 30574263 30574405 -132025525 + MIR SINE MIR 88 228 -34 574 315 35 11 chrX 30575044 30575304 -132024626 - LTR16B LTR ERVL -75 389 124 21 0 0 0 chrX 30575605 30575626 -132024304 + AT_rich Low_complexity Low_complexity 1 21 0 255 285 102 0 chrX 30576485 30576622 -132023308 - L1MC4 LINE L1 -1 8041 7891 411 179 30 0 chrX 30576721 30576788 -132023142 - MER2 DNA MER2_type 0 345 277 * 512 247 133 19 chrX 30576760 30576918 -132023012 - MER8 DNA MER2_type -60 179 4 430 293 48 52 chrX 30576981 30577210 -132022720 - AluJb SINE Alu -27 275 48 305 133 0 0 chrX 30577310 30577355 -132022575 - AluS SINE Alu -211 92 48 312 27 0 0 chrX 30577359 30577396 -132022534 + (TG)n Simple_repeat Simple_repeat 2 38 0 2657 250 59 32 chrX 30577403 30579180 -132020750 - L1ME2 LINE L1 -10 6154 4331 437 215 70 25 chrX 30579194 30579352 -132020578 - L1ME2 LINE L1 -3276 2870 2706 218 357 161 20 chrX 30580079 30580631 -132019299 - L2 LINE L2 -464 2850 2221 182 303 37 64 chrX 30580645 30580754 -132019176 + L3 LINE CR1 1456 1561 -16 363 199 0 8 chrX 30581333 30581406 -132018524 + MER5B DNA MER1_type 73 153 -36 1848 192 93 50 chrX 30581454 30581938 -132017992 + MLT1D LTR MaLR 1 505 0 207 0 0 0 chrX 30583477 30583500 -132016430 + (T)n Simple_repeat Simple_repeat 1 23 0 228 254 9 55 chrX 30584013 30584123 -132015807 + C-rich Low_complexity Low_complexity 1 105 0 2584 198 60 46 chrX 30584993 30586146 -132013784 + L1MD2 LINE L1 5589 6231 -11 2707 183 13 48 chrX 30586146 30586203 -132013727 + L1MA10 LINE L1 5734 5791 -543 2493 77 44 0 chrX 30586203 30586543 -132013387 + THE1A LTR MaLR 1 355 0 11682 95 4 5 chrX 30586544 30588124 -132011806 + THE1A-int LTR MaLR 2 1580 0 2732 65 14 3 chrX 30588124 30588475 -132011455 + THE1A LTR MaLR 1 355 0 2707 183 13 48 chrX 30588475 30589022 -132010908 + L1MA10 LINE L1 5789 6320 -14 23 54 0 0 chrX 30589429 30589466 -132010464 + AT_rich Low_complexity Low_complexity 1 37 0 46 33 0 0 chrX 30591160 30591220 -132008710 + AT_rich Low_complexity Low_complexity 1 60 0 858 189 24 0 chrX 30591859 30592028 -132007902 - MER5A DNA MER1_type -15 174 2 2616 128 39 36 chrX 30592152 30592620 -132007310 - Tigger3b DNA MER2_type 0 1231 763 931 114 0 0 chrX 30592634 30592757 -132007173 + FLAM_C SINE Alu 1 123 -20 183 62 104 0 chrX 30592760 30592808 -132007122 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 3430 99 92 128 chrX 30592815 30593615 -132006315 - Tigger3b DNA MER2_type -455 776 5 686 305 168 19 chrX 30593704 30594019 -132005911 - L3 LINE CR1 -235 1342 981 246 198 70 70 chrX 30594417 30594503 -132005427 + MER117 DNA MER1_type 95 180 -17 343 48 0 0 chrX 30594575 30594617 -132005313 - MER4E LTR ERV1 -72 694 653 25 0 0 0 chrX 30595177 30595202 -132004728 + AT_rich Low_complexity Low_complexity 1 25 0 1560 154 3 96 chrX 30595400 30595752 -132004178 - AluJb SINE Alu 0 323 1 379 381 30 5 chrX 30598099 30598296 -132001634 + MIR3 SINE MIR 6 207 -1 24 32 0 0 chrX 30599035 30599066 -132000864 + AT_rich Low_complexity Low_complexity 1 31 0 2080 132 3 0 chrX 30600873 30601176 -131998754 - AluSx SINE Alu -8 304 1 202 265 0 20 chrX 30601545 30601594 -131998336 - L3 LINE CR1 -4 1573 1526 397 259 48 78 chrX 30601793 30601959 -131997971 - MIR3 SINE MIR -36 172 12 2264 151 145 29 chrX 30601964 30602196 -131997734 + L1MC1 LINE L1 5170 5374 -959 2032 128 8 68 chrX 30602196 30602563 -131997367 - MER7A DNA MER2_type -2 344 2 2264 151 145 29 chrX 30602563 30603229 -131996701 + L1MC1 LINE L1 5374 6229 -104 344 186 105 23 chrX 30603221 30603307 -131996623 + L1MB5 LINE L1 5998 6090 -84 * 416 177 0 0 chrX 30603364 30603443 -131996487 + L1MB5 LINE L1 6096 6174 0 1200 174 148 23 chrX 30604958 30605263 -131994667 + MER2 DNA MER2_type 1 343 -1 360 275 54 27 chrX 30605641 30605813 -131994117 + MIR SINE MIR 4 175 -62 2401 174 24 5 chrX 30606645 30607070 -131992860 + Tigger2a DNA MER2_type 1 433 -1 3878 108 78 5 chrX 30607314 30607914 -131992016 + LTR9B LTR ERV1 1 644 0 353 281 141 36 chrX 30608393 30608585 -131991345 - MIR SINE MIR -47 215 4 2623 139 116 22 chrX 30608641 30609181 -131990749 + LTR24B LTR ERV1 1 635 0 22 0 0 0 chrX 30609344 30609366 -131990564 + AT_rich Low_complexity Low_complexity 1 22 0 380 198 62 0 chrX 30610959 30611040 -131988890 + MER103 DNA DNA 22 107 -59 286 283 0 0 chrX 30611129 30611189 -131988741 + L3 LINE CR1 1516 1575 -2 254 273 36 0 chrX 30611249 30611304 -131988626 - L3 LINE CR1 -7 1570 1514 24 53 0 0 chrX 30611902 30611940 -131987990 + AT_rich Low_complexity Low_complexity 1 38 0 388 48 32 16 chrX 30612380 30612443 -131987487 + (TTTTA)n Simple_repeat Simple_repeat 1 64 0 39124 37 2 13 chrX 30612443 30618085 -131981845 - L1PA3 LINE L1 -24 6131 555 375 23 0 0 chrX 30618104 30618148 -131981782 + (TG)n Simple_repeat Simple_repeat 2 45 0 187 314 15 117 chrX 30619056 30619123 -131980807 - L2 LINE L2 -1 3271 3223 1421 127 28 0 chrX 30619123 30619335 -131980595 + MER20 DNA MER1_type 2 219 0 187 314 15 117 chrX 30619335 30619404 -131980526 - L2 LINE L2 -49 3223 3149 2316 91 60 28 chrX 30619433 30619786 -131980144 - THE1B LTR MaLR 0 364 1 269 49 0 0 chrX 30620454 30620495 -131979435 - L1MA9 LINE L1 -37 6275 6235 2075 114 0 7 chrX 30620496 30620793 -131979137 - AluSg SINE Alu -15 295 1 582 265 40 30 chrX 30620884 30621084 -131978846 + MIR SINE MIR 19 220 -42 235 321 57 57 chrX 30621974 30622114 -131977816 - MIR SINE MIR -66 196 57 305 181 69 28 chrX 30622155 30622227 -131977703 - L1ME3A LINE L1 -58 6112 6038 473 323 8 0 chrX 30622285 30622412 -131977518 - L2 LINE L2 -6 3266 3139 277 350 119 7 chrX 30622454 30622597 -131977333 - L2 LINE L2 -410 2904 2746 704 212 21 106 chrX 30623068 30623331 -131976599 - L1ME3A LINE L1 -189 5981 5742 1887 197 19 8 chrX 30623331 30623692 -131976238 + MLT1A1 LTR MaLR 1 365 0 704 212 21 106 chrX 30623692 30623711 -131976219 - L1ME3A LINE L1 -428 5742 5723 2757 136 9 9 chrX 30623883 30624309 -131975621 + MSTA LTR MaLR 1 426 -2 9031 171 28 6 chrX 30624311 30625927 -131974003 + MSTA-int LTR MaLR 1 1651 0 2571 103 75 0 chrX 30625927 30626325 -131973605 + MSTA LTR MaLR 1 428 0 679 244 30 36 chrX 30626820 30626988 -131972942 - MIR SINE MIR -62 200 34 486 235 14 52 chrX 30627166 30627354 -131972576 + L1MA10 LINE L1 5988 6333 -1 1377 180 34 8 chrX 30627556 30627597 -131972333 + MLT1F LTR MaLR 269 307 -235 2135 116 0 7 chrX 30627597 30627899 -131972031 + AluSx SINE Alu 1 300 -12 1377 180 34 8 chrX 30627899 30628124 -131971806 + MLT1F LTR MaLR 307 542 0 188 67 33 0 chrX 30628151 30628181 -131971749 + (TA)n Simple_repeat Simple_repeat 2 32 0 2932 184 73 81 chrX 30628183 30629015 -131970915 - L1ME3A LINE L1 -25 6145 5320 23 0 0 0 chrX 30629982 30630005 -131969925 + AT_rich Low_complexity Low_complexity 1 23 0 228 130 259 0 chrX 30631108 30631162 -131968768 - L1ME LINE L1 -294 5827 5760 261 188 0 58 chrX 30631181 30631250 -131968680 + L1ME LINE L1 5769 5833 -288 235 234 11 85 chrX 30633167 30633261 -131966669 - MIR SINE MIR -71 191 105 259 354 79 24 chrX 30633792 30633919 -131966011 + L2 LINE L2 3121 3254 -18 301 232 87 43 chrX 30634153 30634338 -131965592 - L1ME LINE L1 -289 5832 5640 252 59 0 0 chrX 30634671 30634705 -131965225 + (A)n Simple_repeat Simple_repeat 1 34 0 297 306 99 0 chrX 30634729 30634840 -131965090 - L2 LINE L2 -3 3269 3148 235 267 0 17 chrX 30636721 30636781 -131963149 - L2 LINE L2 0 3272 3214 189 0 0 0 chrX 30637157 30637178 -131962752 + (TA)n Simple_repeat Simple_repeat 1 21 0 1204 256 37 16 chrX 30637180 30637555 -131962375 + L1ME LINE L1 878 1260 -5294 1954 187 117 17 chrX 30637588 30638048 -131961882 + L1ME LINE L1 158 663 -5901 1200 217 68 10 chrX 30638050 30638345 -131961585 + MER2 DNA MER2_type 29 340 -5 2361 186 43 24 chrX 30638346 30638935 -131960995 + L1ME LINE L1 474 1051 -4994 973 283 89 20 chrX 30638941 30639479 -131960451 + L1ME LINE L1 1270 1844 -4720 8707 155 27 33 chrX 30639484 30641116 -131958814 + L1MA8 LINE L1 3676 5319 -972 2091 120 0 33 chrX 30641116 30641417 -131958513 + AluSx SINE Alu 1 291 -21 8707 155 27 33 chrX 30641417 30641730 -131958200 + L1MA8 LINE L1 5319 5632 -659 6562 173 69 62 chrX 30641730 30643364 -131956566 - MER52A LTR ERV1 0 1755 1 2618 214 21 74 chrX 30643364 30643742 -131956188 + L1MA8 LINE L1 5629 5965 -326 2673 100 3 16 chrX 30643742 30644111 -131955819 - THE1B LTR MaLR 0 364 1 2618 214 21 74 chrX 30644111 30644340 -131955590 + L1MA8 LINE L1 5965 6204 -87 23 0 0 0 chrX 30644378 30644401 -131955529 + AT_rich Low_complexity Low_complexity 1 23 0 1777 287 61 26 chrX 30644401 30645750 -131954180 + L1ME LINE L1 1882 3235 -3329 507 314 138 45 chrX 30645759 30646135 -131953795 - MER68 LTR ERV1 -7 555 145 512 209 64 21 chrX 30646346 30646533 -131953397 + L1ME LINE L1 3257 3451 -3113 266 222 118 69 chrX 30647143 30647287 -131952643 - LTR40b LTR ERVL -42 420 270 * 678 329 91 35 chrX 30647171 30647655 -131952275 - REP3 LTR ERV -44 518 8 2099 68 68 4 chrX 30648266 30648546 -131951384 + LTR3 LTR ERVK 1 298 -134 1163 155 8 0 chrX 30648647 30652564 -131947366 + ALR/Alpha Satellite centromeric 1 3946 -28 9680 195 69 38 chrX 30652843 30655771 -131944159 + L1MC1 LINE L1 2581 5607 -726 539 208 10 0 chrX 30655772 30655868 -131944062 - Tigger7 DNA MER2_type -1 2586 2490 * 1533 187 23 8 chrX 30655867 30656129 -131943801 - Tigger7 DNA MER2_type -2220 267 2 3944 163 31 19 chrX 30656137 30656841 -131943089 + L1MC1 LINE L1 5621 6333 0 290 304 16 24 chrX 30656901 30657026 -131942904 + L2 LINE L2 2278 2401 -913 779 274 63 116 chrX 30657039 30657372 -131942558 + L2 LINE L2 2817 3113 -200 198 71 0 0 chrX 30657372 30657400 -131942530 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 779 274 63 116 chrX 30657400 30657591 -131942339 + L2 LINE L2 3113 3313 0 222 286 41 68 chrX 30658197 30658344 -131941586 + MER5A DNA MER1_type 46 188 -1 1859 161 7 23 chrX 30658354 30658664 -131941266 + AluJb SINE Alu 3 307 -5 2608 48 0 19 chrX 30658878 30659193 -131940737 + AluSg SINE Alu 1 309 -1 640 231 131 0 chrX 30659320 30659480 -131940450 + MER5A DNA MER1_type 9 189 0 5957 115 61 15 chrX 30659683 30660780 -131939150 - Tigger3b DNA MER2_type 0 1231 2 243 224 35 0 chrX 30660797 30660855 -131939075 - MIR SINE MIR -94 168 109 1784 119 4 15 chrX 30661580 30661841 -131938089 - AluSx SINE Alu -15 297 40 2483 189 159 105 chrX 30663762 30664315 -131935615 - L1MC3 LINE L1 -1 7784 7263 402 213 43 21 chrX 30664315 30664409 -131935521 - MLT1F1 LTR MaLR -436 131 36 2483 189 159 105 chrX 30664409 30664785 -131935145 - L1MC3 LINE L1 -522 7263 6706 352 310 148 20 chrX 30665071 30665274 -131934656 - MIR SINE MIR -3 259 31 429 100 0 0 chrX 30665297 30665357 -131934573 - L1MA9 LINE L1 -6 6306 6247 211 317 233 8 chrX 30665369 30665489 -131934441 + L2 LINE L2 3163 3309 -4 1371 246 162 58 chrX 30666080 30667138 -131932792 - L2 LINE L2 -1 3312 2136 292 222 16 0 chrX 30668729 30668792 -131931138 - L2 LINE L2 -2 3311 3248 261 330 76 8 chrX 30669043 30669161 -131930769 + MIR SINE MIR 47 172 -90 2328 72 10 0 chrX 30670911 30671204 -131928726 - AluY SINE Alu -15 296 1 184 305 0 95 chrX 30671427 30671522 -131928408 - L2 LINE L2 -50 3222 3137 1600 165 26 36 chrX 30671835 30672144 -131927786 - AluJb SINE Alu -6 306 1 501 17 0 0 chrX 30672201 30672259 -131927671 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 197 99 14 chrX 30672437 30672508 -131927422 - L1ME3 LINE L1 -80 6082 6006 281 24 49 0 chrX 30672593 30672634 -131927296 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2463 57 0 0 chrX 30672636 30672918 -131927012 - AluY SINE Alu -29 282 1 11889 127 5 40 chrX 30672919 30675349 -131924581 - HERVH LTR ERV1 -5052 2661 1 2151 86 36 9 chrX 30675349 30675738 -131924192 - LTR7 LTR ERV1 0 450 1 18689 144 48 15 chrX 30676469 30679543 -131920387 - ERVL LTR ERVL 0 5764 2587 753 138 8 8 chrX 30679543 30679666 -131920264 + LTR56 LTR ERV1 9 131 -314 264 216 60 100 chrX 30679997 30680170 -131919760 + LTR26E LTR ERV1 365 525 0 344 272 18 66 chrX 30680624 30680872 -131919058 + LTR56-int LTR ERV1 539 1393 -6363 1032 346 41 16 chrX 30681085 30681640 -131918290 + LTR56-int LTR ERV1 958 1526 -5596 330 93 19 56 chrX 30682534 30682588 -131917342 + tRNA-Met-e tRNA tRNA 1 52 -23 1918 353 39 45 chrX 30682646 30684440 -131915490 + LTR56-int LTR ERV1 2472 4255 -2867 723 124 8 10 chrX 30684697 30684949 -131914981 + AluSx SINE Alu 6 301 -9 489 292 86 39 chrX 30685217 30685577 -131914353 + LTR56-int LTR ERV1 5453 5829 -1927 2142 328 52 48 chrX 30685597 30687215 -131912715 + LTR56-int LTR ERV1 5246 6869 -253 1318 96 45 0 chrX 30687940 30688139 -131911791 + LTR56 LTR ERV1 128 335 -110 3626 101 17 20 chrX 30688139 30688820 -131911110 + L1M1 LINE L1 5111 5787 -517 1557 247 49 70 chrX 30688820 30689432 -131910498 + LTR9 LTR ERV1 1 599 -13 3202 94 18 0 chrX 30689432 30689869 -131910061 + L1MA1 LINE L1 5858 6302 0 7588 161 8 16 chrX 30690022 30691267 -131908663 - ERVL LTR ERVL -3166 2598 1364 1630 171 153 70 chrX 30691267 30691797 -131908133 + LTR49 LTR ERV1 1 600 -22 3330 194 58 33 chrX 30691818 30692490 -131907440 - ERVL LTR ERVL -4397 1367 679 258 152 22 0 chrX 30692492 30692538 -131907392 - ERVL LTR ERVL -5064 700 654 839 69 0 0 chrX 30692540 30692642 -131907288 + AluSc SINE Alu 196 297 -12 1800 163 116 34 chrX 30692831 30693292 -131906638 + LTR10A LTR ERV1 1 546 -63 911 209 61 36 chrX 30693302 30693580 -131906350 + LTR10A-int LTR ERV1 1 285 -6364 3904 200 24 21 chrX 30693653 30694550 -131905380 + LTR10A-int LTR ERV1 546 2587 -4888 12269 133 34 38 chrX 30694568 30698792 -131901138 + HERV17 LTR ERV1 694 7784 -1 2137 174 104 45 chrX 30698797 30699314 -131900616 + LTR10A LTR ERV1 1 548 -61 381 259 101 32 chrX 30699600 30699789 -131900141 + L1MC5 LINE L1 7673 7874 -87 1742 156 4 0 chrX 30700074 30700343 -131899587 + L1M1 LINE L1 1638 1907 -5658 4426 121 26 3 chrX 30700353 30701016 -131898914 + L1MA2 LINE L1 5627 6304 0 192 267 0 0 chrX 30701057 30701102 -131898828 - L3b LINE CR1 -140 1443 1399 809 144 65 26 chrX 30701371 30701524 -131898406 - THE1C LTR MaLR -216 159 1 6645 154 13 14 chrX 30701528 30702630 -131897300 - THE1C-int LTR MaLR -4 1576 477 822 114 0 0 chrX 30702622 30702736 -131897194 - THE1C-int LTR MaLR -1363 217 104 * 230 256 51 77 chrX 30703156 30703286 -131896644 + MIR SINE MIR 53 185 -64 2066 109 44 3 chrX 30703378 30703671 -131896259 - AluSq SINE Alu -8 305 1 184 305 0 95 chrX 30703894 30703989 -131895941 - L2 LINE L2 -50 3222 3137 1600 165 26 36 chrX 30704302 30704611 -131895319 - AluJb SINE Alu -6 306 1 474 18 0 0 chrX 30704668 30704723 -131895207 + (TG)n Simple_repeat Simple_repeat 2 56 0 231 319 56 44 chrX 30704906 30705066 -131894864 - MLT1J2 LTR MaLR -3 447 286 415 271 79 13 chrX 30705122 30705302 -131894628 - MLT1J2 LTR MaLR -257 189 1 226 270 166 58 chrX 30705867 30706108 -131893822 + HAL1 LINE L1 812 1078 -1429 333 308 116 70 chrX 30706155 30706596 -131893334 + L1M2 LINE L1 756 1216 -5633 370 101 29 0 chrX 30707397 30707466 -131892464 + (GGGTG)n Simple_repeat Simple_repeat 3 73 0 617 320 116 22 chrX 30707961 30708496 -131891434 - L2 LINE L2 -625 2689 2105 2123 152 33 33 chrX 30709057 30709419 -131890511 - THE1B LTR MaLR 0 364 3 1032 205 35 0 chrX 30709811 30710011 -131889919 + MIR SINE MIR 40 246 -16 1940 128 10 0 chrX 30710051 30710341 -131889589 - L1PA13 LINE L1 -7 6156 5864 1313 204 26 71 chrX 30710691 30711073 -131888857 - LTR8 LTR ERV1 -151 540 176 279 210 0 0 chrX 30711073 30711135 -131888795 + MLT1A2-int LTR MaLR 1674 1735 0 446 206 22 11 chrX 30711135 30711227 -131888703 + MLT1A2 LTR MaLR 1 93 -281 * 2292 189 20 0 chrX 30711225 30711621 -131888309 - LTR57 LTR ERVL -7 404 1 929 203 65 76 chrX 30711621 30711912 -131888018 + MLT1A2 LTR MaLR 80 367 -7 402 69 0 0 chrX 30712078 30712136 -131887794 + (CA)n Simple_repeat Simple_repeat 1 58 0 775 265 21 0 chrX 30712179 30712368 -131887562 + MER58A DNA MER1_type 1 193 -31 231 286 0 29 chrX 30712563 30712633 -131887297 + MLT1L LTR MaLR 1 68 -547 1203 151 131 4 chrX 30713142 30713374 -131886556 + L1MA9 LINE L1 6014 6284 -28 285 29 0 0 chrX 30713374 30713408 -131886522 + (TA)n Simple_repeat Simple_repeat 2 35 0 1203 151 131 4 chrX 30713408 30713434 -131886496 + L1MA9 LINE L1 6284 6305 -7 396 340 92 5 chrX 30713477 30713662 -131886268 - MIR SINE MIR -4 258 58 228 35 0 0 chrX 30713823 30713852 -131886078 + (TG)n Simple_repeat Simple_repeat 2 30 0 201 182 0 23 chrX 30713863 30713907 -131886023 - MIR3 SINE MIR -156 52 10 343 267 13 0 chrX 30714279 30714354 -131885576 - ERVL LTR ERVL -2282 3482 3407 246 241 0 0 chrX 30714357 30714415 -131885515 + L1M4 LINE L1 714 771 -5771 244 96 58 0 chrX 30714422 30714474 -131885456 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1498 130 42 13 chrX 30714494 30714732 -131885198 - AluSq SINE Alu -32 281 37 2846 238 39 41 chrX 30714732 30714789 -131885141 + L1M4 LINE L1 766 822 -5824 180 0 0 0 chrX 30714789 30714809 -131885121 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 2846 238 39 41 chrX 30714809 30714986 -131884944 + L1M4 LINE L1 822 998 -5648 1141 236 26 92 chrX 30714986 30715376 -131884554 - MLT1A1 LTR MaLR -1 364 1 2846 238 39 41 chrX 30715376 30716195 -131883735 + L1M4 LINE L1 998 1819 -4827 2095 185 75 5 chrX 30716195 30716595 -131883335 - MSTA LTR MaLR 0 428 1 4820 173 40 16 chrX 30716595 30717485 -131882445 - MSTA-int LTR MaLR 0 1651 740 569 301 24 10 chrX 30717530 30717736 -131882194 + L1M4 LINE L1 1815 2023 -4623 386 273 81 12 chrX 30718478 30718639 -131881291 - MLT1J2 LTR MaLR -278 172 1 320 317 66 42 chrX 30719294 30719461 -131880469 + HAL1 LINE L1 921 1091 -1416 335 267 217 65 chrX 30719488 30719825 -131880105 + L1M2 LINE L1 920 1307 -5542 364 108 54 0 chrX 30720709 30720783 -131879147 + (GGGTG)n Simple_repeat Simple_repeat 1 78 0 2188 85 7 0 chrX 30720863 30721172 -131878758 + AluSp SINE Alu 2 312 0 520 321 120 23 chrX 30721512 30722044 -131877886 - L2 LINE L2 -626 2688 2105 2150 152 42 25 chrX 30722606 30722962 -131876968 - THE1B LTR MaLR 0 364 3 929 220 27 0 chrX 30723353 30723539 -131876391 + MIR SINE MIR 40 230 -32 1893 140 10 0 chrX 30723593 30723886 -131876044 - L1PA13 LINE L1 -7 6156 5861 522 226 26 0 chrX 30724461 30724576 -131875354 + MER5B DNA MER1_type 2 119 -59 566 241 154 12 chrX 30724605 30724767 -131875163 + MER5A DNA MER1_type 4 188 -1 293 231 0 15 chrX 30724778 30724843 -131875087 - MER5B DNA MER1_type -3 175 112 548 243 14 27 chrX 30724985 30725133 -131874797 - MER58B DNA MER1_type 0 341 196 967 228 18 18 chrX 30725388 30725612 -131874318 + MER58A DNA MER1_type 1 224 0 399 265 124 105 chrX 30726431 30726737 -131873193 - L2 LINE L2 -3 3269 2958 183 283 176 31 chrX 30726871 30727030 -131872900 + L2 LINE L2 1867 2048 -1266 189 0 0 0 chrX 30727151 30727172 -131872758 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 291 54 0 0 chrX 30727171 30727208 -131872722 + (TG)n Simple_repeat Simple_repeat 2 38 0 318 271 119 17 chrX 30727520 30727638 -131872292 - LTR67 LTR ERVL 0 557 428 232 119 48 24 chrX 30727691 30727733 -131872197 - LTR67 LTR ERVL -494 63 21 652 223 193 17 chrX 30727904 30728142 -131871788 + LTR16A1 LTR ERVL 177 456 -1 206 375 12 12 chrX 30728215 30728295 -131871635 + L2 LINE L2 3102 3181 -91 196 333 11 67 chrX 30728911 30729001 -131870929 - L2 LINE L2 -19 3253 3169 1095 213 77 0 chrX 30729493 30729700 -131870230 - MER58A DNA MER1_type -1 223 1 2362 179 12 2 chrX 30729904 30730313 -131869617 + MSTB LTR MaLR 1 413 -13 896 295 62 3 chrX 30730316 30730717 -131869213 - LTR16C LTR ERVL -27 464 3 846 280 101 67 chrX 30732089 30732525 -131867405 + LTR16B LTR ERVL 14 464 0 875 279 58 79 chrX 30733492 30733835 -131866095 + LTR16C LTR ERVL 85 419 -72 1424 225 41 41 chrX 30733835 30734200 -131865730 + MLT1A1 LTR MaLR 1 365 0 875 279 58 79 chrX 30734200 30734272 -131865658 + LTR16C LTR ERVL 419 491 0 1791 176 0 7 chrX 30735073 30735375 -131864555 - AluJb SINE Alu -12 300 1 1767 210 29 51 chrX 30735929 30736415 -131863515 + L1MC4 LINE L1 7337 7811 -231 799 226 0 46 chrX 30736415 30736610 -131863320 - AluJo SINE Alu 0 312 127 27 62 0 0 chrX 30736917 30736965 -131862965 + AT_rich Low_complexity Low_complexity 1 48 0 27 81 0 0 chrX 30737098 30737160 -131862770 + AT_rich Low_complexity Low_complexity 1 62 0 265 300 83 25 chrX 30737214 30737334 -131862596 + MIR SINE MIR 16 142 -66 567 43 0 0 chrX 30738485 30738555 -131861375 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 2035 108 14 14 chrX 30738555 30738843 -131861087 - AluSx SINE Alu -24 288 1 2156 284 83 19 chrX 30738992 30739830 -131860100 + HAL1 LINE L1 42 933 -1574 30936 118 10 68 chrX 30739883 30745394 -131854536 - L1P LINE L1 -948 5198 9 800 236 6 6 chrX 30745506 30745680 -131854250 + MER5B DNA MER1_type 5 178 0 509 265 127 0 chrX 30745691 30745848 -131854082 + MER5A DNA MER1_type 4 183 -6 207 214 0 0 chrX 30746245 30746287 -131853643 + MIR SINE MIR 216 257 -5 372 322 35 70 chrX 30747181 30747467 -131852463 + LTR16A1 LTR ERVL 182 457 0 240 309 99 25 chrX 30748835 30748916 -131851014 + MER5A DNA MER1_type 37 123 -66 231 325 0 12 chrX 30748932 30749012 -131850918 + MLT1K LTR MaLR 186 264 -324 340 298 39 10 chrX 30749022 30749126 -131850804 + L2 LINE L2 3147 3253 -19 30 0 0 0 chrX 30749390 30749420 -131850510 + AT_rich Low_complexity Low_complexity 1 30 0 209 333 13 13 chrX 30749450 30749528 -131850402 - MIR SINE MIR -126 136 59 386 256 311 11 chrX 30750031 30750211 -131849719 + MLT1K LTR MaLR 17 250 -338 1295 93 52 0 chrX 30750259 30750453 -131849477 - L1PA13 LINE L1 -8 6155 5952 804 295 26 57 chrX 30751093 30751517 -131848413 - LTR67 LTR ERVL -33 524 114 1405 223 54 5 chrX 30751594 30751962 -131847968 - L1 LINE L1 -1052 5094 4709 414 250 0 0 chrX 30751961 30752057 -131847873 - L1PA13 LINE L1 -5930 857 762 * 3269 191 10 5 chrX 30752059 30752661 -131847269 - L1PA13 LINE L1 -6077 710 106 219 114 0 0 chrX 30753954 30753989 -131845941 + (TG)n Simple_repeat Simple_repeat 2 36 0 1899 162 0 7 chrX 30754940 30755242 -131844688 - AluJb SINE Alu -12 300 1 7067 32 8 1 chrX 30758674 30759551 -131840379 + L1PA5 LINE L1 5285 6167 0 1801 252 22 8 chrX 30759909 30760639 -131839291 - L1ME LINE L1 -371 5795 5055 1885 251 58 8 chrX 30760714 30761456 -131838474 - L1ME LINE L1 -1203 4943 4165 270 239 36 126 chrX 30761762 30761929 -131838001 + MIR SINE MIR 108 259 -3 317 283 0 10 chrX 30762406 30762505 -131837425 + L1M4 LINE L1 5227 5324 -822 2544 203 80 51 chrX 30762517 30763016 -131836914 + L1MD3 LINE L1 6564 7047 -948 319 189 232 0 chrX 30763016 30763111 -131836819 + MLT1F1 LTR MaLR 9 125 -442 2544 203 80 51 chrX 30763111 30763691 -131836239 + L1MD3 LINE L1 7047 7994 -1 204 336 66 33 chrX 30763765 30763887 -131836043 + MER5A DNA MER1_type 63 188 -1 1958 165 67 5 chrX 30764721 30765126 -131834804 + MLT2C2 LTR ERVL 1 362 -35 468 51 0 0 chrX 30765215 30765274 -131834656 + (CA)n Simple_repeat Simple_repeat 2 60 0 268 337 0 11 chrX 30765515 30765604 -131834326 + MER5B DNA MER1_type 13 100 -78 206 314 35 12 chrX 30765668 30765754 -131834176 - MIR3 SINE MIR -36 172 85 2265 95 0 22 chrX 30766496 30766812 -131833118 + AluSg1 SINE Alu 1 309 0 237 159 0 0 chrX 30766871 30766915 -131833015 + (TA)n Simple_repeat Simple_repeat 2 45 0 1773 142 64 24 chrX 30767927 30768257 -131831673 - MER61A LTR ERV1 0 343 1 472 79 0 0 chrX 30768257 30768320 -131831610 - MER61A-int LTR ERV1 0 5217 5155 11527 96 40 18 chrX 30768346 30768543 -131831387 - MER61A-int LTR ERV1 -35 5182 4991 2204 110 0 3 chrX 30768543 30768842 -131831088 + AluSg SINE Alu 1 298 -12 11527 96 40 18 chrX 30768842 30770439 -131829491 - MER61A-int LTR ERV1 -226 4991 3349 1310 202 26 19 chrX 30770439 30770806 -131829124 - L1MEc LINE L1 -2776 3194 2822 2246 157 18 0 chrX 30770806 30771202 -131828728 + MER57A LTR ERV1 1 403 0 1310 202 26 19 chrX 30771202 30771260 -131828670 - L1MEc LINE L1 -3148 2822 2766 417 191 0 38 chrX 30771268 30771405 -131828525 - L1MEc LINE L1 -3840 2165 2007 2099 244 65 35 chrX 30771513 30772621 -131827309 - L1M3d LINE L1 -4518 1373 365 960 284 38 38 chrX 30773022 30773417 -131826513 - L1M3d LINE L1 -5496 395 1 289 209 57 38 chrX 30773421 30773526 -131826404 + MLT1J LTR MaLR 405 511 0 2952 121 0 0 chrX 30774987 30775425 -131824505 + L1P LINE L1 3 440 -5706 19979 31 0 0 chrX 30775425 30778607 -131821323 + L1PA5 LINE L1 2972 6153 -1 417 296 89 11 chrX 30778780 30778966 -131820964 - MIR SINE MIR -8 254 44 301 260 195 0 chrX 30779141 30779264 -131820666 - MLT1K LTR MaLR -9 579 433 21 36 0 0 chrX 30779282 30779310 -131820620 + AT_rich Low_complexity Low_complexity 1 28 0 364 347 14 23 chrX 30779363 30779661 -131820269 - MLT1K LTR MaLR -163 425 43 372 338 91 58 chrX 30779871 30780268 -131819662 + L2 LINE L2 2346 2755 -559 318 228 56 41 chrX 30831624 30831790 -131768140 - MLT1H LTR MaLR 0 595 382 656 219 46 127 chrX 30831843 30832126 -131767804 - MLT1H LTR MaLR -277 272 13 1220 243 48 68 chrX 30832718 30833151 -131766779 + L2 LINE L2 2782 3198 -115 3241 185 29 2 chrX 30833151 30833698 -131766232 - MER68 LTR ERV1 0 562 1 1220 243 48 68 chrX 30833698 30833812 -131766118 + L2 LINE L2 3198 3313 0 406 307 129 21 chrX 30835303 30835443 -131764487 - MIR3 SINE MIR -23 185 31 1089 183 16 0 chrX 30835478 30835664 -131764266 - MER5A DNA MER1_type 0 189 1 1652 245 113 10 chrX 30837167 30837673 -131762257 - MLT1G1 LTR MaLR -5 590 1 1406 263 68 3 chrX 30838062 30838431 -131761499 - LTR16C LTR ERVL 0 491 99 688 246 105 0 chrX 30838903 30839094 -131760836 + MIR SINE MIR 18 228 -34 1977 100 0 21 chrX 30839111 30839448 -131760482 - AluSx SINE Alu 0 331 1 321 336 0 25 chrX 30839464 30839586 -131760344 + MER5A DNA MER1_type 71 189 0 344 283 53 18 chrX 30839878 30839991 -131759939 - L2 LINE L2 -15 3298 3182 890 247 31 45 chrX 30840285 30840572 -131759358 + L2 LINE L2 3027 3309 -4 1300 215 104 17 chrX 30840603 30841007 -131758923 - L1ME3 LINE L1 -1 6161 5723 927 215 0 11 chrX 30841424 30841601 -131758329 + MER5B DNA MER1_type 4 178 0 992 221 47 4 chrX 30842145 30842380 -131757550 - MIR SINE MIR -15 247 3 673 248 147 0 chrX 30842375 30842532 -131757398 - MER5A DNA MER1_type -2 187 8 * 360 329 30 18 chrX 30842538 30842705 -131757225 - MIR SINE MIR -86 176 8 22 35 0 0 chrX 30843107 30843136 -131756794 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 30843538 30843559 -131756371 + AT_rich Low_complexity Low_complexity 1 21 0 226 301 80 44 chrX 30843783 30843896 -131756034 - L2 LINE L2 0 3272 3156 819 246 17 6 chrX 30843991 30844170 -131755760 + MER5A DNA MER1_type 2 182 -7 412 254 88 40 chrX 30844430 30844791 -131755139 - MLT1L LTR MaLR -2 613 215 2087 143 96 69 chrX 30845623 30846071 -131753859 - MLT1C LTR MaLR 0 467 8 24 32 0 0 chrX 30850820 30850851 -131749079 + AT_rich Low_complexity Low_complexity 1 31 0 1051 261 135 18 chrX 30851069 30851625 -131748305 - L1MC4a LINE L1 -1895 5913 5293 21 0 0 0 chrX 30851635 30851656 -131748274 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chrX 30851761 30851792 -131748138 + AT_rich Low_complexity Low_complexity 1 31 0 196 403 0 0 chrX 30851807 30851874 -131748056 + L2 LINE L2 3197 3263 -50 273 225 9 72 chrX 30852431 30852542 -131747388 - MLT1J2 LTR MaLR -29 421 318 243 169 92 46 chrX 30852934 30852999 -131746931 + MIR SINE MIR 91 158 -104 265 321 12 0 chrX 30853350 30853434 -131746496 + MIR SINE MIR 59 143 -119 356 250 236 14 chrX 30854680 30854828 -131745102 + MER5A DNA MER1_type 9 189 0 991 213 58 0 chrX 30855378 30855636 -131744294 + L1MC4 LINE L1 7383 7655 -387 42083 35 5 3 chrX 30855653 30861799 -131738131 - L1PA3 LINE L1 0 6155 3 1210 195 75 23 chrX 30861801 30862149 -131737781 + L1MC4 LINE L1 7643 8008 -34 320 280 170 0 chrX 30862346 30862446 -131737484 - MIR3 SINE MIR -2 206 90 604 104 0 0 chrX 30862736 30862842 -131737088 - L1MA5A LINE L1 -255 6042 5937 * 878 115 18 24 chrX 30862841 30863006 -131736924 + L1MA5A LINE L1 6114 6277 -20 4707 92 12 12 chrX 30863011 30863683 -131736247 - L1PA15 LINE L1 -4 6161 5490 264 287 54 78 chrX 30864517 30864775 -131735155 + MLT1J LTR MaLR 48 299 -212 228 67 0 0 chrX 30865254 30865284 -131734646 + (GA)n Simple_repeat Simple_repeat 1 30 0 473 259 69 23 chrX 30865496 30865627 -131734303 + MER91A DNA MER1_type 25 161 -35 1618 196 72 54 chrX 30865840 30866340 -131733590 - L1ME3 LINE L1 -6 6156 5648 252 200 0 0 chrX 30866368 30866423 -131733507 + (TA)n Simple_repeat Simple_repeat 2 56 0 268 220 11 22 chrX 30866423 30866514 -131733416 - L1MC4 LINE L1 -1339 6703 6614 252 0 0 0 chrX 30867031 30867059 -131732871 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 321 148 148 78 chrX 30867333 30867361 -131732569 + L2 LINE L2 3174 3199 -114 1731 164 74 11 chrX 30867361 30867714 -131732216 - THE1C LTR MaLR 0 375 1 321 148 148 78 chrX 30867714 30867800 -131732130 + L2 LINE L2 3199 3296 -17 28 29 0 0 chrX 30868469 30868504 -131731426 + AT_rich Low_complexity Low_complexity 1 35 0 270 264 38 0 chrX 30868527 30868605 -131731325 - MIR SINE MIR -62 146 60 434 271 98 64 chrX 30869521 30869961 -131729969 - MLT1L LTR MaLR -19 596 142 483 305 8 8 chrX 30870610 30870738 -131729192 - MIR3 SINE MIR -8 200 73 711 296 80 4 chrX 30871068 30871294 -131728636 - MIR SINE MIR -17 245 3 824 268 0 0 chrX 30871382 30871565 -131728365 + MER5A DNA MER1_type 1 183 -6 386 217 200 8 chrX 30871586 30871706 -131728224 - MIR3 SINE MIR -50 158 16 858 191 6 11 chrX 30871990 30872168 -131727762 - MER5B DNA MER1_type 0 178 2 409 184 144 103 chrX 30872953 30873127 -131726803 + MER5A DNA MER1_type 9 189 0 269 279 13 0 chrX 30873174 30873253 -131726677 + L2 LINE L2 2966 3045 -227 2383 88 7 0 chrX 30874237 30874544 -131725386 + AluY SINE Alu 1 309 -2 502 253 70 70 chrX 30875536 30875601 -131724329 - MER5A DNA MER1_type 0 189 125 6629 63 10 2 chrX 30875601 30876799 -131723131 + L1PA8A LINE L1 4927 6131 0 502 253 70 70 chrX 30876799 30876919 -131723011 - MER5A DNA MER1_type -63 126 4 24 32 0 0 chrX 30877089 30877120 -131722810 + AT_rich Low_complexity Low_complexity 1 31 0 336 160 21 96 chrX 30877165 30877224 -131722706 - MER5B DNA MER1_type 0 178 127 2220 119 0 3 chrX 30877224 30877527 -131722403 + AluSx SINE Alu 1 302 -10 336 160 21 96 chrX 30877527 30877561 -131722369 - MER5B DNA MER1_type -51 127 92 4658 57 16 0 chrX 30877944 30878525 -131721405 - L1PA5 LINE L1 -1 6153 5564 26 0 0 0 chrX 30878534 30878560 -131721370 + AT_rich Low_complexity Low_complexity 1 26 0 2054 52 0 0 chrX 30878811 30879062 -131720868 - L1PA5 LINE L1 -5 6149 5899 234 128 0 0 chrX 30880478 30880517 -131719413 + (CA)n Simple_repeat Simple_repeat 2 40 0 214 360 36 36 chrX 30881244 30881383 -131718547 + L2 LINE L2 3134 3272 0 447 276 0 29 chrX 30881721 30881826 -131718104 + L2 LINE L2 3202 3303 -10 211 231 39 0 chrX 30881828 30881880 -131718050 + GA-rich Low_complexity Low_complexity 2 55 0 296 297 55 33 chrX 30881946 30882037 -131717893 - L2 LINE L2 -43 3229 3137 191 279 100 86 chrX 30883625 30883765 -131716165 + L2 LINE L2 2915 3056 -216 1877 245 53 6 chrX 30884074 30884543 -131715387 - LTR16C LTR ERVL 0 491 1 1479 161 7 65 chrX 30884565 30884844 -131715086 - AluJo SINE Alu -10 302 40 1310 215 78 43 chrX 30885436 30885860 -131714070 - MLT2B1 LTR ERVL 0 414 1 237 335 116 43 chrX 30885887 30886051 -131713879 + L2 LINE L2 3097 3272 0 457 283 25 0 chrX 30886058 30886178 -131713752 + L2 LINE L2 3190 3312 -1 1116 190 9 9 chrX 30886299 30886510 -131713420 - MER58A DNA MER1_type -4 220 10 997 162 88 28 chrX 30887095 30887379 -131712551 - MER33 DNA MER1_type -1 323 23 544 252 168 7 chrX 30887399 30887554 -131712376 + MER5A DNA MER1_type 10 189 0 21 57 0 0 chrX 30887735 30887770 -131712160 + AT_rich Low_complexity Low_complexity 1 35 0 200 345 0 52 chrX 30888141 30888257 -131711673 - L3b LINE CR1 -212 1371 1262 361 330 0 27 chrX 30889134 30889246 -131710684 + MIR SINE MIR 37 145 -63 21 0 0 0 chrX 30890020 30890041 -131709889 + AT_rich Low_complexity Low_complexity 1 21 0 572 357 130 33 chrX 30890325 30890920 -131709010 - L2 LINE L2 -10 3262 2606 624 259 137 29 chrX 30891047 30891391 -131708539 - LTR16A1 LTR ERVL -76 381 1 225 286 0 0 chrX 30891585 30891634 -131708296 + L2 LINE L2 3248 3296 -17 236 146 0 0 chrX 30891709 30891757 -131708173 - L1MB5 LINE L1 0 6174 6127 2880 135 23 2 chrX 30891761 30892242 -131707688 - L1PA15 LINE L1 0 6165 5675 221 359 83 39 chrX 30892532 30892713 -131707217 + L2 LINE L2 2913 3101 -171 755 211 46 40 chrX 30892878 30893053 -131706877 - MER45A DNA AcHobo -2 176 1 236 75 0 25 chrX 30893095 30893135 -131706795 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 1409 147 51 61 chrX 30893293 30893668 -131706262 - LTR37A LTR ERV1 0 426 56 281 187 421 0 chrX 30894296 30894403 -131705527 + MER5A DNA MER1_type 9 160 -29 21 57 0 0 chrX 30894715 30894750 -131705180 + AT_rich Low_complexity Low_complexity 1 35 0 2253 154 65 0 chrX 30894895 30895298 -131704632 - MSTB1 LTR MaLR 0 432 4 565 221 16 0 chrX 30895333 30895460 -131704470 - L1MB5 LINE L1 -2060 5748 5620 304 125 0 25 chrX 30895462 30895542 -131704388 + (TA)n Simple_repeat Simple_repeat 1 78 0 560 253 16 55 chrX 30896072 30896254 -131703676 + MIR SINE MIR 88 262 0 208 255 0 0 chrX 30896291 30896338 -131703592 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 208 0 0 0 chrX 30896402 30896425 -131703505 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1250 165 85 31 chrX 30896425 30896551 -131703379 - AluJo SINE Alu -30 282 164 2652 109 48 10 chrX 30896551 30896963 -131702967 + MSTA LTR MaLR 1 428 0 1250 165 85 31 chrX 30896963 30897096 -131702834 - AluJo SINE Alu -148 164 9 357 338 133 18 chrX 30897356 30897747 -131702183 - L1MB5 LINE L1 -768 5378 4943 681 270 33 7 chrX 30897892 30898196 -131701734 - L1MB5 LINE L1 -1498 4648 4337 232 317 36 36 chrX 30898335 30898556 -131701374 - L1MB5 LINE L1 -1870 4276 4056 933 287 36 8 chrX 30898614 30898976 -131700954 + L2 LINE L2 2700 3070 -243 441 200 39 23 chrX 30899319 30899449 -131700481 - L1PB4 LINE L1 -1 6155 6024 2484 168 97 9 chrX 30899584 30900108 -131699822 - MER101B LTR ERV1 0 570 1 584 291 123 30 chrX 30900221 30900554 -131699376 - L1MB5 LINE L1 -2661 3485 3122 1106 238 41 3 chrX 30901391 30901732 -131698198 + Charlie4a DNA MER1_type 91 444 -64 281 26 26 0 chrX 30904343 30904381 -131695549 + (TG)n Simple_repeat Simple_repeat 2 40 0 212 235 0 0 chrX 30904503 30904554 -131695376 + (TG)n Simple_repeat Simple_repeat 1 51 0 293 307 59 10 chrX 30904945 30905046 -131694884 - MIR SINE MIR -154 108 3 220 193 175 0 chrX 30905046 30905101 -131694829 - L2 LINE L2 -56 3257 3193 207 69 0 0 chrX 30908032 30908061 -131691869 + (TG)n Simple_repeat Simple_repeat 2 30 0 1311 164 45 11 chrX 30908332 30908619 -131691311 - MER33 DNA MER1_type -22 302 6 320 202 65 40 chrX 30908774 30908898 -131691032 - MER103 DNA DNA -3 163 37 2464 11 0 0 chrX 30909296 30909568 -131690362 - AluYa5 SINE Alu -1 310 39 25 31 0 0 chrX 30910633 30910665 -131689265 + AT_rich Low_complexity Low_complexity 1 32 0 298 287 119 10 chrX 30912070 30912171 -131687759 - MIR3 SINE MIR -9 199 88 180 0 0 0 chrX 30912942 30912962 -131686968 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 314 231 0 0 chrX 30913625 30913703 -131686227 + MER116 DNA Mariner 1 78 -2 214 241 74 0 chrX 30913829 30913883 -131686047 - L2 LINE L2 -5 3308 3251 * 272 109 164 18 chrX 30913850 30913905 -131686025 - MIR SINE MIR -24 238 176 294 29 0 0 chrX 30914363 30914398 -131685532 + (TC)n Simple_repeat Simple_repeat 2 36 0 384 22 0 0 chrX 30914399 30914444 -131685486 + (CA)n Simple_repeat Simple_repeat 2 46 0 1640 138 0 71 chrX 30914477 30914760 -131685170 - AluJo SINE Alu -17 295 33 670 147 0 0 chrX 30914762 30914864 -131685066 - AluJ/FLAM SINE Alu -210 102 1 2550 57 0 19 chrX 30915232 30915570 -131684360 - AluY SINE Alu 0 332 1 359 236 99 19 chrX 30915640 30915772 -131684158 - MIR SINE MIR -6 256 113 264 237 0 0 chrX 30916030 30916089 -131683841 + L1ME4a LINE L1 5978 6036 -85 22 56 0 0 chrX 30917304 30917340 -131682590 + AT_rich Low_complexity Low_complexity 1 36 0 322 269 37 45 chrX 30917375 30917509 -131682421 - MIR SINE MIR -50 212 80 845 244 27 23 chrX 30917783 30918004 -131681926 + MER58A DNA MER1_type 3 224 0 430 244 58 12 chrX 30918695 30918859 -131681071 + MER63 DNA MER1_type 38 1060 0 1029 214 15 0 chrX 30919002 30919203 -131680727 + AluJo SINE Alu 87 290 -22 307 299 0 8 chrX 30919240 30919357 -131680573 - L1ME LINE L1 -305 5816 5701 24 53 0 0 chrX 30919425 30919463 -131680467 + AT_rich Low_complexity Low_complexity 1 38 0 2067 112 54 0 chrX 30919611 30919905 -131680025 - AluSx SINE Alu -2 310 1 21 36 0 0 chrX 30920304 30920332 -131679598 + AT_rich Low_complexity Low_complexity 1 28 0 333 234 169 45 chrX 30920553 30920681 -131679249 - L1MC5 LINE L1 -37 7924 7773 429 20 0 0 chrX 30920681 30920731 -131679199 + (TG)n Simple_repeat Simple_repeat 2 51 0 333 234 169 45 chrX 30920731 30920756 -131679174 - L1MC5 LINE L1 -188 7773 7752 244 301 71 35 chrX 30921080 30921193 -131678737 - MIR SINE MIR -79 183 67 1042 273 109 40 chrX 30921903 30922426 -131677504 - MLT1G1 LTR MaLR -34 561 3 1121 216 23 0 chrX 30923321 30923539 -131676391 + MER58A DNA MER1_type 2 224 0 342 238 12 151 chrX 30924361 30924533 -131675397 - MER5A DNA MER1_type -25 164 6 1308 181 8 4 chrX 30924881 30925140 -131674790 - L1MB7 LINE L1 -15 6169 5910 248 255 170 9 chrX 30925439 30925545 -131674385 - MIR SINE MIR -19 243 121 1437 156 0 0 chrX 30925545 30925757 -131674173 + AluJo SINE Alu 1 212 -100 234 0 0 0 chrX 30925768 30925794 -131674136 + (A)n Simple_repeat Simple_repeat 1 26 0 351 334 60 108 chrX 30925861 30926193 -131673737 - L2 LINE L2 0 3272 2957 * 577 357 109 6 chrX 30926190 30926529 -131673401 - L2 LINE L2 -529 2785 2412 700 223 145 42 chrX 30926586 30926918 -131673012 - LTR37A LTR ERV1 -53 373 8 327 277 40 10 chrX 30928750 30928851 -131671079 + MIR SINE MIR 40 143 -119 315 267 108 108 chrX 30929730 30929981 -131669949 + MER102a DNA MER1_type 77 327 -3 189 167 0 0 chrX 30930052 30930088 -131669842 - MER5C DNA MER1_type 0 324 289 300 227 40 0 chrX 30930253 30930328 -131669602 - MER5C DNA MER1_type -202 122 45 267 334 17 14 chrX 30930828 30930955 -131668975 - MIR SINE MIR -62 146 20 1631 189 3 20 chrX 30931476 30931773 -131668157 + AluJo SINE Alu 1 292 -20 2286 95 3 0 chrX 30931778 30932072 -131667858 + AluSq SINE Alu 1 295 -18 2467 53 0 31 chrX 30932388 30932706 -131667224 + AluY SINE Alu 1 308 -3 1365 159 9 4 chrX 30932965 30933191 -131666739 - AluJo SINE Alu 0 312 86 275 229 57 132 chrX 30933246 30933526 -131666404 - MER31-int LTR ERV1 -2028 2908 2650 1633 183 60 100 chrX 30933673 30933856 -131666074 + MLT1D LTR MaLR 6 195 -310 180 0 0 0 chrX 30933856 30933876 -131666054 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 6946 55 10 11 chrX 30933876 30935466 -131664464 - SVA Other Other -723 1367 11 1633 183 60 100 chrX 30935466 30935796 -131664134 + MLT1D LTR MaLR 193 502 -3 347 223 39 31 chrX 30936354 30936484 -131663446 - MER31-int LTR ERV1 -3021 1915 1785 28 48 0 0 chrX 30936608 30936650 -131663280 + AT_rich Low_complexity Low_complexity 1 42 0 350 170 123 53 chrX 30936691 30936862 -131663068 - MER31-int LTR ERV1 -3465 1471 1289 1098 68 0 8 chrX 30937738 30937871 -131662059 + AluSq/x SINE Alu 1 132 -181 22 0 0 0 chrX 30937871 30937893 -131662037 + AT_rich Low_complexity Low_complexity 1 22 0 732 315 26 13 chrX 30938643 30938945 -131660985 + LTR16C LTR ERVL 159 464 -27 232 279 108 9 chrX 30939746 30939857 -131660073 + L1ME4a LINE L1 5969 6090 -31 549 306 95 0 chrX 30940044 30940266 -131659664 - MLT1L LTR MaLR -1 614 372 584 295 90 8 chrX 30940272 30940738 -131659192 - MLT1G1 LTR MaLR -3 592 1 227 250 17 0 chrX 30940861 30940921 -131659009 - MLT1L LTR MaLR -387 228 168 252 263 9 70 chrX 30941134 30941248 -131658682 - MLT1L LTR MaLR -508 107 1 545 286 54 15 chrX 30941345 30941548 -131658382 - L3 LINE CR1 -1 1576 1366 340 147 53 0 chrX 30942107 30942182 -131657748 - MLT1H LTR MaLR 0 549 471 392 255 0 6 chrX 30942228 30942385 -131657545 + (TA)n Simple_repeat Simple_repeat 1 156 0 357 339 67 18 chrX 30942568 30942733 -131657197 - L1ME3A LINE L1 -208 5962 5790 312 218 0 26 chrX 30942733 30942811 -131657119 - MER58B DNA MER1_type -3 338 263 195 69 0 0 chrX 30944018 30944047 -131655883 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1013 235 38 4 chrX 30944489 30944727 -131655203 + MIR SINE MIR 2 247 -15 2332 238 75 26 chrX 30945304 30946061 -131653869 - L1ME3A LINE L1 -11 6419 5626 538 257 88 64 chrX 30946150 30946684 -131653246 - L1ME3A LINE L1 -4595 1992 1446 604 293 84 30 chrX 30946716 30947086 -131652844 - L1MEd LINE L1 -5052 1344 935 4004 117 54 34 chrX 30947749 30948504 -131651426 - L1PB4 LINE L1 0 6156 5387 3552 186 32 8 chrX 30948636 30949407 -131650523 + L1MB8 LINE L1 5351 6140 -38 251 231 66 11 chrX 30949408 30949499 -131650431 - L1MC5 LINE L1 -31 7930 7835 279 360 63 18 chrX 30949509 30949731 -131650199 - L2 LINE L2 -1595 1719 1488 2094 187 60 17 chrX 30951519 30952201 -131647729 + L1MC1 LINE L1 4745 5467 -743 * 2323 131 91 11 chrX 30952196 30952638 -131647292 + L1MA9 LINE L1 5793 6269 -43 5453 124 2 34 chrX 30952638 30953533 -131646397 + L1MC1 LINE L1 5465 6331 -2 222 200 22 0 chrX 30953590 30953635 -131646295 - MIR SINE MIR -111 151 106 905 301 46 37 chrX 30954322 30954757 -131645173 - LTR16C LTR ERVL 0 491 53 23 33 0 0 chrX 30958282 30958312 -131641618 + AT_rich Low_complexity Low_complexity 1 30 0 280 283 97 9 chrX 30958641 30958754 -131641176 + MIR SINE MIR 102 224 -38 6280 127 21 16 chrX 30959890 30961037 -131638893 - L1MA10 LINE L1 -7 6327 5155 1020 233 37 10 chrX 30961131 30961427 -131638503 - L1MC4 LINE L1 -1 8041 7738 597 14 0 0 chrX 30962068 30962138 -131637792 + (CA)n Simple_repeat Simple_repeat 2 71 0 464 286 103 13 chrX 30963497 30963731 -131636199 - MLT1L LTR MaLR -10 605 351 1301 174 45 7 chrX 30964228 30964516 -131635414 + MER33 DNA MER1_type 3 301 -23 2204 112 0 13 chrX 30964748 30965062 -131634868 - AluSx SINE Alu -2 310 1 619 186 26 64 chrX 30965078 30965234 -131634696 + MER5B DNA MER1_type 2 151 -27 14838 167 16 13 chrX 30966345 30969809 -131630121 + L1MA3 LINE L1 3398 6880 -844 2528 51 0 0 chrX 30969809 30970105 -131629825 - AluY SINE Alu -15 296 1 14838 167 16 13 chrX 30970105 30970218 -131629712 + L1MA3 LINE L1 6880 6991 -733 1085 128 21 0 chrX 30970218 30970405 -131629525 - Tigger1 DNA MER2_type -1114 1304 1114 3101 115 18 37 chrX 30970410 30970957 -131628973 + L1MA3 LINE L1 7188 7724 0 10401 123 23 12 chrX 30970964 30972722 -131627208 - Tigger1 DNA MER2_type -641 1777 1 351 296 128 35 chrX 30973467 30973693 -131626237 - MIR SINE MIR 0 262 16 579 288 12 21 chrX 30974496 30974739 -131625191 - MER112 DNA MER1_type -14 246 6 2071 108 6 54 chrX 30974740 30975054 -131624876 + AluSx SINE Alu 1 299 -13 3674 88 5 27 chrX 30975121 30975205 -131624725 + L1P LINE L1 3002 3086 -3060 2315 91 16 0 chrX 30975205 30975513 -131624417 + AluSp SINE Alu 1 313 0 3674 88 5 27 chrX 30975513 30976021 -131623909 + L1P LINE L1 3086 3581 -2565 484 308 75 13 chrX 30976202 30976434 -131623496 + HAL1 LINE L1 1223 1480 -1027 180 77 0 0 chrX 30976434 30976460 -131623470 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 484 308 75 13 chrX 30976460 30976535 -131623395 + HAL1 LINE L1 1480 1549 -958 926 122 0 8 chrX 30976654 30976785 -131623145 - AluSg/x SINE Alu -12 298 169 273 294 11 0 chrX 30977169 30977261 -131622669 + L1ME3A LINE L1 3 95 -5975 311 330 73 0 chrX 30977414 30977632 -131622298 + L1ME3A LINE L1 2545 2778 -3302 262 304 0 36 chrX 30977672 30977810 -131622120 + L1ME3A LINE L1 3408 3540 -2540 886 268 98 45 chrX 30977826 30978297 -131621633 + L1ME3A LINE L1 5471 5966 -138 3233 109 12 32 chrX 30978390 30978924 -131621006 - L1MA4 LINE L1 -436 5864 5342 3047 113 7 0 chrX 30978924 30979349 -131620581 - MSTA LTR MaLR 0 428 1 3233 109 12 32 chrX 30979349 30979400 -131620530 - L1MA4 LINE L1 -958 5342 5291 512 95 30 0 chrX 30980035 30980137 -131619793 + L1MA4 LINE L1 5777 5885 -412 1955 161 20 55 chrX 30980152 30980556 -131619374 + MLT1B LTR MaLR 1 390 0 528 304 22 78 chrX 30980652 30980882 -131619048 + L3 LINE CR1 902 1118 -459 * 537 289 56 15 chrX 30980881 30981078 -131618852 - MIR SINE MIR -6 256 52 1080 330 139 46 chrX 30981364 30983426 -131616504 + L2 LINE L2 239 2491 -823 1254 204 41 55 chrX 30983656 30984053 -131615877 - MLT1B LTR MaLR 0 396 1 472 336 41 44 chrX 30984722 30985017 -131614913 + MLT1H LTR MaLR 7 300 -249 265 153 7 0 chrX 30985143 30985202 -131614728 + MLT1E3 LTR MaLR 489 611 0 374 345 86 46 chrX 30985209 30985518 -131614412 + L2 LINE L2 2621 2965 -307 2147 179 63 16 chrX 30985518 30985964 -131613966 - MLT1C LTR MaLR 0 467 1 374 345 86 46 chrX 30985964 30986081 -131613849 + L2 LINE L2 2965 3076 -196 379 353 0 25 chrX 30987230 30987352 -131612578 + L2 LINE L2 3106 3224 -48 292 128 0 0 chrX 30987443 30987490 -131612440 + MLT1I LTR MaLR 98 144 -265 2023 154 0 0 chrX 30987508 30987806 -131612124 + AluSx SINE Alu 15 312 0 466 282 74 63 chrX 30987882 30988166 -131611764 + MLT1H LTR MaLR 247 533 -16 551 189 0 0 chrX 30988634 30988740 -131611190 - MER63 DNA MER1_type -94 742 11 735 302 40 55 chrX 30990464 30990861 -131609069 - L1M4 LINE L1 -5802 740 350 232 337 97 15 chrX 30990992 30991188 -131608742 - L1M4 LINE L1 -6312 230 19 364 152 0 0 chrX 30991196 30991262 -131608668 - MLT1B LTR MaLR -2 388 323 535 132 94 9 chrX 30991266 30991372 -131608558 - MLT1B LTR MaLR -243 147 33 26 0 0 0 chrX 30991430 30991456 -131608474 + AT_rich Low_complexity Low_complexity 1 26 0 1989 154 13 10 chrX 30991904 30992094 -131607836 - AluJo SINE Alu 0 312 119 198 0 0 0 chrX 30992094 30992116 -131607814 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1989 154 13 10 chrX 30992116 30992236 -131607694 - AluJo SINE Alu -193 119 1 427 229 57 14 chrX 30993626 30993766 -131606164 - L1MC4 LINE L1 -1 8041 7896 1135 121 0 0 chrX 30993791 30993948 -131605982 - AluSp/q SINE Alu 0 313 157 900 189 6 11 chrX 30993948 30994128 -131605802 - MLT1D LTR MaLR -326 179 1 303 277 107 0 chrX 30994128 30994240 -131605690 + MIR SINE MIR 139 262 0 880 212 10 30 chrX 30994818 30995021 -131604909 + LTR16A LTR ERVL 246 444 -6 351 274 86 98 chrX 30995028 30995353 -131604577 - MLT1K LTR MaLR -86 502 182 22 0 0 0 chrX 30995705 30995727 -131604203 + AT_rich Low_complexity Low_complexity 1 22 0 219 320 67 0 chrX 30995756 30995831 -131604099 + MIR SINE MIR 67 146 -62 41942 44 0 1 chrX 30995837 31001987 -131597943 + L1PA4 LINE L1 2 6151 -4 989 250 88 70 chrX 31003773 31004273 -131595657 - LTR33A LTR ERVL -14 509 1 758 249 47 26 chrX 31004912 31005105 -131594825 + MIR SINE MIR 7 203 -59 3635 139 48 8 chrX 31005147 31005859 -131594071 - Tigger3(Golem) DNA MER2_type 0 3029 2290 2257 189 48 67 chrX 31055906 31056375 -131543555 - L1MD2 LINE L1 -3 6356 5903 1694 168 7 23 chrX 31056375 31056678 -131543252 - AluJb SINE Alu -14 298 1 2257 189 48 67 chrX 31056678 31056896 -131543034 - L1MD2 LINE L1 -456 5903 5682 794 192 176 0 chrX 31057880 31058062 -131541868 + MER58A DNA MER1_type 2 215 -9 2338 144 8 0 chrX 31058369 31058731 -131541199 + MLT1A1 LTR MaLR 1 365 0 2267 115 0 3 chrX 31059259 31059563 -131540367 + AluSx SINE Alu 1 303 -9 2221 121 3 0 chrX 31059712 31060017 -131539913 - AluSx SINE Alu -6 306 1 2127 122 20 7 chrX 31060633 31060936 -131538994 - AluSx SINE Alu -4 308 2 21 0 0 0 chrX 31061028 31061049 -131538881 + AT_rich Low_complexity Low_complexity 1 21 0 195 232 14 116 chrX 31061979 31062048 -131537882 + L2 LINE L2 3211 3272 0 585 129 0 0 chrX 31062902 31062995 -131536935 + (CA)n Simple_repeat Simple_repeat 2 94 0 195 0 56 28 chrX 31063375 31063411 -131536519 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 740 310 29 4 chrX 31064763 31065005 -131534925 + MIR SINE MIR 15 262 0 289 377 22 22 chrX 31065357 31065495 -131534435 + MIR3 SINE MIR 10 147 -61 294 246 14 14 chrX 31065671 31065740 -131534190 + L2 LINE L2 3195 3263 -9 620 257 127 30 chrX 31066430 31066768 -131533162 - HAL1 LINE L1 -9 2498 2128 337 291 63 25 chrX 31067243 31067401 -131532529 - HAL1b LINE L1 -446 902 739 219 228 13 38 chrX 31067775 31067854 -131532076 + (CATATA)n Simple_repeat Simple_repeat 3 79 0 2179 108 0 0 chrX 31068067 31068385 -131531545 + AluSx SINE Alu 1 318 0 281 209 124 124 chrX 31068685 31068814 -131531116 - MER5B DNA MER1_type -49 129 1 294 234 126 18 chrX 31070113 31070224 -131529706 + MIR SINE MIR 70 192 -70 42 71 0 0 chrX 31070280 31070364 -131529566 + AT_rich Low_complexity Low_complexity 1 84 0 564 303 42 0 chrX 31070396 31070561 -131529369 - MIR SINE MIR -77 185 14 1130 174 75 72 chrX 31070561 31070644 -131529286 - MLT1D LTR MaLR 0 505 424 3769 100 9 104 chrX 31070644 31071259 -131528671 - MER51A LTR ERV1 0 634 93 2381 69 3 41 chrX 31071259 31071576 -131528354 - AluSp SINE Alu -8 305 1 3769 100 9 104 chrX 31071576 31071661 -131528269 - MER51A LTR ERV1 -541 93 1 1130 174 75 72 chrX 31071661 31072024 -131527906 - MLT1D LTR MaLR -81 424 1 374 231 209 8 chrX 31072046 31072180 -131527750 - MIR3 SINE MIR -15 193 33 2297 241 54 2 chrX 31072559 31073111 -131526819 - MLT1G LTR MaLR 0 590 10 385 275 67 34 chrX 31073141 31073213 -131526717 - MLT1L LTR MaLR -20 595 527 2632 106 35 30 chrX 31073213 31073639 -131526291 + MSTA LTR MaLR 1 428 0 385 275 67 34 chrX 31073639 31073744 -131526186 - MLT1L LTR MaLR -88 527 412 234 303 26 0 chrX 31073855 31073931 -131525999 - MLT1L LTR MaLR -333 282 205 26 64 0 0 chrX 31074158 31074205 -131525725 + AT_rich Low_complexity Low_complexity 1 47 0 379 287 48 59 chrX 31074850 31075325 -131524605 + L1MEd LINE L1 540 1007 -5112 2217 103 0 3 chrX 31075325 31075616 -131524314 + AluY SINE Alu 5 294 -17 379 287 48 59 chrX 31075616 31075857 -131524073 + L1MEd LINE L1 1007 1249 -4870 31 0 0 0 chrX 31076292 31076323 -131523607 + AT_rich Low_complexity Low_complexity 1 31 0 317 233 47 23 chrX 31076694 31076780 -131523150 - L1M LINE L1 -2422 5386 5299 1281 206 26 18 chrX 31076926 31077336 -131522594 - MLT2D LTR ERVL -50 414 1 424 216 116 66 chrX 31077358 31077539 -131522391 - LTR33 LTR ERVL 0 521 332 614 274 111 5 chrX 31077625 31077815 -131522115 - LTR33 LTR ERVL -311 210 1 451 286 60 46 chrX 31077815 31078032 -131521898 + L1MEd LINE L1 1248 1467 -4843 620 197 0 7 chrX 31078032 31078174 -131521756 - L1MA5 LINE L1 -3 6297 6157 2025 144 72 55 chrX 31078177 31078215 -131521715 - MSTA LTR MaLR -4 424 388 2438 87 3 3 chrX 31078215 31078524 -131521406 + AluSp SINE Alu 5 313 0 2025 144 72 55 chrX 31078524 31078902 -131521028 - MSTA LTR MaLR -40 388 1 3032 239 59 15 chrX 31078902 31079942 -131519988 - MST-int LTR MaLR 0 1735 546 1062 128 0 0 chrX 31079940 31080104 -131519826 - L1 LINE L1 -1897 4249 4086 * 584 291 109 30 chrX 31080124 31081274 -131518656 + L1MEd LINE L1 1478 2683 -3446 485 220 11 77 chrX 31082083 31082265 -131517665 - MER5B DNA MER1_type -4 174 5 186 43 0 0 chrX 31082413 31082436 -131517494 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 870 178 50 0 chrX 31082529 31082709 -131517221 + MER20 DNA MER1_type 31 219 0 211 277 36 71 chrX 31082714 31082826 -131517104 - L2 LINE L2 -65 3248 3141 305 191 19 19 chrX 31082835 31082888 -131517042 + (TA)n Simple_repeat Simple_repeat 1 53 -52 2369 138 26 54 chrX 31082888 31083388 -131516542 + LTR19A LTR ERV1 1 486 0 305 191 19 19 chrX 31083388 31083439 -131516491 + (TA)n Simple_repeat Simple_repeat 52 105 0 271 388 33 0 chrX 31083452 31083604 -131516326 - L2 LINE L2 -169 3144 2988 1015 309 126 2 chrX 31083639 31084085 -131515845 - L2 LINE L2 -1963 1351 851 2104 141 3 0 chrX 31084104 31084408 -131515522 - AluSx SINE Alu -5 307 3 320 326 96 48 chrX 31086791 31086978 -131512952 + L2 LINE L2 3077 3272 0 1972 130 18 7 chrX 31087053 31087337 -131512593 + AluSx SINE Alu 5 291 -21 21 0 0 0 chrX 31087339 31087360 -131512570 + AT_rich Low_complexity Low_complexity 1 21 0 2098 129 52 19 chrX 31087751 31088114 -131511816 - THE1C LTR MaLR 0 375 1 9343 108 60 14 chrX 31088119 31089624 -131510306 - THE1C-int LTR MaLR -6 1574 1 1219 134 90 80 chrX 31089624 31090045 -131509885 - THE1C LTR MaLR 0 428 1 204 299 52 0 chrX 31090407 31090484 -131509446 - L2 LINE L2 -9 3263 3183 188 349 82 14 chrX 31090497 31090643 -131509287 - L2 LINE L2 -251 3021 2866 185 319 234 7 chrX 31090649 31090790 -131509140 - L2 LINE L2 -1064 2250 2078 258 105 0 0 chrX 31090830 31090868 -131509062 + (CA)n Simple_repeat Simple_repeat 1 38 0 447 163 38 123 chrX 31091125 31091283 -131508647 + MLT1H LTR MaLR 408 546 -3 390 355 112 25 chrX 31091289 31091805 -131508125 - L2 LINE L2 -1313 2001 1441 2162 100 0 45 chrX 31092148 31092287 -131507643 + AluSg SINE Alu 5 149 -161 899 47 0 0 chrX 31092287 31092394 -131507536 + U6 snRNA snRNA 1 107 0 5335 24 7 0 chrX 31092394 31093014 -131506916 + L1PA5 LINE L1 5529 6152 -2 2162 100 0 45 chrX 31093014 31093184 -131506746 + AluSg SINE Alu 147 301 -9 1265 261 99 21 chrX 31094134 31094567 -131505363 - MLT1H LTR MaLR -2 547 81 2186 114 3 16 chrX 31096431 31096748 -131503182 - AluSq SINE Alu 0 313 1 4128 228 23 34 chrX 31096859 31098178 -131501752 + L1MCb LINE L1 1 1316 -4850 2375 67 0 3 chrX 31098507 31098807 -131501123 - AluY SINE Alu -12 299 1 1036 97 0 0 chrX 31098807 31098941 -131500989 - AluY SINE Alu -177 134 1 774 288 57 50 chrX 31098944 31099347 -131500583 - MLT1J LTR MaLR -74 437 32 510 129 0 0 chrX 31099347 31099432 -131500498 + (GGGA)n Simple_repeat Simple_repeat 4 88 0 216 200 0 0 chrX 31099432 31099477 -131500453 + A-rich Low_complexity Low_complexity 2 46 0 1472 192 86 28 chrX 31099676 31099860 -131500070 - MER63B DNA MER1_type -643 419 247 14635 124 34 22 chrX 31099860 31102248 -131497682 + Tigger1 DNA MER2_type 1 2418 0 1472 192 86 28 chrX 31102248 31102459 -131497471 - MER63B DNA MER1_type -815 247 1 568 248 65 0 chrX 31102465 31102618 -131497312 - MLT1J LTR MaLR -339 172 10 30 0 0 0 chrX 31102903 31102933 -131496997 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 31103847 31103870 -131496060 + AT_rich Low_complexity Low_complexity 1 23 0 2713 162 14 73 chrX 31104747 31104868 -131495062 - MER41C LTR ERV1 0 554 427 2292 97 7 7 chrX 31104868 31105178 -131494752 + AluSx SINE Alu 1 310 -2 2713 162 14 73 chrX 31105178 31105644 -131494286 - MER41C LTR ERV1 -127 427 2 715 175 164 23 chrX 31105645 31105816 -131494114 - HERVK14 LTR ERVK -186 5759 5565 * 927 110 7 21 chrX 31105693 31105838 -131494092 - MER41C-int LTR ERV1 -76 5870 5728 * 4392 103 81 43 chrX 31105833 31106651 -131493279 - MER41C-int LTR ERV1 -460 5486 4638 18683 148 53 23 chrX 31106658 31110193 -131489737 - MER41C-int LTR ERV1 -1926 4020 381 439 221 0 0 chrX 31110297 31110392 -131489538 - PRIMA41-int LTR ERV1 -7240 516 422 2492 66 0 0 chrX 31110654 31110957 -131488973 + AluY SINE Alu 1 303 -8 1412 53 0 0 chrX 31110958 31111127 -131488803 + AluY SINE Alu 131 299 -12 5068 77 3 1 chrX 31112108 31112767 -131487163 + PABL_A LTR ERV1 1 660 0 3608 155 99 36 chrX 31112883 31113068 -131486862 + L1MB8 LINE L1 5303 5475 -703 738 186 16 0 chrX 31113068 31113197 -131486733 + FLAM_C SINE Alu 1 131 -2 3608 155 99 36 chrX 31113197 31113826 -131486104 + L1MB8 LINE L1 5475 6169 -9 183 80 0 0 chrX 31113845 31113870 -131486060 + (TG)n Simple_repeat Simple_repeat 1 25 0 35 0 0 0 chrX 31114520 31114555 -131485375 + AT_rich Low_complexity Low_complexity 1 35 0 324 204 11 43 chrX 31114651 31114744 -131485186 + L1MC4 LINE L1 6615 6704 -1338 608 201 11 4 chrX 31114745 31115027 -131484903 + (TA)n Simple_repeat Simple_repeat 1 284 0 379 136 26 84 chrX 31115040 31115367 -131484563 + (TA)n Simple_repeat Simple_repeat 1 308 0 208 111 41 76 chrX 31115385 31115557 -131484373 + (TA)n Simple_repeat Simple_repeat 1 166 0 202 82 47 47 chrX 31115578 31115663 -131484267 + (TA)n Simple_repeat Simple_repeat 2 86 0 338 143 69 12 chrX 31115686 31116020 -131483910 + (TA)n Simple_repeat Simple_repeat 1 353 0 1774 211 77 43 chrX 31116033 31116616 -131483314 - L1ME3 LINE L1 -42 6120 5518 2118 169 30 62 chrX 31116772 31117300 -131482630 + MLT2B1 LTR ERVL 3 513 -7 557 279 29 0 chrX 31117413 31117553 -131482377 + MIR SINE MIR 47 190 -72 633 167 28 7 chrX 31117588 31117732 -131482198 + CT-rich Low_complexity Low_complexity 2 148 0 889 251 20 85 chrX 31118459 31118503 -131481427 - L2 LINE L2 -132 3181 3136 1087 253 42 73 chrX 31118503 31119068 -131480862 + MLT1H LTR MaLR 1 548 -1 889 251 20 85 chrX 31119068 31119381 -131480549 - L2 LINE L2 -177 3136 2850 2271 112 0 0 chrX 31119381 31119676 -131480254 + AluSg SINE Alu 1 295 -15 889 251 20 85 chrX 31119676 31119719 -131480211 - L2 LINE L2 -463 2850 2806 1945 142 35 41 chrX 31119867 31119994 -131479936 - MLT1A1 LTR MaLR 0 365 239 2049 115 7 10 chrX 31119994 31120289 -131479641 + AluSq SINE Alu 1 294 -19 1945 142 35 41 chrX 31120289 31120528 -131479402 - MLT1A1 LTR MaLR -126 239 1 270 212 0 15 chrX 31120691 31120757 -131479173 + LTR67 LTR ERVL 493 557 0 619 304 103 18 chrX 31120896 31121120 -131478810 - MIR SINE MIR 0 262 20 22 35 0 0 chrX 31121361 31121390 -131478540 + AT_rich Low_complexity Low_complexity 1 29 0 753 160 19 51 chrX 31121394 31121550 -131478380 - FRAM SINE Alu -25 151 1 292 255 10 31 chrX 31121566 31121664 -131478266 - MIR SINE MIR -76 186 91 258 56 0 0 chrX 31122285 31122321 -131477609 + (CA)n Simple_repeat Simple_repeat 1 36 0 336 257 27 0 chrX 31122325 31122399 -131477531 + L2 LINE L2 3208 3283 -30 797 244 75 26 chrX 31122410 31122676 -131477254 - L2 LINE L2 -14 3299 3021 283 278 22 22 chrX 31122680 31122770 -131477160 - L2 LINE L2 -214 3058 2969 593 236 8 0 chrX 31122892 31123015 -131476915 - MLT1K LTR MaLR -325 263 140 190 250 62 62 chrX 31123219 31123283 -131476647 + L2 LINE L2 3246 3309 -4 935 116 7 0 chrX 31123759 31123906 -131476024 + L1MB7 LINE L1 5799 5946 -238 625 242 5 53 chrX 31123913 31124103 -131475827 - L2 LINE L2 -952 2362 2182 21 0 0 0 chrX 31124602 31124623 -131475307 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chrX 31124847 31124871 -131475059 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 541 228 35 0 chrX 31124881 31124995 -131474935 + MLT1K LTR MaLR 140 257 -331 6882 25 0 2 chrX 31125083 31125889 -131474041 + L1PA4 LINE L1 5349 6152 -3 345 317 21 111 chrX 31125933 31126267 -131473663 + L2 LINE L2 2969 3272 0 189 74 0 0 chrX 31126331 31126358 -131473572 + (CA)n Simple_repeat Simple_repeat 1 27 0 181 374 81 45 chrX 31129641 31129839 -131470091 + L2 LINE L2 3020 3224 -48 35 0 0 0 chrX 31130054 31130089 -131469841 + AT_rich Low_complexity Low_complexity 1 35 0 234 146 0 0 chrX 31130089 31130130 -131469800 - MLT1L LTR MaLR -17 598 558 1132 183 0 5 chrX 31130137 31130323 -131469607 + AluJo SINE Alu 126 310 -2 254 310 15 36 chrX 31130401 31130626 -131469304 - MLT1J LTR MaLR -223 392 110 253 283 11 43 chrX 31130567 31130659 -131469271 - LTR67 LTR ERVL -384 173 85 * 1650 85 31 0 chrX 31131550 31131773 -131468157 - MER30 DNA MER1_type 0 230 1 636 233 5 109 chrX 31131784 31131842 -131468088 + MER5B DNA MER1_type 1 63 -115 2348 109 0 0 chrX 31131842 31132153 -131467777 - AluSq SINE Alu -2 311 1 636 233 5 109 chrX 31132153 31132287 -131467643 + MER5B DNA MER1_type 63 173 -5 1978 166 43 8 chrX 31132287 31132660 -131467270 - MLT1B LTR MaLR 0 390 5 540 253 180 13 chrX 31132688 31132838 -131467092 - MER5A DNA MER1_type -6 183 9 974 205 5 5 chrX 31132859 31133044 -131466886 - MER5A DNA MER1_type -1 188 4 2161 115 3 20 chrX 31133146 31133450 -131466480 - AluSx SINE Alu -13 299 1 21 36 0 0 chrX 31133768 31133796 -131466134 + AT_rich Low_complexity Low_complexity 1 28 0 211 197 0 30 chrX 31133946 31134012 -131465918 + (TA)n Simple_repeat Simple_repeat 2 65 0 473 305 63 0 chrX 31134821 31134995 -131464935 - MIR SINE MIR 0 262 78 854 262 44 82 chrX 31134996 31135408 -131464522 + MLT1J LTR MaLR 1 396 -115 204 219 170 24 chrX 31135544 31135625 -131464305 + MIR SINE MIR 44 123 -85 452 291 54 79 chrX 31135798 31136114 -131463816 + LTR16C LTR ERVL 158 465 -26 716 278 67 28 chrX 31136248 31136608 -131463322 + L1ME2 LINE L1 5483 5856 -308 1863 194 48 19 chrX 31137502 31137976 -131461954 - Charlie4a DNA MER1_type -3 505 18 198 136 0 114 chrX 31138185 31138229 -131461701 - MIR SINE MIR 0 262 224 3424 141 110 10 chrX 31138868 31139577 -131460353 - L1MC3 LINE L1 -8 7777 6998 228 291 47 0 chrX 31140176 31140262 -131459668 - LTR67 LTR ERVL 0 557 468 764 268 93 56 chrX 31140272 31140754 -131459176 + MLT1H LTR MaLR 22 521 -28 277 287 35 43 chrX 31140788 31140903 -131459027 - LTR67 LTR ERVL -85 472 359 236 333 19 9 chrX 31141030 31141115 -131458815 - LTR67 LTR ERVL -357 200 112 240 59 0 0 chrX 31141115 31141149 -131458781 + (TG)n Simple_repeat Simple_repeat 2 35 0 236 333 19 9 chrX 31141149 31141168 -131458762 - LTR67 LTR ERVL -445 112 95 197 262 103 65 chrX 31142884 31142991 -131456939 + L2 LINE L2 3180 3290 -23 708 261 53 0 chrX 31143267 31143474 -131456456 - MIR SINE MIR -44 218 1 214 279 49 0 chrX 31143778 31143839 -131456091 + MIR SINE MIR 51 114 -148 213 154 0 0 chrX 31145723 31145762 -131454168 + (TA)n Simple_repeat Simple_repeat 1 39 0 569 304 69 10 chrX 31146409 31146613 -131453317 + MIR SINE MIR 25 240 -22 243 233 188 15 chrX 31146767 31146900 -131453030 + L2 LINE L2 3027 3182 -131 5466 132 32 41 chrX 31146931 31147788 -131452142 - L1MA4 LINE L1 -24 6276 5428 4064 88 2 15 chrX 31147788 31148376 -131451554 - L1PB1 LINE L1 0 6151 5572 5466 132 32 41 chrX 31148376 31148549 -131451381 - L1MA4 LINE L1 -872 5428 5255 523 270 54 20 chrX 31148554 31148702 -131451228 + L2 LINE L2 3159 3311 -2 2034 109 7 18 chrX 31149672 31149983 -131449947 + AluSc SINE Alu 1 308 0 261 276 0 0 chrX 31150362 31150438 -131449492 - MER69 DNA AcHobo -2 2524 2449 798 250 66 9 chrX 31150536 31150748 -131449182 + MER58A DNA MER1_type 1 224 0 1495 273 65 12 chrX 31152386 31152818 -131447112 + MLT1J LTR MaLR 8 462 -49 833 264 111 11 chrX 31153000 31153280 -131446650 - MLT1H LTR MaLR -236 313 6 645 305 147 0 chrX 31153608 31153880 -131446050 + L2 LINE L2 3002 3313 0 23 0 0 0 chrX 31153922 31153945 -131445985 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chrX 31154241 31154284 -131445646 + AT_rich Low_complexity Low_complexity 1 43 0 906 271 82 38 chrX 31154820 31155319 -131444611 - MLT1H1 LTR MaLR -2 553 43 6962 215 87 23 chrX 31155319 31156804 -131443126 + L1M4 LINE L1 10 1398 -5246 2267 110 3 0 chrX 31156804 31157112 -131442818 - AluSx SINE Alu -3 309 1 6962 215 87 23 chrX 31157112 31158407 -131441523 + L1M4 LINE L1 1398 2990 -3654 446 147 0 0 chrX 31158407 31158475 -131441455 - MLT1H1 LTR MaLR -527 68 1 2149 97 7 27 chrX 31158943 31159243 -131440687 + AluSx SINE Alu 6 299 -13 1998 213 45 19 chrX 31159433 31159897 -131440033 + MLT1E2 LTR MaLR 151 626 0 216 67 0 0 chrX 31160784 31160814 -131439116 + (TC)n Simple_repeat Simple_repeat 1 30 0 2356 89 6 10 chrX 31161154 31161467 -131438463 + AluSp SINE Alu 1 312 -1 477 293 60 67 chrX 31161917 31162007 -131437923 - MER102b DNA MER1_type -1090 338 249 2163 111 0 16 chrX 31162007 31162314 -131437616 - AluSx SINE Alu -10 302 1 477 293 60 67 chrX 31162314 31162537 -131437393 - MER102b DNA MER1_type -1179 249 27 714 54 0 0 chrX 31162584 31162676 -131437254 + AluY SINE Alu 207 298 -13 246 62 0 0 chrX 31162779 31162811 -131437119 + (TA)n Simple_repeat Simple_repeat 1 32 0 401 297 145 65 chrX 31163618 31163894 -131436036 + LTR16C LTR ERVL 3 300 -191 261 130 22 0 chrX 31163896 31163942 -131435988 - MER5A DNA MER1_type -142 47 1 1611 201 30 54 chrX 31165460 31165889 -131434041 - MER31B LTR ERV1 0 466 48 295 343 37 0 chrX 31165901 31166009 -131433921 + MIR SINE MIR 40 151 -57 531 252 8 0 chrX 31166988 31167111 -131432819 + LTR16C LTR ERVL 364 487 -4 1972 107 66 38 chrX 31169429 31169794 -131430136 + THE1C LTR MaLR 1 375 0 384 303 118 7 chrX 31169891 31170043 -131429887 + MIR SINE MIR 24 192 -70 22 0 0 0 chrX 31170539 31170561 -131429369 + AT_rich Low_complexity Low_complexity 1 22 0 36 77 0 0 chrX 31170579 31170657 -131429273 + AT_rich Low_complexity Low_complexity 1 78 0 287 137 0 0 chrX 31170711 31170762 -131429168 - L1MA9 LINE L1 -39 6273 6223 1797 98 94 7 chrX 31170772 31171079 -131428851 - L1MA8 LINE L1 -279 6012 5679 586 287 21 50 chrX 31171295 31171574 -131428356 + MLT1L LTR MaLR 222 492 -123 266 262 115 107 chrX 31173593 31173845 -131426085 - L2 LINE L2 0 3272 3019 * 604 336 74 44 chrX 31173839 31174336 -131425594 - L2 LINE L2 -407 2907 2396 293 273 0 0 chrX 31174341 31174429 -131425501 - MLT1H LTR MaLR 0 549 462 394 248 16 25 chrX 31174642 31174763 -131425167 - MLT1H LTR MaLR -390 159 40 353 295 119 81 chrX 31174839 31175110 -131424820 - L2 LINE L2 -621 2693 2434 402 190 36 73 chrX 31175110 31175247 -131424683 + MER94 DNA DNA 2 133 -1 353 295 119 81 chrX 31175247 31175569 -131424361 - L2 LINE L2 -880 2434 2077 479 344 60 51 chrX 31175572 31175924 -131424006 - MLT1K LTR MaLR -51 537 183 222 366 101 39 chrX 31175925 31176280 -131423650 - L2 LINE L2 -1419 1895 1519 21 95 0 0 chrX 31177359 31177422 -131422508 + AT_rich Low_complexity Low_complexity 1 63 0 4966 176 24 5 chrX 31178460 31180060 -131419870 - L1MB1 LINE L1 0 6404 4774 839 210 111 72 chrX 31180061 31180107 -131419823 - MSTC LTR MaLR -2 426 383 2220 119 0 0 chrX 31180107 31180409 -131419521 + AluSx SINE Alu 3 304 -8 839 210 111 72 chrX 31180409 31180743 -131419187 - MSTC LTR MaLR -45 383 1 5829 241 60 62 chrX 31180743 31181388 -131418542 - MSTD-int LTR MaLR 0 1735 1090 3294 159 19 3 chrX 31181388 31181959 -131417971 - LTR22 LTR ERVK 0 580 1 5829 241 60 62 chrX 31181959 31182945 -131416985 - MSTD-int LTR MaLR -645 1090 104 2225 44 44 4 chrX 31182945 31183262 -131416668 - AluY SINE Alu 0 328 1 5829 241 60 62 chrX 31183262 31183365 -131416565 - MSTD-int LTR MaLR -1631 104 2 917 212 28 4 chrX 31183374 31183579 -131416351 - MSTD LTR MaLR -6 390 197 6099 34 1 1 chrX 31184255 31184983 -131414947 - L1PA5 LINE L1 -3 6151 5424 593 194 36 61 chrX 31184993 31185158 -131414772 - MSTD LTR MaLR -213 161 1 8304 217 70 57 chrX 31185158 31185452 -131414478 - L1MB1 LINE L1 -1581 4801 4512 2183 105 3 13 chrX 31185452 31185765 -131414165 - AluSg SINE Alu 0 310 1 8304 217 70 57 chrX 31185765 31186190 -131413740 - L1MB1 LINE L1 -1870 4512 4094 2091 187 0 3 chrX 31186190 31186553 -131413377 + MLT1A1 LTR MaLR 1 362 -3 8304 217 70 57 chrX 31186553 31188604 -131411326 - L1MB1 LINE L1 -2288 4094 2071 2510 84 0 0 chrX 31188604 31188914 -131411016 - AluSg SINE Alu 0 310 1 8304 217 70 57 chrX 31188914 31189226 -131410704 - L1MB1 LINE L1 -4311 2071 1765 2252 112 0 0 chrX 31189226 31189530 -131410400 - AluSx SINE Alu -8 304 1 8304 217 70 57 chrX 31189530 31190002 -131409928 - L1MB1 LINE L1 -4617 1765 1301 435 216 0 0 chrX 31190002 31190076 -131409854 - AluJ/FLAM SINE Alu -235 77 4 8304 217 70 57 chrX 31190076 31190426 -131409504 - L1MB1 LINE L1 -5081 1301 806 1170 118 67 15 chrX 31190427 31190622 -131409308 - MER4E-int LTR ERV1 -2106 4652 4448 * 3740 150 63 7 chrX 31190620 31191235 -131408695 - MER4E-int LTR ERV1 -2673 4085 3436 * 7930 117 78 34 chrX 31191233 31191823 -131408107 - MER4E-int LTR ERV1 -3664 3094 2531 1968 125 7 3 chrX 31191823 31192112 -131407818 - AluSx SINE Alu -22 290 1 7930 117 78 34 chrX 31192112 31193602 -131406328 - MER4E-int LTR ERV1 -4227 2531 1444 6482 111 91 25 chrX 31193613 31193695 -131406235 - MER4E-int LTR ERV1 -5590 1168 1093 321 26 0 0 chrX 31193695 31193733 -131406197 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6482 111 91 25 chrX 31193733 31194745 -131405185 - MER4E-int LTR ERV1 -5665 1093 1 5635 71 12 3 chrX 31194745 31195504 -131404426 - MER4E LTR ERV1 0 766 1 467 243 86 33 chrX 31195536 31195746 -131404184 + L1M4 LINE L1 22 242 -6300 1719 99 0 36 chrX 31195816 31196068 -131403862 - AluSx SINE Alu -16 296 54 1445 156 11 0 chrX 31196097 31196360 -131403570 + L1MA9 LINE L1 5861 6126 -186 1875 197 29 2 chrX 31196362 31196774 -131403156 + L1MB5 LINE L1 5743 6165 -9 487 175 70 0 chrX 31196801 31196915 -131403015 + L1MC4 LINE L1 7920 8041 -1 1104 289 18 6 chrX 31197146 31197485 -131402445 - LTR16C LTR ERVL 0 491 149 237 299 14 89 chrX 31197575 31197789 -131402141 - L2 LINE L2 -1914 1400 1203 183 308 47 87 chrX 31197858 31198030 -131401900 - L3 LINE CR1 -606 971 807 214 200 0 0 chrX 31198250 31198290 -131401640 + L2 LINE L2 3274 3313 0 1723 125 66 42 chrX 31198867 31199156 -131400774 + AluSx SINE Alu 1 296 -16 235 306 108 101 chrX 31199244 31199809 -131400121 - L2 LINE L2 0 3272 2688 1106 220 155 19 chrX 31199809 31199879 -131400051 - LTR52 LTR ERVL -3 418 359 423 0 0 0 chrX 31199879 31199926 -131400004 + (CA)n Simple_repeat Simple_repeat 1 47 0 1106 220 155 19 chrX 31199926 31200223 -131399707 - LTR52 LTR ERVL -62 359 1 235 306 108 101 chrX 31200223 31200596 -131399334 - L2 LINE L2 -584 2688 2319 257 250 103 15 chrX 31200768 31200904 -131399026 - L1ME4a LINE L1 0 6121 5974 29 70 0 0 chrX 31201112 31201169 -131398761 + AT_rich Low_complexity Low_complexity 1 57 0 2881 90 47 9 chrX 31201242 31201686 -131398244 - MER4C LTR ERV1 -4 461 1 2287 39 21 0 chrX 31201990 31202274 -131397656 - L1PA5 LINE L1 0 6154 5865 5067 253 53 21 chrX 31202644 31203481 -131396449 + L1M4b LINE L1 96 905 -5950 1929 143 34 3 chrX 31203481 31203775 -131396155 - AluJb SINE Alu -9 303 1 5067 253 53 21 chrX 31203775 31204608 -131395322 + L1M4b LINE L1 905 1800 -5055 9977 223 44 29 chrX 31204879 31208386 -131391544 + L1M4b LINE L1 2476 5997 -960 1460 187 76 38 chrX 31208399 31208795 -131391135 - LTR2B LTR ERV1 -46 444 34 1782 47 21 0 chrX 31208816 31209049 -131390881 - Harlequin LTR ERV1 0 6896 6659 958 35 0 0 chrX 31209049 31209163 -131390767 - L1PA5 LINE L1 -3 6151 6038 513 178 108 45 chrX 31209428 31209585 -131390345 + MER20 DNA MER1_type 53 219 0 297 391 0 27 chrX 31209629 31209739 -131390191 + L2 LINE L2 3123 3229 -43 382 337 21 11 chrX 31209832 31210019 -131389911 + LTR16C LTR ERVL 1 189 -302 431 178 10 30 chrX 31210050 31210151 -131389779 + LTR16C LTR ERVL 326 424 -67 1650 244 56 10 chrX 31210151 31210634 -131389296 + MLT1D LTR MaLR 1 505 0 2632 215 22 36 chrX 31210637 31211303 -131388627 + MLT1D-int LTR MaLR 4 660 -711 862 219 11 0 chrX 31211376 31211559 -131388371 + MLT1D-int LTR MaLR 699 883 -488 469 256 156 43 chrX 31211635 31211846 -131388084 + MLT1D-int LTR MaLR 871 1105 -266 1928 80 42 42 chrX 31212064 31212350 -131387580 - AluY SINE Alu -25 286 1 555 206 139 28 chrX 31212379 31212723 -131387207 - LTR37A LTR ERV1 -3 423 10 381 262 44 63 chrX 31214551 31214808 -131385122 + MIR SINE MIR 5 253 -9 288 268 36 27 chrX 31215076 31215188 -131384742 - MER31-int LTR ERV1 -3795 1141 1029 180 0 0 0 chrX 31215416 31215436 -131384494 + (CAA)n Simple_repeat Simple_repeat 2 21 0 391 256 66 30 chrX 31215664 31216004 -131383926 - LTR37A LTR ERV1 -3 423 3 401 155 0 21 chrX 31216861 31216958 -131382972 + GA-rich Low_complexity Low_complexity 2 96 0 434 298 117 24 chrX 31219078 31219326 -131380604 + Charlie8 DNA MER1_type 4 274 -2143 6795 211 45 9 chrX 31219351 31220963 -131378967 + MER52A LTR ERV1 9 1755 0 298 353 17 0 chrX 31221319 31221438 -131378492 - MER5C DNA MER1_type -203 121 1 187 270 63 16 chrX 31221828 31221891 -131378039 + MIR3 SINE MIR 116 181 -27 252 270 24 3 chrX 31221970 31222057 -131377873 - MIR SINE MIR -54 154 62 4252 101 21 48 chrX 31222531 31222574 -131377356 - L1MA3 LINE L1 -8 6297 6254 4668 124 28 27 chrX 31222574 31223357 -131376573 - LTR1 LTR ERV1 -1 784 1 4252 101 21 48 chrX 31223357 31224038 -131375892 - L1MA3 LINE L1 -51 6254 5593 7455 30 0 3 chrX 31224050 31225525 -131374405 - L1PA4 LINE L1 -7 6148 4675 3151 23 2 0 chrX 31225525 31225918 -131374012 + L1PA4 LINE L1 4261 4654 -1492 2316 150 1 2 chrX 31225909 31226516 -131373414 - L1MA3 LINE L1 -690 5612 5006 * 4778 109 16 3 chrX 31226516 31227253 -131372677 + L1MA2 LINE L1 5547 6301 -3 631 267 58 53 chrX 31227425 31227856 -131372074 + L1ME LINE L1 556 988 -5082 696 269 94 24 chrX 31228207 31228419 -131371511 + MIR SINE MIR 6 232 -30 446 272 121 0 chrX 31231005 31231178 -131368752 - L2 LINE L2 0 3313 3120 325 362 104 24 chrX 31231183 31231769 -131368161 + L2 LINE L2 1932 2564 -750 1028 257 12 4 chrX 31232183 31232428 -131367502 + MIR SINE MIR 5 251 -11 543 262 120 71 chrX 31233012 31233237 -131366693 - MIR SINE MIR -21 241 6 2507 44 0 10 chrX 31233528 31233826 -131366104 + AluY SINE Alu 1 295 -16 876 247 30 49 chrX 31236455 31236631 -131363299 + MIR SINE MIR 1 172 -90 3696 101 35 29 chrX 31236631 31237227 -131362703 - MER4A LTR ERV1 0 600 1 876 247 30 49 chrX 31237227 31237317 -131362613 + MIR SINE MIR 172 262 0 628 313 29 10 chrX 31237518 31237726 -131362204 - MIR SINE MIR -31 231 20 184 286 78 13 chrX 31237731 31237808 -131362122 - MER5B DNA MER1_type -6 172 91 618 148 14 49 chrX 31237810 31237952 -131361978 - L1MB7 LINE L1 0 6184 6048 188 286 89 0 chrX 31238132 31238188 -131361742 - MER5A DNA MER1_type -1 188 128 856 235 67 4 chrX 31238226 31238494 -131361436 + MER58D DNA MER1_type 101 385 -1 207 0 0 0 chrX 31239252 31239275 -131360655 + (TTG)n Simple_repeat Simple_repeat 2 24 0 300 269 69 62 chrX 31239491 31239636 -131360294 + ERVL LTR ERVL 1074 1219 -4545 209 365 56 60 chrX 31239657 31239751 -131360179 + L2 LINE L2 2012 2105 -1209 4706 71 16 61 chrX 31239751 31240442 -131359488 - PABL_A LTR ERV1 0 660 1 209 365 56 60 chrX 31240442 31240599 -131359331 + L2 LINE L2 2105 2262 -1052 420 305 17 8 chrX 31240804 31240922 -131359008 + MER5A DNA MER1_type 71 189 0 304 314 96 26 chrX 31240922 31241144 -131358786 + L2 LINE L2 2431 2668 -646 1596 164 3 21 chrX 31241787 31242113 -131357817 - AluSx SINE Alu 0 321 1 414 100 0 0 chrX 31242569 31242629 -131357301 + (TA)n Simple_repeat Simple_repeat 2 61 0 245 274 11 21 chrX 31242635 31242730 -131357200 - L1ME4a LINE L1 -193 5928 5835 482 221 27 87 chrX 31242947 31243096 -131356834 - MIR SINE MIR -13 249 110 347 294 71 16 chrX 31243570 31243696 -131356234 - L2 LINE L2 0 3272 3140 706 303 66 38 chrX 31243750 31244112 -131355818 + MLT1I LTR MaLR 6 393 -16 1125 231 87 0 chrX 31244112 31244410 -131355520 - MER5C DNA MER1_type 0 324 1 2745 156 41 6 chrX 31244476 31244962 -131354968 - MLT1D LTR MaLR -2 503 1 270 324 166 32 chrX 31245038 31245285 -131354645 - L2 LINE L2 -337 2977 2698 633 62 0 0 chrX 31246079 31246159 -131353771 - MADE1 DNA Mariner 0 80 1 367 175 113 10 chrX 31246180 31246277 -131353653 - MER103 DNA DNA -48 118 12 2410 96 13 40 chrX 31246292 31246666 -131353264 + THE1B LTR MaLR 1 364 0 678 231 138 0 chrX 31246749 31246909 -131353021 + MIR SINE MIR 12 193 -69 3941 88 32 0 chrX 31248583 31249120 -131350810 - MER41A LTR ERV1 0 554 1 11705 101 5 11 chrX 31249120 31249994 -131349936 - MER41A-int LTR ERV1 -2 5944 5083 2184 117 7 7 chrX 31249994 31250302 -131349628 - AluSq SINE Alu -5 308 1 11705 101 5 11 chrX 31250302 31251089 -131348841 - MER41A-int LTR ERV1 -863 5083 4293 425 38 0 0 chrX 31251092 31251145 -131348785 - HUERS-P1 LTR ERV1 -1887 4376 4324 * 9063 137 84 14 chrX 31251127 31253390 -131346540 - HUERS-P1 LTR ERV1 -2189 3757 1273 224 230 23 23 chrX 31254791 31254878 -131345052 + (TA)n Simple_repeat Simple_repeat 1 87 0 1722 148 28 24 chrX 31254912 31255203 -131344727 - AluJo SINE Alu -20 292 1 1044 223 73 0 chrX 31256451 31256657 -131343273 + MIR SINE MIR 42 262 0 1868 38 0 0 chrX 31257573 31257785 -131342145 + AluY SINE Alu 86 297 -14 2295 84 0 0 chrX 31257793 31258080 -131341850 + AluSc SINE Alu 1 287 -22 2313 83 0 0 chrX 31258202 31258490 -131341440 + AluSx SINE Alu 1 288 -24 22 35 0 0 chrX 31258490 31258519 -131341411 + AT_rich Low_complexity Low_complexity 1 29 0 673 325 41 4 chrX 31258868 31259114 -131340816 + MIR SINE MIR 7 261 -1 1212 217 81 4 chrX 31259322 31259594 -131340336 + LTR16A1 LTR ERVL 165 457 0 432 0 0 0 chrX 31259967 31260015 -131339915 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1756 225 121 5 chrX 31260015 31260428 -131339502 - MLT2B1 LTR ERVL -59 461 1 33 56 0 0 chrX 31262012 31262066 -131337864 + AT_rich Low_complexity Low_complexity 1 54 0 2369 71 3 0 chrX 31262072 31262366 -131337564 + AluY SINE Alu 1 295 -16 5436 93 25 1 chrX 31262368 31263155 -131336775 - L1MA1 LINE L1 0 6302 5497 846 174 0 0 chrX 31264010 31264182 -131335748 - L1MA4 LINE L1 -2 6298 6127 228 241 35 14 chrX 31264250 31264391 -131335539 + (TA)n Simple_repeat Simple_repeat 1 144 0 871 240 6 0 chrX 31264439 31264610 -131335320 + MER8 DNA MER2_type 10 181 -58 372 164 0 0 chrX 31264653 31264708 -131335222 - Tigger2 DNA MER2_type -2658 60 6 323 236 11 71 chrX 31265409 31265591 -131334339 - L1ME4a LINE L1 -21 6100 5930 377 219 124 39 chrX 31265743 31265824 -131334106 - L1ME4a LINE L1 -75 6046 5973 441 95 0 0 chrX 31265824 31265887 -131334043 + (TA)n Simple_repeat Simple_repeat 1 63 0 377 219 124 39 chrX 31265887 31266038 -131333892 - L1ME4a LINE L1 -148 5973 5794 448 290 69 0 chrX 31267200 31267345 -131332585 - LTR16C LTR ERVL 0 491 337 216 0 0 0 chrX 31267640 31267664 -131332266 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 428 293 95 14 chrX 31268265 31268412 -131331518 + MIR SINE MIR 20 178 -84 2487 106 28 14 chrX 31268432 31268791 -131331139 - THE1B LTR MaLR 0 364 1 11519 87 20 8 chrX 31268791 31270083 -131329847 - THE1B-int LTR MaLR 0 1580 265 2418 81 0 0 chrX 31270083 31270380 -131329550 + AluY SINE Alu 1 297 -14 11519 87 20 8 chrX 31270380 31270649 -131329281 - THE1B-int LTR MaLR -1315 265 1 2101 121 53 36 chrX 31270651 31271007 -131328923 - THE1B LTR MaLR -2 362 1 1186 276 90 28 chrX 31271506 31271963 -131327967 - MLT1J LTR MaLR -15 496 12 637 248 41 89 chrX 31271980 31272226 -131327704 - MIR SINE MIR -26 236 3 185 343 0 69 chrX 31272720 31272822 -131327108 - L2 LINE L2 -231 3082 2988 1302 263 68 11 chrX 31272845 31273226 -131326704 - MLT1I LTR MaLR -2 407 5 710 341 58 30 chrX 31273247 31273646 -131326284 - L2 LINE L2 -337 2977 2568 24 0 0 0 chrX 31273680 31273704 -131326226 + AT_rich Low_complexity Low_complexity 1 24 0 215 240 20 0 chrX 31273786 31273836 -131326094 + CT-rich Low_complexity Low_complexity 3 53 0 316 357 35 0 chrX 31274180 31274323 -131325607 - L2 LINE L2 -2456 858 711 337 119 0 51 chrX 31274376 31274435 -131325495 - MLT1D LTR MaLR 0 505 450 264 280 68 45 chrX 31274483 31274615 -131325315 + L2 LINE L2 3179 3313 0 758 273 0 6 chrX 31275092 31275264 -131324666 + MER5B DNA MER1_type 1 171 -7 545 219 180 8 chrX 31275296 31275424 -131324506 - MER5A DNA MER1_type -30 159 10 658 295 45 5 chrX 31275486 31275686 -131324244 - MIR SINE MIR -29 233 26 293 143 0 0 chrX 31275754 31275796 -131324134 + 5S rRNA rRNA 1 42 -79 240 35 0 0 chrX 31276762 31276791 -131323139 + (TG)n Simple_repeat Simple_repeat 1 29 0 300 70 0 0 chrX 31276791 31276834 -131323096 + (GA)n Simple_repeat Simple_repeat 2 44 0 1587 158 55 4 chrX 31276922 31277195 -131322735 - AluJo SINE Alu -25 287 1 7205 123 10 35 chrX 31278005 31279776 -131320154 - L1MA3 LINE L1 -6 6299 4562 752 293 9 24 chrX 31279984 31280322 -131319608 - L1M4 LINE L1 -852 5294 4962 379 318 5 14 chrX 31280341 31280558 -131319372 - L1MDa LINE L1 -3459 3081 2867 * 1073 329 61 11 chrX 31280552 31281526 -131318404 - L1MEc LINE L1 -4579 1817 796 222 37 0 0 chrX 31281874 31281901 -131318029 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 244 247 104 0 chrX 31282460 31282537 -131317393 + MLT1J2 LTR MaLR 366 450 0 597 238 88 19 chrX 31282565 31282725 -131317205 + L2 LINE L2 3143 3313 0 180 234 0 0 chrX 31282727 31282774 -131317156 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 2169 136 0 7 chrX 31284139 31284448 -131315482 - AluSx SINE Alu -5 307 1 2242 255 17 25 chrX 31284741 31285345 -131314585 + MER90 LTR ERV1 1 599 -15 398 245 98 8 chrX 31285808 31286042 -131313888 - L1ME3A LINE L1 -214 5950 5686 222 37 0 0 chrX 31286246 31286273 -131313657 + (TG)n Simple_repeat Simple_repeat 2 28 0 269 286 13 0 chrX 31286280 31286357 -131313573 - MER112 DNA MER1_type -175 85 8 874 329 8 0 chrX 31286376 31286747 -131313183 - L1ME3A LINE L1 -521 5643 5270 581 237 29 6 chrX 31286745 31286918 -131313012 - L1MDa LINE L1 -3749 2791 2615 * 212 204 29 48 chrX 31286931 31287034 -131312896 + (TA)n Simple_repeat Simple_repeat 2 102 0 672 270 75 15 chrX 31287528 31287861 -131312069 - L1MDa LINE L1 -4540 2000 1648 404 283 10 0 chrX 31287893 31287992 -131311938 + L2 LINE L2 3203 3302 -11 2260 107 0 0 chrX 31287996 31288287 -131311643 + AluSx SINE Alu 1 291 -21 589 311 47 0 chrX 31288999 31289192 -131310738 + MIR SINE MIR 55 256 -6 1449 177 17 100 chrX 31289694 31289857 -131310073 - MER58B DNA MER1_type -2095 325 205 5498 109 35 9 chrX 31289857 31291106 -131308824 + L1PA16 LINE L1 4882 6157 -9 1449 177 17 100 chrX 31291106 31291292 -131308638 - MER58B DNA MER1_type -2215 205 5 1743 218 70 53 chrX 31291394 31291922 -131308008 - MLT1E2 LTR MaLR -2 624 88 356 277 34 20 chrX 31291818 31291966 -131307964 - MLT2C1 LTR ERVL -200 197 48 * 309 149 253 23 chrX 31293079 31293166 -131306764 - L2 LINE L2 0 3313 3207 233 308 62 39 chrX 31293236 31293366 -131306564 - L2 LINE L2 -2 3270 3138 199 365 71 34 chrX 31293513 31293751 -131306179 + L2 LINE L2 2474 2720 -594 874 248 62 29 chrX 31293847 31294089 -131305841 + MIR SINE MIR 13 262 0 419 236 36 0 chrX 31294803 31294913 -131305017 + MER20B DNA MER1_type 35 148 -635 715 192 0 23 chrX 31296597 31296727 -131303203 - FLAM_A SINE Alu -4 129 3 195 341 70 31 chrX 31297069 31297084 -131302846 + L2 LINE L2 3137 3150 -122 300 53 0 0 chrX 31297084 31297122 -131302808 + (CA)n Simple_repeat Simple_repeat 2 39 0 195 341 70 31 chrX 31297122 31297235 -131302695 + L2 LINE L2 3150 3270 -2 284 260 78 0 chrX 31297263 31297340 -131302590 - LTR50 LTR ERVL -698 97 15 428 300 17 0 chrX 31298223 31298343 -131301587 - L2 LINE L2 -2 3311 3190 30 0 0 0 chrX 31299244 31299274 -131300656 + AT_rich Low_complexity Low_complexity 1 30 0 977 177 13 13 chrX 31300062 31300220 -131299710 + FRAM SINE Alu 1 155 -21 2514 72 0 0 chrX 31300432 31300738 -131299192 - AluY SINE Alu -5 306 1 782 258 43 85 chrX 31301760 31302049 -131297881 - LTR16A1 LTR ERVL -3 454 190 680 150 83 33 chrX 31302049 31302229 -131297701 + MER53 DNA DNA 1 189 0 782 258 43 85 chrX 31302229 31302400 -131297530 - LTR16A1 LTR ERVL -267 190 13 1520 285 42 11 chrX 31303694 31304167 -131295763 - LTR16C LTR ERVL -3 488 1 368 348 62 14 chrX 31304832 31305108 -131294822 - L2 LINE L2 -180 3092 2804 327 25 0 0 chrX 31305953 31305993 -131293937 + (TG)n Simple_repeat Simple_repeat 1 40 0 4569 149 95 28 chrX 31306004 31306875 -131293055 + MER21A LTR ERV1 1 930 -1 1603 200 30 0 chrX 31306886 31307216 -131292714 - MER58B DNA MER1_type 0 341 2 783 229 11 0 chrX 31307402 31307577 -131292353 - MER5B DNA MER1_type 0 178 2 2325 175 43 7 chrX 31308094 31308540 -131291390 - LTR32 LTR ERVL 0 471 10 215 216 0 39 chrX 31310066 31310117 -131289813 + (TATG)n Simple_repeat Simple_repeat 1 49 0 185 314 32 40 chrX 31310120 31310244 -131289686 + MIR SINE MIR 101 223 -39 251 299 65 19 chrX 31310932 31311039 -131288891 - L2 LINE L2 -15 3298 3187 1528 141 188 16 chrX 31311792 31312111 -131287819 - THE1C LTR MaLR -1 374 1 221 217 0 0 chrX 31312791 31312837 -131287093 - L2 LINE L2 -5 3267 3222 281 221 52 39 chrX 31312842 31312919 -131287011 - L2 LINE L2 -292 3021 2944 1204 297 59 0 chrX 31313038 31313428 -131286502 - L2 LINE L2 -362 2952 2540 2348 190 17 70 chrX 31314386 31314971 -131284959 - MLT2B3 LTR ERVL 0 554 1 247 349 0 0 chrX 31318831 31318914 -131281016 + MIR3 SINE MIR 118 200 -8 396 299 71 63 chrX 31319072 31319459 -131280471 + L1MB7 LINE L1 3497 3883 -2263 3903 208 54 18 chrX 31319459 31321349 -131278581 + L1MB7 LINE L1 4212 6173 -11 266 227 34 11 chrX 31321385 31321473 -131278457 + L1MC5 LINE L1 7830 7919 -42 3709 170 20 5 chrX 31321634 31322374 -131277556 - L1 LINE L1 -1868 4278 3528 1309 241 36 87 chrX 31322427 31322448 -131277482 + L1ME3 LINE L1 5288 5309 -853 1056 171 78 0 chrX 31322448 31322641 -131277289 - MER6B DNA MER2_type 0 210 3 1309 241 36 87 chrX 31322641 31323319 -131276611 + L1ME3 LINE L1 5309 5951 -211 300 200 0 0 chrX 31323808 31323873 -131276057 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 220 291 114 13 chrX 31324199 31324278 -131275652 - MIR SINE MIR -156 106 20 326 330 53 34 chrX 31324820 31325084 -131274846 + L2 LINE L2 2538 2806 -508 191 283 0 0 chrX 31325813 31325859 -131274071 + MIR SINE MIR 108 153 -55 181 306 20 0 chrX 31325878 31325927 -131274003 + MER5A DNA MER1_type 4 53 -136 2461 229 22 21 chrX 31325927 31326509 -131273421 - MER119 DNA MER1_type 0 583 1 224 239 0 0 chrX 31326510 31326556 -131273374 + MER5A DNA MER1_type 47 92 -97 384 188 12 0 chrX 31327027 31327107 -131272823 - Tigger7 DNA MER2_type 0 2487 2407 1374 183 14 46 chrX 31327124 31327408 -131272522 - Tigger7 DNA MER2_type -2080 407 133 1752 138 3 21 chrX 31327408 31327764 -131272166 - MER4A LTR ERV1 0 664 257 473 155 21 10 chrX 31327760 31327857 -131272073 - MER4A LTR ERV1 -566 98 1 * 863 151 14 0 chrX 31327857 31327991 -131271939 - Tigger7 DNA MER2_type -568 137 2 1960 165 114 7 chrX 31329412 31329881 -131270049 - MER68 LTR ERV1 0 562 1 697 278 34 19 chrX 31330388 31330593 -131269337 - MIR SINE MIR -51 211 4 21 36 0 0 chrX 31332883 31332911 -131267019 + AT_rich Low_complexity Low_complexity 1 28 0 545 333 63 0 chrX 31333368 31333605 -131266325 + MIR SINE MIR 10 261 -1 272 299 106 69 chrX 31333607 31334012 -131265918 - MLT1K LTR MaLR -1 587 168 464 298 111 15 chrX 31334458 31334720 -131265210 + LTR16A1 LTR ERVL 163 449 -8 343 328 40 33 chrX 31335918 31336247 -131263683 + LTR16C LTR ERVL 72 402 -89 3524 141 17 33 chrX 31336726 31337381 -131262549 - L1MA8 LINE L1 -5 6286 5622 2819 10 0 0 chrX 31337381 31337689 -131262241 + AluY SINE Alu 1 308 -3 3524 141 17 33 chrX 31337689 31338515 -131261415 - L1MA8 LINE L1 -669 5622 4748 276 290 114 38 chrX 31339123 31339254 -131260676 + L2 LINE L2 3132 3272 0 990 250 97 77 chrX 31339678 31340222 -131259708 - MLT1H1 LTR MaLR 0 555 1 656 204 7 0 chrX 31340792 31340934 -131258996 - L1MD1 LINE L1 -2 6240 6098 1080 180 0 0 chrX 31340934 31341101 -131258829 - FRAM SINE Alu -13 163 1 420 143 0 0 chrX 31341101 31341171 -131258759 + (TA)n Simple_repeat Simple_repeat 2 71 0 889 120 0 0 chrX 31341175 31341292 -131258638 - FLAM_C SINE Alu -26 117 1 3628 154 21 24 chrX 31341292 31342005 -131257925 - L1MD2 LINE L1 -138 6221 5511 2594 131 32 0 chrX 31343084 31343495 -131256435 - MSTA LTR MaLR 0 428 5 355 227 282 9 chrX 31343566 31343676 -131256254 + MIR SINE MIR 83 222 -40 207 237 165 10 chrX 31345051 31345148 -131254782 - L2 LINE L2 -1 3312 3201 1999 110 55 14 chrX 31345316 31345607 -131254323 - AluSq SINE Alu -10 303 1 959 209 94 44 chrX 31346097 31346538 -131253392 - MLT1J LTR MaLR 0 511 5 180 322 111 0 chrX 31346649 31346739 -131253191 + L2 LINE L2 3180 3279 -34 870 340 21 21 chrX 31346763 31347098 -131252832 - LTR16C LTR ERVL -59 432 98 366 326 39 0 chrX 31349460 31349589 -131250341 + MER94 DNA DNA 1 134 0 240 217 0 0 chrX 31350108 31350154 -131249776 - MLT1I LTR MaLR -266 143 98 428 330 85 6 chrX 31350294 31350470 -131249460 - MIR3 SINE MIR 0 208 19 38 39 0 0 chrX 31351087 31351139 -131248791 + AT_rich Low_complexity Low_complexity 1 52 0 346 236 22 0 chrX 31351429 31351518 -131248412 - L1MC4a LINE L1 -1959 5849 5759 306 306 149 0 chrX 31351635 31351769 -131248161 + L1MC/D LINE L1 5618 5771 -2037 1166 321 79 25 chrX 31351770 31352402 -131247528 + L2 LINE L2 2030 2695 -619 237 289 53 18 chrX 31352415 31352529 -131247401 - L1MC4 LINE L1 -3 8039 7922 530 308 147 42 chrX 31352558 31353076 -131246854 + L2 LINE L2 2729 3312 -1 328 274 27 0 chrX 31353088 31353200 -131246730 - MIR3 SINE MIR -6 202 87 1353 158 22 0 chrX 31353244 31353472 -131246458 + L1MA6 LINE L1 6068 6300 0 2482 50 0 17 chrX 31354020 31354317 -131245613 - AluY SINE Alu -19 292 1 257 284 88 54 chrX 31354681 31354829 -131245101 + MER5A DNA MER1_type 37 189 0 369 375 31 5 chrX 31354960 31355154 -131244776 + MIR SINE MIR 15 212 -50 220 175 0 35 chrX 31356050 31356107 -131243823 + T-rich Low_complexity Low_complexity 5 59 0 2675 139 85 4 chrX 31357499 31357980 -131241950 - L1MC2 LINE L1 -11 6333 5814 399 123 55 0 chrX 31357980 31358049 -131241881 - L1MB1 LINE L1 0 6168 6092 260 102 20 0 chrX 31358100 31358149 -131241781 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 2000 108 11 4 chrX 31358417 31358694 -131241236 - L1PA15 LINE L1 -4 6161 5883 222 176 0 0 chrX 31358970 31359004 -131240926 - MIR SINE MIR -11 251 218 282 175 35 0 chrX 31359050 31359107 -131240823 - MIR SINE MIR -141 121 63 424 253 0 0 chrX 31359218 31359317 -131240613 + MER5A DNA MER1_type 8 106 -83 459 0 0 0 chrX 31359549 31359600 -131240330 + (TG)n Simple_repeat Simple_repeat 2 52 0 625 301 29 6 chrX 31359986 31360159 -131239771 + MIR3 SINE MIR 21 197 -11 356 188 0 14 chrX 31360192 31360261 -131239669 - HsTC2 DNA Tc2 -20 1878 1811 1629 280 72 14 chrX 31360281 31360770 -131239160 + LTR33 LTR ERVL 5 521 0 284 247 26 39 chrX 31361408 31361485 -131238445 - MER5C DNA MER1_type -248 76 1 837 219 6 0 chrX 31362254 31362423 -131237507 + MER5B DNA MER1_type 1 170 -8 1267 80 6 0 chrX 31362675 31362837 -131237093 - L1PA10 LINE L1 -1 6167 6005 717 214 316 19 chrX 31363154 31363420 -131236510 + Charlie1a DNA MER1_type 11 355 -1100 4592 177 55 3 chrX 31363451 31363997 -131235933 + Charlie1a DNA MER1_type 483 1092 -1669 330 115 0 0 chrX 31363997 31364049 -131235881 + (TG)n Simple_repeat Simple_repeat 1 52 0 4592 177 55 3 chrX 31364049 31364374 -131235556 + Charlie1a DNA MER1_type 1092 1399 -56 756 295 39 50 chrX 31364692 31365153 -131234777 - L1ME LINE L1 -5597 473 18 1774 183 0 10 chrX 31365398 31365699 -131234231 - AluJo SINE Alu -14 298 1 753 125 0 0 chrX 31365715 31365827 -131234103 + L1M2 LINE L1 5658 5769 -531 405 0 0 0 chrX 31366326 31366371 -131233559 + (CA)n Simple_repeat Simple_repeat 2 46 0 2611 160 11 40 chrX 31366392 31366837 -131233093 - MSTB1 LTR MaLR 0 432 1 1068 47 0 0 chrX 31367348 31367477 -131232453 - AluY SINE Alu -12 299 171 212 368 40 23 chrX 31367509 31367683 -131232247 + L2 LINE L2 1035 1211 -2103 4387 123 34 8 chrX 31368074 31368387 -131231543 + L1PB4 LINE L1 5470 5773 -383 243 0 0 0 chrX 31368387 31368414 -131231516 + (CA)n Simple_repeat Simple_repeat 2 28 0 4387 123 34 8 chrX 31368414 31368769 -131231161 + L1PB4 LINE L1 5773 6156 0 2808 200 15 10 chrX 31368823 31369344 -131230586 + MLT1F LTR MaLR 7 530 -12 248 169 200 15 chrX 31369522 31369587 -131230343 + L1ME LINE L1 12 88 -5982 204 125 0 0 chrX 31369587 31369619 -131230311 + (TA)n Simple_repeat Simple_repeat 1 32 0 322 241 0 0 chrX 31369620 31369699 -131230231 + L1MC4 LINE L1 6614 6692 -1350 1204 89 0 6 chrX 31370187 31370344 -131229586 - L1PB1 LINE L1 0 6151 5996 3247 186 83 11 chrX 31370759 31371399 -131228531 + MER76 LTR ERV 1 686 -2 490 196 209 26 chrX 31372216 31372369 -131227561 + MER5A DNA MER1_type 9 189 0 1275 150 13 44 chrX 31372559 31372785 -131227145 + MER20 DNA MER1_type 1 219 0 677 183 57 80 chrX 31374605 31374780 -131225150 + MER5A DNA MER1_type 17 187 -2 183 80 0 0 chrX 31374932 31374957 -131224973 + (CA)n Simple_repeat Simple_repeat 2 26 0 223 163 23 23 chrX 31375240 31375283 -131224647 - L2 LINE L2 -23 3249 3207 327 104 0 0 chrX 31375458 31375506 -131224424 + (T)n Simple_repeat Simple_repeat 1 48 0 505 287 57 29 chrX 31375701 31375966 -131223964 + MLT1J2 LTR MaLR 17 285 -124 685 262 110 5 chrX 31377662 31377853 -131222077 - MER58A DNA MER1_type -8 216 6 826 159 129 29 chrX 31378503 31378673 -131221257 - MER5A DNA MER1_type -1 188 2 485 218 0 0 chrX 31379297 31379383 -131220547 - LTR16C LTR ERVL -21 470 385 2679 159 19 47 chrX 31379383 31379897 -131220033 - MLT1D LTR MaLR 0 505 6 1178 243 93 27 chrX 31379898 31380264 -131219666 - LTR16C LTR ERVL -98 393 4 443 180 80 30 chrX 31380652 31380752 -131219178 - L2 LINE L2 0 3272 3168 1219 131 56 49 chrX 31380795 31380877 -131219053 - MER33 DNA MER1_type -2262 323 243 2170 96 0 0 chrX 31380877 31381185 -131218745 + AluY SINE Alu 1 308 0 1219 131 56 49 chrX 31381185 31381368 -131218562 - MER33 DNA MER1_type -2342 243 55 371 215 37 37 chrX 31381673 31381780 -131218150 - MIR SINE MIR -32 230 124 197 329 29 0 chrX 31382564 31382634 -131217296 - MIR3 SINE MIR -33 175 104 791 151 44 63 chrX 31383811 31383970 -131215960 - MIR SINE MIR -30 232 77 2222 118 0 0 chrX 31384711 31385016 -131214914 + AluSx SINE Alu 2 306 -6 228 321 49 0 chrX 31385170 31385251 -131214679 - L2 LINE L2 -15 3257 3173 694 61 0 51 chrX 31386266 31386319 -131213611 - L1MA2 LINE L1 0 6304 6257 2308 103 0 7 chrX 31386319 31386621 -131213309 - AluSx SINE Alu -12 300 1 694 61 0 51 chrX 31386621 31386665 -131213265 - L1MA2 LINE L1 -47 6257 6212 445 262 234 7 chrX 31386688 31386829 -131213101 - L2 LINE L2 -5 3308 3136 458 269 28 9 chrX 31387731 31387839 -131212091 - MIR3 SINE MIR -53 155 46 371 181 0 14 chrX 31388607 31388679 -131211251 - HsTC2 DNA Tc2 -1824 74 4 281 317 41 28 chrX 31389213 31389358 -131210572 - MIR SINE MIR 0 262 116 1850 142 35 3 chrX 31389948 31390107 -131209823 - AluJb SINE Alu -21 291 118 222 37 0 0 chrX 31390107 31390134 -131209796 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1850 142 35 3 chrX 31390134 31390256 -131209674 - AluJb SINE Alu -194 118 1 716 292 111 46 chrX 31390357 31390772 -131209158 + MLT1H1 LTR MaLR 109 550 -5 739 160 0 0 chrX 31391050 31391156 -131208774 + FLAM_A SINE Alu 1 106 -36 287 128 0 0 chrX 31391156 31391195 -131208735 + FLAM_A SINE Alu 82 120 -13 35 0 0 0 chrX 31391689 31391724 -131208206 + AT_rich Low_complexity Low_complexity 1 35 0 299 243 93 77 chrX 31593377 31593459 -131006471 + MIR SINE MIR 3 65 -143 1887 81 0 4 chrX 31593459 31593705 -131006225 - AluY SINE Alu -32 279 35 299 243 93 77 chrX 31593705 31593787 -131006143 + MIR SINE MIR 65 144 -64 473 302 173 24 chrX 31593793 31594373 -131005557 - L2 LINE L2 0 3313 2635 403 328 131 10 chrX 31595857 31596171 -131003759 - L2 LINE L2 -858 2456 2105 5600 228 41 52 chrX 31596847 31598543 -131001387 - L1MA7 LINE L1 -3 6288 4628 1885 180 0 3 chrX 31598543 31598854 -131001076 - AluJb SINE Alu -2 310 1 5600 228 41 52 chrX 31598854 31599431 -131000499 - L1MA7 LINE L1 -1663 4628 4046 847 208 7 7 chrX 31599435 31599584 -131000346 + AluJb SINE Alu 107 255 -57 1146 191 5 0 chrX 31599586 31599796 -131000134 - L1MA7 LINE L1 -2113 4033 3823 1726 206 11 55 chrX 31599796 31600253 -130999677 + L1MA9 LINE L1 5842 6278 -34 28 0 0 0 chrX 31600253 31600281 -130999649 + AT_rich Low_complexity Low_complexity 1 28 0 240 243 0 57 chrX 31600570 31600640 -130999290 - L1M4b LINE L1 -6052 807 742 7501 198 35 8 chrX 31600647 31602054 -130997876 + L1M1 LINE L1 17 1461 -6104 1952 136 60 24 chrX 31602228 31602559 -130997371 - MER61A LTR ERV1 0 343 1 2388 93 16 10 chrX 31602559 31603185 -130996745 - MER61A-int LTR ERV1 0 5217 4543 1098 138 0 0 chrX 31603188 31603348 -130996582 + AluSg/x SINE Alu 141 300 -12 11295 96 32 14 chrX 31603348 31604943 -130994987 - MER61-int LTR ERV1 -245 4972 3349 1408 232 26 12 chrX 31604943 31605307 -130994623 - L1MA7 LINE L1 -2776 3370 2998 2135 186 41 3 chrX 31605307 31605695 -130994235 + MER57A LTR ERV1 1 403 0 1408 232 26 12 chrX 31605695 31605756 -130994174 - L1MA7 LINE L1 -3148 2998 2939 445 232 0 15 chrX 31605742 31605877 -130994053 - L1M4c LINE L1 -3886 2086 2017 * 860 294 43 60 chrX 31605922 31606575 -130993355 - L1M4c LINE L1 -4488 1484 843 2033 247 76 32 chrX 31606701 31607590 -130992340 - L1M4c LINE L1 -4518 1785 777 261 295 45 64 chrX 31607734 31607890 -130992040 - L1M4c LINE L1 -5216 675 523 960 297 51 39 chrX 31607992 31608382 -130991548 - L1M4c LINE L1 -5496 395 1 271 248 57 38 chrX 31608386 31608491 -130991439 + MLT1J LTR MaLR 405 511 0 183 333 26 13 chrX 31608491 31608569 -130991361 + L3 LINE CR1 1497 1575 -2 313 331 100 0 chrX 31610104 31610234 -130989696 - MIR SINE MIR -21 241 99 352 271 181 8 chrX 31610236 31610369 -130989561 - MLT1K LTR MaLR 0 588 433 211 274 0 0 chrX 31610375 31610448 -130989482 + T-rich Low_complexity Low_complexity 1 73 0 420 306 24 0 chrX 31610474 31610598 -130989332 - MLT1K LTR MaLR -163 425 299 283 376 18 18 chrX 31610628 31610793 -130989137 - MLT1K LTR MaLR -404 184 20 299 354 105 31 chrX 31611070 31611395 -130988535 + L2 LINE L2 2407 2755 -559 250 296 23 23 chrX 31611404 31611492 -130988438 + MIR3 SINE MIR 108 195 -13 642 244 6 39 chrX 31612630 31612810 -130987120 - L2 LINE L2 -10 3303 3130 1042 254 96 77 chrX 31613708 31614240 -130985690 - MLT1G LTR MaLR -6 561 10 270 136 0 0 chrX 31614540 31614584 -130985346 + (TAG)n Simple_repeat Simple_repeat 2 45 0 290 262 29 39 chrX 31614587 31614690 -130985240 - L2 LINE L2 -44 3269 3168 622 291 162 8 chrX 31614749 31614996 -130984934 + MLT1H LTR MaLR 35 319 -230 310 297 99 10 chrX 31615612 31615713 -130984217 + L2 LINE L2 3137 3246 -26 661 213 144 12 chrX 31616144 31616304 -130983626 - MER5A DNA MER1_type 0 189 9 23 0 0 0 chrX 31618202 31618225 -130981705 + AT_rich Low_complexity Low_complexity 1 23 0 201 94 0 0 chrX 31618774 31618806 -130981124 + (CAA)n Simple_repeat Simple_repeat 1 32 0 191 240 60 0 chrX 31619159 31619209 -130980721 + L2 LINE L2 3261 3313 0 * 596 294 136 6 chrX 31619207 31619569 -130980361 + L2 LINE L2 2592 2974 -340 962 234 88 15 chrX 31619673 31619947 -130979983 - Charlie4a DNA MER1_type -163 345 52 260 175 0 0 chrX 31619991 31620031 -130979899 + L2 LINE L2 3251 3290 -23 657 290 85 5 chrX 31620234 31620458 -130979472 - MLT1L LTR MaLR -13 602 361 231 236 28 28 chrX 31620601 31620673 -130979257 - MLT1J LTR MaLR -345 166 95 25 31 0 0 chrX 31621046 31621078 -130978852 + AT_rich Low_complexity Low_complexity 1 32 0 441 220 143 36 chrX 31621134 31621357 -130978573 - L1MC4a LINE L1 -1881 5927 5681 632 144 21 0 chrX 31621364 31621461 -130978469 - Tigger7 DNA MER2_type 0 2587 2489 209 250 18 0 chrX 31621534 31621590 -130978340 + (TA)n Simple_repeat Simple_repeat 1 57 0 545 285 92 19 chrX 31621602 31621809 -130978121 - L1MC4a LINE L1 -2143 5665 5444 214 261 62 0 chrX 31622136 31622201 -130977729 - MIR SINE MIR 0 262 194 2369 111 16 40 chrX 31622247 31622627 -130977303 - L1MA7 LINE L1 -2 6289 5919 685 266 6 12 chrX 31622627 31622800 -130977130 - MIR SINE MIR -72 190 19 394 291 171 0 chrX 31622804 31622962 -130976968 - MER5A DNA MER1_type -2 187 3 22 0 0 0 chrX 31623443 31623465 -130976465 + AT_rich Low_complexity Low_complexity 1 22 0 466 327 48 19 chrX 31624886 31625094 -130974836 + MIR SINE MIR 1 214 -48 290 251 42 90 chrX 31625155 31625322 -130974608 - HAL1 LINE L1 -1743 764 606 21 0 0 0 chrX 31626397 31626418 -130973512 + AT_rich Low_complexity Low_complexity 1 21 0 709 191 107 24 chrX 31626426 31626594 -130973336 - MER5A DNA MER1_type -1 188 7 491 182 10 63 chrX 31626717 31626852 -130973078 - MIR SINE MIR -25 237 38 460 236 50 29 chrX 31627097 31627237 -130972693 + HAL1 LINE L1 272 414 -2093 660 299 5 19 chrX 31627239 31627446 -130972484 - LTR16A1 LTR ERVL -1 456 253 1818 323 117 59 chrX 31627710 31629059 -130970871 + HAL1 LINE L1 420 1846 -661 777 263 64 29 chrX 31629114 31629460 -130970470 + HAL1 LINE L1 2149 2506 -1 414 307 7 40 chrX 31630078 31630228 -130969702 - MIR SINE MIR -48 214 70 1606 250 133 28 chrX 31631361 31631782 -130968148 - L1M4c LINE L1 -4473 2484 2109 2292 106 3 0 chrX 31631782 31632085 -130967845 - AluSx SINE Alu -8 304 1 1606 250 133 28 chrX 31632085 31632733 -130967197 - L1M4c LINE L1 -4848 2109 1262 405 200 12 0 chrX 31632811 31632896 -130967034 - MLT1B LTR MaLR -256 134 49 269 299 103 55 chrX 31632896 31633167 -130966763 - L1M4c LINE L1 -5796 1059 776 453 223 95 8 chrX 31633295 31633501 -130966429 - L1M4c LINE L1 -6371 484 11 21 57 0 0 chrX 31634146 31634181 -130965749 + AT_rich Low_complexity Low_complexity 1 35 0 2331 100 0 3 chrX 31634690 31634990 -130964940 + AluSx SINE Alu 1 299 -13 1670 173 7 24 chrX 31635000 31635289 -130964641 + AluJb SINE Alu 1 284 -28 25 65 0 0 chrX 31635656 31635702 -130964228 + GC_rich Low_complexity Low_complexity 1 46 0 350 258 128 97 chrX 31635731 31636153 -130963777 - L1M4b LINE L1 -5617 1341 907 21 82 0 0 chrX 31638423 31638472 -130961458 + AT_rich Low_complexity Low_complexity 1 49 0 463 153 0 0 chrX 31639108 31639180 -130960750 - AluSp/q SINE Alu -13 300 229 2096 57 0 0 chrX 31639299 31639572 -130960358 - AluY SINE Alu 0 311 39 12628 158 99 13 chrX 31639573 31643865 -130956065 + L1MA2 LINE L1 1449 6391 -1332 2229 122 6 0 chrX 31643865 31644176 -130955754 - AluSq SINE Alu 0 313 1 12628 158 99 13 chrX 31644176 31645635 -130954295 + L1MA2 LINE L1 6391 7723 0 2004 266 45 12 chrX 31645731 31646290 -130953640 - L1M4b LINE L1 -6273 586 10 364 303 92 15 chrX 31647138 31647333 -130952597 - L2 LINE L2 -622 2692 2483 297 294 63 7 chrX 31647333 31647476 -130952454 - L2 LINE L2 -1066 2248 2098 876 259 32 0 chrX 31648372 31648588 -130951342 + MIR SINE MIR 40 262 0 571 181 52 9 chrX 31649171 31649287 -130950643 + MER5B DNA MER1_type 1 121 -57 487 273 149 0 chrX 31649311 31649472 -130950458 + MER5A DNA MER1_type 4 188 -1 324 169 28 14 chrX 31649519 31649590 -130950340 + MLT1A2 LTR MaLR 1 72 -302 1465 242 32 64 chrX 31649662 31650195 -130949735 - LTR8 LTR ERV1 0 691 176 257 203 0 0 chrX 31650198 31650257 -130949673 + MLT1A2-int LTR MaLR 1677 1735 0 392 217 22 11 chrX 31650257 31650349 -130949581 + MLT1A2 LTR MaLR 1 93 -281 2052 197 20 0 chrX 31650508 31650904 -130949026 - LTR57 LTR ERVL -7 404 1 841 199 72 82 chrX 31650904 31651195 -130948735 + MLT1A2 LTR MaLR 80 367 -7 258 95 0 0 chrX 31651361 31651403 -130948527 + (CA)n Simple_repeat Simple_repeat 1 42 0 711 265 21 0 chrX 31651446 31651635 -130948295 + MER58A DNA MER1_type 1 193 -31 1202 155 63 14 chrX 31652408 31652692 -130947238 + L1MA9 LINE L1 6014 6311 -1 383 340 97 11 chrX 31652727 31652912 -130947018 - MIR SINE MIR -4 258 58 246 32 0 0 chrX 31653073 31653104 -130946826 + (TG)n Simple_repeat Simple_repeat 2 32 0 201 182 0 23 chrX 31653115 31653159 -130946771 - MIR3 SINE MIR -156 52 10 251 254 70 0 chrX 31653531 31653602 -130946328 - ERVL LTR ERVL -2282 3482 3407 237 68 17 68 chrX 31653662 31653721 -130946209 + (TTTTTG)n Simple_repeat Simple_repeat 1 56 0 1713 118 8 12 chrX 31653738 31653984 -130945946 - AluSq SINE Alu -32 281 37 385 221 0 0 chrX 31654165 31654260 -130945670 + L1M4c LINE L1 1463 1557 -4827 1918 186 75 2 chrX 31654260 31654659 -130945271 - MSTA LTR MaLR 0 428 1 4434 174 40 16 chrX 31654659 31655549 -130944381 - MSTA-int LTR MaLR 0 1651 740 487 306 17 0 chrX 31655594 31655774 -130944156 + L1M4c LINE L1 1553 1735 -4649 2112 94 0 39 chrX 31656393 31656700 -130943230 - AluSx SINE Alu 0 312 18 342 273 127 0 chrX 31656807 31656972 -130942958 + L1MC5 LINE L1 7693 7878 -83 311 292 56 50 chrX 31658322 31658483 -130941447 - LTR16C LTR ERVL -162 329 168 1847 133 66 30 chrX 31659005 31659367 -130940563 - THE1C LTR MaLR 0 375 1 2481 147 20 15 chrX 31659371 31659828 -130940102 - THE1C-int LTR MaLR -4 1576 1118 2163 137 464 12 chrX 31659937 31660512 -130939418 - THE1C-int LTR MaLR -739 841 7 1787 147 58 19 chrX 31660518 31660879 -130939051 - THE1C LTR MaLR 0 375 1 192 295 0 95 chrX 31662517 31662612 -130937318 - L2 LINE L2 -50 3222 3137 1483 176 3 76 chrX 31662925 31663255 -130936675 - AluJb SINE Alu -6 306 1 204 40 0 0 chrX 31663312 31663337 -130936593 + (TG)n Simple_repeat Simple_repeat 2 26 0 256 317 31 25 chrX 31663525 31663686 -130936244 - MLT1J2 LTR MaLR -3 447 286 322 278 79 13 chrX 31663742 31663922 -130936008 - MLT1J2 LTR MaLR -257 189 1 400 314 126 28 chrX 31664487 31664742 -130935188 + HAL1 LINE L1 812 1091 -1416 357 284 165 88 chrX 31664746 31665256 -130934674 + L1M2 LINE L1 780 1328 -5521 322 127 28 0 chrX 31666018 31666089 -130933841 + (GGGTG)n Simple_repeat Simple_repeat 1 73 0 1785 190 14 3 chrX 31666814 31667167 -130932763 + MSTB LTR MaLR 57 413 -13 788 292 62 3 chrX 31667170 31667571 -130932359 - LTR16C LTR ERVL -27 464 3 721 289 18 76 chrX 31668975 31669356 -130930574 + LTR16B LTR ERVL 106 464 0 780 279 58 80 chrX 31670338 31670681 -130929249 + LTR16C LTR ERVL 85 419 -72 1393 219 36 36 chrX 31670681 31671046 -130928884 + MLT1A1 LTR MaLR 1 365 0 780 279 58 80 chrX 31671046 31671115 -130928815 + LTR16C LTR ERVL 419 488 -3 1704 186 3 10 chrX 31671919 31672220 -130927710 - AluJo SINE Alu -13 299 1 1651 196 31 52 chrX 31672773 31673258 -130926672 + L1MC4 LINE L1 7337 7811 -231 725 226 0 46 chrX 31673258 31673453 -130926477 - AluJo SINE Alu 0 312 127 33 43 0 0 chrX 31673759 31673806 -130926124 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chrX 31673863 31673884 -130926046 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chrX 31673939 31674001 -130925929 + AT_rich Low_complexity Low_complexity 1 62 0 262 300 83 25 chrX 31674055 31674175 -130925755 + MIR SINE MIR 16 142 -66 1990 151 7 7 chrX 31675309 31675667 -130924263 - AluSx SINE Alu 0 364 7 1981 274 81 24 chrX 31675826 31676167 -130923763 + HAL1 LINE L1 43 363 -2144 1717 212 33 42 chrX 31676167 31676620 -130923310 - LTR2 LTR ERV1 0 449 1 1981 274 81 24 chrX 31676620 31677080 -130922850 + HAL1 LINE L1 363 890 -1617 262 0 0 50 chrX 31677082 31677122 -130922808 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 4432 111 1 0 chrX 31677185 31677876 -130922054 - L1PA8 LINE L1 -948 5198 4507 6763 70 12 2 chrX 31677876 31678849 -130921081 + L1PA8 LINE L1 5186 6167 -5 3377 254 75 14 chrX 31678851 31680196 -130919734 + HAL1 LINE L1 968 2394 -113 994 225 12 8 chrX 31680339 31680588 -130919342 + L1MC5 LINE L1 6990 7239 -722 771 283 73 29 chrX 31680671 31681699 -130918231 + L1ME3A LINE L1 4876 5952 -218 735 250 6 0 chrX 31683039 31683215 -130916715 + MER5B DNA MER1_type 2 178 0 493 238 186 0 chrX 31683226 31683374 -130916556 + MER5A DNA MER1_type 4 183 -6 207 214 0 0 chrX 31683789 31683831 -130916099 + MIR SINE MIR 216 257 -5 318 324 30 72 chrX 31684746 31685008 -130914922 + LTR16A1 LTR ERVL 195 445 -12 275 305 85 24 chrX 31686423 31686505 -130913425 + MER5A DNA MER1_type 37 123 -66 259 317 39 10 chrX 31686622 31686726 -130913204 + L2 LINE L2 3188 3294 -19 31 0 0 0 chrX 31686990 31687021 -130912909 + AT_rich Low_complexity Low_complexity 1 31 0 207 333 13 13 chrX 31687051 31687129 -130912801 - MIR SINE MIR -126 136 59 385 250 311 11 chrX 31687632 31687812 -130912118 + MLT1K LTR MaLR 17 250 -338 1313 93 52 0 chrX 31687860 31688054 -130911876 - L1PA13 LINE L1 -8 6155 5952 836 295 26 57 chrX 31688697 31689121 -130910809 - LTR67 LTR ERVL -33 524 114 6744 189 37 35 chrX 31689198 31689828 -130910102 - L1 LINE L1 -1052 5094 4467 1429 170 193 33 chrX 31689828 31690222 -130909708 - MSTB2 LTR MaLR 0 457 1 6744 189 37 35 chrX 31690222 31691168 -130908762 - L1 LINE L1 -1679 4467 3510 2131 107 0 26 chrX 31691168 31691477 -130908453 - AluSx SINE Alu -11 301 1 6744 189 37 35 chrX 31691477 31691669 -130908261 - L1 LINE L1 -2636 3510 3320 4565 225 61 12 chrX 31691668 31692743 -130907187 - L1PA13 LINE L1 -5554 1233 106 * 215 377 0 13 chrX 31692748 31692825 -130907105 - MIR SINE MIR -165 97 22 207 114 0 0 chrX 31694160 31694195 -130905735 + (TG)n Simple_repeat Simple_repeat 2 36 0 197 337 11 22 chrX 31694273 31694362 -130905568 - L2 LINE L2 -675 2639 2552 1353 153 134 15 chrX 31695121 31695389 -130904541 - AluJb SINE Alu -2 300 1 2355 264 69 7 chrX 31698957 31700175 -130899755 - L1ME LINE L1 -704 5462 4166 261 222 36 126 chrX 31700495 31700662 -130899268 + MIR SINE MIR 108 259 -3 2109 95 7 7 chrX 31701216 31701537 -130898393 + AluSq SINE Alu 1 313 0 2295 222 131 97 chrX 31701583 31702084 -130897846 + L1MD3 LINE L1 6564 7046 -949 366 163 214 20 chrX 31702084 31702182 -130897748 + MLT1F1 LTR MaLR 9 125 -442 2295 222 131 97 chrX 31702182 31702764 -130897166 + L1MD3 LINE L1 7046 7993 -2 210 349 61 30 chrX 31702828 31702960 -130896970 + MER5A DNA MER1_type 53 188 -1 1632 176 31 28 chrX 31703791 31704144 -130895786 + MLT2D LTR ERVL 1 354 -60 189 0 0 0 chrX 31704145 31704166 -130895764 + (TC)n Simple_repeat Simple_repeat 2 22 0 207 0 0 0 chrX 31704315 31704338 -130895592 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 420 20 0 0 chrX 31704337 31704386 -130895544 + (CA)n Simple_repeat Simple_repeat 2 50 0 245 371 0 11 chrX 31704641 31704730 -130895200 + MER5B DNA MER1_type 13 100 -78 2014 74 0 0 chrX 31706617 31706860 -130893070 - AluSq SINE Alu -70 243 1 21 0 0 0 chrX 31707493 31707514 -130892416 + AT_rich Low_complexity Low_complexity 1 21 0 855 174 63 74 chrX 31707514 31707729 -130892201 - L1MC4 LINE L1 -8 8034 7818 525 100 0 0 chrX 31707729 31707819 -130892111 + (TA)n Simple_repeat Simple_repeat 2 91 0 2201 86 7 3 chrX 31707819 31708109 -130891821 - AluSx SINE Alu -21 291 1 855 174 63 74 chrX 31708109 31708243 -130891687 - L1MC4 LINE L1 -222 7820 7688 324 319 125 82 chrX 31709164 31709725 -130890205 + L1M2 LINE L1 823 1407 -5442 3529 180 73 25 chrX 31709829 31710755 -130889175 - L1MA9 LINE L1 -38 6274 5258 1634 172 129 65 chrX 31710755 31711312 -130888618 - LTR49 LTR ERV1 0 595 3 3529 180 73 25 chrX 31711312 31711744 -130888186 - L1MA9 LINE L1 -1054 5258 4848 2479 137 20 0 chrX 31711754 31712149 -130887781 - MER57A LTR ERV1 0 403 1 15367 114 73 44 chrX 31712149 31714916 -130885014 - MER57A-int LTR ERV1 0 7537 4692 1282 136 5 0 chrX 31714918 31715124 -130884806 - MER57A LTR ERV1 -196 207 1 340 111 0 0 chrX 31715164 31715218 -130884712 + LTR24B LTR ERV1 1 54 -522 1094 200 28 22 chrX 31715414 31715734 -130884196 + LTR23-int LTR ERV1 373 694 -4429 438 290 21 7 chrX 31716506 31716651 -130883279 + LTR23-int LTR ERV1 1129 1275 -5056 4953 126 16 24 chrX 31716659 31717306 -130882624 + L1MC1 LINE L1 5471 6112 -221 1879 184 94 8 chrX 31717306 31717572 -130882358 - MSTB LTR MaLR 0 426 114 185 0 40 0 chrX 31717572 31717597 -130882333 + (CGGGGG)n Simple_repeat Simple_repeat 2 27 0 1879 184 94 8 chrX 31717597 31717722 -130882208 - MSTB LTR MaLR -312 114 1 4953 126 16 24 chrX 31717722 31717924 -130882006 + L1MC1 LINE L1 6112 6314 -19 716 206 7 7 chrX 31718679 31718825 -130881105 - MLT1A2 LTR MaLR -11 363 218 524 131 71 0 chrX 31718935 31719034 -130880896 - L1 LINE L1 -1998 4148 4043 3468 88 4 6 chrX 31719043 31719542 -130880388 + L1MA1 LINE L1 5805 6302 0 400 200 44 11 chrX 31719567 31719657 -130880273 - MLT1A2 LTR MaLR -273 101 9 375 312 86 18 chrX 31720413 31720634 -130879296 + HAL1 LINE L1 2083 2318 -189 25 0 0 0 chrX 31720655 31720680 -130879250 + AT_rich Low_complexity Low_complexity 1 25 0 194 211 70 28 chrX 31720996 31721067 -130878863 + MER5C DNA MER1_type 96 169 -155 185 259 0 69 chrX 31721678 31721736 -130878194 + L2 LINE L2 3112 3165 -107 47 33 0 0 chrX 31721881 31721942 -130877988 + AT_rich Low_complexity Low_complexity 1 61 0 221 311 66 38 chrX 31722325 31722431 -130877499 - L2 LINE L2 -20 3293 3185 30 45 0 0 chrX 31722569 31722613 -130877317 + AT_rich Low_complexity Low_complexity 1 44 0 249 288 123 7 chrX 31722900 31723046 -130876884 + L1MC5 LINE L1 7342 7504 -457 732 208 101 39 chrX 31723084 31723392 -130876538 + L1MC5 LINE L1 7605 7931 -30 22 0 0 0 chrX 31723960 31723982 -130875948 + AT_rich Low_complexity Low_complexity 1 22 0 974 195 5 5 chrX 31724172 31724362 -130875568 + MLT1B LTR MaLR 201 390 0 268 362 31 16 chrX 31725808 31725935 -130873995 + MIR3 SINE MIR 32 160 -48 246 344 129 0 chrX 31726054 31726217 -130873713 - MIR SINE MIR -63 199 16 189 261 58 72 chrX 31728731 31728800 -130871130 + MIR3 SINE MIR 3 70 -138 779 163 7 7 chrX 31728869 31729010 -130870920 + Ricksha DNA DNA 1 141 -3105 1577 167 0 7 chrX 31729045 31729314 -130870616 - AluSx SINE Alu 0 312 46 2643 146 2 14 chrX 31729340 31729780 -130870150 + Ricksha DNA DNA 1690 2124 -1122 264 235 0 0 chrX 31729782 31729850 -130870080 + C-rich Low_complexity Low_complexity 3 70 0 883 140 23 10 chrX 31729850 31730251 -130869679 + CT-rich Low_complexity Low_complexity 1 406 0 1402 145 12 64 chrX 31730251 31730500 -130869430 - AluSx SINE Alu -16 296 61 4366 153 23 31 chrX 31730500 31730882 -130869048 + Ricksha DNA DNA 2307 2690 -556 2234 82 7 13 chrX 31730882 31731168 -130868762 + AluSq SINE Alu 1 286 -27 499 70 12 12 chrX 31731168 31731254 -130868676 + (CA)n Simple_repeat Simple_repeat 2 87 0 2234 82 7 13 chrX 31731254 31731273 -130868657 + AluSq SINE Alu 286 304 -9 4366 153 23 31 chrX 31731273 31731829 -130868101 + Ricksha DNA DNA 2690 3238 -8 683 285 104 11 chrX 31731839 31732193 -130867737 - LTR33 LTR ERVL -134 387 1 195 129 0 0 chrX 31732671 31732702 -130867228 + (TG)n Simple_repeat Simple_repeat 2 32 0 5278 82 9 1 chrX 31735626 31736312 -130863618 + LTR8 LTR ERV1 1 691 0 315 369 46 0 chrX 31737384 31737514 -130862416 - L2 LINE L2 -10 3262 3127 247 32 0 0 chrX 31737547 31737578 -130862352 + (TTTG)n Simple_repeat Simple_repeat 2 136 0 2236 89 0 0 chrX 31737578 31737860 -130862070 - AluY SINE Alu -1 312 1 4444 224 46 38 chrX 31738005 31740282 -130859648 + L1M4 LINE L1 334 2762 -3884 2535 141 6 32 chrX 31740281 31741010 -130858920 - L1MA5 LINE L1 -629 5671 4958 * 3314 161 8 21 chrX 31741010 31741636 -130858294 + L1MA5 LINE L1 5677 6300 0 1410 256 87 3 chrX 31741645 31742232 -130857698 + L1M4 LINE L1 2754 3389 -3255 2106 132 0 0 chrX 31742267 31742571 -130857359 - AluY SINE Alu -6 305 2 288 122 0 0 chrX 31742572 31742613 -130857317 - L1M1 LINE L1 -7509 56 16 2168 114 0 32 chrX 31742736 31743051 -130856879 + AluSq SINE Alu 1 305 -8 789 190 0 52 chrX 31743096 31743270 -130856660 - L1MB5 LINE L1 0 6174 6010 18030 171 48 20 chrX 31743272 31748176 -130851754 + L1MA3 LINE L1 704 5748 -1817 6379 135 31 6 chrX 31748174 31749618 -130850312 + L1MA3 LINE L1 6242 7724 0 * 26 50 0 0 chrX 31749634 31749674 -130850256 + AT_rich Low_complexity Low_complexity 1 40 0 528 310 66 60 chrX 31749878 31750259 -130849671 + L3 LINE CR1 522 904 -673 274 23 47 0 chrX 31750745 31750788 -130849142 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 9405 35 2 0 chrX 31750794 31752701 -130847229 - L1PA4 LINE L1 -8 6147 4239 330 293 9 60 chrX 31752927 31753105 -130846825 + L1MC/D LINE L1 5684 5864 -257 21 0 0 0 chrX 31753162 31753183 -130846747 + AT_rich Low_complexity Low_complexity 1 21 0 936 210 78 47 chrX 31753200 31753457 -130846473 + LTR40a LTR ERVL 3 267 -252 5673 127 29 3 chrX 31753517 31754616 -130845314 - L1MA8 LINE L1 -75 6216 5096 579 29 0 0 chrX 31755032 31755101 -130844829 + (CA)n Simple_repeat Simple_repeat 2 70 0 271 333 11 0 chrX 31755825 31755915 -130844015 + MIR SINE MIR 48 138 -124 421 182 0 126 chrX 31755975 31756118 -130843812 + L1M3 LINE L1 5403 5527 -641 234 132 47 66 chrX 31757015 31757121 -130842809 + (TATAA)n Simple_repeat Simple_repeat 4 107 0 233 238 68 88 chrX 31757227 31757374 -130842556 - MER65B LTR ERV1 -77 454 311 1055 210 42 91 chrX 31757704 31758057 -130841873 - MER58B DNA MER1_type -1 340 5 27 0 0 0 chrX 31758585 31758612 -130841318 + AT_rich Low_complexity Low_complexity 1 27 0 2328 113 0 0 chrX 31758902 31759211 -130840719 + AluSx SINE Alu 1 309 -3 241 347 10 82 chrX 31761000 31761098 -130838832 + MER91A DNA MER1_type 98 188 -8 539 227 0 0 chrX 31761183 31761293 -130838637 - MER94 DNA DNA -20 114 5 1805 106 118 72 chrX 31761293 31761641 -130838289 - THE1B LTR MaLR 0 364 1 10377 97 64 18 chrX 31761641 31763151 -130836779 - THE1B-int LTR MaLR 0 1580 1 1019 131 12 6 chrX 31763151 31763311 -130836619 - THE1B LTR MaLR 0 364 204 882 74 0 0 chrX 31763311 31763419 -130836511 - AluSq SINE Alu -72 241 134 506 182 14 35 chrX 31763429 31763572 -130836358 - L1MA8 LINE L1 -3 6288 6149 1241 121 15 0 chrX 31763572 31763770 -130836160 + L1MA7 LINE L1 5688 5888 -403 300 53 0 0 chrX 31764745 31764783 -130835147 + (CA)n Simple_repeat Simple_repeat 2 39 0 41 21 0 0 chrX 31764899 31764947 -130834983 + AT_rich Low_complexity Low_complexity 1 48 0 1462 185 127 10 chrX 31764947 31765261 -130834669 + MSTB LTR MaLR 1 351 -75 271 246 0 15 chrX 31765273 31765407 -130834523 + (TA)n Simple_repeat Simple_repeat 1 132 0 184 286 41 0 chrX 31765804 31765853 -130834077 - MIR SINE MIR -122 86 36 185 277 46 0 chrX 31766778 31766843 -130833087 + L3 LINE CR1 977 1044 -533 2386 296 58 30 chrX 31767527 31768481 -130831449 + L1M4b LINE L1 12 1224 -5635 799 182 22 62 chrX 31768940 31769165 -130830765 + L1M4b LINE L1 1219 1434 -5425 1355 262 15 3 chrX 31769426 31769769 -130830161 + L1PA13 LINE L1 264 610 -6177 21 57 0 0 chrX 31770772 31770807 -130829123 + AT_rich Low_complexity Low_complexity 1 35 0 1033 277 106 56 chrX 31771028 31771266 -130828664 + L1MC5 LINE L1 6741 6966 -995 375 113 0 0 chrX 31771266 31771328 -130828602 + (CA)n Simple_repeat Simple_repeat 2 63 0 1033 277 106 56 chrX 31771328 31771764 -130828166 + L1MC5 LINE L1 6966 7379 -582 180 0 0 0 chrX 31771764 31771784 -130828146 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1033 277 106 56 chrX 31771784 31772112 -130827818 + L1MC5 LINE L1 7379 7794 -167 1849 133 48 48 chrX 31772123 31772498 -130827432 - THE1C LTR MaLR 0 375 1 391 317 49 0 chrX 31772633 31772797 -130827133 - L1M4 LINE L1 -2114 4032 3861 22 0 0 0 chrX 31772845 31772867 -130827063 + AT_rich Low_complexity Low_complexity 1 22 0 15612 169 32 6 chrX 31772867 31780087 -130819843 - L1MA2 LINE L1 0 7723 12 699 297 94 18 chrX 31780339 31780679 -130819251 + HAL1b LINE L1 280 645 -703 32 0 0 0 chrX 31780711 31780743 -130819187 + AT_rich Low_complexity Low_complexity 1 32 0 1366 185 11 8 chrX 31781178 31781448 -130818482 - L1MC4a LINE L1 -401 7407 7093 299 245 11 0 chrX 31781449 31781543 -130818387 + (TA)n Simple_repeat Simple_repeat 1 95 0 388 113 0 0 chrX 31781553 31781615 -130818315 + L1MC3 LINE L1 7031 7092 -693 738 198 0 0 chrX 31781641 31781818 -130818112 + (TA)n Simple_repeat Simple_repeat 2 178 0 254 133 0 0 chrX 31781860 31781905 -130818025 - L1MC4 LINE L1 -1339 6703 6659 3570 173 74 3 chrX 31781942 31782408 -130817522 + L1MC3 LINE L1 6367 6897 -888 240 111 0 0 chrX 31782408 31782444 -130817486 + (CA)n Simple_repeat Simple_repeat 1 36 0 3570 173 74 3 chrX 31782444 31782655 -130817275 + L1MC3 LINE L1 6897 7092 -693 1494 174 22 7 chrX 31782694 31782970 -130816960 - L1MC3 LINE L1 -1139 6646 6367 214 383 26 9 chrX 31784454 31784569 -130815361 + L2 LINE L2 3156 3272 0 184 30 61 0 chrX 31787277 31787310 -130812620 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2252 84 0 0 chrX 31787312 31787597 -130812333 - AluSc SINE Alu -24 285 1 203 331 89 45 chrX 31787598 31787755 -130812175 - L2 LINE L2 -475 2839 2676 6165 153 19 14 chrX 31789403 31791335 -130808595 - L1MA8 LINE L1 -2 6289 4346 5235 173 40 16 chrX 31791330 31792989 -130806941 - L1MA4 LINE L1 -6 6294 4587 * 467 71 0 0 chrX 31792989 31793059 -130806871 - L1MA2 LINE L1 0 6304 6235 5235 173 40 16 chrX 31793059 31793359 -130806571 - L1MA4 LINE L1 -1713 4587 4296 610 288 40 0 chrX 31793362 31793539 -130806391 + MIR SINE MIR 66 249 -13 3457 132 9 2 chrX 31793960 31794499 -130805431 - L1PA14 LINE L1 -2 6159 5617 1479 251 52 38 chrX 31794526 31794608 -130805322 + L1ME1 LINE L1 5601 5680 -486 1892 156 0 20 chrX 31794608 31794910 -130805020 - AluJo SINE Alu -14 298 3 1479 251 52 38 chrX 31794910 31795384 -130804546 + L1ME1 LINE L1 5680 6165 -1 384 296 101 30 chrX 31795379 31795698 -130804232 - L1M4c LINE L1 -4742 2545 2040 * 26 30 0 0 chrX 31796245 31796278 -130803652 + AT_rich Low_complexity Low_complexity 1 33 0 276 162 0 40 chrX 31796278 31796352 -130803578 - L1MA3 LINE L1 0 6305 6235 1703 136 88 28 chrX 31796352 31796704 -130803226 - THE1C LTR MaLR 0 375 3 930 286 59 44 chrX 31797181 31797704 -130802226 - MLT1G3 LTR MaLR -4 563 7 29 0 0 0 chrX 31798888 31798917 -130801013 + AT_rich Low_complexity Low_complexity 1 29 0 524 128 0 0 chrX 31800450 31800560 -130799370 + AluSg/x SINE Alu 203 312 0 325 304 115 29 chrX 31800585 31800828 -130799102 - L1M4c LINE L1 -6269 735 472 476 205 103 58 chrX 31805494 31805650 -130794280 + MER5A DNA MER1_type 27 189 0 3587 202 24 11 chrX 31805762 31806486 -130793444 - LTR68 LTR ERV1 -7 733 1 1552 236 35 56 chrX 31808384 31808863 -130791067 - MER110 LTR ERV1 -22 469 1 239 124 52 21 chrX 31809012 31809109 -130790821 + (TA)n Simple_repeat Simple_repeat 1 100 0 300 146 34 0 chrX 31809666 31809755 -130790175 + (TA)n Simple_repeat Simple_repeat 1 92 0 2116 249 119 22 chrX 31809760 31810492 -130789438 - Charlie7 DNA MER1_type -79 2533 1685 306 0 0 0 chrX 31810492 31810526 -130789404 + (TG)n Simple_repeat Simple_repeat 2 35 0 2116 249 119 22 chrX 31810526 31810749 -130789181 - Charlie7 DNA MER1_type -927 1685 1485 394 290 205 0 chrX 31810761 31810961 -130788969 - Charlie7 DNA MER1_type -2271 341 101 207 170 191 0 chrX 31812009 31812056 -130787874 - MER5A DNA MER1_type -105 84 29 820 222 6 6 chrX 31812263 31812439 -130787491 + MER5B DNA MER1_type 3 178 0 218 312 196 7 chrX 31812471 31812609 -130787321 + MER5A DNA MER1_type 26 189 0 25 51 0 0 chrX 31812615 31812654 -130787276 + AT_rich Low_complexity Low_complexity 1 39 0 2964 189 7 0 chrX 31812654 31813227 -130786703 - L1MB1 LINE L1 -1 6167 5591 758 176 14 14 chrX 31813228 31813370 -130786560 - L1M4c LINE L1 -6888 142 1 5403 193 22 12 chrX 31813376 31813602 -130786328 + L1MC1 LINE L1 4890 5112 -1221 2365 81 0 7 chrX 31813602 31813911 -130786019 + AluSx SINE Alu 1 307 -5 5403 193 22 12 chrX 31813911 31815115 -130784815 + L1MC1 LINE L1 5112 6332 -1 690 312 89 24 chrX 31815116 31815172 -130784758 - L2 LINE L2 -618 2696 2645 2045 153 56 63 chrX 31815172 31815603 -130784327 + MSTA LTR MaLR 1 428 0 690 312 89 24 chrX 31815603 31815838 -130784092 - L2 LINE L2 -669 2645 2386 1479 163 15 0 chrX 31816470 31816740 -130783190 + L1MB2 LINE L1 5895 6168 -3 257 299 15 0 chrX 31816990 31817057 -130782873 + MIR SINE MIR 65 132 -130 258 32 0 0 chrX 31817317 31817348 -130782582 + (TC)n Simple_repeat Simple_repeat 2 32 0 201 121 0 0 chrX 31817349 31817382 -130782548 + (CA)n Simple_repeat Simple_repeat 2 34 0 2077 128 3 0 chrX 31818463 31818759 -130781171 - AluSx SINE Alu -15 297 1 187 316 53 26 chrX 31819710 31819786 -130780144 - L3 LINE CR1 -11 1566 1489 390 323 70 0 chrX 31819886 31820072 -130779858 + MIR SINE MIR 36 234 -28 883 34 0 17 chrX 31820076 31820193 -130779737 + L1P LINE L1 1824 1938 -4208 539 323 62 31 chrX 31820193 31820481 -130779449 - L3 LINE CR1 -949 628 332 290 294 11 0 chrX 31822064 31822156 -130777774 + L1ME3A LINE L1 3 95 -5975 1499 289 83 6 chrX 31822309 31823197 -130776733 + L1ME3A LINE L1 2545 3501 -2579 1103 265 111 39 chrX 31823234 31823720 -130776210 + L1ME3A LINE L1 5471 5991 -113 25 31 0 0 chrX 31823790 31823822 -130776108 + AT_rich Low_complexity Low_complexity 1 32 0 281 335 48 20 chrX 31824329 31824577 -130775353 - L1MC/D LINE L1 -1939 5869 5615 26 50 0 0 chrX 31825089 31825129 -130774801 + AT_rich Low_complexity Low_complexity 1 40 0 2260 99 9 0 chrX 31826345 31826667 -130773263 + L1PA14 LINE L1 5833 6157 -4 2375 185 36 20 chrX 31826689 31827518 -130772412 - L1 LINE L1 -3563 4002 3165 2219 109 10 10 chrX 31828040 31828351 -130771579 - AluSx SINE Alu -1 311 1 304 130 36 11 chrX 31828725 31828805 -130771125 - MLT1H1 LTR MaLR -19 536 297 354 45 0 0 chrX 31828917 31828961 -130770969 + (CA)n Simple_repeat Simple_repeat 2 45 0 469 317 94 28 chrX 31828990 31829309 -130770621 + L1M4 LINE L1 77 416 -6126 1620 167 101 10 chrX 31829389 31829695 -130770235 + L1M1 LINE L1 13 346 -7219 446 300 38 55 chrX 31829842 31830318 -130769612 - L1MC/D LINE L1 -1117 5029 4562 1704 171 47 44 chrX 31830877 31831239 -130768691 - MLT1A1 LTR MaLR 0 365 3 24 0 0 0 chrX 31831597 31831621 -130768309 + AT_rich Low_complexity Low_complexity 1 24 0 5559 177 24 20 chrX 31831683 31833121 -130766809 - L1MA9 LINE L1 -105 6207 4749 6512 77 18 33 chrX 31833121 31834203 -130765727 - L1PA12 LINE L1 -3 6165 5076 5559 177 24 20 chrX 31834203 31834784 -130765146 - L1MA9 LINE L1 -1563 4749 4172 500 292 40 53 chrX 31835253 31835479 -130764451 - MIR SINE MIR -24 238 16 339 341 16 8 chrX 31835597 31835726 -130764204 - L2 LINE L2 0 3313 3184 2667 68 0 22 chrX 31836949 31837315 -130762615 + L1PB1 LINE L1 5776 6133 -18 24 32 0 0 chrX 31838100 31838131 -130761799 + AT_rich Low_complexity Low_complexity 1 31 0 291 259 0 0 chrX 31838472 31838553 -130761377 + MLT1I LTR MaLR 326 406 -3 674 160 0 0 chrX 31838653 31838772 -130761158 - L1MA5 LINE L1 0 6300 6182 2255 117 0 0 chrX 31839574 31839873 -130760057 - AluSx SINE Alu -13 299 1 279 355 103 19 chrX 31840289 31840444 -130759486 + L2 LINE L2 3100 3267 -5 1454 167 106 28 chrX 31840515 31840797 -130759133 - AluJb SINE Alu -8 304 1 1872 170 50 8 chrX 31840805 31841164 -130758766 - L1PB4 LINE L1 -1 6155 5782 225 196 0 0 chrX 31841165 31841216 -130758714 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 1242 137 38 0 chrX 31841296 31841507 -130758423 - L1PB4 LINE L1 -367 5789 5571 5735 128 15 17 chrX 31841521 31842457 -130757473 - L1MA1 LINE L1 0 6302 5369 2393 60 0 26 chrX 31842808 31843110 -130756820 - AluY SINE Alu -17 294 1 1166 338 43 16 chrX 31843781 31844293 -130755637 - MER115 DNA AcHobo -12 681 156 2010 138 0 3 chrX 31844661 31844958 -130754972 + AluSx SINE Alu 1 296 -16 2474 59 0 31 chrX 31845009 31845330 -130754600 + AluY SINE Alu 1 311 0 200 336 82 27 chrX 31845770 31845916 -130754014 + MIR SINE MIR 36 189 -73 692 271 20 8 chrX 31846719 31846974 -130752956 - L1MDa LINE L1 -3156 4409 4152 2430 202 14 47 chrX 31846974 31847469 -130752461 - MLT2B3 LTR ERVL -4 550 72 295 57 0 0 chrX 31847568 31847603 -130752327 + U6 snRNA snRNA 1 35 -72 538 70 0 0 chrX 31847607 31847678 -130752252 - MLT2B3 LTR ERVL -483 71 1 1973 252 51 30 chrX 31847679 31849005 -130750925 - L1MDa LINE L1 -3420 4145 2789 515 248 15 7 chrX 31849035 31849172 -130750758 + LTR40a LTR ERVL 1 138 -381 1876 189 152 126 chrX 31849206 31849323 -130750607 - MLT1E2 LTR MaLR 0 626 513 2092 126 32 54 chrX 31849323 31849695 -130750235 + THE1B LTR MaLR 1 364 0 1876 189 152 126 chrX 31849695 31850203 -130749727 - MLT1E2 LTR MaLR -113 513 13 1635 239 153 16 chrX 31850288 31850992 -130748938 - L1M4 LINE L1 -2711 3435 2635 307 333 0 35 chrX 31851048 31851162 -130748768 - L1MDa LINE L1 -5847 1718 1609 * 819 186 0 51 chrX 31851146 31851302 -130748628 - L1MDa LINE L1 -6376 1189 1042 234 394 108 35 chrX 31852005 31852588 -130747342 - L2 LINE L2 0 3272 2633 210 362 32 11 chrX 31854960 31855054 -130744876 - MER5A DNA MER1_type -93 96 1 1090 287 70 52 chrX 31855303 31856098 -130743832 + L2 LINE L2 2514 3312 -1 3380 207 19 20 chrX 31856188 31857068 -130742862 - L1M LINE L1 -743 5403 4543 1172 130 19 19 chrX 31857054 31857117 -130742813 + L1M3 LINE L1 5425 5487 -847 * 2095 123 16 10 chrX 31857117 31857427 -130742503 + AluSx SINE Alu 1 312 0 1172 130 19 19 chrX 31857427 31857570 -130742360 + L1M3 LINE L1 5486 5631 -703 * 4042 182 30 14 chrX 31857560 31858323 -130741607 + L1MA9 LINE L1 5178 6058 -254 1979 100 15 0 chrX 31858323 31858592 -130741338 + AluSx SINE Alu 33 305 -7 4042 182 30 14 chrX 31858592 31858775 -130741155 + L1MA9 LINE L1 6058 6237 -75 235 83 0 28 chrX 31859248 31859284 -130740646 + MARNA DNA Mariner 163 197 -389 1844 201 24 75 chrX 31859743 31860275 -130739655 + MLT1D LTR MaLR 1 505 0 21 36 0 0 chrX 31860440 31860468 -130739462 + AT_rich Low_complexity Low_complexity 1 28 0 320 232 11 74 chrX 31860760 31860855 -130739075 + MIR SINE MIR 101 189 -73 228 207 27 162 chrX 31861251 31861362 -130738568 - MLT1K LTR MaLR -108 480 385 474 319 25 0 chrX 31861364 31861521 -130738409 - MIR SINE MIR -94 168 8 297 282 16 73 chrX 31861616 31861740 -130738190 - MLT1K LTR MaLR -276 312 196 778 308 23 0 chrX 31861819 31862040 -130737890 + MIR SINE MIR 13 238 -24 2959 171 6 6 chrX 31863542 31864181 -130735749 - MER50 LTR ERV1 -23 711 1 238 118 0 0 chrX 31865878 31865912 -130734018 - MSTA-int LTR MaLR -1616 35 2 2557 129 49 7 chrX 31865913 31866324 -130733606 - MSTA LTR MaLR 0 428 1 1350 123 15 0 chrX 31866328 31866532 -130733398 - MLT2B1 LTR ERVL -311 209 3 538 319 123 74 chrX 31867168 31867427 -130732503 - HAL1 LINE L1 -1130 1377 1132 2300 97 0 0 chrX 31867427 31867727 -130732203 + AluSx SINE Alu 1 300 -12 538 319 123 74 chrX 31867727 31868436 -130731494 - HAL1 LINE L1 -1375 1132 362 3684 200 54 23 chrX 31868442 31868458 -130731472 - L1MB5 LINE L1 -8 6166 6152 1416 251 25 19 chrX 31868458 31868821 -130731109 - MLT1A1 LTR MaLR 0 365 1 3684 200 54 23 chrX 31868821 31870351 -130729579 - L1MB5 LINE L1 -22 6152 4572 1043 162 21 1 chrX 31870364 31870537 -130729393 + L1MC2 LINE L1 5440 5588 -756 1695 162 33 0 chrX 31870537 31870809 -130729121 + AluJb SINE Alu 1 281 -31 1043 162 21 1 chrX 31870809 31870837 -130729093 + L1MC2 LINE L1 5588 5614 -730 278 179 0 30 chrX 31870837 31870904 -130729026 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 3466 174 51 7 chrX 31870908 31871615 -130728315 + L1MC2 LINE L1 5603 6340 -4 284 250 73 52 chrX 31872015 31872111 -130727819 - MIR SINE MIR -86 122 25 330 238 0 0 chrX 31872258 31872321 -130727609 - MIR SINE MIR -37 225 163 337 300 59 46 chrX 31872716 31873019 -130726911 + HAL1b LINE L1 100 406 -942 34 79 0 0 chrX 31873329 31873405 -130726525 + AT_rich Low_complexity Low_complexity 1 76 0 248 387 134 0 chrX 31873554 31873673 -130726257 + L2 LINE L2 3134 3268 -4 568 203 148 28 chrX 31874600 31874782 -130725148 - LTR16C LTR ERVL -9 482 279 1628 151 37 95 chrX 31874821 31875282 -130724648 - MER31A LTR ERV1 -28 438 1 677 278 31 21 chrX 31875282 31875471 -130724459 - LTR16C LTR ERVL -220 271 81 463 16 0 0 chrX 31876266 31876327 -130723603 - L1PA2 LINE L1 -1 6154 6094 2020 225 38 61 chrX 31876609 31877235 -130722695 - LTR9 LTR ERV1 0 612 1 387 241 111 62 chrX 31877722 31877884 -130722046 - MER91A DNA MER1_type -26 170 1 21 0 0 0 chrX 32080674 32080695 -130519235 + AT_rich Low_complexity Low_complexity 1 21 0 2312 114 0 0 chrX 32080817 32081123 -130518807 - AluSx SINE Alu -6 306 1 272 318 68 23 chrX 32081743 32081875 -130518055 - MIR3 SINE MIR -10 198 61 266 212 273 0 chrX 32081898 32081964 -130517966 - MIR SINE MIR -10 252 169 498 289 57 26 chrX 32082103 32082331 -130517599 - MLT1J1 LTR MaLR -141 305 71 259 316 152 19 chrX 32083381 32083539 -130516391 - MIR SINE MIR -64 198 20 2562 77 0 0 chrX 32083610 32083923 -130516007 + AluSp SINE Alu 1 313 0 773 174 0 0 chrX 32083961 32084093 -130515837 - MER68 LTR ERV1 -7 555 424 991 273 67 38 chrX 32084995 32085077 -130514853 - L2 LINE L2 -1 3312 3234 2116 91 26 42 chrX 32085077 32085385 -130514545 + AluSx SINE Alu 1 303 -9 991 273 67 38 chrX 32085385 32085719 -130514211 - L2 LINE L2 -79 3234 2884 233 54 0 54 chrX 32085870 32085907 -130514023 - L1MB1 LINE L1 -87 6081 6047 1944 96 57 21 chrX 32085907 32086188 -130513742 + AluSx SINE Alu 1 291 -21 2297 99 3 0 chrX 32086188 32086482 -130513448 + AluSg SINE Alu 1 295 -15 4156 173 18 2 chrX 32086504 32087390 -130512540 - L1MB1 LINE L1 -112 6056 5156 1387 191 8 3 chrX 32087685 32088184 -130511746 - MER68 LTR ERV1 -7 555 1 1038 211 76 63 chrX 32088966 32089346 -130510584 - MLT1B LTR MaLR 0 390 6 460 281 121 17 chrX 32089791 32090022 -130509908 + MIR SINE MIR 2 256 -6 207 139 0 0 chrX 32090994 32091030 -130508900 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 2376 36 0 0 chrX 32091210 32091488 -130508442 + L1PA4 LINE L1 5864 6141 -14 726 206 0 78 chrX 32091665 32091908 -130508022 - L1MC5 LINE L1 -1003 6958 6735 305 205 179 27 chrX 32091966 32092078 -130507852 - L1ME4a LINE L1 -2 6119 5991 645 269 103 0 chrX 32093055 32093211 -130506719 + MER5A DNA MER1_type 7 178 -11 1957 178 151 14 chrX 32093810 32094254 -130505676 - MLT1D LTR MaLR 0 505 1 1961 119 0 0 chrX 32095068 32095328 -130504602 - AluSg SINE Alu -13 297 38 2080 84 66 31 chrX 32096070 32096356 -130503574 - AluSq SINE Alu -17 296 1 2181 109 3 0 chrX 32096586 32096879 -130503051 + AluSx SINE Alu 1 294 -18 356 332 20 40 chrX 32097360 32097610 -130502320 - L1MC4a LINE L1 -892 6916 6672 665 239 23 11 chrX 32097881 32098057 -130501873 - MER5B DNA MER1_type 0 178 1 201 158 0 26 chrX 32098683 32098721 -130501209 + CT-rich Low_complexity Low_complexity 3 39 0 199 326 0 0 chrX 32098937 32098983 -130500947 + MER5A DNA MER1_type 144 189 0 583 226 175 0 chrX 32099257 32099394 -130500536 - MER5A DNA MER1_type -7 182 22 585 217 0 121 chrX 32099410 32099562 -130500368 - MER5B DNA MER1_type -3 175 51 2127 115 7 0 chrX 32099562 32099857 -130500073 + AluSx SINE Alu 2 298 -14 585 217 0 121 chrX 32099857 32099902 -130500028 - MER5B DNA MER1_type -127 51 2 1145 269 46 39 chrX 32100492 32100953 -130498977 - LTR16B LTR ERVL 0 464 1 293 325 58 25 chrX 32102397 32102517 -130497413 + L2 LINE L2 3149 3272 0 * 356 321 37 22 chrX 32102515 32102649 -130497281 + MIR SINE MIR 6 141 -121 2155 107 11 0 chrX 32102892 32103206 -130496724 - AluSx SINE Alu 0 317 1 337 213 40 13 chrX 32103316 32103391 -130496539 + L2 LINE L2 3193 3269 -44 616 173 0 0 chrX 32104541 32104651 -130495279 - Tigger3(Golem) DNA MER2_type -1 3028 2919 534 228 18 110 chrX 32104756 32104868 -130495062 - LTR16A1 LTR ERVL -39 418 334 488 252 28 0 chrX 32104868 32104975 -130494955 + MER81 DNA DNA 5 114 0 534 228 18 110 chrX 32104975 32105081 -130494849 - LTR16A1 LTR ERVL -123 334 220 1095 213 49 67 chrX 32105332 32105722 -130494208 - MLT1B LTR MaLR 0 390 8 1708 220 26 46 chrX 32107068 32107527 -130492403 - LTR16A LTR ERVL 0 450 1 206 208 57 0 chrX 32107935 32107988 -130491942 - L2 LINE L2 -624 2690 2635 388 247 143 7 chrX 32108049 32108203 -130491727 + MER96 DNA MER1_type 1 175 0 485 208 71 54 chrX 32108318 32108486 -130491444 - L2 LINE L2 -208 3105 2935 1010 156 21 5 chrX 32109602 32109788 -130490142 - MER5A DNA MER1_type 0 189 1 736 255 82 50 chrX 32110007 32110787 -130489143 - L1ME4a LINE L1 -104 6017 5221 23 33 0 0 chrX 32111445 32111475 -130488455 + AT_rich Low_complexity Low_complexity 1 30 0 2288 108 3 0 chrX 32111480 32111775 -130488155 + AluSx SINE Alu 2 297 -15 346 266 131 84 chrX 32112805 32113256 -130486674 - LTR67 LTR ERVL 0 557 86 253 253 103 0 chrX 32113316 32113403 -130486527 + MIR SINE MIR 166 261 -1 449 265 135 71 chrX 32113652 32113760 -130486170 - MER5A DNA MER1_type 0 189 65 2166 117 3 16 chrX 32113760 32114068 -130485862 - AluSx SINE Alu -8 304 1 449 265 135 71 chrX 32114068 32114129 -130485801 - MER5A DNA MER1_type -124 65 9 364 353 19 32 chrX 32114589 32114745 -130485185 + MIR3 SINE MIR 4 157 -51 283 302 71 18 chrX 32114746 32114915 -130485015 + MER117 DNA MER1_type 2 179 -18 298 271 68 42 chrX 32114961 32115079 -130484851 - L2 LINE L2 -1 3271 3151 243 310 14 0 chrX 32115076 32115147 -130484783 - MIR3 SINE MIR -3 205 134 * 2291 91 0 0 chrX 32115155 32115473 -130484457 - AluSx SINE Alu 0 318 1 1007 133 0 111 chrX 32115575 32115665 -130484265 - MER3 DNA MER1_type 0 209 111 2252 95 0 7 chrX 32115665 32115981 -130483949 + AluSx SINE Alu 1 314 0 1007 133 0 111 chrX 32115981 32116123 -130483807 - MER3 DNA MER1_type -98 111 2 823 143 50 11 chrX 32116702 32116884 -130483046 - MER53 DNA DNA 0 189 1 505 295 99 56 chrX 32116995 32117337 -130482593 + L2 LINE L2 2943 3299 -14 411 269 70 43 chrX 32117348 32117534 -130482396 + MIR SINE MIR 2 192 -70 209 325 81 16 chrX 32117613 32117736 -130482194 + MIR SINE MIR 106 236 -26 5592 156 25 6 chrX 32117874 32118659 -130481271 - L1MA7 LINE L1 -426 5865 5096 2139 124 36 30 chrX 32118659 32119021 -130480909 + THE1B LTR MaLR 1 364 0 5592 156 25 6 chrX 32119021 32119826 -130480104 - L1MA7 LINE L1 -1195 5096 4249 2522 123 21 14 chrX 32119826 32120248 -130479682 + L1MA7 LINE L1 5858 6289 -2 276 228 114 65 chrX 32120326 32120449 -130479481 + MIR SINE MIR 124 252 -10 2092 114 7 13 chrX 32123185 32123484 -130476446 + AluSx SINE Alu 1 297 -15 2257 131 0 3 chrX 32123504 32123817 -130476113 - AluSx SINE Alu 0 312 1 323 394 0 78 chrX 32124241 32124421 -130475509 + MER91A DNA MER1_type 1 166 -30 1362 200 40 84 chrX 32125274 32125750 -130474180 + LTR16A1 LTR ERVL 1 455 -2 1619 83 46 0 chrX 32126165 32126382 -130473548 + MER30 DNA MER1_type 1 227 -3 1120 148 28 0 chrX 32126396 32126578 -130473352 - MER5A DNA MER1_type -2 187 1 419 258 275 17 chrX 32126685 32126863 -130473067 + MIR SINE MIR 31 254 -8 4503 168 161 20 chrX 32127341 32128361 -130471569 - Charlie1 DNA MER1_type 0 2761 1551 2275 105 0 0 chrX 32128361 32128657 -130471273 - AluSx SINE Alu -16 296 1 4503 168 161 20 chrX 32128657 32128819 -130471111 - Charlie1 DNA MER1_type -1210 1551 1413 2212 124 0 0 chrX 32128973 32129271 -130470659 - AluSx SINE Alu -14 298 1 567 268 19 56 chrX 32129434 32129647 -130470283 - L2 LINE L2 -18 3295 3091 243 266 119 29 chrX 32129655 32129774 -130470156 - MER5A DNA MER1_type -2 187 29 253 329 13 0 chrX 32129788 32129864 -130470066 - L2 LINE L2 -238 3075 2999 615 344 17 9 chrX 32130439 32130669 -130469261 - L2 LINE L2 -338 2976 2745 1374 166 87 67 chrX 32130972 32131407 -130468523 + LTR56 LTR ERV1 1 444 -1 415 297 143 11 chrX 32131454 32131629 -130468301 + MIR SINE MIR 58 255 -7 1500 167 52 7 chrX 32132352 32132622 -130467308 + AluJo SINE Alu 9 290 -22 234 256 23 35 chrX 32132747 32132833 -130467097 + MIR SINE MIR 172 256 -6 586 228 10 67 chrX 32133594 32133669 -130466261 + L1ME3 LINE L1 5455 5533 -637 2370 78 3 13 chrX 32133669 32133977 -130465953 - AluY SINE Alu -6 305 1 586 228 10 67 chrX 32133977 32134094 -130465836 + L1ME3 LINE L1 5533 5636 -534 267 255 59 0 chrX 32134092 32134194 -130465736 + L1ME3 LINE L1 6053 6160 -2 * 1765 180 13 45 chrX 32134726 32135103 -130464827 - MLT1A1 LTR MaLR 0 365 1 522 250 58 19 chrX 32135333 32135726 -130464204 + LTR16B LTR ERVL 8 459 -5 298 257 0 0 chrX 32135758 32135832 -130464098 + HERV16 LTR ERVL 105 178 -4818 3477 348 42 10 chrX 32135846 32138162 -130461768 + HERV16 LTR ERVL 2867 5250 -235 307 319 7 7 chrX 32138184 32138319 -130461611 + HERV16 LTR ERVL 4856 4990 -6 956 259 79 61 chrX 32138323 32138779 -130461151 + LTR16B LTR ERVL 1 464 0 24 0 0 0 chrX 32139708 32139732 -130460198 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 32140790 32140821 -130459109 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chrX 32141060 32141090 -130458840 + AT_rich Low_complexity Low_complexity 1 30 0 404 283 0 0 chrX 32141387 32141493 -130458437 + MER5C DNA MER1_type 13 118 -206 319 183 0 61 chrX 32141636 32141718 -130458212 + MER5C DNA MER1_type 248 324 0 1129 197 22 18 chrX 32141726 32141949 -130457981 + MER58A DNA MER1_type 1 224 0 2544 42 3 6 chrX 32141971 32142283 -130457647 - AluY SINE Alu 0 311 1 560 269 41 12 chrX 32142301 32142543 -130457387 + MER112 DNA MER1_type 12 260 0 27 29 0 0 chrX 32142567 32142601 -130457329 + AT_rich Low_complexity Low_complexity 1 34 0 915 209 25 10 chrX 32143170 32143371 -130456559 + MER63A DNA MER1_type 1 204 -6 3038 197 7 68 chrX 32143471 32143794 -130456136 + MER82 DNA MER2_type 2 262 -391 2437 80 0 3 chrX 32143794 32144106 -130455824 + AluY SINE Alu 1 311 0 3038 197 7 68 chrX 32144106 32144476 -130455454 + MER82 DNA MER2_type 262 653 0 3318 106 23 4 chrX 32144509 32145021 -130454909 - L1MA4 LINE L1 -6 6294 5773 5168 129 10 23 chrX 32145030 32146050 -130453880 - L1PA16 LINE L1 -10 6156 5130 2119 97 30 17 chrX 32146050 32146348 -130453582 - AluSq SINE Alu -11 302 1 5168 129 10 23 chrX 32146348 32146983 -130452947 - L1PA16 LINE L1 -1036 5130 4488 7062 150 15 19 chrX 32147026 32147818 -130452112 - L1MA4 LINE L1 -516 5784 4990 1528 146 100 43 chrX 32147818 32148098 -130451832 - AluJo SINE Alu -16 296 1 7062 150 15 19 chrX 32148098 32149140 -130450790 - L1MA4 LINE L1 -1310 4990 3954 1251 243 39 99 chrX 32149646 32150160 -130449770 + LTR33 LTR ERVL 36 518 -3 1167 270 108 35 chrX 32150269 32151322 -130448608 - L1MC5 LINE L1 -859 7102 5860 306 0 0 0 chrX 32151322 32151356 -130448574 + (TG)n Simple_repeat Simple_repeat 2 35 0 1167 270 108 35 chrX 32151356 32151921 -130448009 - L1MC5 LINE L1 -2101 5860 5338 658 329 36 47 chrX 32151971 32152464 -130447466 - LTR16C LTR ERVL 0 491 4 331 217 0 0 chrX 32153289 32153349 -130446581 - MER81 DNA DNA -2 112 53 530 137 59 39 chrX 32153473 32153575 -130446355 - MER5A DNA MER1_type -77 112 9 2301 95 0 0 chrX 32153663 32153957 -130445973 - AluSx SINE Alu -5 307 14 411 75 0 0 chrX 32154027 32154080 -130445850 - Alu SINE Alu -257 53 1 204 182 0 0 chrX 32154976 32155020 -130444910 + (TA)n Simple_repeat Simple_repeat 1 44 0 29 0 0 0 chrX 32155076 32155105 -130444825 + AT_rich Low_complexity Low_complexity 1 29 0 1470 203 57 21 chrX 32155512 32155926 -130444004 - L1ME1 LINE L1 -8 6158 5736 21 36 0 0 chrX 32156085 32156113 -130443817 + AT_rich Low_complexity Low_complexity 1 28 0 596 174 35 0 chrX 32157196 32157311 -130442619 - MER94 DNA DNA -14 120 2 2356 84 0 19 chrX 32157410 32157719 -130442211 - AluSq SINE Alu -10 303 1 642 273 28 17 chrX 32157790 32157966 -130441964 + MER5B DNA MER1_type 1 178 0 574 296 80 11 chrX 32160200 32160662 -130439268 + L1MEc LINE L1 1257 1750 -4646 598 228 120 46 chrX 32160814 32161055 -130438875 - LTR50 LTR ERVL -150 645 387 2575 161 9 0 chrX 32161202 32161630 -130438300 - MSTB1 LTR MaLR 0 432 1 6256 210 16 6 chrX 32161630 32162891 -130437039 - MSTB1-int LTR MaLR 0 1651 375 1022 47 0 0 chrX 32162891 32163020 -130436910 + L1PA4 LINE L1 6024 6152 -3 477 214 9 0 chrX 32163105 32163217 -130436713 - MER58A DNA MER1_type -17 207 95 234 216 0 0 chrX 32163249 32163300 -130436630 - MER58A DNA MER1_type -9 98 48 2058 174 3 0 chrX 32163310 32163683 -130436247 - MSTB1-int LTR MaLR -1277 374 1 309 115 0 19 chrX 32163683 32163735 -130436195 - MLT2B3 LTR ERVL 0 520 470 1714 183 25 109 chrX 32163772 32164343 -130435587 - MLT2B3 LTR ERVL -40 508 1 589 159 127 0 chrX 32164345 32164471 -130435459 - LTR50 LTR ERVL -649 146 5 419 332 220 15 chrX 32165580 32166525 -130433405 + L2 LINE L2 1623 2761 -553 657 289 68 25 chrX 32167387 32167622 -130432308 - MIR SINE MIR -15 247 3 1405 258 143 15 chrX 32167648 32168109 -130431821 + MLT1E LTR MaLR 11 530 -63 22 35 0 0 chrX 32168109 32168138 -130431792 + AT_rich Low_complexity Low_complexity 1 29 0 1500 126 142 0 chrX 32168162 32168408 -130431522 - AluSx SINE Alu -27 285 5 543 252 9 0 chrX 32169215 32169326 -130430604 - MER81 DNA DNA -2 112 1 233 255 0 0 chrX 32169748 32169795 -130430135 - L3 LINE CR1 -13 1564 1518 402 213 37 19 chrX 32169898 32170006 -130429924 + MER103 DNA DNA 3 112 -54 279 213 27 27 chrX 32170012 32170087 -130429843 + MER5B DNA MER1_type 21 95 -83 2086 158 10 7 chrX 32170142 32170553 -130429377 - L1MA8 LINE L1 -1316 4830 4419 * 5401 126 51 20 chrX 32170547 32171275 -130428655 + L1MA8 LINE L1 4852 5556 -735 2285 93 0 13 chrX 32171275 32171587 -130428343 + AluSc SINE Alu 1 308 -1 5401 126 51 20 chrX 32171587 32172247 -130427683 + L1MA8 LINE L1 5556 6291 0 1907 158 7 0 chrX 32172250 32172541 -130427389 + AluJb SINE Alu 1 293 -19 246 250 0 28 chrX 32172573 32172645 -130427285 + MER103 DNA DNA 91 160 -6 252 167 0 0 chrX 32172652 32172700 -130427230 + CT-rich Low_complexity Low_complexity 1 48 0 844 213 44 41 chrX 32172848 32173163 -130426767 - L1MC5 LINE L1 -35 7926 7611 229 231 15 15 chrX 32173166 32173231 -130426699 - L1M4 LINE L1 -1584 4562 4498 420 261 0 0 chrX 32173415 32173524 -130426406 - L1ME2 LINE L1 -3 6331 6061 240 224 0 0 chrX 32173526 32173575 -130426355 - L1ME2 LINE L1 -55 6109 6061 679 316 68 42 chrX 32174468 32174851 -130425079 - LTR16C LTR ERVL 0 491 99 363 334 102 39 chrX 32175148 32175480 -130424450 + L2 LINE L2 2920 3272 0 1053 223 25 0 chrX 32175610 32175852 -130424078 - MER90 LTR ERV1 0 614 367 610 316 14 5 chrX 32175880 32176098 -130423832 - MER90 LTR ERV1 -386 228 9 373 370 39 0 chrX 32176642 32176769 -130423161 - L2 LINE L2 -5 3267 3136 685 209 329 59 chrX 32176939 32177113 -130422817 - L1MC4 LINE L1 0 8042 7916 3386 85 17 0 chrX 32177113 32177586 -130422344 - L1PB1 LINE L1 0 6151 5671 685 209 329 59 chrX 32177586 32177870 -130422060 - L1MC4 LINE L1 -126 7916 7460 719 222 58 62 chrX 32178903 32179160 -130420770 - MIR SINE MIR 0 262 7 714 172 0 23 chrX 32180922 32181050 -130418880 + FLAM_A SINE Alu 3 127 -6 791 255 81 13 chrX 32181180 32181415 -130418515 - MIR SINE MIR -9 253 3 860 283 78 62 chrX 32181475 32182123 -130417807 + L2 LINE L2 2623 3267 -5 191 331 206 25 chrX 32182172 32182332 -130417598 - L2 LINE L2 -218 3054 2866 279 0 0 0 chrX 32182807 32182838 -130417092 + (CA)n Simple_repeat Simple_repeat 2 32 0 436 194 42 0 chrX 32185513 32185678 -130414252 + (GGGTG)n Simple_repeat Simple_repeat 3 174 0 4845 162 19 10 chrX 32185845 32187536 -130412394 - L1PB4 LINE L1 -3 6153 4450 488 192 100 0 chrX 32187759 32187879 -130412051 - MER94 DNA DNA -2 132 1 502 342 86 5 chrX 32189201 32189423 -130410507 + MIR SINE MIR 14 253 -9 656 286 57 79 chrX 32189913 32190371 -130409559 - LTR16A1 LTR ERVL -2 455 8 619 191 17 0 chrX 32191167 32191282 -130408648 + MER20 DNA MER1_type 1 117 -102 272 65 0 87 chrX 32191506 32191552 -130408378 + MER20 DNA MER1_type 178 219 0 1691 208 76 48 chrX 32191562 32192037 -130407893 - LTR16C LTR ERVL 0 491 4 484 296 13 19 chrX 32192197 32192356 -130407574 - L3 LINE CR1 -21 1556 1399 812 276 46 14 chrX 32192370 32192587 -130407343 + MIR SINE MIR 35 258 -4 317 287 0 50 chrX 32193429 32193530 -130406400 + L1MC4 LINE L1 6608 6703 -1339 * 354 253 23 0 chrX 32193453 32193540 -130406390 - L1MC4 LINE L1 -1340 6702 6614 192 40 0 0 chrX 32193542 32193567 -130406363 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 32194582 32194604 -130405326 + AT_rich Low_complexity Low_complexity 1 22 0 626 290 0 6 chrX 32195327 32195496 -130404434 + LTR16A LTR ERVL 13 180 -270 1067 241 38 73 chrX 32195530 32195925 -130404005 + L2 LINE L2 2933 3313 0 206 250 0 23 chrX 32196019 32196063 -130403867 + MIR SINE MIR 7 49 -213 944 223 67 5 chrX 32196079 32196303 -130403627 - MIR SINE MIR -10 252 15 420 344 88 18 chrX 32196247 32196474 -130403456 + MIR SINE MIR 19 261 -1 * 1325 253 8 83 chrX 32196903 32197114 -130402816 + LTR16A LTR ERVL 16 241 -209 6129 78 24 20 chrX 32197114 32197974 -130401956 + L1PB1 LINE L1 4912 5768 -383 405 0 0 0 chrX 32197974 32198019 -130401911 + (TA)n Simple_repeat Simple_repeat 2 46 0 6129 78 24 20 chrX 32198019 32198264 -130401666 + L1PB1 LINE L1 5768 6023 -128 2138 93 41 3 chrX 32198264 32198554 -130401376 + AluSx SINE Alu 1 301 -11 6129 78 24 20 chrX 32198554 32198683 -130401247 + L1PB1 LINE L1 6023 6150 -1 1325 253 8 83 chrX 32198683 32198941 -130400989 + LTR16A LTR ERVL 241 450 0 2105 100 0 28 chrX 32199638 32199971 -130399959 + AluSx SINE Alu 1 325 0 440 207 118 37 chrX 32200855 32200990 -130398940 + MER5A DNA MER1_type 43 188 -1 1358 188 49 36 chrX 32201223 32201552 -130398378 + LTR16A1 LTR ERVL 68 400 -57 3617 143 60 23 chrX 32201552 32201832 -130398098 + L1MA9 LINE L1 5494 5762 -550 390 21 0 0 chrX 32201832 32201879 -130398051 + (CA)n Simple_repeat Simple_repeat 2 48 0 3617 143 60 23 chrX 32201879 32202333 -130397597 + L1MA9 LINE L1 5762 6255 -57 416 345 42 45 chrX 32202412 32202699 -130397231 + L1MDa LINE L1 2 287 -6253 3848 208 77 58 chrX 32203292 32203610 -130396320 + L1MDa LINE L1 909 1220 -5320 1175 83 6 0 chrX 32203610 32203778 -130396152 + L1MA3 LINE L1 6132 6300 -5 3848 208 77 58 chrX 32203778 32205300 -130394630 + L1MDa LINE L1 1220 2733 -3807 278 257 69 50 chrX 32205652 32205753 -130394177 + MIR SINE MIR 146 248 -14 276 286 143 0 chrX 32207415 32207548 -130392382 + MER117 DNA MER1_type 46 197 0 5983 101 26 1 chrX 32209151 32210174 -130389756 + L1PA15 LINE L1 5120 6164 -1 1195 230 28 62 chrX 32210781 32210925 -130389005 + LTR16C LTR ERVL 146 293 -198 1117 196 48 104 chrX 32210925 32211282 -130388648 - MER58B DNA MER1_type -4 337 1 1195 230 28 62 chrX 32211282 32211362 -130388568 + LTR16C LTR ERVL 293 374 -117 2162 151 0 0 chrX 32211362 32211673 -130388257 - AluJb SINE Alu -1 311 1 1195 230 28 62 chrX 32211673 32211803 -130388127 + LTR16C LTR ERVL 374 489 -2 7190 105 39 8 chrX 32211913 32213084 -130386846 - Tigger3b DNA MER2_type 0 1231 24 249 33 0 0 chrX 32214852 32214882 -130385048 + (CA)n Simple_repeat Simple_repeat 2 31 0 268 255 98 36 chrX 32215782 32215920 -130384010 + L1ME LINE L1 5669 5818 -303 367 202 36 12 chrX 32216932 32217016 -130382914 - MIR3 SINE MIR -1 207 122 1347 153 37 29 chrX 32217033 32217275 -130382655 + AluJo SINE Alu 46 289 -23 2122 136 3 3 chrX 32217308 32217618 -130382312 - AluSx SINE Alu -2 310 1 22 0 0 0 chrX 32217618 32217640 -130382290 + AT_rich Low_complexity Low_complexity 1 22 0 2625 94 3 0 chrX 32217673 32218025 -130381905 - THE1A LTR MaLR -2 353 1 2189 104 0 57 chrX 32218611 32218927 -130381003 - AluSx SINE Alu -14 298 1 477 47 0 0 chrX 32219217 32219281 -130380649 + (TG)n Simple_repeat Simple_repeat 1 64 0 2058 186 104 90 chrX 32219818 32220472 -130379458 - MLT2F LTR ERVL 0 663 1 1629 254 90 35 chrX 32220677 32221241 -130378689 + MLT1G1 LTR MaLR 1 595 0 6951 26 0 0 chrX 32221395 32222241 -130377689 - L1PA3 LINE L1 -2 6153 5308 3735 43 0 0 chrX 32222242 32222727 -130377203 + L1PA3 LINE L1 4802 5286 -860 1546 154 42 14 chrX 32222727 32223013 -130376917 - L1MD2 LINE L1 0 6359 6066 703 165 35 0 chrX 32223013 32223128 -130376802 + FLAM_C SINE Alu 3 121 -22 2442 176 51 41 chrX 32223153 32223717 -130376213 - L1MD1 LINE L1 -165 6077 5508 444 244 17 17 chrX 32224381 32224500 -130375430 - Charlie8 DNA MER1_type -2156 261 143 1136 232 73 6 chrX 32224774 32225101 -130374829 + L1ME2 LINE L1 5305 5653 -509 1655 109 10 58 chrX 32225352 32225646 -130374284 - L1PA13 LINE L1 -3 6160 5881 5771 63 6 4 chrX 32225668 32226457 -130373473 - L1PB1 LINE L1 0 6151 5361 421 171 0 0 chrX 32226457 32226545 -130373385 + L1P LINE L1 5218 5305 -841 * 1796 174 73 59 chrX 32226540 32226858 -130373072 + L1ME2 LINE L1 5625 5954 -210 1706 171 39 0 chrX 32226858 32226978 -130372952 + AluJb SINE Alu 1 115 -197 351 0 0 0 chrX 32226978 32227017 -130372913 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1706 171 39 0 chrX 32227017 32227176 -130372754 + AluJb SINE Alu 115 291 -21 1796 174 73 59 chrX 32227176 32227379 -130372551 + L1ME2 LINE L1 5954 6153 -11 529 309 100 22 chrX 32227624 32227854 -130372076 + MIR SINE MIR 2 249 -13 2255 52 6 0 chrX 32228347 32228821 -130371109 - L1PA5 LINE L1 -597 5557 5081 5084 38 2 0 chrX 32228821 32229426 -130370504 + L1PA5 LINE L1 5547 6153 -1 25 31 0 0 chrX 32230010 32230042 -130369888 + AT_rich Low_complexity Low_complexity 1 32 0 30 59 0 0 chrX 32230259 32230310 -130369620 + AT_rich Low_complexity Low_complexity 1 51 0 258 56 0 0 chrX 32230430 32230466 -130369464 + (TG)n Simple_repeat Simple_repeat 1 36 0 744 31 0 20 chrX 32231161 32231259 -130368671 + L1PA8 LINE L1 6073 6168 -4 215 279 0 0 chrX 32232069 32232130 -130367800 + (CAT)n Simple_repeat Simple_repeat 3 63 0 246 62 0 0 chrX 32232973 32233005 -130366925 + (A)n Simple_repeat Simple_repeat 1 32 0 372 22 0 0 chrX 32233934 32233979 -130365951 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 10724 34 0 0 chrX 32234768 32236124 -130363806 - L1PA3 LINE L1 -1711 4435 3080 8099 23 0 0 chrX 32236124 32237840 -130362090 + L1PA3 LINE L1 4434 6148 -7 431 202 18 2 chrX 32237952 32238115 -130361815 + MER58A DNA MER1_type 25 223 -1 1171 189 23 14 chrX 32238183 32238400 -130361530 - MER20 DNA MER1_type 0 219 1 282 320 20 0 chrX 32240174 32240274 -130359656 - LTR67 LTR ERVL -368 189 88 * 1370 193 34 14 chrX 32240270 32240566 -130359364 - MLT2B3 LTR ERVL -252 302 1 812 283 94 54 chrX 32240567 32240783 -130359147 - MLT1G1 LTR MaLR -25 570 364 1373 204 136 5 chrX 32240783 32241195 -130358735 + MER110A LTR ERV1 3 468 0 812 283 94 54 chrX 32241195 32241484 -130358446 - MLT1G1 LTR MaLR -231 364 1 867 107 14 158 chrX 32241493 32241708 -130358222 - MER6 DNA MER2_type -9 856 673 1242 51 6 0 chrX 32241710 32241868 -130358062 + L1PA6 LINE L1 5987 6145 -9 2438 90 3 0 chrX 32242099 32242411 -130357519 - AluSp SINE Alu 0 313 1 226 187 93 67 chrX 32242556 32242631 -130357299 - L2 LINE L2 -8 3264 3188 907 287 46 51 chrX 32244171 32244328 -130355602 - L1MC4a LINE L1 -1871 5937 5781 2250 89 3 52 chrX 32244328 32244653 -130355277 - AluSg SINE Alu -1 309 1 907 287 46 51 chrX 32244653 32244930 -130355000 - L1MC4a LINE L1 -2027 5781 5505 1140 120 66 46 chrX 32245877 32245969 -130353961 + L1MB3 LINE L1 5938 6027 -156 2009 114 3 31 chrX 32245969 32246282 -130353648 - AluSg SINE Alu 0 305 1 1140 120 66 46 chrX 32246282 32246429 -130353501 + L1MB3 LINE L1 6027 6183 0 362 284 53 11 chrX 32246492 32246587 -130353343 - MIR SINE MIR -110 152 54 397 250 9 56 chrX 32246657 32246765 -130353165 + MIR3 SINE MIR 71 173 -35 263 177 81 0 chrX 32246765 32246827 -130353103 + MER112 DNA MER1_type 13 79 -181 246 62 0 0 chrX 32246827 32246859 -130353071 + (CCA)n Simple_repeat Simple_repeat 1 32 0 917 285 25 28 chrX 32246867 32247190 -130352740 - LTR16A1 LTR ERVL 0 457 136 632 221 0 22 chrX 32247198 32247334 -130352596 + MLT1F1 LTR MaLR 1 133 -409 1781 220 47 22 chrX 32247371 32247816 -130352114 + MLT1F1 LTR MaLR 110 565 -2 304 241 177 0 chrX 32247984 32248125 -130351805 + MER112 DNA MER1_type 90 255 -5 513 223 84 8 chrX 32248192 32248372 -130351558 - MIR SINE MIR 0 262 26 351 0 0 0 chrX 32249758 32249797 -130350133 + (TG)n Simple_repeat Simple_repeat 2 40 0 5224 126 12 1 chrX 32249862 32251299 -130348631 - L1MA3 LINE L1 -270 6035 4585 1840 108 7 3 chrX 32251463 32251759 -130348171 + HERVH LTR ERV1 7417 7713 0 1576 101 45 10 chrX 32251759 32252110 -130347820 + LTR7 LTR ERV1 1 412 -38 1753 234 87 24 chrX 32252170 32252675 -130347255 - MLT1H LTR MaLR 0 549 13 302 221 46 119 chrX 32252925 32253081 -130346849 - LTR33A LTR ERVL -372 151 38 26 0 0 0 chrX 32253614 32253640 -130346290 + AT_rich Low_complexity Low_complexity 1 26 0 620 228 76 6 chrX 32253908 32254066 -130345864 + L2 LINE L2 3145 3313 0 317 241 73 29 chrX 32254080 32254217 -130345713 - L1MC/D LINE L1 -2053 5755 5613 458 224 39 6 chrX 32255029 32255185 -130344745 - L1ME4a LINE L1 -1 6120 5960 488 282 68 18 chrX 32255474 32255637 -130344293 + MER5B DNA MER1_type 1 171 -7 337 344 9 23 chrX 32255650 32255865 -130344065 + L2 LINE L2 2546 2757 -557 2610 130 16 37 chrX 32255959 32256396 -130343534 - MSTC LTR MaLR 0 428 1 1134 285 84 33 chrX 32256603 32257079 -130342851 - L2 LINE L2 0 3313 2798 2220 122 0 0 chrX 32257079 32257374 -130342556 - AluSx SINE Alu -17 295 1 1134 285 84 33 chrX 32257374 32257577 -130342353 - L2 LINE L2 -515 2798 2607 218 324 106 28 chrX 32257628 32257807 -130342123 + L2 LINE L2 2758 2950 -364 1865 189 51 35 chrX 32257832 32258286 -130341644 - L1MB5 LINE L1 -15 6159 5699 1856 151 28 100 chrX 32258356 32258854 -130341076 - MLT1C LTR MaLR -5 462 1 284 289 8 58 chrX 32258858 32258979 -130340951 - MER5A DNA MER1_type -53 136 22 615 219 0 0 chrX 32258980 32259094 -130340836 - MER81 DNA DNA 0 114 1 451 288 59 12 chrX 32259574 32259744 -130340186 + MER5B DNA MER1_type 1 178 0 3248 143 28 5 chrX 32260164 32260744 -130339186 - L1MB7 LINE L1 -16 6168 5576 231 133 0 0 chrX 32261328 32261373 -130338557 + (CCTCG)n Simple_repeat Simple_repeat 5 49 0 255 31 0 0 chrX 32261543 32261575 -130338355 + (CCCCG)n Simple_repeat Simple_repeat 1 32 0 230 0 0 32 chrX 32261598 32261629 -130338301 + (CCG)n Simple_repeat Simple_repeat 1 30 0 306 73 0 0 chrX 32262651 32262692 -130337238 + (GGA)n Simple_repeat Simple_repeat 1 41 0 409 179 0 12 chrX 32263988 32264072 -130335858 - L1MB8 LINE L1 -1 6177 6095 3569 178 40 32 chrX 32264116 32265152 -130334778 - L1MB8 LINE L1 -75 6103 5058 312 214 54 0 chrX 32265211 32265267 -130334663 + L2 LINE L2 3246 3304 -9 2228 79 0 4 chrX 32265316 32265622 -130334308 - AluSc SINE Alu 0 305 1 1034 171 26 0 chrX 32265915 32266108 -130333822 + MER20 DNA MER1_type 3 200 -19 216 67 0 0 chrX 32266529 32266559 -130333371 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 23 33 0 0 chrX 32266781 32266811 -130333119 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 32267169 32267198 -130332732 + AT_rich Low_complexity Low_complexity 1 29 0 2718 97 6 0 chrX 32267290 32267652 -130332278 - THE1B LTR MaLR 0 364 1 4297 238 118 37 chrX 32267768 32269920 -130330010 - HAL1 LINE L1 -139 2368 1 591 58 0 23 chrX 32271080 32271167 -130328763 - L1PB4 LINE L1 -4 6152 6068 491 262 58 23 chrX 32271351 32271523 -130328407 - MER5B DNA MER1_type 0 178 1 342 310 35 28 chrX 32271732 32271874 -130328056 - MER5A DNA MER1_type -18 171 29 429 253 95 32 chrX 32273003 32273161 -130326769 + MIR SINE MIR 24 191 -71 200 274 0 0 chrX 32273244 32273295 -130326635 + L2 LINE L2 3263 3313 0 3550 161 38 1 chrX 32273519 32274185 -130325745 - L1MC3 LINE L1 -1 7784 7095 488 365 67 6 chrX 32274375 32274740 -130325190 + L1M4 LINE L1 4184 4570 -1576 2629 209 48 22 chrX 32274906 32275484 -130324446 + MLT1E LTR MaLR 1 593 0 225 316 102 0 chrX 32275491 32275735 -130324195 + L1M4 LINE L1 4758 5026 -1120 24 67 0 0 chrX 32275811 32275856 -130324074 + AT_rich Low_complexity Low_complexity 1 45 0 235 145 53 105 chrX 32275989 32276065 -130323865 - MER5C DNA MER1_type -252 72 1 1084 177 70 33 chrX 32276074 32276289 -130323641 - MER58A DNA MER1_type -1 223 1 842 126 116 5 chrX 32276443 32276633 -130323297 + MER33 DNA MER1_type 43 253 -71 215 381 37 0 chrX 32277189 32277323 -130322607 - L2 LINE L2 -846 2468 2330 2787 15 15 0 chrX 32277593 32277917 -130322013 + L1PA4 LINE L1 5827 6155 0 347 269 8 0 chrX 32278916 32279046 -130320884 + (TA)n Simple_repeat Simple_repeat 1 131 0 2096 92 35 21 chrX 32279392 32279676 -130320254 + AluSx SINE Alu 1 288 -24 1088 161 150 0 chrX 32280173 32280366 -130319564 + MER58A DNA MER1_type 2 223 -1 411 298 46 0 chrX 32280735 32280866 -130319064 - MIR SINE MIR -15 247 111 2658 63 22 17 chrX 32281335 32281697 -130318233 - THE1B LTR MaLR 0 364 1 211 367 25 0 chrX 32283316 32283395 -130316535 + L2 LINE L2 2971 3051 -221 481 254 202 48 chrX 32283533 32283805 -130316125 - L2 LINE L2 -3 3310 2997 2489 90 0 0 chrX 32284036 32284346 -130315584 - AluY SINE Alu 0 311 2 302 278 38 60 chrX 32284749 32284882 -130315048 - L1ME3A LINE L1 -36 6134 6005 679 240 173 8 chrX 32285022 32285497 -130314433 - L1ME3A LINE L1 -217 5947 5359 32 106 0 0 chrX 32285575 32285698 -130314232 + AT_rich Low_complexity Low_complexity 1 123 0 1845 173 62 37 chrX 32285707 32286133 -130313797 + MSTB1 LTR MaLR 1 375 0 1169 178 0 23 chrX 32287097 32287316 -130312614 + MER20 DNA MER1_type 6 219 0 435 214 0 0 chrX 32287475 32287559 -130312371 - L1ME1 LINE L1 -22 6213 6130 385 283 148 12 chrX 32289310 32289642 -130310288 - L1ME1 LINE L1 -195 5995 5619 258 224 79 0 chrX 32290124 32290200 -130309730 - L1ME1 LINE L1 -2316 3899 3818 1192 171 43 14 chrX 32290204 32290415 -130309515 - AluJo SINE Alu -12 300 84 3971 241 51 57 chrX 32290418 32291958 -130307972 - L1ME1 LINE L1 -2391 3824 2276 2296 120 120 5 chrX 32291958 32292341 -130307589 - MSTA LTR MaLR 0 428 2 3971 241 51 57 chrX 32292341 32292818 -130307112 - L1ME1 LINE L1 -3939 2276 1797 313 62 0 0 chrX 32292818 32292866 -130307064 - L1MA3 LINE L1 0 6305 6258 3971 241 51 57 chrX 32292866 32293454 -130306476 - L1ME1 LINE L1 -4418 1797 1256 2292 168 70 131 chrX 32293443 32293596 -130306334 - L1MC4a LINE L1 -1077 6731 6570 * 1736 197 49 21 chrX 32293596 32293981 -130305949 + MSTD LTR MaLR 1 396 0 2292 168 70 131 chrX 32293981 32294264 -130305666 - L1MC4a LINE L1 -1238 6570 6271 218 56 28 0 chrX 32294264 32294300 -130305630 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2292 168 70 131 chrX 32294300 32294771 -130305159 - L1MC4a LINE L1 -1537 6271 5878 534 203 6 80 chrX 32294818 32294981 -130304949 - L1MA9 LINE L1 -29 6283 6133 * 1013 228 39 17 chrX 32294978 32295287 -130304643 - L1MC4a LINE L1 -356 5818 5586 526 207 170 7 chrX 32296709 32296844 -130303086 + MER5A DNA MER1_type 32 188 -1 3259 207 5 15 chrX 32297183 32297841 -130302089 - MER82 DNA MER2_type -1 652 2 186 357 71 0 chrX 32298637 32298707 -130301223 + L2 LINE L2 3142 3216 -56 294 253 13 0 chrX 32299096 32299171 -130300759 + L1ME LINE L1 5785 5860 -310 456 253 106 46 chrX 32301778 32302138 -130297792 - MLT1H LTR MaLR -8 541 96 421 251 100 80 chrX 32302426 32302713 -130297217 + L1M4 LINE L1 5111 5427 -694 520 279 66 0 chrX 32302766 32302949 -130296981 - L2 LINE L2 -198 3115 2921 3652 159 68 9 chrX 32303061 32303871 -130296059 + L1MB7 LINE L1 5182 6037 -147 218 140 35 0 chrX 32303908 32303965 -130295965 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 6586 16 4 0 chrX 32303969 32304758 -130295172 - L1PA3 LINE L1 -3 6152 5361 13134 22 0 0 chrX 32304759 32306373 -130293557 + L1PA3 LINE L1 3745 5358 -788 662 272 23 0 chrX 32307547 32307720 -130292210 - MER5A DNA MER1_type -1 188 12 459 67 17 0 chrX 32308310 32308370 -130291560 + U7 snRNA snRNA 2 62 -1 26 0 0 0 chrX 32308376 32308402 -130291528 + AT_rich Low_complexity Low_complexity 1 26 0 31 68 0 0 chrX 32308679 32308738 -130291192 + AT_rich Low_complexity Low_complexity 1 59 0 355 285 218 14 chrX 32308807 32309238 -130290692 - L1ME4a LINE L1 -82 6039 5521 384 178 0 0 chrX 32309680 32309753 -130290177 + (TA)n Simple_repeat Simple_repeat 2 74 0 959 249 41 16 chrX 32310212 32310457 -130289473 - MIR SINE MIR -10 252 2 871 182 36 0 chrX 32310569 32310734 -130289196 + MER5B DNA MER1_type 7 177 -1 231 273 40 30 chrX 32311924 32312023 -130287907 - L1ME3A LINE L1 -106 6064 5965 3418 230 139 28 chrX 32312595 32314284 -130285646 - HAL1 LINE L1 -629 1878 3 402 296 216 5 chrX 32314359 32314558 -130285372 - MIR SINE MIR -12 250 10 22 0 0 0 chrX 32315801 32315823 -130284107 + AT_rich Low_complexity Low_complexity 1 22 0 405 237 149 9 chrX 32316007 32316137 -130283793 + MIR SINE MIR 3 150 -62 1129 195 43 17 chrX 32316241 32316472 -130283458 - MIR SINE MIR -17 245 9 1512 36 31 5 chrX 32316558 32316750 -130283180 + MER107 DNA MER1_type 1 197 0 711 184 163 11 chrX 32317071 32317261 -130282669 - MER58A DNA MER1_type 0 224 6 1098 184 134 25 chrX 32317314 32317679 -130282251 - LTR37A LTR ERV1 0 426 22 260 371 0 9 chrX 32317686 32317802 -130282128 - MER5A DNA MER1_type -74 115 1 422 210 74 0 chrX 32320961 32321042 -130278888 + L2 LINE L2 3169 3255 -17 1257 197 58 52 chrX 32322373 32322682 -130277248 + AluJo SINE Alu 1 311 -1 864 265 168 20 chrX 32323463 32323690 -130276240 + L2 LINE L2 1976 2168 -1146 473 96 12 48 chrX 32323690 32323773 -130276157 - MADE1 DNA Mariner 0 80 1 864 265 168 20 chrX 32323773 32323896 -130276034 + L2 LINE L2 2168 2378 -936 937 179 18 12 chrX 32324850 32325018 -130274912 - MER5B DNA MER1_type -2 176 8 198 337 12 12 chrX 32325311 32325394 -130274536 - MIR SINE MIR -166 96 14 839 206 69 0 chrX 32325394 32325583 -130274347 + MLT1J2 LTR MaLR 1 202 -248 314 326 159 25 chrX 32325753 32326106 -130273824 - L2 LINE L2 -1697 1617 1218 344 301 43 0 chrX 32326112 32326205 -130273725 + L2 LINE L2 3172 3268 -4 * 687 301 149 41 chrX 32326190 32326748 -130273182 - L2 LINE L2 -2380 934 317 275 302 64 62 chrX 32326992 32327288 -130272642 - MLT1H LTR MaLR -209 340 8 226 219 167 10 chrX 32327478 32327574 -130272356 + MIR SINE MIR 102 212 -50 222 105 0 0 chrX 32328431 32328469 -130271461 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 593 175 43 13 chrX 32329112 32329328 -130270602 - MER33 DNA MER1_type 0 324 23 1275 198 206 11 chrX 32331465 32331829 -130268101 - MER101 LTR ERV1 -32 442 8 398 315 159 43 chrX 32332994 32333270 -130266660 - L3 LINE CR1 -31 1546 1239 640 280 124 9 chrX 32335724 32335949 -130263981 - MIR SINE MIR -1 261 11 306 0 0 0 chrX 32336170 32336204 -130263726 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1983 109 72 7 chrX 32336756 32337049 -130262881 - AluSx SINE Alu 0 312 1 636 249 83 10 chrX 32338438 32338643 -130261287 - MER112 DNA MER1_type -40 220 1 636 246 42 37 chrX 32339266 32339457 -130260473 - MIR SINE MIR -15 247 56 229 230 106 115 chrX 32340487 32340600 -130259330 - MIR SINE MIR -123 139 28 472 255 174 19 chrX 32340979 32341191 -130258739 - MIR SINE MIR -11 251 7 215 208 222 0 chrX 32341805 32341877 -130258053 - MIR SINE MIR -91 171 84 216 329 29 57 chrX 32342441 32342581 -130257349 - L2 LINE L2 -18 3295 3160 877 242 45 18 chrX 32342797 32343020 -130256910 + MIR SINE MIR 13 241 -21 2287 68 0 31 chrX 32343649 32343973 -130255957 + AluY SINE Alu 1 315 0 640 192 8 25 chrX 32344714 32344834 -130255096 + MIR3 SINE MIR 46 163 -45 792 277 32 36 chrX 32344844 32345097 -130254833 - MIR SINE MIR -1 261 10 554 147 105 11 chrX 32345518 32345613 -130254317 + FLAM_A SINE Alu 16 119 -23 21 36 0 0 chrX 32345918 32345946 -130253984 + AT_rich Low_complexity Low_complexity 1 28 0 1014 87 0 0 chrX 32347384 32347511 -130252419 - AluSq/x SINE Alu -185 127 1 195 356 68 25 chrX 32347592 32347710 -130252220 - L2 LINE L2 -12 3301 3179 292 341 43 7 chrX 32348052 32348235 -130251695 + MIR SINE MIR 1 190 -63 251 282 118 27 chrX 32348424 32348534 -130251396 - L1ME2 LINE L1 -99 6065 5946 1736 158 4 11 chrX 32348568 32348846 -130251084 - AluJo SINE Alu -36 276 1 1175 126 18 0 chrX 32348865 32349032 -130250898 + AluSp SINE Alu 134 303 -10 28 61 0 0 chrX 32349104 32349153 -130250777 + AT_rich Low_complexity Low_complexity 1 49 0 213 39 0 0 chrX 32351142 32351168 -130248762 + (TA)n Simple_repeat Simple_repeat 1 26 0 2346 68 0 10 chrX 32351278 32351570 -130248360 + AluY SINE Alu 1 289 -22 215 324 29 20 chrX 32351642 32351744 -130248186 - L2 LINE L2 -218 3054 2952 521 170 11 11 chrX 32352528 32352622 -130247308 - L3 LINE CR1 -148 1429 1336 359 277 13 50 chrX 32353115 32353274 -130246656 + MIR SINE MIR 2 154 -108 1259 8 0 0 chrX 32353865 32353999 -130245931 - L1PA5 LINE L1 -5 6149 6016 286 221 12 58 chrX 32354283 32354369 -130245561 + MIR SINE MIR 164 245 -17 974 247 206 12 chrX 32354740 32355368 -130244562 - L2 LINE L2 0 3313 2551 194 320 117 0 chrX 32357708 32357811 -130242119 - MIR3 SINE MIR -3 205 91 1932 148 3 10 chrX 32358283 32358574 -130241356 - AluJo SINE Alu -23 289 1 375 89 0 0 chrX 32359093 32359149 -130240781 + (CA)n Simple_repeat Simple_repeat 1 56 0 627 299 0 17 chrX 32359568 32359742 -130240188 - MIR3 SINE MIR -15 193 23 864 160 0 8 chrX 32359759 32359890 -130240040 - FLAM_A SINE Alu -3 130 1 2325 107 0 19 chrX 32359909 32360227 -130239703 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 32360362 32360390 -130239540 + AT_rich Low_complexity Low_complexity 1 28 0 180 297 99 27 chrX 32362905 32363016 -130236914 - MIR3 SINE MIR -3 205 87 3736 71 31 2 chrX 32363130 32363247 -130236683 + L1PB1 LINE L1 5660 5772 -379 399 21 0 0 chrX 32363247 32363295 -130236635 + (CA)n Simple_repeat Simple_repeat 2 49 0 3736 71 31 2 chrX 32363295 32363654 -130236276 + L1PB1 LINE L1 5772 6150 -1 237 275 116 0 chrX 32364361 32364430 -130235500 - L2 LINE L2 -22 3250 3174 2485 74 0 6 chrX 32366684 32366995 -130232935 - AluY SINE Alu -2 309 1 24 32 0 0 chrX 32367477 32367508 -130232422 + AT_rich Low_complexity Low_complexity 1 31 0 426 239 34 62 chrX 32367919 32368095 -130231835 + MER5B DNA MER1_type 4 174 -4 247 317 65 41 chrX 32368219 32368342 -130231588 + MIR3 SINE MIR 74 199 -9 2473 139 76 9 chrX 32368601 32369047 -130230883 - L1MA6 LINE L1 -345 5955 5480 1894 116 51 14 chrX 32369047 32369338 -130230592 + L1MA6 LINE L1 5996 6298 -2 324 299 120 22 chrX 32369368 32369552 -130230378 - MIR SINE MIR -30 232 31 552 324 43 51 chrX 32370677 32371029 -130228901 + L3 LINE CR1 1071 1419 -158 1599 171 7 24 chrX 32371856 32372143 -130227787 + AluJb SINE Alu 1 282 -30 31 0 0 0 chrX 32372404 32372435 -130227495 + AT_rich Low_complexity Low_complexity 1 31 0 2088 130 0 16 chrX 32373460 32373768 -130226162 - AluSx SINE Alu -9 303 1 357 207 86 26 chrX 32375044 32375160 -130224770 - L1MC4 LINE L1 -2 8040 7918 1202 151 11 0 chrX 32375165 32375344 -130224586 - MER58A DNA MER1_type -2 222 42 686 275 63 10 chrX 32377215 32377422 -130222508 + MIR SINE MIR 13 230 -32 530 255 15 90 chrX 32378917 32379117 -130220813 - MER5A DNA MER1_type -1 188 4 299 112 0 3 chrX 32379613 32379836 -130220094 + AluSx SINE Alu 1 300 0 1408 101 10 5 chrX 32380022 32380221 -130219709 + L1PA13 LINE L1 5945 6144 -19 405 0 0 0 chrX 32380635 32380680 -130219250 + (TC)n Simple_repeat Simple_repeat 2 46 0 242 209 215 25 chrX 32380975 32381138 -130218792 + L1MC5 LINE L1 7724 7917 -44 26 30 0 0 chrX 32382271 32382304 -130217626 + AT_rich Low_complexity Low_complexity 1 33 0 411 246 33 8 chrX 32382450 32382572 -130217358 - L1ME3A LINE L1 -5 6165 6041 307 309 87 8 chrX 32385300 32385426 -130214504 + MIR SINE MIR 50 185 -77 1888 139 0 0 chrX 32385433 32385692 -130214238 + AluSx SINE Alu 1 259 -53 371 206 0 0 chrX 32385703 32385766 -130214164 - MER2 DNA MER2_type -1 344 282 1338 143 0 0 chrX 32385794 32386004 -130213926 - MER2 DNA MER2_type -135 210 1 300 269 50 35 chrX 32386509 32386650 -130213280 + MER5A DNA MER1_type 24 166 -23 * 809 182 0 7 chrX 32386529 32386672 -130213258 - MER5A DNA MER1_type -35 154 13 34 0 0 0 chrX 32387606 32387640 -130212290 + AT_rich Low_complexity Low_complexity 1 34 0 2104 214 87 44 chrX 32390245 32390955 -130208975 - L1ME3 LINE L1 -1 6161 5421 534 206 94 0 chrX 32391118 32391278 -130208652 - L1ME3 LINE L1 -777 5369 5195 932 170 0 0 chrX 32391548 32391727 -130208203 + FRAM SINE Alu 1 178 0 231 276 26 0 chrX 32391925 32392001 -130207929 - MER5B DNA MER1_type -100 78 1 482 284 183 29 chrX 32392256 32393194 -130206736 - L1ME3 LINE L1 -2762 3384 2302 2114 165 59 63 chrX 32393827 32394337 -130205593 - LTR54 LTR ERV1 -2 508 1 226 291 55 55 chrX 32394540 32394650 -130205280 + L2 LINE L2 3163 3272 0 22 35 0 0 chrX 32395146 32395175 -130204755 + AT_rich Low_complexity Low_complexity 1 29 0 1359 253 113 34 chrX 32395406 32395901 -130204029 - MLT1F LTR MaLR -8 534 1 2332 106 0 6 chrX 32396026 32396338 -130203592 - AluSg SINE Alu 0 310 1 219 151 0 57 chrX 32396414 32396467 -130203463 + T-rich Low_complexity Low_complexity 6 55 0 235 269 120 65 chrX 32396792 32396900 -130203030 + L3 LINE CR1 1091 1204 -373 253 358 68 11 chrX 32396976 32397152 -130202778 + L2 LINE L2 2110 2295 -1019 3829 101 39 17 chrX 32397271 32397858 -130202072 - LTR43 LTR ERV1 0 602 3 390 240 12 146 chrX 32397886 32398057 -130201873 - L2 LINE L2 -3 3310 3163 1689 152 39 23 chrX 32398575 32398713 -130201217 - LTR23 LTR ERV1 0 467 333 1861 134 0 36 chrX 32398713 32399019 -130200911 - AluJb SINE Alu -17 295 1 1689 152 39 23 chrX 32399019 32399308 -130200622 - LTR23 LTR ERV1 -134 333 1 460 236 170 24 chrX 32399369 32399534 -130200396 + MER5A DNA MER1_type 1 189 0 477 155 23 41 chrX 32399549 32399670 -130200260 - MER5B DNA MER1_type 0 178 1 199 273 18 0 chrX 32399809 32399864 -130200066 + L3b LINE CR1 1244 1299 -284 1701 157 20 14 chrX 32400388 32400682 -130199248 + AluJb SINE Alu 1 296 -16 4792 127 20 1 chrX 32401107 32401815 -130198115 + MER72 LTR ERV1 2 722 0 1720 229 51 14 chrX 32404055 32404562 -130195368 + L1ME3 LINE L1 5634 6159 -3 2857 153 59 41 chrX 32404581 32405075 -130194855 + L1MA9 LINE L1 5469 5978 -334 1782 151 46 3 chrX 32405075 32405360 -130194570 + AluSx SINE Alu 1 297 -15 2857 153 59 41 chrX 32405360 32405493 -130194437 + L1MA9 LINE L1 5978 6107 -205 852 112 0 9 chrX 32405500 32405616 -130194314 + FLAM_C SINE Alu 9 123 -20 1207 119 5 5 chrX 32405616 32405826 -130194104 + L1MA9 LINE L1 6092 6301 -11 303 299 51 51 chrX 32406188 32406345 -130193585 + MIR3 SINE MIR 34 190 -18 297 0 0 0 chrX 32406510 32406543 -130193387 + (CA)n Simple_repeat Simple_repeat 1 33 0 3209 218 23 38 chrX 32406831 32407115 -130192815 + L1ME1 LINE L1 45 332 -6064 1558 102 27 4 chrX 32407115 32407340 -130192590 + MER30 DNA MER1_type 1 230 0 3209 218 23 38 chrX 32407340 32407692 -130192238 + L1ME1 LINE L1 332 665 -5731 1695 182 47 3 chrX 32407692 32407989 -130191941 + AluJo SINE Alu 1 310 -2 3209 218 23 38 chrX 32407989 32408266 -130191664 + L1ME1 LINE L1 665 945 -5451 965 206 0 0 chrX 32408298 32408468 -130191462 - FAM SINE Alu -5 170 1 4263 235 43 33 chrX 32408469 32409351 -130190579 + L1ME1 LINE L1 1311 2182 -4033 877 206 12 24 chrX 32409351 32409521 -130190409 + FAM SINE Alu 1 168 -7 4263 235 43 33 chrX 32409521 32410066 -130189864 + L1ME1 LINE L1 2182 2720 -3495 1795 142 3 48 chrX 32410066 32410376 -130189554 - AluJb SINE Alu -16 296 1 4263 235 43 33 chrX 32410376 32411065 -130188865 + L1ME1 LINE L1 2720 3413 -2802 1632 132 18 0 chrX 32411065 32411285 -130188645 - AluSx SINE Alu -26 286 63 4263 235 43 33 chrX 32411285 32411765 -130188165 + L1ME1 LINE L1 3413 3887 -2328 563 223 14 0 chrX 32411764 32411903 -130188027 + L1ME1 LINE L1 4168 4308 -1907 * 3063 211 61 20 chrX 32411936 32412295 -130187635 + L1ME1 LINE L1 4408 4751 -1484 2329 64 3 10 chrX 32412295 32412608 -130187322 + L1PA8 LINE L1 5860 6170 -2 3063 211 61 20 chrX 32412608 32413921 -130186009 + L1ME1 LINE L1 4751 6219 -16 902 174 11 22 chrX 32413930 32414114 -130185816 + L1MB7 LINE L1 5620 5801 -383 1688 139 21 0 chrX 32414114 32414402 -130185528 + MER47A DNA MER2_type 1 294 -72 6709 35 4 0 chrX 32414403 32415243 -130184687 - L1PA5 LINE L1 -5 6149 5307 1817 130 58 20 chrX 32415243 32415556 -130184374 - AluSx SINE Alu 0 312 1 416 232 0 0 chrX 32415556 32415638 -130184292 + MER47A DNA MER2_type 285 366 0 1612 169 57 30 chrX 32415638 32416005 -130183925 + L1MB7 LINE L1 5800 6176 -8 408 201 69 42 chrX 32416371 32416515 -130183415 - L1ME3A LINE L1 -5 6165 6018 2554 157 37 2 chrX 32416544 32417009 -130182921 - L1MB2 LINE L1 -8 6163 5683 724 228 92 48 chrX 32417030 32417280 -130182650 - MIR SINE MIR 0 262 2 246 287 327 0 chrX 32418891 32418992 -130180938 - L2 LINE L2 -5 3267 3134 239 143 0 0 chrX 32419181 32419223 -130180707 + AluSq SINE Alu 1 42 -257 5410 107 2 14 chrX 32419223 32420012 -130179918 - LTR17 LTR ERV1 0 780 1 1729 80 57 42 chrX 32420012 32420275 -130179655 + AluSq SINE Alu 39 305 -8 517 334 98 41 chrX 32420532 32420985 -130178945 - L2 LINE L2 -607 2707 2208 1627 95 0 5 chrX 32420985 32421195 -130178735 - AluSg/x SINE Alu -18 292 84 517 334 98 41 chrX 32421195 32421355 -130178575 - L2 LINE L2 -1106 2208 2059 190 301 131 78 chrX 32421433 32421768 -130178162 - L2 LINE L2 -2 3270 2918 613 294 82 45 chrX 32422436 32422861 -130177069 + L1MC/D LINE L1 5280 5720 -2088 2221 99 0 0 chrX 32423433 32423757 -130176173 + AluSx SINE Alu 1 324 0 803 125 0 9 chrX 32423772 32423884 -130176046 + FLAM_A SINE Alu 8 118 -24 2351 81 7 0 chrX 32424261 32424556 -130175374 + AluSp SINE Alu 2 298 -15 3172 27 3 0 chrX 32424671 32425046 -130174884 + L1PA4 LINE L1 5779 6154 -1 383 320 80 20 chrX 32425374 32425574 -130174356 + L2 LINE L2 2874 3085 -187 473 133 152 9 chrX 32426031 32426136 -130173794 + MER61A LTR ERV1 1 120 -223 463 81 0 54 chrX 32426135 32426209 -130173721 + MER61A LTR ERV1 274 343 0 * 2763 174 73 24 chrX 32426209 32426876 -130173054 + MER61A-int LTR ERV1 1 700 -4517 18146 99 19 16 chrX 32426916 32427488 -130172442 + MER61A-int LTR ERV1 1320 1889 -3328 2450 77 0 0 chrX 32427488 32427786 -130172144 - AluSg SINE Alu -12 298 1 18146 99 19 16 chrX 32427786 32430867 -130169063 + MER61A-int LTR ERV1 1889 5216 -1 1226 160 167 23 chrX 32430867 32431167 -130168763 + MER61A LTR ERV1 1 343 0 359 219 0 42 chrX 32431629 32431725 -130168205 + HsTC2 DNA Tc2 1 92 -1806 241 261 0 0 chrX 32431743 32431812 -130168118 + HsTC2 DNA Tc2 1723 1791 -107 1163 268 132 21 chrX 32432011 32432488 -130167442 + L1MC4a LINE L1 5320 5849 -1959 34 0 0 0 chrX 32432642 32432676 -130167254 + AT_rich Low_complexity Low_complexity 1 34 0 644 339 49 37 chrX 32433760 32434389 -130165541 + L1MEd LINE L1 12 648 -5471 256 217 72 24 chrX 32434410 32434493 -130165437 + MLT1H1 LTR MaLR 9 95 -495 801 257 135 52 chrX 32434548 32434991 -130164939 + MLT1H1 LTR MaLR 76 555 0 1301 225 89 66 chrX 32435139 32435612 -130164318 + L1MC4a LINE L1 5455 5945 -1863 2065 145 3 0 chrX 32435612 32435922 -130164008 + AluSx SINE Alu 1 311 -1 1301 225 89 66 chrX 32435922 32436012 -130163918 + L1MC4a LINE L1 5945 6031 -1777 613 254 124 28 chrX 32436132 32436513 -130163417 + L1MEd LINE L1 917 1236 -4886 377 268 148 78 chrX 32436513 32436926 -130163004 + HAL1b LINE L1 391 830 -518 2614 42 0 3 chrX 32437034 32437345 -130162585 + AluY SINE Alu 1 310 -1 206 351 0 0 chrX 32437406 32437520 -130162410 + A-rich Low_complexity Low_complexity 1 114 0 481 334 51 10 chrX 32437600 32438109 -130161821 + L1MEd LINE L1 2218 2747 -3382 1043 167 0 0 chrX 32438312 32438468 -130161462 - FRAM SINE Alu -16 160 5 389 333 57 29 chrX 32439580 32439826 -130160104 - MIR SINE MIR 0 262 10 184 409 88 7 chrX 32440102 32440239 -130159691 - L2 LINE L2 -9 3263 3116 186 43 0 0 chrX 32440640 32440663 -130159267 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chrX 32440792 32440827 -130159103 + AT_rich Low_complexity Low_complexity 1 35 0 492 106 0 0 chrX 32441045 32441130 -130158800 + L1MA7 LINE L1 6205 6289 -2 875 141 11 45 chrX 32441238 32441415 -130158515 - L1PA15 LINE L1 -3 6162 5992 216 200 0 0 chrX 32441425 32441470 -130158460 + T-rich Low_complexity Low_complexity 1 45 0 * 362 73 0 18 chrX 32441469 32441524 -130158406 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1677 189 30 3 chrX 32441526 32441828 -130158102 - AluSx SINE Alu -2 310 1 5229 145 3 3 chrX 32441829 32443355 -130156575 - L1PA15 LINE L1 -126 6039 4513 3700 191 21 0 chrX 32443352 32444101 -130155829 + L1P LINE L1 3492 4256 -1890 * 704 142 0 8 chrX 32444101 32444221 -130155709 - MLT1A1 LTR MaLR -246 119 1 3683 113 31 17 chrX 32444479 32445057 -130154873 + L1PA16 LINE L1 5572 6157 -9 1765 170 3 7 chrX 32445158 32445452 -130154478 + AluJo SINE Alu 5 297 -15 1200 76 0 199 chrX 32445476 32445595 -130154335 - MLT2A1 LTR ERVL 0 444 415 2318 63 3 0 chrX 32445595 32445879 -130154051 - AluY SINE Alu -26 285 1 1200 76 0 199 chrX 32445879 32446050 -130153880 - MLT2A1 LTR ERVL -29 415 212 8334 50 12 0 chrX 32446050 32447116 -130152814 - HERVL LTR ERVL -1562 4092 3014 247 176 0 20 chrX 32448290 32448341 -130151589 + MLT1J2 LTR MaLR 77 126 -324 * 1068 234 89 23 chrX 32448308 32448702 -130151228 + MLT1L LTR MaLR 196 615 0 756 250 60 8 chrX 32450774 32451022 -130148908 - LTR33A LTR ERVL -27 496 236 1500 218 65 79 chrX 32451053 32451548 -130148382 - MLT1F1 LTR MaLR -5 562 75 750 170 33 71 chrX 32451597 32451690 -130148240 - MER69A DNA AcHobo -2351 175 91 1875 192 40 14 chrX 32451690 32452111 -130147819 + L1MB8 LINE L1 5747 6178 0 750 170 33 71 chrX 32452111 32452199 -130147731 - MER69A DNA AcHobo -2435 91 1 499 249 142 10 chrX 32452201 32452398 -130147532 - LTR33A LTR ERVL -292 231 9 2004 242 61 54 chrX 32452796 32453684 -130146246 + MER97a DNA MER1_type? 1 894 0 359 259 0 0 chrX 32453710 32453795 -130146135 - MIR SINE MIR -126 136 52 627 238 65 12 chrX 32453826 32453994 -130145936 - MIR SINE MIR -54 208 32 738 196 31 57 chrX 32455414 32455608 -130144322 + MER5A DNA MER1_type 1 189 0 314 331 94 36 chrX 32455880 32456209 -130143721 + L2 LINE L2 2127 2474 -840 326 346 79 12 chrX 32457204 32457458 -130142472 - LTR16C LTR ERVL -220 271 1 236 345 17 0 chrX 32457614 32457733 -130142197 + L2 LINE L2 2934 3054 -218 186 273 36 0 chrX 32458141 32458196 -130141734 - L3b LINE CR1 -336 1247 1191 3000 75 0 0 chrX 32458828 32459203 -130140727 + THE1C LTR MaLR 1 375 0 343 246 42 34 chrX 32459286 32459404 -130140526 - MER5A DNA MER1_type 0 189 71 316 161 25 0 chrX 32459476 32459557 -130140373 + (TA)n Simple_repeat Simple_repeat 1 83 0 234 62 0 0 chrX 32459632 32459664 -130140266 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 108 0 0 chrX 32459721 32459758 -130140172 + (TG)n Simple_repeat Simple_repeat 2 38 0 552 180 107 0 chrX 32459768 32459890 -130140040 - LTR16C LTR ERVL -3 488 354 276 345 77 30 chrX 32459952 32460120 -130139810 - LTR16C LTR ERVL -315 176 1 2506 54 0 0 chrX 32461751 32462048 -130137882 + AluY SINE Alu 3 299 -12 198 167 0 0 chrX 32462550 32462586 -130137344 + GA-rich Low_complexity Low_complexity 3 38 0 1996 66 4 0 chrX 32462612 32462924 -130137006 + AluSx SINE Alu 39 351 0 26 74 0 0 chrX 32463666 32463720 -130136210 + AT_rich Low_complexity Low_complexity 1 54 0 207 224 17 0 chrX 32463817 32463875 -130136055 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 1151 142 0 0 chrX 32464007 32464169 -130135761 + FRAM SINE Alu 2 163 -13 25 0 0 0 chrX 32464581 32464606 -130135324 + AT_rich Low_complexity Low_complexity 1 25 0 2151 31 0 4 chrX 32464804 32465094 -130134836 - L1PA3 LINE L1 0 6155 5902 1769 140 0 7 chrX 32465096 32465374 -130134556 + AluSx SINE Alu 1 276 -36 1561 112 31 0 chrX 32465650 32465873 -130134057 + MER30 DNA MER1_type 1 230 0 324 0 0 0 chrX 32466176 32466212 -130133718 + (CA)n Simple_repeat Simple_repeat 2 37 0 460 233 106 42 chrX 32466599 32466788 -130133142 - L1ME3A LINE L1 -8 6162 5962 833 207 47 77 chrX 32466847 32467015 -130132915 - L1ME3A LINE L1 -213 5957 5800 1500 93 75 0 chrX 32467015 32467229 -130132701 - MER30 DNA MER1_type 0 230 1 833 207 47 77 chrX 32467229 32467360 -130132570 - L1ME3A LINE L1 -370 5800 5667 23 0 0 0 chrX 32468832 32468855 -130131075 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chrX 32469684 32469727 -130130203 + AT_rich Low_complexity Low_complexity 1 43 0 2156 119 0 0 chrX 32469944 32470238 -130129692 - AluSx SINE Alu -18 294 1 1816 162 0 7 chrX 32471713 32472019 -130127911 - AluJo SINE Alu 0 304 1 229 180 82 0 chrX 32472263 32472324 -130127606 - L1MA10 LINE L1 0 6334 6269 1887 157 0 7 chrX 32472656 32472949 -130126981 - AluJb SINE Alu -21 291 1 262 307 87 46 chrX 32473392 32473610 -130126320 - L2 LINE L2 -387 2927 2701 555 242 108 57 chrX 32473627 32474016 -130125914 + L1MC4a LINE L1 5722 6130 -1678 21 0 0 0 chrX 32474036 32474057 -130125873 + AT_rich Low_complexity Low_complexity 1 21 0 897 244 19 14 chrX 32475195 32475404 -130124526 + MIR SINE MIR 49 258 -4 396 303 28 61 chrX 32475458 32475514 -130124416 - L1MD2 LINE L1 -245 6114 6059 3551 148 29 72 chrX 32475514 32476349 -130123581 - L1MA8 LINE L1 -210 6081 5283 * 6478 172 24 15 chrX 32476347 32477707 -130122223 + L1MA8 LINE L1 3938 5308 -838 218 316 58 47 chrX 32477808 32477979 -130121951 - L2 LINE L2 -408 2906 2734 3261 187 45 80 chrX 32478792 32479621 -130120309 - L1ME2 LINE L1 -13 6151 5339 1485 167 22 13 chrX 32479621 32479938 -130119992 - L1MA8 LINE L1 -6 6285 5966 3261 187 45 80 chrX 32479938 32480063 -130119867 - L1ME2 LINE L1 -825 5339 5211 191 268 56 14 chrX 32480087 32480158 -130119772 - L3b LINE CR1 -246 1337 1264 881 200 5 64 chrX 32480352 32480572 -130119358 + MER3 DNA MER1_type 1 207 -2 304 304 14 22 chrX 32480668 32480966 -130118964 + L1MC4a LINE L1 4726 5019 -1127 228 128 106 0 chrX 32481234 32481281 -130118649 + MLT-int LTR MaLR 1444 1495 -240 5813 103 36 23 chrX 32481281 32481753 -130118177 - Tigger3b DNA MER2_type -1797 1231 766 2227 102 3 0 chrX 32481753 32482038 -130117892 + AluSp SINE Alu 1 309 0 208 0 0 0 chrX 32482038 32482061 -130117869 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5813 103 36 23 chrX 32482061 32482795 -130117135 - Tigger3b DNA MER2_type -2262 766 1 651 156 97 159 chrX 32482795 32483052 -130116878 + MLT1C-int LTR MaLR 1131 1371 0 1355 223 39 68 chrX 32483052 32483243 -130116687 + MLT1C LTR MaLR 1 196 -271 1655 153 40 7 chrX 32483243 32483518 -130116412 + AluJb SINE Alu 1 284 -28 1355 223 39 68 chrX 32483518 32483783 -130116147 + MLT1C LTR MaLR 196 444 -23 469 317 68 28 chrX 32484201 32484816 -130115114 + L1MC4a LINE L1 5255 5894 -1914 465 226 139 0 chrX 32484901 32485038 -130114892 + MLT1H LTR MaLR 7 162 -387 319 208 25 67 chrX 32485246 32485366 -130114564 + MLT1C LTR MaLR 434 548 -1 1587 202 26 45 chrX 32485662 32486082 -130113848 + MLT1C LTR MaLR 54 465 -2 352 250 111 44 chrX 32486103 32486283 -130113647 - MLT1J LTR MaLR -3 508 317 247 304 8 48 chrX 32486483 32486608 -130113322 - L2 LINE L2 -737 2577 2458 968 97 0 159 chrX 32486825 32487052 -130112878 + L1MC1 LINE L1 6128 6318 -15 1863 174 0 13 chrX 32487061 32487372 -130112558 + AluJb SINE Alu 1 307 -5 22 35 0 0 chrX 32487481 32487510 -130112420 + AT_rich Low_complexity Low_complexity 1 29 0 899 272 82 37 chrX 32487616 32488205 -130111725 + HAL1b LINE L1 55 669 -679 2034 121 0 3 chrX 32488216 32488525 -130111405 + AluSx SINE Alu 1 308 0 409 341 63 20 chrX 32488568 32488823 -130111107 + L1 LINE L1 2257 2522 -3624 1633 201 40 40 chrX 32488992 32489366 -130110564 + MLT1A2 LTR MaLR 1 374 0 500 193 22 44 chrX 32489588 32489723 -130110207 - MER104 DNA Tc2 -6 174 43 426 289 105 46 chrX 32490004 32490425 -130109505 + L1 LINE L1 2978 3430 -2716 2227 82 4 0 chrX 32490425 32490704 -130109226 + AluSp SINE Alu 3 282 -31 426 289 105 46 chrX 32490704 32490752 -130109178 + L1 LINE L1 3430 3474 -2672 1107 247 215 22 chrX 32490771 32491350 -130108580 - LTR50 LTR ERVL -19 682 64 235 355 11 11 chrX 32491529 32491712 -130108218 + L1 LINE L1 3753 3935 -2211 731 284 126 33 chrX 32491794 32492128 -130107802 - L2 LINE L2 0 3313 2949 1327 334 68 17 chrX 32492162 32492917 -130107013 - L2 LINE L2 -801 2513 1721 1840 248 166 8 chrX 32493019 32493671 -130106259 + L2 LINE L2 2272 3006 -307 756 150 0 29 chrX 32493867 32494040 -130105890 + GA-rich Low_complexity Low_complexity 3 170 0 192 284 45 0 chrX 32494314 32494381 -130105549 - MIR SINE MIR -128 134 65 24 32 0 0 chrX 32494618 32494649 -130105281 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chrX 32495227 32495253 -130104677 + AT_rich Low_complexity Low_complexity 1 26 0 525 151 32 56 chrX 32496567 32496693 -130103237 - L1ME3A LINE L1 -10 6160 6038 1482 269 146 30 chrX 32496697 32497570 -130102360 - HAL1b LINE L1 -225 1123 352 492 18 0 0 chrX 32497570 32497627 -130102303 + (TG)n Simple_repeat Simple_repeat 2 58 0 2273 94 0 10 chrX 32497627 32497915 -130102015 - AluSx SINE Alu -27 285 1 1482 269 146 30 chrX 32497915 32497968 -130101962 - HAL1b LINE L1 -995 353 89 1389 272 68 14 chrX 32499203 32499630 -130100300 + L3 LINE CR1 434 883 -694 205 263 35 18 chrX 32499716 32499773 -130100157 + MIR SINE MIR 16 73 -135 412 280 138 37 chrX 32499995 32500213 -130099717 + L3 LINE CR1 1115 1354 -223 249 254 42 0 chrX 32500217 32500288 -130099642 + L3 LINE CR1 1469 1542 -35 2486 56 0 3 chrX 32500671 32500975 -130098955 + AluSc SINE Alu 1 303 -6 187 231 26 0 chrX 32502341 32502380 -130097550 - MIR SINE MIR -117 145 106 2375 68 3 0 chrX 32502847 32503142 -130096788 - AluSg SINE Alu -14 296 1 225 65 0 0 chrX 32504122 32504153 -130095777 + (CCCTG)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chrX 32504196 32504219 -130095711 + GC_rich Low_complexity Low_complexity 1 23 0 211 204 0 20 chrX 32506255 32506304 -130093626 + C-rich Low_complexity Low_complexity 3 50 0 397 228 203 13 chrX 32507648 32507806 -130092124 + MIR SINE MIR 25 212 -50 32 0 0 0 chrX 32508892 32508924 -130091006 + AT_rich Low_complexity Low_complexity 1 32 0 272 120 20 0 chrX 32509937 32509987 -130089943 + CT-rich Low_complexity Low_complexity 1 51 0 28 48 0 0 chrX 32510380 32510422 -130089508 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrX 32510443 32510464 -130089466 + AT_rich Low_complexity Low_complexity 1 21 0 1176 293 92 5 chrX 32510639 32511032 -130088898 + MER115 DNA AcHobo 32 458 -235 242 118 0 59 chrX 32512933 32512984 -130086946 - MER116 DNA Mariner 0 80 33 1903 211 132 30 chrX 32513252 32513792 -130086138 + MLT1G1 LTR MaLR 1 595 0 2228 140 39 83 chrX 32514032 32514552 -130085378 + MLT1D LTR MaLR 3 499 -6 343 247 96 7 chrX 32514977 32515123 -130084807 - L1ME2 LINE L1 0 6164 6006 255 103 0 0 chrX 32515123 32515162 -130084768 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2421 88 3 0 chrX 32515169 32515476 -130084454 - AluSg SINE Alu -2 308 1 2068 106 0 20 chrX 32515481 32515773 -130084157 - AluSx SINE Alu 0 312 27 1951 206 33 43 chrX 32515789 32516229 -130083701 - L1ME2 LINE L1 -143 6021 5585 2562 111 23 10 chrX 32516229 32516625 -130083305 - MER57A LTR ERV1 -2 401 1 1951 206 33 43 chrX 32516625 32516695 -130083235 - L1ME2 LINE L1 -579 5585 5516 185 150 0 25 chrX 32517405 32517445 -130082485 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 534 304 38 87 chrX 32517639 32518008 -130081922 - L2 LINE L2 -5 3267 2917 1956 201 87 49 chrX 32518064 32518671 -130081259 + L1MC4 LINE L1 7413 8042 0 487 321 63 39 chrX 32518736 32519069 -130080861 - L2 LINE L2 -631 2683 2343 1588 255 173 10 chrX 32519072 32519593 -130080337 + L2 LINE L2 2372 2977 -337 560 283 31 95 chrX 32519601 32520117 -130079813 - MLT1J LTR MaLR -28 483 1 22 0 0 0 chrX 32520694 32520716 -130079214 + AT_rich Low_complexity Low_complexity 1 22 0 2250 82 0 0 chrX 32522241 32522520 -130077410 + AluY SINE Alu 1 279 -32 255 20 0 78 chrX 32522520 32522571 -130077359 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 238 227 0 0 chrX 32523719 32523763 -130076167 - MIR3 SINE MIR -11 197 154 239 369 0 0 chrX 32523774 32523839 -130076091 - MIR SINE MIR -124 84 20 1635 216 73 38 chrX 32524780 32525233 -130074697 + L1ME2 LINE L1 5597 6089 -89 870 195 158 5 chrX 32525233 32525423 -130074507 - MER20 DNA MER1_type 0 219 1 1635 216 73 38 chrX 32525423 32525516 -130074414 + L1ME2 LINE L1 6089 6177 -1 2614 128 0 12 chrX 32525547 32525977 -130073953 + L1MC3 LINE L1 7202 7626 -159 198 0 0 0 chrX 32526020 32526042 -130073888 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7117 54 0 0 chrX 32526042 32527555 -130072375 - L1PA6 LINE L1 -18 6136 4624 677 131 9 9 chrX 32527556 32527663 -130072267 + FLAM_C SINE Alu 27 133 -10 645 174 36 0 chrX 32527665 32527803 -130072127 + L1MC3 LINE L1 7617 7759 -26 540 181 9 0 chrX 32528165 32528281 -130071649 + L1MA6 LINE L1 3345 3461 -2685 * 6817 145 31 26 chrX 32528275 32529332 -130070598 + L1MA6 LINE L1 3980 5030 -1270 2049 166 0 0 chrX 32529332 32529639 -130070291 + AluSx SINE Alu 3 309 -3 6817 145 31 26 chrX 32529639 32530194 -130069736 + L1MA6 LINE L1 5030 5581 -719 2374 94 0 0 chrX 32530194 32530493 -130069437 + AluSx SINE Alu 2 300 -12 6817 145 31 26 chrX 32530493 32531059 -130068871 + L1MA6 LINE L1 5581 6157 -143 1790 169 0 44 chrX 32531104 32531423 -130068507 - AluSx SINE Alu -7 305 1 1051 76 63 0 chrX 32531424 32531582 -130068348 + L1MA6 LINE L1 6133 6300 0 359 352 16 32 chrX 32531782 32531907 -130068023 - L2 LINE L2 -8 3264 3142 252 262 156 33 chrX 32532321 32532443 -130067487 + MIR SINE MIR 92 228 -34 370 311 5 20 chrX 32532554 32532744 -130067186 + MIR SINE MIR 3 247 -15 426 288 58 0 chrX 32532766 32532905 -130067025 + L2 LINE L2 3167 3313 0 634 255 81 23 chrX 32533083 32533342 -130066588 + MLT1G LTR MaLR 15 288 -302 2538 211 37 37 chrX 32533631 32534170 -130065760 + MLT1F LTR MaLR 4 542 0 284 327 122 38 chrX 32534960 32535223 -130064707 + L3b LINE CR1 1291 1575 -8 356 306 29 12 chrX 32536571 32536744 -130063186 - L1ME4a LINE L1 0 6121 5946 419 299 143 26 chrX 32536838 32537069 -130062861 + MIR SINE MIR 5 262 0 454 271 233 23 chrX 32537080 32537423 -130062507 - L1ME4a LINE L1 -366 5755 5341 187 320 10 70 chrX 32537425 32537525 -130062405 - L2 LINE L2 -3 3269 3176 1558 148 7 69 chrX 32538336 32538641 -130061289 - AluJo SINE Alu -26 286 1 859 233 175 53 chrX 32538757 32539174 -130060756 - MER110A LTR ERV1 0 468 1 397 273 55 0 chrX 32539195 32539305 -130060625 - MIR SINE MIR -65 143 28 190 214 24 0 chrX 32540045 32540087 -130059843 + L2 LINE L2 3271 3313 0 828 312 80 56 chrX 32541235 32541838 -130058092 + L3 LINE CR1 359 975 -602 197 235 52 87 chrX 32542588 32542703 -130057227 + L2 LINE L2 2262 2372 -942 493 323 143 31 chrX 32543008 32543302 -130056628 + L3 LINE CR1 1246 1572 -5 253 214 122 41 chrX 32543351 32543449 -130056481 + L1ME4a LINE L1 6012 6117 -4 1165 254 46 60 chrX 32543577 32544047 -130055883 - MLT1J LTR MaLR -7 504 1 524 232 53 13 chrX 32544179 32544330 -130055600 + MIR SINE MIR 106 262 0 315 0 0 0 chrX 32544529 32544564 -130055366 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chrX 32544563 32544591 -130055339 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 4607 138 37 90 chrX 32548254 32549266 -130050664 + L1MC3 LINE L1 6828 7785 0 2260 90 3 3 chrX 32550375 32550674 -130049256 + AluSp SINE Alu 1 299 -14 413 190 0 0 chrX 32551608 32551687 -130048243 + MIR SINE MIR 183 261 -1 3534 79 2 5 chrX 32551698 32552142 -130047788 - L1PA10 LINE L1 -2 6166 5724 780 267 58 12 chrX 32552336 32552576 -130047354 + LTR16C LTR ERVL 182 432 -59 28 48 0 0 chrX 32553856 32553898 -130046032 + AT_rich Low_complexity Low_complexity 1 42 0 861 128 0 43 chrX 32554287 32554428 -130045502 - AluJb SINE Alu -177 135 1 1756 164 10 3 chrX 32554469 32554761 -130045169 + AluJb SINE Alu 1 294 -18 2311 186 40 12 chrX 32554917 32555411 -130044519 - Charlie4a DNA MER1_type 0 508 1 576 341 72 0 chrX 32556232 32556455 -130043475 + MIR SINE MIR 9 247 -15 2273 90 7 10 chrX 32556464 32556765 -130043165 + AluSq SINE Alu 1 300 -13 180 125 0 0 chrX 32557080 32557112 -130042818 + (CA)n Simple_repeat Simple_repeat 1 32 0 592 323 80 32 chrX 32558096 32558641 -130041289 + L2 LINE L2 2644 3205 -108 303 194 28 28 chrX 32558641 32558713 -130041217 - LTR16C LTR ERVL 0 491 420 261 204 43 54 chrX 32558747 32558840 -130041090 - MLT2E LTR ERVL -54 574 483 321 339 26 0 chrX 32559074 32559189 -130040741 + L2 LINE L2 3194 3311 -2 495 193 0 0 chrX 32560155 32560243 -130039687 - L2 LINE L2 -1 3312 3225 2195 185 69 41 chrX 32560255 32560763 -130039167 + L1ME1 LINE L1 5640 6161 -5 558 239 38 92 chrX 32561102 32561341 -130038589 + LTR16C LTR ERVL 266 491 0 6271 278 89 22 chrX 32561408 32562323 -130037607 - L2 LINE L2 -248 3065 2213 2056 144 52 35 chrX 32562323 32562691 -130037239 + THE1C LTR MaLR 2 375 0 6271 278 89 22 chrX 32562691 32564125 -130035805 - L2 LINE L2 -1100 2213 572 295 269 67 45 chrX 32564648 32564782 -130035148 + MER5B DNA MER1_type 42 178 0 2165 122 16 3 chrX 32564888 32565191 -130034739 + AluSx SINE Alu 1 307 -5 253 111 0 0 chrX 32565337 32565373 -130034557 + MER5A DNA MER1_type 154 189 0 226 271 43 0 chrX 32566539 32566609 -130033321 + CT-rich Low_complexity Low_complexity 1 73 0 668 175 137 0 chrX 32566752 32566911 -130033019 + MER5A DNA MER1_type 4 187 -2 3155 161 68 4 chrX 32566914 32567461 -130032469 - MER6A DNA MER2_type 0 605 24 923 140 0 0 chrX 32567476 32567612 -130032318 - AluJb SINE Alu -18 294 159 373 143 16 16 chrX 32567613 32567676 -130032254 - AluJb SINE Alu -115 187 125 306 164 0 0 chrX 32567699 32567754 -130032176 + (TG)n Simple_repeat Simple_repeat 2 56 0 950 112 0 0 chrX 32567781 32567906 -130032024 - AluJb SINE Alu -187 125 1 251 296 25 0 chrX 32568010 32568091 -130031839 + MER115 DNA AcHobo 151 233 -460 213 39 0 0 chrX 32568284 32568310 -130031620 + (TC)n Simple_repeat Simple_repeat 2 27 0 1023 227 8 21 chrX 32568310 32568548 -130031382 + MER115 DNA AcHobo 459 693 0 235 286 193 21 chrX 32568685 32568825 -130031105 - L3b LINE CR1 -318 1265 1102 369 319 53 0 chrX 32568921 32569034 -130030896 - MER5A DNA MER1_type -64 125 7 180 405 0 0 chrX 32569174 32569253 -130030677 - L2 LINE L2 -8 3264 3186 255 31 0 0 chrX 32571081 32571113 -130028817 + (CA)n Simple_repeat Simple_repeat 1 32 0 323 304 20 20 chrX 32571113 32571215 -130028715 - L3 LINE CR1 -66 1511 1410 225 185 93 19 chrX 32571798 32571852 -130028078 - MLT1K LTR MaLR -2 586 529 308 229 38 99 chrX 32571929 32572060 -130027870 - MLT1K LTR MaLR -92 496 374 832 229 30 45 chrX 32572664 32572865 -130027065 - MIR SINE MIR -37 225 28 562 295 20 10 chrX 32573099 32573320 -130026610 + MIR3 SINE MIR 1 219 -43 380 271 93 55 chrX 32573470 32573720 -130026210 - L1ME4a LINE L1 -24 6097 5858 457 300 83 21 chrX 32573720 32573960 -130025970 + MER112 DNA MER1_type 1 255 -1 380 271 93 55 chrX 32573960 32574075 -130025855 - L1ME4a LINE L1 -263 5858 1269 701 309 55 66 chrX 32574088 32574600 -130025330 - L2 LINE L2 0 3313 2808 2231 103 109 3 chrX 32574906 32575235 -130024695 - L1PB3 LINE L1 -8 6146 5783 357 164 0 0 chrX 32575236 32575309 -130024621 + (TA)n Simple_repeat Simple_repeat 1 73 0 4454 166 27 22 chrX 32575322 32575798 -130024132 - L1PB3 LINE L1 -363 5791 5319 2545 60 0 0 chrX 32575798 32576098 -130023832 - AluY SINE Alu -11 300 1 4454 166 27 22 chrX 32576098 32577099 -130022831 - L1PB3 LINE L1 -835 5319 4289 309 286 0 48 chrX 32577118 32577202 -130022728 + L2 LINE L2 3234 3313 0 2626 243 41 11 chrX 32578129 32578770 -130021160 - L1ME3A LINE L1 0 6170 5511 885 254 28 14 chrX 32579199 32579416 -130020514 + MIR SINE MIR 42 261 -1 930 200 71 31 chrX 32579498 32579723 -130020207 + L1ME LINE L1 5538 5771 -399 1397 243 72 13 chrX 32579726 32580113 -130019817 - LTR16A1 LTR ERVL -44 413 4 212 306 0 61 chrX 32581054 32581152 -130018778 - L2 LINE L2 0 3313 3222 527 179 0 0 chrX 32581472 32581550 -130018380 + Tigger3(Golem) DNA MER2_type 2 79 -2950 757 160 8 0 chrX 32581558 32581677 -130018253 + Tigger3(Golem) DNA MER2_type 2910 3029 0 215 318 16 0 chrX 32582177 32582240 -130017690 + (CAG)n Simple_repeat Simple_repeat 1 64 0 190 329 13 0 chrX 32582247 32582323 -130017607 - MIR SINE MIR -30 232 156 300 246 15 0 chrX 32582323 32582388 -130017542 - MER2 DNA MER2_type 0 345 280 457 183 0 0 chrX 32582454 32582525 -130017405 + FLAM_C SINE Alu 37 107 -36 1053 129 117 0 chrX 32582525 32582688 -130017242 - MER2 DNA MER2_type -163 182 1 279 319 21 21 chrX 32582708 32582802 -130017128 - MIR SINE MIR -150 112 19 467 241 173 0 chrX 32582856 32583018 -130016912 + MIR SINE MIR 67 256 -6 1272 88 26 31 chrX 32583712 32583906 -130016024 - L1PA13 LINE L1 0 6163 5971 1597 223 67 18 chrX 32583906 32584399 -130015531 - L1M4 LINE L1 -2938 3208 2692 23 0 0 0 chrX 32584399 32584422 -130015508 + AT_rich Low_complexity Low_complexity 1 23 0 1007 201 31 38 chrX 32584750 32584887 -130015043 - L1M4 LINE L1 -3609 2537 2401 1908 140 21 7 chrX 32584887 32585173 -130014757 - AluJo SINE Alu -21 291 2 1007 201 31 38 chrX 32585173 32585324 -130014606 - L1M4 LINE L1 -3745 2401 2251 362 253 74 0 chrX 32585791 32585886 -130014044 + MIR SINE MIR 88 189 -73 212 259 74 0 chrX 32587023 32587077 -130012853 + MER5A DNA MER1_type 64 121 -68 30 0 0 0 chrX 32587719 32587749 -130012181 + AT_rich Low_complexity Low_complexity 1 30 0 7121 61 11 2 chrX 32589124 32590239 -130009691 + L1PA8A LINE L1 5006 6128 -3 296 258 121 16 chrX 32590294 32590418 -130009512 + L2 LINE L2 3177 3313 0 189 269 58 0 chrX 32590471 32590523 -130009407 + MIR SINE MIR 118 172 -90 1478 252 51 22 chrX 32590560 32590969 -130008961 + LTR16A LTR ERVL 21 441 -9 632 208 44 128 chrX 32591170 32591327 -130008603 + MIR SINE MIR 2 136 -126 2017 142 13 3 chrX 32591327 32591636 -130008294 + AluSx SINE Alu 1 312 0 632 208 44 128 chrX 32591636 32591704 -130008226 + MIR SINE MIR 136 208 -54 534 302 131 37 chrX 32591905 32592233 -130007697 + LTR16A LTR ERVL 92 450 0 2598 40 0 0 chrX 32592803 32593100 -130006830 - AluY SINE Alu -14 297 1 1773 171 0 0 chrX 32594524 32594804 -130005126 - AluJb SINE Alu -32 280 1 365 306 65 8 chrX 32594806 32594930 -130005000 - L2 LINE L2 0 3272 3142 791 180 170 5 chrX 32594983 32595177 -130004753 - MIR SINE MIR -21 241 16 251 72 24 108 chrX 32595352 32595435 -130004495 + (GA)n Simple_repeat Simple_repeat 1 76 0 613 203 0 8 chrX 32595582 32595700 -130004230 + MER103 DNA DNA 3 119 -47 218 196 36 18 chrX 32596169 32596225 -130003705 + CT-rich Low_complexity Low_complexity 2 58 0 588 310 88 5 chrX 32596646 32596862 -130003068 + MIR SINE MIR 27 260 -2 281 256 0 35 chrX 32597302 32597388 -130002542 + LTR67 LTR ERVL 460 542 -15 2950 9 0 0 chrX 32597939 32598256 -130001674 + AluYb8 SINE Alu 1 317 -1 263 303 13 13 chrX 32599273 32599349 -130000581 + MIR3 SINE MIR 117 192 -16 402 264 71 13 chrX 32599773 32599928 -130000002 + MER103 DNA DNA 1 164 -2 2145 180 25 0 chrX 32600000 32600356 -129999574 + MLT1A1 LTR MaLR 1 365 0 2496 144 48 0 chrX 32600356 32600753 -129999177 + MLT1A1-int LTR MaLR 1 416 -1319 3081 204 34 42 chrX 32600762 32601089 -129998841 + MLT1A1-int LTR MaLR 1044 1372 -363 1798 128 64 4 chrX 32601089 32601370 -129998560 - AluSx SINE Alu -14 298 1 3081 204 34 42 chrX 32601370 32601739 -129998191 + MLT1A1-int LTR MaLR 1372 1735 0 1849 158 128 18 chrX 32601739 32602068 -129997862 + MLT1A1 LTR MaLR 1 365 0 285 98 0 0 chrX 32604326 32604367 -129995563 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 97 0 0 chrX 32604368 32604399 -129995531 + (GA)n Simple_repeat Simple_repeat 2 32 0 219 295 26 26 chrX 32604437 32604515 -129995415 + MIR SINE MIR 117 194 -68 1937 207 42 28 chrX 32604560 32605033 -129994897 - Charlie4a DNA MER1_type 0 508 29 2245 126 0 0 chrX 32605252 32605561 -129994369 - AluSx SINE Alu -3 309 1 879 123 0 39 chrX 32606918 32607048 -129992882 + FLAM_C SINE Alu 1 125 -8 189 299 0 30 chrX 32607490 32607557 -129992373 - MIR SINE MIR -18 244 180 603 272 71 16 chrX 32607640 32607824 -129992106 + MIR SINE MIR 20 213 -49 212 100 25 0 chrX 32607851 32607891 -129992039 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 267 31 0 0 chrX 32608913 32608945 -129990985 + (GA)n Simple_repeat Simple_repeat 1 32 0 12976 24 1 2 chrX 32609553 32611743 -129988187 + L1PA4 LINE L1 3962 6150 -5 307 305 114 48 chrX 32611766 32611950 -129987980 - MIR SINE MIR -63 145 5 305 140 18 0 chrX 32612102 32612159 -129987771 + (TG)n Simple_repeat Simple_repeat 1 58 0 390 320 33 0 chrX 32612260 32612382 -129987548 + MIR SINE MIR 71 196 -66 203 213 0 0 chrX 32613320 32613367 -129986563 + L2 LINE L2 3267 3313 0 407 303 26 32 chrX 32614048 32614203 -129985727 - L2 LINE L2 -369 2945 2792 835 260 198 11 chrX 32614205 32614563 -129985367 - L2 LINE L2 -1100 2214 1790 1482 137 103 0 chrX 32614566 32614799 -129985131 - Tigger3(Golem) DNA MER2_type -2 3027 2771 821 156 0 106 chrX 32614795 32614955 -129984975 - Tigger3(Golem) DNA MER2_type -2886 143 1 * 760 267 136 13 chrX 32614966 32615341 -129984589 - L2 LINE L2 -1537 1777 1357 2180 125 3 0 chrX 32615400 32615703 -129984227 + AluSx SINE Alu 1 304 -8 1107 139 5 27 chrX 32616189 32616376 -129983554 - MER5A DNA MER1_type -1 188 6 231 270 220 0 chrX 32617972 32618072 -129981858 + L2 LINE L2 3151 3272 0 2144 130 0 10 chrX 32618701 32619008 -129980922 - AluSx SINE Alu -8 304 1 180 307 33 78 chrX 32619273 32619426 -129980504 - MIR SINE MIR -10 252 107 380 319 106 65 chrX 32619798 32620090 -129979840 + L3 LINE CR1 1241 1544 -33 1740 237 67 12 chrX 32620696 32621190 -129978740 + L1ME3 LINE L1 5589 6109 -53 383 230 50 60 chrX 32621476 32621576 -129978354 + MIR SINE MIR 45 143 -65 430 171 23 23 chrX 32621595 32621683 -129978247 - L2 LINE L2 0 3313 3226 405 212 136 15 chrX 32622250 32622382 -129977548 - LTR16C LTR ERVL 0 491 344 361 274 23 21 chrX 32622793 32622939 -129976991 + L1MC5 LINE L1 7845 8042 0 199 368 15 0 chrX 32623189 32623257 -129976673 - MIR SINE MIR -119 143 75 197 227 23 0 chrX 32623579 32623623 -129976307 - L2 LINE L2 -13 3259 3215 1310 245 49 83 chrX 32624567 32625074 -129974856 + LTR16C LTR ERVL 1 490 -1 1329 274 62 8 chrX 32625340 32625709 -129974221 + LTR16A LTR ERVL 62 450 0 439 309 120 52 chrX 32625711 32626227 -129973703 + L2 LINE L2 2449 3000 -272 219 225 0 0 chrX 32626227 32626267 -129973663 + (CA)n Simple_repeat Simple_repeat 2 41 0 842 262 66 50 chrX 32626356 32626718 -129973212 - LTR16C LTR ERVL -4 487 120 195 351 53 9 chrX 32627336 32627450 -129972480 - MIR3 SINE MIR -8 200 82 256 242 36 91 chrX 32627615 32627632 -129972298 - L1MA10 LINE L1 -2 6332 6316 3591 208 28 35 chrX 32627632 32628477 -129971453 - L1ME2 LINE L1 -9 6155 5317 5566 112 2 50 chrX 32628481 32629358 -129970572 + L1PA16 LINE L1 5323 6157 -9 1266 177 42 21 chrX 32629376 32629721 -129970209 - L1ME2 LINE L1 -816 5330 4990 311 303 68 25 chrX 32629944 32630106 -129969824 + MIR SINE MIR 81 249 -13 598 256 6 28 chrX 32630769 32630945 -129968985 + MIR SINE MIR 91 262 0 1408 256 63 37 chrX 32631779 32632601 -129967329 + MER45C DNA AcHobo 3 953 0 490 231 48 43 chrX 32632655 32632877 -129967053 - MLT1J1 LTR MaLR -228 222 1 288 273 23 0 chrX 32633082 32633170 -129966760 - Charlie7 DNA MER1_type 0 2612 2523 22 0 0 0 chrX 32633221 32633243 -129966687 + AT_rich Low_complexity Low_complexity 1 22 0 1308 257 57 48 chrX 32633406 32634195 -129965735 - L2 LINE L2 -3 3310 2516 321 326 81 40 chrX 32634199 32634738 -129965192 + L2 LINE L2 2715 3308 -5 1011 211 14 14 chrX 32636112 32636335 -129963595 - L1ME3A LINE L1 -5 6165 5943 332 260 29 10 chrX 32636435 32636539 -129963391 + MLT1H LTR MaLR 84 189 -360 273 202 101 56 chrX 32636623 32636712 -129963218 + MLT1K LTR MaLR 304 396 -146 686 264 43 40 chrX 32638439 32638860 -129961070 - MLT1H1 LTR MaLR 0 555 94 341 229 29 0 chrX 32639054 32639124 -129960806 + L2 LINE L2 3201 3272 0 977 295 61 35 chrX 32639137 32639564 -129960366 + MLT1J2 LTR MaLR 1 438 -12 2121 230 35 101 chrX 32640016 32640651 -129959279 + MLT1E LTR MaLR 1 593 0 347 265 69 123 chrX 32641169 32641501 -129958429 + Charlie8 DNA MER1_type 151 464 -1953 265 203 34 0 chrX 32641526 32641585 -129958345 + Charlie8 DNA MER1_type 1365 1425 -992 345 325 175 12 chrX 32642329 32642414 -129957516 + L2 LINE L2 2152 2222 -1092 16069 117 53 5 chrX 32642414 32644716 -129955214 + Tigger1 DNA MER2_type 1 2414 -4 345 325 175 12 chrX 32644716 32645030 -129954900 + L2 LINE L2 2222 2616 -698 1482 99 0 5 chrX 32645050 32645251 -129954679 - L1PB1 LINE L1 -1 6150 5951 931 47 0 0 chrX 32645278 32645385 -129954545 - L1PA3 LINE L1 -4 6151 6045 3521 34 0 0 chrX 32645385 32645797 -129954133 + L1P LINE L1 4682 5093 -1053 * 4929 112 12 34 chrX 32645792 32646012 -129953918 - L1PB1 LINE L1 -176 5975 5752 438 69 0 0 chrX 32646012 32646070 -129953860 + (TA)n Simple_repeat Simple_repeat 1 58 0 4929 112 12 34 chrX 32646070 32646754 -129953176 - L1PB1 LINE L1 -399 5752 5091 622 292 12 6 chrX 32647901 32648069 -129951861 + MIR SINE MIR 3 171 -91 2299 136 72 49 chrX 32648265 32648736 -129951194 + L1MB7 LINE L1 5703 6184 0 422 294 56 8 chrX 32649017 32649143 -129950787 + MLT1K LTR MaLR 144 275 -313 370 295 0 0 chrX 32649273 32649368 -129950562 + MLT1K LTR MaLR 481 575 -13 901 247 31 9 chrX 32650710 32650933 -129948997 + MIR SINE MIR 34 261 -1 315 211 7 34 chrX 32651058 32651205 -129948725 + (TA)n Simple_repeat Simple_repeat 2 144 0 191 320 100 20 chrX 32651451 32651551 -129948379 - MIR3 SINE MIR -96 112 5 * 211 289 67 10 chrX 32651509 32651613 -129948317 + MIR SINE MIR 93 202 -60 828 229 70 37 chrX 32652534 32652748 -129947182 + MIR SINE MIR 28 248 -14 221 314 71 29 chrX 32652771 32652911 -129947019 + L2 LINE L2 2891 3036 -236 2452 165 62 19 chrX 32653088 32653568 -129946362 + L1MB8 LINE L1 5672 6172 -6 320 316 30 45 chrX 32653953 32654086 -129945844 - MIR3 SINE MIR -75 133 3 245 348 43 14 chrX 32654319 32654457 -129945473 + MIR SINE MIR 6 147 -115 382 291 60 20 chrX 32654797 32654948 -129944982 - MIR SINE MIR -72 190 34 1301 266 102 22 chrX 32656093 32656545 -129943385 + LTR16C LTR ERVL 4 491 0 426 162 49 84 chrX 32657518 32657650 -129942280 - MLT1H LTR MaLR -14 533 361 242 308 140 0 chrX 32658001 32658108 -129941822 + L2 LINE L2 3116 3237 -35 183 42 0 0 chrX 32658159 32658183 -129941747 + (AATAG)n Simple_repeat Simple_repeat 4 27 0 212 243 86 14 chrX 32658670 32658740 -129941190 - MIR SINE MIR -2 260 186 302 316 75 0 chrX 32658877 32659010 -129940920 + MIR3 SINE MIR 5 147 -61 5038 144 83 24 chrX 32659019 32659379 -129940551 - MER4D LTR ERV1 0 903 566 1475 190 63 7 chrX 32659379 32659663 -129940267 - AluJo SINE Alu -10 302 3 5038 144 83 24 chrX 32659663 32660154 -129939776 - MER4D LTR ERV1 -337 566 1 202 214 71 36 chrX 32660731 32660787 -129939143 - L2 LINE L2 -61 3252 3195 468 0 0 0 chrX 32660797 32660849 -129939081 + (TG)n Simple_repeat Simple_repeat 2 53 0 4641 136 15 9 chrX 32661698 32662476 -129937454 - L1PA16 LINE L1 -162 6004 5223 21 36 0 0 chrX 32662507 32662535 -129937395 + AT_rich Low_complexity Low_complexity 1 28 0 638 107 0 0 chrX 32662579 32662663 -129937267 - THE1C LTR MaLR 0 428 345 1121 130 16 27 chrX 32662665 32662849 -129937081 - THE1C LTR MaLR -190 185 4 11362 116 27 7 chrX 32662852 32664400 -129935530 - THE1C-int LTR MaLR 0 1580 1 1896 161 70 14 chrX 32664400 32664755 -129935175 - THE1C LTR MaLR 0 375 1 1798 189 27 6 chrX 32664977 32665342 -129934588 + L1ME2 LINE L1 5533 5905 -259 380 246 98 16 chrX 32665343 32665485 -129934445 + L1ME2 LINE L1 5990 6304 -30 1309 248 115 30 chrX 32667403 32667907 -129932023 - MLT1H1 LTR MaLR -4 551 5 314 324 88 7 chrX 32668355 32668491 -129931439 - MIR SINE MIR -103 159 13 256 354 8 39 chrX 32669493 32669620 -129930310 - L2 LINE L2 -3 3269 3147 704 301 80 62 chrX 32669805 32670646 -129929284 - L1MEd LINE L1 -5235 884 29 378 221 116 0 chrX 32671981 32672076 -129927854 + L2 LINE L2 1860 1965 -1349 270 0 0 0 chrX 32672453 32672483 -129927447 + (TA)n Simple_repeat Simple_repeat 2 31 0 472 147 26 42 chrX 32672634 32672747 -129927183 + L1ME LINE L1 5686 5796 -370 275 98 0 0 chrX 32672756 32672797 -129927133 - Alu SINE Alu -9 293 253 4645 81 10 0 chrX 32672797 32673380 -129926550 + L1PA13 LINE L1 5573 6161 -2 351 175 0 0 chrX 32674253 32674310 -129925620 - L2 LINE L2 -2 3311 3255 551 224 81 89 chrX 32675323 32675821 -129924109 - MLT1H LTR MaLR 0 549 1 278 324 26 2 chrX 32675845 32675964 -129923966 + MIR SINE MIR 25 146 -72 189 269 104 60 chrX 32676017 32676084 -129923846 - L2 LINE L2 -12 3260 3191 492 280 20 17 chrX 32676417 32676558 -129923372 - MIR3 SINE MIR -10 198 56 423 0 0 0 chrX 32676747 32676794 -129923136 + (A)n Simple_repeat Simple_repeat 1 47 0 314 267 10 50 chrX 32676937 32677038 -129922892 - MIR3 SINE MIR -54 154 58 1985 147 3 0 chrX 32677147 32677447 -129922483 - AluSx SINE Alu -11 301 1 23 0 0 0 chrX 32677720 32677743 -129922187 + AT_rich Low_complexity Low_complexity 1 23 0 398 308 71 63 chrX 32678107 32678360 -129921570 - MIR SINE MIR -3 259 5 442 206 199 22 chrX 32678659 32678795 -129921135 - MER5A DNA MER1_type -21 168 9 638 228 74 7 chrX 32678829 32678978 -129920952 + MIR SINE MIR 104 262 0 756 184 0 32 chrX 32679573 32679698 -129920232 + FLAM_A SINE Alu 3 123 -10 327 254 32 32 chrX 32679713 32679839 -129920091 + Charlie7 DNA MER1_type 31 156 -2456 1013 232 69 67 chrX 32679994 32680443 -129919487 + MLT1J2 LTR MaLR 1 450 0 540 315 39 11 chrX 32680565 32680746 -129919184 + MIR SINE MIR 3 188 -74 2168 164 55 6 chrX 32681164 32681512 -129918418 + MLT1A1 LTR MaLR 1 365 0 766 246 34 0 chrX 32681608 32681783 -129918147 - MER5A DNA MER1_type 0 189 9 229 228 30 119 chrX 32681797 32681898 -129918032 - L3 LINE CR1 -298 1279 1188 618 297 62 83 chrX 32682032 32682487 -129917443 - L2 LINE L2 -11 3261 2817 323 225 7 35 chrX 32682979 32683121 -129916809 + GA-rich Low_complexity Low_complexity 1 138 0 195 222 0 0 chrX 32683180 32683225 -129916705 + GA-rich Low_complexity Low_complexity 3 47 0 696 274 78 10 chrX 32683372 32683607 -129916323 + MIR SINE MIR 1 251 -11 201 121 0 0 chrX 32684086 32684119 -129915811 - L2 LINE L2 -1 3271 3239 402 280 20 0 chrX 32684725 32684825 -129915105 + MIR SINE MIR 53 154 -108 532 347 44 7 chrX 32684851 32685122 -129914808 - MLT1J LTR MaLR 0 511 231 344 216 0 26 chrX 32685117 32685206 -129914724 - MLT1J2 LTR MaLR -253 158 71 * 305 343 21 29 chrX 32685291 32685431 -129914499 + L2 LINE L2 3134 3272 0 676 204 32 38 chrX 32685573 32685730 -129914200 - MER91B DNA MER1_type 0 190 35 322 362 37 6 chrX 32685979 32686142 -129913788 + MIR SINE MIR 49 216 -46 475 247 38 86 chrX 32686213 32686399 -129913531 + MIR SINE MIR 52 228 -34 225 330 11 0 chrX 32687856 32687944 -129911986 - MIR SINE MIR -71 191 103 1140 224 31 8 chrX 32687950 32688205 -129911725 - MIR SINE MIR 0 262 2 1908 129 37 0 chrX 32688879 32689189 -129910741 + AluSx SINE Alu 1 320 0 1349 243 44 3 chrX 32689503 32689820 -129910110 - LTR16C LTR ERVL -9 482 153 490 248 0 40 chrX 32689975 32690100 -129909830 - MLT1K LTR MaLR -5 583 464 390 212 106 73 chrX 32690190 32690369 -129909561 - MLT1K LTR MaLR -132 456 272 3990 124 41 5 chrX 32690391 32691004 -129908926 + L1MA8 LINE L1 5651 6285 -6 257 319 0 0 chrX 32691035 32691126 -129908804 - L1MC4 LINE L1 -1338 6704 6614 403 330 0 0 chrX 32691130 32691242 -129908688 - MLT1K LTR MaLR -326 262 151 863 205 105 5 chrX 32691314 32691504 -129908426 + MER63A DNA MER1_type 2 210 0 511 232 32 16 chrX 32691776 32691901 -129908029 + L2 LINE L2 3187 3313 0 297 0 0 0 chrX 32693224 32693257 -129906673 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 333 0 0 0 chrX 32693256 32693293 -129906637 + (GA)n Simple_repeat Simple_repeat 1 37 0 336 251 123 43 chrX 32693413 32693576 -129906354 - MIR SINE MIR 0 262 87 239 325 90 18 chrX 32693908 32694074 -129905856 - L2 LINE L2 -22 3291 3114 905 250 0 27 chrX 32694080 32694304 -129905626 - MIR SINE MIR -43 219 2 1795 205 143 28 chrX 32694500 32694963 -129904967 - MLT1F LTR MaLR -9 533 18 882 283 217 36 chrX 32695602 32696217 -129903713 - L2 LINE L2 -38 3234 2523 22 0 0 0 chrX 32696531 32696553 -129903377 + AT_rich Low_complexity Low_complexity 1 22 0 1632 163 53 115 chrX 32696684 32697031 -129902899 - MLT1A2 LTR MaLR 0 374 7 210 37 0 0 chrX 32697031 32697058 -129902872 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2043 129 0 4 chrX 32697064 32697342 -129902588 - AluSx SINE Alu -35 277 1 1632 163 53 115 chrX 32697342 32697386 -129902544 - MLT1A2 LTR MaLR -328 46 1 459 277 78 40 chrX 32697496 32697808 -129902122 + L1ME4a LINE L1 4884 5183 -938 1514 169 0 54 chrX 32697808 32698104 -129901826 + AluJo SINE Alu 33 312 0 459 277 78 40 chrX 32698104 32698842 -129901088 + L1ME4a LINE L1 5183 5969 -152 758 183 18 12 chrX 32698851 32699015 -129900915 + MER104 DNA Tc2 13 177 -3 303 307 35 35 chrX 32699925 32700039 -129899891 + MIR SINE MIR 40 153 -55 280 254 0 42 chrX 32700377 32700448 -129899482 - MIR SINE MIR -78 184 117 1037 227 37 19 chrX 32701087 32701303 -129898627 + MER58A DNA MER1_type 4 223 -1 217 162 0 0 chrX 32701743 32701780 -129898150 - MIR3 SINE MIR -22 186 150 2460 128 25 0 chrX 32702042 32702395 -129897535 - THE1B LTR MaLR -2 362 1 322 388 63 34 chrX 32703334 32703571 -129896359 - L2 LINE L2 -9 3263 3020 408 313 162 35 chrX 32703596 32703923 -129896007 - L2 LINE L2 -1253 2061 1777 195 42 0 0 chrX 32703923 32703947 -129895983 + (TG)n Simple_repeat Simple_repeat 2 25 0 408 313 162 35 chrX 32703947 32704299 -129895631 - L2 LINE L2 -1537 1777 1296 324 206 59 0 chrX 32706739 32706807 -129893123 - MER5A DNA MER1_type -77 112 41 1062 312 213 10 chrX 32707361 32708083 -129891847 - L3 LINE CR1 -109 1468 600 198 209 0 0 chrX 32708321 32708364 -129891566 + GA-rich Low_complexity Low_complexity 1 43 0 664 261 77 24 chrX 32709664 32709771 -129890159 + L1ME3A LINE L1 5615 5715 -455 766 128 80 70 chrX 32709771 32709958 -129889972 - MER53 DNA DNA 0 189 1 664 261 77 24 chrX 32709958 32710137 -129889793 + L1ME3A LINE L1 5715 5916 -254 21 36 0 0 chrX 32710159 32710187 -129889743 + AT_rich Low_complexity Low_complexity 1 28 0 398 344 102 5 chrX 32710573 32710788 -129889142 - L2 LINE L2 -220 3052 2817 319 372 53 76 chrX 32711334 32711689 -129888241 - L2 LINE L2 -5 3267 2921 278 357 39 0 chrX 32712479 32712608 -129887322 - MIR SINE MIR -20 242 109 260 315 123 8 chrX 32713238 32713368 -129886562 - MIR3 SINE MIR -43 165 21 1398 159 23 5 chrX 32713643 32713863 -129886067 + MER58A DNA MER1_type 1 224 0 219 184 61 0 chrX 32714494 32714543 -129885387 - MIR3 SINE MIR -42 166 115 193 276 105 72 chrX 32715315 32715373 -129884557 - MIR3 SINE MIR -49 159 104 2152 248 74 25 chrX 32715373 32716005 -129883925 + MLT2F LTR ERVL 1 663 0 193 276 105 72 chrX 32716005 32716098 -129883832 - MIR3 SINE MIR -104 104 3 622 286 17 42 chrX 32716984 32717222 -129882708 + L2 LINE L2 2867 3098 -215 226 167 17 133 chrX 32717439 32717499 -129882431 - MER91C DNA MER1_type -63 77 25 409 333 56 0 chrX 32719819 32719963 -129879967 - MIR3 SINE MIR -24 184 33 263 213 40 40 chrX 32720726 32720801 -129879129 - MIR3 SINE MIR -49 159 85 5304 194 26 35 chrX 32720996 32722626 -129877304 - L1MD2 LINE L1 -16 6737 5124 936 210 41 0 chrX 32722626 32722869 -129877061 + MER69 DNA AcHobo 2183 2435 -91 3824 208 64 65 chrX 32722899 32724094 -129875836 - L1MD2 LINE L1 -1425 5115 3922 * 16432 170 22 9 chrX 32724092 32727860 -129872070 - L1MA5 LINE L1 -295 7424 3610 252 0 0 0 chrX 32727864 32727892 -129872038 + (TC)n Simple_repeat Simple_repeat 2 29 0 238 214 83 0 chrX 32727892 32727976 -129871954 + L1MC4 LINE L1 6614 6704 -1338 207 170 43 0 chrX 32727976 32728023 -129871907 + (TA)n Simple_repeat Simple_repeat 1 49 0 1590 186 4 7 chrX 32728026 32728300 -129871630 - AluJo SINE Alu -33 279 7 3757 237 54 32 chrX 32728305 32729640 -129870290 - L1MA5 LINE L1 -3960 3605 2242 1396 239 54 10 chrX 32729655 32730323 -129869607 - L1MD2 LINE L1 -3639 2901 2212 2450 89 48 20 chrX 32730323 32730801 -129869129 - LTR12 LTR ERV1 0 714 351 2970 205 74 21 chrX 32730801 32730844 -129869086 - L1MD2 LINE L1 -4628 1912 1873 279 0 0 0 chrX 32730844 32730875 -129869055 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2970 205 74 21 chrX 32730875 32731890 -129868040 - L1MD2 LINE L1 -4667 1873 828 302 333 29 0 chrX 32732017 32732122 -129867808 - L1MD2 LINE L1 -6120 423 316 686 256 5 44 chrX 32732416 32732619 -129867311 - L1MD2 LINE L1 -6329 211 17 55 48 0 0 chrX 32733090 32733173 -129866757 + AT_rich Low_complexity Low_complexity 1 83 0 38 68 0 0 chrX 32733386 32733459 -129866471 + AT_rich Low_complexity Low_complexity 1 73 0 563 287 62 21 chrX 32734334 32734720 -129865210 - L1MEc LINE L1 -855 1635 1306 372 298 58 78 chrX 32734752 32734994 -129864936 - L1MEc LINE L1 -4970 1149 913 2155 109 41 0 chrX 32735005 32735299 -129864631 + AluY SINE Alu 1 306 -5 21 57 0 0 chrX 32736022 32736057 -129863873 + AT_rich Low_complexity Low_complexity 1 35 0 589 341 108 45 chrX 32736456 32737504 -129862426 - L2 LINE L2 -2 3270 2150 282 321 88 23 chrX 32737874 32738089 -129861841 + L3b LINE CR1 1273 1501 -82 320 298 107 45 chrX 32738179 32738421 -129861509 + L2 LINE L2 2833 3089 -183 323 295 84 48 chrX 32738437 32738603 -129861327 - L2 LINE L2 -6 3307 3136 354 299 28 36 chrX 32738626 32738785 -129861145 - MLT1J1 LTR MaLR -46 465 243 1034 186 49 39 chrX 32738792 32738996 -129860934 + MER3 DNA MER1_type 1 206 -3 1322 228 115 29 chrX 32739122 32739538 -129860392 - HsTC2 DNA Tc2 0 1900 1273 * 3660 195 39 1 chrX 32739535 32740185 -129859745 - HsTC2 DNA Tc2 -1153 745 72 212 231 0 0 chrX 32740334 32740373 -129859557 + polypurine Low_complexity Low_complexity 2 40 0 237 159 0 0 chrX 32740413 32740457 -129859473 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 208 274 24 71 chrX 32742152 32742236 -129857694 - MIR SINE MIR -81 181 102 464 235 204 0 chrX 32742591 32742723 -129857207 - MLT1G1 LTR MaLR -14 528 370 719 219 164 44 chrX 32742760 32743034 -129856896 - MLT1G1 LTR MaLR -283 312 6 30 27 0 0 chrX 32743223 32743260 -129856670 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chrX 32743752 32743784 -129856146 + AT_rich Low_complexity Low_complexity 1 32 0 295 323 42 10 chrX 32744136 32744232 -129855698 - MIR3 SINE MIR -105 103 5 4042 112 11 4 chrX 32745226 32745779 -129854151 + L1PA15 LINE L1 5608 6164 -1 299 271 153 42 chrX 32745894 32746038 -129853892 + MIR3 SINE MIR 46 205 -3 203 298 71 0 chrX 32746892 32746976 -129852954 + L2 LINE L2 2961 3050 -222 554 309 72 39 chrX 32747094 32747560 -129852370 - MLT1K LTR MaLR 0 588 78 249 240 0 0 chrX 32747635 32747685 -129852245 + L2 LINE L2 3205 3254 -18 1647 274 21 38 chrX 32748413 32748986 -129850944 - MER115 DNA AcHobo -7 686 34 342 0 0 0 chrX 32749103 32749141 -129850789 + (CA)n Simple_repeat Simple_repeat 1 38 0 1138 308 65 38 chrX 32749338 32749816 -129850114 + LTR16C LTR ERVL 1 491 0 506 335 7 0 chrX 32749882 32750034 -129849896 - MIR SINE MIR -105 157 5 207 379 0 0 chrX 32750186 32750273 -129849657 + MIR SINE MIR 147 233 -29 375 253 94 24 chrX 32751487 32751671 -129848259 + MIR SINE MIR 32 220 -42 185 174 43 0 chrX 32751954 32752000 -129847930 - L2 LINE L2 -1553 1761 1714 319 139 125 28 chrX 32753655 32753727 -129846203 + LTR67 LTR ERVL 477 555 -2 647 305 109 52 chrX 32753743 32754182 -129845748 - L2 LINE L2 0 3272 2809 254 321 46 28 chrX 32754540 32754649 -129845281 + L2 LINE L2 2710 2820 -494 2690 212 52 118 chrX 32754715 32755976 -129843954 - L1MC4 LINE L1 -9 8033 6857 221 209 105 67 chrX 32755976 32756081 -129843849 - L2 LINE L2 -923 2391 2283 261 57 0 0 chrX 32756082 32756117 -129843813 + (CA)n Simple_repeat Simple_repeat 1 35 0 324 181 12 60 chrX 32756278 32756361 -129843569 + Charlie7 DNA MER1_type 29 107 -2505 294 206 38 46 chrX 32756346 32756477 -129843453 + Charlie7 DNA MER1_type 2434 2563 -49 * 329 318 107 34 chrX 32756494 32756821 -129843109 - L2 LINE L2 -1064 2250 1900 277 283 22 72 chrX 32757639 32757777 -129842153 + MIR SINE MIR 59 189 -73 1596 262 75 36 chrX 32757821 32758671 -129841259 - L2 LINE L2 0 3313 2422 261 309 18 45 chrX 32758745 32758855 -129841075 + MER117 DNA MER1_type 50 156 -41 1169 137 38 11 chrX 32758904 32759087 -129840843 + MER5A DNA MER1_type 1 188 -1 1143 134 0 11 chrX 32759808 32760054 -129839876 + AluJb SINE Alu 2 312 0 226 140 140 40 chrX 32760142 32760192 -129839738 + L1P3 LINE L1 689 743 -5132 1359 279 150 74 chrX 32760248 32761301 -129838629 - MER52A LTR ERV1 0 1755 623 293 320 155 53 chrX 32761508 32762129 -129837801 + L2 LINE L2 1919 2602 -712 273 255 166 82 chrX 32762123 32762491 -129837439 + L2 LINE L2 2839 3237 -35 * 295 340 107 7 chrX 32762937 32763087 -129836843 + L2 LINE L2 3104 3268 -4 871 272 168 37 chrX 32763687 32764091 -129835839 - LTR16A LTR ERVL 0 450 1 403 286 63 8 chrX 32764599 32764725 -129835205 - MIR3 SINE MIR -52 156 24 2281 106 0 0 chrX 32764770 32765071 -129834859 - AluSx SINE Alu -11 301 1 1125 229 40 8 chrX 32766284 32766533 -129833397 - MIR SINE MIR -2 260 4 510 227 100 0 chrX 32767812 32767922 -129832008 + MER96 DNA MER1_type? 13 133 -42 2985 68 3 0 chrX 32768588 32768955 -129830975 - L1PA6 LINE L1 0 6154 5787 1267 120 5 5 chrX 32769058 32769242 -129830688 - MER4E LTR ERV1 0 766 583 5327 110 26 62 chrX 32769245 32770102 -129829828 - LTR12 LTR ERV1 0 826 1 683 167 37 104 chrX 32770190 32770489 -129829441 - pTR5 LTR ERV1 -1418 1020 742 581 104 0 0 chrX 32770489 32770566 -129829364 - MADE1 DNA Mariner -1 79 3 983 101 0 63 chrX 32770566 32770724 -129829206 - MER4B LTR ERV1 -176 434 287 1721 168 46 37 chrX 32770724 32771102 -129828828 + MSTA LTR MaLR 1 428 0 1872 101 3 51 chrX 32771102 32771398 -129828532 - MER4B LTR ERV1 -319 291 10 320 317 50 0 chrX 32771438 32771558 -129828372 - L3b LINE CR1 -202 1381 1256 500 271 180 28 chrX 32773098 32773353 -129826577 - LTR16C LTR ERVL -9 482 189 243 350 48 0 chrX 32774554 32774657 -129825273 + MLT1K LTR MaLR 141 248 -340 578 242 73 64 chrX 32774703 32774750 -129825180 + MLT1K LTR MaLR 368 413 -175 2831 16 0 13 chrX 32774750 32775065 -129824865 + AluYa5 SINE Alu 1 311 0 578 242 73 64 chrX 32775065 32775236 -129824694 + MLT1K LTR MaLR 413 588 0 1131 216 73 70 chrX 32775324 32775709 -129824221 + MLT1C LTR MaLR 76 461 -6 36 0 0 0 chrX 32775770 32775806 -129824124 + AT_rich Low_complexity Low_complexity 1 36 0 715 269 14 55 chrX 32775920 32776139 -129823791 + MIR SINE MIR 43 252 -10 360 161 12 37 chrX 32776202 32776283 -129823647 + L1M4 LINE L1 2933 3011 -3135 * 942 214 0 48 chrX 32776282 32776394 -129823536 + L1M4 LINE L1 3796 3912 -2234 767 158 0 22 chrX 32776394 32776533 -129823397 + L1PA8 LINE L1 6037 6172 0 942 214 0 48 chrX 32776533 32776609 -129823321 + L1M4 LINE L1 3912 3972 -2174 485 70 127 0 chrX 32776609 32776680 -129823250 - MADE1 DNA Mariner 0 80 1 942 214 0 48 chrX 32776680 32776738 -129823192 + L1M4 LINE L1 3972 4031 -2115 1994 128 14 7 chrX 32776759 32777088 -129822842 + AluSx SINE Alu 1 331 0 4935 88 24 15 chrX 32777093 32777765 -129822165 - L1PA12 LINE L1 -15 6153 5476 942 37 0 0 chrX 32777780 32777889 -129822041 - L1PA4 LINE L1 -3 6152 6044 17642 165 27 6 chrX 32777889 32779633 -129820297 - L1PA12 LINE L1 -678 5483 3777 180 0 0 0 chrX 32779633 32779653 -129820277 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 17642 165 27 6 chrX 32779653 32781272 -129818658 - L1PA12 LINE L1 -2384 3777 2059 734 151 9 0 chrX 32781275 32781381 -129818549 - U6 snRNA snRNA 0 107 1 1094 214 48 45 chrX 32781389 32781767 -129818163 + L1M4 LINE L1 4033 4411 -1735 236 269 0 0 chrX 32781767 32781819 -129818111 + Tigger5 DNA MER2_type 4 55 -2268 * 315 235 15 15 chrX 32781788 32781856 -129818074 + Tigger5 DNA MER2_type 2251 2318 -5 470 213 2 0 chrX 32781859 32781960 -129817970 - Tigger5 DNA MER2_type -2235 88 7 502 200 0 0 chrX 32781975 32782060 -129817870 + Tigger5 DNA MER2_type 2239 2323 0 1848 192 76 20 chrX 32782061 32782565 -129817365 + L1MD2 LINE L1 5665 6136 -223 13577 195 47 17 chrX 32782566 32783095 -129816835 + L1MB3 LINE L1 4 515 -5901 783 183 0 29 chrX 32783095 32783232 -129816698 + FLAM_C SINE Alu 1 133 0 13577 195 47 17 chrX 32783232 32786538 -129813392 + L1MB3 LINE L1 515 4174 -2242 3120 144 20 6 chrX 32786538 32787045 -129812885 + MER75 DNA T2_type 1 514 0 13577 195 47 17 chrX 32787045 32788596 -129811334 + L1MB3 LINE L1 4174 5676 -740 30055 106 29 69 chrX 32788598 32790763 -129809167 + L1PA7 LINE L1 1 2251 -3903 2309 91 3 3 chrX 32790763 32791071 -129808859 - AluY SINE Alu -3 308 1 30055 106 29 69 chrX 32791071 32791525 -129808405 + L1PA7 LINE L1 2251 2722 -3432 231 88 0 0 chrX 32791525 32791559 -129808371 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 30055 106 29 69 chrX 32791559 32793195 -129806735 + L1PA7 LINE L1 2722 4422 -1732 2726 16 0 3 chrX 32793195 32793498 -129806432 + AluYa5 SINE Alu 1 302 -9 30055 106 29 69 chrX 32793498 32795658 -129804272 + L1PA7 LINE L1 4422 6154 0 4205 163 12 3 chrX 32795666 32796413 -129803517 + L1MB3 LINE L1 5664 6417 -2 229 292 0 0 chrX 32796461 32796526 -129803404 - MIR SINE MIR -9 253 189 350 219 237 6 chrX 32796544 32796689 -129803241 - MER5A DNA MER1_type 0 189 6 308 258 67 22 chrX 32797620 32797709 -129802221 - L1ME2 LINE L1 0 6164 6072 597 65 103 0 chrX 32797730 32798132 -129801798 + (TA)n Simple_repeat Simple_repeat 1 443 0 455 225 132 61 chrX 32798525 32798806 -129801124 - MLT1H LTR MaLR -214 335 1 771 115 0 16 chrX 32799414 32799536 -129800394 + MER2 DNA MER2_type 88 207 -138 672 245 65 0 chrX 32799613 32799876 -129800054 + L1MD2 LINE L1 2376 2657 -3883 6778 125 7 3 chrX 32799893 32801813 -129798117 - L1PA13 LINE L1 -47 6116 4192 1629 238 14 2 chrX 32801811 32802231 -129797699 + L1MD2 LINE L1 2654 3078 -3462 * 1375 89 0 38 chrX 32802235 32802448 -129797482 - AluY SINE Alu 0 311 107 1783 253 37 9 chrX 32802449 32803101 -129796829 + L1MD2 LINE L1 3070 3739 -2801 4524 226 48 44 chrX 32803148 32804273 -129795657 + L1MD2 LINE L1 4081 5200 -1553 240 86 0 0 chrX 32804273 32804308 -129795622 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4524 226 48 44 chrX 32804308 32805828 -129794102 + L1MD2 LINE L1 5200 6740 -13 2449 70 0 0 chrX 32806026 32806327 -129793603 - AluY SINE Alu -10 301 1 1754 247 80 8 chrX 32806491 32806968 -129792962 - MLT1E2 LTR MaLR 0 626 116 8220 178 50 11 chrX 32806972 32807018 -129792912 - L1MB2 LINE L1 0 6407 6364 2352 90 3 0 chrX 32807018 32807318 -129792612 - AluSp SINE Alu -12 301 1 8220 178 50 11 chrX 32807318 32809729 -129790201 - L1MB2 LINE L1 -43 6364 3844 3733 238 70 21 chrX 32809733 32810744 -129789186 - L1MB2 LINE L1 -2866 3516 2556 1288 115 0 10 chrX 32810744 32810936 -129788994 + L1PA15 LINE L1 5963 6152 -13 3733 238 70 21 chrX 32810936 32812200 -129787730 - L1MB2 LINE L1 -3826 2556 1130 584 280 72 88 chrX 32812422 32812822 -129787108 - L1MB2 LINE L1 -5497 806 413 312 181 352 0 chrX 32812859 32812964 -129786966 - MLT1E2 LTR MaLR -510 144 3 296 274 14 82 chrX 32812968 32813114 -129786816 - MLT1H LTR MaLR -32 517 382 697 253 49 41 chrX 32813144 32813397 -129786533 - MLT1H LTR MaLR -253 296 1 941 265 53 4 chrX 32814127 32814372 -129785558 - MIR SINE MIR 0 262 6 261 57 0 0 chrX 32814376 32814411 -129785519 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 252 52 0 chrX 32814429 32814544 -129785386 + L1ME4a LINE L1 5991 6111 -10 446 280 15 0 chrX 32814641 32814773 -129785157 - MLT1L LTR MaLR -143 472 339 538 243 22 29 chrX 32815099 32815235 -129784695 + MIR3 SINE MIR 40 174 -34 465 34 0 0 chrX 32815605 32815664 -129784266 + (TC)n Simple_repeat Simple_repeat 2 60 0 270 0 0 0 chrX 32815663 32815693 -129784237 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 2282 179 44 2 chrX 32815845 32816252 -129783678 + MSTB1 LTR MaLR 4 427 -5 488 303 96 22 chrX 32817749 32818115 -129781815 + L1ME4a LINE L1 5500 5892 -229 33 43 0 0 chrX 32818386 32818433 -129781497 + AT_rich Low_complexity Low_complexity 1 47 0 321 331 15 7 chrX 32818485 32818621 -129781309 + L1ME LINE L1 5257 5393 -769 315 305 105 0 chrX 32818658 32818822 -129781108 + L1ME LINE L1 5480 5657 -505 311 189 27 45 chrX 32818935 32819046 -129780884 - LTR16A1 LTR ERVL -82 375 267 28 0 0 0 chrX 32819359 32819387 -129780543 + AT_rich Low_complexity Low_complexity 1 28 0 256 233 33 0 chrX 32819598 32819658 -129780272 + L2 LINE L2 3208 3269 -3 568 173 0 23 chrX 32819948 32820081 -129779849 + L1MB7 LINE L1 6037 6166 -18 3784 110 46 5 chrX 32820081 32820681 -129779249 + L1MA5 LINE L1 5662 6295 -5 1954 121 43 67 chrX 32821619 32821992 -129777938 + THE1B LTR MaLR 1 364 0 1554 244 78 17 chrX 32822076 32822539 -129777391 - LTR16C LTR ERVL 0 491 1 453 248 233 48 chrX 32823049 32823259 -129776671 + MIR SINE MIR 2 250 -12 193 384 30 10 chrX 32824462 32824561 -129775369 - L2 LINE L2 -213 3059 2959 437 334 90 17 chrX 32824802 32825146 -129774784 - L1MC4a LINE L1 -1876 5932 5564 957 246 137 23 chrX 32825148 32825535 -129774395 - L2 LINE L2 -3 3310 2880 192 289 66 13 chrX 32825551 32825627 -129774303 + MIR SINE MIR 166 245 -17 652 264 91 54 chrX 32826290 32826603 -129773327 + L1ME LINE L1 5378 5711 -410 2383 140 40 26 chrX 32826603 32827031 -129772899 + Tigger2a DNA MER2_type 1 434 0 652 264 91 54 chrX 32827031 32827123 -129772807 + L1ME LINE L1 5711 5798 -323 3105 182 80 18 chrX 32828063 32828693 -129771237 + L1ME2 LINE L1 5447 6123 -41 2372 151 8 8 chrX 32828693 32829083 -129770847 - MLT1B LTR MaLR 0 390 1 3105 182 80 18 chrX 32829083 32829128 -129770802 + L1ME2 LINE L1 6123 6164 0 945 219 31 10 chrX 32829275 32829467 -129770463 - MIR SINE MIR -55 207 12 211 237 0 0 chrX 32829629 32829667 -129770263 + L2 LINE L2 3254 3291 -22 243 244 49 24 chrX 32829840 32829922 -129770008 - L1ME3A LINE L1 -146 6024 5941 994 198 14 19 chrX 32829927 32830134 -129769796 - MLT1C LTR MaLR -2 465 260 238 143 48 0 chrX 32830120 32830162 -129769768 - MLT1C LTR MaLR -423 44 1 * 236 192 0 0 chrX 32830212 32830264 -129769666 + T-rich Low_complexity Low_complexity 1 52 0 7744 23 0 0 chrX 32830265 32831301 -129768629 - L1PA3 LINE L1 -3 6152 5117 1441 259 32 28 chrX 32831301 32831773 -129768157 - L1ME3A LINE L1 -278 5892 5419 236 268 0 0 chrX 32834114 32834170 -129765760 + MLT1K LTR MaLR 23 78 -471 3934 171 83 16 chrX 32834171 32834945 -129764985 - LTR1B LTR ERV1 0 826 1 555 204 8 30 chrX 32835310 32835442 -129764488 - MIR SINE MIR -87 175 47 534 224 194 6 chrX 32835932 32836097 -129763833 + MIR SINE MIR 12 207 -55 381 252 143 15 chrX 32836100 32836314 -129763616 - MLT1L LTR MaLR -4 606 329 370 264 124 31 chrX 32837170 32837299 -129762631 + MLT1K LTR MaLR 102 242 -346 1373 206 30 99 chrX 32837459 32837862 -129762068 + MLT1B LTR MaLR 1 375 -15 3063 173 68 44 chrX 32838173 32838883 -129761047 - LTR8A LTR ERV1 0 727 1 1985 122 0 4 chrX 32839987 32840266 -129759664 + AluSx SINE Alu 1 278 -34 276 53 0 0 chrX 32840267 32840305 -129759625 + (CA)n Simple_repeat Simple_repeat 1 38 0 228 361 0 24 chrX 32841362 32841445 -129758485 - MER115 DNA AcHobo -612 81 1 1556 213 104 0 chrX 32841938 32842332 -129757598 + Charlie4a DNA MER1_type 74 508 0 475 290 153 61 chrX 32842676 32843100 -129756830 + MLT1K LTR MaLR 126 588 0 303 282 24 0 chrX 32843237 32843322 -129756608 - MIR SINE MIR -122 140 54 502 235 6 6 chrX 32843731 32843897 -129756033 + CT-rich Low_complexity Low_complexity 3 168 0 560 275 64 40 chrX 32844361 32844612 -129755318 - MIR SINE MIR 0 262 6 288 307 95 28 chrX 32844935 32845114 -129754816 + MIR3 SINE MIR 17 207 -1 447 244 165 57 chrX 32845313 32845543 -129754387 + MIR SINE MIR 8 262 0 537 326 102 18 chrX 32845714 32846057 -129753873 - LTR16A LTR ERVL -78 372 1 694 287 77 41 chrX 32847338 32847797 -129752133 - LTR16A1 LTR ERVL -5 452 3 296 299 128 27 chrX 32849269 32849430 -129750500 - MER5A DNA MER1_type -6 174 2 2100 127 9 96 chrX 32849438 32849864 -129750066 - MLT1B LTR MaLR -1 389 1 393 58 0 0 chrX 32850463 32850515 -129749415 + (TC)n Simple_repeat Simple_repeat 2 53 0 916 300 21 4 chrX 32851214 32851454 -129748476 + MIR SINE MIR 19 262 0 361 323 30 12 chrX 32851678 32851842 -129748088 - L2 LINE L2 -234 3038 2872 355 230 27 0 chrX 32853291 32853365 -129746565 + MIR SINE MIR 42 117 -91 25 65 0 0 chrX 32854325 32854371 -129745559 + AT_rich Low_complexity Low_complexity 1 46 0 1142 270 137 42 chrX 32854671 32854809 -129745121 - L1ME4a LINE L1 -27 6094 5971 186 43 0 0 chrX 32854809 32854832 -129745098 + (CA)n Simple_repeat Simple_repeat 1 23 0 1142 270 137 42 chrX 32854832 32855408 -129744522 - L1ME4a LINE L1 -150 5971 5312 2235 99 0 3 chrX 32855525 32855829 -129744101 - AluSx SINE Alu -9 303 1 182 244 24 0 chrX 32856246 32856287 -129743643 - MIR SINE MIR -142 66 25 341 205 26 26 chrX 32856607 32856685 -129743245 - L2 LINE L2 0 3272 3195 225 306 42 0 chrX 32856735 32856807 -129743123 - L2 LINE L2 -221 3051 2977 1034 211 133 31 chrX 32856917 32857211 -129742719 - MER5C DNA MER1_type 0 324 1 370 294 75 12 chrX 32857222 32857382 -129742548 - L2 LINE L2 -1315 1999 1830 470 259 19 22 chrX 32857540 32857739 -129742191 + MIR3 SINE MIR 4 202 -6 528 16 0 0 chrX 32858762 32858823 -129741107 + (CA)n Simple_repeat Simple_repeat 1 61 0 29 0 0 0 chrX 32859849 32859878 -129740052 + AT_rich Low_complexity Low_complexity 1 29 0 323 206 41 27 chrX 32859986 32860059 -129739871 - L2 LINE L2 -2 3270 3197 * 354 299 162 10 chrX 32860058 32860255 -129739675 + MIR SINE MIR 28 254 -8 302 251 205 54 chrX 32861254 32861493 -129738437 - LTR16A1 LTR ERVL -180 277 3 230 293 40 20 chrX 32861501 32861600 -129738330 - MIR SINE MIR -56 206 106 252 59 0 0 chrX 32861860 32861894 -129738036 + (TG)n Simple_repeat Simple_repeat 1 34 0 466 306 16 38 chrX 32861957 32862422 -129737508 + CT-rich Low_complexity Low_complexity 1 454 0 21 0 0 0 chrX 32862658 32862679 -129737251 + GC_rich Low_complexity Low_complexity 1 21 0 182 330 11 43 chrX 32863321 32863415 -129736515 - MIR SINE MIR -55 207 117 236 242 44 77 chrX 32863441 32863532 -129736398 + MER91B DNA MER1_type 1 88 -102 808 252 80 52 chrX 32863717 32864042 -129735888 + MLT1H LTR MaLR 216 549 0 544 239 25 43 chrX 32864243 32864406 -129735524 - MIR SINE MIR -96 166 7 610 216 112 0 chrX 32864818 32864943 -129734987 - MIR SINE MIR -116 146 8 464 269 108 24 chrX 32865526 32865693 -129734237 - MIR SINE MIR -1 261 81 326 291 8 0 chrX 32866075 32866192 -129733738 + (TG)n Simple_repeat Simple_repeat 1 118 0 198 0 0 0 chrX 32867442 32867464 -129732466 + (CTG)n Simple_repeat Simple_repeat 2 23 0 40 0 0 0 chrX 32869203 32869243 -129730687 + AT_rich Low_complexity Low_complexity 1 40 0 668 170 52 7 chrX 32869346 32869481 -129730449 + MER5A DNA MER1_type 1 141 -48 626 261 8 0 chrX 32869645 32869779 -129730151 - LTR16A LTR ERVL -5 445 311 731 279 117 44 chrX 32869793 32870202 -129729728 - L2 LINE L2 -527 2787 2349 201 175 0 0 chrX 32870328 32870368 -129729562 + GA-rich Low_complexity Low_complexity 6 45 0 911 303 24 8 chrX 32870382 32870636 -129729294 - MIR SINE MIR 0 262 5 441 315 14 7 chrX 32870729 32870872 -129729058 - MIR SINE MIR -115 147 4 1363 141 0 23 chrX 32871177 32871397 -129728533 + AluJb SINE Alu 84 298 -14 1024 230 50 0 chrX 32871543 32871765 -129728165 + MLT1E1 LTR MaLR 419 651 -3 2211 246 70 9 chrX 32871814 32872339 -129727591 + MLT1G LTR MaLR 32 588 -2 229 240 27 42 chrX 32872499 32872579 -129727351 - MIR SINE MIR -69 139 72 383 284 0 21 chrX 32873930 32874025 -129725905 - MIR SINE MIR -70 192 100 1050 256 81 77 chrX 32874172 32874703 -129725227 - MLT1H1 LTR MaLR 0 555 23 2008 177 37 8 chrX 32875878 32876257 -129723673 - MLT1B LTR MaLR 0 390 1 2090 116 7 0 chrX 32876601 32876904 -129723026 + AluSc SINE Alu 4 308 -1 584 27 14 0 chrX 32876910 32876984 -129722946 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 271 265 48 36 chrX 32877064 32877147 -129722783 + MIR SINE MIR 63 146 -62 1727 147 3 36 chrX 32877444 32877750 -129722180 - AluJb SINE Alu -6 306 11 321 26 0 0 chrX 32877831 32877869 -129722061 + (TC)n Simple_repeat Simple_repeat 1 38 0 1430 235 121 14 chrX 32877895 32878331 -129721599 + L2 LINE L2 2528 2999 -314 4283 203 48 127 chrX 32878469 32880477 -129719453 - L1MDb LINE L1 -1271 5135 3285 * 30411 53 2 0 chrX 32880462 32886592 -129713338 - L1PA5 LINE L1 0 6154 11 3143 240 28 23 chrX 32886599 32886990 -129712940 - L1MDb LINE L1 -3108 3298 2911 2134 131 0 7 chrX 32886990 32887288 -129712642 + AluSx SINE Alu 1 296 -16 3143 240 28 23 chrX 32887288 32887921 -129712009 - L1MDb LINE L1 -3495 2911 2307 1132 208 23 15 chrX 32887902 32888167 -129711763 - L1MD3 LINE L1 0 7995 7729 * 4239 227 72 23 chrX 32888173 32889679 -129710251 - L1MDb LINE L1 -4104 2302 770 619 321 12 0 chrX 32890266 32890506 -129709424 + L2 LINE L2 2104 2346 -968 1015 265 117 9 chrX 32890506 32891111 -129708819 + L2 LINE L2 2626 3313 0 244 270 0 0 chrX 32892232 32892248 -129707682 - L1MA10 LINE L1 -1 6333 6318 2574 195 102 15 chrX 32892248 32892837 -129707093 - L1ME2 LINE L1 -9 6155 5516 293 265 87 41 chrX 32893081 32893253 -129706677 + MIR SINE MIR 3 181 -58 213 222 128 86 chrX 32893520 32893637 -129706293 + MIR SINE MIR 64 185 -23 286 191 155 0 chrX 32893808 32893892 -129706038 + MIR SINE MIR 100 196 -66 1065 264 77 47 chrX 32894047 32894449 -129705481 - LTR16A LTR ERVL -10 440 27 561 226 8 0 chrX 32894454 32894587 -129705343 + MIR SINE MIR 102 235 -27 2172 181 48 7 chrX 32896211 32896626 -129703304 - MSTB1 LTR MaLR 0 432 1 440 314 96 57 chrX 32897387 32897858 -129702072 - LTR16C LTR ERVL -2 489 1 195 329 76 0 chrX 32897913 32897992 -129701938 - MIR3 SINE MIR -37 171 87 1443 195 137 89 chrX 32898361 32898667 -129701263 + MLT1F1 LTR MaLR 1 369 -198 5738 21 0 5 chrX 32898667 32899317 -129700613 + L1PA3 LINE L1 5509 6155 0 1443 195 137 89 chrX 32899317 32899527 -129700403 + MLT1F1 LTR MaLR 369 567 0 228 241 19 0 chrX 32899585 32899639 -129700291 - MLT1K LTR MaLR -25 563 509 2782 176 11 11 chrX 32899877 32900340 -129699590 + MLT2B1 LTR ERVL 1 466 -54 1049 45 45 0 chrX 32900340 32900497 -129699433 + (TTTC)n Simple_repeat Simple_repeat 4 167 0 2782 176 11 11 chrX 32900497 32900509 -129699421 + MLT2B1 LTR ERVL 465 476 -44 281 175 258 10 chrX 32900509 32900606 -129699324 + MLT2B1 LTR ERVL 400 520 0 297 287 92 37 chrX 32900925 32901089 -129698841 + MIR3 SINE MIR 30 202 -6 207 356 0 26 chrX 32902304 32902419 -129697511 + GA-rich Low_complexity Low_complexity 1 112 0 207 0 0 0 chrX 32902520 32902543 -129697387 + (CAA)n Simple_repeat Simple_repeat 2 24 0 293 110 0 55 chrX 32903152 32903225 -129696705 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 273 325 0 0 chrX 32903309 32903392 -129696538 - L2 LINE L2 -4 3268 3186 350 227 67 50 chrX 32904155 32904274 -129695656 + MLT1J LTR MaLR 1 121 -390 293 300 0 10 chrX 32904628 32904728 -129695202 - LTR33A LTR ERVL -2 521 423 825 266 196 6 chrX 32904767 32905124 -129694806 + LTR16A LTR ERVL 26 450 0 288 286 84 80 chrX 32905324 32905537 -129694393 - LTR33A LTR ERVL -307 216 3 1070 179 0 36 chrX 32905611 32905806 -129694124 + MLT1E LTR MaLR 406 593 0 526 257 14 7 chrX 32906053 32906197 -129693733 - MER5B DNA MER1_type 0 178 34 793 163 31 31 chrX 32906206 32906366 -129693564 - MER96B DNA MER1_type? -8 409 250 720 249 6 40 chrX 32906698 32906871 -129693059 - MER63A DNA MER1_type 0 210 44 275 266 73 33 chrX 32907335 32907486 -129692444 + MIR SINE MIR 52 207 -55 2386 184 55 63 chrX 32908232 32908819 -129691111 + MLT1G LTR MaLR 9 590 0 292 400 0 0 chrX 32909068 32909178 -129690752 - L2 LINE L2 0 3313 3204 1988 206 61 26 chrX 32909192 32909683 -129690247 - Charlie4a DNA MER1_type 0 508 1 1638 196 109 34 chrX 32909741 32910210 -129689720 - MLT1D LTR MaLR 0 505 2 265 317 73 61 chrX 32910250 32910753 -129689177 - L2 LINE L2 -218 3054 2553 591 283 111 31 chrX 32911650 32911852 -129688078 - LTR16C LTR ERVL 0 491 268 2847 115 31 2 chrX 32911852 32912268 -129687662 - MSTA LTR MaLR 0 428 1 591 283 111 31 chrX 32912268 32912291 -129687639 - LTR16C LTR ERVL -223 268 248 * 2438 88 9 12 chrX 32912289 32912619 -129687311 + THE1C LTR MaLR 47 375 0 509 258 120 47 chrX 32912619 32912852 -129687078 - LTR16C LTR ERVL -241 250 1 191 377 33 25 chrX 32914871 32914993 -129684937 + L2 LINE L2 3150 3272 0 436 295 31 8 chrX 32915923 32916052 -129683878 + L2 LINE L2 3141 3272 0 361 289 75 40 chrX 32916429 32916575 -129683355 + LTR33 LTR ERVL 76 215 -306 2265 156 50 79 chrX 32916575 32916766 -129683164 + MLT1D LTR MaLR 1 196 -309 2083 139 0 0 chrX 32916766 32917068 -129682862 + AluSx SINE Alu 1 302 -10 2265 156 50 79 chrX 32917068 32917396 -129682534 + MLT1D LTR MaLR 196 505 0 361 289 75 40 chrX 32917396 32917628 -129682302 + LTR33 LTR ERVL 215 506 -15 613 306 69 51 chrX 32918162 32918554 -129681376 + LTR16C LTR ERVL 93 491 0 1155 188 103 19 chrX 32919082 32919425 -129680505 - MLT1E LTR MaLR -2 591 231 332 119 254 0 chrX 32919422 32919489 -129680441 - MLT1E LTR MaLR -570 84 1 * 1377 179 66 127 chrX 32920043 32920540 -129679390 - MLT1C LTR MaLR 0 467 1 259 292 62 103 chrX 32920843 32921134 -129678796 + L2 LINE L2 2990 3268 -4 577 294 42 49 chrX 32921608 32921876 -129678054 - MLT1H1 LTR MaLR -300 267 1 192 282 97 0 chrX 32921980 32922083 -129677847 + MIR SINE MIR 73 185 -77 667 249 37 32 chrX 32922842 32923031 -129676899 + MIR SINE MIR 73 262 0 870 202 46 63 chrX 32923266 32923398 -129676532 - MIR SINE MIR -1 261 133 1809 191 24 22 chrX 32923398 32923769 -129676161 - MLT1A2 LTR MaLR 0 374 3 870 202 46 63 chrX 32923769 32923874 -129676056 - MIR SINE MIR -129 133 28 1023 228 107 91 chrX 32923941 32924422 -129675508 - MLT1H LTR MaLR -1 548 36 238 185 56 0 chrX 32924497 32924551 -129675379 - MLT1K LTR MaLR -10 578 522 1649 177 16 26 chrX 32924558 32924863 -129675067 + AluJo SINE Alu 1 302 -10 573 279 172 17 chrX 32924983 32925216 -129674714 - MLT1K LTR MaLR -201 387 119 840 202 109 11 chrX 32925223 32925406 -129674524 + MER63A DNA MER1_type 9 209 -1 21 36 0 0 chrX 32925578 32925606 -129674324 + AT_rich Low_complexity Low_complexity 1 28 0 766 278 57 4 chrX 32925784 32926032 -129673898 - MIR SINE MIR 0 262 2 257 129 0 48 chrX 32927290 32927352 -129672578 + (T)n Simple_repeat Simple_repeat 1 59 0 261 180 0 0 chrX 32927673 32927723 -129672207 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 53 0 0 chrX 32928297 32928335 -129671595 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chrX 32928365 32928386 -129671544 + (TG)n Simple_repeat Simple_repeat 1 21 0 221 30 61 0 chrX 32928423 32928456 -129671474 + GA-rich Low_complexity Low_complexity 4 38 0 257 293 37 0 chrX 32929130 32929212 -129670718 - MIR SINE MIR -17 245 161 365 195 39 0 chrX 32929213 32929290 -129670640 - MER116 DNA Mariner 0 80 1 355 238 81 2 chrX 32929290 32929424 -129670506 - MIR SINE MIR -58 150 11 280 345 18 0 chrX 32929443 32929553 -129670377 - MIR SINE MIR -101 161 50 1495 280 67 11 chrX 32929876 32930341 -129669589 - LTR16C LTR ERVL 0 491 1 474 222 196 13 chrX 32931212 32931365 -129668565 + MER5A DNA MER1_type 9 189 0 623 267 10 90 chrX 32931830 32932118 -129667812 + MLT1H LTR MaLR 47 311 -238 284 271 33 25 chrX 32932287 32932409 -129667521 + MIR SINE MIR 111 233 -29 22 0 0 0 chrX 32932418 32932440 -129667490 + AT_rich Low_complexity Low_complexity 1 22 0 1066 259 128 34 chrX 32934948 32935053 -129664877 - MLT1H LTR MaLR 0 549 455 186 71 0 0 chrX 32935053 32935081 -129664849 + (GCTTG)n Simple_repeat Simple_repeat 1 28 0 1066 259 128 34 chrX 32935081 32935477 -129664453 - MLT1H LTR MaLR -94 455 1 249 139 0 0 chrX 32936888 32936931 -129662999 + (TG)n Simple_repeat Simple_repeat 2 44 0 834 269 10 0 chrX 32937467 32937668 -129662262 + MIR SINE MIR 12 214 -48 190 355 140 0 chrX 32937964 32938057 -129661873 - L2 LINE L2 -10 3303 3198 767 215 24 43 chrX 32938167 32938376 -129661554 - L1ME3A LINE L1 -1 6169 5965 1978 237 73 36 chrX 32939000 32939562 -129660368 - MLT1G LTR MaLR 0 590 8 865 254 12 4 chrX 32939571 32939811 -129660119 + MIR SINE MIR 10 251 -11 323 318 108 6 chrX 32940005 32940181 -129659749 - MIR SINE MIR -50 212 19 33 25 0 0 chrX 32940223 32940263 -129659667 + AT_rich Low_complexity Low_complexity 1 40 0 446 334 7 14 chrX 32940893 32941071 -129658859 + MIR3 SINE MIR 20 197 -11 190 348 0 52 chrX 32943341 32943456 -129656474 - MIR SINE MIR -57 151 43 375 327 80 15 chrX 32944193 32944392 -129655538 - L2 LINE L2 0 3272 3061 216 328 56 56 chrX 32944975 32945100 -129654830 + MER5A DNA MER1_type 26 150 -39 1220 224 0 0 chrX 32945314 32945537 -129654393 - MER58A DNA MER1_type 0 224 2 1077 202 5 5 chrX 32945657 32945845 -129654085 - MER5A DNA MER1_type -1 188 1 258 309 99 0 chrX 32946285 32946366 -129653564 + L2 LINE L2 3134 3222 -50 4038 149 66 13 chrX 32946512 32947228 -129652702 + L1MB7 LINE L1 5431 6184 0 817 52 17 0 chrX 32947362 32947477 -129652453 + (TA)n Simple_repeat Simple_repeat 1 117 0 2433 230 63 59 chrX 32949258 32950120 -129649810 - L1ME LINE L1 -5177 893 29 188 241 103 0 chrX 32950537 32950595 -129649335 - MIR SINE MIR -70 192 129 198 150 0 0 chrX 32950703 32950743 -129649187 + (TAA)n Simple_repeat Simple_repeat 2 41 0 276 206 31 194 chrX 32951539 32951637 -129648293 + MIR3 SINE MIR 61 125 -83 761 148 9 0 chrX 32951637 32951752 -129648178 + FLAM_A SINE Alu 1 116 -17 276 206 31 194 chrX 32951752 32951813 -129648117 + MIR3 SINE MIR 125 194 -14 204 179 0 0 chrX 32952638 32952677 -129647253 + GA-rich Low_complexity Low_complexity 2 40 0 314 258 180 16 chrX 32952838 32952964 -129646966 - LTR16C LTR ERVL -73 418 272 1254 216 133 38 chrX 32952964 32953386 -129646544 - MLT1C LTR MaLR 0 467 6 960 270 106 32 chrX 32954750 32955154 -129644776 - MLT1J1 LTR MaLR -11 435 2 825 265 121 30 chrX 32955233 32955454 -129644476 - MLT1H1 LTR MaLR -96 499 300 1469 172 45 26 chrX 32955454 32955562 -129644368 + AluJo SINE Alu 16 120 -192 273 57 0 0 chrX 32955562 32955597 -129644333 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1469 172 45 26 chrX 32955597 32955756 -129644174 + AluJo SINE Alu 120 288 -24 825 265 121 30 chrX 32955756 32955926 -129644004 - MLT1H1 LTR MaLR -295 300 60 2069 177 25 0 chrX 32955926 32956282 -129643648 - MLT1A1 LTR MaLR 0 365 1 825 265 121 30 chrX 32956282 32956314 -129643616 - MLT1H1 LTR MaLR -535 60 32 266 340 60 0 chrX 32956654 32956754 -129643176 + L2 LINE L2 3158 3263 -9 181 316 22 84 chrX 32956951 32957226 -129642704 + L2 LINE L2 73 330 -2984 342 268 108 77 chrX 32957615 32957809 -129642121 + L2 LINE L2 327 526 -2788 2092 188 23 21 chrX 32957860 32958248 -129641682 + MSTB LTR MaLR 38 426 0 1320 278 86 7 chrX 32958266 32958694 -129641236 - LTR16B LTR ERVL -2 462 1 2782 263 104 18 chrX 32958696 32959877 -129640053 + L2 LINE L2 570 1852 -1462 180 0 0 0 chrX 32960231 32960251 -129639679 + (A)n Simple_repeat Simple_repeat 1 20 0 240 351 0 22 chrX 32960888 32961049 -129638881 - MIR SINE MIR -72 190 37 216 0 0 0 chrX 32961866 32961890 -129638040 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chrX 32962396 32962417 -129637513 + AT_rich Low_complexity Low_complexity 1 21 0 864 328 40 9 chrX 32962659 32962985 -129636945 - LTR16C LTR ERVL 0 491 156 5736 123 72 2 chrX 32963203 32964688 -129635242 + L1PBa LINE L1 2056 3649 -3213 617 251 80 12 chrX 32964879 32965042 -129634888 + MER96 DNA MER1_type 2 175 0 368 291 84 63 chrX 32966285 32966498 -129633432 - L2 LINE L2 -471 2843 2623 2357 62 13 13 chrX 32966498 32966805 -129633125 + AluY SINE Alu 1 307 -4 368 291 84 63 chrX 32966805 32966828 -129633102 - L2 LINE L2 -691 2623 2602 182 256 58 35 chrX 32966965 32967051 -129632879 - L2 LINE L2 -919 2395 2308 455 250 0 0 chrX 32967054 32967142 -129632788 - MER81 DNA DNA -21 93 6 219 365 48 24 chrX 32968181 32968307 -129631623 + L2 LINE L2 3144 3272 0 7265 21 1 369 chrX 32968644 32970787 -129629143 + SVA Other Other 47 1409 0 13665 89 5 22 chrX 32970908 32972868 -129627062 - L1P3 LINE L1 -4498 1963 3 6106 111 13 9 chrX 32972869 32974707 -129625223 + L1PA15 LINE L1 4315 6161 -4 470 304 41 23 chrX 32974734 32975000 -129624930 - L1MC4 LINE L1 -223 7819 7549 385 293 60 0 chrX 32974971 32975087 -129624843 - L1MC4a LINE L1 -401 7407 7285 * 1285 275 118 51 chrX 32975094 32975884 -129624046 - L1MEd LINE L1 -4762 1548 615 207 0 0 0 chrX 32975884 32975907 -129624023 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1285 275 118 51 chrX 32975907 32976323 -129623607 - L1MEd LINE L1 -5695 615 228 307 327 32 32 chrX 32976502 32976658 -129623272 + L2 LINE L2 3117 3272 0 204 339 18 9 chrX 32977903 32978012 -129621918 + L2 LINE L2 3127 3236 -36 710 222 93 10 chrX 32978016 32978210 -129621720 + MIR SINE MIR 45 254 -8 267 152 0 0 chrX 32978527 32978573 -129621357 + (CA)n Simple_repeat Simple_repeat 1 46 0 598 337 73 25 chrX 32978884 32979240 -129620690 - LTR16C LTR ERVL 0 491 119 532 264 0 16 chrX 32980807 32980936 -129618994 + MIR SINE MIR 14 140 -122 789 267 43 18 chrX 32980942 32981288 -129618642 - LTR16A LTR ERVL 0 450 66 187 243 131 65 chrX 32981385 32981492 -129618438 + MIR SINE MIR 149 262 0 1568 164 16 32 chrX 32981764 32982075 -129617855 - MLT1B LTR MaLR 0 390 85 500 251 44 22 chrX 32982199 32982382 -129617548 - LTR16A1 LTR ERVL -89 368 182 1421 213 117 66 chrX 32983338 32983836 -129616094 - LTR33A LTR ERVL 0 523 1 1398 212 19 35 chrX 32983906 32984222 -129615708 + MLT1A1 LTR MaLR 55 365 0 558 249 174 9 chrX 32985090 32985303 -129614627 - MIR SINE MIR -3 259 12 510 250 153 51 chrX 32986093 32986309 -129613621 + MLT1L LTR MaLR 6 243 -372 381 315 102 36 chrX 32986497 32986881 -129613049 + L2 LINE L2 2349 2757 -557 275 236 47 28 chrX 32987418 32987524 -129612406 - L1MC5 LINE L1 -48 7913 7806 629 270 91 25 chrX 32987549 32987953 -129611977 + LTR33 LTR ERVL 2 482 -39 5873 222 19 16 chrX 32988015 32989716 -129610214 + L1PA15-16 LINE L1 1901 3607 -3242 1296 165 0 5 chrX 32989719 32989943 -129609987 + L1PA15-16 LINE L1 4812 5034 -1815 25022 87 19 9 chrX 32989957 32994285 -129605645 - L1PA7 LINE L1 -2 6152 1784 4336 155 119 39 chrX 32994285 32995263 -129604667 + pTR5 LTR ERV1 741 2021 -417 389 238 10 0 chrX 32995264 32995365 -129604565 + LTR30 LTR ERV1 541 642 -80 2453 86 0 0 chrX 32995365 32995692 -129604238 + pTR5 LTR ERV1 66 392 -2046 2144 36 0 25 chrX 32995707 32995983 -129603947 + SVA Other Other 1 269 -1117 603 192 154 0 chrX 32996468 32996624 -129603306 - MER5A DNA MER1_type -6 183 4 244 280 38 19 chrX 32997950 32998107 -129601823 + (TCCA)n Simple_repeat Simple_repeat 1 160 0 408 285 24 24 chrX 32998137 32998302 -129601628 + (TCCA)n Simple_repeat Simple_repeat 3 167 0 227 380 108 24 chrX 32998638 32998925 -129601005 - L2 LINE L2 -449 2865 2555 1286 196 30 23 chrX 32999328 32999647 -129600283 - L1MD3 LINE L1 -10 7985 7609 1229 210 122 30 chrX 32999758 33000271 -129599659 - MLT1G LTR MaLR 0 590 7 658 260 70 29 chrX 33000543 33000785 -129599145 + MIR SINE MIR 6 257 -5 1615 183 97 30 chrX 33001596 33001967 -129597963 - MSTD LTR MaLR 0 396 1 201 129 0 0 chrX 33001993 33002024 -129597906 + (CA)n Simple_repeat Simple_repeat 2 32 0 522 264 68 36 chrX 33002561 33002811 -129597119 - MIR SINE MIR 0 262 5 826 305 123 32 chrX 33002811 33003503 -129596427 - L1ME4a LINE L1 -46 6075 5321 424 322 145 8 chrX 33004189 33004568 -129595362 + L2 LINE L2 1930 2360 -954 202 235 20 0 chrX 33005653 33005704 -129594226 - L2 LINE L2 -19 3294 3243 981 293 51 39 chrX 33005704 33006138 -129593792 - LTR16C LTR ERVL 0 491 53 271 148 93 0 chrX 33006806 33006860 -129593070 - LTR33 LTR ERVL -5 516 458 * 911 244 34 38 chrX 33006841 33007132 -129592798 - LTR33 LTR ERVL -182 339 50 2422 147 36 19 chrX 33007132 33007553 -129592377 + MSTA LTR MaLR 1 428 0 2194 127 0 0 chrX 33007598 33007921 -129592009 + MSTA-int LTR MaLR 31 353 -1298 2206 152 6 15 chrX 33007921 33008256 -129591674 + MER1B DNA MER1_type 1 332 -7 7001 182 45 6 chrX 33008256 33009492 -129590438 + MSTA-int LTR MaLR 353 1637 -14 2689 137 31 5 chrX 33009506 33009923 -129590007 + MSTA LTR MaLR 1 428 0 1809 189 122 12 chrX 33010567 33010984 -129588946 - MLT1C LTR MaLR -2 465 3 830 266 92 17 chrX 33011293 33011586 -129588344 - LTR16C LTR ERVL 0 491 177 300 311 59 7 chrX 33011714 33011849 -129588081 - MIR SINE MIR -72 190 49 893 257 55 55 chrX 33012849 33013234 -129586696 - L2 LINE L2 0 3313 2929 301 301 15 45 chrX 33013579 33013712 -129586218 + MIR SINE MIR 28 156 -106 1320 267 88 32 chrX 33013932 33014397 -129585533 - LTR16C LTR ERVL 0 491 1 183 42 0 0 chrX 33015809 33015833 -129584097 + (ATG)n Simple_repeat Simple_repeat 1 24 0 203 222 0 22 chrX 33016903 33016948 -129582982 + MER91 DNA MER1_type 95 138 -2 181 228 70 35 chrX 33017645 33017675 -129582255 + L2 LINE L2 3255 3282 -31 777 129 30 23 chrX 33017675 33017807 -129582123 - FLAM_C SINE Alu 0 133 1 181 228 70 35 chrX 33017807 33017833 -129582097 + L2 LINE L2 3282 3313 0 1095 267 77 18 chrX 33018458 33018859 -129581071 + L1ME3A LINE L1 5657 6081 -89 301 202 24 32 chrX 33019849 33020076 -129579854 + GA-rich Low_complexity Low_complexity 1 225 0 272 244 67 111 chrX 33020681 33020816 -129579114 - MLT1J1 LTR MaLR -57 389 261 254 302 21 21 chrX 33020818 33020914 -129579016 - MER5B DNA MER1_type -78 100 5 1984 170 41 0 chrX 33021033 33021374 -129578556 + MER47A DNA MER2_type 12 366 0 804 249 6 0 chrX 33021374 33021542 -129578388 - MLT1J2 LTR MaLR -274 176 8 2922 52 14 0 chrX 33021944 33022306 -129577624 + L1PA6 LINE L1 5784 6150 -4 297 237 51 34 chrX 33022451 33022569 -129577361 + MER94 DNA DNA 15 134 0 647 247 239 19 chrX 33023700 33023854 -129576076 + MLT1H LTR MaLR 95 214 -335 1460 169 141 44 chrX 33023854 33024215 -129575715 - MSTD LTR MaLR 0 396 1 647 247 239 19 chrX 33024215 33024433 -129575497 + MLT1H LTR MaLR 214 549 0 276 347 10 0 chrX 33024433 33024531 -129575399 - MIR SINE MIR -80 128 30 318 278 30 53 chrX 33025455 33025588 -129574342 + L2 LINE L2 3143 3272 0 843 254 130 56 chrX 33026219 33026597 -129573333 - LTR16C LTR ERVL -6 485 80 814 271 21 106 chrX 33027271 33027743 -129572187 - MLT1J1 LTR MaLR 0 446 15 249 267 213 40 chrX 33028122 33028272 -129571658 + MLT1H LTR MaLR 69 244 -311 414 193 144 20 chrX 33028355 33028518 -129571412 + MLT1H LTR MaLR 368 544 -5 194 342 77 43 chrX 33028739 33028856 -129571074 + L2 LINE L2 3152 3272 0 4821 127 14 9 chrX 33029078 33029859 -129570071 + L1MA6 LINE L1 5512 6296 -4 540 317 92 8 chrX 33030663 33030903 -129569027 + MIR SINE MIR 1 260 -2 37 62 0 0 chrX 33031007 33031072 -129568858 + AT_rich Low_complexity Low_complexity 1 65 0 832 262 35 4 chrX 33031120 33031349 -129568581 - MIR SINE MIR -15 247 12 1077 273 51 96 chrX 33032207 33032833 -129567097 - MLT1L LTR MaLR 0 615 18 207 273 182 0 chrX 33032847 33032935 -129566995 - MIR SINE MIR -118 144 41 244 98 0 39 chrX 33033798 33033849 -129566081 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 474 260 66 51 chrX 33033911 33034107 -129565823 + MLT1J LTR MaLR 3 201 -310 369 276 0 0 chrX 33034151 33034238 -129565692 + LTR16A LTR ERVL 364 450 0 252 319 78 42 chrX 33034331 33034497 -129565433 + MLT1L LTR MaLR 371 542 -73 574 257 36 61 chrX 33034624 33034904 -129565026 - L2 LINE L2 -10 3303 3031 893 280 68 34 chrX 33035156 33035538 -129564392 - L2 LINE L2 -621 2693 2299 1770 237 84 9 chrX 33035545 33035975 -129563955 + LTR16B LTR ERVL 1 462 -2 503 250 127 48 chrX 33036001 33036220 -129563710 - L2 LINE L2 -1050 2264 2009 1589 175 7 34 chrX 33036220 33036517 -129563413 + AluJo SINE Alu 1 289 -23 503 250 127 48 chrX 33036517 33036629 -129563301 - L2 LINE L2 -1305 2009 1907 261 355 73 8 chrX 33036641 33036900 -129563030 - L2 LINE L2 -1838 1476 1201 1764 194 93 11 chrX 33037375 33037740 -129562190 + MLT2D LTR ERVL 1 395 -19 285 139 0 0 chrX 33037779 33037822 -129562108 + MLT2D LTR ERVL 348 390 -7 1985 141 82 70 chrX 33037848 33038275 -129561655 - MSTB1 LTR MaLR 0 432 1 432 208 0 0 chrX 33038380 33038481 -129561449 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 242 320 221 0 chrX 33038502 33038624 -129561306 + MIR SINE MIR 6 154 -108 275 238 38 25 chrX 33038696 33038776 -129561154 + L3 LINE CR1 968 1048 -529 283 173 40 53 chrX 33039105 33039180 -129560750 - MLT1K LTR MaLR -158 430 357 23 33 0 0 chrX 33040355 33040385 -129559545 + AT_rich Low_complexity Low_complexity 1 30 0 1065 275 152 24 chrX 33040897 33041438 -129558492 - MLT1L LTR MaLR -5 610 1 209 351 46 23 chrX 33042301 33042432 -129557498 + L2 LINE L2 3137 3270 -2 602 155 9 0 chrX 33042939 33043055 -129556875 + CT-rich Low_complexity Low_complexity 2 118 0 1066 224 8 13 chrX 33043666 33043903 -129556027 - MIR SINE MIR -25 237 2 3873 141 6 6 chrX 33044051 33044681 -129555249 - L1MA5 LINE L1 -2 6298 5669 633 76 0 0 chrX 33044681 33044760 -129555170 + L1M2 LINE L1 5659 5737 -563 1148 255 23 7 chrX 33044782 33045084 -129554846 + LTR16C LTR ERVL 185 491 0 350 315 26 9 chrX 33045110 33045274 -129554656 - MIR SINE MIR -51 157 33 309 181 32 0 chrX 33045503 33045597 -129554333 + (TA)n Simple_repeat Simple_repeat 1 97 0 205 156 0 0 chrX 33045616 33045648 -129554282 + (TG)n Simple_repeat Simple_repeat 2 33 0 435 253 58 49 chrX 33045740 33045969 -129553961 + MLT1H LTR MaLR 44 304 -245 276 200 110 50 chrX 33045998 33046098 -129553832 + MLT1I LTR MaLR 281 386 -23 23 0 0 0 chrX 33046168 33046191 -129553739 + AT_rich Low_complexity Low_complexity 1 23 0 454 252 84 0 chrX 33046339 33046458 -129553472 - MER94 DNA DNA 0 134 6 234 375 130 3 chrX 33046739 33047040 -129552890 - L2 LINE L2 -511 2803 2465 757 280 44 30 chrX 33047285 33047613 -129552317 + LTR16C LTR ERVL 90 491 0 962 215 13 35 chrX 33047613 33047841 -129552089 + MIR SINE MIR 14 236 -26 553 252 92 11 chrX 33047989 33048234 -129551696 - LTR33A LTR ERVL -14 509 327 399 289 70 40 chrX 33048258 33048459 -129551471 - LTR50 LTR ERVL -569 226 20 417 306 96 0 chrX 33049220 33049377 -129550553 - MIR SINE MIR -71 191 20 11969 180 85 8 chrX 33049821 33053777 -129546153 + L1PBa LINE L1 6 4265 -2597 1208 243 47 137 chrX 33103780 33104668 -129495262 - L1PBb LINE L1 -4967 1236 371 6970 100 8 31 chrX 33105068 33106151 -129493779 + L1P LINE L1 864 1921 -4225 1625 345 26 17 chrX 33106252 33107015 -129492915 - HERV16 LTR ERVL -3429 1567 798 866 161 7 7 chrX 33107025 33107180 -129492750 - LTR32 LTR ERVL 0 471 317 535 210 0 0 chrX 33107232 33107332 -129492598 - LTR32 LTR ERVL -119 352 253 32 0 0 0 chrX 33108223 33108255 -129491675 + AT_rich Low_complexity Low_complexity 1 32 0 2433 61 0 19 chrX 33108281 33108591 -129491339 - AluY SINE Alu -7 304 1 299 330 44 16 chrX 33109371 33109553 -129490377 + MIR SINE MIR 32 218 -44 248 306 12 0 chrX 33110049 33110134 -129489796 - MER94 DNA DNA -10 124 39 291 28 0 0 chrX 33110477 33110513 -129489417 + (CA)n Simple_repeat Simple_repeat 2 37 0 382 228 40 79 chrX 33110835 33111037 -129488893 + MIR SINE MIR 66 259 -3 244 186 68 17 chrX 33111115 33111174 -129488756 + MIR SINE MIR 72 133 -75 * 512 186 0 93 chrX 33111168 33111297 -129488633 - L2 LINE L2 0 3313 3197 256 272 222 0 chrX 33112152 33112233 -129487697 - L2 LINE L2 -22 3250 3152 2099 153 6 8 chrX 33112807 33113172 -129486758 - L1MA3 LINE L1 0 6305 5942 255 182 0 0 chrX 33113352 33113396 -129486534 + LTR16C LTR ERVL 448 491 0 541 264 104 2 chrX 33114615 33114796 -129485134 + MIR SINE MIR 3 197 -65 195 279 29 0 chrX 33114907 33114975 -129484955 - L2 LINE L2 -208 3064 2995 2278 196 72 52 chrX 33115011 33115597 -129484333 + MLT1G LTR MaLR 13 576 -19 2820 71 3 0 chrX 33115915 33116269 -129483661 + THE1A LTR MaLR 1 355 0 6377 116 60 1 chrX 33116269 33117182 -129482748 + THE1A-int LTR MaLR 1 967 -613 350 232 49 63 chrX 33118123 33118265 -129481665 - MIR3 SINE MIR -34 174 35 2083 177 14 3 chrX 33118911 33119272 -129480658 + MLT1A1 LTR MaLR 1 365 0 250 259 62 37 chrX 33119280 33119361 -129480569 - MIR SINE MIR -167 95 13 258 371 57 28 chrX 33119506 33119754 -129480176 - L2 LINE L2 -337 2977 2723 1293 83 10 21 chrX 33119773 33119965 -129479965 + L1PA14 LINE L1 5963 6152 -9 21 0 0 0 chrX 33119977 33119998 -129479932 + AT_rich Low_complexity Low_complexity 1 21 0 323 232 27 54 chrX 33120099 33120148 -129479782 + L2 LINE L2 3172 3221 -92 2542 118 83 5 chrX 33120148 33120545 -129479385 + MSTA LTR MaLR 1 428 0 323 232 27 54 chrX 33120545 33120607 -129479323 + L2 LINE L2 3221 3280 -33 4593 97 6 13 chrX 33120817 33121448 -129478482 + THE1A-int LTR MaLR 954 1580 0 2623 104 3 3 chrX 33121448 33121803 -129478127 + THE1A LTR MaLR 1 355 0 358 257 46 9 chrX 33121896 33122005 -129477925 + MIR SINE MIR 35 147 -115 2199 126 39 39 chrX 33122415 33122779 -129477151 + THE1B LTR MaLR 1 364 0 406 257 52 22 chrX 33122843 33122979 -129476951 + MER5A DNA MER1_type 1 140 -49 242 235 0 0 chrX 33123107 33123158 -129476772 - LTR33 LTR ERVL 0 521 471 332 140 149 56 chrX 33123817 33123924 -129476006 + L2 LINE L2 3196 3312 -1 2031 112 0 18 chrX 33125964 33126250 -129473680 - AluSx SINE Alu -17 295 15 233 188 0 87 chrX 33126255 33126324 -129473606 - MER5A DNA MER1_type -118 71 9 860 198 0 22 chrX 33126366 33126548 -129473382 + MER5B DNA MER1_type 1 178 0 320 266 184 6 chrX 33126914 33127072 -129472858 - Charlie8 DNA MER1_type -1926 491 306 553 160 9 178 chrX 33127074 33127287 -129472643 - MER69A DNA AcHobo 0 177 1 426 241 0 27 chrX 33127498 33127610 -129472320 + MER5A DNA MER1_type 4 112 -77 223 250 0 0 chrX 33127708 33127760 -129472170 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 217 315 0 22 chrX 33128231 33128320 -129471610 + MIR SINE MIR 16 102 -160 302 308 9 0 chrX 33129378 33129485 -129470445 - MIR3 SINE MIR -32 176 69 231 146 42 42 chrX 33129786 33129834 -129470096 + MER34 LTR ERV1 1 48 -494 617 299 58 18 chrX 33130751 33131025 -129468905 + L3 LINE CR1 1281 1565 -12 323 162 162 27 chrX 33131838 33131912 -129468018 + MLT1C LTR MaLR 6 89 -378 1862 233 32 21 chrX 33131923 33132360 -129467570 - MER70B LTR ERVL -133 445 4 1684 194 65 19 chrX 33132365 33132732 -129467198 + MLT1C LTR MaLR 84 467 0 724 242 138 76 chrX 33133108 33133579 -129466351 + Charlie8 DNA MER1_type 43 542 -1875 464 252 42 125 chrX 33135446 33135797 -129464133 + MLT1I LTR MaLR 98 386 -23 1093 177 0 16 chrX 33135931 33136123 -129463807 + MER5A DNA MER1_type 1 189 0 909 187 12 6 chrX 33136309 33136480 -129463450 + MER5B DNA MER1_type 1 172 -6 255 262 0 0 chrX 33136714 33136775 -129463155 - L2 LINE L2 -2 3270 3210 380 264 39 60 chrX 33136916 33137098 -129462832 - MLT1K LTR MaLR -28 560 383 2059 145 112 25 chrX 33137385 33137777 -129462153 - MSTA LTR MaLR 0 428 3 293 231 26 0 chrX 33138406 33138484 -129461446 + L1ME4a LINE L1 5962 6041 -80 1530 273 54 30 chrX 33138485 33139248 -129460682 - L2 LINE L2 -2 3311 2531 2355 93 86 67 chrX 33139355 33139729 -129460201 + MSTA LTR MaLR 1 366 -62 191 61 30 0 chrX 33139729 33139762 -129460168 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2021 112 4 4 chrX 33139765 33140042 -129459888 - AluSc SINE Alu -32 277 1 2355 93 86 67 chrX 33140042 33140083 -129459847 + MSTA LTR MaLR 367 428 0 955 229 0 14 chrX 33140622 33140832 -129459098 - MER3 DNA MER1_type -2 207 1 202 325 150 45 chrX 33140962 33141208 -129458722 + L2 LINE L2 2993 3264 -8 286 294 25 21 chrX 33141394 33141507 -129458423 + MIR SINE MIR 45 156 -58 259 356 0 0 chrX 33143886 33143973 -129455957 - L2 LINE L2 -13 3259 3173 1484 237 20 12 chrX 33143994 33144340 -129455590 + MLT1J LTR MaLR 1 349 -162 2233 188 114 2 chrX 33144346 33144883 -129455047 + L1ME2 LINE L1 5553 6149 -15 282 258 106 23 chrX 33144916 33145048 -129454882 + MLT1J LTR MaLR 353 495 -16 1021 254 21 4 chrX 33146107 33146343 -129453587 - MIR SINE MIR -5 257 18 2050 132 39 0 chrX 33146430 33146710 -129453220 - AluSx SINE Alu -21 291 1 250 287 57 57 chrX 33148070 33148192 -129451738 - MIR SINE MIR -49 213 92 379 336 229 9 chrX 33148683 33149469 -129450461 - L2 LINE L2 -562 2752 1794 986 192 6 28 chrX 33149483 33149665 -129450265 + MER5A DNA MER1_type 12 189 0 1531 246 121 31 chrX 33150139 33150683 -129449247 - MLT1G1 LTR MaLR -2 593 1 218 133 0 22 chrX 33151466 33151511 -129448419 + (TTCTCC)n Simple_repeat Simple_repeat 2 45 0 196 333 90 0 chrX 33152220 33152331 -129447599 + L2 LINE L2 3142 3262 -10 3100 173 23 5 chrX 33152334 33152906 -129447024 + L1MB5 LINE L1 5591 6172 -2 255 237 204 0 chrX 33152974 33153067 -129446863 - MER81 DNA DNA -1 113 2 185 186 116 0 chrX 33153187 33153230 -129446700 - MIR SINE MIR 0 262 215 343 236 112 0 chrX 33153292 33153381 -129446549 - MER5A DNA MER1_type -87 102 4 * 858 210 16 27 chrX 33153381 33153565 -129446365 - MIR SINE MIR -43 219 38 236 189 75 0 chrX 33154103 33154156 -129445774 + MIR SINE MIR 108 164 -98 1825 174 0 29 chrX 33155606 33155916 -129444014 - AluJo SINE Alu -7 305 5 285 75 0 0 chrX 33155980 33156020 -129443910 + (CA)n Simple_repeat Simple_repeat 1 40 0 858 249 48 12 chrX 33156743 33156992 -129442938 + MIR SINE MIR 4 261 -1 618 297 25 127 chrX 33157095 33157553 -129442377 + L3 LINE CR1 159 545 -1032 846 252 133 42 chrX 33157553 33157958 -129441972 - MLT1J1 LTR MaLR 0 446 5 618 297 25 127 chrX 33157958 33158091 -129441839 + L3 LINE CR1 545 690 -887 367 302 12 41 chrX 33158552 33158724 -129441206 + L3 LINE CR1 674 840 -737 665 253 22 0 chrX 33158755 33158937 -129440993 - LTR33 LTR ERVL -4 517 332 257 315 15 46 chrX 33159108 33159238 -129440692 + L3 LINE CR1 1143 1268 -309 323 310 133 19 chrX 33159344 33159502 -129440428 + L2 LINE L2 3096 3271 -1 205 259 17 17 chrX 33159609 33159667 -129440263 + MIR SINE MIR 79 136 -126 275 282 168 0 chrX 33159792 33159941 -129439989 - LTR16C LTR ERVL 0 491 318 1579 122 79 33 chrX 33160780 33161147 -129438783 + MSTB LTR MaLR 1 425 -1 1970 195 21 21 chrX 33161296 33161670 -129438260 + MLT1A2 LTR MaLR 1 374 0 240 184 0 0 chrX 33161877 33161915 -129438015 + MIR SINE MIR 204 241 -21 454 344 63 60 chrX 33162054 33162339 -129437591 - L2 LINE L2 -2 3270 2985 571 216 9 0 chrX 33162367 33162478 -129437452 - MER5A DNA MER1_type -77 112 1 365 326 119 37 chrX 33162483 33162811 -129437119 - L2 LINE L2 -337 2977 2623 923 215 61 16 chrX 33163238 33163485 -129436445 + MIR SINE MIR 4 261 -1 604 246 10 68 chrX 33163936 33164143 -129435787 + LTR16A1 LTR ERVL 251 445 -12 343 158 34 57 chrX 33164651 33164828 -129435102 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 * 359 227 12 12 chrX 33164798 33164970 -129434960 + GA-rich Low_complexity Low_complexity 1 172 0 192 213 0 0 chrX 33165005 33165066 -129434864 + GA-rich Low_complexity Low_complexity 2 62 0 826 232 109 25 chrX 33166580 33167066 -129432864 + MLT1G1 LTR MaLR 1 567 0 2010 124 0 4 chrX 33167105 33167371 -129432559 + AluSx SINE Alu 33 297 -15 245 252 14 28 chrX 33167527 33167670 -129432260 + CT-rich Low_complexity Low_complexity 3 143 0 434 215 11 28 chrX 33167702 33167879 -129432051 + CT-rich Low_complexity Low_complexity 4 177 0 531 195 0 53 chrX 33167892 33168082 -129431848 + CT-rich Low_complexity Low_complexity 1 180 0 373 241 103 42 chrX 33168587 33168755 -129431175 - MLT1G LTR MaLR -6 617 403 895 241 17 69 chrX 33168881 33169229 -129430701 - MLT1G LTR MaLR -260 330 1 615 291 37 0 chrX 33169464 33169653 -129430277 + Charlie8 DNA MER1_type 76 271 -2146 230 262 12 0 chrX 33169940 33170024 -129429906 + CT-rich Low_complexity Low_complexity 2 86 0 250 26 51 0 chrX 33170581 33170620 -129429310 + (TC)n Simple_repeat Simple_repeat 2 42 0 466 345 6 0 chrX 33171343 33171520 -129428410 + (TG)n Simple_repeat Simple_repeat 2 179 0 389 272 16 40 chrX 33172030 33172155 -129427775 + MIR SINE MIR 87 208 -54 220 217 0 0 chrX 33172627 33172673 -129427257 + MIR SINE MIR 150 195 -67 843 255 74 0 chrX 33173391 33173622 -129426308 + MIR SINE MIR 8 255 -7 6434 127 31 14 chrX 33173885 33174861 -129425069 - L1MA9 LINE L1 0 6312 5285 2482 83 0 0 chrX 33174861 33175163 -129424767 - AluSx SINE Alu -10 302 1 6434 127 31 14 chrX 33175163 33175584 -129424346 - L1MA9 LINE L1 -1027 5285 4873 214 297 0 27 chrX 33175591 33175665 -129424265 + L2 LINE L2 2914 2985 -287 802 279 14 70 chrX 33175683 33176096 -129423834 + LTR16B LTR ERVL 1 390 -74 255 280 67 150 chrX 33176151 33176451 -129423479 + L2 LINE L2 2998 3272 0 863 19 0 9 chrX 33178132 33178238 -129421692 + (CTATT)n Simple_repeat Simple_repeat 4 108 0 284 345 111 18 chrX 33179096 33179262 -129420668 - LTR67 LTR ERVL -267 290 109 1055 242 67 25 chrX 33179262 33179547 -129420383 - LTR16C LTR ERVL 0 491 195 303 49 0 0 chrX 33180241 33180282 -129419648 + (T)n Simple_repeat Simple_repeat 1 41 0 1307 255 18 12 chrX 33180438 33180775 -129419155 - LTR16A LTR ERVL -96 354 16 474 285 45 6 chrX 33180914 33181085 -129418845 - MIR SINE MIR -62 146 4 680 234 66 18 chrX 33181085 33181252 -129418678 - MER96 DNA MER1_type 0 175 1 642 294 41 32 chrX 33182653 33182997 -129416933 - MLT1I LTR MaLR 0 450 59 398 271 32 48 chrX 33183414 33183602 -129416328 + MLT1J2 LTR MaLR 266 450 0 206 69 0 0 chrX 33183604 33183633 -129416297 + L2 LINE L2 3243 3271 -1 814 128 88 20 chrX 33184613 33184761 -129415169 + MER6B DNA MER2_type 3 160 -50 1543 209 0 6 chrX 33184848 33185159 -129414771 + AluJb SINE Alu 1 309 -3 2112 123 0 0 chrX 33185324 33185624 -129414306 + AluSx SINE Alu 2 301 -11 787 302 38 38 chrX 33186169 33186537 -129413393 - LTR16A LTR ERVL -82 368 1 326 283 116 17 chrX 33186736 33186909 -129413021 - L2 LINE L2 -4 3309 3120 672 313 83 0 chrX 33186972 33187202 -129412728 - MIR SINE MIR -13 249 1 1581 187 79 97 chrX 33187426 33187490 -129412440 - LTR16C LTR ERVL -34 457 393 2192 96 3 0 chrX 33187490 33187781 -129412149 - AluSc SINE Alu -17 292 1 1581 187 79 97 chrX 33187781 33188171 -129411759 - LTR16C LTR ERVL -98 393 11 1397 168 9 8 chrX 33188237 33188684 -129411246 + MLT1D LTR MaLR 1 505 0 276 286 0 0 chrX 33189301 33189364 -129410566 + MIR SINE MIR 68 130 -78 535 285 26 36 chrX 33191166 33191359 -129408571 + MLT1H LTR MaLR 346 536 -13 560 282 92 23 chrX 33191646 33191820 -129408110 - MIR3 SINE MIR -3 205 20 391 286 8 8 chrX 33191854 33191973 -129407957 + MER117 DNA MER1_type 39 157 -40 229 261 23 80 chrX 33192575 33192663 -129407267 + L2 LINE L2 2995 3077 -195 1028 218 61 19 chrX 33192695 33193007 -129406923 - HsTC2 DNA Tc2 -3 1895 1571 220 395 19 6 chrX 33193395 33193557 -129406373 - L2 LINE L2 -527 2787 2624 1661 171 17 10 chrX 33193567 33193866 -129406064 + AluJo SINE Alu 1 301 -11 247 242 48 16 chrX 33194586 33194648 -129405282 - MLT1J LTR MaLR -211 300 237 689 327 46 31 chrX 33194663 33195051 -129404879 - LTR16C LTR ERVL -2 489 96 297 254 47 89 chrX 33195330 33195499 -129404431 - MIR3 SINE MIR -4 204 43 307 267 85 22 chrX 33196716 33196876 -129403054 + MIR SINE MIR 3 178 -63 472 296 34 28 chrX 33197261 33197437 -129402493 - MIR SINE MIR -79 183 7 353 218 56 84 chrX 33197564 33197706 -129402224 - MLT1H LTR MaLR -2 547 410 322 235 54 27 chrX 33197802 33197939 -129401991 - MLT1I LTR MaLR -267 142 79 269 252 147 28 chrX 33198101 33198242 -129401688 - MER2 DNA MER2_type -3 342 185 1287 131 19 0 chrX 33198242 33198448 -129401482 + MER2 DNA MER2_type 1 210 -135 345 310 205 0 chrX 33198986 33199157 -129400773 + MIR SINE MIR 38 243 -19 772 117 39 126 chrX 33199647 33199853 -129400077 - MER53 DNA DNA -1 188 1 1107 253 65 30 chrX 33199934 33200163 -129399767 - LTR16C LTR ERVL -39 452 204 1669 212 16 26 chrX 33200163 33200541 -129399389 - MLT1A2 LTR MaLR 0 374 1 1107 253 65 30 chrX 33200541 33200678 -129399252 - LTR16C LTR ERVL -287 204 73 262 165 33 22 chrX 33200975 33201066 -129398864 + GA-rich Low_complexity Low_complexity 2 93 0 1139 262 104 116 chrX 33201119 33201683 -129398247 - L2 LINE L2 -2 3311 2742 665 147 9 17 chrX 33201683 33201799 -129398131 + FLAM_A SINE Alu 10 124 -18 1139 262 104 116 chrX 33201799 33202424 -129397506 - L2 LINE L2 -571 2742 2001 3346 56 9 25 chrX 33202429 33202499 -129397431 + L1PA5 LINE L1 5717 5787 -367 2342 91 0 0 chrX 33202499 33202807 -129397123 + AluY SINE Alu 1 308 -3 3346 56 9 25 chrX 33202807 33203179 -129396751 + L1PA5 LINE L1 5787 6152 -2 378 91 0 0 chrX 33203859 33203914 -129396016 + (CA)n Simple_repeat Simple_repeat 1 55 0 198 103 0 0 chrX 33203915 33203944 -129395986 + (CACCAT)n Simple_repeat Simple_repeat 3 31 0 227 348 52 9 chrX 33204562 33204677 -129395253 + MIR SINE MIR 17 136 -72 1061 219 40 28 chrX 33204727 33204974 -129394956 + MIR SINE MIR 2 251 -11 317 169 34 17 chrX 33205014 33205073 -129394857 - MLT1C LTR MaLR 0 467 408 195 42 0 0 chrX 33205224 33205248 -129394682 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 262 326 78 85 chrX 33205272 33205446 -129394484 - L2 LINE L2 -50 3222 3049 1607 219 105 44 chrX 33205446 33205922 -129394008 + MLT1J LTR MaLR 5 509 -2 262 326 78 85 chrX 33205922 33206054 -129393876 - L2 LINE L2 -223 3049 2918 200 270 0 10 chrX 33206171 33206271 -129393659 + CT-rich Low_complexity Low_complexity 4 102 0 363 167 322 0 chrX 33206298 33206388 -129393542 - L2 LINE L2 -15 3298 3180 374 358 80 7 chrX 33206438 33206726 -129393204 + LTR16A LTR ERVL 1 309 -141 489 319 178 32 chrX 33206736 33207377 -129392553 - L2 LINE L2 -320 2952 2196 1753 173 13 0 chrX 33207479 33207786 -129392144 - AluJo SINE Alu -1 311 1 204 244 0 0 chrX 33208114 33208155 -129391775 + L2 LINE L2 3230 3270 -2 242 333 12 12 chrX 33208198 33208279 -129391651 - L3b LINE CR1 -246 1337 1257 189 286 0 0 chrX 33208513 33208562 -129391368 - L3b LINE CR1 -375 1208 1160 273 268 170 60 chrX 33210249 33210484 -129389446 + L2 LINE L2 2456 2716 -598 252 222 74 44 chrX 33210489 33210624 -129389306 + L2 LINE L2 2817 2955 -317 253 191 48 32 chrX 33210669 33210732 -129389198 + MLT1H LTR MaLR 469 532 -17 1196 330 65 14 chrX 33210760 33211279 -129388651 + MLT1K LTR MaLR 43 588 0 259 336 64 7 chrX 33211886 33212026 -129387904 + MARNA DNA Mariner 29 176 -410 271 220 66 110 chrX 33212618 33212800 -129387130 + MER3 DNA MER1_type 36 209 0 * 1108 168 0 39 chrX 33212800 33212847 -129387083 - MER3 DNA MER1_type -170 39 1 447 258 63 38 chrX 33212862 33213021 -129386909 + MIR SINE MIR 57 219 -43 1868 249 111 11 chrX 33213625 33214166 -129385764 + MLT1G1 LTR MaLR 1 595 0 2187 106 3 0 chrX 33214435 33214737 -129385193 + AluSx SINE Alu 3 305 -7 494 181 138 0 chrX 33215818 33215912 -129384018 - LTR16C LTR ERVL 0 491 385 1846 157 39 137 chrX 33215914 33216390 -129383540 - MLT2D LTR ERVL -2 513 1 1388 294 23 13 chrX 33216390 33216774 -129383156 - LTR16C LTR ERVL -102 389 2 592 270 70 97 chrX 33217078 33217575 -129382355 + MLT1J LTR MaLR 25 508 -3 327 242 174 8 chrX 33217617 33217749 -129382181 + L2 LINE L2 3160 3313 0 566 255 87 3 chrX 33217873 33218055 -129381875 + MIR SINE MIR 2 203 -59 601 330 29 43 chrX 33218327 33218770 -129381160 + L1ME2 LINE L1 5448 5884 -280 224 204 0 74 chrX 33219089 33219143 -129380787 + L2 LINE L2 3263 3312 -1 1759 181 143 10 chrX 33219263 33219677 -129380253 + Charlie4a DNA MER1_type 39 507 -1 248 279 15 0 chrX 33219856 33219924 -129380006 + A-rich Low_complexity Low_complexity 2 70 0 1633 255 59 25 chrX 33220354 33220825 -129379105 - LTR16C LTR ERVL -3 488 2 410 314 63 11 chrX 33220925 33221100 -129378830 + Charlie8 DNA MER1_type 1 184 -2233 1099 228 16 20 chrX 33222177 33222427 -129377503 + MIR SINE MIR 14 262 0 757 298 18 6 chrX 33223695 33223938 -129375992 + MIR SINE MIR 17 262 0 231 170 0 0 chrX 33224087 33224134 -129375796 + (CA)n Simple_repeat Simple_repeat 1 47 0 310 215 15 0 chrX 33224942 33225007 -129374923 - L2 LINE L2 -1 3312 3247 779 278 71 40 chrX 33225081 33225531 -129374399 + LTR16B LTR ERVL 1 464 0 203 240 80 27 chrX 33225821 33225896 -129374034 - MIR SINE MIR -1 261 183 317 274 0 0 chrX 33226417 33226498 -129373432 + MIR SINE MIR 73 153 -55 284 156 167 0 chrX 33226542 33226612 -129373318 + MER5A DNA MER1_type 4 87 -102 1039 286 94 51 chrX 33227437 33227906 -129372024 + MLT1J LTR MaLR 9 497 -14 917 295 21 0 chrX 33227940 33228181 -129371749 - LTR16A LTR ERVL -6 444 199 201 239 134 0 chrX 33228181 33228248 -129371682 + MIR SINE MIR 112 187 -75 289 299 0 0 chrX 33228558 33228635 -129371295 + L2 LINE L2 3194 3270 -2 1737 98 0 0 chrX 33228720 33228956 -129370974 - AluSg/x SINE Alu -5 305 70 253 323 11 21 chrX 33228978 33229071 -129370859 + MIR SINE MIR 100 191 -71 1072 217 44 9 chrX 33229723 33229949 -129369981 + MIR SINE MIR 10 243 -19 393 230 42 164 chrX 33230481 33230694 -129369236 - MLT1K LTR MaLR -196 392 206 349 321 30 15 chrX 33233774 33233905 -129366025 + MIR SINE MIR 32 164 -98 380 189 159 0 chrX 33234210 33234327 -129365603 + MIR SINE MIR 45 185 -77 303 198 86 12 chrX 33234506 33234587 -129365343 - MLT1K LTR MaLR 0 588 502 1419 228 37 26 chrX 33234663 33235044 -129364886 + LTR16C LTR ERVL 107 491 0 374 238 0 0 chrX 33235052 33235132 -129364798 - MLT1K LTR MaLR -110 478 399 467 301 9 0 chrX 33235642 33235755 -129364175 - MER81 DNA DNA 0 114 1 559 274 44 69 chrX 33235893 33236147 -129363783 + L1ME3 LINE L1 5583 5827 -294 1513 239 88 37 chrX 33236147 33236612 -129363318 - LTR16C LTR ERVL 0 491 3 559 274 44 69 chrX 33236612 33236718 -129363212 + L1ME3 LINE L1 5827 5934 -187 843 243 156 0 chrX 33236960 33237248 -129362682 - MER46C DNA MER2_type -1 337 5 333 216 27 14 chrX 33237472 33237546 -129362384 - MER5A DNA MER1_type -106 83 9 687 173 15 63 chrX 33237962 33238151 -129361779 + L1ME3 LINE L1 5988 6170 0 699 276 145 13 chrX 33238541 33238852 -129361078 + MLT1J LTR MaLR 149 500 -11 1138 231 151 41 chrX 33239021 33239506 -129360424 + MLT1H LTR MaLR 12 549 0 482 279 138 41 chrX 33240660 33241029 -129358901 + MLT1I LTR MaLR 5 409 0 2127 113 6 53 chrX 33241166 33241484 -129358446 + AluSx SINE Alu 1 303 -9 598 201 37 37 chrX 33243308 33243497 -129356433 + MER53 DNA DNA 1 189 0 801 230 85 5 chrX 33244671 33244871 -129355059 - LTR16C LTR ERVL 0 491 276 887 161 175 84 chrX 33244872 33245086 -129354844 - MER5C DNA MER1_type -1 323 75 1808 124 26 4 chrX 33245086 33245351 -129354579 - AluSx SINE Alu -9 303 33 887 161 175 84 chrX 33245351 33245422 -129354508 - MER5C DNA MER1_type -249 75 12 229 235 224 0 chrX 33245422 33245507 -129354423 - LTR16C LTR ERVL -213 278 175 189 229 0 0 chrX 33246040 33246075 -129353855 - MIR SINE MIR -137 71 37 350 263 9 61 chrX 33246087 33246201 -129353729 + MIR SINE MIR 105 212 -50 824 245 19 77 chrX 33246331 33246624 -129353306 + L1MC4 LINE L1 7640 7949 -93 351 0 0 0 chrX 33246624 33246663 -129353267 + (CA)n Simple_repeat Simple_repeat 2 40 0 824 245 19 77 chrX 33246663 33246703 -129353227 + L1MC4 LINE L1 7949 7990 -52 1804 151 27 3 chrX 33246703 33247001 -129352929 + AluJb SINE Alu 1 305 -7 824 245 19 77 chrX 33247001 33247094 -129352836 + L1MC4 LINE L1 7990 8042 0 3688 102 28 4 chrX 33247268 33247808 -129352122 - L1PB3 LINE L1 -2 6152 5600 968 283 111 11 chrX 33248376 33248726 -129351204 + MLT1L LTR MaLR 230 614 -1 307 294 37 18 chrX 33248950 33249059 -129350871 + MER5A DNA MER1_type 7 117 -72 370 308 57 64 chrX 33249812 33250267 -129349663 + LTR67 LTR ERVL 97 548 -9 1162 244 181 26 chrX 33250343 33250802 -129349128 - L1ME3A LINE L1 -111 6059 5530 259 263 298 0 chrX 33251282 33251396 -129348534 - MER96 DNA MER1_type? 0 175 28 397 287 140 6 chrX 33251409 33251573 -129348357 + MIR SINE MIR 75 260 -2 245 269 0 0 chrX 33252209 33252261 -129347669 + polypyrimidine Low_complexity Low_complexity 1 52 0 1023 193 44 62 chrX 33252320 33252708 -129347222 - L1MC5 LINE L1 -30 7931 7551 467 230 161 62 chrX 33253544 33253609 -129346321 + MER5A DNA MER1_type 7 64 -125 1556 167 21 28 chrX 33253609 33253896 -129346034 + AluJo SINE Alu 21 305 -7 467 230 161 62 chrX 33253896 33253991 -129345939 + MER5A DNA MER1_type 64 183 -6 824 290 41 8 chrX 33255862 33255960 -129343970 + MIR SINE MIR 8 101 -161 1110 273 91 26 chrX 33255960 33256421 -129343509 + LTR16C LTR ERVL 1 491 0 824 290 41 8 chrX 33256421 33256567 -129343363 + MIR SINE MIR 101 260 -2 219 69 0 0 chrX 33257169 33257198 -129342732 + (T)n Simple_repeat Simple_repeat 1 29 0 298 233 0 0 chrX 33257322 33257395 -129342535 - MLT1F LTR MaLR -16 579 507 372 235 85 40 chrX 33257440 33257664 -129342266 - MLT1F LTR MaLR -169 373 112 1485 223 50 55 chrX 33258040 33258516 -129341414 - MLT1K LTR MaLR -2 474 1 688 179 22 8 chrX 33259329 33259463 -129340467 - LTR16A LTR ERVL -172 278 143 692 249 6 12 chrX 33260772 33260937 -129338993 + MER5B DNA MER1_type 4 167 -11 230 235 7 140 chrX 33260939 33261075 -129338855 - MLT1H LTR MaLR 0 549 432 312 250 57 48 chrX 33261232 33261358 -129338572 - MLT1H LTR MaLR -264 162 51 421 260 58 45 chrX 33261495 33261649 -129338281 + MIR SINE MIR 50 205 -57 708 261 82 33 chrX 33262044 33262374 -129337556 + LTR16A LTR ERVL 105 450 0 2409 98 0 13 chrX 33265702 33266019 -129333911 - AluSq SINE Alu 0 313 1 345 246 82 49 chrX 33266162 33266284 -129333646 + MIR SINE MIR 84 209 -53 180 152 0 0 chrX 33266556 33266589 -129333341 + (TG)n Simple_repeat Simple_repeat 1 33 0 304 185 62 0 chrX 33267835 33267900 -129332030 + MIR SINE MIR 30 98 -110 600 267 104 9 chrX 33268017 33268238 -129331692 + MLT1H LTR MaLR 4 245 -304 223 288 0 61 chrX 33268474 33268540 -129331390 - L2 LINE L2 0 3272 3211 214 244 0 0 chrX 33268792 33268837 -129331093 + GA-rich Low_complexity Low_complexity 3 47 0 256 198 0 74 chrX 33268855 33268936 -129330994 - HsTC2 DNA Tc2 -1819 79 5 2247 124 0 0 chrX 33269020 33269319 -129330611 + AluSx SINE Alu 1 299 -13 2618 161 42 46 chrX 33271514 33271592 -129328338 - MLT2B1 LTR ERVL -2 518 441 195 42 0 0 chrX 33271592 33271616 -129328314 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 2618 161 42 46 chrX 33271616 33272057 -129327873 - MLT2B1 LTR ERVL -79 441 1 331 235 0 37 chrX 33272467 33272548 -129327382 - L2 LINE L2 -1 3312 3235 237 254 159 29 chrX 33272565 33272703 -129327227 - LTR67 LTR ERVL -19 538 383 271 318 91 98 chrX 33272959 33273223 -129326707 - L2 LINE L2 -71 3201 2940 720 228 138 0 chrX 33273409 33273598 -129326332 - MIR SINE MIR 0 262 48 1651 217 33 8 chrX 33273681 33274073 -129325857 + LTR16C LTR ERVL 54 455 -36 2317 146 0 32 chrX 33274596 33274973 -129324957 + MLT1A1 LTR MaLR 1 365 0 1809 242 78 43 chrX 33274974 33275549 -129324381 + MLT1G1 LTR MaLR 1 595 0 439 232 64 16 chrX 33276405 33276530 -129323400 + MIR SINE MIR 68 198 -64 1242 263 140 18 chrX 33276907 33277418 -129322512 + L2 LINE L2 2741 3313 0 276 219 0 0 chrX 33277543 33277625 -129322305 + (CA)n Simple_repeat Simple_repeat 1 82 0 180 228 0 0 chrX 33277696 33277753 -129322177 + (CA)n Simple_repeat Simple_repeat 2 58 0 192 266 0 0 chrX 33277802 33277911 -129322019 + (CA)n Simple_repeat Simple_repeat 2 110 0 2315 107 7 0 chrX 33277954 33278264 -129321666 - AluSx SINE Alu 0 312 1 222 331 97 55 chrX 33278281 33278426 -129321504 + L2 LINE L2 2890 3040 -232 1177 211 65 12 chrX 33278427 33278674 -129321256 + MIR SINE MIR 2 261 -1 373 347 8 0 chrX 33278906 33279027 -129320903 + MIR3 SINE MIR 87 208 0 429 301 102 11 chrX 33279138 33279314 -129320616 - MIR3 SINE MIR -3 205 14 618 313 62 0 chrX 33279471 33279666 -129320264 - MIR SINE MIR -13 249 43 307 260 0 40 chrX 33279909 33280009 -129319921 - MLT1H LTR MaLR 0 549 454 506 278 78 31 chrX 33280103 33280358 -129319572 - MLT1H LTR MaLR -270 279 13 315 343 98 0 chrX 33281168 33281311 -129318619 + MIR SINE MIR 105 261 -1 288 161 0 0 chrX 33281448 33281510 -129318420 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 266 298 57 24 chrX 33281512 33281636 -129318294 - L2 LINE L2 0 3313 3186 436 304 58 38 chrX 33281658 33281974 -129317956 - L3 LINE CR1 -9 1568 1173 2055 149 13 43 chrX 33282238 33282613 -129317317 + THE1B LTR MaLR 1 364 0 1088 258 99 21 chrX 33282814 33283237 -129316693 + LTR16C LTR ERVL 6 461 -30 257 68 14 68 chrX 33283370 33283443 -129316487 + (TC)n Simple_repeat Simple_repeat 1 69 0 300 179 36 32 chrX 33283448 33283705 -129316225 + CT-rich Low_complexity Low_complexity 1 258 0 248 143 40 46 chrX 33283753 33283928 -129316002 + CT-rich Low_complexity Low_complexity 1 174 0 23 0 0 0 chrX 33284452 33284475 -129315455 + AT_rich Low_complexity Low_complexity 1 23 0 183 206 164 14 chrX 33284793 33284866 -129315064 - MIR SINE MIR -10 252 169 659 251 111 5 chrX 33284870 33285077 -129314853 - MIR SINE MIR -6 256 28 604 262 75 26 chrX 33285148 33285415 -129314515 - LTR16A1 LTR ERVL -17 440 161 414 0 0 0 chrX 33285940 33285986 -129313944 + (CA)n Simple_repeat Simple_repeat 1 46 0 195 100 0 0 chrX 33286009 33286039 -129313891 + (TC)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chrX 33286039 33286064 -129313866 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chrX 33286443 33286473 -129313457 + AT_rich Low_complexity Low_complexity 1 30 0 1833 248 31 31 chrX 33286619 33287192 -129312738 + L1ME3A LINE L1 5589 6161 -9 30564 101 21 62 chrX 33289731 33291699 -129308231 + L1PA6 LINE L1 13 2059 -4095 2385 90 0 3 chrX 33291699 33291999 -129307931 + AluY SINE Alu 1 299 -12 30564 101 21 62 chrX 33291999 33296442 -129303488 + L1PA6 LINE L1 2059 6154 0 7082 59 5 1 chrX 33296445 33297580 -129302350 + L1PA7 LINE L1 5002 6139 -15 264 200 0 0 chrX 33297580 33297640 -129302290 + (TA)n Simple_repeat Simple_repeat 1 60 0 287 255 28 47 chrX 33297698 33297804 -129302126 - MIR3 SINE MIR -7 201 98 194 240 195 65 chrX 33297792 33297946 -129301984 - MIR SINE MIR -3 259 86 * 731 231 26 163 chrX 33298331 33298860 -129301070 - LTR16A1 LTR ERVL 0 457 1 489 271 71 29 chrX 33299430 33299570 -129300360 - L2 LINE L2 -5 3267 3122 1632 233 93 13 chrX 33299685 33300135 -129299795 + MLT1J LTR MaLR 19 504 -7 514 333 90 24 chrX 33300308 33300563 -129299367 + LTR16A LTR ERVL 25 296 -154 772 278 22 45 chrX 33300690 33301003 -129298927 + LTR16A LTR ERVL 145 450 0 342 358 0 0 chrX 33301247 33301378 -129298552 + MIR SINE MIR 24 153 -72 1263 188 18 5 chrX 33301410 33301628 -129298302 + MER58A DNA MER1_type 1 221 -3 1640 266 58 25 chrX 33301689 33301805 -129298125 - L2 LINE L2 -1 3312 3201 1732 184 97 27 chrX 33301805 33302175 -129297755 + MSTD LTR MaLR 1 396 0 1640 266 58 25 chrX 33302175 33302822 -129297108 - L2 LINE L2 -112 3201 2512 285 240 53 0 chrX 33303124 33303199 -129296731 + L2 LINE L2 2671 2749 -565 975 249 170 25 chrX 33303211 33303653 -129296277 + MLT1H1 LTR MaLR 50 555 0 268 385 73 4 chrX 33305246 33305480 -129294450 + L2 LINE L2 2811 3060 -212 384 232 11 0 chrX 33305560 33305655 -129294275 - LTR16C LTR ERVL -8 483 388 191 437 63 7 chrX 33305916 33306058 -129293872 + L2 LINE L2 3122 3271 -1 201 258 15 15 chrX 33306471 33306537 -129293393 + L2 LINE L2 2821 2886 -427 1157 234 75 51 chrX 33306537 33306990 -129292940 + MLT1C LTR MaLR 1 372 -2 1444 243 25 54 chrX 33306990 33307435 -129292495 + L2 LINE L2 2882 3313 0 514 306 104 10 chrX 33307493 33307686 -129292244 - MIR SINE MIR -48 214 4 369 0 0 0 chrX 33307817 33307858 -129292072 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 73 0 0 chrX 33307860 33307901 -129292029 + (GA)n Simple_repeat Simple_repeat 2 42 0 779 264 58 39 chrX 33308091 33308473 -129291457 + LTR16C LTR ERVL 64 452 -39 183 310 92 23 chrX 33308489 33308576 -129291354 - L2 LINE L2 -26 3246 3154 201 261 31 31 chrX 33308829 33308894 -129291036 - L2 LINE L2 -36 3236 3172 478 418 45 16 chrX 33310301 33310610 -129289320 - L2 LINE L2 0 3272 2955 1712 174 37 6 chrX 33310650 33310971 -129288959 - MSTB LTR MaLR 0 426 96 1788 171 33 6 chrX 33311073 33311407 -129288523 - MSTB LTR MaLR -83 343 1 1511 229 95 36 chrX 33311502 33312083 -129287847 + L1MC5 LINE L1 7312 7926 -35 279 319 144 6 chrX 33312089 33312249 -129287681 - L2 LINE L2 -342 2972 2791 1868 206 62 9 chrX 33312525 33312961 -129286969 - MLT1C LTR MaLR -8 459 1 1575 203 60 34 chrX 33314112 33314526 -129285404 + MLT1C LTR MaLR 8 432 -35 343 272 19 19 chrX 33314908 33315011 -129284919 - L2 LINE L2 -1 3271 3169 1747 166 58 76 chrX 33315307 33315704 -129284226 + MLT1B LTR MaLR 1 390 0 245 301 122 32 chrX 33315873 33316029 -129283901 + MIR SINE MIR 21 190 -72 2749 110 0 0 chrX 33316078 33316442 -129283488 - THE1B LTR MaLR 0 364 1 670 249 49 101 chrX 33316444 33316655 -129283275 - LTR16C LTR ERVL -14 477 286 1942 158 0 0 chrX 33316655 33316970 -129282960 + AluJo SINE Alu 1 315 0 670 249 49 101 chrX 33316970 33317083 -129282847 - LTR16C LTR ERVL -205 286 169 1580 176 133 18 chrX 33317087 33317484 -129282446 - MLT1D LTR MaLR 0 505 63 2231 157 41 10 chrX 33317574 33317987 -129281943 + MSTB1 LTR MaLR 7 432 0 302 252 144 50 chrX 33318205 33318383 -129281547 - MIR SINE MIR -59 203 18 1380 217 110 10 chrX 33318928 33319311 -129280619 + LTR16C LTR ERVL 71 491 0 313 206 33 11 chrX 33319607 33319699 -129280231 + L1MC5 LINE L1 7832 7925 -36 465 286 110 9 chrX 33319770 33320125 -129279805 + LTR16C LTR ERVL 84 491 0 1700 164 17 24 chrX 33320259 33320552 -129279378 + AluJb SINE Alu 1 291 -21 403 297 55 16 chrX 33321314 33321442 -129278488 + MLT1G1 LTR MaLR 139 271 -284 1640 131 25 0 chrX 33321465 33321748 -129278182 + L1MA8 LINE L1 5988 6277 -14 3050 135 4 8 chrX 33321748 33322215 -129277715 + L1PB4 LINE L1 5683 6154 -2 926 176 0 16 chrX 33322241 33322428 -129277502 - L1MA3 LINE L1 0 6305 6122 989 198 118 4 chrX 33322490 33322727 -129277203 + MLT1G1 LTR MaLR 332 595 0 642 286 145 7 chrX 33322783 33323066 -129276864 + MLT1J2 LTR MaLR 1 322 -128 298 194 16 0 chrX 33323376 33323438 -129276492 + MLT1J2 LTR MaLR 388 450 0 251 356 45 23 chrX 33323511 33323688 -129276242 + L2 LINE L2 3130 3310 -3 479 284 105 0 chrX 33323692 33323915 -129276015 - MIR SINE MIR -10 252 1 207 292 0 0 chrX 33324349 33324397 -129275533 + (TG)n Simple_repeat Simple_repeat 1 48 0 401 314 75 64 chrX 33326815 33327255 -129272675 + LTR16B LTR ERVL 1 445 -5 377 282 57 32 chrX 33327653 33327777 -129272153 + L2 LINE L2 3142 3268 -4 483 261 97 36 chrX 33328239 33328309 -129271621 - MIR SINE MIR -42 220 156 2453 66 10 3 chrX 33328309 33328612 -129271318 - AluY SINE Alu -6 305 1 483 261 97 36 chrX 33328612 33328736 -129271194 - MIR SINE MIR -106 156 14 350 260 23 11 chrX 33329114 33329256 -129270674 - MIR SINE MIR -72 190 8 986 214 5 0 chrX 33330100 33330287 -129269643 + AluJo SINE Alu 123 310 -2 383 248 8 33 chrX 33330319 33330440 -129269490 - MER45C DNA AcHobo -102 851 734 692 189 5 13 chrX 33330535 33330717 -129269213 - MER45C DNA AcHobo -686 267 55 379 284 88 34 chrX 33330735 33330939 -129268991 + LTR16C LTR ERVL 115 329 -162 2000 184 51 51 chrX 33331086 33331553 -129268377 - MLT1C LTR MaLR 0 467 1 332 213 13 0 chrX 33331666 33331741 -129268189 - MER5A DNA MER1_type -83 106 31 239 169 12 133 chrX 33332404 33332487 -129267443 - MLT1H LTR MaLR 0 549 477 599 229 46 67 chrX 33332545 33332785 -129267145 - MLT1H LTR MaLR -248 301 67 693 241 107 23 chrX 33333732 33333948 -129265982 + MIR SINE MIR 17 250 -12 1085 226 15 11 chrX 33333960 33334226 -129265704 - MER46C DNA MER2_type -2 336 70 399 119 0 0 chrX 33334889 33334956 -129264974 + (TG)n Simple_repeat Simple_repeat 2 68 0 531 264 38 54 chrX 33335451 33335543 -129264387 - LTR16C LTR ERVL -3 466 374 2477 152 59 2 chrX 33335543 33335983 -129263947 - MLT1C LTR MaLR -2 465 1 531 264 38 54 chrX 33335983 33336154 -129263776 - LTR16C LTR ERVL -95 374 227 2744 88 54 10 chrX 33336220 33336628 -129263302 + MSTA LTR MaLR 3 428 0 601 312 52 13 chrX 33337763 33337994 -129261936 + MIR SINE MIR 23 262 0 740 211 177 93 chrX 33338012 33338504 -129261426 - MLT1H LTR MaLR -3 546 14 400 299 41 0 chrX 33339150 33339247 -129260683 - L2 LINE L2 -6 3307 3207 305 200 17 0 chrX 33339502 33339562 -129260368 - MIR SINE MIR -38 224 164 893 261 146 50 chrX 33339563 33339974 -129259956 - MLT1H LTR MaLR 0 549 80 2026 136 0 3 chrX 33339974 33340283 -129259647 - AluJb SINE Alu -4 308 1 893 261 146 50 chrX 33340283 33340372 -129259558 - MLT1H LTR MaLR -469 80 1 544 250 18 0 chrX 33340374 33340520 -129259410 - MIR SINE MIR -63 145 17 209 200 25 0 chrX 33341518 33341558 -129258372 + MIR SINE MIR 2 42 -220 376 265 29 20 chrX 33341852 33341954 -129257976 - MLT1K LTR MaLR -343 245 143 620 176 164 24 chrX 33342136 33342301 -129257629 - MER5A DNA MER1_type -1 188 1 2497 68 0 0 chrX 33343138 33343447 -129256483 - AluSc SINE Alu 0 309 1 1170 185 47 126 chrX 33343587 33344050 -129255880 - MLT2D LTR ERVL -10 510 1 296 274 71 12 chrX 33344075 33344159 -129255771 + L2 LINE L2 3225 3313 0 266 210 74 12 chrX 33344897 33344978 -129254952 + MIR SINE MIR 113 198 -64 220 219 0 0 chrX 33344989 33345030 -129254900 - MIR SINE MIR -6 256 216 193 231 31 46 chrX 33345508 33345573 -129254357 + MIR SINE MIR 188 251 -11 780 253 43 17 chrX 33345702 33345935 -129253995 - L2 LINE L2 -7 3306 3068 423 306 61 7 chrX 33345933 33346080 -129253850 + MIR SINE MIR 91 245 -17 * 766 244 122 48 chrX 33346596 33346960 -129252970 - LTR33 LTR ERVL -1 520 110 2225 112 0 0 chrX 33346960 33347272 -129252658 + AluSx SINE Alu 1 312 0 766 244 122 48 chrX 33347272 33347391 -129252539 - LTR33 LTR ERVL -411 110 1 956 172 58 6 chrX 33347449 33347623 -129252307 - MER5A DNA MER1_type 0 189 7 826 173 0 8 chrX 33347624 33347757 -129252173 - FLAM_A SINE Alu -1 132 1 203 42 0 0 chrX 33347759 33347783 -129252147 - MER5A DNA MER1_type -165 24 1 265 156 46 28 chrX 33349471 33349580 -129250350 + (CA)n Simple_repeat Simple_repeat 1 111 0 337 91 73 0 chrX 33353188 33353243 -129246687 + MLT1J1 LTR MaLR 1 59 -387 319 145 29 0 chrX 33353366 33353435 -129246495 + CT-rich Low_complexity Low_complexity 3 73 0 602 238 81 57 chrX 33353449 33353570 -129246360 + MLT1J1 LTR MaLR 177 294 -152 996 281 66 23 chrX 33353570 33354008 -129245922 - LTR16A1 LTR ERVL 0 457 1 602 238 81 57 chrX 33354008 33354134 -129245796 + MLT1J1 LTR MaLR 294 430 -16 414 259 0 0 chrX 33354169 33354254 -129245676 - MER58B DNA MER1_type 0 341 257 407 309 24 18 chrX 33354840 33355005 -129244925 + HERVL LTR ERVL 5160 5325 -329 481 325 39 31 chrX 33355139 33355425 -129244505 + LTR16A LTR ERVL 57 344 -106 4620 173 37 11 chrX 33355451 33356958 -129242972 + L1MB8 LINE L1 4620 6166 -12 236 214 14 86 chrX 33356958 33357028 -129242902 + LTR16A LTR ERVL 379 443 -7 280 185 93 130 chrX 33357805 33357913 -129242017 - L2 LINE L2 -14 3258 3155 753 213 91 30 chrX 33358129 33358326 -129241604 + MER3 DNA MER1_type 1 209 0 736 306 62 22 chrX 33358564 33358888 -129241042 - MER102b DNA MER1_type 0 341 5 280 225 81 90 chrX 33358984 33359095 -129240835 + L2 LINE L2 3163 3272 0 194 298 33 91 chrX 33360008 33360129 -129239801 - MIR3 SINE MIR -11 197 84 468 130 210 111 chrX 33361156 33361201 -129238729 - MER5A DNA MER1_type -3 186 147 2290 90 0 0 chrX 33361201 33361500 -129238430 + AluSx SINE Alu 1 299 -13 468 130 210 111 chrX 33361500 33361616 -129238314 - MER5A DNA MER1_type -42 147 9 422 182 20 0 chrX 33361796 33361895 -129238035 + GA-rich Low_complexity Low_complexity 4 104 0 617 163 192 6 chrX 33362604 33362752 -129237178 + MER5A DNA MER1_type 4 183 -6 224 235 49 131 chrX 33363664 33363733 -129236197 + L3 LINE CR1 615 688 -889 2168 109 3 6 chrX 33363733 33364046 -129235884 + AluSx SINE Alu 1 312 0 224 235 49 131 chrX 33364046 33364159 -129235771 + L3 LINE CR1 688 782 -795 809 307 80 23 chrX 33364342 33364694 -129235236 + L3 LINE CR1 797 1168 -409 275 279 153 8 chrX 33365096 33365279 -129234651 - MLT1J LTR MaLR -174 392 205 613 304 60 54 chrX 33365338 33365822 -129234108 - L2 LINE L2 -846 2468 1982 1886 178 27 104 chrX 33366233 33366788 -129233142 + L1ME3 LINE L1 5651 6162 0 2202 99 3 0 chrX 33367146 33367450 -129232480 - AluSx SINE Alu -6 306 2 364 306 39 34 chrX 33367600 33367806 -129232124 + L3 LINE CR1 1150 1356 -221 278 339 8 25 chrX 33367810 33367928 -129232002 - L3 LINE CR1 -471 1106 991 218 260 60 30 chrX 33368029 33368129 -129231801 - L3 LINE CR1 -621 956 854 248 304 91 60 chrX 33368353 33368742 -129231188 + LTR33 LTR ERVL 4 379 -142 2251 123 42 25 chrX 33368742 33369100 -129230830 - THE1B LTR MaLR 0 364 1 12143 85 11 0 chrX 33369100 33370663 -129229267 - THE1B-int LTR MaLR 0 1580 1 2241 154 31 14 chrX 33370663 33371021 -129228909 - THE1B LTR MaLR 0 364 1 248 304 91 60 chrX 33371021 33371097 -129228833 + LTR33 LTR ERVL 378 513 -8 319 296 45 45 chrX 33371490 33371653 -129228277 - MIR3 SINE MIR -4 204 43 394 77 62 15 chrX 33371877 33371942 -129227988 - MSTC LTR MaLR -360 68 1 7729 181 99 33 chrX 33371955 33373577 -129226353 - MLT1A1-int LTR MaLR -5 1730 2 1490 176 33 109 chrX 33373578 33373971 -129225959 - MLT1A1 LTR MaLR 0 365 3 5421 102 24 32 chrX 33374287 33374642 -129225288 - L1MA7 LINE L1 -1 6290 5934 1885 146 0 3 chrX 33374642 33374936 -129224994 - AluJb SINE Alu -19 293 1 5421 102 24 32 chrX 33374936 33375462 -129224468 - L1MA7 LINE L1 -357 5934 5416 1267 276 75 8 chrX 33375462 33375824 -129224106 + LTR16C LTR ERVL 105 490 -1 4235 137 26 0 chrX 33376315 33377011 -129222919 + L1MB3 LINE L1 5445 6158 -25 679 195 0 8 chrX 33377139 33377257 -129222673 - FLAM_C SINE Alu -25 118 2 1596 242 35 42 chrX 33377361 33377815 -129222115 - LTR16A1 LTR ERVL 0 457 7 358 311 25 8 chrX 33377903 33378025 -129221905 + MIR SINE MIR 35 158 -104 322 302 113 63 chrX 33378077 33378219 -129221711 + MLT1K LTR MaLR 110 243 -345 2165 112 0 0 chrX 33378219 33378515 -129221415 - AluSx SINE Alu -16 296 1 322 302 113 63 chrX 33378515 33378769 -129221161 + MLT1K LTR MaLR 243 526 -62 207 0 0 0 chrX 33378772 33378795 -129221135 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 278 269 0 0 chrX 33378824 33378891 -129221039 + MLT1K LTR MaLR 522 588 0 211 283 19 0 chrX 33378894 33378947 -129220983 + MIR SINE MIR 154 207 -55 209 235 81 128 chrX 33379443 33379592 -129220338 + MER5A DNA MER1_type 48 189 0 1416 249 104 39 chrX 33380206 33380667 -129219263 - LTR16C LTR ERVL 0 491 1 1211 186 54 120 chrX 33380736 33381160 -129218770 - MSTD LTR MaLR 0 396 1 758 233 100 54 chrX 33383071 33383322 -129216608 - MLT1H LTR MaLR 0 549 311 2434 157 60 0 chrX 33383322 33383724 -129216206 + MSTB LTR MaLR 1 426 0 758 233 100 54 chrX 33383724 33383893 -129216037 - MLT1H LTR MaLR -238 311 42 6741 22 4 0 chrX 33383893 33384668 -129215262 + L1PA4 LINE L1 5378 6155 0 758 233 100 54 chrX 33384668 33384712 -129215218 - MLT1H LTR MaLR -507 42 1 277 250 153 51 chrX 33386944 33387140 -129212790 - MLT1J LTR MaLR -8 503 288 847 227 36 5 chrX 33387179 33387373 -129212557 - MLT1J LTR MaLR -311 200 1 1061 309 91 36 chrX 33387702 33388282 -129211648 + L3 LINE CR1 445 1056 -521 652 276 168 67 chrX 33388286 33388767 -129211163 + MLT1H LTR MaLR 20 549 0 510 344 199 12 chrX 33388767 33388962 -129210968 + L3 LINE CR1 1069 1226 -351 1427 209 117 3 chrX 33388962 33389288 -129210642 + MLT1A1 LTR MaLR 1 363 -2 510 344 199 12 chrX 33389288 33389438 -129210492 + L3 LINE CR1 1226 1479 -98 180 171 0 49 chrX 33390468 33390509 -129209421 + L2 LINE L2 3168 3206 -107 262 355 6 29 chrX 33391097 33391269 -129208661 + GA-rich Low_complexity Low_complexity 3 170 0 984 163 27 63 chrX 33391577 33391798 -129208132 + MER20 DNA MER1_type 1 213 -6 583 204 136 14 chrX 33391802 33391949 -129207981 + MER5A DNA MER1_type 25 189 0 908 147 7 0 chrX 33391993 33392136 -129207794 - MER3 DNA MER1_type -52 157 14 2404 158 44 7 chrX 33392387 33392844 -129207086 - Charlie4a DNA MER1_type 0 508 35 500 243 7 56 chrX 33392884 33393028 -129206902 - MLT1J2 LTR MaLR -201 249 113 1767 144 7 3 chrX 33393219 33393511 -129206419 + AluSx SINE Alu 5 297 -15 858 217 50 130 chrX 33394728 33394999 -129204931 + L1MC4 LINE L1 7597 7814 -228 2464 141 8 0 chrX 33394999 33395361 -129204569 + MLT1A1 LTR MaLR 1 365 0 858 217 50 130 chrX 33395361 33395572 -129204358 + L1MC4 LINE L1 7814 8040 -2 207 0 0 0 chrX 33395599 33395622 -129204308 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1783 170 3 0 chrX 33395622 33395906 -129204024 - AluJb SINE Alu -24 288 1 1208 132 159 40 chrX 33396073 33396396 -129203534 + MER33 DNA MER1_type 1 315 -9 397 299 192 23 chrX 33396584 33396820 -129203110 - L2 LINE L2 -315 2957 2686 1241 243 187 39 chrX 33396982 33397500 -129202430 + MLT1G1 LTR MaLR 1 595 0 323 240 94 0 chrX 33398572 33398668 -129201262 - MIR SINE MIR -74 188 84 2904 77 3 11 chrX 33398835 33399213 -129200717 + THE1C LTR MaLR 1 375 0 1192 206 95 14 chrX 33399884 33400180 -129199750 - MER5C DNA MER1_type -4 320 1 189 257 238 38 chrX 33400419 33400524 -129199406 - MIR3 SINE MIR -73 135 10 205 256 12 85 chrX 33401221 33401303 -129198627 + MIR SINE MIR 110 185 -77 536 246 119 0 chrX 33403641 33403775 -129196155 - MIR SINE MIR -99 163 14 389 250 17 75 chrX 33404562 33404682 -129195248 - L2 LINE L2 -8 3305 3193 372 237 127 34 chrX 33404706 33404824 -129195106 + L2 LINE L2 3142 3270 -2 355 292 88 18 chrX 33404832 33405003 -129194927 - MIR SINE MIR -51 211 29 372 157 114 0 chrX 33405156 33405226 -129194704 + L1MC4a LINE L1 6670 6747 -1061 1110 260 92 2 chrX 33405226 33405626 -129194304 + L1MC4 LINE L1 7607 8042 0 441 0 0 0 chrX 33406238 33406287 -129193643 + (TG)n Simple_repeat Simple_repeat 2 50 0 2114 103 0 3 chrX 33406492 33406792 -129193138 + AluSc SINE Alu 1 299 -10 2097 74 3 11 chrX 33407520 33407805 -129192125 + AluSp SINE Alu 1 283 -30 513 306 38 11 chrX 33407886 33408151 -129191779 - L1MEd LINE L1 -3423 2706 2435 390 276 19 19 chrX 33408151 33408256 -129191674 + L2 LINE L2 3194 3298 -15 1747 141 3 24 chrX 33408260 33408551 -129191379 + AluSx SINE Alu 1 285 -27 354 306 10 5 chrX 33408568 33408777 -129191153 - L1MEd LINE L1 -3692 2437 2228 1322 188 18 47 chrX 33408794 33409071 -129190859 + AluJb SINE Alu 5 273 -39 1107 217 57 184 chrX 33409352 33410033 -129189897 + MLT1G LTR MaLR 1 590 0 1678 168 34 0 chrX 33410179 33410352 -129189578 - AluJo SINE Alu -5 307 118 186 71 0 0 chrX 33410352 33410380 -129189550 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 1678 168 34 0 chrX 33410380 33410503 -129189427 - AluJo SINE Alu -194 118 1 1749 263 93 88 chrX 33410564 33410825 -129189105 - L1MEd LINE L1 -4887 1232 974 441 0 0 0 chrX 33410825 33410874 -129189056 + (TG)n Simple_repeat Simple_repeat 2 50 0 1749 263 93 88 chrX 33410874 33410892 -129189038 - L1MEd LINE L1 -5145 974 958 1272 225 52 0 chrX 33410892 33411063 -129188867 - AluJo SINE Alu 0 305 112 423 0 0 0 chrX 33411063 33411110 -129188820 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1272 225 52 0 chrX 33411110 33411229 -129188701 - AluJo SINE Alu -193 112 1 1749 263 93 88 chrX 33411229 33411380 -129188550 - L1MEd LINE L1 -5161 958 809 1324 148 184 4 chrX 33411380 33411636 -129188294 + AluJb SINE Alu 1 302 0 1749 263 93 88 chrX 33411636 33411884 -129188046 - L1MEd LINE L1 -5310 809 564 2332 88 0 0 chrX 33411884 33412190 -129187740 + AluSg1 SINE Alu 1 306 -3 1749 263 93 88 chrX 33412190 33412729 -129187201 - L1MEd LINE L1 -5555 564 5 489 208 97 64 chrX 33413068 33413217 -129186713 + MIR SINE MIR 13 170 -92 3260 159 26 13 chrX 33413217 33413256 -129186674 - MLT2B3 LTR ERVL 0 554 517 591 62 0 0 chrX 33413256 33413336 -129186594 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 3260 159 26 13 chrX 33413336 33413843 -129186087 - MLT2B3 LTR ERVL -37 517 1 489 208 97 64 chrX 33413843 33413886 -129186044 + MIR SINE MIR 170 210 -52 419 283 141 1 chrX 33414259 33414417 -129185513 - MIR3 SINE MIR -8 200 21 691 243 129 62 chrX 33415636 33415807 -129184123 + MLT1J2 LTR MaLR 64 222 -228 1042 170 39 0 chrX 33415807 33415989 -129183941 + MER5A DNA MER1_type 1 189 0 691 243 129 62 chrX 33415989 33416158 -129183772 + MLT1J2 LTR MaLR 222 427 -23 1839 178 162 88 chrX 33416664 33417270 -129182660 + MLT1E1 LTR MaLR 4 654 0 674 263 91 93 chrX 33417293 33417729 -129182201 + LTR16A1 LTR ERVL 2 407 -50 200 174 0 43 chrX 33418037 33418083 -129181847 + GA-rich Low_complexity Low_complexity 5 48 0 934 239 132 39 chrX 33418522 33418722 -129181208 - LTR16C LTR ERVL -6 485 305 1803 130 0 70 chrX 33418722 33419053 -129180877 + AluJb SINE Alu 1 308 -4 934 239 132 39 chrX 33419053 33419207 -129180723 - LTR16C LTR ERVL -186 305 98 1661 173 48 57 chrX 33419489 33419878 -129180052 + MLT1B LTR MaLR 1 593 0 813 163 0 22 chrX 33420025 33420160 -129179770 + AluJo SINE Alu 1 132 -170 252 245 43 96 chrX 33420518 33420566 -129179364 + L2 LINE L2 3223 3265 -48 881 215 13 0 chrX 33420566 33420724 -129179206 + AluJo SINE Alu 137 296 -6 252 245 43 96 chrX 33420724 33420769 -129179161 + L2 LINE L2 3265 3311 -2 187 368 0 0 chrX 33420804 33420880 -129179050 - MIR3 SINE MIR -11 197 122 1705 213 90 25 chrX 33420939 33421338 -129178592 + LTR16C LTR ERVL 67 491 0 228 236 47 85 chrX 33421344 33421450 -129178480 - MIR3 SINE MIR -95 113 12 2060 165 25 6 chrX 33421751 33422109 -129177821 - MLT1A1 LTR MaLR 0 365 1 206 185 74 12 chrX 33422313 33422394 -129177536 + (CA)n Simple_repeat Simple_repeat 1 86 0 226 244 61 37 chrX 33422433 33422597 -129177333 + (CA)n Simple_repeat Simple_repeat 2 169 0 1971 266 63 17 chrX 33423451 33424083 -129175847 - MLT2F LTR ERVL 0 663 3 738 252 129 39 chrX 33424169 33424532 -129175398 - MLT1H LTR MaLR 0 542 23 226 327 36 9 chrX 33425089 33425199 -129174731 + MIR SINE MIR 150 262 0 1863 249 92 4 chrX 33425241 33425774 -129174156 - MLT1G LTR MaLR -9 581 2 598 296 76 14 chrX 33426019 33426242 -129173688 - MIR SINE MIR -17 245 9 952 258 189 20 chrX 33427519 33427915 -129172015 + MLT1K LTR MaLR 124 586 -2 2287 86 3 0 chrX 33428757 33429060 -129170870 + AluSp SINE Alu 1 304 -9 499 83 0 24 chrX 33429448 33429532 -129170398 + (TG)n Simple_repeat Simple_repeat 1 82 0 432 236 312 0 chrX 33429669 33429826 -129170104 - MIR SINE MIR -10 252 47 189 326 122 14 chrX 33429934 33430081 -129169849 + L2 LINE L2 3106 3268 -4 350 301 45 15 chrX 33430165 33430298 -129169632 + MIR SINE MIR 126 262 0 689 251 135 28 chrX 33431379 33431852 -129168078 + MLT1H1 LTR MaLR 1 555 0 2236 75 0 3 chrX 33432726 33433018 -129166912 + AluSq SINE Alu 1 291 -22 3124 107 5 0 chrX 33433154 33433586 -129166344 + MER57B LTR ERV1 1 434 0 740 263 28 32 chrX 33434248 33434465 -129165465 - MIR SINE MIR 0 262 47 808 155 31 0 chrX 33434585 33434714 -129165216 + FLAM_A SINE Alu 1 133 0 796 121 14 0 chrX 33434716 33434857 -129165073 + (GGAA)n Simple_repeat Simple_repeat 2 144 0 360 0 0 0 chrX 33436030 33436070 -129163860 + (TC)n Simple_repeat Simple_repeat 2 41 0 245 300 50 20 chrX 33436831 33436931 -129162999 + MIR SINE MIR 39 141 -67 2034 234 71 21 chrX 33438872 33439453 -129160477 - L1ME3 LINE L1 -1 6161 5552 325 160 0 53 chrX 33439516 33439591 -129160339 - MIR SINE MIR 0 262 192 400 306 19 0 chrX 33439737 33439845 -129160085 - MIR SINE MIR -62 146 37 819 249 137 59 chrX 33439973 33440514 -129159416 - MLT1G1 LTR MaLR -2 593 11 700 321 28 5 chrX 33440975 33441193 -129158737 + MIR SINE MIR 20 242 -20 386 160 132 0 chrX 33441273 33441379 -129158551 - L1ME3A LINE L1 -66 6104 5985 222 302 88 85 chrX 33442453 33442781 -129157149 + L2 LINE L2 2896 3224 -48 1302 251 47 21 chrX 33442795 33443217 -129156713 + LTR16C LTR ERVL 4 436 -55 15501 91 14 70 chrX 33443221 33443403 -129156527 - Tigger1 DNA MER2_type 0 2418 2227 741 209 50 0 chrX 33443403 33443571 -129156359 + FRAM SINE Alu 1 175 0 15501 91 14 70 chrX 33443571 33444342 -129155588 - Tigger1 DNA MER2_type -191 2227 1415 2254 108 10 0 chrX 33444342 33444639 -129155291 - AluSx SINE Alu -12 300 1 15501 91 14 70 chrX 33444639 33446105 -129153825 - Tigger1 DNA MER2_type -1003 1415 1 310 137 20 0 chrX 33446105 33446156 -129153774 + LTR16C LTR ERVL 434 485 -6 218 191 0 0 chrX 33446166 33446208 -129153722 + L2 LINE L2 3272 3313 0 579 283 164 0 chrX 33447084 33447303 -129152627 - MIR SINE MIR 0 262 8 2372 88 27 3 chrX 33447433 33447640 -129152290 - MER39 LTR ERV1 0 707 506 2652 124 30 28 chrX 33447640 33447924 -129152006 - MSTA LTR MaLR 0 428 141 2238 104 7 3 chrX 33447924 33448233 -129151697 + AluY SINE Alu 1 310 -1 2652 124 30 28 chrX 33448233 33448375 -129151555 - MSTA LTR MaLR -287 141 1 2372 88 27 3 chrX 33448375 33448761 -129151169 - MER39 LTR ERV1 -201 506 5 1037 268 11 0 chrX 33448765 33449026 -129150904 - LTR16C LTR ERVL -17 474 211 201 244 0 0 chrX 33449185 33449226 -129150704 - MIR SINE MIR -105 157 117 2411 78 0 23 chrX 33449797 33450104 -129149826 + AluSx SINE Alu 2 301 -11 2302 194 32 22 chrX 33450267 33450766 -129149164 + MLT1D LTR MaLR 1 504 -1 241 292 25 119 chrX 33451081 33451283 -129148647 - MER5A DNA MER1_type 0 189 7 2275 83 49 0 chrX 33451406 33451694 -129148236 + AluSq SINE Alu 1 302 -11 1111 261 63 74 chrX 33451902 33452187 -129147743 + MLT1L LTR MaLR 5 282 -333 688 221 15 0 chrX 33452187 33452318 -129147612 + FLAM_A SINE Alu 1 133 0 1111 261 63 74 chrX 33452318 33452603 -129147327 + MLT1L LTR MaLR 282 569 -46 1015 216 71 56 chrX 33452686 33452893 -129147037 + MER2 DNA MER2_type 1 216 -129 404 78 250 0 chrX 33452893 33452957 -129146973 + MADE1 DNA Mariner 1 80 0 1015 216 71 56 chrX 33452957 33453087 -129146843 + MER2 DNA MER2_type 216 343 -2 3035 124 30 14 chrX 33453087 33453585 -129146345 + L1MA7 LINE L1 5784 6289 -2 577 95 0 0 chrX 33453597 33453671 -129146259 - AluSg/x SINE Alu -19 291 218 1727 249 80 16 chrX 33453703 33454193 -129145737 + MLT1G1 LTR MaLR 75 595 0 1242 211 0 0 chrX 33454247 33454470 -129145460 - MER58A DNA MER1_type 0 224 2 324 176 0 0 chrX 33455158 33455226 -129144704 + CT-rich Low_complexity Low_complexity 1 68 0 1600 277 59 23 chrX 33455391 33456246 -129143684 + HAL1 LINE L1 1 993 -1514 1071 236 51 8 chrX 33456251 33456488 -129143442 - MIR SINE MIR -1 261 15 2531 228 51 68 chrX 33456492 33457529 -129142401 + HAL1 LINE L1 998 2017 -490 1020 228 174 45 chrX 33457534 33457863 -129142067 - MLT1H LTR MaLR -4 545 133 2439 169 35 52 chrX 33457863 33458377 -129141553 + MLT1D LTR MaLR 1 505 0 1020 228 174 45 chrX 33458377 33458530 -129141400 - MLT1H LTR MaLR -416 133 1 1044 214 114 46 chrX 33458554 33458923 -129141007 + HAL1 LINE L1 2095 2488 -19 226 216 113 52 chrX 33459697 33459754 -129140176 + MIR SINE MIR 98 165 -97 2169 139 58 0 chrX 33459754 33460100 -129139830 - MER47A DNA MER2_type 0 366 1 226 216 113 52 chrX 33460100 33460139 -129139791 + MIR SINE MIR 165 200 -62 360 111 0 0 chrX 33460140 33460194 -129139736 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1798 159 0 0 chrX 33460198 33460474 -129139456 - AluJo SINE Alu -30 282 7 598 221 86 66 chrX 33460587 33460935 -129138995 + MLT1H LTR MaLR 100 549 0 1540 183 33 36 chrX 33461457 33461763 -129138167 - AluJb SINE Alu -7 305 1 252 321 86 0 chrX 33461835 33461916 -129138014 + L2 LINE L2 3148 3235 -37 830 128 14 5 chrX 33461921 33462148 -129137782 + (TGGA)n Simple_repeat Simple_repeat 1 229 0 430 330 77 0 chrX 33463439 33463633 -129136297 + L3b LINE CR1 1109 1317 -266 327 226 31 56 chrX 33463667 33463843 -129136087 - Charlie7 DNA MER1_type -5 2607 2435 2964 6 0 0 chrX 33463843 33464155 -129135775 - AluYb8 SINE Alu -6 312 1 327 226 31 56 chrX 33464155 33464173 -129135757 - Charlie7 DNA MER1_type -177 2435 2418 224 246 0 72 chrX 33464262 33464331 -129135599 + L2 LINE L2 3203 3266 -47 447 258 18 76 chrX 33464334 33464559 -129135371 - LTR16A1 LTR ERVL -7 450 239 229 179 107 71 chrX 33465190 33465274 -129134656 + MIR SINE MIR 60 146 -62 950 205 92 54 chrX 33466115 33466354 -129133576 + MIR SINE MIR 11 258 -4 395 271 0 11 chrX 33466357 33466538 -129133392 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 397 240 19 86 chrX 33466550 33466697 -129133233 + L1MC4 LINE L1 6526 6709 -1139 360 206 56 75 chrX 33466617 33466724 -129133206 - L1MCa LINE L1 -4364 2062 1958 * 245 197 55 87 chrX 33467236 33467363 -129132567 - MLT1I LTR MaLR -33 376 254 313 283 12 64 chrX 33467736 33467909 -129132021 - MLT1K LTR MaLR -28 560 397 247 293 88 20 chrX 33467949 33468096 -129131834 - MLT1K LTR MaLR -266 322 166 978 218 35 32 chrX 33468357 33468642 -129131288 - MLT1H LTR MaLR -188 367 53 532 40 13 0 chrX 33468642 33468718 -129131212 - AluY SINE Alu -1 311 235 965 129 29 0 chrX 33468718 33468858 -129131072 - AluSq/x SINE Alu -168 144 1 347 270 11 0 chrX 33468858 33468947 -129130983 - MLT1G1 LTR MaLR -490 105 16 248 314 105 16 chrX 33470543 33470667 -129129263 - L2 LINE L2 -1 3312 3178 617 310 55 9 chrX 33471466 33471792 -129128138 + L1MC/D LINE L1 5315 5655 -2153 217 286 0 16 chrX 33472179 33472242 -129127688 + GA-rich Low_complexity Low_complexity 4 65 0 287 261 109 59 chrX 33472291 33472410 -129127520 - MIR SINE MIR -64 144 20 383 247 14 110 chrX 33472781 33473000 -129126930 - MLT1K LTR MaLR 0 588 391 762 270 50 31 chrX 33473037 33473296 -129126634 - MLT1K LTR MaLR -180 408 145 309 89 0 0 chrX 33473412 33473457 -129126473 + (TG)n Simple_repeat Simple_repeat 2 46 0 308 279 194 18 chrX 33473490 33473655 -129126275 - L1MC4a LINE L1 -1630 6178 5985 384 231 22 0 chrX 33474425 33474538 -129125392 - MIR SINE MIR -49 213 99 183 129 0 0 chrX 33475241 33475272 -129124658 + (TG)n Simple_repeat Simple_repeat 2 32 0 2474 211 40 28 chrX 33476873 33477089 -129122841 - MLT1G LTR MaLR -1 589 377 2527 150 52 5 chrX 33477089 33477496 -129122434 + MSTB LTR MaLR 1 426 0 2474 211 40 28 chrX 33477496 33477852 -129122078 - MLT1G LTR MaLR -213 377 10 398 235 34 101 chrX 33478335 33478484 -129121446 - MIR3 SINE MIR -20 188 50 206 196 36 18 chrX 33479627 33479683 -129120247 + GA-rich Low_complexity Low_complexity 2 58 0 460 220 31 76 chrX 33480439 33480600 -129119330 + MIR3 SINE MIR 44 201 -7 1158 196 17 30 chrX 33480854 33481189 -129118741 + AluJo SINE Alu 86 417 0 251 279 0 0 chrX 33481196 33481264 -129118666 - MIR SINE MIR -78 184 117 212 340 204 6 chrX 33481286 33481448 -129118482 + MIR SINE MIR 13 206 -56 210 233 50 17 chrX 33481530 33481590 -129118340 + L2 LINE L2 3207 3268 -4 1122 117 0 0 chrX 33482417 33482596 -129117334 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 547 249 115 10 chrX 33482803 33483012 -129116918 + MIR SINE MIR 5 235 -27 521 262 141 19 chrX 33483052 33483258 -129116672 + MIR SINE MIR 20 250 -12 424 272 236 16 chrX 33483586 33483777 -129116153 + MIR SINE MIR 30 262 0 1605 172 63 0 chrX 33485307 33485592 -129114338 - AluJo SINE Alu -9 303 1 215 266 16 133 chrX 33485828 33485956 -129113974 + L2 LINE L2 2908 3020 -252 441 0 0 0 chrX 33486028 33486077 -129113853 + (CA)n Simple_repeat Simple_repeat 2 50 0 475 257 154 9 chrX 33486266 33486481 -129113449 - MIR SINE MIR 0 262 21 479 207 222 0 chrX 33486634 33486769 -129113161 + MER5A DNA MER1_type 9 173 -16 1894 221 124 7 chrX 33487032 33487571 -129112359 + L1ME3A LINE L1 5569 6170 0 477 0 0 0 chrX 33487964 33488017 -129111913 + (CA)n Simple_repeat Simple_repeat 2 54 0 511 284 78 29 chrX 33488100 33488343 -129111587 - MIR SINE MIR 0 262 8 864 158 27 22 chrX 33488407 33488591 -129111339 + MER53 DNA DNA 5 189 0 256 269 25 59 chrX 33488595 33488714 -129111216 - MIR3 SINE MIR -83 125 11 197 237 13 92 chrX 33488935 33489011 -129110919 + L2 LINE L2 3132 3201 -71 1257 275 199 8 chrX 33489191 33489668 -129110262 - MLT1G1 LTR MaLR 0 595 28 2345 100 3 0 chrX 33489921 33490221 -129109709 - AluSx SINE Alu -11 301 1 496 292 23 26 chrX 33490553 33490801 -129109129 + MLT1H LTR MaLR 53 269 -140 322 262 40 16 chrX 33490867 33490993 -129108937 + MLT1I LTR MaLR 281 409 0 332 271 0 85 chrX 33491335 33491414 -129108516 + L2 LINE L2 3137 3202 -70 2204 81 54 13 chrX 33491414 33491548 -129108382 + AluSx SINE Alu 1 128 -184 2572 80 0 3 chrX 33491548 33491862 -129108068 + AluSp SINE Alu 1 313 0 2204 81 54 13 chrX 33491862 33492025 -129107905 + AluSx SINE Alu 128 310 -2 332 271 0 85 chrX 33492025 33492074 -129107856 + L2 LINE L2 3202 3254 -18 210 37 0 0 chrX 33492483 33492510 -129107420 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 236 271 144 27 chrX 33492597 33492785 -129107145 - L2 LINE L2 -872 2442 2233 1793 252 16 2 chrX 33492798 33493222 -129106708 - LTR16C LTR ERVL -11 480 51 748 188 0 0 chrX 33493301 33493434 -129106496 + FLAM_A SINE Alu 1 133 0 2238 109 3 0 chrX 33493472 33493779 -129106151 - AluSp SINE Alu 0 308 1 1483 275 129 15 chrX 33495719 33496246 -129103684 + MLT1L LTR MaLR 1 587 -28 2505 71 3 0 chrX 33496458 33496754 -129103176 - AluSp SINE Alu -16 297 1 1836 173 87 58 chrX 33496888 33497339 -129102591 + MLT1C LTR MaLR 4 467 0 1823 134 7 34 chrX 33497462 33497753 -129102177 + AluJo SINE Alu 1 283 -29 21 0 0 0 chrX 33498270 33498291 -129101639 + AT_rich Low_complexity Low_complexity 1 21 0 1495 264 41 45 chrX 33498294 33498786 -129101144 + MLT1J LTR MaLR 3 492 -19 1983 221 45 19 chrX 33499042 33499570 -129100360 + MLT1G1 LTR MaLR 1 595 0 372 103 0 0 chrX 33499833 33499891 -129100039 + (CA)n Simple_repeat Simple_repeat 2 59 0 2348 115 0 3 chrX 33500060 33500372 -129099558 - AluSx SINE Alu -1 311 1 1662 166 39 86 chrX 33500497 33500841 -129099089 + MLT1B LTR MaLR 1 325 -65 2510 67 0 0 chrX 33500841 33501138 -129098792 + AluY SINE Alu 2 298 -13 1662 166 39 86 chrX 33501138 33501202 -129098728 + MLT1B LTR MaLR 325 390 0 243 188 0 0 chrX 33501301 33501349 -129098581 + GA-rich Low_complexity Low_complexity 2 49 0 786 247 95 59 chrX 33501610 33502094 -129097836 - L2 LINE L2 -3 3310 2770 2836 209 22 57 chrX 33502155 33502939 -129096991 + L1MC4 LINE L1 7287 8042 0 2145 124 0 3 chrX 33502959 33503272 -129096658 + AluSx SINE Alu 1 312 0 201 190 17 35 chrX 33504665 33504723 -129095207 - MIR SINE MIR -69 139 83 1207 226 38 31 chrX 33504927 33505245 -129094685 - MER5C DNA MER1_type 0 324 5 2454 100 0 0 chrX 33505281 33505581 -129094349 + AluSq SINE Alu 1 300 -13 198 204 0 82 chrX 33505586 33505635 -129094295 + MIR SINE MIR 50 94 -114 548 228 158 19 chrX 33505938 33506096 -129093834 - MER5A DNA MER1_type 0 189 10 647 122 58 93 chrX 33506915 33507054 -129092876 + AluJb SINE Alu 1 134 -178 222 318 47 9 chrX 33507180 33507287 -129092643 - L2 LINE L2 -6 3307 3197 281 268 41 0 chrX 33507347 33507444 -129092486 + LTR16A LTR ERVL 91 191 -259 457 30 30 0 chrX 33508653 33508720 -129091210 + (CA)n Simple_repeat Simple_repeat 1 69 0 1648 144 8 38 chrX 33509122 33509266 -129090664 - AluJb SINE Alu -56 256 122 225 0 0 0 chrX 33509266 33509291 -129090639 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1648 144 8 38 chrX 33509291 33509410 -129090520 - AluJb SINE Alu -190 122 1 787 264 122 21 chrX 33509808 33510096 -129089834 - LTR16C LTR ERVL 0 491 175 198 246 177 46 chrX 33510522 33510652 -129089278 + MIR3 SINE MIR 34 180 -28 2649 139 39 31 chrX 33510715 33511234 -129088696 - L1MB5 LINE L1 0 6174 5652 1249 125 0 0 chrX 33511235 33511403 -129088527 - AluJb SINE Alu -10 302 135 365 140 64 12 chrX 33511403 33511574 -129088356 + (TA)n Simple_repeat Simple_repeat 1 180 0 208 137 39 0 chrX 33511605 33511656 -129088274 + (TA)n Simple_repeat Simple_repeat 1 53 0 2226 108 7 0 chrX 33511656 33511944 -129087986 - AluSq SINE Alu -21 292 3 1002 134 0 0 chrX 33511972 33512136 -129087794 + (TA)n Simple_repeat Simple_repeat 2 165 0 1993 134 3 0 chrX 33512136 33512419 -129087511 - AluSx SINE Alu -28 284 1 735 199 127 0 chrX 33512682 33512848 -129087082 + MIR SINE MIR 4 190 -72 198 258 34 0 chrX 33513677 33513736 -129086194 - MIR SINE MIR -97 165 105 349 197 16 13 chrX 33513801 33513922 -129086008 - MER5A DNA MER1_type -2 187 5 229 224 0 35 chrX 33514562 33514620 -129085310 - MIR3 SINE MIR -1 207 152 574 235 36 18 chrX 33514621 33514787 -129085143 + MER117 DNA MER1_type 3 171 -26 2125 185 41 35 chrX 33514917 33515409 -129084521 + Charlie4a DNA MER1_type 14 508 0 226 260 0 0 chrX 33515981 33516031 -129083899 - MIR3 SINE MIR -8 200 151 198 279 171 27 chrX 33516084 33516195 -129083735 - MIR SINE MIR -64 144 18 840 262 126 49 chrX 33516634 33517000 -129082930 - MLT1J2 LTR MaLR -25 425 32 2293 80 0 28 chrX 33517067 33517387 -129082543 + AluSg SINE Alu 1 312 0 479 154 135 0 chrX 33517597 33517701 -129082229 - L2 LINE L2 -1 3312 3195 1370 241 97 8 chrX 33517977 33518347 -129081583 - LTR16C LTR ERVL 0 491 89 1951 161 0 3 chrX 33518609 33518913 -129081017 + AluJb SINE Alu 1 303 -9 780 301 104 26 chrX 33518916 33519401 -129080529 + L2 LINE L2 2776 3313 0 509 196 42 42 chrX 33519827 33519967 -129079963 + MIR SINE MIR 114 252 -10 496 241 167 9 chrX 33521121 33521272 -129078658 + MER5A DNA MER1_type 3 183 -6 393 253 45 34 chrX 33522198 33522376 -129077554 - L1ME4a LINE L1 -2 6119 5940 529 226 147 74 chrX 33522482 33522672 -129077258 - MER63A DNA MER1_type -5 205 2 461 242 11 0 chrX 33522687 33522782 -129077148 + MER45 DNA AcHobo 1 96 -944 258 279 88 60 chrX 33522900 33523115 -129076815 + L2 LINE L2 2222 2442 -872 210 37 0 0 chrX 33523202 33523229 -129076701 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 1698 132 51 55 chrX 33523687 33523850 -129076080 - AluSx SINE Alu -2 310 147 1621 186 0 3 chrX 33523850 33524151 -129075779 - AluSp SINE Alu 0 313 14 1698 132 51 55 chrX 33524151 33524298 -129075632 - AluSx SINE Alu -165 147 1 668 122 0 0 chrX 33524487 33524585 -129075345 - AluS SINE Alu -214 99 2 296 164 16 0 chrX 33524586 33524647 -129075283 + MSTD LTR MaLR 327 388 -8 269 229 0 0 chrX 33524692 33524753 -129075177 + MER45 DNA AcHobo 1517 1577 -4 586 279 117 25 chrX 33524753 33525184 -129074746 + MLT1H LTR MaLR 67 590 0 2297 108 0 0 chrX 33525499 33525795 -129074135 + AluSx SINE Alu 1 296 -16 331 263 51 25 chrX 33525796 33525914 -129074016 + MER5A DNA MER1_type 66 186 -3 324 270 35 17 chrX 33525816 33525931 -129073999 - MER5A DNA MER1_type -72 117 1 * 787 259 177 10 chrX 33526365 33526670 -129073260 - LTR33A LTR ERVL -165 358 3 478 327 31 0 chrX 33526813 33526972 -129072958 + LTR16C LTR ERVL 87 250 -241 1018 272 43 76 chrX 33528259 33528723 -129071207 - MLT1J LTR MaLR -5 506 59 2345 146 3 5 chrX 33528723 33529114 -129070816 + MLT1B LTR MaLR 1 390 0 1018 272 43 76 chrX 33529114 33529160 -129070770 - MLT1J LTR MaLR -452 59 13 632 108 198 0 chrX 33529994 33530105 -129069825 - FLAM_C SINE Alu 0 133 1 534 183 58 8 chrX 33530125 33530245 -129069685 - AluJ SINE Alu -11 301 176 1287 118 0 54 chrX 33530264 33530468 -129069462 - AluJ SINE Alu -119 193 1 1871 108 39 105 chrX 33530475 33530807 -129069123 - AluSg SINE Alu 0 310 1 507 280 101 0 chrX 33530871 33531039 -129068891 + LTR50 LTR ERVL 1 185 -610 912 310 84 69 chrX 33531090 33531832 -129068098 - HAL1 LINE L1 -939 1568 816 312 177 9 17 chrX 33532003 33532069 -129067861 - MLT1A1 LTR MaLR 0 396 297 41 21 0 0 chrX 33532071 33532119 -129067811 + AT_rich Low_complexity Low_complexity 1 48 0 1952 182 0 0 chrX 33532119 33532421 -129067509 + AluJo SINE Alu 1 302 -10 1524 225 23 23 chrX 33532425 33532821 -129067109 + L1ME3A LINE L1 5771 6166 -4 1481 158 101 36 chrX 33532821 33533099 -129066831 + AluJb SINE Alu 1 296 -16 246 333 82 18 chrX 33734706 33734925 -128865005 - L2 LINE L2 -813 2501 2269 * 259 289 97 91 chrX 33734923 33735231 -128864699 + L3 LINE CR1 934 1243 -334 2315 105 3 0 chrX 33736088 33736383 -128863547 + AluSx SINE Alu 1 296 -16 1334 214 87 77 chrX 33737122 33737523 -128862407 - MLT2D LTR ERVL -8 406 2 2151 142 0 0 chrX 33737548 33737857 -128862073 - AluSx SINE Alu -3 309 1 2256 96 0 0 chrX 33738258 33738540 -128861390 - AluSx SINE Alu -17 295 14 2367 75 7 10 chrX 33738548 33738843 -128861087 + AluSq SINE Alu 1 294 -19 2195 87 26 29 chrX 33738848 33739158 -128860772 + AluSc SINE Alu 1 309 0 1044 269 51 20 chrX 33739513 33739904 -128860026 - LTR16A1 LTR ERVL 0 457 55 183 293 93 13 chrX 33740123 33740198 -128859732 - L3 LINE CR1 -405 1172 1092 2308 111 0 3 chrX 33740254 33740561 -128859369 - AluSx SINE Alu -6 306 1 1953 136 0 63 chrX 33740751 33741068 -128858862 - AluJb SINE Alu -15 297 1 840 218 50 44 chrX 33741076 33741170 -128858760 - L1MC5 LINE L1 -36 7925 7833 2015 130 33 3 chrX 33741170 33741469 -128858461 + AluJo SINE Alu 1 308 -4 840 218 50 44 chrX 33741469 33741695 -128858235 - L1MC5 LINE L1 -128 7833 7603 1316 101 0 6 chrX 33741702 33741871 -128858059 - AluSx SINE Alu -3 307 140 2217 112 3 3 chrX 33741895 33742190 -128857740 - AluSq SINE Alu -16 297 3 3824 61 32 104 chrX 33742192 33742359 -128857571 + LTR66 LTR ERVL 7 184 -426 2328 78 34 0 chrX 33742359 33742654 -128857276 + AluSc SINE Alu 4 308 -1 3824 61 32 104 chrX 33742654 33742980 -128856950 + LTR66 LTR ERVL 184 444 -166 459 0 0 0 chrX 33742980 33743031 -128856899 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3824 61 32 104 chrX 33743031 33743187 -128856743 + LTR66 LTR ERVL 444 610 0 1179 96 0 0 chrX 33743187 33743333 -128856597 - AluSx SINE Alu -166 146 1 981 204 47 50 chrX 33743337 33743603 -128856327 - L1MC5 LINE L1 -364 7597 7332 1009 149 4 115 chrX 33743603 33743767 -128856163 + MER3 DNA MER1_type 1 133 -76 2001 105 16 56 chrX 33743767 33743922 -128856008 - AluSx SINE Alu -20 292 153 2373 91 0 7 chrX 33743922 33744220 -128855710 - AluSp SINE Alu -17 296 1 2001 105 16 56 chrX 33744220 33744368 -128855562 - AluSx SINE Alu -159 153 1 1009 149 4 115 chrX 33744368 33744438 -128855492 + MER3 DNA MER1_type 133 209 0 981 204 47 50 chrX 33744438 33744462 -128855468 - L1MC5 LINE L1 -629 7332 7309 1858 66 70 4 chrX 33744462 33744704 -128855226 - AluY SINE Alu -17 294 37 981 204 47 50 chrX 33744704 33744755 -128855175 - L1MC5 LINE L1 -652 7309 7256 233 269 59 59 chrX 33744986 33745105 -128854825 - MIR3 SINE MIR -43 165 47 239 208 21 0 chrX 33745124 33745172 -128854758 - MIR SINE MIR -115 93 45 536 293 26 4 chrX 33745198 33745427 -128854503 - L1M4 LINE L1 -2261 3885 3652 715 67 0 0 chrX 33745427 33745517 -128854413 - 5S rRNA rRNA -31 90 1 259 308 35 49 chrX 33745521 33745569 -128854361 - L1M4 LINE L1 -2486 3660 3613 2245 97 33 3 chrX 33745569 33745869 -128854061 - AluSg SINE Alu -1 309 1 259 308 35 49 chrX 33745869 33745963 -128853967 - L1M4 LINE L1 -2533 3613 3520 264 273 0 0 chrX 33745967 33746022 -128853908 + polypyrimidine Low_complexity Low_complexity 3 57 0 375 317 60 27 chrX 33746047 33746230 -128853700 - L1M4 LINE L1 -2640 3506 3318 2154 128 20 0 chrX 33747062 33747359 -128852571 + AluSx SINE Alu 2 304 -8 373 163 105 0 chrX 33747372 33747458 -128852472 + L1MB3 LINE L1 5730 5824 -356 1342 118 11 0 chrX 33747459 33747637 -128852293 - AluJb SINE Alu -12 300 121 1939 144 11 3 chrX 33747673 33748020 -128851910 + L1MB3 LINE L1 5818 6167 -16 2447 93 3 0 chrX 33748023 33748334 -128851596 - AluSp SINE Alu -1 312 1 1190 115 13 0 chrX 33748337 33748493 -128851437 - AluSg/x SINE Alu -14 298 141 2269 110 0 0 chrX 33748542 33748834 -128851096 - AluSx SINE Alu -20 292 1 363 23 0 0 chrX 33749648 33749692 -128850238 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chrX 33750022 33750050 -128849880 + AT_rich Low_complexity Low_complexity 1 28 0 582 215 0 0 chrX 33750079 33750186 -128849744 - FLAM_C SINE Alu -35 108 2 327 245 21 32 chrX 33750186 33750280 -128849650 - L1ME1 LINE L1 -198 5968 5876 2095 132 3 0 chrX 33750292 33750580 -128849350 - AluSx SINE Alu -23 289 1 626 150 0 10 chrX 33750580 33750680 -128849250 - AluJb SINE Alu -177 135 37 2483 79 3 9 chrX 33750692 33751007 -128848923 - AluSq SINE Alu 0 313 1 374 119 92 73 chrX 33751023 33751055 -128848875 - L1MB8 LINE L1 0 6178 6148 2185 122 3 0 chrX 33751055 33751359 -128848571 + AluSx SINE Alu 1 305 -7 374 119 92 73 chrX 33751359 33751435 -128848495 - L1MB8 LINE L1 -30 6148 6068 1458 182 111 14 chrX 33751439 33751808 -128848122 - L1M4 LINE L1 -5457 1085 681 341 271 135 23 chrX 33751896 33752029 -128847901 + MLT1J LTR MaLR 33 180 -331 1871 146 8 35 chrX 33752041 33752417 -128847513 + pTR5 LTR ERV1 742 1107 -1331 1893 127 29 14 chrX 33752554 33752715 -128847215 - AluSx SINE Alu 0 302 134 2341 115 0 6 chrX 33752715 33753028 -128846902 - AluSx SINE Alu -1 311 1 1893 127 29 14 chrX 33753028 33753162 -128846768 - AluSx SINE Alu -168 134 3 1787 142 44 41 chrX 33753529 33753824 -128846106 + AluJo SINE Alu 3 298 -14 553 185 179 0 chrX 33754056 33754207 -128845723 + MER5A DNA MER1_type 4 181 -8 2465 97 3 0 chrX 33754531 33754840 -128845090 - AluSx SINE Alu -2 310 1 1919 131 44 14 chrX 33754840 33755137 -128844793 - AluJo SINE Alu -6 306 1 780 218 128 13 chrX 33755433 33755667 -128844263 - L1ME3A LINE L1 -20 6150 5890 2331 91 0 0 chrX 33755807 33756136 -128843794 - AluSq SINE Alu 0 329 1 2326 96 17 0 chrX 33756180 33756473 -128843457 + AluSx SINE Alu 1 298 -14 933 132 20 0 chrX 33756614 33756766 -128843164 + MER68 LTR ERV1 1 155 -407 2019 132 27 3 chrX 33756766 33757061 -128842869 - AluJo SINE Alu -10 302 1 2444 93 0 0 chrX 33757275 33757586 -128842344 + AluY SINE Alu 1 311 0 1439 130 5 5 chrX 33757612 33757819 -128842111 + AluJb SINE Alu 84 290 -22 588 230 133 6 chrX 33757819 33757984 -128841946 + HERVL LTR ERVL 2951 3136 -2518 2472 89 0 0 chrX 33758018 33758320 -128841610 + AluSx SINE Alu 9 310 -2 255 291 35 0 chrX 33758657 33758743 -128841187 + AluYb8 SINE Alu 119 207 -101 2657 56 3 0 chrX 33758769 33759075 -128840855 + AluSp SINE Alu 2 308 -5 204 125 0 0 chrX 33759082 33759114 -128840816 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2035 135 13 13 chrX 33759122 33759434 -128840496 + AluJo SINE Alu 1 312 0 2363 109 0 0 chrX 33759459 33759762 -128840168 + AluSx SINE Alu 1 303 -9 2364 136 66 11 chrX 33760402 33760844 -128839086 + L1MC1 LINE L1 5868 6333 0 277 139 47 12 chrX 33761772 33761858 -128838072 + CT-rich Low_complexity Low_complexity 2 90 0 2555 41 17 0 chrX 33762906 33763201 -128836729 + AluY SINE Alu 1 300 -11 268 141 141 113 chrX 33763336 33763425 -128836505 - L1MC5 LINE L1 -30 7931 7835 1767 132 71 25 chrX 33763425 33763705 -128836225 + AluJo SINE Alu 1 293 -19 268 141 141 113 chrX 33763705 33763757 -128836173 - L1MC5 LINE L1 -126 7835 7786 33 20 0 20 chrX 33763757 33763789 -128836141 + AT_rich Low_complexity Low_complexity 1 33 -17 2566 74 3 0 chrX 33763789 33764100 -128835830 - AluSp SINE Alu 0 313 2 33 20 0 20 chrX 33764100 33764118 -128835812 + AT_rich Low_complexity Low_complexity 33 50 0 352 215 72 25 chrX 33764142 33764263 -128835667 - MLT1H LTR MaLR -4 545 305 476 273 66 27 chrX 33764290 33764473 -128835457 - MLT1H LTR MaLR -258 291 102 2394 99 13 0 chrX 33764567 33764871 -128835059 - AluSx SINE Alu -4 308 1 192 77 0 0 chrX 33764918 33764944 -128834986 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1899 174 7 3 chrX 33764946 33765251 -128834679 - AluJo SINE Alu -6 306 1 28 29 0 0 chrX 33765263 33765298 -128834632 + AT_rich Low_complexity Low_complexity 1 35 0 2079 94 65 0 chrX 33765298 33765573 -128834357 - AluSp SINE Alu -20 293 1 2178 138 0 19 chrX 33765583 33765901 -128834029 - AluSx SINE Alu 0 312 1 258 32 0 0 chrX 33765908 33765939 -128833991 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chrX 33765938 33765958 -128833972 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 2160 92 10 44 chrX 33765958 33766107 -128833823 - AluSx SINE Alu -28 284 148 2444 92 3 0 chrX 33766107 33766413 -128833517 - AluSp SINE Alu -6 307 1 2160 92 10 44 chrX 33766413 33766557 -128833373 - AluSx SINE Alu -164 148 1 4224 126 10 27 chrX 33766564 33766843 -128833087 - L1MC1 LINE L1 -15 6318 6036 2040 156 0 6 chrX 33766843 33767157 -128832773 - AluJb SINE Alu 0 312 1 4224 126 10 27 chrX 33767157 33767578 -128832352 - L1MC1 LINE L1 -297 6036 5630 2324 98 0 3 chrX 33767661 33767957 -128831973 - AluSx SINE Alu -17 295 1 1214 146 0 0 chrX 33768078 33768256 -128831674 + AluSg/x SINE Alu 133 310 0 2544 69 3 7 chrX 33768459 33768764 -128831166 + AluSp SINE Alu 1 304 -9 2124 129 26 19 chrX 33769194 33769401 -128830529 - AluJb SINE Alu 0 312 101 1906 103 106 32 chrX 33769401 33769740 -128830190 - THE1B LTR MaLR 0 364 1 2124 129 26 19 chrX 33769740 33769842 -128830088 - AluJb SINE Alu -211 101 1 2505 60 6 19 chrX 33769849 33770164 -128829766 - AluY SINE Alu 0 311 1 194 0 39 0 chrX 33770165 33770191 -128829739 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2281 102 0 3 chrX 33770191 33770486 -128829444 - AluSx SINE Alu -18 294 1 1886 133 20 20 chrX 33770559 33770859 -128829071 - AluJo SINE Alu -12 300 1 1795 161 7 0 chrX 33770910 33771184 -128828746 + AluJb SINE Alu 1 276 -36 537 265 32 124 chrX 33771184 33771844 -128828086 + LTR38B LTR ERV1 12 610 0 2423 102 0 0 chrX 33771922 33772226 -128827704 - AluSx SINE Alu -8 304 1 2270 115 3 6 chrX 33772649 33772993 -128826937 - AluSx SINE Alu 0 343 1 3137 124 51 42 chrX 33773029 33773372 -128826558 - MER21B LTR ERV1 -1 862 511 2409 55 28 3 chrX 33773372 33773661 -128826269 + AluY SINE Alu 1 296 -15 3137 124 51 42 chrX 33773661 33773867 -128826063 - MER21B LTR ERV1 -352 511 308 2253 95 3 41 chrX 33773870 33774186 -128825744 - AluSp SINE Alu -9 304 1 362 139 0 28 chrX 33774255 33774327 -128825603 + MER21A LTR ERV1 1 70 -861 2199 118 0 7 chrX 33774373 33774702 -128825228 + AluSx SINE Alu 1 327 0 434 117 115 81 chrX 33774770 33774880 -128825050 + MER21A LTR ERV1 70 166 -541 1543 158 196 22 chrX 33774887 33775249 -128824681 - MSTA LTR MaLR 0 428 4 277 26 0 0 chrX 33775287 33775325 -128824605 + MSTB1 LTR MaLR 350 387 -45 * 295 111 0 111 chrX 33775324 33775356 -128824574 + MER39 LTR ERV1 281 304 -403 2339 97 3 3 chrX 33775356 33775656 -128824274 + AluSc SINE Alu 1 300 -9 295 111 0 111 chrX 33775656 33775686 -128824244 + MER39 LTR ERV1 304 336 -371 1656 157 50 4 chrX 33775706 33775968 -128823962 + AluJb SINE Alu 1 274 -38 186 255 0 0 chrX 33775973 33776024 -128823906 + GA-rich Low_complexity Low_complexity 2 52 0 744 88 10 78 chrX 33776024 33776216 -128823714 + (GGAAA)n Simple_repeat Simple_repeat 1 179 0 315 130 0 37 chrX 33776218 33776272 -128823658 + (GAAAA)n Simple_repeat Simple_repeat 4 55 0 2450 150 17 37 chrX 33776272 33776422 -128823508 + MER65C LTR ERV1 11 162 -299 2296 112 3 6 chrX 33776422 33776736 -128823194 - AluSq SINE Alu 0 313 1 2450 150 17 37 chrX 33776736 33777045 -128822885 + MER65C LTR ERV1 162 461 0 1297 193 15 45 chrX 33777045 33777181 -128822749 + MER21A LTR ERV1 203 329 -602 2498 88 3 0 chrX 33777181 33777487 -128822443 - AluSx SINE Alu -5 307 1 1297 193 15 45 chrX 33777487 33777615 -128822315 + MER21A LTR ERV1 329 459 -472 1646 149 0 4 chrX 33777629 33777870 -128822060 + AluJo SINE Alu 1 240 -72 450 81 68 0 chrX 33777897 33777971 -128821959 + L1MB3 LINE L1 6096 6174 -9 2404 82 7 23 chrX 33777985 33778291 -128821639 + AluSc SINE Alu 1 301 -8 874 249 185 25 chrX 33778325 33778719 -128821211 + MLT1H LTR MaLR 40 496 -53 940 110 0 8 chrX 33778719 33778846 -128821084 + AluJo SINE Alu 13 138 -174 1904 138 7 7 chrX 33778846 33779135 -128820795 + AluJo SINE Alu 13 301 -11 251 220 0 0 chrX 33779136 33779195 -128820735 + MLT1H LTR MaLR 487 545 -4 1809 93 86 32 chrX 33779314 33779593 -128820337 - AluSx SINE Alu -18 294 1 247 288 0 27 chrX 33780550 33780623 -128819307 + (CATG)n Simple_repeat Simple_repeat 1 71 0 3492 176 46 70 chrX 33780623 33780694 -128819236 - MER69 DNA AcHobo -2 2524 2453 1018 110 0 22 chrX 33780694 33780830 -128819100 + FLAM_C SINE Alu 1 133 0 3492 176 46 70 chrX 33780830 33781122 -128818808 - MER69 DNA AcHobo -73 2453 2155 2368 92 0 13 chrX 33781122 33781436 -128818494 + AluSx SINE Alu 1 310 -2 3492 176 46 70 chrX 33781436 33781964 -128817966 - MER69 DNA AcHobo -371 2155 1654 763 191 303 68 chrX 33781997 33782049 -128817881 - MER69 DNA AcHobo -1834 692 653 1855 160 3 25 chrX 33782049 33782368 -128817562 - AluJo SINE Alu 0 312 1 763 191 303 68 chrX 33782368 33782609 -128817321 - MER69 DNA AcHobo -1873 653 330 253 224 0 0 chrX 33782719 33782768 -128817162 - MER69 DNA AcHobo -2457 69 21 1878 132 14 0 chrX 33782795 33783075 -128816855 - AluSx SINE Alu -13 299 16 2558 58 3 3 chrX 33783076 33783385 -128816545 - AluSp SINE Alu -4 309 1 2206 89 7 0 chrX 33783416 33783728 -128816202 + AluSp SINE Alu 1 314 0 2139 98 0 58 chrX 33783735 33784063 -128815867 + AluSq SINE Alu 1 309 -4 1161 111 32 5 chrX 33784064 33784253 -128815677 + AluSg/x SINE Alu 117 310 0 2330 84 3 0 chrX 33785558 33785865 -128814065 + AluSx SINE Alu 1 308 0 879 127 8 8 chrX 33785877 33786011 -128813919 + AluJo SINE Alu 1 134 -178 845 82 65 80 chrX 33786022 33786205 -128813725 + L1MA2 LINE L1 5938 6127 -177 1756 143 0 39 chrX 33786205 33786491 -128813439 + AluJb SINE Alu 18 292 -20 2205 117 3 3 chrX 33786551 33786860 -128813070 - AluSx SINE Alu -3 309 1 2430 172 21 28 chrX 33786867 33787332 -128812598 - L1MB5 LINE L1 0 6174 5713 2474 86 0 0 chrX 33787791 33788095 -128811835 - AluSx SINE Alu -8 304 1 2215 108 0 16 chrX 33788766 33789082 -128810848 + AluSx SINE Alu 1 311 -1 2285 75 0 0 chrX 33789142 33789447 -128810483 + AluSg SINE Alu 1 305 0 895 143 0 0 chrX 33789508 33789634 -128810296 + AluSq/x SINE Alu 1 126 -186 2410 67 0 3 chrX 33790398 33790695 -128809235 + AluY SINE Alu 2 297 -14 2355 109 0 0 chrX 33790897 33791209 -128808721 + AluSx SINE Alu 1 312 0 211 262 0 0 chrX 33791370 33791412 -128808518 + MIR SINE MIR 21 62 -200 2478 78 10 0 chrX 33791661 33791968 -128807962 + AluSx SINE Alu 1 310 -2 227 274 98 49 chrX 33791998 33792100 -128807830 + MIR SINE MIR 80 186 -76 1892 118 4 0 chrX 33793368 33793630 -128806300 - AluSg SINE Alu -47 263 1 1136 60 0 0 chrX 33793664 33793797 -128806133 - AluSq/x SINE Alu -179 133 1 2592 77 0 0 chrX 33794040 33794373 -128805557 + AluSp SINE Alu 1 333 0 2061 80 13 67 chrX 33794516 33794829 -128805101 - AluSx SINE Alu -16 296 1 2603 47 0 0 chrX 33795155 33795453 -128804477 - AluY SINE Alu -13 298 1 2279 108 14 0 chrX 33795538 33795835 -128804095 - AluSx SINE Alu -11 301 1 2550 56 0 3 chrX 33796215 33796519 -128803411 - AluSp SINE Alu -10 303 1 2245 91 0 3 chrX 33797091 33797405 -128802525 - AluSq SINE Alu 0 313 1 2450 60 40 0 chrX 33797794 33798094 -128801836 - AluSp SINE Alu -1 312 1 2311 99 0 10 chrX 33798139 33798451 -128801479 - AluSq SINE Alu -4 309 1 2362 94 0 0 chrX 33798649 33798956 -128800974 + AluSx SINE Alu 5 311 -1 2003 77 48 11 chrX 33799025 33799321 -128800609 + AluY SINE Alu 1 306 0 2097 103 21 0 chrX 33800041 33800331 -128799599 - AluSx SINE Alu -16 296 1 225 238 0 0 chrX 33800769 33800811 -128799119 + HsTC2 DNA Tc2 1859 1900 0 2329 91 7 0 chrX 33803455 33803763 -128796167 + AluSx SINE Alu 1 310 -2 183 167 0 0 chrX 33804254 33804296 -128795634 + A-rich Low_complexity Low_complexity 1 42 0 306 0 0 0 chrX 33806067 33806101 -128793829 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 229 208 83 0 chrX 33806190 33806238 -128793692 - MARNA DNA Mariner -252 334 283 2335 86 3 13 chrX 33806571 33806875 -128793055 - AluSp SINE Alu -12 301 1 674 261 44 0 chrX 33806978 33807158 -128792772 + MER5A DNA MER1_type 2 189 0 189 94 0 0 chrX 33807963 33807995 -128791935 + (A)n Simple_repeat Simple_repeat 1 32 0 2229 116 0 0 chrX 33808098 33808401 -128791529 - AluSq SINE Alu -10 303 1 461 205 251 67 chrX 33809107 33809204 -128790726 - MIR SINE MIR -2 260 182 1954 93 100 0 chrX 33809204 33809484 -128790446 - AluY SINE Alu -3 308 1 461 205 251 67 chrX 33809484 33809606 -128790324 - MIR SINE MIR -80 182 19 1958 143 73 55 chrX 33810043 33810324 -128789606 + L1MB5 LINE L1 5768 6060 -114 2505 52 0 0 chrX 33810324 33810613 -128789317 + AluY SINE Alu 5 293 -18 1958 143 73 55 chrX 33810613 33810730 -128789200 + L1MB5 LINE L1 6060 6173 -1 279 174 23 105 chrX 33811070 33811156 -128788774 + L2 LINE L2 3234 3312 -1 736 168 15 53 chrX 33811353 33811484 -128788446 - FLAM_C SINE Alu -15 128 3 3023 201 46 8 chrX 33812148 33812759 -128787171 - MER82 DNA MER2_type -8 645 12 2240 110 3 7 chrX 33813666 33813967 -128785963 - AluSx SINE Alu -12 300 1 1720 158 17 30 chrX 33814102 33814399 -128785531 - AluJo SINE Alu -19 293 1 2321 89 3 0 chrX 33814583 33814886 -128785044 + AluSq SINE Alu 1 304 -9 2021 92 43 0 chrX 33815397 33815678 -128784252 - AluSc SINE Alu -16 293 1 311 308 37 0 chrX 33815815 33815922 -128784008 + L2 LINE L2 1752 1862 -1452 736 283 201 48 chrX 33815983 33816793 -128783137 + L2 LINE L2 2037 2970 -344 995 237 49 89 chrX 33816992 33817043 -128782887 + MER46C DNA MER2_type 1 53 -285 2382 78 0 7 chrX 33817043 33817338 -128782592 - AluSg SINE Alu -17 293 1 995 237 49 89 chrX 33817338 33817360 -128782570 + MER46C DNA MER2_type 53 74 -264 2181 83 38 3 chrX 33817360 33817648 -128782282 - AluSx SINE Alu -14 298 1 995 237 49 89 chrX 33817648 33817923 -128782007 + MER46C DNA MER2_type 74 336 -2 1787 173 20 10 chrX 33818313 33818614 -128781316 - AluJo SINE Alu -8 304 1 269 419 0 7 chrX 33818701 33818837 -128781093 - MER5A DNA MER1_type -9 180 46 1797 162 0 14 chrX 33820422 33820712 -128779218 - AluJb SINE Alu -22 290 5 2062 102 9 65 chrX 33821235 33821558 -128778372 - AluSx SINE Alu -6 306 2 445 283 151 23 chrX 33822730 33822949 -128776981 - MIR SINE MIR 0 262 16 851 62 0 18 chrX 33823833 33823946 -128775984 - L1PA6 LINE L1 -3 6151 6041 485 165 0 24 chrX 33824659 33824743 -128775187 - MER58B DNA MER1_type -1 340 259 1608 126 103 4 chrX 33824743 33825004 -128774926 - MER47A DNA MER2_type 0 366 80 831 206 67 6 chrX 33825004 33825169 -128774761 - FAM SINE Alu 0 175 1 22 0 0 0 chrX 33825819 33825841 -128774089 + AT_rich Low_complexity Low_complexity 1 22 0 6692 54 14 32 chrX 33825844 33826752 -128773178 - SVA Other Other -3 1383 492 1626 197 13 22 chrX 33827029 33827344 -128772586 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 33827359 33827382 -128772548 + (GGAAA)n Simple_repeat Simple_repeat 2 24 0 733 242 102 72 chrX 33828730 33829312 -128770618 + L1MC4 LINE L1 7302 7910 -132 2362 75 0 16 chrX 33829312 33829653 -128770277 + AluY SINE Alu 1 311 0 733 242 102 72 chrX 33829653 33829789 -128770141 + L1MC4 LINE L1 7910 8041 -1 2105 112 31 0 chrX 33829995 33830282 -128769648 + AluSx SINE Alu 1 296 -16 970 223 92 121 chrX 33830827 33830935 -128768995 + L1MC5 LINE L1 7099 7209 -752 2224 109 16 3 chrX 33830935 33831239 -128768691 + AluSx SINE Alu 1 308 -4 1926 90 33 43 chrX 33831239 33831540 -128768390 + AluSx SINE Alu 1 298 -14 970 223 92 121 chrX 33831540 33832128 -128767802 + L1MC5 LINE L1 7208 7770 -191 2419 86 6 6 chrX 33832128 33832441 -128767489 + AluSq SINE Alu 1 313 0 970 223 92 121 chrX 33832441 33832585 -128767345 + L1MC5 LINE L1 7770 7917 -44 398 266 50 58 chrX 33833263 33833402 -128766528 + MIR SINE MIR 41 178 -84 1429 159 169 0 chrX 33833448 33833744 -128766186 - MER7A DNA MER2_type -1 345 2 995 202 0 34 chrX 33833748 33833981 -128765949 + L1MB3 LINE L1 4900 5124 -1022 1259 171 95 21 chrX 33833986 33834321 -128765609 + L1MB3 LINE L1 5225 5534 -649 2326 116 0 0 chrX 33834321 33834631 -128765299 + AluSx SINE Alu 1 310 -2 1259 171 95 21 chrX 33834631 33835144 -128764786 + L1MB3 LINE L1 5534 6182 -1 2268 116 0 0 chrX 33836337 33836630 -128763300 - AluSx SINE Alu -19 293 1 1056 141 0 0 chrX 33836761 33836910 -128763020 - AluJb SINE Alu -14 298 150 202 323 73 0 chrX 33838366 33838462 -128761468 + MIR SINE MIR 108 210 -52 2224 70 18 80 chrX 33838590 33838917 -128761013 + AluSq SINE Alu 1 307 -6 2403 94 10 0 chrX 33839105 33839414 -128760516 - AluSx SINE Alu 0 312 1 1688 156 3 20 chrX 33840296 33840591 -128759339 - AluJb SINE Alu -22 290 1 1585 119 8 27 chrX 33842527 33842787 -128757143 + MER1B DNA MER1_type 85 339 0 984 210 22 0 chrX 33842802 33842983 -128756947 + MER5A DNA MER1_type 3 187 -2 2326 102 0 0 chrX 33842984 33843287 -128756643 + AluSc SINE Alu 1 303 -6 361 325 0 17 chrX 33843411 33843531 -128756399 + L2 LINE L2 3189 3306 -7 353 304 78 9 chrX 33843535 33843650 -128756280 + L2 LINE L2 3181 3303 -10 2324 93 3 0 chrX 33843744 33844046 -128755884 - AluSp SINE Alu -10 303 1 843 208 19 0 chrX 33844486 33844640 -128755290 - FRAM SINE Alu -22 154 1 1778 156 3 7 chrX 33844647 33844930 -128755000 - AluJb SINE Alu -22 290 9 840 310 89 43 chrX 33844940 33845613 -128754317 + L2 LINE L2 2590 3298 -15 258 273 0 0 chrX 33845787 33845864 -128754066 - Charlie8 DNA MER1_type 0 2417 2341 186 313 54 62 chrX 33845983 33846095 -128753835 - L2 LINE L2 -188 3084 2974 * 540 365 60 0 chrX 33846076 33846309 -128753621 - L2 LINE L2 -493 2821 2575 314 125 42 83 chrX 33846918 33846969 -128752961 - MER46C DNA MER2_type -6 332 283 2372 95 0 3 chrX 33846969 33847273 -128752657 - AluSq SINE Alu -10 303 1 314 125 42 83 chrX 33847273 33847293 -128752637 - MER46C DNA MER2_type -55 283 264 21 0 0 0 chrX 33850468 33850489 -128749441 + AT_rich Low_complexity Low_complexity 1 21 0 836 190 0 0 chrX 33850507 33850649 -128749281 - FRAM SINE Alu -39 137 1 1407 207 109 41 chrX 33850747 33851186 -128748744 + L1ME1 LINE L1 5627 6104 -62 2139 96 3 23 chrX 33851186 33851488 -128748442 + AluSx SINE Alu 1 296 -16 1407 207 109 41 chrX 33851488 33851535 -128748395 + L1ME1 LINE L1 6104 6146 -20 450 238 26 79 chrX 33852728 33852993 -128746937 - L1MC5 LINE L1 -50 7911 7661 200 222 0 19 chrX 33854121 33854175 -128745755 + A-rich Low_complexity Low_complexity 2 54 0 207 125 0 0 chrX 33854477 33854517 -128745413 + (A)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chrX 33855025 33855048 -128744882 + AT_rich Low_complexity Low_complexity 1 23 0 2348 90 0 0 chrX 33855082 33855381 -128744549 + AluSq SINE Alu 3 301 -12 31 26 0 0 chrX 33855512 33855550 -128744380 + AT_rich Low_complexity Low_complexity 1 38 0 1698 144 25 21 chrX 33855933 33856217 -128743713 - AluJb SINE Alu -14 298 14 1293 166 36 61 chrX 33856460 33856570 -128743360 + AluJo SINE Alu 37 148 -164 2322 102 0 6 chrX 33856570 33856883 -128743047 + AluSx SINE Alu 1 311 -1 1293 166 36 61 chrX 33856883 33857050 -128742880 + AluJo SINE Alu 148 307 -5 405 259 104 0 chrX 33857060 33857195 -128742735 + MIR SINE MIR 71 219 -43 193 246 0 16 chrX 33857407 33857468 -128742462 + MIR SINE MIR 160 219 -43 459 329 93 14 chrX 33857566 33857782 -128742148 - MIR SINE MIR -10 252 20 282 287 66 0 chrX 33858247 33858369 -128741561 + HAL1 LINE L1 11 140 -2367 5058 136 46 42 chrX 33858715 33859902 -128740028 + L1M2 LINE L1 4293 5466 -745 2288 93 3 13 chrX 33859922 33860234 -128739696 + AluSq SINE Alu 5 313 0 2571 214 124 31 chrX 33860243 33861273 -128738657 + L1MC4 LINE L1 6772 7897 -145 236 242 0 15 chrX 33862195 33862261 -128737669 + L1MC4 LINE L1 6463 6527 -1515 1277 74 6 0 chrX 33862261 33862423 -128737507 + AluSg/x SINE Alu 132 294 -16 1396 214 80 36 chrX 33862423 33862774 -128737156 + L1MC4 LINE L1 6527 6861 -1181 1870 157 3 20 chrX 33862774 33863080 -128736850 - AluJo SINE Alu -11 301 1 1396 214 80 36 chrX 33863080 33863324 -128736606 + L1MC4 LINE L1 6861 7093 -949 1977 117 46 0 chrX 33863324 33863606 -128736324 - AluSx SINE Alu -17 295 1 1396 214 80 36 chrX 33863606 33863932 -128735998 + L1MC4 LINE L1 7093 7647 -395 833 207 56 95 chrX 33863934 33864096 -128735834 + MER2 DNA MER2_type 1 168 -177 1924 138 80 12 chrX 33864096 33864422 -128735508 - MER7A DNA MER2_type 0 346 1 833 207 56 95 chrX 33864422 33864617 -128735313 + MER2 DNA MER2_type 168 344 -1 286 314 105 16 chrX 33864635 33864826 -128735104 + L1MC4 LINE L1 7680 7887 -155 412 279 213 15 chrX 33865038 33865579 -128734351 + HAL1 LINE L1 1016 1663 -844 317 298 118 22 chrX 33865729 33865907 -128734023 + HAL1 LINE L1 2219 2413 -94 1142 225 102 19 chrX 33865943 33866258 -128733672 - MER58B DNA MER1_type 0 341 1 1013 181 0 11 chrX 33866955 33867132 -128732798 - FRAM SINE Alu -2 174 1 1076 205 76 9 chrX 33867188 33867412 -128732518 - MER8 DNA MER2_type 0 239 1 190 350 90 50 chrX 33867578 33867678 -128732252 + L2 LINE L2 3137 3240 -32 237 329 26 0 chrX 33867957 33868033 -128731897 + L2 LINE L2 3234 3311 -2 282 180 0 33 chrX 33868460 33868521 -128731409 - Tigger4(Zombi) DNA MER2_type 0 2731 2673 226 132 0 26 chrX 33868499 33868537 -128731393 - Tigger4(Zombi) DNA MER2_type -2694 37 1 * 2162 103 20 3 chrX 33868563 33868855 -128731075 + AluSq SINE Alu 1 297 -16 25 0 0 0 chrX 33868871 33868896 -128731034 + AT_rich Low_complexity Low_complexity 1 25 0 766 169 8 0 chrX 33869044 33869174 -128730756 + FLAM_C SINE Alu 1 131 -2 1640 181 48 10 chrX 33869523 33869816 -128730114 + AluJb SINE Alu 1 304 -8 198 278 14 42 chrX 33872632 33872704 -128727226 - L2 LINE L2 0 3272 3203 1820 130 0 0 chrX 33872793 33873046 -128726884 + AluSx SINE Alu 1 253 -59 248 382 123 20 chrX 33873503 33873707 -128726223 + MIR SINE MIR 20 244 -18 2212 97 17 0 chrX 33874149 33874448 -128725482 + AluSc SINE Alu 1 304 -5 1725 149 64 4 chrX 33874568 33874849 -128725081 - AluJb SINE Alu -14 298 1 770 110 8 36 chrX 33876442 33876683 -128723247 + AluJo SINE Alu 13 305 -7 2332 92 13 0 chrX 33876683 33876989 -128722941 + AluSx SINE Alu 1 310 -2 476 209 37 105 chrX 33876992 33877183 -128722747 - L1MC4 LINE L1 -52 7990 7813 381 217 250 53 chrX 33877217 33877369 -128722561 - MER20 DNA MER1_type 0 219 38 629 234 134 19 chrX 33877395 33877664 -128722266 - L1MC4 LINE L1 -295 7747 7448 666 138 60 0 chrX 33877666 33877782 -128722148 - L1MC4 LINE L1 -697 7345 7223 213 39 0 0 chrX 33877982 33878008 -128721922 + (TA)n Simple_repeat Simple_repeat 1 26 0 411 172 137 13 chrX 33878319 33878457 -128721473 - L1MB7 LINE L1 -26 6148 5995 * 502 152 59 59 chrX 33878451 33878495 -128721435 - L1MB8 LINE L1 -204 6775 6732 2056 120 20 0 chrX 33878495 33878795 -128721135 + AluSx SINE Alu 1 306 -6 502 152 59 59 chrX 33878795 33879230 -128720700 - L1MB8 LINE L1 -247 6732 6094 * 1123 216 22 11 chrX 33879206 33879484 -128720446 - L1MB8 LINE L1 -1982 4975 4695 322 89 0 0 chrX 33879530 33879575 -128720355 + Charlie3 DNA MER1_type 37 81 -2629 * 564 78 0 13 chrX 33879574 33879651 -128720279 + Charlie3 DNA MER1_type 2631 2706 -4 1920 244 114 42 chrX 33879695 33880700 -128719230 - L1MB8 LINE L1 -4615 2344 1259 2604 300 41 32 chrX 33881336 33882272 -128717658 - L1MB8 LINE L1 -5914 945 2 754 205 76 5 chrX 33882338 33882523 -128717407 - L1MC4 LINE L1 -1025 7017 6820 181 120 0 0 chrX 33883543 33883568 -128716362 - MIR SINE MIR -26 236 212 248 283 33 0 chrX 33883571 33883631 -128716299 - MIR SINE MIR -156 106 45 193 333 133 28 chrX 33886241 33886311 -128713619 - MIR3 SINE MIR -6 202 141 2231 104 7 0 chrX 33886311 33886619 -128713311 - AluSx SINE Alu -2 310 1 193 333 133 28 chrX 33886619 33886728 -128713202 - MIR3 SINE MIR -67 141 4 2380 71 0 7 chrX 33888311 33888606 -128711324 + AluSx SINE Alu 1 293 -19 331 269 19 0 chrX 33888652 33888756 -128711174 - L1ME LINE L1 -420 5701 5596 185 184 53 0 chrX 33889426 33889464 -128710466 + MIR3 SINE MIR 164 203 -5 372 192 0 27 chrX 33890232 33890305 -128709625 + MER20 DNA MER1_type 67 137 -82 778 144 2 14 chrX 33890352 33890492 -128709438 + MSTD LTR MaLR 277 393 -3 2320 103 3 0 chrX 33890566 33890866 -128709064 + AluSx SINE Alu 3 303 -9 21 0 0 0 chrX 33891120 33891141 -128708789 + AT_rich Low_complexity Low_complexity 1 21 0 634 184 152 20 chrX 33891190 33891434 -128708496 + L1MC5 LINE L1 7452 7727 -234 376 240 72 72 chrX 33891447 33891816 -128708114 + L1ME LINE L1 5153 5516 -654 272 328 42 34 chrX 33892427 33892546 -128707384 - MER5A DNA MER1_type -9 180 61 750 257 121 52 chrX 33892655 33893060 -128706870 - L1ME3A LINE L1 -207 5963 5531 1100 110 7 0 chrX 33893943 33894097 -128705833 + AluSq SINE Alu 147 301 -12 266 222 159 8 chrX 33895412 33895538 -128704392 - MIR SINE MIR -13 249 105 755 117 25 17 chrX 33895830 33895950 -128703980 - FLAM_C SINE Alu -14 129 9 354 222 148 0 chrX 33895993 33896101 -128703829 - MER5C DNA MER1_type -200 124 1 2098 118 16 10 chrX 33898633 33898939 -128700991 - AluSq SINE Alu -5 308 1 33 0 0 0 chrX 33900727 33900760 -128699170 + AT_rich Low_complexity Low_complexity 1 33 0 2048 133 0 7 chrX 33901856 33902165 -128697765 + AluSx SINE Alu 1 307 -5 2270 78 0 0 chrX 33902387 33902668 -128697262 + AluSx SINE Alu 1 281 -31 273 234 13 13 chrX 33902719 33902796 -128697134 + HsTC2 DNA Tc2 3 79 -1819 424 309 64 60 chrX 33902834 33903099 -128696831 - L1MEd LINE L1 -5494 625 360 338 243 0 0 chrX 33903143 33903217 -128696713 + HsTC2 DNA Tc2 1824 1897 -1 210 287 53 53 chrX 33903218 33903312 -128696618 - MIR SINE MIR -160 102 9 1643 95 44 5 chrX 33904363 33904956 -128694974 + L1MA3 LINE L1 5636 6300 -5 26 50 0 0 chrX 33904960 33905000 -128694930 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrX 33905547 33905569 -128694361 + AT_rich Low_complexity Low_complexity 1 22 0 1455 157 44 68 chrX 33905569 33905714 -128694216 + AluJb SINE Alu 1 137 -175 2651 55 0 0 chrX 33905714 33906021 -128693909 + AluSq SINE Alu 1 307 -6 1455 157 44 68 chrX 33906021 33906169 -128693761 + AluJb SINE Alu 137 287 -25 35 24 0 0 chrX 33906951 33906993 -128692937 + AT_rich Low_complexity Low_complexity 1 42 0 2327 103 0 0 chrX 33907293 33907603 -128692327 + AluSx SINE Alu 3 312 0 1856 76 13 0 chrX 33907603 33907839 -128692091 + AluSc SINE Alu 71 309 0 23 0 0 0 chrX 33908026 33908049 -128691881 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 33908089 33908110 -128691820 + AT_rich Low_complexity Low_complexity 1 21 0 1837 168 30 30 chrX 33909425 33909764 -128690166 - MER2 DNA MER2_type -6 339 1 483 259 153 23 chrX 33909793 33910009 -128689921 - MIR SINE MIR -17 245 2 355 283 177 27 chrX 33910839 33911320 -128688610 - L1ME4a LINE L1 -54 6067 5515 349 220 0 22 chrX 33912476 33912567 -128687363 + L1M4 LINE L1 3034 3122 -3024 333 0 0 0 chrX 33912597 33912634 -128687296 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 360 0 0 0 chrX 33912633 33912673 -128687257 + (TG)n Simple_repeat Simple_repeat 2 41 0 462 272 88 28 chrX 33912755 33912942 -128686988 + L1M4 LINE L1 3283 3457 -2689 2181 99 0 10 chrX 33912942 33913235 -128686695 + AluSg SINE Alu 1 290 -20 462 272 88 28 chrX 33913235 33913411 -128686519 + L1M4 LINE L1 3457 3668 -2478 668 270 28 17 chrX 33913419 33913597 -128686333 - MIR SINE MIR -63 199 20 256 182 0 0 chrX 33913606 33913672 -128686258 - L1MA7 LINE L1 -2 6289 6224 2158 100 3 3 chrX 33913858 33914149 -128685781 - AluSg SINE Alu -15 295 5 2191 127 0 0 chrX 33914256 33914556 -128685374 - AluSx SINE Alu -12 300 1 2142 152 159 36 chrX 33915201 33915867 -128684063 + LTR1B LTR ERV1 37 826 0 679 207 96 0 chrX 33916038 33916173 -128683757 + MLT1B LTR MaLR 187 334 -56 553 270 22 56 chrX 33916462 33916640 -128683290 + MER5B DNA MER1_type 1 172 -6 289 236 164 68 chrX 33916812 33917032 -128682898 - MIR SINE MIR -2 260 20 2018 118 0 33 chrX 33917171 33917476 -128682454 + AluSx SINE Alu 4 298 -14 2319 78 0 3 chrX 33917519 33917813 -128682117 + AluY SINE Alu 1 293 -18 490 214 164 6 chrX 33917978 33918137 -128681793 - MIR SINE MIR -76 186 3 258 218 57 76 chrX 33918146 33918310 -128681620 + L1ME LINE L1 5391 5553 -613 1294 81 0 0 chrX 33918476 33918637 -128681293 - AluSg/x SINE Alu -19 291 131 647 165 87 24 chrX 33918958 33919085 -128680845 - AluJo SINE Alu -176 136 2 306 316 35 35 chrX 33919267 33919438 -128680492 + L2 LINE L2 1890 2060 -1254 2186 131 58 53 chrX 33919795 33920160 -128679770 + L1MB3 LINE L1 5765 6127 -56 2281 104 3 0 chrX 33920160 33920457 -128679473 + AluSx SINE Alu 1 298 -14 2219 82 61 0 chrX 33920458 33920751 -128679179 + AluY SINE Alu 1 311 0 2186 131 58 53 chrX 33920751 33920796 -128679134 + L1MB3 LINE L1 6126 6179 -4 371 324 7 34 chrX 33922577 33922725 -128677205 - L2 LINE L2 -2 3311 3168 2368 107 0 0 chrX 33923066 33923376 -128676554 - AluSg SINE Alu 0 310 1 835 130 70 32 chrX 33923381 33923536 -128676394 - Tigger2 DNA MER2_type -65 2653 2488 2086 113 10 19 chrX 33923536 33923846 -128676084 + AluSx SINE Alu 6 312 0 835 130 70 32 chrX 33923846 33923875 -128676055 - Tigger2 DNA MER2_type -230 2488 2462 4145 117 56 55 chrX 33923929 33924681 -128675249 - Tigger2 DNA MER2_type -1964 754 2 2247 93 7 0 chrX 33924818 33925120 -128674810 + AluY SINE Alu 1 304 -7 254 310 84 45 chrX 33925751 33925906 -128674024 - MIR SINE MIR -18 244 84 248 280 116 89 chrX 33926132 33926172 -128673758 + L2 LINE L2 2713 2750 -564 2391 83 3 0 chrX 33926172 33926472 -128673458 + AluSp SINE Alu 1 301 -12 248 280 116 89 chrX 33926472 33926656 -128673274 + L2 LINE L2 2750 2943 -371 248 373 109 18 chrX 33926777 33926887 -128673043 + L2 LINE L2 3126 3245 -27 1683 173 85 51 chrX 33926891 33927244 -128672686 - MLT1A1 LTR MaLR 0 365 1 405 231 322 25 chrX 33927645 33927844 -128672086 - MIR SINE MIR -1 261 4 759 181 0 0 chrX 33928085 33928201 -128671729 + FLAM_A SINE Alu 1 116 -17 3888 196 119 24 chrX 33929026 33930997 -128668933 + L1MB4 LINE L1 11 2182 -4777 1083 97 0 0 chrX 33930999 33931133 -128668797 + AluSq/x SINE Alu 2 135 -178 2377 97 3 0 chrX 33931133 33931442 -128668488 + AluSg SINE Alu 1 310 0 2353 97 3 3 chrX 33931486 33931794 -128668136 + AluSx SINE Alu 1 308 -4 3759 159 62 18 chrX 33932009 33932980 -128666950 + L1MB4 LINE L1 5789 6791 -200 1912 127 7 20 chrX 33933946 33934238 -128665692 + AluJb SINE Alu 1 288 -24 2279 103 0 3 chrX 33935223 33935524 -128664406 + AluSx SINE Alu 1 300 -12 2029 127 7 17 chrX 33935682 33935981 -128663949 - AluSx SINE Alu -16 296 1 1119 138 78 47 chrX 33936140 33936550 -128663380 - L1MB8 LINE L1 0 6178 5733 519 106 0 24 chrX 33936618 33936703 -128663227 - Alu SINE Alu -2 309 227 668 129 0 0 chrX 33936706 33936799 -128663131 + AluSq SINE Alu 141 233 -80 1500 109 0 41 chrX 33936799 33937019 -128662911 - AluSg SINE Alu -99 211 1 27 49 0 0 chrX 33937174 33937215 -128662715 + AT_rich Low_complexity Low_complexity 1 41 0 2178 108 3 0 chrX 33937374 33937661 -128662269 + AluSq SINE Alu 4 291 -22 25 0 0 0 chrX 33937661 33937686 -128662244 + AT_rich Low_complexity Low_complexity 1 25 0 748 284 70 8 chrX 33937858 33938101 -128661829 + MIR SINE MIR 5 262 0 368 163 353 13 chrX 33938221 33938374 -128661556 + L1MC5 LINE L1 7721 7925 -36 1200 146 0 0 chrX 33938435 33938600 -128661330 - AluSc SINE Alu -144 165 1 2083 214 122 42 chrX 33938720 33939073 -128660857 + L1ME3 LINE L1 5367 5690 -472 1625 174 0 56 chrX 33939073 33939394 -128660536 + AluJb SINE Alu 1 303 -9 2083 214 122 42 chrX 33939394 33939472 -128660458 + L1ME3 LINE L1 5690 5760 -402 2085 104 38 0 chrX 33939472 33939761 -128660169 + AluSg SINE Alu 1 300 -10 2083 214 122 42 chrX 33939761 33939877 -128660053 + L1ME3 LINE L1 5760 5865 -297 2373 93 3 0 chrX 33939877 33940177 -128659753 + AluSx SINE Alu 1 301 -11 2083 214 122 42 chrX 33940177 33940362 -128659568 + L1ME3 LINE L1 5865 6160 -2 2231 146 92 9 chrX 33940439 33940883 -128659047 + Charlie1b DNA MER1_type 37 517 -6 228 240 106 123 chrX 33941434 33941577 -128658353 - MIR3 SINE MIR -13 195 54 1989 140 13 3 chrX 33941577 33941884 -128658046 + AluSx SINE Alu 1 310 -2 228 240 106 123 chrX 33941884 33941919 -128658011 - MIR3 SINE MIR -154 54 20 743 140 281 6 chrX 33942784 33942955 -128656975 + MER20 DNA MER1_type 2 219 0 393 105 0 18 chrX 33943199 33943256 -128656674 + MER46A DNA MER2_type 1 56 -180 2373 73 0 16 chrX 33943257 33943560 -128656370 - AluSx SINE Alu -14 298 1 484 160 101 42 chrX 33943564 33943683 -128656247 + MER46A DNA MER2_type 104 229 -7 2300 103 3 0 chrX 33943843 33944143 -128655787 + AluSq SINE Alu 3 303 -10 1943 82 8 0 chrX 33944674 33944917 -128655013 + AluSp SINE Alu 1 245 -68 682 279 75 9 chrX 33944918 33945144 -128654786 - Tigger8 DNA MER2_type -378 288 48 1390 191 35 17 chrX 33945149 33945437 -128654493 + AluJo SINE Alu 1 293 -19 1258 163 183 44 chrX 33945452 33945790 -128654140 + MER58D DNA MER1_type 2 386 0 329 208 42 73 chrX 33946536 33946632 -128653298 + MIR3 SINE MIR 89 181 -27 273 207 69 0 chrX 33946729 33946787 -128653143 - L2 LINE L2 -8 3264 3203 241 169 0 92 chrX 33947190 33947255 -128652675 - MIR3 SINE MIR -15 193 135 297 228 0 0 chrX 33947281 33947338 -128652592 + L2 LINE L2 3256 3312 -1 1428 162 60 36 chrX 33948110 33948412 -128651518 + AluJb SINE Alu 1 309 -3 678 221 16 79 chrX 33949211 33949401 -128650529 + MER5B DNA MER1_type 1 178 0 1812 77 57 0 chrX 33950072 33950320 -128649610 + AluY SINE Alu 40 301 -10 24 0 0 0 chrX 33951805 33951829 -128648101 + GC_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 33952024 33952055 -128647875 + GC_rich Low_complexity Low_complexity 1 31 0 369 109 0 0 chrX 33952898 33952953 -128646977 + (CGG)n Simple_repeat Simple_repeat 2 56 0 239 273 13 0 chrX 33953026 33953103 -128646827 + C-rich Low_complexity Low_complexity 6 83 0 5831 159 62 12 chrX 33954777 33955555 -128644375 + L1MB4 LINE L1 4083 4821 -1359 180 0 0 0 chrX 33955555 33955575 -128644355 + (TA)n Simple_repeat Simple_repeat 2 21 0 5831 159 62 12 chrX 33955575 33956785 -128643145 + L1MB4 LINE L1 4821 6180 0 570 216 108 0 chrX 33957914 33958053 -128641877 + MER69 DNA AcHobo 1910 2063 -463 2205 126 0 0 chrX 33959350 33959660 -128640270 + AluSg SINE Alu 1 310 0 414 0 0 0 chrX 33960028 33960074 -128639856 + (TG)n Simple_repeat Simple_repeat 2 47 0 2195 92 7 23 chrX 33960079 33960383 -128639547 - AluSx SINE Alu -13 299 1 361 148 78 87 chrX 33961484 33961519 -128638411 + MER69 DNA AcHobo 2054 2088 -438 2401 73 0 13 chrX 33961519 33961822 -128638108 + AluSg SINE Alu 1 299 -11 361 148 78 87 chrX 33961822 33961885 -128638045 + MER69 DNA AcHobo 2088 2153 -373 2141 85 16 41 chrX 33961885 33962204 -128637726 + AluY SINE Alu 1 311 0 361 148 78 87 chrX 33962204 33962219 -128637711 + MER69 DNA AcHobo 2153 2167 -359 888 171 70 0 chrX 33962225 33962412 -128637518 + MER69 DNA AcHobo 2327 2526 0 1146 177 129 16 chrX 33962770 33963018 -128636912 + AluSg SINE Alu 21 296 -14 2270 106 0 25 chrX 33963022 33963343 -128636587 + AluSq SINE Alu 1 313 0 28 0 0 0 chrX 33963545 33963573 -128636357 + AT_rich Low_complexity Low_complexity 1 28 0 2376 98 0 3 chrX 33964519 33964826 -128635104 + AluSq SINE Alu 1 306 -7 2446 143 96 67 chrX 33964826 33965187 -128634743 + L1MCa LINE L1 1887 2236 -4320 2015 152 0 10 chrX 33965187 33965497 -128634433 + AluJb SINE Alu 1 307 -5 2446 143 96 67 chrX 33965497 33965787 -128634143 + L1MCa LINE L1 2236 2605 -3951 1031 171 0 0 chrX 33965787 33965963 -128633967 + AluJb SINE Alu 134 309 -3 1878 81 100 8 chrX 33966001 33966283 -128633647 - AluSx SINE Alu 0 306 1 247 186 0 0 chrX 33966334 33966377 -128633553 - MIR SINE MIR -30 232 190 624 269 58 24 chrX 33966380 33966588 -128633342 - MIR SINE MIR -45 217 3 213 163 0 23 chrX 33966658 33966687 -128633243 + (TTA)n Simple_repeat Simple_repeat 3 32 -12 581 179 95 48 chrX 33966687 33966855 -128633075 - MER104 DNA MER2_type 0 180 5 213 163 0 23 chrX 33966855 33966868 -128633062 + (TTA)n Simple_repeat Simple_repeat 32 44 0 899 248 232 3 chrX 33966895 33967214 -128632716 + L2 LINE L2 2203 2594 -720 1000 211 65 80 chrX 33967215 33967614 -128632316 + MLT1J1 LTR MaLR 2 394 -52 2426 85 0 0 chrX 33967887 33968181 -128631749 + AluSg SINE Alu 1 294 -16 2741 172 17 2 chrX 33968187 33968717 -128631213 + L1PA10 LINE L1 4826 5363 -783 945 166 0 0 chrX 33968731 33968882 -128631048 + L1PA10 LINE L1 5998 6148 -20 210 37 0 0 chrX 33968884 33968911 -128631019 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 611 60 0 0 chrX 33968912 33968996 -128630934 + L1PA15 LINE L1 5357 5440 -725 990 76 0 0 chrX 33969048 33969166 -128630764 + AluSg SINE Alu 1 118 -192 4574 131 22 11 chrX 33969166 33969189 -128630741 + L1PA15 LINE L1 5415 5436 -729 2403 72 0 33 chrX 33969189 33969496 -128630434 + AluSg SINE Alu 1 297 -13 4574 131 22 11 chrX 33969496 33970213 -128629717 + L1PA15 LINE L1 5436 6163 -2 567 271 79 11 chrX 33970308 33970485 -128629445 + REP3 LTR ERV 1 189 -373 410 214 117 28 chrX 33970874 33971019 -128628911 + L2 LINE L2 2808 2965 -349 788 243 6 0 chrX 33971624 33971797 -128628133 - FAM SINE Alu 0 175 2 2280 104 13 3 chrX 33971811 33972120 -128627810 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 33972130 33972154 -128627776 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2198 109 3 7 chrX 33972154 33972437 -128627493 - AluSx SINE Alu -28 284 1 2144 131 0 0 chrX 33972455 33972753 -128627177 - AluSx SINE Alu -14 298 1 2424 82 7 7 chrX 33972810 33973115 -128626815 - AluSp SINE Alu -8 305 1 443 201 8 44 chrX 33973119 33973270 -128626660 - L1ME3 LINE L1 0 6162 6017 1173 233 124 79 chrX 33973270 33974254 -128625676 - L1MC5 LINE L1 -786 7175 6163 2211 99 0 7 chrX 33974273 33974556 -128625374 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 33974556 33974581 -128625349 + (TA)n Simple_repeat Simple_repeat 2 27 0 1724 168 106 117 chrX 33974620 33975149 -128624781 - MLT1F1 LTR MaLR -2 565 18 502 309 60 73 chrX 33975213 33975658 -128624272 - L1MC4a LINE L1 -1761 6047 5609 2309 88 3 3 chrX 33975658 33975953 -128623977 - AluSg SINE Alu -15 295 1 502 309 60 73 chrX 33975953 33976053 -128623877 - L1MC4a LINE L1 -2199 5609 5509 688 80 0 0 chrX 33976098 33976186 -128623744 - AluSg1 SINE Alu -220 89 2 465 231 8 30 chrX 33976239 33976373 -128623557 - L1ME3 LINE L1 0 6162 6032 2097 114 0 0 chrX 33976430 33976710 -128623220 - AluSx SINE Alu -32 280 1 833 328 65 36 chrX 33976710 33977454 -128622476 - L1MC4a LINE L1 -881 6927 6163 2273 79 0 10 chrX 33977469 33977760 -128622170 - AluSx SINE Alu -24 288 1 1604 171 103 109 chrX 33977790 33978325 -128621605 - MLT1F1 LTR MaLR 0 595 18 564 303 65 68 chrX 33978389 33978990 -128620940 - L1MC4a LINE L1 -313 5808 5455 1873 110 0 4 chrX 33979397 33979643 -128620287 - AluSg SINE Alu -65 245 1 1809 139 10 42 chrX 33979644 33979977 -128619953 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 33980193 33980224 -128619706 + AT_rich Low_complexity Low_complexity 1 31 0 2374 71 3 10 chrX 33980224 33980520 -128619410 - AluSp SINE Alu -19 294 1 2060 97 0 72 chrX 33980741 33981062 -128618868 + AluSg1 SINE Alu 1 298 -11 969 121 7 7 chrX 33981069 33981218 -128618712 - FRAM SINE Alu -6 170 22 2157 105 14 0 chrX 33981265 33981551 -128618379 + AluSg SINE Alu 2 291 -19 300 279 100 38 chrX 33981561 33981850 -128618080 + L1MC/D LINE L1 5533 5840 -281 310 221 74 0 chrX 33981962 33982076 -128617854 + MLT1J LTR MaLR 104 288 -327 1258 244 98 15 chrX 33982262 33982598 -128617332 + LTR16A LTR ERVL 87 450 0 2129 113 61 0 chrX 33982738 33983031 -128616899 + AluSx SINE Alu 1 311 -1 626 249 131 22 chrX 33983042 33983497 -128616433 + L1M4 LINE L1 5010 5517 -657 2387 84 0 0 chrX 33983742 33984038 -128615892 - AluSp SINE Alu -17 296 1 33 73 0 0 chrX 33984205 33984273 -128615657 + AT_rich Low_complexity Low_complexity 1 68 0 743 181 0 0 chrX 33984273 33984389 -128615541 - FLAM_C SINE Alu -25 118 3 2224 89 7 0 chrX 33984417 33984729 -128615201 - AluSp SINE Alu 0 314 1 215 227 0 0 chrX 33984842 33984886 -128615044 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 3572 214 66 26 chrX 33984999 33985349 -128614581 - L1ME2 LINE L1 -16 6217 5882 1944 198 116 34 chrX 33985349 33985671 -128614259 + MER34 LTR ERV1 1 380 -162 2242 103 0 29 chrX 33985671 33985981 -128613949 - AluSq SINE Alu -12 301 1 1944 198 116 34 chrX 33985981 33986159 -128613771 + MER34 LTR ERV1 380 542 0 3572 214 66 26 chrX 33986159 33986286 -128613644 - L1ME2 LINE L1 -351 5882 5761 2293 101 0 31 chrX 33986286 33986604 -128613326 - AluSg SINE Alu 0 310 3 3572 214 66 26 chrX 33986604 33987063 -128612867 - L1ME2 LINE L1 -472 5761 5322 198 0 0 0 chrX 33987063 33987085 -128612845 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1967 131 3 3 chrX 33987088 33987370 -128612560 - AluSx SINE Alu -30 282 1 754 199 0 0 chrX 33987374 33987505 -128612425 - FLAM_C SINE Alu -2 131 1 3572 214 66 26 chrX 33987505 33988005 -128611925 - L1ME2 LINE L1 -914 5319 4709 2069 98 0 59 chrX 33988015 33988321 -128611609 + AluSg SINE Alu 1 288 -22 2213 117 0 3 chrX 33988444 33988751 -128611179 - AluSq SINE Alu -7 306 1 2366 34 41 31 chrX 33988780 33989074 -128610856 - AluY SINE Alu -14 297 1 10081 177 84 44 chrX 33989211 33989294 -128610636 + L1MDa LINE L1 16 94 -6446 2136 133 0 0 chrX 33989294 33989588 -128610342 - AluSx SINE Alu -15 297 4 10081 177 84 44 chrX 33989588 33991854 -128608076 + L1MDa LINE L1 94 2459 -4081 2126 109 0 26 chrX 33992632 33992944 -128606986 - AluSx SINE Alu -8 304 1 884 243 183 44 chrX 33993118 33993316 -128606614 - L1ME2 LINE L1 -1559 4656 4487 2640 30 0 3 chrX 33993316 33993611 -128606319 + AluY SINE Alu 1 294 -17 884 243 183 44 chrX 33993611 33994099 -128605831 - L1ME2 LINE L1 -1728 4487 3874 2242 213 25 45 chrX 33994437 33994686 -128605244 - L1ME2 LINE L1 -2824 3391 3138 761 159 0 16 chrX 33994686 33994812 -128605118 - FLAM_C SINE Alu -9 124 1 2242 213 25 45 chrX 33994812 33994860 -128605070 - L1ME2 LINE L1 -3077 3138 3091 966 182 0 29 chrX 33994860 33995030 -128604900 - FRAM SINE Alu -1 165 1 2242 213 25 45 chrX 33995030 33995421 -128604509 - L1ME2 LINE L1 -3124 3091 2716 2118 174 10 12 chrX 33995425 33995839 -128604091 - L1MA4 LINE L1 -3 6297 5885 2087 88 0 4 chrX 33995905 33996178 -128603752 - L1MA4 LINE L1 -426 5878 5607 1984 145 3 0 chrX 33996179 33996476 -128603454 - AluSq SINE Alu -15 298 1 2820 155 27 16 chrX 33996478 33996993 -128602937 - L1MA4 LINE L1 -781 5365 4845 802 119 24 16 chrX 33996993 33997119 -128602811 + FLAM_C SINE Alu 1 127 -16 27 0 0 0 chrX 33997119 33997146 -128602784 + AT_rich Low_complexity Low_complexity 1 27 0 740 136 0 0 chrX 33997153 33997271 -128602659 - L1MA4 LINE L1 -1287 4859 4742 793 225 7 0 chrX 33997273 33997455 -128602475 - FRAM SINE Alu 0 185 3 2877 233 56 74 chrX 33997466 33997894 -128602036 - L1ME2 LINE L1 -4305 2091 1657 2038 117 53 0 chrX 33997894 33998177 -128601753 - AluSg SINE Alu -12 298 1 2877 233 56 74 chrX 33998177 33998379 -128601551 - L1ME2 LINE L1 -4739 1657 1453 2177 118 0 3 chrX 33998379 33998675 -128601255 + AluSq SINE Alu 1 295 -18 2877 233 56 74 chrX 33998675 33998687 -128601243 - L1ME2 LINE L1 -4943 1453 1442 2168 130 0 0 chrX 33998687 33998994 -128600936 + AluSx SINE Alu 1 307 -5 2877 233 56 74 chrX 33998994 33999256 -128600674 - L1ME2 LINE L1 -4954 1442 1177 2292 107 3 3 chrX 33999256 33999564 -128600366 - AluSc SINE Alu -1 308 1 2877 233 56 74 chrX 33999564 33999722 -128600208 - L1ME2 LINE L1 -5219 1177 1018 2066 136 10 0 chrX 33999722 34000024 -128599906 - AluSx SINE Alu -7 305 1 2877 233 56 74 chrX 34000024 34000115 -128599815 - L1ME2 LINE L1 -5378 1018 956 2129 122 0 0 chrX 34000115 34000414 -128599516 - AluSx SINE Alu 0 303 5 2877 233 56 74 chrX 34000414 34000530 -128599400 - L1ME2 LINE L1 -5440 956 839 2250 105 0 0 chrX 34000538 34000844 -128599086 - AluSx SINE Alu 0 306 1 1440 159 4 4 chrX 34000867 34001100 -128598830 - AluJo SINE Alu -11 301 69 855 295 9 24 chrX 34001102 34001434 -128598496 - L1ME2 LINE L1 -5571 825 499 2246 108 0 13 chrX 34001480 34001616 -128598314 + AluSx SINE Alu 1 137 -175 2303 109 3 0 chrX 34001616 34001918 -128598012 + AluSp SINE Alu 1 303 -10 2246 108 0 13 chrX 34001918 34002086 -128597844 + AluSx SINE Alu 137 301 -11 23 33 0 0 chrX 34002707 34002737 -128597193 + AT_rich Low_complexity Low_complexity 1 30 0 3123 54 10 0 chrX 34002858 34003249 -128596681 - L1PA7 LINE L1 -2 6152 5758 2192 126 0 0 chrX 34003252 34003546 -128596384 - AluSg SINE Alu -16 294 1 1759 176 0 16 chrX 34003546 34003858 -128596072 - AluJo SINE Alu -4 308 2 3754 82 53 121 chrX 34004479 34005159 -128594771 + MER51A LTR ERV1 1 634 0 456 228 20 10 chrX 34005216 34005317 -128594613 + MIR SINE MIR 33 134 -128 801 168 58 0 chrX 34005331 34005486 -128594444 + MER5A DNA MER1_type 26 189 0 2185 87 7 30 chrX 34005616 34005916 -128594014 + AluSq SINE Alu 1 293 -20 967 59 8 0 chrX 34005928 34006047 -128593883 + AluSq/x SINE Alu 1 120 -192 1397 171 0 17 chrX 34006215 34006454 -128593476 - AluJb SINE Alu -1 311 77 1970 134 3 36 chrX 34007268 34007573 -128592357 - AluSx SINE Alu -15 297 3 231 215 0 31 chrX 34007685 34007750 -128592180 - L1MC4 LINE L1 -1340 6702 6640 2443 97 0 0 chrX 34007752 34008062 -128591868 - AluSg SINE Alu 0 310 1 908 252 125 9 chrX 34008086 34008407 -128591523 - L1MC4 LINE L1 -1851 5957 5600 1263 121 0 0 chrX 34008409 34008575 -128591355 + AluSx SINE Alu 1 166 -146 1571 123 4 4 chrX 34008575 34008802 -128591128 + AluSg/x SINE Alu 70 296 -14 408 207 42 28 chrX 34008814 34008937 -128590993 - MLT1H LTR MaLR -374 181 69 294 289 44 0 chrX 34008951 34009041 -128590889 - L1MC4 LINE L1 -2192 5616 5523 21 82 0 0 chrX 34009209 34009258 -128590672 + AT_rich Low_complexity Low_complexity 1 49 0 1983 78 0 0 chrX 34009420 34009665 -128590265 - AluY SINE Alu -21 290 46 * 2068 91 4 0 chrX 34009664 34009929 -128590001 - AluSx SINE Alu -46 266 1 2302 91 3 7 chrX 34010315 34010612 -128589318 - AluSp SINE Alu -17 296 1 180 0 0 0 chrX 34011298 34011318 -128588612 + (TGG)n Simple_repeat Simple_repeat 2 21 0 377 256 22 0 chrX 34011338 34011428 -128588502 - MER5A DNA MER1_type -85 104 13 729 212 98 5 chrX 34011636 34011820 -128588110 + L1MC4a LINE L1 5255 5455 -2353 2147 165 42 12 chrX 34011826 34012257 -128587673 + LTR56 LTR ERV1 2 445 0 643 274 189 44 chrX 34012304 34012946 -128586984 + L1MC4a LINE L1 5614 6348 -1460 1974 127 7 16 chrX 34012955 34013263 -128586667 + AluJo SINE Alu 1 305 -7 235 152 0 0 chrX 34013263 34013296 -128586634 - LTR41 LTR ERVL -323 450 418 1009 195 80 73 chrX 34013318 34013467 -128586463 - LTR41 LTR ERVL -472 301 148 2177 132 3 0 chrX 34013467 34013771 -128586159 - AluSx SINE Alu -7 305 1 1009 195 80 73 chrX 34013771 34013908 -128586022 - LTR41 LTR ERVL -625 148 13 1295 197 10 65 chrX 34013916 34014226 -128585704 + L1MC5 LINE L1 6680 6972 -989 479 167 12 0 chrX 34014229 34014313 -128585617 - FLAM_A SINE Alu -33 109 25 194 0 39 0 chrX 34014351 34014377 -128585553 + (CAA)n Simple_repeat Simple_repeat 2 28 0 638 148 7 67 chrX 34014377 34014512 -128585418 + L1MC5 LINE L1 7022 7148 -813 1812 187 78 3 chrX 34014588 34014946 -128584984 + Charlie1a DNA MER1_type 1 385 -1070 675 177 0 32 chrX 34014947 34015071 -128584859 + FLAM_A SINE Alu 1 120 -22 4163 148 48 10 chrX 34015081 34015884 -128584046 + Charlie1a DNA MER1_type 377 1296 -159 878 148 44 0 chrX 34015888 34016023 -128583907 - FRAM SINE Alu -30 146 6 284 86 0 0 chrX 34016040 34016075 -128583855 - U2 snRNA snRNA -153 35 1 2043 99 60 0 chrX 34016085 34016369 -128583561 - AluSc SINE Alu -7 302 2 1909 149 94 18 chrX 34016373 34016843 -128583087 + Charlie1 DNA MER1_type 2161 2731 -30 2443 93 0 0 chrX 34016850 34017152 -128582778 - AluSx SINE Alu -8 304 3 960 182 19 0 chrX 34017174 34017333 -128582597 - AluJo SINE Alu -30 282 121 714 179 20 13 chrX 34017333 34017484 -128582446 + Charlie1 DNA MER1_type 2605 2756 -5 1223 207 22 59 chrX 34017485 34017842 -128582088 + L1MC5 LINE L1 7153 7496 -465 2390 43 0 14 chrX 34017932 34018109 -128581821 - AluSx SINE Alu 0 310 137 2090 118 0 40 chrX 34018109 34018430 -128581500 - AluSg SINE Alu -2 308 1 2390 43 0 14 chrX 34018430 34018558 -128581372 - AluSx SINE Alu -173 137 9 323 279 56 9 chrX 34018750 34018888 -128581042 + MIR SINE MIR 3 144 -64 1745 146 10 48 chrX 34019683 34019972 -128579958 - AluJo SINE Alu 0 411 136 2441 75 3 0 chrX 34019972 34020267 -128579663 - AluSp SINE Alu -17 296 1 1745 146 10 48 chrX 34020267 34020399 -128579531 - AluJo SINE Alu -275 136 1 481 304 41 0 chrX 34020476 34020647 -128579283 + MIR SINE MIR 14 191 -71 550 283 64 47 chrX 34020705 34020831 -128579099 + LTR33 LTR ERVL 2 124 -397 1579 142 0 47 chrX 34020831 34021085 -128578845 + AluJo SINE Alu 40 281 -31 550 283 64 47 chrX 34021085 34021282 -128578648 + LTR33 LTR ERVL 124 370 -151 2320 109 0 0 chrX 34021535 34021838 -128578092 + AluSx SINE Alu 1 303 -9 651 26 0 0 chrX 34022132 34022209 -128577721 + (TA)n Simple_repeat Simple_repeat 1 77 0 2329 79 0 0 chrX 34022212 34022490 -128577440 - AluSc SINE Alu -31 278 1 1266 139 74 19 chrX 34022500 34022715 -128577215 - AluJb SINE Alu -1 311 85 789 111 22 44 chrX 34023128 34023263 -128576667 - FLAM_C SINE Alu 0 143 12 1409 118 142 45 chrX 34024179 34024425 -128575505 - AluJb SINE Alu -19 293 24 1665 160 7 10 chrX 34024437 34024730 -128575200 - AluJo SINE Alu -4 308 17 1275 95 0 0 chrX 34024760 34024918 -128575012 - AluSc SINE Alu -13 296 139 2440 66 3 3 chrX 34024959 34025261 -128574669 + AluSc SINE Alu 1 302 -7 808 166 24 41 chrX 34025316 34025485 -128574445 + MLT1C LTR MaLR 19 184 -321 1107 145 12 0 chrX 34025510 34025682 -128574248 + FRAM SINE Alu 1 173 -3 835 211 188 5 chrX 34025738 34025946 -128573984 + MLT1C LTR MaLR 217 462 -5 232 255 85 57 chrX 34026146 34026252 -128573678 + MLT1K LTR MaLR 156 264 -324 1106 164 5 43 chrX 34026792 34027000 -128572930 - AluJo SINE Alu -26 286 87 1758 156 84 22 chrX 34027532 34027853 -128572077 + MER7A DNA MER2_type 8 346 0 707 184 31 92 chrX 34027853 34028015 -128571915 - MER2 DNA MER2_type -193 152 1 1543 222 80 36 chrX 34028017 34028343 -128571587 - L1MC4 LINE L1 -395 7647 7337 2004 117 46 0 chrX 34028343 34028625 -128571305 + AluSx SINE Alu 1 295 -17 1543 222 80 36 chrX 34028625 34028869 -128571061 - L1MC4 LINE L1 -705 7337 7105 1854 157 3 20 chrX 34028869 34029175 -128570755 + AluJo SINE Alu 1 301 -11 1543 222 80 36 chrX 34029175 34029523 -128570407 - L1MC4 LINE L1 -937 7105 6530 855 188 6 0 chrX 34029525 34029685 -128570245 - AluSg/x SINE Alu -17 292 132 226 279 0 15 chrX 34029685 34029753 -128570177 - L1MC4 LINE L1 -1515 6527 6461 1099 254 83 26 chrX 34030670 34031138 -128568792 - L1MC4 LINE L1 -145 7897 7403 285 160 43 106 chrX 34031943 34031978 -128567952 + MER69 DNA AcHobo 2054 2090 -436 2378 76 0 13 chrX 34031978 34032281 -128567649 + AluSg SINE Alu 1 299 -11 285 160 43 106 chrX 34032281 34032339 -128567591 + MER69 DNA AcHobo 2090 2141 -385 2111 75 16 43 chrX 34032344 34032649 -128567281 + AluY SINE Alu 1 297 -14 4599 129 22 3 chrX 34032649 34033366 -128566564 + L1PA15 LINE L1 5433 6163 -2 567 271 79 11 chrX 34033461 34033638 -128566292 + REP3 LTR ERV 1 189 -373 419 212 110 27 chrX 34034027 34034173 -128565757 + L2 LINE L2 2808 2965 -349 788 243 6 0 chrX 34034778 34034951 -128564979 - FAM SINE Alu 0 175 2 2230 110 13 3 chrX 34034965 34035274 -128564656 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 34035284 34035308 -128564622 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2212 105 3 7 chrX 34035308 34035591 -128564339 - AluSx SINE Alu -28 284 1 2072 134 3 7 chrX 34035601 34035906 -128564024 - AluSx SINE Alu -8 304 1 2392 82 7 10 chrX 34035963 34036266 -128563664 - AluSp SINE Alu -11 302 1 443 201 8 44 chrX 34036270 34036421 -128563509 - L1ME3 LINE L1 0 6162 6017 1173 233 124 79 chrX 34036421 34037405 -128562525 - L1MC5 LINE L1 -786 7175 6163 2211 99 0 7 chrX 34037424 34037707 -128562223 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 34037707 34037732 -128562198 + (TA)n Simple_repeat Simple_repeat 2 27 0 1710 170 106 117 chrX 34037771 34038300 -128561630 - MLT1F1 LTR MaLR -2 565 18 502 309 60 73 chrX 34038364 34038809 -128561121 - L1MC4a LINE L1 -1761 6047 5609 2296 92 3 3 chrX 34038809 34039104 -128560826 - AluSg SINE Alu -15 295 1 502 309 60 73 chrX 34039104 34039204 -128560726 - L1MC4a LINE L1 -2199 5609 5509 688 80 0 0 chrX 34039249 34039337 -128560593 - AluSg SINE Alu -221 89 2 465 231 8 30 chrX 34039390 34039524 -128560406 - L1ME3 LINE L1 0 6162 6032 2097 114 0 0 chrX 34039581 34039861 -128560069 - AluSx SINE Alu -32 280 1 833 327 62 36 chrX 34039861 34040607 -128559323 - L1MC4a LINE L1 -881 6927 6163 2273 79 0 10 chrX 34040622 34040913 -128559017 - AluSx SINE Alu -24 288 1 1616 171 103 109 chrX 34040943 34041478 -128558452 - MLT1F1 LTR MaLR 0 595 18 564 303 65 68 chrX 34041542 34042143 -128557787 - L1MC4a LINE L1 -313 5808 5455 1850 114 0 4 chrX 34042550 34042796 -128557134 - AluSg SINE Alu -65 245 1 1809 139 10 42 chrX 34042797 34043130 -128556800 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 34043346 34043377 -128556553 + AT_rich Low_complexity Low_complexity 1 31 0 2506 64 0 7 chrX 34043377 34043673 -128556257 - AluSq SINE Alu -19 294 1 1218 240 101 21 chrX 34043813 34044150 -128555780 - LTR16A LTR ERVL 0 450 87 310 221 74 0 chrX 34044336 34044450 -128555480 - MLT1J LTR MaLR -327 288 104 300 279 100 38 chrX 34044562 34044851 -128555079 - L1ME3 LINE L1 -281 5840 5533 2157 105 14 0 chrX 34044861 34045147 -128554783 - AluSg SINE Alu -19 291 2 975 120 7 7 chrX 34045194 34045344 -128554586 + FRAM SINE Alu 22 171 -5 422 94 0 0 chrX 34045347 34045411 -128554519 - Alu SINE Alu -9 301 238 408 193 0 36 chrX 34045542 34045625 -128554305 - MLT1H LTR MaLR -375 174 95 294 289 44 0 chrX 34045639 34045729 -128554201 - L1ME3 LINE L1 -2192 5616 5523 21 82 0 0 chrX 34045897 34045946 -128553984 + AT_rich Low_complexity Low_complexity 1 49 0 2343 83 0 0 chrX 34046108 34046398 -128553532 - AluY SINE Alu -21 290 1 1000 211 65 80 chrX 34046671 34047070 -128552860 - MLT1J1 LTR MaLR -52 394 2 899 248 232 3 chrX 34047071 34047390 -128552540 - L2 LINE L2 -720 2594 2203 213 163 0 23 chrX 34047417 34047430 -128552500 + (TAA)n Simple_repeat Simple_repeat 3 15 -29 581 179 95 48 chrX 34047430 34047598 -128552332 + MER104 DNA MER2_type 5 180 0 213 163 0 23 chrX 34047598 34047627 -128552303 + (TAA)n Simple_repeat Simple_repeat 15 44 0 624 269 58 24 chrX 34047697 34047905 -128552025 + MIR SINE MIR 3 217 -45 247 186 0 0 chrX 34047908 34047951 -128551979 + MIR SINE MIR 190 232 -30 2220 88 0 17 chrX 34048002 34048299 -128551631 + AluSx SINE Alu 1 292 -20 385 251 68 12 chrX 34048312 34048475 -128551455 + L1M4 LINE L1 3497 3668 -2478 597 270 28 17 chrX 34048483 34048661 -128551269 - MIR SINE MIR -63 199 20 274 191 0 0 chrX 34048668 34048736 -128551194 - L1MA7 LINE L1 0 6291 6224 2176 103 3 3 chrX 34048922 34049213 -128550717 - AluSg SINE Alu -15 295 5 2227 127 0 0 chrX 34049320 34049620 -128550310 - AluSx SINE Alu -12 300 1 973 185 52 30 chrX 34050265 34050533 -128549397 + LTR1B LTR ERV1 37 347 -479 1859 213 87 0 chrX 34250546 34250936 -128348994 + MER69 DNA AcHobo 647 1070 -1456 249 221 44 0 chrX 34250971 34251039 -128348891 + (TA)n Simple_repeat Simple_repeat 1 71 0 953 214 94 18 chrX 34251045 34251321 -128348609 + MER69 DNA AcHobo 2223 2519 -7 201 74 0 0 chrX 34251608 34251635 -128348295 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 808 303 17 14 chrX 34253127 34253424 -128346506 + LTR16A LTR ERVL 153 450 0 354 222 22 0 chrX 34253854 34253944 -128345986 - MER33 DNA MER1_type 0 363 272 21 57 0 0 chrX 34254252 34254287 -128345643 + GC_rich Low_complexity Low_complexity 1 35 0 2095 120 0 0 chrX 34255124 34255433 -128344497 + AluSx SINE Alu 1 309 -3 295 253 101 39 chrX 34256032 34256210 -128343720 + L3 LINE CR1 1098 1286 -291 222 263 40 30 chrX 34256895 34256994 -128342936 - L2 LINE L2 -1099 2215 2116 300 200 0 0 chrX 34256994 34257054 -128342876 + Charlie7 DNA MER1_type 35 94 -2518 1631 121 85 21 chrX 34257056 34257337 -128342593 - AluJb SINE Alu -13 299 1 1814 133 55 7 chrX 34257343 34257490 -128342440 - AluSx SINE Alu -5 307 168 1614 119 44 8 chrX 34257490 34257742 -128342188 - AluSp SINE Alu -44 269 9 1814 133 55 7 chrX 34257742 34257887 -128342043 - AluSx SINE Alu -144 168 1 942 127 0 0 chrX 34257889 34258023 -128341907 - AluSq/x SINE Alu -179 134 1 589 92 163 0 chrX 34258041 34258139 -128341791 - L1MD3 LINE L1 -340 7655 7542 320 298 75 25 chrX 34258348 34258509 -128341421 - L2 LINE L2 -1231 2083 1915 1167 112 0 0 chrX 34258907 34259086 -128340844 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1944 102 3 11 chrX 34259086 34259369 -128340561 - AluSq SINE Alu -32 281 1 1201 276 68 40 chrX 34259373 34259844 -128340086 - HERV16 LTR ERVL -2660 2336 1853 367 226 191 9 chrX 34259846 34259961 -128339969 + LTR16C LTR ERVL 194 329 -162 2329 113 3 42 chrX 34259978 34260308 -128339622 + L1MA5 LINE L1 5757 6072 -228 2416 99 0 43 chrX 34260308 34260660 -128339270 + MER1B DNA MER1_type 1 337 0 2329 113 3 42 chrX 34260660 34260708 -128339222 + L1MA5 LINE L1 6072 6120 -180 1901 130 20 7 chrX 34260708 34261007 -128338923 - AluJb SINE Alu -9 303 1 398 298 57 14 chrX 34261215 34261356 -128338574 + MIR SINE MIR 8 154 -108 859 236 75 8 chrX 34261514 34261747 -128338183 - L1MD3 LINE L1 -179 7816 7454 1852 125 53 23 chrX 34261747 34262050 -128337880 + AluJb SINE Alu 1 312 0 859 236 75 8 chrX 34262050 34262064 -128337866 - L1MD3 LINE L1 -541 7454 7442 295 265 53 53 chrX 34262070 34262115 -128337815 + L1MC4a LINE L1 5911 5955 -1853 1178 164 103 0 chrX 34262115 34262329 -128337601 - MER46A DNA MER2_type 0 236 1 295 265 53 53 chrX 34262329 34262434 -128337496 + L1MC4a LINE L1 5954 6061 -1747 796 156 8 118 chrX 34262476 34262714 -128337216 + L1MC4 LINE L1 6930 7141 -901 329 268 73 0 chrX 34262714 34262796 -128337134 - L1MC4 LINE L1 -1340 6702 6615 243 228 22 43 chrX 34262799 34262891 -128337039 + L1MC4 LINE L1 6614 6703 -1339 233 172 35 0 chrX 34262894 34262952 -128336978 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 306 261 0 11 chrX 34262964 34263052 -128336878 + L1MC4 LINE L1 7185 7271 -771 1822 125 0 104 chrX 34263052 34263251 -128336679 - AluJo SINE Alu 0 302 151 1806 157 3 10 chrX 34263251 34263564 -128336366 - AluJb SINE Alu -1 311 1 1822 125 0 104 chrX 34263564 34263701 -128336229 - AluJo SINE Alu -151 151 1 2464 213 58 85 chrX 34264326 34264626 -128335304 + L1MC4 LINE L1 7161 7467 -575 2052 167 11 19 chrX 34264626 34264992 -128334938 - MLT1A1 LTR MaLR 0 365 3 2464 213 58 85 chrX 34264992 34265076 -128334854 + L1MC4 LINE L1 7467 7552 -490 2023 77 43 47 chrX 34265076 34265375 -128334555 + AluSx SINE Alu 1 298 -14 2464 213 58 85 chrX 34265375 34265657 -128334273 + L1MC4 LINE L1 7552 7840 -202 2228 86 3 16 chrX 34265657 34265971 -128333959 + AluSx SINE Alu 1 310 -2 2464 213 58 85 chrX 34265971 34266036 -128333894 + L1MC4 LINE L1 7840 7905 -137 1701 165 27 0 chrX 34266036 34266333 -128333597 + AluJb SINE Alu 1 305 -7 2464 213 58 85 chrX 34266333 34266504 -128333426 + L1MC4 LINE L1 7905 8042 0 789 169 50 30 chrX 34267367 34267517 -128332413 + L1MB2 LINE L1 5967 6123 -48 2106 77 57 17 chrX 34267517 34267815 -128332115 + AluSg SINE Alu 1 310 0 789 169 50 30 chrX 34267815 34267865 -128332065 + L1MB2 LINE L1 6123 6171 0 22 0 0 0 chrX 34267865 34267887 -128332043 + AT_rich Low_complexity Low_complexity 1 22 0 506 133 0 0 chrX 34267934 34268009 -128331921 - Alu SINE Alu -9 302 228 895 181 0 12 chrX 34268011 34268177 -128331753 - AluJo SINE Alu -148 164 1 348 24 0 0 chrX 34268688 34268729 -128331201 + (TG)n Simple_repeat Simple_repeat 1 41 0 613 275 154 51 chrX 34269352 34269708 -128330222 - MLT1K LTR MaLR -116 472 80 1291 293 74 24 chrX 34269730 34270228 -128329702 + MLT1G1 LTR MaLR 73 595 0 728 149 8 30 chrX 34270239 34270373 -128329557 + MSTC LTR MaLR 1 131 -297 5234 333 43 34 chrX 34270382 34270396 -128329534 + ERVL LTR ERVL 2355 2367 -3397 2246 99 0 0 chrX 34270396 34270698 -128329232 + AluSg1 SINE Alu 1 302 -7 5234 333 43 34 chrX 34270698 34271387 -128328543 + ERVL LTR ERVL 2367 3048 -2716 1859 155 16 0 chrX 34271387 34271691 -128328239 - AluJo SINE Alu -3 309 1 5234 333 43 34 chrX 34271691 34272421 -128327509 + ERVL LTR ERVL 3048 3769 -1995 2747 71 16 27 chrX 34272421 34272789 -128327141 + THE1B LTR MaLR 1 364 0 5234 333 43 34 chrX 34272789 34274002 -128325928 + ERVL LTR ERVL 3769 5029 -735 943 267 87 76 chrX 34274451 34274900 -128325030 + LTR16A LTR ERVL 1 454 -3 8214 160 58 24 chrX 34275118 34276647 -128323283 - MER45R DNA AcHobo 0 1581 1 1131 258 21 14 chrX 34276703 34276990 -128322940 - LTR16C LTR ERVL 0 491 203 393 70 0 0 chrX 34278327 34278384 -128321546 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1234 173 4 17 chrX 34278387 34278624 -128321306 - AluJo SINE Alu -30 282 49 1628 141 4 18 chrX 34278688 34278965 -128320965 - AluJb SINE Alu -39 273 1 408 321 157 24 chrX 34279030 34279481 -128320449 - L1ME4a LINE L1 -75 6046 5536 183 236 135 81 chrX 34279828 34279976 -128319954 + L2 LINE L2 2925 3080 -192 1812 182 63 37 chrX 34280036 34280465 -128319465 - LTR47B LTR ERVL -3 440 1 2154 111 0 7 chrX 34280482 34280788 -128319142 - AluSx SINE Alu -8 304 1 2044 122 7 0 chrX 34281395 34281690 -128318240 + AluJb SINE Alu 1 297 -15 196 319 14 0 chrX 34281694 34281766 -128318164 + MIR SINE MIR 136 208 -54 385 224 33 125 chrX 34282782 34282934 -128316996 - MLT1H LTR MaLR -169 380 243 914 129 7 7 chrX 34282934 34283081 -128316849 + AluJb SINE Alu 136 282 -30 380 249 115 46 chrX 34283113 34283330 -128316600 - MLT1H LTR MaLR -296 253 22 1651 143 17 17 chrX 34283374 34283668 -128316262 + AluJb SINE Alu 3 296 -16 741 129 88 82 chrX 34283824 34283892 -128316038 - L1MA9 LINE L1 -5 6307 6241 2120 65 76 7 chrX 34283892 34284183 -128315747 - AluY SINE Alu 0 311 1 741 129 88 82 chrX 34284183 34284285 -128315645 - L1MA9 LINE L1 -71 6241 6136 2298 92 0 0 chrX 34284298 34284593 -128315337 + AluSx SINE Alu 1 295 -17 813 156 0 8 chrX 34284595 34284717 -128315213 - AluJo/FLAM SINE Alu -190 122 2 2226 107 0 3 chrX 34285501 34285809 -128314121 + AluSp SINE Alu 1 307 -6 2053 100 29 0 chrX 34286108 34286387 -128313543 + AluSx SINE Alu 3 289 -23 1687 134 38 22 chrX 34286446 34286507 -128313423 - MER33 DNA MER1_type -2262 323 264 1898 128 17 3 chrX 34286507 34286795 -128313135 - AluJb SINE Alu -19 293 2 1687 134 38 22 chrX 34286795 34287047 -128312883 - MER33 DNA MER1_type -2321 264 5 295 318 11 0 chrX 34287260 34287348 -128312582 + L1MC/D LINE L1 5494 5582 -2226 876 139 23 0 chrX 34287388 34287517 -128312413 + FLAM_C SINE Alu 2 133 0 666 299 126 29 chrX 34288973 34289354 -128310576 - LTR16A LTR ERVL 0 450 33 233 307 68 11 chrX 34289372 34289460 -128310470 - MIR SINE MIR -168 94 2 249 156 44 0 chrX 34289796 34289841 -128310089 + L1P4 LINE L1 5861 5907 -259 1746 127 79 7 chrX 34289842 34290134 -128309796 + AluSq SINE Alu 1 313 0 1972 118 3 7 chrX 34290141 34290438 -128309492 + L1PA15 LINE L1 5870 6165 0 2058 103 0 25 chrX 34290605 34290940 -128308990 - AluSx SINE Alu 0 327 1 1622 142 3 112 chrX 34291028 34291048 -128308882 - AluJb SINE Alu 0 302 281 357 24 0 0 chrX 34291048 34291090 -128308840 + (TG)n Simple_repeat Simple_repeat 1 42 0 1622 142 3 112 chrX 34291090 34291407 -128308523 - AluJb SINE Alu -21 281 2 926 256 23 5 chrX 34291423 34291642 -128308288 - MIR SINE MIR -14 248 26 649 286 21 5 chrX 34292096 34292285 -128307645 + MIR3 SINE MIR 10 201 -7 1843 156 0 20 chrX 34292812 34293113 -128306817 - AluJb SINE Alu -16 296 2 204 323 16 0 chrX 34293827 34293889 -128306041 + MIR SINE MIR 88 150 -112 802 235 59 40 chrX 34294790 34295062 -128304868 - LTR33 LTR ERVL -7 514 238 2512 10 10 0 chrX 34295314 34295602 -128304328 - AluYa5 SINE Alu -3 308 18 812 123 0 0 chrX 34295650 34295772 -128304158 - AluSg/x SINE Alu -1 308 187 1406 88 0 0 chrX 34295981 34296173 -128303757 + AluSg/x SINE Alu 121 312 0 266 271 115 0 chrX 34296174 34296270 -128303660 + L1MC4a LINE L1 7166 7272 -536 22 0 0 0 chrX 34296272 34296294 -128303636 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chrX 34296749 34296801 -128303129 + AT_rich Low_complexity Low_complexity 1 52 0 906 151 7 0 chrX 34297371 34297564 -128302366 + AluSg/x SINE Alu 135 328 0 2085 109 3 7 chrX 34297763 34298065 -128301865 - AluSx SINE Alu -11 301 1 21 0 0 0 chrX 34298131 34298152 -128301778 + AT_rich Low_complexity Low_complexity 1 21 0 968 284 119 12 chrX 34298779 34299265 -128300665 + L1MC4 LINE L1 7346 7883 -159 1586 204 227 14 chrX 34301952 34302392 -128297538 - MLT1F LTR MaLR -8 534 1 26 50 0 0 chrX 34303622 34303662 -128296268 + AT_rich Low_complexity Low_complexity 1 40 0 2105 103 0 0 chrX 34303890 34304182 -128295748 - AluSx SINE Alu -20 292 1 322 264 70 23 chrX 34304184 34304313 -128295617 - L1MC4a LINE L1 -1904 5904 5770 199 292 0 0 chrX 34304553 34304601 -128295329 + L2 LINE L2 3262 3309 -4 1732 142 46 4 chrX 34305711 34305992 -128293938 - AluJo SINE Alu -17 295 3 2142 86 0 20 chrX 34306295 34306597 -128293333 - AluSx SINE Alu -3 309 14 2035 109 3 13 chrX 34306829 34307132 -128292798 - AluJb SINE Alu -12 300 1 1263 216 122 10 chrX 34307135 34307431 -128292499 - MLT1D LTR MaLR -176 329 1 808 267 20 40 chrX 34307509 34307547 -128292383 - LTR16C LTR ERVL -3 488 451 1600 141 48 4 chrX 34307547 34307846 -128292084 + AluJo SINE Alu 1 311 0 808 267 20 40 chrX 34307846 34308053 -128291877 - LTR16C LTR ERVL -40 451 247 * 1063 238 36 8 chrX 34308050 34308298 -128291632 - MLT1C LTR MaLR -14 453 199 2111 102 3 3 chrX 34308324 34308628 -128291302 - AluSq SINE Alu -9 304 1 26 0 0 0 chrX 34308630 34308656 -128291274 + AT_rich Low_complexity Low_complexity 1 26 0 2443 94 126 5 chrX 34308819 34309200 -128290730 + MSTA LTR MaLR 1 427 -1 2052 108 0 34 chrX 34309259 34309582 -128290348 - AluSx SINE Alu 0 312 1 571 247 110 22 chrX 34309706 34309888 -128290042 - MLT1C LTR MaLR -307 198 1 346 269 87 40 chrX 34310943 34311092 -128288838 + MLT1H LTR MaLR 138 293 -256 239 228 105 0 chrX 34311147 34311204 -128288726 - LTR16C LTR ERVL -107 384 322 1899 152 9 40 chrX 34311370 34311718 -128288212 - MER1B DNA MER1_type 0 337 1 1066 152 0 0 chrX 34311730 34311894 -128288036 - AluJb SINE Alu -14 298 135 1946 139 3 3 chrX 34312276 34312577 -128287353 + AluSq SINE Alu 1 301 -12 2178 131 33 38 chrX 34313094 34313460 -128286470 - THE1B LTR MaLR 0 364 1 447 310 0 22 chrX 34313731 34313915 -128286015 + (TG)n Simple_repeat Simple_repeat 1 180 0 1148 265 84 11 chrX 34314294 34314675 -128285255 + LTR16C LTR ERVL 81 489 -2 289 200 57 14 chrX 34315021 34315091 -128284839 + L2 LINE L2 3193 3265 -7 1603 92 176 8 chrX 34315775 34316034 -128283896 - AluSg SINE Alu 0 303 5 629 194 97 29 chrX 34316441 34316616 -128283314 + LTR16C LTR ERVL 298 484 -7 2097 117 0 0 chrX 34316760 34317058 -128282872 - AluSx SINE Alu -14 298 1 237 183 174 18 chrX 34317915 34318002 -128281928 - MIR SINE MIR -44 218 116 1832 259 88 4 chrX 34318426 34318928 -128281002 - MLT1H1 LTR MaLR 0 555 12 243 0 0 0 chrX 34319729 34319756 -128280174 + (CA)n Simple_repeat Simple_repeat 1 27 0 1793 146 0 53 chrX 34320013 34320212 -128279718 - AluJb SINE Alu -8 304 127 2077 122 3 0 chrX 34320212 34320516 -128279414 + AluSx SINE Alu 1 305 -7 1793 146 0 53 chrX 34320516 34320637 -128279293 - AluJb SINE Alu -185 127 1 1664 213 141 62 chrX 34320640 34320772 -128279158 + MLT1G1 LTR MaLR 53 173 -422 2070 209 77 62 chrX 34320772 34321384 -128278546 - MLT1E3 LTR MaLR 0 624 4 1664 213 141 62 chrX 34321384 34321753 -128278177 + MLT1G1 LTR MaLR 173 594 -1 2093 132 0 0 chrX 34322180 34322490 -128277440 - AluSx SINE Alu -2 310 1 533 188 31 31 chrX 34322602 34322730 -128277200 + AluSq/x SINE Alu 2 129 -184 355 177 0 16 chrX 34323103 34323188 -128276742 + Alu SINE Alu 225 308 0 2091 98 0 0 chrX 34323204 34323480 -128276450 + AluSx SINE Alu 5 280 -32 1716 142 35 7 chrX 34323501 34323790 -128276140 + AluJo SINE Alu 1 297 -15 645 118 59 88 chrX 34324955 34325091 -128274839 + FLAM_A SINE Alu 1 132 -1 385 270 145 29 chrX 34326579 34326754 -128273176 + L1ME3 LINE L1 5508 5708 -456 2264 91 13 0 chrX 34326756 34327094 -128272836 + AluSq SINE Alu 1 342 0 632 258 6 0 chrX 34327094 34327253 -128272677 + LTR16C LTR ERVL 332 491 0 786 272 54 66 chrX 34327266 34327689 -128272241 - L3b LINE CR1 -27 1556 1139 1102 240 92 43 chrX 34328488 34328834 -128271096 + L1ME3 LINE L1 5734 6096 -66 2036 109 37 3 chrX 34328842 34329136 -128270794 + AluSx SINE Alu 1 304 -8 5826 76 11 22 chrX 34329142 34329425 -128270505 + L1PB2 LINE L1 5321 5606 -545 2179 104 0 0 chrX 34329425 34329722 -128270208 - AluY SINE Alu -14 297 1 5826 76 11 22 chrX 34329722 34330280 -128269650 + L1PB2 LINE L1 5606 6148 -3 24 115 0 0 chrX 34330281 34330403 -128269527 + AT_rich Low_complexity Low_complexity 1 122 0 2104 112 7 0 chrX 34330403 34330697 -128269233 + AluSx SINE Alu 1 296 -16 1021 241 51 19 chrX 34330697 34330954 -128268976 - MLT1E3 LTR MaLR -210 414 150 664 99 18 9 chrX 34330955 34331066 -128268864 + (TTCC)n Simple_repeat Simple_repeat 2 113 0 1414 172 104 0 chrX 34331070 34331349 -128268581 - AluJb SINE Alu -4 308 1 2096 116 3 0 chrX 34331376 34331670 -128268260 + AluSx SINE Alu 1 295 -17 833 174 0 0 chrX 34331690 34331822 -128268108 - MLT1E3 LTR MaLR -522 132 1 370 167 17 0 chrX 34332120 34332180 -128267750 - U7 snRNA snRNA -1 62 2 1523 143 21 21 chrX 34332216 34332503 -128267427 + L1MB2 LINE L1 5883 6169 -2 1566 190 7 10 chrX 34332511 34332801 -128267129 + AluJb SINE Alu 1 289 -23 2399 145 3 3 chrX 34333447 34333812 -128266118 + MLT1A1 LTR MaLR 1 365 0 260 138 46 62 chrX 34333823 34333888 -128266042 + LTR50 LTR ERVL 727 790 -5 260 256 47 23 chrX 34334124 34334210 -128265720 + MLT1L LTR MaLR 1 88 -527 727 278 88 48 chrX 34334243 34334643 -128265287 + MLT1L LTR MaLR 200 615 0 194 287 213 7 chrX 34334743 34334893 -128265037 + L2 LINE L2 1488 1668 -1646 272 265 15 91 chrX 34335274 34335406 -128264524 + L2 LINE L2 1644 1765 -1549 307 202 34 22 chrX 34335909 34335998 -128263932 + L1ME3A LINE L1 5877 5966 -204 1899 111 94 26 chrX 34336134 34336485 -128263445 + THE1C LTR MaLR 1 375 0 25 65 0 0 chrX 34336488 34336534 -128263396 + AT_rich Low_complexity Low_complexity 1 46 0 265 269 51 39 chrX 34336732 34336810 -128263120 - L2 LINE L2 -545 2769 2691 1076 141 17 0 chrX 34336813 34336990 -128262940 + AluJo SINE Alu 122 301 -11 424 168 99 20 chrX 34337397 34337498 -128262432 - L1MB8 LINE L1 -46 6132 6024 2151 134 0 6 chrX 34337498 34337812 -128262118 + AluSx SINE Alu 1 312 0 437 258 106 8 chrX 34337860 34337992 -128261938 - L1MEd LINE L1 -5673 446 302 472 193 171 101 chrX 34338010 34338065 -128261865 - L1MEd LINE L1 -5874 245 195 2288 84 0 3 chrX 34338065 34338363 -128261567 - AluSg SINE Alu -13 297 1 472 193 171 101 chrX 34338363 34338421 -128261509 - L1MEd LINE L1 -5924 195 143 2248 100 0 0 chrX 34338421 34338732 -128261198 - AluSx SINE Alu -1 311 1 472 193 171 101 chrX 34338732 34338845 -128261085 - L1MEd LINE L1 -5976 143 2 207 289 0 0 chrX 34339141 34339193 -128260737 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 659 211 0 30 chrX 34339417 34339550 -128260380 - FLAM_A SINE Alu -13 129 1 636 128 27 54 chrX 34340016 34340165 -128259765 - L1MA8 LINE L1 0 6291 6147 1017 95 12 35 chrX 34340584 34340753 -128259177 + L1MB3 LINE L1 6011 6175 -8 795 147 22 29 chrX 34342900 34343036 -128256894 + AluJo SINE Alu 2 136 -176 26 93 0 0 chrX 34343290 34343365 -128256565 + AT_rich Low_complexity Low_complexity 1 75 0 608 240 133 5 chrX 34344098 34344294 -128255636 - L1ME3 LINE L1 0 6162 5942 2158 101 0 3 chrX 34344545 34344841 -128255089 - AluSx SINE Alu -17 295 1 523 239 80 52 chrX 34345717 34346006 -128253924 - L1MEd LINE L1 -3000 3129 2833 490 213 60 105 chrX 34346004 34346319 -128253611 - HAL1 LINE L1 -133 2374 2074 * 225 267 126 15 chrX 34346334 34346469 -128253461 - HAL1 LINE L1 -1027 1480 1331 1427 131 0 0 chrX 34346514 34346751 -128253179 - L1MA7 LINE L1 0 6291 6055 2159 122 55 50 chrX 34346751 34346921 -128253009 + L1MA7 LINE L1 5618 5786 -505 2081 116 0 28 chrX 34346921 34347241 -128252689 + AluSx SINE Alu 1 311 -1 2159 122 55 50 chrX 34347241 34347472 -128252458 + L1MA7 LINE L1 5786 6021 -270 1968 129 3 0 chrX 34347477 34347771 -128252159 - AluSx SINE Alu -17 295 1 305 317 18 18 chrX 34347781 34347948 -128251982 - L1MEd LINE L1 -3303 2826 2660 268 234 108 19 chrX 34348010 34348168 -128251762 + L1M4 LINE L1 2795 2966 -3180 875 118 15 37 chrX 34348228 34348364 -128251566 - FLAM_C SINE Alu 0 133 1 309 305 15 46 chrX 34348754 34348951 -128250979 - L1MEd LINE L1 -5917 202 12 21 0 0 0 chrX 34349345 34349366 -128250564 + AT_rich Low_complexity Low_complexity 1 21 0 1590 184 4 0 chrX 34350059 34350337 -128249593 + AluJb SINE Alu 1 279 -33 216 0 0 0 chrX 34350342 34350366 -128249564 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1493 148 16 59 chrX 34350381 34350684 -128249246 + AluJo SINE Alu 1 290 -22 825 137 30 8 chrX 34351353 34351484 -128248446 - AluJo SINE Alu -176 136 3 267 178 22 0 chrX 34351967 34352012 -128247918 + MER57A LTR ERV1 291 336 -67 792 171 28 74 chrX 34352855 34353031 -128246899 - AluJo SINE Alu -22 290 123 2097 117 0 0 chrX 34353450 34353749 -128246181 - AluSx SINE Alu -13 299 1 430 265 61 117 chrX 34353917 34354181 -128245749 - L3 LINE CR1 -7 1570 1322 568 202 34 8 chrX 34354493 34354612 -128245318 + L2 LINE L2 3192 3313 0 380 272 55 55 chrX 34354631 34354848 -128245082 + L2 LINE L2 1626 1842 -1472 782 232 11 11 chrX 34354861 34355038 -128244892 - AluSg/x SINE Alu -9 301 125 826 174 45 6 chrX 34355627 34355805 -128244125 - MER53 DNA DNA -4 185 1 747 179 0 0 chrX 34356500 34356617 -128243313 + FLAM_C SINE Alu 1 117 -16 2269 87 0 0 chrX 34356938 34357236 -128242694 - AluSq SINE Alu -14 299 2 21 57 0 0 chrX 34357238 34357273 -128242657 + AT_rich Low_complexity Low_complexity 1 35 0 213 400 27 9 chrX 34357756 34357866 -128242064 - MIR SINE MIR -60 148 37 1684 171 27 34 chrX 34358287 34358660 -128241270 + L1MC3 LINE L1 7179 7687 -308 2026 131 0 3 chrX 34358660 34358957 -128240973 + AluSx SINE Alu 1 296 -16 1086 159 0 0 chrX 34358957 34359133 -128240797 + AluJb SINE Alu 134 309 -3 230 236 57 89 chrX 34359208 34359331 -128240599 + L1ME2 LINE L1 5963 6081 -83 2312 95 0 0 chrX 34360104 34360408 -128239522 - AluSx SINE Alu -8 304 1 1848 82 0 0 chrX 34360794 34361071 -128238859 - AluSx SINE Alu 0 331 55 3613 119 18 18 chrX 34361087 34361587 -128238343 - L1MB3 LINE L1 -2 6181 5679 2040 125 0 32 chrX 34361587 34361900 -128238030 + AluSx SINE Alu 1 303 -9 3613 119 18 18 chrX 34361900 34361968 -128237962 - L1MB3 LINE L1 -503 5680 5613 2364 158 21 3 chrX 34361979 34362359 -128237571 - MSTD LTR MaLR -9 387 1 847 152 0 14 chrX 34362359 34362504 -128237426 - L1MB3 LINE L1 -565 5618 5476 236 122 0 0 chrX 34362523 34362572 -128237358 - L1MB3 LINE L1 -676 5495 5447 228 182 0 0 chrX 34362675 34362719 -128237211 + T-rich Low_complexity Low_complexity 2 45 0 1520 117 120 15 chrX 34362797 34363063 -128236867 - AluSg SINE Alu -16 294 1 1922 69 138 0 chrX 34363066 34363327 -128236603 - AluSq SINE Alu -6 297 1 805 120 0 38 chrX 34363332 34363465 -128236465 - FLAM_C SINE Alu -5 128 1 805 206 11 22 chrX 34363642 34363822 -128236108 + L1ME3 LINE L1 5950 6127 -35 306 132 0 0 chrX 34364201 34364254 -128235676 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 4248 111 34 2 chrX 34364332 34364947 -128234983 + MER41B LTR ERV1 1 635 0 824 167 71 6 chrX 34365956 34366124 -128233806 - L1MC3 LINE L1 -8 7777 7599 1224 149 0 0 chrX 34366124 34366319 -128233611 - AluSg/x SINE Alu -11 301 107 1278 199 26 132 chrX 34366319 34366878 -128233052 - MLT1G1 LTR MaLR -78 477 1 23 33 0 0 chrX 34366987 34367017 -128232913 + AT_rich Low_complexity Low_complexity 1 30 0 2141 117 0 13 chrX 34367084 34367400 -128232530 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 34367495 34367518 -128232412 + AT_rich Low_complexity Low_complexity 1 23 0 785 170 0 30 chrX 34367576 34367711 -128232219 + FLAM_C SINE Alu 3 133 0 272 298 0 0 chrX 34368427 34368511 -128231419 - L1MC/D LINE L1 -2026 5782 5699 210 37 0 0 chrX 34368573 34368600 -128231330 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1958 115 4 0 chrX 34368603 34368881 -128231049 - AluSx SINE Alu -33 279 1 2259 100 0 3 chrX 34369783 34370094 -128229836 - AluSq SINE Alu -3 310 1 603 255 152 41 chrX 34370288 34370310 -128229620 + L1MC4a LINE L1 5687 5705 -2103 1934 141 70 6 chrX 34370310 34370637 -128229293 + MER7A DNA MER2_type 1 346 0 603 255 152 41 chrX 34370637 34371049 -128228881 + L1MC4a LINE L1 5705 6169 -1639 2038 124 0 0 chrX 34371056 34371346 -128228584 + AluSx SINE Alu 1 290 -22 1817 119 7 20 chrX 34371748 34372042 -128227888 - AluSq SINE Alu -23 290 1 1942 134 7 0 chrX 34372322 34372613 -128227317 + AluJo SINE Alu 3 295 -17 1850 129 24 14 chrX 34372616 34372911 -128227019 + AluSx SINE Alu 1 298 -14 738 233 70 73 chrX 34372920 34373207 -128226723 + MLT1G LTR MaLR 110 395 -195 463 315 99 20 chrX 34373218 34373466 -128226464 + L1M4 LINE L1 2644 2920 -3226 697 144 63 0 chrX 34373466 34373577 -128226353 + AluJ SINE Alu 1 118 -184 463 315 99 20 chrX 34373577 34373620 -128226310 + L1M4 LINE L1 2920 2958 -3188 2125 108 16 0 chrX 34373668 34373973 -128225957 + AluSx SINE Alu 1 310 -2 1079 153 58 2 chrX 34374012 34374254 -128225676 + AluJb SINE Alu 1 308 -4 979 174 0 11 chrX 34374535 34374550 -128225380 - AluJb SINE Alu 0 312 298 2316 93 0 3 chrX 34374550 34374860 -128225070 - AluSq SINE Alu -4 309 1 979 174 0 11 chrX 34374860 34375022 -128224908 - AluJb SINE Alu -14 298 137 2312 89 0 0 chrX 34375442 34375746 -128224184 + AluSx SINE Alu 1 304 -8 1674 107 34 4 chrX 34375800 34376062 -128223868 + AluSx SINE Alu 3 272 -40 604 164 0 0 chrX 34376123 34376227 -128223703 - AluSp SINE Alu -7 306 203 1089 99 13 0 chrX 34376232 34376384 -128223546 - AluSp SINE Alu -158 155 2 2197 107 0 22 chrX 34376533 34376852 -128223078 - AluSx SINE Alu 0 312 1 254 330 10 31 chrX 34376938 34377035 -128222895 - MIR SINE MIR -58 204 110 241 182 36 36 chrX 34377277 34377332 -128222598 - MLT1K LTR MaLR -411 177 123 559 214 38 30 chrX 34377397 34377528 -128222402 - FLAM_C SINE Alu -1 132 1 715 216 16 42 chrX 34377639 34377680 -128222250 + MLT1C LTR MaLR 1 42 -425 568 69 0 92 chrX 34377680 34377767 -128222163 + MADE1 DNA Mariner 1 79 -1 715 216 16 42 chrX 34377767 34377974 -128221956 + MLT1C LTR MaLR 42 328 -139 481 209 16 107 chrX 34477976 34478049 -128121881 - L1ME1 LINE L1 -167 5999 6038 1176 181 14 14 chrX 34478049 34478264 -128121666 + MER58C DNA MER1_type 1 215 0 481 209 16 107 chrX 34478264 34478402 -128121528 - L1ME1 LINE L1 -127 6039 5890 1108 178 108 11 chrX 34478402 34478671 -128121259 - AluSx SINE Alu -6 296 2 2095 97 3 62 chrX 34478675 34478843 -128121087 - AluSx SINE Alu -11 301 159 2121 81 3 50 chrX 34478843 34479140 -128120790 - AluSg SINE Alu -13 297 15 2095 97 3 62 chrX 34479140 34479291 -128120639 - AluSx SINE Alu -153 159 1 1647 186 26 26 chrX 34479291 34479636 -128120294 - L1MD2 LINE L1 -399 5960 5616 1639 84 33 0 chrX 34480968 34481183 -128118747 + AluSg/x SINE Alu 85 306 -6 2212 114 3 0 chrX 34482418 34482717 -128117213 + AluSx SINE Alu 1 300 -12 494 248 136 10 chrX 34482725 34482931 -128116999 + LTR16C LTR ERVL 1 232 -259 248 0 31 0 chrX 34482931 34482963 -128116967 + (TG)n Simple_repeat Simple_repeat 1 33 0 2304 95 3 0 chrX 34483094 34483404 -128116526 - AluSx SINE Alu 0 311 1 2494 138 15 15 chrX 34483413 34483796 -128116134 + MER57A LTR ERV1 1 386 -17 2113 143 3 3 chrX 34483796 34484103 -128115827 - AluSx SINE Alu -5 307 1 2494 138 15 15 chrX 34484103 34484118 -128115812 + MER57A LTR ERV1 385 399 -4 2888 258 44 60 chrX 34484192 34485134 -128114796 + L1MEc LINE L1 39 995 -5401 2083 144 0 0 chrX 34485134 34485444 -128114486 - AluSx SINE Alu 0 312 1 2888 258 44 60 chrX 34485444 34485463 -128114467 + L1MEc LINE L1 995 1013 -5383 1893 122 0 3 chrX 34485463 34485749 -128114181 + L1MB3 LINE L1 5892 6176 -7 2888 258 44 60 chrX 34485749 34486255 -128113675 + L1MEc LINE L1 1013 1296 -5100 1800 146 71 0 chrX 34486255 34486522 -128113408 + AluSx SINE Alu 1 286 -26 2888 258 44 60 chrX 34486522 34487022 -128112908 + L1MEc LINE L1 1296 1803 -4593 916 73 0 0 chrX 34487036 34487146 -128112784 + AluSq/x SINE Alu 1 110 -203 2485 69 10 0 chrX 34487415 34487718 -128112212 - AluY SINE Alu -5 306 1 1038 101 0 7 chrX 34488392 34488531 -128111399 + AluSq/x SINE Alu 1 138 -175 1031 165 0 0 chrX 34488725 34488889 -128111041 + FAM SINE Alu 2 165 -10 635 167 28 94 chrX 34489943 34490123 -128109807 - L2 LINE L2 -5 3308 3141 2461 166 42 2 chrX 34490140 34490550 -128109380 - MSTB LTR MaLR 0 426 1 363 212 10 40 chrX 34490609 34490708 -128109222 + L2 LINE L2 1609 1704 -1610 2981 62 5 3 chrX 34490712 34491084 -128108846 + THE1C LTR MaLR 3 375 0 758 238 151 44 chrX 34491099 34491689 -128108241 + L2 LINE L2 2662 3309 -4 1880 84 11 0 chrX 34491774 34492061 -128107869 - L1PA10 LINE L1 0 6168 5905 1959 128 44 3 chrX 34492061 34492358 -128107572 - AluSx SINE Alu -3 309 1 1377 179 45 62 chrX 34493141 34493432 -128106498 + AluJo SINE Alu 1 286 -26 23 0 0 0 chrX 34493945 34493968 -128105962 + AT_rich Low_complexity Low_complexity 1 23 0 2282 106 3 0 chrX 34493972 34494273 -128105657 + AluSx SINE Alu 1 302 -10 234 0 0 0 chrX 34494696 34494722 -128105208 + (TTG)n Simple_repeat Simple_repeat 2 27 0 675 130 154 16 chrX 34495549 34495672 -128104258 + THE1C LTR MaLR 3 142 -233 260 241 0 24 chrX 34495827 34495910 -128104020 - MLT1B LTR MaLR -120 270 190 300 133 0 0 chrX 34495915 34495975 -128103955 + (GA)n Simple_repeat Simple_repeat 2 61 0 861 129 66 40 chrX 34495975 34496163 -128103767 - MLT1B LTR MaLR -196 178 1 2043 105 56 7 chrX 34496650 34496935 -128102995 + AluSg SINE Alu 1 299 -11 3479 123 2 38 chrX 34497113 34497457 -128102473 - LTR26B LTR ERV1 0 531 212 2340 77 0 7 chrX 34497457 34497767 -128102163 - AluSx SINE Alu 0 308 1 3479 123 2 38 chrX 34497767 34497972 -128101958 - LTR26B LTR ERV1 -319 212 1 823 110 68 0 chrX 34498072 34498218 -128101712 - Charlie5 DNA MER1_type 0 2619 2464 270 215 15 15 chrX 34498539 34498604 -128101326 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 433 249 68 68 chrX 34498612 34498849 -128101081 + MIR SINE MIR 26 262 0 277 263 118 0 chrX 34499565 34499641 -128100289 + L2 LINE L2 3187 3271 -1 1019 242 8 28 chrX 34499926 34500174 -128099756 + MLT1K LTR MaLR 344 586 -2 2314 104 3 0 chrX 34500185 34500484 -128099446 + AluSx SINE Alu 1 300 -12 363 78 0 0 chrX 34500605 34500656 -128099274 + (TATAG)n Simple_repeat Simple_repeat 2 52 0 944 153 11 28 chrX 34500911 34501087 -128098843 + MER5B DNA MER1_type 1 173 -5 596 205 18 0 chrX 34501338 34501450 -128098480 + MER81 DNA DNA 1 114 0 1192 195 217 7 chrX 34501654 34502064 -128097866 - LTR54B LTR ERV1 -2 496 1 2211 158 6 6 chrX 34502114 34502468 -128097462 + MLT1A1 LTR MaLR 10 363 -2 2213 93 21 0 chrX 34502484 34502774 -128097156 - AluSx SINE Alu -16 296 1 253 279 231 7 chrX 34502828 34502975 -128096955 - MER5A DNA MER1_type -9 180 1 606 293 76 26 chrX 34503094 34503322 -128096608 + L1M4 LINE L1 3545 3802 -2344 2021 86 39 25 chrX 34503322 34503626 -128096304 + AluSx SINE Alu 1 308 0 606 293 76 26 chrX 34503626 34503778 -128096152 + L1M4 LINE L1 3802 3945 -2201 274 346 0 0 chrX 34503797 34503904 -128096026 + MERVL LTR ERVL 3382 3488 -1997 5663 89 34 12 chrX 34503925 34504394 -128095536 - L1MA2 LINE L1 -1 7722 7226 2253 75 30 24 chrX 34504394 34504689 -128095241 - AluSp SINE Alu -16 297 1 5663 89 34 12 chrX 34504689 34505050 -128094880 - L1MA2 LINE L1 -497 7226 6874 2809 118 9 2 chrX 34505050 34505491 -128094439 - L1MA2 LINE L1 -1213 6352 5909 915 121 40 69 chrX 34505487 34505660 -128094270 - L1MA2 LINE L1 -7376 189 22 * 316 345 0 9 chrX 34505670 34505783 -128094147 + MERVL LTR ERVL 3481 3592 -2062 2340 135 15 81 chrX 34505849 34506307 -128093623 - MSTC LTR MaLR 0 428 1 4204 223 69 64 chrX 34506307 34507551 -128092379 - MSTC-int LTR MaLR 0 1651 402 1528 105 93 34 chrX 34507552 34508277 -128091653 + SVA Other Other 483 824 -562 2092 92 4 0 chrX 34508397 34508692 -128091238 + AluSx SINE Alu 22 317 0 814 168 0 0 chrX 34508700 34508819 -128091111 + FLAM_C SINE Alu 1 119 -24 882 95 0 0 chrX 34508819 34508945 -128090985 + (TAGA)n Simple_repeat Simple_repeat 1 126 0 693 259 40 43 chrX 34508969 34509247 -128090683 + L1ME4a LINE L1 5621 5897 -224 786 198 60 48 chrX 34509252 34509500 -128090430 + L1MC5 LINE L1 7133 7383 -578 1747 65 23 0 chrX 34509521 34509738 -128090192 + MER30 DNA MER1_type 9 230 0 1784 179 30 95 chrX 34509744 34509832 -128090098 + L1MC5 LINE L1 7390 7482 -479 2446 31 0 31 chrX 34509832 34510155 -128089775 + AluY SINE Alu 1 314 0 1784 179 30 95 chrX 34510155 34510636 -128089294 + L1MC5 LINE L1 7482 7923 -38 1007 199 95 34 chrX 34510663 34511108 -128088822 + LTR33 LTR ERVL 4 520 -1 219 36 0 0 chrX 34511659 34511687 -128088243 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1708 173 3 21 chrX 34511920 34512203 -128087727 - AluJo SINE Alu -34 278 1 887 225 68 114 chrX 34512225 34512638 -128087292 - L1MC4a LINE L1 -1841 5967 5574 584 168 65 28 chrX 34512638 34512724 -128087206 - MLT1E1 LTR MaLR -543 111 19 2427 148 18 48 chrX 34512724 34512779 -128087151 + MSTB LTR MaLR 1 56 -370 2260 116 0 7 chrX 34512779 34513081 -128086849 + AluSx SINE Alu 1 300 -12 2427 148 18 48 chrX 34513081 34513464 -128086466 + MSTB LTR MaLR 56 426 0 584 168 65 28 chrX 34513464 34513484 -128086446 - MLT1E1 LTR MaLR -635 19 1 1742 134 101 0 chrX 34513676 34513944 -128085986 - AluSx SINE Alu -17 295 1 2280 106 0 0 chrX 34515072 34515364 -128084566 - AluSx SINE Alu -20 292 1 781 151 0 0 chrX 34515911 34516030 -128083900 - AluJb SINE Alu -6 306 188 2062 104 0 31 chrX 34516087 34516375 -128083555 + AluSq SINE Alu 17 295 -18 1809 122 54 30 chrX 34516389 34516724 -128083206 - L1MD1 LINE L1 -6 6630 6288 1506 172 77 30 chrX 34516739 34517036 -128082894 - AluJo SINE Alu -1 311 1 3179 215 27 26 chrX 34517039 34517687 -128082243 - L1MD1 LINE L1 -840 5700 5066 2329 87 10 3 chrX 34517687 34517986 -128081944 + AluSq SINE Alu 1 301 -12 3179 215 27 26 chrX 34517986 34518238 -128081692 - L1MD1 LINE L1 -1474 5066 4816 * 5202 128 6 32 chrX 34518234 34518278 -128081652 - L1MB3 LINE L1 -3 6180 6136 2075 135 3 7 chrX 34518278 34518574 -128081356 - AluJb SINE Alu -17 295 1 5202 128 6 32 chrX 34518574 34519229 -128080701 - L1MB3 LINE L1 -47 6136 5466 219 69 0 0 chrX 34519229 34519258 -128080672 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1827 150 32 0 chrX 34519261 34519541 -128080389 - AluSx SINE Alu -23 289 1 5202 128 6 32 chrX 34519541 34519703 -128080227 - L1MB3 LINE L1 -719 5464 5337 4773 220 22 36 chrX 34519708 34519843 -128080087 - L1MD1 LINE L1 -1754 4786 4651 252 0 0 0 chrX 34519843 34519871 -128080059 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4773 220 22 36 chrX 34519871 34520076 -128079854 - L1MD1 LINE L1 -1889 4651 4445 2471 86 0 0 chrX 34520076 34520378 -128079552 - AluSg SINE Alu -8 302 1 4773 220 22 36 chrX 34520378 34521374 -128078556 - L1MD1 LINE L1 -2095 4445 3467 4944 180 80 18 chrX 34521417 34522531 -128077399 - L1MD1 LINE L1 -3462 3078 2034 2467 100 0 0 chrX 34522531 34522841 -128077089 + AluSx SINE Alu 1 310 -2 4944 180 80 18 chrX 34522841 34523674 -128076256 - L1MD1 LINE L1 -4506 2034 810 1986 151 16 28 chrX 34523905 34524342 -128075588 + L1PA3 LINE L1 5724 6155 0 528 219 0 8 chrX 34524356 34524479 -128075451 - L1M4 LINE L1 -1150 4996 4875 2280 124 20 18 chrX 34524499 34524893 -128075037 + L1MB8 LINE L1 5783 6177 -1 587 149 0 0 chrX 34524917 34525004 -128074926 - AluJb SINE Alu -32 280 194 2381 105 0 0 chrX 34525160 34525466 -128074464 + AluSx SINE Alu 1 306 -6 344 215 38 0 chrX 34525554 34525633 -128074297 + L1ME LINE L1 5524 5605 -516 2413 61 0 29 chrX 34525877 34526187 -128073743 + AluY SINE Alu 1 301 -10 1168 248 12 93 chrX 34526290 34526710 -128073220 + MLT1J LTR MaLR 118 503 -8 198 255 0 39 chrX 34526841 34526892 -128073038 + L2 LINE L2 3206 3254 -18 1867 152 140 8 chrX 34527143 34527499 -128072431 + MER57A LTR ERV1 1 403 0 629 126 50 17 chrX 34527499 34527618 -128072312 + L1MA9 LINE L1 6151 6273 -39 3404 212 71 78 chrX 34528499 34528944 -128070986 - L1MC4 LINE L1 0 8042 7595 2379 77 47 0 chrX 34528944 34529242 -128070688 - AluSx SINE Alu 0 312 1 3404 212 71 78 chrX 34529242 34529941 -128069989 - L1MC4 LINE L1 -447 7595 6907 1027 178 76 10 chrX 34529941 34530138 -128069792 - MER6B DNA MER2_type 0 210 1 3404 212 71 78 chrX 34530138 34530306 -128069624 - L1MC4 LINE L1 -1135 6907 6739 2305 78 3 0 chrX 34530314 34530650 -128069280 - AluSp SINE Alu 0 337 1 2289 112 0 0 chrX 34530946 34531240 -128068690 - AluSx SINE Alu -18 294 1 29 47 0 0 chrX 34531705 34531748 -128068182 + AT_rich Low_complexity Low_complexity 1 43 0 1399 155 30 11 chrX 34532000 34532264 -128067666 - L1MC1 LINE L1 0 6333 6065 1262 96 5 16 chrX 34532266 34532453 -128067477 + THE1C-int LTR MaLR 1390 1574 -6 1782 165 40 40 chrX 34532458 34532833 -128067097 + THE1C LTR MaLR 1 375 0 13571 126 23 1 chrX 34532833 34534751 -128065179 - L1M1 LINE L1 -5583 1982 22 278 268 105 59 chrX 34534991 34535144 -128064786 + MLT1I LTR MaLR 75 234 -175 1867 102 70 0 chrX 34535337 34535593 -128064337 + L1M1 LINE L1 920 1193 -6372 271 204 56 21 chrX 34535602 34535654 -128064276 + (TA)n Simple_repeat Simple_repeat 2 51 -97 2481 67 103 3 chrX 34535654 34535985 -128063945 + THE1B LTR MaLR 1 364 0 271 204 56 21 chrX 34535985 34536074 -128063856 + (TA)n Simple_repeat Simple_repeat 51 148 0 2333 104 0 22 chrX 34536578 34536895 -128063035 - AluSx SINE Alu -2 310 1 1266 272 12 26 chrX 34537040 34537125 -128062805 + LTR16C LTR ERVL 151 236 -255 4607 140 97 13 chrX 34537125 34537920 -128062010 - MER6 DNA MER2_type -3 862 1 1266 272 12 26 chrX 34537920 34538180 -128061750 + LTR16C LTR ERVL 236 491 0 261 246 62 0 chrX 34538513 34538578 -128061352 - L2 LINE L2 0 3313 3245 964 264 61 0 chrX 34539056 34539287 -128060643 + HERVL LTR ERVL 4036 4280 -1374 994 295 73 20 chrX 34539287 34539877 -128060053 - L1MC1 LINE L1 -747 5399 4836 2542 74 0 3 chrX 34539877 34540187 -128059743 + AluSq SINE Alu 1 309 -4 994 295 73 20 chrX 34540187 34540691 -128059239 - L1MC1 LINE L1 -1310 4836 4360 1915 118 22 12 chrX 34540703 34541024 -128058906 + L1 LINE L1 4519 4842 -1304 393 138 0 0 chrX 34541185 34541243 -128058687 + MLT1B LTR MaLR 333 390 0 4955 164 24 71 chrX 34541333 34542441 -128057489 + L1MD2 LINE L1 5035 6193 -166 2331 110 3 0 chrX 34542441 34542751 -128057179 + AluSq SINE Alu 1 311 -2 4955 164 24 71 chrX 34542751 34542879 -128057051 + L1MD2 LINE L1 6193 6208 -151 1585 158 75 22 chrX 34542879 34543157 -128056773 + AluJo SINE Alu 2 294 -18 4955 164 24 71 chrX 34543157 34543256 -128056674 + L1MD2 LINE L1 6208 6310 -49 3728 127 81 55 chrX 34543256 34543949 -128055981 - MER50 LTR ERV1 -23 711 1 2454 82 0 19 chrX 34544143 34544461 -128055469 - AluSx SINE Alu 0 312 1 4156 87 9 2 chrX 34544678 34545228 -128054702 + MER41A LTR ERV1 1 554 0 311 335 116 55 chrX 34546206 34546516 -128053414 - L2 LINE L2 -28 3244 2916 423 297 0 104 chrX 34546524 34546706 -128053224 + LTR16B LTR ERVL 4 166 -298 1132 251 86 65 chrX 34546708 34547045 -128052885 - MER41C LTR ERV1 -9 545 191 2183 90 7 13 chrX 34547045 34547346 -128052584 - AluSx SINE Alu -13 299 1 1132 251 86 65 chrX 34547346 34547542 -128052388 - MER41C LTR ERV1 -363 191 1 894 319 6 16 chrX 34547542 34547855 -128052075 + LTR16B LTR ERVL 155 464 0 648 186 8 17 chrX 34548026 34548144 -128051786 - LTR8 LTR ERV1 0 691 575 462 49 0 0 chrX 34548147 34548208 -128051722 + (TG)n Simple_repeat Simple_repeat 2 62 0 546 133 0 0 chrX 34548208 34548283 -128051647 - AluSg/x SINE Alu -27 283 209 3450 116 37 85 chrX 34548296 34548943 -128050987 - LTR8A LTR ERV1 -111 616 1 2308 106 0 3 chrX 34549058 34549360 -128050570 + AluSg SINE Alu 1 301 -9 243 223 25 25 chrX 34550861 34550982 -128048948 + (CCG)n Simple_repeat Simple_repeat 1 121 0 251 337 0 0 chrX 34551040 34551135 -128048795 + (CTG)n Simple_repeat Simple_repeat 2 96 0 1534 228 24 9 chrX 34551401 34551730 -128048200 + LTR40a LTR ERVL 1 334 -185 948 184 65 10 chrX 34551741 34551942 -128047988 - REP3 LTR ERV -37 525 314 195 33 67 0 chrX 34551945 34551975 -128047955 + CT-rich Low_complexity Low_complexity 1 180 0 2418 79 7 7 chrX 34551975 34552280 -128047650 - AluSx SINE Alu 0 340 6 594 173 15 68 chrX 34552281 34552414 -128047516 - REP3 LTR ERV -236 326 201 851 243 11 11 chrX 34554400 34554589 -128045341 - REP3 LTR ERV -373 189 1 635 197 84 34 chrX 34554590 34554768 -128045162 + LTR40b LTR ERVL 276 462 0 8141 226 52 68 chrX 34554775 34554860 -128045070 + HERVL40 LTR ERVL 10 95 -5435 2091 146 0 0 chrX 34554860 34555161 -128044769 + AluJb SINE Alu 1 301 -11 8141 226 52 68 chrX 34555161 34557269 -128042661 + HERVL40 LTR ERVL 95 2167 -3363 * 10948 217 49 24 chrX 34557254 34558911 -128041019 + HERVL40 LTR ERVL 2036 1587 -1450 2322 82 0 33 chrX 34558911 34559216 -128040714 + AluSc SINE Alu 1 295 -14 10948 217 49 24 chrX 34559216 34560000 -128039930 + HERVL40 LTR ERVL 1586 2349 -688 314 253 114 30 chrX 34560529 34560695 -128039235 - L1MEd LINE L1 -5898 221 42 2166 110 0 36 chrX 34560712 34561045 -128038885 + AluSx SINE Alu 1 312 0 280 202 47 78 chrX 34561676 34561805 -128038125 - Charlie2 DNA MER1_type -5 2857 2733 4761 45 30 0 chrX 34561913 34562485 -128037445 - LTR10C LTR ERV1 -2 589 1 3996 127 28 68 chrX 34562488 34562628 -128037302 - LTR8 LTR ERV1 -8 683 539 1994 141 0 20 chrX 34562628 34562933 -128036997 - AluJb SINE Alu -13 299 1 3996 127 28 68 chrX 34562933 34563503 -128036427 - LTR8 LTR ERV1 -152 539 1 516 270 91 34 chrX 34563539 34563807 -128036123 - MLT1J1 LTR MaLR -175 271 26 552 269 52 21 chrX 34564200 34564393 -128035537 - HsTC2 DNA Tc2 -276 1622 1248 1200 222 47 35 chrX 34564395 34564540 -128035390 - HsTC2 DNA Tc2 -1555 343 201 2323 98 0 3 chrX 34564540 34564836 -128035094 - AluSx SINE Alu -17 295 1 1200 222 47 35 chrX 34564836 34565028 -128034902 - HsTC2 DNA Tc2 -1697 201 2 9323 89 30 1 chrX 34565306 34566557 -128033373 - HSMAR1 DNA Mariner 0 1287 1 542 279 118 43 chrX 34567003 34567325 -128032605 - MLT1J1 LTR MaLR -5 441 96 1754 173 68 57 chrX 34567326 34567779 -128032151 - LTR56 LTR ERV1 0 467 9 2390 95 5 97 chrX 34567800 34568212 -128031718 + MER51B LTR ERV1 1 374 -3 1261 94 35 0 chrX 34568214 34568384 -128031546 + MER51B-int LTR ERV1 1 176 -7640 * 9307 143 31 23 chrX 34568372 34569987 -128029943 + MER51B-int LTR ERV1 329 1956 -5860 2484 68 6 17 chrX 34569975 34570327 -128029603 + MER51B-int LTR ERV1 2218 2565 -5251 * 1515 230 27 18 chrX 34570491 34570822 -128029108 - L1MDa LINE L1 -5981 559 226 698 179 26 0 chrX 34570841 34570958 -128028972 - L1MDa LINE L1 -6406 134 15 906 224 20 43 chrX 34570961 34571216 -128028714 - L1ME3A LINE L1 -1 6169 5921 23 92 0 0 chrX 34571292 34571357 -128028573 + AT_rich Low_complexity Low_complexity 1 65 0 438 248 64 14 chrX 34571394 34571535 -128028395 - MIR SINE MIR -71 191 44 941 123 34 7 chrX 34572178 34572324 -128027606 - AluJo SINE Alu -162 150 1 952 231 89 6 chrX 34572663 34573084 -128026846 - LTR33 LTR ERVL 0 521 13 188 83 0 28 chrX 34573160 34573196 -128026734 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2300 114 7 0 chrX 34573379 34573732 -128026198 - AluSx SINE Alu 0 355 1 840 160 0 0 chrX 34574205 34574330 -128025600 + FLAM_C SINE Alu 1 125 -18 2156 129 0 7 chrX 34574455 34574758 -128025172 - AluSq SINE Alu -12 301 1 2324 101 0 3 chrX 34575249 34575546 -128024384 + AluSx SINE Alu 1 296 -16 370 264 185 34 chrX 34575980 34576450 -128023480 + L1MB2 LINE L1 4729 5269 -877 329 221 39 0 chrX 34576476 34576553 -128023377 + MER116 DNA Mariner 1 80 0 4475 117 33 9 chrX 34576761 34577451 -128022479 + L1MB2 LINE L1 5463 6169 -2 513 298 120 35 chrX 34577480 34577808 -128022122 + L1MC4a LINE L1 5438 5807 -2001 2576 84 20 3 chrX 34577808 34578155 -128021775 - L1PA10 LINE L1 -4 6164 5812 513 298 120 35 chrX 34578155 34578226 -128021704 + L1MC4a LINE L1 5807 5871 -1937 1716 156 143 3 chrX 34578347 34578668 -128021262 + MLT2D LTR ERVL 1 366 -48 1063 233 0 0 chrX 34578668 34578883 -128021047 + L1MC/D LINE L1 4042 4256 -1890 2455 84 0 3 chrX 34579990 34580298 -128019632 - AluSg SINE Alu -3 307 1 4234 198 57 52 chrX 34581343 34582548 -128017382 + L1MC/D LINE L1 4284 5477 -753 5793 128 19 5 chrX 34582548 34583698 -128016232 + L1PA16 LINE L1 4998 6166 0 2099 115 11 80 chrX 34583701 34583849 -128016081 + Tigger1 DNA MER2_type 2078 2235 -183 789 160 15 0 chrX 34583849 34583980 -128015950 - FLAM_C SINE Alu 0 133 1 2099 115 11 80 chrX 34583980 34584195 -128015735 + Tigger1 DNA MER2_type 2235 2416 -2 2274 129 0 0 chrX 34584629 34584940 -128014990 + AluSx SINE Alu 1 311 -1 1929 139 7 4 chrX 34585065 34585377 -128014553 - AluJb SINE Alu 0 313 1 2269 120 7 0 chrX 34585893 34586201 -128013729 - AluSx SINE Alu -2 310 1 3413 65 23 0 chrX 34586237 34586671 -128013259 + MLT2A1 LTR ERVL 1 444 0 263 294 108 0 chrX 34586803 34586905 -128013025 - L2 LINE L2 -2 3270 3158 478 310 13 6 chrX 34587381 34587539 -128012391 - MER5B DNA MER1_type -16 162 4 371 278 67 43 chrX 34588132 34588306 -128011624 - MIR SINE MIR -63 145 4 1346 278 19 45 chrX 34588417 34588656 -128011274 + LTR16B LTR ERVL 9 233 -231 2204 88 7 44 chrX 34588656 34588982 -128010948 - AluSx SINE Alu 0 315 1 1346 278 19 45 chrX 34588982 34589208 -128010722 + LTR16B LTR ERVL 233 463 -1 1024 174 24 19 chrX 34589954 34590166 -128009764 - AluJo SINE Alu -2 310 98 2384 100 0 3 chrX 34590285 34590594 -128009336 + AluSg SINE Alu 1 308 -2 1435 224 140 21 chrX 34590613 34590979 -128008951 + LTR16C LTR ERVL 1 429 -62 2433 108 34 3 chrX 34590979 34591332 -128008598 + THE1B LTR MaLR 1 364 0 1435 224 140 21 chrX 34591332 34591402 -128008528 + LTR16C LTR ERVL 429 489 -2 2276 109 3 0 chrX 34592753 34593056 -128006874 - AluSx SINE Alu -8 304 1 652 211 126 0 chrX 34593159 34593349 -128006581 - MIR SINE MIR 0 262 49 2312 91 10 3 chrX 34593547 34593855 -128006075 - AluSx SINE Alu 0 312 3 1040 271 121 15 chrX 34594100 34594506 -128005424 - MLT1L LTR MaLR -14 601 153 242 316 201 22 chrX 34595104 34595243 -128004687 - MIR SINE MIR -50 212 49 315 295 49 47 chrX 34595341 34595525 -128004405 + MIR SINE MIR 2 187 -61 1660 170 52 14 chrX 34596039 34596159 -128003771 + AluJo SINE Alu 2 116 -196 2377 95 7 0 chrX 34596159 34596464 -128003466 + AluSg SINE Alu 1 307 -3 1660 170 52 14 chrX 34596464 34596632 -128003298 + AluJo SINE Alu 116 301 -11 2489 211 61 2 chrX 34596647 34597173 -128002757 - L1ME3A LINE L1 0 6170 5614 241 253 42 32 chrX 34597512 34597607 -128002323 + MIR SINE MIR 40 135 -73 3554 109 0 4 chrX 34599179 34599683 -128000247 + L1PA16 LINE L1 5656 6157 -9 2585 65 3 0 chrX 34599768 34600077 -127999853 + AluSp SINE Alu 1 310 -3 2052 150 0 10 chrX 34600323 34600623 -127999307 - AluJo SINE Alu -15 297 1 6768 106 23 43 chrX 34600692 34601763 -127998167 + L1MA6 LINE L1 4723 5747 -553 2145 121 0 16 chrX 34601763 34602068 -127997862 + AluSx SINE Alu 1 300 -12 6768 106 23 43 chrX 34602068 34602610 -127997320 + L1MA6 LINE L1 5747 6299 -1 235 288 12 25 chrX 34602618 34602698 -127997232 - L1ME LINE L1 -312 5858 5780 192 245 19 0 chrX 34603628 34603681 -127996249 - MIR3 SINE MIR -16 192 139 972 311 168 18 chrX 34603687 34604606 -127995324 - L2 LINE L2 -2 3270 2238 2212 150 40 67 chrX 34604607 34605053 -127994877 - Tigger2a DNA MER2_type 0 434 1 229 289 0 13 chrX 34605087 34605163 -127994767 - LTR33 LTR ERVL -4 517 443 * 305 179 18 122 chrX 34605155 34605290 -127994640 - MLT1H LTR MaLR -10 533 281 1481 304 11 4 chrX 34605336 34605916 -127994014 - HERVL LTR ERVL -1368 4286 3700 2499 136 42 45 chrX 34605916 34606343 -127993587 + MSTC LTR MaLR 1 426 -2 2308 207 11 8 chrX 34606343 34606812 -127993118 + MSTC-int LTR MaLR 2 471 -1264 26 0 0 0 chrX 34606812 34606838 -127993092 + AT_rich Low_complexity Low_complexity 1 26 0 6017 96 39 26 chrX 34606838 34607758 -127992172 - SVA Other Other 0 1386 455 1115 88 0 7 chrX 34607881 34608028 -127991902 + MER51B-int LTR ERV1 4731 4876 -2661 * 1982 81 186 134 chrX 34608026 34608156 -127991774 + MER51B-int LTR ERV1 5446 5568 -1969 2012 142 3 0 chrX 34608156 34608444 -127991486 - AluSx SINE Alu -13 299 11 1982 81 186 134 chrX 34608444 34608611 -127991319 + MER51B-int LTR ERV1 5568 5725 -1812 234 51 0 0 chrX 34608611 34608650 -127991280 - Alu SINE Alu 0 301 263 1982 81 186 134 chrX 34608650 34608782 -127991148 + MER51B-int LTR ERV1 5725 5938 -1599 * 4637 128 118 100 chrX 34608780 34609557 -127990373 + MER51B-int LTR ERV1 6757 7559 -257 2499 78 0 3 chrX 34609557 34609863 -127990067 - AluSq SINE Alu -8 305 1 4637 128 118 100 chrX 34609863 34610126 -127989804 + MER51B-int LTR ERV1 7559 7816 0 2369 99 5 94 chrX 34610127 34610541 -127989389 + MER51B LTR ERV1 1 377 0 254 260 250 0 chrX 34610541 34610641 -127989289 - MLT1J LTR MaLR -386 125 1 * 2320 162 63 103 chrX 34610641 34611378 -127988552 - Charlie2 DNA MER1_type -123 2739 2032 1502 231 52 28 chrX 34611701 34612239 -127987691 + L1M4 LINE L1 4457 5007 -1139 2439 69 0 0 chrX 34612262 34612552 -127987378 - AluY SINE Alu -21 290 1 1733 145 6 31 chrX 34612827 34613176 -127986754 - MER61C LTR ERV1 0 434 1 370 271 100 37 chrX 34613803 34613965 -127985965 + LTR33A LTR ERVL 17 162 -361 1988 122 3 44 chrX 34614104 34614423 -127985507 - AluSx SINE Alu 0 307 1 1684 150 5 125 chrX 34614759 34615152 -127984778 + MER7A DNA MER2_type 2 345 -1 4275 94 25 102 chrX 34615500 34616248 -127983682 + LTR8 LTR ERV1 1 691 0 4049 177 50 19 chrX 34616651 34617452 -127982478 + LTR1B LTR ERV1 1 826 0 20919 159 21 15 chrX 34617452 34622059 -127977871 + HUERS-P2 LTR ERV1 1 4871 -417 15570 185 22 19 chrX 34622068 34624517 -127975413 - L1PB1 LINE L1 0 6867 4427 2187 95 10 14 chrX 34624517 34624813 -127975117 - AluSc SINE Alu -14 295 1 15570 185 22 19 chrX 34624813 34626332 -127973598 - L1PB1 LINE L1 -2440 4427 2914 2517 77 0 0 chrX 34626332 34626643 -127973287 - AluY SINE Alu 0 311 1 15570 185 22 19 chrX 34626643 34628260 -127971670 - L1PB1 LINE L1 -3953 2914 1094 1794 148 53 18 chrX 34628264 34628601 -127971329 - L1PB1 LINE L1 -5817 1046 698 11856 145 2 8 chrX 34628601 34628789 -127971141 + HUERS-P2 LTR ERV1 4859 5047 -2044 561 30 0 0 chrX 34628789 34628856 -127971074 + (TC)n Simple_repeat Simple_repeat 2 68 0 2232 67 7 18 chrX 34628856 34629140 -127970790 - AluSp SINE Alu -32 281 1 11856 145 2 8 chrX 34629140 34630706 -127969224 + HUERS-P2 LTR ERV1 5045 6603 -488 2204 135 9 15 chrX 34630727 34630741 -127969189 + HUERS-P2 LTR ERV1 2766 2779 -309 2334 99 10 0 chrX 34630741 34631043 -127968887 - AluSx SINE Alu -7 305 1 2204 135 9 15 chrX 34631043 34631353 -127968577 + HUERS-P2 LTR ERV1 2779 3088 0 3819 184 48 27 chrX 34631353 34632162 -127967768 + LTR1B LTR ERV1 1 826 0 250 237 53 13 chrX 34632457 34632533 -127967397 + LTR16C LTR ERVL 153 231 -260 * 1079 129 169 0 chrX 34632531 34632732 -127967198 + LTR40b LTR ERVL 228 462 0 515 252 0 22 chrX 34632886 34632992 -127966938 + LTR16C LTR ERVL 360 464 -27 2602 109 3 8 chrX 34632992 34633358 -127966572 - THE1B LTR MaLR 0 364 1 515 252 0 22 chrX 34633358 34633386 -127966544 + LTR16C LTR ERVL 464 491 0 2076 137 0 0 chrX 34634044 34634367 -127965563 - AluSx SINE Alu 0 323 1 564 232 129 46 chrX 34634641 34634882 -127965048 - MIR SINE MIR -1 261 1 2317 118 3 0 chrX 34635252 34635557 -127964373 - AluSx SINE Alu -6 306 1 255 31 0 0 chrX 34635652 34635684 -127964246 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1016 190 58 0 chrX 34635719 34635924 -127964006 + MIR SINE MIR 27 243 -19 2522 54 0 0 chrX 34636551 34636846 -127963084 - AluY SINE Alu -16 295 1 1519 247 92 32 chrX 34636910 34637670 -127962260 + L1MC5 LINE L1 6962 7660 -301 2279 87 24 0 chrX 34637670 34637957 -127961973 + AluSg SINE Alu 1 294 -16 1519 247 92 32 chrX 34637957 34638247 -127961683 + L1MC5 LINE L1 7660 7931 -30 * 1583 133 74 23 chrX 34638228 34638537 -127961393 + L1MD3 LINE L1 7661 7985 -10 665 344 57 25 chrX 34638908 34639350 -127960580 - HAL1b LINE L1 -798 550 95 1929 120 60 27 chrX 34640330 34640630 -127959300 - AluSx SINE Alu -2 310 1 541 294 97 4 chrX 34640692 34640920 -127959010 + MIR SINE MIR 11 259 -3 3459 210 59 36 chrX 34640940 34641888 -127958042 + L1MB1 LINE L1 3466 4435 -1711 1079 152 8 91 chrX 34641879 34642122 -127957808 + L1MB1 LINE L1 5047 5269 -877 * 2490 146 2 38 chrX 34642575 34643026 -127956904 + L1MB1 LINE L1 5729 6163 -5 266 327 73 0 chrX 34643035 34643145 -127956785 - LTR16A LTR ERVL -323 127 10 1073 288 91 32 chrX 34643147 34643250 -127956680 + L3 LINE CR1 629 724 -853 2475 142 36 14 chrX 34643250 34643667 -127956263 + MSTB LTR MaLR 1 426 0 1073 288 91 32 chrX 34643667 34644088 -127955842 + L3 LINE CR1 724 1184 -393 783 188 231 35 chrX 34644186 34644415 -127955515 - L1MD2 LINE L1 -2 6357 6084 4115 201 24 15 chrX 34644418 34645706 -127954224 - L1MDa LINE L1 -2920 3620 2326 5051 80 22 146 chrX 34645726 34646396 -127953534 + Tigger3(Golem) DNA MER2_type 1 752 -2277 1025 131 0 0 chrX 34646396 34646533 -127953397 + AluSq/x SINE Alu 3 139 -173 413 117 0 0 chrX 34646534 34646594 -127953336 + AluS SINE Alu 230 289 -20 5051 80 22 146 chrX 34646594 34647121 -127952809 + Tigger3(Golem) DNA MER2_type 751 3028 -1 7714 180 93 12 chrX 34647121 34649084 -127950846 - L1MDa LINE L1 -4212 2328 18 384 304 15 22 chrX 34649095 34649230 -127950700 + L2 LINE L2 3178 3311 -2 219 308 6 116 chrX 34649233 34649304 -127950626 + L3 LINE CR1 1206 1249 -328 2220 113 6 3 chrX 34649304 34649615 -127950315 - AluSx SINE Alu 0 312 1 219 308 6 116 chrX 34649615 34649715 -127950215 + L3 LINE CR1 1249 1358 -219 288 259 25 0 chrX 34649727 34649808 -127950122 - MER103 DNA DNA -52 114 32 1930 126 0 25 chrX 34649951 34650236 -127949694 + AluSx SINE Alu 1 278 -34 337 88 12 50 chrX 34650237 34650317 -127949613 + (GGAGA)n Simple_repeat Simple_repeat 5 81 0 703 220 17 106 chrX 34650408 34650564 -127949366 - LTR16C LTR ERVL 0 491 361 2086 33 4 8 chrX 34650564 34650805 -127949125 + AluY SINE Alu 53 292 -19 703 220 17 106 chrX 34650805 34650884 -127949046 - LTR16C LTR ERVL -130 361 277 2463 67 0 3 chrX 34851307 34851604 -127748326 - AluY SINE Alu -14 297 2 921 143 0 0 chrX 34852368 34852494 -127747436 - AluSq/x SINE Alu -186 126 1 2341 75 0 0 chrX 34852555 34852860 -127747070 - AluSg SINE Alu 0 305 1 2274 108 0 16 chrX 34852920 34853236 -127746694 - AluSx SINE Alu -1 311 1 2519 86 0 0 chrX 34853907 34854211 -127745719 + AluSx SINE Alu 1 304 -8 2209 176 17 28 chrX 34854670 34855137 -127744793 + L1MB5 LINE L1 5713 6174 0 2265 111 0 3 chrX 34855153 34855451 -127744479 + AluSx SINE Alu 13 309 -3 1802 143 0 39 chrX 34855511 34855797 -127744133 - AluJb SINE Alu -20 292 18 780 82 65 80 chrX 34855797 34855980 -127743950 - L1MA2 LINE L1 -177 6127 5938 889 127 8 8 chrX 34855991 34856125 -127743805 - AluJo SINE Alu -178 134 1 2374 84 3 0 chrX 34856137 34856444 -127743486 - AluSx SINE Alu 0 308 1 1207 111 32 5 chrX 34857749 34857938 -127741992 - AluSg/x SINE Alu 0 310 117 2186 97 0 58 chrX 34857939 34858268 -127741662 - AluSq SINE Alu -3 310 1 234 0 0 0 chrX 34858275 34858301 -127741629 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2257 89 7 0 chrX 34858303 34858583 -127741347 - AluSp SINE Alu -31 282 1 2611 58 3 3 chrX 34858614 34858923 -127741007 + AluSp SINE Alu 1 309 -4 1937 132 14 0 chrX 34858924 34859204 -127740726 + AluSx SINE Alu 16 299 -13 245 224 0 0 chrX 34859231 34859280 -127740650 + MER69 DNA AcHobo 21 69 -2457 698 196 367 0 chrX 34859390 34859630 -127740300 + MER69 DNA AcHobo 330 657 -1869 1918 153 3 26 chrX 34859637 34859950 -127739980 + AluJo SINE Alu 7 312 0 3199 178 46 70 chrX 34860035 34860563 -127739367 + MER69 DNA AcHobo 1654 2193 -333 2428 92 0 13 chrX 34860563 34860877 -127739053 - AluSx SINE Alu -2 310 1 3199 178 46 70 chrX 34860877 34861169 -127738761 + MER69 DNA AcHobo 2193 2453 -73 922 110 0 22 chrX 34861169 34861305 -127738625 - FLAM_C SINE Alu 0 133 1 3199 178 46 70 chrX 34861305 34861376 -127738554 + MER69 DNA AcHobo 2453 2524 -2 247 288 0 27 chrX 34861376 34861449 -127738481 + (CATG)n Simple_repeat Simple_repeat 1 71 0 1809 93 86 32 chrX 34862406 34862685 -127737245 + AluSx SINE Alu 1 294 -18 251 220 0 0 chrX 34862804 34862863 -127737067 - MLT1H LTR MaLR -4 545 487 1904 138 7 7 chrX 34862864 34863153 -127736777 - AluJo SINE Alu -11 301 13 940 110 0 8 chrX 34863153 34863280 -127736650 - AluJo SINE Alu -174 138 13 874 249 185 25 chrX 34863280 34863674 -127736256 - MLT1H LTR MaLR -53 496 40 2404 82 7 23 chrX 34863708 34864014 -127735916 - AluSc SINE Alu -8 301 1 450 81 68 0 chrX 34864028 34864102 -127735828 - L1MB3 LINE L1 -9 6174 6096 1646 149 0 4 chrX 34864129 34864370 -127735560 - AluJo SINE Alu -72 240 1 1297 193 15 45 chrX 34864384 34864512 -127735418 - MER21A LTR ERV1 -472 459 342 2498 88 3 0 chrX 34864512 34864818 -127735112 + AluSx SINE Alu 1 307 -5 1297 193 15 45 chrX 34864818 34864954 -127734976 - MER21A LTR ERV1 -589 342 203 2450 150 17 37 chrX 34864954 34865263 -127734667 - MER65C LTR ERV1 0 461 162 2296 112 3 6 chrX 34865263 34865577 -127734353 + AluSq SINE Alu 1 313 0 2450 150 17 37 chrX 34865577 34865727 -127734203 - MER65C LTR ERV1 -299 162 11 315 130 0 37 chrX 34865727 34865781 -127734149 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 744 88 10 78 chrX 34865783 34865975 -127733955 + (TTTCC)n Simple_repeat Simple_repeat 1 179 0 186 255 0 0 chrX 34865975 34866026 -127733904 + CT-rich Low_complexity Low_complexity 2 52 0 1656 157 50 4 chrX 34866031 34866293 -127733637 - AluJb SINE Alu -38 274 1 295 111 0 111 chrX 34866313 34866343 -127733587 - MER39 LTR ERV1 -371 336 315 2293 103 3 3 chrX 34866343 34866643 -127733287 - AluSc SINE Alu -9 300 1 295 111 0 111 chrX 34866643 34866675 -127733255 - MER39 LTR ERV1 -392 315 281 277 26 0 0 chrX 34866674 34866712 -127733218 - MSTB1 LTR MaLR -45 387 350 * 1543 158 196 22 chrX 34866750 34867112 -127732818 + MSTA LTR MaLR 4 428 0 434 117 115 81 chrX 34867119 34867229 -127732701 - MER21A LTR ERV1 -541 166 70 2200 122 0 7 chrX 34867297 34867626 -127732304 - AluSx SINE Alu 0 327 1 346 153 0 28 chrX 34867672 34867744 -127732186 - MER21A LTR ERV1 -861 70 1 2208 101 3 41 chrX 34867813 34868129 -127731801 + AluSp SINE Alu 1 304 -9 3137 124 51 42 chrX 34868132 34868338 -127731592 + MER21B LTR ERV1 308 511 -352 2479 48 28 3 chrX 34868338 34868629 -127731301 - AluY SINE Alu -13 298 1 3137 124 51 42 chrX 34868629 34868972 -127730958 + MER21B LTR ERV1 511 862 -1 206 229 0 0 chrX 34868992 34869008 -127730922 + A-rich Low_complexity Low_complexity 1 16 -32 2299 112 3 6 chrX 34869008 34869321 -127730609 + AluSx SINE Alu 1 312 0 206 229 0 0 chrX 34869321 34869352 -127730578 + A-rich Low_complexity Low_complexity 15 48 0 2432 102 0 0 chrX 34869775 34870080 -127729850 + AluSx SINE Alu 1 305 -7 537 265 32 124 chrX 34870158 34870818 -127729112 - LTR38B LTR ERV1 0 610 12 1795 161 7 0 chrX 34870818 34871092 -127728838 - AluJb SINE Alu -36 276 1 1856 137 20 20 chrX 34871143 34871443 -127728487 + AluJo SINE Alu 1 300 -12 2282 102 0 3 chrX 34871516 34871837 -127728093 + AluSx SINE Alu 1 320 0 2536 64 6 13 chrX 34871838 34872151 -127727779 + AluY SINE Alu 1 311 0 2124 129 26 19 chrX 34872161 34872263 -127727667 + AluJb SINE Alu 1 101 -211 1906 103 106 32 chrX 34872263 34872602 -127727328 + THE1B LTR MaLR 1 364 0 2124 129 26 19 chrX 34872602 34872809 -127727121 + AluJb SINE Alu 101 312 0 2553 69 3 7 chrX 34873239 34873545 -127726385 - AluSp SINE Alu -8 305 1 1214 146 0 0 chrX 34873748 34873926 -127726004 - AluSg/x SINE Alu 0 310 133 2324 98 0 3 chrX 34874047 34874343 -127725587 + AluSx SINE Alu 1 295 -17 4224 126 10 27 chrX 34874426 34874847 -127725083 + L1MC1 LINE L1 5630 6036 -297 2040 156 0 6 chrX 34874847 34875161 -127724769 + AluJb SINE Alu 1 312 0 4224 126 10 27 chrX 34875161 34875440 -127724490 + L1MC1 LINE L1 6036 6318 -15 2160 92 10 44 chrX 34875447 34875591 -127724339 + AluSx SINE Alu 1 131 -181 2444 92 3 0 chrX 34875591 34875897 -127724033 + AluSp SINE Alu 1 307 -6 2160 92 10 44 chrX 34875897 34876046 -127723884 + AluSx SINE Alu 131 284 -28 180 0 0 0 chrX 34876046 34876066 -127723864 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 258 32 0 0 chrX 34876065 34876096 -127723834 + (TG)n Simple_repeat Simple_repeat 2 32 0 2178 138 0 19 chrX 34876103 34876421 -127723509 + AluSx SINE Alu 1 312 0 2079 94 65 0 chrX 34876431 34876706 -127723224 + AluSp SINE Alu 1 293 -20 28 29 0 0 chrX 34876706 34876741 -127723189 + AT_rich Low_complexity Low_complexity 1 35 0 1900 174 7 3 chrX 34876753 34877086 -127722844 + AluJo SINE Alu 1 334 0 2394 99 13 0 chrX 34877133 34877437 -127722493 + AluSx SINE Alu 1 308 -4 476 273 66 27 chrX 34877531 34877714 -127722216 + MLT1H LTR MaLR 102 291 -258 352 211 33 27 chrX 34877741 34877862 -127722068 + MLT1H LTR MaLR 305 545 -4 33 20 0 20 chrX 34877886 34877904 -127722026 + AT_rich Low_complexity Low_complexity 1 18 -32 2566 74 3 0 chrX 34877904 34878215 -127721715 + AluSp SINE Alu 2 313 0 33 20 0 20 chrX 34878215 34878247 -127721683 + AT_rich Low_complexity Low_complexity 18 50 0 268 141 141 113 chrX 34878247 34878299 -127721631 + L1MC5 LINE L1 7786 7835 -126 1767 132 71 25 chrX 34878299 34878579 -127721351 - AluJo SINE Alu -19 293 1 268 141 141 113 chrX 34878579 34878668 -127721262 + L1MC5 LINE L1 7835 7931 -30 2555 41 17 0 chrX 34878803 34879098 -127720832 - AluY SINE Alu -11 300 1 277 139 47 12 chrX 34880146 34880232 -127719698 + GA-rich Low_complexity Low_complexity 2 90 0 2364 136 66 11 chrX 34881160 34881602 -127718328 - L1MC1 LINE L1 0 6333 5868 2363 109 0 0 chrX 34882242 34882545 -127717385 - AluSx SINE Alu -9 303 1 2067 131 13 13 chrX 34882570 34882882 -127717048 - AluJo SINE Alu 0 312 1 204 125 0 0 chrX 34882890 34882922 -127717008 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2648 56 3 0 chrX 34882929 34883234 -127716696 - AluSp SINE Alu -6 307 2 278 278 0 62 chrX 34883260 34883357 -127716573 - AluYb8 SINE Alu -101 207 119 2472 89 0 0 chrX 34883683 34883985 -127715945 - AluSx SINE Alu -2 310 9 588 230 133 6 chrX 34884019 34884184 -127715746 - HERVL LTR ERVL -2518 3136 2951 1439 130 5 5 chrX 34884184 34884391 -127715539 - AluJb SINE Alu -22 290 84 2444 93 0 0 chrX 34884417 34884728 -127715202 - AluY SINE Alu 0 311 1 2019 132 27 3 chrX 34884942 34885237 -127714693 + AluJo SINE Alu 1 302 -10 942 125 20 0 chrX 34885237 34885389 -127714541 - MER68 LTR ERV1 -407 155 1 2335 95 17 0 chrX 34885530 34885824 -127714106 - AluSx SINE Alu -13 299 1 2332 91 0 0 chrX 34885868 34886201 -127713729 + AluSq SINE Alu 1 333 0 780 218 128 13 chrX 34886341 34886575 -127713355 + L1ME3A LINE L1 5890 6150 -20 1928 131 44 13 chrX 34886873 34887171 -127712759 + AluJo SINE Alu 1 307 -5 2465 97 3 0 chrX 34887171 34887480 -127712450 + AluSx SINE Alu 1 310 -2 553 185 179 0 chrX 34887804 34887955 -127711975 - MER5A DNA MER1_type -8 181 4 1802 139 44 41 chrX 34888187 34888482 -127711448 - AluJo SINE Alu -14 298 3 1880 130 29 14 chrX 34888849 34888983 -127710947 + AluSx SINE Alu 3 134 -172 2341 115 0 6 chrX 34888983 34889296 -127710634 + AluSx SINE Alu 1 311 -1 1880 130 29 14 chrX 34889296 34889461 -127710469 + AluSx SINE Alu 134 306 0 1850 152 8 35 chrX 34889598 34889974 -127709956 - pTR5 LTR ERV1 -1331 1107 742 341 271 135 23 chrX 34889986 34890119 -127709811 - MLT1J LTR MaLR -331 180 33 1458 182 111 14 chrX 34890207 34890576 -127709354 + L1M4 LINE L1 681 1085 -5457 374 119 92 73 chrX 34890580 34890656 -127709274 + L1MB8 LINE L1 6068 6148 -30 2201 118 3 0 chrX 34890656 34890960 -127708970 - AluSx SINE Alu -7 305 1 374 119 92 73 chrX 34890960 34890992 -127708938 + L1MB8 LINE L1 6148 6178 0 2497 76 3 9 chrX 34891007 34891322 -127708608 + AluSq SINE Alu 1 313 0 626 150 0 10 chrX 34891334 34891434 -127708496 + AluJb SINE Alu 37 135 -177 2081 135 3 0 chrX 34891434 34891722 -127708208 + AluSx SINE Alu 1 289 -23 327 245 21 32 chrX 34891734 34891828 -127708102 + L1ME1 LINE L1 5876 5968 -198 582 215 0 0 chrX 34891828 34891935 -127707995 + FLAM_C SINE Alu 2 108 -35 21 36 0 0 chrX 34891964 34891992 -127707938 + AT_rich Low_complexity Low_complexity 1 28 0 399 21 0 0 chrX 34892322 34892370 -127707560 + (CA)n Simple_repeat Simple_repeat 2 49 0 2269 110 0 0 chrX 34893184 34893476 -127706454 + AluSx SINE Alu 1 292 -20 1190 115 13 0 chrX 34893525 34893681 -127706249 + AluSg/x SINE Alu 139 296 -14 2471 90 3 0 chrX 34893684 34893995 -127705935 + AluSp SINE Alu 1 312 -1 1968 144 11 3 chrX 34893998 34894345 -127705585 - L1MB3 LINE L1 -16 6167 5818 1342 118 11 0 chrX 34894381 34894559 -127705371 + AluJb SINE Alu 121 300 -12 375 128 139 35 chrX 34894560 34894646 -127705284 - L1MB3 LINE L1 -356 5824 5730 2154 128 20 0 chrX 34894659 34894956 -127704974 - AluSx SINE Alu -8 304 2 377 317 60 27 chrX 34895788 34895971 -127703959 + L1M4 LINE L1 3318 3506 -2640 264 273 0 0 chrX 34895996 34896051 -127703879 + polypurine Low_complexity Low_complexity 3 57 0 236 322 35 49 chrX 34896055 34896149 -127703781 + L1M4 LINE L1 3520 3613 -2533 2242 97 33 3 chrX 34896149 34896449 -127703481 + AluSg SINE Alu 1 309 -1 236 322 35 49 chrX 34896449 34896497 -127703433 + L1M4 LINE L1 3613 3660 -2486 706 67 0 0 chrX 34896501 34896591 -127703339 + 5S rRNA rRNA 1 90 -31 522 293 26 4 chrX 34896591 34896820 -127703110 + L1M4 LINE L1 3652 3885 -2261 256 208 21 0 chrX 34896846 34896894 -127703036 + MIR SINE MIR 45 93 -115 264 280 56 56 chrX 34896913 34897038 -127702892 + MIR3 SINE MIR 47 171 -37 966 204 47 50 chrX 34897263 34897314 -127702616 + L1MC5 LINE L1 7256 7306 -655 1846 66 70 4 chrX 34897314 34897556 -127702374 + AluY SINE Alu 37 294 -17 966 204 47 50 chrX 34897556 34897580 -127702350 + L1MC5 LINE L1 7306 7329 -632 1075 149 4 115 chrX 34897580 34897650 -127702280 - MER3 DNA MER1_type 0 209 133 1990 105 16 56 chrX 34897650 34897798 -127702132 + AluSx SINE Alu 1 132 -180 2366 91 0 7 chrX 34897798 34898096 -127701834 + AluSp SINE Alu 1 296 -17 1990 105 16 56 chrX 34898096 34898251 -127701679 + AluSx SINE Alu 132 292 -20 1075 149 4 115 chrX 34898251 34898415 -127701515 - MER3 DNA MER1_type -76 133 1 966 204 47 50 chrX 34898415 34898681 -127701249 + L1MC5 LINE L1 7329 7597 -364 1172 96 0 0 chrX 34898685 34898831 -127701099 + AluSx SINE Alu 1 146 -167 3825 63 32 104 chrX 34898831 34898987 -127700943 - LTR66 LTR ERVL 0 610 444 459 0 0 0 chrX 34898987 34899038 -127700892 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3825 63 32 104 chrX 34899038 34899364 -127700566 - LTR66 LTR ERVL -166 444 184 2303 78 34 0 chrX 34899364 34899657 -127700273 - AluSc SINE Alu -3 306 4 3825 63 32 104 chrX 34899657 34899824 -127700106 - LTR66 LTR ERVL -426 184 7 2208 112 3 3 chrX 34899826 34900121 -127699809 + AluSq SINE Alu 3 297 -16 1233 124 0 6 chrX 34900145 34900314 -127699616 + AluSx SINE Alu 140 307 -3 808 215 50 44 chrX 34900321 34900547 -127699383 + L1MC5 LINE L1 7603 7833 -128 1918 141 33 3 chrX 34900547 34900846 -127699084 - AluJo SINE Alu -4 308 1 808 215 50 44 chrX 34900846 34900940 -127698990 + L1MC5 LINE L1 7833 7925 -36 1950 136 0 60 chrX 34900948 34901264 -127698666 + AluJb SINE Alu 1 297 -15 2290 111 0 3 chrX 34901454 34901761 -127698169 + AluSx SINE Alu 1 306 -6 197 293 93 13 chrX 34901817 34901892 -127698038 + L3 LINE CR1 1092 1172 -405 971 261 54 23 chrX 34902111 34902502 -127697428 + LTR16A1 LTR ERVL 55 457 0 2184 87 26 29 chrX 34902857 34903167 -127696763 - AluSc SINE Alu 0 309 1 2351 75 7 10 chrX 34903172 34903467 -127696463 - AluSq SINE Alu -19 294 1 2245 96 0 0 chrX 34903475 34903757 -127696173 + AluSx SINE Alu 14 295 -17 2136 142 0 0 chrX 34904158 34904467 -127695463 + AluSx SINE Alu 1 309 -3 1286 214 87 77 chrX 34904492 34904893 -127695037 + MLT2D LTR ERVL 2 406 -8 2304 105 3 0 chrX 34905632 34905927 -127694003 - AluSx SINE Alu -16 296 1 309 273 107 101 chrX 34906784 34907092 -127692838 - L3 LINE CR1 -334 1243 934 233 305 166 44 chrX 34907090 34907451 -127692479 + L2 LINE L2 2269 2673 -641 * 269 83 0 0 chrX 34908195 34908231 -127691699 + Alu SINE Alu 2 37 -264 1137 133 0 0 chrX 34908231 34908397 -127691533 + AluSg/x SINE Alu 146 311 -1 834 214 97 137 chrX 34908652 34908736 -127691194 - L1ME4a LINE L1 -1 6120 6034 1953 154 3 3 chrX 34908736 34909034 -127690896 + AluSx SINE Alu 1 298 -14 834 214 97 137 chrX 34909034 34909370 -127690560 - L1ME4a LINE L1 -87 6034 5686 663 176 0 25 chrX 34909370 34909489 -127690441 - FLAM_A SINE Alu -17 116 1 834 214 97 137 chrX 34909489 34909570 -127690360 - L1ME4a LINE L1 -435 5686 5603 2363 98 7 3 chrX 34909570 34909867 -127690063 - AluSc SINE Alu -11 298 1 834 214 97 137 chrX 34909867 34910035 -127689895 - L1ME4a LINE L1 -518 5603 5476 2473 73 13 0 chrX 34910160 34910460 -127689470 + AluSp SINE Alu 1 304 -9 1141 87 0 0 chrX 34910863 34911001 -127688929 - AluSq/x SINE Alu -175 138 1 2426 75 3 0 chrX 34911699 34911993 -127687937 - AluSp SINE Alu -5 308 14 2500 74 0 3 chrX 34912109 34912421 -127687509 + AluY SINE Alu 1 311 0 2084 114 0 71 chrX 34912437 34912762 -127687168 - AluSx SINE Alu -10 302 1 2374 87 0 7 chrX 34913121 34913420 -127686510 + AluSx SINE Alu 1 297 -15 611 252 174 62 chrX 34913761 34914126 -127685804 + MLT1H1 LTR MaLR 70 493 -62 2320 107 0 3 chrX 34914126 34914435 -127685495 + AluSg SINE Alu 1 308 -2 611 252 174 62 chrX 34914435 34914505 -127685425 + MLT1H1 LTR MaLR 493 554 -1 1852 156 29 16 chrX 34914633 34914940 -127684990 + AluJb SINE Alu 2 312 0 2155 89 64 0 chrX 34915247 34915529 -127684401 - AluSx SINE Alu -12 300 1 669 213 0 0 chrX 34915884 34916006 -127683924 + FLAM_A SINE Alu 1 122 -11 2020 107 29 58 chrX 34916020 34916328 -127683602 + AluSq SINE Alu 3 301 -12 184 171 73 0 chrX 34916443 34916484 -127683446 + L2 LINE L2 3229 3272 0 2032 119 9 25 chrX 34916683 34917001 -127682929 + AluSq SINE Alu 1 313 0 2113 102 0 74 chrX 34917560 34917710 -127682220 + AluSx SINE Alu 1 116 -196 2365 107 0 0 chrX 34917710 34918019 -127681911 + AluSg SINE Alu 1 309 -1 2113 102 0 74 chrX 34918019 34918193 -127681737 + AluSx SINE Alu 116 301 -11 1139 127 6 0 chrX 34918330 34918496 -127681434 + FRAM SINE Alu 4 170 -6 778 70 0 0 chrX 34918581 34918681 -127681249 + HY3 scRNA scRNA 1 100 -1 267 173 0 0 chrX 34918681 34918733 -127681197 + A-rich Low_complexity Low_complexity 1 52 0 2559 64 3 0 chrX 34918982 34919279 -127680651 + AluSp SINE Alu 1 298 -15 2421 94 0 0 chrX 34919302 34919599 -127680331 + AluSx SINE Alu 1 297 -15 3136 194 36 57 chrX 34919702 34920341 -127679589 - L1MD2 LINE L1 -115 6244 5593 585 165 0 0 chrX 34920341 34920432 -127679498 + AluJb SINE Alu 13 103 -209 240 86 0 0 chrX 34920434 34920469 -127679461 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 1654 127 141 14 chrX 34920469 34920745 -127679185 + AluSx SINE Alu 2 312 0 3136 194 36 57 chrX 34920745 34921028 -127678902 - L1MD2 LINE L1 -765 5594 5301 1376 106 0 0 chrX 34921037 34921217 -127678713 - AluSp SINE Alu -4 309 130 680 156 57 0 chrX 34921217 34921357 -127678573 - L1MD2 LINE L1 -856 5290 5148 1859 154 6 35 chrX 34921396 34921715 -127678215 + AluJo SINE Alu 1 310 -2 444 271 62 23 chrX 34921784 34921913 -127678017 - L2 LINE L2 0 3313 3180 2288 102 3 0 chrX 34921913 34922206 -127677724 - AluSx SINE Alu -18 294 1 1219 143 9 29 chrX 34922969 34923179 -127676751 - AluSg/x SINE Alu -2 310 105 2428 88 0 0 chrX 34923208 34923505 -127676425 - AluSq SINE Alu -16 297 1 2083 104 18 0 chrX 34923906 34924184 -127675746 + AluSx SINE Alu 18 300 -12 2375 94 0 10 chrX 34925858 34926157 -127673773 - AluSx SINE Alu -10 302 7 872 140 52 0 chrX 34926290 34926426 -127673504 - FLAM_C SINE Alu 0 143 1 273 254 0 0 chrX 34926433 34926488 -127673442 - MIR SINE MIR -124 138 84 2366 105 0 16 chrX 34927059 34927374 -127672556 - AluSx SINE Alu -2 310 1 586 186 68 0 chrX 34927509 34927627 -127672303 + Charlie8 DNA MER1_type 87 212 -2205 2043 144 0 16 chrX 34927863 34928169 -127671761 + AluJo SINE Alu 1 301 -11 2255 103 7 7 chrX 34928254 34928555 -127671375 + AluSg SINE Alu 1 301 -9 332 136 0 0 chrX 34928640 34928694 -127671236 - MLT2D LTR ERVL 0 515 400 339 96 0 0 chrX 34928707 34928759 -127671171 + (GA)n Simple_repeat Simple_repeat 1 52 0 1978 137 27 48 chrX 34928761 34929044 -127670886 - MLT2D LTR ERVL -48 366 91 2488 82 3 0 chrX 34929044 34929348 -127670582 + AluSx SINE Alu 1 305 -7 1978 137 27 48 chrX 34929348 34929436 -127670494 - MLT2D LTR ERVL -323 91 3 2301 97 0 13 chrX 34929827 34930136 -127669794 - AluSq SINE Alu -7 306 2 240 56 0 0 chrX 34930138 34930174 -127669756 - AluJo SINE Alu -3 299 264 1294 145 16 0 chrX 34930174 34930360 -127669570 - AluJo SINE Alu -123 189 1 957 162 51 41 chrX 34930379 34930576 -127669354 - AluJo SINE Alu 0 312 114 887 168 24 24 chrX 34930616 34930783 -127669147 + FRAM SINE Alu 1 167 -9 2574 63 0 0 chrX 34930821 34931124 -127668806 + AluY SINE Alu 3 305 -6 2389 73 7 7 chrX 34931626 34931928 -127668002 + AluSp SINE Alu 1 302 -11 1128 101 7 0 chrX 34932546 34932695 -127667235 - AluSg/x SINE Alu -22 288 139 475 139 0 13 chrX 34932697 34932776 -127667154 - AluJ/FLAM SINE Alu -233 79 2 281 271 68 73 chrX 34932783 34932960 -127666970 - MIR SINE MIR -51 211 36 1119 49 7 7 chrX 34933150 34933293 -127666637 - AluY SINE Alu -168 143 1 2011 201 165 14 chrX 34933892 34934540 -127665390 + MER20B DNA MER1_type 27 772 -11 269 231 0 0 chrX 34934555 34934607 -127665323 - MIR SINE MIR -118 144 93 23 33 0 0 chrX 34935287 34935317 -127664613 + GC_rich Low_complexity Low_complexity 1 30 0 266 186 29 29 chrX 34935464 34935566 -127664364 + C-rich Low_complexity Low_complexity 1 102 0 201 162 0 0 chrX 34935794 34935831 -127664099 + A-rich Low_complexity Low_complexity 1 37 0 201 162 0 0 chrX 34937245 34937282 -127662648 + A-rich Low_complexity Low_complexity 1 37 0 1461 126 138 27 chrX 34940035 34940296 -127659634 + AluSg1 SINE Alu 14 303 -6 1018 88 7 0 chrX 34941176 34941312 -127658618 - AluSp/q SINE Alu -10 303 167 35 0 0 0 chrX 34942533 34942568 -127657362 + AT_rich Low_complexity Low_complexity 1 35 0 2334 90 17 0 chrX 34943442 34943742 -127656188 - AluSx SINE Alu -7 305 1 2243 91 3 10 chrX 34944520 34944818 -127655112 - AluSp SINE Alu -17 296 1 591 298 49 10 chrX 34946913 34947118 -127652812 - MER58A DNA MER1_type -10 214 2 2361 91 7 0 chrX 34947963 34948272 -127651658 - AluSp SINE Alu -2 311 1 2113 140 0 13 chrX 34949401 34949716 -127650214 - 7SLRNA srpRNA srpRNA -9 311 1 577 158 241 23 chrX 34949760 34949893 -127650037 + FAM SINE Alu 1 162 -13 246 313 0 0 chrX 34951194 34951277 -127648653 + (CAG)n Simple_repeat Simple_repeat 2 84 0 530 162 9 48 chrX 34954502 34954607 -127645323 + FLAM_A SINE Alu 21 121 -21 639 156 156 19 chrX 34955825 34955985 -127643945 + L1M4 LINE L1 5624 5805 -373 2171 83 7 50 chrX 34957010 34957310 -127642620 + AluY SINE Alu 1 287 -24 1769 134 73 11 chrX 34957344 34957619 -127642311 + AluSg SINE Alu 1 292 -18 255 61 0 0 chrX 34957632 34957665 -127642265 + (CA)n Simple_repeat Simple_repeat 2 34 0 4283 171 80 62 chrX 34957915 34958181 -127641749 - L1MD2 LINE L1 -34 6325 6065 1659 144 86 11 chrX 34958181 34958459 -127641471 - AluJb SINE Alu -13 299 1 4283 171 80 62 chrX 34958459 34958658 -127641272 - L1MD2 LINE L1 -294 6065 5871 2154 85 44 0 chrX 34958658 34958956 -127640974 - AluSx SINE Alu 0 310 1 4283 171 80 62 chrX 34958956 34959315 -127640615 - L1MD2 LINE L1 -488 5871 5520 1737 152 0 53 chrX 34959315 34959618 -127640312 - AluJb SINE Alu -24 288 2 4283 171 80 62 chrX 34959618 34959970 -127639960 - L1MD2 LINE L1 -839 5520 5133 2258 107 0 23 chrX 34959972 34960281 -127639649 - AluSx SINE Alu -10 302 1 2107 103 48 0 chrX 34960285 34960461 -127639469 - AluSc SINE Alu -3 306 109 180 0 0 0 chrX 34960461 34960481 -127639449 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2107 103 48 0 chrX 34960481 34960596 -127639334 - AluSc SINE Alu -200 109 1 1358 236 5 43 chrX 34960597 34960760 -127639170 - L1MD2 LINE L1 -1229 4917 4749 2339 108 3 0 chrX 34960760 34961066 -127638864 - AluSx SINE Alu -5 307 1 1358 236 5 43 chrX 34961066 34961300 -127638630 - L1MD2 LINE L1 -1397 4749 4535 1436 130 0 28 chrX 34961353 34961568 -127638362 - AluJo SINE Alu -103 209 1 2442 77 10 3 chrX 34961898 34962209 -127637721 - AluSp SINE Alu 0 313 1 2241 106 13 0 chrX 34962587 34962888 -127637042 - AluSq SINE Alu -8 305 1 2137 108 35 0 chrX 34963157 34963443 -127636487 + AluSx SINE Alu 1 296 -16 2157 40 44 74 chrX 34963524 34963820 -127636110 + AluY SINE Alu 1 287 -24 201 39 0 0 chrX 34963830 34963856 -127636074 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2125 92 0 0 chrX 34963928 34964189 -127635741 + AluSx SINE Alu 1 261 -51 374 131 34 91 chrX 34964291 34964467 -127635463 + T-rich Low_complexity Low_complexity 4 169 0 1523 121 8 24 chrX 34964546 34964795 -127635135 + AluY SINE Alu 59 303 -8 1206 113 0 0 chrX 34964795 34964954 -127634976 + AluSg/x SINE Alu 134 292 -20 38 0 0 0 chrX 34964954 34964992 -127634938 + AT_rich Low_complexity Low_complexity 1 38 0 2211 86 31 3 chrX 34965456 34965746 -127634184 - AluSp SINE Alu -15 298 1 266 248 128 28 chrX 34965807 34965916 -127634014 - MIR SINE MIR -48 214 95 211 71 48 0 chrX 34965940 34965982 -127633948 + (TA)n Simple_repeat Simple_repeat 2 45 0 2217 99 25 0 chrX 34966342 34966626 -127633304 - AluSx SINE Alu -21 291 1 2126 106 0 70 chrX 34966985 34967316 -127632614 + AluSq SINE Alu 1 308 -5 990 95 0 0 chrX 34967642 34967768 -127632162 - AluSg1 SINE Alu -183 126 1 1818 164 3 13 chrX 34967802 34968100 -127631830 - AluJb SINE Alu -16 296 2 2119 130 13 0 chrX 34968108 34968407 -127631523 - AluSq SINE Alu -10 303 1 1685 275 131 15 chrX 34968537 34969072 -127630858 + MER115 DNA AcHobo 97 693 0 465 203 43 51 chrX 34969273 34969411 -127630519 - MIR3 SINE MIR -45 163 27 1249 138 0 0 chrX 34970567 34970734 -127629196 - AluSq SINE Alu -146 167 1 882 196 0 0 chrX 34970891 34971034 -127628896 - AluJb SINE Alu -33 279 137 2299 106 0 3 chrX 34971222 34971524 -127628406 + AluSc SINE Alu 1 301 -8 337 126 5 0 chrX 34971718 34971782 -127628148 - Alu SINE Alu -256 44 1 359 276 110 76 chrX 34971883 34972075 -127627855 + L2 LINE L2 2379 2584 -730 2479 88 0 0 chrX 34972075 34972380 -127627550 - AluSq SINE Alu -8 305 1 359 276 110 76 chrX 34972380 34972451 -127627479 + L2 LINE L2 2584 2651 -663 348 243 112 0 chrX 34972545 34972652 -127627278 + L2 LINE L2 2949 3067 -246 2177 126 3 0 chrX 34973135 34973429 -127626501 + AluSx SINE Alu 1 295 -17 2508 74 3 0 chrX 34973493 34973803 -127626127 + AluSp SINE Alu 1 311 -2 278 200 111 33 chrX 34974025 34974115 -127625815 + MLT1L LTR MaLR 30 126 -489 592 90 0 0 chrX 34974531 34974609 -127625321 + AluJ/FLAM SINE Alu 2 79 -233 465 234 95 0 chrX 34974613 34974750 -127625180 + L1MC5 LINE L1 7741 7890 -71 2282 100 0 19 chrX 34974810 34975120 -127624810 - AluSx SINE Alu -8 304 1 2039 147 0 0 chrX 34975120 34975427 -127624503 - AluJo SINE Alu -5 307 1 360 302 45 45 chrX 34975703 34975945 -127623985 + L2 LINE L2 2508 2749 -565 2322 95 3 0 chrX 34975990 34976285 -127623645 - AluSx SINE Alu -16 296 1 1804 141 0 49 chrX 34976293 34976598 -127623332 - AluJo SINE Alu -22 290 1 225 224 26 129 chrX 34976635 34976701 -127623229 - L1ME3A LINE L1 -97 6073 6022 2258 116 0 0 chrX 34976701 34977002 -127622928 + AluSx SINE Alu 1 301 -11 225 224 26 129 chrX 34977002 34977051 -127622879 - L1ME3A LINE L1 -148 6022 5970 402 193 62 90 chrX 34977115 34977156 -127622774 - L1M3 LINE L1 -343 5819 5778 2277 88 0 0 chrX 34977156 34977467 -127622463 - AluSx SINE Alu 0 311 1 402 193 62 90 chrX 34977467 34977569 -127622361 - L1M3 LINE L1 -384 5778 5684 305 185 62 25 chrX 34977562 34977643 -127622287 - L1MC5 LINE L1 -45 7916 7833 * 207 376 6 30 chrX 34977668 34977833 -127622097 - MER5B DNA MER1_type -17 161 1 2098 90 0 63 chrX 34977920 34978264 -127621666 - AluSx SINE Alu 0 325 1 706 169 22 37 chrX 34978266 34978402 -127621528 - FLAM_C SINE Alu -8 135 2 218 245 112 20 chrX 34978419 34978517 -127621413 + L2 LINE L2 2847 2953 -319 2421 103 0 0 chrX 34978519 34978830 -127621100 - AluSx SINE Alu -1 311 1 3303 203 75 39 chrX 34978962 34979508 -127620422 - L1ME1 LINE L1 0 6560 6035 2325 106 0 0 chrX 34979508 34979810 -127620120 - AluSx SINE Alu -10 302 1 3303 203 75 39 chrX 34979810 34980200 -127619730 - L1ME1 LINE L1 -525 6035 5661 572 147 0 0 chrX 34980200 34980295 -127619635 - AluJo/FRAM SINE Alu -9 303 209 1856 150 10 7 chrX 34980202 34980502 -127619428 - AluJo SINE Alu -11 301 1 3303 203 75 39 chrX 34980502 34980606 -127619324 - L1ME1 LINE L1 -1106 5454 5480 2045 149 7 0 chrX 34980606 34980907 -127619023 - AluJb SINE Alu -9 303 1 1075 221 59 18 chrX 34980911 34981250 -127618680 - L1ME1 LINE L1 -2640 3900 3548 2412 99 3 6 chrX 34981255 34981569 -127618361 - AluSq SINE Alu 0 313 1 1314 116 0 0 chrX 34981578 34981800 -127618130 + AluSg/x SINE Alu 118 310 0 2408 235 34 24 chrX 34981800 34982053 -127617877 + L1M4 LINE L1 2354 2603 -3543 2330 92 0 16 chrX 34982053 34982359 -127617571 + AluSg SINE Alu 1 301 -9 2408 235 34 24 chrX 34982359 34982777 -127617153 + L1M4 LINE L1 2603 3035 -3111 2362 88 0 19 chrX 34982777 34983094 -127616836 + AluSq SINE Alu 2 312 -1 1010 217 26 15 chrX 34983094 34983361 -127616569 - L1ME1 LINE L1 -4425 2115 1846 2153 115 0 14 chrX 34983383 34983698 -127616232 + AluSx SINE Alu 1 311 0 247 269 0 64 chrX 34983699 34983777 -127616153 - L2 LINE L2 -18 3295 3223 1984 162 0 10 chrX 34983918 34984246 -127615684 - AluJo SINE Alu 0 312 1 1756 174 31 62 chrX 34984277 34984661 -127615269 + MLT1A2 LTR MaLR 3 374 0 2416 88 0 0 chrX 34985249 34985546 -127614384 - AluSx SINE Alu -15 297 1 973 120 0 0 chrX 34985815 34985948 -127613982 - AluJb SINE Alu -179 133 1 2444 115 0 0 chrX 34985956 34986268 -127613662 - AluSx SINE Alu 0 312 1 2427 85 0 0 chrX 34986868 34987161 -127612769 - AluSg SINE Alu -17 293 1 2471 88 0 0 chrX 34987344 34987640 -127612290 + AluSg SINE Alu 1 296 -14 184 293 65 49 chrX 34988133 34988256 -127611674 + L3b LINE CR1 1318 1442 -141 2216 131 0 6 chrX 34988257 34988571 -127611359 - AluSx SINE Alu 0 312 1 1314 220 75 13 chrX 34988680 34989053 -127610877 + L1ME3A LINE L1 5587 5982 -188 192 97 0 0 chrX 34989066 34989097 -127610833 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2145 117 0 4 chrX 34989100 34989381 -127610549 - AluSg SINE Alu -30 280 1 487 256 31 25 chrX 34989490 34989650 -127610280 - L1ME3 LINE L1 -4 6158 6000 2072 109 11 18 chrX 34989938 34990116 -127609814 - AluSx SINE Alu 0 314 137 2465 70 3 0 chrX 34990116 34990414 -127609516 - AluY SINE Alu -12 299 1 2072 109 11 18 chrX 34990414 34990551 -127609379 - AluSx SINE Alu -177 137 1 2425 91 3 0 chrX 34991021 34991330 -127608600 - AluSp SINE Alu -3 310 1 2261 86 10 3 chrX 34991331 34991621 -127608309 - AluSg SINE Alu -18 292 1 2604 37 3 0 chrX 34992087 34992387 -127607543 + AluY SINE Alu 1 301 -10 2270 99 10 0 chrX 34992390 34992692 -127607238 + AluSq SINE Alu 1 305 -8 222 62 0 0 chrX 34993391 34993423 -127606507 + (A)n Simple_repeat Simple_repeat 1 32 0 2340 72 0 17 chrX 34993837 34994128 -127605802 - AluSx SINE Alu -19 293 8 243 0 0 0 chrX 34994130 34994157 -127605773 + (T)n Simple_repeat Simple_repeat 1 27 0 384 196 78 10 chrX 34994520 34994622 -127605308 + L1MB8 LINE L1 5468 5576 -602 1159 22 0 29 chrX 34994623 34994760 -127605170 + SVA Other Other 1254 1386 0 506 137 12 2 chrX 34994760 34994856 -127605074 + L1MB8 LINE L1 5574 5669 -514 1852 122 10 59 chrX 34994861 34995165 -127604765 + AluSx SINE Alu 12 300 -12 1322 159 92 131 chrX 34995168 34995318 -127604612 - MER4C LTR ERV1 -17 448 294 1883 144 0 11 chrX 34995318 34995453 -127604477 + AluJb SINE Alu 1 136 -196 2292 101 7 0 chrX 34995453 34995751 -127604179 + AluSg SINE Alu 1 300 -10 1883 144 0 11 chrX 34995751 34995950 -127603980 + AluJb SINE Alu 136 332 0 2073 136 0 13 chrX 34995958 34996285 -127603645 + AluSx SINE Alu 1 323 0 1322 159 92 131 chrX 34996285 34996587 -127603343 - MER4C LTR ERV1 -178 287 2 617 147 54 0 chrX 34996588 34996717 -127603213 + L1MB8 LINE L1 5638 5773 -405 878 127 6 53 chrX 34996725 34996901 -127603029 + LTR23 LTR ERV1 59 242 -195 1950 109 0 91 chrX 34996901 34997230 -127602700 + AluSx SINE Alu 1 299 -13 878 127 6 53 chrX 34997230 34997372 -127602558 + LTR23 LTR ERV1 242 437 0 818 179 21 26 chrX 34997372 34997562 -127602368 + L1MB8 LINE L1 5749 5937 -241 1244 120 0 11 chrX 34997562 34997745 -127602185 + AluSg/x SINE Alu 132 312 0 185 399 44 6 chrX 34997816 34997974 -127601956 - L2 LINE L2 -608 2706 2543 2466 183 83 26 chrX 34998016 34998289 -127601641 - LTR39 LTR ERV1 -2 781 525 2493 80 0 3 chrX 34998289 34998602 -127601328 - AluSx SINE Alu 0 312 1 2466 183 83 26 chrX 34998602 34998868 -127601062 - LTR39 LTR ERV1 -258 525 211 929 184 0 0 chrX 34998895 34999058 -127600872 - AluJb SINE Alu -2 310 148 289 333 20 0 chrX 34999060 34999162 -127600768 + MIR SINE MIR 105 208 -54 4201 62 5 58 chrX 35000079 35000224 -127599706 + MER41A LTR ERV1 1 152 -402 2284 110 0 3 chrX 35000224 35000534 -127599396 + AluSc SINE Alu 1 309 0 4201 62 5 58 chrX 35000534 35000898 -127599032 + MER41A LTR ERV1 152 478 -76 2462 77 7 0 chrX 35000898 35001195 -127598735 - AluSg SINE Alu -10 300 2 4201 62 5 58 chrX 35001195 35001269 -127598661 + MER41A LTR ERV1 478 554 0 333 68 0 0 chrX 35002328 35002372 -127597558 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2165 86 45 3 chrX 35002447 35002738 -127597192 + AluSx SINE Alu 1 303 -9 1336 99 0 76 chrX 35002762 35002973 -127596957 + AluJo SINE Alu 116 310 -2 1472 116 0 5 chrX 35003191 35003389 -127596541 - AluSx SINE Alu -115 197 1 1039 162 0 20 chrX 35003390 35003588 -127596342 + L1MB3 LINE L1 5819 6012 -171 1172 140 0 11 chrX 35003591 35003637 -127596293 - AluSp SINE Alu -134 179 134 2438 78 0 3 chrX 35003637 35003933 -127595997 - AluSx SINE Alu -17 295 1 1172 140 0 11 chrX 35003933 35004065 -127595865 - AluSp SINE Alu -179 134 3 900 211 30 17 chrX 35004065 35004297 -127595633 + LTR16C LTR ERVL 257 491 0 1895 160 7 10 chrX 35004667 35004955 -127594975 - AluSx SINE Alu -25 287 1 1399 147 9 5 chrX 35004965 35005183 -127594747 - AluJb SINE Alu -9 303 85 2298 104 0 0 chrX 35005198 35005497 -127594433 - AluSx SINE Alu -13 299 1 207 0 0 0 chrX 35005549 35005572 -127594358 + (CAA)n Simple_repeat Simple_repeat 2 24 0 234 172 0 65 chrX 35005812 35005891 -127594039 + CT-rich Low_complexity Low_complexity 3 77 -12 1930 172 0 0 chrX 35005891 35006182 -127593748 - AluJb SINE Alu -21 291 1 234 172 0 65 chrX 35006182 35006195 -127593735 + CT-rich Low_complexity Low_complexity 77 89 0 2254 112 10 0 chrX 35006213 35006518 -127593412 + AluSx SINE Alu 1 308 -4 2264 94 0 3 chrX 35006906 35007214 -127592716 - AluSx SINE Alu 0 308 2 350 224 37 161 chrX 35007224 35007354 -127592576 - L1MC/D LINE L1 -2211 5597 5453 2605 201 51 34 chrX 35007354 35007548 -127592382 - MLT1E3 LTR MaLR -3 621 432 1876 153 32 23 chrX 35007548 35007580 -127592350 - AluSx SINE Alu -1 311 281 297 0 0 0 chrX 35007580 35007613 -127592317 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1876 153 32 23 chrX 35007613 35007888 -127592042 - AluSx SINE Alu -31 281 1 2605 201 51 34 chrX 35007888 35008304 -127591626 - MLT1E3 LTR MaLR -192 432 1 350 224 37 161 chrX 35008304 35008358 -127591572 - L1MC/D LINE L1 -2355 5453 5394 2291 112 0 3 chrX 35008358 35008663 -127591267 - AluSq SINE Alu -9 304 1 350 224 37 161 chrX 35008663 35008783 -127591147 - L1MC/D LINE L1 -2414 5394 5337 1717 146 73 0 chrX 35008783 35009058 -127590872 - AluJo SINE Alu -14 298 4 350 224 37 161 chrX 35009058 35009099 -127590831 - L1MC/D LINE L1 -2471 5337 5293 2244 100 0 0 chrX 35009132 35009413 -127590517 + AluSq SINE Alu 1 281 -32 207 0 0 0 chrX 35009414 35009437 -127590493 + (TC)n Simple_repeat Simple_repeat 1 23 0 1193 115 23 17 chrX 35009449 35009623 -127590307 + AluSg/x SINE Alu 127 301 -11 2234 115 17 0 chrX 35009790 35010086 -127589844 - AluSx SINE Alu -11 301 1 2177 95 28 0 chrX 35010114 35010397 -127589533 + AluSx SINE Alu 1 291 -21 211 71 48 0 chrX 35010757 35010799 -127589131 + (TA)n Simple_repeat Simple_repeat 2 45 0 316 233 150 38 chrX 35010799 35010932 -127588998 + MIR SINE MIR 67 214 -48 2223 89 31 3 chrX 35010993 35011285 -127588645 + AluSp SINE Alu 1 300 -13 38 0 0 0 chrX 35011749 35011787 -127588143 + AT_rich Low_complexity Low_complexity 1 38 0 2142 99 0 40 chrX 35011787 35011946 -127587984 - AluY SINE Alu -20 291 148 2588 51 0 19 chrX 35011946 35012257 -127587673 - AluY SINE Alu -6 305 1 2142 99 0 40 chrX 35012257 35012400 -127587530 - AluY SINE Alu -163 148 1 6887 78 15 5 chrX 35012402 35013549 -127586381 - L1PA10 LINE L1 -10 6158 5003 1973 117 36 4 chrX 35013621 35013932 -127585998 - AluSx SINE Alu 0 320 1 1681 151 0 82 chrX 35014167 35014325 -127585605 - AluJo SINE Alu -21 291 170 2201 124 0 3 chrX 35014325 35014623 -127585307 - AluSx SINE Alu -15 297 1 1681 151 0 82 chrX 35014623 35014781 -127585149 - AluJo SINE Alu -142 170 1 586 293 17 6 chrX 35016176 35016357 -127583573 - MIR SINE MIR -1 261 79 2402 79 16 7 chrX 35016589 35016894 -127583036 - AluSx SINE Alu -4 308 1 1893 126 66 140 chrX 35017180 35017222 -127582708 - MLT1D LTR MaLR 0 505 461 2406 82 3 3 chrX 35017222 35017525 -127582405 + AluSx SINE Alu 1 303 -9 1893 126 66 140 chrX 35017525 35017555 -127582375 - MLT1D LTR MaLR -44 461 430 852 181 0 0 chrX 35017555 35017688 -127582242 + FLAM_C SINE Alu 1 133 0 1893 126 66 140 chrX 35017688 35018114 -127581816 - MLT1D LTR MaLR -75 430 43 2510 260 54 19 chrX 35018858 35019451 -127580479 + Zaphod DNA AcHobo 1 629 -3402 327 25 0 0 chrX 35019451 35019491 -127580439 + (CA)n Simple_repeat Simple_repeat 2 41 0 2510 260 54 19 chrX 35019491 35019679 -127580251 + Zaphod DNA AcHobo 629 809 -3222 240 35 0 0 chrX 35019778 35019807 -127580123 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 1827 125 3 35 chrX 35019807 35020094 -127579836 - AluSq SINE Alu -35 278 1 422 213 0 0 chrX 35020315 35020395 -127579535 - L2 LINE L2 0 3313 3234 2188 86 0 40 chrX 35020691 35020857 -127579073 - LTR8 LTR ERV1 0 691 543 2447 65 3 0 chrX 35020857 35021149 -127578781 - AluSp SINE Alu -20 293 1 2188 86 0 40 chrX 35021149 35021308 -127578622 - LTR8 LTR ERV1 -148 543 379 1131 68 0 0 chrX 35021305 35021453 -127578477 - LTR8 LTR ERV1 -543 148 1 * 2170 114 37 0 chrX 35021496 35021616 -127578314 + AluSx SINE Alu 1 115 -197 188 0 74 0 chrX 35021616 35021643 -127578287 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2170 114 37 0 chrX 35021643 35021821 -127578109 + AluSx SINE Alu 115 310 -2 2166 114 0 0 chrX 35021856 35022137 -127577793 + AluSx SINE Alu 1 281 -31 1209 127 0 0 chrX 35021964 35022137 -127577793 + AluSg/x SINE Alu 109 304 0 208 0 0 0 chrX 35022137 35022160 -127577770 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 624 117 64 0 chrX 35022870 35022964 -127576966 - AluSg/x SINE Alu -9 301 202 1245 118 45 142 chrX 35022871 35023203 -127576727 - AluSx SINE Alu 0 302 3 2233 77 0 0 chrX 35023207 35023492 -127576438 - AluSp SINE Alu -11 302 18 550 141 190 74 chrX 35023515 35023683 -127576247 + Zaphod DNA AcHobo 551 758 -3273 1783 124 29 0 chrX 35023683 35023993 -127575937 + AluSx SINE Alu 2 319 0 550 141 190 74 chrX 35023993 35024065 -127575865 + Zaphod DNA AcHobo 758 820 -3211 930 151 60 60 chrX 35024065 35024218 -127575712 - L1MB3 LINE L1 -5 6178 6023 1677 171 56 9 chrX 35024218 35024540 -127575390 + MER1B DNA MER1_type 1 337 0 930 151 60 60 chrX 35024540 35024604 -127575326 - L1MB3 LINE L1 -159 6024 5961 2163 102 0 0 chrX 35024623 35024916 -127575014 - AluSg SINE Alu -13 297 5 2429 54 0 0 chrX 35024931 35025228 -127574702 - AluY SINE Alu -14 297 1 1670 165 7 3 chrX 35025252 35025543 -127574387 - AluJb SINE Alu -14 298 7 2202 116 0 0 chrX 35025624 35025934 -127573996 - AluSx SINE Alu -2 310 1 306 126 0 23 chrX 35025940 35026027 -127573903 + Zaphod DNA AcHobo 904 988 -3043 1161 174 143 78 chrX 35026028 35026347 -127573583 + Zaphod DNA AcHobo 3596 3893 -138 2126 108 0 13 chrX 35026347 35026653 -127573277 + AluSx SINE Alu 1 302 -10 2216 75 3 3 chrX 35026660 35026955 -127572975 + AluSq SINE Alu 5 299 -14 2142 46 7 11 chrX 35026956 35027261 -127572669 + AluY SINE Alu 1 304 0 1161 174 143 78 chrX 35027261 35027314 -127572616 + Zaphod DNA AcHobo 3897 4004 -27 746 144 81 23 chrX 35027324 35027498 -127572432 + MER53 DNA DNA 3 186 -3 339 302 78 62 chrX 35027605 35027806 -127572124 - L1ME3A LINE L1 -1 6169 5958 1908 101 61 4 chrX 35027806 35028083 -127571847 - AluSp SINE Alu -19 294 2 339 302 78 62 chrX 35028083 35028268 -127571662 - L1ME3A LINE L1 -212 5958 5777 900 167 0 0 chrX 35028271 35028415 -127571515 - FRAM SINE Alu -20 156 13 352 275 0 3 chrX 35028429 35028528 -127571402 - L1MB3 LINE L1 -384 5786 5689 2078 101 27 3 chrX 35028530 35028828 -127571102 - AluSx SINE Alu -7 305 1 323 284 11 33 chrX 35029831 35029858 -127570072 + L1P5 LINE L1 5254 5280 -876 2181 108 0 3 chrX 35029858 35030165 -127569765 - AluSx SINE Alu -5 307 2 323 284 11 33 chrX 35030165 35030320 -127569610 + L1P5 LINE L1 5280 5432 -724 2087 123 0 3 chrX 35030329 35030631 -127569299 + AluY SINE Alu 1 301 -10 338 169 0 0 chrX 35030636 35030695 -127569235 + L1ME3A LINE L1 5742 5800 -364 1158 238 83 17 chrX 35030766 35031128 -127568802 + L1ME3A LINE L1 5785 6170 0 2329 164 20 69 chrX 35031715 35032075 -127567855 + Charlie1b DNA MER1_type 1 377 -2384 1717 143 0 21 chrX 35032075 35032388 -127567542 - AluJo SINE Alu 0 308 2 2329 164 20 69 chrX 35032388 35032428 -127567502 + Charlie1b DNA MER1_type 377 417 -2344 2072 104 6 28 chrX 35032428 35032745 -127567185 - AluSx SINE Alu -2 310 1 2329 164 20 69 chrX 35032745 35032892 -127567038 + Charlie1b DNA MER1_type 417 523 0 801 222 27 69 chrX 35032912 35033064 -127566866 - L1MD3 LINE L1 -16 7979 7841 2242 94 0 0 chrX 35033064 35033361 -127566569 - AluSx SINE Alu -15 297 1 801 222 27 69 chrX 35033361 35033469 -127566461 - L1MD3 LINE L1 -154 7841 7730 1104 58 0 0 chrX 35033611 35033750 -127566180 + Tigger2 DNA MER2_type 2391 2529 -189 2342 70 0 0 chrX 35033760 35034059 -127565871 + AluY SINE Alu 1 299 -12 792 165 8 0 chrX 35034075 35034202 -127565728 + FLAM_C SINE Alu 6 133 -10 883 211 113 153 chrX 35034209 35034436 -127565494 + L1MC5 LINE L1 6906 7141 -820 2033 97 0 31 chrX 35034436 35034748 -127565182 - AluSg SINE Alu 0 306 4 1708 163 3 7 chrX 35034750 35035039 -127564891 - AluJo SINE Alu -23 289 2 2100 102 17 0 chrX 35035045 35035340 -127564590 - AluSx SINE Alu -12 300 1 883 211 113 153 chrX 35035340 35035457 -127564473 + L1MC5 LINE L1 7147 7267 -694 652 176 67 0 chrX 35035457 35035576 -127564354 - FLAM_A SINE Alu -6 127 1 883 211 113 153 chrX 35035576 35035711 -127564219 + L1MC5 LINE L1 7267 7406 -555 2345 80 3 0 chrX 35035711 35036013 -127563917 + AluSp SINE Alu 1 303 -10 883 211 113 153 chrX 35036013 35036089 -127563841 + L1MC5 LINE L1 7406 7483 -478 2233 92 6 13 chrX 35036089 35036404 -127563526 + AluSq SINE Alu 1 313 0 883 211 113 153 chrX 35036404 35036685 -127563245 + L1MC5 LINE L1 7483 7708 -253 10577 22 0 0 chrX 35036685 35038668 -127561262 - L1PA3 LINE L1 -3 6152 4170 883 211 113 153 chrX 35038668 35038870 -127561060 + L1MC5 LINE L1 7708 7917 -44 2154 80 4 0 chrX 35038894 35039168 -127560762 + AluSp SINE Alu 1 275 -38 1676 122 0 99 chrX 35040760 35040990 -127558940 - AluJo SINE Alu -1 311 125 2057 131 0 0 chrX 35040990 35041295 -127558635 + AluSx SINE Alu 1 305 -7 1676 122 0 99 chrX 35041295 35041409 -127558521 - AluJo SINE Alu -187 125 1 1587 104 49 139 chrX 35041617 35041822 -127558108 - Charlie1b DNA MER1_type -2239 522 300 1975 133 0 31 chrX 35041822 35042139 -127557791 - AluSx SINE Alu -5 307 1 1587 104 49 139 chrX 35042139 35042409 -127557521 - Charlie1b DNA MER1_type -2461 300 78 854 131 0 0 chrX 35042411 35042533 -127557397 + FLAM_C SINE Alu 1 122 -11 227 114 23 0 chrX 35042533 35042577 -127557353 + (TA)n Simple_repeat Simple_repeat 2 46 0 329 258 0 0 chrX 35042578 35042667 -127557263 + L1MC4 LINE L1 6615 6703 -1339 427 256 12 0 chrX 35042672 35042758 -127557172 - Charlie1b DNA MER1_type -435 88 2 737 249 136 89 chrX 35042793 35043287 -127556643 - MLT1L LTR MaLR -91 524 8 2248 91 7 0 chrX 35043478 35043775 -127556155 - AluSp SINE Alu -14 299 1 1845 124 18 3 chrX 35044136 35044419 -127555511 - AluSq SINE Alu -26 287 1 1915 132 0 13 chrX 35044632 35044957 -127554973 - AluJb SINE Alu 0 312 1 2123 92 0 3 chrX 35045073 35045390 -127554540 + AluSp SINE Alu 1 316 0 1855 88 19 8 chrX 35045461 35045722 -127554208 - L1PA8A LINE L1 -4 6127 5864 1069 177 60 4 chrX 35045741 35045983 -127553947 - LTR54B LTR ERV1 -1 497 242 253 154 0 0 chrX 35045983 35046022 -127553908 - MSTD LTR MaLR 0 457 419 984 180 267 16 chrX 35046022 35046105 -127553825 + MSTC LTR MaLR 1 62 -366 1957 138 0 3 chrX 35046105 35046401 -127553529 + AluSx SINE Alu 1 295 -17 984 180 267 16 chrX 35046401 35046628 -127553302 + MSTC LTR MaLR 62 389 -39 536 133 12 0 chrX 35046629 35046712 -127553218 + AluJ/FLAM SINE Alu 2 85 -227 * 757 115 0 0 chrX 35046704 35046853 -127553077 + AluSp/q SINE Alu 181 329 0 345 137 0 0 chrX 35046872 35046923 -127553007 + MSTC LTR MaLR 407 457 0 812 206 147 71 chrX 35046927 35047165 -127552765 - MSTD LTR MaLR -38 358 103 705 137 62 62 chrX 35047160 35047321 -127552609 - LTR54 LTR ERV1 -349 161 1 * 2101 126 7 0 chrX 35047996 35048306 -127551624 + AluSx SINE Alu 1 312 0 2125 136 0 0 chrX 35048336 35048645 -127551285 + AluSx SINE Alu 1 309 -3 1966 105 0 71 chrX 35048646 35048969 -127550961 - AluSx SINE Alu -12 300 1 696 346 90 17 chrX 35049062 35049530 -127550400 + L1M4 LINE L1 2121 2622 -3524 24 0 0 0 chrX 35049853 35049877 -127550053 + AT_rich Low_complexity Low_complexity 1 24 0 2101 96 20 10 chrX 35049884 35050177 -127549753 + AluSx SINE Alu 5 300 -12 685 203 0 14 chrX 35050177 35050309 -127549621 - L1MB3 LINE L1 -63 6120 5991 253 263 53 0 chrX 35050310 35050386 -127549544 + MLT1K LTR MaLR 509 588 0 343 54 87 0 chrX 35050399 35050491 -127549439 + (TA)n Simple_repeat Simple_repeat 2 101 0 324 281 100 96 chrX 35050495 35050960 -127548970 - L1MEd LINE L1 -4875 1244 802 1977 144 3 0 chrX 35051011 35051310 -127548620 + AluSq SINE Alu 4 303 -10 1798 166 0 13 chrX 35051318 35051632 -127548298 + AluJb SINE Alu 2 311 -1 914 103 0 0 chrX 35051666 35051792 -127548138 + AluSg1 SINE Alu 1 126 -183 391 155 0 28 chrX 35051815 35051886 -127548044 - Tigger2 DNA MER2_type -2649 69 1 535 201 39 71 chrX 35053044 35053198 -127546732 + MIR3 SINE MIR 15 163 -45 1705 277 131 15 chrX 35053399 35053934 -127545996 - MER115 DNA AcHobo 0 693 97 2162 85 0 0 chrX 35054064 35054388 -127545542 + AluSx SINE Alu 1 324 0 927 125 0 0 chrX 35054700 35054836 -127545094 + AluSq SINE Alu 87 222 -91 1970 141 0 10 chrX 35054972 35055276 -127544654 + AluSx SINE Alu 1 301 -11 383 221 111 87 chrX 35056271 35056340 -127543590 - MER5A DNA MER1_type 0 189 123 2237 65 37 7 chrX 35056340 35056634 -127543296 + AluSc SINE Alu 1 303 -6 383 221 111 87 chrX 35056634 35056736 -127543194 - MER5A DNA MER1_type -66 123 14 204 143 0 24 chrX 35057077 35057119 -127542811 + (CTGGGG)n Simple_repeat Simple_repeat 1 41 0 2418 51 0 0 chrX 35058228 35058524 -127541406 - AluY SINE Alu -6 305 10 2120 112 6 6 chrX 35058539 35058851 -127541079 - AluSx SINE Alu 0 312 1 1974 117 20 0 chrX 35060259 35060558 -127539372 - AluSx SINE Alu -3 309 5 233 155 155 0 chrX 35060582 35060640 -127539290 + L1ME1 LINE L1 5406 5472 -702 1149 121 0 0 chrX 35060640 35060805 -127539125 - AluSg/x SINE Alu -15 297 133 1224 149 103 70 chrX 35060822 35061124 -127538806 - AluSx SINE Alu 0 312 1 2454 183 98 75 chrX 35061125 35061514 -127538416 + L1ME1 LINE L1 5458 5836 -498 2012 120 0 0 chrX 35061514 35061805 -127538125 - AluSx SINE Alu -21 291 1 2454 183 98 75 chrX 35061805 35061970 -127537960 + L1ME1 LINE L1 5836 5996 -338 1689 132 8 4 chrX 35061970 35062235 -127537695 - AluJb SINE Alu -17 295 30 2454 183 98 75 chrX 35062235 35062381 -127537549 + L1ME1 LINE L1 5996 6334 0 416 233 59 15 chrX 35062467 35062618 -127537312 - L1ME2 LINE L1 -297 5867 5716 2163 125 0 0 chrX 35063435 35063747 -127536183 - AluSx SINE Alu 0 312 1 1128 203 18 0 chrX 35063747 35063964 -127535966 - L1MB2 LINE L1 -345 5826 5606 850 191 13 6 chrX 35064035 35064192 -127535738 - MER5B DNA MER1_type -3 175 18 2110 100 3 3 chrX 35064312 35064602 -127535328 - AluSg SINE Alu -20 290 1 1866 161 0 0 chrX 35064607 35064898 -127535032 - AluJb SINE Alu -44 268 1 202 222 0 0 chrX 35065029 35065074 -127534856 - MIR SINE MIR -107 155 111 2456 96 0 3 chrX 35065085 35065398 -127534532 - AluSx SINE Alu 0 312 1 1781 118 12 4 chrX 35066047 35066293 -127533637 + AluSx SINE Alu 1 248 -64 752 286 173 30 chrX 35066378 35066847 -127533083 - LTR67 LTR ERVL -2 555 20 2220 130 16 50 chrX 35066851 35067017 -127532913 + MLT1A1 LTR MaLR 1 171 -194 2379 83 7 3 chrX 35067017 35067318 -127532612 + AluSq SINE Alu 1 302 -11 2220 130 16 50 chrX 35067318 35067529 -127532401 + MLT1A1 LTR MaLR 171 365 0 205 359 0 58 chrX 35067833 35067882 -127532048 - MIR3 SINE MIR -10 198 157 1904 185 109 0 chrX 35067882 35068239 -127531691 - MSTD LTR MaLR 0 396 1 205 359 0 58 chrX 35068239 35068292 -127531638 - MIR3 SINE MIR -51 157 102 303 323 97 26 chrX 35068338 35068461 -127531469 + MIR SINE MIR 94 232 -30 2243 101 0 24 chrX 35068461 35068758 -127531172 - AluSx SINE Alu -22 290 1 303 323 97 26 chrX 35068758 35068789 -127531141 + MIR SINE MIR 232 259 -3 2269 87 0 11 chrX 35068789 35069098 -127530832 + AluSx SINE Alu 1 306 0 2455 106 0 0 chrX 35069328 35069640 -127530290 + AluSx SINE Alu 1 312 0 1996 183 117 16 chrX 35069649 35070152 -127529778 - L1ME2 LINE L1 -249 5915 5351 2260 113 3 10 chrX 35070152 35070462 -127529468 - AluSq SINE Alu -5 308 1 1996 183 117 16 chrX 35070462 35070504 -127529426 - L1ME2 LINE L1 -813 5351 5315 24 0 0 0 chrX 35070504 35070528 -127529402 + AT_rich Low_complexity Low_complexity 1 24 0 777 163 54 134 chrX 35070618 35070980 -127528950 - L1ME1 LINE L1 -21 6226 5877 5508 80 16 12 chrX 35071013 35071374 -127528556 - L1PB1 LINE L1 -1 6150 5792 207 0 0 0 chrX 35071374 35071397 -127528533 + (TA)n Simple_repeat Simple_repeat 2 24 0 5508 80 16 12 chrX 35071397 35071787 -127528143 - L1PB1 LINE L1 -359 5792 5393 2509 82 0 0 chrX 35071787 35072091 -127527839 - AluSg SINE Alu -6 304 1 5508 80 16 12 chrX 35072091 35072146 -127527784 - L1PB1 LINE L1 -758 5393 5340 1362 188 110 0 chrX 35072144 35072453 -127527477 - L1ME1 LINE L1 -337 5898 5556 * 746 216 17 11 chrX 35072455 35072631 -127527299 - MLT1A1 LTR MaLR 0 365 189 1629 188 50 35 chrX 35072632 35073175 -127526755 - L1ME1 LINE L1 -682 5553 5014 680 248 51 9 chrX 35073179 35073393 -127526537 - L1ME1 LINE L1 -4333 2063 1841 2445 70 0 7 chrX 35073414 35073712 -127526218 - AluSc SINE Alu -13 296 1 1115 68 7 20 chrX 35073714 35073861 -127526069 - AluSq/x SINE Alu -168 145 1 803 236 28 31 chrX 35073866 35074120 -127525810 - L1ME1 LINE L1 -4576 1820 1568 691 156 13 27 chrX 35074121 35074137 -127525793 - MLT1A1 LTR MaLR -222 152 137 1935 160 24 0 chrX 35074137 35074430 -127525500 - AluJb SINE Alu -12 300 1 691 156 13 27 chrX 35074430 35074566 -127525364 - MLT1A1 LTR MaLR -237 137 2 249 33 0 0 chrX 35074658 35074688 -127525242 + (TG)n Simple_repeat Simple_repeat 2 31 0 785 267 72 74 chrX 35074711 35075465 -127524465 - L1ME1 LINE L1 -5052 1344 593 1797 127 58 34 chrX 35075523 35075814 -127524116 - AluSx SINE Alu -14 298 1 399 304 58 88 chrX 35075827 35076139 -127523791 - L1ME1 LINE L1 -5552 653 333 1800 150 37 17 chrX 35076139 35076439 -127523491 + AluJb SINE Alu 1 306 -6 399 304 58 88 chrX 35076439 35076553 -127523377 - L1ME1 LINE L1 -5872 333 217 1672 88 0 44 chrX 35076553 35076780 -127523150 - AluSq SINE Alu -15 298 82 2349 98 0 25 chrX 35076780 35077095 -127522835 - AluSq SINE Alu -5 308 1 399 304 58 88 chrX 35077095 35077180 -127522750 - L1ME1 LINE L1 -5986 219 155 22 35 0 0 chrX 35077202 35077231 -127522699 + AT_rich Low_complexity Low_complexity 1 29 0 181 0 0 65 chrX 35077331 35077362 -127522568 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2225 100 0 0 chrX 35077364 35077643 -127522287 - AluSx SINE Alu -31 281 3 2033 144 0 13 chrX 35077651 35077950 -127521980 - AluJo SINE Alu -17 295 1 2301 104 7 0 chrX 35078282 35078581 -127521349 - AluSx SINE Alu -11 301 1 225 268 14 28 chrX 35078629 35078700 -127521230 - L2 LINE L2 -2 3270 3201 2485 90 0 0 chrX 35079539 35079838 -127520092 - AluSx SINE Alu -13 299 1 1445 176 46 3 chrX 35080245 35080403 -127519527 - MER33 DNA MER1_type -2270 315 165 2395 86 3 7 chrX 35080403 35080705 -127519225 + AluSx SINE Alu 1 301 -11 1445 176 46 3 chrX 35080705 35080848 -127519082 - MER33 DNA MER1_type -2420 165 1 4240 59 10 29 chrX 35080928 35081102 -127518828 - PABL_A LTR ERV1 0 660 484 2211 110 0 23 chrX 35081102 35081403 -127518527 - AluSq SINE Alu -19 294 1 4240 59 10 29 chrX 35081403 35081807 -127518123 - PABL_A LTR ERV1 -176 484 93 24 32 0 0 chrX 35081809 35081840 -127518090 + AT_rich Low_complexity Low_complexity 1 31 0 2188 88 3 0 chrX 35082782 35083089 -127516841 - AluSx SINE Alu 0 308 1 655 71 0 0 chrX 35083089 35083174 -127516756 - PABL_A LTR ERV1 -575 85 1 183 80 0 0 chrX 35085176 35085201 -127514729 + (TCCCC)n Simple_repeat Simple_repeat 1 25 0 519 149 0 74 chrX 35085582 35085703 -127514227 + MER103 DNA DNA 8 119 -47 2426 90 0 0 chrX 35086416 35086715 -127513215 + AluSg SINE Alu 1 299 -11 2445 68 3 0 chrX 35086748 35087042 -127512888 - AluSp SINE Alu -18 295 1 1869 160 3 31 chrX 35087195 35087514 -127512416 + AluJb SINE Alu 1 310 -2 363 151 38 184 chrX 35087516 35087580 -127512350 - MER112 DNA MER1_type -102 158 86 2289 86 0 3 chrX 35087580 35087871 -127512059 - AluSg SINE Alu -19 291 2 363 151 38 184 chrX 35087871 35087991 -127511939 - MER112 DNA MER1_type -174 86 1 471 188 115 12 chrX 35088009 35088174 -127511756 - L1MC4 LINE L1 0 8042 7861 629 157 9 28 chrX 35088174 35088282 -127511648 + FRAM SINE Alu 58 163 -13 1086 236 40 88 chrX 35089050 35089299 -127510631 - MLT1I LTR MaLR 0 409 150 2650 59 0 0 chrX 35089299 35089604 -127510326 - AluY SINE Alu -6 305 1 2203 105 17 0 chrX 35089604 35089899 -127510031 - AluSx SINE Alu -12 300 1 1086 236 40 88 chrX 35089899 35090068 -127509862 - MLT1I LTR MaLR -257 152 10 1528 149 4 25 chrX 35090073 35090314 -127509616 + AluJo SINE Alu 1 236 -76 4164 152 29 3 chrX 35090316 35091009 -127508921 + MER50 LTR ERV1 1 711 -23 416 138 0 0 chrX 35091010 35091075 -127508855 + AluS SINE Alu 233 297 -13 1740 131 28 0 chrX 35092171 35092423 -127507507 + AluJo SINE Alu 40 298 -14 2669 80 19 21 chrX 35092858 35093233 -127506697 - THE1C LTR MaLR -1 374 1 363 121 0 0 chrX 35093271 35093329 -127506601 + (TCCCC)n Simple_repeat Simple_repeat 4 61 0 340 259 54 70 chrX 35093835 35094020 -127505910 - MER112 DNA MER1_type -40 220 39 1866 145 22 4 chrX 35094021 35094317 -127505613 + AluJo SINE Alu 1 301 0 2485 71 0 0 chrX 35094325 35094620 -127505310 + AluSq SINE Alu 7 301 -12 2213 96 6 35 chrX 35094664 35094976 -127504954 + AluSx SINE Alu 1 303 -9 1359 86 17 0 chrX 35094976 35095151 -127504779 + AluSg/x SINE Alu 132 309 -1 439 37 0 0 chrX 35095389 35095443 -127504487 + MADE1 DNA Mariner 1 54 -26 614 250 46 7 chrX 35095861 35096013 -127503917 - MIR SINE MIR -73 189 32 1010 232 60 0 chrX 35096117 35096350 -127503580 + L1M4 LINE L1 3775 4021 -2125 530 45 0 146 chrX 35096354 35096403 -127503527 - MADE1 DNA Mariner -4 76 44 2354 89 3 0 chrX 35096403 35096696 -127503234 + AluSp SINE Alu 1 294 -19 530 45 0 146 chrX 35096696 35096735 -127503195 - MADE1 DNA Mariner -36 44 1 1022 182 5 11 chrX 35096738 35096925 -127503005 + AluJb SINE Alu 126 311 -1 1467 204 6 57 chrX 35096926 35097020 -127502910 + L1M4 LINE L1 4011 4108 -2038 2298 117 0 3 chrX 35097020 35097319 -127502611 - AluSx SINE Alu -14 298 1 1467 204 6 57 chrX 35097319 35097577 -127502353 + L1M4 LINE L1 4108 4345 -1801 579 124 21 10 chrX 35097579 35097676 -127502254 + MER4A LTR ERV1 1 98 -566 1732 100 242 21 chrX 35097676 35098007 -127501923 + MER4A LTR ERV1 261 664 0 1535 216 31 68 chrX 35098007 35098143 -127501787 + L1M4 LINE L1 4344 4484 -1662 2358 111 0 0 chrX 35098143 35098450 -127501480 + AluSg SINE Alu 1 307 -3 1535 216 31 68 chrX 35098450 35098810 -127501120 + L1M4 LINE L1 4484 4819 -1327 1848 160 0 36 chrX 35098810 35099117 -127500813 + AluJo SINE Alu 3 298 -14 1535 216 31 68 chrX 35099117 35099174 -127500756 + L1M4 LINE L1 4819 4877 -1269 * 2698 193 63 20 chrX 35099172 35099332 -127500598 + L1MC/D LINE L1 4725 4877 -1482 2260 105 7 7 chrX 35099332 35099628 -127500302 + AluSx SINE Alu 1 296 -16 2698 193 63 20 chrX 35099628 35099771 -127500159 + L1MC/D LINE L1 4877 5012 -1347 2467 70 0 7 chrX 35099771 35100073 -127499857 + AluY SINE Alu 1 300 -11 2698 193 63 20 chrX 35100073 35100775 -127499155 + L1MC/D LINE L1 5012 5780 -579 2404 112 0 0 chrX 35100775 35101088 -127498842 + AluSq SINE Alu 1 313 0 325 196 119 53 chrX 35101139 35101292 -127498638 - L1MEc LINE L1 -2953 3262 2042 28 29 0 0 chrX 35101317 35101352 -127498578 + AT_rich Low_complexity Low_complexity 1 35 0 468 257 0 0 chrX 35101826 35101931 -127497999 - MLT1J LTR MaLR -1 510 406 1177 150 142 0 chrX 35101931 35102155 -127497775 + L1MA8 LINE L1 5839 6106 -185 2324 102 0 6 chrX 35102155 35102468 -127497462 + AluSp SINE Alu 2 312 -1 1177 150 142 0 chrX 35102468 35102503 -127497427 + L1MA8 LINE L1 6106 6135 -156 1840 130 78 0 chrX 35102503 35102810 -127497120 - AluSx SINE Alu 0 312 1 2148 117 3 26 chrX 35103307 35103614 -127496316 + AluJb SINE Alu 3 302 -10 396 329 70 4 chrX 35103683 35103911 -127496019 - L2 LINE L2 -219 3053 2811 834 328 0 0 chrX 35103915 35104153 -127495777 - MIR SINE MIR -10 252 15 207 133 0 44 chrX 35104202 35104247 -127495683 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 2434 90 3 3 chrX 35104253 35104563 -127495367 - AluSq SINE Alu -3 310 1 1820 159 20 74 chrX 35104569 35104645 -127495285 - L1MB7 LINE L1 -14 6170 6091 1805 147 0 67 chrX 35104645 35104959 -127494971 - AluJo SINE Alu -17 295 3 1820 159 20 74 chrX 35104959 35105240 -127494690 - L1MB7 LINE L1 -93 6091 5839 2561 77 0 0 chrX 35105240 35105551 -127494379 - AluSq SINE Alu -2 311 1 1820 159 20 74 chrX 35105551 35105638 -127494292 - L1MB7 LINE L1 -345 5839 5749 1927 197 2 13 chrX 35105660 35106056 -127493874 - L1PB4 LINE L1 -1 6155 5764 251 306 96 106 chrX 35106058 35106333 -127493597 - L2 LINE L2 -568 2746 2474 2012 102 3 51 chrX 35106333 35106656 -127493274 - AluSx SINE Alu 0 309 1 251 306 96 106 chrX 35106656 35106794 -127493136 - L2 LINE L2 -840 2474 2336 383 127 0 0 chrX 35307299 35307362 -127292568 + Alu SINE Alu 240 302 0 13561 38 6 4 chrX 35307516 35309207 -127290723 + L1P LINE L1 2017 3710 -2436 9228 52 10 8 chrX 35309207 35310276 -127289654 - MER11C LTR ERVK 0 1071 1 8085 67 5 3 chrX 35310276 35311274 -127288656 - HERVK11 LTR ERVK 0 7953 6954 * 11453 82 5 1 chrX 35311258 35312730 -127287200 - HERVK11 LTR ERVK -1188 6765 5287 7622 74 2 1 chrX 35312744 35313675 -127286255 - MER11C LTR ERVK -136 935 4 14377 43 0 3 chrX 35313675 35316151 -127283779 + L1PA5 LINE L1 3702 6149 -5 27 49 0 0 chrX 35316161 35316202 -127283728 + AT_rich Low_complexity Low_complexity 1 41 0 1677 108 0 0 chrX 35316701 35316924 -127283006 + AluSq SINE Alu 86 308 -5 21 0 0 0 chrX 35317003 35317024 -127282906 + AT_rich Low_complexity Low_complexity 1 21 0 4357 172 41 18 chrX 35317142 35317400 -127282530 + L1ME1 LINE L1 5265 5516 -650 2254 109 0 0 chrX 35317400 35317694 -127282236 + AluSg SINE Alu 1 294 -16 4357 172 41 18 chrX 35317694 35318312 -127281618 + L1ME1 LINE L1 5516 6161 -5 488 277 6 78 chrX 35318333 35318499 -127281431 + L2 LINE L2 2530 2683 -631 2508 81 0 3 chrX 35318530 35318840 -127281090 + AluSc SINE Alu 1 309 0 460 306 27 14 chrX 35319192 35319339 -127280591 + MIR SINE MIR 6 154 -108 282 233 192 8 chrX 35319383 35319503 -127280427 - MIR SINE MIR -3 259 118 1852 108 26 99 chrX 35319505 35319848 -127280082 + AluYb8 SINE Alu 1 318 0 2759 170 135 26 chrX 35319958 35320571 -127279359 + MER21B LTR ERV1 184 863 0 13992 172 35 27 chrX 35320640 35321782 -127278148 + MER21B-int LTR ERV1 1647 2779 -1412 2307 99 0 6 chrX 35321782 35322094 -127277836 + AluSx SINE Alu 1 310 -2 13992 172 35 27 chrX 35322094 35324873 -127275057 + MER21B-int LTR ERV1 2779 4149 -42 1688 99 0 0 chrX 35324904 35325125 -127274805 - AluSq SINE Alu -1 312 92 4335 157 87 13 chrX 35325169 35325928 -127274002 + MER21B LTR ERV1 5 819 -44 1728 235 78 25 chrX 35325969 35326560 -127273370 - L2 LINE L2 -1150 2164 1543 263 202 26 149 chrX 35326569 35326621 -127273309 + MIR SINE MIR 48 80 -182 2257 111 0 0 chrX 35326621 35326919 -127273011 - AluSg SINE Alu -12 298 1 263 202 26 149 chrX 35326919 35326980 -127272950 + MIR SINE MIR 80 147 -115 970 115 7 7 chrX 35327110 35327249 -127272681 + AluJb SINE Alu 1 139 -173 4347 43 10 0 chrX 35327351 35327866 -127272064 + LTR10C LTR ERV1 71 590 -1 1490 138 36 28 chrX 35327943 35328196 -127271734 - MER21B-int LTR ERV1 -3932 259 5 2259 114 133 4 chrX 35328196 35328675 -127271255 + LTR35 LTR ERV1 1 618 0 5059 147 41 13 chrX 35328711 35329541 -127270389 - MER21B LTR ERV1 -7 856 4 6233 136 35 42 chrX 35329608 35330010 -127269920 - MER21B-int LTR ERV1 -42 4149 3746 2146 220 28 28 chrX 35330010 35330515 -127269415 - LTR10B LTR ERV1 0 505 1 6233 136 35 42 chrX 35330515 35331217 -127268713 - MER21B-int LTR ERV1 -445 3746 3053 * 7909 153 76 45 chrX 35331208 35331429 -127268501 - LTR8A-int LTR ERV1 -985 3206 2993 186 191 0 43 chrX 35331429 35331476 -127268454 + MER5A DNA MER1_type 16 60 -129 7909 153 76 45 chrX 35331476 35331726 -127268204 - LTR8A-int LTR ERV1 -1198 2993 2752 2234 113 0 7 chrX 35331726 35332028 -127267902 - AluSq SINE Alu -13 300 1 7909 153 76 45 chrX 35332028 35333021 -127266909 - LTR8A-int LTR ERV1 -1439 2752 1648 1331 214 36 52 chrX 35333064 35333451 -127266479 - LTR8A-int LTR ERV1 -2401 1790 1410 3167 204 58 57 chrX 35333566 35334444 -127265486 - LTR8A-int LTR ERV1 -2252 4506 3628 2732 155 66 29 chrX 35334445 35334537 -127265393 - LTR8A-int LTR ERV1 -3656 535 448 2871 166 109 51 chrX 35334537 35335224 -127264706 - LTR8A LTR ERV1 0 727 1 2732 155 66 29 chrX 35335224 35335567 -127264363 - LTR8A-int LTR ERV1 -3743 448 76 2804 190 28 49 chrX 35335567 35336215 -127263715 - LTR27 LTR ERV1 -1 635 2 2732 155 66 29 chrX 35336215 35336294 -127263636 - LTR8A-int LTR ERV1 -4115 76 1 4872 158 68 15 chrX 35336307 35337124 -127262806 - MER21B LTR ERV1 -2 861 1 459 0 0 0 chrX 35337556 35337607 -127262323 + (CA)n Simple_repeat Simple_repeat 2 52 0 528 329 69 0 chrX 35337983 35338199 -127261731 - MIR SINE MIR -27 235 5 464 249 60 38 chrX 35338339 35338524 -127261406 - L1MC4a LINE L1 -539 7269 7081 231 268 0 0 chrX 35339331 35339402 -127260528 - HAL1 LINE L1 -2 2505 2435 2203 75 0 0 chrX 35339549 35339816 -127260114 - AluSc SINE Alu -8 301 35 219 88 0 0 chrX 35339968 35340002 -127259928 + (TC)n Simple_repeat Simple_repeat 1 34 0 1307 203 112 61 chrX 35340125 35340608 -127259322 - MLT1H LTR MaLR 0 549 1 1012 173 0 0 chrX 35340871 35341027 -127258903 + FRAM SINE Alu 1 155 -21 26 0 0 0 chrX 35341573 35341599 -127258331 + AT_rich Low_complexity Low_complexity 1 26 0 289 258 11 32 chrX 35341823 35341916 -127258014 + MIR3 SINE MIR 112 202 -6 24 67 0 0 chrX 35343412 35343457 -127256473 + AT_rich Low_complexity Low_complexity 1 45 0 1575 157 149 0 chrX 35344005 35344267 -127255663 - AluJo SINE Alu -1 301 1 831 173 0 8 chrX 35344270 35344403 -127255527 - AluJo/FLAM SINE Alu -169 133 2 23 0 0 0 chrX 35344787 35344810 -127255120 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrX 35345106 35345130 -127254800 + AT_rich Low_complexity Low_complexity 1 24 0 1041 156 12 6 chrX 35346615 35346788 -127253142 + AluSq SINE Alu 1 174 -139 294 95 0 0 chrX 35346897 35346939 -127252991 + (TA)n Simple_repeat Simple_repeat 2 43 0 201 154 0 0 chrX 35347462 35347501 -127252429 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1396 174 4 26 chrX 35347859 35348123 -127251807 - AluSq SINE Alu -53 260 3 2048 149 0 10 chrX 35348258 35348567 -127251363 + AluJb SINE Alu 1 306 -6 21 0 0 0 chrX 35348576 35348597 -127251333 + AT_rich Low_complexity Low_complexity 1 21 0 1868 139 7 37 chrX 35348899 35349194 -127250736 - AluJo SINE Alu -24 288 3 1259 160 10 5 chrX 35349855 35350049 -127249881 - AluJb SINE Alu -16 296 102 1835 91 4 42 chrX 35350050 35350314 -127249616 + AluSg SINE Alu 45 298 -12 240 125 0 0 chrX 35350322 35350354 -127249576 - Alu SINE Alu -17 158 127 2377 60 0 3 chrX 35350587 35350911 -127249019 + AluY SINE Alu 1 323 0 278 203 14 40 chrX 35351897 35351971 -127247959 - MIR3 SINE MIR -134 74 3 13545 36 1 0 chrX 35352632 35354943 -127244987 - L1PA4 LINE L1 -3 6152 3841 28 29 0 0 chrX 35355070 35355105 -127244825 + AT_rich Low_complexity Low_complexity 1 35 0 354 284 93 54 chrX 35356964 35357026 -127242904 - MIR SINE MIR -50 212 154 1813 144 10 23 chrX 35357026 35357325 -127242605 - AluJo SINE Alu -17 295 1 354 284 93 54 chrX 35357325 35357466 -127242464 - MIR SINE MIR -108 154 1 2352 65 0 14 chrX 35357543 35357835 -127242095 - AluY SINE Alu -7 304 17 804 154 31 23 chrX 35358024 35358154 -127241776 - FLAM_C SINE Alu -2 131 1 323 276 91 55 chrX 35358502 35358701 -127241229 - L1MC4 LINE L1 -1 8041 7836 408 139 15 0 chrX 35358719 35358793 -127241137 - L1ME2 LINE L1 0 6166 6089 250 257 0 14 chrX 35359317 35359391 -127240539 - L1ME1 LINE L1 -118 6048 5976 1299 194 178 54 chrX 35359913 35360424 -127239506 + MLT1F1 LTR MaLR 2 567 0 1273 132 14 0 chrX 35360546 35360759 -127239171 - L1MD2 LINE L1 -1 6358 6143 2075 125 0 42 chrX 35361697 35362010 -127237920 - AluSx SINE Alu -12 300 1 2146 97 44 7 chrX 35362230 35362528 -127237402 - AluSx SINE Alu -3 309 1 1760 182 3 7 chrX 35362530 35362826 -127237104 - AluJo SINE Alu -17 295 1 660 97 133 0 chrX 35363359 35363472 -127236458 - L1MA3 LINE L1 -5 6300 6173 328 39 0 20 chrX 35363996 35364047 -127235883 - AluSc SINE Alu -2 297 248 718 184 11 87 chrX 35364233 35364249 -127235681 - FRAM SINE Alu -136 40 24 2486 59 0 3 chrX 35364249 35364552 -127235378 - AluY SINE Alu -9 302 1 718 184 11 87 chrX 35364552 35364720 -127235210 - FRAM SINE Alu -152 24 1 2039 89 6 80 chrX 35364844 35365168 -127234762 - AluSx SINE Alu -12 300 1 24 53 0 0 chrX 35365812 35365850 -127234080 + AT_rich Low_complexity Low_complexity 1 38 0 458 221 176 18 chrX 35366024 35366296 -127233634 + L1ME4a LINE L1 5794 6108 -13 1616 139 12 0 chrX 35366476 35366727 -127233203 - L1PB3 LINE L1 -1 6153 5900 239 284 95 95 chrX 35366727 35366785 -127233145 + MIR SINE MIR 93 150 -112 2470 73 0 3 chrX 35366785 35367088 -127232842 + AluSp SINE Alu 1 302 -11 239 284 95 95 chrX 35367088 35367177 -127232753 + MIR SINE MIR 149 240 -22 2158 110 0 3 chrX 35367391 35367681 -127232249 - AluJb SINE Alu -23 289 1 744 174 0 43 chrX 35368217 35368355 -127231575 - FLAM_C SINE Alu -1 132 1 413 316 13 20 chrX 35368447 35368599 -127231331 - MIR3 SINE MIR -3 205 55 1203 219 0 5 chrX 35368652 35368876 -127231054 - MER58A DNA MER1_type -1 223 1 772 152 8 23 chrX 35370387 35370519 -127229411 + FLAM_C SINE Alu 1 130 -3 544 112 34 0 chrX 35370540 35370629 -127229301 - AluSp/q SINE Alu -9 304 213 896 192 10 30 chrX 35371043 35371246 -127228684 + MER3 DNA MER1_type 11 209 0 2258 88 20 3 chrX 35371368 35371662 -127228268 + AluSx SINE Alu 1 299 -13 22 0 0 0 chrX 35372200 35372222 -127227708 + AT_rich Low_complexity Low_complexity 1 22 0 2070 144 3 10 chrX 35372353 35372665 -127227265 - AluJb SINE Alu -2 310 1 1099 154 5 25 chrX 35373643 35373844 -127226086 + MER3 DNA MER1_type 2 198 -11 228 135 0 0 chrX 35374292 35374329 -127225601 + (T)n Simple_repeat Simple_repeat 1 37 0 2553 87 0 0 chrX 35374490 35374800 -127225130 - AluSq SINE Alu -3 310 1 1896 128 24 7 chrX 35375568 35375857 -127224073 - AluJo SINE Alu -18 294 1 615 83 0 10 chrX 35375984 35376080 -127223850 - AluJ/FRAM SINE Alu 0 312 218 * 792 215 0 13 chrX 35376076 35376234 -127223696 + AluJb SINE Alu 136 291 -21 269 94 4 0 chrX 35376252 35376297 -127223633 - Alu SINE Alu -14 288 252 992 196 6 0 chrX 35376407 35376586 -127223344 + AluJb SINE Alu 119 298 -14 191 304 0 0 chrX 35376950 35376996 -127222934 + L3 LINE CR1 1437 1482 -95 27 73 0 0 chrX 35377470 35377525 -127222405 + AT_rich Low_complexity Low_complexity 1 55 0 306 68 23 0 chrX 35378346 35378390 -127221540 + Alu SINE Alu 2 46 -255 2207 95 0 10 chrX 35379078 35379372 -127220558 + AluSx SINE Alu 1 291 -21 1581 164 0 12 chrX 35379407 35379651 -127220279 - AluJb SINE Alu -14 298 58 269 157 301 0 chrX 35379692 35379775 -127220155 + L1MC5 LINE L1 7805 7912 -49 25 51 0 0 chrX 35383622 35383661 -127216269 + AT_rich Low_complexity Low_complexity 1 39 0 689 130 30 46 chrX 35383749 35383880 -127216050 - FLAM_C SINE Alu 0 133 5 180 311 0 0 chrX 35384239 35384284 -127215646 - L2 LINE L2 -5 3267 3223 384 348 39 17 chrX 35384364 35384545 -127215385 - L2 LINE L2 -154 3118 2934 1822 130 60 3 chrX 35384899 35385184 -127214746 - AluJb SINE Alu -11 301 1 1424 284 135 30 chrX 35385735 35386396 -127213534 + L3 LINE CR1 843 1572 -5 1821 169 0 26 chrX 35386623 35386930 -127213000 + AluJb SINE Alu 1 299 -13 197 65 32 0 chrX 35387697 35387728 -127212202 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3162 258 95 17 chrX 35389178 35389622 -127210308 - L2 LINE L2 -509 2805 2397 885 105 0 70 chrX 35389622 35389765 -127210165 + AluJ SINE Alu 1 133 -169 3162 258 95 17 chrX 35389765 35390326 -127209604 - L2 LINE L2 -917 2397 1721 302 207 0 0 chrX 35390347 35390405 -127209525 - L1MC5 LINE L1 -68 7893 7836 302 240 133 36 chrX 35390523 35390719 -127209211 - L1MC5 LINE L1 -138 7823 7609 813 205 40 63 chrX 35390818 35391120 -127208810 - L1MC5 LINE L1 -396 7565 7271 765 188 24 72 chrX 35391508 35391716 -127208214 + AluJ SINE Alu 112 309 -3 1501 186 77 45 chrX 35391723 35392165 -127207765 - L1ME2 LINE L1 -10 6154 5699 927 209 13 94 chrX 35392169 35392524 -127207406 - L1MC5 LINE L1 -941 7076 6694 1879 121 96 0 chrX 35392524 35392796 -127207134 + AluSx SINE Alu 1 298 -14 2361 104 0 0 chrX 35392798 35393107 -127206823 + AluSc SINE Alu 1 309 0 927 209 13 94 chrX 35393107 35393203 -127206727 - L1MC5 LINE L1 -1212 6805 6703 2365 80 13 0 chrX 35393234 35393536 -127206394 + AluSp SINE Alu 2 307 -6 5111 134 48 60 chrX 35393610 35394299 -127205631 + Tigger2 DNA MER2_type 2 698 -2020 1982 103 0 4 chrX 35394299 35394560 -127205370 + AluSq SINE Alu 41 300 -13 5111 134 48 60 chrX 35394560 35394867 -127205063 + Tigger2 DNA MER2_type 698 987 -1731 1720 161 91 0 chrX 35394867 35395153 -127204777 + AluSx SINE Alu 1 312 0 5111 134 48 60 chrX 35395153 35395206 -127204724 + Tigger2 DNA MER2_type 987 1039 -1679 1464 131 12 37 chrX 35395207 35395451 -127204479 - AluJo SINE Alu -14 298 61 382 115 16 0 chrX 35395455 35395516 -127204414 + Tigger2 DNA MER2_type 1278 1339 -1379 1384 129 7 91 chrX 35395516 35395755 -127204175 - Tigger2 DNA MER2_type -1426 1292 1079 1904 153 10 10 chrX 35395755 35396063 -127203867 - 7SLRNA srpRNA srpRNA -12 308 1 1384 129 7 91 chrX 35396063 35396110 -127203820 - Tigger2 DNA MER2_type -1639 1079 1030 428 159 0 0 chrX 35396110 35396179 -127203751 + AluJ/FLAM SINE Alu 1 69 -243 847 113 152 0 chrX 35396199 35396350 -127203580 + Tigger2 DNA MER2_type 2535 2708 -10 2357 196 142 17 chrX 35396565 35397106 -127202824 + L1MC4 LINE L1 7044 7695 -347 2103 115 0 3 chrX 35397106 35397392 -127202538 - AluSx SINE Alu -25 287 3 2357 196 142 17 chrX 35397392 35397554 -127202376 + L1MC4 LINE L1 7695 7835 -207 398 205 33 25 chrX 35397575 35397697 -127202233 + L1MC4 LINE L1 7919 8041 -1 319 194 257 27 chrX 35397743 35397965 -127201965 - L1MC4a LINE L1 -1548 6260 5988 1912 152 7 7 chrX 35398077 35398379 -127201551 - AluJb SINE Alu -10 302 1 572 264 40 0 chrX 35398437 35398585 -127201345 - L2 LINE L2 -1881 1433 1280 560 199 126 136 chrX 35398585 35398684 -127201246 - MER5A DNA MER1_type 0 189 90 2444 82 0 3 chrX 35398684 35398987 -127200943 - AluSx SINE Alu -10 302 1 560 199 126 136 chrX 35398987 35399000 -127200930 - MER5A DNA MER1_type -99 90 78 891 165 0 0 chrX 35399000 35399133 -127200797 - FLAM_A SINE Alu 0 133 1 560 199 126 136 chrX 35399133 35399210 -127200720 - MER5A DNA MER1_type -111 78 1 * 844 220 11 26 chrX 35399210 35399390 -127200540 - L2 LINE L2 -2028 1286 1110 2294 176 34 22 chrX 35399823 35400273 -127199657 + L1MB2 LINE L1 5667 6125 -46 2294 103 3 22 chrX 35400273 35400584 -127199346 + AluSq SINE Alu 1 305 -8 2294 176 34 22 chrX 35400584 35400632 -127199298 + L1MB2 LINE L1 6125 6171 0 203 200 0 0 chrX 35401494 35401529 -127198401 + A-rich Low_complexity Low_complexity 1 35 0 1965 118 0 46 chrX 35402952 35403257 -127196673 - AluSx SINE Alu -21 291 1 2131 145 3 0 chrX 35403259 35403569 -127196361 - AluJb SINE Alu -1 311 1 427 256 33 133 chrX 35404096 35404174 -127195756 + MIR SINE MIR 15 99 -163 2216 87 56 0 chrX 35404174 35404462 -127195468 + AluSg SINE Alu 2 305 -5 427 256 33 133 chrX 35404462 35404518 -127195412 + MIR SINE MIR 99 159 -103 724 145 0 65 chrX 35404518 35404656 -127195274 - FLAM_C SINE Alu -4 129 1 427 256 33 133 chrX 35404656 35404790 -127195140 + MIR SINE MIR 159 257 -5 808 241 6 12 chrX 35404816 35404986 -127194944 + MER5B DNA MER1_type 10 178 0 727 303 242 19 chrX 35404988 35405575 -127194355 - L3 LINE CR1 -73 1504 787 209 412 0 12 chrX 35405585 35405670 -127194260 - L2 LINE L2 -48 3224 3141 2448 90 0 0 chrX 35405929 35406239 -127193691 + AluSq SINE Alu 1 310 -3 331 196 9 24 chrX 35406759 35406886 -127193044 - MIR SINE MIR -6 256 76 1061 172 0 21 chrX 35407908 35408094 -127191836 - AluJo SINE Alu -10 302 121 614 270 64 35 chrX 35410063 35410408 -127189522 + L1ME3A LINE L1 5594 5948 -222 2357 74 3 3 chrX 35410417 35410713 -127189217 - AluSq SINE Alu -15 298 3 283 345 73 0 chrX 35410993 35411103 -127188827 + L2 LINE L2 3149 3266 -6 2303 84 7 0 chrX 35411552 35411838 -127188092 - AluSx SINE Alu -24 288 1 2308 98 0 3 chrX 35413193 35413490 -127186440 - AluSx SINE Alu -12 300 5 243 132 0 0 chrX 35413492 35413530 -127186400 + Alu SINE Alu 228 265 -34 280 244 126 17 chrX 35414457 35414576 -127185354 - MIR SINE MIR -6 256 125 2467 76 3 0 chrX 35414778 35415082 -127184848 + AluSp SINE Alu 2 306 -7 2473 85 0 0 chrX 35415188 35415495 -127184435 + AluSc SINE Alu 2 308 -1 1178 231 49 73 chrX 35416108 35416881 -127183049 - L1ME3A LINE L1 -232 5938 5174 577 240 145 11 chrX 35417428 35417607 -127182323 + MIR SINE MIR 2 204 -58 323 290 19 56 chrX 35417778 35417885 -127182045 + L3 LINE CR1 967 1069 -508 1914 144 28 0 chrX 35417948 35418233 -127181697 + AluJo SINE Alu 1 293 -19 191 311 0 0 chrX 35419551 35419612 -127180318 + L3 LINE CR1 693 753 -824 792 134 0 17 chrX 35420231 35420350 -127179580 - FLAM_C SINE Alu -16 117 1 794 271 72 40 chrX 35420366 35420757 -127179173 - L2 LINE L2 -129 3184 2776 207 0 0 0 chrX 35420760 35420783 -127179147 + (T)n Simple_repeat Simple_repeat 1 23 0 221 225 0 0 chrX 35420790 35420830 -127179100 - MIR SINE MIR -4 258 219 * 284 268 216 0 chrX 35420796 35420893 -127179037 - L2 LINE L2 -16 3297 3180 895 129 81 21 chrX 35421958 35422144 -127177786 + MER20 DNA MER1_type 1 197 -22 405 226 0 104 chrX 35422832 35422938 -127176992 + L2 LINE L2 2498 2592 -722 1751 260 15 23 chrX 35422945 35423422 -127176508 + L2 LINE L2 2838 3310 -3 2092 97 0 17 chrX 35423536 35423872 -127176058 + AluJb SINE Alu 3 333 0 395 274 97 0 chrX 35424075 35424199 -127175731 + L2 LINE L2 2922 3057 -215 400 274 113 81 chrX 35424249 35424768 -127175162 + MLT1G1 LTR MaLR 16 587 -1 239 254 51 0 chrX 35424807 35424866 -127175064 + L2 LINE L2 3252 3313 0 2410 73 0 0 chrX 35425308 35425596 -127174334 - AluSx SINE Alu -24 288 1 189 0 0 0 chrX 35427973 35427994 -127171936 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2331 109 0 0 chrX 35428193 35428504 -127171426 - AluSq SINE Alu -2 311 1 290 297 157 42 chrX 35430010 35430246 -127169684 - L3 LINE CR1 -5 1572 1310 2041 109 4 11 chrX 35431156 35431430 -127168500 + AluSx SINE Alu 11 282 -30 2566 37 3 0 chrX 35431665 35431964 -127167966 - AluY SINE Alu -11 300 1 2241 114 7 0 chrX 35432328 35432636 -127167294 - AluSq SINE Alu -3 310 1 24 0 0 0 chrX 35433376 35433400 -127166530 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrX 35433967 35433990 -127165940 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 608 249 83 38 chrX 35434686 35434768 -127165162 - L1ME LINE L1 -439 5682 5605 2436 41 3 10 chrX 35434768 35435061 -127164869 - AluY SINE Alu -20 291 1 608 249 83 38 chrX 35435061 35435267 -127164663 - L1ME LINE L1 -516 5605 5381 2086 108 17 14 chrX 35436323 35436620 -127163310 + AluSx SINE Alu 1 298 -14 1111 109 0 0 chrX 35436696 35436843 -127163087 - AluSg/x SINE Alu -2 310 164 2138 122 0 3 chrX 35436943 35437238 -127162692 - AluSx SINE Alu -18 294 1 535 289 109 8 chrX 35437257 35437523 -127162407 - L1ME LINE L1 -1476 4670 4378 23 86 0 0 chrX 35437657 35437715 -127162215 + AT_rich Low_complexity Low_complexity 1 58 0 306 309 41 0 chrX 35438155 35438252 -127161678 + L1ME4a LINE L1 6017 6117 -4 370 154 0 0 chrX 35438328 35438399 -127161531 + MER34C LTR ERV1 1 101 -471 430 173 0 0 chrX 35438427 35438502 -127161428 - MER5C DNA MER1_type -200 124 50 1739 157 0 48 chrX 35438632 35438945 -127160985 - AluJo SINE Alu -14 298 1 1867 154 0 35 chrX 35439310 35439629 -127160301 + AluJo SINE Alu 1 308 -4 416 206 36 41 chrX 35439701 35439845 -127160085 + L1M4 LINE L1 2779 2923 -3223 1974 152 3 3 chrX 35439845 35440141 -127159789 - AluSx SINE Alu -15 297 2 416 206 36 41 chrX 35440141 35440190 -127159740 + L1M4 LINE L1 2923 2971 -3175 725 255 119 7 chrX 35440367 35440669 -127159261 + L1ME4a LINE L1 5531 5866 -255 227 189 164 8 chrX 35441033 35441155 -127158775 + L1M4 LINE L1 3085 3225 -2921 1844 189 0 0 chrX 35441155 35441457 -127158473 + AluJo SINE Alu 1 302 -10 2028 251 186 42 chrX 35441475 35441667 -127158263 + L1ME3A LINE L1 2835 2998 -3148 1767 152 14 24 chrX 35441667 35441964 -127157966 + AluJb SINE Alu 1 294 -18 2028 251 186 42 chrX 35441964 35442430 -127157500 + L1ME3A LINE L1 2998 3396 -2750 2421 84 0 0 chrX 35442430 35442728 -127157202 - AluSc SINE Alu -11 298 1 2028 251 186 42 chrX 35442728 35443890 -127156040 + L1ME3A LINE L1 3396 4918 -1228 796 236 101 19 chrX 35443875 35444142 -127155788 + L1ME3A LINE L1 5653 5941 -229 * 1071 198 8 44 chrX 35444166 35444414 -127155516 - MIR SINE MIR 0 262 24 1461 161 128 4 chrX 35445107 35445350 -127154580 - AluJo SINE Alu -38 274 2 2457 97 0 0 chrX 35445704 35446015 -127153915 + AluSq SINE Alu 1 311 -2 270 263 0 13 chrX 35447099 35447175 -127152755 - LTR67 LTR ERVL -479 78 4 276 250 57 34 chrX 35447209 35447297 -127152633 + MIR3 SINE MIR 88 177 -31 366 292 50 3 chrX 35447866 35447985 -127151945 - MIR SINE MIR -80 128 1 958 218 65 20 chrX 35449303 35449551 -127150379 - MIR SINE MIR -2 260 2 268 377 52 7 chrX 35449709 35449863 -127150067 + L2 LINE L2 2221 2381 -933 421 266 29 53 chrX 35449870 35450077 -127149853 - L1MEd LINE L1 -4893 1226 1025 1958 138 3 3 chrX 35450714 35451004 -127148926 + AluJb SINE Alu 2 291 -21 202 239 119 15 chrX 35451074 35451141 -127148789 + L2 LINE L2 2985 3058 -214 908 327 157 18 chrX 35451531 35452275 -127147655 + L2 LINE L2 1993 2840 -474 640 261 111 36 chrX 35452685 35453253 -127146677 + L1MC4a LINE L1 5521 6213 -1595 631 182 109 18 chrX 35453249 35453414 -127146516 + L1MD2 LINE L1 6164 6343 -16 * 204 59 0 59 chrX 35453420 35453454 -127146476 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 515 190 67 123 chrX 35453773 35453938 -127145992 - L1MC5 LINE L1 -65 7896 7750 2080 129 0 0 chrX 35453938 35454233 -127145697 + AluJb SINE Alu 1 295 -17 515 190 67 123 chrX 35454233 35454335 -127145595 - L1MC5 LINE L1 -211 7750 7644 2890 201 147 84 chrX 35454435 35454489 -127145441 - L1MC3 LINE L1 -11 7774 7725 1316 202 13 8 chrX 35454489 35454727 -127145203 - MER8 DNA MER2_type 0 239 1 2890 201 147 84 chrX 35454727 35455243 -127144687 - L1MC3 LINE L1 -60 7725 7243 355 169 0 31 chrX 35455243 35455308 -127144622 - MLT1F1 LTR MaLR -442 125 63 2890 201 147 84 chrX 35455308 35455894 -127144036 - L1MC3 LINE L1 -542 7243 6477 824 135 7 21 chrX 35456020 35456161 -127143769 + FLAM_C SINE Alu 2 140 -3 1537 170 4 0 chrX 35456517 35456764 -127143166 - AluJo SINE Alu 0 312 65 1690 170 18 4 chrX 35457000 35457301 -127142629 + AluJo SINE Alu 1 305 0 321 369 92 10 chrX 35457301 35457496 -127142434 + L1ME3A LINE L1 614 824 -5295 707 127 8 0 chrX 35457576 35457694 -127142236 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 289 77 0 0 chrX 35457696 35457735 -127142195 - AluSp/q SINE Alu -14 289 251 2003 71 90 11 chrX 35457754 35458022 -127141908 - AluSq SINE Alu -24 289 1 575 279 121 34 chrX 35458065 35459307 -127140623 + L1ME3A LINE L1 919 2313 -3997 * 761 225 127 62 chrX 35459289 35459402 -127140528 + L1ME3A LINE L1 3058 3162 -2967 2410 92 16 0 chrX 35459402 35459708 -127140222 + AluSx SINE Alu 1 311 -1 761 225 127 62 chrX 35459708 35460051 -127139879 + L1ME3A LINE L1 3162 3559 -2570 2097 112 0 7 chrX 35460051 35460336 -127139594 + AluSx SINE Alu 1 283 -29 761 225 127 62 chrX 35460336 35460438 -127139492 + L1ME3A LINE L1 3559 3653 -2476 1723 163 44 10 chrX 35460443 35460737 -127139193 + AluJb SINE Alu 8 311 -1 3363 175 132 53 chrX 35460895 35461725 -127138205 - Tigger3b DNA MER2_type -1798 1230 284 7695 27 0 0 chrX 35461725 35463382 -127136548 + L1PA3 LINE L1 4499 6155 0 3363 175 132 53 chrX 35463382 35463691 -127136239 - Tigger3b DNA MER2_type -2744 284 1 693 247 139 58 chrX 35463694 35464301 -127135629 + L1ME3A LINE L1 3891 4646 -1483 449 207 209 6 chrX 35464350 35464537 -127135393 + L1ME3A LINE L1 5690 5913 -232 2296 94 10 0 chrX 35464543 35464840 -127135090 + AluSx SINE Alu 1 300 -12 240 272 52 58 chrX 35464928 35465101 -127134829 + L1ME3A LINE L1 5947 6118 -35 503 251 70 45 chrX 35465170 35465413 -127134517 + L1ME4a LINE L1 5611 5859 -262 2458 77 0 0 chrX 35465567 35465864 -127134066 - AluSq SINE Alu -16 297 1 2985 140 85 23 chrX 35466328 35466857 -127133073 + MER68 LTR ERV1 1 562 0 23 0 0 0 chrX 35467179 35467202 -127132728 + AT_rich Low_complexity Low_complexity 1 23 0 47 73 0 0 chrX 35467248 35467344 -127132586 + AT_rich Low_complexity Low_complexity 1 96 0 2216 119 0 0 chrX 35467989 35468282 -127131648 - AluSx SINE Alu -19 293 1 1711 180 21 7 chrX 35468287 35468570 -127131360 - AluJb SINE Alu -25 287 1 624 198 130 36 chrX 35469369 35469622 -127130308 + L1MC5 LINE L1 7637 7913 -48 427 270 51 22 chrX 35469947 35470084 -127129846 - MIR SINE MIR -121 141 1 1987 130 13 0 chrX 35470196 35470504 -127129426 + AluSx SINE Alu 1 312 0 2216 83 55 0 chrX 35470616 35470906 -127129024 + AluSx SINE Alu 1 306 -6 700 333 116 16 chrX 35470906 35471224 -127128706 - L3 LINE CR1 -7 1570 1221 469 270 0 0 chrX 35471312 35471427 -127128503 + Charlie2b DNA MER1_type 1 115 -2747 298 268 94 31 chrX 35471579 35471706 -127128224 + Charlie2b DNA MER1_type 558 692 -2090 864 170 0 32 chrX 35471741 35471929 -127128001 + Charlie2a DNA MER1_type 1474 1655 -1207 2338 77 7 3 chrX 35471929 35472228 -127127702 + AluSg SINE Alu 1 300 -10 350 182 9 82 chrX 35472267 35472333 -127127597 + Charlie2a DNA MER1_type 2756 2812 -50 2167 143 0 0 chrX 35472333 35472640 -127127290 - AluJb SINE Alu -5 307 1 350 182 9 82 chrX 35472640 35472683 -127127247 + Charlie2a DNA MER1_type 2812 2857 -5 537 283 242 21 chrX 35472684 35473069 -127126861 - L3 LINE CR1 -392 1185 716 1608 268 59 26 chrX 35473070 35473644 -127126286 + MLT1E LTR MaLR 1 593 0 683 308 87 52 chrX 35473645 35473725 -127126205 - L3 LINE CR1 -859 718 642 734 147 0 70 chrX 35473725 35473868 -127126062 - FLAM_C SINE Alu 0 133 1 683 308 87 52 chrX 35473868 35474154 -127125776 - L3 LINE CR1 -935 642 339 2333 98 0 7 chrX 35475207 35475513 -127124417 + AluSq SINE Alu 1 304 -9 435 268 174 16 chrX 35476213 35476403 -127123527 - MIR SINE MIR -41 221 2 1319 130 0 5 chrX 35477268 35477453 -127122477 - AluSx SINE Alu -17 295 112 885 121 0 0 chrX 35477584 35477700 -127122230 - AluSx SINE Alu -197 116 1 2234 85 31 37 chrX 35478493 35478774 -127121156 - L1PB1 LINE L1 -2 6149 5869 2384 95 0 7 chrX 35478774 35479079 -127120851 + AluSx SINE Alu 1 303 -9 2234 85 31 37 chrX 35479079 35479149 -127120781 - L1PB1 LINE L1 -282 5869 5800 21 0 0 0 chrX 35479173 35479194 -127120736 + AT_rich Low_complexity Low_complexity 1 21 0 2027 157 3 0 chrX 35479623 35479923 -127120007 - AluJo SINE Alu -11 301 1 1344 180 43 7 chrX 35479939 35480244 -127119686 - MER33 DNA MER1_type 0 324 9 229 297 127 25 chrX 35480358 35480476 -127119454 - L3b LINE CR1 -97 1486 1357 237 132 0 0 chrX 35480545 35480583 -127119347 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 334 283 85 9 chrX 35480583 35480689 -127119241 - MIR SINE MIR -58 150 37 294 221 74 0 chrX 35481981 35482076 -127117854 + L1ME1 LINE L1 6061 6162 -4 1844 147 0 11 chrX 35482719 35483036 -127116894 + AluJb SINE Alu 6 319 0 493 160 8 145 chrX 35483290 35483421 -127116509 - MER81 DNA DNA -1 113 1 381 291 143 37 chrX 35483475 35483664 -127116266 + MIR SINE MIR 2 210 -52 267 334 123 39 chrX 35484038 35484370 -127115560 + L2 LINE L2 2450 2809 -505 312 317 43 43 chrX 35484585 35484746 -127115184 + L2 LINE L2 2921 3081 -191 484 255 41 66 chrX 35484928 35485124 -127114806 - MIR3 SINE MIR -2 206 16 26 30 0 0 chrX 35485359 35485392 -127114538 + AT_rich Low_complexity Low_complexity 1 33 0 621 206 65 144 chrX 35485728 35485886 -127114044 - MIR SINE MIR -6 256 128 2218 117 7 0 chrX 35485886 35486186 -127113744 + AluSx SINE Alu 1 302 -10 621 206 65 144 chrX 35486186 35486304 -127113626 - MIR SINE MIR -134 128 2 204 147 88 29 chrX 35486464 35486532 -127113398 + (CAATT)n Simple_repeat Simple_repeat 4 75 0 2195 102 0 17 chrX 35486591 35486886 -127113044 + AluSx SINE Alu 1 290 -22 622 244 57 21 chrX 35486916 35487109 -127112821 + L1M4b LINE L1 11 210 -6649 368 315 78 103 chrX 35487331 35487740 -127112190 + L1M4b LINE L1 296 694 -6165 503 248 8 0 chrX 35487897 35488026 -127111904 - L1M3d LINE L1 -4720 1171 1042 2465 42 3 3 chrX 35488098 35488404 -127111526 - L1PA4 LINE L1 -4 6151 5846 554 196 0 0 chrX 35488404 35488506 -127111424 + L1M4b LINE L1 977 1078 -5781 680 168 198 38 chrX 35488557 35488795 -127111135 + L1M4b LINE L1 1237 1512 -5347 894 262 63 19 chrX 35488795 35489112 -127110818 + LTR16B LTR ERVL 127 457 -7 233 258 11 34 chrX 35489192 35489281 -127110649 + HAL1 LINE L1 266 352 -2155 314 253 89 89 chrX 35489357 35489503 -127110427 + HAL1 LINE L1 492 637 -1870 932 256 68 38 chrX 35489755 35490255 -127109675 + HAL1 LINE L1 947 1461 -1046 724 259 61 9 chrX 35490257 35490469 -127109461 - MIR SINE MIR -35 227 5 399 238 138 63 chrX 35490485 35490900 -127109030 + HAL1 LINE L1 1579 1961 -546 2124 116 7 13 chrX 35490900 35491203 -127108727 + AluSg SINE Alu 1 301 -9 399 238 138 63 chrX 35491203 35491588 -127108342 + HAL1 LINE L1 1961 2507 0 2119 124 0 0 chrX 35491658 35491949 -127107981 + AluSx SINE Alu 1 291 -21 187 347 63 32 chrX 35494085 35494180 -127105750 + L2 LINE L2 3155 3252 -20 502 291 96 17 chrX 35494183 35494589 -127105341 + L1MC4a LINE L1 5740 6177 -1631 207 0 0 0 chrX 35494812 35494835 -127105095 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1457 201 70 39 chrX 35495143 35495434 -127104496 - MSTD LTR MaLR 0 396 88 2198 106 3 0 chrX 35495434 35495747 -127104183 - AluSq SINE Alu 0 314 1 1457 201 70 39 chrX 35495747 35495838 -127104092 - MSTD LTR MaLR -308 88 1 546 279 77 40 chrX 35495838 35496075 -127103855 + MIR SINE MIR 8 256 -6 40642 53 2 4 chrX 35496178 35502343 -127097587 + L1PA5 LINE L1 1 6153 -1 398 331 23 12 chrX 35502439 35502696 -127097234 + L1MEc LINE L1 107 366 -6030 467 284 35 22 chrX 35502914 35503459 -127096471 + L1MEc LINE L1 828 1449 -4947 1754 163 32 0 chrX 35503460 35503742 -127096188 - AluJb SINE Alu -21 291 1 539 235 154 5 chrX 35503801 35504022 -127095908 + L1MEc LINE L1 2455 2708 -3507 * 1494 244 64 13 chrX 35504016 35504640 -127095290 + L1MEc LINE L1 3123 3778 -2437 1447 199 52 52 chrX 35504650 35505108 -127094822 + L1MEc LINE L1 3884 4341 -1874 375 125 0 0 chrX 35505108 35505164 -127094766 - Tigger4(Zombi) DNA MER2_type 0 2731 2676 432 194 86 0 chrX 35505166 35505259 -127094671 - Tigger4(Zombi) DNA MER2_type -2626 105 5 505 280 48 20 chrX 35505270 35505563 -127094367 + L1MEc LINE L1 4351 4651 -1564 1300 345 17 49 chrX 35505698 35505736 -127094194 + L1MEc LINE L1 4650 4688 -1527 441 0 0 0 chrX 35505736 35505785 -127094145 + (TG)n Simple_repeat Simple_repeat 2 50 0 1300 345 17 49 chrX 35505785 35506340 -127093590 + L1MEc LINE L1 4688 5224 -991 280 186 0 0 chrX 35506438 35506497 -127093433 + L1MEc LINE L1 5197 5255 -960 3666 225 95 62 chrX 35506519 35509058 -127090872 + L1ME2 LINE L1 3258 5882 -282 610 235 220 14 chrX 35509063 35509372 -127090558 + MLT1G3 LTR MaLR 153 590 0 2399 87 3 3 chrX 35509564 35509876 -127090054 + AluSx SINE Alu 1 312 0 284 339 24 24 chrX 35509885 35510009 -127089921 - MIR SINE MIR -133 129 6 405 348 108 10 chrX 35510760 35511065 -127088865 + L2 LINE L2 1822 2156 -1158 184 370 115 37 chrX 35511159 35511402 -127088528 + L2 LINE L2 2211 2472 -842 1245 262 135 52 chrX 35511556 35512231 -127087699 + LTR41 LTR ERVL 3 733 -40 1496 123 0 0 chrX 35512240 35512476 -127087454 + L1MA2 LINE L1 6065 6300 -4 256 128 82 0 chrX 35512499 35512548 -127087382 + LTR41 LTR ERVL 726 795 0 568 285 14 7 chrX 35513398 35513542 -127086388 + MLT1H1 LTR MaLR 1 145 -410 279 197 0 61 chrX 35513593 35513659 -127086271 - MLT1A1 LTR MaLR -157 208 147 1912 132 3 17 chrX 35513716 35514027 -127085903 - AluSx SINE Alu 0 307 1 1965 171 48 11 chrX 35514524 35514876 -127085054 - MLT1A1 LTR MaLR 0 365 1 460 304 113 10 chrX 35515238 35515432 -127084498 - MIR SINE MIR -15 247 34 2801 202 63 57 chrX 35516419 35516947 -127082983 - L1ME3A LINE L1 -41 6129 5606 540 0 0 0 chrX 35516947 35517007 -127082923 + (TA)n Simple_repeat Simple_repeat 2 61 0 2801 202 63 57 chrX 35517007 35517250 -127082680 - L1ME3A LINE L1 -564 5606 5350 2095 140 3 0 chrX 35517250 35517550 -127082380 - AluJb SINE Alu -11 301 1 2801 202 63 57 chrX 35517550 35517580 -127082350 - L1ME3A LINE L1 -820 5350 5322 2565 49 7 0 chrX 35517789 35518095 -127081835 + AluY SINE Alu 1 308 -3 304 224 75 93 chrX 35518306 35518413 -127081517 - L2 LINE L2 -1 3312 3208 369 301 121 34 chrX 35518537 35518743 -127081187 + MIR SINE MIR 37 260 -2 2261 88 0 7 chrX 35518927 35519239 -127080691 + AluSx SINE Alu 1 310 0 1162 162 81 65 chrX 35519635 35519729 -127080201 - Charlie2 DNA MER1_type -681 2181 2090 2831 165 51 7 chrX 35519729 35519809 -127080121 + L1MB7 LINE L1 5610 5685 -499 2874 219 35 9 chrX 35519809 35520445 -127079485 + MER82 DNA MER2_type 1 652 -1 2831 165 51 7 chrX 35520445 35520915 -127079015 + L1MB7 LINE L1 5685 6184 0 1162 162 81 65 chrX 35520915 35521007 -127078923 - Charlie2 DNA MER1_type -772 2090 2001 1977 124 0 11 chrX 35521007 35521289 -127078641 - AluJb SINE Alu -22 290 12 1162 162 81 65 chrX 35521289 35521422 -127078508 - Charlie2 DNA MER1_type -861 2001 1856 882 237 32 77 chrX 35521413 35521751 -127078179 - Charlie2 DNA MER1_type -2532 330 8 * 850 156 46 110 chrX 35521798 35522016 -127077914 + MER92B LTR ERV1 433 636 0 1028 94 0 0 chrX 35522475 35522602 -127077328 - AluSq/x SINE Alu -185 127 1 27 49 0 0 chrX 35523864 35523905 -127076025 + AT_rich Low_complexity Low_complexity 1 41 0 4337 194 28 46 chrX 35524409 35525288 -127074642 - L1MD2 LINE L1 -13 6346 5489 802 159 0 0 chrX 35525288 35525414 -127074516 - FLAM_C SINE Alu -7 126 1 4337 194 28 46 chrX 35525414 35525618 -127074312 - L1MD2 LINE L1 -870 5489 5283 3290 252 24 23 chrX 35525644 35525735 -127074195 - L1MD2 LINE L1 -1031 5115 5026 2228 81 3 17 chrX 35525735 35526031 -127073899 + AluSx SINE Alu 1 292 -20 3290 252 24 23 chrX 35526031 35526996 -127072934 - L1MD2 LINE L1 -1120 5026 4058 3752 243 22 17 chrX 35527022 35528133 -127071797 - L1ME3A LINE L1 -1175 4971 3814 11804 219 29 20 chrX 35528134 35528760 -127071170 - L1MB7 LINE L1 -358 6324 5705 1924 139 6 43 chrX 35528760 35529083 -127070847 - AluSx SINE Alu -1 311 1 11804 219 29 20 chrX 35529083 35529551 -127070379 - L1MB7 LINE L1 -977 5705 5243 1988 122 30 7 chrX 35529551 35529847 -127070083 + AluSq SINE Alu 1 303 -10 11804 219 29 20 chrX 35529847 35530791 -127069139 - L1MB7 LINE L1 -1439 5243 4309 2728 186 41 9 chrX 35530791 35531373 -127068557 - L1MB8 LINE L1 -11 6167 5567 11804 219 29 20 chrX 35531373 35533117 -127066813 - L1MB7 LINE L1 -2373 4309 2498 3313 91 0 0 chrX 35533150 35533592 -127066338 + L1MA3 LINE L1 5459 5900 -405 3272 106 29 47 chrX 35533692 35534250 -127065680 + L1MA2 LINE L1 5757 6304 0 2548 215 62 31 chrX 35534265 35535749 -127064181 - L1MB7 LINE L1 -4628 2018 383 2615 139 21 2 chrX 35535749 35536173 -127063757 + MSTB1 LTR MaLR 1 432 0 2548 215 62 31 chrX 35536173 35536569 -127063361 - L1MB7 LINE L1 -6263 383 1 1895 148 7 7 chrX 35537402 35537692 -127062238 + AluJb SINE Alu 1 290 -22 204 135 58 39 chrX 35537982 35538034 -127061896 + A-rich Low_complexity Low_complexity 2 54 0 23 86 0 0 chrX 35538334 35538392 -127061538 + AT_rich Low_complexity Low_complexity 1 58 0 28 0 0 0 chrX 35539180 35539208 -127060722 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 35539492 35539513 -127060417 + AT_rich Low_complexity Low_complexity 1 21 0 242 275 28 49 chrX 35541111 35541253 -127058677 + L2 LINE L2 2443 2581 -733 287 185 60 26 chrX 35541348 35541487 -127058443 + L1 LINE L1 5211 5358 -788 21 0 0 0 chrX 35541710 35541731 -127058199 + GC_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chrX 35541731 35541780 -127058150 + (CA)n Simple_repeat Simple_repeat 1 49 0 1345 261 79 30 chrX 35543705 35544146 -127055784 + HAL1 LINE L1 22 484 -2023 1436 64 0 0 chrX 35544147 35544320 -127055610 + AluY SINE Alu 127 299 -12 1854 234 119 34 chrX 35544329 35544661 -127055269 + HAL1 LINE L1 475 777 -1730 1189 163 4 44 chrX 35544661 35544888 -127055042 - MER20 DNA MER1_type -1 218 1 1854 234 119 34 chrX 35544888 35545760 -127054170 + HAL1 LINE L1 777 1877 -630 23 54 0 0 chrX 35546486 35546523 -127053407 + AT_rich Low_complexity Low_complexity 1 37 0 259 274 34 20 chrX 35546779 35546821 -127053109 + (TA)n Simple_repeat Simple_repeat 1 41 -107 3602 187 8 5 chrX 35546821 35547472 -127052458 - MER82 DNA MER2_type 0 653 1 259 274 34 20 chrX 35547472 35547575 -127052355 + (TA)n Simple_repeat Simple_repeat 41 148 0 221 222 0 0 chrX 35547584 35547629 -127052301 + L2 LINE L2 3263 3307 -6 21 0 0 0 chrX 35547908 35547929 -127052001 + AT_rich Low_complexity Low_complexity 1 21 0 285 128 0 0 chrX 35548738 35548785 -127051145 + (TG)n Simple_repeat Simple_repeat 1 47 0 682 109 41 24 chrX 35549224 35549527 -127050403 + (TA)n Simple_repeat Simple_repeat 1 308 0 201 293 51 83 chrX 35549604 35549761 -127050169 - L2 LINE L2 -221 3051 2900 2350 110 0 0 chrX 35549765 35550073 -127049857 + AluSx SINE Alu 1 308 -4 458 317 72 24 chrX 35550596 35550804 -127049126 - MIR SINE MIR -37 225 8 29 28 0 0 chrX 35551658 35551694 -127048236 + AT_rich Low_complexity Low_complexity 1 36 0 436 229 57 41 chrX 35552806 35552928 -127047002 + L2 LINE L2 2401 2524 -790 1918 221 32 35 chrX 35552928 35553420 -127046510 - L1MDb LINE L1 -5260 1283 793 1018 230 39 57 chrX 35553797 35554128 -127045802 - L1MDb LINE L1 -6199 341 17 189 0 0 0 chrX 35554466 35554487 -127045443 + (CTCA)n Simple_repeat Simple_repeat 4 24 0 269 345 76 34 chrX 35554708 35554827 -127045103 + L2 LINE L2 3149 3272 0 382 251 108 64 chrX 35556109 35556312 -127043618 + MIR SINE MIR 21 232 -30 2071 150 0 0 chrX 35557037 35557343 -127042587 + AluSx SINE Alu 1 306 -6 575 250 126 57 chrX 35557343 35558029 -127041901 + L1MDa LINE L1 1334 2108 -4516 1597 194 137 27 chrX 35558370 35558771 -127041159 - MLT1E3 LTR MaLR 0 624 180 701 274 114 20 chrX 35558740 35559134 -127040796 + MER113 DNA MER1_type? 90 520 -1 * 1216 179 13 18 chrX 35559511 35559735 -127040195 + MER58A DNA MER1_type 1 223 -1 2120 108 9 9 chrX 35560038 35560380 -127039550 - L1MC3 LINE L1 -1 7784 7443 207 0 0 0 chrX 35560791 35560814 -127039116 + (A)n Simple_repeat Simple_repeat 1 23 0 499 62 0 167 chrX 35561253 35561292 -127038638 + MADE1 DNA Mariner 1 16 -64 2210 102 3 7 chrX 35561292 35561597 -127038333 - AluSx SINE Alu -8 304 1 499 62 0 167 chrX 35561597 35561653 -127038277 + MADE1 DNA Mariner 16 80 0 2684 81 60 0 chrX 35561683 35562066 -127037864 - L1PA10 LINE L1 0 6168 5763 896 253 37 17 chrX 35563684 35563925 -127036005 - MIR SINE MIR -11 251 6 394 264 74 20 chrX 35564466 35564614 -127035316 + MIR3 SINE MIR 38 193 -15 647 135 9 0 chrX 35565360 35565471 -127034459 + L1MB4 LINE L1 6067 6178 -2 1766 122 52 18 chrX 35565685 35565971 -127033959 - MER65A LTR ERV1 -33 412 117 21 0 0 0 chrX 35565972 35565993 -127033937 + AT_rich Low_complexity Low_complexity 1 21 0 438 114 23 34 chrX 35566223 35566311 -127033619 + L1PB1 LINE L1 5958 6044 -107 1667 151 45 39 chrX 35566749 35567086 -127032844 - MER44D DNA MER2_type 0 609 1 724 193 67 13 chrX 35567733 35567883 -127032047 + L1ME3A LINE L1 6008 6165 -5 295 281 142 85 chrX 35568467 35568727 -127031203 + L2 LINE L2 2825 3099 -173 502 284 32 21 chrX 35568916 35569106 -127030824 + L2 LINE L2 3119 3310 -3 842 285 27 19 chrX 35569354 35569610 -127030320 + MIR SINE MIR 5 262 0 982 254 73 0 chrX 35571381 35571613 -127028317 - ERVL LTR ERVL -4141 1623 1375 747 264 100 55 chrX 35572013 35572502 -127027428 + MLT1J LTR MaLR 1 511 0 197 356 19 19 chrX 35572925 35573029 -127026901 + MIR SINE MIR 77 180 -82 468 0 0 0 chrX 35574799 35574851 -127025079 + (CA)n Simple_repeat Simple_repeat 1 52 0 2138 69 34 0 chrX 35575851 35576130 -127023800 - L1PB1 LINE L1 -69 6082 5791 231 114 0 0 chrX 35576130 35576165 -127023765 + (TA)n Simple_repeat Simple_repeat 2 36 0 2138 69 34 0 chrX 35576165 35576176 -127023754 - L1PB1 LINE L1 -360 5791 5782 205 176 0 0 chrX 35576176 35576210 -127023720 + (TATATG)n Simple_repeat Simple_repeat 1 34 0 369 281 0 0 chrX 35576210 35576299 -127023631 + L1MC4 LINE L1 6615 6703 -1339 327 319 0 0 chrX 35576230 35576321 -127023609 - L1MC4 LINE L1 -1338 6704 6614 * 1518 53 11 7 chrX 35576350 35576559 -127023371 - L1M1 LINE L1 -370 5781 5595 2141 76 16 6 chrX 35576697 35577012 -127022918 - L1P5 LINE L1 -535 5616 5299 339 85 0 0 chrX 35577714 35577761 -127022169 + (TG)n Simple_repeat Simple_repeat 2 48 0 2026 140 7 7 chrX 35578396 35578696 -127021234 - AluSx SINE Alu -12 300 1 23 0 0 0 chrX 35579216 35579239 -127020691 + AT_rich Low_complexity Low_complexity 1 23 0 1988 139 3 13 chrX 35579414 35579715 -127020215 + AluJb SINE Alu 1 298 -14 21 0 0 0 chrX 35579727 35579748 -127020182 + AT_rich Low_complexity Low_complexity 1 21 0 2076 126 7 7 chrX 35579840 35580141 -127019789 - AluSx SINE Alu -11 301 1 528 260 33 28 chrX 35580154 35580335 -127019595 + L1ME LINE L1 5551 5732 -389 255 305 73 0 chrX 35580362 35580444 -127019486 - L2 LINE L2 -48 3224 3137 1170 269 52 42 chrX 35580788 35581246 -127018684 + L1M4 LINE L1 405 867 -5675 2197 206 48 11 chrX 35581313 35581872 -127018058 + L1M4 LINE L1 880 1459 -5083 282 289 135 10 chrX 35581963 35582067 -127017863 - L2 LINE L2 0 3313 3197 207 0 0 0 chrX 35582104 35582127 -127017803 + (A)n Simple_repeat Simple_repeat 1 23 0 276 350 100 17 chrX 35582879 35582999 -127016931 - L2 LINE L2 -18 3254 3125 1005 261 122 88 chrX 35583036 35584075 -127015855 + HAL1 LINE L1 2 1075 -1432 2765 160 60 30 chrX 35584091 35584163 -127015767 - L1 LINE L1 -1753 5353 5285 1945 93 45 0 chrX 35584163 35584453 -127015477 - L1MA3 LINE L1 0 6305 6003 2765 160 60 30 chrX 35584453 35584981 -127014949 - L1 LINE L1 -1821 5285 4735 409 276 16 24 chrX 35585110 35585237 -127014693 - MIR3 SINE MIR -1 207 82 6484 233 65 37 chrX 35585344 35588248 -127011682 - L1 LINE L1 -2368 4738 1916 2279 116 0 0 chrX 35588248 35588549 -127011381 - AluSx SINE Alu -11 301 1 6484 233 65 37 chrX 35588549 35588704 -127011226 - L1 LINE L1 -5190 1916 1767 1766 135 45 58 chrX 35588704 35589016 -127010914 + AluJb SINE Alu 1 308 -4 6484 233 65 37 chrX 35589016 35589638 -127010292 - L1 LINE L1 -5339 1767 1242 494 215 39 23 chrX 35589662 35589708 -127010222 + HAL1 LINE L1 1601 1645 -862 2205 148 132 20 chrX 35589708 35590162 -127009768 - MLT1D LTR MaLR 0 505 1 494 215 39 23 chrX 35590162 35590245 -127009685 + HAL1 LINE L1 1645 1732 -775 226 247 43 54 chrX 35591010 35591103 -127008827 + MIR SINE MIR 129 220 -42 807 171 8 0 chrX 35591234 35591363 -127008567 + MER3 DNA MER1_type 1 130 -79 1866 172 11 16 chrX 35591363 35591740 -127008190 - L1MB7 LINE L1 0 6184 5810 1153 211 93 6 chrX 35591740 35592105 -127007825 + L1M4 LINE L1 4180 4576 -1570 2763 137 67 2 chrX 35592109 35592570 -127007360 - L1PA15 LINE L1 0 6165 5675 2754 157 25 0 chrX 35592579 35593049 -127006881 - L1MB7 LINE L1 -361 5817 5336 333 95 143 0 chrX 35593050 35593113 -127006817 + MER3 DNA MER1_type 126 197 -12 254 318 64 9 chrX 35593254 35593364 -127006566 - MIR SINE MIR -47 215 100 408 298 29 0 chrX 35593695 35593799 -127006131 - L2 LINE L2 -8 3305 3199 2260 121 0 29 chrX 35595251 35595598 -127004332 - MER1B DNA MER1_type 0 337 1 1759 94 23 43 chrX 35595618 35595874 -127004056 + AluSx SINE Alu 29 279 -33 198 0 0 0 chrX 35595874 35595896 -127004034 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 985 223 37 0 chrX 35596317 35596532 -127003398 - MER58A DNA MER1_type -1 223 1 960 178 32 11 chrX 35596548 35596733 -127003197 - MER5A DNA MER1_type 0 189 1 1994 120 27 7 chrX 35597106 35597407 -127002523 - AluSx SINE Alu -5 307 1 2247 113 0 0 chrX 35597691 35597982 -127001948 + AluSx SINE Alu 3 293 -19 268 241 0 81 chrX 35598041 35598128 -127001802 - MIR SINE MIR -65 197 118 26 0 0 0 chrX 35598867 35598893 -127001037 + AT_rich Low_complexity Low_complexity 1 26 0 1689 51 0 14 chrX 35599627 35599844 -127000086 - L1PA7 LINE L1 0 6154 5941 857 30 0 0 chrX 35599844 35599945 -126999985 + L1PA7 LINE L1 5849 5949 -223 371 145 81 0 chrX 35599963 35600025 -126999905 - AluJ/FRAM SINE Alu -13 289 223 2189 137 0 0 chrX 35600043 35600356 -126999574 - AluSq SINE Alu 0 313 1 719 164 0 0 chrX 35600403 35600519 -126999411 + FLAM_C SINE Alu 1 116 -27 230 73 24 0 chrX 35600539 35600580 -126999350 + (TA)n Simple_repeat Simple_repeat 1 42 0 240 236 73 0 chrX 35600679 35600734 -126999196 - MIR SINE MIR -60 148 90 1023 24 0 0 chrX 35600984 35601107 -126998823 + L1PA4 LINE L1 6030 6152 -3 613 241 28 0 chrX 35601151 35601292 -126998638 - MIR SINE MIR -47 215 71 2095 101 27 20 chrX 35603330 35603457 -126996473 + AluSx SINE Alu 1 126 -186 1839 80 42 49 chrX 35603457 35603743 -126996187 + AluY SINE Alu 1 284 -27 294 29 0 0 chrX 35603743 35603778 -126996152 + (CA)n Simple_repeat Simple_repeat 2 36 0 2095 101 27 20 chrX 35603778 35603946 -126995984 + AluSx SINE Alu 125 299 -13 324 191 43 61 chrX 35604970 35605063 -126994867 + MIR SINE MIR 81 176 -32 608 292 6 11 chrX 35606570 35606748 -126993182 - MER5B DNA MER1_type 0 178 2 222 375 125 0 chrX 35606843 35606979 -126992951 - L2 LINE L2 -4 3268 3116 411 225 112 0 chrX 35607008 35607097 -126992833 - U6 snRNA snRNA -2 105 7 231 250 0 0 chrX 35607798 35607846 -126992084 + (TGGG)n Simple_repeat Simple_repeat 2 49 0 622 133 0 0 chrX 35608799 35608897 -126991033 + MER3 DNA MER1_type 72 122 -87 1964 113 36 36 chrX 35608906 35609296 -126990634 + MER3 DNA MER1_type 2235 2624 0 207 0 0 0 chrX 35609622 35609645 -126990285 + (A)n Simple_repeat Simple_repeat 1 23 0 54 40 0 0 chrX 35611010 35611085 -126988845 + GC_rich Low_complexity Low_complexity 1 75 0 24 32 0 0 chrX 35612561 35612592 -126987338 + AT_rich Low_complexity Low_complexity 1 31 0 494 263 104 109 chrX 35613729 35614132 -126985798 - MLT1L LTR MaLR 0 615 111 2049 93 0 0 chrX 35614208 35614466 -126985464 - AluSq SINE Alu -55 258 1 218 403 67 49 chrX 35615057 35615462 -126984468 - L2 LINE L2 -49 3223 2812 783 228 100 52 chrX 35615844 35616147 -126983783 + LTR16A1 LTR ERVL 157 457 0 373 248 0 80 chrX 35616167 35616280 -126983650 + MER5A DNA MER1_type 31 134 -55 1033 71 0 0 chrX 35616281 35616408 -126983522 - AluSp/q SINE Alu -14 299 173 231 300 17 0 chrX 35616410 35616470 -126983460 + MER5A DNA MER1_type 129 189 0 2108 143 64 20 chrX 35616684 35617042 -126982888 + L1PB4 LINE L1 5781 6154 -2 754 287 107 87 chrX 35617135 35617685 -126982245 - MLT1K LTR MaLR -7 581 21 308 264 0 42 chrX 35617963 35618035 -126981895 + L2 LINE L2 3245 3313 0 261 286 48 0 chrX 35618095 35618179 -126981751 + L2 LINE L2 3226 3313 0 690 274 35 20 chrX 35619258 35619455 -126980475 - MIR SINE MIR -12 250 51 195 309 0 48 chrX 35619611 35619695 -126980235 - MIR SINE MIR 0 262 183 * 422 336 98 0 chrX 35619686 35619808 -126980122 - L2 LINE L2 -6 3266 3133 2295 146 55 49 chrX 35619812 35621013 -126978917 + L1MB2 LINE L1 4826 6120 -51 1895 183 0 3 chrX 35621013 35621325 -126978605 + AluJo SINE Alu 1 311 -1 2295 146 55 49 chrX 35621325 35621375 -126978555 + L1MB2 LINE L1 6120 6168 -3 24 32 0 0 chrX 35621376 35621407 -126978523 + AT_rich Low_complexity Low_complexity 1 31 0 431 337 45 6 chrX 35621410 35621588 -126978342 - MIR SINE MIR -66 196 12 2338 79 30 3 chrX 35622218 35622521 -126977409 + AluSq SINE Alu 3 313 0 2071 121 16 3 chrX 35623199 35623505 -126976425 + AluSx SINE Alu 1 310 -2 620 336 143 22 chrX 35624236 35624791 -126975139 - L2 LINE L2 -20 3252 2627 1305 264 109 17 chrX 35624834 35625311 -126974619 + LTR33 LTR ERVL 1 521 0 222 327 47 0 chrX 35625979 35626086 -126973844 - L3b LINE CR1 -225 1358 1247 1998 160 72 62 chrX 35626137 35626637 -126973293 - MLT1D LTR MaLR 0 505 1 216 260 20 0 chrX 35626773 35626823 -126973107 - L2 LINE L2 -36 3236 3186 764 214 48 7 chrX 35626987 35627132 -126972798 - FRAM SINE Alu -30 146 1 916 211 60 0 chrX 35627512 35627678 -126972252 - MER45A DNA AcHobo -2 176 1 2316 103 0 0 chrX 35627910 35628221 -126971709 + AluY SINE Alu 1 311 0 2502 60 3 0 chrX 35628675 35628974 -126970956 - AluY SINE Alu -11 300 1 749 264 143 18 chrX 35629108 35629437 -126970493 + LTR16A LTR ERVL 1 370 -80 2237 123 80 3 chrX 35630504 35630877 -126969053 + L1MC2 LINE L1 5943 6344 0 481 225 94 31 chrX 35631202 35631362 -126968568 + MLT1K LTR MaLR 400 569 -19 1121 78 0 46 chrX 35631362 35631515 -126968415 + L1PA10 LINE L1 6022 6167 -1 499 276 167 19 chrX 35631568 35631778 -126968152 - MIR SINE MIR -13 249 9 281 327 0 42 chrX 35631878 35631912 -126968018 + MIR SINE MIR 47 81 -127 367 231 13 0 chrX 35631912 35631990 -126967940 + MER116 DNA Mariner 1 79 -1 281 327 0 42 chrX 35631990 35632088 -126967842 + MIR SINE MIR 81 172 -36 1012 309 91 9 chrX 35632100 35632450 -126967480 - LTR16C LTR ERVL -24 467 89 1130 289 25 33 chrX 35632701 35633185 -126966745 - L1MC4a LINE L1 -1823 5985 5506 1232 299 48 8 chrX 35633541 35633915 -126966015 + LTR16C LTR ERVL 102 490 -1 276 30 0 0 chrX 35636142 35636175 -126963755 + (TG)n Simple_repeat Simple_repeat 2 34 0 947 261 33 45 chrX 35636225 35636467 -126963463 - L1MC4a LINE L1 -1832 5976 5738 2212 123 0 7 chrX 35636467 35636775 -126963155 - AluSx SINE Alu -6 306 1 947 261 33 45 chrX 35636775 35636865 -126963065 - L1MC4a LINE L1 -2070 5738 5648 272 139 0 0 chrX 35636984 35637027 -126962903 - MLT1E3 LTR MaLR 0 624 582 2190 101 0 36 chrX 35637095 35637403 -126962527 + AluSp SINE Alu 1 297 -16 412 382 44 0 chrX 35637653 35637881 -126962049 + MIR SINE MIR 19 256 -6 1977 194 138 79 chrX 35637991 35638609 -126961321 + MLT1E1 LTR MaLR 1 654 0 29 70 0 0 chrX 35639419 35639476 -126960454 + AT_rich Low_complexity Low_complexity 1 57 0 313 214 13 138 chrX 35641144 35641303 -126958627 + MIR SINE MIR 62 200 -62 548 317 103 24 chrX 35642022 35642363 -126957567 - L2 LINE L2 0 3313 2946 2595 87 22 33 chrX 35642485 35642853 -126957077 - THE1B LTR MaLR 0 364 1 397 319 64 38 chrX 35643173 35643439 -126956491 - L2 LINE L2 -685 2629 2357 1888 216 75 24 chrX 35643564 35644072 -126955858 + L2 LINE L2 2285 2818 -496 359 297 34 5 chrX 35644074 35644278 -126955652 - LTR16A LTR ERVL -260 204 1 742 170 254 0 chrX 35646052 35646217 -126953713 + MIR SINE MIR 2 208 -54 198 256 0 0 chrX 35646314 35646357 -126953573 + MIR SINE MIR 219 261 -1 1378 207 78 81 chrX 35646570 35647092 -126952838 + MER113 DNA MER1_type? 1 521 0 490 270 103 25 chrX 35647196 35647400 -126952530 + MIR SINE MIR 32 251 -11 234 311 115 22 chrX 35647409 35647595 -126952335 - L1M3 LINE L1 -243 5925 5724 202 188 0 94 chrX 35647597 35647661 -126952269 - MIR SINE MIR -67 141 84 240 298 35 0 chrX 35648081 35648138 -126951792 + L2 LINE L2 3213 3271 -1 250 301 94 62 chrX 35648889 35649145 -126950785 - MLT1H LTR MaLR -142 407 144 598 277 20 29 chrX 35649229 35649409 -126950521 + MIR SINE MIR 74 251 -11 2226 113 0 0 chrX 35649841 35650142 -126949788 - AluSx SINE Alu -11 301 1 229 381 51 8 chrX 35650155 35650273 -126949657 - MIR3 SINE MIR -49 159 37 2547 37 7 0 chrX 35650410 35650708 -126949222 - AluY SINE Alu -11 300 1 443 301 23 8 chrX 35650942 35651075 -126948855 + MIR3 SINE MIR 3 137 -71 268 267 80 0 chrX 35651105 35651180 -126948750 + L2 LINE L2 3193 3273 -40 306 234 16 0 chrX 35651498 35651562 -126948368 + L2 LINE L2 3249 3313 0 4730 164 55 19 chrX 35651981 35652362 -126947568 + L1MB4 LINE L1 4845 5211 -969 1531 230 18 44 chrX 35652362 35652678 -126947252 + MLT1A2 LTR MaLR 1 307 -67 1848 146 28 7 chrX 35652678 35652966 -126946964 - AluJb SINE Alu -18 294 1 1531 230 18 44 chrX 35652966 35653032 -126946898 + MLT1A2 LTR MaLR 307 373 -1 4730 164 55 19 chrX 35653032 35653936 -126945994 + L1MB4 LINE L1 5211 6179 -1 2012 206 73 55 chrX 35653976 35654535 -126945395 + MLT1E2 LTR MaLR 1 569 -57 2079 201 67 62 chrX 35654669 35655257 -126944673 + MLT1G LTR MaLR 1 556 -34 2259 188 140 19 chrX 35655257 35655296 -126944634 - MLT2B1 LTR ERVL 0 520 487 195 42 0 0 chrX 35655296 35655320 -126944610 + (TG)n Simple_repeat Simple_repeat 1 24 0 2259 188 140 19 chrX 35655320 35655744 -126944186 - MLT2B1 LTR ERVL -33 487 1 2079 201 67 62 chrX 35655744 35655780 -126944150 + MLT1G LTR MaLR 556 590 0 2382 83 0 7 chrX 35657806 35658106 -126941824 - AluSg SINE Alu -12 298 1 350 200 92 85 chrX 35658294 35658424 -126941506 - LTR50 LTR ERVL -305 490 360 1247 254 121 0 chrX 35658431 35658746 -126941184 + LTR16C LTR ERVL 85 437 -54 2919 179 30 9 chrX 35658789 35659348 -126940582 + L1PBa LINE L1 1 571 -6292 595 113 72 0 chrX 35659351 35659448 -126940482 + L1PBa LINE L1 603 706 -6157 372 156 0 16 chrX 35659448 35659509 -126940421 + LTR16C LTR ERVL 424 483 -8 292 109 65 0 chrX 35659509 35659555 -126940375 - LTR50 LTR ERVL -1 794 746 714 130 0 0 chrX 35659562 35659654 -126940276 - AluSx SINE Alu -27 283 192 1072 128 0 0 chrX 35659655 35659796 -126940134 - AluSx SINE Alu -171 141 1 241 89 67 0 chrX 35659796 35659841 -126940089 - LTR50 LTR ERVL -36 759 712 2241 161 77 23 chrX 35659865 35660306 -126939624 - MLT1C LTR MaLR 0 467 3 2373 213 104 26 chrX 35660312 35660936 -126938994 - LTR50 LTR ERVL -122 673 1 790 296 47 19 chrX 35661082 35661399 -126938531 - MARNA DNA Mariner -13 573 248 4653 88 0 3 chrX 35662422 35663059 -126936871 + L1PA13 LINE L1 5529 6163 0 609 319 115 35 chrX 35663326 35663806 -126936124 + HAL1b LINE L1 91 608 -740 301 265 39 34 chrX 35664180 35664422 -126935508 + L1MEc LINE L1 2141 2402 -3756 25 31 0 0 chrX 35664581 35664613 -126935317 + AT_rich Low_complexity Low_complexity 1 32 0 514 273 0 9 chrX 35664720 35664830 -126935100 - L2 LINE L2 -43 3229 3121 1560 346 44 20 chrX 35664880 35665623 -126934307 - L2 LINE L2 -403 2911 2151 1782 248 82 90 chrX 35666609 35667356 -126932574 - L1MC4 LINE L1 -32 8010 7259 1327 59 0 0 chrX 35667356 35667525 -126932405 + L1PA8 LINE L1 6001 6169 -3 1782 248 82 90 chrX 35667525 35667633 -126932297 - L1MC4 LINE L1 -783 7259 7152 2164 161 77 17 chrX 35667633 35668036 -126931894 - MSTA LTR MaLR -1 427 1 1782 248 82 90 chrX 35668036 35668227 -126931703 - L1MC4 LINE L1 -890 7152 6971 1561 250 65 26 chrX 35668666 35669158 -126930772 - MLT1J LTR MaLR 0 511 1 296 229 0 0 chrX 35670675 35670736 -126929194 - L2 LINE L2 -9 3263 3203 308 238 4 0 chrX 35670809 35670876 -126929054 - MER5A DNA MER1_type 0 189 110 243 378 30 7 chrX 35671035 35671170 -126928760 - L2 LINE L2 -455 2859 2722 * 1081 286 117 3 chrX 35671156 35671414 -126928516 - L2 LINE L2 -308 3005 2686 180 0 0 0 chrX 35671414 35671434 -126928496 + (ATATG)n Simple_repeat Simple_repeat 5 24 0 1081 286 117 3 chrX 35671434 35671562 -126928368 - L2 LINE L2 -627 2686 2574 3244 209 24 16 chrX 35671562 35672267 -126927663 - L1ME1 LINE L1 -67 6099 5389 448 189 44 0 chrX 35672267 35672357 -126927573 - L2 LINE L2 -787 2527 2434 27 0 0 0 chrX 35673451 35673478 -126926452 + AT_rich Low_complexity Low_complexity 1 27 0 555 50 0 12 chrX 35673479 35673559 -126926371 - L1MA1 LINE L1 -2 6300 6222 378 0 0 0 chrX 35673674 35673716 -126926214 + (CA)n Simple_repeat Simple_repeat 1 42 0 4543 123 25 0 chrX 35673747 35674478 -126925452 + L1MA8 LINE L1 3968 4716 -1430 2346 75 0 0 chrX 35674478 35674783 -126925147 + AluSg SINE Alu 1 305 0 5763 138 34 14 chrX 35674783 35675943 -126923987 + L1MA8 LINE L1 5106 6287 -4 327 257 127 87 chrX 35676029 35676282 -126923648 - L1MC/D LINE L1 -1983 6620 6358 * 2669 255 74 17 chrX 35676280 35677404 -126922526 - L1MCb LINE L1 -2782 4159 3010 5534 137 17 2 chrX 35677429 35678328 -126921602 - L1MA5 LINE L1 -2 6298 5387 6332 141 19 4 chrX 35678357 35679829 -126920101 + L1MA4 LINE L1 4866 6299 -1 318 233 128 11 chrX 35679841 35680021 -126919909 - L1MCb LINE L1 -4103 3019 2819 4854 234 127 17 chrX 35680100 35681645 -126918285 + L1MB8 LINE L1 121 1827 -5028 3620 227 25 7 chrX 35681650 35682662 -126917268 + L1MB8 LINE L1 2963 3992 -2965 1225 215 155 3 chrX 35682676 35683043 -126916887 + L1MB8 LINE L1 5661 6083 -874 605 176 0 0 chrX 35683051 35683142 -126916788 - Tigger7 DNA MER2_type -7 2480 2390 1221 178 99 8 chrX 35683147 35683389 -126916541 - Tigger7 DNA MER2_type -469 264 1 4099 188 59 11 chrX 35683389 35684258 -126915672 + L1MB8 LINE L1 6080 6989 0 1838 156 40 0 chrX 35684370 35684646 -126915284 - AluJo SINE Alu -23 289 3 606 293 153 20 chrX 35684766 35685466 -126914464 - L1MCb LINE L1 -4428 2513 1721 21 57 0 0 chrX 35685481 35685516 -126914414 + AT_rich Low_complexity Low_complexity 1 35 0 248 233 41 0 chrX 35685577 35685671 -126914259 - L1MCb LINE L1 -4955 1468 1367 356 316 39 64 chrX 35686231 35686513 -126913417 - L1MCb LINE L1 -6112 1010 736 296 180 33 131 chrX 35687505 35687566 -126912364 + MER103 DNA DNA 10 55 -111 2202 120 0 3 chrX 35687566 35687866 -126912064 - AluSp SINE Alu -13 300 2 296 180 33 131 chrX 35687866 35687926 -126912004 + MER103 DNA DNA 55 119 -47 597 261 116 5 chrX 35688054 35688261 -126911669 - LTR16C LTR ERVL 0 491 262 1586 166 8 8 chrX 35689399 35689658 -126910272 - AluJo SINE Alu -53 259 1 2893 128 47 2 chrX 35690000 35690494 -126909436 - L1MA9 LINE L1 0 6312 5797 32 0 0 0 chrX 35690689 35690721 -126909209 + AT_rich Low_complexity Low_complexity 1 32 0 237 65 0 0 chrX 35690757 35690788 -126909142 + (A)n Simple_repeat Simple_repeat 1 31 0 2092 117 0 17 chrX 35690788 35691088 -126908842 + AluSc SINE Alu 1 295 -14 180 200 0 50 chrX 35691142 35691182 -126908748 - L2 LINE L2 -254 3059 3022 4715 195 4 3 chrX 35691182 35692135 -126907795 + L1PA16 LINE L1 4232 5185 -961 42552 38 21 1 chrX 35692141 35698186 -126901744 + L1PA3 LINE L1 1 6170 0 821 190 6 0 chrX 35698186 35698360 -126901570 + L1 LINE L1 5176 5350 -796 6896 31 0 1 chrX 35698362 35699174 -126900756 - L1PA5 LINE L1 0 6154 5344 5478 108 11 11 chrX 35699174 35700000 -126899930 + L1PA16 LINE L1 5337 6162 -4 410 302 125 16 chrX 35700533 35700725 -126899205 + L2 LINE L2 2509 2721 -593 339 314 62 21 chrX 35701740 35701934 -126897996 - L2 LINE L2 0 3313 3112 680 280 135 5 chrX 35702243 35702450 -126897480 - MLT1I LTR MaLR -62 347 114 555 245 148 14 chrX 35703051 35703267 -126896663 + L1ME3A LINE L1 3588 3832 -2314 * 925 276 66 19 chrX 35703247 35703806 -126896124 + L1ME3A LINE L1 4805 5397 -773 1353 202 99 72 chrX 35703806 35704251 -126895679 - LTR16A1 LTR ERVL 0 457 1 925 276 66 19 chrX 35704251 35704300 -126895630 + L1ME3A LINE L1 5397 5442 -728 2171 96 0 17 chrX 35704315 35704617 -126895313 + AluSc SINE Alu 1 297 -12 1043 224 107 13 chrX 35704654 35704953 -126894977 - L1ME2 LINE L1 -10 6154 5828 618 290 42 28 chrX 35704952 35705409 -126894521 + L1ME3A LINE L1 5437 5896 -274 * 302 190 32 11 chrX 35705435 35705530 -126894400 - L1ME1 LINE L1 -207 5959 5860 24 0 0 0 chrX 35705794 35705818 -126894112 + AT_rich Low_complexity Low_complexity 1 24 0 2203 86 31 0 chrX 35706668 35706959 -126892971 - AluSg SINE Alu -10 300 1 289 271 75 53 chrX 35707908 35708041 -126891889 + L2 LINE L2 3136 3271 -1 459 248 85 0 chrX 35708201 35708330 -126891600 + MLT1J2 LTR MaLR 1 140 -310 1678 161 15 7 chrX 35708499 35708773 -126891157 - AluSx SINE Alu -36 276 1 2034 203 88 103 chrX 35708844 35709593 -126890337 - MER21B LTR ERV1 -124 739 2 874 134 0 0 chrX 35709620 35709747 -126890183 - FLAM_C SINE Alu -16 127 1 356 178 14 14 chrX 35709818 35709891 -126890039 - MER21B LTR ERV1 -124 739 667 2530 65 0 3 chrX 35710663 35710970 -126888960 - AluY SINE Alu -2 309 4 269 234 66 137 chrX 35711749 35711786 -126888144 - MLT1J LTR MaLR -245 205 167 2390 152 23 23 chrX 35711786 35712215 -126887715 - MSTB1 LTR MaLR -3 429 1 269 234 66 137 chrX 35712215 35712346 -126887584 - MLT1J LTR MaLR -283 167 51 188 288 68 0 chrX 35713806 35713865 -126886065 - L2 LINE L2 0 3272 3210 2244 109 0 3 chrX 35714019 35714321 -126885609 - AluSx SINE Alu -11 301 1 187 327 96 65 chrX 35714349 35714548 -126885382 + L2 LINE L2 2735 2939 -375 228 86 0 0 chrX 35714711 35714746 -126885184 + (ATGTG)n Simple_repeat Simple_repeat 1 35 0 243 270 153 9 chrX 35715906 35716017 -126883913 - MIR SINE MIR -10 252 126 239 182 0 0 chrX 35716158 35716202 -126883728 - LTR67 LTR ERVL -385 172 129 478 273 44 66 chrX 35716505 35716688 -126883242 - MIR SINE MIR -15 247 69 316 271 0 0 chrX 35716790 35716860 -126883070 + L2 LINE L2 3203 3272 0 745 243 27 57 chrX 35717063 35717326 -126882604 + LTR16A1 LTR ERVL 200 454 -3 183 80 0 0 chrX 35717392 35717417 -126882513 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2146 143 3 11 chrX 35717489 35717628 -126882302 - L1PB1 LINE L1 -1 6150 6012 3501 123 7 26 chrX 35717628 35718419 -126881511 - L1PA12 LINE L1 -149 6019 5271 1878 234 36 18 chrX 35718416 35719137 -126880793 - L1MDa LINE L1 -3451 3506 2775 * 315 331 48 36 chrX 35719149 35719453 -126880477 - L1MDa LINE L1 -4240 2719 2410 1487 258 58 23 chrX 35719610 35721727 -126878203 - L1MDa LINE L1 -4544 2415 2 1687 237 24 19 chrX 35723535 35724000 -126875930 - MLT1C LTR MaLR 0 467 1 2560 48 7 0 chrX 35724892 35725201 -126874729 - AluY SINE Alu 0 311 1 2408 69 0 7 chrX 35725405 35725711 -126874219 + AluY SINE Alu 1 304 -7 2223 120 0 19 chrX 35726200 35726516 -126873414 - AluSx SINE Alu -2 310 1 435 324 66 90 chrX 35726541 35727165 -126872765 - L1MC4a LINE L1 -1895 5913 5305 3236 107 0 0 chrX 35727517 35727984 -126871946 - L1PA14 LINE L1 0 6161 5695 752 156 9 120 chrX 35728370 35728595 -126871335 - MER58C DNA MER1_type -7 208 9 22 0 0 0 chrX 35728618 35728640 -126871290 + AT_rich Low_complexity Low_complexity 1 22 0 2059 125 46 55 chrX 35729280 35729647 -126870283 + THE1B LTR MaLR 1 364 0 1456 210 35 46 chrX 35729700 35730094 -126869836 - MLT1B LTR MaLR -1 395 1 997 133 6 24 chrX 35730184 35730350 -126869580 - AluSg/x SINE Alu -26 286 124 563 226 26 89 chrX 35731166 35731349 -126868581 - MIR SINE MIR -55 153 11 2493 199 35 0 chrX 35732433 35732941 -126866989 + HERVL74 LTR ERVL 1571 2096 -3589 4536 219 49 20 chrX 35733072 35734144 -126865786 + HERVL74 LTR ERVL 2251 3354 -202 813 162 71 30 chrX 35734150 35734347 -126865583 + LTR52 LTR ERVL 214 418 -3 709 268 79 48 chrX 35734347 35734687 -126865243 - MLT1J2 LTR MaLR -47 403 53 518 248 8 8 chrX 35736127 35736244 -126863686 + MIR3 SINE MIR 87 203 -5 353 283 21 35 chrX 35736363 35736508 -126863422 + L2 LINE L2 2322 2464 -850 221 263 38 38 chrX 35736641 35736721 -126863209 + MIR SINE MIR 12 91 -171 422 254 145 7 chrX 35736811 35736949 -126862981 + MIR SINE MIR 105 261 -1 1947 149 3 3 chrX 35737157 35737453 -126862477 - AluJb SINE Alu -16 296 1 1441 142 161 0 chrX 35737602 35737856 -126862074 - AluJo SINE Alu -17 295 1 549 218 32 0 chrX 35738002 35738145 -126861785 + MLT1G1 LTR MaLR 7 113 -442 569 206 14 21 chrX 35738197 35738338 -126861592 - MLT1H LTR MaLR -259 290 151 463 272 79 22 chrX 35738381 35738609 -126861321 + MLT1G LTR MaLR 112 352 -238 468 216 36 58 chrX 35738828 35738967 -126860963 + MLT1G LTR MaLR 411 546 -44 329 373 102 13 chrX 35739069 35739383 -126860547 + L2 LINE L2 2636 2977 -337 284 174 0 29 chrX 35739421 35739490 -126860440 + CT-rich Low_complexity Low_complexity 2 68 0 488 226 188 6 chrX 35739515 35739696 -126860234 - MLT1H1 LTR MaLR -7 548 335 402 167 2 0 chrX 35739702 35739775 -126860155 - MLT1H LTR MaLR -416 133 17 1867 157 32 35 chrX 35739911 35740312 -126859618 - L1MA4 LINE L1 -3 6297 5898 2294 84 7 3 chrX 35741123 35741421 -126858509 + AluY SINE Alu 1 299 -12 235 203 31 0 chrX 35741595 35741659 -126858271 - L1ME LINE L1 -239 5882 5817 431 301 48 14 chrX 35741665 35741881 -126858049 - L1ME LINE L1 -392 5729 5552 785 297 42 25 chrX 35742790 35743144 -126856786 - LTR16A LTR ERVL -66 384 25 411 347 21 34 chrX 35743255 35743494 -126856436 + MIR SINE MIR 21 256 -6 201 333 0 0 chrX 35743618 35743656 -126856274 + MIR3 SINE MIR 137 177 -31 2196 154 70 7 chrX 35743656 35744059 -126855871 - MSTA LTR MaLR 0 428 1 201 333 0 0 chrX 35744059 35744086 -126855844 + MIR3 SINE MIR 176 202 -6 1366 154 136 84 chrX 35744684 35744880 -126855050 - MLT1B LTR MaLR -2 388 204 2367 72 3 0 chrX 35744880 35745173 -126854757 - AluY SINE Alu -17 294 1 1366 154 136 84 chrX 35745173 35745345 -126854585 - MLT1B LTR MaLR -186 204 1 21 36 0 0 chrX 35745992 35746020 -126853910 + AT_rich Low_complexity Low_complexity 1 28 0 268 320 50 0 chrX 35746327 35746427 -126853503 + MER5C DNA MER1_type 2 106 -218 1121 197 32 0 chrX 35746487 35746736 -126853194 + MER33 DNA MER1_type 1 257 -67 5940 137 13 14 chrX 35746740 35746924 -126853006 - L1MC1 LINE L1 -2 6331 6148 2667 116 81 0 chrX 35746924 35747320 -126852610 - MSTA LTR MaLR 0 428 1 5940 137 13 14 chrX 35747320 35748163 -126851767 - L1MC1 LINE L1 -185 6148 5302 5868 115 7 62 chrX 35748592 35749624 -126850306 - L1PA16 LINE L1 -9 6157 5144 10251 224 13 42 chrX 35749631 35750020 -126849910 - L1PA16 LINE L1 -1311 4835 4436 309 0 0 0 chrX 35750020 35750064 -126849866 - AluY SINE Alu 0 301 258 10251 224 13 42 chrX 35750064 35752674 -126847256 - L1PA16 LINE L1 -1710 4436 1881 2810 227 26 5 chrX 35752674 35753455 -126846475 - L1MC1 LINE L1 -814 5332 4536 323 190 13 0 chrX 35753460 35753539 -126846391 + MER33 DNA MER1_type 242 321 -3 240 35 0 0 chrX 35753815 35753844 -126846086 + (TG)n Simple_repeat Simple_repeat 2 30 0 501 286 65 69 chrX 35754437 35754923 -126845007 + LTR67 LTR ERVL 6 554 -3 387 97 125 0 chrX 35755269 35755341 -126844589 + MER53 DNA DNA 1 81 -108 5432 129 14 4 chrX 35755549 35756867 -126843063 + L1PA13 LINE L1 4347 5679 -489 26 50 0 0 chrX 35756873 35756913 -126843017 + AT_rich Low_complexity Low_complexity 1 40 0 3567 90 2 0 chrX 35756936 35757427 -126842503 + L1PA13 LINE L1 5668 6159 -4 304 275 81 47 chrX 35757498 35757647 -126842283 - MIR SINE MIR -13 249 96 1791 190 14 19 chrX 35759974 35760338 -126839592 + MLT1A1 LTR MaLR 4 365 0 1314 185 50 7 chrX 35760340 35760642 -126839288 - LTR16C LTR ERVL -9 482 168 272 264 128 80 chrX 35761385 35761510 -126838420 - L2 LINE L2 0 3272 3142 1894 151 21 18 chrX 35761690 35762028 -126837902 - MER44D DNA MER2_type 0 609 1 481 298 120 31 chrX 35762076 35762301 -126837629 + MIR SINE MIR 10 254 -8 392 294 102 32 chrX 35762752 35762939 -126836991 - L2 LINE L2 -5 3308 3109 466 319 122 24 chrX 35763206 35763535 -126836395 - L2 LINE L2 -467 2847 2487 270 333 0 0 chrX 35763707 35763779 -126836151 + MIR3 SINE MIR 97 168 -40 275 289 78 56 chrX 35763894 35764041 -126835889 - MIR SINE MIR -52 210 59 793 172 0 23 chrX 35764046 35764174 -126835756 + FLAM_C SINE Alu 1 125 -8 1382 190 4 8 chrX 35764837 35765074 -126834856 - MSTB LTR MaLR 0 426 191 7528 177 27 29 chrX 35765074 35766245 -126833685 - MST-int LTR MaLR -283 1368 198 2182 144 0 0 chrX 35766245 35766557 -126833373 - AluSx SINE Alu 0 312 1 7528 177 27 29 chrX 35766557 35766755 -126833175 - MST-int LTR MaLR -1453 198 1 1269 225 0 4 chrX 35766947 35767191 -126832739 - MLT1H1 LTR MaLR -9 546 304 337 217 0 0 chrX 35767194 35767263 -126832667 - MLT1H1 LTR MaLR -486 69 1 2341 105 0 0 chrX 35767563 35767858 -126832072 + AluSg SINE Alu 1 295 -15 511 296 88 58 chrX 35767976 35768341 -126831589 + L2 LINE L2 2871 3246 -67 285 75 0 0 chrX 35768368 35768408 -126831522 + (TG)n Simple_repeat Simple_repeat 1 40 0 628 227 87 12 chrX 35768701 35768873 -126831057 + MLT1J LTR MaLR 10 194 -317 513 298 22 36 chrX 35768925 35769150 -126830780 + MLT1J LTR MaLR 288 509 -2 1034 182 116 12 chrX 35770056 35770298 -126829632 - LTR16C LTR ERVL -1 490 224 313 189 54 14 chrX 35770339 35770413 -126829517 + HAL1 LINE L1 2430 2506 -1 2289 92 10 0 chrX 35771027 35771331 -126828599 + AluY SINE Alu 1 307 -4 3119 189 73 22 chrX 35771449 35772131 -126827799 - L1ME3 LINE L1 -1 6161 5445 2298 110 0 3 chrX 35772570 35772880 -126827050 - AluSx SINE Alu -3 309 1 291 250 78 62 chrX 35772985 35773113 -126826817 - L2 LINE L2 0 3272 3143 214 356 138 31 chrX 35773345 35773730 -126826200 - L2 LINE L2 -337 2977 2552 1903 344 55 30 chrX 35773984 35775560 -126824370 + L2 LINE L2 1699 3313 0 1087 280 25 6 chrX 35775686 35776000 -126823930 + MER102b DNA MER1_type 1 320 -21 386 222 33 11 chrX 35776158 35776248 -126823682 - MIR3 SINE MIR -41 167 76 3808 125 30 82 chrX 35776477 35777205 -126822725 + LTR8 LTR ERV1 1 690 -1 312 27 0 0 chrX 35777205 35777242 -126822688 + (TAG)n Simple_repeat Simple_repeat 2 38 0 251 101 0 203 chrX 35777377 35777456 -126822474 - L1MB4 LINE L1 0 6174 6111 1750 171 107 0 chrX 35777457 35777784 -126822146 - L1MB5 LINE L1 -134 6040 5679 200 108 0 54 chrX 35778165 35778202 -126821728 - L2 LINE L2 -1 3312 3278 377 152 0 15 chrX 35778703 35778769 -126821161 + AluS SINE Alu 226 290 -10 3831 103 56 22 chrX 35778769 35779372 -126820558 - MER4-int LTR ERV1 -2135 4463 3840 4061 119 101 53 chrX 35779376 35780276 -126819654 - MER4-int LTR ERV1 -2919 3679 2737 1351 168 71 0 chrX 35780279 35780517 -126819413 + LTR8 LTR ERV1 4 258 -433 4618 72 47 11 chrX 35780517 35781223 -126818707 - MER4A-int LTR ERV1 -4104 2494 1764 1457 143 54 4 chrX 35781236 35781494 -126818436 - MER4A-int LTR ERV1 -5573 1185 915 4430 103 7 14 chrX 35781519 35782139 -126817791 - MER4A-int LTR ERV1 -5946 812 198 1261 242 94 11 chrX 35782153 35782504 -126817426 - MER4A-int LTR ERV1 -4107 2224 1845 2789 125 103 24 chrX 35782574 35783178 -126816752 - MER4A-int LTR ERV1 -5794 804 1 1867 110 6 88 chrX 35783181 35783500 -126816430 - MER4A LTR ERV1 0 664 372 638 96 43 11 chrX 35783528 35783622 -126816308 - MER4A LTR ERV1 -567 97 1 1413 213 89 3 chrX 35783888 35783966 -126815964 - MER2 DNA MER2_type 0 345 275 3911 167 22 48 chrX 35783966 35784708 -126815222 + MER72 LTR ERV1 1 722 0 1413 213 89 3 chrX 35784708 35784943 -126814987 - MER2 DNA MER2_type -70 275 5 296 270 61 26 chrX 35785478 35785593 -126814337 + MIR SINE MIR 14 132 -130 2624 153 35 31 chrX 35785595 35786077 -126813853 + MER110 LTR ERV1 1 484 -7 219 261 14 14 chrX 35786077 35786146 -126813784 + MIR3 SINE MIR 132 200 -8 723 111 40 8 chrX 35786313 35786439 -126813491 + L1MB3 LINE L1 6047 6176 -7 6041 174 21 28 chrX 35787675 35788722 -126811208 - MER45B DNA AcHobo 0 1040 1 480 293 48 7 chrX 35789386 35789533 -126810397 - MIR SINE MIR -87 175 23 636 221 120 49 chrX 35790594 35790961 -126808969 + LTR16C LTR ERVL 62 491 0 881 152 0 0 chrX 35791082 35791227 -126808703 - L1P LINE L1 -1080 5066 4922 7182 75 6 3 chrX 35791240 35792303 -126807627 + L1PA10 LINE L1 5104 6168 0 430 344 6 18 chrX 35795286 35795449 -126804481 - L2 LINE L2 -188 3084 2924 539 244 16 0 chrX 35795549 35795672 -126804258 - L2 LINE L2 0 3313 3189 325 313 0 55 chrX 35795677 35795805 -126804125 - L2 LINE L2 -508 2806 2686 314 260 89 19 chrX 35796586 35796689 -126803241 + MLT1I LTR MaLR 63 154 -255 477 198 11 0 chrX 35796798 35796889 -126803041 + MLT1I LTR MaLR 318 409 0 225 208 0 0 chrX 35797859 35797907 -126802023 - LTR66 LTR ERVL -168 442 395 495 0 0 0 chrX 35798469 35798524 -126801406 + (TC)n Simple_repeat Simple_repeat 1 55 0 342 0 0 0 chrX 35798523 35798561 -126801369 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 375 354 29 34 chrX 35798670 35798879 -126801051 - MLT1K LTR MaLR -207 381 174 930 99 19 62 chrX 35799510 35799672 -126800258 - THE1C LTR MaLR 0 375 221 332 367 79 0 chrX 35799706 35799935 -126799995 + L3 LINE CR1 338 584 -993 2802 46 15 3 chrX 35800143 35800472 -126799458 - L1PA7 LINE L1 0 6154 5822 1074 143 74 37 chrX 35800484 35800700 -126799230 - THE1C LTR MaLR -151 224 1 11015 116 8 22 chrX 35800700 35802299 -126797631 - THE1C-int LTR MaLR 0 1580 4 2136 126 40 37 chrX 35802302 35802676 -126797254 - THE1C LTR MaLR 0 375 1 1083 261 74 37 chrX 35803187 35803593 -126796337 - LTR16A LTR ERVL -13 437 17 225 274 14 0 chrX 35803656 35803729 -126796201 - L1ME4a LINE L1 -103 6018 5945 2091 188 9 47 chrX 35803830 35803929 -126796001 - MER96B DNA MER1_type? 0 417 316 2400 154 32 14 chrX 35803929 35804363 -126795567 + L1MA4 LINE L1 5859 6300 0 2091 188 9 47 chrX 35804363 35804689 -126795241 - MER96B DNA MER1_type? -101 316 8 390 259 38 30 chrX 35804763 35804894 -126795036 + L2 LINE L2 2501 2632 -682 473 175 24 63 chrX 35804933 35805059 -126794871 - L1M4 LINE L1 -1048 5098 4978 629 308 59 36 chrX 35805184 35805825 -126794105 - L1ME4a LINE L1 -368 5802 5119 2197 96 20 0 chrX 35805825 35806118 -126793812 - AluSq SINE Alu -14 299 1 629 308 59 36 chrX 35806118 35806322 -126793608 - L1ME4a LINE L1 -1051 5119 4921 612 261 130 10 chrX 35806625 35806832 -126793098 + MIR SINE MIR 31 262 0 226 188 12 47 chrX 35807315 35807400 -126792530 + (TATAA)n Simple_repeat Simple_repeat 1 82 0 631 245 155 7 chrX 35807597 35807752 -126792178 + MER5A DNA MER1_type 6 183 -6 1159 158 0 5 chrX 35808340 35808524 -126791406 + MER5A DNA MER1_type 7 189 0 548 280 39 39 chrX 35808558 35808740 -126791190 + MIR3 SINE MIR 8 189 -19 250 323 0 42 chrX 35809273 35809369 -126790561 + L2 LINE L2 2873 2964 -349 2222 202 112 31 chrX 35810547 35811121 -126788809 + MLT1E3 LTR MaLR 5 624 0 388 299 118 68 chrX 35811656 35811669 -126788261 - L2 LINE L2 -688 2626 2615 1220 211 42 5 chrX 35811669 35811882 -126788048 - MER58A DNA MER1_type 0 224 4 388 299 118 68 chrX 35811882 35812106 -126787824 - L2 LINE L2 -699 2615 2404 267 31 0 0 chrX 35812106 35812138 -126787792 + (TG)n Simple_repeat Simple_repeat 2 33 0 388 299 118 68 chrX 35812138 35812249 -126787681 - L2 LINE L2 -910 2404 2300 183 42 0 0 chrX 35812249 35812273 -126787657 + (GA)n Simple_repeat Simple_repeat 1 24 0 388 299 118 68 chrX 35812273 35812363 -126787567 - L2 LINE L2 -1014 2300 2164 2297 266 11 21 chrX 35812959 35813179 -126786751 - MLT1H1 LTR MaLR 0 555 334 2203 180 0 5 chrX 35813179 35813546 -126786384 - MLT1A1 LTR MaLR 0 365 1 2297 266 11 21 chrX 35813546 35813886 -126786044 - MLT1H1 LTR MaLR -221 334 1 683 327 45 36 chrX 35814017 35814353 -126785577 - LTR16C LTR ERVL -10 481 143 1423 159 30 4 chrX 35814366 35814599 -126785331 - L1PA16 LINE L1 -16 6150 5912 590 246 148 113 chrX 35815805 35816391 -126783539 - MLT1L LTR MaLR -6 609 3 418 347 24 18 chrX 35816399 35816566 -126783364 + MIR3 SINE MIR 37 204 -4 234 292 0 0 chrX 35817059 35817124 -126782806 + L2 LINE L2 3208 3272 0 1360 275 71 43 chrX 35817323 35818287 -126781643 - L2 LINE L2 -5 3308 2315 360 77 19 0 chrX 35819400 35819452 -126780478 + MADE1 DNA Mariner 28 80 0 348 208 144 32 chrX 35819452 35819567 -126780363 - MER112 DNA MER1_type -81 179 51 445 363 60 12 chrX 35819595 35819843 -126780087 + MIR SINE MIR 2 261 -1 4601 219 30 16 chrX 35820399 35822351 -126777579 - L1MB7 LINE L1 0 6184 4201 5384 224 42 25 chrX 35822362 35823623 -126776307 + L1M4 LINE L1 13 1295 -5247 1109 120 0 6 chrX 35823623 35823781 -126776149 + Tigger1 DNA MER2_type 1 157 -2261 * 1385 115 29 5 chrX 35823773 35823981 -126775949 + Tigger1 DNA MER2_type 2205 2417 -1 1621 149 122 0 chrX 35823984 35824320 -126775610 + L1M4 LINE L1 1291 1667 -4979 7518 234 38 10 chrX 35824325 35825753 -126774177 - L1MB7 LINE L1 -1933 4213 2713 1918 183 127 29 chrX 35825753 35826169 -126773761 - MSTB2 LTR MaLR 0 457 1 7518 234 38 10 chrX 35826169 35826751 -126773179 - L1MB7 LINE L1 -3433 2713 2148 2091 220 14 19 chrX 35826748 35826954 -126772976 - L1MD2 LINE L1 -3 6356 6151 * 222 62 0 0 chrX 35826954 35826986 -126772944 + (TG)n Simple_repeat Simple_repeat 1 32 0 2091 220 14 19 chrX 35826986 35827265 -126772665 - L1MD2 LINE L1 -208 6151 5873 642 176 10 0 chrX 35827270 35827372 -126772558 - U6 snRNA snRNA -4 103 1 3044 241 54 54 chrX 35827373 35827793 -126772137 - L1M4c LINE L1 -4127 2698 2279 2365 81 3 0 chrX 35827793 35828091 -126771839 - AluSx SINE Alu -13 299 1 3044 241 54 54 chrX 35828091 35828989 -126770941 - L1M4c LINE L1 -4546 2279 1249 862 121 60 0 chrX 35828989 35829138 -126770792 - L1MA4 LINE L1 -6 6294 6137 3044 241 54 54 chrX 35829138 35829455 -126770475 - L1M4c LINE L1 -5576 1249 933 641 299 105 25 chrX 35829591 35829905 -126770025 - L1M4c LINE L1 -5667 875 537 331 388 61 0 chrX 35829964 35830111 -126769819 - L1M4c LINE L1 -6021 525 370 517 255 27 5 chrX 35830159 35830343 -126769587 - L1M4c LINE L1 -6341 201 14 268 278 111 0 chrX 35832365 35832455 -126767475 + MIR SINE MIR 53 152 -110 204 286 16 0 chrX 35832725 35832788 -126767142 + (CA)n Simple_repeat Simple_repeat 1 64 0 521 189 67 67 chrX 35833268 35833432 -126766498 + MER112 DNA MER1_type 2 165 -95 1053 261 91 39 chrX 35833464 35833676 -126766254 + MLT1J2 LTR MaLR 21 221 -229 1836 193 25 11 chrX 35833676 35834033 -126765897 + MLT1A1 LTR MaLR 4 365 0 1053 261 91 39 chrX 35834033 35834226 -126765704 + MLT1J2 LTR MaLR 221 447 -3 508 273 31 0 chrX 35834378 35834506 -126765424 + MER94 DNA DNA 1 132 -2 260 233 116 23 chrX 35834543 35834629 -126765301 + MER5C DNA MER1_type 227 320 -4 329 106 0 0 chrX 35835633 35835680 -126764250 + MER5B DNA MER1_type 130 176 -2 501 219 168 13 chrX 35835703 35835858 -126764072 - MER5A DNA MER1_type -2 187 9 1625 177 17 128 chrX 35836099 35836506 -126763424 - MLT1A1 LTR MaLR -1 364 3 1770 214 73 12 chrX 35836750 35837175 -126762755 - LTR37B LTR ERV1 0 468 18 21 36 0 0 chrX 35837439 35837467 -126762463 + AT_rich Low_complexity Low_complexity 1 28 0 348 197 45 0 chrX 35838599 35838665 -126761265 - U3 snRNA snRNA -145 72 4 254 143 95 16 chrX 35838675 35838738 -126761192 + Tigger7 DNA MER2_type 2420 2487 0 455 305 30 36 chrX 35838958 35839125 -126760805 + MIR3 SINE MIR 5 170 -38 1729 215 84 42 chrX 35839152 35839677 -126760253 + MLT1G LTR MaLR 27 573 -17 197 237 0 0 chrX 35841453 35841491 -126758439 - L2 LINE L2 -21 3292 3255 233 331 38 38 chrX 35842326 35842486 -126757444 + MIR SINE MIR 49 208 -54 188 283 33 33 chrX 35842505 35842565 -126757365 - MIR SINE MIR -169 93 34 195 42 0 0 chrX 35842685 35842709 -126757221 + (CATA)n Simple_repeat Simple_repeat 1 24 0 2423 82 3 0 chrX 35842731 35843036 -126756894 + AluSp SINE Alu 1 306 -7 1487 199 76 8 chrX 35843177 35843559 -126756371 - L1ME1 LINE L1 -4 6162 5755 1026 277 87 64 chrX 35843596 35843986 -126755944 + MER115 DNA AcHobo 2 400 -293 665 308 11 5 chrX 35844151 35844336 -126755594 - MIR3 SINE MIR -3 205 20 993 204 38 12 chrX 35844350 35844590 -126755340 - Charlie2 DNA MER1_type 0 2862 2617 19611 168 5 12 chrX 35844597 35849184 -126750746 - L1PA13 LINE L1 -19 6795 2239 7266 121 27 15 chrX 35849184 35850242 -126749688 - MER11C LTR ERVK 0 1071 1 8147 54 8 14 chrX 35850242 35851245 -126748685 - HERVK11 LTR ERVK 0 7953 6957 * 9545 49 8 1 chrX 35851230 35852412 -126747518 - HERVK11 LTR ERVK -1186 6767 5525 1915 47 0 4 chrX 35852410 35852644 -126747286 - HERVK11 LTR ERVK -3352 4601 4369 * 14166 150 20 6 chrX 35852644 35854827 -126745103 - L1PA13 LINE L1 -4573 2214 1 514 241 69 6 chrX 35854834 35855008 -126744922 - Charlie2 DNA MER1_type -230 2632 2448 211 219 0 0 chrX 35855035 35855076 -126744854 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 1191 242 76 70 chrX 35855111 35855793 -126744137 - L2 LINE L2 0 3313 2628 2250 165 23 29 chrX 35855797 35856192 -126743738 + MLT2B1 LTR ERVL 1 375 -39 309 109 0 0 chrX 35856192 35856238 -126743692 + (TG)n Simple_repeat Simple_repeat 2 47 0 2250 165 23 29 chrX 35856238 35856276 -126743654 + MLT2B1 LTR ERVL 375 412 -2 1569 251 58 36 chrX 35856312 35856779 -126743151 + LTR33 LTR ERVL 39 515 -6 1441 231 164 24 chrX 35856784 35857204 -126742726 - MLT1G1 LTR MaLR -8 587 109 618 189 98 33 chrX 35857251 35857338 -126742592 - L2 LINE L2 -685 2629 2549 2842 131 14 32 chrX 35857338 35857780 -126742150 - Tigger2a DNA MER2_type 0 434 1 618 189 98 33 chrX 35857780 35857845 -126742085 - L2 LINE L2 -765 2549 2467 1150 330 55 9 chrX 35857845 35858282 -126741648 - LTR16B LTR ERVL 0 464 8 927 275 5 0 chrX 35858289 35858500 -126741430 - L2 LINE L2 -843 2471 2260 1322 174 112 114 chrX 35858527 35858938 -126740992 - Charlie2 DNA MER1_type -462 2400 1989 1806 171 3 14 chrX 35858938 35859230 -126740700 - AluJb SINE Alu -23 289 1 1322 174 112 114 chrX 35859230 35859308 -126740622 - Charlie2 DNA MER1_type -873 1989 1912 675 260 108 28 chrX 35859352 35859602 -126740328 - Charlie2 DNA MER1_type -2554 308 39 263 287 96 17 chrX 35860195 35860329 -126739601 + MIR SINE MIR 20 165 -61 185 384 16 37 chrX 35860598 35860788 -126739142 - L2 LINE L2 -182 3090 2905 7559 50 2 0 chrX 35860824 35862120 -126737810 - L1PA7 LINE L1 0 6154 4862 925 65 0 0 chrX 35862120 35862227 -126737703 - U6 snRNA snRNA 0 107 1 317 311 33 50 chrX 35862239 35862419 -126737511 - L1ME LINE L1 -392 5729 5553 414 307 50 0 chrX 35862584 35862724 -126737206 + MIR SINE MIR 2 148 -114 453 260 58 46 chrX 35863529 35863561 -126736369 - MIR SINE MIR -27 235 205 2625 139 27 27 chrX 35863561 35863970 -126735960 + LTR57 LTR ERVL 3 411 0 453 260 58 46 chrX 35863970 35864110 -126735820 - MIR SINE MIR -57 205 61 216 154 0 51 chrX 35865163 35865202 -126734728 + L2 LINE L2 3243 3279 -34 360 237 180 71 chrX 35865238 35865521 -126734409 - MLT1J LTR MaLR -143 368 55 2503 167 58 16 chrX 35865534 35865982 -126733948 - MLT1C LTR MaLR 0 467 1 1377 253 90 43 chrX 35866004 35866513 -126733417 + MLT1H1 LTR MaLR 23 555 0 636 239 15 8 chrX 35867474 35867604 -126732326 + MIR SINE MIR 14 144 -118 1060 228 57 111 chrX 35867604 35867939 -126731991 + MLT1G LTR MaLR 1 312 -283 3462 196 8 39 chrX 35867951 35868618 -126731312 - MER82 DNA MER2_type -6 647 2 280 238 40 50 chrX 35868686 35868787 -126731143 + MLT1G LTR MaLR 367 466 -76 187 216 59 0 chrX 35868914 35868965 -126730965 + MIR SINE MIR 139 192 -70 388 327 103 6 chrX 35869059 35869224 -126730706 - MIR3 SINE MIR -3 205 25 2957 119 16 23 chrX 35870886 35871321 -126728609 - MSTB1 LTR MaLR 0 432 1 432 0 0 0 chrX 35871627 35871675 -126728255 + (TG)n Simple_repeat Simple_repeat 1 48 0 499 186 20 10 chrX 35871755 35871857 -126728073 + MER5A DNA MER1_type 86 188 -1 2085 159 25 22 chrX 35872433 35872797 -126727133 + MLT1A1 LTR MaLR 1 365 0 1716 250 129 28 chrX 35873916 35874497 -126725433 - MLT2F LTR ERVL 0 663 24 459 287 64 19 chrX 35875313 35875470 -126724460 - MIR3 SINE MIR -2 206 43 191 181 28 139 chrX 35877264 35877336 -126722594 - L2 LINE L2 -27 3245 3182 1188 144 16 5 chrX 35877544 35877731 -126722199 + MER5A DNA MER1_type 1 189 0 210 258 65 0 chrX 35877816 35877878 -126722052 + L2 LINE L2 2912 2977 -336 2227 54 0 25 chrX 35877923 35878200 -126721730 + AluY SINE Alu 41 310 -1 229 293 0 43 chrX 35878204 35878320 -126721610 + L2 LINE L2 3127 3237 -76 2498 243 45 33 chrX 35878677 35879234 -126720696 - L2 LINE L2 0 3313 2742 2325 96 3 0 chrX 35879234 35879527 -126720403 - AluSp SINE Alu -11 302 9 2498 243 45 33 chrX 35879527 35879991 -126719939 - L2 LINE L2 -571 2742 2285 182 171 24 0 chrX 35880671 35880712 -126719218 + (TA)n Simple_repeat Simple_repeat 2 43 0 2388 157 80 9 chrX 35880744 35881170 -126718760 + MLT1D LTR MaLR 48 503 -2 637 301 8 37 chrX 35881172 35881418 -126718512 - MIR SINE MIR -21 241 3 202 195 24 0 chrX 35881552 35881593 -126718337 + L2 LINE L2 3265 3306 -7 2169 119 34 91 chrX 35882459 35882845 -126717085 - THE1B LTR MaLR 0 364 1 897 298 70 32 chrX 35883206 35883679 -126716251 - LTR16C LTR ERVL 0 491 1 187 179 51 0 chrX 35884749 35884788 -126715142 - L2 LINE L2 0 3313 3273 219 286 155 0 chrX 35885406 35885490 -126714440 - MIR SINE MIR -164 98 2 5502 138 31 10 chrX 35885735 35886520 -126713410 - L1MA7 LINE L1 0 6291 5483 2335 94 0 0 chrX 35886520 35886817 -126713113 - AluSg SINE Alu -13 297 1 5502 138 31 10 chrX 35886817 35886945 -126712985 - L1MA7 LINE L1 -808 5483 5359 1608 134 123 0 chrX 35888797 35889058 -126710872 - AluSx SINE Alu -19 293 1 249 286 54 9 chrX 35889128 35889240 -126710690 - L1MC4 LINE L1 -2 8040 7924 960 138 26 20 chrX 35889829 35889981 -126709949 + L1PB4 LINE L1 5998 6150 -6 43588 34 23 1 chrX 35890005 35896025 -126703905 - L1PA3 LINE L1 0 6155 2 294 164 55 0 chrX 35897203 35897258 -126702672 + L2 LINE L2 3210 3267 -5 1083 252 99 85 chrX 35898021 35898206 -126701724 + LTR16C LTR ERVL 37 218 -273 2580 55 3 3 chrX 35898206 35898517 -126701413 - AluY SINE Alu 0 311 1 1083 252 99 85 chrX 35898517 35898755 -126701175 + LTR16C LTR ERVL 218 466 -25 297 0 0 0 chrX 35898797 35898830 -126701100 + (CA)n Simple_repeat Simple_repeat 2 34 0 594 264 8 0 chrX 35898830 35898955 -126700975 + Tigger3(Golem) DNA MER2_type 3 128 -2901 * 4289 124 57 19 chrX 35898926 35899650 -126700280 + Tigger3(Golem) DNA MER2_type 2277 3027 -2 234 247 12 35 chrX 35899811 35899896 -126700034 - L1MC/D LINE L1 -2004 5804 5722 403 255 19 19 chrX 35900415 35900521 -126699409 - MIR3 SINE MIR -25 183 78 1274 188 40 29 chrX 35900889 35901161 -126698769 - ORSL DNA AcHobo 0 275 1 2113 153 7 77 chrX 35901195 35901612 -126698318 - MLT1B LTR MaLR -2 388 1 263 344 58 13 chrX 35903065 35903219 -126696711 - MER5A DNA MER1_type -28 161 1 540 72 0 0 chrX 35903898 35903967 -126695963 - Alu SINE Alu -7 305 237 221 213 0 43 chrX 35904215 35904262 -126695668 - L2 LINE L2 -18 3254 3210 348 292 10 109 chrX 35904414 35904616 -126695314 - L3b LINE CR1 -256 1327 1146 541 267 55 9 chrX 35904724 35904924 -126695006 + MIR SINE MIR 4 210 -52 305 312 54 6 chrX 35905281 35905431 -126694499 + MER5A DNA MER1_type 2 162 -16 560 248 106 0 chrX 35905452 35905613 -126694317 - MER5A DNA MER1_type -11 178 1 2171 124 6 32 chrX 35906154 35906500 -126693430 - L1MC1 LINE L1 0 6333 5997 1647 243 86 41 chrX 35907779 35908265 -126691665 - MLT1J LTR MaLR -3 508 1 1402 186 104 33 chrX 35908474 35908867 -126691063 + LTR37A LTR ERV1 6 426 0 520 274 102 28 chrX 35909015 35909230 -126690700 - MIR SINE MIR 0 262 32 317 203 72 0 chrX 35909495 35909564 -126690366 + MIR SINE MIR 17 90 -118 227 147 40 53 chrX 35909590 35909647 -126690283 - MIR SINE MIR -63 145 96 229 269 200 39 chrX 35909750 35909880 -126690050 + MIR3 SINE MIR 37 187 -21 16319 191 16 27 chrX 35909896 35910321 -126689609 - L1MA4A LINE L1 -27 6978 6550 288 0 0 0 chrX 35910321 35910353 -126689577 + (TA)n Simple_repeat Simple_repeat 2 33 0 16319 191 16 27 chrX 35910353 35913404 -126686526 - L1MA4A LINE L1 -455 6550 3467 2034 43 0 0 chrX 35913404 35913639 -126686291 - L1PA4 LINE L1 -2 6153 5919 16319 191 16 27 chrX 35913639 35915190 -126684740 - L1MA4A LINE L1 -3538 3467 1920 1956 106 4 0 chrX 35915190 35915446 -126684484 + AluSp SINE Alu 39 295 -18 16319 191 16 27 chrX 35915446 35916195 -126683735 - L1MA4A LINE L1 -5085 1920 1164 383 303 28 0 chrX 35916399 35916508 -126683422 + MIR SINE MIR 127 238 -24 450 292 48 20 chrX 35917124 35917374 -126682556 - L1MC4a LINE L1 -1907 5901 5645 623 254 33 81 chrX 35917884 35918122 -126681808 - MIR SINE MIR -32 230 2 570 203 45 15 chrX 35918411 35918544 -126681386 + MIR SINE MIR 31 167 -95 2772 13 0 10 chrX 35919419 35919729 -126680201 - AluYb8 SINE Alu -11 307 1 749 230 35 11 chrX 35920441 35920564 -126679366 + MER5B DNA MER1_type 1 131 -47 279 0 0 0 chrX 35920564 35920595 -126679335 + (TG)n Simple_repeat Simple_repeat 2 32 0 749 230 35 11 chrX 35920595 35920645 -126679285 + MER5B DNA MER1_type 131 178 0 500 309 44 0 chrX 35920775 35920938 -126678992 + MIR SINE MIR 36 204 -58 533 306 105 31 chrX 35921018 35921341 -126678589 + L3 LINE CR1 665 1011 -566 1090 258 98 44 chrX 35921413 35921820 -126678110 - L2 LINE L2 0 3313 2885 724 160 37 86 chrX 35922455 35922571 -126677359 + MLT1H LTR MaLR 3 108 -441 2571 24 7 0 chrX 35922571 35922863 -126677067 - AluY SINE Alu -17 294 1 724 160 37 86 chrX 35922863 35922933 -126676997 + MLT1H LTR MaLR 108 180 -369 433 245 185 43 chrX 35923751 35923935 -126675995 - MIR SINE MIR -6 256 47 207 308 0 0 chrX 35926575 35926627 -126673303 - MIR3 SINE MIR -34 174 123 1041 131 107 94 chrX 35926790 35926840 -126673090 - L1ME1 LINE L1 -249 5917 5869 776 184 0 0 chrX 35926840 35926965 -126672965 - FLAM_A SINE Alu -8 125 1 1041 131 107 94 chrX 35926965 35927212 -126672718 - L1ME1 LINE L1 -297 5869 5616 515 263 25 0 chrX 35927212 35927330 -126672600 + MIR3 SINE MIR 43 163 -45 181 238 0 24 chrX 35927521 35927563 -126672367 + L3 LINE CR1 1523 1563 -14 2220 227 59 9 chrX 35927745 35928270 -126671660 + L1MDb LINE L1 7 557 -5852 5184 140 39 47 chrX 35928313 35929370 -126670560 + L1MD2 LINE L1 5302 6350 -9 436 220 108 65 chrX 35930186 35930418 -126669512 + LTR16A1 LTR ERVL 216 457 0 433 313 79 55 chrX 35930428 35930898 -126669032 - LTR16C LTR ERVL -9 482 2 855 234 11 6 chrX 35931333 35931508 -126668422 + MER5A DNA MER1_type 8 183 -6 783 278 70 82 chrX 35931784 35931889 -126668041 - L2 LINE L2 -11 3302 3197 351 0 0 0 chrX 35931889 35931928 -126668002 + (TG)n Simple_repeat Simple_repeat 1 39 0 783 278 70 82 chrX 35931928 35932222 -126667708 - L2 LINE L2 -116 3197 2908 22 0 0 0 chrX 35934382 35934404 -126665526 + AT_rich Low_complexity Low_complexity 1 22 0 437 214 69 0 chrX 35934932 35935063 -126664867 - MER103 DNA DNA -20 146 7 430 235 141 7 chrX 35935790 35935939 -126663991 - LTR33 LTR ERVL -6 515 347 1511 342 89 41 chrX 35936801 35937673 -126662257 + L2 LINE L2 482 1311 -2003 1422 198 86 18 chrX 35937673 35937951 -126661979 - AluJo SINE Alu -15 297 1 1511 342 89 41 chrX 35937951 35938243 -126661687 + L2 LINE L2 1311 1715 -1599 264 111 0 0 chrX 35938243 35938288 -126661642 + (CA)n Simple_repeat Simple_repeat 1 45 0 1511 342 89 41 chrX 35938288 35938407 -126661523 + L2 LINE L2 1715 1827 -1487 270 320 33 0 chrX 35938650 35938772 -126661158 + MLT1I LTR MaLR 284 409 0 707 333 66 56 chrX 35938772 35939525 -126660405 + L2 LINE L2 1830 3313 0 218 32 32 0 chrX 35940039 35940070 -126659860 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4572 176 30 19 chrX 35940278 35942434 -126657496 + L1MB7 LINE L1 3886 6173 -11 1027 161 10 0 chrX 35942463 35942656 -126657274 + L1PB1 LINE L1 6 200 -6663 9832 127 49 9 chrX 35942656 35944673 -126655257 + L1PB1 LINE L1 634 2935 -3927 438 110 96 0 chrX 35944673 35944746 -126655184 + MADE1 DNA Mariner 1 80 0 9832 127 49 9 chrX 35944746 35945625 -126654305 + L1PB1 LINE L1 2935 3777 -3085 5910 132 15 10 chrX 35945627 35946184 -126653746 + L1PB1 LINE L1 5542 6095 -772 2430 111 40 0 chrX 35946184 35946534 -126653396 + THE1B LTR MaLR 1 364 0 5910 132 15 10 chrX 35946534 35947292 -126652638 + L1PB1 LINE L1 6095 6866 -1 448 229 149 37 chrX 35947545 35947733 -126652197 + MIR SINE MIR 40 248 -14 184 162 0 54 chrX 35947700 35947737 -126652193 + L2 LINE L2 3261 3295 -18 * 22 0 0 0 chrX 35948416 35948438 -126651492 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 35948502 35948524 -126651406 + AT_rich Low_complexity Low_complexity 1 22 0 1014 212 36 40 chrX 35948777 35949051 -126650879 + MLT1D LTR MaLR 147 419 -86 3028 138 10 14 chrX 35949057 35949565 -126650365 - MLT2B2 LTR ERVL -8 507 2 525 157 0 0 chrX 35949566 35949655 -126650275 + MLT1D LTR MaLR 538 626 0 204 40 0 0 chrX 35950374 35950399 -126649531 + (CAAAG)n Simple_repeat Simple_repeat 2 26 0 264 327 140 9 chrX 35950796 35950903 -126649027 - L2 LINE L2 -11 3261 3141 292 197 41 62 chrX 35950960 35951075 -126648855 - MLT1F LTR MaLR 0 549 439 496 239 9 0 chrX 35951608 35951721 -126648209 - MLT1L LTR MaLR -384 231 118 1391 317 168 19 chrX 35951766 35952850 -126647080 - L2 LINE L2 -508 2806 1561 1979 160 0 0 chrX 35952989 35953283 -126646647 - AluJb SINE Alu -18 294 1 398 247 41 10 chrX 35953309 35953406 -126646524 - MLT1L LTR MaLR -365 250 151 344 248 41 41 chrX 35953564 35953709 -126646221 - L1ME4a LINE L1 -3 6118 5974 255 31 0 0 chrX 35953765 35953797 -126646133 + (TG)n Simple_repeat Simple_repeat 1 32 0 300 282 104 50 chrX 35954087 35954289 -126645641 - L1ME4a LINE L1 -823 5323 5111 304 303 55 28 chrX 35954292 35954546 -126645384 + MIR SINE MIR 2 262 0 38 39 0 0 chrX 35954551 35954603 -126645327 + AT_rich Low_complexity Low_complexity 1 52 0 255 250 0 0 chrX 35955117 35955177 -126644753 + (TA)n Simple_repeat Simple_repeat 2 61 0 1016 279 16 0 chrX 35955325 35955572 -126644358 + MIR SINE MIR 2 252 -10 1322 165 8 0 chrX 35956421 35956657 -126643273 - L1MB4 LINE L1 -57 6123 5886 191 246 92 0 chrX 35957914 35957979 -126641951 + L3b LINE CR1 1319 1389 -194 268 261 90 27 chrX 35958762 35958873 -126641057 + MLT1L LTR MaLR 375 492 -123 1788 120 89 17 chrX 35959396 35959687 -126640243 - AluSx SINE Alu 0 312 1 421 237 89 30 chrX 35959988 35960123 -126639807 - MLT1L LTR MaLR -375 240 98 381 285 56 32 chrX 35960592 35960760 -126639170 + MLT1H1 LTR MaLR 33 247 -302 531 205 54 3 chrX 35960840 35961019 -126638911 + MLT1H1 LTR MaLR 322 555 0 231 224 0 0 chrX 35961019 35961067 -126638863 + MER103 DNA DNA 45 92 -74 1181 243 8 46 chrX 35961695 35961914 -126638016 + LTR16A LTR ERVL 89 290 -160 1444 190 68 55 chrX 35961914 35962299 -126637631 - MLT1B LTR MaLR 0 390 1 1181 243 8 46 chrX 35962299 35962450 -126637480 + LTR16A LTR ERVL 290 445 -5 294 297 23 62 chrX 35963049 35963177 -126636753 - L2 LINE L2 -6 3307 3185 584 281 143 29 chrX 35963213 35963423 -126636507 + MIR SINE MIR 16 249 -13 329 239 0 46 chrX 35963620 35963729 -126636201 + MLT1H LTR MaLR 59 162 -387 1652 187 137 17 chrX 35963745 35963898 -126636032 + MLT1C LTR MaLR 1 134 -333 450 0 0 0 chrX 35963898 35963948 -126635982 + (CA)n Simple_repeat Simple_repeat 2 51 0 1652 187 137 17 chrX 35963948 35964211 -126635719 + MLT1C LTR MaLR 134 467 0 317 229 62 78 chrX 35965663 35965907 -126634023 - L1ME4a LINE L1 -1 6120 5881 190 348 11 22 chrX 35966436 35966525 -126633405 - L2 LINE L2 -334 2938 2851 1328 251 75 70 chrX 35967065 35968655 -126631275 + L1MC5 LINE L1 5522 7114 -847 808 223 41 38 chrX 35968695 35968986 -126630944 + L1MC5 LINE L1 7106 7397 -564 1221 251 21 6 chrX 35968989 35969311 -126630619 + MSTD LTR MaLR 1 327 -69 1193 194 97 19 chrX 35969311 35969631 -126630299 + MER2 DNA MER2_type 1 345 0 354 197 0 0 chrX 35969631 35969702 -126630228 + MSTD LTR MaLR 326 396 0 726 231 155 39 chrX 35969703 35970115 -126629815 + L1MC5 LINE L1 7398 7857 -104 811 227 19 34 chrX 35971581 35971615 -126628315 - MLT1E1 LTR MaLR -46 608 575 2181 153 19 6 chrX 35971615 35971974 -126627956 + MLT1A1 LTR MaLR 2 365 0 811 227 19 34 chrX 35971974 35972146 -126627784 - MLT1E1 LTR MaLR -79 575 405 400 188 136 3 chrX 35972201 35972363 -126627567 - MLT1E1 LTR MaLR -391 263 32 1601 216 27 2 chrX 35972378 35972781 -126627149 + L1M4 LINE L1 4448 4860 -1286 275 0 0 28 chrX 35972856 35972892 -126627038 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7170 57 7 19 chrX 35972892 35974510 -126625420 - SVA Other Other -756 1367 1 404 132 123 38 chrX 35974521 35974627 -126625303 - L1MCa LINE L1 -4504 1922 1808 1220 222 170 6 chrX 35974628 35975133 -126624797 - L1MDa LINE L1 -2952 3128 2541 820 239 0 11 chrX 35975138 35975326 -126624604 - MLT1A2 LTR MaLR 0 374 189 241 176 74 0 chrX 35975331 35975387 -126624543 - MLT1A2 LTR MaLR -322 52 1 2606 244 68 45 chrX 35975403 35976192 -126623738 - L1MDa LINE L1 -3563 2517 1748 2034 115 58 33 chrX 35976192 35976556 -126623374 - THE1C LTR MaLR 0 375 3 2606 244 68 45 chrX 35976556 35977692 -126622238 - L1MDa LINE L1 -4332 1748 548 264 100 0 0 chrX 35977710 35977750 -126622180 + (TC)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chrX 35977753 35977781 -126622149 + (TG)n Simple_repeat Simple_repeat 1 28 0 343 312 7 65 chrX 35977789 35977927 -126622003 - L1MDa LINE L1 -5557 513 384 371 285 57 44 chrX 35978024 35978182 -126621748 - L1MDa LINE L1 -5590 480 321 289 226 49 20 chrX 35978362 35978464 -126621466 - L1MDa LINE L1 -5902 168 64 1441 266 12 12 chrX 35979003 35979406 -126620524 + MLT1I LTR MaLR 7 409 0 945 242 40 8 chrX 35980092 35980344 -126619586 - MIR SINE MIR -1 261 2 784 272 10 0 chrX 35980372 35980567 -126619363 + MER58A DNA MER1_type 1 197 -27 419 63 0 101 chrX 35980853 35980869 -126619061 - L1MA1 LINE L1 0 6302 6286 2321 110 128 16 chrX 35980869 35981252 -126618678 + MSTA LTR MaLR 1 426 -2 419 63 0 101 chrX 35981252 35981314 -126618616 - L1MA1 LINE L1 -16 6286 6232 1162 153 10 5 chrX 35982189 35982391 -126617539 - L1PA13 LINE L1 -11 6152 5950 5320 137 19 14 chrX 35982766 35984143 -126615787 - L1PA13 LINE L1 -4 6159 4771 1438 88 0 9 chrX 35984173 35984389 -126615541 - L1MA4A LINE L1 0 6303 6090 225 154 0 0 chrX 35984389 35984428 -126615502 + (TA)n Simple_repeat Simple_repeat 2 40 0 238 229 33 90 chrX 35984428 35984488 -126615442 + L1ME1 LINE L1 4757 4808 -1338 1613 190 6 34 chrX 35984488 35984809 -126615121 + AluJo SINE Alu 1 312 0 238 229 33 90 chrX 35984809 35984870 -126615060 + L1ME1 LINE L1 4808 4871 -1275 1164 267 52 35 chrX 35984897 35985324 -126614606 - MLT1C LTR MaLR 0 467 34 540 297 90 44 chrX 35985331 35985742 -126614188 + L1ME1 LINE L1 4876 5305 -841 247 239 97 26 chrX 35985747 35985902 -126614028 + L1ME1 LINE L1 5318 5483 -2325 361 363 19 0 chrX 35986039 35986196 -126613734 + L1ME1 LINE L1 5752 5911 -255 215 333 45 9 chrX 35986428 35986531 -126613399 + L3b LINE CR1 1265 1371 -212 330 368 51 0 chrX 35986531 35986648 -126613282 + MIR3 SINE MIR 3 125 -83 284 230 58 0 chrX 35986649 35986736 -126613194 - MER69 DNA AcHobo -2336 190 99 522 156 10 10 chrX 35987267 35987363 -126612567 + MER69 DNA AcHobo 547 642 -584 * 1554 187 55 31 chrX 35987361 35987765 -126612165 + MER69 DNA AcHobo 2038 2456 -70 1736 116 0 4 chrX 35987765 35988023 -126611907 - L1PA15 LINE L1 0 6165 5909 1554 187 55 31 chrX 35988023 35988094 -126611836 + MER69 DNA AcHobo 2456 2524 -2 283 259 36 45 chrX 35988334 35988446 -126611484 - MIR SINE MIR 0 262 152 909 196 95 86 chrX 35988666 35989222 -126610708 + MLT2F LTR ERVL 1 663 0 1241 243 64 106 chrX 35989513 35990109 -126609821 + MLT1G1 LTR MaLR 1 571 -24 2279 251 54 0 chrX 35990144 35990506 -126609424 - MLT1F1 LTR MaLR 0 567 165 180 0 0 0 chrX 35990506 35990526 -126609404 + (GA)n Simple_repeat Simple_repeat 1 20 0 2279 251 54 0 chrX 35990526 35990701 -126609229 - MLT1F1 LTR MaLR -402 165 1 1261 165 29 0 chrX 35991456 35991698 -126608232 - L1MB5 LINE L1 0 6174 5926 564 130 43 65 chrX 35991698 35991836 -126608094 + L1MB5 LINE L1 5794 5928 -246 * 3804 228 115 32 chrX 35991835 35992801 -126607129 - L1M4 LINE L1 -2161 4483 3599 2045 142 7 0 chrX 35992801 35993096 -126606834 - AluSx SINE Alu -15 297 1 3804 228 115 32 chrX 35993096 35993806 -126606124 - L1M4 LINE L1 -3045 3599 2661 910 98 0 0 chrX 35993815 35993948 -126605982 - L1MA1 LINE L1 0 6302 6170 283 47 23 0 chrX 35993951 35993994 -126605936 - MER57B LTR ERV1 0 434 391 7722 144 23 41 chrX 35993994 35995634 -126604296 + L1PA8A LINE L1 3 1622 -4738 21445 111 8 18 chrX 35995638 35999221 -126600709 + L1PA8A LINE L1 2141 5683 -763 2318 112 0 0 chrX 35999221 35999526 -126600404 + AluSg SINE Alu 1 305 -5 21445 111 8 18 chrX 35999526 36000282 -126599648 + L1PA8A LINE L1 5683 6445 -1 348 43 0 0 chrX 36000291 36000337 -126599593 + (CA)n Simple_repeat Simple_repeat 1 46 0 2749 104 7 0 chrX 36000338 36000741 -126599189 - MER57B LTR ERV1 -26 408 3 4786 84 6 3 chrX 36000743 36001437 -126598493 - L1MA2 LINE L1 -132 6172 5477 3555 244 58 32 chrX 36001432 36002912 -126597018 - L1M4 LINE L1 -3967 2678 765 * 2104 126 134 11 chrX 36002912 36003293 -126596637 - MSTA LTR MaLR 0 428 1 3555 244 58 32 chrX 36003293 36004079 -126595851 - L1M4 LINE L1 -5880 765 1 523 299 107 34 chrX 36004104 36004338 -126595592 - MIR SINE MIR -8 254 4 829 279 21 13 chrX 36004747 36004988 -126594942 + MIR SINE MIR 15 260 -2 1817 159 35 0 chrX 36005689 36006003 -126593927 - L1MC1 LINE L1 0 6333 6009 184 176 274 0 chrX 36006179 36006230 -126593700 - MIR SINE MIR -62 146 82 307 352 50 60 chrX 36006268 36006549 -126593381 - L2 LINE L2 -2 3270 2993 2005 181 20 50 chrX 36007186 36007627 -126592303 - MSTB1 LTR MaLR -4 428 1 236 338 43 7 chrX 36007673 36007812 -126592118 + MLT1H LTR MaLR 104 247 -302 516 292 50 92 chrX 36008723 36009226 -126590704 + MLT1K LTR MaLR 99 580 -8 681 272 83 23 chrX 36009466 36009683 -126590247 + MIR SINE MIR 10 239 -23 320 274 90 9 chrX 36009903 36010025 -126589905 - MIR SINE MIR -70 138 19 191 268 0 0 chrX 36010031 36010072 -126589858 + L2 LINE L2 3148 3188 -84 267 31 0 0 chrX 36010101 36010133 -126589797 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 784 268 60 17 chrX 36010150 36010633 -126589297 - MLT1G LTR MaLR -2 553 19 267 310 52 39 chrX 36013392 36013547 -126586383 + L2 LINE L2 2244 2400 -914 3104 162 2 0 chrX 36013600 36014175 -126585755 - L1P LINE L1 -1662 4484 3909 3813 98 7 0 chrX 36014175 36014725 -126585205 + L1PA13 LINE L1 5609 6163 0 277 316 0 0 chrX 36014747 36014823 -126585107 + L2 LINE L2 2708 2783 -531 1136 94 0 20 chrX 36014841 36014990 -126584940 + AluSq/x SINE Alu 1 146 -167 390 59 8 4 chrX 36015027 36015099 -126584831 - MLT2A1 LTR ERVL 0 444 393 236 55 73 0 chrX 36015067 36015099 -126584831 + (TA)n Simple_repeat Simple_repeat 2 60 0 * 23 0 0 0 chrX 36015099 36015122 -126584808 + AT_rich Low_complexity Low_complexity 1 23 0 9872 154 36 0 chrX 36015122 36017745 -126582185 + L1PA12 LINE L1 3523 6168 0 349 250 78 26 chrX 36017804 36017920 -126582010 - MIR SINE MIR -16 246 125 1464 155 48 3 chrX 36018873 36019182 -126580748 + MER33 DNA MER1_type 1 323 -1 24 0 0 0 chrX 36020133 36020157 -126579773 + AT_rich Low_complexity Low_complexity 1 24 0 7520 224 65 21 chrX 36020201 36023149 -126576781 - L1ME1 LINE L1 -17 6149 3072 5518 91 0 44 chrX 36023163 36023530 -126576400 - L1PA8A LINE L1 -13 6118 5737 2541 58 0 6 chrX 36023530 36023843 -126576087 - AluY SINE Alu 0 311 1 5518 91 0 44 chrX 36023843 36024298 -126575632 - L1PA8A LINE L1 -394 5737 5332 14797 97 4 1 chrX 36024298 36027203 -126572727 - L1PA7 LINE L1 -1 6153 3240 22873 127 12 83 chrX 36027203 36031678 -126568252 - L1PA8A LINE L1 -1989 4157 1 635 123 35 0 chrX 36031693 36031807 -126568123 - L1P LINE L1 -803 5343 5226 3433 121 2 0 chrX 36031811 36032339 -126567591 + L1P LINE L1 4675 5203 -943 215 149 0 21 chrX 36032398 36032445 -126567485 + (TA)n Simple_repeat Simple_repeat 1 46 0 310 208 0 0 chrX 36032451 36032523 -126567407 - L1ME1 LINE L1 -3143 3003 2932 * 6963 240 54 37 chrX 36032520 36036379 -126563551 - L1MDb LINE L1 -1688 4852 909 716 291 24 47 chrX 36036923 36037263 -126562667 - L1MDb LINE L1 -6207 333 2 465 279 0 48 chrX 36037303 36037450 -126562480 + MER5A DNA MER1_type 49 188 -1 2089 101 4 4 chrX 36037621 36037939 -126561991 - AluSc SINE Alu 0 323 6 311 341 39 39 chrX 36039060 36039239 -126560691 + MER5A DNA MER1_type 4 182 -7 897 235 0 14 chrX 36039616 36039833 -126560097 - L1PB4 LINE L1 -2 6154 5941 1833 123 7 18 chrX 36040058 36040343 -126559587 - AluSx SINE Alu -1 311 30 1781 234 41 31 chrX 36040479 36041018 -126558912 + L1ME2 LINE L1 5609 6152 -12 309 263 85 8 chrX 36041039 36041157 -126558773 + L1MC5 LINE L1 7774 7900 -61 2119 69 20 56 chrX 36041197 36041500 -126558430 + AluSc SINE Alu 8 299 -10 2253 146 8 11 chrX 36041859 36042222 -126557708 - MLT1A1 LTR MaLR 0 365 4 2347 84 0 19 chrX 36042252 36042561 -126557369 - AluSg SINE Alu -7 303 1 187 295 82 0 chrX 36042627 36042688 -126557242 + L2 LINE L2 3203 3268 -4 586 259 58 42 chrX 36042879 36043068 -126556862 + MIR SINE MIR 71 262 0 1972 137 7 0 chrX 36044799 36045083 -126554847 + AluSx SINE Alu 20 305 -7 228 220 9 64 chrX 36045088 36045197 -126554733 + L1M4 LINE L1 3222 3324 -2822 884 152 25 19 chrX 36045393 36045592 -126554338 + AluSg/x SINE Alu 152 351 0 1840 162 43 0 chrX 36045957 36046162 -126553768 - MER46B DNA MER2_type -2496 235 132 1854 104 0 4 chrX 36046162 36046413 -126553517 - AluSx SINE Alu -15 297 48 1840 162 43 0 chrX 36046413 36046552 -126553378 - MER46B DNA MER2_type -2599 132 1 1572 203 122 43 chrX 36047403 36047871 -126552059 - MLT1D LTR MaLR 0 505 1 717 214 28 7 chrX 36049005 36049150 -126550780 + MIR SINE MIR 6 153 -109 1263 264 52 42 chrX 36050672 36051272 -126548658 - L1MDa LINE L1 -869 1487 626 2677 79 6 6 chrX 36051272 36051626 -126548304 - THE1A LTR MaLR 0 355 2 1263 264 52 42 chrX 36051626 36051955 -126547975 - L1MDa LINE L1 -1730 626 302 793 299 89 39 chrX 36052051 36052533 -126547397 - L1ME LINE L1 -5551 519 14 1125 120 150 0 chrX 36052565 36052765 -126547165 - MER30 DNA MER1_type 0 230 1 1725 150 82 28 chrX 36052798 36053152 -126546778 - THE1C LTR MaLR 0 375 3 483 280 89 6 chrX 36053472 36053629 -126546301 + MIR SINE MIR 83 252 -10 525 117 26 0 chrX 36053632 36053709 -126546221 - Tigger7 DNA MER2_type -1 2486 2408 1253 236 81 9 chrX 36053711 36054033 -126545897 - MER2 DNA MER2_type 0 345 1 557 108 98 0 chrX 36054033 36054132 -126545798 - Tigger7 DNA MER2_type -81 2410 2302 1863 151 43 3 chrX 36054128 36054432 -126545498 - Tigger7 DNA MER2_type -415 318 3 455 321 22 27 chrX 36054537 36054721 -126545209 + MER5A DNA MER1_type 7 189 0 211 343 0 15 chrX 36055378 36055445 -126544485 + L2 LINE L2 3207 3272 0 1250 249 45 82 chrX 36056548 36056597 -126543333 + LTR16C LTR ERVL 1 50 -441 1528 223 43 41 chrX 36056597 36057059 -126542871 + MLT1C LTR MaLR 1 463 -4 1250 249 45 82 chrX 36057059 36057519 -126542411 + LTR16C LTR ERVL 50 491 0 23 0 0 0 chrX 36058505 36058528 -126541402 + AT_rich Low_complexity Low_complexity 1 23 0 7759 78 6 5 chrX 36058528 36059654 -126540276 - L1MA2 LINE L1 0 6304 5177 1611 151 52 73 chrX 36062061 36062485 -126537445 - LTR37B LTR ERV1 -2 466 52 851 212 49 44 chrX 36063616 36063819 -126536111 + MER63A DNA MER1_type 7 210 0 491 304 18 0 chrX 36064847 36064959 -126534971 - MER91A DNA MER1_type -11 185 72 3578 195 69 7 chrX 36065214 36066133 -126533797 - Charlie2 DNA MER1_type -31 2831 1856 1189 186 69 75 chrX 36066123 36066456 -126533474 - Charlie2 DNA MER1_type -2531 331 1 * 826 164 5 62 chrX 36066470 36066665 -126533265 + MER53 DNA DNA 2 185 -4 226 167 0 0 chrX 36066849 36066885 -126533045 + L2 LINE L2 3269 3304 -9 485 249 301 41 chrX 36067078 36067397 -126532533 + L2 LINE L2 2706 3088 -225 228 143 0 0 chrX 36067488 36067523 -126532407 - MLT1J LTR MaLR -378 133 99 258 279 94 65 chrX 36067790 36068130 -126531800 - L2 LINE L2 -1723 1591 1242 208 135 0 0 chrX 36068138 36068175 -126531755 + (A)n Simple_repeat Simple_repeat 1 37 0 825 271 104 0 chrX 36068382 36068603 -126531327 + MIR SINE MIR 19 262 0 1302 303 39 7 chrX 36068890 36069303 -126530627 - LTR16A LTR ERVL 0 450 25 201 238 0 0 chrX 36069526 36069568 -126530362 + (TG)n Simple_repeat Simple_repeat 2 43 0 336 102 0 0 chrX 36070365 36070414 -126529516 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 223 283 33 33 chrX 36070532 36070624 -126529306 - L2 LINE L2 -12 3301 3210 853 248 182 24 chrX 36070754 36071089 -126528841 + LTR16C LTR ERVL 102 489 -2 1733 143 65 17 chrX 36072044 36072338 -126527592 + AluSx SINE Alu 1 308 -4 1097 148 24 29 chrX 36073975 36074185 -126525745 + MER3 DNA MER1_type 1 209 0 377 277 62 0 chrX 36076100 36076230 -126523700 + L2 LINE L2 1915 2052 -1262 385 342 50 46 chrX 36076407 36076667 -126523263 + L2 LINE L2 2158 2418 -896 1269 282 92 13 chrX 36076677 36077124 -126522806 - LTR16C LTR ERVL -9 482 1 425 338 24 24 chrX 36077125 36077335 -126522595 + L2 LINE L2 2422 2631 -683 4269 156 12 1 chrX 36077808 36078553 -126521377 + L1MB1 LINE L1 5409 6161 -7 472 340 29 66 chrX 36078621 36079077 -126520853 + L2 LINE L2 2825 3263 -9 180 263 0 0 chrX 36079362 36079400 -126520530 - L2 LINE L2 -398 2916 2879 1330 213 50 25 chrX 36079400 36079989 -126519941 + L1MDa LINE L1 2381 2973 -3567 752 251 12 25 chrX 36079989 36080017 -126519913 + L1MDa LINE L1 3722 3749 -2791 2198 172 48 78 chrX 36080017 36080069 -126519861 - MLT2B1 LTR ERVL 0 520 468 525 16 0 0 chrX 36080069 36080131 -126519799 + (TG)n Simple_repeat Simple_repeat 1 62 0 2198 172 48 78 chrX 36080131 36080614 -126519316 - MLT2B1 LTR ERVL -52 468 1 752 251 12 25 chrX 36080614 36080828 -126519102 + L1MDa LINE L1 3749 3961 -2579 378 183 37 0 chrX 36080851 36080933 -126518997 + MLT1G1 LTR MaLR 511 595 0 222 158 26 0 chrX 36081348 36081386 -126518544 - MIR SINE MIR -8 254 216 678 225 48 89 chrX 36081410 36081681 -126518249 - L1MDa LINE L1 -6263 277 18 525 223 202 41 chrX 36081682 36082111 -126517819 - MLT1G1 LTR MaLR -61 534 1 822 283 32 8 chrX 36082226 36082473 -126517457 + MIR SINE MIR 7 259 -3 33 0 0 0 chrX 36082523 36082556 -126517374 + AT_rich Low_complexity Low_complexity 1 33 0 1087 263 91 8 chrX 36083763 36084135 -126515795 - LTR16C LTR ERVL -18 473 71 196 238 48 32 chrX 36084692 36084755 -126515175 + MER5A DNA MER1_type 126 189 0 1842 193 18 20 chrX 36084810 36085204 -126514726 + MLT2C1 LTR ERVL 1 393 -4 180 327 85 45 chrX 36085244 36085574 -126514356 - L2 LINE L2 -737 2577 2235 21 57 0 0 chrX 36086003 36086038 -126513892 + AT_rich Low_complexity Low_complexity 1 35 0 1606 274 96 6 chrX 36086064 36086542 -126513388 + LTR33 LTR ERVL 1 521 0 722 303 51 4 chrX 36086676 36086910 -126513020 + MIR SINE MIR 17 261 -1 323 189 14 14 chrX 36087505 36087579 -126512351 - MLT1K LTR MaLR -4 584 511 257 221 39 79 chrX 36087579 36087632 -126512298 - LTR67 LTR ERVL -4 553 432 3998 140 31 16 chrX 36088484 36089184 -126510746 + MER50 LTR ERV1 1 711 -23 293 250 0 0 chrX 36090285 36090349 -126509581 - L2 LINE L2 0 3313 3250 1401 293 30 5 chrX 36090744 36091178 -126508752 + LTR16A LTR ERVL 1 445 -5 3231 121 73 32 chrX 36091850 36092437 -126507493 - LTR9 LTR ERV1 -1 611 1 392 269 0 37 chrX 36092463 36092571 -126507359 + L2 LINE L2 3169 3272 0 634 293 110 26 chrX 36093569 36093842 -126506088 + HAL1 LINE L1 855 1150 -1357 229 220 0 0 chrX 36093842 36093892 -126506038 - MLT2F LTR ERVL 0 663 614 2172 107 0 14 chrX 36093928 36094398 -126505532 + AluSp SINE Alu 1 466 0 1473 183 20 58 chrX 36094408 36094753 -126505177 - MLT2C1 LTR ERVL -65 332 1 1045 253 152 46 chrX 36094766 36095422 -126504508 + HAL1 LINE L1 1178 1903 -604 21732 180 14 13 chrX 36095530 36100254 -126499676 - L1PA11 LINE L1 -2 7610 2087 3007 61 13 0 chrX 36100254 36100645 -126499285 - L1PA7 LINE L1 -1 6153 5758 21732 180 14 13 chrX 36100645 36102733 -126497197 - L1PA11 LINE L1 -5525 2087 2 316 102 0 0 chrX 36102735 36102784 -126497146 + LTR24B LTR ERV1 521 569 -7 669 282 14 29 chrX 36102784 36103061 -126496869 + LTR24B-int LTR ERV1 2 274 -4849 1758 146 8 36 chrX 36103117 36103473 -126496457 + L1MB8 LINE L1 5833 6178 0 235 250 0 26 chrX 36103893 36103968 -126495962 + L3 LINE CR1 1464 1536 -41 462 177 203 57 chrX 36103968 36104126 -126495804 - MER5A DNA MER1_type 0 189 9 190 275 88 12 chrX 36104097 36104177 -126495753 + MIR3 SINE MIR 110 195 -13 * 29 28 0 0 chrX 36104657 36104693 -126495237 + AT_rich Low_complexity Low_complexity 1 36 0 315 248 31 37 chrX 36104760 36104921 -126495009 - HAL1 LINE L1 -102 2405 2246 288 211 40 13 chrX 36105243 36105319 -126494611 - HAL1 LINE L1 -355 2152 2075 1148 158 83 37 chrX 36105469 36105811 -126494119 - MSTD LTR MaLR 0 396 1 597 224 101 13 chrX 36106014 36106242 -126493688 - MER112 DNA MER1_type -4 256 9 401 240 131 26 chrX 36106507 36106736 -126493194 - MER97c DNA MER1_type? -2 1088 836 1902 236 60 33 chrX 36106829 36107381 -126492549 - MER97b DNA MER1_type? -483 570 4 284 244 115 62 chrX 36108949 36109158 -126490772 + L1ME4a LINE L1 5398 5617 -504 * 323 258 8 58 chrX 36109157 36109277 -126490653 + L1ME3A LINE L1 5558 5671 -499 2472 129 28 56 chrX 36109277 36109370 -126490560 - LTR47A LTR ERVL 0 452 358 5769 123 8 10 chrX 36109370 36110753 -126489177 + L1PA13 LINE L1 4775 6159 -4 2472 129 28 56 chrX 36110753 36111124 -126488806 - LTR47A LTR ERVL -94 358 1 1693 219 53 31 chrX 36111124 36111613 -126488317 + L1ME3A LINE L1 5667 6166 -4 603 299 58 13 chrX 36111624 36111935 -126487995 + L1ME4a LINE L1 5610 5934 -187 29369 33 14 1 chrX 36112701 36118731 -126481199 - L1PA2 LINE L1 -2 6153 3 22 35 0 0 chrX 36119011 36119040 -126480890 + AT_rich Low_complexity Low_complexity 1 29 0 1588 218 50 40 chrX 36119505 36120005 -126479925 - MLT1D LTR MaLR 0 505 1 187 42 0 0 chrX 36120007 36120031 -126479899 + L2 LINE L2 3243 3266 -6 26 0 0 0 chrX 36120345 36120371 -126479559 + AT_rich Low_complexity Low_complexity 1 26 0 334 236 22 11 chrX 36121252 36121341 -126478589 + MER5B DNA MER1_type 31 120 -58 258 234 13 13 chrX 36121359 36121436 -126478494 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 372 215 89 45 chrX 36121602 36121849 -126478081 - L1MC5 LINE L1 -226 7735 7478 649 256 60 12 chrX 36121869 36122119 -126477811 - L1MC5 LINE L1 -1958 5850 5589 14981 197 31 23 chrX 36122741 36123132 -126476798 + L1PA15 LINE L1 1171 1557 -5259 2341 101 48 22 chrX 36123132 36123487 -126476443 + THE1B LTR MaLR 1 364 0 14981 197 31 23 chrX 36123487 36126014 -126473916 + L1PA15 LINE L1 1557 4061 -2755 189 0 0 0 chrX 36126014 36126035 -126473895 + (TAA)n Simple_repeat Simple_repeat 1 21 0 14981 197 31 23 chrX 36126035 36128715 -126471215 + L1PA15 LINE L1 4061 6816 0 2383 214 34 6 chrX 36129267 36129772 -126470158 + LTR53 LTR ERVL 1 519 0 198 211 96 19 chrX 36129773 36129825 -126470105 + MIR SINE MIR 160 215 -47 263 232 43 0 chrX 36130012 36130081 -126469849 + MIR SINE MIR 183 254 -8 433 333 42 11 chrX 36130672 36130861 -126469069 + MIR3 SINE MIR 3 197 -11 207 330 85 9 chrX 36130872 36130978 -126468952 + MIR SINE MIR 21 134 -128 1391 282 116 19 chrX 36131030 36131732 -126468198 + L2 LINE L2 2495 3313 0 417 225 18 9 chrX 36131850 36131961 -126467969 + L1MCa LINE L1 163 274 -6290 352 187 13 0 chrX 36131967 36132042 -126467888 - L1MCb LINE L1 -5400 645 570 3723 210 137 38 chrX 36132071 36133535 -126466395 + L1MCa LINE L1 109 1862 -4702 3112 107 2 7 chrX 36133535 36133993 -126465937 + L1PB1 LINE L1 5695 6150 -1 3723 210 137 38 chrX 36133993 36134677 -126465253 + L1MCa LINE L1 1862 2477 -4087 35 0 0 0 chrX 36134707 36134742 -126465188 + AT_rich Low_complexity Low_complexity 1 35 0 7308 28 0 0 chrX 36134742 36135641 -126464289 - L1PA3 LINE L1 -3 6152 5254 5922 103 3 56 chrX 36135645 36136878 -126463052 + L1MC/D LINE L1 4465 5630 -743 1122 190 0 22 chrX 36136874 36137100 -126462830 + L1MC3 LINE L1 5487 5707 -637 * 457 203 78 8 chrX 36137099 36137227 -126462703 + L1M1 LINE L1 5 141 -7424 * 6868 160 17 22 chrX 36137216 36139492 -126460438 + L1M1 LINE L1 2929 5192 -2373 2325 109 44 0 chrX 36139492 36139872 -126460058 + L1MA2 LINE L1 5904 6304 0 6536 165 35 30 chrX 36139891 36141308 -126458622 + L1MC3 LINE L1 5693 7116 -669 1737 158 11 45 chrX 36141309 36141689 -126458241 + L1MA7 LINE L1 5915 6281 -10 880 129 12 18 chrX 36141712 36141875 -126458055 + L1MC3 LINE L1 7617 7778 -7 1731 211 36 38 chrX 36142567 36143064 -126456866 - L1ME3A LINE L1 -29 6141 5646 644 299 46 11 chrX 36143111 36143338 -126456592 + MIR SINE MIR 30 261 -1 1472 233 119 53 chrX 36143888 36144566 -126455364 + MER50 LTR ERV1 10 732 -2 206 250 0 15 chrX 36144837 36144905 -126455025 + CT-rich Low_complexity Low_complexity 2 68 0 853 285 88 21 chrX 36144920 36145530 -126454400 - L1ME4a LINE L1 -206 5915 5265 4451 71 5 2 chrX 36146078 36146670 -126453260 - L1PB2 LINE L1 -1 6150 5557 218 259 12 82 chrX 36146670 36146755 -126453175 - L2 LINE L2 -12 3260 3182 411 343 36 0 chrX 36147006 36147143 -126452787 + MIR SINE MIR 10 151 -111 2328 108 0 6 chrX 36147143 36147457 -126452473 + AluSx SINE Alu 1 312 0 388 304 89 15 chrX 36148368 36148503 -126451427 - MIR SINE MIR -113 149 5 24 32 0 0 chrX 36149424 36149455 -126450475 + AT_rich Low_complexity Low_complexity 1 31 0 467 309 77 5 chrX 36150735 36150929 -126449001 - L2 LINE L2 0 3313 3106 180 0 0 0 chrX 36151139 36151159 -126448771 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 238 200 0 15 chrX 36151821 36151886 -126448044 + L1MC4 LINE L1 6646 6709 -1333 2548 164 66 77 chrX 36151915 36152488 -126447442 - MLT1F1 LTR MaLR 0 567 1 29 0 0 0 chrX 36152601 36152630 -126447300 + AT_rich Low_complexity Low_complexity 1 29 0 466 276 12 77 chrX 36152740 36152910 -126447020 - MIR SINE MIR -92 170 12 311 358 64 32 chrX 36153007 36153194 -126446736 - L2 LINE L2 -217 3055 2863 288 0 0 0 chrX 36154237 36154269 -126445661 + (CA)n Simple_repeat Simple_repeat 2 33 0 764 257 62 5 chrX 36155998 36156219 -126443711 - MIR SINE MIR -6 256 25 2643 91 65 19 chrX 36156449 36156877 -126443053 + LTR7 LTR ERV1 1 448 -2 185 352 72 56 chrX 36156959 36156989 -126442941 - MIR SINE MIR -99 163 135 947 240 32 0 chrX 36156989 36157109 -126442821 - MER58A DNA MER1_type -2196 224 92 459 0 0 0 chrX 36157109 36157160 -126442770 + (CAATA)n Simple_repeat Simple_repeat 1 51 0 947 240 32 0 chrX 36157160 36157256 -126442674 - MER58A DNA MER1_type -2328 92 1 185 352 72 56 chrX 36157256 36157350 -126442580 - MIR SINE MIR -127 135 37 649 316 240 17 chrX 36157353 36157820 -126442110 - L2 LINE L2 -1 3312 2745 914 233 46 13 chrX 36158609 36158955 -126440975 + LTR16A LTR ERVL 25 450 0 246 171 271 0 chrX 36159514 36159584 -126440346 + MIR SINE MIR 168 256 -6 26 50 0 0 chrX 36160405 36160445 -126439485 + AT_rich Low_complexity Low_complexity 1 40 0 1125 117 35 225 chrX 36161052 36161244 -126438686 - LTR48B LTR ERV1 0 644 571 10060 30 7 156 chrX 36161244 36162874 -126437056 - SVA Other Other 0 1386 1 1125 117 35 225 chrX 36162874 36163137 -126436793 - LTR48B LTR ERV1 -73 571 260 239 96 77 58 chrX 36163152 36163204 -126436726 - LTR48B LTR ERV1 -556 88 36 411 314 140 29 chrX 36163232 36163617 -126436313 + L1ME LINE L1 4607 5034 -1112 194 54 0 54 chrX 36163630 36163667 -126436263 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 795 213 0 0 chrX 36163735 36163890 -126436040 + MER58B DNA MER1_type 187 341 0 322 294 41 64 chrX 36163923 36164141 -126435789 + L1ME LINE L1 5173 5385 -761 2143 149 18 12 chrX 36164183 36164518 -126435412 + MER1B DNA MER1_type 1 337 0 420 276 65 58 chrX 36164543 36164662 -126435268 + L1ME LINE L1 5485 5602 -519 2428 67 3 0 chrX 36164662 36164959 -126434971 - AluY SINE Alu -13 298 1 420 276 65 58 chrX 36164959 36165132 -126434798 + L1ME LINE L1 5602 5779 -342 23 0 0 0 chrX 36165183 36165206 -126434724 + AT_rich Low_complexity Low_complexity 1 23 0 1491 158 26 84 chrX 36167245 36167555 -126432375 + AluJo SINE Alu 1 292 -20 304 340 34 0 chrX 36167661 36167867 -126432063 + L1ME LINE L1 5520 5732 -389 2596 105 17 7 chrX 36167868 36168277 -126431653 + L1MA2 LINE L1 5892 6304 0 592 202 8 0 chrX 36168773 36168897 -126431033 - L1MA10 LINE L1 -7 6327 6203 22 35 0 0 chrX 36168959 36168988 -126430942 + AT_rich Low_complexity Low_complexity 1 29 0 288 148 0 0 chrX 36168998 36169052 -126430878 + L1ME4a LINE L1 6065 6118 -3 198 0 0 0 chrX 36169790 36169812 -126430118 + (TG)n Simple_repeat Simple_repeat 2 23 0 265 214 0 18 chrX 36170869 36170925 -126429005 + MIR SINE MIR 97 151 -111 1755 269 26 2 chrX 36171921 36172382 -126427548 + LTR16C LTR ERVL 2 473 -18 222 208 0 0 chrX 36172607 36172660 -126427270 + GA-rich Low_complexity Low_complexity 1 53 0 616 148 70 0 chrX 36173704 36173819 -126426111 - L2 LINE L2 0 3313 3191 508 308 76 7 chrX 36174183 36174592 -126425338 + L1M4 LINE L1 4013 4449 -1697 192 40 0 0 chrX 36174659 36174684 -126425246 + (TG)n Simple_repeat Simple_repeat 2 26 0 347 219 0 24 chrX 36174793 36174875 -126425055 + L1MC4 LINE L1 6624 6703 -1339 390 173 0 0 chrX 36176370 36176445 -126423485 + CT-rich Low_complexity Low_complexity 4 78 0 584 264 72 0 chrX 36177743 36177910 -126422020 + MIR SINE MIR 53 231 -31 888 275 196 0 chrX 36178000 36178342 -126421588 - MLT1I LTR MaLR 0 409 1 204 348 29 0 chrX 36178465 36178534 -126421396 + L2 LINE L2 2996 3066 -206 205 234 0 0 chrX 36179350 36179397 -126420533 - L2 LINE L2 -5 3308 3262 290 372 71 64 chrX 36179448 36179744 -126420186 + L2 LINE L2 2932 3229 -43 254 329 37 0 chrX 36179956 36180038 -126419892 + MIR SINE MIR 66 150 -58 1986 241 57 10 chrX 36180115 36180608 -126419322 + MLT1G1 LTR MaLR 75 590 -5 918 251 60 32 chrX 36181346 36181554 -126418376 + MIR SINE MIR 5 223 -39 2449 148 52 2 chrX 36181554 36181960 -126417970 + MSTB LTR MaLR 1 426 0 918 251 60 32 chrX 36181960 36182002 -126417928 + MIR SINE MIR 223 262 0 824 285 69 26 chrX 36182400 36182821 -126417109 - LTR16A LTR ERVL -5 445 7 575 254 133 0 chrX 36183169 36183342 -126416588 - MIR SINE MIR -18 244 49 1081 271 42 8 chrX 36184560 36184918 -126415012 + LTR33 LTR ERVL 90 459 -62 344 296 17 9 chrX 36184950 36185065 -126414865 - MER94 DNA DNA 0 134 19 527 275 70 64 chrX 36186404 36186900 -126413030 + MLT1G3 LTR MaLR 1 588 -7 436 341 98 0 chrX 36186915 36187161 -126412769 + L3b LINE CR1 1112 1381 -202 1892 142 42 12 chrX 36187673 36188005 -126411925 - MER2 DNA MER2_type -1 343 2 280 269 120 37 chrX 36189159 36189189 -126410741 + MIR SINE MIR 119 145 -117 216 97 0 0 chrX 36189189 36189220 -126410710 + (TAA)n Simple_repeat Simple_repeat 2 32 0 280 269 120 37 chrX 36189220 36189297 -126410633 + MIR SINE MIR 145 235 -27 337 276 47 24 chrX 36189447 36189574 -126410356 + MIR SINE MIR 133 262 0 1023 292 53 42 chrX 36189682 36190138 -126409792 - LTR16B LTR ERVL 0 464 4 346 247 79 46 chrX 36190684 36190950 -126408980 - LTR48 LTR ERV1 0 739 353 23 0 0 0 chrX 36191832 36191855 -126408075 + AT_rich Low_complexity Low_complexity 1 23 0 314 293 83 6 chrX 36192087 36192244 -126407686 + L1MC4a LINE L1 5694 5862 -1946 4237 83 76 12 chrX 36192716 36193321 -126406609 - LTR9B LTR ERV1 0 644 1 180 179 0 0 chrX 36193819 36193858 -126406072 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 36193904 36193926 -126406004 + AT_rich Low_complexity Low_complexity 1 22 0 360 311 84 44 chrX 36194255 36194528 -126405402 + L1MEd LINE L1 599 882 -5237 28850 113 14 58 chrX 36194574 36201009 -126398921 + L1PA7 LINE L1 12 6147 -7 193 0 61 30 chrX 36201012 36201045 -126398885 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 443 312 77 29 chrX 36201058 36201603 -126398327 + L1MEd LINE L1 993 1563 -4747 1363 200 56 7 chrX 36201605 36201890 -126398040 - MLT1E LTR MaLR 0 593 295 387 273 19 7 chrX 36202081 36202235 -126397695 + L1MEd LINE L1 3286 3441 -2688 672 248 96 39 chrX 36202279 36202804 -126397126 - MER34B LTR ERV1 0 585 5 1548 259 30 24 chrX 36202821 36203447 -126396483 + L1MEd LINE L1 3508 4137 -1992 1744 157 3 65 chrX 36204842 36205166 -126394764 - AluJb SINE Alu -8 304 1 235 195 0 134 chrX 36205242 36205324 -126394606 + MER91B DNA MER1_type 9 79 -111 441 0 0 0 chrX 36205655 36205704 -126394226 + (TG)n Simple_repeat Simple_repeat 2 50 0 509 199 35 115 chrX 36205868 36206094 -126393836 + MLT1D LTR MaLR 1 208 -297 3037 193 40 19 chrX 36206169 36206750 -126393180 - MLT1E LTR MaLR 0 593 1 1848 113 30 0 chrX 36206772 36206917 -126393013 + L1MA9 LINE L1 6002 6141 -171 342 0 0 0 chrX 36206917 36206955 -126392975 + (CA)n Simple_repeat Simple_repeat 1 38 0 1848 113 30 0 chrX 36206955 36207109 -126392821 + L1MA9 LINE L1 6141 6310 -2 262 355 0 0 chrX 36207116 36207178 -126392752 + MER91B DNA MER1_type 128 189 -1 294 304 39 10 chrX 36207891 36207993 -126391937 + L2 LINE L2 2911 3015 -257 232 286 11 0 chrX 36208148 36208239 -126391691 - L1MC4 LINE L1 -11 8031 7940 412 317 60 26 chrX 36208333 36208715 -126391215 - L1MC5 LINE L1 -197 7764 7370 394 233 62 27 chrX 36208751 36208897 -126391033 - L1MC4 LINE L1 -787 8066 7916 1453 257 94 15 chrX 36209056 36209511 -126390419 - LTR16C LTR ERVL 0 491 1 892 257 239 19 chrX 36209513 36210390 -126389540 - L1MC4 LINE L1 -900 7719 6843 246 281 38 50 chrX 36210390 36210520 -126389410 - L1PA8A LINE L1 -305 5826 5697 321 26 0 0 chrX 36210520 36210558 -126389372 + (TG)n Simple_repeat Simple_repeat 1 38 0 246 281 38 50 chrX 36210558 36210587 -126389343 - L1PA8A LINE L1 -434 5697 5669 348 278 110 43 chrX 36210667 36211059 -126388871 - L1MC4 LINE L1 -1945 5012 4595 * 1564 261 68 38 chrX 36211058 36211590 -126388340 + L1M4b LINE L1 29 576 -6283 2080 235 83 42 chrX 36211590 36212249 -126387681 - L1MC4 LINE L1 -5321 1538 853 278 194 16 16 chrX 36212260 36212322 -126387608 + MLT1H1 LTR MaLR 69 130 -425 622 238 108 30 chrX 36212339 36212614 -126387316 + MLT1H1 LTR MaLR 244 553 -2 1682 151 0 74 chrX 36212780 36213104 -126386826 + AluJb SINE Alu 1 300 -12 364 358 85 24 chrX 36213518 36213848 -126386082 - L1M4 LINE L1 -1220 4926 4577 309 308 62 0 chrX 36213859 36214067 -126385863 - L1M4 LINE L1 -1700 4446 4226 277 300 25 0 chrX 36214122 36214242 -126385688 - L1M3 LINE L1 -707 5476 5354 21 0 0 0 chrX 36214336 36214357 -126385573 + AT_rich Low_complexity Low_complexity 1 21 0 237 128 0 0 chrX 36214421 36214460 -126385470 + MLT1B LTR MaLR 58 96 -294 329 269 68 10 chrX 36214463 36214771 -126385159 - L1M3 LINE L1 -2929 3217 2892 420 287 34 72 chrX 36215287 36215936 -126383994 - L1M3 LINE L1 -3328 2818 2195 283 323 24 40 chrX 36216314 36216565 -126383365 - HAL1 LINE L1 -797 1710 1464 305 329 82 29 chrX 36216736 36216906 -126383024 + L2 LINE L2 190 368 -2946 555 306 62 47 chrX 36217909 36218295 -126381635 + LTR16C LTR ERVL 83 474 -17 322 248 73 37 chrX 36218896 36219005 -126380925 + MER5A DNA MER1_type 77 189 0 4333 125 47 26 chrX 36219763 36220538 -126379392 - L1PA16 LINE L1 -6 6160 5370 210 71 0 0 chrX 36220817 36220845 -126379085 + (TG)n Simple_repeat Simple_repeat 2 29 0 442 223 23 0 chrX 36220969 36221099 -126378831 + (CATATA)n Simple_repeat Simple_repeat 3 135 0 248 168 50 12 chrX 36221335 36221496 -126378434 + (TA)n Simple_repeat Simple_repeat 1 167 0 628 289 28 41 chrX 36221878 36222054 -126377876 + LTR16A1 LTR ERVL 171 343 -114 2950 191 4 11 chrX 36222054 36222598 -126377332 + MLT1F LTR MaLR 1 540 -2 628 289 28 41 chrX 36222598 36222712 -126377218 + LTR16A1 LTR ERVL 343 457 0 677 262 74 15 chrX 36222714 36222916 -126377014 + MIR SINE MIR 49 262 0 2187 110 0 7 chrX 36223865 36224165 -126375765 - AluSx SINE Alu -14 298 1 679 275 58 47 chrX 36224673 36224761 -126375169 + L1MC4a LINE L1 5518 5603 -2205 1292 264 149 7 chrX 36224761 36225216 -126374714 - LTR33 LTR ERVL -1 520 1 679 275 58 47 chrX 36225216 36225370 -126374560 + L1MC4a LINE L1 5603 5768 -2040 1436 183 90 17 chrX 36225370 36225660 -126374270 + AluJo SINE Alu 1 311 -1 679 275 58 47 chrX 36225660 36225758 -126374172 + L1MC4a LINE L1 5768 5863 -1945 923 189 44 0 chrX 36226960 36227140 -126372790 + MER5A DNA MER1_type 2 189 0 267 316 59 52 chrX 36227163 36227299 -126372631 + MER5A DNA MER1_type 1 137 -52 208 292 26 131 chrX 36228705 36228972 -126370958 - L2 LINE L2 -3 3310 3072 9178 175 27 11 chrX 36230398 36232087 -126367843 + L1M1 LINE L1 13 1729 -5836 541 303 51 127 chrX 36232092 36233156 -126366774 + L2 LINE L2 2290 3267 -5 1749 60 38 17 chrX 36233398 36233633 -126366297 + L1PA8A LINE L1 5892 6131 0 22 0 0 0 chrX 36234289 36234311 -126365619 + AT_rich Low_complexity Low_complexity 1 22 0 229 299 11 46 chrX 36234398 36234485 -126365445 - MIR SINE MIR -60 202 119 240 374 112 5 chrX 36234582 36234769 -126365161 + L3b LINE CR1 1132 1338 -245 456 304 29 108 chrX 36234788 36235028 -126364902 - L2 LINE L2 -18 3254 3034 187 338 75 38 chrX 36235064 36235144 -126364786 + L2 LINE L2 3192 3274 -39 2424 157 34 2 chrX 36235251 36235666 -126364264 - MSTA LTR MaLR 0 428 1 9819 157 11 11 chrX 36235666 36237174 -126362756 - MSTA-int LTR MaLR 0 1651 140 2034 80 0 45 chrX 36237174 36237460 -126362470 + AluY SINE Alu 35 307 -4 9819 157 11 11 chrX 36237460 36237601 -126362329 - MSTA-int LTR MaLR -1511 140 1 2317 154 29 12 chrX 36237601 36238022 -126361908 - MSTA LTR MaLR 0 428 1 198 0 0 0 chrX 36239119 36239141 -126360789 + (TG)n Simple_repeat Simple_repeat 1 22 0 794 303 67 0 chrX 36240216 36240454 -126359476 - MIR SINE MIR 0 262 9 594 134 0 0 chrX 36240561 36240643 -126359287 + AluS SINE Alu 3 84 -228 11980 92 10 0 chrX 36240686 36241352 -126358578 - L1PA7 LINE L1 -6 6148 5490 1984 116 0 0 chrX 36241352 36241620 -126358310 - AluSg1 SINE Alu -7 302 35 11980 92 10 0 chrX 36241620 36243431 -126356499 - L1PA7 LINE L1 -664 5490 3663 7562 96 7 0 chrX 36243431 36244553 -126355377 - L1PA7 LINE L1 -3376 2770 1641 9465 171 17 13 chrX 36244700 36246639 -126353291 + L1P LINE L1 2787 4733 -1413 773 86 43 0 chrX 36246916 36247033 -126352897 + L1PA12 LINE L1 6047 6168 0 1079 249 23 34 chrX 36247454 36247808 -126352122 - MLT1E2 LTR MaLR -276 350 1 724 258 47 9 chrX 36247814 36248027 -126351903 - L2 LINE L2 -724 2590 2370 278 211 0 0 chrX 36248034 36248091 -126351839 - MLT1I LTR MaLR -7 402 346 507 96 0 0 chrX 36248121 36248194 -126351736 - L1PB4 LINE L1 -7 6149 6077 761 291 104 13 chrX 36248660 36248976 -126350954 - MLT1I LTR MaLR -2 407 63 4345 296 70 25 chrX 36249027 36250539 -126349391 - L2 LINE L2 -942 2372 793 262 288 72 9 chrX 36250626 36250737 -126349193 + MIR SINE MIR 84 201 -61 476 224 0 0 chrX 36250737 36250865 -126349065 + FRAM SINE Alu 62 189 0 181 348 169 0 chrX 36251686 36251775 -126348155 + MIR SINE MIR 24 127 -81 31 68 0 0 chrX 36252036 36252095 -126347835 + AT_rich Low_complexity Low_complexity 1 59 0 2375 11 0 0 chrX 36252626 36252896 -126347034 - L1PA2 LINE L1 -1 6154 5885 228 35 0 0 chrX 36252898 36252927 -126347003 + L1P LINE L1 5063 5091 -1055 323 164 60 15 chrX 36253482 36253549 -126346381 - LTR67 LTR ERVL -4 553 484 205 272 85 66 chrX 36253941 36254122 -126345808 + MIR3 SINE MIR 12 201 -7 799 285 66 31 chrX 36254467 36254786 -126345144 + MLT1I LTR MaLR 80 409 0 5833 116 35 0 chrX 36255947 36257033 -126342897 - L1PA15 LINE L1 -6 6159 5080 977 311 13 19 chrX 36257317 36257787 -126342143 - L1ME LINE L1 -349 5821 5355 197 364 8 25 chrX 36258108 36258226 -126341704 + MIR SINE MIR 9 124 -138 187 317 170 15 chrX 36258244 36258585 -126341345 + L2 LINE L2 626 1019 -2295 943 179 6 0 chrX 36258748 36258904 -126341026 + MER5A DNA MER1_type 1 157 -32 315 306 67 22 chrX 36258988 36259122 -126340808 - MER5A DNA MER1_type -49 140 1 335 324 89 19 chrX 36259417 36259732 -126340198 + L2 LINE L2 1826 2162 -1152 4364 165 12 48 chrX 36259766 36260872 -126339058 - L1MB7 LINE L1 -19 6663 5588 4902 100 8 5 chrX 36260894 36261844 -126338086 + HERVL-B3 LTR ERVL 4666 5654 0 2070 191 28 74 chrX 36261844 36262425 -126337505 + MLT2B3 LTR ERVL 1 554 0 9753 219 28 17 chrX 36262427 36265241 -126334689 - L1MB7 LINE L1 -1086 5558 2713 285 258 0 0 chrX 36265216 36265282 -126334648 + MLT1-int LTR MaLR 671 736 -635 * 4789 215 54 27 chrX 36265384 36266643 -126333287 - L1MB7 LINE L1 -5249 1293 1 278 302 19 38 chrX 36266686 36266792 -126333138 + L2 LINE L2 2297 2400 -914 28 29 0 0 chrX 36267888 36267923 -126332007 + AT_rich Low_complexity Low_complexity 1 35 0 182 37 37 0 chrX 36267972 36267999 -126331931 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2036 235 123 5 chrX 36268257 36268844 -126331086 - L1ME3 LINE L1 0 6162 5507 264 111 0 0 chrX 36269284 36269329 -126330601 + (TC)n Simple_repeat Simple_repeat 1 45 0 659 243 45 28 chrX 36271173 36271350 -126328580 + MER5A DNA MER1_type 9 188 -1 192 77 0 0 chrX 36271452 36271478 -126328452 + (T)n Simple_repeat Simple_repeat 1 26 0 4760 209 114 30 chrX 36272158 36272266 -126327664 + L1MDa LINE L1 19 117 -6423 2461 89 0 3 chrX 36272266 36272580 -126327350 + AluSq SINE Alu 1 313 0 4760 209 114 30 chrX 36272580 36273893 -126326037 + L1MDa LINE L1 117 1874 -4666 2053 215 40 7 chrX 36273903 36274498 -126325432 + L1MD2 LINE L1 5695 6358 -1 261 0 0 0 chrX 36275823 36275852 -126324078 + (TG)n Simple_repeat Simple_repeat 1 29 0 375 105 0 0 chrX 36275852 36275909 -126324021 + (GA)n Simple_repeat Simple_repeat 2 58 0 258 375 25 17 chrX 36276270 36276390 -126323540 + L2 LINE L2 3152 3272 0 2958 218 51 19 chrX 36276776 36277527 -126322403 + L1PA16 LINE L1 3314 4088 -2058 * 44041 36 6 1 chrX 36277524 36283650 -126316280 + L1PA3 LINE L1 1 6152 -3 279 0 0 0 chrX 36283653 36283684 -126316246 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5927 175 26 2 chrX 36283725 36285761 -126314169 + L1PA16 LINE L1 4074 6157 -9 411 254 65 53 chrX 36285820 36285989 -126313941 - HAL1 LINE L1 -1323 1184 1014 1478 272 79 10 chrX 36286884 36287365 -126312565 - LTR33 LTR ERVL -7 514 1 2700 39 0 0 chrX 36287804 36288114 -126311816 + AluY SINE Alu 1 310 -1 1431 206 64 0 chrX 36288430 36288774 -126311156 - MER69 DNA AcHobo 0 2526 2161 1402 298 95 4 chrX 36288769 36289243 -126310687 - MER69 DNA AcHobo -708 518 2 * 395 270 66 66 chrX 36289470 36289607 -126310323 - L2 LINE L2 0 3272 3136 528 287 89 25 chrX 36290666 36290868 -126309062 + MIR SINE MIR 48 262 0 235 357 0 0 chrX 36291471 36291527 -126308403 + L2 LINE L2 3205 3260 -12 183 80 0 0 chrX 36291529 36291554 -126308376 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 209 293 4 21 chrX 36291876 36291956 -126307974 + MER5A DNA MER1_type 2 91 -98 28 29 0 0 chrX 36292816 36292851 -126307079 + AT_rich Low_complexity Low_complexity 1 35 0 621 323 26 18 chrX 36292851 36293080 -126306850 - MIR SINE MIR -30 232 2 239 221 12 0 chrX 36293280 36293366 -126306564 + (TA)n Simple_repeat Simple_repeat 1 87 0 380 276 16 0 chrX 36293644 36293755 -126306175 - LTR16A LTR ERVL -96 354 242 470 146 19 39 chrX 36293755 36293858 -126306072 + MER53 DNA DNA 1 101 -88 503 285 29 0 chrX 36293891 36294028 -126305902 - LTR16A LTR ERVL -214 236 96 5034 206 31 11 chrX 36294304 36295316 -126304614 + MER45B DNA AcHobo 1 1032 -8 723 290 0 11 chrX 36295826 36296009 -126303921 - MIR SINE MIR -41 221 41 698 233 54 66 chrX 36296127 36296385 -126303545 + Charlie2 DNA MER1_type 76 330 -2532 * 1311 243 51 9 chrX 36296373 36296801 -126303129 + Charlie2 DNA MER1_type 1853 2298 -564 4797 89 9 12 chrX 36296801 36297466 -126302464 + L1PA10 LINE L1 5390 6052 -116 960 201 211 27 chrX 36297472 36297959 -126301971 + Charlie2 DNA MER1_type 2282 2858 -4 414 257 125 13 chrX 36298443 36298595 -126301335 + MIR SINE MIR 55 223 -39 314 286 68 15 chrX 36298693 36298826 -126301104 - MARNA DNA Mariner -77 509 370 765 181 112 32 chrX 36298852 36299040 -126300890 - L1MD2 LINE L1 -11 6348 6146 230 261 58 35 chrX 36299210 36299436 -126300494 + L1M4 LINE L1 5096 5326 -820 280 254 0 0 chrX 36299465 36299532 -126300398 - L1ME LINE L1 -4809 1452 1386 2686 92 0 5 chrX 36299612 36299977 -126299953 - L1PB1 LINE L1 -1 6150 5787 348 24 0 0 chrX 36299977 36300018 -126299912 + (TG)n Simple_repeat Simple_repeat 2 42 0 14790 161 85 7 chrX 36300024 36304170 -126295760 - L1PBa LINE L1 -2392 4470 1 1548 275 77 44 chrX 36304179 36305453 -126294477 - L1ME LINE L1 -4747 1333 51 210 302 0 0 chrX 36305761 36305824 -126294106 - MIR SINE MIR 0 262 200 2353 224 35 26 chrX 36305875 36306597 -126293333 - L1M4 LINE L1 -1538 4608 3881 216 214 0 0 chrX 36307223 36307265 -126292665 + T-rich Low_complexity Low_complexity 1 42 0 818 220 28 0 chrX 36307436 36307618 -126292312 - MER5A DNA MER1_type -2 187 1 320 332 38 38 chrX 36307628 36307810 -126292120 + MIR SINE MIR 33 212 -50 1580 155 15 4 chrX 36309220 36309484 -126290446 + AluJo SINE Alu 43 309 -3 297 109 0 0 chrX 36309632 36309678 -126290252 + (CA)n Simple_repeat Simple_repeat 1 46 0 862 282 194 24 chrX 36309697 36310115 -126289815 - L2 LINE L2 0 3313 2825 243 61 0 0 chrX 36310115 36310148 -126289782 + (TG)n Simple_repeat Simple_repeat 1 33 0 2029 247 138 25 chrX 36310756 36311278 -126288652 + MLT1G LTR MaLR 10 590 0 431 326 87 26 chrX 36311672 36312288 -126287642 + L1ME2 LINE L1 5258 5906 -258 392 206 6 120 chrX 36312777 36312952 -126286978 - L1ME4a LINE L1 0 6121 5967 336 294 68 25 chrX 36313082 36313245 -126286685 - L1ME4a LINE L1 -2336 5472 5303 385 312 89 49 chrX 36313508 36314036 -126285894 - L1ME4a LINE L1 -1185 4961 4416 864 293 95 8 chrX 36314458 36314827 -126285103 - MLT1I LTR MaLR -8 401 1 1033 135 36 26 chrX 36317552 36317744 -126282186 + THE1C LTR MaLR 180 373 -2 1001 244 56 30 chrX 36317745 36318011 -126281919 - MLT1H1 LTR MaLR -282 273 1 305 334 103 23 chrX 36318048 36318350 -126281580 + L2 LINE L2 1798 2123 -1191 1754 190 24 0 chrX 36519301 36519633 -126080297 - MER58B DNA MER1_type -1 340 1 783 293 98 0 chrX 36519885 36520131 -126079799 + L2 LINE L2 2510 2779 -535 1478 270 23 3 chrX 36520170 36520559 -126079371 - LTR16A LTR ERVL -38 412 16 1343 265 58 44 chrX 36520574 36520736 -126079194 + L2 LINE L2 2828 2986 -327 2562 70 0 0 chrX 36520736 36521038 -126078892 - AluY SINE Alu -9 302 1 1343 265 58 44 chrX 36521038 36521354 -126078576 + L2 LINE L2 2986 3313 0 289 193 0 18 chrX 36522609 36522666 -126077264 - LTR67 LTR ERVL -400 157 102 226 298 106 0 chrX 36522843 36522937 -126076993 - L2 LINE L2 0 3272 3169 218 365 0 0 chrX 36523550 36523635 -126076295 - MIR SINE MIR -92 170 86 286 292 28 0 chrX 36523933 36524005 -126075925 + (CATG)n Simple_repeat Simple_repeat 1 74 0 2896 143 0 19 chrX 36524192 36524673 -126075257 - L1PA16 LINE L1 -6 6160 5689 21 0 0 0 chrX 36524994 36525015 -126074915 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 0 0 chrX 36525340 36525387 -126074543 + L2 LINE L2 3138 3184 -88 425 253 65 85 chrX 36526398 36526849 -126073081 - MLT1H LTR MaLR 0 595 114 256 273 20 50 chrX 36527096 36527195 -126072735 + MIR SINE MIR 83 178 -84 23 33 0 0 chrX 36528211 36528241 -126071689 + AT_rich Low_complexity Low_complexity 1 30 0 492 48 0 0 chrX 36528262 36528325 -126071605 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 332 293 75 10 chrX 36528579 36528707 -126071223 - MIR SINE MIR -45 163 25 380 333 97 0 chrX 36529395 36529560 -126070370 + MIR SINE MIR 46 226 -36 2681 98 25 3 chrX 36531893 36532260 -126067670 - THE1C LTR MaLR 0 375 1 3984 90 7 7 chrX 36532263 36532831 -126067099 - THE1C-int LTR MaLR -3 1577 1010 11358 196 13 4 chrX 36532839 36535986 -126063944 - L1P5 LINE L1 -382 6485 3309 * 40859 47 7 0 chrX 36535976 36542091 -126057839 - L1PA4 LINE L1 -1 6154 1 5448 168 58 19 chrX 36542095 36543544 -126056386 - L1P5 LINE L1 -3543 3319 1813 3618 222 204 8 chrX 36543528 36544852 -126055078 - L1P5 LINE L1 -5275 1588 6 * 2031 93 25 140 chrX 36544874 36545323 -126054607 - THE1C-int LTR MaLR -1183 397 1 2218 87 34 48 chrX 36545324 36545703 -126054227 - THE1C LTR MaLR -1 374 1 351 0 0 0 chrX 36546041 36546080 -126053850 + (CA)n Simple_repeat Simple_repeat 2 40 0 552 254 134 17 chrX 36547676 36547908 -126052022 + L1MC4a LINE L1 5574 5832 -1976 1404 280 72 18 chrX 36548551 36549008 -126050922 + LTR16C LTR ERVL 8 489 -2 316 111 16 32 chrX 36549106 36549169 -126050761 - LTR33A LTR ERVL -20 503 442 905 211 6 0 chrX 36549178 36549349 -126050581 - MLT1D LTR MaLR 0 505 334 2920 269 57 48 chrX 36549360 36550711 -126049219 - L1M4 LINE L1 -5179 1363 1 2376 297 46 57 chrX 36550995 36552292 -126047638 - ERVL LTR ERVL -385 5379 4097 1882 169 3 0 chrX 36552508 36552804 -126047126 + AluJb SINE Alu 1 297 -15 425 226 70 26 chrX 36552868 36552983 -126046947 - MIR SINE MIR -11 251 132 2338 132 34 50 chrX 36553193 36553631 -126046299 - Tigger2a DNA MER2_type 0 434 4 432 352 97 5 chrX 36553677 36553893 -126046037 + MIR SINE MIR 20 255 -7 712 98 0 0 chrX 36555114 36555216 -126044714 + FRAM SINE Alu 74 175 -1 1195 171 60 32 chrX 36556012 36556293 -126043637 - MLT1B LTR MaLR -101 289 1 358 226 0 43 chrX 36556305 36556398 -126043532 - MIR SINE MIR -55 207 119 2214 216 40 12 chrX 36557012 36557633 -126042297 - L1MD2 LINE L1 0 6242 5620 685 289 44 4 chrX 36557634 36558080 -126041850 - L1MDb LINE L1 -5860 549 7 255 322 84 42 chrX 36558755 36558898 -126041032 - MIR SINE MIR -94 168 20 222 400 35 9 chrX 36558904 36559019 -126040911 - L2 LINE L2 -19 3253 3136 362 292 10 10 chrX 36559597 36559693 -126040237 + MIR SINE MIR 38 133 -75 1176 216 100 43 chrX 36559705 36559910 -126040020 - MLT1D LTR MaLR -113 392 200 2431 80 3 0 chrX 36559910 36560209 -126039721 + AluSp SINE Alu 1 300 -13 1176 216 100 43 chrX 36560209 36560374 -126039556 - MLT1D LTR MaLR -305 200 1 703 273 115 18 chrX 36560374 36560652 -126039278 + MER69 DNA AcHobo 278 582 -1944 * 1399 198 136 9 chrX 36560637 36561087 -126038843 + MER69 DNA AcHobo 2010 2516 -10 2589 118 12 16 chrX 36562828 36563252 -126036678 - MER39 LTR ERV1 0 707 286 792 164 22 20 chrX 36563253 36563516 -126036414 - LTR32 LTR ERVL 0 471 152 277 195 115 23 chrX 36564225 36564312 -126035618 - MIR SINE MIR -19 243 149 987 243 67 80 chrX 36564555 36565081 -126034849 - LTR33 LTR ERVL 0 521 3 342 189 31 1 chrX 36565342 36565430 -126034500 - MLT1H LTR MaLR -11 531 453 583 262 73 31 chrX 36565506 36565774 -126034156 - MLT1H LTR MaLR -216 333 14 270 0 0 0 chrX 36566202 36566232 -126033698 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 291 28 0 0 chrX 36566231 36566267 -126033663 + (TA)n Simple_repeat Simple_repeat 1 36 0 194 250 0 91 chrX 36567284 36567372 -126032558 - L2 LINE L2 -5 3308 3229 * 214 331 45 11 chrX 36567353 36567469 -126032461 - MIR SINE MIR -71 137 10 299 256 42 3 chrX 36567510 36567622 -126032308 - MIR SINE MIR -63 145 37 279 93 0 0 chrX 36567948 36567991 -126031939 + (GA)n Simple_repeat Simple_repeat 1 43 0 284 254 109 45 chrX 36568648 36568758 -126031172 + MLT1J LTR MaLR 256 372 -139 207 0 0 0 chrX 36569358 36569381 -126030549 + (A)n Simple_repeat Simple_repeat 1 23 0 393 326 34 0 chrX 36569482 36569629 -126030301 - L3 LINE CR1 -10 1567 1416 308 186 114 0 chrX 36570082 36570152 -126029778 + L2 LINE L2 3236 3313 0 505 256 169 5 chrX 36570275 36570578 -126029352 - LTR33 LTR ERVL -12 509 110 1226 334 55 28 chrX 36570659 36571276 -126028654 - L3 LINE CR1 -344 1233 600 342 226 21 21 chrX 36571375 36571468 -126028462 + MER103 DNA DNA 1 93 -73 601 275 65 44 chrX 36571610 36571839 -126028091 + MIR SINE MIR 29 262 0 313 291 27 18 chrX 36572026 36572136 -126027794 + L1ME LINE L1 5276 5386 -760 545 303 6 12 chrX 36572252 36572414 -126027516 - MIR SINE MIR -1 261 101 313 235 15 0 chrX 36572428 36572496 -126027434 + L1ME LINE L1 5557 5625 -496 1306 277 73 15 chrX 36572512 36572923 -126027007 + LTR16A LTR ERVL 16 450 0 238 241 37 0 chrX 36572991 36573045 -126026885 + MLT1J2 LTR MaLR 254 309 -141 639 263 67 50 chrX 36573066 36573424 -126026506 + L1MCc LINE L1 21 384 -6039 1726 243 60 19 chrX 36573549 36574497 -126025433 + L1MCc LINE L1 814 1910 -4851 832 261 70 7 chrX 36574510 36574797 -126025133 - MLT1D LTR MaLR -2 503 199 1214 256 46 46 chrX 36574806 36575337 -126024593 + L1MCc LINE L1 2658 3188 -3753 2378 92 0 13 chrX 36575337 36575652 -126024278 + AluSq SINE Alu 1 311 -2 1214 256 46 46 chrX 36575652 36575725 -126024205 + L1MCc LINE L1 3188 3260 -3681 1996 172 42 3 chrX 36575725 36576080 -126023850 + MER93b LTR ERV1 5 373 0 1214 256 46 46 chrX 36576080 36576190 -126023740 + L1MCc LINE L1 3260 3336 -3605 541 250 73 0 chrX 36576363 36576527 -126023403 + L1MD3 LINE L1 7009 7184 -811 603 240 0 0 chrX 36576542 36576667 -126023263 + MLT1F1 LTR MaLR 1 125 -442 3076 173 39 2 chrX 36576668 36577229 -126022701 + L1MD3 LINE L1 7400 7981 -14 2072 93 23 33 chrX 36577231 36577531 -126022399 - AluY SINE Alu -14 297 1 315 250 42 10 chrX 36577569 36577665 -126022265 + MLT1J2 LTR MaLR 344 442 -8 27 49 0 0 chrX 36577847 36577888 -126022042 + AT_rich Low_complexity Low_complexity 1 41 0 255 259 9 103 chrX 36577991 36578107 -126021823 - MER102a DNA MER1_type -6 324 220 22 0 0 0 chrX 36578533 36578555 -126021375 + AT_rich Low_complexity Low_complexity 1 22 0 272 289 58 10 chrX 36578602 36578706 -126021224 - MIR SINE MIR -141 121 13 21 0 0 0 chrX 36578896 36578917 -126021013 + AT_rich Low_complexity Low_complexity 1 21 0 505 291 111 49 chrX 36578970 36579214 -126020716 - MIR SINE MIR -2 260 2 909 252 29 0 chrX 36580090 36580300 -126019630 + MIR SINE MIR 43 258 -4 1885 146 7 3 chrX 36580573 36580861 -126019069 + AluJb SINE Alu 1 289 -23 231 308 0 26 chrX 36580938 36581016 -126018914 - L2 LINE L2 -61 3252 3177 549 268 252 4 chrX 36581024 36581278 -126018652 + L2 LINE L2 2827 3143 -170 3624 259 40 14 chrX 36581305 36582274 -126017656 - L2 LINE L2 -508 2806 1813 1151 281 97 21 chrX 36582274 36582709 -126017221 - L2 LINE L2 -2846 468 1 787 167 0 8 chrX 36583069 36583195 -126016735 - FLAM_A SINE Alu -8 125 1 186 133 0 0 chrX 36583921 36583951 -126015979 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1334 235 55 48 chrX 36584242 36584676 -126015254 - MLT1J1 LTR MaLR -2 444 8 233 155 17 0 chrX 36586007 36586065 -126013865 + GA-rich Low_complexity Low_complexity 2 60 0 252 0 0 0 chrX 36587411 36587439 -126012491 + (T)n Simple_repeat Simple_repeat 1 28 0 1304 306 47 10 chrX 36588119 36588524 -126011406 + LTR16C LTR ERVL 71 490 -1 615 252 96 28 chrX 36588915 36589210 -126010720 + LTR33 LTR ERVL 173 521 0 372 277 6 77 chrX 36589210 36589388 -126010542 + MIR SINE MIR 25 189 -73 1205 176 0 0 chrX 36589803 36589991 -126009939 + MER5A DNA MER1_type 2 189 0 1312 228 42 9 chrX 36590163 36590601 -126009329 - MLT1E LTR MaLR 0 593 46 1319 227 50 34 chrX 36590763 36591198 -126008732 - MLT1-int LTR MaLR -766 605 37 402 355 35 12 chrX 36591716 36591888 -126008042 + MER5B DNA MER1_type 1 176 -2 320 152 15 0 chrX 36592090 36592156 -126007774 + CT-rich Low_complexity Low_complexity 3 69 0 1852 200 42 97 chrX 36592923 36593527 -126006403 - L1ME1 LINE L1 -7 6159 5592 4868 104 5 36 chrX 36593527 36594280 -126005650 + L1PB3 LINE L1 5420 6149 -5 1852 200 42 97 chrX 36594280 36594336 -126005594 - L1ME1 LINE L1 -574 5592 5535 346 273 34 0 chrX 36594339 36594427 -126005503 + L1MC4 LINE L1 6612 6702 -1340 293 0 27 0 chrX 36594447 36594484 -126005446 + (GA)n Simple_repeat Simple_repeat 2 39 0 1644 156 0 56 chrX 36594510 36594798 -126005132 - AluJo SINE Alu -40 272 1 393 193 31 76 chrX 36594800 36594961 -126004969 - L1ME1 LINE L1 -682 5484 5336 * 993 197 76 90 chrX 36594940 36595386 -126004544 - L1ME1 LINE L1 -2539 3607 3168 267 329 24 0 chrX 36595514 36595596 -126004334 + LTR16C LTR ERVL 408 491 0 240 318 111 40 chrX 36595723 36595849 -126004081 + L2 LINE L2 3138 3272 0 1255 172 152 0 chrX 36595966 36596244 -126003686 + AluJb SINE Alu 3 317 0 833 136 0 0 chrX 36596458 36596576 -126003354 + FLAM_C SINE Alu 1 118 -15 24 32 0 0 chrX 36596576 36596607 -126003323 + AT_rich Low_complexity Low_complexity 1 31 0 745 261 40 13 chrX 36596891 36597117 -126002813 + MIR SINE MIR 3 234 -28 1425 162 99 51 chrX 36597590 36597945 -126001985 - MLT1A1 LTR MaLR 0 396 1 231 114 0 0 chrX 36599484 36599519 -126000411 + (TG)n Simple_repeat Simple_repeat 2 36 0 411 310 37 21 chrX 36599521 36599708 -126000222 + MIR SINE MIR 11 200 -62 706 340 49 4 chrX 36599708 36599955 -125999975 - MIR SINE MIR -3 259 2 998 186 5 26 chrX 36600341 36600534 -125999396 - MER5A DNA MER1_type 0 189 1 715 214 77 6 chrX 36600544 36600712 -125999218 - MER58A DNA MER1_type -1 223 44 327 333 108 22 chrX 36600769 36601084 -125998846 - L2 LINE L2 -1175 2139 1798 1001 244 56 30 chrX 36601121 36601387 -125998543 + MLT1H1 LTR MaLR 1 273 -282 1033 135 36 26 chrX 36601388 36601580 -125998350 - THE1C LTR MaLR -2 373 180 864 293 95 8 chrX 36604305 36604674 -125995256 + MLT1I LTR MaLR 1 401 -8 385 312 89 49 chrX 36605096 36605624 -125994306 + L1ME4a LINE L1 4416 4961 -1185 336 294 68 25 chrX 36605887 36606050 -125993880 + L1ME4a LINE L1 5303 5472 -2336 392 206 6 120 chrX 36606180 36606355 -125993575 + L1ME4a LINE L1 5967 6121 0 431 326 87 26 chrX 36606844 36607460 -125992470 - L1ME2 LINE L1 -258 5975 5327 2029 247 138 25 chrX 36607854 36608376 -125991554 - MLT1G LTR MaLR 0 590 10 1816 248 48 13 chrX 36609092 36609633 -125990297 - L1ME2 LINE L1 -2332 3883 3324 6928 245 37 39 chrX 36609636 36610060 -125989870 - L1ME2 LINE L1 -2944 3271 2848 2812 10 0 0 chrX 36610060 36610366 -125989564 - AluYa5 SINE Alu -5 306 1 6928 245 37 39 chrX 36610366 36610673 -125989257 - L1ME2 LINE L1 -3367 2848 2542 2101 112 0 14 chrX 36610673 36610988 -125988942 + AluSx SINE Alu 1 311 0 6928 245 37 39 chrX 36610988 36612809 -125987121 - L1ME2 LINE L1 -3673 2542 768 2871 70 8 3 chrX 36612809 36613192 -125986738 - L1PA13 LINE L1 -11 6152 5768 6928 245 37 39 chrX 36613192 36613923 -125986007 - L1ME2 LINE L1 -5447 768 37 1657 184 93 37 chrX 36614358 36614733 -125985197 - MSTD LTR MaLR 0 396 1 22 88 0 0 chrX 36615769 36615826 -125984104 + AT_rich Low_complexity Low_complexity 1 57 0 647 292 74 20 chrX 36615916 36616306 -125983624 - L1ME4a LINE L1 -175 5946 5536 17585 44 1 0 chrX 36617232 36620170 -125979760 + L1PA5 LINE L1 3210 6150 -4 956 261 109 40 chrX 36620170 36620499 -125979431 + MLT1H LTR MaLR 91 442 -107 21 36 0 0 chrX 36621674 36621702 -125978228 + AT_rich Low_complexity Low_complexity 1 28 0 450 113 56 0 chrX 36621761 36621832 -125978098 - Charlie3 DNA MER1_type -9 2701 2627 734 291 205 25 chrX 36621934 36622329 -125977601 + L2 LINE L2 2848 3313 0 297 109 0 0 chrX 36622348 36622394 -125977536 + (TG)n Simple_repeat Simple_repeat 1 46 0 1580 155 15 4 chrX 36622542 36622806 -125977124 - AluJo SINE Alu -3 309 43 320 332 38 38 chrX 36624216 36624398 -125975532 - MIR SINE MIR -50 212 33 818 220 28 0 chrX 36624408 36624590 -125975340 + MER5A DNA MER1_type 1 187 -2 216 214 0 0 chrX 36624761 36624803 -125975127 + A-rich Low_complexity Low_complexity 1 42 0 2353 224 35 26 chrX 36625429 36626151 -125973779 + L1M4 LINE L1 3881 4608 -1538 210 302 0 0 chrX 36626202 36626265 -125973665 + MIR SINE MIR 200 262 0 1486 275 80 43 chrX 36626573 36627838 -125972092 + L1ME LINE L1 51 1333 -4747 14790 161 85 7 chrX 36627847 36631993 -125967937 + L1PBa LINE L1 1 4470 -2392 348 24 0 0 chrX 36631999 36632040 -125967890 + (CA)n Simple_repeat Simple_repeat 2 42 0 2686 92 0 5 chrX 36632040 36632405 -125967525 + L1PB1 LINE L1 5788 6150 -1 280 254 0 0 chrX 36632485 36632552 -125967378 + L1ME LINE L1 1386 1452 -4809 230 261 58 35 chrX 36632581 36632807 -125967123 - L1M4 LINE L1 -820 5326 5096 765 181 112 32 chrX 36632977 36633165 -125966765 + L1MD2 LINE L1 6146 6348 -11 314 286 68 15 chrX 36633191 36633324 -125966606 + MARNA DNA Mariner 370 509 -77 414 257 125 13 chrX 36633422 36633574 -125966356 - MIR SINE MIR -39 223 55 960 201 211 27 chrX 36634058 36634545 -125965385 - Charlie2 DNA MER1_type -4 2858 2282 4797 89 9 12 chrX 36634551 36635216 -125964714 - L1PA10 LINE L1 -116 6052 5390 1311 243 51 9 chrX 36635216 36635644 -125964286 - Charlie2 DNA MER1_type -564 2298 1853 698 233 54 66 chrX 36635632 36635890 -125964040 - Charlie2 DNA MER1_type -2452 330 76 * 723 290 0 11 chrX 36636008 36636191 -125963739 + MIR SINE MIR 41 221 -41 5034 206 31 11 chrX 36636701 36637713 -125962217 - MER45B DNA AcHobo -8 1032 1 503 285 29 0 chrX 36637989 36638126 -125961804 + LTR16A LTR ERVL 96 236 -214 470 146 19 39 chrX 36638159 36638262 -125961668 - MER53 DNA DNA -88 101 1 380 276 16 0 chrX 36638262 36638373 -125961557 + LTR16A LTR ERVL 242 354 -96 239 221 12 0 chrX 36638651 36638737 -125961193 + (TA)n Simple_repeat Simple_repeat 2 88 0 621 323 26 18 chrX 36638937 36639166 -125960764 + MIR SINE MIR 2 232 -30 28 29 0 0 chrX 36639166 36639201 -125960729 + AT_rich Low_complexity Low_complexity 1 35 0 209 293 4 21 chrX 36640061 36640141 -125959789 - MER5A DNA MER1_type -98 91 2 183 80 0 0 chrX 36640463 36640488 -125959442 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 235 357 0 0 chrX 36640490 36640546 -125959384 - L2 LINE L2 -12 3260 3205 528 287 89 25 chrX 36641149 36641351 -125958579 - MIR SINE MIR 0 262 48 395 270 66 66 chrX 36642410 36642547 -125957383 + L2 LINE L2 3136 3272 0 1402 298 95 4 chrX 36642774 36643248 -125956682 + MER69 DNA AcHobo 2 518 -708 * 1431 206 64 0 chrX 36643243 36643587 -125956343 + MER69 DNA AcHobo 2161 2526 0 2700 39 0 0 chrX 36643903 36644213 -125955717 - AluY SINE Alu -1 310 1 1478 272 79 10 chrX 36644652 36645133 -125954797 + LTR33 LTR ERVL 1 514 -7 411 254 65 53 chrX 36646028 36646197 -125953733 + HAL1 LINE L1 1014 1184 -1323 5927 175 26 2 chrX 36646256 36648292 -125951638 - L1PA16 LINE L1 -9 6157 4074 279 0 0 0 chrX 36648333 36648364 -125951566 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 43179 47 6 6 chrX 36648367 36654524 -125945406 - L1PA3 LINE L1 -3 6152 1 2958 218 51 19 chrX 36654521 36655272 -125944658 - L1PA16 LINE L1 -2058 4088 3314 * 243 358 24 41 chrX 36655653 36655776 -125944154 - L2 LINE L2 0 3272 3152 375 105 0 0 chrX 36656137 36656194 -125943736 + (TC)n Simple_repeat Simple_repeat 2 58 0 261 0 0 0 chrX 36656194 36656223 -125943707 + (CA)n Simple_repeat Simple_repeat 1 29 0 2053 215 40 7 chrX 36657548 36658143 -125941787 - L1MD2 LINE L1 -1 6358 5695 4760 209 114 30 chrX 36658153 36659466 -125940464 - L1MDa LINE L1 -4666 1874 117 2461 89 0 3 chrX 36659466 36659780 -125940150 - AluSq SINE Alu 0 313 1 4760 209 114 30 chrX 36659780 36659888 -125940042 - L1MDa LINE L1 -6423 117 19 192 77 0 0 chrX 36660568 36660594 -125939336 + (A)n Simple_repeat Simple_repeat 1 26 0 659 243 45 28 chrX 36660696 36660873 -125939057 - MER5A DNA MER1_type -1 188 9 264 111 0 0 chrX 36662717 36662762 -125937168 + (GA)n Simple_repeat Simple_repeat 1 45 0 2011 235 122 7 chrX 36663202 36663790 -125936140 + L1ME3 LINE L1 5507 6162 0 182 37 37 0 chrX 36664048 36664075 -125935855 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chrX 36664124 36664159 -125935771 + AT_rich Low_complexity Low_complexity 1 35 0 281 302 19 38 chrX 36665255 36665361 -125934569 - L2 LINE L2 -914 2400 2297 5168 215 54 27 chrX 36665404 36666663 -125933267 + L1M4 LINE L1 1 1293 -5249 306 258 0 0 chrX 36666765 36666831 -125933099 - MLT1-int LTR MaLR -635 736 671 * 7368 228 30 9 chrX 36666806 36668828 -125931102 + L1M4 LINE L1 2713 4776 -1868 2472 70 3 0 chrX 36869203 36869503 -125730427 + AluSp SINE Alu 1 301 -12 315 299 47 47 chrX 36869837 36870051 -125729879 - L2 LINE L2 -1 3312 3099 384 331 174 32 chrX 36870108 36870516 -125729414 - L2 LINE L2 -342 2972 2507 416 312 29 6 chrX 36870532 36870702 -125729228 - L2 LINE L2 -944 2370 2197 258 224 35 0 chrX 36870824 36870882 -125729048 + MIR SINE MIR 82 141 -121 1675 224 86 24 chrX 36870902 36871310 -125728620 - LTR33 LTR ERVL 0 521 77 3217 140 88 2 chrX 36871310 36871824 -125728106 + LTR64 LTR ERVK 1 558 0 1675 224 86 24 chrX 36871824 36871906 -125728024 - LTR33 LTR ERVL -444 77 1 257 320 13 0 chrX 36871912 36871987 -125727943 + MIR SINE MIR 177 252 -10 216 0 0 0 chrX 36872028 36872052 -125727878 + (TA)n Simple_repeat Simple_repeat 2 25 0 1019 315 26 22 chrX 36872074 36872528 -125727402 - L1ME LINE L1 -338 5783 5328 8019 27 2 0 chrX 36872671 36873653 -125726277 + L1PA4 LINE L1 5188 6171 0 2313 110 0 0 chrX 36873786 36874086 -125725844 - AluSx SINE Alu -12 300 1 330 306 90 90 chrX 36874091 36874558 -125725372 - L1ME LINE L1 -1120 5026 4560 363 283 35 112 chrX 36874612 36874898 -125725032 - HAL1b LINE L1 -985 363 100 1446 216 101 78 chrX 36875186 36875561 -125724369 + L1MC4a LINE L1 5518 5914 -1894 2372 81 3 0 chrX 36875561 36875857 -125724073 + AluSp SINE Alu 1 297 -16 1446 216 101 78 chrX 36875857 36876073 -125723857 + L1MC4a LINE L1 5914 6123 -1685 2288 255 72 43 chrX 36876573 36877033 -125722897 + L1MC4 LINE L1 6971 7416 -626 2481 71 3 0 chrX 36877033 36877330 -125722600 + AluSp SINE Alu 1 298 -15 2288 255 72 43 chrX 36877330 36877684 -125722246 + L1MC4 LINE L1 7416 7758 -284 1305 393 3 13 chrX 36877684 36877984 -125721946 - AluSx SINE Alu -15 297 1 2288 255 72 43 chrX 36877984 36878084 -125721846 + L1MC4 LINE L1 7758 7854 -188 2239 118 0 3 chrX 36878084 36878389 -125721541 + AluSp SINE Alu 1 304 -9 2288 255 72 43 chrX 36878389 36878499 -125721431 + L1MC4 LINE L1 7854 8027 -15 270 307 35 9 chrX 36878529 36878643 -125721287 + HAL1 LINE L1 1557 1673 -834 248 350 86 0 chrX 36878885 36879002 -125720928 - LTR16A LTR ERVL -323 127 1 1019 193 78 46 chrX 36879007 36879225 -125720705 + MER45B DNA AcHobo 1 225 -815 750 177 0 31 chrX 36879251 36879381 -125720549 - FLAM_A SINE Alu -7 126 1 405 182 0 0 chrX 36879392 36879458 -125720472 + MER45B DNA AcHobo 975 1040 0 923 216 131 5 chrX 36879734 36879956 -125719974 + MLT1J LTR MaLR 1 250 -261 393 185 65 0 chrX 36880027 36880119 -125719811 + MLT1J LTR MaLR 414 511 0 1301 256 82 54 chrX 36881546 36882049 -125717881 + LTR33 LTR ERVL 2 518 -3 2312 79 0 30 chrX 36882159 36882464 -125717466 + AluSx SINE Alu 1 296 -16 881 194 59 11 chrX 36883140 36883326 -125716604 + Charlie4 DNA MER1_type 1 195 -1766 * 2149 105 0 41 chrX 36883324 36883539 -125716391 + MER84 LTR ERVI 206 405 -102 2148 124 0 0 chrX 36883539 36883838 -125716092 + AluSx SINE Alu 5 303 -9 2149 105 0 41 chrX 36883838 36883937 -125715993 + MER84 LTR ERVI 405 507 0 16972 87 24 8 chrX 36883937 36886180 -125713750 + MER84-int LTR ERV1 1 2280 -2674 10562 106 26 8 chrX 36886176 36887654 -125712276 + MER84-int LTR ERV1 3451 4954 0 * 3859 107 4 4 chrX 36887654 36888161 -125711769 + MER84 LTR ERV1 1 507 0 2588 148 138 16 chrX 36888163 36888663 -125711267 - LTR48 LTR ERV1 -226 561 1 982 221 147 81 chrX 36888680 36889210 -125710720 + MER34B LTR ERV1 1 565 0 385 156 0 0 chrX 36889426 36889490 -125710440 + L1MC4a LINE L1 7626 7689 -119 2320 100 3 0 chrX 36890542 36890842 -125709088 - AluSq SINE Alu -12 301 1 3848 122 61 42 chrX 36890916 36891557 -125708373 + MER39B LTR ERV1 1 653 0 2179 92 55 0 chrX 36891753 36892045 -125707885 - AluSg SINE Alu -2 308 1 2638 218 10 58 chrX 36892063 36892544 -125707386 - L1ME1 LINE L1 -5 6161 5722 2267 107 3 0 chrX 36892544 36892843 -125707087 + AluSx SINE Alu 1 300 -12 2638 218 10 58 chrX 36892843 36893057 -125706873 - L1ME1 LINE L1 -444 5722 5499 549 297 97 35 chrX 36894313 36894777 -125705153 - L1ME4a LINE L1 -236 5885 5393 718 284 70 87 chrX 36895206 36895651 -125704279 - LTR16A LTR ERVL -13 437 1 811 220 104 33 chrX 36896958 36897199 -125702731 - L1ME3A LINE L1 -2 6168 5911 480 285 106 0 chrX 36897317 36897440 -125702490 - L2 LINE L2 -1 3271 3136 614 141 0 10 chrX 36897453 36897552 -125702378 + MER4A LTR ERV1 1 98 -566 1352 102 194 98 chrX 36897552 36897867 -125702063 + MER4A LTR ERV1 261 605 -59 201 340 0 0 chrX 36898031 36898134 -125701796 + (CCCCAG)n Simple_repeat Simple_repeat 4 106 0 516 269 65 32 chrX 36899569 36899755 -125700175 - MIR SINE MIR -7 255 64 321 26 0 0 chrX 36900013 36900051 -125699879 + (TG)n Simple_repeat Simple_repeat 1 38 0 351 199 0 37 chrX 36900060 36900221 -125699709 + (TA)n Simple_repeat Simple_repeat 2 156 0 216 67 0 0 chrX 36900905 36900935 -125698995 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 592 198 8 24 chrX 36901343 36901469 -125698461 + MER69 DNA AcHobo 2400 2523 -3 1559 131 67 29 chrX 36902444 36902867 -125697063 + LTR48-int LTR ERV1 150 686 -5912 189 0 0 0 chrX 36902948 36902969 -125696961 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1474 226 39 7 chrX 36903017 36903322 -125696608 + LTR48-int LTR ERV1 1854 2168 -4163 6032 106 72 23 chrX 36903383 36903719 -125696211 + LTR48-int LTR ERV1 198 516 -6242 2506 63 7 0 chrX 36903719 36904020 -125695910 + AluY SINE Alu 1 303 -8 6032 106 72 23 chrX 36904020 36904128 -125695802 + LTR48-int LTR ERV1 516 617 -6141 2512 112 77 26 chrX 36904128 36904556 -125695374 - LTR7 LTR ERV1 0 450 1 6032 106 72 23 chrX 36904556 36905026 -125694904 + LTR48-int LTR ERV1 617 1158 -5600 4564 86 53 9 chrX 36905048 36905749 -125694181 + LTR48-int LTR ERV1 1764 2495 -4103 1420 146 75 0 chrX 36905749 36905988 -125693942 - LTR8 LTR ERV1 -434 257 1 3975 127 119 39 chrX 36905988 36906211 -125693719 + LTR48-int LTR ERV1 2737 2941 -3657 2462 39 0 0 chrX 36906211 36906554 -125693376 - AluY SINE Alu 0 343 1 3975 127 119 39 chrX 36906554 36907203 -125692727 + LTR48-int LTR ERV1 2941 3681 -2917 * 7164 94 43 32 chrX 36907202 36908330 -125691600 + LTR48-int LTR ERV1 3837 4977 -1621 1736 90 35 4 chrX 36908308 36908563 -125691367 + LTR48-int LTR ERV1 4502 4764 -251 * 718 155 11 33 chrX 36908573 36908754 -125691176 + GA-rich Low_complexity Low_complexity 3 179 0 3241 188 85 3 chrX 36908756 36909417 -125690513 + LTR48 LTR ERV1 62 776 -11 1013 128 0 6 chrX 36909528 36909684 -125690246 + MER41B LTR ERV1 481 635 0 2565 47 0 0 chrX 36909760 36910056 -125689874 - AluY SINE Alu -15 296 1 419 327 165 26 chrX 36910489 36911070 -125688860 + L2 LINE L2 1710 2371 -943 3114 137 74 2 chrX 36911070 36911583 -125688347 + MER34B LTR ERV1 16 565 0 502 264 7 14 chrX 36911799 36911947 -125687983 + L2 LINE L2 3167 3313 0 17470 158 26 22 chrX 36912330 36914525 -125685405 + L1MA2 LINE L1 25 2238 -5327 2438 85 0 0 chrX 36914525 36914830 -125685100 + AluSg SINE Alu 1 305 -5 17470 158 26 22 chrX 36914830 36915591 -125684339 + L1MA2 LINE L1 2238 2994 -4571 3058 154 15 4 chrX 36915719 36916253 -125683677 + L1MA2 LINE L1 5313 5852 -1713 * 7256 96 5 29 chrX 36916250 36916351 -125683579 + L1MA2 LINE L1 6650 6752 -971 2165 126 10 0 chrX 36916351 36916661 -125683269 + AluSq SINE Alu 1 313 0 7256 96 5 29 chrX 36916661 36917657 -125682273 + L1MA2 LINE L1 6752 7723 0 200 125 0 25 chrX 36917660 36917700 -125682230 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 40 59 0 0 chrX 36918171 36918239 -125681691 + AT_rich Low_complexity Low_complexity 1 68 0 1713 214 32 21 chrX 36918805 36919183 -125680747 - MLT1E LTR MaLR -2 591 210 561 225 10 50 chrX 36919223 36919423 -125680507 - HAL1 LINE L1 -1349 1158 967 423 38 0 0 chrX 36919474 36919527 -125680403 + (TG)n Simple_repeat Simple_repeat 2 54 0 1026 233 127 1 chrX 36919528 36919964 -125679966 - MLT2F LTR ERVL -126 537 1 2278 91 0 10 chrX 36919977 36920275 -125679655 - AluY SINE Alu -15 296 2 4819 174 46 15 chrX 36920372 36920726 -125679204 + MER49 LTR ERV1 5 346 -577 2182 124 0 3 chrX 36920726 36921024 -125678906 - AluSx SINE Alu -15 297 1 4819 174 46 15 chrX 36921024 36921560 -125678370 + MER49 LTR ERV1 346 923 0 261 237 55 190 chrX 36921690 36921814 -125678116 + L2 LINE L2 7 76 -3238 4241 93 22 0 chrX 36921814 36922408 -125677522 + L1PA14 LINE L1 5542 6148 -13 261 237 55 190 chrX 36922408 36922557 -125677373 + L2 LINE L2 76 243 -3071 * 681 287 35 13 chrX 36922526 36922756 -125677174 + L2 LINE L2 3074 3308 -5 2203 117 0 0 chrX 36922977 36923275 -125676655 - AluSp SINE Alu -15 298 1 325 298 0 53 chrX 36923696 36923847 -125676083 + MLT1J2 LTR MaLR 1 143 -307 261 202 60 83 chrX 36923875 36924017 -125675913 + MLT1J2 LTR MaLR 225 422 -28 955 319 98 0 chrX 36924769 36925177 -125674753 + LTR16A LTR ERVL 1 448 -2 195 42 0 0 chrX 36926149 36926173 -125673757 + (GA)n Simple_repeat Simple_repeat 1 24 0 2016 219 118 10 chrX 36926569 36927077 -125672853 + MLT1F1 LTR MaLR 5 567 0 2421 85 0 0 chrX 36927286 36927593 -125672337 - AluSx SINE Alu -5 307 1 313 362 31 52 chrX 36928162 36928297 -125671633 + MIR SINE MIR 18 148 -64 2441 101 0 0 chrX 36928858 36929164 -125670766 - AluSx SINE Alu -6 306 1 373 236 102 47 chrX 36929217 36929344 -125670586 - MER5A DNA MER1_type 0 189 56 296 343 34 63 chrX 36929219 36929394 -125670536 + MER5A DNA MER1_type 17 186 -3 * 1058 310 109 25 chrX 36929497 36930258 -125669672 + L2 LINE L2 2429 3255 -58 966 176 10 5 chrX 36931324 36931528 -125668402 - L1MD3 LINE L1 -6 7989 7785 2259 100 3 0 chrX 36931592 36931881 -125668049 + AluSq SINE Alu 1 290 -23 363 23 0 0 chrX 36931911 36931955 -125667975 + (CA)n Simple_repeat Simple_repeat 1 44 0 2704 26 0 3 chrX 36932404 36932715 -125667215 - AluY SINE Alu -1 310 1 2223 91 0 0 chrX 36932797 36933105 -125666825 + AluSx SINE Alu 1 308 0 191 286 79 0 chrX 36933653 36933716 -125666214 - MIR SINE MIR -137 125 58 898 165 81 17 chrX 36934394 36934630 -125665300 + LTR65 LTR ERV1 3 253 -416 22 0 0 0 chrX 36934749 36934771 -125665159 + AT_rich Low_complexity Low_complexity 1 22 0 2138 8 0 0 chrX 36934772 36935024 -125664906 - L1HS LINE L1 0 6155 5904 * 5305 17 0 0 chrX 36935010 36935654 -125664276 + L1HS LINE L1 5263 5906 -249 1383 207 118 11 chrX 36935654 36936036 -125663894 + LTR65 LTR ERV1 245 667 -2 2343 94 0 3 chrX 36936225 36936523 -125663407 + AluSx SINE Alu 1 297 -15 3222 161 54 5 chrX 36938105 36938681 -125661249 + MER6A DNA MER2_type 1 604 -1 2399 165 115 6 chrX 36939144 36939683 -125660247 + L1MB7 LINE L1 5566 6163 -21 411 229 41 24 chrX 36939693 36939863 -125660067 - Charlie4 DNA MER1_type -528 1433 1261 2424 84 0 0 chrX 36940393 36940690 -125659240 + AluSx SINE Alu 1 297 -15 856 208 67 28 chrX 36940838 36941122 -125658808 - Charlie4 DNA MER1_type -1665 296 2 562 200 37 0 chrX 36941303 36941438 -125658492 - L1MD2 LINE L1 -22 6337 6198 441 225 0 0 chrX 36943204 36943284 -125656646 + FRAM/FAM SINE Alu 1 79 -97 2323 103 0 3 chrX 36943452 36943753 -125656177 + AluSx SINE Alu 2 301 -11 754 287 147 14 chrX 36944358 36944800 -125655130 + LTR33A LTR ERVL 23 523 0 1636 210 63 18 chrX 36945222 36945665 -125654265 + MLT1C LTR MaLR 1 463 -4 3024 230 100 15 chrX 36945710 36946891 -125653039 - L1M4 LINE L1 -2466 3680 2400 10263 25 0 2 chrX 36947458 36949439 -125650491 + L1PA4 LINE L1 4177 6155 0 2497 93 0 0 chrX 36950713 36951025 -125648905 + AluSx SINE Alu 1 312 0 1228 124 0 0 chrX 36951247 36951416 -125648514 - AluSg/x SINE Alu -10 302 134 2281 91 0 10 chrX 36951416 36951724 -125648206 - AluY SINE Alu -6 305 1 443 371 75 47 chrX 36952917 36953424 -125646506 + HAL1 LINE L1 108 628 -1879 457 130 98 0 chrX 36953652 36953744 -125646186 - L1MA7 LINE L1 0 6291 6191 250 282 64 39 chrX 36954088 36954166 -125645764 + L2 LINE L2 3170 3249 -23 3106 135 54 3 chrX 36954300 36954877 -125645053 - L1MA4 LINE L1 -28 6272 5667 253 152 106 0 chrX 36954854 36954920 -125645010 - L1MA7 LINE L1 -62 6229 6157 * 4183 145 27 24 chrX 36954924 36955911 -125644019 - L1MA7 LINE L1 -221 6070 5086 23 0 0 0 chrX 36955911 36955934 -125643996 + AT_rich Low_complexity Low_complexity 1 23 0 232 253 92 0 chrX 36957642 36957729 -125642201 + HAL1 LINE L1 2078 2172 -335 2371 92 0 0 chrX 36959461 36959764 -125640166 + AluSg SINE Alu 1 303 -7 473 302 154 0 chrX 36960045 36960194 -125639736 + MER5A DNA MER1_type 12 183 -6 1881 196 42 27 chrX 36960694 36961102 -125638828 - MLT2D LTR ERVL 0 414 1 1506 161 71 107 chrX 36961846 36962160 -125637770 - MSTD LTR MaLR 0 396 99 2227 106 0 3 chrX 36962160 36962452 -125637478 - AluSp SINE Alu -22 291 1 1506 161 71 107 chrX 36962452 36962548 -125637382 - MSTD LTR MaLR -297 99 1 1592 60 18 9 chrX 36962686 36962904 -125637026 + L1PA12 LINE L1 5949 6168 0 504 264 163 50 chrX 36963314 36963779 -125636151 - LTR33 LTR ERVL 0 521 4 204 40 0 0 chrX 36964448 36964473 -125635457 + (A)n Simple_repeat Simple_repeat 1 25 0 2383 123 15 15 chrX 36964608 36965008 -125634922 - L1MB4 LINE L1 0 6180 5781 22 0 0 0 chrX 36965201 36965223 -125634707 + AT_rich Low_complexity Low_complexity 1 22 0 586 290 56 72 chrX 36965251 36965842 -125634088 - L1ME3 LINE L1 -296 5866 5354 646 320 44 24 chrX 36966304 36966554 -125633376 - MIR SINE MIR -6 256 2 2010 157 0 25 chrX 36968131 36968450 -125631480 - AluJb SINE Alu -1 311 1 2678 164 70 19 chrX 36968658 36969184 -125630746 - LTR49 LTR ERV1 -42 553 1 822 301 154 3 chrX 36970027 36970326 -125629604 + MLT1I LTR MaLR 1 344 -65 463 323 47 43 chrX 36970421 36970700 -125629230 + LTR16B LTR ERVL 40 319 -145 435 275 7 40 chrX 36970742 36970891 -125629039 + LTR16B LTR ERVL 320 463 -1 845 321 56 14 chrX 36971977 36972332 -125627598 - LTR16B LTR ERVL 0 464 95 298 282 137 43 chrX 36972627 36972744 -125627186 + MIR SINE MIR 64 191 -71 304 205 102 84 chrX 36972973 36973139 -125626791 - MLT1K LTR MaLR -57 531 363 1982 117 59 0 chrX 36973513 36973786 -125626144 - AluSx SINE Alu -23 289 1 817 316 122 11 chrX 36973895 36974272 -125625658 - LTR16C LTR ERVL 0 491 73 2682 199 52 15 chrX 36974303 36974845 -125625085 - MLT1F1 LTR MaLR -5 562 1 351 0 0 0 chrX 36974980 36975019 -125624911 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 1332 6 0 33 chrX 36975020 36975203 -125624727 + (TTC)n Simple_repeat Simple_repeat 1 177 0 252 86 0 0 chrX 36975204 36975239 -125624691 + (TTCTCC)n Simple_repeat Simple_repeat 4 38 0 1809 151 26 35 chrX 36975239 36975550 -125624380 - AluSq SINE Alu -1 312 5 447 305 45 11 chrX 36976103 36976280 -125623650 - LTR16C LTR ERVL -32 459 277 8852 112 5 29 chrX 36976422 36977523 -125622407 + HSMAR2 DNA Mariner 9 1073 -229 1888 142 33 0 chrX 36977523 36977798 -125622132 + AluJb SINE Alu 7 290 -22 8852 112 5 29 chrX 36977798 36978023 -125621907 + HSMAR2 DNA Mariner 1073 1302 0 3829 110 54 17 chrX 36978683 36979257 -125620673 + LTR49 LTR ERV1 1 595 0 4097 146 27 17 chrX 36979485 36980189 -125619741 + MER50 LTR ERV1 1 711 -23 2155 144 101 93 chrX 36980363 36980919 -125619011 - LTR49 LTR ERV1 -33 562 3 2241 81 7 7 chrX 36981400 36981695 -125618235 - AluSq SINE Alu -18 295 1 1007 181 62 6 chrX 36981919 36982096 -125617834 + MER5A DNA MER1_type 3 189 0 369 203 13 0 chrX 36982419 36982498 -125617432 - MER5A DNA MER1_type -83 106 27 2992 116 51 28 chrX 36982519 36983178 -125616752 + LTR8A LTR ERV1 1 727 0 403 326 11 17 chrX 36983887 36984065 -125615865 + CT-rich Low_complexity Low_complexity 4 180 0 295 268 150 39 chrX 36985964 36986091 -125613839 + MIR SINE MIR 5 145 -117 326 118 132 29 chrX 36986098 36986166 -125613764 - MER34 LTR ERV1 0 542 468 845 173 70 193 chrX 36986220 36986553 -125613377 - MER34B LTR ERV1 -161 404 140 2357 39 0 21 chrX 36986553 36986835 -125613095 + AluY SINE Alu 2 277 -34 845 173 70 193 chrX 36986835 36986957 -125612973 - MER34B LTR ERV1 -425 140 5 2412 87 0 0 chrX 36987484 36987783 -125612147 + AluSg SINE Alu 1 299 -11 3126 168 22 13 chrX 36988764 36989318 -125610612 - MER89 LTR ERV1 0 559 1 1464 248 58 22 chrX 36989451 36989866 -125610064 + LTR16A LTR ERVL 21 450 0 344 146 0 18 chrX 36989877 36989932 -125609998 + LTR33 LTR ERVL 468 521 0 285 75 0 0 chrX 36990125 36990165 -125609765 + (CA)n Simple_repeat Simple_repeat 2 41 0 1100 231 4 21 chrX 36990609 36990847 -125609083 + MIR SINE MIR 5 238 -24 2297 120 3 0 chrX 36991104 36991412 -125608518 + AluSx SINE Alu 1 309 -3 490 257 60 9 chrX 36991447 36991678 -125608252 + L1ME LINE L1 5241 5482 -682 338 211 26 13 chrX 36992149 36992225 -125607705 + MLT1K LTR MaLR 512 588 0 385 334 77 67 chrX 36992348 36992737 -125607193 - L2 LINE L2 -339 2975 2583 706 274 5 39 chrX 36993489 36993693 -125606237 + LTR16A LTR ERVL 97 293 -157 2595 168 20 58 chrX 36993693 36994234 -125605696 - MLT1D LTR MaLR 0 505 3 784 211 19 6 chrX 36994235 36994396 -125605534 + LTR16A LTR ERVL 288 450 0 1406 226 7 10 chrX 36994690 36994986 -125604944 - LTR16A LTR ERVL 0 450 156 1436 204 35 45 chrX 36994987 36995385 -125604545 - L1ME LINE L1 -578 5588 5195 409 271 7 21 chrX 36996023 36996167 -125603763 - LTR16A1 LTR ERVL -4 453 312 944 259 47 22 chrX 36996365 36996634 -125603296 + LTR16A1 LTR ERVL 168 488 -3 780 180 0 0 chrX 36997263 36997391 -125602539 - MLT1B LTR MaLR 0 390 263 1766 207 67 64 chrX 36997393 36998094 -125601836 + MER49 LTR ERV1 1 901 -22 2300 96 3 3 chrX 36998094 36998397 -125601533 - AluSq SINE Alu -10 303 1 1766 207 67 64 chrX 36998397 36998421 -125601509 + MER49 LTR ERV1 901 923 0 1237 171 38 49 chrX 36998425 36998688 -125601242 - MLT1B LTR MaLR -130 260 1 2001 260 74 42 chrX 36998689 36999436 -125600494 + Charlie2b DNA MER1_type 60 830 -1952 1182 199 117 35 chrX 36999436 36999777 -125600153 + Charlie2a DNA MER1_type 1625 1993 -869 843 215 0 13 chrX 36999778 36999936 -125599994 + FRAM SINE Alu 1 155 -21 443 221 118 15 chrX 36999941 37000077 -125599853 + Charlie2a DNA MER1_type 1988 2137 -725 428 348 27 27 chrX 37002238 37002494 -125597436 + ERVL LTR ERVL 798 1053 -4711 377 194 75 32 chrX 37002666 37002745 -125597185 + Tigger5 DNA MER2_type 1 83 -2240 458 179 13 0 chrX 37002745 37002823 -125597107 - Tigger5 DNA MER2_type -3 2320 2242 340 115 0 19 chrX 37002813 37002865 -125597065 + Tigger5 DNA MER2_type 2242 2292 -31 * 1443 193 107 45 chrX 37002972 37003560 -125596370 - LTR48B LTR ERV1 -3 641 1 508 353 30 30 chrX 37003692 37003844 -125596086 + ERVL LTR ERVL 1302 1456 -3540 2506 103 132 8 chrX 37003844 37004224 -125595706 + MSTA LTR MaLR 1 427 -1 508 353 30 30 chrX 37004224 37004340 -125595590 + ERVL LTR ERVL 1455 1570 -3426 678 283 38 25 chrX 37004357 37004731 -125595199 - LTR16A LTR ERVL -14 436 5 1277 300 32 26 chrX 37004734 37005598 -125594332 + ERVL LTR ERVL 1680 2591 -3173 434 204 239 0 chrX 37005674 37005787 -125594143 - LTR16A LTR ERVL 0 450 311 456 35 0 0 chrX 37006262 37006320 -125593610 + (GA)n Simple_repeat Simple_repeat 1 58 0 350 234 64 11 chrX 37007527 37007621 -125592309 - L1ME LINE L1 -482 5639 5541 1372 243 106 58 chrX 37007809 37008286 -125591644 - L1MC4 LINE L1 -20 8022 7509 1068 193 18 55 chrX 37008286 37008504 -125591426 + MER63A DNA MER1_type 1 210 0 1372 243 106 58 chrX 37008504 37008628 -125591302 - L1MC4 LINE L1 -533 7509 7392 402 21 0 0 chrX 37008660 37008707 -125591223 + (TG)n Simple_repeat Simple_repeat 2 48 0 1085 289 69 6 chrX 37009130 37009490 -125590440 - LTR16C LTR ERVL 0 491 109 332 285 146 7 chrX 37010383 37010534 -125589396 - LTR16C LTR ERVL -26 465 294 2365 87 7 0 chrX 37011476 37011775 -125588155 - AluSg SINE Alu -9 301 1 186 318 32 0 chrX 37011791 37011854 -125588076 - L2 LINE L2 -2848 466 402 21 0 0 0 chrX 37012326 37012347 -125587583 + AT_rich Low_complexity Low_complexity 1 21 0 26 23 0 23 chrX 37012890 37012915 -125587015 + AT_rich Low_complexity Low_complexity 1 26 -17 1998 128 0 10 chrX 37012915 37013204 -125586726 + AluSc SINE Alu 1 286 -23 26 23 0 23 chrX 37013204 37013222 -125586708 + AT_rich Low_complexity Low_complexity 26 43 0 1020 156 0 17 chrX 37013753 37013926 -125586004 - FRAM SINE Alu -14 162 1 1104 312 86 30 chrX 37015073 37015564 -125584366 - LTR33 LTR ERVL 0 521 4 216 133 22 22 chrX 37015897 37015942 -125583988 + CT-rich Low_complexity Low_complexity 1 45 0 225 0 0 0 chrX 37016879 37016904 -125583026 + (TG)n Simple_repeat Simple_repeat 2 26 0 201 337 21 32 chrX 37017239 37017334 -125582596 - MER5A DNA MER1_type -6 183 90 1863 177 98 36 chrX 37017339 37017779 -125582151 - MLT1C LTR MaLR 0 467 1 375 338 75 39 chrX 37018137 37018445 -125581485 + LTR16C LTR ERVL 167 485 -6 235 234 0 0 chrX 37018445 37018492 -125581438 - MER5A DNA MER1_type -136 53 7 2040 151 0 16 chrX 37018659 37018976 -125580954 + AluJo SINE Alu 1 312 0 315 0 0 0 chrX 37019646 37019681 -125580249 + (TG)n Simple_repeat Simple_repeat 2 36 0 440 266 272 0 chrX 37019895 37020079 -125579851 + MIR SINE MIR 28 261 -1 319 208 132 9 chrX 37020298 37020404 -125579526 - HAL1 LINE L1 -1411 1096 978 1240 279 139 37 chrX 37020468 37021178 -125578752 - HAL1 LINE L1 -1639 868 86 387 0 0 0 chrX 37021664 37021707 -125578223 + (TG)n Simple_repeat Simple_repeat 2 44 0 207 191 0 0 chrX 37021993 37022040 -125577890 + A-rich Low_complexity Low_complexity 1 47 0 260 281 110 12 chrX 37022251 37022333 -125577597 + MIR3 SINE MIR 100 189 -19 495 295 126 6 chrX 37022900 37023083 -125576847 + MIR3 SINE MIR 1 205 -3 25 0 0 0 chrX 37023124 37023149 -125576781 + AT_rich Low_complexity Low_complexity 1 25 0 205 284 90 0 chrX 37023248 37023315 -125576615 - MIR SINE MIR -142 120 48 282 262 136 10 chrX 37023396 37023499 -125576431 + MIR SINE MIR 24 139 -69 2212 121 3 7 chrX 37024412 37024717 -125575213 + AluSx SINE Alu 1 304 -8 1235 196 100 102 chrX 37024809 37025279 -125574651 + MLT2B1 LTR ERVL 1 471 -49 631 0 25 0 chrX 37025279 37025358 -125574572 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 1235 196 100 102 chrX 37025358 37025408 -125574522 + MLT2B1 LTR ERVL 471 520 0 2619 158 9 2 chrX 37025471 37025915 -125574015 + MLT1C LTR MaLR 21 467 0 535 267 49 78 chrX 37026079 37026366 -125573564 + L1ME4a LINE L1 5687 5963 -158 2414 108 25 14 chrX 37026366 37026726 -125573204 - THE1B LTR MaLR 0 364 1 535 267 49 78 chrX 37026726 37026877 -125573053 + L1ME4a LINE L1 5963 6117 -4 2976 203 66 37 chrX 37027362 37027612 -125572318 - L1ME1 LINE L1 -5 6230 5989 363 126 0 158 chrX 37027612 37027707 -125572223 + MADE1 DNA Mariner 1 80 0 2976 203 66 37 chrX 37027707 37028565 -125571365 - L1ME1 LINE L1 -246 5989 5086 2182 242 75 35 chrX 37028562 37029268 -125570662 - L1ME1 LINE L1 -1828 4387 3632 * 1945 166 0 3 chrX 37029268 37029564 -125570366 + AluJo SINE Alu 1 295 -17 2182 242 75 35 chrX 37029564 37029800 -125570130 - L1ME1 LINE L1 -2583 3632 3407 2050 255 16 18 chrX 37029802 37030370 -125569560 + MLT1F1 LTR MaLR 1 567 0 271 277 29 15 chrX 37030371 37030508 -125569422 + MLT1F1-int LTR MaLR 2 140 -1231 523 160 11 0 chrX 37030509 37030603 -125569327 + MLT1F1 LTR MaLR 469 563 -4 21 0 0 0 chrX 37030606 37030627 -125569303 + AT_rich Low_complexity Low_complexity 1 21 0 17396 190 32 15 chrX 37030631 37032123 -125567807 - L1PA15 LINE L1 -9 6807 5341 2492 84 0 0 chrX 37032123 37032431 -125567499 + AluY SINE Alu 1 308 -3 17396 190 32 15 chrX 37032431 37033079 -125566851 - L1PA15 LINE L1 -1475 5341 4705 2383 97 7 3 chrX 37033079 37033389 -125566541 - AluSq SINE Alu 0 313 3 17396 190 32 15 chrX 37033389 37037865 -125562065 - L1PA15 LINE L1 -2111 4705 1 5109 223 102 71 chrX 37037889 37040088 -125559842 - L1ME1 LINE L1 -2804 3411 959 685 200 0 8 chrX 37040088 37040213 -125559717 - FLAM_C SINE Alu -19 124 1 5109 223 102 71 chrX 37040213 37041167 -125558763 - L1ME1 LINE L1 -5256 959 35 917 234 24 0 chrX 37042796 37043001 -125556929 + MIR SINE MIR 4 213 -49 379 347 40 0 chrX 37043452 37043625 -125556305 - MIR SINE MIR 0 262 83 445 236 9 45 chrX 37044174 37044284 -125555646 + MIR SINE MIR 2 107 -155 * 718 150 0 0 chrX 37044280 37044393 -125555537 - MIR SINE MIR -66 196 84 407 277 40 89 chrX 37044454 37044678 -125555252 - L1MC4 LINE L1 -1 8041 7829 719 202 62 70 chrX 37044721 37044993 -125554937 - L1ME2 LINE L1 -20 6144 5875 2328 81 37 0 chrX 37045124 37045242 -125554688 + AluSc SINE Alu 1 113 -196 207 0 0 0 chrX 37045242 37045265 -125554665 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2328 81 37 0 chrX 37045265 37045444 -125554486 + AluSc SINE Alu 113 309 0 337 158 24 0 chrX 37045532 37045614 -125554316 + (TA)n Simple_repeat Simple_repeat 2 85 0 261 224 151 83 chrX 37046820 37046924 -125553006 - MER5A DNA MER1_type -4 185 62 956 120 6 12 chrX 37046924 37047091 -125552839 - L1MA4A LINE L1 -2 6301 6136 261 224 151 83 chrX 37047091 37047155 -125552775 - MER5A DNA MER1_type -127 62 4 226 168 126 59 chrX 37047664 37047783 -125552147 - L1MC4 LINE L1 -821 7221 7095 2520 66 3 0 chrX 37047897 37048199 -125551731 - AluSp SINE Alu -10 303 1 1008 271 94 36 chrX 37048214 37049144 -125550786 - L1MC4 LINE L1 -891 7002 5916 456 295 8 8 chrX 37049286 37049415 -125550515 + L2 LINE L2 3184 3312 -1 422 276 17 77 chrX 37049607 37049788 -125550142 + MER5A DNA MER1_type 2 171 -18 227 306 14 14 chrX 37049795 37049867 -125550063 + L3 LINE CR1 1399 1470 -107 206 200 55 18 chrX 37049936 37049991 -125549939 + L2 LINE L2 3216 3272 0 2520 76 10 90 chrX 37051022 37051432 -125548498 + MER51B LTR ERV1 1 377 0 1066 238 77 24 chrX 37051432 37051768 -125548162 + MLT1C LTR MaLR 66 419 -48 501 305 138 19 chrX 37051821 37051963 -125547967 - L1M4 LINE L1 -1569 4577 4453 1609 173 0 76 chrX 37051963 37052293 -125547637 - AluJo SINE Alu -7 305 1 501 305 138 19 chrX 37052293 37053111 -125546819 - L1M4 LINE L1 -1693 4453 3502 2540 138 50 5 chrX 37053287 37053728 -125546202 - MER65C LTR ERV1 0 461 1 248 283 85 28 chrX 37054133 37054239 -125545691 + MLT1I LTR MaLR 98 209 -200 1059 141 89 42 chrX 37054305 37054518 -125545412 - MER58A DNA MER1_type 0 224 2 198 373 75 22 chrX 37054642 37054776 -125545154 - MIR SINE MIR -102 160 20 199 265 44 73 chrX 37054815 37054883 -125545047 - MIR SINE MIR -76 132 67 234 273 80 0 chrX 37055228 37055316 -125544614 + MLT1C LTR MaLR 439 533 -22 4062 183 78 57 chrX 37055429 37056428 -125543502 + LTR28 LTR ERV1 1 1020 0 1758 190 23 0 chrX 37059153 37059458 -125540472 + AluJo SINE Alu 1 312 0 1973 133 39 0 chrX 37059498 37059777 -125540153 + AluSx SINE Alu 1 290 -22 232 194 14 56 chrX 37060691 37060763 -125539167 + L1ME4a LINE L1 5959 6027 -94 821 278 44 7 chrX 37060785 37061058 -125538872 + LTR16C LTR ERVL 1 283 -208 508 260 158 15 chrX 37061058 37061254 -125538676 - MER58A DNA MER1_type 0 224 1 * 584 282 47 33 chrX 37061254 37061465 -125538465 + LTR16C LTR ERVL 276 489 -2 2439 72 3 34 chrX 37062020 37062341 -125537589 - AluSp SINE Alu -2 311 1 501 228 25 56 chrX 37062400 37062597 -125537333 + L1ME3A LINE L1 5965 6155 -15 582 277 38 107 chrX 37062637 37063197 -125536733 - MER34 LTR ERV1 0 542 22 1396 73 5 55 chrX 37063768 37063916 -125536014 - L1MA2 LINE L1 -9 6295 6160 2073 107 45 3 chrX 37063916 37064206 -125535724 - AluSx SINE Alu -10 302 1 1396 73 5 55 chrX 37064206 37064277 -125535653 - L1MA2 LINE L1 -144 6160 6087 310 275 36 28 chrX 37064831 37065035 -125534895 - HERV3 LTR ERV1 -2935 5112 4451 1160 98 6 0 chrX 37067033 37067206 -125532724 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 2422 205 85 74 chrX 37068508 37069463 -125530467 - HERV3 LTR ERV1 -5185 1146 321 701 267 29 125 chrX 37069806 37070390 -125529540 - MER34 LTR ERV1 -1 541 14 276 376 16 11 chrX 37070612 37070801 -125529129 + LTR16B LTR ERVL 125 314 -150 277 172 0 0 chrX 37070827 37070885 -125529045 + LTR1B LTR ERV1 1 58 -768 324 216 12 81 chrX 37070891 37071057 -125528873 + LTR1B LTR ERV1 675 1020 0 1030 167 69 0 chrX 37071243 37071358 -125528572 + AluJo SINE Alu 1 133 -179 567 43 0 0 chrX 37071358 37071428 -125528502 + (CA)n Simple_repeat Simple_repeat 2 71 0 1030 167 69 0 chrX 37071428 37071486 -125528444 + AluJo SINE Alu 133 186 -126 2609 112 27 66 chrX 37071486 37072036 -125527894 - LTR10A LTR ERV1 -17 616 47 670 190 126 44 chrX 37072056 37072368 -125527562 + MER31B LTR ERV1 8 466 0 1767 120 7 11 chrX 37072640 37072915 -125527015 + LTR10A LTR ERV1 204 477 -132 21 0 0 0 chrX 37073080 37073101 -125526829 + AT_rich Low_complexity Low_complexity 1 21 0 637 284 52 52 chrX 37073828 37074156 -125525774 + Charlie2 DNA MER1_type 14 341 -2521 1993 193 42 14 chrX 37074157 37074747 -125525183 + Charlie2 DNA MER1_type 2221 2827 -35 237 239 15 0 chrX 37074748 37074815 -125525115 - L1MD3 LINE L1 -20 7975 7908 2348 173 32 19 chrX 37074858 37075332 -125524598 + MER89 LTR ERV1 71 550 -9 4145 214 54 32 chrX 37075342 37075683 -125524247 - L1MC3 LINE L1 -793 6992 6660 207 88 0 0 chrX 37075683 37075717 -125524213 + (CA)n Simple_repeat Simple_repeat 2 35 0 4145 214 54 32 chrX 37075717 37076651 -125523279 - L1MC3 LINE L1 -1125 6660 5689 297 0 0 0 chrX 37076658 37076691 -125523239 + (TCTA)n Simple_repeat Simple_repeat 3 35 0 307 254 87 48 chrX 37076695 37076821 -125523109 - MLT2C1 LTR ERVL -55 342 212 231 189 27 14 chrX 37076821 37076895 -125523035 + CT-rich Low_complexity Low_complexity 1 75 0 469 261 79 6 chrX 37076904 37077069 -125522861 - MLT2C1 LTR ERVL -203 194 18 1163 142 32 28 chrX 37077074 37077292 -125522638 - THE1C LTR MaLR -156 219 1 2068 262 22 18 chrX 37077295 37078028 -125521902 - L1M4 LINE L1 -1774 4372 3637 279 258 0 32 chrX 37078056 37078149 -125521781 + Charlie2 DNA MER1_type 2773 2862 0 489 352 12 47 chrX 37078383 37078704 -125521226 + LTR16A1 LTR ERVL 148 457 0 335 345 106 29 chrX 37078879 37079125 -125520805 + L2 LINE L2 3008 3272 0 3830 191 53 16 chrX 37079310 37080310 -125519620 + L1PA12 LINE L1 2 1317 -6264 2401 94 3 0 chrX 37080331 37080638 -125519292 - AluSp SINE Alu -5 308 1 849 226 35 9 chrX 37080653 37080883 -125519047 - L1MC4 LINE L1 -1040 7002 6767 1190 87 7 0 chrX 37080883 37081033 -125518897 - AluSp SINE Alu -162 151 1 2985 234 11 15 chrX 37081033 37081687 -125518243 + L1PA12 LINE L1 1035 1685 -5896 * 3534 171 9 6 chrX 37081684 37082397 -125517533 + L1PA12 LINE L1 2433 3151 -4433 5030 218 21 3 chrX 37082403 37083629 -125516301 + L1PA12 LINE L1 3452 4702 -2882 2326 29 0 11 chrX 37083629 37083907 -125516023 + L1PA3 LINE L1 5878 6155 0 598 231 24 0 chrX 37084270 37084439 -125515491 + L1PA12 LINE L1 4690 4862 -2722 403 91 45 0 chrX 37084442 37084508 -125515422 + MSTB LTR MaLR 358 426 0 306 277 11 36 chrX 37085356 37085492 -125514438 - MIR SINE MIR -59 203 73 261 0 0 0 chrX 37085719 37085748 -125514182 + (A)n Simple_repeat Simple_repeat 1 29 0 4099 61 0 32 chrX 37085981 37086370 -125513560 - L1PA7 LINE L1 0 6154 5787 2507 77 0 0 chrX 37086370 37086681 -125513249 - AluY SINE Alu 0 311 1 4099 61 0 32 chrX 37086681 37086852 -125513078 - L1PA7 LINE L1 -367 5787 5612 273 335 89 25 chrX 37086933 37087091 -125512839 + MER91A DNA MER1_type 4 171 -25 5484 151 10 19 chrX 37089614 37090626 -125509304 - L1MA10 LINE L1 0 6334 5332 1410 146 232 6 chrX 37090626 37090949 -125508981 + MSTD LTR MaLR 1 396 0 2654 188 4 2 chrX 37090951 37091498 -125508432 - L1MA10 LINE L1 -812 5334 4787 * 5133 179 36 33 chrX 37091495 37092663 -125507267 + L1MC3 LINE L1 6614 7784 -1 1574 211 22 14 chrX 37092681 37093036 -125506894 + L1MD2 LINE L1 26 383 -6157 1052 209 38 14 chrX 37093046 37093333 -125506597 + L1MD2 LINE L1 4156 4449 -2091 * 1080 219 184 16 chrX 37093318 37093692 -125506238 + L1MD2 LINE L1 5874 6310 -49 654 113 0 0 chrX 37093697 37093794 -125506136 + AluSg/x SINE Alu 211 307 -3 2281 232 17 69 chrX 37093850 37094748 -125505182 + L1MD2 LINE L1 4448 5298 -1242 332 100 0 0 chrX 37094749 37094799 -125505131 - L1P LINE L1 -1412 4734 4685 * 3332 167 24 6 chrX 37094797 37095457 -125504473 + L1P LINE L1 4710 5381 -765 2063 189 65 0 chrX 37095455 37095916 -125504014 + L1MD2 LINE L1 6037 6527 -226 * 393 282 80 11 chrX 37095932 37096120 -125503810 - MER69 DNA AcHobo -2086 440 240 281 292 52 10 chrX 37096333 37096429 -125503501 - MER5A DNA MER1_type 0 189 90 220 296 93 9 chrX 37097326 37097434 -125502496 - MIR SINE MIR 0 262 146 244 244 70 70 chrX 37097438 37097594 -125502336 - LTR16C LTR ERVL -10 481 326 468 288 42 24 chrX 37097974 37098186 -125501744 - LTR16B LTR ERVL -13 451 236 260 298 58 19 chrX 37098711 37098815 -125501115 + LTR67 LTR ERVL 408 515 -42 182 65 65 0 chrX 37098872 37098903 -125501027 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 365 186 0 14 chrX 37098914 37098984 -125500946 - AluY SINE Alu -108 193 125 256 271 0 0 chrX 37099249 37099319 -125500611 - MER63 DNA MER1_type 0 1061 992 1492 270 87 15 chrX 37099601 37100131 -125499799 - MLT1G LTR MaLR -12 578 11 2533 54 0 22 chrX 37100299 37100616 -125499314 - AluY SINE Alu -1 310 1 426 343 113 59 chrX 37100896 37102029 -125497901 - L2 LINE L2 -44 3228 2035 250 270 30 0 chrX 37102537 37102637 -125497293 - L1ME LINE L1 -299 5822 5720 982 220 15 104 chrX 37102840 37103121 -125496809 - Charlie7 DNA MER1_type -1952 660 424 282 116 0 0 chrX 37103121 37103164 -125496766 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 982 220 15 104 chrX 37103164 37103287 -125496643 - Charlie7 DNA MER1_type -2188 424 292 249 250 53 66 chrX 37103364 37103442 -125496488 - Charlie7 DNA MER1_type -2462 150 73 2555 113 14 3 chrX 37103442 37103813 -125496117 + THE1C LTR MaLR 1 375 0 249 250 53 66 chrX 37103813 37103886 -125496044 - Charlie7 DNA MER1_type -2539 73 1 386 220 40 40 chrX 37104335 37104435 -125495495 - MIR SINE MIR 0 262 163 561 317 0 15 chrX 37104446 37104645 -125495285 - HERVL LTR ERVL -2453 3201 3006 2399 192 33 48 chrX 37104903 37105533 -125494397 + L1MC4a LINE L1 7187 7807 -1 344 291 201 8 chrX 37105574 37105708 -125494222 + MIR3 SINE MIR 49 208 0 213 360 59 73 chrX 37105724 37106010 -125493920 - L2 LINE L2 0 3272 2991 2526 230 22 19 chrX 37106308 37106981 -125492949 - L1ME3A LINE L1 -8 6162 5488 8186 105 9 33 chrX 37107035 37107637 -125492293 + HSMAR2 DNA Mariner 6 621 -681 1469 167 48 87 chrX 37107637 37107948 -125491982 - AluJb SINE Alu -13 299 1 8186 105 9 33 chrX 37107948 37108674 -125491256 + HSMAR2 DNA Mariner 621 1302 0 266 185 19 25 chrX 37108678 37108771 -125491159 - L1ME3A LINE L1 -775 5393 5298 1568 204 49 33 chrX 37108801 37109169 -125490761 - MLT1A2 LTR MaLR 0 374 1 1815 153 24 10 chrX 37109298 37109593 -125490337 - AluJo SINE Alu -13 299 1 346 222 94 17 chrX 37109703 37109820 -125490110 - MIR SINE MIR -52 210 85 316 312 87 12 chrX 37110131 37110304 -125489626 + L1MC3 LINE L1 19 204 -6222 1387 184 37 105 chrX 37110316 37110717 -125489213 - MLT1A2 LTR MaLR 0 374 1 7635 228 39 77 chrX 37110717 37114268 -125485662 + L1MC3 LINE L1 2405 6090 -336 1615 193 20 10 chrX 37114268 37114564 -125485366 + AluJb SINE Alu 1 299 -13 7635 228 39 77 chrX 37114564 37114697 -125485233 + L1MC3 LINE L1 6090 5259 -1167 900 169 0 50 chrX 37114697 37114892 -125485038 + FRAM SINE Alu 1 40 0 7635 228 39 77 chrX 37114892 37115303 -125484627 + L1MC3 LINE L1 5258 5683 -743 6238 165 74 66 chrX 37117009 37117879 -125482051 + L1MC3 LINE L1 6483 7456 -609 252 256 12 23 chrX 37117879 37117965 -125481965 + MLT1F1 LTR MaLR 24 108 -459 6238 165 74 66 chrX 37117965 37118580 -125481350 + L1MC3 LINE L1 7456 8065 0 1667 251 124 26 chrX 37119044 37119097 -125480833 + L2 LINE L2 2257 2303 -1010 1059 286 102 15 chrX 37119097 37119576 -125480354 + LTR33 LTR ERVL 1 521 0 1667 251 124 26 chrX 37119576 37120479 -125479451 + L2 LINE L2 2303 3313 0 286 283 0 0 chrX 37121944 37122036 -125477894 + L1MC4 LINE L1 7934 8025 -17 3622 117 0 4 chrX 37122489 37123002 -125476928 - MER9 LTR ERVK 0 511 1 184 200 18 55 chrX 37123291 37123346 -125476584 - L2 LINE L2 -8 3305 3253 2873 203 24 38 chrX 37123391 37124322 -125475608 - L1M1 LINE L1 -6296 1269 12 809 193 72 5 chrX 37124328 37124535 -125475395 - L1M4 LINE L1 -1393 4753 4533 26 0 0 0 chrX 37124535 37124561 -125475369 + AT_rich Low_complexity Low_complexity 1 26 0 268 225 144 6 chrX 37124571 37124731 -125475199 + Charlie2 DNA MER1_type 2241 2422 -440 1935 187 42 47 chrX 37124733 37125156 -125474774 - L1M4 LINE L1 -1601 4545 4124 2343 86 10 10 chrX 37125156 37125469 -125474461 + AluSp SINE Alu 1 313 0 1935 187 42 47 chrX 37125469 37125596 -125474334 - L1M4 LINE L1 -2022 4124 3998 433 223 42 42 chrX 37125685 37125878 -125474052 - L1MEc LINE L1 -3584 3060 2868 612 279 132 42 chrX 37125893 37127368 -125472562 - L1MEc LINE L1 -4001 2824 1218 1834 137 102 38 chrX 37127597 37127939 -125471991 + THE1B LTR MaLR 1 364 0 12138 84 3 2 chrX 37127939 37129518 -125470412 + THE1B-int LTR MaLR 1 1580 0 2183 125 73 14 chrX 37129518 37129862 -125470068 + THE1B LTR MaLR 1 364 0 3086 174 100 23 chrX 37131718 37132449 -125467481 - LTR48 LTR ERV1 0 787 1 897 86 0 26 chrX 37134780 37134931 -125464999 + MER4A LTR ERV1 1 147 -517 1817 123 14 21 chrX 37134957 37135314 -125464616 + MER4A LTR ERV1 252 664 0 633 230 46 65 chrX 37135314 37135531 -125464399 + MLT1F1 LTR MaLR 45 257 -285 1256 103 41 0 chrX 37135532 37135726 -125464204 - MSTA LTR MaLR 0 428 227 2339 188 140 25 chrX 37135732 37136382 -125463548 + MER50 LTR ERV1 10 734 0 1225 157 31 0 chrX 37136382 37136605 -125463325 - MSTA LTR MaLR -198 230 1 1017 203 228 0 chrX 37136605 37136851 -125463079 + MLT1F1 LTR MaLR 266 567 0 1871 189 46 66 chrX 37137169 37137729 -125462201 + MER34B LTR ERV1 17 565 0 256 219 62 0 chrX 37138111 37138175 -125461755 - L2 LINE L2 -1 3312 3245 1456 203 45 97 chrX 37138187 37138763 -125461167 - MER34C LTR ERV1 -3 582 37 514 319 82 65 chrX 37138763 37139130 -125460800 - L2 LINE L2 -73 3199 2827 2078 142 23 3 chrX 37139231 37139583 -125460347 - MLT1A1 LTR MaLR -6 359 1 1019 255 76 83 chrX 37139818 37140145 -125459785 - L1MEc LINE L1 -5837 705 377 2293 113 0 0 chrX 37140145 37140446 -125459484 - AluSx SINE Alu -11 301 1 1019 255 76 83 chrX 37140446 37140813 -125459117 - L1MEc LINE L1 -6165 377 16 4164 92 2 3 chrX 37140852 37141223 -125458707 - L1PB1 LINE L1 -4 6147 5776 336 102 0 0 chrX 37141223 37141272 -125458658 + (CA)n Simple_repeat Simple_repeat 2 50 0 4164 92 2 3 chrX 37141272 37141485 -125458445 - L1PB1 LINE L1 -375 5776 5564 6429 84 39 8 chrX 37141506 37142563 -125457367 - L1PBa LINE L1 -4115 2748 1660 4986 153 64 29 chrX 37142560 37143795 -125456135 - L1PBa LINE L1 -5438 1425 3 * 189 107 0 0 chrX 37144000 37144028 -125455902 + (TA)n Simple_repeat Simple_repeat 2 29 0 26 30 0 0 chrX 37144177 37144210 -125455720 + AT_rich Low_complexity Low_complexity 1 33 0 1360 109 28 0 chrX 37144425 37144636 -125455294 + L1PA13 LINE L1 5942 6158 -5 246 128 0 0 chrX 37144888 37144927 -125455003 + (TCCCC)n Simple_repeat Simple_repeat 2 40 0 1578 183 33 7 chrX 37144940 37145213 -125454717 - AluJo SINE Alu -32 280 1 2251 92 3 41 chrX 37145267 37145583 -125454347 - AluSc SINE Alu -5 304 1 264 289 113 0 chrX 37145932 37146029 -125453901 + MIR SINE MIR 52 159 -103 347 347 31 0 chrX 37146155 37146253 -125453677 + MER91A DNA MER1_type 95 195 -1 568 309 105 25 chrX 37146732 37147056 -125452874 + LTR16A LTR ERVL 96 445 -5 2249 90 0 0 chrX 37147090 37147401 -125452529 + AluSc SINE Alu 1 311 0 458 259 29 35 chrX 37147425 37147599 -125452331 + MLT1J LTR MaLR 8 180 -331 378 269 48 14 chrX 37147982 37148127 -125451803 + MIR SINE MIR 86 235 -27 1274 298 17 5 chrX 37148370 37148786 -125451144 - LTR16A LTR ERVL -2 448 28 209 122 49 0 chrX 37149604 37149645 -125450285 + (TATG)n Simple_repeat Simple_repeat 3 45 0 207 368 103 17 chrX 37149650 37149767 -125450163 - MIR3 SINE MIR -67 141 15 534 238 11 43 chrX 37150060 37150245 -125449685 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 577 253 100 0 chrX 37150617 37150767 -125449163 + MER58C DNA MER1_type 1 165 -50 1493 251 17 47 chrX 37150864 37151330 -125448600 - LTR16A1 LTR ERVL -2 455 4 499 159 63 32 chrX 37151874 37152000 -125447930 - L1MC3 LINE L1 0 7785 7656 2436 188 33 9 chrX 37152004 37152553 -125447377 - L1MC3 LINE L1 -1167 6618 6057 389 208 21 10 chrX 37152554 37152650 -125447280 + L1MC2 LINE L1 5928 6024 -320 3323 249 44 36 chrX 37152684 37154090 -125445840 - L1MCb LINE L1 -2537 4027 2634 2119 134 16 3 chrX 37154090 37154396 -125445534 - AluSx SINE Alu -2 310 1 3323 249 44 36 chrX 37154396 37156782 -125443148 - L1MCb LINE L1 -3930 2634 61 2414 75 0 3 chrX 37156782 37157075 -125442855 - AluSg SINE Alu -18 292 1 3323 249 44 36 chrX 37157075 37157137 -125442793 - L1MCb LINE L1 -6503 61 1 231 277 108 78 chrX 37157696 37157794 -125442136 - MLT1L LTR MaLR -80 535 429 2386 87 0 16 chrX 37157794 37158104 -125441826 + AluSx SINE Alu 1 305 -7 231 277 108 78 chrX 37158104 37158171 -125441759 - MLT1L LTR MaLR -186 429 365 430 345 15 13 chrX 37158613 37158955 -125440975 - LTR16B LTR ERVL 0 464 51 896 307 70 34 chrX 37159150 37159651 -125440279 + LTR33 LTR ERVL 3 521 0 386 323 93 71 chrX 37159809 37160119 -125439811 - L2 LINE L2 0 3272 2956 247 350 76 59 chrX 37160190 37160427 -125439503 - L2 LINE L2 -520 2794 2554 25 0 0 0 chrX 37161288 37161313 -125438617 + AT_rich Low_complexity Low_complexity 1 25 0 428 289 58 35 chrX 37161323 37161669 -125438261 + L1ME LINE L1 5378 5731 -390 183 80 0 0 chrX 37161768 37161793 -125438137 + (TA)n Simple_repeat Simple_repeat 1 25 0 236 268 14 14 chrX 37162021 37162092 -125437838 - LTR33 LTR ERVL -306 215 145 830 290 105 29 chrX 37162425 37163176 -125436754 - ERVL LTR ERVL -387 5377 4511 387 0 0 0 chrX 37163176 37163219 -125436711 + (TA)n Simple_repeat Simple_repeat 2 44 0 830 290 105 29 chrX 37163219 37163288 -125436642 - ERVL LTR ERVL -1253 4511 4449 298 319 17 0 chrX 37163329 37163445 -125436485 - ERVL LTR ERVL -756 5008 4891 6435 158 34 33 chrX 37163581 37164964 -125434966 - L1MC3 LINE L1 0 7785 6402 1318 193 81 62 chrX 37164964 37165322 -125434608 + MLT1A1 LTR MaLR 1 365 0 7489 211 36 38 chrX 37165366 37167082 -125432848 + MLT1A1-int LTR MaLR 23 1735 0 1527 188 73 48 chrX 37167082 37167438 -125432492 + MLT1A1 LTR MaLR 1 365 0 1972 191 68 11 chrX 37167442 37167914 -125432016 - L1MC3 LINE L1 -1383 6402 5904 1891 244 42 36 chrX 37167916 37168445 -125431485 + MLT2B3 LTR ERVL 3 534 -20 198 103 0 0 chrX 37168445 37168474 -125431456 + (TCTCCC)n Simple_repeat Simple_repeat 5 33 0 246 111 0 0 chrX 37168490 37168526 -125431404 + MLT2C2 LTR ERVL 429 464 0 7827 196 30 13 chrX 37168526 37169741 -125430189 + ERVL-C2 LTR ERVL 1 1193 -4571 2158 106 0 20 chrX 37169741 37170034 -125429896 + AluSp SINE Alu 1 287 -26 387 0 0 0 chrX 37170034 37170077 -125429853 + (CA)n Simple_repeat Simple_repeat 2 44 0 7827 196 30 13 chrX 37170077 37170418 -125429512 + ERVL-C2 LTR ERVL 1192 1585 -4179 1497 263 40 23 chrX 37170418 37170512 -125429418 - L2 LINE L2 -1009 2305 2214 1919 188 121 38 chrX 37170512 37170554 -125429376 - MLT2B1 LTR ERVL 0 520 483 351 0 0 0 chrX 37170554 37170593 -125429337 + (CA)n Simple_repeat Simple_repeat 2 40 0 1919 188 121 38 chrX 37170593 37171030 -125428900 - MLT2B1 LTR ERVL -37 483 1 1497 263 40 23 chrX 37171030 37171365 -125428565 - L2 LINE L2 -1100 2214 1869 231 250 18 18 chrX 37171519 37171575 -125428355 + MIR SINE MIR 95 150 -58 230 355 40 0 chrX 37172035 37172159 -125427771 + HAL1 LINE L1 537 665 -1842 1857 97 0 4 chrX 37222189 37222427 -125377503 - AluSx SINE Alu -75 237 1 2338 199 0 4 chrX 37222427 37222899 -125377031 + L1PB4 LINE L1 5686 6155 -1 707 301 112 19 chrX 37222954 37223479 -125376451 - L1ME3 LINE L1 -260 5902 5329 32 26 0 0 chrX 37223563 37223602 -125376328 + AT_rich Low_complexity Low_complexity 1 39 0 553 278 0 0 chrX 37223907 37224069 -125375861 - HAL1 LINE L1 -870 1637 1476 633 248 21 16 chrX 37224118 37224360 -125375570 - HAL1 LINE L1 -1133 1374 1132 1339 141 25 0 chrX 37224448 37224690 -125375240 - L1MA6 LINE L1 -1288 4858 4611 2813 141 48 35 chrX 37224693 37225974 -125373956 + L1MA6 LINE L1 4871 6251 -49 1750 169 3 36 chrX 37225974 37226282 -125373648 + AluJo SINE Alu 1 298 -14 2813 141 48 35 chrX 37226282 37226333 -125373597 + L1MA6 LINE L1 6251 6300 0 197 254 48 16 chrX 37226433 37226496 -125373434 - MIR SINE MIR -98 164 100 25 51 0 0 chrX 37227083 37227122 -125372808 + AT_rich Low_complexity Low_complexity 1 39 0 1855 151 17 86 chrX 37227252 37227669 -125372261 - MLT1B LTR MaLR -2 388 1 610 273 22 52 chrX 37227736 37227862 -125372068 - L1ME3A LINE L1 -221 5949 5821 1424 102 0 0 chrX 37227862 37228078 -125371852 - L1MA5A LINE L1 -4 6293 6078 610 273 22 52 chrX 37228078 37228318 -125371612 - L1ME3A LINE L1 -349 5821 5594 909 247 141 26 chrX 37228366 37228819 -125371111 + MLT1J LTR MaLR 3 507 -4 1491 129 21 135 chrX 37228936 37229276 -125370654 - AluYb8 SINE Alu -17 301 1 922 301 37 32 chrX 37229757 37230062 -125369868 - MLT1J2 LTR MaLR -37 413 104 966 308 28 36 chrX 37230062 37230530 -125369400 + LTR16B LTR ERVL 1 464 0 922 301 37 32 chrX 37230530 37230633 -125369297 - MLT1J2 LTR MaLR -346 104 3 309 235 1 55 chrX 37230638 37230798 -125369132 - L1ME LINE L1 -333 5829 5683 * 661 180 0 19 chrX 37230793 37230954 -125368976 + L1 LINE L1 4226 4383 -1763 20259 174 18 10 chrX 37230958 37233475 -125366455 + L1MA2 LINE L1 20 2515 -5050 2432 100 3 0 chrX 37233475 37233785 -125366145 + AluSp SINE Alu 1 311 -2 20259 174 18 10 chrX 37233785 37237254 -125362676 + L1MA2 LINE L1 2515 6056 -1509 5099 100 5 0 chrX 37237251 37238014 -125361916 + L1PA13 LINE L1 5397 6163 0 * 6727 124 41 9 chrX 37238003 37239630 -125360300 + L1MA2 LINE L1 6042 7720 -3 1223 179 13 80 chrX 37239661 37240035 -125359895 + L1 LINE L1 4377 4725 -1421 * 5132 157 12 7 chrX 37240033 37241274 -125358656 + L1PA16 LINE L1 4901 6145 -21 497 307 18 35 chrX 37241281 37241530 -125358400 - L1MC/D LINE L1 -496 5674 5439 245 321 27 9 chrX 37241949 37242061 -125357869 + (CATATA)n Simple_repeat Simple_repeat 4 117 0 219 204 0 0 chrX 37242063 37242112 -125357818 + (TG)n Simple_repeat Simple_repeat 2 50 0 275 244 0 67 chrX 37243079 37243169 -125356761 - L2 LINE L2 -1 3271 3188 1493 187 30 50 chrX 37244263 37244313 -125355617 - MLT1A2 LTR MaLR -17 357 308 2287 107 0 22 chrX 37244313 37244630 -125355300 - AluSx SINE Alu -2 310 1 1493 187 30 50 chrX 37244630 37244943 -125354987 - MLT1A2 LTR MaLR -66 308 1 721 307 8 12 chrX 37245197 37245451 -125354479 + MER90 LTR ERV1 1 253 -361 671 222 0 7 chrX 37245448 37245592 -125354338 + MER90 LTR ERV1 362 504 -110 * 2336 161 60 2 chrX 37246585 37246988 -125352942 + MSTB LTR MaLR 1 426 0 8941 165 47 4 chrX 37246988 37248571 -125351359 + MSTB-int LTR MaLR 1 1651 0 2420 165 54 2 chrX 37248571 37248976 -125350954 + MSTB LTR MaLR 1 426 0 773 239 103 4 chrX 37249007 37249241 -125350689 + MIR SINE MIR 3 259 -3 29 0 0 0 chrX 37249362 37249391 -125350539 + AT_rich Low_complexity Low_complexity 1 29 0 3863 158 59 1 chrX 37249580 37250296 -125349634 - MSTA-int LTR MaLR -894 757 1 2179 120 141 5 chrX 37250297 37250673 -125349257 - MSTA LTR MaLR -1 427 1 1159 265 65 22 chrX 37250680 37251050 -125348880 + MLT1I LTR MaLR 24 409 0 673 235 13 13 chrX 37251782 37251935 -125347995 - MER5B DNA MER1_type -6 172 20 1062 257 23 13 chrX 37251937 37252237 -125347693 - LTR16A LTR ERVL -7 443 141 2320 99 0 0 chrX 37252271 37252573 -125347357 - AluSg SINE Alu -8 302 1 22 35 0 0 chrX 37252654 37252683 -125347247 + AT_rich Low_complexity Low_complexity 1 29 0 730 256 62 50 chrX 37252701 37252959 -125346971 + MIR SINE MIR 2 262 0 2283 122 0 0 chrX 37253130 37253442 -125346488 + AluSx SINE Alu 1 312 0 1982 124 6 44 chrX 37253531 37253846 -125346084 + AluJb SINE Alu 3 305 -7 201 300 111 0 chrX 37253856 37253946 -125345984 - L2 LINE L2 -349 2923 2824 2106 221 76 73 chrX 37253960 37254752 -125345178 + MER21B LTR ERV1 12 805 -58 1389 262 11 47 chrX 37254901 37255344 -125344586 + LTR16A LTR ERVL 22 448 -2 2476 62 3 0 chrX 37255616 37255908 -125344022 + AluSc SINE Alu 1 293 -16 692 324 26 16 chrX 37256044 37256427 -125343503 - L1M4 LINE L1 -2685 3461 3075 258 32 0 0 chrX 37256484 37256515 -125343415 + (TG)n Simple_repeat Simple_repeat 2 32 0 455 300 69 46 chrX 37256644 37257037 -125342893 + L1MC4a LINE L1 4151 4552 -1594 198 118 0 0 chrX 37257053 37257087 -125342843 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chrX 37257088 37257116 -125342814 + AT_rich Low_complexity Low_complexity 1 28 0 508 284 73 51 chrX 37257122 37257686 -125342244 + L1MC4a LINE L1 4630 5205 -941 252 295 45 9 chrX 37258289 37258401 -125341529 - HERV16 LTR ERVL -1202 3794 3679 2876 328 29 11 chrX 37258433 37259181 -125340749 - HERV16 LTR ERVL -3583 1413 631 2289 71 44 0 chrX 37259181 37259475 -125340455 + AluY SINE Alu 1 307 -4 2876 328 29 11 chrX 37259475 37260007 -125339923 - HERV16 LTR ERVL -4365 631 110 1074 243 60 13 chrX 37260111 37260428 -125339502 - LTR16B LTR ERVL -4 460 129 353 259 28 19 chrX 37260598 37260706 -125339224 - LTR67 LTR ERVL 0 557 449 670 195 0 8 chrX 37260945 37261063 -125338867 - LTR28 LTR ERV1 -903 117 1 331 295 98 9 chrX 37261137 37261249 -125338681 - LTR67 LTR ERVL -400 157 36 299 353 25 5 chrX 37261313 37261517 -125338413 + L1MC4a LINE L1 5699 5906 -1902 2870 232 90 27 chrX 37261964 37262711 -125337219 + MER21B LTR ERV1 1 794 -69 2279 98 0 3 chrX 37263179 37263475 -125336455 - AluSq SINE Alu -17 296 2 758 323 56 46 chrX 37263690 37264102 -125335828 + LTR16C LTR ERVL 76 491 0 2782 247 48 19 chrX 37266788 37267557 -125332373 - L1ME1 LINE L1 -53 6113 5323 860 163 0 0 chrX 37267566 37267719 -125332211 - L1MD1 LINE L1 -8 6234 6082 22 0 0 0 chrX 37267739 37267761 -125332169 + AT_rich Low_complexity Low_complexity 1 22 0 6578 229 46 13 chrX 37267778 37270416 -125329514 - L1MD1 LINE L1 -454 5905 3177 240 111 0 0 chrX 37270784 37270820 -125329110 + MLT1B LTR MaLR 1 36 -354 1052 174 31 10 chrX 37271319 37271514 -125328416 - MER3 DNA MER1_type -10 199 1 412 221 75 79 chrX 37271753 37272007 -125327923 - L1ME4a LINE L1 -216 5905 5653 2381 178 26 5 chrX 37272626 37273043 -125326887 - MSTB LTR MaLR 0 426 1 974 157 35 12 chrX 37273646 37273672 -125326258 + MER3 DNA MER1_type 24 53 -156 368 227 70 76 chrX 37273672 37273844 -125326086 - MER3 DNA MER1_type 0 209 39 838 263 59 24 chrX 37275884 37276139 -125323791 - LTR16A LTR ERVL 0 450 187 2253 85 0 3 chrX 37277115 37277419 -125322511 - AluSx SINE Alu 0 303 1 24 32 0 0 chrX 37277701 37277732 -125322198 + AT_rich Low_complexity Low_complexity 1 31 0 694 219 0 0 chrX 37278140 37278268 -125321662 - MER2 DNA MER2_type -190 155 28 947 246 127 29 chrX 37278304 37278650 -125321280 + L1M4 LINE L1 155 534 -5862 688 200 0 21 chrX 37278677 37278817 -125321113 + AluJo SINE Alu 1 137 -175 211 194 0 0 chrX 37278817 37278853 -125321077 + (TAAG)n Simple_repeat Simple_repeat 1 36 0 1042 217 22 11 chrX 37278853 37279125 -125320805 + L1M4 LINE L1 570 844 -5552 3745 202 46 11 chrX 37279137 37280228 -125319702 + L1M4 LINE L1 4451 5579 -674 725 226 43 26 chrX 37280224 37280454 -125319476 + L1MEc LINE L1 1749 1982 -4414 * 791 247 92 64 chrX 37280442 37280512 -125319418 + L1MDa LINE L1 121 188 -6352 234 0 0 0 chrX 37280512 37280538 -125319392 + (TG)n Simple_repeat Simple_repeat 2 27 0 791 247 92 64 chrX 37280538 37280613 -125319317 + L1MDa LINE L1 188 259 -6281 180 0 0 0 chrX 37280613 37280633 -125319297 + (CAA)n Simple_repeat Simple_repeat 2 21 0 791 247 92 64 chrX 37280633 37280814 -125319116 + L1MDa LINE L1 259 457 -6083 245 311 38 61 chrX 37280863 37280995 -125318935 - MER39 LTR ERV1 -319 388 260 238 223 75 43 chrX 37280969 37281063 -125318867 - LTR48B LTR ERV1 -544 100 4 * 644 247 88 0 chrX 37281063 37281257 -125318673 + L1MC4a LINE L1 6248 6458 -1350 515 203 48 52 chrX 37281269 37281516 -125318414 + MER58 DNA MER1_type 2 2419 -1 850 224 87 9 chrX 37281516 37281735 -125318195 + L1MC3 LINE L1 6437 6672 -1113 16344 216 16 17 chrX 37282025 37287547 -125312383 - L1PA15 LINE L1 0 6816 1286 252 0 0 0 chrX 37287589 37287617 -125312313 + (TG)n Simple_repeat Simple_repeat 1 28 0 2301 317 36 22 chrX 37287624 37288529 -125311401 - L1PA15 LINE L1 -5869 918 1 294 167 0 19 chrX 37289588 37289642 -125310288 - Tigger5 DNA MER2_type 0 2323 2271 348 171 0 110 chrX 37289655 37289737 -125310193 - Tigger5 DNA MER2_type -2248 75 3 2037 131 133 16 chrX 37290007 37290390 -125309540 - MSTA LTR MaLR 0 428 1 8857 145 10 64 chrX 37290390 37292059 -125307871 - MSTA-int LTR MaLR 0 1580 3 1578 147 96 14 chrX 37292061 37292338 -125307592 - MSTA LTR MaLR 0 428 128 1747 131 4 4 chrX 37292338 37292597 -125307333 - THE1C LTR MaLR 0 375 117 337 179 43 10 chrX 37292594 37292694 -125307236 - LTR29 LTR ERV1 -90 617 452 * 31 0 0 0 chrX 37292694 37292725 -125307205 + AT_rich Low_complexity Low_complexity 1 31 0 424 287 23 8 chrX 37292763 37292892 -125307038 - MLT1I LTR MaLR -270 139 9 334 304 58 52 chrX 37292898 37293071 -125306859 + L1M4 LINE L1 3422 3592 -2554 6123 90 21 3 chrX 37293071 37294293 -125305637 + L1PA13 LINE L1 4924 6161 -2 334 304 58 52 chrX 37294293 37294566 -125305364 + L1M4 LINE L1 3592 3871 -2275 234 176 20 0 chrX 37294572 37294623 -125305307 - LTR66 LTR ERVL -166 444 393 471 291 45 27 chrX 37294736 37294956 -125304974 + L1M4 LINE L1 4025 4248 -1898 22866 180 20 21 chrX 37294959 37296236 -125303694 + L1PA11 LINE L1 20 1296 -6316 200 35 35 0 chrX 37296236 37296265 -125303665 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22866 180 20 21 chrX 37296265 37300875 -125299055 + L1PA11 LINE L1 1296 6983 -629 2327 81 10 0 chrX 37300875 37301171 -125298759 - AluY SINE Alu -12 299 1 22866 180 20 21 chrX 37301171 37301799 -125298131 + L1PA11 LINE L1 6983 7610 -2 561 251 130 69 chrX 37301905 37302267 -125297663 - MER34 LTR ERV1 0 542 159 2204 103 0 13 chrX 37302293 37302594 -125297336 - AluSc SINE Alu -10 299 3 2474 122 42 4 chrX 37302595 37303047 -125296883 - MER34B LTR ERV1 -31 534 1 347 336 68 0 chrX 37303047 37303193 -125296737 - MER34 LTR ERV1 -380 162 7 1163 208 14 58 chrX 37303234 37303348 -125296582 + L1ME2 LINE L1 5789 5906 -258 1837 216 92 33 chrX 37303348 37303858 -125296072 - MLT1F LTR MaLR -2 540 1 1163 208 14 58 chrX 37303858 37304090 -125295840 + L1ME2 LINE L1 5906 6120 -44 2268 105 0 0 chrX 37304110 37304406 -125295524 - AluSx SINE Alu -16 296 1 1852 131 47 7 chrX 37304557 37304832 -125295098 + AluJb SINE Alu 1 286 -26 838 249 160 21 chrX 37304888 37305376 -125294554 + L1ME3A LINE L1 5397 5957 -205 314 261 158 0 chrX 37306193 37306358 -125293572 + L1ME3A LINE L1 5731 5921 -249 661 270 74 46 chrX 37307262 37307649 -125292281 + LTR16A1 LTR ERVL 73 444 -13 1393 188 95 35 chrX 37308769 37309136 -125290794 - MLT1C LTR MaLR 0 467 79 438 319 75 46 chrX 37309173 37309507 -125290423 - LTR16A1 LTR ERVL -8 482 126 2352 104 0 0 chrX 37309605 37309903 -125290027 + AluSx SINE Alu 1 298 -14 1828 137 68 41 chrX 37309948 37310313 -125289617 + THE1C LTR MaLR 1 375 0 1461 234 168 78 chrX 37310544 37310983 -125288947 - MER66A LTR ERV1 -1 599 97 429 258 32 58 chrX 37311959 37312114 -125287816 - MIR SINE MIR -22 240 90 231 191 0 0 chrX 37312118 37312160 -125287770 + MER105 DNA DNA 1 42 -162 * 648 252 26 0 chrX 37312159 37312310 -125287620 - MER105 DNA DNA -42 162 8 434 245 7 52 chrX 37312781 37312936 -125286994 + Charlie7 DNA MER1_type 513 660 -1952 1509 210 92 0 chrX 37312958 37313272 -125286658 - MER2 DNA MER2_type -2 343 1 1897 161 39 6 chrX 37313288 37313624 -125286306 + MER7A DNA MER2_type 1 345 -1 226 268 21 21 chrX 37313743 37313885 -125286045 + (TA)n Simple_repeat Simple_repeat 1 142 0 723 241 86 0 chrX 37314670 37314844 -125285086 + MIR SINE MIR 47 235 -27 3288 128 48 77 chrX 37314948 37315132 -125284798 - LTR29 LTR ERV1 0 622 434 1598 175 28 7 chrX 37315132 37315418 -125284512 - AluJo SINE Alu -20 292 1 3288 128 48 77 chrX 37315418 37315750 -125284180 - LTR29 LTR ERV1 -188 434 125 2407 72 3 0 chrX 37315750 37316043 -125283887 - AluSp SINE Alu -18 295 2 3288 128 48 77 chrX 37316043 37316165 -125283765 - LTR29 LTR ERV1 -497 125 1 3619 113 11 9 chrX 37316333 37316881 -125283049 - MER34C LTR ERV1 0 585 37 368 198 42 172 chrX 37317309 37317501 -125282429 + MIR SINE MIR 96 262 0 486 279 14 27 chrX 37317980 37318127 -125281803 + MIR SINE MIR 74 218 -44 21 57 0 0 chrX 37318135 37318170 -125281760 + AT_rich Low_complexity Low_complexity 1 35 0 929 165 51 0 chrX 37318170 37318346 -125281584 - MER31A LTR ERV1 0 485 301 7306 205 4 6 chrX 37318347 37319928 -125280002 + L1 LINE L1 2285 3862 -2284 5421 150 48 113 chrX 37319937 37321239 -125278691 - MER61C-int LTR ERV1 -3577 1640 455 1972 177 11 0 chrX 37321239 37321590 -125278340 - THE1A LTR MaLR 0 355 1 5421 150 48 113 chrX 37321590 37321845 -125278085 - MER61C-int LTR ERV1 -4762 455 185 254 200 67 22 chrX 37321868 37321958 -125277972 - MER61C-int LTR ERV1 -6609 482 389 616 222 49 21 chrX 37321960 37322104 -125277826 - MER61C-int LTR ERV1 -5068 149 2 2428 125 47 21 chrX 37322104 37322527 -125277403 - MER61C LTR ERV1 0 434 1 548 271 101 23 chrX 37322622 37322713 -125277217 + MIR SINE MIR 11 93 -169 1619 189 16 45 chrX 37322713 37323089 -125276841 + MLT1A1 LTR MaLR 1 365 0 548 271 101 23 chrX 37323089 37323215 -125276715 + MIR SINE MIR 93 245 -17 885 246 101 43 chrX 37323257 37323602 -125276328 + MLT1A1 LTR MaLR 1 365 0 367 304 164 0 chrX 37323835 37324006 -125275924 + MER110 LTR ERV1 165 363 -128 2146 143 0 0 chrX 37324009 37324316 -125275614 - AluSx SINE Alu -5 307 1 1049 288 132 22 chrX 37324327 37324775 -125275155 + L2 LINE L2 2809 3305 -8 2792 77 5 11 chrX 37324821 37325196 -125274734 + THE1C LTR MaLR 3 375 0 196 214 48 0 chrX 37325378 37325420 -125274510 + L2 LINE L2 2715 2758 -556 1114 210 9 31 chrX 37325424 37325653 -125274277 + MER58A DNA MER1_type 1 224 0 2561 119 12 20 chrX 37325751 37326153 -125273777 - MER39B LTR ERV1 0 653 255 7285 48 0 0 chrX 37326160 37327440 -125272490 - L1PA5 LINE L1 0 6154 4873 642 43 0 0 chrX 37327440 37327533 -125272397 + L1P LINE L1 3211 3303 -2843 1306 133 80 49 chrX 37327533 37327796 -125272134 - MER39B LTR ERV1 -378 275 5 560 273 91 0 chrX 37327800 37327976 -125271954 + MIR SINE MIR 52 243 -19 227 274 157 20 chrX 37328715 37328868 -125271062 + MIR SINE MIR 67 240 -22 1286 255 54 22 chrX 37329206 37329727 -125270203 - MLT1E LTR MaLR -5 588 1 531 246 0 17 chrX 37329816 37329934 -125269996 + L2 LINE L2 3198 3313 0 4400 104 55 3 chrX 37331587 37332277 -125267653 + Tigger3(Golem) DNA MER2_type 2291 3016 -13 391 270 95 30 chrX 37332513 37332713 -125267217 + L2 LINE L2 3100 3312 -1 264 308 0 0 chrX 37334219 37334284 -125265646 + MIR3 SINE MIR 135 199 -9 213 383 83 11 chrX 37334282 37334462 -125265468 + L2 LINE L2 2832 3024 -248 * 191 237 220 25 chrX 37334938 37335056 -125264874 - L2 LINE L2 -9 3304 3164 201 356 58 29 chrX 37335185 37335359 -125264571 - L2 LINE L2 -338 2976 2798 5029 212 39 51 chrX 37335570 37336998 -125262932 - L1MD2 LINE L1 -1 6358 4978 180 0 0 0 chrX 37336998 37337018 -125262912 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5029 212 39 51 chrX 37337018 37338273 -125261657 - L1MD2 LINE L1 -1381 4978 3708 233 355 18 9 chrX 37339148 37339258 -125260672 - MIR SINE MIR -65 143 33 183 288 175 12 chrX 37339914 37339994 -125259936 + L2 LINE L2 3176 3268 -4 553 283 28 23 chrX 37340170 37340347 -125259583 + MIR SINE MIR 74 251 -11 229 280 60 0 chrX 37340386 37340436 -125259494 - L2 LINE L2 -18 3254 3202 478 248 41 0 chrX 37340436 37340557 -125259373 - MER119 DNA MER1_type -3 580 455 486 262 0 10 chrX 37340572 37340675 -125259255 - MER119 DNA MER1_type -481 102 1 1009 290 34 53 chrX 37341043 37341516 -125258414 + LTR16B LTR ERVL 1 464 0 2025 317 81 10 chrX 37342056 37342855 -125257075 + L2 LINE L2 1193 2048 -1266 569 259 29 29 chrX 37342917 37343087 -125256843 + L2 LINE L2 3140 3309 -4 313 233 35 35 chrX 37343678 37343764 -125256166 + MIR SINE MIR 172 257 -5 943 206 0 6 chrX 37344487 37344652 -125255278 - FAM SINE Alu -11 164 1 923 216 6 0 chrX 37344734 37344901 -125255029 + MER5A DNA MER1_type 4 171 -18 359 270 10 20 chrX 37345174 37345274 -125254656 - LTR16A LTR ERVL -9 441 343 243 306 28 89 chrX 37345292 37345472 -125254458 - LTR16A LTR ERVL -281 169 1 671 153 6 34 chrX 37346211 37346387 -125253543 + CT-rich Low_complexity Low_complexity 2 172 0 27 29 0 0 chrX 37346501 37346535 -125253395 + AT_rich Low_complexity Low_complexity 1 34 0 453 318 80 29 chrX 37346561 37346999 -125252931 + HAL1 LINE L1 17 512 -1995 948 56 6 37 chrX 37347117 37347279 -125252651 + (GAAA)n Simple_repeat Simple_repeat 2 158 0 591 224 109 102 chrX 37347284 37347470 -125252460 + HAL1 LINE L1 2044 2227 -280 3014 125 41 30 chrX 37347470 37347930 -125252000 + MER34B LTR ERV1 1 470 -95 1898 173 0 0 chrX 37347930 37348236 -125251694 - AluJb SINE Alu -6 306 1 3014 125 41 30 chrX 37348236 37348334 -125251596 + MER34B LTR ERV1 470 565 0 591 224 109 102 chrX 37348334 37348588 -125251342 + HAL1 LINE L1 2227 2487 -20 2699 93 5 11 chrX 37349569 37349946 -125249984 + THE1C LTR MaLR 1 375 0 197 268 18 18 chrX 37350599 37350655 -125249275 + MIR SINE MIR 20 75 -187 328 247 58 45 chrX 37350858 37351012 -125248918 + MIR SINE MIR 107 262 0 194 234 78 78 chrX 37351834 37351911 -125248019 - L2 LINE L2 -1 3312 3236 631 242 91 35 chrX 37352712 37352852 -125247078 - LTR16C LTR ERVL 0 491 360 1416 209 62 36 chrX 37352852 37353193 -125246737 + MLT2C1 LTR ERVL 1 332 -65 1164 34 34 0 chrX 37353193 37353402 -125246528 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 216 0 0 0 chrX 37353404 37353428 -125246502 + (TCCA)n Simple_repeat Simple_repeat 3 26 0 1416 209 62 36 chrX 37353428 37353468 -125246462 + MLT2C1 LTR ERVL 332 397 0 631 242 91 35 chrX 37353468 37353525 -125246405 - LTR16C LTR ERVL -131 360 283 225 267 0 0 chrX 37353530 37353575 -125246355 - LTR16C LTR ERVL -295 196 152 1902 150 4 0 chrX 37353778 37354058 -125245872 + AluSx SINE Alu 3 283 -29 620 271 157 0 chrX 37354441 37354651 -125245279 + MIR SINE MIR 18 260 -2 597 309 28 60 chrX 37355094 37355257 -125244673 + MIR SINE MIR 20 174 -88 765 243 114 5 chrX 37355257 37355459 -125244471 + MER58A DNA MER1_type 1 224 0 597 309 28 60 chrX 37355459 37355544 -125244386 + MIR SINE MIR 174 260 -2 506 256 40 0 chrX 37356601 37356726 -125243204 - MIR3 SINE MIR -23 185 56 971 213 10 0 chrX 37356826 37357023 -125242907 - MER115 DNA AcHobo -1 692 494 711 67 0 0 chrX 37357988 37358117 -125241813 + AluY SINE Alu 196 324 0 546 57 0 0 chrX 37358798 37358868 -125241062 + (TG)n Simple_repeat Simple_repeat 2 71 0 494 289 106 34 chrX 37359662 37360246 -125239684 + HAL1 LINE L1 1093 1718 -789 284 377 42 45 chrX 37360342 37360482 -125239448 + L2 LINE L2 2545 2684 -630 2478 73 0 9 chrX 37360482 37360798 -125239132 - AluSp SINE Alu 0 313 1 284 377 42 45 chrX 37360798 37360991 -125238939 + L2 LINE L2 2684 2877 -437 2364 235 38 26 chrX 37361494 37362078 -125237852 - MLT1E LTR MaLR 0 593 3 246 293 49 0 chrX 37362792 37362884 -125237046 - MIR SINE MIR -62 146 45 705 214 61 86 chrX 37363267 37363594 -125236336 + L1MC4 LINE L1 7723 8041 -1 379 277 9 18 chrX 37363601 37363713 -125236217 - MIR SINE MIR -86 176 66 2213 78 0 3 chrX 37364366 37364673 -125235257 + AluY SINE Alu 1 306 0 378 0 0 0 chrX 37366651 37366693 -125233237 + (TA)n Simple_repeat Simple_repeat 1 42 0 369 0 0 0 chrX 37366692 37366733 -125233197 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 216 182 23 0 chrX 37367588 37367632 -125232298 - L2 LINE L2 -1 3312 3268 269 285 52 81 chrX 37368526 37368812 -125231118 - LTR16A1 LTR ERVL 0 457 159 552 305 113 33 chrX 37370367 37371925 -125228005 - L1 LINE L1 -2325 3821 2147 229 273 99 12 chrX 37372139 37372311 -125227619 - L1M4 LINE L1 -2895 3251 3065 217 213 107 13 chrX 37372858 37372933 -125226997 + L2 LINE L2 2271 2352 -962 1484 213 12 82 chrX 37373568 37373968 -125225962 - MLT1A2 LTR MaLR -2 372 1 2164 282 18 12 chrX 37374492 37375165 -125224765 + L1ME3A LINE L1 35 711 -5685 * 2522 236 39 17 chrX 37375148 37375961 -125223969 + L1ME3A LINE L1 2725 3555 -2660 239 148 0 0 chrX 37375963 37376017 -125223913 + L1MD3 LINE L1 7942 7995 0 821 280 38 40 chrX 37376506 37376928 -125223002 + L1ME3A LINE L1 5542 5962 -277 207 0 0 0 chrX 37377129 37377152 -125222778 + (T)n Simple_repeat Simple_repeat 1 23 0 429 20 0 0 chrX 37377669 37377719 -125222211 + (TG)n Simple_repeat Simple_repeat 2 51 0 202 333 86 0 chrX 37378535 37378628 -125221302 - MIR3 SINE MIR -97 111 11 518 255 101 29 chrX 37379476 37379684 -125220246 - MIR SINE MIR -4 258 36 3103 78 49 5 chrX 37379957 37380345 -125219585 + MLT2A1 LTR ERVL 1 411 -33 258 32 0 0 chrX 37380345 37380376 -125219554 + (CA)n Simple_repeat Simple_repeat 1 31 0 3103 78 49 5 chrX 37380376 37380412 -125219518 + MLT2A1 LTR ERVL 411 444 0 4080 139 108 123 chrX 37380699 37380748 -125219182 + L1MC3 LINE L1 6711 6759 -1026 2260 125 0 0 chrX 37380748 37381060 -125218870 + AluSx SINE Alu 1 312 0 4080 139 108 123 chrX 37381060 37381411 -125218519 + L1MC3 LINE L1 6759 7114 -671 402 265 20 0 chrX 37381411 37381509 -125218421 + MLT1F1 LTR MaLR 35 134 -433 4080 139 108 123 chrX 37381509 37382091 -125217839 + L1MC3 LINE L1 7114 7775 -10 464 261 8 15 chrX 37383089 37383223 -125216707 - MER94 DNA DNA 0 134 2 301 279 13 0 chrX 37384773 37384852 -125215078 + MIR3 SINE MIR 104 183 -25 297 0 0 0 chrX 37386256 37386289 -125213641 + (CA)n Simple_repeat Simple_repeat 2 34 0 287 246 14 0 chrX 37386813 37386882 -125213048 - LTR16A LTR ERVL 0 450 381 663 238 85 40 chrX 37386883 37387106 -125212824 - LTR16A LTR ERVL -189 261 29 305 294 74 18 chrX 37387170 37387333 -125212597 - HAL1b LINE L1 -867 481 310 223 234 0 0 chrX 37388221 37388268 -125211662 + (TG)n Simple_repeat Simple_repeat 2 48 0 848 271 94 51 chrX 37388680 37389171 -125210759 + LTR33A LTR ERVL 1 512 -11 2321 245 37 37 chrX 37389691 37390331 -125209599 - MER77 LTR ERV1 -3 602 54 225 188 0 0 chrX 37390976 37391024 -125208906 + (TA)n Simple_repeat Simple_repeat 2 49 0 264 154 0 0 chrX 37391376 37391428 -125208502 + (CA)n Simple_repeat Simple_repeat 2 53 0 835 275 97 37 chrX 37391868 37392272 -125207658 - MLT1J2 LTR MaLR -2 448 21 993 266 68 37 chrX 37393089 37393603 -125206327 + MLT1G3 LTR MaLR 1 559 -8 316 321 65 24 chrX 37394026 37394194 -125205736 + MIR SINE MIR 78 252 -10 373 251 139 12 chrX 37394338 37394503 -125205427 + MIR SINE MIR 18 202 -60 2397 99 0 10 chrX 37394637 37394950 -125204980 + AluSx SINE Alu 1 310 -2 30 45 0 0 chrX 37396415 37396459 -125203471 + AT_rich Low_complexity Low_complexity 1 44 0 979 289 89 42 chrX 37396690 37397282 -125202648 - L1ME3A LINE L1 -217 5936 5317 1479 273 75 20 chrX 37397287 37397701 -125202229 + LTR48B LTR ERV1 107 556 -88 1865 122 0 0 chrX 37397701 37397956 -125201974 + AluSg SINE Alu 37 291 -19 1479 273 75 20 chrX 37397956 37398051 -125201879 + LTR48B LTR ERV1 556 644 0 295 297 73 29 chrX 37398056 37398329 -125201601 - L1ME3A LINE L1 -3139 2990 2706 653 312 81 46 chrX 37398473 37398715 -125201215 - L1MEd LINE L1 -5070 1059 827 2244 101 0 13 chrX 37398715 37399013 -125200917 + AluSq SINE Alu 1 294 -19 653 312 81 46 chrX 37399013 37399296 -125200634 - L1MEd LINE L1 -5302 827 529 511 227 52 34 chrX 37449310 37449473 -125150457 - L1ME LINE L1 -580 5586 5422 1829 126 36 27 chrX 37449473 37449774 -125150156 - AluJo SINE Alu -8 304 1 511 227 52 34 chrX 37449774 37449817 -125150113 - L1ME LINE L1 -744 5422 5381 717 295 11 0 chrX 37449845 37450113 -125149817 - L1ME LINE L1 -3126 3020 2750 427 308 124 49 chrX 37450277 37450663 -125149267 + L1M4 LINE L1 2779 3193 -2953 407 241 47 99 chrX 37450676 37450867 -125149063 - MLT1J2 LTR MaLR 0 450 270 355 350 6 17 chrX 37451103 37451283 -125148647 + L1M4 LINE L1 3251 3428 -2718 912 196 105 40 chrX 37451298 37451594 -125148336 - MER39 LTR ERV1 0 707 393 660 170 21 50 chrX 37451611 37451752 -125148178 + MER34C LTR ERV1 323 459 -126 1252 222 48 4 chrX 37451752 37452022 -125147908 - MER4D LTR ERV1 0 903 622 22 35 0 0 chrX 37452169 37452198 -125147732 + AT_rich Low_complexity Low_complexity 1 29 0 379 132 0 0 chrX 37452207 37452260 -125147670 + LTR23-int LTR ERV1 3732 3784 -1433 451 125 0 12 chrX 37452341 37452421 -125147509 + LTR23-int LTR ERV1 1500 1578 -3545 811 204 2 37 chrX 37452428 37452630 -125147300 + MER61E LTR ERV1 347 779 0 2858 227 54 36 chrX 37452799 37453848 -125146082 + LTR23-int LTR ERV1 756 2646 -3685 487 254 148 6 chrX 37453850 37454019 -125145911 + MER34C LTR ERV1 160 352 -233 1639 179 103 92 chrX 37454020 37454177 -125145753 + LTR23-int LTR ERV1 1169 1323 -3800 1787 161 20 17 chrX 37454177 37454475 -125145455 + AluSx SINE Alu 1 299 -13 1639 179 103 92 chrX 37454475 37454554 -125145376 + LTR23-int LTR ERV1 1323 1400 -3723 2219 111 3 0 chrX 37454554 37454851 -125145079 + AluSc SINE Alu 1 298 -11 1639 179 103 92 chrX 37454851 37455187 -125144743 + LTR23-int LTR ERV1 1400 1748 -3375 706 62 0 21 chrX 37455287 37455383 -125144547 + MER11D LTR ERVK 804 897 0 1574 180 50 0 chrX 37455425 37455581 -125144349 - AluJo SINE Alu -20 292 114 213 65 0 0 chrX 37455581 37455612 -125144318 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1574 180 50 0 chrX 37455612 37455733 -125144197 - AluJo SINE Alu -198 114 1 1740 83 0 0 chrX 37456069 37456285 -125143645 + AluSc SINE Alu 84 299 -10 594 220 15 8 chrX 37457184 37457316 -125142614 + MER94 DNA DNA 1 133 -1 8535 104 16 37 chrX 37458204 37458619 -125141311 + HSMAR2 DNA Mariner 1 423 -879 1965 111 117 27 chrX 37458619 37458953 -125140977 + THE1B LTR MaLR 1 364 0 12149 76 8 1 chrX 37458953 37460522 -125139408 + THE1B-int LTR MaLR 1 1580 0 2372 127 8 24 chrX 37460522 37460892 -125139038 + THE1B LTR MaLR 1 364 0 8535 104 16 37 chrX 37460892 37461554 -125138376 + HSMAR2 DNA Mariner 421 1095 -207 1672 174 7 14 chrX 37461554 37461835 -125138095 + AluJo SINE Alu 4 282 -30 207 0 0 0 chrX 37461838 37461861 -125138069 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8535 104 16 37 chrX 37461861 37462105 -125137825 + HSMAR2 DNA Mariner 1097 1301 -1 1890 202 8 11 chrX 37462760 37463126 -125136804 - MLT1A1 LTR MaLR 0 365 1 293 305 36 24 chrX 37463300 37463488 -125136442 - MLT1I LTR MaLR 0 422 267 2023 233 89 43 chrX 37465119 37465725 -125134205 + MER21B LTR ERV1 19 652 -211 316 241 49 28 chrX 37466016 37466124 -125133806 + MER5A DNA MER1_type 70 189 0 361 219 79 72 chrX 37467115 37467380 -125132550 + HAL1 LINE L1 848 1114 -1393 1841 94 11 11 chrX 37467675 37467940 -125131990 - L1PA11 LINE L1 0 6174 5910 1031 211 68 48 chrX 37467992 37468347 -125131583 + L1M1 LINE L1 3251 3612 -3953 * 2618 29 0 0 chrX 37468339 37468652 -125131278 - L1HS LINE L1 -1081 5065 4753 7810 9 3 2 chrX 37468652 37469728 -125130202 + L1HS LINE L1 5063 6139 -16 266 98 20 0 chrX 37469728 37469779 -125130151 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 225 0 0 0 chrX 37469916 37469941 -125129989 + (A)n Simple_repeat Simple_repeat 1 25 0 12346 186 33 22 chrX 37469941 37471440 -125128490 + L1MDa LINE L1 2570 4051 -2489 186 71 0 0 chrX 37471440 37471468 -125128462 + (CAA)n Simple_repeat Simple_repeat 3 30 0 12346 186 33 22 chrX 37471468 37471551 -125128379 + L1MDa LINE L1 4051 4132 -2408 1886 141 61 3 chrX 37471551 37471877 -125128053 + L1PB3 LINE L1 5803 6147 -7 12346 186 33 22 chrX 37471877 37473107 -125126823 + L1MDa LINE L1 4132 5411 -1129 4463 49 0 0 chrX 37473106 37473658 -125126272 - L1P LINE L1 -1191 4955 4404 * 486 254 124 64 chrX 37474211 37474667 -125125263 - L1MC5 LINE L1 -58 7903 7397 2008 143 42 66 chrX 37474667 37475093 -125124837 + MER47B DNA MER2_type 3 418 0 486 254 124 64 chrX 37475093 37475265 -125124665 - L1MC5 LINE L1 -564 7397 7237 351 0 0 0 chrX 37476052 37476091 -125123839 + (CA)n Simple_repeat Simple_repeat 1 39 0 2043 165 32 54 chrX 37476731 37477173 -125122757 + MSTB1 LTR MaLR 1 432 0 644 74 11 0 chrX 37477589 37477684 -125122246 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1968 121 50 0 chrX 37477740 37478021 -125121909 + AluSq SINE Alu 1 295 -18 794 215 83 68 chrX 37478210 37478657 -125121273 - L1MC5 LINE L1 -34 7927 7471 2049 123 10 0 chrX 37478657 37478959 -125120971 - AluSx SINE Alu -7 305 1 794 215 83 68 chrX 37478959 37478980 -125120950 - L1MC5 LINE L1 -490 7471 7452 22 56 0 0 chrX 37479105 37479141 -125120789 + AT_rich Low_complexity Low_complexity 1 36 0 416 192 0 0 chrX 37479200 37479273 -125120657 + MER116 DNA Mariner 3 75 -5 792 254 0 0 chrX 37479312 37479497 -125120433 + L1MC5 LINE L1 6643 6827 -1134 26 0 0 0 chrX 37480150 37480176 -125119754 + AT_rich Low_complexity Low_complexity 1 26 0 301 217 80 94 chrX 37480635 37480773 -125119157 - HAL1 LINE L1 -1229 1278 1143 1803 181 47 49 chrX 37480885 37481191 -125118739 + MER31B LTR ERV1 38 344 -122 2066 152 6 3 chrX 37481191 37481546 -125118384 - MER46B DNA MER2_type -1 235 5 1803 181 47 49 chrX 37481546 37481669 -125118261 + MER31B LTR ERV1 344 466 0 199 204 23 0 chrX 37483072 37483116 -125116814 - MIR SINE MIR -121 141 97 5938 155 21 35 chrX 37483274 37485411 -125114519 + L1MA8 LINE L1 5068 6678 -7 313 113 0 0 chrX 37485513 37485566 -125114364 + L1MA8 LINE L1 6236 6288 -3 15485 171 44 9 chrX 37485575 37489976 -125109954 + L1PBa LINE L1 1 4555 -2307 2621 59 0 12 chrX 37490076 37490414 -125109516 + L1PA8A LINE L1 5798 6131 0 2275 109 42 25 chrX 37492921 37493279 -125106651 - THE1B LTR MaLR 0 364 1 796 211 67 39 chrX 37493853 37494061 -125105869 + MIR SINE MIR 49 262 0 180 0 0 0 chrX 37494418 37494438 -125105492 + (TG)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chrX 37495690 37495710 -125104220 + (CAA)n Simple_repeat Simple_repeat 2 21 0 468 329 20 0 chrX 37495991 37496143 -125103787 + MLT1F LTR MaLR 388 542 0 388 298 116 6 chrX 37496143 37496324 -125103606 + MLT1F1-int LTR MaLR 1 201 -1170 1011 167 17 103 chrX 37496364 37496532 -125103398 - AluJo SINE Alu -15 297 153 221 0 0 33 chrX 37496532 37496562 -125103368 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1011 167 17 103 chrX 37496562 37496626 -125103304 - AluJo SINE Alu -159 153 85 787 258 40 20 chrX 37496626 37496878 -125103052 + MLT1F1-int LTR MaLR 345 601 -770 983 309 78 67 chrX 37497123 37497779 -125102151 + MLT1F1-int LTR MaLR 704 1366 -5 1791 253 58 17 chrX 37497784 37498318 -125101612 + MLT1F1 LTR MaLR 1 559 -8 1759 213 229 26 chrX 37498327 37498904 -125101026 + MER39 LTR ERV1 12 705 -2 25 0 0 0 chrX 37498922 37498947 -125100983 + AT_rich Low_complexity Low_complexity 1 25 0 663 306 102 44 chrX 37498957 37499665 -125100265 + L1M4 LINE L1 2211 2877 -3269 2818 73 92 5 chrX 37499665 37500077 -125099853 + LTR7 LTR ERV1 1 448 -2 663 306 102 44 chrX 37500077 37500949 -125098981 + L1M4 LINE L1 2877 3933 -2213 25 51 0 0 chrX 37501023 37501062 -125098868 + AT_rich Low_complexity Low_complexity 1 39 0 687 276 110 33 chrX 37502126 37502463 -125097467 + MER34C LTR ERV1 1 363 -222 383 280 116 94 chrX 37502752 37503124 -125096806 + MLT1H LTR MaLR 168 547 -2 2077 147 0 0 chrX 37503144 37503456 -125096474 + AluJo SINE Alu 1 312 0 463 286 14 29 chrX 37503817 37503957 -125095973 - L2 LINE L2 -272 3041 2904 2394 90 0 0 chrX 37504749 37505049 -125094881 + AluSc SINE Alu 1 300 -9 24 0 0 0 chrX 37505078 37505102 -125094828 + AT_rich Low_complexity Low_complexity 1 24 0 2281 75 0 26 chrX 37505488 37505796 -125094134 + AluY SINE Alu 12 311 0 25 51 0 0 chrX 37505943 37505982 -125093948 + AT_rich Low_complexity Low_complexity 1 39 0 1682 162 10 27 chrX 37507807 37508104 -125091826 - AluJo SINE Alu -20 292 1 457 230 191 51 chrX 37508207 37508464 -125091466 - L1MC4 LINE L1 -272 7770 7478 2147 136 0 7 chrX 37508538 37508847 -125091083 - AluSq SINE Alu -6 307 1 3241 205 18 29 chrX 37508870 37509642 -125090288 + MER97a DNA MER1_type? 118 881 -13 1919 162 46 14 chrX 37509688 37510039 -125089891 - LOR1b LTR ERV1 0 461 100 1370 268 55 81 chrX 37510104 37510923 -125089007 - L2 LINE L2 0 3313 2516 1450 251 79 24 chrX 37511246 37511752 -125088178 - L1ME3A LINE L1 -3 6167 5634 1826 117 37 0 chrX 37511880 37512153 -125087777 - MER49 LTR ERV1 -640 283 1 754 112 48 8 chrX 37512153 37512278 -125087652 + MER34C LTR ERV1 456 585 0 357 369 60 4 chrX 37512332 37512600 -125087330 - L1ME3A LINE L1 -224 6015 5733 353 248 87 31 chrX 37512610 37512771 -125087159 + LTR68 LTR ERV1 8 177 -563 539 296 65 30 chrX 37513194 37513858 -125086072 - L1ME3A LINE L1 -517 5716 5033 315 0 0 0 chrX 37514119 37514154 -125085776 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 324 0 0 0 chrX 37514153 37514189 -125085741 + (GA)n Simple_repeat Simple_repeat 1 36 0 470 288 106 49 chrX 37514505 37515054 -125084876 - L1ME3A LINE L1 -1216 4999 4420 826 350 68 14 chrX 37515054 37515494 -125084436 + LTR16B LTR ERVL 1 464 0 2411 329 26 13 chrX 37515928 37516113 -125083817 + HERV16 LTR ERVL 469 650 -4346 937 55 86 0 chrX 37516113 37516241 -125083689 + MER85 DNA T2_type 1 139 0 2411 329 26 13 chrX 37516241 37516970 -125082960 + HERV16 LTR ERVL 650 1395 -3601 408 313 72 19 chrX 37517552 37517844 -125082086 - L1ME3A LINE L1 -1038 1538 1237 2730 186 141 19 chrX 37518182 37518879 -125081051 + LTR48 LTR ERV1 1 782 -5 3324 156 10 21 chrX 37519030 37519622 -125080308 + MER34C LTR ERV1 1 585 0 412 240 39 78 chrX 37519847 37519932 -125079998 - L1ME3A LINE L1 -177 5993 5906 2809 174 131 13 chrX 37519932 37520564 -125079366 - MER39 LTR ERV1 0 707 1 412 240 39 78 chrX 37520564 37520581 -125079349 - L1ME3A LINE L1 -264 5906 5890 1163 210 114 50 chrX 37520581 37520924 -125079006 - MLT1A1 LTR MaLR 0 365 1 412 240 39 78 chrX 37520924 37521024 -125078906 - L1ME3A LINE L1 -280 5890 5798 1478 187 28 3 chrX 37521024 37521307 -125078623 + MLT1A1 LTR MaLR 1 290 -75 419 284 24 0 chrX 37521307 37521434 -125078496 - L1ME3A LINE L1 -544 5626 5497 * 754 281 15 0 chrX 37521430 37521633 -125078297 - L1ME LINE L1 -534 5636 5431 3209 216 33 31 chrX 37521641 37522164 -125077766 - L1ME1 LINE L1 -50 6185 5665 1771 110 103 15 chrX 37522164 37522437 -125077493 + AluSg SINE Alu 1 297 -13 3209 216 33 31 chrX 37522437 37522915 -125077015 - L1ME1 LINE L1 -570 5665 5186 3139 44 65 30 chrX 37522915 37523344 -125076586 - MLT2A1 LTR ERVL 0 444 1 3209 216 33 31 chrX 37523344 37523476 -125076454 - L1ME1 LINE L1 -1049 5186 5056 2571 231 30 52 chrX 37523483 37524288 -125075642 - L1ME1 LINE L1 -5576 820 34 229 239 53 18 chrX 37524282 37524395 -125075535 - L1ME LINE L1 -2378 5430 5314 * 434 276 108 84 chrX 37525474 37525688 -125074242 - MLT1H LTR MaLR -16 533 315 656 215 67 77 chrX 37525700 37525909 -125074021 - LTR48B LTR ERV1 0 644 438 2311 124 41 41 chrX 37525916 37526205 -125073725 + LTR23 LTR ERV1 1 292 -145 1853 134 4 0 chrX 37526205 37526474 -125073456 + AluSq SINE Alu 44 313 0 2311 124 41 41 chrX 37526474 37526621 -125073309 + LTR23 LTR ERV1 291 437 0 3340 128 23 15 chrX 37527339 37527861 -125072069 + MER61E LTR ERV1 1 526 -43 6064 229 81 72 chrX 37527894 37530637 -125069293 + HUERS-P3b LTR ERV1 37 870 -4347 4081 175 1 13 chrX 37530647 37531337 -125068593 - LTR8 LTR ERV1 -9 682 1 7620 150 29 36 chrX 37531337 37534359 -125065571 + HUERS-P3b LTR ERV1 868 5175 -450 907 206 38 5 chrX 37534362 37534546 -125065384 + HUERS-P3 LTR ERV1 8730 8919 0 2387 106 52 3 chrX 37534546 37534895 -125065035 + MER61E LTR ERV1 1 366 -203 2000 124 3 24 chrX 37534897 37535188 -125064742 + AluSx SINE Alu 1 285 -27 518 194 106 17 chrX 37535313 37535493 -125064437 + LTR23-int LTR ERV1 1726 1921 -3202 1019 197 98 26 chrX 37535533 37535767 -125064163 - MSTA LTR MaLR -177 251 1 8698 164 67 28 chrX 37535767 37536023 -125063907 + LTR23-int LTR ERV1 2157 2402 -3929 2661 94 8 3 chrX 37536023 37536384 -125063546 + THE1B LTR MaLR 1 363 -1 8698 164 67 28 chrX 37536384 37536782 -125063148 + LTR23-int LTR ERV1 2402 2783 -3548 2213 93 37 0 chrX 37536782 37537082 -125062848 - AluSq SINE Alu 0 313 3 8698 164 67 28 chrX 37537082 37538652 -125061278 + LTR23-int LTR ERV1 2783 5669 -662 629 195 0 8 chrX 37538665 37538788 -125061142 + LTR23-int LTR ERV1 4784 4905 -218 2233 148 38 23 chrX 37538902 37539329 -125060601 + LTR23 LTR ERV1 4 436 -1 634 214 60 38 chrX 37539330 37539661 -125060269 - LTR48B LTR ERV1 -214 573 1 375 290 14 14 chrX 37539791 37539929 -125060001 - MLT1H LTR MaLR -389 160 23 3237 148 22 55 chrX 37539933 37540555 -125059375 - LTR29 LTR ERV1 -20 602 1 2870 170 33 95 chrX 37540741 37541478 -125058452 + LTR8 LTR ERV1 1 691 0 2173 124 0 3 chrX 37541723 37542029 -125057901 + AluSg SINE Alu 1 305 -5 21 36 0 0 chrX 37542046 37542074 -125057856 + AT_rich Low_complexity Low_complexity 1 28 0 257 284 0 87 chrX 37542990 37543117 -125056813 - HAL1b LINE L1 -869 479 364 845 295 136 30 chrX 37543268 37543732 -125056198 - LTR33 LTR ERVL 0 521 9 1911 190 31 39 chrX 37544593 37544912 -125055018 + MLT2D LTR ERVL 2 322 -92 1832 170 28 25 chrX 37544912 37545276 -125054654 + MLT1A1 LTR MaLR 1 365 0 1911 190 31 39 chrX 37545276 37545333 -125054597 + MLT2D LTR ERVL 322 377 -37 279 79 0 0 chrX 37545333 37545371 -125054559 + (CA)n Simple_repeat Simple_repeat 2 39 0 1911 190 31 39 chrX 37545371 37545409 -125054521 + MLT2D LTR ERVL 377 414 0 431 263 36 7 chrX 37545936 37546073 -125053857 - LTR16C LTR ERVL 0 491 351 1623 207 66 35 chrX 37546076 37546563 -125053367 - MLT1D LTR MaLR 0 505 4 420 193 45 0 chrX 37546628 37546716 -125053214 - MLT2F LTR ERVL -571 92 1 823 193 84 92 chrX 37546716 37547109 -125052821 - ERVL-F LTR ERVL -8 5756 5367 1859 197 22 17 chrX 37547121 37547481 -125052449 + LTR49-int LTR ERV1 484 845 -5486 2179 116 10 54 chrX 37547514 37547782 -125052148 + LTR49-int LTR ERV1 842 1089 -5242 2456 85 3 0 chrX 37547782 37548089 -125051841 + AluSx SINE Alu 1 308 -4 2179 116 10 54 chrX 37548089 37548209 -125051721 + LTR49-int LTR ERV1 1089 1213 -5118 384 261 0 0 chrX 37548209 37548278 -125051652 + tRNA-Glu-GAG tRNA tRNA 7 75 0 484 137 0 11 chrX 37548331 37548426 -125051504 + LTR48B-int LTR ERV1 1290 1383 -4948 969 118 13 7 chrX 37548539 37548691 -125051239 + LTR48B-int LTR ERV1 1377 1529 -4802 511 112 22 0 chrX 37548691 37548780 -125051150 + G-rich Low_complexity Low_complexity 4 94 0 659 20 40 20 chrX 37548784 37548885 -125051045 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 9223 131 21 35 chrX 37548887 37550474 -125049456 + LTR48B-int LTR ERV1 1528 3091 -3240 476 115 11 0 chrX 37550465 37550552 -125049378 + LTR48B-int LTR ERV1 4296 4383 -1948 * 7518 164 20 13 chrX 37550561 37552160 -125047770 + LTR48B-int LTR ERV1 4510 6164 -167 1098 217 9 5 chrX 37552257 37552469 -125047461 + LTR48B LTR ERV1 1 213 -431 226 146 73 0 chrX 37553888 37553929 -125046001 + MLT1J LTR MaLR 109 152 -359 1123 211 136 19 chrX 37553933 37554293 -125045637 - LTR48B LTR ERV1 0 644 243 1371 250 91 62 chrX 37554990 37555825 -125044105 + L2 LINE L2 2464 3307 -6 2012 256 136 6 chrX 37556411 37556949 -125042981 + MLT2F LTR ERVL 1 608 -55 1002 128 47 90 chrX 37557011 37557222 -125042708 + MER20 DNA MER1_type 1 202 -17 5985 266 60 33 chrX 37557305 37557494 -125042436 + ERVL-F LTR ERVL 2 184 -5580 715 195 158 62 chrX 37557494 37557894 -125042036 + LTR21B LTR ERV1 1 438 0 5985 266 60 33 chrX 37557894 37558669 -125041261 + ERVL-F LTR ERVL 184 936 -4828 1485 162 71 81 chrX 37558669 37559063 -125040867 - MLT1B LTR MaLR 0 390 1 5985 266 60 33 chrX 37559063 37559500 -125040430 + ERVL-F LTR ERVL 936 1360 -4404 2429 182 24 4 chrX 37559500 37559956 -125039974 + MLT1C LTR MaLR 3 467 0 5985 266 60 33 chrX 37559956 37560771 -125039159 + ERVL-F LTR ERVL 1360 2351 -3413 348 225 0 0 chrX 37560777 37560848 -125039082 + MLT1E LTR MaLR 75 145 -448 1571 217 108 35 chrX 37560862 37561268 -125038662 + MLT1E LTR MaLR 114 549 -44 722 303 64 47 chrX 37561771 37562072 -125037858 + L1MEd LINE L1 844 1138 -5258 2370 42 3 17 chrX 37562072 37562384 -125037546 + AluY SINE Alu 1 308 0 722 303 64 47 chrX 37562384 37562811 -125037119 + L1MEd LINE L1 1138 1645 -4751 1403 167 9 123 chrX 37562811 37563152 -125036778 + AluJo SINE Alu 1 302 0 722 303 64 47 chrX 37563152 37563273 -125036657 + L1MEd LINE L1 1645 1762 -4634 22 0 0 0 chrX 37563328 37563350 -125036580 + AT_rich Low_complexity Low_complexity 1 22 0 541 335 34 44 chrX 37563461 37563757 -125036173 - MLT1I LTR MaLR -19 390 98 1075 259 79 10 chrX 37564061 37564559 -125035371 + L1MEd LINE L1 2113 2599 -3616 216 0 0 0 chrX 37564663 37564687 -125035243 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1781 177 3 0 chrX 37564697 37564985 -125034945 - AluJb SINE Alu -23 289 1 26 50 0 0 chrX 37565642 37565682 -125034248 + AT_rich Low_complexity Low_complexity 1 40 0 260 246 8 51 chrX 37565958 37566076 -125033854 + HAL1b LINE L1 318 430 -918 21 0 0 0 chrX 37566390 37566411 -125033519 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chrX 37568403 37568447 -125031483 + AT_rich Low_complexity Low_complexity 1 44 0 260 70 23 0 chrX 37568598 37568641 -125031289 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1910 112 106 124 chrX 37569647 37570083 -125029847 + MSTA LTR MaLR 1 428 0 881 281 63 1 chrX 37570097 37570472 -125029458 + MLT1H LTR MaLR 129 547 -2 345 62 0 0 chrX 37572043 37572091 -125027839 + (TG)n Simple_repeat Simple_repeat 2 49 0 860 344 65 34 chrX 37572478 37573244 -125026686 - L2 LINE L2 -4 3309 2521 23829 143 16 15 chrX 37573268 37578085 -125021845 - L1MA3 LINE L1 -6 7718 2878 186 43 0 0 chrX 37578085 37578108 -125021822 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23829 143 16 15 chrX 37578108 37580979 -125018951 - L1MA3 LINE L1 -4846 2878 13 372 305 93 61 chrX 37580981 37581227 -125018703 - L2 LINE L2 -814 2500 2247 1003 274 121 40 chrX 37581526 37581982 -125017948 + L2 LINE L2 125 617 -2697 276 288 90 0 chrX 37581995 37582106 -125017824 + L2 LINE L2 837 957 -2357 199 345 14 42 chrX 37582109 37582251 -125017679 + L2 LINE L2 1239 1376 -1938 1090 280 61 53 chrX 37582436 37583082 -125016848 + L2 LINE L2 2661 3313 0 274 388 33 0 chrX 37583137 37583289 -125016641 - L2 LINE L2 -926 2388 2232 2231 186 60 25 chrX 37583299 37583783 -125016147 - MLT1D LTR MaLR -2 503 3 209 321 45 70 chrX 37583827 37584070 -125015860 - L2 LINE L2 -1232 2082 1846 480 200 0 0 chrX 37584811 37584896 -125015034 + MIR SINE MIR 71 155 -107 590 246 128 11 chrX 37584960 37585139 -125014791 - MIR SINE MIR 0 262 63 1411 143 0 74 chrX 37585348 37585543 -125014387 + MSTB LTR MaLR 1 176 -250 2421 81 0 3 chrX 37585543 37585850 -125014080 + AluY SINE Alu 1 306 -5 1411 143 0 74 chrX 37585850 37585898 -125014032 + MSTB LTR MaLR 176 226 -200 1268 155 15 19 chrX 37585899 37586105 -125013825 - AluJo SINE Alu -13 299 95 248 310 14 0 chrX 37586134 37586205 -125013725 + LTR33 LTR ERVL 150 221 -300 591 259 44 34 chrX 37586237 37586442 -125013488 + LTR33 LTR ERVL 307 513 -8 234 307 130 61 chrX 37587139 37587370 -125012560 + MIR SINE MIR 16 262 0 2714 7 3 10 chrX 37588293 37588598 -125011332 - AluYa5 SINE Alu -8 303 1 782 255 50 13 chrX 37588705 37588969 -125010961 + LTR16A1 LTR ERVL 195 451 -6 217 402 21 0 chrX 37589032 37589129 -125010801 - L2 LINE L2 -223 3049 2951 272 291 96 10 chrX 37589155 37589270 -125010660 + MIR SINE MIR 8 130 -78 4893 129 18 0 chrX 37589283 37590067 -125009863 - L1MA4 LINE L1 -12 7707 6910 491 72 63 0 chrX 37590069 37590180 -125009750 + (TA)n Simple_repeat Simple_repeat 2 119 0 1809 148 3 44 chrX 37590181 37590673 -125009257 - L1MA4 LINE L1 -743 6822 6427 7518 30 5 0 chrX 37590673 37591867 -125008063 - L1PA5 LINE L1 -5 6149 4955 8655 49 2 0 chrX 37591867 37592937 -125006993 + L1PA5 LINE L1 3884 4955 -1191 * 12557 189 35 24 chrX 37592936 37594169 -125005761 - L1MA4 LINE L1 -1129 6436 5217 1886 141 61 3 chrX 37594169 37594495 -125005435 - L1PB3 LINE L1 -7 6147 5803 12557 189 35 24 chrX 37594495 37594578 -125005352 - L1MA4 LINE L1 -2348 5217 5136 186 71 0 0 chrX 37594578 37594606 -125005324 + (TTG)n Simple_repeat Simple_repeat 3 30 0 12557 189 35 24 chrX 37594606 37596440 -125003490 - L1MA4 LINE L1 -2429 5136 3251 1834 103 11 15 chrX 37596484 37596757 -125003173 + L1PA11 LINE L1 5903 6174 0 361 219 79 72 chrX 37597052 37597317 -125002613 - HAL1 LINE L1 -1393 1114 848 371 270 48 40 chrX 37598308 37598434 -125001496 - MER5A DNA MER1_type 0 189 63 781 206 26 5 chrX 37598440 37598634 -125001296 - L1MC2 LINE L1 -11 6333 6136 2033 148 88 3 chrX 37598634 37598992 -125000938 - L1MC3 LINE L1 -193 7592 7204 295 225 45 22 chrX 37598992 37599081 -125000849 - MLT1F1 LTR MaLR -434 133 43 279 170 38 0 chrX 37599201 37599254 -125000676 + MER5B DNA MER1_type 123 177 -1 206 231 0 0 chrX 37601196 37601235 -124998695 + (CA)n Simple_repeat Simple_repeat 1 39 0 327 331 115 0 chrX 37602228 37602367 -124997563 - LTR67 LTR ERVL -367 190 36 2065 129 13 10 chrX 37602420 37602729 -124997201 + AluSx SINE Alu 1 310 -2 268 281 67 52 chrX 37603291 37603426 -124996504 - L2 LINE L2 -4 3268 3132 508 176 69 0 chrX 37603596 37603698 -124996232 + L1MC4 LINE L1 7925 8033 -9 25 0 0 0 chrX 37604164 37604189 -124995741 + AT_rich Low_complexity Low_complexity 1 25 0 189 74 0 0 chrX 37604964 37604991 -124994939 + (T)n Simple_repeat Simple_repeat 1 27 0 962 146 61 0 chrX 37605234 37605399 -124994531 + MER20 DNA MER1_type 45 219 0 1699 161 20 10 chrX 37605495 37605787 -124994143 - AluJb SINE Alu -17 295 1 1143 177 149 46 chrX 37606227 37606555 -124993375 + MLT1A1 LTR MaLR 4 365 0 22 0 0 0 chrX 37607050 37607072 -124992858 + AT_rich Low_complexity Low_complexity 1 22 0 42810 30 23 1 chrX 37607078 37613079 -124986851 - L1PA2 LINE L1 -2 6153 22 1599 303 82 42 chrX 37614651 37615544 -124984386 + L2 LINE L2 2147 3080 -233 451 301 114 88 chrX 37615857 37616121 -124983809 - MLT1J LTR MaLR 0 511 228 5439 136 21 9 chrX 37616121 37617350 -124982580 + L1PA16 LINE L1 4932 6166 0 451 301 114 88 chrX 37617350 37617560 -124982370 - MLT1J LTR MaLR -283 228 25 418 347 33 50 chrX 37617650 37617892 -124982038 + L2 LINE L2 2853 3090 -182 450 247 73 0 chrX 37618029 37618153 -124981777 - MIR SINE MIR -61 147 63 210 71 0 0 chrX 37618204 37618232 -124981698 + (T)n Simple_repeat Simple_repeat 1 28 0 1016 196 5 11 chrX 37618261 37618450 -124981480 + MER58A DNA MER1_type 37 224 0 299 268 72 31 chrX 37618681 37618778 -124981152 + MIR SINE MIR 151 251 -11 970 266 18 4 chrX 37621097 37621326 -124978604 + MIR SINE MIR 2 233 -29 1768 181 42 13 chrX 37621627 37622008 -124977922 - L1ME1 LINE L1 -5 6161 5770 217 103 0 0 chrX 37622550 37622579 -124977351 - L3 LINE CR1 -1281 296 268 1851 174 0 3 chrX 37623774 37624068 -124975862 - AluJb SINE Alu -19 293 1 2512 273 40 9 chrX 37624294 37625501 -124974429 + L1ME1 LINE L1 41 1333 -5063 2042 197 37 17 chrX 37625539 37626076 -124973854 + L1ME1 LINE L1 1919 2466 -3930 1677 238 4 84 chrX 37626058 37626182 -124973748 + L1ME1 LINE L1 5712 5844 -391 * 19301 34 1 11 chrX 37626182 37629308 -124970622 + L1PA4 LINE L1 3024 6152 -3 1677 238 4 84 chrX 37629308 37629745 -124970185 + L1ME1 LINE L1 5844 6228 -7 438 20 0 0 chrX 37629905 37629956 -124969974 + (CA)n Simple_repeat Simple_repeat 2 52 0 385 270 17 9 chrX 37632175 37632290 -124967640 + MIR SINE MIR 39 154 -108 840 227 25 0 chrX 37632475 37632638 -124967292 + MER5A DNA MER1_type 14 180 -9 1047 336 32 14 chrX 37634619 37635059 -124964871 - HERV16 LTR ERVL -4502 494 47 748 327 33 20 chrX 37635087 37635513 -124964417 - LTR16A LTR ERVL 0 450 1 290 227 67 8 chrX 37635542 37635709 -124964221 + L1M3 LINE L1 5313 5456 -712 2194 127 0 0 chrX 37635718 37636018 -124963912 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 37636024 37636047 -124963883 + AT_rich Low_complexity Low_complexity 1 23 0 1008 254 41 43 chrX 37636173 37636638 -124963292 + L1ME LINE L1 4563 5026 -1120 839 173 101 12 chrX 37636654 37636822 -124963108 + MER3 DNA MER1_type 2 184 -25 338 297 8 23 chrX 37636894 37637022 -124962908 + MLT2F LTR ERVL 16 141 -522 548 140 0 5 chrX 37637031 37637145 -124962785 + MLT1E3 LTR MaLR 51 209 -445 281 254 0 0 chrX 37637153 37637208 -124962722 + Tigger5 DNA MER2_type 1 55 -2268 423 193 45 0 chrX 37637213 37637301 -124962629 + Tigger5 DNA MER2_type 2231 2322 -1 818 233 109 77 chrX 37637612 37638069 -124961861 + L1ME LINE L1 5102 5574 -596 453 19 0 0 chrX 37638080 37638134 -124961796 + (TG)n Simple_repeat Simple_repeat 2 55 0 839 237 14 40 chrX 37638134 37638412 -124961518 - L1M4 LINE L1 -1007 5139 4869 2971 103 9 14 chrX 37639976 37640412 -124959518 - MER57B LTR ERV1 0 434 1 182 299 47 47 chrX 37640587 37640694 -124959236 - MIR SINE MIR -10 252 146 286 277 10 0 chrX 37640892 37640993 -124958937 + L1 LINE L1 3876 3977 -2169 553 256 41 32 chrX 37641108 37641322 -124958608 - MIR SINE MIR -12 250 39 305 309 36 12 chrX 37641345 37641513 -124958417 + L1 LINE L1 4024 4195 -1951 1975 216 45 11 chrX 37641665 37642132 -124957798 - MER90 LTR ERV1 0 575 93 1719 227 139 13 chrX 37642138 37642614 -124957316 - MER34 LTR ERV1 -6 536 1 333 88 275 75 chrX 37642614 37642694 -124957236 - MER90 LTR ERV1 -479 96 1 442 317 31 0 chrX 37642762 37642923 -124957007 + L1ME3A LINE L1 5989 6154 -16 44 20 0 0 chrX 37642925 37642976 -124956954 + AT_rich Low_complexity Low_complexity 1 51 0 588 305 58 74 chrX 37643063 37643214 -124956716 - L2 LINE L2 -1145 2169 2017 2298 214 20 18 chrX 37643214 37643718 -124956212 + MLT1D LTR MaLR 1 505 0 588 305 58 74 chrX 37643718 37643741 -124956189 - L2 LINE L2 -1297 2017 1995 2086 129 7 0 chrX 37643741 37644044 -124955886 - AluSx SINE Alu -2 310 6 588 305 58 74 chrX 37644044 37644232 -124955698 - L2 LINE L2 -1319 1995 1812 195 379 15 0 chrX 37646133 37646199 -124953731 - L2 LINE L2 -5 3308 3242 249 313 84 67 chrX 37646239 37646418 -124953512 + L2 LINE L2 3083 3264 -8 22 0 0 0 chrX 37646445 37646467 -124953463 + AT_rich Low_complexity Low_complexity 1 22 0 2080 109 10 23 chrX 37649304 37649607 -124950323 - AluSg SINE Alu -11 299 1 1306 266 80 39 chrX 37649620 37650108 -124949822 - LTR33 LTR ERVL -13 508 1 331 263 44 9 chrX 37650310 37650424 -124949506 - L1M4 LINE L1 -3792 2852 2735 282 89 44 0 chrX 37651036 37651081 -124948849 + L1P2 LINE L1 5395 5441 -713 386 189 0 0 chrX 37651472 37651546 -124948384 - L1M4 LINE L1 -4590 2056 1983 4239 184 16 8 chrX 37651549 37652372 -124947558 - L1MB8 LINE L1 0 6178 5350 * 6714 217 32 27 chrX 37652369 37652865 -124947065 - L1M4 LINE L1 -4645 2001 1509 1918 181 0 0 chrX 37652865 37653175 -124946755 - AluJb SINE Alu -2 310 1 6714 217 32 27 chrX 37653175 37653805 -124946125 - L1M4 LINE L1 -5137 1509 883 2256 110 3 0 chrX 37653805 37654104 -124945826 + AluSx SINE Alu 1 300 -12 6714 217 32 27 chrX 37654104 37654947 -124944983 - L1M4 LINE L1 -5763 883 10 1111 278 33 36 chrX 37655253 37655491 -124944439 - LTR16C LTR ERVL 0 491 253 1995 121 68 6 chrX 37655491 37655814 -124944116 + MER61A LTR ERV1 1 343 0 1111 278 33 36 chrX 37655814 37655909 -124944021 - LTR16C LTR ERVL -238 253 159 382 297 104 15 chrX 37656051 37656320 -124943610 - HAL1b LINE L1 -570 778 486 1625 194 88 51 chrX 37656394 37656828 -124943102 + MLT1C LTR MaLR 18 467 0 1226 267 5 38 chrX 37657576 37657943 -124941987 + L1MB7 LINE L1 24 378 -6164 8439 231 39 31 chrX 37657952 37660544 -124939386 + L1MB7 LINE L1 3112 5724 -920 5807 111 9 3 chrX 37660545 37661419 -124938511 - Tigger3b DNA MER2_type -7 1224 346 2567 134 47 5 chrX 37661419 37661841 -124938089 + MSTB1 LTR MaLR 1 432 0 1991 160 8 47 chrX 37661842 37662205 -124937725 - Tigger3b DNA MER2_type -882 349 1 3789 184 30 45 chrX 37662227 37663163 -124936767 + L1MB7 LINE L1 5752 6673 -9 212 216 20 0 chrX 37663634 37663685 -124936245 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2433 89 0 0 chrX 37664352 37664665 -124935265 - AluSq SINE Alu 0 313 1 29 28 0 0 chrX 37665183 37665219 -124934711 + AT_rich Low_complexity Low_complexity 1 36 0 2154 114 3 0 chrX 37666677 37666966 -124932964 - AluSx SINE Alu -22 290 1 583 262 138 39 chrX 37666980 37667320 -124932610 + MLT1H LTR MaLR 118 521 -34 4927 41 3 3 chrX 37667320 37667911 -124932019 - LTR10C LTR ERV1 0 591 1 583 262 138 39 chrX 37667911 37667950 -124931980 + MLT1H LTR MaLR 521 555 0 2033 132 0 26 chrX 37668495 37668805 -124931125 - AluSx SINE Alu -10 302 1 541 247 60 27 chrX 37668886 37669036 -124930894 + MIR SINE MIR 26 180 -82 480 262 163 0 chrX 37669117 37669258 -124930672 + MIR3 SINE MIR 42 205 -3 430 109 16 0 chrX 37669962 37670026 -124929904 + MER31B LTR ERV1 3 67 -399 213 94 0 0 chrX 37670052 37670084 -124929846 + (A)n Simple_repeat Simple_repeat 1 32 0 255 170 0 0 chrX 37670087 37670134 -124929796 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1741 158 20 20 chrX 37671078 37671382 -124928548 - AluJo SINE Alu -8 304 1 327 93 0 0 chrX 37671402 37671445 -124928485 - MLT2B1 LTR ERVL 0 553 511 1543 207 43 62 chrX 37671523 37671999 -124927931 - MLT2B1 LTR ERVL -43 472 8 363 316 78 17 chrX 37672027 37672375 -124927555 + HAL1 LINE L1 820 1188 -1319 1702 171 14 10 chrX 37672502 37672795 -124927135 + AluJo SINE Alu 9 302 -10 252 271 39 98 chrX 37673072 37673309 -124926621 - L1ME LINE L1 -239 5882 5657 196 342 0 0 chrX 37674018 37674094 -124925836 - MIR SINE MIR -125 137 62 1507 220 85 11 chrX 37674136 37674499 -124925431 + MLT1B LTR MaLR 1 390 0 205 381 34 8 chrX 37674504 37674622 -124925308 + MIR3 SINE MIR 46 166 -42 25 0 0 0 chrX 37674739 37674764 -124925166 + AT_rich Low_complexity Low_complexity 1 25 0 2014 203 59 25 chrX 37674937 37675410 -124924520 + MLT1D LTR MaLR 1 489 -16 219 381 39 7 chrX 37675793 37675948 -124923982 - L2 LINE L2 -383 2931 2772 1074 241 80 62 chrX 37676235 37676720 -124923210 + PABL_B LTR ERV1 174 667 0 729 249 68 110 chrX 37676726 37677227 -124922703 - L2 LINE L2 -564 2750 2271 217 159 23 0 chrX 37677397 37677441 -124922489 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 322 294 85 55 chrX 37678247 37678466 -124921464 - MIR SINE MIR 0 262 21 396 0 0 0 chrX 37678955 37678999 -124920931 + (TG)n Simple_repeat Simple_repeat 1 44 0 4072 117 19 51 chrX 37678999 37679682 -124920248 + LTR8 LTR ERV1 31 691 0 1540 162 23 118 chrX 37679776 37680257 -124919673 - LTR49 LTR ERV1 -160 435 1 2191 112 0 3 chrX 37680309 37680612 -124919318 + AluSx SINE Alu 1 302 -10 438 252 37 44 chrX 37680941 37681076 -124918854 - L2 LINE L2 0 3313 3180 4321 155 100 53 chrX 37682175 37683083 -124916847 + LTR28 LTR ERV1 1 951 -69 379 274 73 31 chrX 37683255 37683514 -124916416 - L1M4 LINE L1 -1487 4659 4390 25 31 0 0 chrX 37683719 37683751 -124916179 + AT_rich Low_complexity Low_complexity 1 32 0 357 246 85 23 chrX 37683919 37684049 -124915881 + L1ME2 LINE L1 5304 5441 -2367 25 75 0 0 chrX 37684049 37684102 -124915828 + AT_rich Low_complexity Low_complexity 1 53 0 1336 158 187 45 chrX 37684105 37684479 -124915451 + LTR49 LTR ERV1 9 435 -160 36082 89 11 29 chrX 37684493 37690704 -124909226 + L1PA6 LINE L1 11 6150 -4 2355 90 0 0 chrX 37690729 37691028 -124908902 - AluY SINE Alu -12 299 1 666 175 50 19 chrX 37691028 37691188 -124908742 + LTR48 LTR ERV1 623 787 0 5074 186 94 128 chrX 37691190 37692325 -124907605 + LTR48-int LTR ERV1 1 1173 -3763 354 219 14 14 chrX 37692325 37692398 -124907532 + tRNA-Glu-GAG tRNA tRNA 3 75 0 5074 186 94 128 chrX 37692398 37692982 -124906948 + LTR48-int LTR ERV1 1173 357 -4579 2004 157 0 0 chrX 37692982 37693294 -124906636 - AluSx SINE Alu 0 312 1 5074 186 94 128 chrX 37693294 37693538 -124906392 + LTR48-int LTR ERV1 356 607 -4329 6667 163 20 6 chrX 37693679 37695931 -124903999 + L1PB1 LINE L1 3868 6151 0 1179 170 37 0 chrX 37695954 37696195 -124903735 + L1ME2 LINE L1 5691 5940 -224 396 236 193 19 chrX 37696291 37696427 -124903503 + L1ME2 LINE L1 5937 6106 -58 2258 105 3 0 chrX 37696427 37696723 -124903207 + AluSp SINE Alu 1 297 -16 396 236 193 19 chrX 37696723 37696747 -124903183 + L1ME2 LINE L1 6106 6125 -39 336 24 0 0 chrX 37696747 37696788 -124903142 + (TG)n Simple_repeat Simple_repeat 1 41 0 2867 94 29 0 chrX 37696810 37697223 -124902707 + L1PA13 LINE L1 5719 6143 -20 475 170 228 18 chrX 37697268 37697439 -124902491 - Charlie1 DNA MER1_type -112 2649 2443 22 35 0 0 chrX 37697817 37697846 -124902084 + AT_rich Low_complexity Low_complexity 1 29 0 711 248 0 7 chrX 37698656 37698809 -124901121 - FRAM SINE Alu -23 153 2 206 340 32 21 chrX 37699119 37699213 -124900717 + MIR SINE MIR 168 262 0 227 325 0 0 chrX 37699238 37699318 -124900612 - MIR SINE MIR -108 154 75 261 201 291 15 chrX 37699604 37699738 -124900192 - MIR3 SINE MIR -10 198 28 29 47 0 0 chrX 37699846 37699889 -124900041 + AT_rich Low_complexity Low_complexity 1 43 0 446 325 121 51 chrX 37699930 37700314 -124899616 - L1MD2 LINE L1 -296 5825 5527 1399 164 174 0 chrX 37700314 37700607 -124899323 + MER2 DNA MER2_type 1 344 0 446 325 121 51 chrX 37700607 37700898 -124899032 - L1MD2 LINE L1 -594 5527 5258 229 128 35 23 chrX 37701196 37701282 -124898648 + (TA)n Simple_repeat Simple_repeat 2 88 0 26 50 0 0 chrX 37701527 37701567 -124898363 + AT_rich Low_complexity Low_complexity 1 40 0 192 254 0 0 chrX 37701954 37702013 -124897917 + (TATG)n Simple_repeat Simple_repeat 2 60 0 388 327 115 10 chrX 37702139 37702530 -124897400 + L1ME LINE L1 5379 5810 -311 239 242 0 0 chrX 37702543 37702609 -124897321 + (TA)n Simple_repeat Simple_repeat 1 66 0 3940 196 56 81 chrX 37702773 37703895 -124896035 + L1MB7 LINE L1 3 1096 -5446 633 299 49 7 chrX 37703902 37704210 -124895720 + L1MB7 LINE L1 3600 3920 -2724 1373 234 113 85 chrX 37704212 37704728 -124895202 - MER39 LTR ERV1 0 707 7 6247 196 52 44 chrX 37704733 37706385 -124893545 + L1MB7 LINE L1 3918 5582 -1062 1880 189 35 27 chrX 37706385 37706787 -124893143 - MLT1B LTR MaLR 0 426 1 2245 189 48 22 chrX 37706876 37707373 -124892557 + L1MB7 LINE L1 6160 6669 -13 21 0 0 0 chrX 37707568 37707589 -124892341 + AT_rich Low_complexity Low_complexity 1 21 0 1191 208 11 30 chrX 37707708 37707973 -124891957 - MLT2B1 LTR ERVL 0 520 261 414 341 58 13 chrX 37708217 37708525 -124891405 - L1MD2 LINE L1 -1100 5046 4725 2198 108 0 3 chrX 37708606 37708901 -124891029 - AluSq SINE Alu -19 294 1 729 197 0 0 chrX 37709007 37709129 -124890801 + FLAM_A SINE Alu 1 122 -11 22 0 0 0 chrX 37709234 37709256 -124890674 + AT_rich Low_complexity Low_complexity 1 22 0 7226 39 0 4 chrX 37709427 37710413 -124889517 - L1PA5 LINE L1 -9 6145 5158 26 0 0 0 chrX 37710462 37710488 -124889442 + AT_rich Low_complexity Low_complexity 1 26 0 359 265 68 74 chrX 37710645 37711056 -124888874 + HAL1b LINE L1 1193 1326 -22 23 0 0 0 chrX 37711253 37711276 -124888654 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 37711295 37711316 -124888614 + AT_rich Low_complexity Low_complexity 1 21 0 1169 140 0 0 chrX 37761428 37761599 -124838331 + AluSg/x SINE Alu 131 301 -11 2174 104 13 7 chrX 37761603 37761901 -124838029 + AluSp SINE Alu 1 300 -13 772 246 88 126 chrX 37762171 37762293 -124837637 - MLT1J LTR MaLR 0 511 386 2474 64 7 0 chrX 37762293 37762589 -124837341 + AluY SINE Alu 1 298 -13 772 246 88 126 chrX 37762589 37762991 -124836939 - MLT1J LTR MaLR -125 386 7 351 210 57 89 chrX 37763189 37763346 -124836584 - MIR SINE MIR -41 221 70 1066 165 21 16 chrX 37764032 37764220 -124835710 + MER5A DNA MER1_type 1 189 0 412 321 6 30 chrX 37765311 37765479 -124834451 + MIR3 SINE MIR 15 178 -30 250 286 32 63 chrX 37765521 37765647 -124834283 + LTR16C LTR ERVL 188 309 -182 180 97 0 0 chrX 37765769 37765800 -124834130 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2208 102 0 0 chrX 37765802 37766085 -124833845 - AluSx SINE Alu -29 283 1 1106 242 25 43 chrX 37766430 37766752 -124833178 + LTR16C LTR ERVL 161 476 -15 1450 166 22 27 chrX 37767442 37767747 -124832183 + MER61B LTR ERV1 1 396 -28 3268 128 29 37 chrX 37767756 37768114 -124831816 + MER61B-int LTR ERV1 1 360 -4857 2170 130 0 3 chrX 37768114 37768413 -124831517 - AluSx SINE Alu -14 298 1 3268 128 29 37 chrX 37768413 37768818 -124831112 + MER61B-int LTR ERV1 360 840 -4377 28832 81 13 7 chrX 37768818 37768896 -124831034 + MER61B-int LTR ERV1 958 1034 -4183 2424 86 0 0 chrX 37768896 37769197 -124830733 - AluY SINE Alu -10 301 1 28832 81 13 7 chrX 37769197 37773311 -124826619 + MER61B-int LTR ERV1 1034 5217 0 1493 158 28 12 chrX 37773311 37773610 -124826320 + MER61B LTR ERV1 1 396 -28 2604 83 26 9 chrX 37773652 37774001 -124825929 + THE1A LTR MaLR 1 355 0 278 212 10 131 chrX 37775398 37775497 -124824433 - L2 LINE L2 -2 3311 3225 1743 216 41 51 chrX 37775504 37775874 -124824056 - MER31A LTR ERV1 0 485 120 5385 78 5 6 chrX 37775874 37776542 -124823388 + PABL_B LTR ERV1 1 667 0 1743 216 41 51 chrX 37776542 37776661 -124823269 - MER31A LTR ERV1 -365 120 1 27101 108 47 53 chrX 37776695 37777564 -124822366 - MER31A-int LTR ERV1 -151 4785 3912 2486 182 57 51 chrX 37777564 37778028 -124821902 + MLT2B2 LTR ERVL 3 472 -43 369 0 0 0 chrX 37778028 37778069 -124821861 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 2486 182 57 51 chrX 37778069 37778114 -124821816 + MLT2B2 LTR ERVL 472 515 0 27101 108 47 53 chrX 37778114 37781037 -124818893 - MER31A-int LTR ERV1 -1024 3912 1022 1135 87 0 7 chrX 37781037 37781186 -124818744 + L1PA10 LINE L1 6019 6166 -2 27101 108 47 53 chrX 37781186 37782004 -124817926 - MER31A-int LTR ERV1 -3914 1022 201 372 173 0 53 chrX 37782063 37782138 -124817792 - MER31A-int LTR ERV1 -4669 267 197 436 145 0 0 chrX 37782145 37782214 -124817716 - Alu SINE Alu 0 312 244 1361 39 0 0 chrX 37782276 37782432 -124817498 - MER31A-int LTR ERV1 -4763 173 18 1626 190 138 41 chrX 37782485 37782927 -124817003 - MER31A LTR ERV1 0 485 1 198 0 0 0 chrX 37783132 37783154 -124816776 + (A)n Simple_repeat Simple_repeat 1 22 0 214 342 136 41 chrX 37783154 37783663 -124816267 - L2 LINE L2 -375 2939 2383 317 259 129 0 chrX 37783767 37783883 -124816047 + MER112 DNA MER1_type 3 133 -127 417 396 0 0 chrX 37783950 37784109 -124815821 + (CGG)n Simple_repeat Simple_repeat 2 160 0 210 139 0 0 chrX 37786490 37786526 -124813404 + (TG)n Simple_repeat Simple_repeat 1 36 0 28 0 0 0 chrX 37787238 37787266 -124812664 + AT_rich Low_complexity Low_complexity 1 28 0 279 274 48 65 chrX 37787624 37787748 -124812182 - L2 LINE L2 -556 2758 2637 818 203 0 59 chrX 37787860 37788022 -124811908 + MER5A DNA MER1_type 14 165 -24 2314 103 0 0 chrX 37788022 37788323 -124811607 - AluSx SINE Alu -11 301 1 818 203 0 59 chrX 37788323 37788347 -124811583 + MER5A DNA MER1_type 165 189 0 321 26 0 0 chrX 37788408 37788446 -124811484 + (TG)n Simple_repeat Simple_repeat 1 38 0 574 316 68 24 chrX 37788837 37789087 -124810843 + MIR SINE MIR 2 262 0 222 316 133 20 chrX 37789157 37789255 -124810675 + L2 LINE L2 3137 3245 -27 296 286 0 13 chrX 37789775 37789852 -124810078 - MIR3 SINE MIR -5 203 128 512 246 56 7 chrX 37790282 37790424 -124809506 + MIR SINE MIR 110 258 -4 5359 70 17 6 chrX 37790578 37791235 -124808695 + PABL_B LTR ERV1 4 667 0 3316 113 36 2 chrX 37791340 37791810 -124808120 - LTR19A LTR ERV1 0 486 1 59953 73 6 10 chrX 37791810 37799257 -124800673 - HERVFH19I LTR ERV1 0 7719 304 252 0 0 0 chrX 37799257 37799285 -124800645 + (GA)n Simple_repeat Simple_repeat 1 28 0 59953 73 6 10 chrX 37799285 37799588 -124800342 - HERVFH19I LTR ERV1 -7415 304 1 3487 96 36 2 chrX 37799588 37800058 -124799872 - LTR19A LTR ERV1 0 486 1 1580 234 22 25 chrX 37800058 37800464 -124799466 + LTR16A LTR ERVL 28 444 -6 24 0 0 0 chrX 37801501 37801525 -124798405 + AT_rich Low_complexity Low_complexity 1 24 0 203 345 74 34 chrX 37802222 37802370 -124797560 + MIR SINE MIR 1 154 -108 434 262 133 52 chrX 37802390 37802623 -124797307 - MIR SINE MIR 0 262 11 722 303 123 24 chrX 37803813 37804575 -124795355 + HAL1 LINE L1 971 1808 -699 201 39 0 0 chrX 37805235 37805261 -124794669 + (CA)n Simple_repeat Simple_repeat 2 27 0 257 192 55 0 chrX 37807334 37807407 -124792523 + LTR16A1 LTR ERVL 49 125 -332 803 268 0 0 chrX 37807442 37807632 -124792298 - MER58A DNA MER1_type -16 208 19 868 275 27 45 chrX 37807641 37807972 -124791958 + LTR16A LTR ERVL 120 444 -6 224 146 0 21 chrX 37808343 37808391 -124791539 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1514 261 29 11 chrX 37809383 37809832 -124790098 - LTR16C LTR ERVL -34 457 1 2313 96 3 0 chrX 37809878 37810170 -124789760 - AluSx SINE Alu -19 293 1 1110 237 137 34 chrX 37810221 37810731 -124789199 + MLT1F1 LTR MaLR 1 564 -3 1689 54 19 0 chrX 37810826 37811031 -124788899 + AluY SINE Alu 83 291 -20 1075 239 61 18 chrX 37811430 37811687 -124788243 + MER2 DNA MER2_type 1 277 -68 5225 91 9 4 chrX 37811687 37812458 -124787472 - L1MA2 LINE L1 0 6304 5530 1075 239 61 18 chrX 37812458 37812530 -124787400 + MER2 DNA MER2_type 277 344 -1 2563 145 34 2 chrX 37813850 37814263 -124785667 - MSTB LTR MaLR 0 426 1 1159 259 58 48 chrX 37814449 37814846 -124785084 - L2 LINE L2 -1 3312 2912 1717 156 0 79 chrX 37815998 37816326 -124783604 - AluSq SINE Alu -11 302 1 902 241 71 5 chrX 37816781 37817005 -124782925 + MIR SINE MIR 3 241 -21 1187 309 16 14 chrX 37817476 37817910 -124782020 + LTR16A LTR ERVL 16 450 0 569 228 82 16 chrX 37819474 37819674 -124780256 + MLT1H1 LTR MaLR 304 555 0 568 274 116 0 chrX 37819746 37819910 -124780020 + MIR SINE MIR 29 211 -51 425 313 28 0 chrX 37820064 37820208 -124779722 + MIR SINE MIR 106 253 -9 489 326 4 19 chrX 37821421 37821685 -124778245 - MIR SINE MIR -1 261 2 1987 143 0 3 chrX 37821966 37822259 -124777671 - AluSp SINE Alu -8 305 14 1497 188 133 86 chrX 37822291 37822823 -124777107 + MLT1F1 LTR MaLR 12 567 0 21 36 0 0 chrX 37823798 37823826 -124776104 + AT_rich Low_complexity Low_complexity 1 28 0 5871 98 16 0 chrX 37823826 37824750 -124775180 - L1PA15 LINE L1 0 6165 5213 417 256 65 36 chrX 37824761 37824929 -124775001 - MER5A DNA MER1_type -6 183 11 233 313 0 0 chrX 37825164 37825231 -124774699 + L2 LINE L2 3204 3270 -2 467 217 174 0 chrX 37826612 37826657 -124773273 - L1MA10 LINE L1 -3 6331 6287 3512 218 69 21 chrX 37826657 37828362 -124771568 - L1ME1 LINE L1 -44 6191 4407 1582 191 188 0 chrX 37828362 37828713 -124771217 - MER47B DNA MER2_type 0 418 2 1082 247 6 18 chrX 37828714 37829046 -124770884 - L1ME1 LINE L1 -1807 4408 4081 1743 196 7 0 chrX 37829113 37829414 -124770516 + AluJo SINE Alu 1 303 -9 1342 224 105 63 chrX 37829428 37829879 -124770051 - MLT1E LTR MaLR -24 551 91 2128 110 40 0 chrX 37829879 37830179 -124769751 + AluSx SINE Alu 1 312 0 1342 224 105 63 chrX 37830179 37830274 -124769656 - MLT1E LTR MaLR -484 91 1 6289 244 49 44 chrX 37830274 37831482 -124768448 - L1ME1 LINE L1 -2139 4076 2875 2853 10 0 0 chrX 37831482 37831793 -124768137 - AluYa5 SINE Alu 0 311 1 6289 244 49 44 chrX 37831793 37832100 -124767830 - L1ME1 LINE L1 -3340 2875 2571 2112 112 0 14 chrX 37832100 37832415 -124767515 + AluSx SINE Alu 1 311 0 6289 244 49 44 chrX 37832415 37834236 -124765694 - L1ME1 LINE L1 -3644 2571 763 2871 70 8 3 chrX 37834236 37834619 -124765311 - L1PA13 LINE L1 -11 6152 5768 6289 244 49 44 chrX 37834619 37835350 -124764580 - L1ME1 LINE L1 -5452 763 37 1654 184 93 37 chrX 37835785 37836160 -124763770 - MSTD LTR MaLR 0 396 1 22 88 0 0 chrX 37837196 37837253 -124762677 + AT_rich Low_complexity Low_complexity 1 57 0 553 292 74 20 chrX 37837343 37837733 -124762197 - L1ME4a LINE L1 -175 5946 5536 882 259 131 40 chrX 37838582 37838659 -124761271 + MLT1H LTR MaLR 1 70 -479 17510 44 2 0 chrX 37838659 37841599 -124758331 + L1PA5 LINE L1 3210 6152 -2 882 259 131 40 chrX 37841599 37841926 -124758004 + MLT1H LTR MaLR 70 442 -107 21 36 0 0 chrX 37843101 37843129 -124756801 + AT_rich Low_complexity Low_complexity 1 28 0 1615 142 98 41 chrX 37843188 37843506 -124756424 - MER1B DNA MER1_type -1 336 1 184 320 0 0 chrX 37843681 37843731 -124756199 + L2 LINE L2 3208 3257 -15 207 0 0 0 chrX 37844557 37844580 -124755350 + (TC)n Simple_repeat Simple_repeat 2 24 0 219 36 0 0 chrX 37844582 37844610 -124755320 + (CA)n Simple_repeat Simple_repeat 1 28 0 288 339 149 33 chrX 37845621 37845863 -124754067 - L2 LINE L2 -2 3270 3001 207 0 0 0 chrX 37847404 37847427 -124752503 + (A)n Simple_repeat Simple_repeat 1 23 0 407 347 20 7 chrX 37847528 37847678 -124752252 - L3 LINE CR1 -10 1567 1416 193 313 75 68 chrX 37847740 37848005 -124751925 + L2 LINE L2 2709 2975 -339 308 186 114 0 chrX 37848131 37848201 -124751729 + L2 LINE L2 3236 3313 0 446 256 169 5 chrX 37848324 37848627 -124751303 - LTR33 LTR ERVL -12 509 110 1229 334 55 28 chrX 37848708 37849325 -124750605 - L3 LINE CR1 -344 1233 600 315 226 21 21 chrX 37849424 37849517 -124750413 + MER103 DNA DNA 1 93 -73 588 275 65 44 chrX 37849659 37849888 -124750042 + MIR SINE MIR 29 262 0 308 300 27 18 chrX 37850075 37850185 -124749745 + L1ME LINE L1 5276 5386 -856 535 303 6 12 chrX 37850301 37850463 -124749467 - MIR SINE MIR -1 261 101 296 235 15 0 chrX 37850477 37850545 -124749385 + L1ME LINE L1 5557 5625 -496 1171 277 73 15 chrX 37850561 37850972 -124748958 + LTR16A LTR ERVL 16 450 0 544 263 67 50 chrX 37851115 37851473 -124748457 + L1MCc LINE L1 21 384 -6039 1578 243 57 21 chrX 37851598 37852546 -124747384 + L1MCc LINE L1 814 1910 -4851 745 261 70 7 chrX 37852559 37852846 -124747084 - MLT1D LTR MaLR -2 503 199 1083 256 46 46 chrX 37852855 37853386 -124746544 + L1MCc LINE L1 2658 3188 -3753 2404 92 0 13 chrX 37853386 37853701 -124746229 + AluSq SINE Alu 1 311 -2 1083 256 46 46 chrX 37853701 37853774 -124746156 + L1MCc LINE L1 3188 3260 -3681 1977 172 42 3 chrX 37853774 37854129 -124745801 + MER93b LTR ERV1 5 373 0 1083 256 46 46 chrX 37854129 37854239 -124745691 + L1MCc LINE L1 3260 3336 -3605 998 205 80 86 chrX 37854244 37854630 -124745300 + L1MD3 LINE L1 6801 7184 -811 566 240 0 0 chrX 37854645 37854770 -124745160 + MLT1F1 LTR MaLR 1 125 -442 2899 173 39 2 chrX 37854771 37855332 -124744598 + L1MD3 LINE L1 7400 7981 -14 2082 93 23 33 chrX 37855334 37855634 -124744296 - AluY SINE Alu -14 297 1 283 250 42 10 chrX 37855672 37855768 -124744162 + MLT1J2 LTR MaLR 344 442 -8 27 49 0 0 chrX 37855950 37855991 -124743939 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 37856636 37856658 -124743272 + AT_rich Low_complexity Low_complexity 1 22 0 275 289 58 10 chrX 37856705 37856809 -124743121 - MIR SINE MIR -141 121 13 21 0 0 0 chrX 37856999 37857020 -124742910 + AT_rich Low_complexity Low_complexity 1 21 0 567 289 102 49 chrX 37857073 37857319 -124742611 - MIR SINE MIR -2 260 2 904 252 29 0 chrX 37858195 37858405 -124741525 + MIR SINE MIR 43 258 -4 1893 146 7 3 chrX 37858678 37858966 -124740964 + AluJb SINE Alu 1 289 -23 225 308 0 26 chrX 37859043 37859121 -124740809 - L2 LINE L2 -61 3252 3177 555 268 252 4 chrX 37859129 37859383 -124740547 + L2 LINE L2 2827 3143 -170 3630 259 40 14 chrX 37859410 37860379 -124739551 - L2 LINE L2 -508 2806 1813 1178 281 97 21 chrX 37860379 37860814 -124739116 - L2 LINE L2 -2846 468 1 797 167 0 8 chrX 37861174 37861300 -124738630 - FLAM_A SINE Alu -8 125 1 186 133 0 0 chrX 37862001 37862031 -124737899 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1199 235 55 48 chrX 37862322 37862756 -124737174 - MLT1J1 LTR MaLR -2 444 8 233 155 17 0 chrX 37864087 37864145 -124735785 + GA-rich Low_complexity Low_complexity 2 60 0 252 0 0 0 chrX 37865491 37865519 -124734411 + (T)n Simple_repeat Simple_repeat 1 28 0 1179 306 47 10 chrX 37866199 37866604 -124733326 + LTR16C LTR ERVL 71 490 -1 537 252 96 28 chrX 37866996 37867291 -124732639 + LTR33 LTR ERVL 173 521 0 369 277 6 77 chrX 37867291 37867469 -124732461 + MIR SINE MIR 25 189 -73 1207 176 0 0 chrX 37867884 37868072 -124731858 + MER5A DNA MER1_type 2 189 0 1219 228 42 9 chrX 37868244 37868678 -124731252 - MLT1E LTR MaLR 0 593 50 1211 222 51 28 chrX 37868844 37869300 -124730630 - MLT1E-int LTR MaLR -766 605 15 979 251 70 0 chrX 37869334 37869577 -124730353 - MLT1E LTR MaLR 0 593 334 926 259 56 0 chrX 37869585 37869801 -124730129 - MLT1E LTR MaLR -365 228 1 406 355 35 12 chrX 37870214 37870386 -124729544 + MER5B DNA MER1_type 1 176 -2 320 152 15 0 chrX 37870588 37870654 -124729276 + CT-rich Low_complexity Low_complexity 3 69 0 1673 203 42 97 chrX 37871421 37872025 -124727905 - L1ME1 LINE L1 -7 6228 5661 4843 104 5 36 chrX 37872025 37872778 -124727152 + L1PB3 LINE L1 5420 6149 -5 1673 203 42 97 chrX 37872778 37872834 -124727096 - L1ME1 LINE L1 -574 5661 5604 346 273 34 0 chrX 37872837 37872925 -124727005 + L1MC4 LINE L1 6612 6702 -1340 293 0 27 0 chrX 37872945 37872982 -124726948 + (GA)n Simple_repeat Simple_repeat 2 39 0 1667 156 0 56 chrX 37873008 37873296 -124726634 - AluJo SINE Alu -40 272 1 370 176 8 131 chrX 37873298 37873438 -124726492 - L1ME1 LINE L1 -682 5553 5437 1260 204 70 77 chrX 37873438 37874011 -124725919 - L1ME1 LINE L1 -2539 3676 3108 1024 262 0 7 chrX 37874010 37874285 -124725645 - L1ME1 LINE L1 -6086 310 38 * 408 245 86 36 chrX 37874596 37874735 -124725195 - MLT1J LTR MaLR -110 401 256 312 70 0 0 chrX 37875390 37875433 -124724497 + (TC)n Simple_repeat Simple_repeat 1 43 0 299 256 42 3 chrX 37875759 37875871 -124724059 + MIR SINE MIR 37 157 -63 214 331 45 11 chrX 37875912 37876028 -124723902 + MIR SINE MIR 10 137 -71 194 250 0 91 chrX 37876009 37876097 -124723833 + L2 LINE L2 3229 3308 -5 * 309 26 0 0 chrX 37877114 37877152 -124722778 + (TA)n Simple_repeat Simple_repeat 1 38 0 252 0 0 0 chrX 37877151 37877179 -124722751 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 583 262 73 31 chrX 37877607 37877875 -124722055 + MLT1H LTR MaLR 14 333 -216 342 189 31 1 chrX 37877951 37878039 -124721891 + MLT1F LTR MaLR 453 531 -11 987 243 67 80 chrX 37878300 37878826 -124721104 + LTR33 LTR ERVL 3 521 0 277 195 115 23 chrX 37879069 37879156 -124720774 + MIR SINE MIR 149 243 -19 592 133 0 0 chrX 37880023 37880113 -124719817 + MER39 LTR ERV1 1 90 -617 1378 155 34 21 chrX 37880144 37880540 -124719390 + LTR32 LTR ERVL 14 471 0 2589 118 12 16 chrX 37880541 37880965 -124718965 + MER39 LTR ERV1 286 707 0 1399 198 136 9 chrX 37882705 37883155 -124716775 - MER69 DNA AcHobo -10 2516 2010 703 273 115 18 chrX 37883140 37883418 -124716512 - MER69 DNA AcHobo -1944 582 278 * 1176 216 100 43 chrX 37883418 37883583 -124716347 + MLT1D LTR MaLR 1 155 -350 2431 80 3 0 chrX 37883583 37883882 -124716048 - AluSp SINE Alu -13 300 1 1176 216 100 43 chrX 37883882 37884087 -124715843 + MLT1D LTR MaLR 155 392 -113 362 292 10 10 chrX 37884099 37884195 -124715735 - MIR SINE MIR -75 133 38 222 400 35 9 chrX 37884773 37884888 -124715042 + L2 LINE L2 3136 3253 -19 255 322 84 42 chrX 37884894 37885037 -124714893 + MIR SINE MIR 20 168 -94 833 289 44 4 chrX 37885712 37886158 -124713772 + L1MDb LINE L1 7 549 -5860 2214 216 40 12 chrX 37886159 37886780 -124713150 + L1MD2 LINE L1 5620 6242 0 404 266 0 71 chrX 37887394 37887499 -124712431 + MIR SINE MIR 119 211 -51 1883 163 47 24 chrX 37887499 37887880 -124712050 + MLT1B LTR MaLR 1 390 0 404 266 0 71 chrX 37887880 37887928 -124712002 + MIR SINE MIR 211 261 -1 1784 192 21 0 chrX 37888802 37889135 -124710795 - MER58B DNA MER1_type -1 340 1 783 293 98 0 chrX 37889387 37889633 -124710297 + L2 LINE L2 2510 2779 -535 1478 270 23 3 chrX 37889672 37890061 -124709869 - LTR16A LTR ERVL -38 412 16 1343 265 58 44 chrX 37890076 37890238 -124709692 + L2 LINE L2 2828 2986 -327 2562 70 0 0 chrX 37890238 37890540 -124709390 - AluY SINE Alu -9 302 1 1343 265 58 44 chrX 37890540 37890856 -124709074 + L2 LINE L2 2986 3313 0 289 193 0 18 chrX 37892111 37892168 -124707762 - LTR67 LTR ERVL -400 157 102 226 298 106 0 chrX 37892345 37892439 -124707491 - L2 LINE L2 0 3272 3169 218 365 0 0 chrX 37893052 37893137 -124706793 - MIR SINE MIR -92 170 86 286 292 28 0 chrX 37893435 37893507 -124706423 + (CATG)n Simple_repeat Simple_repeat 1 74 0 2896 143 0 19 chrX 37893694 37894175 -124705755 - L1PA16 LINE L1 -6 6160 5689 21 0 0 0 chrX 37894496 37894517 -124705413 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 0 0 chrX 37894842 37894889 -124705041 + L2 LINE L2 3138 3184 -88 425 253 65 85 chrX 37895899 37896350 -124703580 - MLT1H LTR MaLR 0 595 114 256 273 20 50 chrX 37896597 37896696 -124703234 + MIR SINE MIR 83 178 -84 1121 165 21 59 chrX 38097583 38097762 -124502168 + MLT2B3 LTR ERVL 328 497 -57 216 0 0 0 chrX 38097762 38097786 -124502144 + (TC)n Simple_repeat Simple_repeat 2 25 0 1121 165 21 59 chrX 38097786 38097842 -124502088 + MLT2B3 LTR ERVL 497 554 0 22 0 0 0 chrX 38097951 38097973 -124501957 + AT_rich Low_complexity Low_complexity 1 22 0 650 320 76 25 chrX 38098021 38098455 -124501475 - L1M4 LINE L1 -1313 4833 4378 289 288 68 46 chrX 38098781 38099132 -124500798 - L1M4 LINE L1 -2193 3953 3595 806 169 114 45 chrX 38099529 38099730 -124500200 + AluJb SINE Alu 87 301 -11 523 286 33 24 chrX 38099731 38099944 -124499986 - LTR16A1 LTR ERVL -86 371 157 2854 179 42 31 chrX 38100079 38100131 -124499799 - MLT2B3 LTR ERVL 0 554 504 231 36 0 0 chrX 38100131 38100159 -124499771 + (GA)n Simple_repeat Simple_repeat 2 29 0 2854 179 42 31 chrX 38100159 38100653 -124499277 - MLT2B3 LTR ERVL -50 504 2 225 0 0 0 chrX 38101069 38101094 -124498836 + (TC)n Simple_repeat Simple_repeat 1 25 0 933 215 188 27 chrX 38101104 38101402 -124498528 + MLT1G3 LTR MaLR 170 515 -15 * 1314 181 26 26 chrX 38101398 38101664 -124498266 - MSTD LTR MaLR -128 268 3 2453 78 0 3 chrX 38101694 38102002 -124497928 + AluY SINE Alu 1 307 -4 21 0 0 0 chrX 38102175 38102196 -124497734 + AT_rich Low_complexity Low_complexity 1 21 0 493 282 81 35 chrX 38102264 38102633 -124497297 + L1ME4a LINE L1 5391 5776 -345 6101 36 0 1 chrX 38102721 38103479 -124496451 - L1PA5 LINE L1 -6 6148 5392 327 223 165 33 chrX 38103510 38103783 -124496147 + L1ME4a LINE L1 5808 6116 -5 358 200 15 0 chrX 38104303 38104368 -124495562 - L2 LINE L2 0 3313 3248 2193 131 78 0 chrX 38104435 38104795 -124495135 + MLT1B LTR MaLR 3 390 0 1851 133 29 48 chrX 38105154 38105530 -124494400 - THE1C LTR MaLR 0 375 7 31 0 0 0 chrX 38105889 38105920 -124494010 + AT_rich Low_complexity Low_complexity 1 31 0 20087 163 26 18 chrX 38106329 38107979 -124491951 - L1 LINE L1 -2363 5202 3567 318 87 0 0 chrX 38107979 38108025 -124491905 + (TG)n Simple_repeat Simple_repeat 1 46 0 20087 163 26 18 chrX 38108025 38108547 -124491383 - L1 LINE L1 -3998 3567 3051 2510 61 0 0 chrX 38108547 38108843 -124491087 - AluY SINE Alu -15 296 1 20087 163 26 18 chrX 38108843 38109603 -124490327 - L1 LINE L1 -4514 3051 2299 2428 85 0 0 chrX 38109603 38109908 -124490022 - AluSg SINE Alu -5 305 1 20087 163 26 18 chrX 38109908 38112103 -124487827 - L1 LINE L1 -5266 2299 25 522 264 7 14 chrX 38112486 38112634 -124487296 - L2 LINE L2 0 3313 3167 2856 135 74 2 chrX 38112850 38113361 -124486569 - MER34B LTR ERV1 0 565 18 434 327 165 26 chrX 38113363 38113944 -124485986 - L2 LINE L2 -943 2371 1710 2528 51 0 0 chrX 38114377 38114673 -124485257 + AluY SINE Alu 1 296 -15 3879 97 2 5 chrX 38114749 38115305 -124484625 - MER41A LTR ERV1 0 554 1 2356 79 10 0 chrX 38115337 38115642 -124484288 + AluY SINE Alu 1 308 -3 273 219 26 97 chrX 38115684 38115798 -124484132 + L2 LINE L2 2391 2496 -818 747 308 74 27 chrX 38115835 38116134 -124483796 + L2 LINE L2 2484 2796 -518 3020 190 80 3 chrX 38116135 38116809 -124483121 - LTR48 LTR ERV1 0 787 62 718 155 11 33 chrX 38116811 38116992 -124482938 + CT-rich Low_complexity Low_complexity 3 179 0 1595 90 35 4 chrX 38117002 38117257 -124482673 - LTR48-int LTR ERV1 -251 4764 4502 * 6556 89 42 32 chrX 38117253 38118363 -124481567 - MER4A-int LTR ERV1 -1641 4957 3837 3521 129 119 39 chrX 38118362 38119011 -124480919 - MER4A-int LTR ERV1 -2917 3681 2941 * 2425 39 0 0 chrX 38119011 38119346 -124480584 + AluY SINE Alu 1 335 0 3521 129 119 39 chrX 38119346 38119569 -124480361 - MER4A-int LTR ERV1 -3657 2941 2737 1302 146 75 0 chrX 38119569 38119808 -124480122 + LTR8 LTR ERV1 1 257 -434 4171 86 53 9 chrX 38119808 38120509 -124479421 - MER4A-int LTR ERV1 -4103 2495 1764 5576 106 72 23 chrX 38120531 38121001 -124478929 - MER4A-int LTR ERV1 -5600 1158 713 2311 112 77 26 chrX 38121001 38121429 -124478501 + LTR7 LTR ERV1 1 450 0 5576 106 72 23 chrX 38121429 38121537 -124478393 - MER4A-int LTR ERV1 -6045 713 612 2492 63 7 0 chrX 38121537 38121838 -124478092 - AluY SINE Alu -8 303 1 5576 106 72 23 chrX 38121838 38122174 -124477756 - MER4A-int LTR ERV1 -6146 612 198 1350 226 39 7 chrX 38122235 38122540 -124477390 - MER4A-int LTR ERV1 -4163 2168 1854 189 0 0 0 chrX 38122588 38122609 -124477321 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2608 81 149 14 chrX 38122690 38123238 -124476692 - MER4A-int LTR ERV1 -5912 686 1 1715 93 160 83 chrX 38123241 38123616 -124476314 - MER4A LTR ERV1 0 664 261 568 141 0 10 chrX 38123616 38123715 -124476215 - MER4A LTR ERV1 -566 98 1 488 285 106 0 chrX 38123728 38123851 -124476079 + L2 LINE L2 3136 3271 -1 725 207 110 35 chrX 38123983 38124210 -124475720 + L1ME3A LINE L1 5925 6168 -2 186 313 100 56 chrX 38124454 38124614 -124475316 - MIR SINE MIR -63 199 33 602 284 70 87 chrX 38125517 38125962 -124473968 + LTR16A LTR ERVL 1 437 -13 379 297 97 35 chrX 38126391 38126855 -124473075 + L1ME4a LINE L1 5393 5885 -236 2348 218 10 58 chrX 38128111 38128325 -124471605 + L1ME1 LINE L1 5499 5722 -444 2272 107 3 0 chrX 38128325 38128624 -124471306 - AluSx SINE Alu -12 300 1 2348 218 10 58 chrX 38128624 38129105 -124470825 + L1ME1 LINE L1 5722 6161 -5 2176 92 55 0 chrX 38129123 38129415 -124470515 + AluSg SINE Alu 1 308 -2 3537 122 61 42 chrX 38129611 38130252 -124469678 - MER39B LTR ERV1 0 653 1 2321 100 3 0 chrX 38130326 38130626 -124469304 + AluSq SINE Alu 1 301 -12 351 156 0 0 chrX 38131678 38131742 -124468188 - L1MC4a LINE L1 -119 7689 7626 3064 139 51 16 chrX 38131958 38132505 -124467425 - MER34C LTR ERV1 0 585 20 2350 148 138 16 chrX 38132505 38133005 -124466925 + LTR48 LTR ERV1 1 561 -226 3603 107 4 4 chrX 38133007 38133514 -124466416 - MER84 LTR ERV1 0 507 1 9801 106 26 8 chrX 38133514 38134992 -124464938 - MER84-int LTR ERV1 0 4954 3451 * 15831 87 24 8 chrX 38134988 38137231 -124462699 - MER84-int LTR ERV1 -2674 2280 1 1999 105 0 41 chrX 38137231 38137330 -124462600 - MER84 LTR ERVI 0 507 405 2146 124 0 0 chrX 38137330 38137629 -124462301 - AluSx SINE Alu -9 303 5 1999 105 0 41 chrX 38137629 38137844 -124462086 - MER84 LTR ERVI -102 405 206 797 194 59 11 chrX 38137842 38138028 -124461902 - Charlie4 DNA MER1_type -1766 195 1 * 2301 79 0 30 chrX 38138704 38139009 -124460921 - AluSx SINE Alu -16 296 1 1130 262 82 54 chrX 38139119 38139622 -124460308 - LTR33 LTR ERVL -3 518 2 350 185 65 0 chrX 38141049 38141141 -124458789 - MLT1J LTR MaLR 0 511 414 835 216 131 5 chrX 38141212 38141434 -124458496 - MLT1J LTR MaLR -261 250 1 378 182 0 0 chrX 38141710 38141776 -124458154 - MER45B DNA AcHobo 0 1040 975 701 177 0 31 chrX 38141787 38141917 -124458013 + FLAM_A SINE Alu 1 126 -7 937 193 78 46 chrX 38141943 38142161 -124457769 - MER45B DNA AcHobo -815 225 1 234 307 35 9 chrX 38142525 38142640 -124457290 - HAL1b LINE L1 -786 562 472 1871 255 73 43 chrX 38142669 38142779 -124457151 - L1MC4 LINE L1 -15 8027 7922 2244 118 0 3 chrX 38142779 38143084 -124456846 - AluSp SINE Alu -9 304 1 1871 255 73 43 chrX 38143084 38143184 -124456746 - L1MC4 LINE L1 -120 7922 7826 2264 101 0 7 chrX 38143184 38143481 -124456449 + AluSg SINE Alu 1 295 -15 1871 255 73 43 chrX 38143481 38143835 -124456095 - L1MC4 LINE L1 -216 7826 7484 2471 71 3 0 chrX 38143835 38144132 -124455798 - AluSp SINE Alu -15 298 1 1871 255 73 43 chrX 38144132 38144582 -124455348 - L1MC4 LINE L1 -558 7484 6981 300 250 50 12 chrX 38145092 38145172 -124454758 - L1MC4a LINE L1 -1685 6123 6041 211 289 10 10 chrX 38145187 38145284 -124454646 + (TA)n Simple_repeat Simple_repeat 2 98 0 2367 81 3 0 chrX 38145308 38145604 -124454326 - AluSp SINE Alu -16 297 1 1319 213 27 43 chrX 38145608 38145979 -124453951 - L1MC4a LINE L1 -1926 5882 5518 375 283 35 112 chrX 38146267 38146553 -124453377 + HAL1b LINE L1 100 363 -985 353 306 90 90 chrX 38146607 38147074 -124452856 + L1ME LINE L1 4560 5026 -1120 2319 110 0 0 chrX 38147079 38147379 -124452551 + AluSx SINE Alu 1 300 -12 252 0 0 0 chrX 38147512 38147540 -124452390 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7540 26 5 0 chrX 38147540 38148494 -124451436 - L1PA4 LINE L1 -12 6143 5188 842 315 26 22 chrX 38148637 38149091 -124450839 + L1ME LINE L1 5328 5783 -338 216 0 0 0 chrX 38149113 38149137 -124450793 + (TA)n Simple_repeat Simple_repeat 2 25 0 260 320 13 0 chrX 38149178 38149253 -124450677 - MIR SINE MIR -10 252 177 1501 226 86 24 chrX 38149259 38149341 -124450589 + LTR33 LTR ERVL 1 77 -444 2951 138 88 2 chrX 38149341 38149855 -124450075 - LTR64 LTR ERVK 0 558 1 1501 226 86 24 chrX 38149855 38150263 -124449667 + LTR33 LTR ERVL 77 521 0 257 224 35 0 chrX 38150283 38150341 -124449589 - MIR SINE MIR -121 141 82 410 316 30 6 chrX 38150463 38150631 -124449299 + L2 LINE L2 2197 2368 -946 402 323 201 29 chrX 38150631 38151328 -124448602 + L2 LINE L2 2489 3312 -1 2451 70 3 0 chrX 38151662 38151961 -124447969 - AluSp SINE Alu -13 300 1 783 121 0 0 chrX 38152323 38152463 -124447467 + (CCCCG)n Simple_repeat Simple_repeat 4 143 0 328 281 171 79 chrX 38152739 38153258 -124446672 + L1M2 LINE L1 757 1323 -5526 518 269 65 32 chrX 38154527 38154713 -124445217 - MIR SINE MIR -7 255 64 339 25 0 0 chrX 38154971 38155011 -124444919 + (TG)n Simple_repeat Simple_repeat 1 40 0 380 201 0 38 chrX 38155020 38155204 -124444726 + (TA)n Simple_repeat Simple_repeat 2 178 0 216 67 0 0 chrX 38155888 38155918 -124444012 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 532 198 8 24 chrX 38156326 38156452 -124443478 + MER69 DNA AcHobo 2400 2523 -3 1874 151 6 6 chrX 38157815 38158132 -124441798 - L1PB4 LINE L1 -6 6150 5834 261 375 34 40 chrX 38158868 38159044 -124440886 - L3 LINE CR1 -12 1565 1391 24 32 0 0 chrX 38160144 38160175 -124439755 + AT_rich Low_complexity Low_complexity 1 31 0 221 318 8 48 chrX 38161374 38161500 -124438430 - MIR3 SINE MIR -80 128 8 197 211 0 105 chrX 38162363 38162439 -124437491 - L2 LINE L2 -185 3087 3020 181 152 22 87 chrX 38162574 38162620 -124437310 - L2 LINE L2 -1 3312 3270 347 255 53 0 chrX 38163155 38163249 -124436681 + MER103 DNA DNA 44 142 -24 428 0 0 19 chrX 38163691 38163744 -124436186 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 1608 265 111 64 chrX 38164130 38164799 -124435131 + L2 LINE L2 2324 3034 -279 1830 59 13 4 chrX 38164799 38165036 -124434894 + L1PA5 LINE L1 5912 6150 -4 1608 265 111 64 chrX 38165036 38165330 -124434600 + L2 LINE L2 3034 3313 0 623 282 106 17 chrX 38165829 38166249 -124433681 - L1ME LINE L1 -423 5698 5265 259 287 97 15 chrX 38166544 38166812 -124433118 - L1ME LINE L1 -1315 4831 4542 25 23 0 23 chrX 38166991 38167016 -124432914 + AT_rich Low_complexity Low_complexity 1 26 -16 2020 122 3 30 chrX 38167016 38167312 -124432618 + AluSg SINE Alu 1 288 -22 25 23 0 23 chrX 38167312 38167329 -124432601 + AT_rich Low_complexity Low_complexity 26 42 0 287 265 105 19 chrX 38167433 38167595 -124432335 - L1ME LINE L1 -1944 4202 4027 210 281 0 0 chrX 38167855 38167912 -124432018 - L2 LINE L2 -1370 1944 1888 395 327 111 13 chrX 38167926 38168152 -124431778 - MIR SINE MIR -1 261 14 42583 34 3 2 chrX 38168336 38174483 -124425447 - L1PA3 LINE L1 -3 6152 2 553 256 126 51 chrX 38174528 38174656 -124425274 - L2 LINE L2 -9 3304 3187 261 0 0 0 chrX 38174656 38174685 -124425245 + (TG)n Simple_repeat Simple_repeat 2 30 0 553 256 126 51 chrX 38174685 38174810 -124425120 - L2 LINE L2 -126 3187 3032 376 260 10 0 chrX 38177693 38177797 -124422133 + L1ME LINE L1 5595 5699 -422 330 242 10 20 chrX 38178161 38178260 -124421670 - LTR16B LTR ERVL -12 452 355 423 236 130 0 chrX 38178285 38178408 -124421522 - L1MC5 LINE L1 -521 7440 7302 200 122 24 0 chrX 38178420 38178461 -124421469 + C-rich Low_complexity Low_complexity 5 46 0 2087 206 44 63 chrX 38178468 38179307 -124420623 - L1MC5 LINE L1 -658 7303 6476 3406 161 39 23 chrX 38179721 38179767 -124420163 + L1MC3 LINE L1 6601 6645 -1140 2537 63 0 0 chrX 38179767 38180067 -124419863 - AluY SINE Alu -11 300 1 3406 161 39 23 chrX 38180067 38180721 -124419209 + L1MC3 LINE L1 6645 7312 -473 255 31 0 0 chrX 38181836 38181868 -124418062 + (CA)n Simple_repeat Simple_repeat 2 33 0 342 0 0 0 chrX 38182423 38182461 -124417469 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2207 108 6 13 chrX 38182751 38183066 -124416864 - AluSq SINE Alu 0 313 1 379 289 43 52 chrX 38183067 38183299 -124416631 - MLT1J LTR MaLR -172 339 110 455 242 186 0 chrX 38183536 38183660 -124416270 + MER5A DNA MER1_type 11 157 -32 205 266 210 40 chrX 38183560 38183684 -124416246 - MER5A DNA MER1_type -23 166 22 * 424 308 57 19 chrX 38183773 38183932 -124415998 + MIR3 SINE MIR 30 194 -14 1968 151 0 19 chrX 38184403 38184714 -124415216 + AluSp SINE Alu 1 305 -8 1968 269 90 12 chrX 38185559 38186149 -124413781 + L2 LINE L2 2304 2939 -375 450 302 197 31 chrX 38186150 38186168 -124413762 - L1MEc LINE L1 -3251 2964 2950 1503 130 0 0 chrX 38186168 38186384 -124413546 - AluSg/x SINE Alu -13 299 84 450 302 197 31 chrX 38186384 38186888 -124413042 - L1MEc LINE L1 -3265 2950 2355 1229 112 6 0 chrX 38186960 38187152 -124412778 - AluSg/x SINE Alu 0 306 114 302 320 35 51 chrX 38187152 38187349 -124412581 - L1MEc LINE L1 -4110 2286 2093 518 286 95 67 chrX 38187775 38188058 -124411872 - HAL1 LINE L1 -938 1569 1279 452 272 87 42 chrX 38188065 38188514 -124411416 - L1MEc LINE L1 -5008 1197 729 596 284 73 41 chrX 38188653 38188988 -124410942 + L1M4 LINE L1 2921 3244 -2902 1754 179 37 3 chrX 38188988 38189285 -124410645 + AluJo SINE Alu 1 307 -5 596 284 73 41 chrX 38189285 38189760 -124410170 + L1M4 LINE L1 3244 3768 -2378 399 41 0 0 chrX 38189887 38189936 -124409994 + (CA)n Simple_repeat Simple_repeat 2 50 0 253 269 15 0 chrX 38190314 38190381 -124409549 + L1MEd LINE L1 599 666 -5453 23 0 0 0 chrX 38190493 38190516 -124409414 + AT_rich Low_complexity Low_complexity 1 23 0 211 205 0 0 chrX 38191441 38191480 -124408450 + T-rich Low_complexity Low_complexity 2 40 0 249 33 0 0 chrX 38191666 38191696 -124408234 + (CA)n Simple_repeat Simple_repeat 2 31 0 507 248 30 8 chrX 38192837 38192970 -124406960 - MIR SINE MIR -48 214 79 2100 149 0 3 chrX 38193334 38193643 -124406287 + AluJb SINE Alu 1 308 -4 2441 79 0 22 chrX 38194333 38194651 -124405279 + AluY SINE Alu 1 311 0 419 286 167 11 chrX 38194882 38195098 -124404832 - MIR SINE MIR 0 262 16 459 260 20 41 chrX 38196413 38196559 -124403371 - L2 LINE L2 -13 3300 3158 246 62 0 0 chrX 38196814 38196846 -124403084 - U2 snRNA snRNA -153 35 4 836 129 0 16 chrX 38196890 38197014 -124402916 + FLAM_C SINE Alu 11 132 -11 28 0 0 0 chrX 38197014 38197042 -124402888 + AT_rich Low_complexity Low_complexity 1 28 0 727 133 7 44 chrX 38199302 38199437 -124400493 - L1MB3 LINE L1 -12 6171 6042 465 267 53 7 chrX 38201584 38201734 -124398196 - MER103 DNA DNA -7 159 3 8651 181 36 19 chrX 38201810 38203950 -124395980 + L1MB8 LINE L1 3416 5596 -588 968 169 11 6 chrX 38203960 38204137 -124395793 + L1MB8 LINE L1 5998 6175 -3 1857 164 7 3 chrX 38204388 38204510 -124395420 + AluJo SINE Alu 1 121 -191 261 0 0 0 chrX 38204510 38204539 -124395391 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1857 164 7 3 chrX 38204539 38204714 -124395216 + AluJo SINE Alu 121 299 -13 8930 110 17 34 chrX 38205724 38207564 -124392366 - L1P3 LINE L1 -4433 1713 12 833 156 0 30 chrX 38209258 38209393 -124390537 - FLAM_C SINE Alu -2 131 1 2287 118 0 0 chrX 38209527 38209832 -124390098 + AluSq SINE Alu 1 305 -8 1555 73 0 0 chrX 38210103 38210294 -124389636 - AluSg/x SINE Alu -8 304 114 268 174 101 0 chrX 38211822 38211891 -124388039 + MIR SINE MIR 117 192 -70 186 43 0 0 chrX 38213744 38213767 -124386163 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chrX 38213864 38213885 -124386045 + AT_rich Low_complexity Low_complexity 1 21 0 456 148 20 69 chrX 38215196 38215297 -124384633 - LTR16A LTR ERVL -120 330 235 326 294 96 55 chrX 38215550 38215696 -124384234 - L2 LINE L2 0 3272 3121 207 182 0 0 chrX 38216380 38216413 -124383517 + polypyrimidine Low_complexity Low_complexity 2 34 0 1032 210 55 143 chrX 38216963 38217397 -124382533 - MSTD LTR MaLR 0 396 1 398 318 52 23 chrX 38217620 38217793 -124382137 - MER5B DNA MER1_type 0 178 1 1735 171 7 7 chrX 38218154 38218441 -124381489 + AluJb SINE Alu 1 287 -25 221 97 0 0 chrX 38218627 38218658 -124381272 - L2 LINE L2 -12 3301 3271 * 414 309 16 11 chrX 38218641 38218778 -124381152 + MIR3 SINE MIR 22 158 -50 400 277 78 21 chrX 38226646 38226787 -124373143 + MIR3 SINE MIR 32 180 -28 521 287 126 17 chrX 38226896 38227126 -124372804 - LTR16A LTR ERVL 0 450 196 231 297 78 0 chrX 38227427 38227491 -124372439 - L3 LINE CR1 -17 1560 1492 2244 114 0 0 chrX 38227712 38228002 -124371928 + AluSq SINE Alu 5 294 -19 2539 68 0 3 chrX 38228002 38228312 -124371618 + AluSc SINE Alu 1 309 0 33 0 0 0 chrX 38228312 38228345 -124371585 + AT_rich Low_complexity Low_complexity 1 33 0 359 155 146 39 chrX 38229683 38229786 -124370144 - L2 LINE L2 -3 3310 3197 2468 60 30 0 chrX 38230633 38230932 -124368998 - L1PA8 LINE L1 -1 6171 5864 255 61 0 0 chrX 38230977 38231010 -124368920 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 2404 171 106 11 chrX 38231681 38232142 -124367788 - MLT1D LTR MaLR 0 505 1 2043 214 37 0 chrX 38232597 38233026 -124366904 - MER110 LTR ERV1 0 491 47 199 220 17 51 chrX 38233148 38233207 -124366723 + MIR SINE MIR 8 64 -198 304 350 122 21 chrX 38233405 38233809 -124366121 + L2 LINE L2 2624 3054 -259 1857 126 0 4 chrX 38233870 38234139 -124365791 - L1PB1 LINE L1 -8 6143 5876 369 57 19 0 chrX 38234139 38234192 -124365738 + L1P LINE L1 5352 5405 -749 208 356 19 29 chrX 38235976 38236080 -124363850 - L2 LINE L2 -227 3045 2943 302 256 12 0 chrX 38237257 38237343 -124362587 + L2 LINE L2 2231 2317 -997 264 284 28 55 chrX 38237373 38237482 -124362448 + L2 LINE L2 2574 2679 -635 873 290 40 2 chrX 38237497 38237878 -124362052 - LTR16A LTR ERVL -5 445 1 1213 274 65 26 chrX 38237878 38238340 -124361590 + L2 LINE L2 2689 3186 -127 212 0 36 0 chrX 38238340 38238368 -124361562 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1213 274 65 26 chrX 38238368 38238493 -124361437 + L2 LINE L2 3186 3305 -8 309 260 96 41 chrX 38238698 38238844 -124361086 + MIR SINE MIR 3 156 -106 24 0 0 0 chrX 38238910 38238934 -124360996 + AT_rich Low_complexity Low_complexity 1 24 0 673 254 109 109 chrX 38239001 38239587 -124360343 - MLT1L LTR MaLR -8 607 22 201 162 0 0 chrX 38241687 38241724 -124358206 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 410 310 76 16 chrX 38241982 38242166 -124357764 + LTR16C LTR ERVL 297 491 0 219 36 0 0 chrX 38242265 38242293 -124357637 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2094 136 0 0 chrX 38242293 38242579 -124357351 - AluSx SINE Alu -26 286 1 186 296 19 0 chrX 38242855 38242909 -124357021 - MER5B DNA MER1_type -120 58 4 2512 21 0 7 chrX 38243916 38244195 -124355735 + L1PA5 LINE L1 5871 6147 -7 225 94 0 0 chrX 38244195 38244227 -124355703 + (TA)n Simple_repeat Simple_repeat 1 32 0 1903 125 56 0 chrX 38244729 38245017 -124354913 - AluSx SINE Alu -8 304 1 2118 186 47 23 chrX 38245184 38245571 -124354359 + MSTD LTR MaLR 1 396 0 443 258 39 26 chrX 38246523 38246678 -124353252 + MIR3 SINE MIR 46 202 -6 210 378 199 20 chrX 38247268 38247620 -124352310 + L2 LINE L2 2858 3272 0 25 31 0 0 chrX 38247840 38247872 -124352058 + AT_rich Low_complexity Low_complexity 1 32 0 260 333 56 28 chrX 38249387 38249531 -124350399 + MIR3 SINE MIR 61 208 0 756 247 12 0 chrX 38249579 38249633 -124350297 - MIR SINE MIR -96 166 114 1871 259 22 16 chrX 38249633 38250080 -124349850 + LTR16A LTR ERVL 1 450 0 756 247 12 0 chrX 38250080 38250187 -124349743 - MIR SINE MIR -148 114 3 567 286 16 31 chrX 38250193 38250385 -124349545 - MIR SINE MIR -55 207 19 1973 147 9 9 chrX 38250766 38251113 -124348817 + MER47A DNA MER2_type 20 366 0 2204 165 61 10 chrX 38252273 38252680 -124347250 + MSTA LTR MaLR 1 428 0 205 297 139 10 chrX 38253045 38253146 -124346784 + L2 LINE L2 3154 3267 -5 2272 128 19 25 chrX 38253176 38253542 -124346388 + THE1B LTR MaLR 1 364 0 505 152 19 29 chrX 38253938 38254043 -124345887 + L1MB8 LINE L1 6075 6178 0 395 353 0 9 chrX 38254162 38254278 -124345652 - MIR SINE MIR -78 130 16 706 86 9 0 chrX 38254415 38254520 -124345410 - L1MA2 LINE L1 0 6304 6199 21 36 0 0 chrX 38254671 38254699 -124345231 + AT_rich Low_complexity Low_complexity 1 28 0 4069 23 2 0 chrX 38256229 38256703 -124343227 - L1PA4 LINE L1 -4 6151 5677 1201 21 0 0 chrX 38256703 38256845 -124343085 + L1PA4 LINE L1 5531 5672 -483 21 0 0 0 chrX 38258612 38258633 -124341297 + AT_rich Low_complexity Low_complexity 1 21 0 235 220 20 0 chrX 38258700 38258750 -124341180 + CT-rich Low_complexity Low_complexity 2 52 0 252 229 96 60 chrX 38258866 38259032 -124340898 + L1 LINE L1 4875 5046 -1100 355 244 13 13 chrX 38259207 38259285 -124340645 - L2 LINE L2 -50 3263 3186 184 325 25 50 chrX 38259637 38259717 -124340213 + L2 LINE L2 3228 3305 -8 192 282 0 0 chrX 38259861 38259939 -124339991 + GA-rich Low_complexity Low_complexity 4 81 0 8652 78 3 5 chrX 38261601 38262851 -124337079 + L1P LINE L1 2986 4233 -1913 15531 115 20 17 chrX 38263023 38264481 -124335449 - Tigger1 DNA MER2_type 0 2418 946 2075 114 0 0 chrX 38264481 38264785 -124335145 + AluSx SINE Alu 1 304 0 15531 115 20 17 chrX 38264785 38265735 -124334195 - Tigger1 DNA MER2_type -1472 946 1 277 319 0 15 chrX 38266554 38266689 -124333241 + HAL1 LINE L1 773 905 -1602 22 0 0 0 chrX 38267549 38267571 -124332359 + AT_rich Low_complexity Low_complexity 1 22 0 2524 145 16 21 chrX 38267576 38268010 -124331920 - MSTB1 LTR MaLR 0 432 1 485 287 36 36 chrX 38268070 38268349 -124331581 + L1MC4a LINE L1 5615 5893 -1915 48 43 0 0 chrX 38268392 38268461 -124331469 + AT_rich Low_complexity Low_complexity 1 69 0 1987 140 46 17 chrX 38268531 38268882 -124331048 - MER46B DNA MER2_type 0 236 1 575 209 39 0 chrX 38269376 38269505 -124330425 + L1MA9 LINE L1 6142 6275 -37 197 222 0 22 chrX 38269699 38269744 -124330186 - L2 LINE L2 -23 3249 3206 306 266 159 18 chrX 38270014 38270127 -124329803 + L2 LINE L2 3121 3249 -23 786 150 50 62 chrX 38270201 38270361 -124329569 - FRAM SINE Alu -18 158 1 254 200 15 31 chrX 38270457 38270522 -124329408 + L2 LINE L2 3208 3271 -1 606 157 22 135 chrX 38271056 38271106 -124328824 - MER3 DNA MER1_type -31 131 77 2191 93 0 0 chrX 38271106 38271385 -124328545 + AluY SINE Alu 16 294 -17 606 157 22 135 chrX 38271385 38271512 -124328418 - MER3 DNA MER1_type -85 77 21 5841 112 20 1 chrX 38271921 38272955 -124326975 + L1PA16 LINE L1 5105 6155 -11 1597 259 38 45 chrX 38273247 38273494 -124326436 + L2 LINE L2 2626 2873 -440 2238 101 0 3 chrX 38273494 38273790 -124326140 - AluSc SINE Alu -14 295 1 1597 259 38 45 chrX 38273790 38274227 -124325703 + L2 LINE L2 2873 3309 -4 4442 151 52 13 chrX 38274530 38275349 -124324581 - MER21B LTR ERV1 -12 851 1 391 182 0 30 chrX 38276141 38276240 -124323690 + GA-rich Low_complexity Low_complexity 2 97 0 315 256 0 26 chrX 38276277 38276355 -124323575 + L2 LINE L2 3197 3272 0 856 292 82 72 chrX 38277125 38277628 -124322302 + L2 LINE L2 2359 2866 -448 477 315 37 59 chrX 38277604 38277928 -124322002 + L2 LINE L2 2996 3312 -1 * 236 313 112 8 chrX 38278400 38278534 -124321396 - MIR SINE MIR -12 250 103 272 286 43 14 chrX 38279347 38279487 -124320443 - L1ME4a LINE L1 -3 6118 5975 30 89 0 0 chrX 38279973 38280052 -124319878 + AT_rich Low_complexity Low_complexity 1 79 0 275 254 30 67 chrX 38280197 38280362 -124319568 + L1ME LINE L1 5687 5845 -276 275 256 87 35 chrX 38280480 38280652 -124319278 - L1ME4a LINE L1 -202 5919 5739 188 217 14 0 chrX 38280684 38280744 -124319186 + CT-rich Low_complexity Low_complexity 2 65 -6 740 11 0 0 chrX 38280744 38280834 -124319096 - L1PA2 LINE L1 0 6155 6066 2251 60 0 0 chrX 38282289 38282570 -124317360 + L1PA8 LINE L1 5887 6167 -5 247 188 141 16 chrX 38282780 38282844 -124317086 - L2 LINE L2 0 3313 3242 261 167 0 19 chrX 38284033 38284066 -124315864 - MLT2D LTR ERVL -6 514 481 231 36 0 0 chrX 38284066 38284094 -124315836 + (GA)n Simple_repeat Simple_repeat 1 28 0 261 167 0 19 chrX 38284094 38284114 -124315816 - MLT2D LTR ERVL -39 481 462 243 133 0 0 chrX 38284158 38284203 -124315727 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 1633 166 87 6 chrX 38284212 38284544 -124315386 - MLT2D LTR ERVL -54 360 2 1612 117 8 0 chrX 38284661 38284926 -124315004 - L1MA8 LINE L1 -22 6269 6003 2274 199 69 19 chrX 38284957 38285525 -124314405 - L1ME2 LINE L1 -56 6108 5513 3762 187 200 10 chrX 38285635 38286699 -124313231 - L1MD3 LINE L1 -10 7985 6720 951 216 69 0 chrX 38287139 38287357 -124312573 + MIR SINE MIR 20 252 -10 279 54 0 0 chrX 38288307 38288344 -124311586 + (CA)n Simple_repeat Simple_repeat 2 38 0 1983 103 49 0 chrX 38288344 38288607 -124311323 - AluSx SINE Alu -36 276 1 304 315 14 62 chrX 38289421 38289567 -124310363 - MIR SINE MIR -57 205 67 2858 10 0 0 chrX 38289577 38289888 -124310042 + AluY SINE Alu 1 311 0 711 172 77 50 chrX 38289931 38290192 -124309738 + Charlie1 DNA MER1_type 2453 2720 -41 360 303 63 7 chrX 38290307 38290449 -124309481 + MIR SINE MIR 51 200 -62 6719 87 19 10 chrX 38291313 38292325 -124307605 - L1MA2 LINE L1 -4 6300 5280 881 225 92 29 chrX 38292561 38292801 -124307129 - MIR SINE MIR 0 262 8 563 294 81 9 chrX 38292828 38293039 -124306891 - MIR SINE MIR -17 245 20 268 160 0 0 chrX 38293041 38293091 -124306839 - L1MA10 LINE L1 -2 6332 6283 216 0 0 0 chrX 38293319 38293343 -124306587 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1048 222 54 84 chrX 38293343 38293771 -124306159 - L2 LINE L2 -13 3300 2886 371 156 0 22 chrX 38294311 38294401 -124305529 + (TGGA)n Simple_repeat Simple_repeat 2 89 0 1486 245 81 37 chrX 38295324 38295977 -124303953 + L1ME3A LINE L1 5485 6166 -4 444 103 13 13 chrX 38295985 38296063 -124303867 + L1MB8 LINE L1 6092 6169 -9 410 196 10 0 chrX 38296656 38296753 -124303177 + CT-rich Low_complexity Low_complexity 2 99 0 1349 282 183 8 chrX 38296925 38297645 -124302285 + L2 LINE L2 2454 3313 0 1337 133 12 8 chrX 38297715 38297955 -124301975 - L1MB7 LINE L1 -256 5928 5688 280 241 136 34 chrX 38297959 38298086 -124301844 - MIR SINE MIR -63 145 19 1426 266 25 18 chrX 38298780 38299227 -124300703 + LTR16A LTR ERVL 1 450 0 205 321 45 37 chrX 38300322 38300456 -124299474 + MIR SINE MIR 127 261 -1 517 213 102 0 chrX 38300547 38300674 -124299256 + MIR SINE MIR 77 216 -46 317 281 89 60 chrX 38301457 38301649 -124298281 - MIR SINE MIR -34 174 17 417 189 0 0 chrX 38302430 38302520 -124297410 + (CAT)n Simple_repeat Simple_repeat 2 91 0 804 277 29 25 chrX 38302520 38302762 -124297168 - MIR SINE MIR -1 261 19 2523 81 0 0 chrX 38302781 38303088 -124296842 - AluSx SINE Alu -5 307 1 2262 114 3 0 chrX 38304017 38304314 -124295616 + AluSx SINE Alu 1 298 -14 288 200 0 0 chrX 38304428 38304488 -124295442 + (CA)n Simple_repeat Simple_repeat 1 60 0 653 252 13 0 chrX 38304514 38304669 -124295261 + L2 LINE L2 2687 2843 -471 464 269 81 0 chrX 38304673 38304822 -124295108 - MER63A DNA MER1_type -6 204 44 566 248 66 129 chrX 38304862 38305180 -124294750 + L2 LINE L2 2853 3150 -163 422 212 40 10 chrX 38305662 38305761 -124294169 + L2 LINE L2 3151 3252 -61 820 273 144 73 chrX 38306022 38306126 -124293804 - L2 LINE L2 -2 3311 3216 1764 174 22 68 chrX 38306126 38306541 -124293389 - MSTD LTR MaLR 0 396 1 820 273 144 73 chrX 38306541 38306779 -124293151 - L2 LINE L2 -97 3216 2925 1301 224 96 76 chrX 38306779 38307319 -124292611 - MLT1H1 LTR MaLR 0 555 5 820 273 144 73 chrX 38307319 38307440 -124292490 - L2 LINE L2 -388 2925 2814 626 332 32 22 chrX 38308318 38308569 -124291361 + MIR SINE MIR 12 262 0 1469 142 76 7 chrX 38309481 38309784 -124290146 + MER33 DNA MER1_type 1 324 0 375 23 0 0 chrX 38310609 38310653 -124289277 + (TG)n Simple_repeat Simple_repeat 2 45 0 374 258 12 43 chrX 38310957 38311120 -124288810 - HAL1b LINE L1 -19 1329 1172 220 196 0 22 chrX 38311121 38311167 -124288763 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 191 170 21 0 chrX 38311175 38311222 -124288708 + GA-rich Low_complexity Low_complexity 4 51 0 497 217 92 20 chrX 38311248 38311400 -124288530 - HAL1b LINE L1 -200 1148 986 431 267 95 35 chrX 38311411 38311696 -124288234 - HAL1b LINE L1 -413 935 634 2229 139 78 24 chrX 38311996 38312406 -124287524 + Tigger2a DNA MER2_type 3 434 0 218 213 21 0 chrX 38312761 38312808 -124287122 + MIR SINE MIR 104 151 -111 1068 61 0 0 chrX 38316980 38317112 -124282818 - AluSq/x SINE Alu -181 132 1 25 51 0 0 chrX 38318635 38318674 -124281256 + AT_rich Low_complexity Low_complexity 1 39 0 240 209 0 0 chrX 38320011 38320054 -124279876 + L2 LINE L2 3261 3303 -10 3718 94 4 20 chrX 38320106 38320649 -124279281 + L1P3 LINE L1 4 537 -5924 264 26 26 0 chrX 38320632 38320671 -124279259 + L1PA7 LINE L1 6110 6149 -5 * 263 297 30 0 chrX 38320671 38320772 -124279158 + Tigger8 DNA MER2_type 463 566 -100 5374 139 34 30 chrX 38321032 38322818 -124277112 + L1MA7 LINE L1 4498 6291 0 22 0 0 0 chrX 38322818 38322840 -124277090 + AT_rich Low_complexity Low_complexity 1 22 0 489 47 0 0 chrX 38322972 38323036 -124276894 + (CA)n Simple_repeat Simple_repeat 1 64 0 2298 188 54 51 chrX 38324074 38324626 -124275304 + MLT2B3 LTR ERVL 1 554 0 571 285 172 5 chrX 38325041 38325227 -124274703 - MIR SINE MIR -45 217 1 2231 94 0 3 chrX 38326676 38326982 -124272948 + AluSx SINE Alu 1 305 0 539 260 141 6 chrX 38327036 38327213 -124272717 - MIR SINE MIR -50 212 12 2052 111 0 3 chrX 38328122 38328445 -124271485 - AluSx SINE Alu 0 312 24 832 204 168 5 chrX 38328764 38328960 -124270970 - MIR SINE MIR -3 259 32 427 237 17 172 chrX 38329044 38329276 -124270654 - MER91A DNA MER1_type 0 196 1 225 159 91 0 chrX 38329337 38329381 -124270549 + L2 LINE L2 3221 3268 -4 427 296 143 25 chrX 38329593 38329796 -124270134 - MIR SINE MIR 0 262 36 21 82 0 0 chrX 38330788 38330837 -124269093 + AT_rich Low_complexity Low_complexity 1 49 0 834 122 0 0 chrX 38330954 38331077 -124268853 - L1MA3 LINE L1 0 6305 6183 280 299 0 0 chrX 38331680 38331757 -124268173 + MIR SINE MIR 69 145 -117 404 256 15 118 chrX 38331988 38332191 -124267739 + L1MC4 LINE L1 7821 8002 -40 463 49 0 0 chrX 38332633 38332694 -124267236 + AluY SINE Alu 1 61 -249 1732 60 0 9 chrX 38332694 38332912 -124267018 + AluY SINE Alu 96 311 0 2497 156 26 13 chrX 38333116 38333577 -124266353 + MLT1C LTR MaLR 1 467 0 3284 68 5 0 chrX 38333871 38334297 -124265633 + L1PA8 LINE L1 5736 6163 -9 291 54 0 0 chrX 38335014 38335051 -124264879 + (TG)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chrX 38335632 38335664 -124264266 + AT_rich Low_complexity Low_complexity 1 32 0 2278 108 0 0 chrX 38335702 38335998 -124263932 - AluSx SINE Alu -16 296 1 2628 136 21 23 chrX 38336092 38336526 -124263404 - Tigger2a DNA MER2_type -1 433 1 297 0 0 0 chrX 38336699 38336732 -124263198 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 702 35 0 0 chrX 38336731 38336816 -124263114 + (GA)n Simple_repeat Simple_repeat 2 86 0 2146 101 4 0 chrX 38336817 38337094 -124262836 - AluSp SINE Alu -35 278 1 220 320 127 23 chrX 38337986 38338245 -124261685 + L2 LINE L2 2807 3092 -180 3099 289 143 35 chrX 38339028 38340837 -124259093 + L2 LINE L2 1289 3302 -11 270 0 0 0 chrX 38341471 38341501 -124258429 + (TG)n Simple_repeat Simple_repeat 2 31 0 401 296 72 56 chrX 38342674 38343157 -124256773 + L1ME4a LINE L1 5534 6024 -97 211 264 14 14 chrX 38343771 38343843 -124256087 + (TA)n Simple_repeat Simple_repeat 2 73 0 241 177 32 16 chrX 38343885 38343947 -124255983 + (TA)n Simple_repeat Simple_repeat 1 63 0 3159 162 12 18 chrX 38344609 38345209 -124254721 + L1MB7 LINE L1 5588 6183 -1 321 372 99 21 chrX 38345569 38345811 -124254119 - L2 LINE L2 -366 2948 2688 2091 124 9 0 chrX 38346031 38346362 -124253568 + L1MB3 LINE L1 5849 6182 -1 708 230 106 18 chrX 38346481 38346707 -124253223 - LTR16C LTR ERVL -155 336 91 261 57 0 0 chrX 38348470 38348505 -124251425 + (TG)n Simple_repeat Simple_repeat 2 36 0 228 208 104 0 chrX 38348529 38348577 -124251353 + L2 LINE L2 3214 3266 -6 256 309 55 50 chrX 38349434 38349654 -124250276 + L2 LINE L2 855 1075 -2239 2411 86 0 0 chrX 38350136 38350439 -124249491 + AluY SINE Alu 9 311 0 642 275 76 9 chrX 38350577 38350876 -124249054 - LTR16A LTR ERVL -11 439 66 373 321 82 8 chrX 38351170 38351304 -124248626 + L2 LINE L2 3129 3272 0 558 275 150 4 chrX 38352072 38352352 -124247578 + L1ME4a LINE L1 5547 5867 -254 262 222 60 34 chrX 38352432 38352549 -124247381 + L1ME4a LINE L1 5993 6112 -9 2302 83 0 0 chrX 38353287 38353589 -124246341 - AluSc SINE Alu -7 302 1 2069 120 0 3 chrX 38355561 38355874 -124244056 - AluSx SINE Alu 0 312 1 348 248 92 18 chrX 38356032 38356141 -124243789 - L1ME4a LINE L1 -12 6109 5993 218 296 114 0 chrX 38356151 38356239 -124243691 - MIR3 SINE MIR -109 99 2 971 230 102 17 chrX 38356598 38356833 -124243097 - MIR SINE MIR 0 262 8 37 23 0 0 chrX 38357164 38357208 -124242722 + AT_rich Low_complexity Low_complexity 1 44 0 433 305 68 16 chrX 38357666 38357856 -124242074 - MIR SINE MIR -41 221 22 1210 192 77 0 chrX 38357868 38358023 -124241907 - AluJo SINE Alu -22 290 110 342 0 0 0 chrX 38358023 38358061 -124241869 + (TG)n Simple_repeat Simple_repeat 1 38 0 1210 192 77 0 chrX 38358061 38358139 -124241791 - AluJo SINE Alu -202 110 39 421 331 104 19 chrX 38359302 38359647 -124240283 + L2 LINE L2 2718 3082 -190 188 35 35 0 chrX 38359827 38359856 -124240074 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 221 171 0 0 chrX 38361979 38362020 -124237910 + (CCTG)n Simple_repeat Simple_repeat 4 44 0 293 248 248 16 chrX 38362368 38362493 -124237437 - MIR SINE MIR 0 262 109 285 29 0 0 chrX 38362517 38362551 -124237379 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 1230 197 182 3 chrX 38363529 38363864 -124236066 + MSTD LTR MaLR 1 395 -1 448 186 12 23 chrX 38364329 38364415 -124235515 - MER5A DNA MER1_type -95 94 10 695 353 90 21 chrX 38364517 38364894 -124235036 - L2 LINE L2 -1 3271 2869 290 299 0 23 chrX 38365080 38365167 -124234763 - L2 LINE L2 0 3313 3229 802 175 0 0 chrX 38366498 38366624 -124233306 + FLAM_C SINE Alu 1 126 -7 4013 154 33 29 chrX 38367429 38368388 -124231542 - L1MA9 LINE L1 -271 6041 5064 216 0 0 0 chrX 38368388 38368412 -124231518 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4013 154 33 29 chrX 38368412 38368970 -124230960 - L1MA9 LINE L1 -1248 5064 4509 266 146 18 0 chrX 38369152 38369207 -124230723 - L1MC4 LINE L1 -1 8041 7986 2430 210 33 18 chrX 38369219 38370008 -124229922 - L1MC4 LINE L1 -149 7893 6941 301 325 0 0 chrX 38370033 38370153 -124229777 + L1P LINE L1 4901 5020 -1126 667 199 14 0 chrX 38370439 38370585 -124229345 + MLT1A2 LTR MaLR 219 366 -8 24 0 0 0 chrX 38370642 38370666 -124229264 + AT_rich Low_complexity Low_complexity 1 24 0 893 120 0 54 chrX 38371134 38371318 -124228612 + L1MA7 LINE L1 6116 6289 -2 737 263 59 27 chrX 38371500 38371873 -124228057 + L1MC5 LINE L1 7529 7913 -48 230 0 0 32 chrX 38372920 38372951 -124226979 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 349 93 0 0 chrX 38373083 38373137 -124226793 - MADE1 DNA Mariner 0 80 27 2190 131 0 0 chrX 38373143 38373456 -124226474 + AluSq SINE Alu 1 313 0 826 144 32 27 chrX 38373665 38373853 -124226077 + MER53 DNA DNA 1 189 0 212 341 87 48 chrX 38373992 38374118 -124225812 + L2 LINE L2 3142 3272 0 1921 128 32 4 chrX 38374605 38374886 -124225044 - AluSx SINE Alu -17 295 7 1063 148 14 56 chrX 38375044 38375146 -124224784 - MER20 DNA MER1_type -12 207 117 1214 223 37 72 chrX 38375146 38375522 -124224408 + MLT1A1 LTR MaLR 3 365 0 1063 148 14 56 chrX 38375522 38375635 -124224295 - MER20 DNA MER1_type -102 117 1 2108 112 0 3 chrX 38376425 38376712 -124223218 + AluSx SINE Alu 1 286 -26 26 0 0 0 chrX 38376722 38376748 -124223182 + AT_rich Low_complexity Low_complexity 1 26 0 1379 169 14 21 chrX 38376933 38377212 -124222718 + L1MB5 LINE L1 5898 6174 0 21 36 0 0 chrX 38377269 38377297 -124222633 + AT_rich Low_complexity Low_complexity 1 28 0 241 351 96 29 chrX 38377300 38377645 -124222285 + L1MEd LINE L1 88 455 -5664 252 0 0 0 chrX 38379112 38379140 -124220790 + (CA)n Simple_repeat Simple_repeat 2 29 0 455 300 152 19 chrX 38379277 38379600 -124220330 - LTR16C LTR ERVL -3 488 123 189 0 0 0 chrX 38379778 38379799 -124220131 + (T)n Simple_repeat Simple_repeat 1 21 0 267 293 0 40 chrX 38380501 38380600 -124219330 - LTR67 LTR ERVL -28 529 435 238 161 25 99 chrX 38383295 38383376 -124216554 + GA-rich Low_complexity Low_complexity 3 77 0 251 324 0 18 chrX 38383413 38383524 -124216406 - MLT1I LTR MaLR -300 109 1 289 320 173 33 chrX 38383947 38384097 -124215833 - L2 LINE L2 0 3272 3102 1755 170 31 10 chrX 38384122 38384392 -124215538 + AluJb SINE Alu 1 279 -33 489 17 0 0 chrX 38384392 38384450 -124215480 + (CA)n Simple_repeat Simple_repeat 1 58 0 1755 170 31 10 chrX 38384450 38384468 -124215462 + AluJb SINE Alu 279 295 -17 2179 100 0 0 chrX 38385313 38385621 -124214309 + AluSc SINE Alu 1 308 0 305 323 135 65 chrX 38386154 38386287 -124213643 + L2 LINE L2 2809 2931 -341 627 200 49 27 chrX 38386287 38386472 -124213458 + MER53 DNA DNA 1 189 0 305 323 135 65 chrX 38386472 38386679 -124213251 + L2 LINE L2 2931 3173 -99 1985 168 7 0 chrX 38387051 38387361 -124212569 + AluJb SINE Alu 1 312 0 1766 147 4 0 chrX 38387374 38387633 -124212297 + AluSx SINE Alu 5 264 -48 278 171 0 0 chrX 38387633 38387674 -124212256 + AluJ/FLAM SINE Alu 17 57 -245 249 294 265 10 chrX 38387953 38388055 -124211875 - MIR3 SINE MIR -51 157 30 185 259 154 86 chrX 38388109 38388271 -124211659 - L3b LINE CR1 -163 1420 1248 978 95 0 14 chrX 38389430 38389577 -124210353 - L1PA16 LINE L1 -1 6165 6021 400 218 98 30 chrX 38389793 38389926 -124210004 - MIR SINE MIR -77 185 44 * 430 311 20 20 chrX 38389925 38390073 -124209857 + MIR SINE MIR 63 210 -52 * 565 330 165 17 chrX 38390051 38390457 -124209473 - L3 LINE CR1 -935 642 177 2059 144 0 3 chrX 38390532 38390844 -124209086 + AluSx SINE Alu 1 311 -1 2603 145 21 5 chrX 38390893 38391314 -124208616 + MSTA LTR MaLR 1 428 0 336 290 109 7 chrX 38391391 38391529 -124208401 - MIR SINE MIR -1 261 110 195 114 0 0 chrX 38391553 38391588 -124208342 + (A)n Simple_repeat Simple_repeat 1 35 0 25 90 0 0 chrX 38392077 38392144 -124207786 + AT_rich Low_complexity Low_complexity 1 67 0 32 0 0 0 chrX 38392317 38392349 -124207581 + AT_rich Low_complexity Low_complexity 1 32 0 2329 127 0 6 chrX 38392375 38392736 -124207194 - L1PA13 LINE L1 0 6163 5805 1986 134 3 27 chrX 38394307 38394606 -124205324 - AluSx SINE Alu -20 292 1 562 125 29 29 chrX 38394700 38394804 -124205126 + MLT1D LTR MaLR 402 505 0 380 273 34 34 chrX 38395361 38395599 -124204331 - L1MEc LINE L1 -4833 1709 1472 728 152 179 0 chrX 38395603 38395746 -124204184 - MER7A DNA MER2_type -3 334 166 1293 129 51 14 chrX 38395746 38395963 -124203967 - MER30B DNA MER1_type 0 230 6 295 48 24 0 chrX 38395974 38396016 -124203914 - MER30B DNA MER1_type -135 55 13 * 1190 110 0 0 chrX 38396014 38396187 -124203743 - MER7A DNA MER2_type -173 173 3 3028 259 67 9 chrX 38396189 38397201 -124202729 - L1MEc LINE L1 -5219 1606 536 21 0 0 0 chrX 38397756 38397777 -124202153 + AT_rich Low_complexity Low_complexity 1 21 0 566 287 146 25 chrX 38397852 38398517 -124201413 + L1ME4a LINE L1 5373 6119 -2 235 342 56 82 chrX 38399455 38399651 -124200279 - MIR3 SINE MIR -1 207 17 195 162 0 0 chrX 38399667 38399704 -124200226 + GA-rich Low_complexity Low_complexity 3 39 0 2145 178 0 5 chrX 38399803 38400185 -124199745 + MLT1B LTR MaLR 1 380 -10 24 0 0 0 chrX 38401098 38401122 -124198808 + AT_rich Low_complexity Low_complexity 1 24 0 204 190 17 17 chrX 38401160 38401218 -124198712 + (TTA)n Simple_repeat Simple_repeat 1 58 0 376 160 7 43 chrX 38401232 38401522 -124198408 + (TA)n Simple_repeat Simple_repeat 1 279 0 30925 94 26 10 chrX 38401545 38407133 -124192797 - L1PA7 LINE L1 -15 6454 742 819 177 0 34 chrX 38407280 38407427 -124192503 - FLAM_C SINE Alu 0 143 2 1376 241 138 0 chrX 38408300 38408648 -124191282 - MSTD LTR MaLR 0 396 1 268 171 186 57 chrX 38409121 38409191 -124190739 + MSTD LTR MaLR 174 252 -144 * 379 276 39 31 chrX 38409189 38409316 -124190614 - MLT1H LTR MaLR -29 520 393 1129 165 6 6 chrX 38409321 38409503 -124190427 - MER58A DNA MER1_type -1 223 42 244 233 0 0 chrX 38409552 38409595 -124190335 - MLT1H LTR MaLR -195 354 312 335 260 13 0 chrX 38409640 38409717 -124190213 - MLT1H LTR MaLR -392 157 80 598 309 15 10 chrX 38410507 38410711 -124189219 - MIR SINE MIR -17 245 41 1961 144 11 107 chrX 38411260 38411642 -124188288 + Tigger3(Golem) DNA MER2_type 1 3025 -4 284 267 233 0 chrX 38411851 38411941 -124187989 + MIR SINE MIR 20 130 -132 1328 169 6 124 chrX 38412043 38412399 -124187531 + MLT1D LTR MaLR 1 314 -191 1116 175 6 129 chrX 38412397 38412723 -124187207 - MLT1D LTR MaLR -148 357 72 * 301 266 7 58 chrX 38412890 38413044 -124186886 - L2 LINE L2 -158 3155 3010 583 186 86 43 chrX 38413463 38413603 -124186327 + L2 LINE L2 3168 3313 0 1525 215 95 44 chrX 38413969 38414379 -124185551 + MER74A LTR ERVL 1 431 -127 3235 133 36 7 chrX 38414778 38415380 -124184550 + L1M2 LINE L1 5181 5801 -511 2810 193 2 4 chrX 38415364 38415909 -124184021 + L1P LINE L1 4397 4940 -1206 * 1314 129 0 30 chrX 38415911 38416113 -124183817 + AluSg/x SINE Alu 100 295 -17 1011 138 144 0 chrX 38416129 38416296 -124183634 - AluSx SINE Alu -87 225 35 612 147 0 0 chrX 38416296 38416391 -124183539 - L1P LINE L1 -1161 4985 4891 241 298 87 0 chrX 38416536 38416640 -124183290 + L2 LINE L2 2972 3084 -188 815 247 50 0 chrX 38417057 38417276 -124182654 + L1M4 LINE L1 4896 5125 -1021 474 221 71 32 chrX 38417497 38417651 -124182279 + L1MC4 LINE L1 7759 7918 -124 21 0 0 0 chrX 38417690 38417711 -124182219 + AT_rich Low_complexity Low_complexity 1 21 0 526 238 64 23 chrX 38417749 38417921 -124182009 + L1MC4 LINE L1 7853 8031 -11 198 363 32 38 chrX 38417953 38418110 -124181820 - L3 LINE CR1 -210 1367 1212 185 280 243 9 chrX 38419396 38419503 -124180427 + MIR3 SINE MIR 59 190 -18 360 324 0 0 chrX 38419971 38420073 -124179857 + MIR SINE MIR 48 149 -113 1668 160 15 0 chrX 38420093 38420362 -124179568 + AluJo SINE Alu 9 281 -31 186 423 21 10 chrX 38421418 38421515 -124178415 - MIR SINE MIR -78 130 33 1213 179 19 19 chrX 38421709 38421972 -124177958 + MER33 DNA MER1_type 62 324 0 2280 117 3 0 chrX 38422661 38422968 -124176962 - AluSx SINE Alu -4 308 1 888 232 11 76 chrX 38423226 38423489 -124176441 - MIR SINE MIR 0 262 17 209 292 0 0 chrX 38423683 38423731 -124176199 + MIR3 SINE MIR 133 180 -28 291 265 69 0 chrX 38424219 38424321 -124175609 + MIR SINE MIR 130 238 -24 359 83 17 0 chrX 38424352 38424412 -124175518 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 569 165 82 0 chrX 38424415 38424512 -124175418 - FLAM_A SINE Alu -37 105 1 220 371 76 0 chrX 38425038 38425143 -124174787 + L2 LINE L2 3133 3245 -27 646 289 61 2 chrX 38425293 38425570 -124174360 - LTR16A LTR ERVL 0 450 92 298 374 49 0 chrX 38427010 38427173 -124172757 + MIR3 SINE MIR 36 206 -2 504 308 8 0 chrX 38429788 38429908 -124170022 + MER5B DNA MER1_type 58 178 0 195 42 0 0 chrX 38430073 38430097 -124169833 + (A)n Simple_repeat Simple_repeat 1 24 0 1760 158 7 11 chrX 38430746 38431054 -124168876 + AluJo SINE Alu 1 307 0 443 369 45 29 chrX 38431158 38431467 -124168463 + L3 LINE CR1 64 377 -1200 1195 168 0 0 chrX 38431597 38431770 -124168160 - FAM SINE Alu -2 173 1 312 316 28 42 chrX 38432416 38432631 -124167299 + L2 LINE L2 2764 2975 -339 288 0 0 0 chrX 38432742 38432774 -124167156 + (CA)n Simple_repeat Simple_repeat 2 33 0 506 255 153 0 chrX 38432963 38433120 -124166810 - MER5A DNA MER1_type 0 189 9 642 251 29 29 chrX 38433208 38433415 -124166515 - MIR SINE MIR -49 213 7 354 241 9 71 chrX 38434075 38434187 -124165743 + L2 LINE L2 3197 3301 -12 435 317 96 29 chrX 38434899 38435107 -124164823 - MIR SINE MIR -14 248 27 351 268 140 30 chrX 38435645 38435809 -124164121 + MIR SINE MIR 63 244 -18 546 324 0 28 chrX 38439792 38439971 -124159959 + MIR3 SINE MIR 17 190 -18 849 242 88 48 chrX 38440644 38441102 -124158828 + L1MC4a LINE L1 5351 5813 -308 30 27 0 0 chrX 38441376 38441413 -124158517 + AT_rich Low_complexity Low_complexity 1 37 0 226 301 54 21 chrX 38442806 38442899 -124157031 - L2 LINE L2 -9 3304 3209 22 35 0 0 chrX 38443099 38443128 -124156802 + AT_rich Low_complexity Low_complexity 1 29 0 540 254 28 7 chrX 38444325 38444467 -124155463 + MIR3 SINE MIR 58 202 -6 1738 181 0 13 chrX 38444747 38445078 -124154852 + AluJb SINE Alu 1 327 0 232 45 0 68 chrX 38448421 38448465 -124151465 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 307 302 78 35 chrX 38450764 38450880 -124149050 + L2 LINE L2 3151 3271 -1 25 31 0 0 chrX 38451300 38451332 -124148598 + AT_rich Low_complexity Low_complexity 1 32 0 447 68 0 0 chrX 38453076 38453135 -124146795 + (GA)n Simple_repeat Simple_repeat 2 60 0 401 181 7 138 chrX 38455741 38455879 -124144051 + LTR67 LTR ERVL 431 550 -7 612 297 31 19 chrX 38456206 38456462 -124143468 - MIR SINE MIR -2 260 2 287 309 10 10 chrX 38457104 38457201 -124142729 - L2 LINE L2 -12 3301 3205 490 236 121 25 chrX 38457234 38457454 -124142476 - MLT1L LTR MaLR -27 565 311 937 303 177 29 chrX 38457519 38458106 -124141824 - L2 LINE L2 -616 2698 2025 432 278 17 9 chrX 38458207 38458322 -124141608 + MER5B DNA MER1_type 24 139 -39 6537 136 8 22 chrX 38458324 38459576 -124140354 + L1MC1 LINE L1 5097 6331 -2 186 43 0 0 chrX 38459576 38459599 -124140331 + (CA)n Simple_repeat Simple_repeat 2 24 0 2889 9 0 9 chrX 38459822 38460143 -124139787 - AluYb8 SINE Alu 0 318 1 200 324 44 0 chrX 38460735 38460803 -124139127 + L2 LINE L2 1953 2023 -1291 268 333 39 8 chrX 38461097 38461226 -124138704 + MIR SINE MIR 60 192 -70 5205 121 45 26 chrX 38461982 38462347 -124137583 + L1PA16 LINE L1 5111 5468 -698 2298 82 0 26 chrX 38462347 38462650 -124137280 + AluSp SINE Alu 1 295 -18 5205 121 45 26 chrX 38462650 38463314 -124136616 + L1PA16 LINE L1 5468 6157 -9 1474 156 33 16 chrX 38463349 38463593 -124136337 + AluJo SINE Alu 40 287 -25 1198 267 220 29 chrX 38464550 38465387 -124134543 - L2 LINE L2 -3 3310 2339 1100 284 97 26 chrX 38466033 38466487 -124133443 - L2 LINE L2 -725 2589 2104 22 0 0 0 chrX 38466798 38466820 -124133110 + AT_rich Low_complexity Low_complexity 1 22 0 5360 42 8 0 chrX 38467338 38467988 -124131942 + L1PA5 LINE L1 5495 6149 -5 21 36 0 0 chrX 38467994 38468022 -124131908 + AT_rich Low_complexity Low_complexity 1 28 0 328 267 47 63 chrX 38468314 38468505 -124131425 + MLT1J2 LTR MaLR 263 450 0 968 234 172 25 chrX 38468642 38468967 -124130963 - MLT1G3 LTR MaLR -4 526 154 2879 177 42 31 chrX 38469396 38469890 -124130040 + MLT2B3 LTR ERVL 2 504 -50 213 39 0 0 chrX 38469890 38469916 -124130014 + (TC)n Simple_repeat Simple_repeat 2 27 0 2879 177 42 31 chrX 38469916 38469968 -124129962 + MLT2B3 LTR ERVL 504 554 0 523 286 33 24 chrX 38470103 38470316 -124129614 + LTR16A1 LTR ERVL 157 371 -86 806 169 114 45 chrX 38470317 38470518 -124129412 - AluJb SINE Alu -11 301 87 289 288 68 46 chrX 38470915 38471266 -124128664 + L1ME4a LINE L1 3595 3953 -2193 657 320 76 25 chrX 38471592 38472026 -124127904 + L1ME4a LINE L1 4378 4833 -1313 22 0 0 0 chrX 38472074 38472096 -124127834 + AT_rich Low_complexity Low_complexity 1 22 0 2879 177 42 31 chrX 38472205 38472257 -124127673 - MLT2B3 LTR ERVL 0 554 504 231 36 0 0 chrX 38472257 38472285 -124127645 + (GA)n Simple_repeat Simple_repeat 2 29 0 2879 177 42 31 chrX 38472285 38472779 -124127151 - MLT2B3 LTR ERVL -50 504 2 225 0 0 0 chrX 38473195 38473220 -124126710 + (TC)n Simple_repeat Simple_repeat 1 25 0 933 215 188 27 chrX 38473230 38473528 -124126402 + MLT1G3 LTR MaLR 170 515 -15 * 1314 181 26 26 chrX 38473524 38473790 -124126140 - MSTD LTR MaLR -128 268 3 2453 78 0 3 chrX 38473820 38474128 -124125802 + AluY SINE Alu 1 307 -4 21 0 0 0 chrX 38474301 38474322 -124125608 + AT_rich Low_complexity Low_complexity 1 21 0 493 282 81 35 chrX 38474390 38474759 -124125171 + L1ME4a LINE L1 5391 5776 -345 6101 36 0 1 chrX 38474847 38475605 -124124325 - L1PA5 LINE L1 -6 6148 5392 327 223 165 33 chrX 38475636 38475909 -124124021 + L1ME4a LINE L1 5808 6116 -5 358 200 15 0 chrX 38476429 38476494 -124123436 - L2 LINE L2 0 3313 3248 2193 131 78 0 chrX 38476561 38476921 -124123009 + MLT1B LTR MaLR 3 390 0 1851 133 29 48 chrX 38477280 38477656 -124122274 - THE1C LTR MaLR 0 375 7 31 0 0 0 chrX 38478015 38478046 -124121884 + AT_rich Low_complexity Low_complexity 1 31 0 256 336 44 0 chrX 38479129 38479242 -124120688 + L2 LINE L2 1918 2035 -1279 2327 72 3 0 chrX 38480226 38480519 -124119411 - AluY SINE Alu -17 294 1 1045 123 0 0 chrX 38481597 38481751 -124118179 + L1MC1 LINE L1 6180 6333 0 1275 165 27 0 chrX 38481792 38482016 -124117914 + L1MB5 LINE L1 5945 6174 0 2085 161 129 19 chrX 38482194 38482622 -124117308 + MLT2B1 LTR ERVL 1 485 -35 315 0 0 0 chrX 38482622 38482657 -124117273 + (TG)n Simple_repeat Simple_repeat 2 36 0 2085 161 129 19 chrX 38482657 38482693 -124117237 + MLT2B1 LTR ERVL 485 516 -4 237 33 0 0 chrX 38484069 38484099 -124115831 + (CA)n Simple_repeat Simple_repeat 1 30 0 1064 212 135 50 chrX 38484760 38485161 -124114769 - MLT1D LTR MaLR -2 503 100 1392 194 83 17 chrX 38485161 38485521 -124114409 - MER45B DNA AcHobo 0 1040 657 371 167 15 0 chrX 38485520 38485586 -124114344 - MLT1D LTR MaLR -427 78 12 * 232 296 0 28 chrX 38485659 38485730 -124114200 - MLT1H1 LTR MaLR -299 256 188 231 214 36 48 chrX 38485829 38485913 -124114017 - MLT1H1 LTR MaLR -459 83 1 5535 160 19 35 chrX 38486018 38487169 -124112761 + L1MA7 LINE L1 4195 5363 -928 1907 159 91 3 chrX 38487169 38487533 -124112397 + MSTD LTR MaLR 1 396 0 5535 160 19 35 chrX 38487533 38488366 -124111564 + L1MA7 LINE L1 5363 6159 -132 424 70 12 58 chrX 38488366 38488440 -124111490 + L1PB2 LINE L1 6065 6146 -5 5535 160 19 35 chrX 38488440 38488452 -124111478 + L1MA7 LINE L1 6159 6170 -121 2255 102 0 16 chrX 38488457 38488772 -124111158 + AluSg SINE Alu 1 310 0 735 112 0 16 chrX 38488933 38489058 -124110872 + L1MA7 LINE L1 6165 6287 -4 6139 95 49 2 chrX 38489088 38490251 -124109679 - L1PA13 LINE L1 0 6163 4980 489 258 213 13 chrX 38490328 38490553 -124109377 - MLT1J LTR MaLR -241 270 1 1906 179 21 74 chrX 38491011 38491536 -124108394 - MLT1D LTR MaLR -8 497 1 696 144 0 0 chrX 38493527 38493652 -124106278 + L1P LINE L1 4728 4852 -1294 1686 147 68 49 chrX 38493674 38494042 -124105888 + THE1C LTR MaLR 1 375 0 344 343 66 15 chrX 38494228 38494365 -124105565 - L2 LINE L2 -610 2704 2561 503 291 124 12 chrX 38494734 38494992 -124104938 + LTR16A1 LTR ERVL 171 457 0 363 298 146 22 chrX 38495212 38495390 -124104540 + MIR SINE MIR 63 262 0 2529 50 3 3 chrX 38495409 38495709 -124104221 + AluY SINE Alu 1 300 -11 5310 188 27 4 chrX 38498050 38499063 -124100867 - MER45B DNA AcHobo -4 1036 1 3234 105 58 12 chrX 38499551 38500067 -124099863 - L1MB2 LINE L1 -3 6168 5629 504 319 12 24 chrX 38500592 38500758 -124099172 - MIR3 SINE MIR 0 208 45 651 290 40 10 chrX 38502328 38502528 -124097402 - MIR SINE MIR -40 222 17 562 264 162 8 chrX 38503907 38504104 -124095826 + MIR SINE MIR 37 262 0 186 303 0 53 chrX 38504390 38504466 -124095464 - L2 LINE L2 -182 3090 3019 33 25 0 0 chrX 38504872 38504912 -124095018 + AT_rich Low_complexity Low_complexity 1 40 0 528 312 54 65 chrX 38505060 38505429 -124094501 + MLT1K LTR MaLR 14 378 -210 365 326 57 21 chrX 38505936 38506129 -124093801 + MIR SINE MIR 51 250 -12 273 57 0 0 chrX 38506133 38506168 -124093762 + (CAT)n Simple_repeat Simple_repeat 1 35 0 2232 60 0 0 chrX 38506350 38506617 -124093313 - AluY SINE Alu -1 310 44 2279 175 37 3 chrX 38506716 38507093 -124092837 + MLT1B LTR MaLR 1 390 0 2327 85 0 25 chrX 38508422 38508740 -124091190 - AluSg SINE Alu 0 310 1 217 225 0 0 chrX 38508848 38508888 -124091042 + (CAG)n Simple_repeat Simple_repeat 3 42 0 285 29 0 0 chrX 38511407 38511441 -124088489 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1097 137 69 0 chrX 38511679 38511854 -124088076 + MER5A DNA MER1_type 3 189 0 198 370 0 19 chrX 38513012 38513066 -124086864 + L2 LINE L2 3129 3181 -91 1183 213 127 94 chrX 38513435 38514009 -124085921 - MLT1G1 LTR MaLR 0 595 3 207 0 0 0 chrX 38514731 38514754 -124085176 + (A)n Simple_repeat Simple_repeat 1 23 0 1854 189 38 30 chrX 38516487 38516857 -124083073 + MLT1A2 LTR MaLR 2 374 0 333 0 0 0 chrX 38517790 38517827 -124082103 + (CA)n Simple_repeat Simple_repeat 2 38 0 884 289 101 37 chrX 38519160 38519645 -124080285 + LTR33 LTR ERVL 6 521 0 221 341 101 16 chrX 38520756 38520885 -124079045 + MIR3 SINE MIR 44 183 -25 712 261 32 74 chrX 38520973 38521361 -124078569 - MLT1H LTR MaLR -32 523 52 1914 244 53 41 chrX 38523205 38523718 -124076212 - MLT1E LTR MaLR 0 593 75 642 292 152 15 chrX 38523816 38524152 -124075778 - MARNA DNA Mariner -41 545 164 3557 72 5 0 chrX 38524898 38525343 -124074587 + MER41A LTR ERV1 1 447 -107 6533 130 4 5 chrX 38525355 38526779 -124073151 - L1PB1 LINE L1 -3 6148 4726 714 75 0 0 chrX 38526779 38526872 -124073058 + MER41B LTR ERV1 543 635 0 293 269 123 70 chrX 38527167 38527567 -124072363 + MLT1G LTR MaLR 119 590 0 1199 243 127 26 chrX 38527943 38528400 -124071530 + LTR33 LTR ERVL 3 505 -16 1702 153 21 28 chrX 38528582 38528864 -124071066 + AluJb SINE Alu 1 280 -32 450 154 0 0 chrX 38529766 38529844 -124070086 + GA-rich Low_complexity Low_complexity 3 80 0 2050 100 0 4 chrX 38530038 38530318 -124069612 - AluY SINE Alu -6 305 27 22 0 0 0 chrX 38530394 38530416 -124069514 + AT_rich Low_complexity Low_complexity 1 22 0 15381 81 21 14 chrX 38530695 38533422 -124066508 - L1PA7 LINE L1 -233 5921 3173 1839 64 0 0 chrX 38533422 38533639 -124066291 + L1PA7 LINE L1 5931 6150 -4 1111 158 23 56 chrX 38533685 38533900 -124066030 + AluJo SINE Alu 85 292 -20 884 218 32 11 chrX 38535202 38535390 -124064540 + MER63A DNA MER1_type 1 192 -18 591 324 107 28 chrX 38535490 38535808 -124064122 + L2 LINE L2 2925 3267 -5 476 373 22 4 chrX 38536003 38536231 -124063699 + MIR SINE MIR 29 260 -2 202 299 10 31 chrX 38536531 38536628 -124063302 + CT-rich Low_complexity Low_complexity 3 97 0 745 299 37 0 chrX 38537877 38538064 -124061866 + MER91A DNA MER1_type 2 195 -1 2768 99 23 3 chrX 38538107 38538491 -124061439 + L1PA11 LINE L1 5783 6174 0 22 0 0 0 chrX 38539597 38539619 -124060311 + AT_rich Low_complexity Low_complexity 1 22 0 3533 175 12 3 chrX 38539620 38540221 -124059709 - L1MB2 LINE L1 -9 6162 5557 1994 113 11 11 chrX 38540248 38540532 -124059398 - AluSx SINE Alu -28 284 1 255 291 92 7 chrX 38540644 38540785 -124059145 - L1MC5 LINE L1 -37 7924 7772 26 0 0 0 chrX 38540834 38540860 -124059070 + AT_rich Low_complexity Low_complexity 1 26 0 35 54 0 0 chrX 38544945 38545001 -124054929 + AT_rich Low_complexity Low_complexity 1 56 0 5449 50 2 2 chrX 38545053 38545676 -124054254 - L1PA6 LINE L1 -5 6149 5527 235 250 95 69 chrX 38546014 38546130 -124053800 + L2 LINE L2 3194 3312 -1 323 222 0 93 chrX 38546167 38546275 -124053655 + MIR SINE MIR 139 236 -26 544 314 49 12 chrX 38546470 38546675 -124053255 + MIR SINE MIR 5 222 -40 2477 174 40 26 chrX 38546675 38546916 -124053014 - MSTB LTR MaLR 0 426 174 2377 74 0 0 chrX 38546916 38547241 -124052689 + AluY SINE Alu 1 325 0 2477 174 40 26 chrX 38547241 38547418 -124052512 - MSTB LTR MaLR -252 174 1 544 314 49 12 chrX 38547418 38547457 -124052473 + MIR SINE MIR 222 258 -4 253 304 64 16 chrX 38547846 38547971 -124051959 - MLT1H LTR MaLR -396 153 23 441 257 54 124 chrX 38547976 38548217 -124051713 + L2 LINE L2 3037 3260 -12 623 165 0 0 chrX 38549608 38549709 -124050221 - MER5A DNA MER1_type -84 105 5 2564 131 116 0 chrX 38550092 38550496 -124049434 - LTR47A LTR ERVL -1 451 1 26 0 0 0 chrX 38550795 38550821 -124049109 + AT_rich Low_complexity Low_complexity 1 26 0 221 129 0 81 chrX 38551719 38551781 -124048149 + (TGGGGG)n Simple_repeat Simple_repeat 4 60 0 284 336 44 0 chrX 38552275 38552388 -124047542 - L2 LINE L2 -1 3271 3154 830 193 122 54 chrX 38553291 38553313 -124046617 + Charlie7 DNA MER1_type 1597 1616 -996 1072 99 17 0 chrX 38553313 38553485 -124046445 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2258 53 0 18 chrX 38553487 38553769 -124046161 - AluSc SINE Alu -32 277 1 830 193 122 54 chrX 38553769 38554038 -124045892 + Charlie7 DNA MER1_type 1616 1911 -701 3053 103 14 21 chrX 38554038 38554473 -124045457 + L1PA16 LINE L1 5735 6166 0 1161 220 129 46 chrX 38555359 38555544 -124044386 + Charlie7 DNA MER1_type 1898 2066 -546 2283 152 103 77 chrX 38555544 38556051 -124043879 + MLT2B1 LTR ERVL 1 520 0 1161 220 129 46 chrX 38556051 38556361 -124043569 + Charlie7 DNA MER1_type 2066 2434 -178 6915 182 13 11 chrX 38556370 38558852 -124041078 + L1MC1 LINE L1 3831 6316 -17 355 201 121 27 chrX 38559002 38559134 -124040796 + Charlie7 DNA MER1_type 2384 2533 -79 363 44 0 0 chrX 38559134 38559179 -124040751 + (TG)n Simple_repeat Simple_repeat 2 46 0 355 201 121 27 chrX 38559179 38559195 -124040735 + Charlie7 DNA MER1_type 2533 2546 -66 2243 94 0 0 chrX 38559200 38559486 -124040444 - AluSx SINE Alu -26 286 1 570 345 48 33 chrX 38559561 38559894 -124040036 - LTR16C LTR ERVL -9 482 145 2639 27 0 0 chrX 38560189 38560485 -124039445 - AluY SINE Alu -15 296 1 2173 92 17 3 chrX 38560485 38560779 -124039151 - L1PA15 LINE L1 0 6165 5868 421 265 73 64 chrX 38560796 38561020 -124038910 + MIR SINE MIR 29 249 -13 2543 200 80 29 chrX 38561356 38562085 -124037845 - L1MC5 LINE L1 -36 7925 7160 1706 166 8 0 chrX 38562853 38563112 -124036818 + Tigger7 DNA MER2_type 4 264 -469 628 152 0 10 chrX 38563118 38563217 -124036713 + Tigger7 DNA MER2_type 2394 2491 0 723 211 103 16 chrX 38563553 38563747 -124036183 - MIR SINE MIR -44 218 8 196 270 48 0 chrX 38564595 38564658 -124035272 - L3b LINE CR1 -166 1417 1352 1579 182 44 32 chrX 38565228 38565260 -124034670 - MLT2B1 LTR ERVL -6 514 484 602 88 0 11 chrX 38565260 38565351 -124034579 + (TG)n Simple_repeat Simple_repeat 2 91 0 1579 182 44 32 chrX 38565351 38565780 -124034150 - MLT2B1 LTR ERVL -36 484 1 1362 226 26 26 chrX 38566226 38566566 -124033364 + L1ME2 LINE L1 5824 6163 -1 255 322 0 11 chrX 38566579 38566669 -124033261 + MIR SINE MIR 169 257 -5 5279 43 0 2 chrX 38567251 38567851 -124032079 - L1PA5 LINE L1 -2 6152 5554 497 219 0 31 chrX 38567964 38568060 -124031870 - MER5A DNA MER1_type -83 106 14 225 154 0 0 chrX 38568190 38568229 -124031701 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chrX 38568737 38568762 -124031168 + (GGA)n Simple_repeat Simple_repeat 1 25 0 394 306 43 48 chrX 38568947 38569133 -124030797 + MIR SINE MIR 7 191 -71 1492 147 0 14 chrX 38570055 38570273 -124029657 - AluJb SINE Alu -17 295 81 1183 221 32 98 chrX 38570274 38570745 -124029185 - HAL1 LINE L1 -1330 1177 738 536 178 11 0 chrX 38571011 38571101 -124028829 - MER5A DNA MER1_type -2 187 97 186 71 0 0 chrX 38571301 38571329 -124028601 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 1960 101 0 89 chrX 38571329 38571645 -124028285 - AluSq SINE Alu -25 288 1 1025 158 44 6 chrX 38571711 38571894 -124028036 - L1PA16 LINE L1 -14 6152 5963 915 239 41 21 chrX 38571938 38572279 -124027651 + MLT1G LTR MaLR 45 437 -93 281 343 19 9 chrX 38572385 38572493 -124027437 + L2 LINE L2 3180 3288 -25 840 276 46 13 chrX 38572618 38572857 -124027073 + MIR SINE MIR 13 259 -3 344 229 138 28 chrX 38573134 38573243 -124026687 + MER5A DNA MER1_type 35 155 -34 211 195 24 0 chrX 38573882 38573923 -124026007 + CT-rich Low_complexity Low_complexity 4 45 0 191 36 36 0 chrX 38573923 38573951 -124025979 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 246 289 26 0 chrX 38573952 38574028 -124025902 - L2 LINE L2 -2 3270 3193 1174 115 0 0 chrX 38574384 38574540 -124025390 - AluSg/x SINE Alu -10 302 147 1039 173 20 25 chrX 38574823 38575020 -124024910 - MER20 DNA MER1_type -1 218 23 379 267 7 52 chrX 38575044 38575179 -124024751 - MER5B DNA MER1_type -14 164 36 2170 246 35 9 chrX 38575777 38576321 -124023609 + L1ME3A LINE L1 5610 6167 -3 27 0 0 0 chrX 38577443 38577470 -124022460 + AT_rich Low_complexity Low_complexity 1 27 0 181 352 84 0 chrX 38577470 38577541 -124022389 - L2 LINE L2 -50 3222 3146 234 158 0 0 chrX 38577545 38577583 -124022347 - MLT1G1 LTR MaLR -7 583 546 1721 183 45 66 chrX 38577614 38577992 -124021938 - MLT1A2 LTR MaLR -1 373 4 2337 128 12 52 chrX 38578005 38578410 -124021520 - MLT1B LTR MaLR -1 389 1 601 194 19 0 chrX 38578411 38578514 -124021416 + MER81 DNA DNA 10 114 0 978 276 60 82 chrX 38578521 38579042 -124020888 - MLT1G1 LTR MaLR -66 529 21 2506 126 34 3 chrX 38579049 38579430 -124020500 - L1MB2 LINE L1 -3 6168 5776 199 250 47 31 chrX 38579614 38579678 -124020252 - L2 LINE L2 -346 2968 2904 278 348 71 0 chrX 38579686 38579798 -124020132 - MER91C DNA MER1_type -20 120 1 618 285 128 25 chrX 38580175 38580625 -124019305 - L2 LINE L2 -104 3209 2720 257 279 29 29 chrX 38581062 38581166 -124018764 + LTR16C LTR ERVL 328 431 -60 883 313 50 18 chrX 38581216 38581555 -124018375 - L2 LINE L2 -591 2723 2374 182 234 0 21 chrX 38581558 38581605 -124018325 - L2 LINE L2 0 3313 3268 539 259 65 99 chrX 38581614 38581968 -124017962 + MER34 LTR ERV1 25 356 -186 2347 82 10 0 chrX 38581968 38582261 -124017669 + AluSc SINE Alu 1 296 -13 539 259 65 99 chrX 38582261 38582442 -124017488 + MER34 LTR ERV1 356 542 0 197 286 143 0 chrX 38582592 38582683 -124017247 - L2 LINE L2 -215 3057 2954 226 324 50 58 chrX 38582905 38583146 -124016784 + L2 LINE L2 2927 3165 -107 209 108 40 122 chrX 38583916 38583990 -124015940 + A-rich Low_complexity Low_complexity 3 70 0 225 143 82 0 chrX 38584052 38584101 -124015829 + L1MC4 LINE L1 6653 6705 -1337 385 299 133 29 chrX 38584987 38585228 -124014702 + L3b LINE CR1 1165 1430 -153 244 243 252 0 chrX 38585397 38585504 -124014426 + MIR SINE MIR 17 150 -112 * 809 241 47 105 chrX 38585499 38585841 -124014089 - L2 LINE L2 -13 3300 2991 1876 183 61 44 chrX 38585841 38586300 -124013630 + MLT1C LTR MaLR 1 467 0 809 241 47 105 chrX 38586300 38586425 -124013505 - L2 LINE L2 -322 2991 2860 302 320 0 0 chrX 38586427 38586505 -124013425 - LTR16A LTR ERVL -313 137 60 2010 148 119 18 chrX 38586536 38586922 -124013008 + MSTA LTR MaLR 4 428 0 1179 279 91 8 chrX 38586957 38587340 -124012590 - L2 LINE L2 -668 2646 2232 3357 211 60 20 chrX 38587345 38587604 -124012326 - L1MC4 LINE L1 -743 5797 5550 2951 90 0 6 chrX 38587604 38587970 -124011960 - THE1B LTR MaLR 0 364 1 3357 211 60 20 chrX 38587970 38588904 -124011026 - L1MC4 LINE L1 -990 5550 5325 2071 138 43 54 chrX 38588904 38589273 -124010657 - MLT1A1 LTR MaLR 0 365 1 3357 211 60 20 chrX 38589273 38589322 -124010608 - L1MC4 LINE L1 -1215 5325 5279 1572 219 56 57 chrX 38589346 38589886 -124010044 - L1MC4 LINE L1 -5063 1467 929 374 279 48 34 chrX 38589964 38590197 -124009733 - L1MC4 LINE L1 -5585 945 703 345 359 25 12 chrX 38590598 38590812 -124009118 - L1MC4 LINE L1 -5904 626 34 866 224 142 12 chrX 38590898 38591144 -124008786 - L2 LINE L2 -1118 2196 1919 725 275 16 5 chrX 38591447 38591636 -124008294 + MIR SINE MIR 24 214 -48 279 299 16 118 chrX 38592141 38592328 -124007602 + MIR3 SINE MIR 17 184 -24 275 319 8 42 chrX 38592335 38592454 -124007476 - L2 LINE L2 -3 3269 3155 24 0 0 0 chrX 38592609 38592633 -124007297 + AT_rich Low_complexity Low_complexity 1 24 0 291 263 140 9 chrX 38594548 38594662 -124005268 + MIR3 SINE MIR 48 176 -32 1038 182 16 5 chrX 38596624 38596811 -124003119 - MER5A DNA MER1_type 0 189 1 1577 259 71 17 chrX 38596992 38597455 -124002475 - LTR16C LTR ERVL -3 488 1 884 158 0 8 chrX 38599418 38599545 -124000385 + FLAM_A SINE Alu 2 127 -6 21 0 0 0 chrX 38599545 38599566 -124000364 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 38599598 38599620 -124000310 + AT_rich Low_complexity Low_complexity 1 22 0 1052 167 10 56 chrX 38600184 38600382 -123999548 + MER5A DNA MER1_type 1 189 0 194 259 0 37 chrX 38600675 38600729 -123999201 + L2 LINE L2 3209 3260 -12 1588 180 0 30 chrX 38600791 38601116 -123998814 + AluJo SINE Alu 1 316 0 517 265 144 0 chrX 38601199 38601356 -123998574 - MER5A DNA MER1_type -3 186 4 237 244 343 50 chrX 38601364 38601565 -123998365 + L3 LINE CR1 1140 1399 -178 918 281 89 58 chrX 38601776 38602504 -123997426 - L1ME4a LINE L1 -56 6065 5310 2024 136 0 13 chrX 38602729 38603039 -123996891 - AluJb SINE Alu -6 306 1 886 207 18 0 chrX 38603177 38603341 -123996589 - FRAM SINE Alu -9 167 1 431 172 78 99 chrX 38603360 38603435 -123996495 - Charlie7 DNA MER1_type -191 2421 2346 1453 31 0 0 chrX 38603435 38603596 -123996334 - L1PA3 LINE L1 0 6155 5995 431 172 78 99 chrX 38603596 38603712 -123996218 - Charlie7 DNA MER1_type -266 2346 2234 1243 234 112 50 chrX 38603723 38604322 -123995608 - L1MC4 LINE L1 -1 8041 7406 2451 93 0 0 chrX 38604344 38604657 -123995273 + AluSp SINE Alu 1 313 0 3667 206 70 10 chrX 38604664 38605649 -123994281 - L1ME1 LINE L1 -4 6162 5112 386 159 156 0 chrX 38605633 38605775 -123994155 - L1MEc LINE L1 -5259 1137 953 * 242 317 126 6 chrX 38606147 38606497 -123993433 - L1ME1 LINE L1 -2034 4112 3721 524 273 62 8 chrX 38606593 38606721 -123993209 + MIR SINE MIR 7 141 -121 21 57 0 0 chrX 38606817 38606852 -123993078 + AT_rich Low_complexity Low_complexity 1 35 0 2303 85 3 19 chrX 38606895 38607211 -123992719 - AluSq SINE Alu -2 311 1 1932 207 131 9 chrX 38607413 38607963 -123991967 - L1ME1 LINE L1 -197 5969 5353 1232 224 88 5 chrX 38607959 38608334 -123991596 - L1ME1 LINE L1 -2017 4129 3724 * 557 169 45 11 chrX 38608667 38608824 -123991106 + L1MC4 LINE L1 7892 7995 0 2405 109 0 0 chrX 38608849 38609160 -123990770 + AluSx SINE Alu 1 311 -1 911 204 0 0 chrX 38609161 38609362 -123990568 - L1ME1 LINE L1 -2415 3731 3531 503 172 35 0 chrX 38609368 38609484 -123990446 - L1M4 LINE L1 -1471 4675 4556 2651 162 52 16 chrX 38609550 38610094 -123989836 - L1MD1 LINE L1 0 6311 5749 2383 205 94 9 chrX 38610095 38611150 -123988780 - L1MD1 LINE L1 -598 5713 4593 2113 171 51 2 chrX 38611165 38611579 -123988351 - L1MB5 LINE L1 -9 6165 5732 3885 258 59 31 chrX 38611616 38611712 -123988218 - L1MD1 LINE L1 -4754 1642 1550 2611 27 10 0 chrX 38611712 38612005 -123987925 - AluY SINE Alu -13 298 3 3885 258 59 31 chrX 38612005 38613472 -123986458 - L1MD1 LINE L1 -4846 1550 35 376 345 52 40 chrX 38613888 38614216 -123985714 + LTR16C LTR ERVL 150 481 -10 278 270 0 32 chrX 38614381 38614444 -123985486 - L2 LINE L2 -10 3262 3202 639 170 30 44 chrX 38614585 38614720 -123985210 - FLAM_C SINE Alu 0 133 1 428 245 108 22 chrX 38614734 38614873 -123985057 - MLT1E1 LTR MaLR -503 151 1 4330 249 59 15 chrX 38614873 38615479 -123984451 + L1ME LINE L1 534 1112 -5284 414 0 0 0 chrX 38615479 38615525 -123984405 + (CA)n Simple_repeat Simple_repeat 1 46 0 4330 249 59 15 chrX 38615525 38615642 -123984288 + L1ME LINE L1 1112 1222 -5174 2449 88 3 0 chrX 38615642 38615948 -123983982 + AluSq SINE Alu 1 307 -6 4330 249 59 15 chrX 38615948 38616718 -123983212 + L1ME LINE L1 1222 2094 -4302 242 216 0 0 chrX 38616730 38616781 -123983149 + MER34 LTR ERV1 25 75 -467 1272 225 3 39 chrX 38616868 38617202 -123982728 + L1ME LINE L1 3595 3916 -2299 4373 162 31 5 chrX 38617211 38618052 -123981878 + L1MB5 LINE L1 5312 6174 0 * 4640 204 37 41 chrX 38618051 38619429 -123980501 + L1ME LINE L1 3901 5272 -943 2116 22 15 0 chrX 38619428 38619700 -123980230 - L1PA4 LINE L1 -790 5356 5081 * 7163 19 0 0 chrX 38619700 38620526 -123979404 + L1PA4 LINE L1 5326 6153 -2 376 153 0 24 chrX 38620529 38620614 -123979316 + L1MDb LINE L1 1314 1396 -5013 279 226 5 21 chrX 38620619 38620753 -123979177 + L1ME LINE L1 5257 5392 -843 1763 170 39 12 chrX 38620753 38621088 -123978842 + MER2 DNA MER2_type 1 344 0 279 226 5 21 chrX 38621088 38621142 -123978788 + L1ME LINE L1 5392 5562 -673 2133 159 87 7 chrX 38621142 38621717 -123978213 - MER39 LTR ERV1 0 707 13 2372 134 14 21 chrX 38621717 38622031 -123977899 - MER41B LTR ERV1 0 635 323 1961 128 67 28 chrX 38622031 38622390 -123977540 - THE1C LTR MaLR -2 373 1 2372 134 14 21 chrX 38622390 38622493 -123977437 - MER41B LTR ERV1 -312 323 221 2321 59 0 0 chrX 38622493 38622782 -123977148 - L1PA5 LINE L1 -2 6152 5864 1509 113 4 0 chrX 38622801 38623032 -123976898 - MER41B LTR ERV1 -403 232 1 465 130 122 26 chrX 38623125 38623240 -123976690 + L1MA10 LINE L1 6207 6332 -2 1048 312 133 20 chrX 38623274 38623927 -123976003 + L2 LINE L2 2157 2883 -431 294 95 0 0 chrX 38627833 38627875 -123972055 + (TG)n Simple_repeat Simple_repeat 2 43 0 1858 157 10 16 chrX 38629123 38629428 -123970502 - AluSx SINE Alu -1 311 9 222 258 15 15 chrX 38629570 38629636 -123970294 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 451 339 108 34 chrX 38629793 38630399 -123969531 - L2 LINE L2 -156 3116 2465 2251 146 29 54 chrX 38630399 38630878 -123969052 + MLT1C LTR MaLR 1 467 0 451 339 108 34 chrX 38630878 38630913 -123969017 - L2 LINE L2 -807 2465 2434 2066 177 67 14 chrX 38630930 38631366 -123968564 - MLT1C LTR MaLR -2 465 7 269 365 45 36 chrX 38631413 38631635 -123968295 - L2 LINE L2 -922 2392 2169 854 285 5 24 chrX 38631758 38632022 -123967908 - MIR SINE MIR -3 259 1 279 0 0 0 chrX 38632344 38632375 -123967555 + (CA)n Simple_repeat Simple_repeat 2 32 0 1192 261 60 70 chrX 38633725 38634038 -123965892 + LTR16C LTR ERVL 1 316 -175 1652 174 3 11 chrX 38634038 38634320 -123965610 + AluJo SINE Alu 1 280 -32 234 0 0 0 chrX 38634321 38634347 -123965583 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 1192 261 60 70 chrX 38634347 38634513 -123965417 + LTR16C LTR ERVL 315 477 -14 268 253 89 13 chrX 38636017 38636096 -123963834 + MIR SINE MIR 106 190 -72 1074 247 103 56 chrX 38636983 38637469 -123962461 + LTR33 LTR ERVL 1 509 -12 942 246 38 0 chrX 38638651 38638887 -123961043 + LTR16A LTR ERVL 206 450 0 638 274 76 5 chrX 38639499 38639707 -123960223 - MIR SINE MIR 0 262 41 279 237 0 0 chrX 38639866 38639925 -123960005 - MER112 DNA MER1_type -21 239 181 215 258 45 0 chrX 38639926 38639992 -123959938 + A-rich Low_complexity Low_complexity 2 70 0 367 230 58 29 chrX 38639995 38640134 -123959796 - MER112 DNA MER1_type -104 156 14 311 329 95 56 chrX 38640194 38640258 -123959672 + L1MC4a LINE L1 5709 5769 -2039 2186 116 0 7 chrX 38640258 38640552 -123959378 + AluSg SINE Alu 1 292 -18 311 329 95 56 chrX 38640552 38640718 -123959212 + L1MC4a LINE L1 5769 5948 -1860 1007 263 122 20 chrX 38640836 38641288 -123958642 - LTR33 LTR ERVL 0 521 24 443 275 99 0 chrX 38641598 38641729 -123958201 + MIR SINE MIR 118 261 -1 2183 117 0 0 chrX 38641759 38642041 -123957889 + AluSx SINE Alu 1 282 -30 189 301 130 88 chrX 38642173 38642558 -123957372 + L2 LINE L2 2829 3229 -43 370 247 6 24 chrX 38642613 38642724 -123957206 - MIR SINE MIR -93 115 5 23 33 0 0 chrX 38643443 38643473 -123956457 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 38643649 38643674 -123956256 + AT_rich Low_complexity Low_complexity 1 25 0 467 260 49 16 chrX 38643783 38643906 -123956024 + L2 LINE L2 3176 3302 -11 262 264 176 7 chrX 38644130 38644403 -123955527 + L1ME4a LINE L1 5800 6118 -3 1837 233 119 41 chrX 38645241 38645349 -123954581 - L2 LINE L2 -465 2849 2751 1932 150 19 41 chrX 38645349 38645716 -123954214 + MLT1A1 LTR MaLR 5 363 -2 1837 233 119 41 chrX 38645716 38646239 -123953691 - L2 LINE L2 -563 2751 2169 1450 274 42 35 chrX 38646398 38646879 -123953051 + L2 LINE L2 2482 2965 -349 531 271 73 98 chrX 38647517 38647871 -123952059 + HAL1 LINE L1 42 382 -2125 2628 46 0 0 chrX 38647871 38648173 -123951757 + AluY SINE Alu 3 304 -7 531 271 73 98 chrX 38648173 38648308 -123951622 + HAL1 LINE L1 382 519 -1988 669 235 147 51 chrX 38648554 38648882 -123951048 + HAL1 LINE L1 860 1155 -1352 1928 144 16 16 chrX 38648882 38649194 -123950736 - AluJo SINE Alu 0 312 1 669 235 147 51 chrX 38649194 38649335 -123950595 + HAL1 LINE L1 1155 1281 -1226 282 56 0 0 chrX 38649335 38649371 -123950559 + (CA)n Simple_repeat Simple_repeat 2 37 0 669 235 147 51 chrX 38649371 38649453 -123950477 + HAL1 LINE L1 1281 1465 -1042 370 279 64 75 chrX 38649471 38649736 -123950194 + HAL1 LINE L1 2246 2507 0 651 279 88 30 chrX 38650250 38650612 -123949318 + MARNA DNA Mariner 191 573 -13 187 188 14 14 chrX 38651444 38651513 -123948417 + GA-rich Low_complexity Low_complexity 2 70 0 216 292 18 71 chrX 38652025 38652138 -123947792 - MIR SINE MIR -136 126 20 632 259 38 0 chrX 38653751 38653909 -123946021 - MIR SINE MIR -29 233 70 184 333 8 89 chrX 38654148 38654385 -123945545 - L2 LINE L2 -228 3044 2827 204 163 0 41 chrX 38654456 38654505 -123945425 + A-rich Low_complexity Low_complexity 3 49 0 285 354 54 40 chrX 38654765 38654988 -123944942 - L2 LINE L2 -536 2778 2553 570 353 4 13 chrX 38655056 38655291 -123944639 + MIR SINE MIR 1 233 -29 1404 110 0 43 chrX 38657537 38657746 -123942184 + AluSg/x SINE Alu 80 279 -33 360 0 0 0 chrX 38657748 38657788 -123942142 + (CA)n Simple_repeat Simple_repeat 1 40 0 719 214 195 14 chrX 38659518 38659733 -123940197 - MIR SINE MIR -3 259 6 1981 134 14 0 chrX 38660078 38660391 -123939539 + AluSx SINE Alu 1 312 0 1310 150 11 115 chrX 38660440 38660726 -123939204 + AluJo SINE Alu 40 295 -17 316 267 95 9 chrX 38660778 38660894 -123939036 + L1ME4a LINE L1 5901 6026 -95 2368 173 57 49 chrX 38661552 38662147 -123937783 - L1MB5 LINE L1 -8 6166 5567 313 370 8 24 chrX 38663502 38663629 -123936301 + MIR SINE MIR 20 144 -118 1248 242 57 84 chrX 38663653 38664059 -123935871 + L2 LINE L2 2667 3043 -270 2464 92 0 0 chrX 38664059 38664363 -123935567 + AluSq SINE Alu 1 304 -9 1248 242 57 84 chrX 38664363 38664626 -123935304 + L2 LINE L2 3043 3312 -1 218 293 37 0 chrX 38664629 38664711 -123935219 + MIR SINE MIR 178 262 0 1888 139 24 11 chrX 38665161 38665448 -123934482 - AluJo SINE Alu -19 293 3 1603 217 0 3 chrX 38666456 38666751 -123933179 + AluJo SINE Alu 3 296 -16 422 238 13 20 chrX 38666783 38666934 -123932996 - L1ME4a LINE L1 -11 6110 5961 373 315 24 18 chrX 38667040 38667205 -123932725 - L1ME4a LINE L1 -353 5768 5603 1366 159 0 13 chrX 38667205 38667431 -123932499 + AluJo SINE Alu 83 305 -7 1645 147 13 45 chrX 38667589 38667901 -123932029 - AluJo SINE Alu -10 302 1 2258 110 0 16 chrX 38668454 38668762 -123931168 + AluSx SINE Alu 1 303 -9 667 243 52 43 chrX 38668810 38669020 -123930910 - MIR SINE MIR 0 262 51 220 316 29 52 chrX 38669066 38669202 -123930728 - L2 LINE L2 -465 2849 2717 4733 156 58 1 chrX 38670262 38670850 -123929080 + MER6 DNA MER2_type 2 650 -215 2369 92 0 10 chrX 38670850 38671155 -123928775 - AluSq SINE Alu -11 302 1 4733 156 58 1 chrX 38671155 38671382 -123928548 + MER6 DNA MER2_type 650 863 -2 306 0 0 0 chrX 38671680 38671714 -123928216 + (TG)n Simple_repeat Simple_repeat 2 35 0 3450 107 42 29 chrX 38672497 38673094 -123926836 + MER4B LTR ERV1 6 610 0 213 139 56 0 chrX 38673602 38673638 -123926292 - MER91B DNA MER1_type -135 55 18 761 256 47 54 chrX 38674680 38674997 -123924933 + MLT1H LTR MaLR 40 354 -195 1860 175 0 6 chrX 38675521 38675835 -123924095 - AluJb SINE Alu 0 312 1 296 303 119 9 chrX 38676400 38676509 -123923421 - MIR SINE MIR -48 214 94 1066 215 22 18 chrX 38676553 38676776 -123923154 + MIR SINE MIR 38 261 -1 303 93 0 0 chrX 38676904 38676947 -123922983 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 233 385 0 0 chrX 38677225 38677308 -123922622 + L2 LINE L2 3189 3271 -1 21 71 0 0 chrX 38677755 38677797 -123922133 + AT_rich Low_complexity Low_complexity 1 42 0 470 348 36 74 chrX 38678353 38678657 -123921273 + L1MEd LINE L1 495 786 -5586 2422 155 29 7 chrX 38678657 38679070 -123920860 + MSTB LTR MaLR 1 422 -4 470 348 36 74 chrX 38679070 38679101 -123920829 + L1MEd LINE L1 786 817 -5555 2782 210 42 3 chrX 38679179 38679822 -123920108 + L1MC4a LINE L1 7140 7807 -1 625 275 139 69 chrX 38679848 38680382 -123919548 + L1MEd LINE L1 892 1462 -4910 252 282 146 9 chrX 38680394 38680607 -123919323 + L1MEd LINE L1 1418 1659 -4725 357 276 123 34 chrX 38680645 38681116 -123918814 + L1MEd LINE L1 2974 3486 -2896 400 320 78 22 chrX 38681162 38681521 -123918409 + L1MEd LINE L1 3605 3983 -2399 402 234 177 42 chrX 38681524 38681804 -123918126 + L1MEd LINE L1 4240 4587 -1795 1755 110 12 0 chrX 38681804 38682058 -123917872 + AluSg1 SINE Alu 53 309 0 402 234 177 42 chrX 38682058 38682161 -123917769 + L1MEd LINE L1 4587 4675 -1707 1685 203 3 14 chrX 38683212 38683508 -123916422 - AluJo SINE Alu -19 293 1 5499 215 34 26 chrX 38683639 38685874 -123914056 + L1PA16 LINE L1 773 3082 -3121 5465 169 41 19 chrX 38685884 38686848 -123913082 + L1PA16 LINE L1 4103 5045 -1178 2153 130 3 0 chrX 38686848 38687148 -123912782 + AluSx SINE Alu 1 301 -11 5465 169 41 19 chrX 38687148 38687411 -123912519 + L1PA16 LINE L1 5045 5301 -922 234 0 0 0 chrX 38687411 38687437 -123912493 + (CAA)n Simple_repeat Simple_repeat 1 26 0 5465 169 41 19 chrX 38687437 38688260 -123911670 + L1PA16 LINE L1 5301 6203 -20 376 300 90 37 chrX 38688278 38688638 -123911292 + L1MEd LINE L1 4798 5215 -1167 603 0 0 0 chrX 38688638 38688705 -123911225 + (TG)n Simple_repeat Simple_repeat 2 68 0 376 300 90 37 chrX 38688705 38688925 -123911005 + L1MEd LINE L1 5215 5422 -960 * 4228 217 51 16 chrX 38688918 38689268 -123910662 + L1ME1 LINE L1 4115 4451 -1715 3329 115 36 31 chrX 38689268 38689791 -123910139 + MER1A DNA MER1_type 2 527 0 4228 217 51 16 chrX 38689791 38690865 -123909065 + L1ME1 LINE L1 4451 5582 -584 2273 112 3 0 chrX 38690865 38691160 -123908770 + AluSx SINE Alu 1 296 -16 2236 73 16 35 chrX 38691198 38691511 -123908419 + AluY SINE Alu 1 307 -4 2975 144 50 179 chrX 38691511 38691744 -123908186 + L1MCa LINE L1 100 362 -6064 665 189 0 0 chrX 38691744 38691855 -123908075 + FLAM_A SINE Alu 24 134 -8 2975 144 50 179 chrX 38691855 38692319 -123907611 + L1MCa LINE L1 362 728 -5698 2173 118 0 16 chrX 38692319 38692633 -123907297 - AluSx SINE Alu -3 309 1 2975 144 50 179 chrX 38692633 38692929 -123907001 + L1MCa LINE L1 728 1061 -5365 2774 133 37 55 chrX 38692930 38693548 -123906382 - MER4B LTR ERV1 0 779 1 3241 114 85 11 chrX 38693548 38693882 -123906048 + L1MCa LINE L1 1059 1367 -5059 200 57 0 29 chrX 38693882 38693917 -123906013 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3241 114 85 11 chrX 38693917 38694532 -123905398 + L1MCa LINE L1 1367 2183 -4243 1890 157 136 16 chrX 38694532 38694914 -123905016 + MSTA LTR MaLR 1 428 0 3241 114 85 11 chrX 38694914 38694966 -123904964 + L1MCa LINE L1 2183 2230 -4196 417 163 0 12 chrX 38695055 38695135 -123904795 + L1ME1 LINE L1 5578 5656 -510 389 237 64 4 chrX 38695152 38695317 -123904613 + L1ME1 LINE L1 5988 6184 0 1213 232 182 32 chrX 38695759 38696221 -123903709 - MLT1G LTR MaLR 0 590 60 6458 108 35 10 chrX 38696221 38697607 -123902323 + L1MA2 LINE L1 4879 6299 -5 548 242 16 0 chrX 38697627 38697751 -123902179 - MLT1G1 LTR MaLR -469 126 1 612 276 25 5 chrX 38698155 38698354 -123901576 + L1ME2 LINE L1 4945 5147 -999 * 2294 187 31 78 chrX 38698353 38698996 -123900934 + L1ME2 LINE L1 5542 6154 -10 23 54 0 0 chrX 38699626 38699663 -123900267 + AT_rich Low_complexity Low_complexity 1 37 0 792 283 129 27 chrX 38699873 38700244 -123899686 + MLT1I LTR MaLR 1 409 0 541 282 76 54 chrX 38700282 38700759 -123899171 - L1ME LINE L1 -302 5819 5317 238 306 36 22 chrX 38701428 38701650 -123898280 - L1ME LINE L1 -1705 4441 4217 461 286 75 0 chrX 38701877 38702038 -123897892 - Charlie8 DNA MER1_type -2153 264 92 1401 122 50 29 chrX 38702368 38702646 -123897284 - L1MA9 LINE L1 -5 6307 6024 895 269 57 73 chrX 38702657 38703188 -123896742 + LTR67 LTR ERVL 36 557 0 417 311 124 43 chrX 38703901 38704110 -123895820 - MIR SINE MIR -12 250 25 195 331 84 32 chrX 38704290 38704444 -123895486 - L2 LINE L2 -20 3252 3091 216 0 0 0 chrX 38704529 38704553 -123895377 + (CTG)n Simple_repeat Simple_repeat 3 26 0 27 0 0 0 chrX 38704856 38704883 -123895047 + AT_rich Low_complexity Low_complexity 1 27 0 287 220 193 18 chrX 38705321 38705430 -123894500 - MIR3 SINE MIR -19 189 62 262 268 0 0 chrX 38705652 38705708 -123894222 + MIR SINE MIR 201 256 -6 228 356 92 49 chrX 38705779 38706308 -123893622 - L2 LINE L2 -568 2746 2189 1760 69 0 0 chrX 38706308 38706525 -123893405 + L1PA7 LINE L1 5938 6154 0 228 356 92 49 chrX 38706525 38706568 -123893362 - L2 LINE L2 -1125 2189 2149 201 195 0 0 chrX 38706535 38706576 -123893354 + GA-rich Low_complexity Low_complexity 2 42 0 * 492 266 8 0 chrX 38706666 38706790 -123893140 - L2 LINE L2 -7 3306 3182 255 103 0 0 chrX 38706798 38706837 -123893093 + (CA)n Simple_repeat Simple_repeat 2 40 0 614 289 75 82 chrX 38707154 38707766 -123892164 - L2 LINE L2 -18 3295 2686 24 0 0 0 chrX 38710019 38710043 -123889887 + AT_rich Low_complexity Low_complexity 1 24 0 666 289 50 21 chrX 38710424 38710666 -123889264 - MIR SINE MIR -1 261 13 1370 246 7 46 chrX 38710816 38711251 -123888679 + LTR16B LTR ERVL 45 462 -2 754 199 0 0 chrX 38712506 38712637 -123887293 + FLAM_A SINE Alu 1 131 -2 313 329 42 64 chrX 38712833 38713116 -123886814 - L3 LINE CR1 -236 1341 1065 368 245 80 53 chrX 38713220 38713335 -123886595 + MIR SINE MIR 31 155 -71 2002 258 26 2 chrX 38713335 38713788 -123886142 + LTR16B LTR ERVL 1 464 0 368 245 80 53 chrX 38713788 38713830 -123886100 + MIR SINE MIR 155 194 -32 343 305 76 52 chrX 38713854 38714065 -123885865 - L3 LINE CR1 -638 939 720 701 187 116 56 chrX 38714065 38714263 -123885667 - MER63A DNA MER1_type 0 210 1 343 305 76 52 chrX 38714263 38714300 -123885630 - L3 LINE CR1 -857 720 685 465 255 42 62 chrX 38716710 38716902 -123883028 - MER5A DNA MER1_type -1 188 1 4262 242 60 35 chrX 38717153 38718642 -123881288 + L2 LINE L2 1785 3313 0 188 290 47 37 chrX 38719048 38719155 -123880775 - L2 LINE L2 -93 3220 3113 625 236 128 10 chrX 38719160 38719363 -123880567 + MIR SINE MIR 35 261 -1 615 220 0 35 chrX 38720306 38720447 -123879483 - MER5A DNA MER1_type 0 189 54 1893 195 21 0 chrX 38721110 38721443 -123878487 + MER58B DNA MER1_type 1 340 -1 261 0 0 0 chrX 38723118 38723147 -123876783 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 725 256 6 6 chrX 38724375 38724551 -123875379 - MER69A DNA AcHobo -1 176 1 184 325 13 26 chrX 38724600 38724677 -123875253 - MIR3 SINE MIR -8 200 125 212 305 0 0 chrX 38727309 38727368 -123872562 + L2 LINE L2 3236 3294 -19 493 277 153 6 chrX 38727602 38727796 -123872134 + MIR SINE MIR 40 261 -1 27 0 0 0 chrX 38727845 38727872 -123872058 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chrX 38728108 38728165 -123871765 + AT_rich Low_complexity Low_complexity 1 57 0 312 250 155 0 chrX 38728566 38728650 -123871280 + L2 LINE L2 3217 3313 0 491 192 50 0 chrX 38729089 38729188 -123870742 - MIR SINE MIR -120 142 39 234 338 0 0 chrX 38729365 38729436 -123870494 + (TG)n Simple_repeat Simple_repeat 2 72 0 1862 184 0 0 chrX 38730161 38730471 -123869459 + AluJb SINE Alu 1 310 -2 2666 48 0 3 chrX 38730575 38730887 -123869043 + AluY SINE Alu 1 311 0 1932 122 64 10 chrX 38730950 38731283 -123868647 + AluSx SINE Alu 1 349 0 1065 246 0 0 chrX 38731343 38731563 -123868367 + L1ME2 LINE L1 5935 6154 -10 33648 95 12 59 chrX 38732446 38738228 -123861702 + L1PA7 LINE L1 1 5436 -718 1812 114 0 23 chrX 38738228 38738490 -123861440 + AluSg1 SINE Alu 40 295 -14 33648 95 12 59 chrX 38738490 38739171 -123860759 + L1PA7 LINE L1 5436 6147 -7 970 215 14 23 chrX 38739686 38739905 -123860025 + L1ME2 LINE L1 5939 6155 -9 207 0 0 0 chrX 38741373 38741396 -123858534 + (A)n Simple_repeat Simple_repeat 1 23 0 1942 143 0 55 chrX 38741831 38742159 -123857771 + AluJb SINE Alu 1 310 -2 2384 187 15 73 chrX 38742196 38742732 -123857198 - LTR40a LTR ERVL -14 505 1 239 237 34 0 chrX 38742952 38743011 -123856919 - L2 LINE L2 -2 3270 3210 24 32 0 0 chrX 38743113 38743144 -123856786 + AT_rich Low_complexity Low_complexity 1 31 0 473 268 24 39 chrX 38743608 38743789 -123856141 - MIR SINE MIR -49 213 37 1765 151 14 4 chrX 38744880 38745185 -123854745 - AluJo SINE Alu 0 310 3 1030 138 32 37 chrX 38745887 38745959 -123853971 + MER53 DNA DNA 1 72 -117 1896 136 41 10 chrX 38745959 38746253 -123853677 - AluSx SINE Alu -9 303 1 1030 138 32 37 chrX 38746253 38746369 -123853561 + MER53 DNA DNA 72 188 -1 2569 158 22 0 chrX 38749000 38749412 -123850518 + MSTB LTR MaLR 2 422 -4 304 245 96 0 chrX 38749412 38749506 -123850424 + MIR SINE MIR 95 197 -65 225 390 53 11 chrX 38749535 38749725 -123850205 + L2 LINE L2 2472 2669 -645 327 185 65 102 chrX 38749740 38749848 -123850082 + L2 LINE L2 3203 3306 -7 585 262 53 44 chrX 38750826 38751051 -123848879 - L2 LINE L2 -621 2693 2467 580 274 218 24 chrX 38751345 38751757 -123848173 - L3 LINE CR1 -149 1428 937 916 158 0 44 chrX 38754000 38754158 -123845772 + L1MB5 LINE L1 6024 6174 0 290 106 53 75 chrX 38754159 38754237 -123845693 + L1MB7 LINE L1 6098 6174 0 1645 128 0 24 chrX 38754267 38754517 -123845413 + AluJo SINE Alu 44 287 -25 2404 100 0 0 chrX 38755250 38755559 -123844371 + AluSx SINE Alu 1 309 -3 1314 201 45 48 chrX 38755754 38756067 -123843863 + AluJo SINE Alu 1 312 0 526 253 33 22 chrX 38756415 38756597 -123843333 + HsTC2 DNA Tc2 478 661 -1237 2466 63 3 0 chrX 38756597 38756900 -123843030 + AluY SINE Alu 1 304 -7 349 255 90 90 chrX 38757308 38757448 -123842482 + L1ME4a LINE L1 2725 2864 -3282 49 66 0 0 chrX 38757448 38757539 -123842391 + AT_rich Low_complexity Low_complexity 1 91 0 349 255 90 90 chrX 38757539 38757618 -123842312 + L1ME4a LINE L1 2863 3034 -3112 387 296 53 23 chrX 38757649 38757711 -123842219 + MER5B DNA MER1_type 1 60 -118 2051 129 10 7 chrX 38757711 38758014 -123841916 + AluSq SINE Alu 1 304 -9 387 296 53 23 chrX 38758014 38758083 -123841847 + MER5B DNA MER1_type 60 136 -42 289 194 126 29 chrX 38758085 38758188 -123841742 + MER39 LTR ERV1 1 113 -429 1226 191 109 30 chrX 38758223 38758606 -123841324 + MER39 LTR ERV1 92 584 -1 223 250 0 0 chrX 38758607 38758651 -123841279 - MER5B DNA MER1_type -134 44 1 2242 91 7 7 chrX 38758678 38758976 -123840954 + AluSx SINE Alu 1 298 -14 765 98 9 181 chrX 38759525 38759646 -123840284 + MER5B DNA MER1_type 1 71 -107 339 25 0 0 chrX 38759646 38759686 -123840244 + (CA)n Simple_repeat Simple_repeat 1 40 0 765 98 9 181 chrX 38759686 38759779 -123840151 + MER5B DNA MER1_type 71 178 0 350 298 103 62 chrX 38759984 38760226 -123839704 + L1ME4a LINE L1 3972 4223 -1923 2364 82 0 0 chrX 38760547 38760838 -123839092 - AluSx SINE Alu -21 291 1 25 31 0 0 chrX 38761378 38761410 -123838520 + AT_rich Low_complexity Low_complexity 1 32 0 384 287 52 68 chrX 38761570 38761936 -123837994 + L1ME4a LINE L1 5530 5889 -232 2053 92 0 41 chrX 38761940 38762234 -123837696 + AluSx SINE Alu 1 282 -30 264 137 0 0 chrX 38762234 38762285 -123837645 + (G)n Simple_repeat Simple_repeat 1 51 0 194 62 31 0 chrX 38762285 38762317 -123837613 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 0 2412 65 0 0 chrX 38762806 38763100 -123836830 - AluY SINE Alu -17 294 1 180 0 0 0 chrX 38763294 38763314 -123836616 + (T)n Simple_repeat Simple_repeat 1 20 0 183 162 0 0 chrX 38764758 38764795 -123835135 + (CAG)n Simple_repeat Simple_repeat 2 38 0 22 17 0 68 chrX 38766328 38766350 -123833580 + AT_rich Low_complexity Low_complexity 1 23 -32 2079 118 3 40 chrX 38766350 38766673 -123833257 + AluJo SINE Alu 1 311 -1 22 17 0 68 chrX 38766673 38766691 -123833239 + AT_rich Low_complexity Low_complexity 23 38 -17 968 111 0 0 chrX 38766691 38766817 -123833113 + FLAM_C SINE Alu 1 126 -7 22 17 0 68 chrX 38766817 38766834 -123833096 + AT_rich Low_complexity Low_complexity 38 55 0 26 50 0 0 chrX 38766889 38766929 -123833001 + AT_rich Low_complexity Low_complexity 1 40 0 648 285 101 21 chrX 38768854 38769272 -123830658 - HAL1b LINE L1 -646 702 252 2469 77 0 3 chrX 38769288 38769599 -123830331 - AluSg SINE Alu 0 310 1 208 312 16 16 chrX 38771743 38771868 -123828062 + (TA)n Simple_repeat Simple_repeat 2 126 0 2301 96 28 0 chrX 38771868 38772223 -123827707 - Tigger4(Zombi) DNA MER2_type -1 2730 2366 2127 104 124 3 chrX 38772225 38772581 -123827349 + MSTA LTR MaLR 1 399 -29 1323 98 5 16 chrX 38772581 38772765 -123827165 - AluSg/x SINE Alu 0 312 131 1969 101 77 3 chrX 38772766 38773092 -123826838 - Tigger4(Zombi) DNA MER2_type -555 2176 1827 376 77 0 0 chrX 38773093 38773145 -123826785 - MADE1 DNA Mariner -1 79 28 4388 119 39 7 chrX 38773156 38773856 -123826074 - Tigger4(Zombi) DNA MER2_type -1962 769 48 414 0 0 0 chrX 38773868 38773914 -123826016 + (TG)n Simple_repeat Simple_repeat 2 47 0 247 397 84 0 chrX 38774245 38774376 -123825554 - L2 LINE L2 -23 3249 3108 266 324 0 14 chrX 38774463 38774534 -123825396 - L2 LINE L2 -21 3251 3182 * 758 289 59 8 chrX 38774526 38774765 -123825165 - MIR SINE MIR -3 259 9 434 310 189 28 chrX 38774888 38775376 -123824554 - L2 LINE L2 -224 3048 2485 21 0 0 0 chrX 38776291 38776312 -123823618 + AT_rich Low_complexity Low_complexity 1 21 0 662 276 61 0 chrX 38776689 38776885 -123823045 - MIR SINE MIR -48 214 7 2302 102 0 16 chrX 38777062 38777365 -123822565 + AluSg SINE Alu 1 298 -12 186 133 0 0 chrX 38777367 38777397 -123822533 + (ATG)n Simple_repeat Simple_repeat 2 31 0 249 57 0 0 chrX 38777581 38777616 -123822314 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 754 223 49 61 chrX 38777982 38778199 -123821731 + L1ME2 LINE L1 5906 6282 -52 2400 92 0 0 chrX 38778199 38778504 -123821426 + AluSg SINE Alu 1 305 -5 754 223 49 61 chrX 38778504 38778555 -123821375 + L1ME2 LINE L1 6282 6332 -2 362 248 8 33 chrX 38778616 38778737 -123821193 + L1MD2 LINE L1 6067 6184 -175 * 647 131 15 200 chrX 38778711 38778766 -123821164 + L1MD3 LINE L1 7784 7847 -148 4506 78 3 11 chrX 38778766 38779381 -123820549 + MER4B LTR ERV1 1 610 0 647 131 15 200 chrX 38779381 38779585 -123820345 + L1MD3 LINE L1 7847 7995 0 25 31 0 0 chrX 38779694 38779726 -123820204 + AT_rich Low_complexity Low_complexity 1 32 0 1024 127 17 29 chrX 38779941 38780090 -123819840 + MLT1B LTR MaLR 218 366 -24 3759 136 9 79 chrX 38780090 38780449 -123819481 + LTR8 LTR ERV1 1 283 -408 2227 112 0 7 chrX 38780449 38780753 -123819177 + AluSc SINE Alu 3 304 -5 3759 136 9 79 chrX 38780753 38781136 -123818794 + LTR8 LTR ERV1 283 691 0 1024 127 17 29 chrX 38781136 38781159 -123818771 + MLT1B LTR MaLR 366 388 -2 2851 200 61 10 chrX 38781161 38781847 -123818083 - L1ME1 LINE L1 -9 6157 5437 22 56 0 0 chrX 38782516 38782552 -123817378 + AT_rich Low_complexity Low_complexity 1 36 0 2958 164 25 5 chrX 38782690 38783251 -123816679 + MER90 LTR ERV1 1 572 -42 31 0 0 0 chrX 38783289 38783320 -123816610 + AT_rich Low_complexity Low_complexity 1 31 0 647 254 38 22 chrX 38783894 38784079 -123815851 - MIR3 SINE MIR -6 202 15 432 102 45 57 chrX 38784194 38784282 -123815648 - MER90 LTR ERV1 -361 253 167 2459 87 0 0 chrX 38784598 38784907 -123815023 + AluSx SINE Alu 1 309 -3 1233 123 21 141 chrX 38784907 38785241 -123814689 + MER96B DNA MER1_type? 124 417 0 230 207 17 17 chrX 38785241 38785299 -123814631 - MER20B DNA MER1_type -695 88 31 259 248 129 0 chrX 38785329 38785430 -123814500 - MLT1L LTR MaLR -80 535 422 2590 147 27 7 chrX 38785465 38785946 -123813984 + LTR45B LTR ERV1 2 525 0 261 272 65 30 chrX 38786063 38786232 -123813698 - MLT1J LTR MaLR -336 175 1 1450 204 32 60 chrX 38786369 38786839 -123813091 - LTR16A1 LTR ERVL 0 457 1 2213 107 0 0 chrX 38787286 38787567 -123812363 + AluSx SINE Alu 17 297 -15 183 80 0 0 chrX 38788033 38788058 -123811872 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chrX 38791276 38791303 -123808627 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 1475 118 57 0 chrX 38791739 38792001 -123807929 + L1MA8 LINE L1 6013 6289 -2 240 111 0 0 chrX 38792714 38792750 -123807180 + (A)n Simple_repeat Simple_repeat 1 36 0 365 289 100 30 chrX 38792942 38793289 -123806641 + L1ME2 LINE L1 5477 5858 -306 2409 89 0 3 chrX 38793290 38793594 -123806336 + AluSq SINE Alu 1 303 -10 192 40 0 0 chrX 38794213 38794238 -123805692 + (TC)n Simple_repeat Simple_repeat 1 25 0 207 171 0 0 chrX 38794238 38794273 -123805657 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 358 41 32 chrX 38794423 38794546 -123805384 - L2 LINE L2 -11 3302 3179 2767 139 12 7 chrX 38794563 38794987 -123804943 + MSTB LTR MaLR 1 426 0 586 290 52 23 chrX 38795007 38795232 -123804698 - MIR SINE MIR -4 258 30 200 298 64 32 chrX 38795571 38795665 -123804265 - L2 LINE L2 -16 3256 3160 228 320 62 10 chrX 38795930 38796027 -123803903 - L2 LINE L2 -2 3270 3169 829 192 68 57 chrX 38796030 38796193 -123803737 + L1MB5 LINE L1 5050 5219 -927 620 202 8 23 chrX 38796193 38796322 -123803608 + FLAM_C SINE Alu 5 131 -2 829 192 68 57 chrX 38796322 38796439 -123803491 + L1MB5 LINE L1 5219 5333 -813 583 90 0 0 chrX 38796439 38796517 -123803413 - LTR3b LTR ERVK 0 500 423 279 56 0 0 chrX 38796518 38796554 -123803376 - LTR3b LTR ERVK -42 458 423 3458 83 11 0 chrX 38796560 38797029 -123802901 - LTR3b LTR ERVK -10 490 17 4174 150 19 49 chrX 38797029 38797122 -123802808 + L1MB5 LINE L1 5348 5442 -732 1802 159 14 27 chrX 38797122 38797417 -123802513 + AluJb SINE Alu 1 291 -21 4174 150 19 49 chrX 38797417 38798176 -123801754 + L1MB5 LINE L1 5442 6174 0 2189 127 3 0 chrX 38798621 38798920 -123801010 - AluSq SINE Alu -12 301 2 878 214 122 13 chrX 38799136 38799440 -123800490 - MER113 DNA MER1_type? -132 389 53 21 0 0 0 chrX 38799528 38799549 -123800381 + AT_rich Low_complexity Low_complexity 1 21 0 2365 115 0 0 chrX 38799549 38799861 -123800069 - AluSx SINE Alu 0 312 1 2843 246 37 39 chrX 38800640 38801420 -123798510 - L2 LINE L2 -687 2627 1849 266 224 0 0 chrX 38801938 38801987 -123797943 + L2 LINE L2 3261 3309 -4 364 348 60 5 chrX 38802127 38802311 -123797619 + MIR SINE MIR 10 203 -59 1798 82 0 0 chrX 38802421 38802640 -123797290 + AluSg/x SINE Alu 73 291 -21 3285 170 36 40 chrX 38803434 38804128 -123795802 + LTR8 LTR ERV1 1 691 0 201 174 0 43 chrX 38805483 38805515 -123794415 - MIR SINE MIR -40 222 191 2234 121 0 3 chrX 38805515 38805812 -123794118 - AluJb SINE Alu -16 296 1 201 174 0 43 chrX 38805812 38805825 -123794105 - MIR SINE MIR -71 191 179 1582 137 42 0 chrX 38805839 38806124 -123793806 + L1MA5 LINE L1 5977 6273 -27 333 242 8 23 chrX 38806125 38806257 -123793673 + L1MC4a LINE L1 5295 5424 -2384 447 204 20 120 chrX 38806259 38806336 -123793594 - MIR SINE MIR -66 196 144 2442 97 3 0 chrX 38806336 38806646 -123793284 - AluJb SINE Alu -1 311 1 447 204 20 120 chrX 38806646 38806746 -123793184 - MIR SINE MIR -118 144 36 21 36 0 0 chrX 38807193 38807221 -123792709 + AT_rich Low_complexity Low_complexity 1 28 0 4193 87 25 40 chrX 38808051 38808695 -123791235 + MER51A LTR ERV1 1 634 0 243 276 19 19 chrX 38808695 38808800 -123791130 + MLT1L LTR MaLR 511 615 0 1985 223 12 45 chrX 38808903 38809226 -123790704 + L1MD2 LINE L1 4682 5014 -1132 1659 175 7 17 chrX 38809226 38809523 -123790407 - AluJo SINE Alu -17 295 2 1985 223 12 45 chrX 38809523 38809585 -123790345 + L1MD2 LINE L1 5014 5076 -1070 1745 168 3 27 chrX 38809585 38809882 -123790048 + AluJb SINE Alu 1 290 -22 1985 223 12 45 chrX 38809882 38810137 -123789793 + L1MD2 LINE L1 5076 5302 -844 1011 158 0 0 chrX 38810142 38810309 -123789621 + AluSg/x SINE Alu 137 303 0 4881 167 29 24 chrX 38810315 38811253 -123788677 + L1MD2 LINE L1 5301 6246 -113 1882 171 0 22 chrX 38811253 38811569 -123788361 + AluJo SINE Alu 1 309 -3 4881 167 29 24 chrX 38811569 38811684 -123788246 + L1MD2 LINE L1 6246 6359 0 982 280 65 21 chrX 38813349 38813769 -123786161 + MLT1L LTR MaLR 70 613 -2 2333 95 7 0 chrX 38814086 38814391 -123785539 - AluSp SINE Alu -6 307 1 645 182 7 7 chrX 38814391 38814534 -123785396 - L1M4 LINE L1 -838 5308 5166 957 214 13 5 chrX 38814537 38814761 -123785169 + L1MC4a LINE L1 5691 5916 -1892 21 0 0 0 chrX 38814809 38814830 -123785100 + AT_rich Low_complexity Low_complexity 1 21 0 370 328 176 50 chrX 38814898 38815422 -123784508 + L1MC4a LINE L1 6041 6630 -1178 1296 152 62 79 chrX 38815424 38815722 -123784208 + L1MB5 LINE L1 5186 5460 -903 2308 88 10 3 chrX 38815722 38816029 -123783901 + AluSx SINE Alu 1 309 -3 1296 152 62 79 chrX 38816029 38816188 -123783742 + L1MB5 LINE L1 5460 5620 -743 3381 187 74 45 chrX 38816191 38817235 -123782695 + Charlie6 DNA MER1_type 2309 3382 -118 363 191 0 0 chrX 38817233 38817296 -123782634 + Charlie6 DNA MER1_type 2443 2505 -995 * 914 182 145 0 chrX 38817338 38817552 -123782378 - L1MC/D LINE L1 -2422 5620 5376 601 195 25 0 chrX 38817553 38817671 -123782259 + Charlie6 DNA MER1_type 3373 3493 -7 724 113 0 93 chrX 38817671 38817821 -123782109 + L1MB5 LINE L1 6038 6173 -1 1081 179 0 67 chrX 38817916 38818140 -123781790 + AluJb SINE Alu 85 293 -19 224 320 32 80 chrX 38818511 38818526 -123781404 + L3 LINE CR1 1402 1416 -161 2351 85 0 0 chrX 38818526 38818820 -123781110 + AluSx SINE Alu 1 294 -18 224 320 32 80 chrX 38818820 38818929 -123781001 + L3 LINE CR1 1416 1520 -57 183 156 0 0 chrX 38819633 38819665 -123780265 + (CA)n Simple_repeat Simple_repeat 2 33 0 260 223 64 53 chrX 38819712 38819806 -123780124 + L1ME3A LINE L1 4818 4912 -1234 2344 70 0 24 chrX 38819987 38820285 -123779645 + AluSx SINE Alu 1 291 -21 1004 233 51 19 chrX 38820305 38820895 -123779035 + L1ME3A LINE L1 5362 6011 -159 377 169 65 5 chrX 38820905 38821028 -123778902 - MER53 DNA DNA 0 189 1 2206 125 0 3 chrX 38821063 38821367 -123778563 - AluJb SINE Alu -9 303 1 2438 57 7 0 chrX 38822213 38822510 -123777420 + AluSx SINE Alu 1 299 -13 457 273 168 23 chrX 38822700 38822920 -123777010 + MIR SINE MIR 11 262 0 914 104 15 22 chrX 38823817 38823830 -123776100 - AluJo SINE Alu -178 134 122 189 0 0 0 chrX 38823830 38823851 -123776079 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 914 104 15 22 chrX 38823851 38823972 -123775958 - AluJo SINE Alu -190 122 1 251 304 50 39 chrX 38824406 38824587 -123775343 + L2 LINE L2 2833 3015 -257 1822 109 87 0 chrX 38824882 38825157 -123774773 + AluSg SINE Alu 1 299 -11 368 269 117 43 chrX 38825160 38825686 -123774244 - L1ME1 LINE L1 -303 5863 5286 312 268 105 57 chrX 38825704 38825846 -123774084 - L1ME1 LINE L1 -877 5269 5110 2285 128 0 0 chrX 38825846 38826158 -123773772 - AluSx SINE Alu 0 312 1 312 268 105 57 chrX 38826158 38826243 -123773687 - L1ME1 LINE L1 -1036 5110 5031 2551 182 25 88 chrX 38826259 38826539 -123773391 - L1MC4 LINE L1 0 8042 7746 1527 153 12 24 chrX 38826539 38826794 -123773136 - AluJo SINE Alu -17 295 44 2551 182 25 88 chrX 38826794 38826856 -123773074 - L1MC4 LINE L1 -296 7746 7682 1767 149 52 7 chrX 38826856 38827144 -123772786 - AluJb SINE Alu -11 301 1 2551 182 25 88 chrX 38827144 38827333 -123772597 - L1MC4 LINE L1 -360 7682 7568 2370 100 3 0 chrX 38827333 38827644 -123772286 + AluSx SINE Alu 1 312 0 2551 182 25 88 chrX 38827644 38827863 -123772067 - L1MC4 LINE L1 -474 7568 7337 462 271 14 0 chrX 38827907 38828047 -123771883 - L1MC4 LINE L1 -1423 6619 6478 389 153 0 0 chrX 38828047 38828106 -123771824 + Tigger2 DNA MER2_type 2 60 -2658 325 122 0 0 chrX 38828121 38828170 -123771760 + MER83B LTR ERV1 226 274 -104 872 201 6 0 chrX 38828175 38828334 -123771596 - MER8 DNA MER2_type -79 160 1 747 242 47 23 chrX 38828334 38828590 -123771340 - L1MC4a LINE L1 -1345 6463 6202 2407 84 0 0 chrX 38828599 38828897 -123771033 - AluSc SINE Alu -11 298 1 510 297 62 58 chrX 38828946 38829139 -123770791 - L1MEd LINE L1 -2892 3237 3046 2837 122 15 34 chrX 38829139 38829588 -123770342 + LTR24 LTR ERV1 1 457 -10 186 43 0 0 chrX 38829588 38829611 -123770319 + (TC)n Simple_repeat Simple_repeat 2 24 0 2419 106 0 0 chrX 38829611 38829922 -123770008 - AluSx SINE Alu -1 311 1 2837 122 15 34 chrX 38829922 38829947 -123769983 + LTR24 LTR ERV1 455 467 0 510 297 62 58 chrX 38829947 38830261 -123769669 - L1MEd LINE L1 -3083 3046 2735 2335 105 0 9 chrX 38830261 38830576 -123769354 - AluSx SINE Alu 0 312 1 510 297 62 58 chrX 38830576 38831170 -123768760 - L1MEd LINE L1 -3394 2735 2131 22 56 0 0 chrX 38831443 38831479 -123768451 + AT_rich Low_complexity Low_complexity 1 36 0 345 243 36 21 chrX 38831562 38831702 -123768228 - L1MEd LINE L1 -5269 850 709 340 235 12 35 chrX 38832138 38832223 -123767707 - L2 LINE L2 -6 3307 3225 4389 189 23 34 chrX 38832881 38833861 -123766069 + L1MB7 LINE L1 3560 4528 -1618 1987 140 0 3 chrX 38833861 38834147 -123765783 - AluSx SINE Alu -27 285 1 4389 189 23 34 chrX 38834147 38834282 -123765648 + L1MB7 LINE L1 4528 4663 -1483 723 193 129 0 chrX 38834314 38834485 -123765445 + AluSp SINE Alu 117 309 -4 4147 169 31 48 chrX 38834485 38835345 -123764585 + L1MB7 LINE L1 4678 5512 -672 2028 107 7 4 chrX 38835345 38835651 -123764279 + AluSx SINE Alu 11 312 0 4147 169 31 48 chrX 38835651 38836303 -123763627 + L1MB7 LINE L1 5512 6173 -11 2248 85 0 0 chrX 38836321 38836628 -123763302 - AluSc SINE Alu 0 307 1 722 215 6 19 chrX 38836639 38836797 -123763133 - MER3 DNA MER1_type -53 156 1 722 194 44 103 chrX 38836821 38837051 -123762879 + L1MC5 LINE L1 7510 7717 -244 2306 105 0 0 chrX 38837051 38837369 -123762561 + AluSx SINE Alu 1 318 0 722 194 44 103 chrX 38837369 38837477 -123762453 + L1MC5 LINE L1 7717 7830 -131 5569 125 27 49 chrX 38837479 38837915 -123762015 + L1MA8 LINE L1 5163 5607 -684 2252 91 0 0 chrX 38837915 38838227 -123761703 + AluSq SINE Alu 1 312 0 5569 125 27 49 chrX 38838227 38838394 -123761536 + L1MA8 LINE L1 5607 5776 -515 195 42 0 0 chrX 38838394 38838418 -123761512 + (TA)n Simple_repeat Simple_repeat 1 24 0 5569 125 27 49 chrX 38838418 38838963 -123760967 + L1MA8 LINE L1 5776 6291 0 1760 178 7 13 chrX 38838982 38839286 -123760644 + AluJo SINE Alu 1 302 -10 262 280 0 21 chrX 38839287 38839380 -123760550 + L1MC5 LINE L1 7822 7912 -49 447 19 0 0 chrX 38839388 38839440 -123760490 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 21 0 0 0 chrX 38839741 38839762 -123760168 + AT_rich Low_complexity Low_complexity 1 21 0 541 265 41 8 chrX 38840075 38840320 -123759610 + L1ME3A LINE L1 4316 4568 -1578 309 221 10 39 chrX 38840346 38840450 -123759480 + L1ME3A LINE L1 5862 5962 -208 2205 104 27 0 chrX 38840681 38840980 -123758950 - AluSx SINE Alu -5 307 1 601 71 0 0 chrX 38840992 38841077 -123758853 - L1PA6 LINE L1 -1 6153 6069 371 343 36 7 chrX 38841792 38841929 -123758001 - MIR SINE MIR -113 149 9 193 156 0 143 chrX 38841982 38842059 -123757871 - L2 LINE L2 -1039 2275 2210 1674 205 40 30 chrX 38842140 38842545 -123757385 + LTR2 LTR ERV1 41 449 0 275 114 0 0 chrX 38842560 38842593 -123757337 - L1PA5 LINE L1 -278 5876 5841 2381 35 3 0 chrX 38842593 38842881 -123757049 + L1PA5 LINE L1 5864 6152 -2 658 246 161 5 chrX 38843004 38843203 -123756727 + MIR SINE MIR 20 249 -13 350 141 141 0 chrX 38843606 38843677 -123756253 - L1PB4 LINE L1 -11 6145 6065 600 281 50 63 chrX 38843774 38844250 -123755680 + L1MEd LINE L1 788 1257 -4862 2266 229 19 28 chrX 38844374 38845007 -123754923 + L1ME1 LINE L1 5516 6142 -24 323 72 0 175 chrX 38845011 38845066 -123754864 - L1MB8 LINE L1 -1 6177 6145 2129 75 0 4 chrX 38845066 38845331 -123754599 - AluSq SINE Alu -20 293 30 323 72 0 175 chrX 38845331 38845372 -123754558 - L1MB8 LINE L1 -33 6145 6098 1683 91 40 33 chrX 38845373 38845649 -123754281 - L1MA8 LINE L1 0 6291 6014 236 250 13 0 chrX 38845957 38846033 -123753897 + L1 LINE L1 3686 3762 -2384 2188 128 0 0 chrX 38846035 38846332 -123753598 + AluSx SINE Alu 1 297 -15 519 308 50 33 chrX 38846543 38846842 -123753088 + L1MEd LINE L1 5 308 -5811 4511 92 18 191 chrX 38846911 38847646 -123752284 + Tigger3b DNA MER2_type 1 861 -2168 2337 104 3 0 chrX 38847646 38847953 -123751977 + AluSq SINE Alu 1 308 -5 4511 92 18 191 chrX 38847953 38848055 -123751875 + Tigger3b DNA MER2_type 861 979 -2050 1188 150 62 5 chrX 38848055 38848248 -123751682 - AluJb SINE Alu -108 204 1 4511 92 18 191 chrX 38848248 38848698 -123751232 + Tigger3b DNA MER2_type 979 1232 0 270 328 133 52 chrX 38848801 38848875 -123751055 + L2 LINE L2 1866 1933 -1381 2126 127 0 0 chrX 38848875 38849167 -123750763 - AluSx SINE Alu -20 292 1 270 328 133 52 chrX 38849167 38849476 -123750454 + L2 LINE L2 1933 2280 -1034 1540 246 91 26 chrX 38849480 38849984 -123749946 + MER34 LTR ERV1 6 542 0 505 349 105 31 chrX 38849993 38850534 -123749396 + L2 LINE L2 2285 2865 -449 230 160 85 5 chrX 38850556 38850661 -123749269 + AluJo SINE Alu 115 287 -15 334 333 212 19 chrX 38850691 38851012 -123748918 + L2 LINE L2 2890 3272 0 375 228 19 25 chrX 38851212 38851370 -123748560 - HAL1b LINE L1 -194 1154 998 254 303 115 66 chrX 38852011 38852255 -123747675 + L2 LINE L2 3016 3271 -1 279 157 0 0 chrX 38852259 38852310 -123747620 + GA-rich Low_complexity Low_complexity 2 52 0 187 338 23 45 chrX 38852311 38852327 -123747603 - L2 LINE L2 -214 3058 3043 198 103 0 0 chrX 38852327 38852356 -123747574 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 187 338 23 45 chrX 38852356 38852472 -123747458 - L2 LINE L2 -229 3043 2929 1756 102 0 147 chrX 38852496 38852850 -123747080 + AluSx SINE Alu 1 302 0 740 232 79 6 chrX 38853493 38853670 -123746260 + MIR SINE MIR 13 202 -60 311 285 126 29 chrX 38853697 38853974 -123745956 - L2 LINE L2 -1132 2182 1879 421 229 0 10 chrX 38854395 38854491 -123745439 + MER34 LTR ERV1 1 95 -447 734 217 29 6 chrX 38854494 38854669 -123745261 + MER34 LTR ERV1 362 540 -2 216 0 0 0 chrX 38854770 38854794 -123745136 + (GA)n Simple_repeat Simple_repeat 1 24 0 3812 183 6 25 chrX 38854907 38855118 -123744812 - L1P LINE L1 -910 5236 5023 2112 137 16 0 chrX 38855118 38855424 -123744506 - AluJb SINE Alu -1 311 1 3812 183 6 25 chrX 38855424 38856064 -123743866 - L1P LINE L1 -1123 5023 4401 * 5651 108 17 7 chrX 38856062 38856950 -123742980 + L1PA16 LINE L1 5260 6156 -10 2604 139 29 5 chrX 38857010 38857426 -123742504 + MSTB LTR MaLR 1 426 0 3004 165 37 15 chrX 38857829 38858375 -123741555 - MER68 LTR ERV1 -3 559 2 225 0 0 0 chrX 38858504 38858529 -123741401 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 267 31 0 0 chrX 38858528 38858560 -123741370 + (GA)n Simple_repeat Simple_repeat 1 32 0 2080 105 0 21 chrX 38858574 38858860 -123741070 + AluSx SINE Alu 24 303 -9 311 304 101 13 chrX 38859552 38859688 -123740242 - L2 LINE L2 0 3313 3160 2250 108 0 6 chrX 38859688 38860002 -123739928 + AluSx SINE Alu 1 312 0 311 304 101 13 chrX 38860002 38860023 -123739907 - L2 LINE L2 -153 3160 3142 327 399 91 10 chrX 38860200 38860508 -123739422 - L2 LINE L2 -400 2914 2582 1662 192 11 21 chrX 38860574 38860861 -123739069 + AluJb SINE Alu 1 284 -28 1994 156 10 0 chrX 38861046 38861353 -123738577 - AluJo SINE Alu -2 310 1 343 283 9 0 chrX 38861567 38861673 -123738257 - L1MC4a LINE L1 -1874 5934 5828 312 91 0 0 chrX 38861680 38861724 -123738206 + U6 snRNA snRNA 2 45 -62 2361 106 0 3 chrX 38861740 38862051 -123737879 - AluSx SINE Alu -2 310 1 237 271 35 0 chrX 38862053 38862138 -123737792 - L1MC4a LINE L1 -1983 5825 5738 195 100 0 0 chrX 38862138 38862168 -123737762 + (TTA)n Simple_repeat Simple_repeat 1 30 0 237 337 53 98 chrX 38863096 38863381 -123736549 + L3b LINE CR1 1172 1443 -140 441 0 0 0 chrX 38863919 38863968 -123735962 + (TG)n Simple_repeat Simple_repeat 1 49 0 2216 86 4 0 chrX 38863968 38864247 -123735683 - AluSp SINE Alu -33 280 1 231 333 69 13 chrX 38864525 38864684 -123735246 - L3 LINE CR1 -565 1012 845 2997 129 29 76 chrX 38864758 38865213 -123734717 + MER41A LTR ERV1 1 425 -129 2260 113 0 0 chrX 38865213 38865523 -123734407 - AluY SINE Alu -1 310 1 2997 129 29 76 chrX 38865523 38865647 -123734283 + MER41A LTR ERV1 425 553 -1 2384 104 0 0 chrX 38865834 38866133 -123733797 + AluSg SINE Alu 1 299 -11 611 147 0 0 chrX 38866184 38866286 -123733644 - MER2 DNA MER2_type -135 210 109 277 252 93 22 chrX 38866292 38866431 -123733499 - MLT1L LTR MaLR -1 614 466 745 219 39 11 chrX 38866696 38866874 -123733056 + MIR SINE MIR 69 251 -11 318 268 97 8 chrX 38866877 38867082 -123732848 + L1MC4 LINE L1 5707 5816 -305 2529 149 14 65 chrX 38868289 38868668 -123731262 + L1MA9 LINE L1 5230 5627 -685 2460 62 0 3 chrX 38868668 38868972 -123730958 + AluY SINE Alu 1 303 -8 2324 97 0 3 chrX 38868982 38869293 -123730637 + AluSp SINE Alu 2 311 -2 2529 149 14 65 chrX 38869293 38869485 -123730445 + L1MA9 LINE L1 5636 5782 -530 336 238 71 0 chrX 38869495 38869579 -123730351 + L1MC4 LINE L1 6614 6703 -1339 * 340 296 0 0 chrX 38869504 38869592 -123730338 - L1MC4 LINE L1 -1340 6702 6615 213 94 0 0 chrX 38869592 38869624 -123730306 + (CA)n Simple_repeat Simple_repeat 1 32 0 1436 130 16 49 chrX 38869650 38869897 -123730033 + AluJb SINE Alu 55 293 -19 1104 187 32 166 chrX 38869897 38870433 -123729497 + L1MA9 LINE L1 5824 6287 -25 1479 170 87 8 chrX 38870433 38870698 -123729232 - AluJb SINE Alu -26 286 1 22 35 0 0 chrX 38870698 38870727 -123729203 + AT_rich Low_complexity Low_complexity 1 29 0 551 284 83 27 chrX 38870803 38871013 -123728917 + MIR SINE MIR 1 218 -44 1549 123 0 5 chrX 38871125 38871337 -123728593 + AluSg/x SINE Alu 85 295 -17 288 0 0 0 chrX 38872534 38872566 -123727364 + (CA)n Simple_repeat Simple_repeat 1 32 0 180 77 0 0 chrX 38873007 38873033 -123726897 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 209 56 13 chrX 38873254 38873704 -123726226 + L1ME2 LINE L1 5694 6162 -2 1931 150 0 0 chrX 38873725 38874012 -123725918 + AluJo SINE Alu 1 287 -25 2279 103 3 0 chrX 38874260 38874586 -123725344 - AluSx SINE Alu 0 312 1 2290 119 0 0 chrX 38875394 38875706 -123724224 - AluSx SINE Alu 0 312 1 15820 106 15 35 chrX 38875849 38878313 -123721617 + Tigger1 DNA MER2_type 4 2418 0 1680 143 115 3 chrX 38878427 38878749 -123721181 - MER46B DNA MER2_type 0 236 4 266 235 0 0 chrX 38879048 38879099 -123720831 - L2 LINE L2 0 3313 3263 22 0 0 0 chrX 38880543 38880565 -123719365 + AT_rich Low_complexity Low_complexity 1 22 0 1913 218 59 50 chrX 38880619 38880775 -123719155 - MER97a DNA MER1_type? 0 894 741 2211 162 6 3 chrX 38880775 38881139 -123718791 + MLT1A1 LTR MaLR 1 365 0 1913 218 59 50 chrX 38881139 38881219 -123718711 - MER97a DNA MER1_type? -153 741 663 726 91 0 0 chrX 38881219 38881318 -123718612 + HY3 scRNA scRNA 1 99 -2 1913 218 59 50 chrX 38881318 38881772 -123718158 - MER97a DNA MER1_type? -231 663 197 1292 177 41 4 chrX 38881772 38882038 -123717892 + MER33 DNA MER1_type 1 276 -48 15034 167 14 45 chrX 38882051 38882531 -123717399 - L1MA4 LINE L1 -5 7714 7221 1860 161 7 0 chrX 38882531 38882829 -123717101 + AluJb SINE Alu 1 300 -12 15034 167 14 45 chrX 38882829 38883062 -123716868 - L1MA4 LINE L1 -498 7221 6982 2135 129 3 0 chrX 38883062 38883372 -123716558 - AluSx SINE Alu -1 311 1 15034 167 14 45 chrX 38883372 38884388 -123715542 - L1MA4 LINE L1 -737 6982 5937 2197 89 11 0 chrX 38884388 38884697 -123715233 + AluSx SINE Alu 1 312 0 15034 167 14 45 chrX 38884697 38887367 -123712563 - L1MA4 LINE L1 -1782 5937 3187 2227 129 3 0 chrX 38887367 38887676 -123712254 - AluSg SINE Alu 0 310 1 15034 167 14 45 chrX 38887676 38887832 -123712098 - L1MA4 LINE L1 -4532 3187 3283 1730 152 3 33 chrX 38887832 38888135 -123711795 + AluJo SINE Alu 14 307 -5 15034 167 14 45 chrX 38888135 38888226 -123711704 - L1MA4 LINE L1 -4435 3284 3192 326 123 35 0 chrX 38888226 38888283 -123711647 + MER33 DNA MER1_type 266 324 0 970 173 52 5 chrX 38888286 38888477 -123711453 - MER97b DNA MER1_type? -852 201 2 198 0 0 0 chrX 38888980 38889002 -123710928 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 444 291 48 15 chrX 38889021 38889227 -123710703 - MLT1J LTR MaLR -8 503 291 1760 195 20 0 chrX 38889234 38889639 -123710291 + L1M4 LINE L1 4387 4799 -1347 2570 196 38 9 chrX 38889647 38890280 -123709650 + L1MDa LINE L1 1747 2397 -4143 741 125 100 0 chrX 38890297 38890417 -123709513 + MER20 DNA MER1_type 88 219 0 882 155 14 20 chrX 38890649 38890797 -123709133 + AluJo SINE Alu 4 150 -162 20440 162 50 16 chrX 38890797 38892083 -123707847 - L1 LINE L1 -1193 6372 5131 1941 140 49 7 chrX 38892083 38892369 -123707561 - AluJb SINE Alu -14 298 1 20440 162 50 16 chrX 38892369 38894314 -123705616 - L1 LINE L1 -2434 5131 3253 2196 131 0 3 chrX 38894314 38894627 -123705303 - AluSq SINE Alu -1 312 1 20440 162 50 16 chrX 38894627 38897378 -123702552 - L1 LINE L1 -4312 3253 32 822 167 35 14 chrX 38897385 38897529 -123702401 - AluJo SINE Alu -165 147 1 1310 235 45 3 chrX 38897610 38897989 -123701941 + L1M4 LINE L1 3548 3942 -2204 1125 213 37 4 chrX 38898000 38898244 -123701686 + L1M4 LINE L1 5 256 -6286 2570 144 16 94 chrX 38898366 38898975 -123700955 + L1MB5 LINE L1 5577 6138 -36 1085 249 32 41 chrX 38899026 38899065 -123700865 + L1M4 LINE L1 4428 4466 -2178 2208 99 3 0 chrX 38899065 38899378 -123700552 + AluSx SINE Alu 1 314 0 1085 249 32 41 chrX 38899378 38899679 -123700251 + L1M4 LINE L1 4466 4766 -1878 1975 187 30 9 chrX 38899699 38900269 -123699661 + L1MD2 LINE L1 5716 6346 -13 790 307 88 22 chrX 38900294 38900395 -123699535 + L1M4 LINE L1 3047 3140 -3006 1634 195 34 3 chrX 38900395 38900692 -123699238 + AluJo SINE Alu 1 306 -6 790 307 88 22 chrX 38900692 38901522 -123698408 + L1M4 LINE L1 3140 4167 -1979 1978 266 51 10 chrX 38901539 38902239 -123697691 + HAL1 LINE L1 1154 1882 -625 1435 227 113 13 chrX 38902702 38903161 -123696769 - MLT1D LTR MaLR 0 505 1 333 291 79 5 chrX 38903274 38903463 -123696467 + L1M4 LINE L1 4613 4815 -1331 11519 51 3 0 chrX 38903645 38905190 -123694740 - L1P LINE L1 -2693 3453 1904 1289 122 0 0 chrX 38905279 38905476 -123694454 + L1 LINE L1 4056 4252 -1894 468 240 33 0 chrX 38905476 38905597 -123694333 + LTR16A LTR ERVL 69 193 -257 826 284 88 18 chrX 38905644 38906138 -123693792 - MLT1H1 LTR MaLR -63 492 1 470 252 36 0 chrX 38906143 38906254 -123693676 - MER91C DNA MER1_type -10 130 16 578 219 0 16 chrX 38906833 38906956 -123692974 - L2 LINE L2 0 3313 3193 628 265 30 6 chrX 38906993 38907159 -123692771 + MER97c DNA MER1_type? 10 179 -911 2191 96 3 0 chrX 38907261 38907553 -123692377 + AluSp SINE Alu 15 307 -6 1430 255 67 40 chrX 38908949 38909479 -123690451 + L2 LINE L2 2568 3112 -201 2234 124 0 6 chrX 38909479 38909793 -123690137 - AluJb SINE Alu 0 312 1 1430 255 67 40 chrX 38909793 38909997 -123689933 + L2 LINE L2 3112 3309 -4 335 252 0 63 chrX 38910145 38910256 -123689674 + MLT1K LTR MaLR 470 573 -15 282 369 35 28 chrX 38910976 38911279 -123688651 - L2 LINE L2 -2 3311 2924 2220 120 0 0 chrX 38911319 38911618 -123688312 + AluSx SINE Alu 1 299 -13 2553 70 3 0 chrX 38911618 38911920 -123688010 + AluSp SINE Alu 1 303 -10 220 267 17 0 chrX 38911920 38911980 -123687950 + GA-rich Low_complexity Low_complexity 3 63 0 1519 290 44 0 chrX 38911991 38912422 -123687508 + LTR16A LTR ERVL 1 450 0 843 165 0 0 chrX 38912453 38912580 -123687350 + FLAM_C SINE Alu 1 127 -16 29 0 0 0 chrX 38912581 38912610 -123687320 + AT_rich Low_complexity Low_complexity 1 29 0 2396 98 0 6 chrX 38912961 38913276 -123686654 - AluSq SINE Alu 0 313 1 1237 117 8 76 chrX 38913680 38913844 -123686086 - L1MA5 LINE L1 -5 6295 6152 2109 128 0 22 chrX 38913844 38914157 -123685773 + AluSx SINE Alu 1 306 -6 1237 117 8 76 chrX 38914157 38914241 -123685689 - L1MA5 LINE L1 -148 6152 6064 6053 112 17 2 chrX 38914300 38915561 -123684369 + L1PA13 LINE L1 4865 6152 -11 395 242 242 6 chrX 38915702 38915884 -123684046 - MIR SINE MIR -18 244 20 2412 101 7 0 chrX 38915944 38916252 -123683678 + AluSg SINE Alu 1 310 0 2218 108 3 3 chrX 38916263 38916559 -123683371 + AluSp SINE Alu 1 296 -17 768 284 136 30 chrX 38916674 38917012 -123682918 - LTR16A LTR ERVL -61 389 16 368 60 40 0 chrX 38917475 38917525 -123682405 + MSTB LTR MaLR 1 52 -374 2005 119 4 4 chrX 38917526 38917804 -123682126 + AluJb SINE Alu 2 279 -33 2338 119 19 28 chrX 38917804 38918164 -123681766 + THE1B LTR MaLR 8 364 0 2483 129 26 11 chrX 38918195 38918574 -123681356 + MSTB LTR MaLR 42 426 0 289 260 195 0 chrX 38918575 38918652 -123681278 + L2 LINE L2 3195 3286 -27 257 223 22 54 chrX 38918679 38918810 -123681120 - MLT1H LTR MaLR -16 533 416 424 263 39 36 chrX 38918870 38919065 -123680865 - MLT1H LTR MaLR -241 168 20 198 69 0 0 chrX 38919084 38919113 -123680817 + L2 LINE L2 3282 3310 -3 389 250 44 0 chrX 38919114 38919228 -123680702 + L1MC4a LINE L1 5820 5940 -181 407 104 0 15 chrX 38919443 38919510 -123680420 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 270 116 0 0 chrX 38919504 38919547 -123680383 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 * 898 101 13 13 chrX 38919547 38919696 -123680234 + (GAAA)n Simple_repeat Simple_repeat 1 149 0 2426 93 0 6 chrX 38920464 38920777 -123679153 + AluSx SINE Alu 1 311 -1 2729 40 0 0 chrX 38921324 38921627 -123678303 + AluY SINE Alu 1 303 -8 180 0 0 0 chrX 38921719 38921739 -123678191 + (TAA)n Simple_repeat Simple_repeat 2 21 0 373 308 0 0 chrX 38921743 38921834 -123678096 - MLT1K LTR MaLR -358 230 140 187 296 0 57 chrX 38922500 38922588 -123677342 + MIR SINE MIR 20 102 -160 1515 178 0 75 chrX 38922761 38923093 -123676837 + AluJb SINE Alu 1 307 -5 2422 90 0 6 chrX 38923148 38923459 -123676471 + AluSg SINE Alu 1 309 -1 2705 43 0 0 chrX 38924006 38924308 -123675622 + AluY SINE Alu 1 302 -9 180 0 0 0 chrX 38924400 38924420 -123675510 + (TAA)n Simple_repeat Simple_repeat 2 21 0 373 308 0 0 chrX 38924424 38924515 -123675415 - MLT1K LTR MaLR -358 230 140 187 296 0 57 chrX 38925181 38925269 -123674661 + MIR SINE MIR 20 102 -160 2919 10 0 0 chrX 38925296 38925607 -123674323 - AluY SINE Alu 0 311 1 1499 177 0 78 chrX 38925768 38926101 -123673829 + AluJb SINE Alu 1 307 -5 2262 92 0 0 chrX 38926156 38926468 -123673462 + AluSg SINE Alu 1 312 0 246 286 46 81 chrX 38926488 38926645 -123673285 - MIR SINE MIR -62 146 31 184 286 82 51 chrX 38926670 38926768 -123673162 + MIR SINE MIR 115 215 -47 828 167 0 0 chrX 38927287 38927425 -123672505 - FRAM SINE Alu -1 175 38 216 97 0 0 chrX 38927473 38927504 -123672426 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 1469 191 169 27 chrX 38927817 38928226 -123671704 - MLT1C LTR MaLR 0 467 1 1456 187 17 27 chrX 38928706 38929006 -123670924 + MLT1A1 LTR MaLR 1 297 -68 2547 54 0 0 chrX 38929041 38929338 -123670592 + AluY SINE Alu 1 297 -14 361 100 83 0 chrX 38929476 38929536 -123670394 + MLT1A1 LTR MaLR 290 354 -11 299 96 19 0 chrX 38930508 38930560 -123669370 + (TC)n Simple_repeat Simple_repeat 1 53 0 1330 241 74 43 chrX 38930819 38931238 -123668692 + LTR16A1 LTR ERVL 9 440 -17 364 281 62 8 chrX 38931711 38931839 -123668091 - MIR SINE MIR -112 150 16 1178 208 78 20 chrX 38932078 38932574 -123667356 + MLT1G1 LTR MaLR 1 543 -12 193 289 78 70 chrX 38932729 38932871 -123667059 + L2 LINE L2 3160 3302 -11 565 278 54 10 chrX 38933076 38933281 -123666649 + MIR SINE MIR 46 259 -3 210 329 71 0 chrX 38933795 38933865 -123666065 + MER91C DNA MER1_type 31 105 -35 250 286 41 0 chrX 38934551 38934649 -123665281 - L3b LINE CR1 -200 1383 1282 2317 114 3 0 chrX 38934756 38935062 -123664868 - AluSx SINE Alu -5 307 1 420 252 133 26 chrX 38935398 38935549 -123664381 - MIR SINE MIR -68 194 28 673 242 67 6 chrX 38936000 38936165 -123663765 - FAM SINE Alu 0 175 1 1022 242 99 68 chrX 38936213 38936318 -123663612 + L1MC4a LINE L1 5520 5620 -2188 1614 254 33 35 chrX 38936318 38936774 -123663156 - LTR16A1 LTR ERVL 0 457 3 1022 242 99 68 chrX 38936774 38936972 -123662958 + L1MC4a LINE L1 5620 5840 -1968 1846 137 10 40 chrX 38936972 38937271 -123662659 + AluJo SINE Alu 13 302 -10 1022 242 99 68 chrX 38937271 38937350 -123662580 + L1MC4a LINE L1 5840 5915 -1893 329 42 0 21 chrX 38937365 38937412 -123662518 + (CA)n Simple_repeat Simple_repeat 1 93 0 329 42 0 21 chrX 38937412 38937460 -123662470 + (CA)n Simple_repeat Simple_repeat 2 48 0 1579 170 30 104 chrX 38937602 38937996 -123661934 - MLT1A1 LTR MaLR 0 365 1 392 118 15 0 chrX 38938034 38938102 -123661828 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 335 184 133 20 chrX 38938546 38938644 -123661286 + MER103 DNA DNA 45 153 -13 1133 266 119 29 chrX 38938652 38939073 -123660857 - MLT1H1 LTR MaLR -96 459 1 1554 143 101 8 chrX 38939609 38939867 -123660063 - AluJb SINE Alu -30 282 1 2192 90 0 21 chrX 38939985 38940299 -123659631 - AluSx SINE Alu 0 308 1 2410 86 0 3 chrX 38940972 38941274 -123658656 + AluSx SINE Alu 1 301 -11 240 290 0 14 chrX 38941406 38941475 -123658455 - MIR3 SINE MIR -3 205 138 248 273 93 29 chrX 38941815 38941954 -123657976 + MLT2E LTR ERVL 475 622 -6 3727 93 16 84 chrX 38943048 38943261 -123656669 + L1PA16 LINE L1 5565 5791 -375 2100 125 7 3 chrX 38943261 38943564 -123656366 + AluSx SINE Alu 1 304 -8 3727 93 16 84 chrX 38943564 38943996 -123655934 + L1PA16 LINE L1 5791 6166 0 1985 85 0 120 chrX 38944004 38944345 -123655585 + AluSg SINE Alu 1 300 0 1960 146 3 13 chrX 38944680 38944981 -123654949 + AluJo SINE Alu 1 298 -14 5898 138 44 5 chrX 38944988 38945962 -123653968 - L1MC1 LINE L1 -6 6327 5316 1011 161 0 0 chrX 38946372 38946552 -123653378 + (TA)n Simple_repeat Simple_repeat 1 180 0 2059 139 0 16 chrX 38946771 38947074 -123652856 + AluJo SINE Alu 1 298 -14 1695 97 9 0 chrX 38948761 38948988 -123650942 - MER30 DNA MER1_type 0 230 2 1101 101 0 36 chrX 38949010 38949169 -123650761 + MLT1A1 LTR MaLR 1 155 -210 781 188 0 0 chrX 38949169 38949302 -123650628 + FLAM_A SINE Alu 1 133 0 183 156 0 0 chrX 38949312 38949344 -123650586 + GA-rich Low_complexity Low_complexity 2 33 0 * 1004 105 12 0 chrX 38949342 38949403 -123650527 + (GGAA)n Simple_repeat Simple_repeat 4 63 -104 2031 130 0 52 chrX 38949403 38949727 -123650203 + AluSx SINE Alu 5 311 -1 1004 105 12 0 chrX 38949727 38949827 -123650103 + (GGAA)n Simple_repeat Simple_repeat 63 167 0 1144 169 14 10 chrX 38949834 38950041 -123649889 + MLT1A1 LTR MaLR 156 363 -2 2089 153 72 25 chrX 38950045 38950450 -123649480 - MSTA LTR MaLR 0 428 5 1935 133 22 35 chrX 38951287 38951633 -123648297 + AluJb SINE Alu 1 342 0 25 0 0 50 chrX 38951643 38951659 -123648271 + AT_rich Low_complexity Low_complexity 1 16 -22 2166 126 0 0 chrX 38951659 38951944 -123647986 + AluSx SINE Alu 1 285 -27 270 0 0 0 chrX 38951944 38951974 -123647956 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 25 0 0 50 chrX 38951974 38951996 -123647934 + AT_rich Low_complexity Low_complexity 14 38 0 2121 126 0 3 chrX 38952998 38953300 -123646630 + AluY SINE Alu 1 301 -10 639 233 68 23 chrX 38953581 38953847 -123646083 + L1MC5 LINE L1 7411 7688 -273 1082 235 82 132 chrX 38953881 38954564 -123645366 + MER77 LTR ERV1 21 698 -6 421 254 89 52 chrX 38954564 38954777 -123645153 + L1MC5 LINE L1 7696 7916 -45 3038 210 9 25 chrX 38954832 38955466 -123644464 + MLT1E3 LTR MaLR 1 624 0 183 80 0 0 chrX 38955562 38955587 -123644343 + (T)n Simple_repeat Simple_repeat 1 25 0 2468 97 3 0 chrX 38956258 38956568 -123643362 + AluSp SINE Alu 1 311 -2 1132 287 47 13 chrX 38957093 38957726 -123642204 + L1ME LINE L1 5086 5757 -413 1936 82 96 28 chrX 38958232 38958514 -123641416 + AluSq SINE Alu 1 301 -12 1314 232 80 32 chrX 38960148 38960549 -123639381 - LTR38 LTR ERV1 0 556 137 398 248 93 0 chrX 38960673 38960802 -123639128 - MIR3 SINE MIR -38 170 30 742 267 39 17 chrX 38961005 38961237 -123638693 - L2 LINE L2 0 3313 3077 2118 85 38 72 chrX 38961251 38961446 -123638484 - AluSp SINE Alu -6 307 126 3388 44 7 0 chrX 38961446 38961859 -123638071 - L1PA6 LINE L1 0 6154 5739 2118 85 38 72 chrX 38961859 38961981 -123637949 - AluSp SINE Alu -187 126 1 783 260 72 3 chrX 38961981 38962286 -123637644 - L2 LINE L2 -239 3074 2755 5035 87 11 31 chrX 38962776 38962938 -123636992 - LTR8 LTR ERV1 0 691 527 2346 92 3 10 chrX 38962938 38963242 -123636688 - AluSx SINE Alu -9 303 2 5035 87 11 31 chrX 38963242 38963784 -123636146 - LTR8 LTR ERV1 -164 527 1 245 56 83 0 chrX 38964679 38964715 -123635215 - LTR40b LTR ERVL -2 460 422 4317 124 11 0 chrX 38964715 38965334 -123634596 - MER41B LTR ERV1 0 635 10 507 101 0 13 chrX 38965343 38965422 -123634508 + LTR49 LTR ERV1 1 78 -517 1624 111 0 5 chrX 38965423 38965639 -123634291 + AluSq SINE Alu 1 215 -98 25 0 0 28 chrX 38965639 38965659 -123634271 + AT_rich Low_complexity Low_complexity 1 21 -14 324 0 0 0 chrX 38965659 38965695 -123634235 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 28 chrX 38965695 38965710 -123634220 + AT_rich Low_complexity Low_complexity 21 35 0 372 71 0 0 chrX 38965856 38965912 -123634018 + (TC)n Simple_repeat Simple_repeat 1 56 0 2228 123 0 0 chrX 38966045 38966345 -123633585 + AluSx SINE Alu 1 300 -12 1322 106 0 41 chrX 38966466 38966684 -123633246 + L1MA5A LINE L1 6089 6297 0 700 200 14 7 chrX 38967079 38967219 -123632711 + MER5B DNA MER1_type 1 141 -37 1062 114 6 12 chrX 38967219 38967385 -123632545 + L1MB7 LINE L1 6004 6168 -16 466 205 43 5 chrX 38967385 38967574 -123632356 + GA-rich Low_complexity Low_complexity 1 181 -349 2349 98 0 3 chrX 38967574 38967871 -123632059 + AluSg1 SINE Alu 1 296 -13 466 205 43 5 chrX 38967871 38967896 -123632034 + GA-rich Low_complexity Low_complexity 181 530 0 200 239 0 0 chrX 38967898 38967944 -123631986 + MER5B DNA MER1_type 133 178 0 2067 118 3 3 chrX 38968221 38968510 -123631420 + AluSx SINE Alu 1 289 -23 2221 100 10 0 chrX 38968618 38968907 -123631023 + AluSp SINE Alu 1 292 -21 1357 178 4 13 chrX 38969181 38969406 -123630524 - MER58A DNA MER1_type 0 224 2 1841 127 3 103 chrX 38970012 38970213 -123629717 - AluSp SINE Alu -8 305 150 2274 98 0 7 chrX 38970213 38970508 -123629422 - AluSq SINE Alu -20 293 1 1841 127 3 103 chrX 38970508 38970645 -123629285 - AluSp SINE Alu -163 150 1 1100 172 0 0 chrX 38970744 38970913 -123629017 + FRAM SINE Alu 5 173 -3 975 247 69 0 chrX 38971104 38971335 -123628595 + MER69 DNA AcHobo 1 247 -979 2442 89 0 0 chrX 38972014 38972316 -123627614 - AluSx SINE Alu -10 302 1 576 200 33 33 chrX 38972411 38972561 -123627369 + L1ME3 LINE L1 6012 6161 -1 574 83 31 31 chrX 38972943 38973039 -123626891 - AluSp/q SINE Alu -6 307 212 2387 91 0 7 chrX 38973327 38973636 -123626294 + AluSx SINE Alu 1 307 -5 2555 68 0 6 chrX 38973637 38973949 -123625981 + AluY SINE Alu 1 382 0 216 292 14 0 chrX 38973949 38974021 -123625909 + A-rich Low_complexity Low_complexity 3 180 0 1876 114 114 0 chrX 38974392 38974665 -123625265 - AluSx SINE Alu -8 304 1 4590 149 15 42 chrX 38974686 38974951 -123624979 - L1PB4 LINE L1 -96 6060 5789 1815 154 0 55 chrX 38974951 38975276 -123624654 - AluJo SINE Alu -5 307 1 4590 149 15 42 chrX 38975276 38975622 -123624308 - L1PB4 LINE L1 -367 5789 5435 2594 68 0 3 chrX 38975622 38975932 -123623998 + AluSc SINE Alu 1 309 0 4590 149 15 42 chrX 38975932 38976781 -123623149 - L1PB4 LINE L1 -721 5435 4624 2409 89 16 0 chrX 38976782 38977086 -123622844 - AluSx SINE Alu -3 309 1 391 229 29 81 chrX 38977179 38977389 -123622541 + L1MC4 LINE L1 7843 8041 -1 1933 143 14 4 chrX 38977505 38977810 -123622120 + AluSx SINE Alu 3 310 0 2293 85 3 57 chrX 38977829 38978160 -123621770 + AluSp SINE Alu 1 313 0 2254 93 3 3 chrX 38978304 38978593 -123621337 + AluSq SINE Alu 1 289 -24 1849 169 0 22 chrX 38978660 38978979 -123620951 - AluJo SINE Alu 0 312 1 23 33 0 0 chrX 38979061 38979091 -123620839 + AT_rich Low_complexity Low_complexity 1 30 0 2455 78 7 0 chrX 38979428 38979735 -123620195 - AluSg SINE Alu -1 309 1 1721 234 52 25 chrX 38979770 38980047 -123619883 + L1ME1 LINE L1 5383 5680 -486 2410 91 3 0 chrX 38980047 38980356 -123619574 + AluSx SINE Alu 1 310 -2 1721 234 52 25 chrX 38980356 38980560 -123619370 + L1ME1 LINE L1 5680 5877 -289 184 271 68 0 chrX 38980720 38980779 -123619151 - MIR3 SINE MIR -1 207 145 1867 132 14 7 chrX 38980985 38981294 -123618636 - AluSx SINE Alu 0 311 1 2420 75 0 7 chrX 38981309 38981615 -123618315 - AluY SINE Alu -1 310 7 831 158 79 24 chrX 38981849 38982013 -123617917 - AluJo SINE Alu -13 299 127 2054 104 0 98 chrX 38982078 38982414 -123617516 - AluSx SINE Alu -7 305 3 1521 148 0 35 chrX 38982876 38983106 -123616824 + AluSx SINE Alu 1 222 -90 1941 210 43 77 chrX 38983106 38983740 -123616190 - LTR9 LTR ERV1 0 612 1 325 132 0 19 chrX 38983816 38983869 -123616061 + Alu SINE Alu 242 293 -7 2299 100 3 3 chrX 38984042 38984351 -123615579 + AluSc SINE Alu 1 309 0 1670 121 83 7 chrX 38984523 38984812 -123615118 - AluSq SINE Alu -2 311 1 2453 68 0 0 chrX 38984925 38985219 -123614711 - AluY SINE Alu -17 294 1 2296 118 0 6 chrX 38985385 38985698 -123614232 - AluSq SINE Alu -2 311 1 2083 129 0 7 chrX 38985783 38986078 -123613852 + AluSx SINE Alu 1 293 -19 306 73 0 0 chrX 38986078 38986119 -123613811 + (TA)n Simple_repeat Simple_repeat 2 42 0 1045 166 34 53 chrX 38986153 38986418 -123613512 + L1MB4 LINE L1 5763 6022 -158 4041 181 88 32 chrX 38986421 38987231 -123612699 + MER21B LTR ERV1 3 863 0 716 137 36 65 chrX 38987242 38987410 -123612520 + L1MB4 LINE L1 6018 6180 0 4317 135 39 17 chrX 38987619 38988315 -123611615 - MER50 LTR ERV1 -23 711 1 945 271 74 17 chrX 38988468 38989091 -123610839 + L1MC/D LINE L1 4820 5491 -750 * 1106 215 83 3 chrX 38989088 38989376 -123610554 - L1M4 LINE L1 -2005 4141 3831 * 2772 210 66 40 chrX 38989374 38989841 -123610089 - L1MA9 LINE L1 -42 6270 5776 180 77 0 0 chrX 38989841 38989867 -123610063 + (TA)n Simple_repeat Simple_repeat 1 26 0 2772 210 66 40 chrX 38989867 38990142 -123609788 - L1MA9 LINE L1 -536 5776 5509 1875 189 3 6 chrX 38990153 38990465 -123609465 - AluJo SINE Alu -1 311 1 1176 250 24 62 chrX 38990465 38990573 -123609357 - L1M4 LINE L1 -2295 3851 3740 2525 84 3 0 chrX 38990573 38990884 -123609046 - AluSx SINE Alu 0 312 1 1176 250 24 62 chrX 38990884 38991166 -123608764 - L1M4 LINE L1 -2406 3740 3481 2492 78 3 0 chrX 38991166 38991475 -123608455 + AluSg SINE Alu 1 310 0 1176 250 24 62 chrX 38991475 38991579 -123608351 - L1M4 LINE L1 -2665 3481 3375 306 250 0 0 chrX 38991576 38991644 -123608286 + L1MC5 LINE L1 7051 7118 -843 * 866 133 0 0 chrX 38991682 38991802 -123608128 + FLAM_C SINE Alu 2 121 -12 1645 174 0 83 chrX 38991906 38992245 -123607685 + AluJo SINE Alu 1 311 -1 241 222 39 33 chrX 38992315 38993070 -123606860 + L1MC4 LINE L1 7261 8036 -6 2341 93 0 10 chrX 38993070 38993371 -123606559 + AluSc SINE Alu 1 298 -11 2178 102 24 0 chrX 38993447 38993741 -123606189 + AluSx SINE Alu 1 301 -11 2328 86 30 0 chrX 38994273 38994577 -123605353 - AluSp SINE Alu 0 313 1 498 259 62 16 chrX 38994703 38994896 -123605034 + HAL1 LINE L1 1391 1592 -915 360 107 4 0 chrX 38995019 38995075 -123604855 + Alu SINE Alu 1 44 -256 1420 123 0 0 chrX 38995077 38995272 -123604658 + AluSg/x SINE Alu 108 302 -8 2184 95 0 38 chrX 38995345 38995484 -123604446 + AluSx SINE Alu 1 144 -168 2271 102 7 7 chrX 38995484 38995788 -123604142 + AluSx SINE Alu 1 304 -8 2184 95 0 38 chrX 38995788 38995965 -123603965 + AluSx SINE Alu 144 305 -7 324 326 0 0 chrX 38996121 38996219 -123603711 - L1MDa LINE L1 -3999 2541 2444 390 249 95 83 chrX 38996480 38996693 -123603237 + LTR16A1 LTR ERVL 1 219 -238 2092 83 49 3 chrX 38996693 38996981 -123602949 + AluSg SINE Alu 2 302 -8 390 249 95 83 chrX 38996981 38997020 -123602910 + LTR16A1 LTR ERVL 219 256 -201 330 129 0 86 chrX 38997023 38997093 -123602837 - MLT1D LTR MaLR -2 503 440 906 208 115 67 chrX 38997097 38997366 -123602564 + AluJo SINE Alu 1 282 -30 25 0 0 0 chrX 38997366 38997391 -123602539 + AT_rich Low_complexity Low_complexity 1 25 0 1788 204 68 19 chrX 38997399 38997825 -123602105 - MLT1D LTR MaLR -58 447 1 300 258 0 0 chrX 38997825 38997891 -123602039 + LTR16A1 LTR ERVL 253 318 -139 2152 107 0 32 chrX 38997918 38998228 -123601702 + AluSx SINE Alu 2 301 -11 2313 93 3 10 chrX 38998486 38998786 -123601144 - AluSx SINE Alu -14 298 1 344 277 62 0 chrX 38998930 38999060 -123600870 - L1ME4a LINE L1 0 6121 5984 1120 167 0 0 chrX 38999187 38999355 -123600575 + FAM SINE Alu 1 168 -7 246 287 58 0 chrX 38999417 38999551 -123600379 + HAL1b LINE L1 840 2371 -136 52 30 0 0 chrX 38999650 38999716 -123600214 + AT_rich Low_complexity Low_complexity 1 66 0 642 116 0 147 chrX 38999735 38999864 -123600066 - FLAM_C SINE Alu -32 111 2 27 0 0 0 chrX 38999867 38999894 -123600036 + AT_rich Low_complexity Low_complexity 1 27 0 1150 47 0 0 chrX 39000148 39000277 -123599653 + AluY SINE Alu 1 129 -182 2094 107 11 0 chrX 39000480 39000791 -123599139 - AluSx SINE Alu 0 314 1 2465 63 0 32 chrX 39001707 39002022 -123597908 + AluY SINE Alu 1 305 -6 2403 100 0 3 chrX 39002880 39003190 -123596740 + AluSx SINE Alu 1 309 -3 1565 168 118 1 chrX 39003905 39004235 -123595695 + L1MB4 LINE L1 5813 6179 -1 449 245 64 64 chrX 39004640 39004828 -123595102 + L1MC4 LINE L1 7471 7658 -384 1544 156 86 0 chrX 39004848 39005104 -123594826 - AluJo SINE Alu -33 279 2 1881 138 34 10 chrX 39005188 39005485 -123594445 + AluJo SINE Alu 1 304 -8 993 139 0 45 chrX 39005531 39005759 -123594171 + AluJb SINE Alu 1 312 0 2282 94 0 3 chrX 39005765 39006062 -123593868 + AluSg SINE Alu 1 296 -14 623 236 80 34 chrX 39006122 39006359 -123593571 + L1MC4 LINE L1 7795 8042 0 26 50 0 0 chrX 39006459 39006499 -123593431 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chrX 39006986 39007007 -123592923 + AT_rich Low_complexity Low_complexity 1 21 0 184 303 189 51 chrX 39007118 39007293 -123592637 - L2 LINE L2 -1 3312 3114 22 70 0 0 chrX 39007390 39007433 -123592497 + AT_rich Low_complexity Low_complexity 1 43 0 2550 53 3 0 chrX 39008310 39008610 -123591320 - AluY SINE Alu -9 302 2 757 132 26 0 chrX 39009478 39009592 -123590338 - FLAM_C SINE Alu -26 117 1 30 0 0 0 chrX 39009907 39009937 -123589993 + AT_rich Low_complexity Low_complexity 1 30 0 2144 122 0 0 chrX 39009940 39010226 -123589704 + AluSx SINE Alu 1 286 -26 1656 139 14 48 chrX 39010250 39010544 -123589386 + AluSx SINE Alu 1 284 -28 439 106 30 0 chrX 39010478 39010544 -123589386 + AluSg/x SINE Alu 215 304 0 199 0 0 0 chrX 39010544 39010566 -123589364 + (TAAA)n Simple_repeat Simple_repeat 2 120 0 1875 156 7 3 chrX 39010576 39010865 -123589065 + AluJo SINE Alu 1 290 -22 535 114 0 49 chrX 39010865 39010988 -123588942 + (CA)n Simple_repeat Simple_repeat 1 117 0 601 238 7 66 chrX 39011017 39011168 -123588762 - HAL1 LINE L1 -1708 799 658 664 185 39 135 chrX 39011171 39011382 -123588548 + HAL1 LINE L1 772 955 -1552 351 0 0 0 chrX 39011382 39011421 -123588509 + (CA)n Simple_repeat Simple_repeat 2 40 0 664 185 39 135 chrX 39011421 39011468 -123588462 + HAL1 LINE L1 955 1005 -1502 954 110 144 0 chrX 39011468 39011641 -123588289 + L1MC3 LINE L1 6901 7098 -687 335 217 33 11 chrX 39011642 39011729 -123588201 + MLT1F1 LTR MaLR 37 126 -437 2089 130 7 3 chrX 39011729 39012030 -123587900 + AluSx SINE Alu 1 302 -10 209 176 0 20 chrX 39012137 39012174 -123587756 + (TA)n Simple_repeat Simple_repeat 2 39 -12 2325 92 3 0 chrX 39012174 39012468 -123587462 - AluSq SINE Alu -18 295 1 209 176 0 20 chrX 39012468 39012481 -123587449 + (TA)n Simple_repeat Simple_repeat 39 51 0 2585 68 3 0 chrX 39012964 39013274 -123586656 + AluY SINE Alu 1 311 0 2084 123 6 25 chrX 39013398 39013716 -123586214 + AluJb SINE Alu 1 312 0 283 180 33 0 chrX 39013722 39013783 -123586147 + HAL1 LINE L1 1120 1182 -1325 690 118 126 34 chrX 39013841 39013960 -123585970 + AluJo SINE Alu 10 139 -173 1951 227 144 79 chrX 39013966 39014481 -123585449 + HAL1 LINE L1 1167 1647 -860 1902 139 17 3 chrX 39014481 39014782 -123585148 + AluJo SINE Alu 1 305 -7 1951 227 144 79 chrX 39014782 39015002 -123584928 + HAL1 LINE L1 1647 1851 -656 2392 89 0 10 chrX 39015002 39015316 -123584614 + AluY SINE Alu 1 311 0 2486 86 0 3 chrX 39015320 39015633 -123584297 + AluSq SINE Alu 1 312 -1 2194 92 0 48 chrX 39015640 39015954 -123583976 + AluSg SINE Alu 1 299 -11 1951 227 144 79 chrX 39015954 39016463 -123583467 + HAL1 LINE L1 1858 2507 0 2093 106 3 11 chrX 39017591 39017898 -123582032 - AluSq SINE Alu 0 307 3 241 236 189 31 chrX 39018347 39018474 -123581456 + L1MC5 LINE L1 7754 7900 -61 1304 154 36 22 chrX 39018911 39019288 -123580642 + MLT1C LTR MaLR 6 380 -48 2186 107 3 0 chrX 39019293 39019583 -123580347 - AluSx SINE Alu -21 291 1 317 24 24 0 chrX 39020022 39020064 -123579866 + (TG)n Simple_repeat Simple_repeat 2 44 0 2009 162 41 62 chrX 39022856 39023240 -123576690 + MER31B LTR ERV1 1 375 -91 1777 157 3 7 chrX 39023240 39023533 -123576397 - AluJo SINE Alu -20 292 1 2009 162 41 62 chrX 39023533 39023616 -123576314 + MER31B LTR ERV1 375 458 -8 2264 91 3 26 chrX 39023924 39024232 -123575698 - AluSx SINE Alu -11 301 1 284 68 45 0 chrX 39024578 39024622 -123575308 + MADE1 DNA Mariner 35 80 0 4759 66 3 0 chrX 39024976 39025565 -123574365 - LTR10C LTR ERV1 0 591 1 2243 92 0 3 chrX 39025647 39025930 -123574000 + AluSp SINE Alu 1 282 -31 180 0 0 0 chrX 39025934 39025954 -123573976 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2184 94 0 17 chrX 39025959 39026269 -123573661 + AluSx SINE Alu 1 305 0 4583 116 35 70 chrX 39026712 39026953 -123572977 - MER4E LTR ERV1 0 779 531 1624 116 0 0 chrX 39026953 39027168 -123572762 + AluSg/x SINE Alu 92 306 -6 4583 116 35 70 chrX 39027168 39027734 -123572196 - MER4E LTR ERV1 -248 531 1 1359 129 174 34 chrX 39027769 39027906 -123572024 + AluJb SINE Alu 2 118 -184 1996 142 0 3 chrX 39027906 39028208 -123571722 + AluSx SINE Alu 1 301 -11 1359 129 174 34 chrX 39028208 39028334 -123571596 + AluJb SINE Alu 118 302 0 213 237 0 17 chrX 39028680 39028739 -123571191 + A-rich Low_complexity Low_complexity 3 60 0 5178 75 7 24 chrX 39028785 39028938 -123570992 + LTR8 LTR ERV1 1 155 -536 2005 110 3 38 chrX 39028938 39029263 -123570667 + AluSx SINE Alu 1 315 0 5178 75 7 24 chrX 39029263 39029645 -123570285 + LTR8 LTR ERV1 155 525 -166 2285 101 7 0 chrX 39029645 39029953 -123569977 + AluSq SINE Alu 1 310 -3 5178 75 7 24 chrX 39029953 39030118 -123569812 + LTR8 LTR ERV1 525 691 0 1844 162 3 3 chrX 39030268 39030565 -123569365 + AluJo SINE Alu 6 302 -10 2154 130 198 7 chrX 39030580 39030787 -123569143 + LTR54 LTR ERV1 6 172 -338 2355 98 7 0 chrX 39030787 39031094 -123568836 - AluSx SINE Alu -1 311 3 2154 130 198 7 chrX 39031094 39031310 -123568620 + LTR54 LTR ERV1 172 510 0 1985 119 7 10 chrX 39031692 39031848 -123568082 - AluSx SINE Alu -19 293 137 2620 44 0 0 chrX 39031848 39032145 -123567785 - AluY SINE Alu -14 297 1 1985 119 7 10 chrX 39032145 39032282 -123567648 - AluSx SINE Alu -175 137 1 683 253 95 5 chrX 39032832 39033022 -123566908 - MER58C DNA MER1_type -8 207 1 393 103 0 0 chrX 39033022 39033080 -123566850 - MER4E LTR ERV1 0 779 722 398 76 136 0 chrX 39033082 39033148 -123566782 - MER4A LTR ERV1 -589 75 1 3949 121 72 32 chrX 39033149 39033829 -123566101 - MER4D LTR ERV1 -196 707 1 1706 158 13 26 chrX 39034042 39034346 -123565584 - AluJb SINE Alu -12 300 1 2292 96 10 0 chrX 39034519 39034811 -123565119 + AluSg SINE Alu 1 295 -15 3902 171 30 10 chrX 39034855 39035134 -123564796 + MER72 LTR ERV1 5 277 -445 2301 110 7 0 chrX 39035134 39035433 -123564497 + AluSq SINE Alu 1 301 -12 3902 171 30 10 chrX 39035433 39035857 -123564073 + MER72 LTR ERV1 277 722 0 312 269 0 32 chrX 39035982 39036075 -123563855 - L2 LINE L2 0 3313 3224 2215 184 23 113 chrX 39036099 39036456 -123563474 - MLT2B3 LTR ERVL 0 554 273 2163 131 0 13 chrX 39036456 39036762 -123563168 + AluSx SINE Alu 1 302 -10 2215 184 23 113 chrX 39036762 39037013 -123562917 - MLT2B3 LTR ERVL -281 273 1 2029 125 3 17 chrX 39037215 39037532 -123562398 - AluSx SINE Alu 0 312 1 2274 106 0 6 chrX 39037547 39037859 -123562071 - AluSg SINE Alu 0 310 1 1151 82 0 0 chrX 39037859 39037994 -123561936 - AluSq/x SINE Alu -178 135 1 1438 190 0 16 chrX 39038020 39038273 -123561657 - MER72 LTR ERV1 -469 253 5 884 136 157 0 chrX 39038317 39038464 -123561466 - AluSg/x SINE Alu -6 304 135 1466 142 59 139 chrX 39038591 39038945 -123560985 + MLT1B LTR MaLR 1 318 -72 1934 131 11 3 chrX 39038945 39039267 -123560663 - AluSx SINE Alu 0 324 1 1466 142 59 139 chrX 39039267 39039335 -123560595 + MLT1B LTR MaLR 318 390 0 2307 92 0 0 chrX 39039738 39040057 -123559873 - AluSx SINE Alu 0 319 1 2143 87 3 14 chrX 39040308 39040621 -123559309 + AluSx SINE Alu 1 310 0 226 344 106 19 chrX 39040627 39040787 -123559143 + L1ME LINE L1 5481 5654 -467 857 137 0 0 chrX 39040789 39040913 -123559017 + FLAM_C SINE Alu 3 126 -7 249 57 0 0 chrX 39040920 39040955 -123558975 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2281 112 3 0 chrX 39040977 39041289 -123558641 + AluSq SINE Alu 1 313 0 919 146 44 0 chrX 39041320 39041478 -123558452 + L1PA16 LINE L1 6000 6164 -2 26 0 0 0 chrX 39041491 39041517 -123558413 + AT_rich Low_complexity Low_complexity 1 26 0 2299 99 3 0 chrX 39041717 39042019 -123557911 + AluSx SINE Alu 1 303 -9 1907 153 0 0 chrX 39042090 39042395 -123557535 - AluJo SINE Alu 0 305 1 398 332 42 53 chrX 39042565 39042926 -123557004 + L1MC4a LINE L1 4675 5031 -1115 2136 103 0 42 chrX 39042927 39043239 -123556691 + AluY SINE Alu 2 300 -11 1398 95 0 0 chrX 39043239 39043411 -123556519 + AluSg/x SINE Alu 134 308 -4 2208 106 30 3 chrX 39043411 39043712 -123556218 + AluSg1 SINE Alu 1 309 0 435 241 117 28 chrX 39043802 39044131 -123555799 + L1MC4a LINE L1 5127 5491 -743 668 218 12 24 chrX 39044163 39044328 -123555602 + L1MC4a LINE L1 5687 5849 -1959 485 122 0 3 chrX 39044383 39044615 -123555315 + AluSx SINE Alu 1 297 -12 22 0 0 0 chrX 39044672 39044694 -123555236 + AT_rich Low_complexity Low_complexity 1 22 0 732 169 39 8 chrX 39044694 39044824 -123555106 - AluSq/x SINE Alu -177 135 2 2502 67 0 7 chrX 39044832 39045130 -123554800 - AluSc SINE Alu -13 296 1 2732 26 3 0 chrX 39045141 39045447 -123554483 - AluY SINE Alu -4 307 1 401 71 95 71 chrX 39045449 39045533 -123554397 - L1MB8 LINE L1 0 6178 6093 2500 146 46 72 chrX 39045552 39045910 -123554020 - L1MB4 LINE L1 -6 6174 5833 1724 128 4 0 chrX 39045910 39046159 -123553771 - AluSx SINE Alu -62 250 1 2500 146 46 72 chrX 39046159 39046326 -123553604 - L1MB4 LINE L1 -347 5833 5663 1852 105 79 0 chrX 39046416 39046682 -123553248 + AluSq SINE Alu 3 289 -24 2626 47 0 0 chrX 39047446 39047745 -123552185 + AluY SINE Alu 1 299 -12 2232 111 3 0 chrX 39048332 39048630 -123551300 + AluSx SINE Alu 1 299 -13 800 159 0 8 chrX 39048664 39048790 -123551140 - FLAM_C SINE Alu -8 125 1 2170 129 0 0 chrX 39049207 39049509 -123550421 + AluSx SINE Alu 1 302 -10 2248 99 13 3 chrX 39049528 39049831 -123550099 + AluSx SINE Alu 1 306 -6 2088 102 21 11 chrX 39051297 39051580 -123548350 + AluSg SINE Alu 5 290 -20 2189 128 0 0 chrX 39051696 39051994 -123547936 + AluSg SINE Alu 1 298 -12 269 130 22 0 chrX 39052020 39052066 -123547864 - MER41A LTR ERV1 0 554 508 1356 206 137 49 chrX 39052086 39052575 -123547355 - LTR10B LTR ERV1 -3 544 13 934 107 43 0 chrX 39052593 39052733 -123547197 - MER41A LTR ERV1 -43 511 366 1165 90 0 0 chrX 39052733 39052888 -123547042 - AluSg/x SINE Alu 0 312 158 2071 101 25 11 chrX 39052892 39053178 -123546752 - AluSx SINE Alu -22 290 1 2091 89 0 24 chrX 39053178 39053471 -123546459 - MER41A LTR ERV1 -185 369 84 627 180 0 9 chrX 39053471 39053582 -123546348 - AluJ SINE Alu -68 244 135 815 87 36 80 chrX 39053582 39053720 -123546210 - AluJ SINE Alu -170 132 1 414 244 272 22 chrX 39053724 39053904 -123546026 + MIR SINE MIR 21 245 -17 2242 109 3 0 chrX 39053907 39054201 -123545729 + AluSx SINE Alu 1 295 -17 2147 125 3 0 chrX 39054724 39055019 -123544911 - AluSx SINE Alu -16 296 1 9320 79 19 130 chrX 39055551 39055836 -123544094 + Tigger1 DNA MER2_type 2 317 -2101 2492 84 0 0 chrX 39055836 39056144 -123543786 - AluSq SINE Alu -5 308 1 9320 79 19 130 chrX 39056144 39056221 -123543709 + Tigger1 DNA MER2_type 317 401 -2017 2103 116 3 31 chrX 39056221 39056541 -123543389 - AluSq SINE Alu -2 311 1 9320 79 19 130 chrX 39056541 39057731 -123542199 + Tigger1 DNA MER2_type 401 1721 -697 2329 116 0 0 chrX 39057731 39058041 -123541889 - AluSg SINE Alu 0 310 1 9320 79 19 130 chrX 39058041 39058069 -123541861 + Tigger1 DNA MER2_type 1721 1395 -1023 2087 84 0 0 chrX 39058069 39058320 -123541610 - AluSc SINE Alu -58 251 1 9320 79 19 130 chrX 39058320 39058400 -123541530 + Tigger1 DNA MER2_type 1394 1481 -937 2046 125 3 3 chrX 39058400 39058727 -123541203 + AluSp SINE Alu 1 313 0 2344 101 0 0 chrX 39058736 39059044 -123540886 + AluSg SINE Alu 1 308 -2 914 138 66 30 chrX 39059071 39059238 -123540692 + FAM SINE Alu 1 46 -3 5922 133 20 5 chrX 39059246 39059734 -123540196 + Tigger1 DNA MER2_type 1465 1975 -443 2083 123 0 16 chrX 39059734 39060051 -123539879 - AluSx SINE Alu 0 312 1 5922 133 20 5 chrX 39060051 39060502 -123539428 + Tigger1 DNA MER2_type 1975 2418 0 195 42 0 0 chrX 39060506 39060530 -123539400 + (TATATG)n Simple_repeat Simple_repeat 5 28 0 2089 145 0 13 chrX 39060686 39060997 -123538933 + AluJo SINE Alu 1 307 -5 2259 116 3 0 chrX 39061038 39061332 -123538598 + AluSx SINE Alu 2 296 -16 208 0 0 0 chrX 39061433 39061456 -123538474 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2249 99 0 0 chrX 39061456 39061738 -123538192 - AluSg SINE Alu -28 282 1 207 0 0 0 chrX 39061745 39061768 -123538162 + (T)n Simple_repeat Simple_repeat 1 23 0 2850 75 13 5 chrX 39061791 39062163 -123537767 + THE1C LTR MaLR 1 375 0 10593 113 33 12 chrX 39062164 39063522 -123536408 + THE1C-int LTR MaLR 2 1398 -182 2232 122 0 3 chrX 39063522 39063825 -123536105 + AluSq SINE Alu 1 302 -11 10593 113 33 12 chrX 39063825 39064012 -123535918 + THE1C-int LTR MaLR 1398 1580 0 2334 91 18 35 chrX 39064027 39064148 -123535782 + THE1C LTR MaLR 41 163 -212 2073 142 7 0 chrX 39064148 39064451 -123535479 - AluSx SINE Alu -7 305 1 2334 91 18 35 chrX 39064451 39064670 -123535260 + THE1C LTR MaLR 163 375 0 1224 233 43 16 chrX 39064847 39065175 -123534755 + MLT1E LTR MaLR 1 439 -154 1636 170 66 10 chrX 39065175 39065463 -123534467 + AluJo SINE Alu 3 306 -6 1224 233 43 16 chrX 39065463 39065617 -123534313 + MLT1E LTR MaLR 439 587 -6 1486 211 43 56 chrX 39065623 39065934 -123533996 + MLT1E-int LTR MaLR 1 315 -1056 2199 134 3 0 chrX 39065934 39066241 -123533689 - AluSx SINE Alu -4 308 1 1486 211 43 56 chrX 39066241 39066455 -123533475 + MLT1E-int LTR MaLR 315 638 -733 1974 117 35 90 chrX 39066507 39066797 -123533133 - MER7A DNA MER2_type -2692 346 42 1468 183 17 31 chrX 39066797 39067086 -123532844 - AluJo SINE Alu -10 302 18 1974 117 35 90 chrX 39067086 39067105 -123532825 - MER7A DNA MER2_type -2996 42 24 2177 114 0 35 chrX 39067105 39067276 -123532654 - AluSx SINE Alu -8 304 147 2411 78 0 7 chrX 39067276 39067572 -123532358 - AluSc SINE Alu -15 294 1 2177 114 0 35 chrX 39067572 39067715 -123532215 - AluSx SINE Alu -165 147 1 1974 117 35 90 chrX 39067715 39067771 -123532159 - MER7A DNA MER2_type -3014 24 2 269 265 59 0 chrX 39068006 39068074 -123531856 + MLT1E-int LTR MaLR 820 891 -480 286 241 0 0 chrX 39068176 39068234 -123531696 + MLT1E-int LTR MaLR 962 1019 -352 2303 103 0 3 chrX 39068264 39068564 -123531366 - AluSx SINE Alu -13 299 1 455 144 9 90 chrX 39068604 39068715 -123531215 + MLT1F LTR MaLR 441 542 0 2155 115 0 26 chrX 39068796 39069109 -123530821 + AluSx SINE Alu 1 305 -7 1375 137 208 8 chrX 39069109 39069350 -123530580 + AluSg1 SINE Alu 1 289 -20 2281 101 7 7 chrX 39069410 39069718 -123530212 - AluSg SINE Alu 0 310 3 282 238 19 19 chrX 39069760 39069891 -123530039 - L1M3 LINE L1 -366 5798 5726 270 0 43 43 chrX 39069891 39069938 -123529992 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 832 216 5 26 chrX 39069940 39069986 -123529944 - AluJb SINE Alu -2 310 265 4873 90 16 42 chrX 39069986 39070521 -123529409 + LTR8 LTR ERV1 1 549 -142 2419 79 0 0 chrX 39070521 39070812 -123529118 + AluSg SINE Alu 1 291 -19 2320 107 3 0 chrX 39070822 39071130 -123528800 + AluSp SINE Alu 1 309 -4 4873 90 16 42 chrX 39071130 39071293 -123528637 + LTR8 LTR ERV1 558 691 0 832 216 5 26 chrX 39071293 39071436 -123528494 - AluJb SINE Alu -47 265 125 968 142 0 0 chrX 39071450 39071591 -123528339 - FLAM_C SINE Alu 0 143 3 2133 121 14 0 chrX 39071648 39071945 -123527985 - AluSx SINE Alu -11 301 1 682 240 47 0 chrX 39071947 39072097 -123527833 - MER63 DNA MER1_type -279 783 1 428 237 92 16 chrX 39072122 39072345 -123527585 - L1M3 LINE L1 -462 5659 5423 * 458 222 27 97 chrX 39072342 39072527 -123527403 - L1MA10 LINE L1 -1 6333 6162 1135 139 25 64 chrX 39072530 39072574 -123527356 - MLT1A1 LTR MaLR 0 365 321 2520 61 0 3 chrX 39072574 39072870 -123527060 + AluY SINE Alu 1 295 -16 1135 139 25 64 chrX 39072870 39073027 -123526903 - MLT1A1 LTR MaLR -44 321 172 832 137 7 52 chrX 39073032 39073185 -123526745 + Ricksha DNA DNA 202 347 -2899 1416 141 0 41 chrX 39073185 39073405 -123526525 + MLT2B2 LTR ERVL 1 211 -304 468 0 0 0 chrX 39073409 39073461 -123526469 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 270 150 0 0 chrX 39073469 39073509 -123526421 + AluS SINE Alu 232 271 -31 677 149 6 0 chrX 39073511 39073686 -123526244 + (TA)n Simple_repeat Simple_repeat 2 177 0 327 25 0 0 chrX 39073688 39073728 -123526202 + (CA)n Simple_repeat Simple_repeat 2 41 0 597 143 10 0 chrX 39073728 39073826 -123526104 - AluJ/FLAM SINE Alu -211 101 3 1894 176 49 42 chrX 39073828 39074255 -123525675 - L1ME1 LINE L1 -340 5826 5397 570 120 9 65 chrX 39074282 39074390 -123525540 - AluJo SINE Alu -91 221 120 1415 165 70 6 chrX 39074390 39074706 -123525224 - L1ME1 LINE L1 -761 5385 5050 1316 203 69 74 chrX 39074744 39074837 -123525093 + L1MEc LINE L1 1543 1635 -4761 2259 70 0 0 chrX 39074837 39075108 -123524822 + AluSg SINE Alu 31 301 -9 1316 203 69 74 chrX 39075108 39075185 -123524745 + L1MEc LINE L1 1635 1711 -4685 1509 153 0 0 chrX 39075185 39075408 -123524522 + AluJb SINE Alu 85 307 -5 1316 203 69 74 chrX 39075408 39075500 -123524430 + L1MEc LINE L1 1711 1802 -4594 1648 216 84 53 chrX 39075500 39075559 -123524371 - MLT1D LTR MaLR 0 505 449 2111 98 7 39 chrX 39075559 39075865 -123524065 - AluSx SINE Alu -16 296 1 1648 216 84 53 chrX 39075865 39076295 -123523635 - MLT1D LTR MaLR -56 449 1 1316 203 69 74 chrX 39076295 39076464 -123523466 + L1MEc LINE L1 1802 1974 -4422 26 30 0 0 chrX 39076476 39076509 -123523421 + AT_rich Low_complexity Low_complexity 1 33 0 270 174 0 0 chrX 39076519 39076565 -123523365 + MSTA LTR MaLR 1 46 -382 1557 138 23 112 chrX 39076570 39076918 -123523012 - AluYb8 SINE Alu -1 317 1 1056 90 0 0 chrX 39076942 39077075 -123522855 - AluSq/x SINE Alu -180 133 1 424 192 0 0 chrX 39077077 39077150 -123522780 + MSTA LTR MaLR 38 110 -318 * 901 97 152 0 chrX 39077145 39077290 -123522640 + MSTA LTR MaLR 250 416 -12 734 160 0 17 chrX 39077290 39077409 -123522521 - FLAM_C SINE Alu -25 118 2 1734 195 0 0 chrX 39077595 39077892 -123522038 + AluJb SINE Alu 1 297 -15 281 289 199 21 chrX 39077893 39078184 -123521746 - L1ME LINE L1 -563 5599 5257 1911 118 0 0 chrX 39078222 39078477 -123521453 + AluSq SINE Alu 1 255 -58 2288 110 3 0 chrX 39078490 39078791 -123521139 + AluSp SINE Alu 1 302 -11 1939 129 18 7 chrX 39078861 39079147 -123520783 - AluJb SINE Alu -13 299 11 333 293 100 46 chrX 39079251 39079592 -123520338 - L1ME1 LINE L1 -1118 5028 4658 227 235 41 41 chrX 39079656 39079734 -123520196 + L2 LINE L2 2752 2829 -485 1968 127 0 33 chrX 39079734 39079896 -123520034 - AluSx SINE Alu -22 290 124 232 47 23 23 chrX 39079896 39079939 -123519991 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2074 119 0 3 chrX 39079939 39080224 -123519706 - AluSx SINE Alu -28 284 1 1968 127 0 33 chrX 39080224 39080360 -123519570 - AluSx SINE Alu -186 126 1 227 235 41 41 chrX 39080360 39080379 -123519551 + L2 LINE L2 2828 2849 -465 243 244 23 23 chrX 39080394 39080480 -123519450 - L1ME1 LINE L1 -1488 4658 4573 867 90 0 0 chrX 39080507 39080629 -123519301 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1277 139 0 14 chrX 39080631 39080839 -123519091 - AluY SINE Alu -2 309 105 270 256 98 0 chrX 39080869 39080951 -123518979 + L1MC4 LINE L1 6614 6703 -1339 270 256 98 0 chrX 39080973 39081055 -123518875 + L1MC4 LINE L1 6614 6703 -1339 206 133 0 44 chrX 39081055 39081100 -123518830 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 258 296 23 0 chrX 39081103 39081191 -123518739 + L1MC4 LINE L1 6614 6703 -1339 838 199 12 18 chrX 39081203 39081544 -123518386 + (TATATG)n Simple_repeat Simple_repeat 1 339 0 229 289 0 0 chrX 39081545 39081597 -123518333 + (TATG)n Simple_repeat Simple_repeat 4 55 0 230 289 0 22 chrX 39081597 39081687 -123518243 + L1MC4 LINE L1 6614 6701 -1341 228 250 0 14 chrX 39081689 39081761 -123518169 + L1MCa LINE L1 1997 2067 -4359 226 296 99 0 chrX 39081713 39081794 -123518136 - L1MC4 LINE L1 -1339 6703 6615 * 228 237 0 65 chrX 39081802 39081895 -123518035 - L1MC4 LINE L1 -1342 6700 6614 595 209 26 0 chrX 39081900 39082053 -123517877 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 416 224 64 24 chrX 39082143 39082268 -123517662 - Charlie4 DNA MER1_type -1815 146 17 2260 77 0 3 chrX 39082445 39082730 -123517200 - AluSx SINE Alu -19 293 10 2254 99 3 20 chrX 39082891 39083194 -123516736 + AluSp SINE Alu 1 298 -15 2303 97 0 0 chrX 39083226 39083516 -123516414 + AluSx SINE Alu 1 290 -22 243 146 0 0 chrX 39083691 39083732 -123516198 + (TA)n Simple_repeat Simple_repeat 1 41 0 1238 135 0 0 chrX 39083732 39083910 -123516020 - AluSg/x SINE Alu -5 307 130 496 311 91 28 chrX 39084036 39084265 -123515665 - L1M4 LINE L1 -1832 4314 4048 1963 130 13 19 chrX 39084265 39084573 -123515357 + AluSx SINE Alu 1 306 -6 496 311 91 28 chrX 39084573 39084739 -123515191 - L1M4 LINE L1 -2098 4048 3894 868 148 0 0 chrX 39084761 39084883 -123515047 - FLAM_C SINE Alu -21 122 1 335 356 0 5 chrX 39084887 39085081 -123514849 - L1M4 LINE L1 -2265 3881 3689 398 249 76 93 chrX 39085320 39085545 -123514385 - L1M4 LINE L1 -2697 3449 3229 2051 115 0 33 chrX 39086152 39086457 -123513473 + AluSx SINE Alu 1 295 -17 213 284 62 25 chrX 39086515 39086596 -123513334 + L2 LINE L2 3160 3243 -29 261 284 0 0 chrX 39086606 39086673 -123513257 - MIR SINE MIR -2 260 194 946 148 9 83 chrX 39086720 39086866 -123513064 + L1MB2 LINE L1 5957 6081 -90 2309 96 0 0 chrX 39086866 39087157 -123512773 - AluSg SINE Alu -18 292 2 946 148 9 83 chrX 39087157 39087240 -123512690 + L1MB2 LINE L1 6081 6169 -2 1108 167 21 54 chrX 39087264 39087345 -123512585 + L1MB2 LINE L1 5423 5505 -663 2225 86 0 92 chrX 39087345 39087682 -123512248 + AluSq SINE Alu 1 306 -7 1108 167 21 54 chrX 39087682 39087840 -123512090 + L1MB2 LINE L1 5505 5654 -514 239 167 0 0 chrX 39087865 39087901 -123512029 - tRNA-Tyr-TAC tRNA tRNA -39 37 2 432 159 0 0 chrX 39087901 39087978 -123511952 + L1MB2 LINE L1 5655 5731 -437 314 98 0 0 chrX 39087979 39088020 -123511910 - MSTA LTR MaLR 0 428 388 1056 117 0 0 chrX 39088020 39088157 -123511773 + AluSq/x SINE Alu 1 137 -176 2062 133 3 22 chrX 39088158 39088474 -123511456 + AluSq SINE Alu 3 312 -1 1247 172 27 99 chrX 39088484 39088816 -123511114 + AluSq SINE Alu 1 308 -5 1669 119 45 48 chrX 39088818 39088869 -123511061 + L1MB2 LINE L1 5781 5831 -340 2282 123 0 0 chrX 39088869 39089179 -123510751 + AluSx SINE Alu 1 310 -2 1669 119 45 48 chrX 39089179 39089377 -123510553 + L1MB2 LINE L1 5831 6031 -140 2280 92 3 0 chrX 39089377 39089669 -123510261 - AluSq SINE Alu -20 293 1 1669 119 45 48 chrX 39089669 39089728 -123510202 + L1MB2 LINE L1 6031 6089 -82 722 104 0 0 chrX 39089757 39089853 -123510077 - AluS SINE Alu -212 100 5 1102 140 0 17 chrX 39089865 39090043 -123509887 - AluSg/x SINE Alu -2 308 134 947 194 162 35 chrX 39090043 39090358 -123509572 + MLT1D LTR MaLR 147 501 -4 739 189 15 0 chrX 39090621 39090753 -123509177 + AluJo SINE Alu 2 135 -177 730 132 0 0 chrX 39090960 39091066 -123508864 + FLAM_C SINE Alu 21 126 -17 1773 133 0 104 chrX 39091366 39091478 -123508452 + AluJo SINE Alu 1 123 -189 2183 122 6 6 chrX 39091478 39091790 -123508140 - AluSp SINE Alu -1 312 1 1773 133 0 104 chrX 39091790 39091810 -123508120 + AluJo SINE Alu 123 143 -169 2565 75 0 0 chrX 39091810 39092116 -123507814 - AluSg SINE Alu -4 306 1 2204 136 0 0 chrX 39092122 39092432 -123507498 - AluSx SINE Alu -2 310 1 1773 133 0 104 chrX 39092432 39092459 -123507471 + AluJo SINE Alu 148 176 -136 2368 75 17 0 chrX 39092459 39092751 -123507179 + AluSp SINE Alu 1 297 -16 1773 133 0 104 chrX 39092751 39092928 -123507002 + AluJo SINE Alu 176 310 -2 2327 90 0 0 chrX 39093002 39093291 -123506639 - AluSc SINE Alu -20 289 1 1400 116 5 0 chrX 39093746 39093935 -123505995 - AluJo SINE Alu -114 198 9 1981 121 62 0 chrX 39094075 39094365 -123505565 + AluSg SINE Alu 1 308 -2 2183 86 10 7 chrX 39094451 39094742 -123505188 + AluSp SINE Alu 1 292 -21 246 32 0 0 chrX 39094745 39094776 -123505154 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 192 77 0 0 chrX 39095240 39095266 -123504664 + (CAAAG)n Simple_repeat Simple_repeat 2 27 0 530 143 0 12 chrX 39095334 39095418 -123504512 - AluJ/FLAM SINE Alu -228 84 2 1692 141 0 85 chrX 39095454 39095582 -123504348 + AluJo SINE Alu 1 138 -174 2342 86 0 7 chrX 39095582 39095874 -123504056 - AluSx SINE Alu -22 290 1 1692 141 0 85 chrX 39095874 39096064 -123503866 + AluJo SINE Alu 138 292 -20 366 23 0 0 chrX 39096176 39096219 -123503711 + (TG)n Simple_repeat Simple_repeat 2 44 0 1506 143 0 5 chrX 39096252 39096476 -123503454 - AluJo SINE Alu -89 223 1 26 0 0 0 chrX 39096596 39096622 -123503308 + AT_rich Low_complexity Low_complexity 1 26 0 1232 161 83 0 chrX 39097024 39097229 -123502701 + AluJb SINE Alu 1 222 -90 21 0 0 0 chrX 39097253 39097274 -123502656 + AT_rich Low_complexity Low_complexity 1 21 0 476 179 43 79 chrX 39097535 39097642 -123502288 - L1MC/D LINE L1 -2000 5808 5706 1520 132 0 152 chrX 39097642 39097984 -123501946 + AluY SINE Alu 5 294 -17 476 179 43 79 chrX 39097984 39098016 -123501914 - L1MC/D LINE L1 -2102 5706 5674 616 115 0 185 chrX 39098047 39098204 -123501726 - FLAM_C SINE Alu -11 132 5 270 281 0 0 chrX 39098223 39098287 -123501643 - L1MC/D LINE L1 -2166 5642 5579 2125 122 0 3 chrX 39098909 39099204 -123500726 - AluSx SINE Alu -14 298 5 4920 86 6 6 chrX 39099209 39099862 -123500068 + LTR8 LTR ERV1 37 689 -2 1616 118 39 0 chrX 39099862 39100091 -123499839 - AluJo SINE Alu -74 238 1 2299 82 17 0 chrX 39100317 39100611 -123499319 + AluSx SINE Alu 1 299 -13 363 64 0 0 chrX 39100612 39100659 -123499271 - LTR8 LTR ERV1 -643 48 2 428 139 0 0 chrX 39100659 39100731 -123499199 + AluJ/FRAM SINE Alu 232 303 -9 287 252 33 70 chrX 39100826 39101062 -123498868 + LTR16C LTR ERVL 229 457 0 2480 80 0 0 chrX 39101268 39101568 -123498362 + AluSx SINE Alu 1 300 -12 1683 225 62 16 chrX 39101675 39102189 -123497741 + L1PB4 LINE L1 5273 5833 -329 1806 204 9 49 chrX 39102189 39102472 -123497458 - MLT1C LTR MaLR 0 467 174 2339 95 3 3 chrX 39102472 39102777 -123497153 - AluSg SINE Alu -5 305 1 1806 204 9 49 chrX 39102777 39102854 -123497076 - MLT1C LTR MaLR -293 174 124 2325 97 0 10 chrX 39102854 39103165 -123496765 - AluSx SINE Alu -4 308 1 1806 204 9 49 chrX 39103165 39103234 -123496696 - MLT1C LTR MaLR -343 124 54 630 210 105 139 chrX 39103270 39103342 -123496588 + L1MC4a LINE L1 5834 5907 -1901 2156 122 3 0 chrX 39103342 39103646 -123496284 + AluSx SINE Alu 4 308 -4 2253 88 0 3 chrX 39103651 39103961 -123495969 - AluSx SINE Alu 0 309 1 630 210 105 139 chrX 39103961 39104228 -123495702 + L1MC4a LINE L1 5911 6186 -1622 2157 100 4 4 chrX 39104228 39104530 -123495400 - AluSc SINE Alu 0 302 1 630 210 105 139 chrX 39104530 39104542 -123495388 + L1MC4a LINE L1 6186 6197 -1611 1691 188 7 17 chrX 39104542 39104835 -123495095 - AluJo SINE Alu -22 290 1 630 210 105 139 chrX 39104835 39105025 -123494905 + L1MC4a LINE L1 6197 6366 -1442 2278 95 3 0 chrX 39105026 39105320 -123494610 - AluSc SINE Alu -14 295 1 24 67 0 0 chrX 39105348 39105393 -123494537 + AT_rich Low_complexity Low_complexity 1 45 0 231 200 12 62 chrX 39105399 39105479 -123494451 + L1P LINE L1 3178 3253 -2893 2007 137 0 10 chrX 39105563 39105863 -123494067 - AluJb SINE Alu -12 300 4 2234 102 3 3 chrX 39105946 39106240 -123493690 - AluSc SINE Alu -15 294 1 183 204 0 0 chrX 39106250 39106294 -123493636 + T-rich Low_complexity Low_complexity 1 44 0 495 246 8 101 chrX 39106369 39106770 -123493160 + L1MC4 LINE L1 6876 7140 -821 2037 91 95 0 chrX 39106770 39107044 -123492886 + AluSx SINE Alu 1 300 -12 495 246 8 101 chrX 39107044 39107159 -123492771 + L1MC4 LINE L1 7140 7264 -697 1239 185 112 46 chrX 39107300 39107667 -123492263 + LTR37A LTR ERV1 18 408 -18 349 251 35 150 chrX 39107721 39107794 -123492136 + L1MC4 LINE L1 7346 7426 -616 2224 103 7 0 chrX 39107794 39108094 -123491836 + AluSp SINE Alu 1 302 -11 349 251 35 150 chrX 39108094 39108316 -123491614 + L1MC4 LINE L1 7426 7594 -448 1874 86 123 0 chrX 39108316 39108584 -123491346 + AluSq SINE Alu 1 301 -2 349 251 35 150 chrX 39108584 39108654 -123491276 + L1MC4 LINE L1 7594 7670 -372 1996 108 54 4 chrX 39108699 39108977 -123490953 - AluY SINE Alu -19 292 1 1821 179 55 6 chrX 39109116 39109462 -123490468 + MLT1A1 LTR MaLR 1 363 -2 1179 123 0 0 chrX 39109473 39109628 -123490302 - AluSg/x SINE Alu -20 290 136 226 333 0 0 chrX 39109703 39109790 -123490140 + L1MC5 LINE L1 7808 7894 -67 832 143 0 126 chrX 39109798 39109980 -123489950 - FAM SINE Alu -2 47 1 2218 105 3 16 chrX 39110181 39110496 -123489434 + AluSx SINE Alu 1 311 -1 180 265 0 41 chrX 39110857 39110906 -123489024 - MIR SINE MIR -129 79 33 420 269 41 47 chrX 39110920 39111091 -123488839 + MER20B DNA MER1_type 1 170 -613 2263 102 0 3 chrX 39111297 39111592 -123488338 + AluSx SINE Alu 3 296 -16 1682 163 76 7 chrX 39112037 39112325 -123487605 - AluJb SINE Alu -4 308 1 252 195 37 122 chrX 39112487 39112569 -123487361 - L2 LINE L2 0 3272 3198 1660 91 0 0 chrX 39112571 39112791 -123487139 - AluSq SINE Alu 0 313 94 1073 58 0 36 chrX 39112804 39112942 -123486988 + AluSx SINE Alu 1 133 -180 1200 158 0 0 chrX 39115688 39115908 -123484022 + AluSx SINE Alu 121 340 0 180 225 42 42 chrX 39115913 39115984 -123483946 + MIR SINE MIR 2 72 -190 1484 233 77 22 chrX 39116277 39116342 -123483588 - L1ME2 LINE L1 0 6164 6104 2061 137 0 0 chrX 39116342 39116635 -123483295 + AluSx SINE Alu 3 295 -17 1484 233 77 22 chrX 39116635 39117024 -123482906 - L1ME2 LINE L1 -60 6104 5685 2339 105 0 9 chrX 39118022 39118337 -123481593 + AluSx SINE Alu 1 312 0 749 233 90 5 chrX 39118469 39118546 -123481384 - MIR SINE MIR -19 243 174 1483 250 104 51 chrX 39118546 39119171 -123480759 - MLT2F LTR ERVL -1 662 5 749 233 90 5 chrX 39119171 39119316 -123480614 - MIR SINE MIR -88 174 2 2175 120 7 3 chrX 39119349 39119828 -123480102 + AluSx SINE Alu 1 480 0 659 326 13 8 chrX 39119830 39120069 -123479861 + L3 LINE CR1 1336 1575 -2 2371 94 0 0 chrX 39120866 39121163 -123478767 + AluSc SINE Alu 1 297 -12 989 268 105 24 chrX 39121179 39121393 -123478537 + LTR33 LTR ERVL 29 224 -297 270 0 0 0 chrX 39121393 39121423 -123478507 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2291 86 7 0 chrX 39121425 39121705 -123478225 - AluSx SINE Alu -30 282 1 989 268 105 24 chrX 39121705 39121943 -123477987 + LTR33 LTR ERVL 224 521 0 1037 205 12 37 chrX 39122129 39122223 -123477707 + MIR SINE MIR 14 109 -153 1270 145 4 40 chrX 39122223 39122450 -123477480 + MER20 DNA MER1_type 1 219 0 1037 205 12 37 chrX 39122450 39122599 -123477331 + MIR SINE MIR 109 251 -11 192 315 82 14 chrX 39122712 39122785 -123477145 + L2 LINE L2 3200 3277 -36 22 0 0 0 chrX 39123101 39123123 -123476807 + AT_rich Low_complexity Low_complexity 1 22 0 457 238 74 45 chrX 39123839 39123904 -123476026 - MIR SINE MIR -11 251 189 2069 124 10 0 chrX 39123904 39124194 -123475736 + AluSx SINE Alu 1 293 -19 192 77 0 0 chrX 39124194 39124220 -123475710 + (TATATG)n Simple_repeat Simple_repeat 4 29 0 457 238 74 45 chrX 39124220 39124355 -123475575 - MIR SINE MIR -72 190 44 2065 107 40 0 chrX 39124519 39124814 -123475116 - AluSg SINE Alu 0 306 1 207 100 0 0 chrX 39125060 39125090 -123474840 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 758 192 133 10 chrX 39125161 39125364 -123474566 - MIR SINE MIR -33 229 2 1080 212 144 99 chrX 39125569 39125970 -123473960 - MLT1G1 LTR MaLR -12 583 201 5163 74 4 40 chrX 39125970 39126097 -123473833 - LTR8 LTR ERV1 0 691 561 2483 94 0 0 chrX 39126097 39126406 -123473524 - AluSg SINE Alu -1 309 1 5163 74 4 40 chrX 39126406 39126829 -123473101 - LTR8 LTR ERV1 -130 561 170 1966 112 13 49 chrX 39126829 39127155 -123472775 - AluSg1 SINE Alu 0 309 1 5163 74 4 40 chrX 39127155 39127320 -123472610 - LTR8 LTR ERV1 -521 170 1 1080 212 144 99 chrX 39127320 39127475 -123472455 - MLT1G1 LTR MaLR -394 201 2 938 228 16 0 chrX 39127813 39128002 -123471928 + MER58A DNA MER1_type 27 218 -6 1930 151 0 3 chrX 39129436 39129728 -123470202 + AluJo SINE Alu 1 291 -21 1925 142 19 19 chrX 39129736 39130045 -123469885 + AluJo SINE Alu 1 309 -3 518 201 128 13 chrX 39130052 39130201 -123469729 + L1MC4a LINE L1 5600 5765 -2043 482 116 7 0 chrX 39130203 39130276 -123469654 - MER51B LTR ERV1 0 633 314 299 167 0 0 chrX 39130279 39130327 -123469603 - MER58 DNA MER1_type -110 231 184 2271 107 3 0 chrX 39130373 39130673 -123469257 + AluSx SINE Alu 1 301 -11 435 223 90 18 chrX 39130674 39130840 -123469090 + L1MC4a LINE L1 5818 5995 -1813 1334 247 79 28 chrX 39130860 39131317 -123468613 - LTR33A LTR ERVL -43 480 1 2400 94 0 0 chrX 39131656 39131954 -123467976 + AluSg SINE Alu 1 298 -12 1049 161 6 0 chrX 39132141 39132302 -123467628 - AluJb SINE Alu -22 290 129 2436 78 0 0 chrX 39132323 39132616 -123467314 + AluY SINE Alu 1 293 -18 2129 122 3 0 chrX 39132627 39132922 -123467008 + AluSq SINE Alu 5 300 -13 2646 136 15 31 chrX 39132922 39132969 -123466961 - L1MB2 LINE L1 -5 6166 6120 2281 103 0 3 chrX 39132969 39133269 -123466661 - AluSx SINE Alu -13 299 1 2646 136 15 31 chrX 39133269 39133568 -123466362 - L1MB2 LINE L1 -51 6120 5826 1647 168 12 59 chrX 39133568 39133741 -123466189 - AluJo SINE Alu -5 307 154 2323 104 7 0 chrX 39133741 39134050 -123465880 - AluSx SINE Alu -1 311 1 1647 168 12 59 chrX 39134050 39134198 -123465732 - AluJo SINE Alu -158 154 1 2646 136 15 31 chrX 39134198 39134305 -123465625 - L1MB2 LINE L1 -345 5826 5719 2249 98 19 3 chrX 39134321 39134628 -123465302 + AluSp SINE Alu 1 312 -1 253 303 76 17 chrX 39134867 39134986 -123464944 + MLT1L LTR MaLR 424 549 -66 183 139 0 0 chrX 39135122 39135158 -123464772 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 823 152 0 0 chrX 39135382 39135507 -123464423 - FLAM_C SINE Alu -8 125 1 1466 272 57 83 chrX 39135606 39135995 -123463935 + L1MEd LINE L1 285 683 -5627 2282 101 3 0 chrX 39135995 39136293 -123463637 + AluSx SINE Alu 1 299 -13 1466 272 57 83 chrX 39136293 39136913 -123463017 + L1MEd LINE L1 683 1318 -4992 2122 113 0 0 chrX 39136913 39137218 -123462712 + AluSx SINE Alu 1 305 0 2251 99 0 3 chrX 39137222 39137550 -123462380 + AluSx SINE Alu 1 327 0 1466 272 57 83 chrX 39137550 39137851 -123462079 + L1MEd LINE L1 1321 1614 -4696 2473 192 60 31 chrX 39137868 39138483 -123461447 + L1MEd LINE L1 2353 2985 -3144 966 160 22 22 chrX 39138483 39138664 -123461266 - MLT1A1 LTR MaLR -175 190 10 2623 43 0 10 chrX 39138719 39139020 -123460910 - AluY SINE Alu -13 298 1 238 218 143 38 chrX 39139423 39139556 -123460374 - L1M4 LINE L1 -366 5812 5666 228 252 29 87 chrX 39139663 39139766 -123460164 - L1M4 LINE L1 -2465 5530 5434 2456 84 0 0 chrX 39139773 39140070 -123459860 - AluSx SINE Alu -15 297 1 25 0 0 0 chrX 39140074 39140099 -123459831 + AT_rich Low_complexity Low_complexity 1 25 0 2386 92 10 0 chrX 39140102 39140407 -123459523 + AluSc SINE Alu 1 308 -1 370 82 0 0 chrX 39140416 39140465 -123459465 + AluSc SINE Alu 247 295 -4 429 260 38 30 chrX 39140484 39140699 -123459231 - L1M4 LINE L1 -748 5398 5198 679 157 45 165 chrX 39140741 39141008 -123458922 - L1MC5 LINE L1 -36 7925 7691 22 35 0 0 chrX 39141176 39141205 -123458725 + AT_rich Low_complexity Low_complexity 1 29 0 910 278 82 54 chrX 39141254 39141572 -123458358 - L1M4 LINE L1 -1361 4785 4477 2300 113 0 0 chrX 39141572 39141883 -123458047 + AluSx SINE Alu 1 311 -1 910 278 82 54 chrX 39141883 39142141 -123457789 - L1M4 LINE L1 -1669 4477 4185 2263 84 0 69 chrX 39142141 39142476 -123457454 - AluSx SINE Alu 0 312 1 910 278 82 54 chrX 39142476 39142584 -123457346 - L1M4 LINE L1 -1961 4185 4081 1251 196 87 7 chrX 39142619 39142895 -123457035 - MLT2F LTR ERVL 0 663 366 1335 148 51 0 chrX 39142937 39143154 -123456776 + ERVL LTR ERVL 5247 5474 -290 207 162 0 0 chrX 39143433 39143470 -123456460 + (CATA)n Simple_repeat Simple_repeat 4 40 0 2351 92 3 0 chrX 39143472 39143765 -123456165 - AluSp SINE Alu -19 294 1 298 127 0 18 chrX 39143831 39143886 -123456044 - MLT2F LTR ERVL -2 661 608 1042 241 20 45 chrX 39143929 39144140 -123455790 - MLT2F LTR ERVL -57 606 400 2757 84 17 6 chrX 39144140 39144498 -123455432 - THE1B LTR MaLR -2 362 1 1042 241 20 45 chrX 39144498 39144531 -123455399 - MLT2F LTR ERVL -263 400 368 696 238 10 7 chrX 39144539 39144743 -123455187 - MLT2F LTR ERVL -413 250 1 2300 94 3 0 chrX 39144758 39145057 -123454873 - AluSq SINE Alu -7 306 7 1781 214 80 40 chrX 39145087 39145611 -123454319 - L1ME1 LINE L1 -5 6161 5617 * 2843 226 68 25 chrX 39145608 39146000 -123453930 - L1ME1 LINE L1 -802 5344 4971 2056 133 3 0 chrX 39146000 39146285 -123453645 + AluSx SINE Alu 1 286 -26 2843 226 68 25 chrX 39146285 39146304 -123453626 - L1ME1 LINE L1 -1175 4971 4954 189 0 0 0 chrX 39146304 39146325 -123453605 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 2843 226 68 25 chrX 39146325 39146876 -123453054 - L1ME1 LINE L1 -1192 4954 4339 751 183 12 91 chrX 39146872 39146921 -123453009 - L1ME1 LINE L1 -2992 3154 3103 * 2286 91 0 7 chrX 39146921 39147232 -123452698 - AluSx SINE Alu 0 309 1 751 183 12 91 chrX 39147232 39147422 -123452508 - L1ME1 LINE L1 -3043 3103 2933 597 206 168 0 chrX 39147448 39147603 -123452327 + MLT1B LTR MaLR 210 390 0 204 40 0 0 chrX 39148943 39148968 -123450962 + (TG)n Simple_repeat Simple_repeat 1 25 0 1638 122 157 22 chrX 39149962 39150274 -123449656 + L1MB8 LINE L1 5507 5860 -324 855 164 55 33 chrX 39150279 39150462 -123449468 + L1MB8 LINE L1 5991 6177 -1 2412 82 0 3 chrX 39150470 39150773 -123449157 + AluSg SINE Alu 1 302 -8 2027 144 0 3 chrX 39150972 39151271 -123448659 - AluJb SINE Alu -14 298 1 786 328 52 28 chrX 39151463 39151924 -123448006 - MARNA DNA Mariner -8 578 107 331 340 31 5 chrX 39151924 39152108 -123447822 - MIR SINE MIR -36 226 37 1855 93 12 8 chrX 39152114 39152372 -123447558 + L1PA10 LINE L1 5889 6147 -21 2313 107 7 0 chrX 39152374 39152719 -123447211 - AluSx SINE Alu 0 347 1 34 0 0 0 chrX 39152726 39152760 -123447170 + AT_rich Low_complexity Low_complexity 1 34 0 1706 128 68 0 chrX 39152887 39153136 -123446794 - AluSg SINE Alu -39 271 6 562 257 103 49 chrX 39153762 39153791 -123446139 - MIR SINE MIR 0 262 236 2218 104 27 64 chrX 39153791 39154003 -123445927 - THE1B LTR MaLR 0 364 171 2448 99 0 0 chrX 39154003 39154307 -123445623 + AluSx SINE Alu 1 304 -8 2218 104 27 64 chrX 39154307 39154470 -123445460 - THE1B LTR MaLR -193 171 3 562 257 103 49 chrX 39154470 39154686 -123445244 - MIR SINE MIR -26 236 4 856 231 245 44 chrX 39154941 39155353 -123444577 + MLT1H LTR MaLR 40 534 -15 2045 115 0 27 chrX 39155535 39155831 -123444099 - AluSx SINE Alu -1 311 24 1959 89 46 32 chrX 39155978 39156119 -123443811 + AluSx SINE Alu 1 138 -170 2164 105 3 7 chrX 39156119 39156414 -123443516 + AluSc SINE Alu 1 294 -15 1959 89 46 32 chrX 39156414 39156576 -123443354 + AluSx SINE Alu 138 308 0 25 0 0 0 chrX 39156823 39156848 -123443082 + AT_rich Low_complexity Low_complexity 1 25 0 534 197 40 13 chrX 39156848 39157000 -123442930 - L1MC4 LINE L1 -3 8039 7884 1891 137 0 65 chrX 39157019 39157220 -123442710 - AluJb SINE Alu -9 303 129 2238 94 7 32 chrX 39157220 39157529 -123442401 - AluSq SINE Alu -12 301 1 1891 137 0 65 chrX 39157529 39157649 -123442281 - AluJb SINE Alu -183 129 3 1173 221 18 21 chrX 39157699 39157980 -123441950 - L1MC4 LINE L1 -140 7902 7623 1998 138 10 10 chrX 39157981 39158277 -123441653 - AluJo SINE Alu -13 299 4 351 51 57 0 chrX 39158281 39158334 -123441596 - FLAM SINE Alu -2 131 82 1131 119 18 18 chrX 39158336 39158504 -123441426 - AluJo SINE Alu -98 214 47 1064 160 22 0 chrX 39158506 39158687 -123441243 - L1MC4 LINE L1 -409 7633 7449 191 311 253 11 chrX 39158929 39159119 -123440811 + L3 LINE CR1 1334 1569 -8 1913 240 17 21 chrX 39159223 39159706 -123440224 + L1MC4a LINE L1 5377 5857 -1951 2326 99 3 3 chrX 39159709 39160012 -123439918 + AluSx SINE Alu 1 303 -9 2135 117 0 0 chrX 39160033 39160362 -123439568 + AluSq SINE Alu 1 329 0 2353 103 0 0 chrX 39160579 39160879 -123439051 - AluSx SINE Alu -12 300 1 865 170 0 0 chrX 39160947 39161082 -123438848 + FLAM_C SINE Alu 1 135 -8 2212 108 17 0 chrX 39161224 39161521 -123438409 + AluSx SINE Alu 1 302 -10 931 256 65 40 chrX 39161703 39162091 -123437839 + LTR16A1 LTR ERVL 82 457 0 1899 157 0 48 chrX 39162832 39162979 -123436951 + AluJo SINE Alu 1 127 -185 2176 124 7 0 chrX 39162979 39163285 -123436645 + AluSx SINE Alu 1 308 -4 1899 157 0 48 chrX 39163285 39163450 -123436480 + AluJo SINE Alu 127 298 -14 1416 187 11 89 chrX 39163458 39163507 -123436423 + MER58B DNA MER1_type 2 53 -2367 2413 100 0 0 chrX 39163507 39163816 -123436114 - AluSx SINE Alu -3 309 1 1416 187 11 89 chrX 39163816 39163864 -123436066 + MER58B DNA MER1_type 53 103 -2317 2274 95 0 0 chrX 39163864 39164186 -123435744 - AluSq SINE Alu 0 322 1 1416 187 11 89 chrX 39164186 39164394 -123435536 + MER58B DNA MER1_type 103 278 -2142 2741 173 112 18 chrX 39164394 39164966 -123434964 + MLT1E2 LTR MaLR 1 626 0 1416 187 11 89 chrX 39164966 39165026 -123434904 + MER58B DNA MER1_type 278 341 0 659 210 153 0 chrX 39165042 39165199 -123434731 + MER5A DNA MER1_type 9 189 0 1995 98 0 0 chrX 39165230 39165485 -123434445 - AluSx SINE Alu -57 255 1 645 225 50 12 chrX 39165540 39165700 -123434230 - MER110 LTR ERV1 -105 386 221 297 261 92 21 chrX 39166082 39166224 -123433706 + L2 LINE L2 3149 3300 -13 2119 133 0 3 chrX 39166876 39167178 -123432752 - AluSq SINE Alu -12 301 1 1244 192 76 112 chrX 39167731 39167954 -123431976 + LTR37B LTR ERV1 9 238 -230 2232 59 7 56 chrX 39167954 39168259 -123431671 + AluSx SINE Alu 1 290 -22 2299 81 0 20 chrX 39168268 39168566 -123431364 + AluSc SINE Alu 1 292 -17 1244 192 76 112 chrX 39168566 39168805 -123431125 + LTR37B LTR ERV1 246 464 -4 2223 89 4 0 chrX 39169224 39169532 -123430398 + AluSx SINE Alu 1 309 0 2404 88 0 3 chrX 39169542 39169839 -123430091 + AluSx SINE Alu 1 296 -16 379 83 0 0 chrX 39170247 39170295 -123429635 - MSTD LTR MaLR -1 395 348 2306 82 20 16 chrX 39170300 39170604 -123429326 - AluSc SINE Alu -4 305 1 304 185 46 56 chrX 39170970 39171078 -123428852 - L1ME4a LINE L1 -56 6065 5959 1663 186 58 65 chrX 39171088 39171371 -123428559 - MLT1C LTR MaLR -8 459 179 2254 102 0 0 chrX 39171371 39171656 -123428274 - AluSx SINE Alu -27 285 1 1663 186 58 65 chrX 39171656 39171834 -123428096 - MLT1C LTR MaLR -288 179 1 2172 103 14 3 chrX 39171880 39172170 -123427760 - AluSx SINE Alu -19 293 1 454 303 83 0 chrX 39172197 39172329 -123427601 + LTR33 LTR ERVL 55 197 -324 585 315 17 0 chrX 39172342 39172523 -123427407 + LTR33 LTR ERVL 330 513 -8 1972 178 48 30 chrX 39172564 39172583 -123427347 + LTR37B LTR ERV1 1 18 -450 2455 65 0 3 chrX 39172583 39172877 -123427053 + AluY SINE Alu 1 293 -18 306 0 0 0 chrX 39172877 39172911 -123427019 + (TA)n Simple_repeat Simple_repeat 2 35 0 1972 178 48 30 chrX 39172911 39173350 -123426580 + LTR37B LTR ERV1 17 468 0 326 191 0 0 chrX 39173407 39173470 -123426460 - L1ME4a LINE L1 -2038 5770 5708 1164 142 0 0 chrX 39173709 39173885 -123426045 - AluSg/x SINE Alu 0 312 137 243 296 47 21 chrX 39173963 39174128 -123425802 - MIR SINE MIR -26 236 13 510 188 10 21 chrX 39174336 39174432 -123425498 - MER58C DNA MER1_type 0 215 121 2051 101 3 35 chrX 39174457 39174743 -123425187 + AluSx SINE Alu 12 288 -24 23 0 0 0 chrX 39174743 39174766 -123425164 + AT_rich Low_complexity Low_complexity 1 23 0 2283 95 3 13 chrX 39174769 39175074 -123424856 + AluSg SINE Alu 1 302 -8 1403 150 0 0 chrX 39175083 39175303 -123424627 + AluSg/x SINE Alu 83 302 -8 241 206 0 151 chrX 39175312 39175336 -123424594 - MER58C DNA MER1_type -152 63 37 2387 83 7 0 chrX 39175336 39175636 -123424294 + AluSg SINE Alu 1 302 -8 241 206 0 151 chrX 39175636 39175684 -123424246 - MER58C DNA MER1_type -178 37 2 335 276 10 0 chrX 39175684 39175782 -123424148 - L1MEd LINE L1 -5108 1011 913 1259 199 7 43 chrX 39175782 39176058 -123423872 - AluJb SINE Alu -3 309 44 2776 26 0 0 chrX 39176501 39176808 -123423122 + AluY SINE Alu 1 307 -4 2148 132 3 0 chrX 39177698 39178002 -123421928 - AluSx SINE Alu -7 305 1 2512 74 3 0 chrX 39178505 39178804 -123421126 - AluSp SINE Alu -13 300 1 1454 209 16 12 chrX 39179105 39179426 -123420504 - L1ME1 LINE L1 0 6166 5845 2331 100 7 0 chrX 39179437 39179747 -123420183 - AluSx SINE Alu 0 312 1 1094 89 0 0 chrX 39179747 39179882 -123420048 - AluSq/x SINE Alu -176 137 3 2414 209 12 43 chrX 39179884 39180266 -123419664 - L1ME1 LINE L1 -315 5851 5493 2313 103 0 0 chrX 39180266 39180558 -123419372 - AluSg SINE Alu -18 292 1 2414 209 12 43 chrX 39180558 39180774 -123419156 - L1ME1 LINE L1 -673 5493 5272 2447 153 19 36 chrX 39180779 39181112 -123418818 - L1MB7 LINE L1 -19 6165 5828 2449 76 0 22 chrX 39181112 39181427 -123418503 - AluSg SINE Alu -1 309 2 2447 153 19 36 chrX 39181427 39181465 -123418465 - L1MB7 LINE L1 -356 5828 5791 2281 83 3 7 chrX 39181465 39181754 -123418176 + AluSp SINE Alu 1 288 -25 259 44 44 0 chrX 39181755 39181800 -123418130 + (TA)n Simple_repeat Simple_repeat 2 48 0 2447 153 19 36 chrX 39181800 39181897 -123418033 - L1MB7 LINE L1 -392 5792 5702 669 86 0 0 chrX 39181897 39181989 -123417941 + L1PA8 LINE L1 6080 6172 0 2554 158 31 43 chrX 39181990 39182427 -123417503 - L1MB7 LINE L1 -473 5711 5278 1890 149 3 20 chrX 39182427 39182729 -123417201 + AluJo SINE Alu 6 302 -10 2554 158 31 43 chrX 39182729 39183031 -123416899 - L1MB7 LINE L1 -906 5278 4974 229 220 20 0 chrX 39183011 39183061 -123416869 - L1MB7 LINE L1 -2294 3852 3802 * 919 214 16 21 chrX 39183090 39183277 -123416653 - L1MC4 LINE L1 -1139 6903 6718 323 227 0 30 chrX 39183283 39183349 -123416581 + MER58 DNA MER1_type 1 181 -160 2370 92 3 0 chrX 39183349 39183652 -123416278 - AluSc SINE Alu -5 304 1 420 254 71 53 chrX 39183652 39183990 -123415940 - L1MC4a LINE L1 -1318 6490 6147 329 273 45 32 chrX 39184084 39184224 -123415706 + L1M4 LINE L1 3613 3757 -2389 1957 104 0 102 chrX 39184224 39184559 -123415371 + AluSq SINE Alu 1 301 -2 329 273 45 32 chrX 39184559 39184572 -123415358 + L1M4 LINE L1 3757 3768 -2378 208 163 0 61 chrX 39184593 39184642 -123415288 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 781 268 65 4 chrX 39184649 39184895 -123415035 + MIR SINE MIR 2 262 0 358 137 0 0 chrX 39185023 39185074 -123414856 - 5S rRNA rRNA -70 51 1 1589 220 84 81 chrX 39185135 39185756 -123414174 - MER77 LTR ERV1 -8 597 67 851 266 34 48 chrX 39185837 39186328 -123413602 + MLT1H LTR MaLR 2 565 -2 236 307 92 73 chrX 39186403 39186588 -123413342 - L1ME LINE L1 -378 5743 5552 2149 80 90 7 chrX 39186588 39186876 -123413054 - AluSx SINE Alu 0 312 1 236 307 92 73 chrX 39186876 39186908 -123413022 - L1ME LINE L1 -569 5552 5522 820 210 31 97 chrX 39187107 39187249 -123412681 + MIR SINE MIR 2 121 -141 2257 106 7 0 chrX 39187249 39187551 -123412379 + AluSq SINE Alu 1 304 -9 820 210 31 97 chrX 39187551 39187665 -123412265 + MIR SINE MIR 121 241 -21 2607 72 0 0 chrX 39187804 39188111 -123411819 + AluSx SINE Alu 1 307 -5 2440 88 3 0 chrX 39188865 39189171 -123410759 + AluSp SINE Alu 1 307 -6 432 0 0 0 chrX 39189293 39189341 -123410589 + (TG)n Simple_repeat Simple_repeat 1 48 0 234 0 0 0 chrX 39189340 39189366 -123410564 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2051 108 4 7 chrX 39189367 39189646 -123410284 - AluSq SINE Alu -35 278 1 1320 223 83 85 chrX 39190687 39190746 -123409184 - MLT1G LTR MaLR 0 590 532 2312 111 0 0 chrX 39190746 39191044 -123408886 + AluSx SINE Alu 2 299 -13 1320 223 83 85 chrX 39191044 39191575 -123408355 - MLT1G LTR MaLR -58 532 1 1827 112 98 7 chrX 39191611 39191896 -123408034 - AluSx SINE Alu -1 311 1 1617 90 5 5 chrX 39194063 39194275 -123405655 - AluSq SINE Alu -101 212 1 273 228 0 76 chrX 39194764 39194843 -123405087 + L2 LINE L2 3184 3256 -16 210 118 0 0 chrX 39194845 39194879 -123405051 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1746 110 0 0 chrX 39195114 39195370 -123404560 + AluSx SINE Alu 58 313 0 2300 79 10 13 chrX 39195544 39195713 -123404217 - AluSc SINE Alu -6 303 134 2423 89 0 3 chrX 39195713 39196017 -123403913 - AluSx SINE Alu -9 303 1 2300 79 10 13 chrX 39196017 39196151 -123403779 - AluSc SINE Alu -175 134 1 598 218 16 0 chrX 39196152 39196276 -123403654 - MER105 DNA DNA -16 188 63 1945 173 76 47 chrX 39196282 39196470 -123403460 - LTR54B LTR ERV1 -11 487 306 2267 68 41 3 chrX 39196470 39196762 -123403168 - AluY SINE Alu -7 304 2 1945 173 76 47 chrX 39196762 39197046 -123402884 - LTR54B LTR ERV1 -192 306 1 2790 164 37 41 chrX 39197060 39197428 -123402502 - MLT2B2 LTR ERVL 0 515 148 2188 133 0 0 chrX 39197428 39197730 -123402200 - AluSx SINE Alu -10 302 1 2790 164 37 41 chrX 39197730 39197878 -123402052 - MLT2B2 LTR ERVL -367 148 1 253 329 13 34 chrX 39198063 39198095 -123401835 - L1ME LINE L1 -251 5870 5839 2353 84 0 3 chrX 39198095 39198391 -123401539 - AluSq SINE Alu -18 295 1 253 329 13 34 chrX 39198391 39198507 -123401423 - L1ME LINE L1 -282 5839 5725 1272 187 17 0 chrX 39198805 39199035 -123400895 - L1MC1 LINE L1 0 6333 6100 667 102 0 0 chrX 39199053 39199141 -123400789 + AluSq/x SINE Alu 23 110 -202 4793 116 0 21 chrX 39199171 39199889 -123400041 - L1MC1 LINE L1 -263 6070 5368 2361 99 0 3 chrX 39199895 39200198 -123399732 - AluSx SINE Alu -10 302 1 2198 101 7 13 chrX 39201080 39201378 -123398552 + AluSx SINE Alu 1 296 -16 2443 97 0 0 chrX 39202035 39202344 -123397586 - AluSx SINE Alu -3 309 1 311 349 79 7 chrX 39202394 39202546 -123397384 + MIR3 SINE MIR 4 166 -42 680 284 57 5 chrX 39203060 39203271 -123396659 - MIR SINE MIR -12 250 29 320 152 90 59 chrX 39203295 39203356 -123396574 - L1MD3 LINE L1 -1 8041 7983 2177 119 7 0 chrX 39203356 39203649 -123396281 + AluSx SINE Alu 1 295 -17 320 152 90 59 chrX 39203649 39203735 -123396195 - L1MD3 LINE L1 -59 7983 7880 243 200 18 18 chrX 39203744 39203799 -123396131 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2575 200 32 14 chrX 39203799 39204358 -123395572 - L1MC4 LINE L1 -131 7911 7343 2097 96 50 0 chrX 39206407 39206688 -123393242 + AluSg SINE Alu 1 295 -15 1829 103 48 48 chrX 39207048 39207343 -123392587 + AluSx SINE Alu 16 310 0 2343 94 0 0 chrX 39207343 39207642 -123392288 + AluSg SINE Alu 2 300 -10 2712 288 55 20 chrX 39207891 39208705 -123391225 + L1M4b LINE L1 1 843 -6016 820 76 51 0 chrX 39208723 39208841 -123391089 - MSTA LTR MaLR -304 124 1 551 270 44 26 chrX 39208851 39209104 -123390826 - L1MEc LINE L1 -4416 2031 1753 990 120 126 23 chrX 39209107 39209282 -123390648 + MSTA LTR MaLR 232 424 -4 2214 191 212 41 chrX 39209287 39209682 -123390248 + L1MB8 LINE L1 3650 3976 -2170 2418 92 0 3 chrX 39209682 39209988 -123389942 - AluSx SINE Alu -5 307 3 2214 191 212 41 chrX 39209988 39210341 -123389589 + L1MB8 LINE L1 3976 4526 -1620 4318 165 37 49 chrX 39210343 39211608 -123388322 + L1MB8 LINE L1 4898 6177 -1 2362 104 0 0 chrX 39211620 39211919 -123388011 + AluSx SINE Alu 1 299 -13 737 217 18 6 chrX 39212026 39212310 -123387620 - MLT1A1 LTR MaLR 0 365 1 1600 200 3 29 chrX 39212428 39212738 -123387192 - AluJo SINE Alu -10 302 1 253 169 12 24 chrX 39214158 39214241 -123385689 - L1ME4a LINE L1 -3 6118 6037 2480 90 3 0 chrX 39214500 39214812 -123385118 + AluSq SINE Alu 1 313 0 522 258 13 26 chrX 39214813 39214964 -123384966 + MER5A DNA MER1_type 40 188 -1 3310 172 22 13 chrX 39215032 39215665 -123384265 + L1MB3 LINE L1 5508 6146 -37 2305 108 0 0 chrX 39215666 39215962 -123383968 - AluSx SINE Alu -16 296 1 2046 89 18 18 chrX 39215985 39216287 -123383643 - AluSx SINE Alu 0 302 1 288 0 0 0 chrX 39216331 39216363 -123383567 + (CA)n Simple_repeat Simple_repeat 2 33 0 2117 70 13 57 chrX 39216559 39216623 -123383307 + L1PA11 LINE L1 5873 5938 -236 2226 92 3 22 chrX 39216623 39216940 -123382990 + AluSx SINE Alu 1 311 -1 2444 45 0 11 chrX 39216944 39217283 -123382647 + AluY SINE Alu 1 336 0 2117 70 13 57 chrX 39217283 39217527 -123382403 + L1PA11 LINE L1 5941 6173 -1 2236 83 27 7 chrX 39218322 39218623 -123381307 - AluY SINE Alu 0 311 5 4033 130 8 0 chrX 39218628 39219338 -123380592 - L1P LINE L1 -742 5426 4711 1005 168 0 0 chrX 39219338 39219487 -123380443 + AluJb SINE Alu 136 284 -28 2302 95 9 25 chrX 39219538 39219855 -123380075 + AluSq SINE Alu 1 312 -1 523 235 30 12 chrX 39219999 39220165 -123379765 - L1ME4a LINE L1 -2 6119 5951 24 32 0 0 chrX 39220521 39220552 -123379378 + AT_rich Low_complexity Low_complexity 1 31 0 258 33 0 0 chrX 39220709 39220739 -123379191 - LTR6A LTR ERV1 -462 102 73 399 21 0 0 chrX 39221646 39221694 -123378236 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 350 170 0 0 chrX 39221711 39221764 -123378166 + Alu SINE Alu 1 53 -249 885 146 51 0 chrX 39221788 39221925 -123378005 - AluSq/x SINE Alu -169 144 1 24 0 0 0 chrX 39221979 39222003 -123377927 + AT_rich Low_complexity Low_complexity 1 24 0 194 59 39 39 chrX 39222386 39222437 -123377493 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 3013 184 45 33 chrX 39222446 39223048 -123376882 + MLT1E2 LTR MaLR 1 609 -17 2296 100 0 3 chrX 39223162 39223462 -123376468 + AluSg SINE Alu 7 305 -5 2313 104 0 0 chrX 39223686 39223984 -123375946 - AluSx SINE Alu -14 298 1 1252 105 0 6 chrX 39224019 39224190 -123375740 + AluSg/x SINE Alu 135 304 -6 363 136 0 0 chrX 39224190 39224249 -123375681 + (TA)n Simple_repeat Simple_repeat 2 60 0 628 183 78 73 chrX 39225314 39225382 -123374548 + L1MC4 LINE L1 7290 7356 -686 2730 33 0 0 chrX 39225382 39225683 -123374247 - AluY SINE Alu -9 302 2 628 183 78 73 chrX 39225683 39225805 -123374125 + L1MC4 LINE L1 7356 7481 -561 585 231 82 0 chrX 39225810 39225944 -123373986 + FRAM SINE Alu 16 160 -16 1419 204 22 108 chrX 39225947 39226151 -123373779 + L1MC4 LINE L1 7510 7730 -312 2378 99 3 0 chrX 39226151 39226454 -123373476 + AluSp SINE Alu 1 304 -9 1419 204 22 108 chrX 39226454 39226832 -123373098 + L1MC4 LINE L1 7730 8042 0 255 220 64 155 chrX 39228103 39228367 -123371563 - L1MC4 LINE L1 -3 8039 7800 726 231 48 102 chrX 39228411 39228485 -123371445 - L1MC4 LINE L1 -140 7902 7826 2327 88 3 3 chrX 39228485 39228779 -123371151 - AluSp SINE Alu -19 294 1 726 231 48 102 chrX 39228779 39228847 -123371083 - L1MC4 LINE L1 -216 7826 7756 2322 81 10 0 chrX 39228847 39229144 -123370786 - AluSx SINE Alu -12 300 1 726 231 48 102 chrX 39229144 39229334 -123370596 - L1MC4 LINE L1 -286 7756 7587 2133 113 3 0 chrX 39229337 39229664 -123370266 - AluSx SINE Alu 0 328 1 2263 100 3 3 chrX 39229697 39229996 -123369934 - AluSq SINE Alu -14 299 1 274 233 56 11 chrX 39230134 39230224 -123369706 + MIR SINE MIR 78 171 -91 506 279 8 0 chrX 39230233 39230362 -123369568 + L1ME LINE L1 5541 5670 -451 835 87 0 2 chrX 39230365 39230608 -123369322 + AluSx SINE Alu 1 292 -18 1596 94 153 8 chrX 39230821 39231075 -123368855 + AluSx SINE Alu 2 292 -10 1048 175 0 41 chrX 39231515 39231541 -123368389 + AluJb SINE Alu 114 140 -172 1473 157 108 31 chrX 39231541 39231828 -123368102 + AluJo SINE Alu 1 309 -3 2241 97 10 3 chrX 39231828 39232126 -123367804 + AluSp SINE Alu 1 301 -12 1048 175 0 41 chrX 39232126 39232292 -123367638 + AluJb SINE Alu 138 299 -13 1974 135 35 0 chrX 39232354 39232643 -123367287 + AluSx SINE Alu 1 299 -13 2106 125 0 0 chrX 39232657 39232987 -123366943 - AluSx SINE Alu 0 312 1 878 158 0 0 chrX 39233016 39233149 -123366781 - AluSq/x SINE Alu -179 133 1 275 163 65 76 chrX 39233150 39233242 -123366688 - L1MEd LINE L1 -3795 2334 2244 2066 108 16 32 chrX 39233289 39233604 -123366326 - AluSq SINE Alu -3 310 1 254 237 0 0 chrX 39233604 39233663 -123366267 + L1M4c LINE L1 1631 1689 -4695 2489 79 0 0 chrX 39233835 39234138 -123365792 + AluSx SINE Alu 1 303 -9 2179 98 3 17 chrX 39234140 39234435 -123365495 + AluSg SINE Alu 3 293 -17 1035 200 6 0 chrX 39234490 39234670 -123365260 + MLT1A1 LTR MaLR 185 365 0 2177 121 0 0 chrX 39234684 39234973 -123364957 - AluSx SINE Alu -23 289 1 784 263 87 70 chrX 39234976 39235459 -123364471 - L1MEd LINE L1 -5595 524 6 517 265 83 28 chrX 39235468 39235649 -123364281 - MIR SINE MIR -71 191 1 314 368 78 0 chrX 39236156 39236398 -123363532 - L3 LINE CR1 -1130 447 187 2113 87 47 10 chrX 39236516 39236814 -123363116 + AluSg SINE Alu 2 310 0 514 293 58 23 chrX 39237020 39237279 -123362651 - L2 LINE L2 0 3313 3046 651 281 52 0 chrX 39237301 39237493 -123362437 + L2 LINE L2 2020 2221 -1093 1917 229 37 27 chrX 39237575 39238087 -123361843 - LTR40a LTR ERVL -1 518 2 228 67 0 0 chrX 39238139 39238169 -123361761 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2237 69 43 0 chrX 39238172 39238449 -123361481 - AluY SINE Alu -22 289 1 1638 226 91 71 chrX 39238465 39238703 -123361227 + L1MC5 LINE L1 6047 6279 -1529 1730 133 104 0 chrX 39238703 39238822 -123361108 + AluJb SINE Alu 1 106 -206 405 0 0 0 chrX 39238822 39238867 -123361063 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1730 133 104 0 chrX 39238867 39239017 -123360913 + AluJb SINE Alu 106 298 -14 1638 226 91 71 chrX 39239017 39239767 -123360163 + L1MC5 LINE L1 6279 6937 -871 1263 245 30 19 chrX 39239768 39240139 -123359791 + L2 LINE L2 2213 2587 -727 489 177 0 13 chrX 39240221 39240300 -123359630 + AluJ/FLAM SINE Alu 2 79 -233 909 259 12 16 chrX 39240517 39240772 -123359158 + LTR16A LTR ERVL 174 427 -23 2221 116 3 7 chrX 39240814 39241116 -123358814 - AluSx SINE Alu -11 301 1 261 289 70 28 chrX 39241332 39241474 -123358456 + MER89 LTR ERV1 383 530 -29 250 293 93 40 chrX 39241538 39241688 -123358242 + L2 LINE L2 3155 3312 -1 185 311 14 14 chrX 39241688 39241762 -123358168 - L2 LINE L2 -277 3036 2963 1972 110 10 20 chrX 39242397 39242725 -123357205 + AluSx SINE Alu 1 312 0 1261 97 0 0 chrX 39242725 39242914 -123357016 + AluSq SINE Alu 134 322 0 358 243 171 62 chrX 39242923 39243083 -123356847 - HAL1 LINE L1 -6 2501 2360 2228 106 3 0 chrX 39243083 39243398 -123356532 - AluSp SINE Alu 0 316 1 358 243 171 62 chrX 39243398 39243420 -123356510 - HAL1 LINE L1 -147 2360 2342 279 0 0 0 chrX 39243420 39243451 -123356479 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2058 114 0 0 chrX 39243451 39243732 -123356198 - AluSq SINE Alu -32 281 1 358 243 171 62 chrX 39243732 39243850 -123356080 - HAL1 LINE L1 -164 2343 2165 2448 90 0 0 chrX 39243901 39244212 -123355718 + AluSq SINE Alu 1 311 -2 422 247 80 56 chrX 39244228 39244390 -123355540 - HAL1 LINE L1 -1638 869 704 1954 132 3 7 chrX 39244582 39244870 -123355060 + AluSx SINE Alu 1 287 -25 27 29 0 0 chrX 39244870 39244904 -123355026 + AT_rich Low_complexity Low_complexity 1 34 0 206 275 14 14 chrX 39245503 39245572 -123354358 + L2 LINE L2 2465 2533 -781 526 286 61 21 chrX 39245584 39245864 -123354066 + L1MC4a LINE L1 3683 3973 -2173 1918 145 0 24 chrX 39245912 39246208 -123353722 + AluJo SINE Alu 13 301 -11 5188 134 21 37 chrX 39246279 39246694 -123353236 + L1PA16 LINE L1 4631 5051 -1115 2366 97 3 0 chrX 39246694 39246994 -123352936 + AluSp SINE Alu 1 301 -12 5188 134 21 37 chrX 39246994 39248007 -123351923 + L1PA16 LINE L1 5051 6034 -132 2346 117 0 0 chrX 39248007 39248315 -123351615 + AluSq SINE Alu 1 308 -5 5188 134 21 37 chrX 39248315 39248437 -123351493 + L1PA16 LINE L1 6034 6156 -10 1878 118 0 0 chrX 39248488 39248743 -123351187 + AluSq SINE Alu 42 296 -17 829 141 0 0 chrX 39248810 39248938 -123350992 + L1MB3 LINE L1 6045 6172 -11 306 0 0 0 chrX 39248938 39248972 -123350958 + (TG)n Simple_repeat Simple_repeat 1 34 0 510 289 35 59 chrX 39248993 39249405 -123350525 + L1MC4a LINE L1 4029 4411 -1735 2149 106 3 14 chrX 39249405 39249697 -123350233 - AluSx SINE Alu -23 289 1 510 289 35 59 chrX 39249697 39249963 -123349967 + L1MC4a LINE L1 4411 4682 -1464 255 139 0 0 chrX 39249967 39250003 -123349927 + Alu SINE Alu 3 38 -264 40 49 0 0 chrX 39250073 39250134 -123349796 + AT_rich Low_complexity Low_complexity 1 61 0 1945 89 0 4 chrX 39250361 39250608 -123349322 - AluSx SINE Alu -20 292 47 1947 235 105 37 chrX 39250615 39250938 -123348992 + L1MC4a LINE L1 5005 4919 -1227 1951 100 47 27 chrX 39250938 39251239 -123348691 - AluSx SINE Alu -5 307 1 1947 235 105 37 chrX 39251239 39251757 -123348173 + L1MC4a LINE L1 4918 5399 -747 1226 143 19 46 chrX 39251818 39252034 -123347896 - AluSg/x SINE Alu -12 298 89 1185 51 0 0 chrX 39252040 39252177 -123347753 - AluSq/x SINE Alu -175 137 1 1670 157 33 16 chrX 39252374 39252679 -123347251 - 7SLRNA srpRNA srpRNA -6 314 5 2141 101 25 0 chrX 39252914 39253214 -123346716 - AluSx SINE Alu 0 307 1 2426 83 3 6 chrX 39253230 39253542 -123346388 - AluSq SINE Alu -2 311 1 703 101 0 0 chrX 39253674 39253773 -123346157 - AluSx SINE Alu -10 300 202 2558 116 95 48 chrX 39253774 39254234 -123345696 + LTR21A LTR ERV1 3 487 -18 1684 96 0 0 chrX 39254234 39254442 -123345488 - AluSx SINE Alu -103 209 2 2558 116 95 48 chrX 39254442 39254456 -123345474 + LTR21A LTR ERV1 487 499 -6 1185 94 28 6 chrX 39254721 39254902 -123345028 - LTR54 LTR ERV1 0 510 326 824 106 16 16 chrX 39254942 39255065 -123344865 - LTR54 LTR ERV1 -387 123 1 2415 66 3 13 chrX 39255199 39255501 -123344429 - AluSp SINE Alu -14 299 1 192 267 0 0 chrX 39255813 39255873 -123344057 + CT-rich Low_complexity Low_complexity 1 60 0 307 323 11 7 chrX 39255976 39256064 -123343866 + MIR SINE MIR 60 120 -88 2597 50 0 0 chrX 39256064 39256365 -123343565 + AluY SINE Alu 1 301 -10 307 323 11 7 chrX 39256365 39256394 -123343536 + MIR SINE MIR 120 147 -61 373 167 56 0 chrX 39256525 39256597 -123343333 - L1ME2 LINE L1 -228 5936 5861 1496 149 28 93 chrX 39256788 39256903 -123343027 - L1ME2 LINE L1 -363 5801 5680 2450 70 0 7 chrX 39256903 39257204 -123342726 + AluSc SINE Alu 1 299 -10 1496 149 28 93 chrX 39257204 39257301 -123342629 - L1ME2 LINE L1 -484 5680 5615 2187 64 4 25 chrX 39257301 39257581 -123342349 - AluSq SINE Alu -39 274 1 1496 149 28 93 chrX 39257581 39257690 -123342240 - L1ME2 LINE L1 -549 5615 5500 815 155 42 0 chrX 39257747 39257889 -123342041 - AluSx SINE Alu -1 311 164 238 213 0 0 chrX 39257890 39257937 -123341993 + LTR30 LTR ERV1 1 47 -675 936 131 11 165 chrX 39257937 39258204 -123341726 + LTR12 LTR ERV1 48 273 -441 330 239 46 18 chrX 39258208 39258317 -123341613 + LTR30 LTR ERV1 544 655 -67 575 163 0 0 chrX 39258317 39258409 -123341521 + LTR12 LTR ERV1 490 581 -133 1201 79 0 55 chrX 39258409 39258574 -123341356 - AluSx SINE Alu -146 166 11 2126 122 23 0 chrX 39258637 39258941 -123340989 + AluSq SINE Alu 1 311 -2 1227 145 0 0 chrX 39259084 39259263 -123340667 - AluJ SINE Alu -15 297 119 2029 128 17 7 chrX 39259296 39259593 -123340337 - AluSx SINE Alu -12 300 1 841 92 0 92 chrX 39259597 39259728 -123340202 - AluJ SINE Alu -188 124 6 2235 111 0 7 chrX 39260086 39260393 -123339537 - AluSx SINE Alu -2 310 6 1651 169 36 13 chrX 39260549 39260850 -123339080 + AluJo SINE Alu 1 308 -4 2631 32 7 10 chrX 39260945 39261253 -123338677 + AluY SINE Alu 1 307 -4 246 149 35 0 chrX 39261536 39261623 -123338307 + (TA)n Simple_repeat Simple_repeat 1 90 0 2163 123 0 0 chrX 39261624 39261916 -123338014 - AluSq SINE Alu -20 293 2 2299 97 0 0 chrX 39262156 39262445 -123337485 + AluSc SINE Alu 3 291 -18 27 73 0 0 chrX 39262445 39262500 -123337430 + AT_rich Low_complexity Low_complexity 1 55 0 2532 76 0 0 chrX 39262675 39262979 -123336951 - AluSg SINE Alu -6 304 1 1869 93 0 4 chrX 39263674 39263910 -123336020 + AluSp SINE Alu 62 296 -17 180 111 0 0 chrX 39263953 39263980 -123335950 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 252 288 75 0 chrX 39263981 39264061 -123335869 - L2 LINE L2 -25 3288 3203 2181 131 0 3 chrX 39264243 39264556 -123335374 - AluSx SINE Alu 0 312 1 1031 239 88 54 chrX 39264607 39264632 -123335298 + Charlie8 DNA MER1_type 86 109 -2308 261 0 0 0 chrX 39264632 39264661 -123335269 + (CA)n Simple_repeat Simple_repeat 1 29 0 1031 239 88 54 chrX 39264661 39264987 -123334943 + Charlie8 DNA MER1_type 109 449 -1968 2327 109 3 0 chrX 39265036 39265340 -123334590 - AluSx SINE Alu -7 305 1 185 267 13 27 chrX 39265355 39265430 -123334500 - L2 LINE L2 -264 3008 2935 853 137 0 8 chrX 39265717 39265848 -123334082 - AluSg/x SINE Alu -96 214 85 249 273 68 25 chrX 39266026 39266187 -123333743 + L1MC4a LINE L1 6064 6231 -1577 1001 227 22 4 chrX 39266268 39266493 -123333437 + L1M4 LINE L1 16 244 -6298 * 1238 201 7 37 chrX 39266491 39266790 -123333140 + L1M4 LINE L1 3151 3440 -3204 2175 108 57 0 chrX 39266795 39267091 -123332839 + AluSp SINE Alu 1 313 0 1676 153 34 30 chrX 39267136 39267431 -123332499 - AluSx SINE Alu -16 296 1 1807 154 14 10 chrX 39267467 39267760 -123332170 - AluJb SINE Alu -18 294 1 1115 250 32 40 chrX 39267793 39267864 -123332066 + L1MC4 LINE L1 6696 6766 -1276 1761 88 9 0 chrX 39267864 39268090 -123331840 + AluSg/x SINE Alu 72 299 -13 1115 250 32 40 chrX 39268090 39268143 -123331787 + L1MC4 LINE L1 6766 6818 -1224 2296 80 10 3 chrX 39268143 39268444 -123331486 + AluSc SINE Alu 1 303 -6 1115 250 32 40 chrX 39268444 39268690 -123331240 + L1MC4 LINE L1 6818 7064 -978 2352 102 0 0 chrX 39268760 39269064 -123330866 + AluSx SINE Alu 4 307 -5 1644 136 4 0 chrX 39269149 39269399 -123330531 + L1PA16 LINE L1 5907 6157 -9 29 0 0 25 chrX 39269547 39269567 -123330363 + AT_rich Low_complexity Low_complexity 1 20 -19 2295 73 0 27 chrX 39269567 39269868 -123330062 + AluY SINE Alu 1 293 -18 29 0 0 25 chrX 39269868 39269887 -123330043 + AT_rich Low_complexity Low_complexity 20 39 0 2579 57 0 3 chrX 39269891 39270191 -123329739 + AluSp SINE Alu 1 299 -14 2099 124 0 3 chrX 39270284 39270605 -123329325 + AluSx SINE Alu 3 322 0 1803 201 111 65 chrX 39270625 39270876 -123329054 + MLT1E3 LTR MaLR 1 239 -385 2308 97 0 0 chrX 39270876 39271165 -123328765 + AluSx SINE Alu 1 289 -23 1803 201 111 65 chrX 39271165 39271510 -123328420 + MLT1E3 LTR MaLR 239 624 0 320 306 0 0 chrX 39271514 39271599 -123328331 + L1MC5 LINE L1 7034 7118 -843 261 136 114 0 chrX 39271604 39271648 -123328282 - MER41E LTR ERV1 -147 365 317 21 0 0 0 chrX 39271707 39271728 -123328202 + AT_rich Low_complexity Low_complexity 1 21 0 652 163 42 202 chrX 39271728 39272089 -123327841 + L1MC5 LINE L1 7127 7429 -532 258 237 76 23 chrX 39272105 39272236 -123327694 + L1MC5 LINE L1 7508 7645 -316 2038 92 4 0 chrX 39272243 39272504 -123327426 - AluSx SINE Alu -15 297 36 2179 112 13 16 chrX 39272504 39272816 -123327114 + AluSx SINE Alu 2 312 0 499 274 25 0 chrX 39272816 39272973 -123326957 + L1MC5 LINE L1 7701 7861 -100 753 206 7 0 chrX 39273058 39273194 -123326736 - MER4C LTR ERV1 0 465 329 423 107 0 0 chrX 39273194 39273289 -123326641 - Alu SINE Alu 0 321 227 2182 105 3 46 chrX 39273291 39273615 -123326315 - AluSq SINE Alu -3 310 1 248 102 20 0 chrX 39273678 39273727 -123326203 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 2548 76 0 0 chrX 39273928 39274232 -123325698 - AluSq SINE Alu -9 304 1 180 0 0 0 chrX 39274360 39274380 -123325550 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2283 80 0 17 chrX 39274542 39274841 -123325089 + AluSc SINE Alu 16 309 0 1001 149 82 16 chrX 39274848 39275042 -123324888 + L1MB2 LINE L1 5959 6165 -6 765 288 107 6 chrX 39275103 39275559 -123324371 + L1ME3A LINE L1 5317 5951 -219 * 2153 128 53 60 chrX 39275553 39275952 -123323978 + L1MB2 LINE L1 5721 6118 -53 1530 127 60 0 chrX 39275952 39276199 -123323731 + L1MA5A LINE L1 6028 6294 -3 2153 128 53 60 chrX 39276199 39276214 -123323716 + L1MB2 LINE L1 6118 6132 -39 2122 140 0 0 chrX 39276407 39276714 -123323216 - AluSx SINE Alu -5 307 1 659 34 34 0 chrX 39276714 39276802 -123323128 + (TTTTC)n Simple_repeat Simple_repeat 2 92 0 1630 151 3 72 chrX 39276802 39277106 -123322824 - AluJb SINE Alu -29 283 1 2360 93 0 34 chrX 39277177 39277320 -123322610 + AluSx SINE Alu 1 147 -165 2193 109 14 0 chrX 39277320 39277614 -123322316 + AluSx SINE Alu 1 298 -14 2360 93 0 34 chrX 39277614 39277793 -123322137 + AluSx SINE Alu 147 312 0 2344 78 0 0 chrX 39277937 39278248 -123321682 - AluSp SINE Alu 0 311 1 2356 105 0 9 chrX 39278253 39278568 -123321362 - AluSx SINE Alu 0 312 1 1864 163 0 3 chrX 39278591 39278891 -123321039 - AluJo SINE Alu -13 299 1 24 32 0 0 chrX 39278891 39278922 -123321008 + AT_rich Low_complexity Low_complexity 1 31 0 2256 78 3 40 chrX 39278923 39279244 -123320686 + AluY SINE Alu 1 309 -2 504 191 34 27 chrX 39279260 39279407 -123320523 + L1M4 LINE L1 4298 4445 -1701 505 328 48 38 chrX 39279567 39279860 -123320070 - L2 LINE L2 -1930 1384 1089 352 293 5 66 chrX 39279891 39280089 -123319841 - L2 LINE L2 -2737 577 392 1408 142 0 43 chrX 39280089 39280202 -123319728 + AluJo SINE Alu 11 110 -202 2373 81 0 26 chrX 39280202 39280511 -123319419 - AluSg SINE Alu -9 301 1 1408 142 0 43 chrX 39280511 39280630 -123319300 + AluJo SINE Alu 110 233 -79 2352 88 0 0 chrX 39280866 39281173 -123318757 + AluSc SINE Alu 1 307 -2 729 175 0 132 chrX 39281227 39281416 -123318514 - FRAM SINE Alu -12 164 1 789 176 53 74 chrX 39281417 39281484 -123318446 + L1ME3A LINE L1 5700 5767 -403 474 108 0 0 chrX 39281484 39281558 -123318372 + (TA)n Simple_repeat Simple_repeat 2 75 0 2608 64 0 0 chrX 39281562 39281873 -123318057 - AluY SINE Alu 0 311 1 789 176 53 74 chrX 39281873 39282002 -123317928 + L1ME3A LINE L1 5770 5900 -270 2363 82 3 0 chrX 39282002 39282294 -123317636 + AluSg SINE Alu 1 293 -17 789 176 53 74 chrX 39282294 39282325 -123317605 + L1ME3A LINE L1 5900 5930 -240 1009 219 57 0 chrX 39282325 39282535 -123317395 + MER58A DNA MER1_type 2 223 -1 429 240 10 0 chrX 39282562 39282662 -123317268 - L1ME2 LINE L1 -9 6155 6055 384 136 0 0 chrX 39282670 39282729 -123317201 + L1ME3A LINE L1 5920 5978 -192 2194 46 4 39 chrX 39282835 39283115 -123316815 - AluY SINE Alu -14 297 28 2014 114 3 23 chrX 39283164 39283463 -123316467 + AluJb SINE Alu 1 293 -19 2337 88 0 7 chrX 39283588 39283896 -123316034 + AluY SINE Alu 5 310 -1 1277 151 13 53 chrX 39283979 39284204 -123315726 + MER20 DNA MER1_type 3 218 -1 1526 87 0 5 chrX 39284324 39284519 -123315411 + AluSg/x SINE Alu 115 308 -2 549 188 45 0 chrX 39284556 39284668 -123315262 + MER3 DNA MER1_type 50 166 -43 1085 151 0 0 chrX 39284691 39284843 -123315087 - AluJb SINE Alu -27 285 134 2045 138 0 7 chrX 39284843 39285147 -123314783 - AluJo SINE Alu -9 303 2 247 119 191 0 chrX 39285149 39285191 -123314739 + MER3 DNA MER1_type 159 208 -1 230 219 0 0 chrX 39285162 39285203 -123314727 - MER3 DNA MER1_type -132 77 37 * 507 235 12 54 chrX 39285248 39285353 -123314577 + MIR SINE MIR 74 171 -91 2207 101 24 0 chrX 39285353 39285640 -123314290 + AluSx SINE Alu 1 294 -18 507 235 12 54 chrX 39285640 39285700 -123314230 + MIR SINE MIR 171 232 -30 2338 74 3 23 chrX 39285896 39286221 -123313709 - AluSp SINE Alu 0 313 1 2148 129 0 7 chrX 39286284 39286586 -123313344 + AluSx SINE Alu 1 300 -12 249 189 22 56 chrX 39286626 39286716 -123313214 - L1MC5 LINE L1 -33 7928 7842 332 147 105 53 chrX 39286749 39286844 -123313086 - L1MC5 LINE L1 -30 7931 7832 193 29 29 29 chrX 39286972 39287007 -123312923 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1448 122 5 32 chrX 39287011 39287232 -123312698 - AluJo SINE Alu -16 296 82 405 271 98 25 chrX 39287234 39287470 -123312460 - L1M4 LINE L1 -2268 3878 3626 21 0 0 0 chrX 39287470 39287491 -123312439 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chrX 39287506 39287529 -123312401 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3053 25 6 0 chrX 39287532 39287888 -123312042 - L1PA4 LINE L1 -3 6152 5795 534 46 0 0 chrX 39287888 39287953 -123311977 + L1PA4 LINE L1 5744 5808 -347 2185 111 3 0 chrX 39288064 39288352 -123311578 - AluSp SINE Alu -24 289 1 2333 102 0 0 chrX 39288790 39289083 -123310847 - AluSg SINE Alu -17 293 1 2184 103 0 0 chrX 39289262 39289569 -123310361 - AluSg SINE Alu 0 307 1 1782 174 24 10 chrX 39289587 39289881 -123310049 + AluJb SINE Alu 1 298 -14 334 237 153 23 chrX 39289894 39290025 -123309905 - HAL1 LINE L1 -828 1679 1532 2185 108 0 3 chrX 39290151 39290461 -123309469 - AluSx SINE Alu 0 309 1 2382 100 3 3 chrX 39290565 39290874 -123309056 - AluSg SINE Alu -1 309 1 2217 101 27 0 chrX 39290931 39291228 -123308702 - AluSx SINE Alu -7 305 1 858 150 0 0 chrX 39291246 39291373 -123308557 - FLAM_C SINE Alu -16 127 1 1316 71 12 0 chrX 39291499 39291668 -123308262 - AluSx SINE Alu -16 294 124 1919 165 3 7 chrX 39291668 39291977 -123307953 - AluJb SINE Alu -4 308 1 22 80 0 0 chrX 39291986 39292036 -123307894 + AT_rich Low_complexity Low_complexity 1 50 0 290 235 0 12 chrX 39292075 39292160 -123307770 - L1ME4a LINE L1 -77 6044 5961 3428 94 29 12 chrX 39292268 39292780 -123307150 - L1MA5A LINE L1 -4 6293 5773 2211 91 7 26 chrX 39293512 39293821 -123306109 - AluSq SINE Alu -8 305 3 1183 73 0 0 chrX 39293822 39293958 -123305972 - AluSx SINE Alu -176 136 1 265 256 11 44 chrX 39294273 39294363 -123305567 + L2 LINE L2 3174 3260 -12 2271 117 0 0 chrX 39294617 39294924 -123305006 - AluSg SINE Alu -2 308 2 978 109 8 0 chrX 39295613 39295741 -123304189 - FLAM_C SINE Alu -10 133 5 206 242 0 15 chrX 39295944 39296010 -123303920 + MIR SINE MIR 156 220 -42 1901 145 0 0 chrX 39296221 39296490 -123303440 + AluJo SINE Alu 1 269 -43 1008 223 161 56 chrX 39296555 39297003 -123302927 - MLT1G LTR MaLR -7 583 89 2260 129 6 0 chrX 39297017 39297343 -123302587 - MER51B LTR ERV1 0 377 50 386 121 277 12 chrX 39297359 39297442 -123302488 - MER51A LTR ERV1 -529 105 1 743 158 8 0 chrX 39297504 39297624 -123302306 - MLT1G LTR MaLR -472 123 3 2371 108 0 0 chrX 39297724 39298031 -123301899 - AluSq SINE Alu -6 307 1 2248 101 3 19 chrX 39298152 39298459 -123301471 - AluSg SINE Alu -8 302 1 2254 105 3 0 chrX 39298499 39298793 -123301137 + AluSq SINE Alu 3 297 -16 554 174 101 22 chrX 39298834 39298972 -123300958 + MER3 DNA MER1_type 25 126 -83 1987 149 45 0 chrX 39298989 39299364 -123300566 + MER3 DNA MER1_type 2233 2624 0 342 200 108 83 chrX 39299722 39299802 -123300128 - MIR3 SINE MIR -21 187 102 2403 94 0 0 chrX 39299802 39300100 -123299830 + AluSg SINE Alu 1 298 -12 342 200 108 83 chrX 39300100 39300139 -123299791 - MIR3 SINE MIR -106 102 65 2199 113 0 0 chrX 39300352 39300643 -123299287 - AluSx SINE Alu 0 312 22 1344 169 9 17 chrX 39301061 39301375 -123298555 - MLT1A1 LTR MaLR 0 365 1 2726 101 3 11 chrX 39301448 39301826 -123298104 + THE1C LTR MaLR 1 375 0 10322 100 42 39 chrX 39301826 39303401 -123296529 + THE1C-int LTR MaLR 1 1580 0 2066 127 3 22 chrX 39303401 39303717 -123296213 + THE1C LTR MaLR 1 310 -65 2271 105 7 0 chrX 39303717 39304042 -123295888 - AluSg SINE Alu 0 310 1 1048 128 29 0 chrX 39304042 39304214 -123295716 + L1MB4 LINE L1 6004 6180 0 2147 116 10 3 chrX 39304246 39304549 -123295381 + AluSx SINE Alu 1 305 -7 1047 209 45 11 chrX 39304935 39305203 -123294727 + L1MC5 LINE L1 7637 7913 -48 2162 121 0 0 chrX 39305274 39305564 -123294366 + AluSx SINE Alu 1 290 -22 369 329 61 32 chrX 39305620 39305897 -123294033 + L1MC4a LINE L1 5100 5384 -762 1114 196 104 57 chrX 39305931 39306013 -123293917 - MER2 DNA MER2_type -10 335 258 1614 97 0 31 chrX 39306013 39306240 -123293690 + AluY SINE Alu 92 311 0 1114 196 104 57 chrX 39306240 39306474 -123293456 - MER2 DNA MER2_type -87 258 4 2177 99 0 24 chrX 39306494 39306824 -123293106 + AluSx SINE Alu 1 323 0 947 281 73 47 chrX 39306848 39306913 -123293017 + L1MC4a LINE L1 5404 5466 -2342 2002 92 6 74 chrX 39306913 39307239 -123292691 + AluSx SINE Alu 1 304 -8 947 281 73 47 chrX 39307239 39307668 -123292262 + L1MC4a LINE L1 5466 5911 -1897 276 100 0 0 chrX 39308182 39308222 -123291708 + (TG)n Simple_repeat Simple_repeat 1 40 0 1817 119 0 0 chrX 39308358 39308601 -123291329 - AluSx SINE Alu -69 243 1 36 0 0 0 chrX 39308641 39308677 -123291253 + AT_rich Low_complexity Low_complexity 1 36 0 2180 107 4 0 chrX 39308682 39309000 -123290930 + AluSq SINE Alu 4 322 0 1899 126 4 0 chrX 39309089 39309351 -123290579 + AluJb SINE Alu 1 263 -49 180 0 0 0 chrX 39309360 39309380 -123290550 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 994 276 89 20 chrX 39309517 39309909 -123290021 - MLT1L LTR MaLR -22 593 175 268 330 39 35 chrX 39309982 39310185 -123289745 + L2 LINE L2 2326 2529 -785 956 252 96 37 chrX 39310302 39310790 -123289140 - L1ME4a LINE L1 -4 6117 5601 249 242 15 0 chrX 39310847 39310913 -123289017 - L1MC4 LINE L1 -49 7993 7927 699 278 125 34 chrX 39311087 39311304 -123288626 - L1ME3A LINE L1 -208 5962 5766 2144 93 6 47 chrX 39311304 39311626 -123288304 - AluSg SINE Alu -1 309 1 699 278 125 34 chrX 39311626 39311825 -123288105 - L1ME3A LINE L1 -404 5766 5508 1867 118 30 43 chrX 39311947 39312251 -123287679 - AluSx SINE Alu -12 300 1 239 216 24 104 chrX 39312323 39312379 -123287551 - L1ME4a LINE L1 0 6121 6079 2390 94 7 0 chrX 39312379 39312688 -123287242 + AluSp SINE Alu 1 311 -2 239 216 24 104 chrX 39312688 39312756 -123287174 - L1ME4a LINE L1 -42 6079 6007 * 566 161 55 9 chrX 39312755 39312883 -123287047 + L1MA7 LINE L1 6145 6265 -26 2057 73 26 15 chrX 39312890 39313163 -123286767 - AluSq SINE Alu -8 305 30 1003 149 9 113 chrX 39313171 39313334 -123286596 - AluJo SINE Alu -23 289 111 225 0 0 0 chrX 39313334 39313359 -123286571 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2249 85 0 0 chrX 39313360 39313642 -123286288 - AluSp SINE Alu -31 282 1 1003 149 9 113 chrX 39313642 39313698 -123286232 - AluJo SINE Alu -200 112 91 222 271 45 90 chrX 39314588 39314743 -123285187 + L2 LINE L2 2596 2743 -571 1117 82 0 0 chrX 39314751 39314885 -123285045 + AluSg1 SINE Alu 2 135 -174 2268 79 4 0 chrX 39314885 39315164 -123284766 + AluY SINE Alu 1 320 0 328 25 0 0 chrX 39315164 39315204 -123284726 + (CAAAA)n Simple_repeat Simple_repeat 1 140 0 208 325 99 42 chrX 39315253 39315444 -123284486 + L2 LINE L2 2815 3016 -256 2143 120 0 3 chrX 39315515 39315806 -123284124 + AluSx SINE Alu 1 290 -22 5877 180 23 89 chrX 39315821 39316284 -123283646 + L1MC4 LINE L1 3779 4271 -3771 1109 83 0 0 chrX 39316284 39316416 -123283514 + AluSq/x SINE Alu 1 132 -180 2061 117 32 0 chrX 39316416 39316698 -123283232 + AluSx SINE Alu 6 296 -16 5877 180 23 89 chrX 39316698 39316906 -123283024 + L1MC4 LINE L1 4270 4490 -3552 2319 98 0 3 chrX 39316906 39317212 -123282718 + AluSg SINE Alu 1 305 -5 5877 180 23 89 chrX 39317212 39318302 -123281628 + L1MC4 LINE L1 4490 7384 -658 1876 85 101 0 chrX 39318302 39318602 -123281328 + AluSx SINE Alu 1 326 0 1215 114 6 0 chrX 39318602 39318778 -123281152 + AluSq SINE Alu 134 310 -3 4527 107 16 15 chrX 39318783 39319218 -123280712 + L1PB3 LINE L1 5477 5915 -239 2268 88 0 56 chrX 39319218 39319538 -123280392 - AluSx SINE Alu -10 302 1 4527 107 16 15 chrX 39319538 39319778 -123280152 + L1PB3 LINE L1 5915 6153 -1 1960 232 39 76 chrX 39319782 39319958 -123279972 + L1MC4 LINE L1 7372 7553 -489 2603 58 0 3 chrX 39319958 39320267 -123279663 - AluY SINE Alu -3 308 1 1960 232 39 76 chrX 39320267 39320787 -123279143 + L1MC4 LINE L1 7553 8042 0 192 77 0 0 chrX 39321471 39321497 -123278433 + (A)n Simple_repeat Simple_repeat 1 26 0 2446 87 0 3 chrX 39321693 39322005 -123277925 + AluSp SINE Alu 1 311 -2 1718 126 84 0 chrX 39322547 39322809 -123277121 + AluSx SINE Alu 1 284 -28 230 181 340 21 chrX 39325181 39325275 -123274655 + MIR SINE MIR 108 231 -31 1171 99 0 12 chrX 39325468 39325630 -123274300 + AluSc SINE Alu 137 296 -13 203 229 0 0 chrX 39325927 39325962 -123273968 + polypurine Low_complexity Low_complexity 2 36 0 210 71 0 0 chrX 39326265 39326293 -123273637 + (TG)n Simple_repeat Simple_repeat 2 29 0 1246 194 172 58 chrX 39326296 39326498 -123273432 - L1ME1 LINE L1 -3 6163 5985 2363 83 0 3 chrX 39326498 39326800 -123273130 - AluSg SINE Alu -9 301 1 1246 194 172 58 chrX 39326800 39326973 -123272957 - L1ME1 LINE L1 -181 5985 5735 2055 153 30 89 chrX 39326973 39327136 -123272794 - MLT1C LTR MaLR -1 466 295 2544 76 0 0 chrX 39327136 39327439 -123272491 - AluSx SINE Alu -9 303 1 2055 153 30 89 chrX 39327439 39327770 -123272160 - MLT1C LTR MaLR -172 295 1 1246 194 172 58 chrX 39327770 39327806 -123272124 - L1ME1 LINE L1 -431 5735 5704 308 275 108 0 chrX 39327888 39328008 -123271922 - MIR SINE MIR 0 262 130 2300 97 0 0 chrX 39328116 39328414 -123271516 - AluSp SINE Alu -15 298 1 2498 28 0 3 chrX 39328478 39328785 -123271145 - AluY SINE Alu 0 306 1 2138 78 3 21 chrX 39328792 39329031 -123270899 - AluSx SINE Alu 0 372 130 180 0 0 0 chrX 39329031 39329051 -123270879 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2095 97 0 38 chrX 39329051 39329341 -123270589 - AluSg SINE Alu -31 279 1 2138 78 3 21 chrX 39329341 39329442 -123270488 - AluSx SINE Alu -240 132 36 193 0 61 30 chrX 39329526 39329559 -123270371 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2221 89 4 0 chrX 39329561 39329842 -123270088 - AluSp SINE Alu -31 282 1 244 244 76 42 chrX 39330227 39330346 -123269584 - L1MC4 LINE L1 -426 7616 7494 * 405 269 0 0 chrX 39330319 39330427 -123269503 - L1MC5 LINE L1 -543 7418 7311 2015 134 10 3 chrX 39330435 39330727 -123269203 - AluSx SINE Alu -18 294 1 852 218 118 3 chrX 39330727 39331000 -123268930 - L1MC4 LINE L1 -552 7490 7181 362 284 16 8 chrX 39331380 39331507 -123268423 - LTR33A LTR ERVL 0 523 396 2237 103 0 35 chrX 39331715 39332027 -123267903 - AluSx SINE Alu -11 301 1 2368 94 0 3 chrX 39332815 39333112 -123266818 - AluSp SINE Alu -17 296 1 21 0 0 0 chrX 39333121 39333142 -123266788 + AT_rich Low_complexity Low_complexity 1 21 0 439 101 0 0 chrX 39333355 39333424 -123266506 - Alu SINE Alu -1 310 242 1732 255 45 47 chrX 39333434 39333708 -123266222 - L1MC4 LINE L1 -1875 5933 5660 2141 110 3 3 chrX 39333708 39333999 -123265931 + AluSg SINE Alu 1 291 -19 1732 255 45 47 chrX 39333999 39334363 -123265567 - L1MC4 LINE L1 -2148 5660 5296 767 129 0 8 chrX 39334637 39334761 -123265169 - AluJb SINE Alu -188 124 2 2215 110 0 0 chrX 39334773 39335065 -123264865 - AluSg SINE Alu -18 292 1 2259 94 0 0 chrX 39335112 39335399 -123264531 + AluSg SINE Alu 1 287 -23 21 0 0 0 chrX 39335647 39335668 -123264262 + AT_rich Low_complexity Low_complexity 1 21 0 1828 98 0 4 chrX 39335697 39335933 -123263997 - AluSq SINE Alu -78 235 1 2207 160 70 8 chrX 39335988 39336375 -123263555 + MLT2C2 LTR ERVL 1 411 -53 2393 79 3 3 chrX 39336377 39336682 -123263248 - AluSp SINE Alu -8 305 1 2188 88 0 18 chrX 39337019 39337304 -123262626 + AluSx SINE Alu 1 280 -32 317 0 0 65 chrX 39337311 39337357 -123262573 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 2254 105 3 0 chrX 39337536 39337831 -123262099 + AluSq SINE Alu 1 296 -17 2594 53 3 0 chrX 39337834 39338136 -123261794 + AluY SINE Alu 1 303 -8 1147 102 7 0 chrX 39338195 39338342 -123261588 - AluSq/x SINE Alu -164 148 1 2281 97 0 13 chrX 39338525 39338835 -123261095 - AluSc SINE Alu -3 306 1 1497 173 103 0 chrX 39338891 39339162 -123260768 - AluJb SINE Alu -13 299 1 2264 82 3 0 chrX 39339171 39339475 -123260455 - AluSp SINE Alu 0 305 1 238 225 154 50 chrX 39339475 39339657 -123260273 - HAL1b LINE L1 -671 677 477 247 244 65 113 chrX 39339801 39339878 -123260052 - HAL1b LINE L1 -1053 295 216 2237 110 0 13 chrX 39339878 39340187 -123259743 + AluSg SINE Alu 1 305 -5 247 244 65 113 chrX 39340187 39340339 -123259591 - HAL1b LINE L1 -1132 216 77 789 210 34 23 chrX 39340944 39341120 -123258810 - MER45A DNA AcHobo 0 178 1 10977 172 55 41 chrX 39341697 39342059 -123257871 - Cheshire DNA MER1_type -1 2419 2064 2072 103 33 17 chrX 39342059 39342359 -123257571 + AluSx SINE Alu 1 305 -7 10977 172 55 41 chrX 39342359 39343399 -123256531 - Cheshire DNA MER1_type -356 2064 1040 2347 100 0 0 chrX 39343399 39343700 -123256230 - AluSg1 SINE Alu -8 301 1 10977 172 55 41 chrX 39343700 39343992 -123255938 - Cheshire DNA MER1_type -1380 1040 754 2399 88 0 3 chrX 39343992 39344298 -123255632 - AluSc SINE Alu -4 305 1 10977 172 55 41 chrX 39344298 39344584 -123255346 - Cheshire DNA MER1_type -1666 754 474 2092 107 0 7 chrX 39344584 39344894 -123255036 - AluSc SINE Alu 0 308 1 10977 172 55 41 chrX 39344894 39345231 -123254699 - Cheshire DNA MER1_type -1946 474 1 1866 79 26 140 chrX 39345635 39345977 -123253953 - AluSq SINE Alu 0 303 1 1103 149 15 109 chrX 39346153 39346350 -123253580 - L1MDa LINE L1 -4941 1599 1444 2260 115 7 0 chrX 39346350 39346655 -123253275 - AluSx SINE Alu -5 307 1 1103 149 15 109 chrX 39346655 39346786 -123253144 - L1MDa LINE L1 -5096 1444 1302 2009 126 3 11 chrX 39347354 39347663 -123252267 - AluSx SINE Alu 0 307 1 1928 224 90 59 chrX 39347664 39347808 -123252122 - L1MDa LINE L1 -5368 1172 1034 2217 114 7 10 chrX 39347808 39348115 -123251815 - AluSx SINE Alu -6 306 1 1928 224 90 59 chrX 39348115 39348595 -123251335 - L1MDa LINE L1 -5506 1034 529 23 0 0 0 chrX 39349080 39349103 -123250827 + AT_rich Low_complexity Low_complexity 1 23 0 2190 120 0 7 chrX 39349228 39349528 -123250402 - AluSx SINE Alu -14 298 1 415 318 78 12 chrX 39349763 39349960 -123249970 - MIR SINE MIR -52 210 3 271 228 69 13 chrX 39350200 39350285 -123249645 - MIR SINE MIR -88 120 30 2159 41 94 0 chrX 39350370 39350636 -123249294 - AluY SINE Alu -20 291 1 2017 92 44 20 chrX 39350639 39350933 -123248997 - AluSg SINE Alu -9 301 1 291 54 0 0 chrX 39351037 39351074 -123248856 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chrX 39351424 39351445 -123248485 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 39352389 39352418 -123247512 + GC_rich Low_complexity Low_complexity 1 29 0 225 139 0 0 chrX 39352975 39353018 -123246912 + (CCG)n Simple_repeat Simple_repeat 3 45 0 180 111 0 0 chrX 39353191 39353218 -123246712 + (CCG)n Simple_repeat Simple_repeat 3 29 0 30 27 0 0 chrX 39353644 39353681 -123246249 + GC_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrX 39355205 39355234 -123244696 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 39356040 39356069 -123243861 + AT_rich Low_complexity Low_complexity 1 29 0 234 322 0 0 chrX 39356495 39356585 -123243345 + L1MC4 LINE L1 6614 6703 -1339 281 307 0 0 chrX 39356592 39356680 -123243250 - L1MC4 LINE L1 -1340 6702 6615 261 233 47 23 chrX 39356641 39356727 -123243203 + L1MC4 LINE L1 6614 6701 -1341 * 1465 119 78 0 chrX 39357698 39357917 -123242013 - MER46A DNA MER2_type 0 236 1 1966 139 7 7 chrX 39358336 39358638 -123241292 - AluSx SINE Alu -10 302 1 2484 87 0 0 chrX 39359507 39359807 -123240123 + AluSx SINE Alu 1 300 -12 2243 109 0 3 chrX 39360125 39360428 -123239502 + AluSx SINE Alu 1 302 -10 2324 80 10 7 chrX 39360769 39361071 -123238859 + AluSg SINE Alu 1 303 -7 2111 132 0 0 chrX 39361300 39361604 -123238326 - AluSq SINE Alu -9 304 1 446 216 216 26 chrX 39361864 39362058 -123237872 - L1MC5 LINE L1 -103 7858 7628 182 272 184 0 chrX 39362387 39362490 -123237440 - L2 LINE L2 -15 3257 3136 1761 147 3 30 chrX 39362682 39362981 -123236949 - AluJb SINE Alu -15 297 7 2209 113 0 3 chrX 39362997 39363290 -123236640 - AluSx SINE Alu -20 292 1 2471 78 3 10 chrX 39363436 39363745 -123236185 + AluSp SINE Alu 3 309 -4 448 292 57 26 chrX 39364034 39364226 -123235704 + MIR SINE MIR 49 246 -16 350 297 226 19 chrX 39364457 39364647 -123235283 + L2 LINE L2 2283 2432 -882 1486 190 37 7 chrX 39364647 39364942 -123234988 - AluJb SINE Alu -8 304 1 350 297 226 19 chrX 39364942 39365017 -123234913 + L2 LINE L2 2432 2603 -711 458 115 0 0 chrX 39365121 39365182 -123234748 + U6 snRNA snRNA 1 61 -46 21 0 0 0 chrX 39365182 39365203 -123234727 + AT_rich Low_complexity Low_complexity 1 21 0 2194 93 7 10 chrX 39365205 39365496 -123234434 + AluSg SINE Alu 1 290 -20 2081 110 28 0 chrX 39365682 39365964 -123233966 - AluSg SINE Alu -20 290 1 2380 87 0 3 chrX 39366108 39366407 -123233523 - AluSx SINE Alu -14 298 1 1687 149 64 7 chrX 39366554 39366836 -123233094 - AluSx SINE Alu -14 298 1 1021 193 63 42 chrX 39367400 39367639 -123232291 + AluJo SINE Alu 64 307 -5 2263 88 0 3 chrX 39367641 39367937 -123231993 + AluSg1 SINE Alu 1 295 -14 198 0 0 0 chrX 39368630 39368652 -123231278 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1954 143 4 0 chrX 39368652 39368931 -123230999 - AluSx SINE Alu -32 280 1 24 0 0 0 chrX 39369077 39369101 -123230829 + AT_rich Low_complexity Low_complexity 1 24 0 4176 172 74 19 chrX 39369470 39370259 -123229671 - L1MD1 LINE L1 -12 6624 5745 2253 86 36 0 chrX 39370259 39370560 -123229370 - AluSq SINE Alu -1 312 1 4176 172 74 19 chrX 39370560 39370909 -123229021 - L1MD1 LINE L1 -891 5745 5417 884 249 12 8 chrX 39370918 39371163 -123228767 - L1MD1 LINE L1 -1163 5377 5132 4426 51 7 10 chrX 39371165 39371750 -123228180 - LTR10C LTR ERV1 0 591 9 810 248 113 54 chrX 39371750 39371893 -123228037 - L1MD1 LINE L1 -1406 5134 5001 1894 131 13 29 chrX 39371893 39372023 -123227907 + AluSx SINE Alu 1 132 -180 2362 74 0 13 chrX 39372023 39372335 -123227595 + AluY SINE Alu 1 308 -3 2321 99 3 0 chrX 39372340 39372642 -123227288 + AluSx SINE Alu 3 305 -7 1894 131 13 29 chrX 39372642 39372819 -123227111 + AluSx SINE Alu 136 309 -3 810 248 113 54 chrX 39372819 39373118 -123226812 - L1MD1 LINE L1 -1539 5001 4666 1742 91 0 0 chrX 39373126 39373347 -123226583 - AluY SINE Alu -12 299 79 1437 200 76 125 chrX 39373376 39374217 -123225713 - L1MD1 LINE L1 -2120 4420 3621 198 0 0 0 chrX 39374218 39374240 -123225690 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1136 89 19 0 chrX 39374240 39374397 -123225533 - AluSg/x SINE Alu -18 294 135 2043 92 53 0 chrX 39374398 39374682 -123225248 - AluSq SINE Alu -13 300 2 423 0 0 0 chrX 39374691 39374738 -123225192 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2098 78 0 48 chrX 39374740 39375035 -123224895 - AluY SINE Alu -30 281 1 683 208 84 45 chrX 39375044 39375424 -123224506 - L1MD1 LINE L1 -2931 3609 3215 3615 184 83 70 chrX 39375440 39375692 -123224238 - L1MD1 LINE L1 -4062 2478 2231 2351 66 0 13 chrX 39375692 39375993 -123223937 - AluY SINE Alu -14 297 1 3615 184 83 70 chrX 39375993 39377188 -123222742 - L1MD1 LINE L1 -4309 2231 1013 1423 215 13 30 chrX 39377190 39377488 -123222442 - AluJo SINE Alu -19 293 1 507 303 124 113 chrX 39377946 39378621 -123221309 - L1MD1 LINE L1 -5602 938 393 312 48 0 0 chrX 39378621 39378663 -123221267 + (TG)n Simple_repeat Simple_repeat 2 43 0 507 303 124 113 chrX 39378663 39378743 -123221187 - L1MD1 LINE L1 -6147 393 315 444 37 0 0 chrX 39378827 39378881 -123221049 + (TG)n Simple_repeat Simple_repeat 2 55 0 931 274 15 38 chrX 39379042 39379433 -123220497 - L1MD1 LINE L1 -6142 398 17 1995 104 57 0 chrX 39380233 39380512 -123219418 + AluSg SINE Alu 1 295 -15 1692 188 69 112 chrX 39380559 39380715 -123219215 - L1M4 LINE L1 -3242 3402 3241 1871 98 98 4 chrX 39380715 39380979 -123218951 + AluSx SINE Alu 1 289 -23 1692 188 69 112 chrX 39380979 39381561 -123218369 - L1M4 LINE L1 -3403 3241 2747 2204 108 3 10 chrX 39381561 39381858 -123218072 + AluSx SINE Alu 1 295 -17 1692 188 69 112 chrX 39381858 39382002 -123217928 - L1M4 LINE L1 -3897 2747 2598 2342 86 7 0 chrX 39382013 39382304 -123217626 - AluSx SINE Alu -19 293 1 1471 224 42 20 chrX 39382333 39382690 -123217240 - MLT1A1 LTR MaLR 0 365 1 4310 223 110 49 chrX 39382698 39384633 -123215297 - L1M4 LINE L1 -4571 2075 2 315 321 104 64 chrX 39384654 39384848 -123215082 - L1MC4a LINE L1 -1211 6597 6412 1558 149 133 3 chrX 39384848 39385156 -123214774 + MER7A DNA MER2_type 1 346 0 315 321 104 64 chrX 39385156 39385335 -123214595 - L1MC4a LINE L1 -1396 6412 6209 1663 182 14 10 chrX 39385769 39386066 -123213864 - AluJb SINE Alu -14 298 1 26 74 0 0 chrX 39386181 39386235 -123213695 + AT_rich Low_complexity Low_complexity 1 54 0 198 103 0 0 chrX 39386267 39386296 -123213634 + (TG)n Simple_repeat Simple_repeat 2 30 0 210 37 0 0 chrX 39386300 39386327 -123213603 + (GA)n Simple_repeat Simple_repeat 2 28 0 580 131 50 0 chrX 39386328 39386427 -123213503 - AluSq/x SINE Alu -202 111 8 249 244 204 18 chrX 39386521 39386742 -123213188 - HAL1 LINE L1 -123 2384 2123 240 154 0 0 chrX 39386852 39386891 -123213039 - HAL1 LINE L1 -550 1957 1919 1194 118 0 0 chrX 39386891 39387061 -123212869 - AluSq SINE Alu -11 302 133 216 0 0 0 chrX 39387061 39387085 -123212845 + (TG)n Simple_repeat Simple_repeat 1 24 0 1663 115 130 7 chrX 39387086 39387363 -123212567 - AluSx SINE Alu 0 310 1 237 118 118 0 chrX 39387431 39387482 -123212448 - HAL1 LINE L1 -651 1856 1800 1366 222 187 16 chrX 39387885 39388414 -123211516 - MLT1G LTR MaLR 0 590 13 982 257 41 55 chrX 39388558 39388974 -123210956 - L1ME3A LINE L1 -11 6159 5750 1740 112 4 12 chrX 39389812 39390062 -123209868 - AluSq SINE Alu -23 290 43 10060 45 6 126 chrX 39390119 39391688 -123208242 - SVA Other Other -5 1381 1 2166 111 7 7 chrX 39391697 39392004 -123207926 - AluSp SINE Alu -6 307 1 281 279 15 0 chrX 39392560 39392628 -123207302 + MIR SINE MIR 86 154 -108 1762 137 32 35 chrX 39392628 39392914 -123207016 + Tigger2a DNA MER2_type 1 287 -2421 2306 82 0 16 chrX 39392914 39393218 -123206712 - AluSq SINE Alu -14 299 1 1762 137 32 35 chrX 39393218 39393275 -123206655 + Tigger2a DNA MER2_type 287 343 -91 212 302 0 0 chrX 39393344 39393397 -123206533 + (TA)n Simple_repeat Simple_repeat 1 53 0 1093 246 72 36 chrX 39393417 39393793 -123206137 + LTR10C LTR ERV1 188 590 -43 468 183 0 21 chrX 39393811 39393904 -123206026 + Tigger2a DNA MER2_type 340 430 -4 322 207 92 23 chrX 39393907 39393994 -123205936 + MIR SINE MIR 155 247 -15 217 213 0 43 chrX 39394236 39394283 -123205647 + MIR SINE MIR 58 102 -160 2376 170 64 28 chrX 39395143 39395829 -123204101 + Tigger7 DNA MER2_type 11 2587 0 222 118 0 0 chrX 39396002 39396036 -123203894 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 1883 154 6 28 chrX 39396245 39396564 -123203366 - AluJo SINE Alu 0 312 1 2119 106 7 10 chrX 39396641 39396942 -123202988 - AluSx SINE Alu -12 300 1 412 259 0 69 chrX 39397266 39397397 -123202533 - MIR SINE MIR -94 168 47 26 30 0 0 chrX 39397775 39397808 -123202122 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 39398176 39398199 -123201731 + AT_rich Low_complexity Low_complexity 1 23 0 1956 151 109 2 chrX 39398661 39399093 -123200837 - L1MC3 LINE L1 -1 7784 7307 363 169 45 11 chrX 39399095 39399184 -123200746 - L1MC3 LINE L1 -655 7130 7039 1395 238 193 19 chrX 39399185 39399257 -123200673 - L1MEc LINE L1 -3152 3063 3005 1904 93 116 8 chrX 39399257 39399525 -123200405 - AluSg SINE Alu -13 297 1 1395 238 193 19 chrX 39399525 39400042 -123199888 - L1MEc LINE L1 -3210 3005 2331 2462 71 7 0 chrX 39400042 39400351 -123199579 - AluY SINE Alu 0 311 1 1395 238 193 19 chrX 39400351 39400461 -123199469 - L1MEc LINE L1 -3884 2331 2241 2345 99 3 13 chrX 39400479 39400792 -123199138 - AluSg SINE Alu 0 310 1 2022 208 54 88 chrX 39400802 39401650 -123198280 - L1MD2 LINE L1 0 6242 5367 1835 110 21 45 chrX 39401650 39401940 -123197990 - AluSx SINE Alu 0 312 30 2022 208 54 88 chrX 39401940 39402085 -123197845 - L1MD2 LINE L1 -875 5367 5316 2289 100 0 0 chrX 39402085 39402384 -123197546 - AluSx SINE Alu -13 299 1 2022 208 54 88 chrX 39402384 39402444 -123197486 - L1MD2 LINE L1 -926 5316 5255 833 273 53 47 chrX 39402506 39403150 -123196780 - L1MEc LINE L1 -4663 1733 1086 1232 115 0 0 chrX 39403154 39403319 -123196611 - AluSg/x SINE Alu -6 306 142 189 0 0 0 chrX 39403332 39403353 -123196577 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1966 130 0 7 chrX 39403353 39403638 -123196292 - AluSx SINE Alu -29 283 1 1657 246 108 66 chrX 39403638 39404264 -123195666 - L1MEc LINE L1 -5302 1094 495 378 0 0 0 chrX 39404264 39404306 -123195624 + (TG)n Simple_repeat Simple_repeat 2 43 0 1698 196 17 0 chrX 39404313 39404604 -123195326 - AluJo SINE Alu -16 296 1 1657 246 108 66 chrX 39404604 39404625 -123195305 - L1MEc LINE L1 -5906 490 471 525 138 85 23 chrX 39404625 39404755 -123195175 - L1MA3 LINE L1 0 6305 6168 1657 246 108 66 chrX 39404755 39405112 -123194818 - L1MEc LINE L1 -5925 471 39 204 40 0 0 chrX 39405673 39405698 -123194232 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1833 154 0 20 chrX 39405700 39405992 -123193938 - AluSx SINE Alu -26 286 1 485 244 64 26 chrX 39406522 39406678 -123193252 + MIR SINE MIR 100 261 -1 247 250 53 13 chrX 39406786 39406862 -123193068 - HAL1 LINE L1 -8 2499 2421 561 147 0 11 chrX 39406864 39406959 -123192971 + MER2 DNA MER2_type 245 338 -7 489 310 84 46 chrX 39407008 39407401 -123192529 + L1M4 LINE L1 484 891 -5651 420 247 132 17 chrX 39407462 39407636 -123192294 + L1M4 LINE L1 899 1092 -5454 565 260 59 12 chrX 39407640 39407894 -123192036 + L1MC4 LINE L1 7584 7849 -193 371 157 98 10 chrX 39407937 39408039 -123191891 + L1MC4 LINE L1 7932 8042 0 2047 88 0 4 chrX 39408558 39408818 -123191112 - AluSc SINE Alu -23 286 28 2691 178 65 43 chrX 39408946 39409447 -123190483 - L1ME1 LINE L1 -181 5985 5447 964 110 39 0 chrX 39409447 39409601 -123190329 - L1PA12 LINE L1 0 6168 6009 2691 178 65 43 chrX 39409601 39409956 -123189974 - L1ME1 LINE L1 -719 5447 5101 2512 166 21 56 chrX 39410626 39410688 -123189242 + L1MB2 LINE L1 5621 5684 -487 1936 86 43 47 chrX 39410688 39410989 -123188941 - AluSx SINE Alu -12 300 1 2512 166 21 56 chrX 39410989 39411493 -123188437 + L1MB2 LINE L1 5684 6167 -4 2148 117 0 49 chrX 39411700 39412026 -123187904 - AluSx SINE Alu -2 310 1 180 299 42 69 chrX 39412105 39412249 -123187681 + L2 LINE L2 1944 2083 -1231 264 155 41 124 chrX 39412439 39412492 -123187438 - HAL1 LINE L1 -112 2395 2352 2391 87 7 0 chrX 39412492 39412801 -123187129 - AluSq SINE Alu -2 311 1 264 155 41 124 chrX 39412801 39412844 -123187086 - HAL1 LINE L1 -155 2352 2307 2294 87 0 22 chrX 39412876 39413188 -123186742 - AluSg SINE Alu -5 305 1 2090 139 0 0 chrX 39413192 39413493 -123186437 - AluSx SINE Alu -11 301 1 352 217 179 9 chrX 39413924 39414136 -123185794 - HAL1 LINE L1 -876 1631 1384 313 156 0 47 chrX 39415068 39415132 -123184798 - Charlie1 DNA MER1_type -774 1987 1927 513 273 143 13 chrX 39415135 39415289 -123184641 - MIR SINE MIR -63 199 26 657 203 107 38 chrX 39415596 39415940 -123183990 - MLT1D LTR MaLR 0 505 64 1766 125 131 3 chrX 39416205 39416525 -123183405 - MER46B DNA MER2_type 0 236 1 12961 124 34 54 chrX 39416925 39417597 -123182333 + Tigger1 DNA MER2_type 22 706 -1712 1607 162 58 11 chrX 39417597 39417875 -123182055 - AluJo SINE Alu -21 291 1 12961 124 34 54 chrX 39417875 39419648 -123180282 + Tigger1 DNA MER2_type 706 2418 0 2110 127 0 3 chrX 39419678 39419969 -123179961 - AluSx SINE Alu -22 290 1 1926 198 135 34 chrX 39419970 39420369 -123179561 - Charlie1 DNA MER1_type -678 2083 1726 2322 93 3 0 chrX 39420369 39420670 -123179260 + AluSp SINE Alu 1 302 -11 1926 198 135 34 chrX 39420670 39420961 -123178969 - Charlie1 DNA MER1_type -1035 1726 1 2335 74 10 7 chrX 39421097 39421393 -123178537 - AluY SINE Alu -13 298 2 927 223 155 76 chrX 39421614 39421654 -123178276 - L1M4 LINE L1 -1205 4941 4906 2330 78 0 7 chrX 39421654 39421948 -123177982 - AluSc SINE Alu -17 292 1 927 223 155 76 chrX 39421948 39422500 -123177430 - L1M4 LINE L1 -1240 4906 4302 616 210 65 28 chrX 39422516 39422730 -123177200 - L1MEc LINE L1 -4331 2065 1844 1094 136 14 38 chrX 39422763 39422976 -123176954 - Tigger1 DNA MER2_type -2 2416 2209 505 107 291 0 chrX 39423008 39423111 -123176819 - Tigger1 DNA MER2_type -2285 133 1 2253 192 21 10 chrX 39423157 39423642 -123176288 - L1ME1 LINE L1 -256 5910 5421 1150 209 66 68 chrX 39423640 39423685 -123176245 - L1ME1 LINE L1 -1383 4763 4719 * 2035 118 4 0 chrX 39423685 39423964 -123175966 + AluSq SINE Alu 1 280 -33 1150 209 66 68 chrX 39423964 39424435 -123175495 - L1ME1 LINE L1 -1427 4719 4248 960 230 30 8 chrX 39424446 39424711 -123175219 - L1MEc LINE L1 -4533 1863 1593 526 231 96 5 chrX 39424856 39425055 -123174875 - L1MEc LINE L1 -6144 252 36 2109 128 21 0 chrX 39425716 39426006 -123173924 - AluSx SINE Alu -16 296 1 464 270 99 12 chrX 39426040 39426362 -123173568 - L1M4 LINE L1 -855 5291 4942 321 252 195 0 chrX 39426552 39426711 -123173219 - L1M4 LINE L1 -3819 2327 2138 2280 60 49 3 chrX 39427008 39427292 -123172638 - AluY SINE Alu -14 297 1 29 28 0 0 chrX 39428669 39428705 -123171225 + AT_rich Low_complexity Low_complexity 1 36 0 1776 143 17 20 chrX 39428725 39429026 -123170904 + AluJb SINE Alu 1 300 -12 2263 74 3 17 chrX 39429637 39429935 -123169995 - AluSg SINE Alu -16 294 1 267 54 0 0 chrX 39430194 39430231 -123169699 + (TG)n Simple_repeat Simple_repeat 1 37 0 3990 54 6 12 chrX 39430369 39430885 -123169045 + LTR10D LTR ERV1 1 513 0 655 227 118 45 chrX 39431418 39431638 -123168292 + MIR SINE MIR 25 260 -2 2203 110 0 3 chrX 39431888 39432189 -123167741 - AluSq SINE Alu -13 300 1 1373 151 83 30 chrX 39432382 39432679 -123167251 - AluJo SINE Alu 0 316 6 189 74 0 0 chrX 39432683 39432710 -123167220 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 427 263 79 0 chrX 39432924 39433091 -123166839 - MLT1J LTR MaLR -290 173 15 1789 132 53 4 chrX 39433421 39433687 -123166243 + AluJb SINE Alu 17 295 -17 550 117 225 8 chrX 39435127 39435247 -123164683 - L1MB2 LINE L1 -14 6157 6012 32 43 0 0 chrX 39435409 39435455 -123164475 + AT_rich Low_complexity Low_complexity 1 46 0 379 326 169 4 chrX 39435680 39435953 -123163977 - L3 LINE CR1 -267 1310 993 229 280 0 0 chrX 39435976 39436026 -123163904 + polypyrimidine Low_complexity Low_complexity 1 50 0 1548 174 7 33 chrX 39436027 39436326 -123163604 - AluJo SINE Alu -21 291 1 228 347 33 8 chrX 39436330 39436451 -123163479 - L3 LINE CR1 -615 962 839 2284 106 0 0 chrX 39436474 39436776 -123163154 + AluSq SINE Alu 11 312 -1 862 166 57 26 chrX 39437500 39437693 -123162237 - MER3 DNA MER1_type 0 209 11 2265 93 0 3 chrX 39437798 39438098 -123161832 - AluY SINE Alu -12 299 1 225 0 0 0 chrX 39438221 39438246 -123161684 + (T)n Simple_repeat Simple_repeat 1 25 0 318 50 0 0 chrX 39438247 39438287 -123161643 - MER4E LTR ERV1 -74 692 653 231 307 23 34 chrX 39441944 39442032 -123157898 + MIR SINE MIR 60 146 -116 21 0 0 0 chrX 39442150 39442171 -123157759 + AT_rich Low_complexity Low_complexity 1 21 0 3319 136 29 7 chrX 39442216 39442796 -123157134 - Tigger1 DNA MER2_type -1 2417 1825 1658 162 51 30 chrX 39442797 39443093 -123156837 + AluJo SINE Alu 1 302 -10 8909 126 14 7 chrX 39443093 39444538 -123155392 - Tigger1 DNA MER2_type -963 1455 1 2100 131 0 10 chrX 39444761 39445067 -123154863 - AluJo SINE Alu -9 303 1 2599 43 0 3 chrX 39445494 39445794 -123154136 - AluY SINE Alu -12 299 1 883 277 106 6 chrX 39446649 39446978 -123152952 - LTR16A LTR ERVL -64 386 25 2325 100 3 0 chrX 39447313 39447614 -123152316 + AluSp SINE Alu 1 302 -11 2605 48 3 0 chrX 39448030 39448340 -123151590 - AluY SINE Alu 0 311 1 27 49 0 0 chrX 39449003 39449044 -123150886 + AT_rich Low_complexity Low_complexity 1 41 0 249 240 0 0 chrX 39449258 39449308 -123150622 - MLT1J LTR MaLR -112 399 350 306 265 130 19 chrX 39449312 39449511 -123150419 - MLT1L LTR MaLR -8 605 352 1862 103 95 129 chrX 39450187 39450690 -123149240 - LTR21A LTR ERV1 -19 486 1 2309 92 3 0 chrX 39451378 39451671 -123148259 + AluSx SINE Alu 1 294 -18 997 246 264 38 chrX 39451885 39452762 -123147168 - HAL1 LINE L1 -657 1850 775 474 125 4 63 chrX 39453996 39454094 -123145836 - L1M3c LINE L1 -5109 1032 933 375 204 0 31 chrX 39454240 39454338 -123145592 - L1MB8 LINE L1 -7 6171 6077 280 175 0 0 chrX 39454338 39454395 -123145535 + LTR28 LTR ERV1 1 57 -963 * 1531 162 65 58 chrX 39454367 39454780 -123145150 + MER61C LTR ERV1 14 429 -5 2199 162 23 36 chrX 39454850 39455049 -123144881 - L1MB8 LINE L1 -190 5994 5794 1370 167 160 17 chrX 39455049 39455349 -123144581 + MER2 DNA MER2_type 2 344 0 2199 162 23 36 chrX 39455349 39455674 -123144256 - L1MB8 LINE L1 -390 5794 5477 548 165 0 66 chrX 39455716 39455837 -123144093 - L1MB8 LINE L1 -981 5165 5053 587 236 120 82 chrX 39455858 39455930 -123144000 - L1MC/D LINE L1 -2076 5732 5664 1887 147 0 33 chrX 39455930 39456229 -123143701 - AluJo SINE Alu -23 289 1 587 236 120 82 chrX 39456229 39456580 -123143350 - L1MC/D LINE L1 -2144 5664 5293 709 344 61 33 chrX 39456600 39457243 -123142687 - L1MC/D LINE L1 -875 5271 4611 2092 209 91 12 chrX 39457323 39457917 -123142013 - L1ME1 LINE L1 -63 6103 5463 227 253 0 45 chrX 39457927 39458081 -123141849 + CT-rich Low_complexity Low_complexity 1 147 0 2054 241 134 44 chrX 39458105 39458651 -123141279 - L1ME1 LINE L1 -845 5301 4806 2287 73 7 7 chrX 39458651 39458951 -123140979 - AluSc SINE Alu -1 308 9 2054 241 134 44 chrX 39458951 39459643 -123140287 - L1ME1 LINE L1 -1340 4806 3951 3332 166 87 10 chrX 39459704 39460392 -123139538 - MER21B LTR ERV1 -20 843 103 310 183 0 28 chrX 39460392 39460463 -123139467 - MER21B LTR ERV1 -708 155 87 1978 93 7 11 chrX 39460465 39460734 -123139196 + AluSx SINE Alu 1 268 -44 307 88 281 0 chrX 39461159 39461216 -123138714 + MADE1 DNA Mariner 1 73 -7 209 372 61 39 chrX 39461805 39461985 -123137945 - MIR3 SINE MIR -9 199 16 189 0 0 0 chrX 39462073 39462094 -123137836 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 39118 42 4 1 chrX 39462094 39468212 -123131718 - L1PA4 LINE L1 -16 6139 3 480 162 30 0 chrX 39468511 39468610 -123131320 - MER58 DNA MER1_type 0 2420 2319 240 200 243 0 chrX 39468616 39468686 -123131244 - MER58 DNA MER1_type -2333 87 1 1984 112 3 37 chrX 39468921 39469254 -123130676 + AluSx SINE Alu 2 324 0 465 325 86 23 chrX 39469262 39469564 -123130366 - L1MC/D LINE L1 -1665 4481 4161 353 149 15 0 chrX 39469964 39470031 -123129899 + CT-rich Low_complexity Low_complexity 1 68 0 335 298 44 85 chrX 39470065 39470313 -123129617 - L1MC5 LINE L1 -385 7576 7339 2161 98 11 17 chrX 39470337 39470652 -123129278 - AluSq SINE Alu 0 313 1 2471 77 6 0 chrX 39470875 39471186 -123128744 - AluSp SINE Alu 0 313 1 2113 114 10 3 chrX 39471220 39471509 -123128421 - AluSc SINE Alu -18 291 1 1141 251 111 23 chrX 39471568 39472011 -123127919 + HsTC2a DNA Tc2 100 581 -163 846 156 0 0 chrX 39472044 39472172 -123127758 - FLAM_C SINE Alu -4 129 2 1917 81 0 0 chrX 39472304 39472539 -123127391 + AluSc SINE Alu 56 290 -19 268 250 73 10 chrX 39472594 39472690 -123127240 - L1MEd LINE L1 -4875 1244 1143 2484 127 37 47 chrX 39472733 39473245 -123126685 - L1MA7 LINE L1 -102 6189 5683 1590 140 71 37 chrX 39473257 39473579 -123126351 - LTR10A LTR ERV1 -61 548 216 503 171 9 0 chrX 39473683 39473788 -123126142 - L1MA7 LINE L1 -605 5686 5581 321 244 140 55 chrX 39473879 39474043 -123125887 - L1MEd LINE L1 -5903 216 39 1744 111 32 25 chrX 39474124 39474431 -123125499 - AluSx SINE Alu 0 309 1 539 226 22 115 chrX 39474566 39474714 -123125216 - MIR SINE MIR -29 233 109 1649 185 13 20 chrX 39474714 39475038 -123124892 - AluJo SINE Alu 0 322 1 539 226 22 115 chrX 39475038 39475113 -123124817 - MIR SINE MIR -153 109 29 216 262 0 0 chrX 39475099 39475141 -123124789 + MIR SINE MIR 47 88 -174 * 182 281 18 18 chrX 39475500 39475557 -123124373 - L2 LINE L2 -94 3219 3163 3385 134 89 48 chrX 39475580 39476334 -123123596 - LTR1 LTR ERV1 0 785 1 244 279 73 110 chrX 39476708 39477063 -123122867 - L2 LINE L2 -570 2744 2403 201 154 0 0 chrX 39477231 39477270 -123122660 + T-rich Low_complexity Low_complexity 2 40 0 477 151 35 12 chrX 39477578 39477663 -123122267 - Tigger7 DNA MER2_type -9 2578 2492 225 114 0 0 chrX 39477663 39477698 -123122232 - MER4E LTR ERV1 0 779 745 893 102 110 0 chrX 39477699 39477826 -123122104 + AluSq/x SINE Alu 1 141 -172 1615 166 195 46 chrX 39477843 39478320 -123121610 - LTR10A LTR ERV1 -61 548 1 11344 113 48 47 chrX 39478347 39482528 -123117402 - Harlequin LTR ERV1 -26 7759 704 8550 202 23 13 chrX 39482662 39484468 -123115462 + HERVI LTR ERV1 606 2429 -5356 219 236 55 0 chrX 39484544 39484599 -123115331 + GA-rich Low_complexity Low_complexity 6 63 0 494 234 68 85 chrX 39484735 39485030 -123114900 - LTR10A-int LTR ERV1 -6359 290 1 1649 141 89 35 chrX 39485039 39485386 -123114544 - LTR10A LTR ERV1 -61 548 183 269 182 55 0 chrX 39485433 39485488 -123114442 - LTR10A LTR ERV1 -551 58 1 1125 126 0 0 chrX 39485488 39485639 -123114291 + AluSc SINE Alu 140 290 -19 3755 99 67 35 chrX 39485639 39486297 -123113633 + HSMAR2 DNA Mariner 624 1302 0 257 258 117 80 chrX 39486323 39486486 -123113444 - L2 LINE L2 -24 3289 3121 * 373 232 104 24 chrX 39486453 39486578 -123113352 + MIR SINE MIR 5 139 -123 1715 58 0 0 chrX 39486897 39487102 -123112828 + AluY SINE Alu 107 311 0 235 291 36 64 chrX 39487308 39487418 -123112512 + L2 LINE L2 3182 3288 -25 27 0 0 0 chrX 39487475 39487502 -123112428 + AT_rich Low_complexity Low_complexity 1 27 0 3408 106 129 3 chrX 39487761 39488325 -123111605 - MER41B LTR ERV1 0 635 1 1104 269 18 0 chrX 39488367 39488650 -123111280 + LTR16C LTR ERVL 195 482 -9 952 118 92 20 chrX 39488888 39489041 -123110889 + FRAM SINE Alu 2 165 -11 26 0 0 0 chrX 39489049 39489075 -123110855 + AT_rich Low_complexity Low_complexity 1 26 0 192 305 146 0 chrX 39490368 39490450 -123109480 + MIR SINE MIR 38 131 -77 1585 167 7 14 chrX 39490455 39490780 -123109150 - AluJo SINE Alu 0 329 7 2433 73 3 7 chrX 39490896 39491199 -123108731 - AluSx SINE Alu -8 304 3 261 354 39 15 chrX 39491751 39491881 -123108049 - MIR3 SINE MIR -9 199 67 1913 143 0 40 chrX 39493789 39494111 -123105819 - AluJb SINE Alu -1 311 3 423 0 0 0 chrX 39495152 39495199 -123104731 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2256 114 0 3 chrX 39495199 39495497 -123104433 - AluSc SINE Alu -10 299 1 408 253 6 56 chrX 39497583 39497745 -123102185 - L1ME3 LINE L1 -9 6153 6000 21 0 0 0 chrX 39498479 39498500 -123101430 + AT_rich Low_complexity Low_complexity 1 21 0 387 287 32 21 chrX 39498620 39498902 -123101028 + L1M4 LINE L1 4765 5049 -1097 434 38 23 114 chrX 39499667 39499798 -123100132 - SVA Other Other -1267 119 1 2100 141 0 0 chrX 39500494 39500800 -123099130 + AluJb SINE Alu 1 306 -6 2038 133 7 3 chrX 39500981 39501275 -123098655 + AluSx SINE Alu 1 295 -17 1451 154 32 58 chrX 39501343 39501655 -123098275 + MER7A DNA MER2_type 5 306 -40 281 267 5 84 chrX 39502063 39502254 -123097676 - L1MC4a LINE L1 -1834 5974 5799 2883 154 47 21 chrX 39502557 39502793 -123097137 - L1MB3 LINE L1 -21 6162 5934 2318 109 7 0 chrX 39502793 39503096 -123096834 + AluSx SINE Alu 2 306 -6 2883 154 47 21 chrX 39503096 39503437 -123096493 - L1MB3 LINE L1 -249 5934 5570 771 318 45 14 chrX 39503447 39503954 -123095976 + L1M4 LINE L1 3639 4161 -1985 234 250 71 24 chrX 39504253 39504337 -123095593 + L1M4 LINE L1 4757 4844 -1302 309 179 42 32 chrX 39504413 39504456 -123095474 - L1MEc LINE L1 -4069 2192 2151 318 50 0 0 chrX 39504456 39504496 -123095434 + (TGG)n Simple_repeat Simple_repeat 1 40 0 309 179 42 32 chrX 39504496 39504547 -123095383 - L1MEc LINE L1 -4110 2151 2097 549 238 45 85 chrX 39504547 39505123 -123094807 - L1MEc LINE L1 -4875 1386 834 1140 150 12 0 chrX 39505161 39505334 -123094596 - AluSg/x SINE Alu -1 309 135 1908 128 10 14 chrX 39505363 39505652 -123094278 + AluSx SINE Alu 1 288 -24 314 94 0 0 chrX 39505752 39505805 -123094125 + Alu SINE Alu 248 300 0 1535 259 84 25 chrX 39505811 39506441 -123093489 - L1MEc LINE L1 -5342 728 62 263 238 0 25 chrX 39506667 39506747 -123093183 - L1M1 LINE L1 -644 5659 5582 413 267 59 12 chrX 39506978 39507184 -123092746 - L1M4 LINE L1 -1018 5128 4915 211 309 83 0 chrX 39507480 39507564 -123092366 + L2 LINE L2 3182 3272 0 2387 85 3 3 chrX 39507683 39507988 -123091942 + AluSp SINE Alu 2 306 -7 28 29 0 0 chrX 39508518 39508553 -123091377 + AT_rich Low_complexity Low_complexity 1 35 0 2251 101 0 0 chrX 39508636 39508932 -123090998 - AluSg SINE Alu -14 296 1 1588 161 33 27 chrX 39510320 39510619 -123089311 - AluJo SINE Alu -11 301 1 2269 119 0 0 chrX 39510776 39511078 -123088852 + AluSc SINE Alu 1 302 -7 280 333 36 62 chrX 39512314 39512451 -123087479 + MIR3 SINE MIR 21 153 -55 938 180 26 66 chrX 39512451 39512679 -123087251 + MER20 DNA MER1_type 1 219 0 280 333 36 62 chrX 39512679 39512733 -123087197 + MIR3 SINE MIR 153 207 -1 206 160 0 20 chrX 39512885 39512935 -123086995 + (TTTAA)n Simple_repeat Simple_repeat 1 49 0 327 259 175 56 chrX 39514139 39514282 -123085648 - MIR3 SINE MIR -2 206 47 254 370 29 17 chrX 39514761 39514934 -123084996 + L2 LINE L2 2216 2390 -924 238 266 51 38 chrX 39515839 39515918 -123084012 + L2 LINE L2 3184 3263 -50 23 78 0 0 chrX 39516045 39516096 -123083834 + AT_rich Low_complexity Low_complexity 1 51 0 2201 130 0 0 chrX 39519108 39519416 -123080514 - AluSx SINE Alu -4 308 1 518 277 113 4 chrX 39519718 39520026 -123079904 - L1MC4a LINE L1 -338 5817 5616 236 288 53 53 chrX 39522179 39522311 -123077619 - L1ME LINE L1 -420 5701 5570 1495 250 244 69 chrX 39522488 39523600 -123076330 - L2 LINE L2 0 3313 1869 793 204 129 5 chrX 39523600 39523786 -123076144 + MER58C DNA MER1_type 3 211 -4 1495 250 244 69 chrX 39523786 39524159 -123075771 - L2 LINE L2 -1444 1869 1562 2311 98 3 0 chrX 39525270 39525577 -123074353 - AluSx SINE Alu -4 308 1 27 0 0 0 chrX 39526178 39526205 -123073725 + AT_rich Low_complexity Low_complexity 1 27 0 786 182 7 14 chrX 39526209 39526357 -123073573 - AluJo SINE Alu -30 282 136 482 169 34 0 chrX 39526374 39526492 -123073438 + CT-rich Low_complexity Low_complexity 1 122 0 835 155 0 0 chrX 39526492 39526621 -123073309 - AluJo SINE Alu -173 129 1 24 0 0 0 chrX 39529165 39529189 -123070741 + AT_rich Low_complexity Low_complexity 1 24 0 210 37 0 0 chrX 39529357 39529384 -123070546 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2127 102 10 19 chrX 39529387 39529700 -123070230 - AluSp SINE Alu -3 310 1 21 0 0 0 chrX 39529818 39529839 -123070091 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chrX 39530455 39530492 -123069438 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chrX 39530492 39530517 -123069413 + (TA)n Simple_repeat Simple_repeat 2 26 0 6861 54 2 2 chrX 39530517 39531895 -123068035 - L1PA6 LINE L1 -19 6135 4759 21 82 0 0 chrX 39533097 39533146 -123066784 + AT_rich Low_complexity Low_complexity 1 49 0 2321 108 20 3 chrX 39535405 39535756 -123064174 - L1MB2 LINE L1 -17 6154 5798 279 164 0 0 chrX 39536208 39536269 -123063661 + T-rich Low_complexity Low_complexity 1 61 0 495 48 0 0 chrX 39537117 39537179 -123062751 + (TATG)n Simple_repeat Simple_repeat 4 65 0 2223 88 0 7 chrX 39537182 39537466 -123062464 - AluSx SINE Alu -26 286 5 671 167 6 8 chrX 39537588 39537762 -123062168 - MER20 DNA MER1_type 0 219 1 2295 97 3 0 chrX 39538556 39538856 -123061074 - AluSp SINE Alu -12 301 1 2296 90 3 3 chrX 39539393 39539703 -123060227 - AluY SINE Alu -1 310 1 1782 144 21 7 chrX 39539781 39540065 -123059865 + AluJb SINE Alu 1 288 -24 21 0 0 31 chrX 39540567 39540583 -123059347 + AT_rich Low_complexity Low_complexity 1 16 -15 791 129 0 38 chrX 39540583 39540715 -123059215 - FLAM_C SINE Alu -6 127 1 21 0 0 31 chrX 39540715 39540730 -123059200 + AT_rich Low_complexity Low_complexity 16 31 0 21 0 0 0 chrX 39540790 39540811 -123059119 + AT_rich Low_complexity Low_complexity 1 21 0 332 299 23 0 chrX 39541776 39541863 -123058067 + MIR SINE MIR 56 144 -64 320 267 62 51 chrX 39542201 39542243 -123057687 - MER5B DNA MER1_type 0 178 138 1289 162 151 19 chrX 39542243 39542508 -123057422 - AluJo SINE Alu 0 302 3 320 267 62 51 chrX 39542508 39542641 -123057289 - MER5B DNA MER1_type -40 138 1 286 218 0 0 chrX 39542908 39542963 -123056967 + Tigger5 DNA MER2_type 1 55 -2268 566 112 0 22 chrX 39542973 39543062 -123056868 + Tigger5 DNA MER2_type 2237 2323 0 534 240 135 31 chrX 39543065 39543257 -123056673 - MIR SINE MIR -49 213 2 326 336 36 15 chrX 39545471 39545608 -123054322 - MIR3 SINE MIR -9 199 60 404 247 2 2 chrX 39545608 39545722 -123054208 - L1ME2 LINE L1 -6 6160 6046 314 286 130 13 chrX 39548506 39548660 -123051270 - MLT1L LTR MaLR 0 615 444 295 327 75 0 chrX 39548780 39548887 -123051043 - MLT1L LTR MaLR -359 256 142 224 340 109 41 chrX 39549229 39549376 -123050554 + MIR SINE MIR 31 187 -75 6471 73 14 8 chrX 39549409 39550520 -123049410 - L1PB1 LINE L1 -3 6148 5029 2243 115 0 0 chrX 39550926 39551221 -123048709 - AluSx SINE Alu -17 295 1 2179 89 10 20 chrX 39552304 39552608 -123047322 + AluSq SINE Alu 1 301 -12 592 143 0 62 chrX 39552778 39552890 -123047040 + AluSq/x SINE Alu 1 105 -207 686 176 0 0 chrX 39552952 39553060 -123046870 + AluSq/x SINE Alu 1 108 -205 313 75 15 60 chrX 39553060 39553127 -123046803 + (CA)n Simple_repeat Simple_repeat 2 65 0 2206 79 3 63 chrX 39553555 39553871 -123046059 - AluSq SINE Alu -16 297 1 1982 118 7 0 chrX 39554911 39555191 -123044739 + AluSq SINE Alu 1 282 -31 1127 134 12 0 chrX 39555212 39555383 -123044547 + AluSg/x SINE Alu 123 295 -15 244 221 103 0 chrX 39555583 39555651 -123044279 - MER5C DNA MER1_type -27 297 223 30 27 0 0 chrX 39556437 39556474 -123043456 + AT_rich Low_complexity Low_complexity 1 37 0 1767 151 54 0 chrX 39556474 39556753 -123043177 - AluSx SINE Alu -18 294 1 202 143 24 0 chrX 39558281 39558323 -123041607 + T-rich Low_complexity Low_complexity 2 44 0 1252 100 6 0 chrX 39558349 39558509 -123041421 - AluSq SINE Alu -152 161 1 1922 147 17 0 chrX 39559311 39559611 -123040319 - AluSx SINE Alu -7 305 1 2377 69 0 0 chrX 39561444 39561754 -123038176 - AluY SINE Alu 0 313 4 695 188 0 7 chrX 39561865 39562003 -123037927 - FRAM SINE Alu -1 175 39 25 0 0 0 chrX 39562981 39563006 -123036924 + AT_rich Low_complexity Low_complexity 1 25 0 2185 118 0 3 chrX 39563698 39563995 -123035935 + AluSx SINE Alu 1 296 -16 1415 39 0 22 chrX 39564355 39564537 -123035393 + L1PA8 LINE L1 5991 6168 -4 201 333 0 0 chrX 39564838 39564889 -123035041 - MER5B DNA MER1_type -2 176 126 328 298 112 12 chrX 39565068 39565229 -123034701 - L1MCa LINE L1 -4751 1675 1499 6198 60 13 34 chrX 39565270 39566126 -123033804 - SVA Other Other 0 1386 549 217 180 40 0 chrX 39566447 39566497 -123033433 + GA-rich Low_complexity Low_complexity 4 55 0 266 307 124 22 chrX 39566856 39567081 -123032849 + MARNA DNA Mariner 173 420 -166 214 305 0 0 chrX 39567204 39567263 -123032667 - MIR SINE MIR -62 146 88 43 20 0 0 chrX 39568104 39568154 -123031776 + AT_rich Low_complexity Low_complexity 1 50 0 18854 181 24 11 chrX 39768340 39773712 -122826218 - L1 LINE L1 -2073 5492 41 1099 174 26 17 chrX 39773717 39773947 -122825983 + MSTB1 LTR MaLR 201 432 0 831 285 75 8 chrX 39774012 39774388 -122825542 - L1MC4 LINE L1 -372 7670 7270 324 313 133 33 chrX 39774806 39775017 -122824913 + MIR SINE MIR 26 257 -5 490 256 112 11 chrX 39775353 39775567 -122824363 + MIR SINE MIR 26 262 0 310 298 28 21 chrX 39776078 39776219 -122823711 + L1ME4a LINE L1 5954 6095 -26 526 232 28 66 chrX 39776490 39776671 -122823259 + MER96 DNA MER1_type 2 175 0 2004 121 170 16 chrX 39776848 39777219 -122822711 + MSTA LTR MaLR 1 428 0 2239 126 0 0 chrX 39777781 39778083 -122821847 - AluSq SINE Alu -11 302 1 656 179 150 8 chrX 39778155 39778608 -122821322 + MLT1E1 LTR MaLR 1 590 -64 1618 213 35 32 chrX 39778626 39779045 -122820885 + MLT1C LTR MaLR 6 428 -39 2107 149 58 31 chrX 39779045 39779462 -122820468 - MSTA LTR MaLR 0 428 1 1618 213 35 32 chrX 39779462 39779503 -122820427 + MLT1C LTR MaLR 428 467 0 499 236 61 0 chrX 39779534 39779682 -122820248 + MLT1J2 LTR MaLR 9 165 -285 2755 195 12 48 chrX 39779687 39779952 -122819978 + L1MA7 LINE L1 4567 4840 -1306 1875 168 119 13 chrX 39779952 39780339 -122819591 + MSTA LTR MaLR 1 428 0 9385 129 22 36 chrX 39780341 39781941 -122817989 + MSTA-int LTR MaLR 3 1580 0 1977 147 128 8 chrX 39781941 39782323 -122817607 + MSTA LTR MaLR 1 428 0 2755 195 12 48 chrX 39782323 39782788 -122817142 + L1MA7 LINE L1 4839 5275 -871 20879 162 16 15 chrX 39782788 39790476 -122809454 + L1MA3 LINE L1 22 7721 -3 1832 157 31 8 chrX 39790511 39791357 -122808573 + L1MA7 LINE L1 5282 6289 -2 498 274 40 8 chrX 39791435 39791612 -122808318 + MLT1J2 LTR MaLR 238 418 -32 5760 98 39 2 chrX 39791938 39792830 -122807100 - L1MA4A LINE L1 -27 6276 5352 2182 179 47 2 chrX 39794341 39794398 -122805532 - L1MA4A LINE L1 -781 5365 5312 408 20 0 0 chrX 39794398 39794447 -122805483 + (TG)n Simple_repeat Simple_repeat 2 50 0 2182 179 47 2 chrX 39794447 39794876 -122805054 - L1MA4A LINE L1 -834 5312 4857 687 190 0 0 chrX 39795198 39795314 -122804616 + FLAM_A SINE Alu 20 135 -7 208 234 0 16 chrX 39795558 39795622 -122804308 + (CAAA)n Simple_repeat Simple_repeat 1 63 0 199 293 73 65 chrX 39795810 39795908 -122804022 - MER5A DNA MER1_type -28 161 60 767 205 94 0 chrX 39795908 39796079 -122803851 + MER5A DNA MER1_type 1 187 -2 199 293 73 65 chrX 39796079 39796103 -122803827 - MER5A DNA MER1_type -129 60 38 266 250 0 0 chrX 39797194 39797250 -122802680 - Zaphod DNA AcHobo 0 4031 3976 232 211 19 0 chrX 39797268 39797320 -122802610 - MER115 DNA AcHobo -253 440 388 627 339 28 0 chrX 39797393 39797611 -122802319 - MER115 DNA AcHobo -417 276 53 465 299 0 6 chrX 39798068 39798232 -122801698 - MER103 DNA DNA 0 166 4 361 295 23 54 chrX 39799192 39799321 -122800609 + LTR16C LTR ERVL 85 209 -282 504 149 30 45 chrX 39799377 39799511 -122800419 - L1MA7 LINE L1 -3 6288 6157 13673 188 40 19 chrX 39799511 39802583 -122797347 - L1MA7 LINE L1 -240 7470 4464 4228 120 9 14 chrX 39802583 39803239 -122796691 - L1PA15 LINE L1 -1 6164 5512 13673 188 40 19 chrX 39803239 39803546 -122796384 - L1MA7 LINE L1 -3246 4464 4165 2004 127 3 10 chrX 39803546 39803837 -122796093 - AluSq SINE Alu -22 291 3 13673 188 40 19 chrX 39803837 39804994 -122794936 - L1MA7 LINE L1 -3545 4165 2816 627 106 8 98 chrX 39804998 39805121 -122794809 - MSTB LTR MaLR -2 426 315 * 872 144 14 7 chrX 39805119 39805265 -122794665 - MSTB LTR MaLR -279 147 1 9475 164 11 11 chrX 39805265 39806916 -122793014 - MSTB-int LTR MaLR 0 1651 1 2443 165 16 12 chrX 39806916 39807340 -122792590 - MSTB LTR MaLR 0 426 1 881 229 13 20 chrX 39807340 39807743 -122792187 - L1M2 LINE L1 -4424 1927 1526 * 2353 183 8 6 chrX 39807741 39808259 -122791671 - L1 LINE L1 -1409 4737 4219 * 3507 227 37 41 chrX 39808258 39809214 -122790716 - L1M2 LINE L1 -4742 1539 588 2825 251 47 1 chrX 39809312 39810012 -122789918 - L1M2 LINE L1 -5541 740 9 1891 69 0 9 chrX 39810099 39810330 -122789600 + AluY SINE Alu 1 229 -82 289 66 33 33 chrX 39810331 39810392 -122789538 + (CAAAAA)n Simple_repeat Simple_repeat 2 62 0 2257 121 3 0 chrX 39810668 39810966 -122788964 - AluSx SINE Alu -12 300 2 1043 267 74 56 chrX 39811252 39811550 -122788380 + MLT1E LTR MaLR 1 351 -242 1422 203 25 7 chrX 39811550 39811852 -122788078 + AluJo SINE Alu 1 307 0 1043 267 74 56 chrX 39811852 39812041 -122787889 + MLT1E LTR MaLR 351 535 -58 31 0 0 0 chrX 39812435 39812466 -122787464 + AT_rich Low_complexity Low_complexity 1 31 0 374 278 113 0 chrX 39812973 39813106 -122786824 + Charlie7 DNA MER1_type 35 182 -2430 2373 119 57 28 chrX 39813132 39813569 -122786361 - LTR7 LTR ERV1 0 450 1 1885 126 47 9 chrX 39813571 39813889 -122786041 + MER4D LTR ERV1 5 334 -569 5853 105 6 1 chrX 39814239 39814593 -122785337 - L1PA11 LINE L1 0 6174 5823 186 43 0 0 chrX 39814593 39814616 -122785314 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5853 105 6 1 chrX 39814616 39815139 -122784791 - L1PA11 LINE L1 -351 5823 5293 25 31 0 0 chrX 39815139 39815171 -122784759 + AT_rich Low_complexity Low_complexity 1 32 0 305 185 0 0 chrX 39815442 39815507 -122784423 - L1PA11 LINE L1 0 6174 6110 743 103 29 22 chrX 39815514 39815650 -122784280 - L1P LINE L1 -784 5362 5226 2331 150 0 0 chrX 39815650 39816049 -122783881 + L1P LINE L1 4834 5232 -914 6153 227 53 6 chrX 39817263 39819331 -122780599 + L1PA12 LINE L1 2777 5013 -2571 1792 98 0 45 chrX 39819331 39819577 -122780353 + AluSc SINE Alu 1 235 -74 742 134 16 0 chrX 39819577 39819704 -122780226 + L1PA15 LINE L1 6032 6160 -5 721 246 19 0 chrX 39819712 39819923 -122780007 - L1MEc LINE L1 -3599 2530 2316 23 78 0 0 chrX 39819943 39819994 -122779936 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chrX 39820047 39820083 -122779847 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chrX 39820185 39820209 -122779721 + AT_rich Low_complexity Low_complexity 1 24 0 463 256 33 0 chrX 39820238 39820359 -122779571 + MER103 DNA DNA 26 150 -16 2544 52 3 3 chrX 39821306 39821616 -122778314 + AluY SINE Alu 1 310 -1 519 252 42 0 chrX 39822089 39822208 -122777722 + MER5C DNA MER1_type 1 124 -200 354 156 10 73 chrX 39822236 39822332 -122777598 + MER5C DNA MER1_type 233 322 -2 1520 156 8 0 chrX 39822380 39822624 -122777306 + L1PB3 LINE L1 5908 6153 -1 273 208 8 64 chrX 39823068 39823193 -122776737 - L1MEc LINE L1 -4913 1397 1280 405 317 19 29 chrX 39823325 39823533 -122776397 - L1MEc LINE L1 -5206 1104 899 1030 159 18 12 chrX 39823559 39823729 -122776201 - AluJo SINE Alu -22 290 120 6699 124 14 27 chrX 39823731 39825431 -122774499 - L1MA1 LINE L1 -7 7714 6037 9768 164 14 1 chrX 39825490 39828335 -122771595 - L1MA1 LINE L1 -1916 5649 2768 239 354 10 56 chrX 39828423 39828618 -122771312 - L1MEc LINE L1 -5372 747 562 443 191 20 34 chrX 39828634 39828781 -122771149 - L1MA7 LINE L1 -7 6284 6140 699 128 23 76 chrX 39828828 39829000 -122770930 - L1M1 LINE L1 -4280 3285 3123 3109 195 43 8 chrX 39829043 39830586 -122769344 - L1PA8 LINE L1 -14 6158 4505 15529 182 34 7 chrX 39830588 39833599 -122766331 - L1M1 LINE L1 -4453 3112 20 225 0 0 0 chrX 39833879 39833904 -122766026 + (TG)n Simple_repeat Simple_repeat 2 26 0 279 222 0 0 chrX 39833937 39834000 -122765930 - MLT1I LTR MaLR -39 370 308 5651 116 14 10 chrX 39834016 39834029 -122765901 + L1PA16 LINE L1 4949 4960 -1206 2323 102 64 3 chrX 39834029 39834372 -122765558 + THE1B LTR MaLR 1 364 0 5651 116 14 10 chrX 39834372 39835568 -122764362 + L1PA16 LINE L1 4960 6163 -3 309 295 33 25 chrX 39835735 39835857 -122764073 - MLT1I LTR MaLR -285 124 2 680 306 121 3 chrX 39835858 39836221 -122763709 - L1MEc LINE L1 -5594 525 120 411 21 0 0 chrX 39836336 39836384 -122763546 + (CA)n Simple_repeat Simple_repeat 1 48 0 1530 222 0 13 chrX 39836504 39836819 -122763111 + MER74B LTR ERVL 62 372 -250 1984 72 25 4 chrX 39836832 39837108 -122762822 + L1PB1 LINE L1 5869 6150 -1 696 352 88 30 chrX 39837664 39838439 -122761491 - L2 LINE L2 -672 2642 1823 486 291 13 6 chrX 39838775 39838933 -122760997 + MLT1I LTR MaLR 1 159 -250 653 241 51 0 chrX 39838976 39839134 -122760796 + MER58A DNA MER1_type 9 174 -50 553 211 16 53 chrX 39839435 39839548 -122760382 + LTR37B LTR ERV1 7 112 -356 948 165 74 0 chrX 39839548 39839724 -122760206 - MER5A DNA MER1_type 0 189 1 553 211 16 53 chrX 39839724 39839800 -122760130 + LTR37B LTR ERV1 112 189 -279 520 179 34 102 chrX 39839887 39839980 -122759950 + LTR37B LTR ERV1 250 348 -120 2188 99 0 3 chrX 39839980 39840262 -122759668 - AluSq SINE Alu -12 301 21 520 179 34 102 chrX 39840262 39840403 -122759527 + LTR37B LTR ERV1 348 468 0 2016 165 21 16 chrX 39841967 39842392 -122757538 - L1MD1 LINE L1 0 6242 5816 6910 58 7 0 chrX 39842399 39843717 -122756213 - L1PA6 LINE L1 0 6154 4829 2303 75 3 0 chrX 39843717 39843999 -122755931 - AluSg SINE Alu -14 296 14 17626 143 34 2 chrX 39843999 39846940 -122752990 - L1M1 LINE L1 -4519 3046 12 270 229 14 14 chrX 39846940 39847010 -122752920 - L1MDb LINE L1 -4540 1866 1797 3447 212 54 42 chrX 39847010 39848386 -122751544 - L1MDb LINE L1 -4549 1857 467 1345 268 66 77 chrX 39848389 39849023 -122750907 - L1MDb LINE L1 -5776 633 7 1857 207 32 36 chrX 39849413 39849882 -122750048 + MLT1C LTR MaLR 1 467 0 478 266 28 21 chrX 39849882 39850025 -122749905 - MIR SINE MIR -103 159 16 195 208 38 57 chrX 39850731 39850784 -122749146 - L2 LINE L2 -9 3304 3253 21 0 0 0 chrX 39852899 39852920 -122747010 + AT_rich Low_complexity Low_complexity 1 21 0 242 123 18 0 chrX 39852978 39853035 -122746895 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1025 154 21 113 chrX 39853040 39853084 -122746846 - MER20 DNA MER1_type 0 219 173 2371 92 10 0 chrX 39853084 39853389 -122746541 - AluSx SINE Alu -4 308 1 1025 154 21 113 chrX 39853389 39853584 -122746346 - MER20 DNA MER1_type -46 173 2 353 156 0 0 chrX 39853609 39853673 -122746257 - MLT1H LTR MaLR -3 546 483 725 262 27 23 chrX 39853793 39854014 -122745916 - MLT1H LTR MaLR -249 300 79 2349 67 0 7 chrX 39854093 39854391 -122745539 + AluY SINE Alu 1 296 -15 4136 131 8 22 chrX 39854453 39855163 -122744767 - L1MA6 LINE L1 0 6300 5601 3291 125 10 0 chrX 39855163 39855653 -122744277 - L1PA15 LINE L1 -5 6160 5661 2459 86 17 1 chrX 39855659 39856108 -122743822 + L1P4 LINE L1 5159 5615 -550 2841 260 19 32 chrX 39856136 39856958 -122742972 - L1M3c LINE L1 -5329 812 1 792 199 61 51 chrX 39856996 39857192 -122742738 - MIR SINE MIR -64 198 1 24 0 0 0 chrX 39857974 39857998 -122741932 + AT_rich Low_complexity Low_complexity 1 24 0 486 336 101 34 chrX 39858415 39858853 -122741077 - L2 LINE L2 -2 3270 2804 1558 265 65 0 chrX 39858967 39859379 -122740551 + MER45C DNA AcHobo 1 439 -514 1359 291 32 32 chrX 39859365 39859832 -122740098 + MER45C DNA AcHobo 298 764 -189 * 1469 175 35 6 chrX 39859941 39860255 -122739675 + MER45B DNA AcHobo 718 1040 0 701 250 60 6 chrX 39860351 39860519 -122739411 - MER5A DNA MER1_type 0 189 13 1750 130 0 0 chrX 39860875 39861160 -122738770 + L1P LINE L1 4181 4465 -1681 2248 96 0 3 chrX 39861161 39861452 -122738478 + AluSx SINE Alu 9 298 -14 23 0 0 0 chrX 39861539 39861562 -122738368 + AT_rich Low_complexity Low_complexity 1 23 0 548 340 158 23 chrX 39861759 39862277 -122737653 - L3 LINE CR1 -374 1203 616 204 347 0 14 chrX 39862598 39862670 -122737260 + L2 LINE L2 2966 3036 -236 452 293 35 0 chrX 39862821 39862937 -122736993 + L2 LINE L2 3148 3267 -5 28 29 0 0 chrX 39863549 39863584 -122736346 + AT_rich Low_complexity Low_complexity 1 35 0 288 329 0 0 chrX 39864331 39864407 -122735523 + MER5B DNA MER1_type 3 78 -100 344 102 0 17 chrX 39864515 39864574 -122735356 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 254 268 0 42 chrX 39864574 39864645 -122735285 + L2 LINE L2 3203 3270 -2 716 157 37 0 chrX 39864741 39864875 -122735055 - Charlie1 DNA MER1_type 0 2761 2623 * 1123 204 35 0 chrX 39864862 39865093 -122734837 - Charlie1 DNA MER1_type -2522 239 1 21 0 0 0 chrX 39865376 39865397 -122734533 + AT_rich Low_complexity Low_complexity 1 21 0 286 250 228 0 chrX 39865521 39865613 -122734317 - MER5A DNA MER1_type 0 189 77 192 158 0 0 chrX 39866607 39866645 -122733285 + G-rich Low_complexity Low_complexity 1 38 0 2260 117 53 11 chrX 39867116 39867476 -122732454 + THE1C LTR MaLR 1 375 0 2956 118 24 9 chrX 39867476 39868352 -122731578 + THE1C-int LTR MaLR 1 928 -652 994 324 72 30 chrX 39868762 39869262 -122730668 + LTR33 LTR ERVL 1 521 0 14003 213 29 12 chrX 39869455 39874072 -122725858 - L1PA16 LINE L1 -2 6164 1630 6115 98 8 1 chrX 39874072 39875234 -122724696 + L1PB3 LINE L1 4983 6149 -5 5927 195 72 31 chrX 39875249 39875659 -122724271 - L1ME LINE L1 -487 5748 5356 306 0 0 0 chrX 39875659 39875693 -122724237 + (TG)n Simple_repeat Simple_repeat 2 35 0 5927 195 72 31 chrX 39875693 39877316 -122722614 - L1ME LINE L1 -879 5356 3646 6091 106 0 4 chrX 39877325 39878587 -122721343 - L1PB1 LINE L1 0 6867 5607 2044 65 0 0 chrX 39878587 39878849 -122721081 + L1PA6 LINE L1 5893 6154 0 13124 188 66 44 chrX 39878868 39884356 -122715574 - L1PB1 LINE L1 -1241 5621 6 6378 222 73 79 chrX 39884503 39885767 -122714163 - L1MEc LINE L1 -2576 3639 2369 4409 134 12 8 chrX 39885767 39886497 -122713433 - L1PB4 LINE L1 -7 6149 5417 6378 222 73 79 chrX 39886497 39888430 -122711500 - L1MEc LINE L1 -3846 2369 425 754 141 0 0 chrX 39888430 39888565 -122711365 - L1MA8 LINE L1 -11 6280 6146 6378 222 73 79 chrX 39888565 39888897 -122711033 - L1MEc LINE L1 -5790 425 165 2585 163 38 65 chrX 39888897 39889424 -122710506 + MLT2B2 LTR ERVL 1 513 -2 6378 222 73 79 chrX 39889424 39889556 -122710374 - L1MEc LINE L1 -6050 165 34 207 0 0 0 chrX 39889565 39889588 -122710342 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 492 275 119 29 chrX 39890842 39891086 -122708844 - LTR33 LTR ERVL -211 310 45 21 57 0 0 chrX 39891607 39891642 -122708288 + AT_rich Low_complexity Low_complexity 1 35 0 267 288 0 0 chrX 39891875 39891934 -122707996 - L2 LINE L2 -7 3306 3248 2496 250 109 27 chrX 39893068 39894242 -122705688 + L1ME3A LINE L1 4885 6162 -8 435 333 102 17 chrX 39894263 39894557 -122705373 - L2 LINE L2 -609 2705 2387 4883 172 40 18 chrX 39894571 39894856 -122705074 - L1MB7 LINE L1 0 6682 6405 3747 114 15 0 chrX 39894856 39895375 -122704555 - MER1A DNA MER1_type 0 527 1 4883 172 40 18 chrX 39895375 39896321 -122703609 - L1MB7 LINE L1 -277 6405 5410 4464 234 28 24 chrX 39896317 39897084 -122702846 - L1MB7 LINE L1 -2317 4327 3565 * 2272 119 0 0 chrX 39897084 39897394 -122702536 - AluSx SINE Alu -2 310 1 4464 234 28 24 chrX 39897394 39897782 -122702148 - L1MB7 LINE L1 -3079 3565 3180 2082 176 14 0 chrX 39897782 39898139 -122701791 + MLT1A1 LTR MaLR 4 365 0 8785 192 20 44 chrX 39898139 39899917 -122700013 + MLT1A1-int LTR MaLR 1 1735 0 2000 177 14 22 chrX 39899917 39900285 -122699645 + MLT1A1 LTR MaLR 1 365 0 4464 234 28 24 chrX 39900285 39900438 -122699492 - L1MB7 LINE L1 -3463 3181 3010 516 178 0 4 chrX 39900439 39900658 -122699272 + AluSx SINE Alu 1 298 -12 641 188 7 0 chrX 39900658 39900796 -122699134 - L1MB7 LINE L1 -3624 3020 2882 * 5962 121 9 4 chrX 39900794 39901726 -122698204 + L1MA5 LINE L1 5362 6297 -3 790 265 40 0 chrX 39901926 39902212 -122697718 - L1MB7 LINE L1 -3750 2894 2598 1871 216 57 7 chrX 39902254 39902760 -122697170 - L1MB7 LINE L1 -5216 1330 650 522 212 0 109 chrX 39902758 39902923 -122697007 - L1MB7 LINE L1 -6243 299 153 * 5884 79 11 16 chrX 39902941 39903420 -122696510 - L1MA2 LINE L1 0 7723 7250 2444 97 0 0 chrX 39903420 39903731 -122696199 - AluSx SINE Alu -1 311 1 5884 79 11 16 chrX 39903731 39904109 -122695821 - L1MA2 LINE L1 -473 7250 6871 2250 107 3 0 chrX 39904111 39904410 -122695520 - THE1B LTR MaLR 0 364 65 2606 107 3 8 chrX 39904452 39904818 -122695112 - THE1B LTR MaLR 0 364 1 13952 155 109 7 chrX 39904818 39910040 -122689890 - L1MA2 LINE L1 -743 6822 1078 354 119 373 104 chrX 39910063 39910197 -122689733 - L1MA2 LINE L1 -7300 265 96 6714 72 6 1 chrX 39910289 39911747 -122688183 - L1PA13 LINE L1 -6 6157 4696 296 252 47 47 chrX 39911749 39911856 -122688074 - L1MA2 LINE L1 -7458 107 1 * 792 200 7 0 chrX 39911830 39911980 -122687950 - L1M4 LINE L1 -6376 166 16 332 318 9 0 chrX 39911996 39912103 -122687827 - L2 LINE L2 -927 2387 2280 189 0 0 0 chrX 39912232 39912253 -122687677 + (TATG)n Simple_repeat Simple_repeat 2 22 0 599 233 61 0 chrX 39912448 39912611 -122687319 + MER5B DNA MER1_type 2 174 -4 831 217 17 29 chrX 39912702 39912877 -122687053 - MER58B DNA MER1_type 0 341 169 389 279 39 10 chrX 39913036 39913140 -122686790 + L2 LINE L2 3203 3309 -4 417 205 188 18 chrX 39913304 39913416 -122686514 - L2 LINE L2 -1 3271 3141 560 314 51 0 chrX 39914697 39914872 -122685058 + LTR33 LTR ERVL 34 217 -304 8470 63 8 178 chrX 39915046 39916716 -122683214 - SVA Other Other 0 1386 2 216 0 0 0 chrX 39916718 39916742 -122683188 + (GGGAGA)n Simple_repeat Simple_repeat 6 29 0 302 344 16 39 chrX 39917982 39918110 -122681820 - L2 LINE L2 0 3272 3148 225 255 120 115 chrX 39918243 39918435 -122681495 - MIR SINE MIR -66 196 4 2618 38 0 29 chrX 39919337 39919652 -122680278 - AluY SINE Alu -5 306 1 300 341 119 28 chrX 39919811 39919987 -122679943 - MIR SINE MIR -17 245 54 433 250 52 0 chrX 39921854 39921970 -122677960 - MIR SINE MIR -28 234 113 1043 247 71 0 chrX 39922158 39922397 -122677533 + MIR SINE MIR 1 256 -6 328 249 117 20 chrX 39922519 39922692 -122677238 - MIR SINE MIR -34 228 42 391 310 31 31 chrX 39924552 39924720 -122675210 + MIR SINE MIR 16 192 -66 566 256 154 8 chrX 39924722 39924956 -122674974 - LTR16A1 LTR ERVL -2 455 188 781 305 64 20 chrX 39925305 39925695 -122674235 - MER90 LTR ERV1 -18 596 190 531 216 59 69 chrX 39927552 39927854 -122672076 + MLT1H1 LTR MaLR 152 460 -107 403 192 13 0 chrX 39927889 39927966 -122671964 + Tigger5 DNA MER2_type 1 78 -2245 379 228 0 0 chrX 39927966 39928045 -122671885 - Tigger5 DNA MER2_type -3 2320 2242 * 388 150 0 0 chrX 39928041 39928101 -122671829 + Tigger5 DNA MER2_type 2264 2323 0 324 0 0 0 chrX 39928335 39928371 -122671559 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 71 0 0 chrX 39928371 39928399 -122671531 + (GA)n Simple_repeat Simple_repeat 1 28 0 236 297 16 0 chrX 39929081 39929145 -122670785 + MIR SINE MIR 59 123 -85 215 281 16 0 chrX 39929207 39929271 -122670659 + MIR3 SINE MIR 138 202 -6 331 277 50 20 chrX 39929391 39929492 -122670438 + L2 LINE L2 3210 3313 0 1110 304 48 44 chrX 39930135 39930682 -122669248 - LTR67 LTR ERVL -3 554 6 2235 114 0 3 chrX 39930818 39931116 -122668814 - AluSg SINE Alu -13 297 1 2134 41 0 22 chrX 39931309 39931579 -122668351 - L1PA8 LINE L1 0 6172 5909 21 0 0 0 chrX 39932635 39932656 -122667274 + AT_rich Low_complexity Low_complexity 1 21 0 1308 198 146 9 chrX 39932791 39933241 -122666689 - MLT1E LTR MaLR 0 593 4 6565 172 56 19 chrX 39933718 39936936 -122662994 + L1MA1 LINE L1 2747 6295 -7 1030 159 18 12 chrX 39936938 39937108 -122662822 + AluJo SINE Alu 120 290 -22 405 317 19 29 chrX 39937134 39937342 -122662588 + L1MEc LINE L1 985 1190 -5206 273 208 8 64 chrX 39937474 39937599 -122662331 + L1MEc LINE L1 1366 1483 -4913 1520 156 8 0 chrX 39938043 39938287 -122661643 - L1PB3 LINE L1 -1 6153 5908 354 156 10 73 chrX 39938335 39938431 -122661499 - MER5C DNA MER1_type -2 322 233 519 252 42 0 chrX 39938459 39938578 -122661352 - MER5C DNA MER1_type -200 124 1 2544 52 3 3 chrX 39939051 39939361 -122660569 - AluY SINE Alu -1 310 1 463 256 33 0 chrX 39940308 39940429 -122659501 - MER103 DNA DNA -16 150 26 24 0 0 0 chrX 39940458 39940482 -122659448 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 39940584 39940620 -122659310 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chrX 39940673 39940724 -122659206 + AT_rich Low_complexity Low_complexity 1 51 0 721 246 19 0 chrX 39940744 39940955 -122658975 + L1MEc LINE L1 2402 2616 -3599 723 148 16 0 chrX 39940963 39941091 -122658839 - L1PA15 LINE L1 -4 6161 6032 1863 68 4 4 chrX 39941091 39941327 -122658603 - AluY SINE Alu -75 236 1 2825 251 47 1 chrX 39941414 39942114 -122657816 + L1M3b LINE L1 9 740 -5541 1307 263 38 73 chrX 39942212 39942718 -122657212 + L1M3b LINE L1 588 1075 -5206 184 328 0 35 chrX 39943397 39943455 -122656475 - L3 LINE CR1 -7 1570 1515 315 118 0 20 chrX 39943715 39943766 -122656164 + MER20 DNA MER1_type 170 219 0 791 274 67 80 chrX 39943848 39943903 -122656027 - L2 LINE L2 -1900 1414 1360 1012 184 39 67 chrX 39943903 39944185 -122655745 - ORSL DNA AcHobo 0 275 2 791 274 67 80 chrX 39944185 39944604 -122655326 - L2 LINE L2 -1954 1360 946 1691 217 86 9 chrX 39945196 39945625 -122654305 + LTR40b LTR ERVL 1 462 0 335 276 194 15 chrX 39946328 39946462 -122653468 + MIR SINE MIR 29 186 -76 252 105 0 0 chrX 39946464 39946502 -122653428 + tRNA-Leu-TTG tRNA tRNA 1 38 -48 237 315 14 0 chrX 39946504 39946577 -122653353 + MIR SINE MIR 173 246 -16 2321 87 0 3 chrX 39946726 39947024 -122652906 - AluSc SINE Alu -12 297 1 1461 97 0 0 chrX 39947211 39947396 -122652534 + AluSq SINE Alu 1 185 -128 1147 259 80 62 chrX 39947424 39947881 -122652049 - MLT1J LTR MaLR 0 511 43 468 0 0 0 chrX 39947881 39947933 -122651997 + (CA)n Simple_repeat Simple_repeat 1 52 0 1147 259 80 62 chrX 39947933 39947977 -122651953 - MLT1J LTR MaLR -468 43 1 292 51 0 0 chrX 39948230 39948269 -122651661 + MER74C LTR ERVL 4 42 -418 1328 215 33 22 chrX 39949304 39949733 -122650197 + MER74A LTR ERVL 9 523 -35 15799 135 42 7 chrX 39949891 39952514 -122647416 + Tigger2 DNA MER2_type 2 2716 -2 267 389 54 57 chrX 39952608 39952888 -122647042 - L2 LINE L2 0 3272 2994 252 315 0 0 chrX 39952906 39952998 -122646932 + L1ME1 LINE L1 149 240 -5965 1756 248 52 14 chrX 39953001 39953440 -122646490 + L1M4b LINE L1 1 456 -6403 334 105 18 0 chrX 39953445 39953502 -122646428 + L1M4b LINE L1 1238 1295 -5564 739 203 16 22 chrX 39953516 39953698 -122646232 + L1MA2 LINE L1 238 418 -7147 11443 170 59 20 chrX 39953709 39955545 -122644385 + L1MA2 LINE L1 1703 3465 -4258 1750 196 3 3 chrX 39955545 39955851 -122644079 + AluJb SINE Alu 1 306 -6 11443 170 59 20 chrX 39955851 39959533 -122640397 + L1MA2 LINE L1 3465 7481 -242 2024 95 20 48 chrX 39959550 39959907 -122640023 + L1MA2 LINE L1 5958 6304 0 1619 209 46 0 chrX 39962582 39962931 -122636999 - MLT1A1 LTR MaLR 0 365 1 243 316 107 8 chrX 39963036 39963280 -122636650 + L2 LINE L2 3046 3313 0 331 198 62 12 chrX 39963531 39963610 -122636320 + MLT1H LTR MaLR 138 220 -329 2110 248 47 6 chrX 39963610 39964143 -122635787 - MER76 LTR ERV 0 688 134 1834 158 41 19 chrX 39964147 39964513 -122635417 + THE1C LTR MaLR 2 375 0 488 88 12 12 chrX 39964517 39964597 -122635333 + THE1C-int LTR MaLR 5 84 -1567 2117 259 61 15 chrX 39964719 39965734 -122634196 + L1ME1 LINE L1 803 1864 -4532 270 206 32 0 chrX 39965749 39965812 -122634118 - MER58A DNA MER1_type -11 213 149 2109 174 61 15 chrX 39965814 39966223 -122633707 - MSTA LTR MaLR 0 428 1 337 162 0 15 chrX 39966223 39966291 -122633639 - MSTA-int LTR MaLR 0 1651 1585 * 533 162 6 0 chrX 39966283 39966385 -122633545 - MSTA-int LTR MaLR -186 1462 1288 5009 161 9 31 chrX 39966388 39967321 -122632609 + MST-int LTR MaLR 736 1647 -4 3916 166 9 25 chrX 39967309 39967921 -122632009 - MSTA-int LTR MaLR -908 743 144 * 2248 107 7 0 chrX 39967921 39968219 -122631711 + AluSc SINE Alu 1 300 -9 3916 166 9 25 chrX 39968219 39968361 -122631569 - MSTA-int LTR MaLR -1507 144 1 2095 182 60 24 chrX 39968361 39968774 -122631156 - MSTA LTR MaLR 0 428 1 509 274 7 59 chrX 39968779 39968869 -122631061 - MER58A DNA MER1_type -196 145 65 2195 118 0 0 chrX 39968869 39969158 -122630772 + AluSx SINE Alu 1 289 -23 509 274 7 59 chrX 39969158 39969220 -122630710 - MER58A DNA MER1_type -276 65 1 1839 223 90 14 chrX 39969221 39969903 -122630027 + L1ME1 LINE L1 1866 2549 -3666 * 3605 219 70 28 chrX 39969892 39971259 -122628671 + L1ME1 LINE L1 4238 5658 -577 3242 209 34 12 chrX 39971295 39972024 -122627906 - L1MB8 LINE L1 -6 6172 5428 1465 175 29 92 chrX 39972016 39972461 -122627469 - L1MB8 LINE L1 -2125 4021 3605 * 243 260 10 58 chrX 39972546 39972650 -122627280 - L1M4b LINE L1 -4564 2574 2476 6588 247 63 19 chrX 39972815 39975132 -122624798 - L1M4b LINE L1 -4550 2409 3 2157 242 24 17 chrX 39975133 39975708 -122624222 + L1ME1 LINE L1 5649 6227 -8 405 346 79 0 chrX 39975967 39976094 -122623836 - L2 LINE L2 0 3272 3136 1277 245 0 0 chrX 39976397 39976630 -122623300 + Tigger5 DNA MER2_type 1 233 -2090 431 169 60 12 chrX 39976624 39976707 -122623223 + Tigger5 DNA MER2_type 2236 2322 -1 * 268 298 65 16 chrX 39976800 39976924 -122623006 + LTR67 LTR ERVL 428 557 0 1137 172 0 5 chrX 39977078 39977264 -122622666 + MER5A DNA MER1_type 2 186 -3 334 364 83 20 chrX 39977277 39977579 -122622351 - L2 LINE L2 -618 2696 2376 5116 162 15 10 chrX 39977590 39978950 -122620980 - L1MB5 LINE L1 -8 6166 4801 * 9874 210 15 10 chrX 39978945 39979803 -122620127 - L1P4 LINE L1 -727 5439 4587 2025 106 64 22 chrX 39979803 39980162 -122619768 + THE1C LTR MaLR 2 375 0 9874 210 15 10 chrX 39980162 39981650 -122618280 - L1P4 LINE L1 -1579 4587 3078 627 345 110 46 chrX 39981667 39982672 -122617258 - L2 LINE L2 -1336 1978 1039 2310 95 3 0 chrX 39982672 39982968 -122616962 + AluSq SINE Alu 1 297 -16 627 345 110 46 chrX 39982968 39983030 -122616900 - L2 LINE L2 -2275 1039 982 2208 137 33 0 chrX 39983030 39983367 -122616563 + MER7A DNA MER2_type 1 346 0 627 345 110 46 chrX 39983367 39983493 -122616437 - L2 LINE L2 -2332 982 866 1764 67 14 9 chrX 39983493 39983716 -122616214 + AluY SINE Alu 79 302 -9 627 345 110 46 chrX 39983716 39984177 -122615753 - L2 LINE L2 -2448 866 215 338 340 58 6 chrX 39984197 39984353 -122615577 - MIR SINE MIR -34 228 65 799 302 24 41 chrX 39985110 39985405 -122614525 + LTR16A1 LTR ERVL 168 457 0 360 284 28 66 chrX 39985513 39985651 -122614279 + L1MC4 LINE L1 5039 5168 -978 1897 151 35 0 chrX 39985651 39985989 -122613941 + L1MA9 LINE L1 5963 6312 0 360 284 28 66 chrX 39985989 39986061 -122613869 + L1MC4 LINE L1 5168 5241 -905 329 277 104 9 chrX 39986097 39986317 -122613613 + L1MC4 LINE L1 5264 5504 -2304 1340 254 83 10 chrX 39986321 39986719 -122613211 + L1MC4 LINE L1 5442 5868 -1940 544 196 55 55 chrX 39986726 39986925 -122613005 + L1MC4 LINE L1 7392 7590 -452 4482 100 43 4 chrX 39986929 39987630 -122612300 + L1MA3 LINE L1 5578 6305 0 1385 230 39 48 chrX 39987681 39988004 -122611926 + L1MC4 LINE L1 7580 7899 -143 306 0 0 0 chrX 39988004 39988038 -122611892 + (TA)n Simple_repeat Simple_repeat 2 35 0 1385 230 39 48 chrX 39988038 39988149 -122611781 + L1MC4 LINE L1 7899 8010 -32 245 222 0 0 chrX 39989195 39989240 -122610690 - L2 LINE L2 -12 3301 3257 337 301 9 0 chrX 39989787 39989900 -122610030 - L1ME4a LINE L1 -283 5838 5725 348 251 49 137 chrX 39989996 39990303 -122609627 - L1ME4a LINE L1 -2225 5583 5304 431 221 63 0 chrX 39990706 39990801 -122609129 - L2 LINE L2 -1 3312 3212 513 176 331 0 chrX 39992242 39992378 -122607552 - MER5A DNA MER1_type 0 189 9 5350 141 28 27 chrX 39992661 39994183 -122605747 - L1MA8 LINE L1 -1 7001 5481 800 111 24 8 chrX 39994183 39994309 -122605621 - FLAM_C SINE Alu -5 128 1 5350 141 28 27 chrX 39994309 39994572 -122605358 - L1MA8 LINE L1 -1521 5481 5180 1668 178 20 17 chrX 39994572 39994864 -122605066 - AluJb SINE Alu -19 293 1 5350 141 28 27 chrX 39994864 39994984 -122604946 - L1MA8 LINE L1 -1822 5180 5062 957 178 23 46 chrX 39994958 39995177 -122604753 - L1MA8 LINE L1 -3307 3541 3328 * 931 191 9 22 chrX 39995175 39995406 -122604524 - L1MA8 LINE L1 -3756 3092 2865 * 528 70 0 0 chrX 39995407 39995478 -122604452 - MADE1 DNA Mariner -9 71 1 6746 208 125 119 chrX 39995481 39996411 -122603519 - L1MA8 LINE L1 -3992 2857 1933 2617 132 31 5 chrX 39996411 39996827 -122603103 + MSTA LTR MaLR 2 428 0 6746 208 125 119 chrX 39996827 39998736 -122601194 - L1MA8 LINE L1 -4916 1933 3 3076 171 51 3 chrX 39998737 39998837 -122601093 - L1 LINE L1 -2808 4298 4204 2186 100 23 7 chrX 39998837 39999138 -122600792 - AluSq SINE Alu -7 306 1 3076 171 51 3 chrX 39999138 39999709 -122600221 - L1 LINE L1 -2902 4204 3595 3562 260 43 35 chrX 39999727 40001841 -122598089 - L1 LINE L1 -4220 2886 7 492 241 157 63 chrX 40002679 40002870 -122597060 + MER63A DNA MER1_type 1 209 -1 609 275 81 76 chrX 40002923 40003406 -122596524 + MLT1H LTR MaLR 25 548 -1 387 261 322 4 chrX 40004027 40004257 -122595673 - L2 LINE L2 0 3313 3011 209 283 132 72 chrX 40004313 40004465 -122595465 - MIR SINE MIR -56 206 46 228 143 0 0 chrX 40005236 40005278 -122594652 + (CA)n Simple_repeat Simple_repeat 2 43 0 706 252 34 15 chrX 40005291 40005497 -122594433 - MER63A DNA MER1_type 0 210 1 612 223 57 0 chrX 40005684 40005841 -122594089 - L1MD2 LINE L1 0 6359 6194 2693 215 77 27 chrX 40005861 40007048 -122592882 - L1MC/D LINE L1 -610 6026 4771 10479 147 39 129 chrX 40007066 40008850 -122591080 - L1MA2 LINE L1 -2 7721 5777 345 82 0 0 chrX 40008850 40008899 -122591031 + (TG)n Simple_repeat Simple_repeat 2 50 0 10479 147 39 129 chrX 40008899 40009362 -122590568 - L1MA2 LINE L1 -1946 5777 5274 2175 122 0 0 chrX 40009362 40009658 -122590272 + AluSx SINE Alu 1 296 -16 10479 147 39 129 chrX 40009658 40011718 -122588212 - L1MA2 LINE L1 -2449 5274 3822 241 203 0 31 chrX 40011719 40011783 -122588147 - L1MA2 LINE L1 -3843 3722 3661 7485 181 19 21 chrX 40011785 40013146 -122586784 - L1MA2 LINE L1 -6188 1377 19 1554 170 40 7 chrX 40013147 40013423 -122586507 - AluJo SINE Alu -15 297 13 1231 206 15 83 chrX 40013436 40013835 -122586095 - L1MC/D LINE L1 -1765 4775 4404 7348 186 53 34 chrX 40013902 40015955 -122583975 - L1MDa LINE L1 -3611 2929 843 669 261 22 18 chrX 40016069 40016291 -122583639 + L1ME3A LINE L1 5729 5951 -219 201 333 39 26 chrX 40016460 40016538 -122583392 - MER5B DNA MER1_type -5 173 95 * 230 258 30 15 chrX 40016530 40016596 -122583334 + MER5A DNA MER1_type 123 189 0 236 270 44 58 chrX 40016975 40017112 -122582818 + L2 LINE L2 2553 2687 -627 1893 174 60 20 chrX 40017112 40017514 -122582416 - L1MD3 LINE L1 -4 7991 7574 1448 285 40 7 chrX 40017661 40018082 -122581848 - LTR16A LTR ERVL 0 450 16 227 393 43 0 chrX 40018109 40018249 -122581681 + L2 LINE L2 2912 3057 -215 3518 156 16 7 chrX 40018501 40019066 -122580864 - MER44D DNA MER2_type 0 605 164 536 204 0 0 chrX 40019061 40019149 -122580781 + MER44D DNA MER2_type 518 605 0 * 1018 194 0 0 chrX 40019293 40019458 -122580472 - MER44D DNA MER2_type -540 165 1 1174 242 112 9 chrX 40019599 40019938 -122579992 - MLT1A2 LTR MaLR 0 374 1 464 213 85 85 chrX 40020186 40020374 -122579556 - MER5A DNA MER1_type -1 188 1 205 189 0 0 chrX 40020556 40020593 -122579337 + (CA)n Simple_repeat Simple_repeat 2 38 0 2696 224 131 11 chrX 40020680 40021384 -122578546 - MER21B LTR ERV1 -57 806 19 422 247 0 0 chrX 40021391 40021476 -122578454 - MER21B LTR ERV1 -767 96 12 191 88 29 0 chrX 40022995 40023029 -122576901 + (TAA)n Simple_repeat Simple_repeat 1 35 0 285 29 0 0 chrX 40023080 40023114 -122576816 + (CA)n Simple_repeat Simple_repeat 1 34 0 698 197 73 132 chrX 40023805 40024176 -122575754 + MSTB1 LTR MaLR 1 349 -83 236 216 20 0 chrX 40024191 40024242 -122575688 + CT-rich Low_complexity Low_complexity 1 52 0 186 156 0 0 chrX 40024242 40024287 -122575643 + (CTCA)n Simple_repeat Simple_repeat 4 48 0 2325 96 7 0 chrX 40024396 40024697 -122575233 + AluY SINE Alu 1 303 -8 4786 20 2 0 chrX 40024781 40025335 -122574595 - L1PA2 LINE L1 0 6155 5601 214 318 75 47 chrX 40025514 40025621 -122574309 - MIR SINE MIR -69 139 30 15041 193 17 6 chrX 40025738 40025824 -122574106 - L1PA15 LINE L1 -307 6509 6425 3667 87 19 4 chrX 40025824 40026342 -122573588 - L1PA10 LINE L1 -2 6166 5641 15041 193 17 6 chrX 40026342 40030193 -122569737 - L1PA15 LINE L1 -391 6425 2534 4042 263 68 35 chrX 40030187 40031607 -122568323 - L1PA15 LINE L1 -5192 1595 128 * 4075 240 19 6 chrX 40031609 40032799 -122567131 - L1M4 LINE L1 -842 5304 4099 1030 195 50 8 chrX 40032801 40033062 -122566868 + L1 LINE L1 2665 2936 -3210 578 275 3 35 chrX 40033069 40033356 -122566574 + L1M3e LINE L1 490 767 -6263 * 4209 137 16 7 chrX 40033348 40034409 -122565521 + L1MA9 LINE L1 4578 5644 -668 375 211 40 0 chrX 40034492 40034568 -122565362 - Tigger5 DNA MER2_type -2244 79 1 3336 158 24 17 chrX 40034568 40035231 -122564699 + L1MA9 LINE L1 5645 6312 0 599 296 103 0 chrX 40035393 40035596 -122564334 + MIR SINE MIR 2 225 -37 9436 197 60 10 chrX 40035832 40035848 -122564082 - L1M4 LINE L1 -546 5638 5624 3675 96 277 0 chrX 40035848 40036495 -122563435 + LTR12 LTR ERV1 1 826 0 9436 197 60 10 chrX 40036495 40038343 -122561587 - L1M4 LINE L1 -560 5624 3581 2014 162 89 13 chrX 40038343 40038738 -122561192 + MSTA LTR MaLR 1 425 -3 9436 197 60 10 chrX 40038738 40039671 -122560259 - L1M4 LINE L1 -2603 3581 2697 207 178 67 22 chrX 40040885 40040930 -122559000 - L3 LINE CR1 -1 1576 1530 351 0 0 0 chrX 40041515 40041554 -122558376 + (CA)n Simple_repeat Simple_repeat 2 40 0 425 292 100 0 chrX 40041676 40041796 -122558134 + L2 LINE L2 3141 3272 0 350 0 44 0 chrX 40043450 40043495 -122556435 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2491 54 0 16 chrX 40044322 40044635 -122555295 + AluY SINE Alu 1 308 -3 527 339 83 26 chrX 40044926 40045305 -122554625 - L2 LINE L2 -267 3046 2634 5612 147 12 25 chrX 40045311 40046075 -122553855 - L1PA13 LINE L1 0 6163 5391 2158 65 0 4 chrX 40046075 40046352 -122553578 - L1PA6 LINE L1 -4 6150 5875 5612 147 12 25 chrX 40046352 40047334 -122552596 - L1PA13 LINE L1 -772 5391 4439 783 331 114 33 chrX 40047335 40047887 -122552043 - L2 LINE L2 -687 2627 2031 5018 113 12 46 chrX 40048068 40048874 -122551056 - LTR39 LTR ERV1 -4 779 1 180 0 0 0 chrX 40049073 40049093 -122550837 + (T)n Simple_repeat Simple_repeat 1 20 0 765 215 47 19 chrX 40049922 40050178 -122549752 - L1M4 LINE L1 -2261 3885 3623 * 2036 226 76 48 chrX 40050174 40050895 -122549035 + L1MCc LINE L1 2 1088 -5334 449 301 6 6 chrX 40050902 40051068 -122548862 + L1ME1 LINE L1 5999 6164 -2 789 244 10 10 chrX 40051080 40051285 -122548645 + L1MCc LINE L1 1075 1279 -5143 2002 261 88 10 chrX 40051310 40052235 -122547695 - L1M4 LINE L1 -2511 3635 2639 291 251 188 18 chrX 40054040 40054370 -122545560 - L1M4 LINE L1 -3546 2600 2215 510 296 197 11 chrX 40054373 40054550 -122545380 - L1M4 LINE L1 -1311 4835 4692 387 0 0 0 chrX 40054550 40054593 -122545337 + (CA)n Simple_repeat Simple_repeat 2 44 0 510 296 197 11 chrX 40054593 40054790 -122545140 - L1M4 LINE L1 -1454 4692 4391 4383 200 106 96 chrX 40054836 40054938 -122544992 - L1MD3 LINE L1 -10 7985 7885 2526 78 5 56 chrX 40054938 40055312 -122544618 + THE1A LTR MaLR 1 355 0 4383 200 106 96 chrX 40055312 40055789 -122544141 - L1MD3 LINE L1 -110 7885 7414 504 184 19 10 chrX 40055789 40055892 -122544038 - MLT1F1 LTR MaLR -442 125 22 4383 200 106 96 chrX 40055892 40056874 -122543056 - L1MD3 LINE L1 -581 7414 6302 9268 191 26 14 chrX 40056876 40059227 -122540703 + L1PA16 LINE L1 2951 5343 -823 3384 47 0 2 chrX 40059227 40059636 -122540294 + L1PA6 LINE L1 5736 6143 -11 9268 191 26 14 chrX 40059636 40060460 -122539470 + L1PA16 LINE L1 5343 6156 -10 22 0 0 0 chrX 40060460 40060482 -122539448 + AT_rich Low_complexity Low_complexity 1 22 0 2988 213 23 4 chrX 40060555 40061288 -122538642 - L1ME1 LINE L1 -18 6148 5402 1199 230 8 38 chrX 40061389 40061425 -122538505 - L1ME1 LINE L1 -788 5358 5322 2146 115 3 0 chrX 40061425 40061721 -122538209 - AluSx SINE Alu -15 297 1 1199 230 8 38 chrX 40061721 40062080 -122537850 - L1ME1 LINE L1 -824 5322 4975 665 292 113 23 chrX 40062084 40062859 -122537071 - L1ME1 LINE L1 -1819 4327 3483 322 259 185 29 chrX 40062863 40062900 -122537030 - L1ME1 LINE L1 -2696 3450 3420 1713 169 127 8 chrX 40062900 40063254 -122536676 + MSTD LTR MaLR 1 396 0 322 259 185 29 chrX 40063254 40063421 -122536509 - L1ME1 LINE L1 -2726 3420 3214 242 228 0 0 chrX 40064028 40064085 -122535845 - MER103 DNA DNA -41 125 69 24 67 0 0 chrX 40064474 40064519 -122535411 + AT_rich Low_complexity Low_complexity 1 45 0 2233 129 0 0 chrX 40065670 40065973 -122533957 + AluSx SINE Alu 1 303 -9 246 105 0 0 chrX 40065973 40066011 -122533919 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 235 309 0 12 chrX 40066063 40066147 -122533783 + MIR3 SINE MIR 124 206 -2 1870 186 16 32 chrX 40066186 40066562 -122533368 - MLT1A2 LTR MaLR 0 374 5 796 231 61 78 chrX 40066780 40067140 -122532790 - MLT1J LTR MaLR 0 511 158 1649 191 27 43 chrX 40067519 40067890 -122532040 + MLT1A1 LTR MaLR 1 365 0 349 277 0 0 chrX 40068176 40068259 -122531671 - LTR16C LTR ERVL 0 491 409 2246 94 37 0 chrX 40068324 40068623 -122531307 + AluSg SINE Alu 1 310 0 1002 217 237 84 chrX 40069437 40069842 -122530088 + MLT1D LTR MaLR 1 467 0 23 33 0 0 chrX 40070010 40070040 -122529890 + AT_rich Low_complexity Low_complexity 1 30 0 413 234 156 7 chrX 40071360 40071501 -122528429 - MIR SINE MIR -54 208 47 2319 73 17 0 chrX 40071549 40071836 -122528094 + AluY SINE Alu 1 292 -19 1846 230 81 4 chrX 40072005 40072526 -122527404 - L1ME1 LINE L1 -10 6156 5596 482 237 26 33 chrX 40072528 40072547 -122527383 - L1MA10 LINE L1 0 6334 6316 783 256 58 47 chrX 40072547 40072911 -122527019 - L1ME1 LINE L1 -5 6230 5863 3490 100 23 18 chrX 40072932 40073500 -122526430 - L1PA13 LINE L1 -8 6155 5585 14010 170 20 2 chrX 40073501 40076232 -122523698 - L1PA13 LINE L1 -1120 5026 2246 531 194 9 0 chrX 40076243 40076351 -122523579 - L1ME1 LINE L1 -393 5842 5734 1974 203 24 7 chrX 40076407 40076930 -122523000 - L1ME1 LINE L1 -474 5761 5232 1233 85 111 0 chrX 40076946 40077145 -122522785 - L1MA2 LINE L1 0 6304 6084 312 157 0 0 chrX 40077149 40077200 -122522730 - MSTA LTR MaLR 0 428 378 848 125 8 0 chrX 40077209 40077337 -122522593 + THE1B LTR MaLR 236 364 0 3152 90 0 0 chrX 40077337 40077770 -122522160 + THE1B-int LTR MaLR 1 433 -1147 * 5932 17 1 0 chrX 40077766 40078485 -122521445 + L1PA3 LINE L1 5283 6002 -153 1001 105 66 7 chrX 40078585 40078737 -122521193 + THE1B LTR MaLR 204 364 0 5076 88 0 10 chrX 40078737 40079468 -122520462 + L1PB1 LINE L1 5394 6117 -34 1189 175 53 0 chrX 40079492 40079720 -122520210 + MSTA LTR MaLR 189 428 0 2473 250 33 18 chrX 40079720 40080657 -122519273 - L1ME1 LINE L1 -2166 4049 3099 545 179 15 22 chrX 40080653 40080787 -122519143 - L1ME1 LINE L1 -4278 2118 1986 * 401 307 0 10 chrX 40082423 40082524 -122517406 + MIR SINE MIR 30 129 -133 4437 105 142 95 chrX 40082826 40084244 -122515686 - pTR5 LTR ERV1 0 1683 31 664 297 38 9 chrX 40086112 40086324 -122513606 + MIR SINE MIR 45 262 0 1769 177 34 0 chrX 40086632 40086926 -122513004 + AluJo SINE Alu 1 304 -8 491 333 88 31 chrX 40087235 40087553 -122512377 - MER102b DNA MER1_type 0 341 6 252 299 102 24 chrX 40087842 40087969 -122511961 + MIR SINE MIR 65 201 -61 200 360 40 20 chrX 40089592 40089692 -122510238 - MER5A DNA MER1_type -85 104 3 4748 171 51 24 chrX 40089710 40090004 -122509926 - Charlie1 DNA MER1_type 0 2761 2476 2253 120 0 0 chrX 40090004 40090304 -122509626 + AluSg SINE Alu 1 300 -10 4748 171 51 24 chrX 40090304 40091092 -122508838 - Charlie1 DNA MER1_type -285 2476 1650 231 36 0 0 chrX 40091092 40091120 -122508810 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 298 143 0 63 chrX 40091225 40091288 -122508642 - MLT1B LTR MaLR -331 59 1 353 148 0 0 chrX 40091503 40091564 -122508366 + L1MA7 LINE L1 6185 6245 -46 3503 240 33 17 chrX 40091574 40092446 -122507484 + L1PA15 LINE L1 1 886 -5901 4482 199 44 43 chrX 40092584 40093682 -122506248 + L1PA15 LINE L1 1103 2201 -4586 14254 205 10 24 chrX 40093689 40097244 -122502686 + L1PA15 LINE L1 2480 5983 -823 1948 156 0 7 chrX 40097244 40097546 -122502384 + AluSx SINE Alu 1 300 -12 963 143 6 56 chrX 40097554 40097715 -122502215 + AluSg/x SINE Alu 145 297 -15 5394 120 5 0 chrX 40097716 40098549 -122501381 + L1PA15 LINE L1 5973 6809 -7 1316 146 54 0 chrX 40099180 40099440 -122500490 + L1MB3 LINE L1 5690 5963 -220 1741 188 3 13 chrX 40100155 40100458 -122499472 - AluJo SINE Alu -12 300 1 275 341 11 0 chrX 40100613 40100704 -122499226 + MIR SINE MIR 21 112 -150 935 237 93 35 chrX 40101753 40102277 -122497653 - MLT1G LTR MaLR 0 555 1 838 238 31 35 chrX 40102734 40102961 -122496969 - MIR SINE MIR -3 259 34 386 303 35 14 chrX 40104029 40104171 -122495759 - L2 LINE L2 -4 3309 3165 216 339 108 38 chrX 40104321 40104637 -122495293 - L2 LINE L2 -340 2974 2637 582 293 17 11 chrX 40104638 40104819 -122495111 + MIR SINE MIR 81 262 0 27 0 0 0 chrX 40105828 40105855 -122494075 + AT_rich Low_complexity Low_complexity 1 27 0 274 197 0 16 chrX 40106022 40106083 -122493847 - L1ME3A LINE L1 -96 6074 6015 2230 97 0 0 chrX 40106098 40106397 -122493533 - AluSg1 SINE Alu -10 299 1 7525 168 5 0 chrX 40106409 40108567 -122491363 - L1PA13 LINE L1 -4 6159 3988 283 154 0 31 chrX 40108572 40108637 -122491293 - L1PA13 LINE L1 -2712 3434 3372 * 4751 176 20 7 chrX 40108627 40109529 -122490401 - MSTB-int LTR MaLR -737 914 1 1876 177 77 17 chrX 40109529 40109931 -122489999 - MSTB LTR MaLR 0 426 1 5060 130 8 0 chrX 40110137 40111578 -122488352 + L1PA13 LINE L1 4399 5847 -316 943 194 44 0 chrX 40112415 40112595 -122487335 + L1PB4 LINE L1 5961 6148 -8 511 204 0 26 chrX 40112718 40112831 -122487099 - L2 LINE L2 -1 3312 3203 6394 182 47 95 chrX 40112841 40114722 -122485208 + L1MC3 LINE L1 5988 7778 -7 485 285 96 34 chrX 40114757 40115048 -122484882 - L2 LINE L2 -177 3136 2828 227 302 123 22 chrX 40115168 40115347 -122484583 - MIR SINE MIR -29 233 37 249 33 0 0 chrX 40115684 40115714 -122484216 + (TG)n Simple_repeat Simple_repeat 1 30 0 205 182 0 0 chrX 40116877 40116910 -122483020 + (CA)n Simple_repeat Simple_repeat 2 34 0 298 267 289 0 chrX 40117731 40117866 -122482064 + MIR3 SINE MIR 34 207 -1 196 222 14 83 chrX 40118192 40118264 -122481666 - L2 LINE L2 -3 3269 3203 630 320 97 45 chrX 40118687 40119150 -122480780 - L2 LINE L2 -23 3290 2804 189 302 0 63 chrX 40119275 40119338 -122480592 - MIR SINE MIR -172 90 32 2835 118 31 2 chrX 40119476 40119892 -122480038 - MSTA LTR MaLR 0 428 1 2377 178 36 26 chrX 40120377 40120729 -122479201 + MLT1D LTR MaLR 1 361 -144 5646 78 78 0 chrX 40120729 40121495 -122478435 - LTR12 LTR ERV1 0 826 1 2377 178 36 26 chrX 40121495 40121642 -122478288 + MLT1D LTR MaLR 361 505 0 1724 194 7 3 chrX 40122526 40122819 -122477111 + AluJb SINE Alu 1 294 -18 2377 61 0 16 chrX 40122826 40123163 -122476767 + AluY SINE Alu 1 311 0 262 207 35 0 chrX 40123207 40123265 -122476665 + AluJ/monomer SINE Alu 234 293 -9 197 139 23 0 chrX 40124363 40124406 -122475524 + (CA)n Simple_repeat Simple_repeat 1 44 0 * 393 139 23 12 chrX 40124405 40124491 -122475439 + (TA)n Simple_repeat Simple_repeat 2 88 0 279 303 152 0 chrX 40124491 40124623 -122475307 + Charlie8 DNA MER1_type 47 198 -2219 1103 265 12 19 chrX 40125103 40125524 -122474406 + L2 LINE L2 2738 3156 -157 1407 145 11 25 chrX 40125524 40125806 -122474124 - Tigger6 DNA MER2_type -1 1596 1319 4218 145 38 43 chrX 40125811 40126189 -122473741 + L1MB4 LINE L1 5336 5715 -465 2068 125 13 16 chrX 40126189 40126494 -122473436 - AluSx SINE Alu -8 304 1 4218 145 38 43 chrX 40126494 40126965 -122472965 + L1MB4 LINE L1 5715 6180 0 2808 149 24 15 chrX 40126983 40127526 -122472404 + L1MA4A LINE L1 5575 6122 -181 390 163 12 0 chrX 40127529 40127609 -122472321 + L1MA4A LINE L1 6188 6268 -35 1906 179 5 18 chrX 40127609 40128001 -122471929 - Tigger6 DNA MER2_type -261 1336 950 241 263 0 0 chrX 40128196 40128272 -122471658 - Tigger3(Golem) DNA MER2_type -1515 1514 1439 1781 174 31 0 chrX 40128372 40128689 -122471241 - Tigger6 DNA MER2_type -756 327 1 622 234 14 21 chrX 40128691 40128836 -122471094 + L2 LINE L2 3160 3303 -10 217 250 0 0 chrX 40128840 40128888 -122471042 + GA-rich Low_complexity Low_complexity 3 50 0 201 325 100 0 chrX 40128890 40128970 -122470960 - MIR3 SINE MIR -40 168 81 786 125 6 30 chrX 40129821 40129989 -122469941 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 390 95 12 107 chrX 40130901 40130985 -122468945 + MER91C DNA MER1_type 1 76 -64 347 283 104 9 chrX 40131092 40131198 -122468732 + L2 LINE L2 3156 3271 -1 1447 191 58 25 chrX 40132020 40132382 -122467548 + MLT1A2 LTR MaLR 1 374 0 496 269 196 12 chrX 40132406 40132604 -122467326 + MIR SINE MIR 13 248 -14 370 340 166 34 chrX 40134550 40135242 -122464688 + L2 LINE L2 2286 3064 -208 1808 227 48 10 chrX 40135758 40136238 -122463692 + L1MEc LINE L1 37 534 -5862 581 252 6 16 chrX 40136273 40136466 -122463464 + L1MA10 LINE L1 5979 6331 -3 1584 178 125 0 chrX 40136688 40137009 -122462921 - MLT1A1 LTR MaLR 0 365 5 1637 137 35 3 chrX 40138075 40138525 -122461405 + L1M2 LINE L1 5007 5468 -743 562 186 24 60 chrX 40138798 40138965 -122460965 + MLT1H LTR MaLR 1 161 -388 332 298 119 35 chrX 40139120 40139439 -122460491 + MLT1J1 LTR MaLR 78 423 -23 742 196 4 122 chrX 40139454 40139684 -122460246 + MER63A DNA MER1_type 8 210 0 293 234 16 16 chrX 40139895 40139959 -122459971 + L2 LINE L2 3205 3268 -4 238 123 0 46 chrX 40140097 40140162 -122459768 - L1MCa LINE L1 -4359 2067 2006 234 139 0 0 chrX 40140334 40140370 -122459560 + MIR SINE MIR 114 149 -59 2062 29 50 0 chrX 40140587 40140828 -122459102 - AluY SINE Alu -9 302 50 2257 108 0 0 chrX 40140966 40141263 -122458667 + AluSx SINE Alu 1 297 -15 2125 118 0 13 chrX 40141743 40142049 -122457881 + AluSx SINE Alu 1 302 -10 675 168 0 133 chrX 40142195 40142391 -122457539 - L1MB8 LINE L1 -78 6100 5931 * 3015 137 29 129 chrX 40142379 40143604 -122456326 - L1MA8 LINE L1 -210 6081 4982 2318 108 31 0 chrX 40143619 40143971 -122455959 - L1PA16 LINE L1 -2 6164 5802 1164 114 10 10 chrX 40143971 40144164 -122455766 + L1PA16 LINE L1 5621 5813 -353 * 1999 145 3 6 chrX 40144160 40144511 -122455419 - L1MA8 LINE L1 -1148 4998 4649 * 3799 121 10 80 chrX 40144510 40145323 -122454607 + L1MA8 LINE L1 3881 4636 -1510 1647 179 28 3 chrX 40145348 40145633 -122454297 - AluSx SINE Alu -20 292 1 2616 246 97 96 chrX 40146892 40147230 -122452700 + HAL1 LINE L1 99 435 -2072 2396 33 40 23 chrX 40147230 40147532 -122452398 - AluY SINE Alu -4 307 1 2616 246 97 96 chrX 40147532 40148678 -122451252 + HAL1 LINE L1 435 1589 -918 2278 101 3 7 chrX 40148678 40148985 -122450945 + AluSx SINE Alu 1 306 -6 2616 246 97 96 chrX 40148985 40149494 -122450436 + HAL1 LINE L1 1589 2096 -411 601 24 24 0 chrX 40149526 40149609 -122450321 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 308 282 0 0 chrX 40149614 40149717 -122450213 + L1ME1 LINE L1 4581 4683 -1463 1022 247 46 27 chrX 40151594 40151966 -122447964 + L1ME1 LINE L1 4677 5055 -1091 2539 155 32 4 chrX 40152018 40152522 -122447408 + L1MA7 LINE L1 5773 6290 -1 1561 138 109 37 chrX 40152597 40152946 -122446984 + THE1C LTR MaLR 1 374 -1 4003 109 15 63 chrX 40152950 40153668 -122446262 + THE1C-int LTR MaLR 4 687 -893 4279 62 7 0 chrX 40153696 40154260 -122445670 - HERVL LTR ERVL -2935 2719 2152 385 143 0 14 chrX 40154260 40154330 -122445600 + MSTA LTR MaLR 360 428 0 2514 74 0 0 chrX 40154355 40154665 -122445265 + AluY SINE Alu 2 311 0 2289 194 60 30 chrX 40154666 40155327 -122444603 + L1ME1 LINE L1 5196 5880 -286 2448 93 3 0 chrX 40155327 40155637 -122444293 + AluSp SINE Alu 1 311 -2 2289 194 60 30 chrX 40155637 40155697 -122444233 + L1ME1 LINE L1 5880 5937 -229 724 103 0 9 chrX 40155701 40155808 -122444122 - HERVL LTR ERVL -3391 2263 2158 677 212 22 22 chrX 40155876 40156055 -122443875 + L1ME1 LINE L1 5983 6161 -5 2207 258 97 30 chrX 40156061 40156897 -122443033 + L1ME LINE L1 3836 4829 -1317 1661 137 103 4 chrX 40156897 40157159 -122442771 + AluJo SINE Alu 1 288 -24 2207 258 97 30 chrX 40157159 40157707 -122442223 + L1ME LINE L1 4829 5339 -807 410 276 0 58 chrX 40157707 40157863 -122442067 + L1ME3 LINE L1 5928 6074 -88 358 258 95 0 chrX 40157936 40158154 -122441776 + L1ME LINE L1 5319 5558 -604 405 0 0 0 chrX 40158164 40158209 -122441721 + (TG)n Simple_repeat Simple_repeat 2 46 0 267 317 84 28 chrX 40158209 40158458 -122441472 + L1ME LINE L1 5615 5877 -287 1786 210 52 38 chrX 40158683 40159157 -122440773 + L1MC4a LINE L1 7267 7751 -57 3090 159 46 11 chrX 40159157 40159767 -122440163 - L1MB7 LINE L1 -17 6167 5537 1786 210 52 38 chrX 40159767 40159826 -122440104 + L1MC4a LINE L1 7751 7808 0 1673 249 89 8 chrX 40159992 40160506 -122439424 - MER21B LTR ERV1 -57 806 251 1288 211 26 73 chrX 40160507 40160890 -122439040 + MLT1A1 LTR MaLR 1 365 0 3835 202 101 143 chrX 40160890 40161418 -122438512 + MLT1A1-int LTR MaLR 1 550 -1185 1980 144 0 7 chrX 40161418 40161723 -122438207 + AluJb SINE Alu 1 303 -9 3835 202 101 143 chrX 40161723 40161891 -122438039 + MLT1A1-int LTR MaLR 550 724 -1011 1275 136 11 0 chrX 40161891 40162100 -122437830 + AluSg/x SINE Alu 96 306 0 3835 202 101 143 chrX 40162100 40163024 -122436906 + MLT1A1-int LTR MaLR 724 1730 -5 1270 219 27 59 chrX 40163031 40163406 -122436524 + MLT1A1 LTR MaLR 3 365 0 784 169 13 133 chrX 40163425 40163650 -122436280 - MER21B LTR ERV1 -646 217 20 310 295 0 0 chrX 40163670 40163748 -122436182 - MER21B LTR ERV1 -773 90 13 705 166 0 83 chrX 40163932 40164077 -122435853 + FLAM_C SINE Alu 1 133 0 318 106 0 0 chrX 40165621 40165639 -122434291 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 318 106 0 0 chrX 40165639 40165686 -122434244 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 296 24 24 0 chrX 40165928 40165969 -122433961 + (TC)n Simple_repeat Simple_repeat 2 43 0 426 20 0 0 chrX 40165970 40166021 -122433909 + (TG)n Simple_repeat Simple_repeat 2 52 0 338 298 8 57 chrX 40166338 40166462 -122433468 - L2 LINE L2 0 3313 3196 602 288 123 48 chrX 40166895 40167270 -122432660 - L2 LINE L2 -9 3304 2902 927 123 19 80 chrX 40169358 40169570 -122430360 + L1MA10 LINE L1 6129 6327 -7 267 357 70 35 chrX 40171054 40171197 -122428733 + L2 LINE L2 3125 3272 0 414 0 0 0 chrX 40171855 40171901 -122428029 + (CA)n Simple_repeat Simple_repeat 2 47 0 351 0 0 0 chrX 40173042 40173081 -122426849 + (TG)n Simple_repeat Simple_repeat 1 39 0 1278 85 0 40 chrX 40173942 40174017 -122425913 + L1PB1 LINE L1 5960 6036 -115 2427 76 3 0 chrX 40174017 40174318 -122425612 + AluY SINE Alu 1 302 -9 1278 85 0 40 chrX 40174318 40174441 -122425489 + L1PB1 LINE L1 6036 6150 -1 210 71 0 0 chrX 40174472 40174500 -122425430 + (A)n Simple_repeat Simple_repeat 1 28 0 293 280 28 37 chrX 40175272 40175379 -122424551 + MIR SINE MIR 80 185 -77 1217 115 46 9 chrX 40175407 40175624 -122424306 + L1MA9 LINE L1 6086 6310 -2 655 225 197 13 chrX 40176075 40176837 -122423093 - L1ME1 LINE L1 0 6166 5288 524 302 97 67 chrX 40179391 40179882 -122420048 + L2 LINE L2 2782 3306 -7 30 27 0 0 chrX 40180700 40180737 -122419193 + AT_rich Low_complexity Low_complexity 1 37 0 529 119 12 0 chrX 40180792 40180876 -122419054 - HY3 scRNA scRNA -6 95 11 700 266 58 19 chrX 40182116 40182323 -122417607 + MIR SINE MIR 33 247 -15 191 292 219 31 chrX 40182458 40182650 -122417280 - MIR SINE MIR -16 246 19 2225 104 27 0 chrX 40183282 40183402 -122416528 + AluSg SINE Alu 1 116 -194 184 30 61 0 chrX 40183402 40183435 -122416495 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2225 104 27 0 chrX 40183435 40183612 -122416318 + AluSg SINE Alu 116 306 -4 275 270 30 0 chrX 40184340 40184440 -122415490 - L2 LINE L2 -136 3177 3075 338 290 138 48 chrX 40185075 40185306 -122414624 + MIR SINE MIR 10 261 -1 997 204 51 0 chrX 40185351 40185586 -122414344 - MER46C DNA MER2_type -66 272 26 21 36 0 0 chrX 40187764 40187792 -122412138 + AT_rich Low_complexity Low_complexity 1 28 0 222 261 17 16 chrX 40191813 40191932 -122407998 + MIR SINE MIR 20 228 -34 299 336 26 0 chrX 40193126 40193239 -122406691 + MIR SINE MIR 34 149 -113 1705 162 37 4 chrX 40193374 40193493 -122406437 + AluJo SINE Alu 1 115 -197 306 0 0 0 chrX 40193493 40193527 -122406403 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1705 162 37 4 chrX 40193527 40193678 -122406252 + AluJo SINE Alu 115 280 -32 230 0 87 22 chrX 40193679 40193725 -122406205 + A-rich Low_complexity Low_complexity 2 50 0 207 278 0 42 chrX 40194188 40194260 -122405670 + G-rich Low_complexity Low_complexity 4 72 0 207 175 0 0 chrX 40196210 40196250 -122403680 + (TGG)n Simple_repeat Simple_repeat 1 40 0 489 233 9 0 chrX 40197289 40197405 -122402525 + L1MD2 LINE L1 6227 6343 -16 1178 190 289 33 chrX 40197721 40198130 -122401800 - HsTC2c DNA Tc2 0 729 226 2064 276 151 42 chrX 40198189 40199616 -122400314 - L2 LINE L2 0 3313 1716 283 339 191 6 chrX 40199639 40199807 -122400123 - L2 LINE L2 -1702 1612 1414 609 257 24 44 chrX 40200572 40200778 -122399152 + MIR SINE MIR 3 204 -58 25 65 0 0 chrX 40200947 40200993 -122398937 + AT_rich Low_complexity Low_complexity 1 46 0 321 295 62 39 chrX 40201225 40201354 -122398576 - MIR3 SINE MIR -66 142 11 226 297 59 20 chrX 40201771 40201872 -122398058 - L2 LINE L2 0 3313 3209 236 218 18 0 chrX 40202688 40202743 -122397187 - Charlie8 DNA MER1_type -2227 190 135 221 313 16 0 chrX 40202859 40202923 -122397007 + L2 LINE L2 3249 3313 0 2014 128 0 0 chrX 40204127 40204401 -122395529 + AluSx SINE Alu 24 297 -15 352 183 19 39 chrX 40204548 40204652 -122395278 + L1MB2 LINE L1 6070 6171 0 289 291 24 39 chrX 40205413 40205540 -122394390 + L2 LINE L2 3182 3306 -7 384 264 33 77 chrX 40206020 40206202 -122393728 + L3b LINE CR1 1223 1396 -187 573 214 12 69 chrX 40206481 40206654 -122393276 - MER20 DNA MER1_type -56 163 1 356 385 42 35 chrX 40209027 40209313 -122390617 + L1MDa LINE L1 1 288 -6252 2196 216 126 27 chrX 40209833 40210767 -122389163 + L1MDa LINE L1 956 1935 -4605 1282 258 125 31 chrX 40210768 40211525 -122388405 + L1MDa LINE L1 2259 3060 -3480 1899 115 51 63 chrX 40211525 40211856 -122388074 + MER1B DNA MER1_type 1 327 -12 1749 218 57 32 chrX 40211856 40212100 -122387830 + L1MDa LINE L1 3101 3338 -3202 2378 107 0 0 chrX 40212100 40212409 -122387521 + AluSx SINE Alu 1 309 -3 1749 218 57 32 chrX 40212409 40212780 -122387150 + L1MDa LINE L1 3338 3731 -2809 818 243 81 21 chrX 40212809 40213143 -122386787 - L1M4 LINE L1 -2392 3754 3401 254 258 16 0 chrX 40213947 40214009 -122385921 - MIR3 SINE MIR -23 185 123 335 219 27 0 chrX 40215027 40215100 -122384830 + L2 LINE L2 3232 3306 -7 333 270 141 31 chrX 40215269 40215432 -122384498 + MIR SINE MIR 58 238 -24 186 330 32 53 chrX 40216256 40216350 -122383580 + MIR3 SINE MIR 69 160 -48 268 204 30 23 chrX 40218402 40218534 -122381396 + GA-rich Low_complexity Low_complexity 1 133 0 1604 136 62 49 chrX 40219943 40220192 -122379738 + L1MD3 LINE L1 7684 7939 -56 2405 63 3 47 chrX 40220192 40220511 -122379419 - AluSp SINE Alu -8 305 1 1604 136 62 49 chrX 40220511 40220569 -122379361 + L1MD3 LINE L1 7939 7995 0 838 136 0 50 chrX 40220625 40220765 -122379165 + FLAM_C SINE Alu 1 133 0 1952 103 8 0 chrX 40224397 40224660 -122375270 + AluSx SINE Alu 38 302 -10 742 128 37 0 chrX 40224660 40224764 -122375166 + AluJo SINE Alu 29 136 -176 27 81 0 0 chrX 40224798 40224860 -122375070 + AT_rich Low_complexity Low_complexity 1 62 0 2349 150 40 2 chrX 40226568 40226968 -122372962 + L1MB2 LINE L1 5755 6169 -2 384 22 0 0 chrX 40227956 40228001 -122371929 + (CA)n Simple_repeat Simple_repeat 2 46 0 1762 147 0 33 chrX 40228573 40228879 -122371051 + AluJo SINE Alu 1 296 -16 219 238 0 0 chrX 40229881 40229923 -122370007 + polypurine Low_complexity Low_complexity 4 45 0 2356 254 58 44 chrX 40230210 40230657 -122369273 + L2 LINE L2 1042 1481 -1833 861 291 78 26 chrX 40230657 40231042 -122368888 - MLT1I LTR MaLR -2 407 3 2356 254 58 44 chrX 40231042 40231253 -122368677 + L2 LINE L2 1481 1716 -1598 1733 184 0 0 chrX 40231253 40231572 -122368358 + AluJo SINE Alu 1 319 0 2356 254 58 44 chrX 40231572 40231711 -122368219 + L2 LINE L2 1716 1852 -1462 1646 108 21 21 chrX 40231723 40231963 -122367967 - MSTA LTR MaLR 0 428 189 4231 85 9 0 chrX 40231963 40232507 -122367423 - L1PA8 LINE L1 -1 6171 5623 3289 80 0 12 chrX 40232507 40233066 -122366864 + L1PA8A LINE L1 4930 5479 -652 2131 95 18 11 chrX 40233066 40233370 -122366560 + AluSx SINE Alu 1 312 0 3289 80 0 12 chrX 40233370 40233568 -122366362 + L1PA8A LINE L1 5479 5678 -453 1388 108 31 0 chrX 40233568 40233763 -122366167 - MSTA LTR MaLR -227 201 1 1012 306 73 23 chrX 40233765 40234206 -122365724 + L2 LINE L2 1859 2321 -993 232 353 12 0 chrX 40234242 40234327 -122365603 - MIR3 SINE MIR -36 172 87 1816 163 0 10 chrX 40234926 40235235 -122364695 + AluSx SINE Alu 1 306 0 218 342 0 13 chrX 40235423 40235502 -122364428 + MIR3 SINE MIR 103 180 -28 1664 149 60 26 chrX 40235552 40235854 -122364076 + AluJo SINE Alu 1 312 0 180 0 0 0 chrX 40235999 40236019 -122363911 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1668 148 10 64 chrX 40236022 40236320 -122363610 - AluJb SINE Alu -30 282 1 1634 258 161 55 chrX 40236349 40236779 -122363151 + L1M4 LINE L1 2965 3348 -2798 2300 88 3 0 chrX 40236779 40237073 -122362857 + AluSg SINE Alu 1 295 -15 1634 258 161 55 chrX 40237073 40237084 -122362846 + L1M4 LINE L1 3348 3356 -2790 2205 116 20 0 chrX 40237084 40237385 -122362545 + AluSx SINE Alu 1 307 -5 1634 258 161 55 chrX 40237385 40237716 -122362214 + L1M4 LINE L1 3356 3651 -2495 2241 123 0 0 chrX 40237716 40238018 -122361912 - AluSx SINE Alu -10 302 1 1634 258 161 55 chrX 40238018 40238581 -122361349 + L1M4 LINE L1 3651 4443 -1703 291 261 125 45 chrX 40238677 40238853 -122361077 + L1ME3A LINE L1 5927 6116 -54 2516 50 0 3 chrX 40238900 40239198 -122360732 - AluY SINE Alu -14 297 1 223 382 59 0 chrX 40239376 40239499 -122360431 + MIR SINE MIR 17 147 -61 183 344 172 7 chrX 40240100 40240251 -122359679 + MIR SINE MIR 1 176 -86 1940 116 38 27 chrX 40240579 40240872 -122359058 + AluSx SINE Alu 1 296 -16 1164 231 0 22 chrX 40241243 40241472 -122358458 - MER58A DNA MER1_type 0 224 1 757 181 144 12 chrX 40241480 40241640 -122358290 - MER5A DNA MER1_type 0 189 9 416 291 99 14 chrX 40241656 40241689 -122358241 + MER5B DNA MER1_type 17 46 -132 240 35 0 0 chrX 40241689 40241718 -122358212 + (CA)n Simple_repeat Simple_repeat 2 30 0 416 291 99 14 chrX 40241718 40241825 -122358105 + MER5B DNA MER1_type 46 169 -9 2451 90 0 0 chrX 40242107 40242419 -122357511 + AluSx SINE Alu 1 312 0 787 174 133 31 chrX 40244236 40244432 -122355498 - MER58A DNA MER1_type 0 224 9 2381 77 0 0 chrX 40244497 40244783 -122355147 + AluSg SINE Alu 1 286 -24 2635 107 79 60 chrX 40244952 40245372 -122354558 - MSTC LTR MaLR 0 428 1 1957 147 3 0 chrX 40245621 40245913 -122354017 - AluJb SINE Alu -19 293 1 252 248 238 0 chrX 40246061 40246162 -122353768 - MER5A DNA MER1_type 0 189 65 226 268 62 62 chrX 40246673 40246785 -122353145 + MLT1H1 LTR MaLR 37 148 -407 268 250 238 12 chrX 40246948 40247116 -122352814 + L1ME4a LINE L1 5843 6048 -73 1705 100 4 0 chrX 40247191 40247421 -122352509 - AluSq SINE Alu -11 302 72 185 257 100 14 chrX 40247464 40247534 -122352396 + MIR SINE MIR 79 154 -108 2012 113 0 53 chrX 40247538 40247856 -122352074 + AluSq SINE Alu 11 311 -2 772 109 40 103 chrX 40247961 40248135 -122351795 - MLT1E2 LTR MaLR -446 180 18 2505 149 51 33 chrX 40248150 40248599 -122351331 - MSTB2 LTR MaLR 0 457 1 27 0 0 0 chrX 40248636 40248663 -122351267 + AT_rich Low_complexity Low_complexity 1 27 0 210 382 0 9 chrX 40249427 40249537 -122350393 + GA-rich Low_complexity Low_complexity 3 111 0 212 371 46 7 chrX 40249706 40249857 -122350073 - L2 LINE L2 -1637 1677 1521 258 255 160 9 chrX 40250093 40250199 -122349731 + MIR3 SINE MIR 81 202 -6 352 216 78 85 chrX 40250457 40250610 -122349320 - MIR SINE MIR -79 183 32 470 257 97 80 chrX 40252188 40252904 -122347026 + L1ME LINE L1 534 1213 -4867 2171 125 70 9 chrX 40253124 40253467 -122346463 + MER47A DNA MER2_type 1 364 -2 4100 95 39 47 chrX 40253543 40253981 -122345949 + L1MA3 LINE L1 5666 6106 -199 2027 130 3 16 chrX 40253981 40254150 -122345780 - AluSx SINE Alu -9 303 138 2086 78 0 19 chrX 40254150 40254418 -122345512 - AluY SINE Alu -9 302 40 2027 130 3 16 chrX 40254418 40254555 -122345375 - AluSx SINE Alu -174 138 1 4100 95 39 47 chrX 40254555 40254567 -122345363 + L1MA3 LINE L1 6106 6117 -188 1799 148 3 30 chrX 40254567 40254872 -122345058 - AluJb SINE Alu -15 297 1 4100 95 39 47 chrX 40254872 40255065 -122344865 + L1MA3 LINE L1 6117 6305 0 2023 128 7 10 chrX 40255205 40255511 -122344419 + AluSx SINE Alu 1 305 -7 2365 106 0 3 chrX 40255511 40255822 -122344108 + AluSg SINE Alu 1 310 0 346 289 23 81 chrX 40255836 40255883 -122344047 - MIR3 SINE MIR -16 192 144 2295 73 3 22 chrX 40255883 40256199 -122343731 + AluSg SINE Alu 1 310 0 346 289 23 81 chrX 40256199 40256324 -122343606 - MIR3 SINE MIR -64 144 30 27 49 0 0 chrX 40256389 40256430 -122343500 + AT_rich Low_complexity Low_complexity 1 41 0 519 17 0 0 chrX 40256562 40256622 -122343308 + (CA)n Simple_repeat Simple_repeat 2 61 0 2232 109 0 16 chrX 40256825 40257128 -122342802 + AluSg SINE Alu 1 298 -12 1646 133 126 0 chrX 40257722 40257985 -122341945 + AluSx SINE Alu 1 296 -16 2234 101 0 32 chrX 40257989 40258305 -122341625 + AluSx SINE Alu 1 306 -6 26 0 0 0 chrX 40258307 40258333 -122341597 + AT_rich Low_complexity Low_complexity 1 26 0 222 91 0 0 chrX 40258600 40258633 -122341297 + (TC)n Simple_repeat Simple_repeat 1 33 0 2357 89 3 16 chrX 40258682 40258996 -122340934 - AluY SINE Alu -1 310 1 2215 110 3 0 chrX 40259104 40259404 -122340526 - AluSg SINE Alu -9 301 1 2045 213 47 40 chrX 40260891 40261421 -122338509 + MLT1H LTR MaLR 1 534 -15 184 349 12 36 chrX 40261450 40261533 -122338397 - L2 LINE L2 -1 3271 3191 514 329 82 64 chrX 40261612 40262419 -122337511 - L2 LINE L2 -221 3051 2230 1345 204 42 13 chrX 40262975 40263431 -122336499 + L1MB3 LINE L1 5078 5554 -626 1315 197 59 4 chrX 40263431 40263685 -122336245 + AluJo SINE Alu 13 280 -32 2229 108 3 0 chrX 40263685 40263990 -122335940 - AluSx SINE Alu -6 306 1 3152 149 39 14 chrX 40264017 40264541 -122335389 + L1MB3 LINE L1 5595 6136 -47 1906 129 61 4 chrX 40264541 40264820 -122335110 + AluSx SINE Alu 1 295 -17 3152 149 39 14 chrX 40264820 40264867 -122335063 + L1MB3 LINE L1 6136 6180 -3 2392 189 39 82 chrX 40264879 40265598 -122334332 + L1ME3 LINE L1 5426 6113 -49 762 120 0 0 chrX 40265598 40265740 -122334190 - AluSg/x SINE Alu 0 330 189 1723 170 0 52 chrX 40266139 40266468 -122333462 - AluJb SINE Alu 0 312 1 2097 102 7 0 chrX 40266738 40267047 -122332883 + AluSx SINE Alu 9 312 0 1292 194 61 7 chrX 40267465 40267759 -122332171 + AluJo SINE Alu 1 310 -2 2666 30 0 0 chrX 40267759 40268054 -122331876 - AluY SINE Alu -16 295 1 22 0 0 0 chrX 40268054 40268076 -122331854 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chrX 40269257 40269298 -122330632 + (TG)n Simple_repeat Simple_repeat 1 41 0 399 68 0 0 chrX 40269298 40269357 -122330573 + (GA)n Simple_repeat Simple_repeat 2 60 0 319 271 101 110 chrX 40270268 40270894 -122329036 + L1M2 LINE L1 815 1384 -5465 22 0 0 0 chrX 40273378 40273400 -122326530 + AT_rich Low_complexity Low_complexity 1 22 0 244 136 51 0 chrX 40274012 40274071 -122325859 + GA-rich Low_complexity Low_complexity 1 62 0 1504 141 144 4 chrX 40274123 40274379 -122325551 + AluSx SINE Alu 1 292 -10 1620 191 115 28 chrX 40274564 40274743 -122325187 + MLT1C LTR MaLR 6 168 -299 369 0 0 0 chrX 40274743 40274784 -122325146 + (CA)n Simple_repeat Simple_repeat 2 42 0 1620 191 115 28 chrX 40274784 40275029 -122324901 + MLT1C LTR MaLR 168 467 0 2237 109 3 0 chrX 40275130 40275423 -122324507 + AluSx SINE Alu 1 294 -18 185 235 106 82 chrX 40275464 40275549 -122324381 - L3 LINE CR1 0 1577 1491 2188 118 0 7 chrX 40275574 40275879 -122324051 - AluSx SINE Alu -9 303 1 2151 114 42 36 chrX 40276214 40276547 -122323383 - MER1B DNA MER1_type 0 337 3 1631 154 91 51 chrX 40276680 40277031 -122322899 - MLT1A1 LTR MaLR 0 365 1 2105 132 0 0 chrX 40277895 40278190 -122321740 + AluSx SINE Alu 2 296 -16 618 277 20 15 chrX 40278560 40278762 -122321168 + L2 LINE L2 3109 3311 -2 921 143 0 0 chrX 40278840 40278973 -122320957 + FLAM_C SINE Alu 1 133 0 800 203 40 0 chrX 40279955 40280124 -122319806 - MER45A DNA AcHobo 0 178 1 462 319 0 9 chrX 40280124 40280237 -122319693 - MER5B DNA MER1_type -62 116 5 5257 75 5 3 chrX 40280871 40281521 -122318409 + L1PA11 LINE L1 5524 6174 0 341 248 7 95 chrX 40282032 40282169 -122317761 + LTR16A1 LTR ERVL 1 125 -332 426 281 23 9 chrX 40282260 40282512 -122317418 + LTR16A1 LTR ERVL 166 457 0 2264 91 3 0 chrX 40282959 40283245 -122316685 + AluSp SINE Alu 1 287 -26 1412 268 75 27 chrX 40283271 40283749 -122316181 - LTR33 LTR ERVL -2 519 19 2699 153 19 16 chrX 40283796 40284221 -122315709 + MSTB LTR MaLR 1 426 0 2366 109 0 0 chrX 40284974 40285286 -122314644 + AluSx SINE Alu 1 312 0 4839 153 23 38 chrX 40285466 40286330 -122313600 + MER6 DNA MER2_type 2 852 -13 206 329 0 25 chrX 40286680 40286759 -122313171 - L2 LINE L2 0 3272 3196 1983 170 21 128 chrX 40287052 40287576 -122312354 + MLT1D LTR MaLR 1 468 -37 647 273 35 0 chrX 40287715 40287887 -122312043 + MLT1G LTR MaLR 1 178 -412 476 171 108 27 chrX 40288721 40288832 -122311098 - L1MC4 LINE L1 -143 7899 7780 1884 162 0 16 chrX 40289549 40289717 -122310213 - AluJb SINE Alu -8 304 142 2043 134 0 10 chrX 40289717 40290023 -122309907 - AluJb SINE Alu -9 303 1 1884 162 0 16 chrX 40290023 40290163 -122309767 - AluJb SINE Alu -170 142 1 22 0 0 0 chrX 40290242 40290264 -122309666 + AT_rich Low_complexity Low_complexity 1 22 0 1542 90 19 0 chrX 40290593 40290804 -122309126 - Tigger1 DNA MER2_type 0 2418 2204 796 191 0 21 chrX 40290805 40290946 -122308984 - Tigger1 DNA MER2_type -2280 138 1 1310 233 46 11 chrX 40290947 40291316 -122308614 - L1M4 LINE L1 -1808 4338 3957 537 271 59 49 chrX 40291812 40292015 -122307915 + MIR3 SINE MIR 4 208 0 2905 218 28 7 chrX 40292683 40293253 -122306677 + MLT1G LTR MaLR 1 582 -8 509 273 0 38 chrX 40293632 40293764 -122306166 + MIR SINE MIR 33 159 -103 430 238 133 20 chrX 40294218 40294369 -122305561 + MIR SINE MIR 20 187 -75 2161 104 7 3 chrX 40294669 40294956 -122304974 + AluSp SINE Alu 1 288 -25 357 24 0 0 chrX 40294956 40294998 -122304932 + (CA)n Simple_repeat Simple_repeat 2 43 0 778 253 108 8 chrX 40294999 40295240 -122304690 + L1ME3 LINE L1 5897 6161 -1 342 0 0 0 chrX 40295835 40295873 -122304057 + (TG)n Simple_repeat Simple_repeat 2 39 0 2097 132 0 0 chrX 40296558 40296854 -122303076 - AluJb SINE Alu -16 296 1 938 121 0 8 chrX 40296888 40297020 -122302910 - AluSq SINE Alu -56 257 127 2140 127 3 7 chrX 40297028 40297336 -122302594 - AluSx SINE Alu -5 307 1 230 349 66 0 chrX 40297383 40297489 -122302441 + L2 LINE L2 3201 3313 0 2597 40 0 0 chrX 40298210 40298506 -122301424 - AluY SINE Alu -15 296 1 25 0 0 0 chrX 40299021 40299046 -122300884 + AT_rich Low_complexity Low_complexity 1 25 0 2523 157 25 54 chrX 40299595 40300040 -122299890 + MSTB1 LTR MaLR 1 432 0 180 0 0 0 chrX 40300651 40300671 -122299259 + (A)n Simple_repeat Simple_repeat 1 20 0 2311 86 21 0 chrX 40300672 40300963 -122298967 + AluSx SINE Alu 1 297 -15 25 31 0 0 chrX 40300963 40300995 -122298935 + AT_rich Low_complexity Low_complexity 1 32 0 2300 162 30 10 chrX 40301005 40301400 -122298530 + MER65A LTR ERV1 42 444 -1 293 298 16 16 chrX 40301407 40301531 -122298399 + A-rich Low_complexity Low_complexity 2 125 0 494 268 24 8 chrX 40302355 40302482 -122297448 + MER94 DNA DNA 1 129 -5 180 111 0 0 chrX 40302529 40302556 -122297374 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1922 155 0 10 chrX 40302592 40302889 -122297041 + AluJb SINE Alu 1 294 -18 1410 181 88 78 chrX 40303582 40303951 -122295979 + MLT2D LTR ERVL 1 376 -38 607 69 20 10 chrX 40303951 40304053 -122295877 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 1410 181 88 78 chrX 40304053 40304091 -122295839 + MLT2D LTR ERVL 376 412 -2 1941 152 13 22 chrX 40305486 40305801 -122294129 + AluJo SINE Alu 1 312 0 2200 103 3 7 chrX 40305830 40306131 -122293799 + AluSx SINE Alu 1 300 -12 2147 134 13 0 chrX 40306255 40306561 -122293369 - AluSx SINE Alu 0 312 3 540 266 57 13 chrX 40306596 40306754 -122293176 + MIR SINE MIR 11 175 -87 1314 183 18 53 chrX 40306823 40307108 -122292822 - LTR16C LTR ERVL -6 485 211 215 333 0 0 chrX 40307116 40307185 -122292745 - L2 LINE L2 -60 3253 3185 207 319 0 42 chrX 40307359 40307431 -122292499 + L2 LINE L2 2997 3065 -248 200 257 54 0 chrX 40307558 40307632 -122292298 + L2 LINE L2 3193 3270 -2 2030 116 3 10 chrX 40308007 40308300 -122291630 - AluJb SINE Alu -21 291 1 1392 194 45 36 chrX 40308610 40308967 -122290963 - Tigger7 DNA MER2_type 0 2491 1 3326 130 56 30 chrX 40308969 40309330 -122290600 + Tigger6a DNA MER2_type 420 803 -794 2167 95 0 0 chrX 40309330 40309604 -122290326 - AluSx SINE Alu -15 297 24 3326 130 56 30 chrX 40309604 40309833 -122290097 + Tigger6a DNA MER2_type 803 1025 -58 201 108 0 0 chrX 40310136 40310173 -122289757 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1385 158 130 0 chrX 40310176 40310422 -122289508 - AluJo SINE Alu -31 281 4 399 160 40 13 chrX 40310654 40310729 -122289201 + MER92B LTR ERV1 512 588 -48 24 0 0 0 chrX 40311639 40311663 -122288267 + AT_rich Low_complexity Low_complexity 1 24 0 2012 110 71 0 chrX 40311670 40311952 -122287978 + AluSp SINE Alu 1 302 -11 314 89 0 0 chrX 40311952 40311997 -122287933 - L1MB2 LINE L1 -9 6162 6118 881 196 5 22 chrX 40312077 40312261 -122287669 - L1MB2 LINE L1 -38 6133 5953 390 235 76 68 chrX 40312261 40312320 -122287610 + MIR SINE MIR 130 187 -75 1962 165 51 11 chrX 40312320 40312671 -122287259 + MLT1A1 LTR MaLR 1 365 0 390 235 76 68 chrX 40312671 40312743 -122287187 + MIR SINE MIR 187 262 0 402 249 53 35 chrX 40313083 40313252 -122286678 + Charlie8 DNA MER1_type 40 211 -2206 2301 223 15 47 chrX 40313484 40313513 -122286417 - LTR40a LTR ERVL -2 517 489 3020 103 5 0 chrX 40313513 40313922 -122286008 - L1PA12 LINE L1 0 6168 5758 2301 223 15 47 chrX 40313922 40314220 -122285710 - LTR40a LTR ERVL -30 489 211 1606 106 13 46 chrX 40314220 40314457 -122285473 - MER30 DNA MER1_type 0 230 2 2301 223 15 47 chrX 40314457 40314662 -122285268 - LTR40a LTR ERVL -308 211 1 2512 200 77 107 chrX 40314762 40315018 -122284912 - MER21B LTR ERV1 -63 800 538 2101 103 21 7 chrX 40315018 40315300 -122284630 + AluSx SINE Alu 1 286 -26 2512 200 77 107 chrX 40315300 40315849 -122284081 - MER21B LTR ERV1 -325 538 19 334 226 0 0 chrX 40315873 40315935 -122283995 - MER21B LTR ERV1 -776 87 26 1703 167 42 0 chrX 40315935 40316223 -122283707 - AluSx SINE Alu -12 300 1 570 313 63 56 chrX 40316304 40316973 -122282957 - L2 LINE L2 0 3272 2376 828 54 0 1 chrX 40318376 40318493 -122281437 - L1P4 LINE L1 -483 5683 5568 2099 103 7 14 chrX 40318936 40319228 -122280702 - AluSx SINE Alu -22 290 1 801 151 0 0 chrX 40319606 40319725 -122280205 - FLAM_C SINE Alu -24 119 1 474 204 49 56 chrX 40320498 40320640 -122279290 + MIR3 SINE MIR 11 151 -57 231 36 0 0 chrX 40320806 40320834 -122279096 + (TC)n Simple_repeat Simple_repeat 1 28 0 2208 104 20 0 chrX 40320940 40321239 -122278691 - AluSc SINE Alu -4 305 1 3278 118 21 58 chrX 40321318 40321727 -122278203 + L1MA7 LINE L1 5693 6073 -218 2101 104 7 11 chrX 40321727 40322014 -122277916 + AluSg SINE Alu 1 286 -24 3278 118 21 58 chrX 40322014 40322220 -122277710 + L1MA7 LINE L1 6073 6285 -6 1097 247 124 29 chrX 40322503 40322953 -122276977 + LTR33 LTR ERVL 29 521 0 455 264 119 0 chrX 40322953 40323186 -122276744 - LTR33A LTR ERVL -11 512 252 335 280 22 49 chrX 40323393 40323555 -122276375 + MIR SINE MIR 57 214 -48 571 228 35 0 chrX 40324279 40324393 -122275537 + MER5B DNA MER1_type 1 118 -60 5602 103 12 5 chrX 40324398 40325250 -122274680 - L1PA15 LINE L1 -6 6159 5302 319 164 0 33 chrX 40325250 40325311 -122274619 + MER5B DNA MER1_type 115 173 -5 268 302 54 23 chrX 40325647 40325776 -122274154 - MIR3 SINE MIR -73 135 3 2205 101 30 0 chrX 40326190 40326487 -122273443 - AluSx SINE Alu -6 306 1 556 125 194 78 chrX 40326757 40327011 -122272919 - MER4C LTR ERV1 -18 447 167 307 176 15 114 chrX 40327020 40327151 -122272779 - MER4A LTR ERV1 -322 342 225 338 189 126 53 chrX 40327281 40327376 -122272554 - MER5A DNA MER1_type -1 188 87 2071 90 29 26 chrX 40327396 40327707 -122272223 - AluSx SINE Alu 0 312 1 625 74 16 41 chrX 40327716 40327837 -122272093 + (TTTC)n Simple_repeat Simple_repeat 4 121 0 2258 88 13 3 chrX 40327846 40328153 -122271777 - AluSx SINE Alu -2 310 1 1463 204 52 36 chrX 40328290 40328763 -122271167 - MER74B LTR ERVL 0 622 55 2518 20 7 20 chrX 40328775 40329076 -122270854 + AluY SINE Alu 1 297 -14 1547 149 84 8 chrX 40329393 40329690 -122270240 - AluJo SINE Alu 0 317 1 23 33 0 0 chrX 40330663 40330693 -122269237 + AT_rich Low_complexity Low_complexity 1 30 0 193 314 118 0 chrX 40330969 40331071 -122268859 + L3 LINE CR1 1301 1414 -163 528 305 138 5 chrX 40331155 40331358 -122268572 - MIR SINE MIR -13 249 20 357 107 18 0 chrX 40331883 40331939 -122267991 + Tigger2a DNA MER2_type 1 57 -377 919 200 0 0 chrX 40333468 40333628 -122266302 - MER8 DNA MER2_type -78 161 2 180 0 0 0 chrX 40333940 40333960 -122265970 + (A)n Simple_repeat Simple_repeat 1 20 0 2161 131 3 0 chrX 40334276 40334574 -122265356 + AluSx SINE Alu 1 299 -13 1622 159 55 17 chrX 40335083 40335373 -122264557 - AluJo SINE Alu -11 301 1 592 165 0 0 chrX 40335630 40335745 -122264185 - L1MA7 LINE L1 -5 6286 6172 1009 283 96 47 chrX 40336196 40336454 -122263476 - L1MC4a LINE L1 -743 5403 5159 2293 97 0 3 chrX 40336454 40336753 -122263177 + AluSp SINE Alu 2 299 -14 1009 283 96 47 chrX 40336753 40337169 -122262761 - L1MC4a LINE L1 -987 5159 4765 2408 93 0 0 chrX 40337169 40337469 -122262461 - AluSg SINE Alu -10 300 1 1009 283 96 47 chrX 40337469 40337901 -122262029 - L1MC4a LINE L1 -1381 4765 4725 2654 33 0 0 chrX 40337901 40338203 -122261727 - AluY SINE Alu -9 302 1 1009 283 96 47 chrX 40338203 40338578 -122261352 - L1MC4a LINE L1 -1421 4725 4370 378 40 0 0 chrX 40338586 40338636 -122261294 + MADE1 DNA Mariner 2 51 -29 34 0 0 0 chrX 40338755 40338789 -122261141 + AT_rich Low_complexity Low_complexity 1 34 0 396 308 46 46 chrX 40338789 40338984 -122260946 - L1ME3A LINE L1 -8 6162 5968 403 266 65 13 chrX 40339054 40339208 -122260722 - L1ME3A LINE L1 -230 5940 5779 1602 171 3 50 chrX 40339379 40339701 -122260229 - AluJo SINE Alu -5 307 1 1664 183 4 7 chrX 40339855 40340129 -122259801 - AluJo SINE Alu -12 300 28 884 142 0 8 chrX 40340527 40340661 -122259269 - FLAM_C SINE Alu -6 137 5 2313 199 14 29 chrX 40340782 40341344 -122258586 - L1ME1 LINE L1 -5 6972 6419 2463 83 0 13 chrX 40341357 40341671 -122258259 - AluSx SINE Alu -2 310 1 13250 124 29 19 chrX 40341673 40343708 -122256222 + Tigger1 DNA MER2_type 180 2240 -178 2603 53 0 0 chrX 40343708 40344010 -122255920 - AluY SINE Alu -9 302 1 13250 124 29 19 chrX 40344010 40344190 -122255740 + Tigger1 DNA MER2_type 2240 2417 -1 1359 182 47 84 chrX 40344190 40344702 -122255228 - L1ME1 LINE L1 -877 6080 5588 1385 87 13 48 chrX 40344722 40344847 -122255083 - L1MA1 LINE L1 -402 5900 5785 2453 84 3 3 chrX 40344847 40345158 -122254772 - AluY SINE Alu 0 311 1 1385 87 13 48 chrX 40345158 40345263 -122254667 - L1MA1 LINE L1 -517 5785 5678 352 94 0 0 chrX 40345263 40345313 -122254617 + L1MA3 LINE L1 6253 6305 0 21 0 0 0 chrX 40345313 40345334 -122254596 + AT_rich Low_complexity Low_complexity 1 21 0 1213 173 28 0 chrX 40345371 40345625 -122254305 + L1 LINE L1 4834 5094 -1052 * 2571 242 54 57 chrX 40345619 40348270 -122251660 - L1ME1 LINE L1 -3179 3778 1029 262 274 18 18 chrX 40348629 40348742 -122251188 - L1ME1 LINE L1 -6656 203 91 2206 92 0 0 chrX 40348965 40349269 -122250661 - AluSx SINE Alu 0 304 1 1792 164 31 0 chrX 40350743 40351036 -122248894 - AluJb SINE Alu -8 304 3 546 228 88 47 chrX 40351148 40351341 -122248589 + MIR SINE MIR 1 201 -61 215 384 53 15 chrX 40351483 40351616 -122248314 - L2 LINE L2 -17 3255 3118 2383 71 3 0 chrX 40351625 40351922 -122248008 - AluSx SINE Alu -14 298 1 588 307 39 0 chrX 40352035 40352188 -122247742 + MIR SINE MIR 20 178 -84 209 271 34 0 chrX 40352830 40352889 -122247041 - L2 LINE L2 -7 3265 3205 1114 53 0 0 chrX 40352906 40353037 -122246893 + AluSg SINE Alu 1 131 -179 1527 161 38 7 chrX 40353157 40353448 -122246482 + MSTB2 LTR MaLR 1 300 -157 1260 31 0 0 chrX 40353478 40353639 -122246291 + L1PA5 LINE L1 5898 6058 -96 784 164 6 68 chrX 40353639 40353816 -122246114 + MSTB2 LTR MaLR 290 455 -2 2195 205 67 32 chrX 40355271 40355836 -122244094 + MER77 LTR ERV1 41 598 -7 1177 244 27 64 chrX 40355927 40356336 -122243594 - LTR16A LTR ERVL 0 450 57 835 155 10 125 chrX 40357038 40357131 -122242799 + MER33 DNA MER1_type 61 163 -2422 2190 118 0 3 chrX 40357131 40357437 -122242493 - AluSg1 SINE Alu -4 305 1 835 155 10 125 chrX 40357437 40357539 -122242391 + MER33 DNA MER1_type 163 213 -2372 2382 103 0 0 chrX 40357539 40357849 -122242081 - AluSx SINE Alu -2 310 1 835 155 10 125 chrX 40357849 40357949 -122241981 + MER33 DNA MER1_type 213 323 -1 555 244 15 0 chrX 40357994 40358129 -122241801 + LTR16C LTR ERVL 332 468 -23 329 123 0 0 chrX 40358887 40358951 -122240979 - Alu SINE Alu -252 50 1 246 136 0 0 chrX 40359266 40359310 -122240620 + (TTTTC)n Simple_repeat Simple_repeat 4 47 0 567 0 0 0 chrX 40359629 40359692 -122240238 + (TA)n Simple_repeat Simple_repeat 1 63 0 2298 117 3 0 chrX 40359695 40360004 -122239926 - AluSx SINE Alu -2 310 1 925 154 7 0 chrX 40360023 40360159 -122239771 - FRAM SINE Alu -30 146 10 503 220 8 0 chrX 40360275 40360393 -122239537 - MER69 DNA AcHobo -1 2525 2407 426 265 0 0 chrX 40360394 40360496 -122239434 - MER69 DNA AcHobo -979 247 146 5974 214 31 58 chrX 40360497 40360644 -122239286 - L1M4c LINE L1 -1013 5631 5482 1988 163 0 3 chrX 40360644 40360944 -122238986 + AluJb SINE Alu 1 299 -13 5974 214 31 58 chrX 40360944 40362225 -122237705 - L1M4c LINE L1 -1162 5482 4271 2369 89 0 16 chrX 40362225 40362541 -122237389 - AluSx SINE Alu -1 311 1 5974 214 31 58 chrX 40362541 40363178 -122236752 - L1M4c LINE L1 -2373 4271 3619 1666 182 67 45 chrX 40363204 40363622 -122236308 + MER31B LTR ERV1 1 427 -39 324 43 0 0 chrX 40363624 40363670 -122236260 + MADE1 DNA Mariner 1 46 -34 1120 197 145 8 chrX 40363693 40364044 -122235886 - L1M4 LINE L1 -3144 3500 3102 1559 272 60 14 chrX 40364810 40365319 -122234611 + L2 LINE L2 2517 3048 -265 3397 55 2 73 chrX 40365329 40365836 -122234094 - L1PA8 LINE L1 -16 6156 5686 250 29 0 0 chrX 40365842 40365877 -122234053 + L1PA8 LINE L1 5644 5678 -494 2141 128 0 0 chrX 40365924 40366228 -122233702 - AluSc SINE Alu -5 304 1 210 191 0 0 chrX 40367508 40367550 -122232380 + (CATA)n Simple_repeat Simple_repeat 1 42 0 278 214 333 0 chrX 40367784 40367868 -122232062 + MER5B DNA MER1_type 67 178 0 1139 176 11 0 chrX 40367968 40368155 -122231775 - MER5A DNA MER1_type 0 189 1 536 251 40 6 chrX 40368211 40368386 -122231544 + L1M4 LINE L1 3788 3968 -2178 * 3193 224 33 16 chrX 40368385 40369654 -122230276 - L1M4c LINE L1 -3069 3575 2287 202 94 0 31 chrX 40371523 40371555 -122228375 + (TTC)n Simple_repeat Simple_repeat 3 33 0 6236 207 46 43 chrX 40371556 40371577 -122228353 - L1M4c LINE L1 -4657 2168 2149 873 129 8 0 chrX 40371577 40371709 -122228221 - FLAM_C SINE Alu 0 133 1 6236 207 46 43 chrX 40371709 40372281 -122227649 - L1M4c LINE L1 -4676 2149 1581 2237 87 3 6 chrX 40372281 40372592 -122227338 - L1PA11 LINE L1 0 6174 5865 6236 207 46 43 chrX 40372592 40373971 -122225959 - L1M4c LINE L1 -5244 1581 1 351 44 0 0 chrX 40374763 40374808 -122225122 + (TG)n Simple_repeat Simple_repeat 2 46 0 245 158 32 179 chrX 40375693 40375788 -122224142 - L2 LINE L2 -6 3307 3227 2199 113 14 0 chrX 40376246 40376539 -122223391 + AluSx SINE Alu 1 297 -15 239 130 0 22 chrX 40376699 40376745 -122223185 + (TTTTC)n Simple_repeat Simple_repeat 1 45 0 1399 228 75 61 chrX 40376752 40377330 -122222600 - L2 LINE L2 -1 3312 2713 196 280 0 20 chrX 40377711 40377761 -122222169 + L2 LINE L2 3182 3230 -83 736 265 63 5 chrX 40377945 40378168 -122221762 + MER97c DNA MER1_type? 2 237 -853 5083 230 3 11 chrX 40378199 40380307 -122219623 + L1PA13 LINE L1 1 2444 -4353 2394 106 3 0 chrX 40380307 40380618 -122219312 + AluSp SINE Alu 2 313 0 5083 230 3 11 chrX 40380618 40381754 -122218176 + L1PA13 LINE L1 2444 3587 -3210 2334 132 3 0 chrX 40381783 40382139 -122217791 + L1PA15 LINE L1 5805 6161 -4 9979 220 35 30 chrX 40382182 40383620 -122216310 - L1M3 LINE L1 -516 6627 5198 2081 90 52 10 chrX 40383620 40383909 -122216021 - AluY SINE Alu -10 301 1 1866 149 7 4 chrX 40383915 40384196 -122215734 - AluJb SINE Alu -20 292 11 9979 220 35 30 chrX 40384196 40386058 -122213872 - L1M3 LINE L1 -1949 5194 3183 2255 131 0 3 chrX 40386058 40386370 -122213560 - AluSx SINE Alu -1 311 1 9979 220 35 30 chrX 40386370 40387503 -122212427 - L1M3 LINE L1 -3960 3183 2058 278 256 16 31 chrX 40387601 40387730 -122212200 - L1M3 LINE L1 -6903 127 1 566 224 14 0 chrX 40387785 40387928 -122212002 - L1MD2 LINE L1 -13 6346 6202 2255 101 0 0 chrX 40387952 40388239 -122211691 + AluSg SINE Alu 1 287 -23 806 181 62 39 chrX 40388748 40389008 -122210922 - MER20B DNA MER1_type -3 780 515 1078 285 133 6 chrX 40389110 40389576 -122210354 - MER20B DNA MER1_type -256 527 3 744 331 167 34 chrX 40389798 40390300 -122209630 - L2 LINE L2 -359 2955 2387 2210 130 0 0 chrX 40390427 40390734 -122209196 + AluSx SINE Alu 1 307 -5 566 301 83 5 chrX 40392731 40392947 -122206983 - MIR SINE MIR -15 247 15 399 292 19 32 chrX 40393539 40393755 -122206175 - L1MEd LINE L1 -4923 1196 984 * 1187 115 5 55 chrX 40393754 40393971 -122205959 + L1P5 LINE L1 5521 5726 -428 277 318 38 15 chrX 40393963 40394095 -122205835 - L1MEd LINE L1 -5422 697 563 * 303 340 30 0 chrX 40394361 40394461 -122205469 - L1MEd LINE L1 -5928 191 89 6145 95 6 7 chrX 40395032 40396215 -122203715 + L1PB1 LINE L1 4991 6172 0 29 78 0 0 chrX 40396338 40396402 -122203528 + AT_rich Low_complexity Low_complexity 1 64 0 260 298 84 8 chrX 40396835 40396966 -122202964 + L2 LINE L2 1281 1421 -1893 462 194 0 11 chrX 40397044 40397137 -122202793 - L1MC5 LINE L1 -60 7901 7810 2403 136 84 16 chrX 40397207 40397635 -122202295 - MSTB2 LTR MaLR 0 457 1 26 0 0 0 chrX 40397762 40397788 -122202142 + AT_rich Low_complexity Low_complexity 1 26 0 607 295 102 57 chrX 40397816 40398304 -122201626 + L2 LINE L2 1713 2222 -1092 357 314 92 7 chrX 40399268 40399421 -122200509 - MIR SINE MIR -93 169 4 1861 155 10 33 chrX 40399457 40399760 -122200170 - AluJb SINE Alu -7 305 10 835 189 127 50 chrX 40399912 40400172 -122199758 - MLT1G LTR MaLR 0 590 311 350 125 12 0 chrX 40400182 40400262 -122199668 + (TC)n Simple_repeat Simple_repeat 1 81 0 294 188 114 100 chrX 40400285 40400435 -122199495 - MLT1F1 LTR MaLR -365 225 72 311 276 103 0 chrX 40400679 40400766 -122199164 + L2 LINE L2 3208 3303 -10 848 253 112 23 chrX 40401024 40401494 -122198436 + MLT1G1 LTR MaLR 10 546 -9 391 362 9 0 chrX 40401766 40401882 -122198048 + MER5A DNA MER1_type 69 185 -4 3303 104 10 0 chrX 40401911 40402413 -122197517 + L1PA16 LINE L1 5467 5973 -193 698 222 45 17 chrX 40404268 40404444 -122195486 + MIR SINE MIR 79 259 -3 273 244 33 67 chrX 40404608 40404698 -122195232 + L2 LINE L2 3225 3311 -2 794 147 28 0 chrX 40404875 40405018 -122194912 - L1MA9 LINE L1 -5 6307 6161 718 224 217 41 chrX 40406079 40406498 -122193432 - MLT1H LTR MaLR -3 546 12 455 324 22 32 chrX 40406574 40406759 -122193171 + MIR3 SINE MIR 3 185 -23 528 314 168 8 chrX 40407434 40407797 -122192133 + L2 LINE L2 1931 2351 -963 2543 295 58 11 chrX 40408076 40409183 -122190747 + ERVL LTR ERVL 4179 5396 -368 277 292 56 49 chrX 40409518 40409662 -122190268 + LTR33A LTR ERVL 7 151 -372 396 250 45 8 chrX 40409803 40409935 -122189995 + LTR33A LTR ERVL 331 467 -56 2569 130 23 30 chrX 40410183 40410620 -122189310 - Tigger2a DNA MER2_type 0 434 1 23 0 0 0 chrX 40410901 40410924 -122189006 + AT_rich Low_complexity Low_complexity 1 23 0 9274 188 57 7 chrX 40410928 40414929 -122185001 - L1MA2 LINE L1 0 7723 3380 5621 171 40 23 chrX 40414929 40416057 -122183873 - L1MA2 LINE L1 -6397 1168 22 4639 178 45 37 chrX 40416228 40417422 -122182508 - L1MD2 LINE L1 -3 6750 5546 * 28571 59 0 2 chrX 40417419 40423589 -122176341 - L1PA5 LINE L1 0 6154 1 10851 220 45 28 chrX 40423588 40423679 -122176251 - L1MD2 LINE L1 -978 5562 5474 * 1848 133 50 0 chrX 40423679 40423958 -122175972 + AluSg SINE Alu 1 293 -17 10851 220 45 28 chrX 40423958 40424494 -122175436 - L1MD2 LINE L1 -1066 5474 4949 1925 122 6 35 chrX 40424494 40424839 -122175091 - L1MA2 LINE L1 0 6304 5970 10851 220 45 28 chrX 40424839 40424956 -122174974 - L1MD2 LINE L1 -1591 4949 4835 243 61 0 0 chrX 40424956 40424989 -122174941 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2076 120 0 0 chrX 40424991 40425275 -122174655 - AluSq SINE Alu -29 284 1 10851 220 45 28 chrX 40425275 40425341 -122174589 - L1MD2 LINE L1 -1705 4835 4772 14640 125 18 27 chrX 40425341 40427780 -122172150 - Tigger1 DNA MER2_type 0 2418 1 10851 220 45 28 chrX 40427780 40430083 -122169847 - L1MD2 LINE L1 -1768 4772 2366 216 0 0 0 chrX 40430083 40430107 -122169823 + (TG)n Simple_repeat Simple_repeat 2 25 0 10851 220 45 28 chrX 40430107 40430611 -122169319 - L1MD2 LINE L1 -4174 2366 1872 926 204 87 0 chrX 40430615 40430854 -122169076 - L1MD2 LINE L1 -4538 1933 1572 2472 51 0 3 chrX 40431022 40431317 -122168613 - AluY SINE Alu -16 295 2 219 69 0 0 chrX 40431981 40432010 -122167920 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 363 296 81 58 chrX 40433024 40433812 -122166118 - L1M4 LINE L1 -957 5189 4384 248 216 0 0 chrX 40434017 40434068 -122165862 + L1ME4a LINE L1 5571 5621 -500 229 277 20 10 chrX 40434120 40434221 -122165709 + L1ME4a LINE L1 6004 6105 -16 522 220 28 0 chrX 40434336 40434445 -122165485 + MIR SINE MIR 36 147 -115 481 243 26 26 chrX 40435860 40436012 -122163918 + MIR SINE MIR 111 262 0 207 194 0 0 chrX 40436914 40436950 -122162980 + CT-rich Low_complexity Low_complexity 4 39 0 4480 119 118 93 chrX 40436989 40437569 -122162361 - L1MC3 LINE L1 0 7785 7221 285 295 51 0 chrX 40437569 40437647 -122162283 - MLT1F1 LTR MaLR -436 131 50 1731 93 24 0 chrX 40437656 40437904 -122162026 - L1PA11 LINE L1 -3 6171 5918 4480 119 118 93 chrX 40437904 40438290 -122161640 - L1MC3 LINE L1 -571 7214 6706 1370 182 30 30 chrX 40438299 40438568 -122161362 + AluJo SINE Alu 37 305 -7 7072 153 22 21 chrX 40438571 40439841 -122160089 - L1MC3 LINE L1 -1054 6731 5461 11752 201 19 12 chrX 40439846 40441479 -122158451 + L1PB1 LINE L1 1669 3306 -2840 2150 130 0 7 chrX 40441479 40441779 -122158151 + AluSq SINE Alu 1 298 -15 11752 201 19 12 chrX 40441779 40443171 -122156759 + L1PB1 LINE L1 3306 4687 -1459 5658 110 28 1 chrX 40443171 40444367 -122155563 + L1PB1 LINE L1 4928 6147 -4 1115 166 27 10 chrX 40444367 40444705 -122155225 - L1MC3 LINE L1 -743 5403 5127 5669 234 34 17 chrX 40444707 40445401 -122154529 - L1MC3 LINE L1 -1043 5103 4422 2261 96 7 7 chrX 40445401 40445703 -122154227 - AluSq SINE Alu -11 302 1 5669 234 34 17 chrX 40445703 40446586 -122153344 - L1MC3 LINE L1 -1724 4422 3499 1147 164 17 58 chrX 40446591 40446649 -122153281 - MER33 DNA MER1_type -2304 281 222 2205 133 0 0 chrX 40446649 40446958 -122152972 + AluSx SINE Alu 1 309 -3 1147 164 17 58 chrX 40446958 40447191 -122152739 - MER33 DNA MER1_type -2363 222 2 287 170 0 0 chrX 40447192 40447245 -122152685 + MER97c DNA MER1_type? 197 249 -841 208 250 0 0 chrX 40448047 40448095 -122151835 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 190 294 0 0 chrX 40448283 40448334 -122151596 - MIR SINE MIR -103 159 109 3029 128 14 50 chrX 40448412 40448975 -122150955 - L1MA10 LINE L1 -1 6333 5791 279 343 9 94 chrX 40449028 40449241 -122150689 + MIR SINE MIR 67 261 -1 511 274 139 30 chrX 40449473 40449674 -122150256 - MIR SINE MIR -35 227 5 21 0 0 0 chrX 40450357 40450378 -122149552 + AT_rich Low_complexity Low_complexity 1 21 0 379 309 60 39 chrX 40451400 40451633 -122148297 + L3 LINE CR1 680 917 -660 241 298 0 24 chrX 40451733 40451817 -122148113 + GA-rich Low_complexity Low_complexity 3 84 0 2161 116 0 0 chrX 40452180 40452483 -122147447 + AluY SINE Alu 1 303 -8 375 78 0 0 chrX 40452483 40452534 -122147396 + (GGGGA)n Simple_repeat Simple_repeat 2 52 0 2044 127 3 0 chrX 40452628 40452928 -122147002 + AluJb SINE Alu 3 303 -9 1677 180 0 14 chrX 40453047 40453342 -122146588 + AluJo SINE Alu 1 291 -21 476 175 79 0 chrX 40453748 40453862 -122146068 - MER103 DNA DNA -4 162 40 22 0 0 0 chrX 40454559 40454581 -122145349 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 40455431 40455452 -122144478 + AT_rich Low_complexity Low_complexity 1 21 0 1189 152 25 12 chrX 40455558 40455801 -122144129 - L1MB8 LINE L1 -9 6169 5924 418 259 9 4 chrX 40455853 40455964 -122143966 - L1P4 LINE L1 -394 5771 5657 193 299 61 76 chrX 40456262 40456459 -122143471 + MIR SINE MIR 23 216 -46 193 275 0 75 chrX 40456833 40456913 -122143017 - L2 LINE L2 -73 3240 3167 1642 172 81 47 chrX 40456961 40457099 -122142831 - LTR37A LTR ERV1 -6 420 288 504 86 0 0 chrX 40457099 40457169 -122142761 + (TA)n Simple_repeat Simple_repeat 2 71 0 1642 172 81 47 chrX 40457169 40457388 -122142542 - LTR37A LTR ERV1 -138 288 45 1175 204 0 5 chrX 40457388 40457609 -122142321 + MER58A DNA MER1_type 4 223 -1 1642 172 81 47 chrX 40457609 40457656 -122142274 - LTR37A LTR ERV1 -381 45 1 2133 123 128 10 chrX 40458709 40459092 -122140838 - MSTA LTR MaLR 0 428 1 383 273 83 25 chrX 40459469 40459590 -122140340 + MER5B DNA MER1_type 1 128 -50 1871 164 3 3 chrX 40459595 40459888 -122140042 - AluJo SINE Alu -19 293 1 1330 234 65 85 chrX 40459943 40460657 -122139273 - L1ME3A LINE L1 -48 6114 5455 3653 109 23 86 chrX 40460678 40461318 -122138612 - LTR26 LTR ERV1 -3 600 1 976 226 16 3 chrX 40461321 40461637 -122138293 - L1ME3A LINE L1 -718 5444 5127 1109 230 58 69 chrX 40462069 40462423 -122137507 - MER39 LTR ERV1 0 707 144 2832 207 2 53 chrX 40462423 40463007 -122136923 + MLT2B3 LTR ERVL 1 554 0 1109 230 58 69 chrX 40463007 40463150 -122136780 - MER39 LTR ERV1 -563 144 1 202 320 134 52 chrX 40463218 40463390 -122136540 - L2 LINE L2 -510 2804 2619 21 36 0 0 chrX 40463408 40463436 -122136494 + AT_rich Low_complexity Low_complexity 1 28 0 453 332 128 24 chrX 40463749 40464047 -122135883 - L2 LINE L2 -846 2468 2140 978 296 58 55 chrX 40464056 40464874 -122135056 - L1ME3A LINE L1 -1227 4919 4100 8147 198 43 31 chrX 40464876 40468192 -122131738 + L1MC1 LINE L1 886 4149 -2464 984 132 0 0 chrX 40468192 40468344 -122131586 + L1MA2 LINE L1 6153 6304 0 8147 198 43 31 chrX 40468344 40470833 -122129097 + L1MC1 LINE L1 4149 6608 -5 230 0 0 32 chrX 40471111 40471142 -122128788 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 40832 49 3 3 chrX 40471142 40473676 -122126254 - L1PA4 LINE L1 -16 6139 3606 2397 94 0 0 chrX 40473676 40473985 -122125945 - AluY SINE Alu -2 309 1 40832 49 3 3 chrX 40473985 40477550 -122122380 - L1PA4 LINE L1 -2549 3606 41 1958 190 226 4 chrX 40478845 40479376 -122120554 + MLT1E1 LTR MaLR 6 654 0 331 309 147 10 chrX 40479412 40479616 -122120314 - L1M4 LINE L1 -2406 5159 4928 2931 83 6 28 chrX 40479711 40480178 -122119752 - L1PA8 LINE L1 -895 5251 4795 7086 48 15 3 chrX 40480178 40481081 -122118849 + L1PA8 LINE L1 5254 6171 -1 411 205 177 76 chrX 40481195 40481444 -122118486 - L1M4 LINE L1 -2749 4816 4543 1464 248 165 55 chrX 40481483 40481502 -122118428 - HAL1 LINE L1 -1 2506 2490 252 59 0 0 chrX 40481502 40481536 -122118394 + (TG)n Simple_repeat Simple_repeat 1 34 0 1464 248 165 55 chrX 40481536 40482869 -122117061 - HAL1 LINE L1 -17 2490 1006 697 270 28 33 chrX 40482994 40483386 -122116544 - L1M4 LINE L1 -3096 4469 4080 3731 188 67 1 chrX 40483502 40484206 -122115724 - MER21B LTR ERV1 -113 750 1 350 324 128 25 chrX 40484208 40484489 -122115441 - L1M4 LINE L1 -3539 4026 3717 1909 131 20 18 chrX 40484491 40484834 -122115096 - L1MA2 LINE L1 0 6304 5961 5147 91 26 8 chrX 40484846 40485623 -122114307 - L1PA13 LINE L1 -3 6160 5370 949 159 19 0 chrX 40485624 40485781 -122114149 - LTR10D LTR ERV1 0 513 354 2900 249 83 53 chrX 40485786 40486112 -122113818 - L1M4 LINE L1 -6216 1349 1034 2067 149 79 30 chrX 40486112 40486541 -122113389 + LTR7 LTR ERV1 1 450 0 2900 249 83 53 chrX 40486541 40487507 -122112423 - L1M4 LINE L1 -6531 1034 19 22 0 0 0 chrX 40487886 40487908 -122112022 + AT_rich Low_complexity Low_complexity 1 22 0 1166 256 114 77 chrX 40487927 40489883 -122110047 - L1MC5 LINE L1 -673 7288 5265 352 304 77 24 chrX 40489918 40490241 -122109689 - L1MC5 LINE L1 -978 5168 4805 2130 139 0 0 chrX 40490241 40490542 -122109388 - AluSx SINE Alu -11 301 1 352 304 77 24 chrX 40490542 40490751 -122109179 - L1MC5 LINE L1 -1341 4805 4608 562 340 84 15 chrX 40491004 40491336 -122108594 - HAL1 LINE L1 -868 1639 1285 4862 104 22 16 chrX 40491341 40492129 -122107801 - L1PA16 LINE L1 -9 6157 5366 2537 216 10 2 chrX 40492131 40492734 -122107196 + L1 LINE L1 4084 4691 -1455 1594 181 3 20 chrX 40492743 40493036 -122106894 - AluJo SINE Alu -23 289 2 1202 145 0 0 chrX 40493334 40493506 -122106424 - AluJb SINE Alu -14 298 127 36171 85 5 10 chrX 40493655 40499831 -122100099 - L1PA6 LINE L1 0 6154 11 253 353 43 0 chrX 40500595 40500711 -122099219 - LTR67 LTR ERVL -336 221 101 2200 108 3 0 chrX 40501762 40502050 -122097880 - AluSc SINE Alu -20 289 1 1751 162 3 34 chrX 40502057 40502354 -122097576 - AluJo SINE Alu -20 292 5 25 0 0 0 chrX 40503149 40503174 -122096756 + AT_rich Low_complexity Low_complexity 1 25 0 2391 189 79 20 chrX 40503880 40504472 -122095458 - L1MD2 LINE L1 -311 6048 5422 2363 101 41 103 chrX 40504576 40505040 -122094890 - L1MC1 LINE L1 0 6333 5899 3847 150 32 10 chrX 40505040 40505918 -122094012 + L1MC1 LINE L1 5341 6053 -280 31191 101 8 53 chrX 40505929 40512374 -122087556 + L1PA7 LINE L1 12 6154 0 1256 145 27 8 chrX 40512370 40512828 -122087102 + L1MC2 LINE L1 5725 6343 -1 * 1844 208 66 43 chrX 40512828 40513361 -122086569 + L1ME1 LINE L1 5603 6147 -19 439 311 12 0 chrX 40513952 40514113 -122085817 + (CA)n Simple_repeat Simple_repeat 2 164 0 1428 142 0 9 chrX 40514197 40514409 -122085521 + AluJo SINE Alu 86 295 -17 228 164 73 36 chrX 40514445 40514500 -122085430 + L1MB5 LINE L1 5416 5472 -692 2698 159 26 48 chrX 40514501 40515066 -122084864 + L1MB5 LINE L1 5622 6174 0 970 196 58 4 chrX 40515069 40515309 -122084621 - L1MDa LINE L1 -4654 1886 1634 1528 151 72 7 chrX 40515311 40515615 -122084315 - L1MC3 LINE L1 -1 7784 7461 1353 201 115 42 chrX 40515776 40516039 -122083891 - L1MDa LINE L1 -4898 1642 1399 3431 67 11 39 chrX 40516039 40516440 -122083490 + MLT2A2 LTR ERVL 1 389 -64 267 54 0 0 chrX 40516440 40516477 -122083453 + (TG)n Simple_repeat Simple_repeat 2 38 0 3431 67 11 39 chrX 40516477 40516541 -122083389 + MLT2A2 LTR ERVL 389 453 0 1353 201 115 42 chrX 40516541 40516844 -122083086 - L1MDa LINE L1 -5141 1399 1035 622 264 47 99 chrX 40517641 40518065 -122081865 - L1MDa LINE L1 -6083 457 56 2085 229 52 6 chrX 40518098 40518749 -122081181 - L1M4 LINE L1 -3173 2973 2293 6570 77 4 40 chrX 40518750 40520405 -122079525 - L1PA13 LINE L1 -4 6159 4533 459 87 0 14 chrX 40520396 40520465 -122079465 - L1PA10 LINE L1 -6 6162 6095 * 11385 161 21 4 chrX 40520475 40522962 -122076968 - L1P4 LINE L1 -702 5781 3210 * 42769 51 3 3 chrX 40522961 40529109 -122070821 + L1PA4 LINE L1 1 6150 -5 10220 200 13 50 chrX 40529114 40530787 -122069143 - L1P4 LINE L1 -3241 3220 1492 2301 128 14 8 chrX 40530787 40531140 -122068790 - THE1A LTR MaLR 0 355 1 10220 200 13 50 chrX 40531140 40532576 -122067354 - L1P4 LINE L1 -4969 1492 4 * 16444 172 3 12 chrX 40532565 40535645 -122064285 - L1PA13 LINE L1 -1588 5209 2159 290 100 0 20 chrX 40535651 40535701 -122064229 + MADE1 DNA Mariner 1 49 -31 7395 218 151 7 chrX 40535701 40537370 -122062560 - L1PA13 LINE L1 -4878 1909 1 877 260 50 44 chrX 40537375 40537878 -122062052 - L1MEc LINE L1 -3984 3154 2649 1856 198 59 3 chrX 40537881 40538254 -122061676 + MER93a LTR ERV1 1 394 -8 619 248 14 38 chrX 40538326 40538536 -122061394 - L1MEc LINE L1 -5443 1416 1212 21 36 0 0 chrX 40538550 40538578 -122061352 + AT_rich Low_complexity Low_complexity 1 28 0 748 280 48 53 chrX 40538621 40539014 -122060916 - L1MEc LINE L1 -5668 1187 797 491 257 187 14 chrX 40539105 40539319 -122060611 - L1MEc LINE L1 -6598 261 11 356 304 146 13 chrX 40540339 40540497 -122059433 + MER5A DNA MER1_type 11 189 0 3094 173 53 53 chrX 40540664 40541404 -122058526 - L1MB7 LINE L1 -16 6666 5927 868 150 0 0 chrX 40541404 40541531 -122058399 - AluJb SINE Alu -185 127 1 2933 203 58 3 chrX 40541531 40542162 -122057768 - L1MB7 LINE L1 -735 5937 5261 724 80 18 0 chrX 40542162 40542275 -122057655 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 2933 203 58 3 chrX 40542275 40542418 -122057512 - L1MB7 LINE L1 -1411 5261 5127 * 3507 233 10 33 chrX 40542417 40543383 -122056547 - L1MB7 LINE L1 -1916 4728 3785 5996 225 50 41 chrX 40543419 40545109 -122054821 - L1MB7 LINE L1 -4833 1709 5 2120 106 3 0 chrX 40545990 40546310 -122053620 - AluSp SINE Alu 0 321 1 37 69 0 0 chrX 40546367 40546439 -122053491 + AT_rich Low_complexity Low_complexity 1 72 0 289 306 70 36 chrX 40546488 40546818 -122053112 - L1M4 LINE L1 -3161 2985 2636 980 263 26 46 chrX 40547053 40547419 -122052511 - MLT1I LTR MaLR -7 402 5 1667 198 24 18 chrX 40548903 40549241 -122050689 + MER58B DNA MER1_type 2 341 0 696 315 4 37 chrX 40549433 40549674 -122050256 + LTR16C LTR ERVL 36 268 -223 249 108 0 0 chrX 40549682 40549719 -122050211 + (T)n Simple_repeat Simple_repeat 1 37 0 784 263 33 19 chrX 40549719 40549932 -122049998 + LTR16C LTR ERVL 276 491 0 242 248 51 51 chrX 40550293 40550410 -122049520 + L3b LINE CR1 1288 1404 -179 252 308 29 39 chrX 40550444 40550548 -122049382 + MIR SINE MIR 23 125 -137 386 190 0 0 chrX 40550648 40550727 -122049203 - L1MA3 LINE L1 0 6305 6227 24 0 0 0 chrX 40551221 40551245 -122048685 + AT_rich Low_complexity Low_complexity 1 24 0 464 183 167 32 chrX 40551617 40551743 -122048187 - L2 LINE L2 -1 3312 3170 1242 270 98 29 chrX 40551883 40552499 -122047431 - L2 LINE L2 -178 3135 2476 2284 227 99 4 chrX 40552501 40553017 -122046913 - MER69 DNA AcHobo -661 565 1 443 272 201 21 chrX 40553026 40553305 -122046625 - L2 LINE L2 -1206 2108 1780 3252 50 21 5 chrX 40553503 40553925 -122046005 + L1PA8 LINE L1 5741 6169 -3 2339 135 3 13 chrX 40554713 40555090 -122044840 - L1PB4 LINE L1 -3 6153 5781 419 215 8 0 chrX 40555090 40555211 -122044719 + (TA)n Simple_repeat Simple_repeat 2 123 0 288 111 0 111 chrX 40555211 40555274 -122044656 - L1M3 LINE L1 -364 5792 5741 261 350 158 19 chrX 40555490 40555750 -122044180 + L2 LINE L2 2928 3223 -49 342 305 102 0 chrX 40555924 40556042 -122043888 - L2 LINE L2 0 3313 3184 1094 276 147 25 chrX 40556201 40556909 -122043021 - L2 LINE L2 -144 3169 2366 482 262 138 0 chrX 40556947 40557092 -122042838 - L2 LINE L2 -1633 1681 1517 385 293 26 69 chrX 40557417 40557533 -122042397 - MIR SINE MIR -64 144 34 200 216 0 0 chrX 40557970 40558007 -122041923 + CT-rich Low_complexity Low_complexity 3 39 0 225 94 0 0 chrX 40558434 40558466 -122041464 + (GGAGA)n Simple_repeat Simple_repeat 3 34 0 6277 158 68 41 chrX 40558572 40559903 -122040027 - Charlie1a DNA MER1_type -2 1453 88 13960 123 14 1 chrX 40559931 40561997 -122037933 + Tigger1 DNA MER2_type 2 2093 -325 7720 136 8 7 chrX 40561998 40564334 -122035596 + L1MA1 LINE L1 3958 6298 -4 2182 125 20 15 chrX 40564344 40564687 -122035243 + Tigger1 DNA MER2_type 2073 2417 -1 30 59 0 0 chrX 40564829 40564880 -122035050 + AT_rich Low_complexity Low_complexity 1 51 0 3757 227 61 27 chrX 40564907 40565530 -122034400 - L1MD1 LINE L1 0 6636 6035 1734 181 0 26 chrX 40565530 40565840 -122034090 - AluJo SINE Alu -10 302 1 3757 227 61 27 chrX 40565840 40566033 -122033897 - L1MD1 LINE L1 -601 6035 5850 475 32 0 0 chrX 40566033 40566095 -122033835 + L1PA2 LINE L1 6090 6151 -4 3757 227 61 27 chrX 40566095 40566128 -122033802 - L1MD1 LINE L1 -786 5850 5820 189 0 0 0 chrX 40566128 40566149 -122033781 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3757 227 61 27 chrX 40566149 40566396 -122033534 - L1MD1 LINE L1 -816 5820 5583 243 0 0 0 chrX 40566396 40566423 -122033507 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3757 227 61 27 chrX 40566423 40568985 -122030945 - L1MD1 LINE L1 -1053 5583 2654 1197 246 72 25 chrX 40568985 40569346 -122030584 - MLT1C LTR MaLR -2 465 88 4325 213 83 74 chrX 40569349 40570662 -122029268 - L1MD1 LINE L1 -3875 2665 1365 2442 90 3 0 chrX 40570662 40570974 -122028956 - AluSq SINE Alu 0 313 1 4325 213 83 74 chrX 40570974 40571268 -122028662 - L1MD1 LINE L1 -5175 1365 1075 1832 167 3 10 chrX 40571268 40571567 -122028363 + AluJo SINE Alu 1 297 -15 4325 213 83 74 chrX 40571567 40572545 -122027385 - L1MD1 LINE L1 -5465 1075 76 938 204 36 14 chrX 40572701 40572922 -122027008 - L1ME3A LINE L1 -8 6162 5937 328 212 40 20 chrX 40572941 40573040 -122026890 - L1ME3A LINE L1 -328 5842 5742 246 89 71 54 chrX 40573045 40573101 -122026829 - MLT2B2 LTR ERVL 0 515 459 1004 254 92 64 chrX 40573142 40573643 -122026287 - MLT2B3 LTR ERVL -39 515 1 1174 259 33 35 chrX 40573643 40574303 -122025627 - L1ME3A LINE L1 -429 5741 5084 742 196 159 0 chrX 40576481 40576644 -122023286 + MER5A DNA MER1_type 1 189 0 237 376 39 0 chrX 40576737 40576853 -122023077 + MIR SINE MIR 14 143 -68 1080 274 84 23 chrX 40578361 40578918 -122021012 - L1MC4a LINE L1 -127 5994 5402 2223 107 0 0 chrX 40579201 40579509 -122020421 + AluSx SINE Alu 1 308 -4 210 37 0 0 chrX 40579626 40579653 -122020277 + (CAA)n Simple_repeat Simple_repeat 1 27 0 414 69 0 0 chrX 40580307 40580365 -122019565 + (CA)n Simple_repeat Simple_repeat 1 58 0 2119 188 14 2 chrX 40581344 40581758 -122018172 - MER63B DNA MER1_type -13 423 5 3974 289 59 18 chrX 40581998 40583550 -122016380 - HERV16 LTR ERVL -1905 3091 1646 1166 248 44 16 chrX 40583937 40584599 -122015331 - HERV16 LTR ERVL -3859 1137 346 926 235 52 0 chrX 40584624 40584854 -122015076 - HERV16 LTR ERVL -4754 242 1 1296 282 78 24 chrX 40584854 40585265 -122014665 - LTR16A LTR ERVL 0 450 18 227 316 0 0 chrX 40585397 40585454 -122014476 - Tigger7 DNA MER2_type -260 79 23 * 294 211 14 0 chrX 40585450 40585521 -122014409 - MER116 DNA Mariner -8 72 1 582 128 0 0 chrX 40585690 40585776 -122014154 + AluSg/x SINE Alu 216 301 -11 446 299 103 17 chrX 40586518 40586635 -122013295 + L2 LINE L2 3137 3263 -9 255 79 0 0 chrX 40587251 40587289 -122012641 + (TG)n Simple_repeat Simple_repeat 2 39 0 986 223 193 3 chrX 40587401 40587701 -122012229 - MLT1G1 LTR MaLR -6 589 233 2121 94 21 3 chrX 40587873 40588160 -122011770 + AluSc SINE Alu 1 292 -17 309 280 10 0 chrX 40588244 40588404 -122011526 + (TG)n Simple_repeat Simple_repeat 1 161 0 2374 81 0 0 chrX 40588456 40588751 -122011179 - AluSc SINE Alu -14 295 1 3247 231 41 24 chrX 40589298 40589551 -122010379 - L1ME1 LINE L1 -19 6147 5900 2185 115 30 33 chrX 40589551 40589916 -122010014 - THE1B LTR MaLR 0 364 1 12087 81 2 7 chrX 40589916 40591503 -122008427 - THE1B-int LTR MaLR 0 1580 1 2136 130 19 35 chrX 40591503 40591873 -122008057 - THE1B LTR MaLR 0 364 1 3247 231 41 24 chrX 40591873 40592619 -122007311 - L1ME1 LINE L1 -265 5901 5129 33 0 0 0 chrX 40592619 40592652 -122007278 + AT_rich Low_complexity Low_complexity 1 33 0 14642 207 8 14 chrX 40592652 40597428 -122002502 - L1PB1 LINE L1 0 6867 2048 4520 122 39 0 chrX 40598465 40599602 -122000328 - L1PB1 LINE L1 -4814 2049 634 1120 157 5 0 chrX 40599602 40599799 -122000131 - L1PB1 LINE L1 -6663 200 3 1995 226 87 4 chrX 40599808 40600488 -121999442 - L1M4 LINE L1 -1011 5135 4400 1505 101 18 0 chrX 40600496 40600724 -121999206 - L1MA6 LINE L1 0 6300 6069 2526 117 9 41 chrX 40600725 40601067 -121998863 + L1MA6 LINE L1 5625 5952 -348 2155 113 7 0 chrX 40601067 40601360 -121998570 + AluSq SINE Alu 1 295 -18 2526 117 9 41 chrX 40601360 40601454 -121998476 + L1MA6 LINE L1 5952 6047 -253 236 291 10 0 chrX 40601504 40601607 -121998323 - L1M4 LINE L1 -1786 4360 4257 335 299 48 21 chrX 40601672 40602072 -121997858 - L1MDa LINE L1 -4436 1693 1330 411 279 103 20 chrX 40602123 40602424 -121997506 - L1MDa LINE L1 -4887 1232 907 444 382 27 35 chrX 40602445 40602819 -121997111 - L1MDa LINE L1 -5212 907 537 324 315 88 42 chrX 40603012 40603228 -121996702 - L1MDa LINE L1 -5887 232 7 23 54 0 0 chrX 40604213 40604250 -121995680 + AT_rich Low_complexity Low_complexity 1 37 0 350 288 24 0 chrX 40604492 40604617 -121995313 + MER103 DNA DNA 11 138 -28 420 267 76 9 chrX 40604822 40604927 -121995003 - MIR SINE MIR -134 128 17 308 281 37 0 chrX 40605761 40605843 -121994087 - L2 LINE L2 0 3313 3229 3518 63 2 2 chrX 40605843 40606305 -121993625 + HERV17 LTR ERV1 3293 3754 -4872 * 14021 45 1 0 chrX 40606284 40608026 -121991904 + HERV17 LTR ERV1 5405 7147 -1479 304 26 0 0 chrX 40608022 40608061 -121991869 + HERV17 LTR ERV1 7510 7548 -1078 * 2104 60 3 27 chrX 40608051 40608350 -121991580 + HERV17 LTR ERV1 8335 8626 0 2125 100 3 12 chrX 40608350 40608679 -121991251 + LTR17 LTR ERV1 1 326 -454 217 238 159 0 chrX 40608692 40608755 -121991175 - L2 LINE L2 -61 3252 3180 789 299 100 0 chrX 40608981 40609262 -121990668 - L2 LINE L2 -182 3131 2823 635 194 9 0 chrX 40609514 40609729 -121990201 + CT-rich Low_complexity Low_complexity 1 216 0 820 163 7 0 chrX 40609732 40609900 -121990030 - FRAM SINE Alu 0 176 35 616 266 21 31 chrX 40610317 40610509 -121989421 + L2 LINE L2 2679 2868 -446 1112 291 71 3 chrX 40610552 40610944 -121988986 - LTR16A LTR ERVL 0 450 32 2112 122 72 76 chrX 40610944 40611404 -121988526 + MLT1C LTR MaLR 1 458 -9 215 271 120 90 chrX 40611593 40611726 -121988204 + L2 LINE L2 3136 3272 0 268 296 31 41 chrX 40612264 40612362 -121987568 + MIR SINE MIR 34 130 -132 294 186 0 51 chrX 40612793 40612852 -121987078 + L2 LINE L2 3201 3256 -16 1503 282 67 14 chrX 40612951 40613458 -121986472 + L1ME1 LINE L1 36 569 -5827 2145 153 20 112 chrX 40613462 40614006 -121985924 + MLT1D LTR MaLR 2 495 -10 264 203 243 10 chrX 40614125 40614215 -121985715 + L1ME1 LINE L1 4349 4417 -1798 2285 105 3 0 chrX 40614215 40614511 -121985419 + AluSq SINE Alu 1 297 -16 264 203 243 10 chrX 40614511 40614622 -121985308 + L1ME1 LINE L1 4417 4597 -1618 1101 195 22 19 chrX 40614633 40614657 -121985273 + L1ME1 LINE L1 5355 5377 -854 1737 153 27 27 chrX 40614657 40614958 -121984972 + AluJo SINE Alu 1 301 -11 1101 195 22 19 chrX 40614958 40615201 -121984729 + L1ME1 LINE L1 5377 5622 -609 257 193 0 0 chrX 40615204 40615261 -121984669 + LTR28 LTR ERV1 1 57 -963 * 2239 146 54 0 chrX 40615233 40615623 -121984307 + MER61C LTR ERV1 14 424 -10 2159 212 30 43 chrX 40615635 40616258 -121983672 + L1ME1 LINE L1 5620 6234 -1 620 297 83 32 chrX 40616289 40617152 -121982778 + L1MC4a LINE L1 4368 5274 -872 23 68 0 0 chrX 40617214 40617258 -121982672 + AT_rich Low_complexity Low_complexity 1 44 0 2422 73 0 3 chrX 40617258 40617558 -121982372 + AluY SINE Alu 1 299 -12 1081 148 0 0 chrX 40617558 40617729 -121982201 + AluSg/x SINE Alu 134 304 0 375 105 0 0 chrX 40617812 40617869 -121982061 + (TG)n Simple_repeat Simple_repeat 2 58 0 8069 202 44 59 chrX 40617873 40620308 -121979622 + L1MC4a LINE L1 5365 7985 -3 378 0 0 0 chrX 40620319 40620361 -121979569 + (TG)n Simple_repeat Simple_repeat 2 43 0 2318 89 0 0 chrX 40620967 40621258 -121978672 + AluSx SINE Alu 16 306 -6 2303 109 0 0 chrX 40621627 40621929 -121978001 + AluSq SINE Alu 1 302 -11 852 212 10 25 chrX 40622636 40622834 -121977096 - LTR16A LTR ERVL -13 437 243 3696 182 88 11 chrX 40622886 40623668 -121976262 + MER21B LTR ERV1 1 842 -21 342 300 0 33 chrX 40625797 40625917 -121974013 - MARNA DNA Mariner -410 176 61 568 182 38 23 chrX 40625929 40626061 -121973869 + MER94 DNA DNA 1 134 0 1450 264 58 10 chrX 40626452 40626865 -121973065 + LTR16A LTR ERVL 18 450 0 313 291 78 0 chrX 40627180 40627283 -121972647 + L2 LINE L2 3162 3272 0 2386 94 3 3 chrX 40629796 40630105 -121969825 - AluSx SINE Alu -3 309 1 241 235 0 0 chrX 40630245 40630313 -121969617 - L1MB7 LINE L1 0 6682 6615 200 143 29 0 chrX 40630321 40630356 -121969574 + (TA)n Simple_repeat Simple_repeat 2 37 0 879 192 19 0 chrX 40630361 40630560 -121969370 - AluJo SINE Alu 0 324 123 3787 178 35 3 chrX 40630560 40631339 -121968591 - L1MB7 LINE L1 -91 6591 5788 512 110 0 0 chrX 40631340 40631413 -121968517 - AluSc SINE Alu -8 301 229 258 81 0 0 chrX 40631440 40631477 -121968453 + (TA)n Simple_repeat Simple_repeat 1 37 0 2253 105 3 13 chrX 40631477 40631783 -121968147 - AluY SINE Alu -8 303 1 2446 70 0 0 chrX 40631802 40632101 -121967829 - AluY SINE Alu -12 299 1 886 371 0 0 chrX 40632101 40632343 -121967587 - L1MB7 LINE L1 -1904 4740 4826 2944 108 2 21 chrX 40632343 40632411 -121967519 - MSTA LTR MaLR 0 428 360 2179 97 4 0 chrX 40632411 40632718 -121967212 + AluSg SINE Alu 1 308 0 2944 108 2 21 chrX 40632718 40633081 -121966849 - MSTA LTR MaLR -68 360 2 886 371 0 0 chrX 40633081 40633129 -121966801 - L1MB7 LINE L1 -1817 4827 4473 393 222 0 50 chrX 40633136 40633162 -121966768 + MER21B LTR ERV1 1 27 -836 423 0 0 0 chrX 40633162 40633209 -121966721 + (CA)n Simple_repeat Simple_repeat 2 48 0 393 222 0 50 chrX 40633209 40633281 -121966649 + MER21B LTR ERV1 27 94 -769 * 4178 189 21 14 chrX 40633279 40633739 -121966191 + MER21B LTR ERV1 43 513 -350 2357 75 0 37 chrX 40633739 40634060 -121965870 - AluSq SINE Alu -4 309 1 4178 189 21 14 chrX 40634060 40634408 -121965522 + MER21B LTR ERV1 513 857 -6 3564 261 17 2 chrX 40634421 40635589 -121964341 - L1MB7 LINE L1 -2166 4478 3293 299 326 34 7 chrX 40635679 40635826 -121964104 - L1MB7 LINE L1 -6027 519 369 295 271 12 65 chrX 40635865 40635956 -121963974 - L1MB7 LINE L1 -6359 183 104 1939 77 106 0 chrX 40635956 40636230 -121963700 - AluSg1 SINE Alu -6 303 1 295 271 12 65 chrX 40636230 40636308 -121963622 - L1MB7 LINE L1 -6438 104 23 403 283 184 42 chrX 40636496 40636708 -121963222 - MIR SINE MIR 0 262 21 342 248 0 7 chrX 40637172 40637284 -121962646 - MER91A DNA MER1_type -1 189 1 247 389 62 0 chrX 40637289 40637402 -121962528 + L2 LINE L2 3153 3272 0 365 176 27 14 chrX 40638004 40638078 -121961852 - L2 LINE L2 -4 3309 3235 327 349 0 0 chrX 40638136 40638219 -121961711 + L2 LINE L2 3185 3267 -5 324 263 0 32 chrX 40638531 40638626 -121961304 - L1MC4 LINE L1 -1339 6703 6612 309 158 37 0 chrX 40638629 40638711 -121961219 + (TA)n Simple_repeat Simple_repeat 2 86 0 2163 239 56 18 chrX 40638755 40639324 -121960606 + MLT1E LTR MaLR 3 593 0 6202 241 60 30 chrX 40639579 40640899 -121959031 + L1ME1 LINE L1 34 1313 -4902 2209 117 0 10 chrX 40640899 40641207 -121958723 + AluSx SINE Alu 1 305 -7 6202 241 60 30 chrX 40641207 40642080 -121957850 + L1ME1 LINE L1 1313 2158 -4057 1969 150 35 0 chrX 40642080 40642367 -121957563 + AluSx SINE Alu 1 297 -15 6202 241 60 30 chrX 40642367 40642650 -121957280 + L1ME1 LINE L1 2158 2431 -3784 3887 72 14 2 chrX 40642650 40643149 -121956781 + L1PA14 LINE L1 5639 6161 0 6202 241 60 30 chrX 40643149 40643585 -121956345 + L1ME1 LINE L1 2431 2853 -3362 2399 102 0 0 chrX 40643585 40643890 -121956040 - AluSx SINE Alu -7 305 1 6202 241 60 30 chrX 40643890 40644559 -121955371 + L1ME1 LINE L1 2853 3752 -2463 1926 164 15 50 chrX 40644559 40644962 -121954968 + MLT1B LTR MaLR 1 389 -1 6202 241 60 30 chrX 40644962 40645052 -121954878 + L1ME1 LINE L1 3752 3838 -2377 2850 154 42 20 chrX 40645081 40645908 -121954022 - MER54A LTR ERVL 0 644 1 569 223 69 0 chrX 40645909 40646084 -121953846 + L1ME1 LINE L1 3855 4041 -2174 * 2337 196 79 36 chrX 40646081 40646935 -121952995 + L1ME1 LINE L1 5163 6050 -185 525 146 91 9 chrX 40646936 40647046 -121952884 + L1MA10 LINE L1 6209 6327 -7 316 297 90 0 chrX 40647527 40647638 -121952292 - MIR SINE MIR -63 199 79 304 328 45 22 chrX 40647716 40647786 -121952144 - MIR SINE MIR -21 241 174 2077 92 0 34 chrX 40647786 40647931 -121951999 + AluSx SINE Alu 1 149 -161 315 0 0 0 chrX 40647931 40647966 -121951964 + (TA)n Simple_repeat Simple_repeat 1 35 0 2077 92 0 34 chrX 40647966 40648140 -121951790 + AluSx SINE Alu 149 310 0 304 328 45 22 chrX 40648140 40648202 -121951728 - MIR SINE MIR -88 174 105 250 80 40 0 chrX 40648525 40648575 -121951355 + T-rich Low_complexity Low_complexity 1 52 0 1194 159 4 62 chrX 40649026 40649252 -121950678 - AluJo SINE Alu -13 299 87 363 322 17 9 chrX 40649274 40649389 -121950541 - MIR SINE MIR -114 148 33 554 286 101 0 chrX 40649899 40650067 -121949863 - MIR SINE MIR -49 213 29 710 239 211 7 chrX 40650080 40650364 -121949566 + LTR33 LTR ERVL 180 521 0 283 253 11 58 chrX 40650364 40650451 -121949479 - MIR SINE MIR -177 85 3 208 259 0 37 chrX 40650507 40650561 -121949369 - L2 LINE L2 0 3272 3221 206 264 64 79 chrX 40650573 40650713 -121949217 + MIR SINE MIR 94 231 -31 6429 118 26 15 chrX 40650734 40651725 -121948205 + L1MA4A LINE L1 4559 5584 -719 2186 112 6 16 chrX 40651725 40652038 -121947892 + AluSx SINE Alu 3 312 0 6429 118 26 15 chrX 40652038 40652754 -121947176 + L1MA4A LINE L1 5584 6290 -13 2602 39 0 16 chrX 40652898 40653210 -121946720 + AluY SINE Alu 1 307 -4 300 143 0 0 chrX 40653251 40653307 -121946623 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 1585 163 41 58 chrX 40653523 40653818 -121946112 + AluJo SINE Alu 3 292 -20 300 281 66 54 chrX 40654200 40654367 -121945563 + MIR SINE MIR 35 203 -59 2591 55 0 3 chrX 40654451 40654763 -121945167 - AluY SINE Alu 0 311 1 414 218 15 12 chrX 40655300 40656057 -121943873 - L1MD2 LINE L1 -3 7798 6149 * 1376 190 95 3 chrX 40656056 40656446 -121943484 + L1M4 LINE L1 2528 2953 -3193 11355 106 62 139 chrX 40656446 40656642 -121943288 + Tigger1 DNA MER2_type 1 211 -2207 210 37 0 0 chrX 40656642 40656669 -121943261 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 11355 106 62 139 chrX 40656669 40658134 -121941796 + Tigger1 DNA MER2_type 211 1787 -631 2227 121 0 0 chrX 40658134 40658441 -121941489 + AluSc SINE Alu 1 307 -2 11355 106 62 139 chrX 40658441 40659066 -121940864 + Tigger1 DNA MER2_type 1787 2063 -355 2207 136 0 0 chrX 40659066 40659376 -121940554 + AluSx SINE Alu 1 310 -2 11355 106 62 139 chrX 40659376 40659707 -121940223 + Tigger1 DNA MER2_type 2063 2418 0 3367 224 36 30 chrX 40659717 40659799 -121940131 + L1M4 LINE L1 2962 3042 -3104 2182 123 3 13 chrX 40659799 40660108 -121939822 + AluSx SINE Alu 1 306 -6 3367 224 36 30 chrX 40660108 40660637 -121939293 + L1M4 LINE L1 3042 3567 -2579 311 0 26 0 chrX 40660637 40660676 -121939254 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2282 74 11 0 chrX 40660680 40660965 -121938965 - AluSp SINE Alu -25 288 1 3367 224 36 30 chrX 40660965 40661466 -121938464 + L1M4 LINE L1 3569 4086 -2060 706 184 29 29 chrX 40661465 40661570 -121938360 + L1M4 LINE L1 5094 5201 -945 * 2503 87 0 0 chrX 40661570 40661879 -121938051 + AluSg SINE Alu 1 309 -1 706 184 29 29 chrX 40661879 40661980 -121937950 + L1M4 LINE L1 5200 5300 -846 1693 259 73 26 chrX 40661980 40662904 -121937026 - L1MCc LINE L1 -4505 2520 1307 5066 91 15 1 chrX 40662904 40663583 -121936347 - LTR12 LTR ERV1 0 688 1 1693 259 73 26 chrX 40663583 40664097 -121935833 - L1MCc LINE L1 -5718 1307 818 2890 77 0 3 chrX 40664170 40664546 -121935384 + THE1C LTR MaLR 1 375 0 317 263 170 24 chrX 40664772 40665061 -121934869 - L1MCc LINE L1 -6059 364 34 386 264 208 8 chrX 40665654 40665779 -121934151 - MER5B DNA MER1_type -2 176 27 284 289 0 40 chrX 40665728 40665804 -121934126 + MER5A DNA MER1_type 114 186 -3 * 1611 220 141 17 chrX 40666060 40666542 -121933388 + MLT1F LTR MaLR 1 542 0 2948 20 6 0 chrX 40667011 40667357 -121932573 + L1PA4 LINE L1 5806 6153 -2 839 291 62 34 chrX 40667675 40668177 -121931753 + LTR33 LTR ERVL 5 520 -1 261 0 0 0 chrX 40668184 40668213 -121931717 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1725 293 103 27 chrX 40668213 40668982 -121930948 - L2 LINE L2 -9 3304 2456 1275 181 9 0 chrX 40668982 40669203 -121930727 + MER58A DNA MER1_type 1 223 -1 1725 293 103 27 chrX 40669203 40669451 -121930479 - L2 LINE L2 -857 2456 2228 761 173 24 0 chrX 40669452 40669579 -121930351 + FLAM_A SINE Alu 1 130 -3 2258 177 2 2 chrX 40669631 40670044 -121929886 - MER119 DNA MER1_type 0 583 171 1980 143 3 0 chrX 40670063 40670349 -121929581 + AluJo SINE Alu 15 301 -11 242 138 0 121 chrX 40670351 40670409 -121929521 - MER119 DNA MER1_type -406 177 127 2438 94 129 43 chrX 40671200 40671552 -121928378 + MSTA LTR MaLR 1 392 -36 2277 115 7 0 chrX 40671552 40671856 -121928074 - AluSq SINE Alu -7 306 1 2438 94 129 43 chrX 40671856 40671897 -121928033 + MSTA LTR MaLR 392 428 0 384 22 0 0 chrX 40672349 40672394 -121927536 + (CA)n Simple_repeat Simple_repeat 2 46 0 217 268 28 14 chrX 40672843 40672914 -121927016 + GA-rich Low_complexity Low_complexity 4 75 0 4652 100 9 2 chrX 40673625 40674255 -121925675 - LTR24C LTR ERV1 0 635 1 224 271 0 33 chrX 40675047 40675139 -121924791 + GA-rich Low_complexity Low_complexity 1 88 0 476 191 0 12 chrX 40676059 40676141 -121923789 + LTR56 LTR ERV1 25 105 -340 2310 175 19 86 chrX 40676141 40676641 -121923289 - LTR8 LTR ERV1 0 691 228 3101 170 98 50 chrX 40676641 40677335 -121922595 - LTR8A LTR ERV1 0 727 1 2310 175 19 86 chrX 40677335 40677371 -121922559 - LTR8 LTR ERV1 -463 228 191 3630 110 79 22 chrX 40677371 40677954 -121921976 + MER41B LTR ERV1 1 616 -19 2845 171 27 63 chrX 40677954 40678589 -121921341 + LTR9 LTR ERV1 2 612 0 913 193 39 6 chrX 40678610 40678791 -121921139 - LTR8 LTR ERV1 -495 196 10 321 169 70 104 chrX 40678866 40679058 -121920872 + LTR23 LTR ERV1 249 439 -6 312 130 0 0 chrX 40679078 40679124 -121920806 - Alu SINE Alu -256 46 1 * 344 98 82 16 chrX 40679124 40679177 -121920753 + LTR23 LTR ERV1 381 437 0 359 193 0 0 chrX 40680135 40680192 -121919738 - MER2 DNA MER2_type -288 57 1 473 212 267 79 chrX 40680400 40680718 -121919212 - LTR16A1 LTR ERVL -7 450 49 6861 48 0 13 chrX 40680718 40681508 -121918422 - LTR17 LTR ERV1 0 780 1 473 212 267 79 chrX 40681508 40681567 -121918363 - LTR16A1 LTR ERVL -408 49 2 890 203 43 6 chrX 40681586 40681749 -121918181 - MER58A DNA MER1_type -14 210 42 2740 204 68 72 chrX 40681910 40682740 -121917190 - LTR1B LTR ERV1 0 826 1 432 262 10 0 chrX 40683304 40683407 -121916523 - L2 LINE L2 -13 3300 3197 2518 69 0 3 chrX 40683511 40683815 -121916115 + AluSp SINE Alu 1 303 -10 380 277 99 29 chrX 40683820 40684062 -121915868 + L2 LINE L2 1791 2049 -1265 34 72 0 0 chrX 40684108 40684177 -121915753 + AT_rich Low_complexity Low_complexity 1 69 0 458 270 103 64 chrX 40684798 40685157 -121914773 - L1M4 LINE L1 -831 5315 4943 348 284 131 55 chrX 40685317 40685553 -121914377 + L1ME LINE L1 5313 5566 -555 471 275 43 24 chrX 40685556 40685767 -121914163 + L1ME LINE L1 5598 5812 -309 2007 137 3 3 chrX 40685767 40686060 -121913870 - AluSp SINE Alu -18 295 3 199 262 60 24 chrX 40686141 40686225 -121913705 + L3 LINE CR1 327 413 -1164 890 292 159 23 chrX 40686482 40686955 -121912975 + L3 LINE CR1 403 939 -638 226 241 17 0 chrX 40687322 40687380 -121912550 - MIR SINE MIR -70 192 134 184 231 26 0 chrX 40687422 40687461 -121912469 + L3 LINE CR1 1395 1434 -143 188 150 50 0 chrX 40687492 40687532 -121912398 + MIR3 SINE MIR 166 207 -1 352 290 72 57 chrX 40687917 40688110 -121911820 - MIR SINE MIR -56 206 11 1682 262 78 15 chrX 40689537 40689999 -121909931 + LTR16C LTR ERVL 1 491 0 2370 91 0 7 chrX 40690223 40690531 -121909399 + AluSg SINE Alu 1 306 -4 2619 215 15 71 chrX 40690756 40691083 -121908847 + L1M4 LINE L1 4 271 -6271 2153 95 0 70 chrX 40691083 40691398 -121908532 + AluSg SINE Alu 1 293 -17 2619 215 15 71 chrX 40691398 40691786 -121908144 + L1M4 LINE L1 271 679 -5863 1591 200 11 7 chrX 40691818 40692103 -121907827 + L1M4 LINE L1 668 953 -5589 1142 195 6 88 chrX 40692104 40692164 -121907766 + L1M4 LINE L1 4193 4256 -2388 2159 120 16 0 chrX 40692164 40692472 -121907458 + AluSq SINE Alu 1 313 0 1142 195 6 88 chrX 40692472 40692729 -121907201 + L1M4 LINE L1 4256 4484 -2160 1725 162 196 40 chrX 40692736 40693210 -121906720 + LTR10A LTR ERV1 1 548 -61 1871 204 27 2 chrX 40693224 40693630 -121906300 + L1M4 LINE L1 4493 4908 -1736 222 244 0 24 chrX 40693656 40693738 -121906192 + A-rich Low_complexity Low_complexity 2 81 0 450 0 0 0 chrX 40693780 40693830 -121906100 + (TCTCCC)n Simple_repeat Simple_repeat 6 55 0 8033 24 8 310 chrX 40693834 40695766 -121904164 + SVA Other Other 38 1386 0 2246 143 65 0 chrX 40695766 40696152 -121903778 + L1M4 LINE L1 5797 6207 -469 2438 70 7 0 chrX 40696152 40696451 -121903479 - AluY SINE Alu -9 302 2 5287 202 16 24 chrX 40696691 40697082 -121902848 + MER45B DNA AcHobo 1 394 -1187 2186 115 0 0 chrX 40697082 40697377 -121902553 - AluSx SINE Alu -17 295 1 5287 202 16 24 chrX 40697377 40697412 -121902518 + MER45B DNA AcHobo 394 428 -1153 2228 101 3 0 chrX 40697412 40697708 -121902222 + AluSx SINE Alu 1 297 -15 5287 202 16 24 chrX 40697708 40698323 -121901607 + MER45B DNA AcHobo 428 1035 -5 228 304 163 11 chrX 40698978 40699070 -121900860 - MIR SINE MIR -66 142 37 361 189 95 0 chrX 40699263 40699337 -121900593 - MLT1D LTR MaLR -420 85 5 501 183 5 115 chrX 40699354 40699562 -121900368 + L1MB8 LINE L1 2506 2690 -3456 3150 219 78 44 chrX 40699570 40700516 -121899414 + L1MB8 LINE L1 3790 4767 -1379 3405 186 38 15 chrX 40700516 40701194 -121898736 + L1MB8 LINE L1 5472 6165 -13 339 273 0 45 chrX 40701327 40701437 -121898493 - MIR SINE MIR -2 260 156 298 266 111 12 chrX 40701429 40701524 -121898406 - MIR SINE MIR -99 109 6 * 2370 224 66 19 chrX 40701654 40702172 -121897758 - MLT1F LTR MaLR 0 542 1 2619 17 0 3 chrX 40702593 40702883 -121897047 + AluY SINE Alu 1 289 -22 339 197 0 0 chrX 40703050 40703111 -121896819 - L2 LINE L2 -2 3311 3251 260 290 53 30 chrX 40703653 40703784 -121896146 - L2 LINE L2 0 3272 3139 470 333 7 7 chrX 40703932 40704076 -121895854 + MIR SINE MIR 2 145 -117 5965 148 15 22 chrX 40704364 40705319 -121894611 - L1MA8 LINE L1 0 6291 5337 2705 82 35 16 chrX 40705319 40705687 -121894243 + THE1C LTR MaLR 1 375 0 5965 148 15 22 chrX 40705687 40705829 -121894101 - L1MA8 LINE L1 -954 5337 5196 4464 107 1 39 chrX 40705829 40706502 -121893428 - MER4D LTR ERV1 0 872 225 242 157 0 20 chrX 40706979 40707030 -121892900 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1589 132 32 12 chrX 40708306 40708556 -121891374 - MER4D LTR ERV1 -617 255 1 12658 145 24 28 chrX 40708556 40710160 -121889770 - L1MA8 LINE L1 -947 5199 3589 3038 137 9 0 chrX 40710160 40710583 -121889347 - MSTA LTR MaLR -1 427 1 12658 145 24 28 chrX 40710583 40710964 -121888966 - L1MA8 LINE L1 -2557 3589 3224 2369 98 3 9 chrX 40710964 40711279 -121888651 - AluSq SINE Alu 0 313 1 12658 145 24 28 chrX 40711279 40711631 -121888299 - L1MA8 LINE L1 -2922 3224 2872 232 233 133 0 chrX 40711856 40711916 -121888014 + LTR16C LTR ERVL 76 143 -348 1225 226 9 0 chrX 40711963 40712193 -121887737 + LTR16C LTR ERVL 257 488 -3 343 361 9 0 chrX 40712511 40712619 -121887311 + L2 LINE L2 3154 3262 -10 483 328 74 12 chrX 40712697 40712941 -121886989 - MIR SINE MIR -2 260 2 1650 210 133 26 chrX 40713037 40713466 -121886464 + MLT1D LTR MaLR 5 479 -26 1140 333 104 29 chrX 40713638 40714097 -121885833 - L3 LINE CR1 -1 1576 1153 1967 156 0 3 chrX 40714097 40714385 -121885545 + AluJo SINE Alu 1 287 -25 1140 333 104 29 chrX 40714385 40714720 -121885210 - L3 LINE CR1 -424 1153 722 356 252 136 39 chrX 40715720 40715875 -121884055 - MIR SINE MIR -42 220 51 200 310 14 28 chrX 40716113 40716184 -121883746 - L2 LINE L2 -4 3268 3199 439 223 91 25 chrX 40716228 40716349 -121883581 - MLT1G3 LTR MaLR 0 549 421 1853 200 118 35 chrX 40716359 40716810 -121883120 - MER77 LTR ERV1 -4 601 114 977 277 49 20 chrX 40716849 40717235 -121882695 - MLT1G3 LTR MaLR -128 467 5 2409 88 0 0 chrX 40717450 40717747 -121882183 + AluSc SINE Alu 1 297 -12 212 29 0 59 chrX 40717832 40717866 -121882064 + (CATA)n Simple_repeat Simple_repeat 2 33 0 5067 234 31 35 chrX 40718324 40718813 -121881117 + L1M4 LINE L1 2489 2978 -3168 1982 147 37 0 chrX 40718813 40719139 -121880791 + L1MB4 LINE L1 5837 6174 -6 5067 234 31 35 chrX 40719139 40720205 -121879725 + L1M4 LINE L1 2978 4038 -2108 1241 223 75 121 chrX 40720205 40720967 -121878963 - LTR8A LTR ERV1 0 727 1 1881 185 53 24 chrX 40720971 40721712 -121878218 + L1MDa LINE L1 1154 4660 -1880 2271 169 68 56 chrX 40722027 40722524 -121877406 + MLT1D LTR MaLR 3 505 0 1782 172 59 56 chrX 40723252 40723847 -121876083 + L1MC5 LINE L1 7264 7931 -30 2798 78 26 0 chrX 40724213 40724559 -121875371 + L1PA7 LINE L1 5800 6154 0 2272 139 109 24 chrX 40724635 40724940 -121874990 - LOR1b LTR ERV1 0 461 109 1964 133 69 39 chrX 40724940 40725302 -121874628 - THE1C LTR MaLR -2 373 1 2272 139 109 24 chrX 40725302 40725419 -121874511 - LOR1b LTR ERV1 -352 109 3 2213 109 3 0 chrX 40725818 40726111 -121873819 + AluSg SINE Alu 1 294 -16 4771 114 23 89 chrX 40726275 40727116 -121872814 - LTR1 LTR ERV1 0 785 1 638 213 67 13 chrX 40727296 40727446 -121872484 - MER5A DNA MER1_type -26 163 6 343 261 45 37 chrX 40727643 40727705 -121872225 - MIR SINE MIR -4 258 198 2347 102 3 0 chrX 40727705 40728009 -121871921 - AluSq SINE Alu -8 305 1 343 261 45 37 chrX 40728009 40728080 -121871850 - MIR SINE MIR -64 198 124 2478 82 0 0 chrX 40728124 40728428 -121871502 - AluSg SINE Alu -6 304 1 2205 126 101 130 chrX 40728601 40728737 -121871193 - LTR49 LTR ERV1 -13 550 412 1938 148 7 3 chrX 40728737 40729041 -121870889 + AluJo SINE Alu 1 305 -7 2205 126 101 130 chrX 40729041 40729511 -121870419 - LTR49 LTR ERV1 -151 412 1 201 94 0 0 chrX 40730111 40730143 -121869787 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 201 74 0 0 chrX 40731841 40731868 -121868062 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1072 62 23 0 chrX 40731869 40731998 -121867932 - AluY SINE Alu -179 132 1 1652 146 21 14 chrX 40732016 40732296 -121867634 - AluJo SINE Alu -30 282 1 863 168 17 23 chrX 40732343 40732516 -121867414 + MIR SINE MIR 91 262 0 2593 157 20 0 chrX 40732543 40732945 -121866985 + Tigger7 DNA MER2_type 1 410 -323 1952 240 73 23 chrX 40733063 40733620 -121866310 - MER77 LTR ERV1 -14 591 41 320 292 74 35 chrX 40733634 40733891 -121866039 + L1MEc LINE L1 1931 2197 -4199 2517 64 3 0 chrX 40733974 40734270 -121865660 - AluSp SINE Alu -16 297 1 2187 33 0 0 chrX 40734450 40734694 -121865236 + L1PA3 LINE L1 5912 6155 0 466 211 216 65 chrX 40735489 40735579 -121864351 + MIR SINE MIR 25 100 -162 1794 169 3 19 chrX 40735579 40735886 -121864044 - AluJo SINE Alu -10 302 1 466 211 216 65 chrX 40735886 40735980 -121863950 + MIR SINE MIR 100 237 -25 1474 254 30 68 chrX 40737123 40737681 -121862249 + MER34 LTR ERV1 1 537 -5 795 159 0 0 chrX 40737687 40737838 -121862092 + GA-rich Low_complexity Low_complexity 2 152 0 218 355 30 46 chrX 40738354 40738551 -121861379 + L2 LINE L2 2678 2871 -443 468 0 0 0 chrX 40739441 40739493 -121860437 + (TG)n Simple_repeat Simple_repeat 2 53 0 1205 218 54 78 chrX 40741611 40742005 -121857925 - MER39 LTR ERV1 0 707 324 2481 122 8 40 chrX 40742005 40742381 -121857549 - THE1B LTR MaLR 0 364 1 1205 218 54 78 chrX 40742381 40742449 -121857481 - MER39 LTR ERV1 -383 324 256 237 267 17 0 chrX 40742459 40742519 -121857411 - LTR48B LTR ERV1 -580 64 4 4177 119 47 64 chrX 40742860 40743030 -121856900 - LTR8A LTR ERV1 0 727 556 2226 101 3 10 chrX 40743030 40743326 -121856604 - AluSg1 SINE Alu -15 294 1 4177 119 47 64 chrX 40743326 40743894 -121856036 - LTR8A LTR ERV1 -171 556 1 933 184 160 85 chrX 40743904 40744376 -121855554 - MER34C LTR ERV1 -36 751 37 1785 104 0 0 chrX 40745761 40745992 -121853938 + AluSg/x SINE Alu 66 296 -16 1058 177 146 81 chrX 40746029 40746413 -121853517 + LTR37A LTR ERV1 18 426 0 796 230 97 90 chrX 40747801 40748335 -121851595 - L1MC4 LINE L1 0 8042 7505 1889 139 7 42 chrX 40748383 40748692 -121851238 + MLT1C LTR MaLR 5 302 -165 500 208 162 63 chrX 40748700 40749085 -121850845 + MER34B LTR ERV1 5 520 -65 584 153 99 54 chrX 40749101 40749139 -121850791 - FLAM_A SINE Alu -190 121 86 3493 193 8 69 chrX 40749139 40749874 -121850056 - LTR8 LTR ERV1 -1 690 1 584 153 99 54 chrX 40749874 40749946 -121849984 - FLAM_A SINE Alu -225 86 6 934 184 6 12 chrX 40750017 40750185 -121849745 + MLT1C LTR MaLR 301 467 0 756 194 65 51 chrX 40750185 40750399 -121849531 - L1MC5 LINE L1 -391 7417 7215 836 185 7 0 chrX 40750406 40750541 -121849389 + AluJo SINE Alu 2 137 -175 1635 229 44 38 chrX 40750547 40751226 -121848704 - L1MC4 LINE L1 -730 7231 6621 2563 271 62 22 chrX 40751227 40751969 -121847961 + MER45C DNA AcHobo 2 777 -176 1411 104 5 9 chrX 40751974 40752186 -121847744 - MER6 DNA MER2_type -1 864 654 2902 229 83 23 chrX 40752193 40753089 -121846841 + L1PB1 LINE L1 6 954 -5909 15298 192 20 24 chrX 40753089 40754814 -121845116 + L1PB1 LINE L1 2228 3958 -2909 2215 119 0 10 chrX 40754814 40755117 -121844813 - AluSx SINE Alu -11 301 2 15298 192 20 24 chrX 40755117 40755128 -121844802 + L1PB1 LINE L1 3958 3968 -2899 273 29 0 0 chrX 40755128 40755162 -121844768 + (CA)n Simple_repeat Simple_repeat 2 35 0 15298 192 20 24 chrX 40755162 40757280 -121842650 + L1PB1 LINE L1 3968 6093 -774 2372 96 7 0 chrX 40757280 40757583 -121842347 + AluSc SINE Alu 1 305 -4 15298 192 20 24 chrX 40757583 40757647 -121842283 + L1PB1 LINE L1 6093 6156 -711 2103 88 10 33 chrX 40757647 40757954 -121841976 + AluY SINE Alu 1 300 -11 15298 192 20 24 chrX 40757954 40758315 -121841615 + L1PB1 LINE L1 6156 6507 -360 423 0 0 0 chrX 40758315 40758362 -121841568 + (TA)n Simple_repeat Simple_repeat 2 48 0 15298 192 20 24 chrX 40758362 40758721 -121841209 + L1PB1 LINE L1 6507 6866 -1 918 143 0 19 chrX 40758733 40758894 -121841036 - MER6 DNA MER2_type -194 671 514 2225 185 60 137 chrX 40758894 40759391 -121840539 - LTR8A LTR ERV1 0 727 312 2382 88 7 0 chrX 40759391 40759699 -121840231 + AluSg SINE Alu 1 310 0 2225 185 60 137 chrX 40759699 40759989 -121839941 - LTR8A LTR ERV1 -415 312 1 * 3008 189 17 15 chrX 40759989 40760454 -121839476 - MER6 DNA MER2_type -345 520 52 3291 169 78 3 chrX 40760454 40761033 -121838897 - LTR26E LTR ERV1 0 622 1 3008 189 17 15 chrX 40761033 40761086 -121838844 - MER6 DNA MER2_type -813 52 1 1157 188 58 49 chrX 40761182 40761507 -121838423 + MER45B DNA AcHobo 713 1040 0 2948 236 116 19 chrX 40761593 40762671 -121837259 - L1MC4a LINE L1 -1371 6437 5255 907 256 120 81 chrX 40762828 40763446 -121836484 + L1MD1 LINE L1 1 642 -5898 300 332 57 81 chrX 40763922 40764169 -121835761 + L1MD1 LINE L1 475 715 -5825 2198 141 82 24 chrX 40764169 40764630 -121835300 + L1MD1 LINE L1 985 1472 -5071 2044 204 41 59 chrX 40764994 40765659 -121834271 + L1MD1 LINE L1 1435 2087 -4453 * 7278 239 59 21 chrX 40765658 40766549 -121833381 + L1MD1 LINE L1 3467 4323 -2430 1536 179 14 17 chrX 40766549 40766840 -121833090 - AluJb SINE Alu -22 290 1 7278 239 59 21 chrX 40766840 40768263 -121831667 + L1MD1 LINE L1 4323 5884 -869 2204 99 0 16 chrX 40768263 40768567 -121831363 + AluSq SINE Alu 1 299 -14 7278 239 59 21 chrX 40768567 40768720 -121831210 + L1MD1 LINE L1 5884 6030 -723 2378 137 3 8 chrX 40768732 40769090 -121830840 - MLT1A1 LTR MaLR 0 365 10 2631 155 12 0 chrX 40769099 40769512 -121830418 - MLT1A1-int LTR MaLR 0 1735 1318 4518 198 60 40 chrX 40769636 40770623 -121829307 - MLT1A1-int LTR MaLR -725 1010 5 2848 194 7 61 chrX 40770627 40770690 -121829240 - MLT2B3 LTR ERVL 0 554 489 1445 179 42 28 chrX 40770690 40770975 -121828955 - AluJb SINE Alu -23 289 1 2848 194 7 61 chrX 40770975 40771497 -121828433 - MLT2B3 LTR ERVL -65 489 1 13827 123 23 2 chrX 40771497 40773484 -121826446 - ERVL-B3 LTR ERVL -7 5757 3730 788 165 165 6 chrX 40773486 40773662 -121826268 + L1MD1 LINE L1 6074 6277 -476 907 204 0 27 chrX 40773664 40773850 -121826080 + L1MD1 LINE L1 6338 6518 -118 1751 216 8 16 chrX 40773850 40774220 -121825710 - MLT1A2 LTR MaLR 0 374 8 870 172 48 88 chrX 40774240 40774355 -121825575 - L1MB4 LINE L1 -4 6176 6058 2495 78 3 0 chrX 40774355 40774662 -121825268 - AluSp SINE Alu -5 308 1 870 172 48 88 chrX 40774662 40774796 -121825134 - L1MB4 LINE L1 -122 6058 5937 704 156 16 16 chrX 40774795 40774923 -121825007 + L1MD1 LINE L1 6505 6632 -4 * 3864 127 12 46 chrX 40774965 40775088 -121824842 - Tigger1 DNA MER2_type 0 2418 2292 584 173 135 0 chrX 40775088 40775192 -121824738 + FLAM_C SINE Alu 1 118 -15 3864 127 12 46 chrX 40775192 40775724 -121824206 - Tigger1 DNA MER2_type -126 2292 1785 7474 127 17 13 chrX 40775824 40777781 -121822149 - L1MA2 LINE L1 -12 7711 5745 1928 141 3 28 chrX 40777781 40778101 -121821829 - AluJb SINE Alu 0 312 1 7474 127 17 13 chrX 40778101 40778391 -121821539 - L1MA2 LINE L1 -1978 5745 5458 2146 196 28 8 chrX 40778387 40778856 -121821074 - L1MA2 LINE L1 -3542 4023 3546 * 4777 46 3 36 chrX 40778876 40779480 -121820450 - LTR10C LTR ERV1 -7 584 1 4909 99 42 42 chrX 40779480 40779750 -121820180 - L1MA2 LINE L1 -3994 3571 3302 186 43 0 0 chrX 40779750 40779773 -121820157 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4909 99 42 42 chrX 40779773 40779892 -121820038 - L1MA2 LINE L1 -4263 3302 3184 2177 105 28 0 chrX 40779892 40780178 -121819752 - AluSg SINE Alu -16 294 1 4909 99 42 42 chrX 40780178 40780464 -121819466 - L1MA2 LINE L1 -4381 3184 2892 2099 108 50 0 chrX 40780464 40780761 -121819169 - AluSx SINE Alu 0 312 1 4909 99 42 42 chrX 40780761 40780897 -121819033 - L1MA2 LINE L1 -4672 2893 2758 1795 132 4 0 chrX 40780897 40781162 -121818768 - AluSx SINE Alu -8 304 39 2324 110 0 0 chrX 40781168 40781469 -121818461 - AluSq SINE Alu -12 301 1 470 163 0 0 chrX 40781475 40781555 -121818375 - L1ME LINE L1 -5094 976 897 5105 98 16 33 chrX 40781557 40781787 -121818143 - Tigger1 DNA MER2_type -1172 1246 1014 2210 123 0 3 chrX 40781787 40782096 -121817834 + AluSp SINE Alu 6 313 0 5105 98 16 33 chrX 40782096 40782631 -121817299 - Tigger1 DNA MER2_type -1404 1014 494 332 224 0 0 chrX 40782648 40782715 -121817215 - Tigger1 DNA MER2_type -2351 67 1 2259 117 0 0 chrX 40782786 40783085 -121816845 - AluSx SINE Alu -13 299 1 2827 167 33 8 chrX 40783086 40783577 -121816353 - Tigger1 DNA MER2_type -1915 503 1 1338 167 0 5 chrX 40783651 40783861 -121816069 - MER3 DNA MER1_type 0 209 1 2260 107 0 7 chrX 40783865 40784175 -121815755 + AluSg1 SINE Alu 1 308 -1 309 283 42 78 chrX 40784218 40784384 -121815546 + L1MDa LINE L1 2401 2560 -3980 2028 120 46 0 chrX 40784487 40784770 -121815160 + AluSg SINE Alu 1 296 -14 2151 92 0 7 chrX 40785522 40785803 -121814127 - AluSx SINE Alu -33 279 1 443 289 18 0 chrX 40785987 40786101 -121813829 + L2 LINE L2 2912 3027 -286 945 230 42 82 chrX 40786200 40786407 -121813523 + L2 LINE L2 2950 3137 -176 2491 169 36 65 chrX 40786407 40786932 -121812998 + LTR54 LTR ERV1 1 510 0 945 230 42 82 chrX 40786932 40787103 -121812827 + L2 LINE L2 3137 3313 0 380 271 57 64 chrX 40787285 40787565 -121812365 + L1MDa LINE L1 3096 3373 -3167 1626 106 12 27 chrX 40787637 40787707 -121812223 - MER41A LTR ERV1 0 554 484 2192 108 7 0 chrX 40787707 40788032 -121811898 + AluSx SINE Alu 1 312 0 1626 106 12 27 chrX 40788032 40788217 -121811713 - MER41A LTR ERV1 -70 484 303 1669 158 25 0 chrX 40788716 40788995 -121810935 + AluSq SINE Alu 24 309 -4 531 239 37 101 chrX 40789860 40790037 -121809893 + L1MEc LINE L1 1704 1891 -4505 2251 108 3 0 chrX 40790037 40790333 -121809597 - AluSx SINE Alu -15 297 1 531 239 37 101 chrX 40790333 40790560 -121809370 + L1MEc LINE L1 1891 2082 -4314 2321 83 3 0 chrX 40790704 40790994 -121808936 + AluSx SINE Alu 1 291 -21 1353 221 59 27 chrX 40791072 40791175 -121808755 + L1MB7 LINE L1 4665 4763 -1383 1938 106 7 0 chrX 40791175 40791449 -121808481 + L1MA8 LINE L1 6012 6287 -4 1353 221 59 27 chrX 40791449 40791767 -121808163 + L1MB7 LINE L1 4763 5069 -1077 3506 137 14 78 chrX 40791767 40791987 -121807943 + MLT2B3 LTR ERVL 1 234 -320 294 29 0 0 chrX 40791987 40792022 -121807908 + (TC)n Simple_repeat Simple_repeat 2 36 0 3506 137 14 78 chrX 40792022 40792393 -121807537 + MLT2B3 LTR ERVL 234 554 0 4612 231 19 38 chrX 40792397 40793488 -121806442 + MLT-int LTR MaLR 5 1075 -660 2536 164 28 14 chrX 40793498 40794012 -121805918 - LTR27 LTR ERV1 -11 490 2 3090 227 30 0 chrX 40794012 40794606 -121805324 + MSTC-int LTR MaLR 1124 1735 0 1065 199 137 59 chrX 40794606 40794963 -121804967 + MSTC LTR MaLR 1 385 -43 301 83 125 0 chrX 40796750 40796798 -121803132 + MSTC LTR MaLR 403 456 -1 3347 185 90 41 chrX 40796799 40796930 -121803000 + L1MB7 LINE L1 5062 5185 -999 2275 123 0 0 chrX 40796930 40797239 -121802691 + AluSq SINE Alu 1 309 -4 3347 185 90 41 chrX 40797239 40797782 -121802148 + L1MB7 LINE L1 5185 5700 -484 1771 171 0 23 chrX 40797782 40798081 -121801849 + AluJb SINE Alu 1 292 -20 3347 185 90 41 chrX 40798081 40798323 -121801607 + L1MB7 LINE L1 5700 5929 -255 2338 93 3 0 chrX 40798323 40798614 -121801316 - AluSp SINE Alu -21 292 1 3347 185 90 41 chrX 40798614 40798750 -121801180 + L1MB7 LINE L1 5929 6184 0 405 0 0 0 chrX 40798975 40799020 -121800910 + (TA)n Simple_repeat Simple_repeat 2 46 0 45366 36 2 1 chrX 40799023 40805167 -121794763 + L1PA4 LINE L1 2 6147 -8 212 0 36 0 chrX 40805175 40805203 -121794727 + (TA)n Simple_repeat Simple_repeat 2 30 0 196 256 0 0 chrX 40806309 40806352 -121793578 + MIR SINE MIR 216 258 -4 595 321 91 29 chrX 40806884 40807224 -121792706 + L2 LINE L2 2912 3272 0 2251 89 14 7 chrX 40808119 40808411 -121791519 - AluSc SINE Alu -15 294 1 2177 77 73 0 chrX 40808684 40808971 -121790959 - AluSx SINE Alu -4 308 1 27 0 0 0 chrX 40811494 40811521 -121788409 + AT_rich Low_complexity Low_complexity 1 27 0 1359 207 192 114 chrX 40811742 40812540 -121787390 - L2 LINE L2 -18 3295 2273 296 248 197 8 chrX 40812540 40812657 -121787273 - L1ME3A LINE L1 -4 6166 6028 1359 207 192 114 chrX 40812657 40812922 -121787008 - L2 LINE L2 -1040 2273 2030 195 286 107 54 chrX 40812937 40813049 -121786881 - L2 LINE L2 -33 3239 3122 2331 85 3 3 chrX 40813138 40813432 -121786498 - AluSp SINE Alu -19 294 1 220 347 13 0 chrX 40813474 40813549 -121786381 - L2 LINE L2 -217 3055 2980 1487 213 68 43 chrX 40813559 40813953 -121785977 - MLT1C LTR MaLR 0 467 64 246 164 229 0 chrX 40814000 40814061 -121785869 - MLT1C LTR MaLR -385 82 8 865 248 39 19 chrX 40814100 40814306 -121785624 - MER63A DNA MER1_type 0 210 1 248 348 0 77 chrX 40814358 40814431 -121785499 - L2 LINE L2 -467 2847 2791 1787 167 3 13 chrX 40814431 40814731 -121785199 - AluJb SINE Alu -15 297 1 248 348 0 77 chrX 40814731 40814812 -121785118 - L2 LINE L2 -523 2791 2705 2303 101 149 11 chrX 40814994 40815370 -121784560 + MSTA LTR MaLR 1 428 0 312 241 172 0 chrX 40815430 40815546 -121784384 - L2 LINE L2 -3 3310 3175 2095 208 96 47 chrX 40815831 40816426 -121783504 + MLT1E3 LTR MaLR 1 624 0 2252 103 0 7 chrX 40817432 40817733 -121782197 - AluSx SINE Alu -12 300 2 7047 43 17 36 chrX 40818015 40819562 -121780368 + SVA Other Other 6 1408 0 2319 90 0 7 chrX 40819819 40820119 -121779811 - AluSc SINE Alu -11 298 1 247 83 28 0 chrX 40820583 40820619 -121779311 + Alu SINE Alu 1 37 -263 1218 157 66 138 chrX 40820719 40821024 -121778906 - LTR8 LTR ERV1 -435 256 1 238 297 54 40 chrX 40821031 40821105 -121778825 + L2 LINE L2 3189 3263 -9 187 344 145 0 chrX 40821121 40821252 -121778678 + MIR SINE MIR 23 172 -90 24 67 0 0 chrX 40821438 40821483 -121778447 + AT_rich Low_complexity Low_complexity 1 45 0 357 93 0 0 chrX 40821891 40821945 -121777985 + (TG)n Simple_repeat Simple_repeat 2 55 0 1227 179 119 112 chrX 40822930 40823476 -121776454 - MER34C LTR ERV1 0 585 36 235 287 19 83 chrX 40823874 40823982 -121775948 - MLT2E LTR ERVL -490 138 38 364 217 0 0 chrX 40824340 40824409 -121775521 - MER92C LTR ERV1 -2 552 484 418 251 30 84 chrX 40824501 40824668 -121775262 - MER92C LTR ERV1 -386 168 11 1592 193 143 48 chrX 40824794 40825214 -121774716 + MER34C LTR ERV1 1 460 -125 297 160 47 6 chrX 40825214 40825383 -121774547 + (TA)n Simple_repeat Simple_repeat 1 176 0 685 46 73 0 chrX 40825485 40825594 -121774336 - MER41B LTR ERV1 -518 117 1 244 197 0 15 chrX 40825682 40825748 -121774182 - L1M4 LINE L1 -870 5276 5212 * 256 301 92 50 chrX 40825743 40826006 -121773924 + L1M4 LINE L1 3413 3664 -2482 249 108 0 0 chrX 40826006 40826043 -121773887 + (CA)n Simple_repeat Simple_repeat 2 38 0 256 301 92 50 chrX 40826043 40826263 -121773667 + L1M4 LINE L1 3664 3926 -2220 2079 107 4 4 chrX 40826263 40826544 -121773386 + AluSx SINE Alu 3 283 -29 256 301 92 50 chrX 40826544 40826638 -121773292 + L1M4 LINE L1 3926 4015 -2131 6198 102 40 28 chrX 40826915 40826944 -121772986 - Tigger3b DNA MER2_type -1799 1229 1202 2138 100 0 0 chrX 40826944 40827223 -121772707 + AluSg SINE Alu 1 279 -31 414 0 0 0 chrX 40827223 40827269 -121772661 + (CA)n Simple_repeat Simple_repeat 1 46 0 6198 102 40 28 chrX 40827269 40827706 -121772224 - Tigger3b DNA MER2_type -1826 1202 771 1765 169 10 20 chrX 40827706 40828002 -121771928 + AluJo SINE Alu 3 295 -17 2307 81 0 3 chrX 40828002 40828300 -121771630 + AluSg SINE Alu 1 297 -13 6198 102 40 28 chrX 40828300 40828815 -121771115 - Tigger3b DNA MER2_type -2256 772 234 238 216 40 54 chrX 40830293 40830367 -121769563 + L2 LINE L2 3199 3271 -1 204 125 0 0 chrX 40832184 40832216 -121767714 + (T)n Simple_repeat Simple_repeat 1 32 0 452 254 24 104 chrX 40833255 40833479 -121766451 - MIR SINE MIR -15 247 37 21 0 0 0 chrX 40833758 40833779 -121766151 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 40833824 40833847 -121766083 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chrX 40833997 40834023 -121765907 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2137 115 0 3 chrX 40834025 40834313 -121765617 - AluSg SINE Alu -23 287 1 645 67 86 67 chrX 40834321 40834426 -121765504 - L1PA8 LINE L1 -11 6161 6055 1081 54 15 0 chrX 40834451 40834581 -121765349 - AluYb8 SINE Alu -186 132 1 795 124 8 0 chrX 40834581 40834710 -121765220 - L1PA8 LINE L1 -104 6068 5939 2579 87 0 0 chrX 40834784 40835096 -121764834 - AluSx SINE Alu 0 312 1 183 253 51 158 chrX 40835246 40835538 -121764392 + L2 LINE L2 2623 2883 -431 205 246 140 18 chrX 40835623 40835680 -121764250 + L2 LINE L2 3196 3259 -54 2589 139 99 9 chrX 40835705 40836128 -121763802 - LOR1b LTR ERV1 0 461 1 24 0 0 0 chrX 40836540 40836564 -121763366 + AT_rich Low_complexity Low_complexity 1 24 0 534 122 0 0 chrX 40836564 40836638 -121763292 - MER58A DNA MER1_type 0 224 151 1885 125 0 18 chrX 40836663 40836942 -121762988 + AluSx SINE Alu 1 274 -38 1030 68 34 17 chrX 40836948 40837125 -121762805 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 351 246 24 0 chrX 40837139 40837265 -121762665 + GA-rich Low_complexity Low_complexity 3 131 0 194 61 0 30 chrX 40837265 40837298 -121762632 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 496 195 0 0 chrX 40837305 40837382 -121762548 - MER58A DNA MER1_type -26 81 5 607 247 126 27 chrX 40837872 40838095 -121761835 + LTR37A LTR ERV1 1 245 -181 435 238 0 10 chrX 40838150 40838251 -121761679 + MER31-int LTR ERV1 4370 4469 -467 259 273 0 39 chrX 40838319 40838396 -121761534 + MER31-int LTR ERV1 4482 4555 -381 435 177 79 0 chrX 40838956 40839035 -121760895 - MER34C LTR ERV1 0 585 467 2092 102 64 7 chrX 40839035 40839330 -121760600 + AluSx SINE Alu 1 312 0 435 177 79 0 chrX 40839330 40839354 -121760576 - MER34C LTR ERV1 -118 467 446 3016 140 45 2 chrX 40839354 40839819 -121760111 + MER31A LTR ERV1 1 485 0 1668 157 44 4 chrX 40839827 40840101 -121759829 + AluJo SINE Alu 1 285 -27 520 76 47 35 chrX 40840101 40840272 -121759658 + (TA)n Simple_repeat Simple_repeat 1 173 0 24 0 0 0 chrX 40840287 40840311 -121759619 + AT_rich Low_complexity Low_complexity 1 24 0 485 90 62 29 chrX 40840327 40841094 -121758836 + (TA)n Simple_repeat Simple_repeat 1 792 0 2675 128 23 0 chrX 40841675 40842067 -121757863 - MSTA LTR MaLR -27 401 1 5880 229 86 25 chrX 40842067 40843493 -121756437 + MSTD-int LTR MaLR 223 1735 0 2100 157 93 6 chrX 40843493 40843857 -121756073 + MSTD LTR MaLR 1 396 0 427 353 24 0 chrX 40844519 40844686 -121755244 - MER117 DNA MER1_type -26 171 1 2131 116 0 26 chrX 40847626 40847915 -121752015 + AluSx SINE Alu 1 296 -16 180 97 0 0 chrX 40847915 40847946 -121751984 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 189 107 0 0 chrX 40847949 40847977 -121751953 + (TA)n Simple_repeat Simple_repeat 1 28 0 2131 116 0 26 chrX 40847977 40847993 -121751937 + AluSx SINE Alu 298 302 -10 1980 151 46 6 chrX 40848119 40848443 -121751487 - MER1B DNA MER1_type 0 337 1 1983 146 9 27 chrX 40848443 40848771 -121751159 - MLT2C1 LTR ERVL -74 323 2 2219 160 75 23 chrX 40848772 40849215 -121750715 - ERVL-C1 LTR ERVL -8 5756 5291 403 219 10 31 chrX 40849316 40849412 -121750518 + MER34 LTR ERV1 448 541 -1 605 275 51 83 chrX 40849412 40849522 -121750408 - L2 LINE L2 -170 3143 3031 2415 100 0 0 chrX 40849522 40849832 -121750098 - AluSp SINE Alu -3 310 1 605 275 51 83 chrX 40849832 40850075 -121749855 - L2 LINE L2 -282 3031 2782 1063 189 27 5 chrX 40850075 40850260 -121749670 - MER5A DNA MER1_type 0 189 1 605 275 51 83 chrX 40850260 40850358 -121749572 - L2 LINE L2 -531 2782 2711 696 271 71 80 chrX 40850358 40850905 -121749025 + MER34 LTR ERV1 1 542 0 605 275 51 83 chrX 40850905 40850974 -121748956 - L2 LINE L2 -602 2711 2641 1918 192 27 64 chrX 40851037 40851521 -121748409 - MER31B LTR ERV1 0 466 1 189 0 0 0 chrX 40851650 40851671 -121748259 + (CAATT)n Simple_repeat Simple_repeat 4 24 0 1722 166 74 67 chrX 40851765 40852210 -121747720 - LTR8A LTR ERV1 0 727 280 1712 151 23 4 chrX 40852329 40852588 -121747342 - ERVL-C1 LTR ERVL -700 5064 4801 602 226 0 16 chrX 40852588 40852712 -121747218 - MLT1D-int LTR MaLR -645 726 605 3142 200 12 0 chrX 40852788 40853387 -121746543 - MLT1D-int LTR MaLR -765 606 1 1500 212 157 20 chrX 40853389 40853828 -121746102 - MLT1D LTR MaLR -2 503 5 404 256 45 19 chrX 40853829 40853985 -121745945 - L1MEc LINE L1 -3802 2413 2254 369 324 38 21 chrX 40853996 40854369 -121745561 - L1MEc LINE L1 -4144 2252 1874 367 283 157 10 chrX 40854393 40854591 -121745339 - L1MEc LINE L1 -4585 1811 1585 410 267 123 79 chrX 40854638 40854694 -121745236 + MLT1J LTR MaLR 201 253 -258 1892 137 25 0 chrX 40854694 40854979 -121744951 - AluJo SINE Alu -20 292 1 410 267 123 79 chrX 40854979 40855318 -121744612 + MLT1J LTR MaLR 253 511 0 1050 249 24 69 chrX 40855405 40855794 -121744136 + L1MC4 LINE L1 6643 7110 -932 949 271 14 0 chrX 40855822 40856043 -121743887 - LTR16A LTR ERVL -24 426 203 1806 136 5 136 chrX 40856044 40856442 -121743488 + MER7A DNA MER2_type 2 345 -1 291 318 51 75 chrX 40856442 40856655 -121743275 - LTR16A1 LTR ERVL -249 208 1 544 249 50 36 chrX 40856663 40856884 -121743046 + L1MC4 LINE L1 7113 7336 -706 598 189 59 46 chrX 40856946 40857099 -121742831 + L1MC5 LINE L1 7311 7465 -496 1789 158 0 24 chrX 40857153 40857451 -121742479 - AluJo SINE Alu -16 296 6 395 127 0 0 chrX 40857699 40857754 -121742176 - AluSp SINE Alu -106 197 143 521 213 115 55 chrX 40857849 40858032 -121741898 + L2 LINE L2 3118 3311 -2 2229 101 0 7 chrX 40858340 40858637 -121741293 - AluSx SINE Alu -17 295 1 726 147 0 120 chrX 40858715 40858842 -121741088 - FLAM_A SINE Alu -170 132 24 2219 109 0 7 chrX 40858842 40859145 -121740785 + AluSx SINE Alu 1 301 -11 726 147 0 120 chrX 40859145 40859167 -121740763 - FLAM_A SINE Alu -278 24 1 1743 118 0 0 chrX 40859842 40860079 -121739851 + AluSx SINE Alu 1 237 -75 1005 208 86 76 chrX 40860423 40860602 -121739328 - L1MC5 LINE L1 -44 7917 7741 695 51 0 0 chrX 40860602 40860680 -121739250 + MADE1 DNA Mariner 1 78 -2 1005 208 86 76 chrX 40860680 40860919 -121739011 - L1MC5 LINE L1 -220 7741 7495 1541 175 4 8 chrX 40861029 40861281 -121738649 - AluJo SINE Alu -12 300 50 934 112 8 15 chrX 40861284 40861418 -121738512 - AluJo/FLAM SINE Alu -179 133 1 273 299 0 0 chrX 40862565 40862632 -121737298 - L2 LINE L2 -1 3271 3205 185 319 28 99 chrX 40862710 40862851 -121737079 - L2 LINE L2 -242 3030 2900 273 265 188 33 chrX 40863053 40863234 -121736696 - L1MC4a LINE L1 -1862 5946 5738 226 121 0 0 chrX 40863452 40863485 -121736445 - tRNA-Glu-GAG tRNA tRNA -39 36 4 5723 137 43 3 chrX 40863495 40864591 -121735339 + L1PA16 LINE L1 5024 6157 -9 388 195 0 35 chrX 40864599 40864686 -121735244 + L1MEd LINE L1 977 1060 -5059 324 299 110 7 chrX 40864689 40864843 -121735087 + L1ME3A LINE L1 5782 5951 -219 2423 87 0 3 chrX 40865267 40865577 -121734353 - AluSg SINE Alu -1 309 1 754 194 0 0 chrX 40866143 40866272 -121733658 - MLT1B LTR MaLR 0 390 262 1767 151 53 7 chrX 40866765 40867049 -121732881 - AluJo SINE Alu -15 297 1 1560 84 72 34 chrX 40868363 40868441 -121731489 - L1MA8 LINE L1 -5 6286 6212 9324 55 2 0 chrX 40868441 40869508 -121730422 - MER11C LTR ERVK -2 1069 1 1560 84 72 34 chrX 40869508 40869692 -121730238 - L1MA8 LINE L1 -79 6212 6014 279 328 17 17 chrX 40869736 40869852 -121730078 + L2 LINE L2 2404 2519 -795 246 161 0 54 chrX 40869842 40869898 -121730032 - L2 LINE L2 -677 2637 2585 * 845 260 0 35 chrX 40869921 40870148 -121729782 + MIR SINE MIR 28 246 -16 458 244 122 0 chrX 40870148 40870279 -121729651 + L2 LINE L2 3164 3310 -3 2165 100 0 0 chrX 40870597 40870878 -121729052 + AluSx SINE Alu 1 281 -31 377 135 0 0 chrX 40870826 40870878 -121729052 + AluS SINE Alu 228 320 0 283 73 0 0 chrX 40870878 40870919 -121729011 + (TAAA)n Simple_repeat Simple_repeat 4 72 0 546 252 34 113 chrX 40871070 40871336 -121728594 - L2 LINE L2 -12 3260 3016 4084 165 105 21 chrX 40871656 40872574 -121727356 - L1MB7 LINE L1 0 6184 5179 832 158 0 16 chrX 40872574 40872701 -121727229 - FRAM SINE Alu -11 165 41 1259 175 66 4 chrX 40872703 40872988 -121726942 - L1PA16 LINE L1 0 6163 5837 690 114 0 0 chrX 40872989 40873077 -121726853 - FLAM SINE Alu -18 125 38 3068 212 28 41 chrX 40873077 40873835 -121726095 - L1MB7 LINE L1 -961 5185 4438 344 268 159 43 chrX 40873974 40874112 -121725818 + L3 LINE CR1 1321 1474 -103 238 343 22 30 chrX 40874154 40874288 -121725642 + MER5A DNA MER1_type 31 163 -26 212 302 0 48 chrX 40875093 40875156 -121724774 - L3 LINE CR1 -932 645 586 670 241 98 20 chrX 40875658 40875861 -121724069 + L1M4b LINE L1 11 229 -6630 3377 198 53 41 chrX 40875946 40877283 -121722647 + L1PA8 LINE L1 4822 6172 0 1989 239 102 9 chrX 40877285 40877668 -121722262 + L1MD2 LINE L1 5551 6000 -359 261 0 0 0 chrX 40877668 40877697 -121722233 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1989 239 102 9 chrX 40877697 40877853 -121722077 + L1MD2 LINE L1 6000 6140 -219 3927 185 69 30 chrX 40877929 40878266 -121721664 + L1MB7 LINE L1 5188 5510 -674 2498 73 3 0 chrX 40878266 40878567 -121721363 - AluSp SINE Alu -11 302 1 3927 185 69 30 chrX 40878567 40879192 -121720738 + L1MB7 LINE L1 5510 6180 -4 2419 98 0 0 chrX 40882378 40882685 -121717245 + AluSx SINE Alu 1 307 -5 2137 100 3 55 chrX 40883772 40884083 -121715847 + AluSx SINE Alu 1 295 -17 297 280 160 29 chrX 40885804 40885979 -121713951 + MIR3 SINE MIR 2 199 -9 2510 74 0 0 chrX 40886517 40886814 -121713116 - AluSg SINE Alu -13 297 1 4034 175 87 5 chrX 40887367 40888148 -121711782 + L1MD2 LINE L1 5514 6358 -1 1132 166 20 20 chrX 40888229 40888428 -121711502 + AluJo SINE Alu 84 282 -30 351 0 0 0 chrX 40888431 40888470 -121711460 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1221 207 58 126 chrX 40888700 40889195 -121710735 + L1M4 LINE L1 3222 3668 -2478 217 287 49 57 chrX 40889898 40890020 -121709910 - MIR SINE MIR -122 140 20 4702 141 45 90 chrX 40890448 40891416 -121708514 - MER21A LTR ERV1 -6 925 1 531 0 0 0 chrX 40891762 40891821 -121708109 + (CA)n Simple_repeat Simple_repeat 2 60 0 240 86 0 0 chrX 40891825 40891860 -121708070 + (TC)n Simple_repeat Simple_repeat 1 35 0 305 354 67 20 chrX 40892247 40892442 -121707488 + MIR SINE MIR 9 212 -50 252 0 0 0 chrX 40893499 40893527 -121706403 + (TG)n Simple_repeat Simple_repeat 2 29 0 263 239 0 45 chrX 40894425 40894450 -121705480 + MER3 DNA MER1_type 27 48 -161 406 203 0 0 chrX 40894450 40894524 -121705406 - MER3 DNA MER1_type -1 208 135 3102 143 105 140 chrX 40894524 40894915 -121705015 + L1MC3 LINE L1 6705 7108 -677 294 207 0 117 chrX 40894915 40895026 -121704904 + MLT1F1 LTR MaLR 25 122 -445 3102 143 105 140 chrX 40895026 40895314 -121704616 + L1MC3 LINE L1 7108 7458 -327 2387 56 0 30 chrX 40895314 40895616 -121704314 + AluY SINE Alu 1 293 -18 3102 143 105 140 chrX 40895616 40895770 -121704160 + L1MC3 LINE L1 7458 7616 -169 226 316 76 0 chrX 40896064 40896143 -121703787 + MIR SINE MIR 165 249 -13 261 119 0 0 chrX 40896359 40896401 -121703529 + (CA)n Simple_repeat Simple_repeat 1 42 0 1047 128 7 0 chrX 40897447 40897595 -121702335 - AluJb SINE Alu -6 306 158 2406 126 10 42 chrX 40897645 40897700 -121702230 - L1MB2 LINE L1 0 6171 6116 2428 77 0 3 chrX 40897700 40897997 -121701933 - AluY SINE Alu -15 296 1 2406 126 10 42 chrX 40897997 40898347 -121701583 - L1MB2 LINE L1 -55 6116 5779 2041 100 18 7 chrX 40898350 40898655 -121701275 - AluSp SINE Alu 0 308 1 1015 178 11 11 chrX 40899257 40899448 -121700482 + MER3 DNA MER1_type 19 209 0 278 224 0 0 chrX 40899406 40899455 -121700475 - MER3 DNA MER1_type -120 89 41 * 554 305 64 5 chrX 40899584 40899771 -121700159 + MIR SINE MIR 17 214 -48 1325 174 0 9 chrX 40900559 40900777 -121699153 + AluJo SINE Alu 86 301 -11 353 139 62 5 chrX 40901057 40901136 -121698794 + Alu SINE Alu 237 302 0 284 106 21 0 chrX 40901250 40901297 -121698633 - L1MB4 LINE L1 0 6180 6133 475 62 0 0 chrX 40901299 40901363 -121698567 - Alu SINE Alu -4 305 242 946 169 17 34 chrX 40901969 40902146 -121697784 + FRAM SINE Alu 1 174 -2 255 247 108 88 chrX 40902191 40902385 -121697545 + L1ME3 LINE L1 5918 6115 -47 296 213 2 25 chrX 40902405 40902485 -121697445 - MLT1L LTR MaLR 0 615 431 238 179 0 0 chrX 40902666 40902705 -121697225 - LTR67 LTR ERVL -424 133 95 2300 83 7 0 chrX 40902915 40903204 -121696726 - AluSp SINE Alu -22 291 1 2419 97 3 0 chrX 40903215 40903526 -121696404 - AluSq SINE Alu -1 312 1 2384 99 3 0 chrX 40903527 40903831 -121696099 - AluSq SINE Alu -8 305 1 25 51 0 0 chrX 40905455 40905494 -121694436 + AT_rich Low_complexity Low_complexity 1 39 0 44193 30 22 1 chrX 40905497 40911525 -121688405 - L1PA3 LINE L1 0 6155 1 274 216 14 0 chrX 40911525 40911599 -121688331 - MER33 DNA MER1_type -156 207 133 2379 110 0 0 chrX 40911599 40911908 -121688022 + AluSx SINE Alu 2 310 -2 469 159 232 1 chrX 40911924 40912020 -121687910 - MER33 DNA MER1_type -250 74 1 446 134 98 0 chrX 40912400 40912482 -121687448 - L1MB7 LINE L1 0 6184 6095 2017 124 35 0 chrX 40912491 40912774 -121687156 - AluSx SINE Alu -19 293 1 849 181 85 16 chrX 40912785 40912973 -121686957 - L1MB4 LINE L1 0 6180 5980 1791 164 13 20 chrX 40913466 40913770 -121686160 - AluJo SINE Alu -10 302 1 1592 138 12 12 chrX 40914432 40914685 -121685245 + AluJb SINE Alu 1 253 -59 2105 131 3 3 chrX 40915025 40915337 -121684593 - AluJb SINE Alu 0 312 1 248 123 55 0 chrX 40915832 40915905 -121684025 + (TAA)n Simple_repeat Simple_repeat 3 79 0 239 276 0 0 chrX 40916383 40916441 -121683489 + A-rich Low_complexity Low_complexity 1 58 0 338 21 0 42 chrX 40917764 40917812 -121682118 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 353 229 67 29 chrX 40918565 40918670 -121681260 + MIR3 SINE MIR 88 196 -12 315 345 84 51 chrX 40919163 40919459 -121680471 - L2 LINE L2 -5 3267 2962 264 30 0 0 chrX 40920775 40920808 -121679122 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 557 258 157 0 chrX 40921315 40921474 -121678456 - MER5A DNA MER1_type -3 186 3 2147 130 0 3 chrX 40922230 40922529 -121677401 - AluSx SINE Alu -14 298 1 1656 164 66 11 chrX 40922652 40923018 -121676912 + MER58D DNA MER1_type 1 386 0 23 33 0 0 chrX 40923179 40923209 -121676721 + AT_rich Low_complexity Low_complexity 1 30 0 227 256 47 12 chrX 40924344 40924430 -121675500 + MIR3 SINE MIR 95 183 -25 924 229 57 0 chrX 40924931 40925158 -121674772 - MIR SINE MIR -21 241 2 7295 203 81 29 chrX 40925563 40927304 -121672626 - L1MD2 LINE L1 -470 5889 3961 2372 99 0 0 chrX 40927304 40927607 -121672323 + AluY SINE Alu 3 305 -6 7295 203 81 29 chrX 40927607 40928500 -121671430 - L1MD2 LINE L1 -2398 3961 3115 567 236 113 57 chrX 40929576 40929805 -121670125 + MIR SINE MIR 20 261 -1 969 219 21 39 chrX 40930065 40930298 -121669632 - MER106A DNA MER1_type -1 235 7 899 171 0 151 chrX 40930312 40930570 -121669360 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chrX 40932417 40932446 -121667484 + AT_rich Low_complexity Low_complexity 1 29 0 2430 86 0 19 chrX 40932911 40933225 -121666705 + AluSx SINE Alu 1 308 -4 405 0 0 0 chrX 40933501 40933546 -121666384 + (T)n Simple_repeat Simple_repeat 1 45 0 1317 130 128 185 chrX 40934110 40934624 -121665306 - MER31A LTR ERV1 0 485 1 229 233 63 107 chrX 40934624 40934830 -121665100 + L1MC4 LINE L1 7829 8025 -17 380 275 192 6 chrX 40935334 40935501 -121664429 - MIR SINE MIR -18 244 47 1486 268 70 78 chrX 40935738 40936189 -121663741 - MLT1G LTR MaLR -88 507 20 329 259 12 0 chrX 40936362 40936447 -121663483 + L2 LINE L2 3185 3270 -2 202 73 49 0 chrX 40938458 40938499 -121661431 + A-rich Low_complexity Low_complexity 4 46 0 203 256 0 0 chrX 40938836 40938879 -121661051 + (TG)n Simple_repeat Simple_repeat 2 44 0 305 315 11 0 chrX 40939208 40939300 -121660630 - L2 LINE L2 0 3313 3221 1684 152 34 14 chrX 40939549 40939845 -121660085 - AluJo SINE Alu -10 302 1 1897 151 143 8 chrX 40939925 40940302 -121659628 - MSTA LTR MaLR 0 428 1 2326 98 0 0 chrX 40940308 40940605 -121659325 + AluSx SINE Alu 1 297 -15 417 159 0 0 chrX 40940655 40940724 -121659206 - MLT1E2 LTR MaLR -2 624 556 819 154 23 0 chrX 40940728 40940858 -121659072 - AluJb SINE Alu -179 133 1 1012 197 325 38 chrX 40940858 40941148 -121658782 - MLT1E2 LTR MaLR -52 574 368 2294 111 0 13 chrX 40941148 40941455 -121658475 - AluSx SINE Alu -9 303 1 1012 197 325 38 chrX 40941455 40941610 -121658320 - MLT1E2 LTR MaLR -258 368 1 316 208 0 0 chrX 40941939 40941992 -121657938 + L2 LINE L2 3242 3294 -19 2504 210 157 39 chrX 40942402 40943140 -121656790 - MER21B LTR ERV1 -27 836 12 620 227 20 7 chrX 40943162 40943312 -121656618 - MIR SINE MIR -80 182 31 1787 160 11 3 chrX 40946423 40946744 -121653186 - AluJb SINE Alu 0 323 1 408 211 55 0 chrX 40946831 40946940 -121652990 - L1ME3A LINE L1 -10 6094 5980 1263 141 6 0 chrX 40946946 40947123 -121652807 + AluJb SINE Alu 1 178 -134 2144 208 51 12 chrX 40947164 40947924 -121652006 - L1ME3A LINE L1 -143 5961 5106 2260 118 0 0 chrX 40947924 40948221 -121651709 - AluSx SINE Alu -15 297 1 2144 208 51 12 chrX 40948221 40948376 -121651554 - L1ME3A LINE L1 -998 5106 4959 304 230 86 58 chrX 40948797 40948936 -121650994 - L1ME3A LINE L1 -5887 183 41 946 238 102 85 chrX 40949542 40950245 -121649685 + HAL1 LINE L1 968 1682 -825 1557 146 51 67 chrX 40950529 40950844 -121649086 - AluJb SINE Alu -2 310 1 267 103 0 0 chrX 40951204 40951243 -121648687 + (TA)n Simple_repeat Simple_repeat 2 40 0 2493 77 0 0 chrX 40951542 40951840 -121648090 + AluSc SINE Alu 1 298 -11 1239 151 0 47 chrX 40952274 40952371 -121647559 + MER20 DNA MER1_type 18 118 -101 2512 120 6 6 chrX 40952371 40952737 -121647193 + MER47A DNA MER2_type 1 366 0 1239 151 0 47 chrX 40952737 40952851 -121647079 + MER20 DNA MER1_type 118 219 0 2612 65 3 0 chrX 40953928 40954237 -121645693 - AluSg SINE Alu 0 310 1 232 221 156 0 chrX 40954237 40954314 -121645616 + MIR SINE MIR 114 202 -60 228 300 70 0 chrX 40954733 40954833 -121645097 - MIR SINE MIR -69 139 33 2112 121 7 0 chrX 40956847 40957137 -121642793 - AluSx SINE Alu -20 292 1 2191 102 0 3 chrX 40957146 40957464 -121642466 - AluSg SINE Alu 0 317 1 2280 127 0 0 chrX 40957937 40958245 -121641685 + AluSq SINE Alu 1 308 -5 2199 108 0 3 chrX 40960714 40961009 -121638921 - AluSg SINE Alu -16 294 1 1777 67 0 9 chrX 40961662 40961887 -121638043 - AluSg/x SINE Alu 0 312 90 430 160 0 0 chrX 40962062 40962137 -121637793 + MER116 DNA Mariner 1 75 -5 2052 152 3 0 chrX 40962151 40962448 -121637482 + AluJb SINE Alu 1 298 -14 201 74 0 0 chrX 40962827 40962854 -121637076 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2177 92 0 7 chrX 40962993 40963326 -121636604 - AluSg SINE Alu 0 331 1 402 287 35 46 chrX 40964263 40964437 -121635493 - MER5B DNA MER1_type 0 178 7 1132 188 9 39 chrX 40967552 40967781 -121632149 + MER58A DNA MER1_type 3 224 0 2218 94 0 30 chrX 40967816 40968113 -121631817 + AluSx SINE Alu 1 288 -24 28 29 0 0 chrX 40968691 40968726 -121631204 + AT_rich Low_complexity Low_complexity 1 35 0 2242 120 0 3 chrX 40969919 40970219 -121629711 - AluSx SINE Alu -13 299 1 2359 124 122 20 chrX 40970255 40970657 -121629273 - LTR47B LTR ERVL 0 443 1 2363 84 7 0 chrX 40970731 40971027 -121628903 - AluSx SINE Alu -14 298 1 6523 204 93 26 chrX 40971036 40972338 -121627592 + L1MD2 LINE L1 18 1232 -5308 2033 117 13 0 chrX 40972338 40972637 -121627293 - AluSx SINE Alu -9 303 1 6523 204 93 26 chrX 40972637 40974220 -121625710 + L1MD2 LINE L1 1232 3624 -2916 1982 138 26 0 chrX 40974220 40974525 -121625405 + AluSq SINE Alu 1 313 0 6523 204 93 26 chrX 40974525 40974819 -121625111 + L1MD2 LINE L1 3624 3897 -2643 2717 72 3 8 chrX 40974821 40975183 -121624747 + L1PA8 LINE L1 5813 6172 0 2260 95 0 0 chrX 40975208 40975513 -121624417 + AluSx SINE Alu 1 305 -7 4167 172 40 25 chrX 40975513 40976350 -121623580 + L1MD2 LINE L1 5868 6720 -33 1479 139 46 4 chrX 40976350 40976588 -121623342 - AluJo SINE Alu -64 248 1 4167 172 40 25 chrX 40976588 40976623 -121623307 + L1MD2 LINE L1 6720 6753 0 2097 95 0 3 chrX 40977319 40977602 -121622328 - AluSx SINE Alu -16 296 15 2360 82 3 0 chrX 40979848 40980151 -121619779 + AluSp SINE Alu 1 304 -9 1892 115 11 7 chrX 40980838 40981124 -121618806 + AluSx SINE Alu 1 287 -25 2131 119 7 0 chrX 40981293 40981603 -121618327 + AluSx SINE Alu 1 312 0 2289 80 10 0 chrX 40982328 40982627 -121617303 - AluSp SINE Alu -11 302 1 2678 112 40 5 chrX 40982854 40983284 -121616646 + L1MA4A LINE L1 5854 6298 -5 437 264 146 47 chrX 40984415 40984859 -121615071 + L1MC4a LINE L1 5444 5931 -1877 2292 76 3 0 chrX 40984988 40985279 -121614651 + AluSp SINE Alu 1 292 -21 2302 79 0 0 chrX 40985316 40985607 -121614323 - AluSg SINE Alu -19 291 1 23 0 0 0 chrX 40985608 40985631 -121614299 + AT_rich Low_complexity Low_complexity 1 23 0 2173 114 0 0 chrX 40985631 40985930 -121614000 - AluSx SINE Alu -13 299 1 256 328 12 9 chrX 40985931 40986038 -121613892 - MIR3 SINE MIR -41 167 60 2363 70 0 7 chrX 40986525 40986824 -121613106 + AluSc SINE Alu 1 297 -12 1679 172 0 23 chrX 40986877 40987180 -121612750 - AluJo SINE Alu -16 296 1 649 207 108 64 chrX 40987745 40987817 -121612113 + MLT1L LTR MaLR 62 129 -486 792 192 0 101 chrX 40987817 40988015 -121611915 + MER5B DNA MER1_type 1 178 0 649 207 108 64 chrX 40988015 40988145 -121611785 + MLT1L LTR MaLR 129 273 -342 1174 157 35 101 chrX 40988157 40988443 -121611487 + AluJb SINE Alu 1 267 -45 865 195 6 12 chrX 40988445 40988609 -121611321 + AluJo/FRAM SINE Alu 140 302 0 448 250 125 0 chrX 40988692 40988820 -121611110 + MLT1L LTR MaLR 335 478 -137 369 252 118 31 chrX 40989169 40989296 -121610634 + MIR SINE MIR 20 157 -105 197 250 62 0 chrX 40989294 40989342 -121610588 + L2 LINE L2 3201 3251 -21 * 189 74 0 0 chrX 40989732 40989759 -121610171 + (A)n Simple_repeat Simple_repeat 1 27 0 330 176 10 39 chrX 40990657 40990759 -121609171 + GA-rich Low_complexity Low_complexity 6 104 0 262 293 109 7 chrX 40991035 40991182 -121608748 + L2 LINE L2 1204 1365 -1949 21 36 0 0 chrX 40991939 40991967 -121607963 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 40992404 40992439 -121607491 + GC_rich Low_complexity Low_complexity 1 35 0 258 175 0 70 chrX 40993663 40993745 -121606185 + MIR SINE MIR 102 174 -88 305 111 89 0 chrX 40993746 40993791 -121606139 + MLT1I LTR MaLR 354 402 -7 188 272 228 20 chrX 40994190 40994444 -121605486 + L2 LINE L2 852 1158 -2156 353 106 0 0 chrX 40994478 40994525 -121605405 + Alu SINE Alu 2 48 -254 341 256 142 61 chrX 40994547 40994793 -121605137 + L2 LINE L2 1217 1482 -1832 1591 136 28 35 chrX 40994887 40995174 -121604756 - AluJb SINE Alu -27 285 1 290 291 165 19 chrX 40995395 40995601 -121604329 + MLT1H LTR MaLR 119 354 -195 236 227 350 21 chrX 40995650 40995703 -121604227 - MER5A DNA MER1_type 0 189 155 1913 146 0 10 chrX 40995703 40996011 -121603919 + AluJb SINE Alu 1 305 -7 236 227 350 21 chrX 40996011 40996054 -121603876 - MER5A DNA MER1_type -34 155 61 1138 117 174 103 chrX 40996081 40996247 -121603683 - AluJo SINE Alu 0 302 106 2403 67 0 0 chrX 40996247 40996544 -121603386 + AluSg SINE Alu 1 297 -13 1138 117 174 103 chrX 40996544 40996659 -121603271 - AluJo SINE Alu -196 106 1 391 176 29 0 chrX 40996659 40996727 -121603203 - MER5A DNA MER1_type -111 78 9 211 189 0 0 chrX 40997486 40997523 -121602407 + CT-rich Low_complexity Low_complexity 2 38 0 267 261 92 0 chrX 40997553 40997618 -121602312 - MER91A DNA MER1_type 0 196 126 317 312 46 9 chrX 40997643 40997752 -121602178 - MER91A DNA MER1_type -42 154 42 299 325 19 34 chrX 40997753 40997875 -121602055 + L2 LINE L2 1709 1828 -1486 4766 76 40 9 chrX 40997875 40998109 -121601821 + PABL_B LTR ERV1 1 226 -441 2172 92 14 0 chrX 40998109 40998402 -121601528 + AluSx SINE Alu 3 299 -13 4766 76 40 9 chrX 40998402 40998814 -121601116 + PABL_B LTR ERV1 226 667 0 299 325 19 34 chrX 40998814 40998897 -121601033 + L2 LINE L2 1828 1911 -1403 810 210 0 34 chrX 40998919 40999095 -121600835 - AluJo SINE Alu -140 172 3 258 197 49 0 chrX 40999097 40999158 -121600772 + L2 LINE L2 1907 1970 -1344 251 330 64 0 chrX 40999187 40999296 -121600634 + L2 LINE L2 1957 2072 -1242 541 203 70 63 chrX 40999358 40999516 -121600414 + MIR SINE MIR 31 189 -73 405 0 0 0 chrX 40999516 40999561 -121600369 + (TA)n Simple_repeat Simple_repeat 2 46 0 1768 141 121 10 chrX 40999562 40999875 -121600055 + MER7A DNA MER2_type 1 346 0 347 0 23 0 chrX 40999876 40999919 -121600011 + (TG)n Simple_repeat Simple_repeat 2 45 0 714 291 221 22 chrX 41000039 41000413 -121599517 + L2 LINE L2 2227 2704 -610 1748 158 24 0 chrX 41000413 41000705 -121599225 - AluJb SINE Alu -13 299 1 714 291 221 22 chrX 41000705 41000774 -121599156 + L2 LINE L2 2704 2758 -556 282 270 0 0 chrX 41000838 41000901 -121599029 + L2 LINE L2 3249 3311 -2 336 48 0 0 chrX 41001221 41001263 -121598667 + (TC)n Simple_repeat Simple_repeat 2 43 0 1620 189 0 0 chrX 41001263 41001543 -121598387 - AluJb SINE Alu -32 280 1 360 259 67 37 chrX 41001711 41001846 -121598084 - L2 LINE L2 -4 3309 3171 2012 92 25 0 chrX 41001944 41002226 -121597704 + AluSx SINE Alu 1 289 -23 413 62 15 0 chrX 41002242 41002307 -121597623 + (TC)n Simple_repeat Simple_repeat 2 67 0 303 355 8 8 chrX 41002434 41002555 -121597375 - L1M4 LINE L1 -1465 4681 4561 377 200 55 27 chrX 41002564 41002674 -121597256 - MLT1D LTR MaLR -381 124 12 1400 195 20 37 chrX 41002682 41002712 -121597218 + L1M4 LINE L1 4375 4404 -1742 2054 131 0 0 chrX 41002712 41003018 -121596912 + AluSx SINE Alu 1 306 -6 1400 195 20 37 chrX 41003018 41003509 -121596421 + L1M4 LINE L1 4404 5011 -1135 1725 144 17 30 chrX 41003509 41003807 -121596123 + AluJb SINE Alu 1 294 -18 1400 195 20 37 chrX 41003807 41004121 -121595809 + L1M4 LINE L1 5011 5329 -817 2572 42 0 0 chrX 41005582 41005889 -121594041 + AluY SINE Alu 1 307 -4 3539 199 79 25 chrX 41005909 41006846 -121593084 + L1ME1 LINE L1 5186 6166 0 1689 218 34 53 chrX 41006980 41007039 -121592891 - LTR16A LTR ERVL -2 448 389 1635 118 0 0 chrX 41007039 41007268 -121592662 - AluSg/x SINE Alu -9 303 75 1689 218 34 53 chrX 41007268 41007644 -121592286 - LTR16A LTR ERVL -61 389 21 1804 118 3 20 chrX 41007937 41008234 -121591696 - AluJo SINE Alu -20 292 1 220 300 58 96 chrX 41008505 41008680 -121591250 + L2 LINE L2 2064 2244 -1070 2108 103 0 0 chrX 41008680 41008961 -121590969 + AluSq SINE Alu 1 281 -32 220 300 58 96 chrX 41008961 41009411 -121590519 + L2 LINE L2 2244 2665 -649 186 387 0 0 chrX 41009658 41009733 -121590197 + L2 LINE L2 2896 2970 -302 2076 117 0 7 chrX 41009860 41010158 -121589772 + AluSx SINE Alu 1 296 -16 849 145 0 0 chrX 41010497 41010621 -121589309 - FLAM_C SINE Alu -9 124 1 2133 84 3 7 chrX 41010770 41011054 -121588876 - AluSx SINE Alu -11 301 19 348 133 0 33 chrX 41011158 41011213 -121588717 - U3 snRNA snRNA -149 68 15 1734 169 16 3 chrX 41011213 41011520 -121588410 + AluJb SINE Alu 2 312 0 1807 86 124 0 chrX 41011944 41012211 -121587719 - AluSx SINE Alu -10 302 3 4401 147 32 4 chrX 41012350 41013042 -121586888 + MER50 LTR ERV1 1 711 -23 3918 109 79 60 chrX 41013043 41013106 -121586824 - LTR8A LTR ERV1 -19 708 648 2038 127 0 17 chrX 41013106 41013244 -121586686 + AluSx SINE Alu 1 140 -172 2022 128 3 0 chrX 41013244 41013533 -121586397 + AluSx SINE Alu 1 290 -22 2038 127 0 17 chrX 41013533 41013694 -121586236 + AluSx SINE Alu 140 295 -17 3918 109 79 60 chrX 41013694 41014117 -121585813 - LTR8A LTR ERV1 -79 648 203 2250 90 0 0 chrX 41014117 41014417 -121585513 - AluSx SINE Alu -12 300 1 3918 109 79 60 chrX 41014417 41014624 -121585306 - LTR8A LTR ERV1 -524 203 1 237 136 23 0 chrX 41014646 41014690 -121585240 - L1M4 LINE L1 -913 5233 5189 2139 169 43 102 chrX 41014696 41015252 -121584678 + MER4E LTR ERV1 1 523 -256 1951 110 11 0 chrX 41015262 41015544 -121584386 + AluSx SINE Alu 1 285 -27 30 32 0 48 chrX 41015625 41015650 -121584280 + AT_rich Low_complexity Low_complexity 1 26 -34 2220 92 0 0 chrX 41015650 41015942 -121583988 - AluSc SINE Alu -17 292 1 30 32 0 48 chrX 41015942 41015979 -121583951 + AT_rich Low_complexity Low_complexity 26 60 0 1677 174 0 7 chrX 41016181 41016474 -121583456 - AluJo SINE Alu -21 291 1 1958 122 125 12 chrX 41016531 41016866 -121583064 - MER83C LTR ERV1 0 373 1 390 291 139 40 chrX 41016868 41017132 -121582798 - L1M4 LINE L1 -1299 4847 4544 2275 55 17 3 chrX 41017132 41017422 -121582508 - AluY SINE Alu -17 294 1 390 291 139 40 chrX 41017422 41017480 -121582450 - L1M4 LINE L1 -1602 4544 4493 1125 150 0 95 chrX 41017710 41017905 -121582025 + L1MA9 LINE L1 5853 6020 -292 1913 142 0 3 chrX 41017905 41018201 -121581729 - AluSx SINE Alu -17 295 1 1125 150 0 95 chrX 41018201 41018258 -121581672 + L1MA9 LINE L1 6020 6081 -231 296 143 89 0 chrX 41018260 41018316 -121581614 + L1MA9 LINE L1 6180 6240 -72 1254 186 16 65 chrX 41018775 41019098 -121580832 + AluJo SINE Alu 1 307 -5 2120 92 0 20 chrX 41019103 41019406 -121580524 + AluSq SINE Alu 1 297 -16 197 373 65 0 chrX 41019689 41019842 -121580088 - MIR SINE MIR 0 262 100 358 271 243 0 chrX 41021735 41021879 -121578051 - MIR SINE MIR -34 228 50 242 257 136 36 chrX 41021906 41022046 -121577884 + L2 LINE L2 3159 3312 -1 24 0 0 0 chrX 41023500 41023524 -121576406 + AT_rich Low_complexity Low_complexity 1 24 0 2375 100 0 10 chrX 41023629 41023940 -121575990 + AluSq SINE Alu 1 308 -5 1444 170 21 24 chrX 41024146 41024434 -121575496 - AluJo SINE Alu -5 307 21 283 277 183 34 chrX 41025306 41025495 -121574435 - L1MC4a LINE L1 -1850 5958 5799 2374 97 3 0 chrX 41025495 41025803 -121574127 - AluSp SINE Alu -4 309 1 2298 104 0 0 chrX 41025803 41026101 -121573829 - AluSq SINE Alu -15 298 1 283 277 183 34 chrX 41026101 41026145 -121573785 - L1MC4a LINE L1 -2008 5800 5689 323 241 224 23 chrX 41026301 41026475 -121573455 + L1M4 LINE L1 3580 3788 -2358 2495 54 0 0 chrX 41026622 41026920 -121573010 - AluY SINE Alu -13 298 1 946 208 38 9 chrX 41027067 41027279 -121572651 - MER20 DNA MER1_type -1 218 1 501 271 107 43 chrX 41027302 41027676 -121572254 - L1ME LINE L1 -312 5809 5460 2064 151 0 0 chrX 41027676 41027980 -121571950 - AluJb SINE Alu -8 304 1 1656 212 0 0 chrX 41027981 41028273 -121571657 - AluJb SINE Alu -20 292 1 501 271 107 43 chrX 41028273 41028356 -121571574 - L1ME LINE L1 -660 5461 5308 342 302 77 48 chrX 41028623 41028780 -121571150 + L1M4 LINE L1 4910 5078 -1068 2154 125 0 0 chrX 41028780 41029076 -121570854 - AluSx SINE Alu -16 296 1 342 302 77 48 chrX 41029076 41029166 -121570764 + L1M4 LINE L1 5078 5164 -982 183 277 62 31 chrX 41029350 41029415 -121570515 + L2 LINE L2 2425 2491 -823 2187 101 17 0 chrX 41029607 41029894 -121570036 - AluSx SINE Alu -20 292 1 1963 164 3 6 chrX 41030098 41030276 -121569654 - AluJb SINE Alu -2 310 132 2443 77 7 0 chrX 41030276 41030573 -121569357 - AluSc SINE Alu -10 299 1 1963 164 3 6 chrX 41030573 41030705 -121569225 - AluJb SINE Alu -180 132 1 319 260 160 13 chrX 41030706 41030856 -121569074 - L1ME LINE L1 -376 5745 5574 247 275 28 28 chrX 41031079 41031188 -121568742 - L1ME LINE L1 -468 5653 5545 2009 153 3 3 chrX 41031437 41031738 -121568192 + AluJb SINE Alu 1 301 -11 2228 128 0 0 chrX 41031842 41032148 -121567782 + AluSx SINE Alu 1 306 -6 1771 120 7 66 chrX 41032222 41032523 -121567407 + AluJb SINE Alu 1 283 -29 2379 85 58 33 chrX 41032610 41032975 -121566955 + THE1C LTR MaLR 2 375 0 225 0 0 0 chrX 41033028 41033053 -121566877 + (TA)n Simple_repeat Simple_repeat 2 26 0 1110 73 0 53 chrX 41033053 41033204 -121566726 - AluSg/x SINE Alu -12 298 156 1618 85 0 0 chrX 41033204 41033403 -121566527 - AluSx SINE Alu -113 199 1 2856 112 18 59 chrX 41033416 41033905 -121566025 - LTR8A LTR ERV1 0 727 183 1642 75 44 49 chrX 41033905 41034131 -121565799 - MER30 DNA MER1_type -1 229 5 2856 112 18 59 chrX 41034131 41034307 -121565623 - LTR8A LTR ERV1 -544 183 1 2431 70 6 10 chrX 41034686 41034998 -121564932 - AluSq SINE Alu -2 311 1 293 93 19 0 chrX 41035009 41035063 -121564867 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 2280 197 51 30 chrX 41035250 41035782 -121564148 - MER21B LTR ERV1 -20 843 301 805 191 6 19 chrX 41035784 41035946 -121563984 - AluJb SINE Alu -16 296 137 1812 149 33 13 chrX 41035953 41036255 -121563675 - MER21B LTR ERV1 -553 310 3 537 231 43 0 chrX 41036843 41036960 -121562970 + MER92C LTR ERV1 188 309 -245 255 277 124 62 chrX 41037105 41037197 -121562733 + L2 LINE L2 3085 3170 -102 2358 88 0 0 chrX 41037197 41037494 -121562436 - AluSg SINE Alu -13 297 1 255 277 124 62 chrX 41037494 41037578 -121562352 + L2 LINE L2 3170 3272 0 525 227 189 0 chrX 41037715 41037900 -121562030 + MIR SINE MIR 23 242 -20 238 291 108 58 chrX 41038782 41039023 -121560907 - HAL1 LINE L1 -974 1533 1281 5834 226 82 32 chrX 41039308 41039606 -121560324 - L1ME LINE L1 -570 5530 5248 2232 96 14 0 chrX 41039606 41039897 -121560033 - AluSx SINE Alu -16 296 2 5834 226 82 32 chrX 41039897 41040305 -121559625 - L1ME LINE L1 -852 5248 4862 1668 163 21 14 chrX 41040305 41040593 -121559337 + AluJb SINE Alu 1 290 -22 5834 226 82 32 chrX 41040593 41041239 -121558691 - L1ME LINE L1 -1238 4862 4249 2308 102 0 37 chrX 41041239 41041562 -121558368 - AluSp SINE Alu -2 311 1 5834 226 82 32 chrX 41041562 41041869 -121558061 - L1ME LINE L1 -1851 4249 3959 1832 172 3 0 chrX 41041869 41042154 -121557776 - AluJo SINE Alu -26 286 1 5834 226 82 32 chrX 41042154 41042170 -121557760 - L1ME LINE L1 -2141 3959 3945 1954 111 42 29 chrX 41042170 41042477 -121557453 - AluSq SINE Alu -2 311 1 5834 226 82 32 chrX 41042477 41042822 -121557108 - L1ME LINE L1 -2155 3945 3619 2112 137 3 0 chrX 41042822 41043122 -121556808 - AluSq SINE Alu -12 301 1 5834 226 82 32 chrX 41043122 41043254 -121556676 - L1ME LINE L1 -2481 3619 3495 2372 100 0 0 chrX 41043254 41043563 -121556367 + AluSg SINE Alu 1 309 -1 5834 226 82 32 chrX 41043563 41043752 -121556178 - L1ME LINE L1 -2605 3495 3083 627 240 150 65 chrX 41044031 41044204 -121555726 - L1ME3A LINE L1 -232 5938 5781 1744 190 7 0 chrX 41044204 41044499 -121555431 - AluJo SINE Alu -15 297 1 627 240 150 65 chrX 41044499 41044845 -121555085 - L1ME3A LINE L1 -389 5781 5375 2136 109 0 45 chrX 41044948 41045290 -121554640 - AluSx SINE Alu 0 328 1 1640 156 57 18 chrX 41045300 41045583 -121554347 - AluJb SINE Alu -13 299 6 2044 113 3 60 chrX 41045659 41045978 -121553952 - AluSx SINE Alu -11 301 1 1683 221 59 137 chrX 41046030 41046250 -121553680 - L1ME LINE L1 -3890 2190 1954 3376 150 35 25 chrX 41046250 41046458 -121553472 - L1MD1 LINE L1 -8 6234 6030 2245 102 10 0 chrX 41046458 41046763 -121553167 - AluSx SINE Alu -4 308 1 3376 150 35 25 chrX 41046763 41047155 -121552775 - L1MD1 LINE L1 -212 6030 5628 1683 221 59 137 chrX 41047155 41047247 -121552683 - L1ME LINE L1 -4126 1954 1856 2318 110 0 0 chrX 41047247 41047556 -121552374 - AluSx SINE Alu -2 310 2 954 0 8 24 chrX 41047556 41047680 -121552250 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 2067 121 4 0 chrX 41047680 41047961 -121551969 - AluSx SINE Alu -30 282 1 270 0 0 0 chrX 41047962 41047992 -121551938 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2187 67 0 54 chrX 41047992 41048289 -121551641 - AluY SINE Alu -30 281 1 762 203 8 0 chrX 41048291 41048419 -121551511 - FLAM_A SINE Alu -3 130 2 1683 221 59 137 chrX 41048419 41048874 -121551056 - L1ME LINE L1 -4222 1858 1369 1026 127 19 0 chrX 41048874 41049031 -121550899 - L1MA2 LINE L1 0 6304 6145 564 97 0 0 chrX 41049032 41049104 -121550826 - U6 snRNA snRNA -18 89 18 1683 221 59 137 chrX 41049104 41049825 -121550105 - L1ME LINE L1 -4710 1370 613 2322 91 6 25 chrX 41049849 41050168 -121549762 - AluSq SINE Alu 0 313 1 369 305 37 32 chrX 41050548 41050738 -121549192 - L1ME LINE L1 -5878 192 2 * 644 189 57 11 chrX 41050737 41050912 -121549018 - L1M4 LINE L1 -2985 3161 2979 394 209 23 70 chrX 41050913 41050976 -121548954 - L1MA10 LINE L1 -3 6331 6275 1817 164 17 7 chrX 41050976 41051269 -121548661 + AluJo SINE Alu 5 300 -12 394 209 23 70 chrX 41051269 41051334 -121548596 - L1MA10 LINE L1 -59 6275 6209 453 220 37 59 chrX 41051337 41051488 -121548442 - L1M4 LINE L1 -2505 3641 3488 2090 146 7 0 chrX 41051488 41051796 -121548134 - AluSx SINE Alu -2 310 1 453 220 37 59 chrX 41051796 41051903 -121548027 - L1M4 LINE L1 -2658 3488 3310 1829 165 3 13 chrX 41052790 41053099 -121546831 - AluJb SINE Alu -6 306 1 333 231 110 67 chrX 41053450 41053592 -121546338 - L1ME LINE L1 -682 5978 5844 2431 88 3 0 chrX 41053592 41053900 -121546030 - AluSc SINE Alu 0 309 1 333 231 110 67 chrX 41053900 41054103 -121545827 - L1ME LINE L1 -816 5844 5606 2282 100 0 10 chrX 41054103 41054404 -121545526 - AluSx SINE Alu -14 298 1 333 231 110 67 chrX 41054404 41054423 -121545507 - L1ME LINE L1 -1054 5606 5589 42 0 0 0 chrX 41054447 41054489 -121545441 + AT_rich Low_complexity Low_complexity 1 42 0 1963 87 0 15 chrX 41054543 41054807 -121545123 - AluSx SINE Alu -52 260 1 2163 125 3 0 chrX 41054844 41055141 -121544789 - AluSq SINE Alu -15 298 1 759 289 108 25 chrX 41055207 41055771 -121544159 - L1ME LINE L1 -1476 5168 4558 627 218 42 36 chrX 41055798 41055963 -121543967 - MIR SINE MIR 0 262 97 536 236 64 81 chrX 41055970 41056062 -121543868 - L1ME LINE L1 -2098 4546 4454 2320 105 0 6 chrX 41056062 41056376 -121543554 - AluSx SINE Alu 0 312 1 536 236 64 81 chrX 41056376 41056580 -121543350 - L1ME LINE L1 -2190 4454 4255 8320 17 0 0 chrX 41056583 41057956 -121541974 - L1PA3 LINE L1 -1 6154 4780 4034 13 0 2 chrX 41057956 41058413 -121541517 + L1P LINE L1 4191 4646 -1500 399 281 78 22 chrX 41058424 41058655 -121541275 - L1ME LINE L1 -2383 4261 4018 546 243 32 0 chrX 41059243 41059373 -121540557 + MER2 DNA MER2_type 1 143 -96 402 197 0 0 chrX 41059364 41059425 -121540505 + MER2 DNA MER2_type 285 345 0 * 1605 262 134 24 chrX 41059427 41059516 -121540414 - HAL1 LINE L1 -375 2132 2054 1691 162 3 43 chrX 41059516 41059818 -121540112 - AluJo SINE Alu -22 290 1 1605 262 134 24 chrX 41059818 41060384 -121539546 - HAL1 LINE L1 -453 2054 1405 558 270 34 27 chrX 41060410 41060638 -121539292 - HERVL68 LTR ERVL -1798 1239 1075 528 198 269 18 chrX 41060638 41060805 -121539125 - MER68 LTR ERV1 -351 211 3 251 235 0 0 chrX 41060807 41060875 -121539055 - L1ME LINE L1 -4598 2227 2160 787 223 75 81 chrX 41060894 41061076 -121538854 - L1ME LINE L1 -6185 357 176 2007 148 0 0 chrX 41061076 41061087 -121538843 - AluSq SINE Alu -21 292 282 243 0 0 0 chrX 41061087 41061114 -121538816 + (TG)n Simple_repeat Simple_repeat 1 27 0 2007 148 0 0 chrX 41061114 41061393 -121538537 - AluSq SINE Alu -30 283 2 787 223 75 81 chrX 41061393 41061555 -121538375 - L1ME LINE L1 -6366 176 15 2355 90 0 13 chrX 41061695 41062029 -121537901 + AluSg SINE Alu 1 310 0 2339 98 0 0 chrX 41062240 41062537 -121537393 + AluSq SINE Alu 1 297 -16 216 200 0 0 chrX 41062788 41062833 -121537097 + (TG)n Simple_repeat Simple_repeat 2 46 0 1379 135 5 10 chrX 41062834 41063042 -121536888 - AluJb SINE Alu -20 292 86 275 305 112 22 chrX 41063547 41063770 -121536160 - HAL1 LINE L1 -838 1669 1427 662 260 23 34 chrX 41063923 41064100 -121535830 - MER68 LTR ERV1 -4 558 384 256 230 50 60 chrX 41064167 41064267 -121535663 - MER68 LTR ERV1 -202 360 262 2477 79 0 0 chrX 41064554 41064857 -121535073 - AluSg SINE Alu -7 303 1 231 114 0 0 chrX 41065195 41065230 -121534700 + (CA)n Simple_repeat Simple_repeat 2 36 0 1733 178 7 16 chrX 41067415 41067719 -121532211 + AluJb SINE Alu 1 301 -11 701 202 0 16 chrX 41067753 41067877 -121532053 - FLAM_C SINE Alu -15 128 7 2126 102 0 36 chrX 41067974 41068278 -121531652 - AluSq SINE Alu -18 295 3 689 86 0 11 chrX 41069320 41069413 -121530517 + Tigger2a DNA MER2_type 2 93 -341 * 1054 131 13 0 chrX 41069411 41069564 -121530366 + THE1B LTR MaLR 210 364 0 1911 166 7 0 chrX 41069884 41070186 -121529744 + AluJo SINE Alu 1 304 -8 892 299 53 19 chrX 41070561 41070628 -121529302 - HERVL LTR ERVL -2332 3322 3259 2623 111 8 24 chrX 41070628 41070998 -121528932 + THE1B LTR MaLR 1 364 0 892 299 53 19 chrX 41070998 41071251 -121528679 - HERVL LTR ERVL -2395 3259 2991 671 296 36 8 chrX 41071250 41071575 -121528355 - HERVL LTR ERVL -2338 3316 2948 * 597 254 113 17 chrX 41071594 41071771 -121528159 - HERVL LTR ERVL -2559 2437 2244 * 1223 293 20 6 chrX 41071765 41072123 -121527807 - HERVL LTR ERVL -2946 2050 1688 273 214 86 0 chrX 41072195 41072257 -121527673 + L1M1 LINE L1 2337 2404 -5161 1315 177 48 61 chrX 41072257 41072375 -121527555 + AluJo SINE Alu 1 119 -183 453 62 0 0 chrX 41072375 41072440 -121527490 + (CA)n Simple_repeat Simple_repeat 2 66 0 1315 177 48 61 chrX 41072440 41072481 -121527449 + AluJo SINE Alu 119 159 -143 360 0 0 0 chrX 41072481 41072521 -121527409 + (CA)n Simple_repeat Simple_repeat 2 41 0 1315 177 48 61 chrX 41072521 41072654 -121527276 + AluJo SINE Alu 159 290 -12 709 199 21 43 chrX 41072678 41072864 -121527066 - L1M4 LINE L1 -2073 4073 3892 1808 176 7 0 chrX 41072866 41073162 -121526768 - AluJo SINE Alu -14 298 1 773 183 23 15 chrX 41073164 41073295 -121526635 - AluJo/FLAM SINE Alu -179 133 2 286 289 22 30 chrX 41073296 41073431 -121526499 - L1MEc LINE L1 -4757 1639 1506 1225 305 61 65 chrX 41073487 41073780 -121526150 - L1MEc LINE L1 -5485 911 618 6675 64 32 0 chrX 41073780 41074665 -121525265 - L1PA8A LINE L1 -1 6130 5213 1225 305 61 65 chrX 41074665 41075260 -121524670 - L1MEc LINE L1 -5778 618 27 374 271 112 34 chrX 41075265 41075604 -121524326 - L1MDb LINE L1 -4989 1420 1162 1788 225 81 45 chrX 41075722 41075787 -121524143 - MLT1E2 LTR MaLR 0 626 565 2117 126 10 7 chrX 41075787 41076080 -121523850 - AluSx SINE Alu -18 294 1 1788 225 81 45 chrX 41076080 41076583 -121523347 - MLT1E2 LTR MaLR -61 565 60 4041 105 8 12 chrX 41076595 41077183 -121522747 + MER11C LTR ERVK 472 1057 -14 2421 103 0 3 chrX 41077200 41077529 -121522401 + HERVK11 LTR ERVK 1 328 -7625 * 4358 113 32 5 chrX 41077517 41078146 -121521784 + HERVK11 LTR ERVK 206 851 -7102 3155 83 38 5 chrX 41078146 41078738 -121521192 + HERVK11 LTR ERVK 1165 2710 -5243 * 8451 34 2 0 chrX 41078720 41079691 -121520239 + HERVK11 LTR ERVK 2912 3884 -4069 1013 107 0 0 chrX 41079665 41079805 -121520125 + HERVK11 LTR ERVK 4462 4601 -3352 * 3317 37 92 2 chrX 41079803 41080372 -121519558 + HERVK11 LTR ERVK 5525 6230 -1723 37464 87 17 13 chrX 41080373 41082203 -121517727 + L1PA6 LINE L1 14 1836 -4318 2248 102 3 3 chrX 41082203 41082497 -121517433 - AluY SINE Alu -17 294 1 37464 87 17 13 chrX 41082497 41084853 -121515077 + L1PA6 LINE L1 1836 4231 -1923 3900 104 4 4 chrX 41084853 41085364 -121514566 + MER9 LTR ERVK 1 511 0 37464 87 17 13 chrX 41085364 41087282 -121512648 + L1PA6 LINE L1 4231 6141 -13 258 143 0 0 chrX 41087291 41087340 -121512590 + (A)n Simple_repeat Simple_repeat 1 49 0 2426 65 14 140 chrX 41087340 41087429 -121512501 - THE1C-int LTR MaLR -1205 375 276 2044 130 7 13 chrX 41087429 41087737 -121512193 - AluSx SINE Alu -6 306 1 2426 65 14 140 chrX 41087737 41088076 -121511854 - THE1C-int LTR MaLR -1304 276 1 2717 91 16 42 chrX 41088076 41088461 -121511469 - THE1C LTR MaLR 0 375 1 682 132 0 0 chrX 41088463 41088554 -121511376 - AluJ/FLAM SINE Alu -220 92 2 1778 159 17 0 chrX 41088650 41088939 -121510991 + AluJo SINE Alu 5 298 -14 2278 104 0 0 chrX 41090849 41091147 -121508783 - AluSx SINE Alu -14 298 1 1714 167 11 0 chrX 41091954 41092249 -121507681 + AluJb SINE Alu 13 310 0 3636 161 34 29 chrX 41092395 41092929 -121507001 - MER44D DNA MER2_type -1882 605 194 2249 112 10 0 chrX 41092929 41093225 -121506705 + AluSx SINE Alu 1 299 -13 3636 161 34 29 chrX 41093225 41093307 -121506623 - MER44D DNA MER2_type -2293 194 114 232 287 66 22 chrX 41094305 41094441 -121505489 + L1MEd LINE L1 153 294 -5911 431 329 93 29 chrX 41094509 41094919 -121505011 + L1MEd LINE L1 388 823 -5382 * 3716 111 55 10 chrX 41094913 41095510 -121504420 + L1MC2 LINE L1 5653 6276 -68 2911 179 96 8 chrX 41095519 41096227 -121503703 + L1MEd LINE L1 2344 3113 -3102 2723 163 42 6 chrX 41096265 41096763 -121503167 + L1MD1 LINE L1 5727 6242 0 295 222 12 0 chrX 41096836 41096917 -121503013 + L1ME2 LINE L1 2193 2274 -4122 * 2799 222 55 40 chrX 41096913 41097797 -121502133 + L1ME2 LINE L1 3944 4844 -1371 1437 173 4 8 chrX 41097797 41098034 -121501896 - MER46A DNA MER2_type 0 236 1 2799 222 55 40 chrX 41098034 41098058 -121501872 + L1ME2 LINE L1 4844 4866 -1349 29 84 0 0 chrX 41098223 41098294 -121501636 + AT_rich Low_complexity Low_complexity 1 71 0 1767 133 23 53 chrX 41098327 41098627 -121501303 - AluJo SINE Alu -20 292 2 1930 195 157 31 chrX 41098683 41099301 -121500629 + L1ME2 LINE L1 4958 5497 -756 180 0 0 0 chrX 41099301 41099321 -121500609 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2137 120 0 7 chrX 41099326 41099610 -121500320 - AluSx SINE Alu -30 282 1 1930 195 157 31 chrX 41099610 41100135 -121499795 + L1ME2 LINE L1 5500 6253 0 467 176 92 13 chrX 41100577 41100730 -121499200 + L1MEd LINE L1 3143 3307 -2908 310 359 35 0 chrX 41101086 41101256 -121498674 - MER5A DNA MER1_type -1 188 3 627 246 155 5 chrX 41101312 41101519 -121498411 - MIR SINE MIR -12 250 13 279 288 240 7 chrX 41102452 41102598 -121497332 - MER5A DNA MER1_type 0 189 10 287 25 25 0 chrX 41103069 41103109 -121496821 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 340 309 110 31 chrX 41103149 41103340 -121496590 + HAL1 LINE L1 1328 1533 -974 363 222 81 0 chrX 41104235 41104334 -121495596 - MIR SINE MIR -121 141 35 2451 76 0 0 chrX 41104350 41104651 -121495279 - AluSg SINE Alu -9 301 1 302 235 143 34 chrX 41104792 41104911 -121495019 - L2 LINE L2 0 3272 3141 548 216 43 0 chrX 41105083 41105199 -121494731 - MER92C LTR ERV1 -246 308 188 1873 145 30 13 chrX 41105785 41106088 -121493842 + MER21B LTR ERV1 3 310 -553 778 195 6 19 chrX 41106095 41106254 -121493676 + AluJb SINE Alu 137 293 -19 1972 184 63 83 chrX 41106259 41106449 -121493481 + MER21B LTR ERV1 301 493 -370 2208 100 28 0 chrX 41106449 41106738 -121493192 - AluSp SINE Alu -16 297 1 1972 184 63 83 chrX 41106738 41107101 -121492829 + MER21B LTR ERV1 493 843 -20 2395 90 6 3 chrX 41107539 41107850 -121492080 - AluSx SINE Alu 0 312 1 364 264 181 21 chrX 41108094 41108287 -121491643 - L1ME LINE L1 -368 5753 5530 270 263 20 30 chrX 41108455 41108554 -121491376 - L1ME LINE L1 -2156 5652 5555 2116 106 11 0 chrX 41108802 41109118 -121490812 + AluSx SINE Alu 1 319 0 198 0 0 0 chrX 41109198 41109220 -121490710 + (A)n Simple_repeat Simple_repeat 1 22 0 261 208 49 28 chrX 41110452 41110596 -121489334 + (TTAA)n Simple_repeat Simple_repeat 2 148 0 1614 73 20 93 chrX 41111869 41112013 -121487917 + MER30 DNA MER1_type 1 121 -109 2532 68 10 0 chrX 41112013 41112320 -121487610 - AluSg SINE Alu 0 310 1 1614 73 20 93 chrX 41112320 41112423 -121487507 + MER30 DNA MER1_type 121 230 0 870 277 105 11 chrX 41113824 41114272 -121485658 + L1MC/D LINE L1 5308 5797 -2011 981 239 28 0 chrX 41114299 41114512 -121485418 + MER20 DNA MER1_type 1 219 0 210 71 0 0 chrX 41114592 41114620 -121485310 + (GA)n Simple_repeat Simple_repeat 2 29 0 1444 164 4 0 chrX 41114668 41114900 -121485030 + AluJb SINE Alu 72 304 -8 333 273 82 60 chrX 41114957 41115140 -121484790 - L1M4 LINE L1 -2367 3779 3593 230 312 150 16 chrX 41115299 41115546 -121484384 + L1MC4a LINE L1 5689 5968 -1840 206 151 0 38 chrX 41115829 41115844 -121484086 + GA-rich Low_complexity Low_complexity 3 17 -36 2361 92 10 0 chrX 41115844 41116149 -121483781 + AluSx SINE Alu 5 312 0 206 151 0 38 chrX 41116149 41116186 -121483744 + GA-rich Low_complexity Low_complexity 17 53 0 1900 141 34 0 chrX 41116785 41117082 -121482848 + AluJb SINE Alu 1 307 -5 23 0 0 0 chrX 41117386 41117409 -121482521 + AT_rich Low_complexity Low_complexity 1 23 0 328 286 95 16 chrX 41118866 41118992 -121480938 - L2 LINE L2 -1 3271 3136 428 288 159 0 chrX 41119043 41119206 -121480724 + MIR SINE MIR 60 248 -14 184 276 17 35 chrX 41121453 41121511 -121478419 + L2 LINE L2 3204 3260 -12 543 290 26 56 chrX 41123276 41123326 -121476604 - MIR SINE MIR -34 228 178 2187 96 3 0 chrX 41123326 41123618 -121476312 - AluSx SINE Alu -19 293 1 543 290 26 56 chrX 41123618 41123798 -121476132 - MIR SINE MIR -84 178 5 339 298 107 0 chrX 41123810 41123931 -121475999 - MIR3 SINE MIR -62 146 13 580 241 152 6 chrX 41123964 41124122 -121475808 - MER5A DNA MER1_type 0 189 9 318 67 0 0 chrX 41124203 41124248 -121475682 + (CA)n Simple_repeat Simple_repeat 2 46 0 318 277 139 15 chrX 41124270 41124407 -121475523 - MIR3 SINE MIR -36 172 19 236 216 34 57 chrX 41124880 41124968 -121474962 - MLT1J1 LTR MaLR -135 311 226 1600 186 118 17 chrX 41125569 41125924 -121474006 + MSTD LTR MaLR 6 396 0 1226 175 0 5 chrX 41125926 41126149 -121473781 + MSTD-int LTR MaLR 2 223 -1512 233 158 0 0 chrX 41126155 41126193 -121473737 - MSTA LTR MaLR -2 426 389 2044 138 0 10 chrX 41176720 41177018 -121422912 - AluJb SINE Alu -17 295 1 272 290 40 30 chrX 41177022 41177122 -121422808 + MIR SINE MIR 162 262 0 424 129 24 59 chrX 41177190 41177275 -121422655 + L1MC/D LINE L1 5710 5791 -542 1463 246 104 0 chrX 41177344 41177739 -121422191 + MLT1J2 LTR MaLR 7 442 -8 2032 148 0 7 chrX 41177894 41178197 -121421733 + AluJo SINE Alu 1 301 -11 1293 265 50 83 chrX 41178387 41179315 -121420615 - L1MC4 LINE L1 -1 8041 7145 314 287 113 22 chrX 41179744 41180064 -121419866 - L1MC4a LINE L1 -158 5963 5612 2399 60 0 11 chrX 41180070 41180381 -121419549 + AluY SINE Alu 1 308 0 518 264 139 10 chrX 41180576 41180777 -121419153 - MIR SINE MIR -6 256 30 321 186 0 0 chrX 41181671 41181741 -121418189 + GA-rich Low_complexity Low_complexity 1 70 0 2242 99 20 0 chrX 41181917 41182210 -121417720 + AluSg1 SINE Alu 1 299 -10 32 0 0 0 chrX 41182360 41182392 -121417538 + AT_rich Low_complexity Low_complexity 1 32 0 387 143 78 0 chrX 41182747 41182824 -121417106 + L1MA9 LINE L1 6196 6278 -34 216 135 0 0 chrX 41185311 41185348 -121414582 + (CAG)n Simple_repeat Simple_repeat 1 37 0 36 40 0 0 chrX 41185518 41185568 -121414362 + GC_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chrX 41185616 41185652 -121414278 + GC_rich Low_complexity Low_complexity 1 36 0 1064 235 140 60 chrX 41187000 41187235 -121412695 + MLT1G1 LTR MaLR 1 216 -379 2221 106 0 0 chrX 41187235 41187517 -121412413 + AluSx SINE Alu 1 282 -30 192 97 0 0 chrX 41187520 41187551 -121412379 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1064 235 140 60 chrX 41187551 41187860 -121412070 + MLT1G1 LTR MaLR 217 593 -2 299 313 42 42 chrX 41187996 41188188 -121411742 + L1ME1 LINE L1 329 520 -5876 1756 176 0 17 chrX 41188612 41188907 -121411023 + AluJo SINE Alu 1 290 -22 2714 212 70 34 chrX 41189119 41189588 -121410342 + L1ME1 LINE L1 748 1198 -5208 2261 112 3 0 chrX 41189588 41189884 -121410046 + AluSg SINE Alu 1 297 -13 2714 212 70 34 chrX 41189884 41190447 -121409483 + L1ME1 LINE L1 1198 1770 -4636 5601 217 29 68 chrX 41190500 41191297 -121408633 + L1ME1 LINE L1 3935 4761 -1665 2087 120 17 0 chrX 41191297 41191589 -121408341 - AluSx SINE Alu -15 297 1 5601 217 29 68 chrX 41191589 41192928 -121407002 + L1ME1 LINE L1 4761 5939 -487 2299 117 0 0 chrX 41192928 41193228 -121406702 - AluSx SINE Alu -12 300 1 5601 217 29 68 chrX 41193228 41193692 -121406238 + L1ME1 LINE L1 5939 6420 -6 2225 116 3 0 chrX 41193908 41194211 -121405719 + AluSx SINE Alu 1 304 -8 700 227 92 26 chrX 41194280 41194552 -121405378 + LTR33A LTR ERVL 289 522 -1 585 283 57 28 chrX 41194699 41194911 -121405019 + MLT1I LTR MaLR 1 218 -191 242 327 77 18 chrX 41195058 41195226 -121404704 + L2 LINE L2 2871 3048 -224 1946 107 14 35 chrX 41195281 41195570 -121404360 - AluSx SINE Alu -21 291 9 291 182 18 0 chrX 41195760 41195815 -121404115 + L2 LINE L2 3217 3272 0 24 53 0 0 chrX 41195824 41195862 -121404068 + AT_rich Low_complexity Low_complexity 1 38 0 47 86 0 0 chrX 41196182 41196299 -121403631 + AT_rich Low_complexity Low_complexity 1 117 0 390 225 0 0 chrX 41197520 41197591 -121402339 - MLT1J LTR MaLR -331 180 110 1758 169 136 7 chrX 41197847 41198188 -121401742 + L1MB5 LINE L1 5803 6174 0 922 261 60 108 chrX 41198323 41198396 -121401534 + MLT1J LTR MaLR 1 76 -435 2487 87 3 0 chrX 41198396 41198707 -121401223 + AluSx SINE Alu 1 312 0 922 261 60 108 chrX 41198707 41199170 -121400760 + MLT1J LTR MaLR 76 511 0 5834 134 6 7 chrX 41199326 41200427 -121399503 + L1MB1 LINE L1 5067 6168 0 1644 190 74 36 chrX 41200633 41200781 -121399149 - MLT1B LTR MaLR -11 379 238 2388 99 0 0 chrX 41200781 41201075 -121398855 - AluSx SINE Alu -18 294 1 1644 190 74 36 chrX 41201075 41201290 -121398640 - MLT1B LTR MaLR -152 238 2 1467 207 81 83 chrX 41201537 41201995 -121397935 - MLT1H LTR MaLR -2 547 91 291 122 0 0 chrX 41202000 41202049 -121397881 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1105 83 0 18 chrX 41202050 41202219 -121397711 + (TTTC)n Simple_repeat Simple_repeat 4 169 0 1783 101 10 95 chrX 41202219 41202525 -121397405 - AluSx SINE Alu -32 280 1 228 133 0 0 chrX 41202525 41202555 -121397375 - MLT1H LTR MaLR -446 103 74 3422 129 36 91 chrX 41202756 41202868 -121397062 + MER41B LTR ERV1 1 118 -517 2310 95 7 0 chrX 41202868 41203164 -121396766 + AluSq SINE Alu 1 298 -15 3422 129 36 91 chrX 41203164 41203626 -121396304 + MER41B LTR ERV1 118 535 -100 1970 124 7 3 chrX 41203626 41203908 -121396022 - AluSq SINE Alu 0 313 31 3422 129 36 91 chrX 41203908 41204004 -121395926 + MER41B LTR ERV1 535 635 0 582 259 84 63 chrX 41204277 41204629 -121395301 + L2 LINE L2 2922 3284 -29 3330 68 35 11 chrX 41204629 41205083 -121394847 + MER4C LTR ERV1 1 465 0 582 259 84 63 chrX 41205083 41205109 -121394821 + L2 LINE L2 3284 3308 -5 1712 155 7 18 chrX 41205205 41205483 -121394447 + AluJb SINE Alu 1 275 -37 829 254 35 5 chrX 41205557 41205754 -121394176 + MIR SINE MIR 5 207 -55 616 24 0 24 chrX 41205906 41205990 -121393940 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 2112 127 0 0 chrX 41205990 41206273 -121393657 - AluSx SINE Alu -29 283 1 278 203 0 17 chrX 41206437 41206496 -121393434 - MLT1K LTR MaLR 0 588 531 876 268 100 48 chrX 41206540 41206961 -121392969 + LTR16A LTR ERVL 8 450 0 2444 168 28 76 chrX 41206969 41207546 -121392384 - MLT2B3 LTR ERVL -4 550 2 701 270 50 67 chrX 41207573 41207932 -121391998 - MLT1K LTR MaLR -109 479 127 1571 194 17 7 chrX 41208290 41208578 -121391352 + AluJb SINE Alu 1 291 -21 1720 144 18 89 chrX 41209069 41209396 -121390534 - AluJb SINE Alu -8 304 1 2437 87 3 0 chrX 41209746 41210045 -121389885 + AluSp SINE Alu 3 302 -11 32 0 0 0 chrX 41210277 41210309 -121389621 + AT_rich Low_complexity Low_complexity 1 32 0 1063 125 51 0 chrX 41210310 41210486 -121389444 - L1PB4 LINE L1 -12 6144 5960 909 150 0 92 chrX 41210898 41211071 -121388859 + FRAM SINE Alu 1 157 -9 1643 121 152 0 chrX 41211095 41211352 -121388578 + AluJb SINE Alu 1 296 -16 1458 159 12 0 chrX 41211473 41211725 -121388205 + L1MA8 LINE L1 6033 6287 -4 3625 98 74 53 chrX 41211834 41212078 -121387852 + L1MC1 LINE L1 5663 5900 -433 2319 97 3 0 chrX 41212078 41212378 -121387552 + AluSp SINE Alu 1 301 -12 3625 98 74 53 chrX 41212378 41212753 -121387177 + L1MC1 LINE L1 5900 6295 -38 849 119 0 0 chrX 41212753 41212871 -121387059 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chrX 41212873 41212896 -121387034 + AT_rich Low_complexity Low_complexity 1 23 0 583 159 19 234 chrX 41212907 41213066 -121386864 - L1M4 LINE L1 -2086 4060 3869 2209 100 0 4 chrX 41213066 41213347 -121386583 - AluSg SINE Alu -30 280 1 583 159 19 234 chrX 41213347 41213470 -121386460 - L1M4 LINE L1 -2277 3869 3868 2176 118 10 0 chrX 41213470 41213775 -121386155 - AluSx SINE Alu -4 308 1 583 159 19 234 chrX 41213775 41213850 -121386080 - L1M4 LINE L1 -2278 3868 3779 1042 220 57 29 chrX 41213875 41214225 -121385705 + L1M4 LINE L1 4120 4479 -1667 1298 273 47 41 chrX 41214414 41214755 -121385175 - MLT1H LTR MaLR -13 536 189 2213 98 19 7 chrX 41214755 41215062 -121384868 + AluSx SINE Alu 1 311 -1 1298 273 47 41 chrX 41215062 41215251 -121384679 - MLT1H LTR MaLR -360 189 3 2319 109 6 3 chrX 41215734 41216046 -121383884 - AluSq SINE Alu 0 313 1 1934 146 0 10 chrX 41216168 41216470 -121383460 + AluJb SINE Alu 1 299 -13 1368 301 39 5 chrX 41216816 41217228 -121382702 - LTR16A LTR ERVL 0 450 25 2155 125 0 3 chrX 41217324 41217619 -121382311 - AluSx SINE Alu -18 294 1 2177 89 10 26 chrX 41217827 41218129 -121381801 + AluSx SINE Alu 1 297 -15 2463 242 39 11 chrX 41218130 41218688 -121381242 + MLT1G LTR MaLR 17 590 0 248 258 155 0 chrX 41219910 41220007 -121379923 - MIR SINE MIR -99 163 52 1847 83 0 0 chrX 41220470 41220700 -121379230 - AluSg/x SINE Alu -4 308 79 1953 121 5 113 chrX 41220710 41220751 -121379179 - L1MB2 LINE L1 0 6171 6127 1545 157 34 44 chrX 41220751 41220944 -121378986 - AluJb SINE Alu -16 296 106 2135 104 0 4 chrX 41220944 41221223 -121378707 - AluSg SINE Alu -27 283 6 1545 157 34 44 chrX 41221223 41221323 -121378607 - AluJb SINE Alu -206 106 6 1953 121 5 113 chrX 41221323 41221445 -121378485 - L1MB2 LINE L1 -44 6127 5993 2422 101 0 0 chrX 41221445 41221751 -121378179 + AluSq SINE Alu 1 306 -7 1953 121 5 113 chrX 41221751 41222009 -121377921 - L1MB2 LINE L1 -178 5993 5836 2430 106 0 0 chrX 41222009 41222321 -121377609 - AluSq SINE Alu -1 312 1 1953 121 5 113 chrX 41222321 41222423 -121377507 - L1MB2 LINE L1 -335 5836 5725 2124 100 4 0 chrX 41222654 41222955 -121376975 - AluSx SINE Alu 0 302 1 2152 109 0 7 chrX 41223611 41223896 -121376034 - AluSx SINE Alu -29 283 1 37 23 0 0 chrX 41224299 41224343 -121375587 + AT_rich Low_complexity Low_complexity 1 44 0 2253 120 0 0 chrX 41224343 41224642 -121375288 + AluSx SINE Alu 1 299 -13 750 160 0 17 chrX 41224646 41224765 -121375165 - FLAM_C SINE Alu -16 117 1 2061 123 0 3 chrX 41224790 41225114 -121374816 - AluSx SINE Alu 0 323 1 2041 146 0 3 chrX 41225160 41225468 -121374462 + AluJo SINE Alu 1 307 -5 1922 149 3 27 chrX 41225628 41225924 -121374006 + AluSx SINE Alu 7 295 -17 2091 123 0 3 chrX 41225927 41226263 -121373667 + AluSp SINE Alu 1 335 0 208 186 198 35 chrX 41226533 41226619 -121373311 - MIR SINE MIR -18 244 145 1694 146 64 4 chrX 41226635 41226915 -121373015 - AluJo SINE Alu -15 297 1 315 272 160 0 chrX 41226999 41227124 -121372806 - MIR SINE MIR -112 150 6 2291 106 0 0 chrX 41227255 41227557 -121372373 + AluSp SINE Alu 1 302 -11 390 297 26 73 chrX 41227594 41227786 -121372144 + MLT1L LTR MaLR 1 183 -432 306 215 0 35 chrX 41227933 41228077 -121371853 + CT-rich Low_complexity Low_complexity 2 140 0 318 50 0 0 chrX 41228079 41228119 -121371811 + (CA)n Simple_repeat Simple_repeat 1 40 0 584 268 28 34 chrX 41228504 41228683 -121371247 - MER97b DNA MER1_type? -875 178 1 339 298 101 27 chrX 41228725 41228783 -121371147 - L1M4 LINE L1 -1314 4832 4780 592 200 200 15 chrX 41228783 41228918 -121371012 - FRAM SINE Alu -6 160 1 339 298 101 27 chrX 41228918 41229047 -121370883 - L1M4 LINE L1 -1366 4780 4631 32 0 0 0 chrX 41229175 41229207 -121370723 + AT_rich Low_complexity Low_complexity 1 32 0 2169 99 3 3 chrX 41229214 41229532 -121370398 - AluSg SINE Alu 0 318 1 1622 193 21 56 chrX 41229557 41229935 -121369995 + MLT1A1 LTR MaLR 1 365 0 2303 88 0 0 chrX 41229978 41230283 -121369647 - AluSq SINE Alu 0 305 1 592 274 116 9 chrX 41230393 41230608 -121369322 - L1MC4a LINE L1 -1834 5974 5737 496 185 0 67 chrX 41230626 41230745 -121369185 + L1ME1 LINE L1 5896 6006 -160 2166 96 0 46 chrX 41230768 41231070 -121368860 + AluSx SINE Alu 1 288 -24 284 258 0 0 chrX 41231071 41231137 -121368793 + L1MB7 LINE L1 6106 6171 -13 471 249 0 55 chrX 41231309 41231474 -121368456 + L2 LINE L2 3156 3311 -2 421 280 6 12 chrX 41231472 41231601 -121368329 - MER5A DNA MER1_type -41 139 8 * 979 216 104 49 chrX 41231689 41232179 -121367751 + MLT1H LTR MaLR 1 555 0 209 319 14 0 chrX 41232207 41232276 -121367654 + L2 LINE L2 2782 2851 -463 538 330 0 0 chrX 41232375 41232551 -121367379 + MIR SINE MIR 79 254 -8 335 213 113 81 chrX 41232564 41232724 -121367206 + L2 LINE L2 3149 3313 0 2362 98 0 0 chrX 41232934 41233241 -121366689 - AluSx SINE Alu -5 307 1 2235 108 7 16 chrX 41233250 41233557 -121366373 - AluSx SINE Alu -8 304 1 1729 176 3 19 chrX 41234216 41234528 -121365402 - AluJb SINE Alu -5 307 1 2128 137 0 0 chrX 41234549 41234849 -121365081 - AluSx SINE Alu -12 300 1 369 0 0 0 chrX 41234853 41234894 -121365036 + (TTG)n Simple_repeat Simple_repeat 2 42 0 559 238 14 7 chrX 41234922 41235069 -121364861 + L2 LINE L2 1793 1940 -1374 738 210 17 6 chrX 41235136 41235317 -121364613 - L1MD3 LINE L1 -1 7994 7812 2229 99 16 3 chrX 41235320 41235624 -121364306 + AluSq SINE Alu 1 308 -5 272 155 0 17 chrX 41235624 41235682 -121364248 + GA-rich Low_complexity Low_complexity 1 57 0 1491 187 102 67 chrX 41235786 41236188 -121363742 - L1MD2 LINE L1 -250 6109 5694 2973 175 35 10 chrX 41236189 41236878 -121363052 - L1ME LINE L1 -4767 1773 977 2149 115 41 44 chrX 41236878 41237243 -121362687 - THE1B LTR MaLR 0 364 1 2973 175 35 10 chrX 41237243 41237316 -121362614 - L1ME LINE L1 -5563 977 907 343 316 83 18 chrX 41237348 41237516 -121362414 - L1ME LINE L1 -5573 957 779 984 282 24 30 chrX 41237527 41237860 -121362070 - L1ME LINE L1 -6128 412 82 2056 138 0 0 chrX 41237865 41238163 -121361767 - AluJb SINE Alu -3 309 12 2031 290 98 6 chrX 41238282 41239204 -121360726 + L2 LINE L2 2127 3133 -180 676 268 170 53 chrX 41239204 41239311 -121360619 - MLT1H1 LTR MaLR 0 555 462 2320 94 3 0 chrX 41239311 41239609 -121360321 + AluSx SINE Alu 1 299 -13 676 268 170 53 chrX 41239609 41240025 -121359905 - MLT1H1 LTR MaLR -93 462 13 1901 158 0 0 chrX 41240071 41240388 -121359542 - AluJb SINE Alu 0 317 1 383 231 58 10 chrX 41240409 41240513 -121359417 + L2 LINE L2 3201 3309 -4 261 0 0 0 chrX 41240545 41240574 -121359356 + (CA)n Simple_repeat Simple_repeat 2 30 0 1666 160 32 21 chrX 41240673 41240955 -121358975 + AluJo SINE Alu 1 285 -27 2238 100 0 10 chrX 41241659 41241959 -121357971 + AluSq SINE Alu 1 297 -16 2277 115 0 10 chrX 41242790 41243103 -121356827 + AluSx SINE Alu 1 310 -2 2006 165 23 34 chrX 41243660 41244048 -121355882 - MLT1B LTR MaLR -3 387 4 1817 184 3 0 chrX 41244100 41244388 -121355542 - AluJo SINE Alu -23 289 1 668 250 121 0 chrX 41245043 41245267 -121354663 + MIR SINE MIR 12 262 0 22733 130 45 11 chrX 41245289 41247038 -121352892 + L1M1 LINE L1 1 1689 -5876 194 0 39 0 chrX 41247038 41247064 -121352866 + (GA)n Simple_repeat Simple_repeat 2 28 0 22733 130 45 11 chrX 41247064 41249067 -121350863 + L1M1 LINE L1 1689 3883 -3682 348 97 129 0 chrX 41249066 41249128 -121350802 + L1MA2 LINE L1 6046 6115 -189 * 2480 83 0 0 chrX 41249129 41249429 -121350501 - AluSq SINE Alu -13 300 1 363 189 27 0 chrX 41249430 41249504 -121350426 - L1ME LINE L1 -506 5615 5540 2172 181 136 51 chrX 41249851 41250160 -121349770 - REP3 LTR ERV 0 562 192 2078 133 0 10 chrX 41250160 41250494 -121349436 + AluSx SINE Alu 1 312 0 2172 181 136 51 chrX 41250494 41250692 -121349238 - REP3 LTR ERV -370 192 12 2021 129 0 14 chrX 41250736 41251031 -121348899 - AluJb SINE Alu -21 291 1 2211 103 3 28 chrX 41251079 41251302 -121348628 - AluSx SINE Alu 0 352 125 207 0 0 0 chrX 41251302 41251325 -121348605 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2050 131 3 0 chrX 41251325 41251607 -121348323 - AluSx SINE Alu -29 283 1 2211 103 3 28 chrX 41251607 41251742 -121348188 - AluSx SINE Alu -225 127 1 4787 148 8 14 chrX 41251749 41252445 -121347485 - L1 LINE L1 -1162 4984 4292 2015 149 0 13 chrX 41252445 41252754 -121347176 - AluJb SINE Alu -7 305 1 4787 148 8 14 chrX 41252754 41252904 -121347026 - L1 LINE L1 -1854 4292 4143 379 137 0 0 chrX 41253049 41253100 -121346830 - MER66B LTR ERV1 -142 344 294 430 261 29 71 chrX 41253346 41253528 -121346402 + MER69A DNA AcHobo 4 177 0 2204 81 7 21 chrX 41253606 41253891 -121346039 + AluSp SINE Alu 1 281 -32 1161 113 0 0 chrX 41253892 41254069 -121345861 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2272 107 0 0 chrX 41254555 41254900 -121345030 + AluSx SINE Alu 1 345 0 2260 101 0 16 chrX 41255069 41255377 -121344553 + AluSx SINE Alu 1 303 -9 374 132 0 15 chrX 41255381 41255449 -121344481 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 2160 109 3 3 chrX 41255503 41255797 -121344133 - AluSc SINE Alu -15 294 1 2056 128 0 7 chrX 41255831 41256128 -121343802 + AluSx SINE Alu 1 295 -17 2515 84 0 0 chrX 41256128 41256436 -121343494 + AluSc SINE Alu 1 309 0 545 107 0 24 chrX 41257129 41257213 -121342717 + AluJo/FLAM SINE Alu 52 133 -179 * 699 188 14 29 chrX 41257209 41257347 -121342583 + AluJo SINE Alu 96 231 -81 217 150 0 25 chrX 41257363 41257403 -121342527 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1671 149 23 50 chrX 41257429 41257572 -121342358 + AluJo SINE Alu 1 146 -166 2121 122 20 0 chrX 41257572 41257866 -121342064 + AluJb SINE Alu 1 300 -12 1671 149 23 50 chrX 41257866 41258024 -121341906 + AluJo SINE Alu 146 294 -18 957 207 67 74 chrX 41258130 41258594 -121341336 + MLT1H1 LTR MaLR 9 595 0 2130 132 0 3 chrX 41258747 41259050 -121340880 - AluSx SINE Alu -10 302 1 248 297 63 27 chrX 41260029 41260140 -121339790 + MIR SINE MIR 17 131 -77 24 32 0 0 chrX 41260212 41260243 -121339687 + AT_rich Low_complexity Low_complexity 1 31 0 2478 92 0 0 chrX 41260458 41260762 -121339168 + AluSx SINE Alu 1 304 -8 231 250 83 14 chrX 41261205 41261277 -121338653 - L2 LINE L2 0 3272 3196 2503 63 0 0 chrX 41261310 41261609 -121338321 - AluSg SINE Alu -11 299 1 2341 63 0 50 chrX 41261622 41261939 -121337991 - AluSc SINE Alu -8 301 1 2433 66 7 3 chrX 41261967 41262271 -121337659 + AluSq SINE Alu 1 305 -8 1633 118 17 88 chrX 41262402 41262698 -121337232 + AluJo SINE Alu 5 279 -33 593 0 28 0 chrX 41262698 41262770 -121337160 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 24 32 0 0 chrX 41265603 41265634 -121334296 + AT_rich Low_complexity Low_complexity 1 31 0 2014 156 0 0 chrX 41265638 41265946 -121333984 + AluJb SINE Alu 1 308 -4 2368 81 0 16 chrX 41266340 41266648 -121333282 - AluSx SINE Alu -9 303 1 1173 226 215 48 chrX 41267689 41268166 -121331764 - MLT1G1 LTR MaLR 0 595 1 421 95 0 0 chrX 41268214 41268277 -121331653 - L1MB8 LINE L1 -6 6172 6110 2057 119 14 7 chrX 41268298 41268583 -121331347 - AluSx SINE Alu -25 287 1 338 116 14 14 chrX 41268584 41268653 -121331277 - L1MA4 LINE L1 -248 6052 5984 1261 107 0 19 chrX 41268654 41268859 -121331071 + L1MA4 LINE L1 6094 6294 -6 3185 143 73 19 chrX 41268883 41269374 -121330556 - L1MB7 LINE L1 -57 6127 5597 2525 66 0 0 chrX 41269374 41269675 -121330255 - AluY SINE Alu -10 301 1 3185 143 73 19 chrX 41269675 41269769 -121330161 - L1MB7 LINE L1 -587 5597 5510 987 137 0 0 chrX 41270203 41270342 -121329588 - AluSq/x SINE Alu -173 139 1 21 57 0 0 chrX 41270470 41270505 -121329425 + AT_rich Low_complexity Low_complexity 1 35 0 7027 34 1 4 chrX 41270553 41271390 -121328540 - L1PA5 LINE L1 -6 6148 5316 4609 150 37 53 chrX 41271801 41272139 -121327791 - L1ME1 LINE L1 0 6166 5824 1869 156 3 10 chrX 41272139 41272434 -121327496 - AluJb SINE Alu -19 293 1 4609 150 37 53 chrX 41272434 41272665 -121327265 - L1ME1 LINE L1 -342 5824 5591 251 250 31 0 chrX 41272665 41272676 -121327254 + AluYb8 SINE Alu 124 136 -172 1906 142 6 22 chrX 41272676 41272992 -121326938 + AluJo SINE Alu 2 312 0 4609 150 37 53 chrX 41272729 41273100 -121326830 - L1ME1 LINE L1 -575 5591 5499 1666 165 3 24 chrX 41273100 41273397 -121326533 - AluJo SINE Alu -21 291 1 4609 150 37 53 chrX 41273397 41273802 -121326128 - L1ME1 LINE L1 -667 5499 5089 594 91 0 0 chrX 41273802 41273879 -121326051 - AluSc SINE Alu -14 295 219 329 195 0 13 chrX 41273880 41273957 -121325973 + (TA)n Simple_repeat Simple_repeat 1 76 0 286 293 0 14 chrX 41274025 41274172 -121325758 + (TA)n Simple_repeat Simple_repeat 2 146 0 245 214 0 0 chrX 41274172 41274228 -121325702 + L1MC4 LINE L1 6648 6703 -1339 * 265 194 0 42 chrX 41274197 41274269 -121325661 + L1MCa LINE L1 1996 2064 -4362 239 133 0 0 chrX 41274289 41274334 -121325596 - LTR66 LTR ERVL -172 438 394 615 219 45 19 chrX 41274335 41274490 -121325440 + MIR SINE MIR 83 241 -21 2432 81 3 0 chrX 41274742 41275052 -121324878 - AluSq SINE Alu -2 311 1 2053 136 0 3 chrX 41275115 41275410 -121324520 + AluJb SINE Alu 1 294 -18 1205 122 0 33 chrX 41275562 41275743 -121324187 - AluJb SINE Alu -18 294 120 456 256 33 25 chrX 41275794 41275915 -121324015 - FLAM_A SINE Alu -11 122 1 759 176 84 16 chrX 41276155 41276340 -121323590 + MLT1B LTR MaLR 1 188 -186 1167 122 17 6 chrX 41276415 41276587 -121323343 - MLT1A1 LTR MaLR -14 351 178 249 254 51 0 chrX 41277227 41277286 -121322644 + L2 LINE L2 3251 3312 -1 2266 105 3 0 chrX 41277723 41278018 -121321912 + AluSq SINE Alu 1 296 -17 2215 96 3 13 chrX 41278018 41278153 -121321777 + AluY SINE Alu 1 136 -175 1749 102 117 11 chrX 41278153 41278427 -121321503 + AluSc SINE Alu 1 303 -6 2215 96 3 13 chrX 41278427 41278593 -121321337 + AluY SINE Alu 136 299 -12 503 154 0 10 chrX 41278593 41278697 -121321233 + GA-rich Low_complexity Low_complexity 1 103 0 2155 126 0 0 chrX 41278942 41279251 -121320679 - AluSx SINE Alu -3 309 1 220 283 17 0 chrX 41279748 41279808 -121320122 + L2 LINE L2 3250 3310 -3 183 200 0 0 chrX 41280825 41280855 -121319075 - L2 LINE L2 -23 3290 3261 241 233 70 35 chrX 41280858 41280944 -121318986 + HsTC2 DNA Tc2 2 90 -1808 181 255 0 21 chrX 41280980 41281027 -121318903 - L2 LINE L2 -84 3229 3184 2183 109 0 10 chrX 41281140 41281434 -121318496 - AluSc SINE Alu -18 291 1 2329 88 3 0 chrX 41281841 41282135 -121317795 - AluSx SINE Alu -17 295 1 1080 226 33 0 chrX 41282785 41283028 -121316902 - MIR SINE MIR 0 262 12 2337 83 0 0 chrX 41283648 41283949 -121315981 + AluSg1 SINE Alu 1 301 -8 1832 150 3 11 chrX 41284843 41285129 -121314801 - AluJo SINE Alu -16 296 13 854 228 89 0 chrX 41285304 41285506 -121314424 + MIR SINE MIR 32 251 -11 1953 155 3 22 chrX 41285569 41285886 -121314044 + AluJo SINE Alu 1 311 -1 311 186 48 131 chrX 41285901 41286046 -121313884 - L1ME4a LINE L1 -246 5875 5743 210 342 132 9 chrX 41287662 41287776 -121312154 + L3 LINE CR1 1235 1362 -215 2354 221 125 84 chrX 41287821 41287931 -121311999 + L1MC4 LINE L1 6903 7007 -1035 1724 188 14 0 chrX 41287931 41288224 -121311706 + AluJo SINE Alu 1 297 -15 2354 221 125 84 chrX 41288224 41288460 -121311470 + L1MC4 LINE L1 7007 7232 -810 2192 98 11 0 chrX 41288460 41288746 -121311184 + AluSg SINE Alu 1 289 -21 2490 43 0 0 chrX 41288747 41289060 -121310870 + AluY SINE Alu 1 313 0 2354 221 125 84 chrX 41289060 41289804 -121310126 + L1MC4 LINE L1 7231 8042 0 1229 157 60 51 chrX 41289940 41290157 -121309773 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chrX 41290268 41290291 -121309639 + AT_rich Low_complexity Low_complexity 1 23 0 1941 116 36 4 chrX 41290398 41290674 -121309256 + AluJb SINE Alu 1 285 -27 788 183 0 0 chrX 41290712 41290843 -121309087 - AluJb SINE Alu -9 303 173 1426 169 0 0 chrX 41290860 41291079 -121308851 - AluJo SINE Alu -93 219 1 193 350 10 21 chrX 41291085 41291182 -121308748 + MER5A DNA MER1_type 68 163 -26 535 176 25 42 chrX 41291232 41291351 -121308579 - L2 LINE L2 -466 2848 2732 5844 189 148 75 chrX 41291351 41291885 -121308045 - L1MC3 LINE L1 0 7785 7292 414 264 0 0 chrX 41291885 41291976 -121307954 - MLT1F1 LTR MaLR -442 125 35 5844 189 148 75 chrX 41291976 41292016 -121307914 - L1MC3 LINE L1 -493 7292 7256 2369 75 7 3 chrX 41292016 41292308 -121307622 + AluSc SINE Alu 1 293 -16 5844 189 148 75 chrX 41292308 41293461 -121306469 - L1MC3 LINE L1 -529 7256 5810 2432 84 0 0 chrX 41293461 41293769 -121306161 - AluSx SINE Alu -4 308 1 5844 189 148 75 chrX 41293769 41293907 -121306023 - L1MC3 LINE L1 -1975 5810 5684 448 93 81 0 chrX 41293907 41293993 -121305937 - L1MB3 LINE L1 -1 6182 6090 2829 133 27 11 chrX 41294002 41294554 -121305376 - L1MA4 LINE L1 -272 6030 5428 326 150 0 0 chrX 41294551 41294611 -121305319 - L1MD3 LINE L1 0 7995 7936 * 1331 123 0 11 chrX 41294611 41294798 -121305132 + AluJo SINE Alu 1 185 -127 2310 89 3 7 chrX 41294871 41295175 -121304755 + AluSx SINE Alu 1 303 -9 1813 151 0 30 chrX 41295182 41295486 -121304444 + AluJb SINE Alu 1 295 -17 770 174 0 8 chrX 41295503 41295624 -121304306 + FLAM_C SINE Alu 6 125 -18 2190 66 63 3 chrX 41295663 41295950 -121303980 - AluSp SINE Alu -9 304 1 2539 60 3 0 chrX 41295975 41296275 -121303655 - AluSp SINE Alu -10 303 3 1148 160 55 5 chrX 41296277 41296477 -121303453 + MER82 DNA MER2_type 145 354 -299 1750 166 10 14 chrX 41296481 41296777 -121303153 - AluJo SINE Alu -17 295 1 874 132 0 0 chrX 41296800 41296921 -121303009 - FLAM_C SINE Alu -22 121 1 1590 195 24 10 chrX 41296923 41297221 -121302709 + MER82 DNA MER2_type 351 652 -1 460 176 11 0 chrX 41297230 41297321 -121302609 - L1M4 LINE L1 -3128 3018 2927 366 188 0 16 chrX 41297325 41297389 -121302541 + MER58A DNA MER1_type 30 92 -15 2397 73 37 0 chrX 41297390 41297690 -121302240 - AluSq SINE Alu -2 311 1 425 154 0 0 chrX 41297713 41297778 -121302152 + MER58A DNA MER1_type 160 224 0 2041 206 25 5 chrX 41297778 41298210 -121301720 - L1M4 LINE L1 -3206 2940 2500 1418 124 0 25 chrX 41348210 41348412 -121251518 - AluJb SINE Alu -115 197 1 1129 254 51 19 chrX 41348414 41348729 -121251201 - L1ME LINE L1 -402 5768 5444 1446 183 28 53 chrX 41348749 41349071 -121250859 - L1ME2 LINE L1 -9 6155 5842 1129 206 71 4 chrX 41349068 41349320 -121250610 + L1MD2 LINE L1 5686 5954 -405 * 2894 235 28 3 chrX 41349296 41349931 -121249999 - L1MB7 LINE L1 0 6578 5928 456 206 85 28 chrX 41349931 41350219 -121249711 - L1MB7 LINE L1 -3427 3113 1630 895 84 0 0 chrX 41350240 41350359 -121249571 - AluSx SINE Alu 0 310 192 328 114 0 0 chrX 41350360 41350404 -121249526 - AluSx SINE Alu -162 141 98 642 168 9 0 chrX 41350404 41350517 -121249413 + AluSc SINE Alu 132 245 -64 1719 86 5 0 chrX 41350519 41350739 -121249191 + AluSq SINE Alu 85 305 -8 451 263 0 0 chrX 41351668 41351767 -121248163 + MER5B DNA MER1_type 1 99 -79 3214 204 73 32 chrX 41351767 41352007 -121247923 - L1M4 LINE L1 -2929 3217 2988 2169 94 28 0 chrX 41352007 41352293 -121247637 - AluSq SINE Alu -19 294 1 3214 204 73 32 chrX 41352293 41352407 -121247523 - L1M4 LINE L1 -3158 2988 2880 2364 104 0 0 chrX 41352407 41352714 -121247216 - AluSx SINE Alu -5 307 1 3214 204 73 32 chrX 41352714 41353264 -121246666 - L1M4 LINE L1 -3266 2880 2275 1075 172 0 0 chrX 41353264 41353427 -121246503 - FRAM SINE Alu -20 156 1 226 188 62 0 chrX 41353517 41353565 -121246365 + L1MC4a LINE L1 7753 7803 -5 24 67 0 0 chrX 41353575 41353620 -121246310 + AT_rich Low_complexity Low_complexity 1 45 0 414 289 90 6 chrX 41354818 41354984 -121244946 - L3 LINE CR1 -63 1514 1335 307 228 251 39 chrX 41355053 41355312 -121244618 + L2 LINE L2 1713 2026 -1288 266 192 51 26 chrX 41355450 41355528 -121244402 + GA-rich Low_complexity Low_complexity 4 83 0 630 361 55 27 chrX 41355615 41356127 -121243803 + L2 LINE L2 2378 2903 -411 1150 168 59 5 chrX 41356928 41357131 -121242799 + MER58 DNA MER1_type 3 216 -125 2211 199 169 4 chrX 41357132 41357630 -121242300 - MLT1G LTR MaLR 0 590 11 1679 209 67 24 chrX 41357958 41358374 -121241556 + MLT1H LTR MaLR 114 547 -2 2049 111 0 0 chrX 41358728 41359008 -121240922 + AluSg SINE Alu 18 297 -13 522 127 13 0 chrX 41359018 41359097 -121240833 - MER116 DNA Mariner 0 80 1 3174 183 30 2 chrX 41361058 41361600 -121238330 - MER68 LTR ERV1 0 562 6 568 267 83 92 chrX 41362009 41362454 -121237476 + L2 LINE L2 2832 3272 0 410 289 132 26 chrX 41362585 41362775 -121237155 + MLT1K LTR MaLR 369 578 -10 314 326 52 15 chrX 41363117 41363252 -121236678 + L3 LINE CR1 253 392 -1185 445 290 351 15 chrX 41363355 41363813 -121236117 + L3 LINE CR1 583 1194 -383 469 323 101 4 chrX 41363822 41364070 -121235860 + L1ME3A LINE L1 5555 5826 -344 1244 265 86 8 chrX 41364081 41364432 -121235498 - MLT1I LTR MaLR -3 406 29 437 0 0 19 chrX 41364588 41364642 -121235288 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1724 157 27 10 chrX 41364733 41365026 -121234904 + AluJb SINE Alu 11 308 -4 291 230 26 18 chrX 41365033 41365146 -121234784 + GA-rich Low_complexity Low_complexity 1 114 0 1180 141 0 11 chrX 41365151 41365335 -121234595 + FRAM SINE Alu 1 176 0 2225 92 3 7 chrX 41365484 41365795 -121234135 + AluSx SINE Alu 1 312 0 371 321 9 19 chrX 41366048 41366154 -121233776 + L3 LINE CR1 1461 1565 -12 2372 116 0 0 chrX 41366993 41367304 -121232626 + AluSx SINE Alu 1 311 -1 239 277 62 54 chrX 41368293 41368423 -121231507 + L1ME LINE L1 328 458 -5938 2206 87 24 0 chrX 41368844 41369132 -121230798 - AluSx SINE Alu -17 295 1 1629 199 65 91 chrX 41369455 41369785 -121230145 + L1ME LINE L1 783 1089 -5320 717 236 0 0 chrX 41369785 41369908 -121230022 + FLAM_A SINE Alu 1 123 -10 1629 199 65 91 chrX 41369908 41370234 -121229696 + L1ME LINE L1 1089 1422 -4987 2179 98 7 3 chrX 41370247 41370543 -121229387 - AluSx SINE Alu -10 302 6 1673 175 0 3 chrX 41370643 41370940 -121228990 + AluY SINE Alu 1 296 -15 784 198 64 12 chrX 41371156 41371328 -121228602 + MER58B DNA MER1_type 1 181 -160 2180 121 3 0 chrX 41371328 41371625 -121228305 - AluSx SINE Alu -14 298 1 228 111 0 0 chrX 41371625 41371661 -121228269 - L1M4 LINE L1 -3175 2971 2936 2208 100 13 0 chrX 41371729 41372028 -121227902 - AluSx SINE Alu -9 303 1 1054 161 0 6 chrX 41372030 41372198 -121227732 + MER58B DNA MER1_type 175 341 0 2218 99 3 0 chrX 41372928 41373240 -121226690 + AluSp SINE Alu 1 313 0 2380 71 3 7 chrX 41373251 41373545 -121226385 + AluSx SINE Alu 1 293 -19 1132 164 36 36 chrX 41373997 41374216 -121225714 - MER20 DNA MER1_type 0 219 1 400 246 103 112 chrX 41374683 41374837 -121225093 - L1ME LINE L1 -303 5818 5665 2361 94 0 25 chrX 41374837 41375157 -121224773 - AluSx SINE Alu 0 312 1 400 246 103 112 chrX 41375157 41375226 -121224704 - L1ME LINE L1 -456 5665 5597 973 163 18 98 chrX 41376157 41376207 -121223723 - L1MA10 LINE L1 -29 6305 6253 2122 122 3 0 chrX 41376207 41376493 -121223437 + AluSx SINE Alu 1 287 -25 973 163 18 98 chrX 41376493 41376719 -121223211 - L1MA10 LINE L1 -81 6253 6051 508 211 77 0 chrX 41376771 41376927 -121223003 - LTR16A1 LTR ERVL -4 453 286 257 239 33 54 chrX 41377010 41377102 -121222828 - LTR16A1 LTR ERVL -347 110 21 239 321 52 76 chrX 41377129 41377242 -121222688 - L2 LINE L2 -30 3242 3128 1199 110 110 10 chrX 41377242 41377451 -121222479 + MER30 DNA MER1_type 1 230 0 239 321 52 76 chrX 41377451 41377823 -121222107 - L2 LINE L2 -144 3128 2773 271 295 0 13 chrX 41377910 41377988 -121221942 + MIR SINE MIR 67 143 -119 1861 189 32 12 chrX 41378665 41379003 -121220927 - L1MC/D LINE L1 -564 6489 6140 2502 82 7 0 chrX 41379003 41379309 -121220621 - AluSx SINE Alu -4 308 1 1861 189 32 12 chrX 41379309 41379414 -121220516 - L1MC/D LINE L1 -913 6140 6039 598 179 16 8 chrX 41379419 41379542 -121220388 - L1ME LINE L1 -748 5611 5488 255 208 78 0 chrX 41379555 41379632 -121220298 - L1MC/D LINE L1 -906 6051 5969 528 127 0 0 chrX 41379637 41379716 -121220214 - LTR23 LTR ERV1 -34 403 325 716 188 64 15 chrX 41379721 41379923 -121220007 - L1MC/D LINE L1 -974 5983 5772 1880 207 63 22 chrX 41379923 41380382 -121219548 + MLT1D LTR MaLR 26 503 -2 501 162 36 9 chrX 41380808 41380919 -121219011 - L1MB7 LINE L1 0 6184 6071 4011 188 149 103 chrX 41380927 41381957 -121217973 - L1MC/D LINE L1 -4803 2156 1175 1291 90 0 0 chrX 41381957 41382123 -121217807 - AluSq SINE Alu -12 301 136 4011 188 149 103 chrX 41382123 41383014 -121216916 - L1MC/D LINE L1 -5784 1175 4 2339 148 48 17 chrX 41384963 41385381 -121214549 + MSTB1 LTR MaLR 2 432 0 1518 251 42 40 chrX 41386044 41386518 -121213412 - MLT1E LTR MaLR 0 593 119 546 100 0 0 chrX 41386516 41386596 -121213334 - MLT1E LTR MaLR -427 166 87 * 298 333 6 57 chrX 41387231 41387390 -121212540 + MER5A DNA MER1_type 14 164 -25 321 275 132 54 chrX 41387424 41387591 -121212339 - MIR SINE MIR -74 188 9 2251 109 0 0 chrX 41387975 41388277 -121211653 - AluSg SINE Alu -8 302 1 4311 192 73 21 chrX 41388439 41389626 -121210304 - L1MDa LINE L1 -4477 2063 815 384 319 59 0 chrX 41389659 41389794 -121210136 - L1MDa LINE L1 -5819 721 579 1905 130 34 8 chrX 41389822 41390175 -121209755 - L1MB7 LINE L1 -9 6569 6208 330 115 0 0 chrX 41390175 41390227 -121209703 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 2299 98 10 0 chrX 41390229 41390525 -121209405 - AluSp SINE Alu -14 299 1 1630 158 3 19 chrX 41390525 41390835 -121209095 - L1MB7 LINE L1 -356 6222 5918 367 267 52 64 chrX 41390843 41391094 -121208836 - L1MCb LINE L1 -5205 840 593 624 258 93 29 chrX 41391455 41391734 -121208196 - L1MCb LINE L1 -5683 362 66 320 170 0 10 chrX 41392170 41392243 -121207687 + Alu SINE Alu 1 47 -255 696 293 98 5 chrX 41393949 41394164 -121205766 - MIR SINE MIR -8 254 20 2498 70 0 0 chrX 41394170 41394469 -121205461 - AluY SINE Alu -12 299 1 2367 81 0 3 chrX 41395179 41395475 -121204455 - AluSc SINE Alu -14 295 1 1058 223 86 66 chrX 41395583 41396041 -121203889 - MLT1D LTR MaLR 0 467 1 1844 149 0 48 chrX 41396361 41396670 -121203260 + AluJb SINE Alu 1 294 -18 813 220 35 9 chrX 41396670 41396891 -121203039 + L1MD3 LINE L1 7751 7980 -15 1190 217 30 110 chrX 41397767 41397811 -121202119 - MSTD LTR MaLR 0 396 350 2026 115 0 21 chrX 41397811 41398137 -121201793 - AluSg SINE Alu 0 320 1 1190 217 30 110 chrX 41398137 41398519 -121201411 - MSTD LTR MaLR -46 350 3 506 68 45 0 chrX 41398538 41398626 -121201304 + (TA)n Simple_repeat Simple_repeat 1 92 0 215 311 0 27 chrX 41398941 41399015 -121200915 + L2 LINE L2 3201 3272 0 1923 157 7 7 chrX 41399686 41399991 -121199939 - AluSx SINE Alu -7 305 1 1050 194 21 11 chrX 41400348 41400534 -121199396 - MER5A DNA MER1_type 0 189 2 1230 264 26 14 chrX 41401023 41401447 -121198483 - L1MB7 LINE L1 -769 5771 5343 * 2109 218 21 37 chrX 41401443 41402295 -121197635 - L1MB7 LINE L1 -1409 5131 4197 920 131 124 9 chrX 41402298 41402584 -121197346 - MLT1A2 LTR MaLR -1 373 1 288 164 45 0 chrX 41402717 41402851 -121197079 + (TA)n Simple_repeat Simple_repeat 1 140 0 200 136 68 0 chrX 41402879 41402938 -121196992 + (TA)n Simple_repeat Simple_repeat 1 63 0 337 164 17 0 chrX 41402961 41403077 -121196853 + (TA)n Simple_repeat Simple_repeat 1 118 0 1842 156 0 3 chrX 41403083 41403366 -121196564 - AluJb SINE Alu -30 282 1 807 242 37 54 chrX 41403366 41403571 -121196359 - L1MB7 LINE L1 -2459 4081 3883 1741 173 20 10 chrX 41403571 41403872 -121196058 - AluJb SINE Alu -7 305 2 807 242 37 54 chrX 41403872 41404017 -121195913 - L1MB7 LINE L1 -2657 3883 3737 1955 211 86 26 chrX 41404050 41404376 -121195554 + L1MDa LINE L1 17 322 -6218 2102 138 13 0 chrX 41404376 41404681 -121195249 - AluSx SINE Alu -3 309 1 1955 211 86 26 chrX 41404681 41405325 -121194605 + L1MDa LINE L1 322 1246 -5294 3506 215 60 24 chrX 41405330 41405420 -121194510 - L1MB7 LINE L1 -2845 3695 3610 2038 122 0 50 chrX 41405420 41405740 -121194190 - AluJb SINE Alu -8 304 1 3506 215 60 24 chrX 41405740 41406111 -121193819 - L1MB7 LINE L1 -2930 3610 3254 928 143 0 0 chrX 41406111 41406244 -121193686 - FLAM_C SINE Alu 0 133 1 3506 215 60 24 chrX 41406244 41406948 -121192982 - L1MB7 LINE L1 -3286 3254 2480 441 0 0 0 chrX 41406948 41406997 -121192933 + (TG)n Simple_repeat Simple_repeat 2 50 0 3506 215 60 24 chrX 41406997 41407056 -121192874 - L1MB7 LINE L1 -4060 2480 2425 477 246 21 0 chrX 41407053 41407195 -121192735 + L1M4 LINE L1 3416 3560 -2586 * 3360 181 28 5 chrX 41407196 41407866 -121192064 + Tigger6a DNA MER2_type 398 1083 0 416 236 104 60 chrX 41407866 41408048 -121191882 + L1ME2 LINE L1 5949 6138 -26 1887 146 3 36 chrX 41408181 41408482 -121191448 + AluJb SINE Alu 1 291 -21 2068 170 0 0 chrX 41408753 41409065 -121190865 - AluJo SINE Alu 0 312 1 2225 78 44 0 chrX 41409362 41409656 -121190274 - AluSp SINE Alu -6 307 1 1070 174 26 0 chrX 41409670 41409860 -121190070 - L1MB7 LINE L1 -19 6165 5971 522 92 1 28 chrX 41409860 41409946 -121189984 - MLT1B LTR MaLR -1 389 315 207 100 0 0 chrX 41409946 41409976 -121189954 + (TC)n Simple_repeat Simple_repeat 2 31 0 1143 217 42 45 chrX 41409976 41410312 -121189618 - MLT1B LTR MaLR -55 335 1 3150 131 13 75 chrX 41410312 41410982 -121188948 - L1MB7 LINE L1 -208 5976 5348 1792 163 29 78 chrX 41411172 41411440 -121188490 - L1M LINE L1 -782 5364 5197 1909 168 3 0 chrX 41411440 41411731 -121188199 + AluJo SINE Alu 1 292 -20 1792 163 29 78 chrX 41411731 41412011 -121187919 - L1M LINE L1 -949 5197 4905 1842 166 3 14 chrX 41412158 41412454 -121187476 - AluJo SINE Alu -19 293 1 8211 104 38 21 chrX 41412567 41413843 -121186087 - HSMAR2 DNA Mariner -2 1300 3 2270 101 7 7 chrX 41414440 41414736 -121185194 + AluSx SINE Alu 1 296 -16 1146 131 25 0 chrX 41414861 41415021 -121184909 - AluJb SINE Alu -9 303 140 858 261 77 56 chrX 41415027 41415418 -121184512 - MLT1J2 LTR MaLR -47 403 5 195 306 0 0 chrX 41415448 41415497 -121184433 + L2 LINE L2 3160 3208 -64 771 289 43 8 chrX 41415569 41415804 -121184126 - MLT1H1 LTR MaLR -311 244 2 788 171 8 0 chrX 41415828 41415957 -121183973 - FLAM_A SINE Alu -1 132 3 994 227 34 65 chrX 41416942 41417233 -121182697 + L2 LINE L2 2260 2541 -773 2558 40 0 3 chrX 41417476 41417774 -121182156 - AluY SINE Alu -14 297 1 1643 232 86 12 chrX 41417832 41418359 -121181571 - MLT1G LTR MaLR -2 588 46 1071 171 0 0 chrX 41418526 41418690 -121181240 - FRAM SINE Alu -13 163 1 2346 101 0 0 chrX 41419189 41419486 -121180444 + AluSx SINE Alu 1 297 -15 2084 253 69 31 chrX 41419855 41419973 -121179957 - L1ME3A LINE L1 -5 6165 6053 1534 168 8 0 chrX 41419973 41420217 -121179713 + AluJo SINE Alu 1 246 -66 2084 253 69 31 chrX 41420217 41421189 -121178741 - L1ME3A LINE L1 -117 6053 5032 3411 71 41 5 chrX 41422251 41422689 -121177241 - L1PA11 LINE L1 -1 6173 5720 208 278 80 66 chrX 41422714 41422766 -121177164 - MIR SINE MIR -109 153 103 2324 91 3 3 chrX 41422766 41423074 -121176856 + AluSg SINE Alu 1 308 -2 208 278 80 66 chrX 41423074 41423172 -121176758 - MIR SINE MIR -159 103 1 1721 172 0 30 chrX 41423342 41423639 -121176291 + AluJo SINE Alu 1 288 -24 1402 112 45 41 chrX 41425437 41425706 -121174224 - L1MD3 LINE L1 0 7995 7726 618 333 15 0 chrX 41425841 41426036 -121173894 - MIR SINE MIR -18 244 47 235 247 282 12 chrX 41427732 41427817 -121172113 - MIR3 SINE MIR -10 198 91 362 321 87 69 chrX 41428148 41428596 -121171334 - L2 LINE L2 -1 3271 2816 181 171 146 0 chrX 41428652 41428693 -121171237 - L2 LINE L2 -586 2728 2682 1222 263 27 6 chrX 41428973 41429304 -121170626 + MER46C DNA MER2_type 1 338 0 2397 85 0 0 chrX 41429910 41430203 -121169727 + AluSg SINE Alu 1 293 -17 1753 169 38 0 chrX 41430734 41431024 -121168906 + AluJb SINE Alu 1 301 -11 704 198 115 0 chrX 41431373 41431530 -121168400 - MER58C DNA MER1_type -1 214 40 1192 206 135 32 chrX 41433287 41433704 -121166226 - L1ME2 LINE L1 -10 6154 5689 2248 61 0 50 chrX 41433728 41434054 -121165876 - AluY SINE Alu 0 311 1 1062 51 14 8 chrX 41434981 41435002 -121164928 - L1P LINE L1 -801 5355 5336 2084 136 0 3 chrX 41435002 41435303 -121164627 + AluJb SINE Alu 2 301 -11 1062 51 14 8 chrX 41435303 41435441 -121164489 - L1P LINE L1 -820 5336 5192 7730 8 0 1 chrX 41435441 41436261 -121163669 + L1PA2 LINE L1 5334 6153 -2 1575 130 91 75 chrX 41436643 41436781 -121163149 + AluJo SINE Alu 1 135 -177 5884 88 6 46 chrX 41436781 41437656 -121162274 - L1MA2 LINE L1 0 6304 5465 1575 130 91 75 chrX 41437656 41437824 -121162106 + AluJo SINE Alu 135 312 0 236 250 30 83 chrX 41438263 41438395 -121161535 + MARNA DNA Mariner 73 197 -389 * 358 252 0 28 chrX 41438329 41438436 -121161494 - MARNA DNA Mariner -138 448 345 2253 133 14 17 chrX 41438536 41438890 -121161040 - L1PA16 LINE L1 0 6166 5814 1691 113 74 12 chrX 41438890 41439145 -121160785 - L1PA15 LINE L1 0 6165 5893 3720 90 98 0 chrX 41439388 41439868 -121160062 + MER1A DNA MER1_type 1 527 0 755 221 6 6 chrX 41439883 41440041 -121159889 - L1MC5 LINE L1 -1114 6847 6690 214 333 58 81 chrX 41440201 41440375 -121159555 + L2 LINE L2 3103 3272 0 1648 141 52 38 chrX 41440533 41440823 -121159107 - AluJo SINE Alu -14 298 5 2083 108 28 3 chrX 41440823 41441110 -121158820 - AluSx SINE Alu -18 294 1 1290 179 9 22 chrX 41441117 41441346 -121158584 - AluJo SINE Alu 0 312 87 15678 135 31 10 chrX 41441742 41442678 -121157252 + L1MB7 LINE L1 1355 2269 -5296 2538 79 0 0 chrX 41442678 41442983 -121156947 + AluY SINE Alu 1 305 -6 15678 135 31 10 chrX 41442983 41445829 -121154101 + L1MB7 LINE L1 2269 5216 -2349 1166 168 5 0 chrX 41445826 41446023 -121153907 - L1 LINE L1 -2176 3970 3773 * 475 84 0 0 chrX 41446017 41446088 -121153842 + L1MA2 LINE L1 6130 6200 -104 * 552 242 0 0 chrX 41446191 41446286 -121153644 + AluJ/FLAM SINE Alu 2 96 -216 2276 110 0 7 chrX 41446405 41446714 -121153216 + AluSp SINE Alu 1 307 -6 1205 162 69 0 chrX 41446714 41446918 -121153012 + L1MB7 LINE L1 6851 7068 -535 2944 179 40 18 chrX 41446928 41447474 -121152456 - MER77 LTR ERV1 -7 598 41 2822 156 49 8 chrX 41447489 41447997 -121151933 + L1MB7 LINE L1 7065 7593 -10 30 45 0 0 chrX 41448126 41448170 -121151760 + AT_rich Low_complexity Low_complexity 1 44 0 2090 90 69 3 chrX 41448316 41448606 -121151324 - AluSg1 SINE Alu 0 309 1 1833 133 54 4 chrX 41448607 41448886 -121151044 - AluJb SINE Alu -19 293 1 1357 97 0 0 chrX 41448890 41449066 -121150864 - AluSg/x SINE Alu 0 312 137 1533 173 28 0 chrX 41449126 41449374 -121150556 - AluJo SINE Alu -57 255 1 1438 162 62 7 chrX 41449397 41449669 -121150261 - L1MA6 LINE L1 -4 6296 6010 210 344 159 0 chrX 41450128 41450285 -121149645 + L3 LINE CR1 1346 1527 -50 2270 93 0 17 chrX 41450650 41450951 -121148979 + AluSx SINE Alu 1 296 -16 2033 124 7 0 chrX 41450954 41451236 -121148694 + AluSx SINE Alu 1 284 -28 567 135 155 140 chrX 41451466 41451490 -121148440 + MER3 DNA MER1_type 7 29 -180 2255 113 0 7 chrX 41451490 41451800 -121148130 + AluSx SINE Alu 1 308 -4 567 135 155 140 chrX 41451800 41451914 -121148016 + MER3 DNA MER1_type 29 151 -58 2292 104 0 0 chrX 41451914 41452202 -121147728 + AluSx SINE Alu 1 288 -24 567 135 155 140 chrX 41452202 41452262 -121147668 + MER3 DNA MER1_type 151 209 0 753 122 0 0 chrX 41452283 41452381 -121147549 + AluJ/FLAM SINE Alu 5 102 -210 33 20 0 20 chrX 41452387 41452409 -121147521 + AT_rich Low_complexity Low_complexity 1 22 -28 1975 141 0 3 chrX 41452409 41452700 -121147230 - AluJb SINE Alu -22 290 1 33 20 0 20 chrX 41452700 41452728 -121147202 + AT_rich Low_complexity Low_complexity 22 50 0 1061 123 94 71 chrX 41454128 41454340 -121145590 - MER20 DNA MER1_type -1 218 2 553 219 34 27 chrX 41454573 41454719 -121145211 - MIR SINE MIR -26 236 90 356 321 107 0 chrX 41455773 41455913 -121144017 - L2 LINE L2 -1 3271 3117 264 137 0 0 chrX 41459105 41459156 -121140774 - L1ME3 LINE L1 -2 6160 6110 23 0 0 0 chrX 41460429 41460452 -121139478 + AT_rich Low_complexity Low_complexity 1 23 0 294 29 0 0 chrX 41460853 41460888 -121139042 + (TC)n Simple_repeat Simple_repeat 2 36 0 1761 138 14 14 chrX 41461544 41461826 -121138104 - AluJo SINE Alu -18 294 13 938 118 0 22 chrX 41462735 41462870 -121137060 + FLAM_C SINE Alu 1 132 -1 440 273 43 19 chrX 41462947 41463108 -121136822 - MIR SINE MIR -9 253 89 704 144 0 0 chrX 41463455 41463559 -121136371 + MLT1D LTR MaLR 13 116 -510 1712 172 117 25 chrX 41463618 41463985 -121135945 + MLT1D LTR MaLR 105 505 0 223 287 213 0 chrX 41464317 41464467 -121135463 + L3 LINE CR1 1257 1438 -139 274 88 27 11 chrX 41464497 41464551 -121135379 + L1ME1 LINE L1 2593 2687 -3891 624 105 0 0 chrX 41464553 41464639 -121135291 + AluSq SINE Alu 2 87 -226 1063 78 0 0 chrX 41464639 41464787 -121135143 + AluSp/q SINE Alu 156 303 0 2158 90 10 33 chrX 41464801 41465100 -121134830 + AluSx SINE Alu 1 292 -20 1563 217 132 57 chrX 41465102 41465377 -121134553 + L1ME1 LINE L1 3841 4094 -2446 2044 133 0 7 chrX 41465377 41465678 -121134252 + AluSx SINE Alu 1 299 -13 1563 217 132 57 chrX 41465678 41465828 -121134102 + L1ME1 LINE L1 4094 4231 -2309 2238 116 0 7 chrX 41465828 41466138 -121133792 + AluSx SINE Alu 1 308 -4 1563 217 132 57 chrX 41466138 41466251 -121133679 + L1ME1 LINE L1 4231 4420 -2120 966 132 0 0 chrX 41466251 41466387 -121133543 + AluJo SINE Alu 1 136 -176 1631 160 76 6 chrX 41466407 41466751 -121133179 - L1 LINE L1 -818 5328 4961 974 134 0 15 chrX 41466751 41466885 -121133045 - FLAM_C SINE Alu -1 132 1 283 267 0 0 chrX 41466886 41466961 -121132969 + L1ME1 LINE L1 5554 5628 -912 * 776 222 47 75 chrX 41466948 41467227 -121132703 + L1ME1 LINE L1 6241 6511 -49 1856 164 0 13 chrX 41467227 41467525 -121132405 + AluJo SINE Alu 1 294 -18 454 113 127 0 chrX 41468137 41468208 -121131722 - MADE1 DNA Mariner 0 80 1 2140 112 28 0 chrX 41468328 41468613 -121131317 + AluSx SINE Alu 1 293 -19 1277 93 0 0 chrX 41469041 41469202 -121130728 - AluJo SINE Alu -23 289 129 978 104 0 8 chrX 41469259 41469393 -121130537 - AluJo SINE Alu -179 133 1 2217 88 0 37 chrX 41469649 41469975 -121129955 + AluSx SINE Alu 1 315 0 897 303 7 22 chrX 41469984 41470255 -121129675 + MER89-int LTR ERV1 2401 2667 -1980 1175 111 0 17 chrX 41470256 41470428 -121129502 - AluSq SINE Alu -10 303 135 375 200 70 24 chrX 41470459 41470559 -121129371 + MER89-int LTR ERV1 4990 5951 -1586 1485 128 0 18 chrX 41470917 41471144 -121128786 + AluJb SINE Alu 86 308 -4 1839 157 0 17 chrX 41471323 41471616 -121128314 + AluJo SINE Alu 1 288 -24 7094 19 0 0 chrX 41471778 41472547 -121127383 + L1PA2 LINE L1 5387 6155 0 1706 158 113 97 chrX 41472566 41472749 -121127181 + MER90 LTR ERV1 3 182 -432 1392 159 120 22 chrX 41472749 41473025 -121126905 + AluJo SINE Alu 1 303 -9 2114 95 3 0 chrX 41473030 41473315 -121126615 + AluY SINE Alu 1 286 -25 956 130 6 0 chrX 41473315 41473476 -121126454 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 1706 158 113 97 chrX 41473476 41473697 -121126233 + MER90 LTR ERV1 185 466 -148 1537 159 46 14 chrX 41473697 41473980 -121125950 - AluSx SINE Alu -20 292 1 1706 158 113 97 chrX 41473980 41474096 -121125834 + MER90 LTR ERV1 466 579 -35 372 267 21 73 chrX 41525218 41525409 -121074521 + MER46C DNA MER2_type 156 336 -2 1058 289 55 45 chrX 41526092 41526688 -121073242 - L2 LINE L2 0 3313 2707 910 236 14 47 chrX 41531579 41531876 -121068054 - L1ME3A LINE L1 -3 6167 5881 466 198 169 53 chrX 41531882 41532125 -121067805 - L1MC5 LINE L1 -36 7925 7655 269 307 11 11 chrX 41532302 41532390 -121067540 + MER91B DNA MER1_type 88 175 -15 27 62 0 0 chrX 41533145 41533193 -121066737 + AT_rich Low_complexity Low_complexity 1 48 0 2153 118 17 0 chrX 41534696 41534983 -121064947 - AluSx SINE Alu -20 292 1 273 136 34 17 chrX 41535162 41535221 -121064709 - MLT1J1 LTR MaLR -316 130 71 239 235 132 0 chrX 41535608 41535676 -121064254 - L2 LINE L2 -38 3234 3158 847 114 250 6 chrX 41535787 41535963 -121063967 + MER20 DNA MER1_type 1 219 0 323 195 39 13 chrX 41535975 41536052 -121063878 - Charlie1 DNA MER1_type -4 2757 2679 412 182 147 77 chrX 41536073 41536216 -121063714 - Charlie1 DNA MER1_type -2602 159 7 296 311 194 17 chrX 41536217 41536397 -121063533 + MIR SINE MIR 4 215 -47 266 292 0 0 chrX 41536918 41536990 -121062940 + (CGG)n Simple_repeat Simple_repeat 2 73 0 1101 178 73 170 chrX 41538049 41538491 -121061439 + L1MC4 LINE L1 7513 7632 -176 1374 120 76 7 chrX 41538491 41538766 -121061164 + L1MA8 LINE L1 5998 6291 0 1101 178 73 170 chrX 41538766 41538928 -121061002 + L1MC4 LINE L1 7632 7808 0 674 183 59 35 chrX 41539182 41539351 -121060579 - L1MD3 LINE L1 -459 7536 7364 462 241 61 85 chrX 41539355 41539567 -121060363 + L2 LINE L2 2733 2939 -375 598 290 34 17 chrX 41539586 41539762 -121060168 - MER110-int LTR ERV1 -2318 2329 2151 914 101 20 0 chrX 41539908 41540056 -121059874 + L1MB5 LINE L1 6024 6174 0 265 270 54 9 chrX 41540622 41540733 -121059197 + L1M4 LINE L1 4317 4432 -1714 348 163 216 32 chrX 41540748 41540868 -121059062 - HsTC2 DNA Tc2 -1761 137 1 820 135 0 0 chrX 41541389 41541500 -121058430 + AluSg/x SINE Alu 176 286 -24 447 19 0 0 chrX 41541657 41541709 -121058221 + (TG)n Simple_repeat Simple_repeat 2 53 0 181 302 19 0 chrX 41541776 41541829 -121058101 - MIR SINE MIR 0 262 209 298 131 49 0 chrX 41541920 41541981 -121057949 + L1MB2 LINE L1 6101 6164 -7 2243 99 13 7 chrX 41542066 41542369 -121057561 - AluSx SINE Alu -7 305 1 216 0 0 0 chrX 41542369 41542393 -121057537 + (T)n Simple_repeat Simple_repeat 1 24 0 185 178 14 41 chrX 41545006 41545079 -121054851 + CT-rich Low_complexity Low_complexity 4 74 0 731 121 52 0 chrX 41546747 41546863 -121053067 + AluSg/x SINE Alu 173 294 -18 2569 45 0 0 chrX 41546863 41547177 -121052753 + AluY SINE Alu 1 311 0 296 342 9 18 chrX 41547523 41547634 -121052296 + L2 LINE L2 2266 2375 -939 212 214 0 0 chrX 41547659 41547701 -121052229 - L2 LINE L2 -49 3223 3182 1356 101 0 0 chrX 41547979 41548148 -121051782 - AluSg/x SINE Alu -11 301 133 2151 130 3 3 chrX 41549426 41549725 -121050205 - AluSx SINE Alu -13 299 1 743 322 74 44 chrX 41549730 41550205 -121049725 + L2 LINE L2 2824 3312 -1 2325 113 0 0 chrX 41550620 41550922 -121049008 + AluSx SINE Alu 1 302 -10 332 313 94 0 chrX 41552412 41552540 -121047390 - MIR SINE MIR -34 228 89 842 185 0 0 chrX 41552747 41552882 -121047048 + FRAM SINE Alu 19 153 -23 277 178 322 0 chrX 41553358 41553448 -121046482 - MLT1K LTR MaLR -34 554 436 235 271 43 0 chrX 41553453 41553523 -121046407 - MIR SINE MIR -81 181 109 2438 85 0 0 chrX 41553545 41553838 -121046092 + AluSx SINE Alu 1 293 -19 418 258 90 70 chrX 41554044 41554152 -121045778 - L1M4 LINE L1 -6292 250 146 2489 63 3 0 chrX 41554152 41554455 -121045475 - AluY SINE Alu -7 304 1 418 258 90 70 chrX 41554455 41554475 -121045455 - L1M4 LINE L1 -6396 146 128 1814 117 137 48 chrX 41554475 41554868 -121045062 - MSTA LTR MaLR 0 428 1 418 258 90 70 chrX 41554868 41554982 -121044948 - L1M4 LINE L1 -6414 128 2 2177 106 0 46 chrX 41554984 41555150 -121044780 - AluY SINE Alu -22 289 142 2632 71 0 0 chrX 41555150 41555458 -121044472 - AluSg SINE Alu -2 308 1 2177 106 0 46 chrX 41555458 41555594 -121044336 - AluY SINE Alu -169 142 1 664 164 0 57 chrX 41555661 41555801 -121044129 - FLAM_C SINE Alu 0 143 12 5215 29 0 0 chrX 41555890 41556515 -121043415 - L1PA3 LINE L1 -5 6150 5526 1900 168 0 10 chrX 41556519 41556822 -121043108 - AluJo SINE Alu -12 300 1 926 189 61 9 chrX 41556822 41557050 -121042880 - L1MEc LINE L1 -4303 2093 1854 974 168 0 0 chrX 41557050 41557199 -121042731 - FRAM SINE Alu -2 174 26 2460 93 7 0 chrX 41557224 41557534 -121042396 + AluSx SINE Alu 1 312 0 1003 285 45 33 chrX 41557595 41557675 -121042255 - L1MEc LINE L1 -4759 1637 1559 2289 113 0 7 chrX 41557675 41557977 -121041953 - AluSx SINE Alu -12 300 1 1003 285 45 33 chrX 41557977 41558471 -121041459 - L1MEc LINE L1 -4837 1559 1056 2415 236 81 60 chrX 41558527 41559320 -121040610 - MER21B LTR ERV1 -54 809 1 928 159 41 9 chrX 41559332 41559552 -121040378 - L1MEc LINE L1 -5455 941 715 2738 94 7 2 chrX 41559575 41559978 -121039952 - L1M2 LINE L1 -572 5728 5324 2282 109 13 0 chrX 41559978 41560281 -121039649 - AluSx SINE Alu -5 307 1 460 93 0 0 chrX 41560378 41560453 -121039477 - L1M2 LINE L1 -1465 4681 4607 2413 101 0 0 chrX 41560462 41560769 -121039161 - AluSx SINE Alu -5 307 1 1908 167 0 13 chrX 41560773 41561072 -121038858 - AluJo SINE Alu -17 295 1 505 90 0 0 chrX 41561073 41561140 -121038790 + MER50 LTR ERV1 645 711 -23 527 219 130 0 chrX 41561141 41561287 -121038643 - L1MEc LINE L1 -6195 201 37 2306 105 0 13 chrX 41561656 41561962 -121037968 + AluSx SINE Alu 1 302 -10 2290 100 7 0 chrX 41561962 41562253 -121037677 + AluSg SINE Alu 1 293 -17 1996 162 0 0 chrX 41562960 41563349 -121036581 - AluJb SINE Alu 0 400 12 2358 103 0 0 chrX 41563387 41563689 -121036241 + AluSg SINE Alu 1 302 -8 1931 114 139 0 chrX 41563753 41564026 -121035904 + AluSq SINE Alu 1 311 -2 1764 155 24 7 chrX 41564317 41564613 -121035317 + AluJb SINE Alu 1 301 -11 2423 75 3 0 chrX 41564613 41564906 -121035024 - AluY SINE Alu -17 294 1 2412 79 7 10 chrX 41564924 41565229 -121034701 + AluSg SINE Alu 1 304 -6 2638 116 131 17 chrX 41565304 41565777 -121034153 - MER1A DNA MER1_type 0 527 1 2238 98 3 7 chrX 41566357 41566654 -121033276 + AluY SINE Alu 1 296 -15 1398 174 77 12 chrX 41566889 41567187 -121032743 - AluJb SINE Alu 0 320 6 2077 108 10 34 chrX 41567200 41567497 -121032433 - AluSq SINE Alu -18 295 6 2319 110 0 0 chrX 41567539 41567840 -121032090 - AluSq SINE Alu -9 304 4 1773 191 3 0 chrX 41568970 41569269 -121030661 - AluJo SINE Alu -12 300 1 2113 125 0 49 chrX 41569294 41569485 -121030445 - AluSx SINE Alu -1 311 141 2393 102 3 10 chrX 41569485 41569798 -121030132 - AluSx SINE Alu -1 311 1 2113 125 0 49 chrX 41569798 41569933 -121029997 - AluSx SINE Alu -171 141 1 1559 199 0 11 chrX 41570175 41570447 -121029483 + AluJo SINE Alu 1 269 -43 1379 92 31 0 chrX 41570894 41571090 -121028840 - MER30 DNA MER1_type -25 205 4 352 159 0 0 chrX 41572221 41572290 -121027640 - FLAM_A SINE Alu -19 114 58 585 229 0 0 chrX 41572290 41572399 -121027531 + AluJb SINE Alu 175 314 0 280 0 0 0 chrX 41572399 41572430 -121027500 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 837 140 0 70 chrX 41572432 41572575 -121027355 - AluJo SINE Alu -161 151 19 2009 133 3 7 chrX 41572616 41572910 -121027020 + AluSq SINE Alu 21 313 0 309 251 95 75 chrX 41572917 41573015 -121026915 + L1MC4 LINE L1 7501 7595 -428 2465 95 0 0 chrX 41573015 41573321 -121026609 + AluSg SINE Alu 1 306 -4 309 251 95 75 chrX 41573321 41573417 -121026513 + L1MC4 LINE L1 7595 7754 -269 2199 141 0 3 chrX 41573464 41573777 -121026153 + AluSx SINE Alu 1 312 0 2232 131 3 13 chrX 41573791 41574105 -121025825 + AluSx SINE Alu 1 311 -1 1572 126 18 35 chrX 41574379 41574712 -121025218 + MER4A LTR ERV1 262 647 -17 295 281 240 7 chrX 41574762 41574908 -121025022 - MIR SINE MIR -8 254 75 279 0 0 0 chrX 41574941 41574972 -121024958 + (TA)n Simple_repeat Simple_repeat 2 32 0 1153 68 0 0 chrX 41574972 41575119 -121024811 - L1PA5 LINE L1 -9 6145 5999 2371 70 3 3 chrX 41575129 41575434 -121024496 - AluSp SINE Alu 0 305 1 297 0 0 0 chrX 41575434 41575467 -121024463 + (T)n Simple_repeat Simple_repeat 1 33 0 1203 127 5 14 chrX 41575553 41575765 -121024165 - MER6 DNA MER2_type 0 865 656 546 88 0 0 chrX 41575766 41575834 -121024096 + AluS SINE Alu 2 69 -244 1910 109 0 33 chrX 41575834 41576110 -121023820 - AluSx SINE Alu -38 274 8 2458 84 3 0 chrX 41577711 41578022 -121021908 + AluSp SINE Alu 1 312 -1 24 67 0 0 chrX 41578073 41578118 -121021812 + AT_rich Low_complexity Low_complexity 1 45 0 1892 126 0 0 chrX 41578152 41578406 -121021524 + AluSx SINE Alu 1 254 -58 259 299 180 9 chrX 41578545 41578756 -121021174 - L2 LINE L2 -257 3056 2810 2086 151 3 3 chrX 41578986 41579290 -121020640 - AluJo SINE Alu -8 304 1 257 0 0 29 chrX 41579313 41579347 -121020583 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2360 69 0 0 chrX 41579349 41579624 -121020306 - AluY SINE Alu -36 275 1 2411 87 0 3 chrX 41579626 41579924 -121020006 - AluSx SINE Alu -15 297 1 482 266 32 0 chrX 41579948 41580072 -121019858 - MIR SINE MIR -101 161 34 2324 100 0 16 chrX 41580235 41580567 -121019363 - AluSg SINE Alu 0 310 2 2053 141 6 10 chrX 41580597 41580910 -121019020 - AluSx SINE Alu 0 312 1 258 325 48 48 chrX 41580910 41581076 -121018854 - L2 LINE L2 -565 2749 2584 1430 168 116 11 chrX 41581241 41581509 -121018421 + AluJb SINE Alu 1 296 -16 22 0 0 0 chrX 41581511 41581533 -121018397 + AT_rich Low_complexity Low_complexity 1 22 0 2154 122 7 0 chrX 41581542 41581836 -121018094 + AluSx SINE Alu 1 296 -16 248 330 52 0 chrX 41581909 41582024 -121017906 - L2 LINE L2 -916 2398 2278 229 163 349 12 chrX 41582115 41582201 -121017729 + MER103 DNA DNA 4 118 -48 714 175 0 17 chrX 41582242 41582362 -121017568 - FLAM_C SINE Alu -15 118 1 276 269 17 59 chrX 41582893 41583012 -121016918 - L1ME3A LINE L1 -69 6101 5988 2023 120 32 26 chrX 41583036 41583345 -121016585 - AluSx SINE Alu 0 312 2 2295 95 0 0 chrX 41583611 41583931 -121015999 + AluSx SINE Alu 1 320 0 441 290 68 17 chrX 41583974 41584150 -121015780 + REP3 LTR ERV 1 185 -377 1499 153 27 5 chrX 41584152 41584375 -121015555 - AluJb SINE Alu -19 293 66 2364 106 0 0 chrX 41584375 41584675 -121015255 + AluSx SINE Alu 1 301 -11 577 118 0 0 chrX 41584675 41584751 -121015179 - AluJb SINE Alu -235 77 2 228 206 0 96 chrX 41584753 41584826 -121015104 + REP3 LTR ERV 224 289 -273 2326 107 0 3 chrX 41584847 41585146 -121014784 - AluSx SINE Alu -14 298 1 1815 178 3 13 chrX 41585309 41585618 -121014312 + AluJb SINE Alu 1 306 -6 945 248 21 63 chrX 41585908 41586033 -121013897 + HERVL40 LTR ERVL 2050 2179 -3351 2119 138 0 7 chrX 41586033 41586331 -121013599 + AluSx SINE Alu 1 296 -16 945 248 21 63 chrX 41586331 41586491 -121013439 + HERVL40 LTR ERVL 2179 2323 -3207 402 294 175 6 chrX 41586513 41586690 -121013240 + HERVL40 LTR ERVL 3510 3716 -1814 4242 140 36 4 chrX 41586690 41587374 -121012556 + MER50 LTR ERV1 1 706 -28 2294 107 0 10 chrX 41587466 41587774 -121012156 + AluSx SINE Alu 3 307 -5 1966 156 14 0 chrX 41587809 41588104 -121011826 - AluJb SINE Alu -13 299 1 1478 134 14 0 chrX 41588608 41588831 -121011099 + AluJb SINE Alu 86 311 -1 4156 214 36 79 chrX 41588940 41589117 -121010813 + L1MDb LINE L1 640 823 -5583 1888 170 0 0 chrX 41589117 41589399 -121010531 + AluJo SINE Alu 1 282 -30 4156 214 36 79 chrX 41589399 41589604 -121010326 + L1MDb LINE L1 823 1035 -5371 2032 135 0 52 chrX 41589604 41589931 -121009999 + AluJb SINE Alu 1 310 -2 2321 112 0 13 chrX 41589941 41590255 -121009675 + AluSx SINE Alu 1 310 -2 4156 214 36 79 chrX 41590255 41590385 -121009545 + L1MDb LINE L1 1044 1178 -5228 1967 155 0 0 chrX 41590385 41590663 -121009267 + AluJb SINE Alu 2 279 -33 198 118 0 0 chrX 41590667 41590701 -121009229 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4156 214 36 79 chrX 41590701 41590790 -121009140 + L1MDb LINE L1 1181 1272 -5134 2240 106 14 0 chrX 41590790 41591083 -121008847 + AluSg SINE Alu 4 300 -10 2052 95 4 0 chrX 41591086 41591348 -121008582 + AluSp SINE Alu 6 268 -45 4156 214 36 79 chrX 41591348 41591621 -121008309 + L1MDb LINE L1 1274 1557 -4849 2192 124 0 10 chrX 41591621 41591927 -121008003 - AluSx SINE Alu -9 303 1 4156 214 36 79 chrX 41591927 41592285 -121007645 + L1MDb LINE L1 1557 1929 -4477 1702 202 21 39 chrX 41592285 41592666 -121007264 - MLT1A2 LTR MaLR 0 374 1 4156 214 36 79 chrX 41592666 41593081 -121006849 + L1MDb LINE L1 1929 2226 -4180 1377 183 12 120 chrX 41593081 41593490 -121006440 - MLT1A1 LTR MaLR 0 365 1 4156 214 36 79 chrX 41593490 41593644 -121006286 + L1MDb LINE L1 2226 2385 -4021 442 103 0 0 chrX 41593629 41593697 -121006233 + L1M2 LINE L1 5419 5486 -805 * 643 218 0 0 chrX 41593697 41593807 -121006123 + FLAM_A SINE Alu 1 110 -32 2464 88 3 0 chrX 41593813 41594119 -121005811 - AluSg SINE Alu -1 309 3 4433 147 47 2 chrX 41594132 41594919 -121005011 + L1MA7 LINE L1 5470 6291 0 1795 123 105 0 chrX 41594975 41595251 -121004679 - AluSx SINE Alu -7 305 1 362 94 0 0 chrX 41595251 41595304 -121004626 + MER4C LTR ERV1 404 456 -9 2247 115 3 0 chrX 41595304 41595608 -121004322 + AluSx SINE Alu 1 305 -7 468 65 0 0 chrX 41595645 41595707 -121004223 + MER4C LTR ERV1 404 465 0 514 185 65 130 chrX 41595707 41595779 -121004151 - L1MDa LINE L1 -6194 346 271 757 180 0 8 chrX 41595779 41595907 -121004023 - FLAM_A SINE Alu -4 129 3 514 185 65 130 chrX 41595907 41596050 -121003880 - L1MDa LINE L1 -6269 271 145 884 94 0 0 chrX 41596051 41596168 -121003762 + AluSg/x SINE Alu 184 300 -10 2321 81 112 13 chrX 41596168 41596551 -121003379 - MER4C LTR ERV1 -44 421 1 2324 98 10 0 chrX 41596588 41596884 -121003046 + AluSx SINE Alu 1 299 -13 1295 166 89 46 chrX 41596967 41597196 -121002734 + LTR49 LTR ERV1 1 250 -345 2128 113 28 0 chrX 41597196 41597512 -121002418 + AluSx SINE Alu 1 324 0 1295 166 89 46 chrX 41597512 41597606 -121002324 + LTR49 LTR ERV1 250 339 -256 680 186 10 7 chrX 41597581 41597779 -121002151 + LTR29 LTR ERV1 387 622 0 * 343 158 13 13 chrX 41597958 41598034 -121001896 + CT-rich Low_complexity Low_complexity 4 79 0 1921 135 64 10 chrX 41598034 41598331 -121001599 - AluSq SINE Alu 0 313 1 2426 77 0 7 chrX 41598331 41598629 -121001301 - AluSc SINE Alu -12 297 1 1648 135 19 98 chrX 41598635 41598960 -121000970 - AluJo SINE Alu -11 301 3 2312 125 3 3 chrX 41599009 41599321 -121000609 + AluSx SINE Alu 1 312 0 2215 113 0 0 chrX 41599418 41599736 -121000194 - AluSq SINE Alu 0 318 1 246 212 12 118 chrX 41599762 41599805 -121000125 + MER58A DNA MER1_type 2 33 -308 1831 86 8 4 chrX 41599805 41600048 -120999882 - AluSq SINE Alu -2 311 68 246 212 12 118 chrX 41600048 41600089 -120999841 + MER58A DNA MER1_type 33 77 -147 548 223 68 59 chrX 41600091 41600233 -120999697 + L1MD2 LINE L1 4316 4462 -1684 2551 64 0 3 chrX 41600233 41600531 -120999399 + AluSx SINE Alu 1 297 -15 548 223 68 59 chrX 41600531 41600608 -120999322 + L1MD2 LINE L1 4462 4537 -1609 1938 150 3 14 chrX 41600627 41600920 -120999010 + AluJb SINE Alu 5 294 -18 457 266 65 47 chrX 41600920 41601089 -120998841 + MER41C LTR ERV1 43 214 -340 1924 159 0 25 chrX 41601195 41601515 -120998415 - AluJb SINE Alu 0 312 1 606 251 23 0 chrX 41601516 41601687 -120998243 + L1MD2 LINE L1 5055 5229 -917 * 2409 201 119 42 chrX 41601677 41602218 -120997712 + L1MD2 LINE L1 5571 6183 -176 207 0 0 0 chrX 41602218 41602241 -120997689 + (CA)n Simple_repeat Simple_repeat 2 24 0 2409 201 119 42 chrX 41602241 41602422 -120997508 + L1MD2 LINE L1 6183 6349 -10 1930 139 0 60 chrX 41602432 41602564 -120997366 + AluJb SINE Alu 9 147 -165 2565 77 0 0 chrX 41602564 41602875 -120997055 + AluY SINE Alu 1 311 0 1930 139 0 60 chrX 41602875 41603059 -120996871 + AluJb SINE Alu 147 306 -6 1770 184 57 28 chrX 41603524 41603877 -120996053 - MLT1A1 LTR MaLR 0 365 3 2340 119 0 0 chrX 41603939 41604249 -120995681 - AluSx SINE Alu -2 310 1 876 141 0 0 chrX 41604332 41604460 -120995470 + AluJ SINE Alu 1 128 -174 1704 139 28 3 chrX 41604460 41604739 -120995191 + L1PA13 LINE L1 5872 6160 -3 472 200 111 0 chrX 41604743 41604833 -120995097 + AluJ SINE Alu 121 220 -92 3877 102 60 6 chrX 41604833 41605383 -120994547 + LTR19B LTR ERV1 1 580 0 54080 91 18 9 chrX 41605383 41605696 -120994234 + HERVFH19I LTR ERV1 1 310 -7409 204 40 0 0 chrX 41605696 41605721 -120994209 + (TC)n Simple_repeat Simple_repeat 2 26 0 54080 91 18 9 chrX 41605721 41613058 -120986872 + HERVFH19I LTR ERV1 310 7716 -3 3841 111 54 13 chrX 41613061 41613618 -120986312 + LTR19B LTR ERV1 1 580 0 599 71 36 0 chrX 41613618 41613702 -120986228 + AluJ SINE Alu 216 302 -10 1972 112 0 68 chrX 41613704 41613837 -120986093 + AluSx SINE Alu 3 144 -168 2459 84 0 3 chrX 41613837 41614136 -120985794 + AluSq SINE Alu 1 298 -15 1972 112 0 68 chrX 41614136 41614323 -120985607 + AluSx SINE Alu 144 301 -11 1193 107 0 0 chrX 41614722 41614881 -120985049 - AluSg/x SINE Alu -15 297 139 2253 102 0 16 chrX 41614885 41614901 -120985029 - AluSq SINE Alu -14 299 284 378 0 0 0 chrX 41614901 41614943 -120984987 + (TG)n Simple_repeat Simple_repeat 2 43 0 2253 102 0 16 chrX 41614943 41615230 -120984700 - AluSq SINE Alu -29 284 1 746 211 240 66 chrX 41615291 41615732 -120984198 + REP3 LTR ERV 1 518 -44 209 333 9 27 chrX 41616150 41616261 -120983669 - MIR SINE MIR -71 191 83 1807 147 0 35 chrX 41616420 41616705 -120983225 + AluJb SINE Alu 21 295 -17 426 181 52 0 chrX 41616714 41616830 -120983100 + GA-rich Low_complexity Low_complexity 5 126 0 1012 129 14 0 chrX 41616923 41617101 -120982829 + AluSg/x SINE Alu 143 312 0 209 30 61 0 chrX 41617756 41617789 -120982141 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1110 115 11 71 chrX 41617909 41618055 -120981875 + FRAM SINE Alu 1 135 -177 1564 182 55 4 chrX 41618055 41618330 -120981600 - AluJo SINE Alu -23 289 1 1110 115 11 71 chrX 41618330 41618365 -120981565 + FRAM SINE Alu 135 171 -5 2236 110 3 0 chrX 41618479 41618769 -120981161 + AluSx SINE Alu 1 291 -21 2322 80 0 7 chrX 41618771 41619057 -120980873 + AluSc SINE Alu 1 284 -25 229 0 83 0 chrX 41619060 41619096 -120980834 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 346 213 43 0 chrX 41619098 41619192 -120980738 - MER113 DNA MER1_type? -412 109 12 25 65 0 0 chrX 41619243 41619289 -120980641 + AT_rich Low_complexity Low_complexity 1 46 0 1861 168 0 26 chrX 41619340 41619672 -120980258 - AluSx SINE Alu 0 312 1 481 250 0 0 chrX 41619729 41619833 -120980097 - U13 snRNA snRNA 0 104 1 2208 88 10 14 chrX 41620193 41620553 -120979377 - AluSp SINE Alu 0 313 1 1984 124 28 0 chrX 41620713 41620995 -120978935 + AluJb SINE Alu 1 290 -22 2128 114 0 27 chrX 41621010 41621307 -120978623 + AluSx SINE Alu 8 296 -16 451 129 54 32 chrX 41621372 41621465 -120978465 - AluSg/x SINE Alu -6 306 212 2300 99 0 7 chrX 41621551 41621855 -120978075 - AluSx SINE Alu -10 302 1 2319 112 0 0 chrX 41622373 41622678 -120977252 + AluSg SINE Alu 1 305 -5 792 139 47 16 chrX 41622689 41622818 -120977112 + AluJo/FLAM SINE Alu 1 133 -169 2195 91 21 0 chrX 41622821 41623106 -120976824 + AluSx SINE Alu 1 291 -21 192 77 0 0 chrX 41623107 41623133 -120976797 + (CGAGG)n Simple_repeat Simple_repeat 2 27 0 316 153 0 22 chrX 41623149 41623213 -120976717 + FLAM_A SINE Alu 18 63 -70 1472 214 76 24 chrX 41623222 41623605 -120976325 + L1MD1 LINE L1 5681 6083 -159 1035 194 52 9 chrX 41623615 41623847 -120976083 + L1MD2 LINE L1 6108 6349 -10 2309 93 3 0 chrX 41623857 41624168 -120975762 + AluSp SINE Alu 1 312 -1 891 192 66 20 chrX 41624174 41624499 -120975431 + L1MC4 LINE L1 6993 7486 -556 1112 113 0 0 chrX 41624728 41624878 -120975052 + AluSq/x SINE Alu 1 150 -163 1723 75 9 0 chrX 41624879 41625106 -120974824 + AluSp SINE Alu 73 301 -12 266 244 158 0 chrX 41626733 41626815 -120973115 + L2 LINE L2 3171 3265 -7 605 154 9 0 chrX 41626838 41626948 -120972982 + L1MC4 LINE L1 7471 7581 -461 1962 102 37 3 chrX 41626955 41627249 -120972681 - AluSx SINE Alu -6 306 3 1831 166 0 0 chrX 41627258 41627565 -120972365 - AluJo SINE Alu -5 307 1 574 273 220 11 chrX 41627567 41627670 -120972260 + L1MC4 LINE L1 7694 7774 -268 2091 115 0 3 chrX 41627670 41627974 -120971956 - AluSx SINE Alu -9 303 1 574 273 220 11 chrX 41627974 41628156 -120971774 + L1MC4 LINE L1 7774 8039 -3 1877 110 51 3 chrX 41628192 41628484 -120971446 - AluSg SINE Alu -4 306 1 2340 60 0 17 chrX 41628503 41628803 -120971127 + AluY SINE Alu 1 295 -16 229 300 0 0 chrX 41628809 41628869 -120971061 - L1MC5 LINE L1 -70 7891 7832 458 215 8 77 chrX 41628913 41629010 -120970920 - MIR SINE MIR -140 122 35 2426 55 0 16 chrX 41629010 41629318 -120970612 - AluY SINE Alu -8 303 1 458 215 8 77 chrX 41629318 41629350 -120970580 - MIR SINE MIR -227 35 2 2184 102 3 3 chrX 41629463 41629776 -120970154 - AluSq SINE Alu 0 313 1 671 254 75 32 chrX 41629779 41630058 -120969872 - L1MC4 LINE L1 -152 7890 7600 646 171 0 54 chrX 41630096 41630225 -120969705 + FLAM_C SINE Alu 19 140 -3 1066 200 0 14 chrX 41630234 41630444 -120969486 - AluJb SINE Alu -15 297 91 745 143 0 0 chrX 41630508 41630620 -120969310 + FLAM_C SINE Alu 4 115 -18 1082 129 134 0 chrX 41631761 41631844 -120968086 + MER30 DNA MER1_type 20 90 -140 188 35 35 0 chrX 41631844 41631873 -120968057 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1082 129 134 0 chrX 41631873 41631975 -120967955 + MER30 DNA MER1_type 90 230 0 2009 87 7 24 chrX 41632454 41632752 -120967178 - AluSc SINE Alu -16 293 1 1646 184 0 10 chrX 41632752 41633057 -120966873 - AluJo SINE Alu -10 302 1 1011 180 184 16 chrX 41633298 41633416 -120966514 + AluJb SINE Alu 1 98 -204 255 61 0 0 chrX 41633416 41633449 -120966481 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1011 180 184 16 chrX 41633449 41633575 -120966355 + AluJb SINE Alu 98 286 -16 306 139 23 151 chrX 41633597 41633683 -120966247 + Alu SINE Alu 245 302 0 1398 159 35 35 chrX 41633724 41634007 -120965923 - AluJb SINE Alu -12 300 18 776 108 62 31 chrX 41634016 41634145 -120965785 - FLAM_C SINE Alu 0 133 1 29 28 0 0 chrX 41634154 41634190 -120965740 + AT_rich Low_complexity Low_complexity 1 36 0 2341 262 24 11 chrX 41634195 41634598 -120965332 + L1MD2 LINE L1 4439 4856 -1290 1961 141 3 6 chrX 41634598 41634910 -120965020 - AluSx SINE Alu -1 311 1 2341 262 24 11 chrX 41634910 41635227 -120964703 + L1MD2 LINE L1 4856 5168 -978 712 187 22 14 chrX 41635227 41635366 -120964564 + FLAM_C SINE Alu 2 141 -2 498 206 42 0 chrX 41635409 41635578 -120964352 + L1MD2 LINE L1 5221 5395 -751 1019 178 0 43 chrX 41635583 41635791 -120964139 + AluJo SINE Alu 1 199 -113 1373 200 73 22 chrX 41635800 41636411 -120963519 + L1MD2 LINE L1 5681 6330 -29 1888 137 0 0 chrX 41636420 41636731 -120963199 - AluSx SINE Alu 0 311 1 1685 179 0 0 chrX 41636736 41637032 -120962898 - AluJo SINE Alu -16 296 1 805 214 39 28 chrX 41637034 41637216 -120962714 + L1MC4 LINE L1 7694 7877 -165 2056 101 0 32 chrX 41637217 41637525 -120962405 - AluSg SINE Alu -12 298 1 237 224 0 0 chrX 41637602 41637651 -120962279 + L1MC4 LINE L1 7991 8039 -3 2244 104 0 0 chrX 41637689 41637988 -120961942 - AluSq SINE Alu -14 299 1 1934 146 0 0 chrX 41637998 41638307 -120961623 - AluJb SINE Alu -2 310 2 1463 168 3 70 chrX 41638337 41638665 -120961265 + AluJo SINE Alu 1 306 -6 333 288 196 29 chrX 41638676 41638795 -120961135 + L1M4 LINE L1 2965 3063 -3083 2190 91 0 3 chrX 41638795 41639092 -120960838 + AluSx SINE Alu 5 300 -12 333 288 196 29 chrX 41639092 41639212 -120960718 + L1M4 LINE L1 3063 3244 -2902 420 104 134 0 chrX 41639255 41639322 -120960608 + AluS SINE Alu 2 77 -236 2074 105 0 20 chrX 41639386 41639691 -120960239 - AluSg SINE Alu -11 299 1 926 178 6 0 chrX 41639694 41639868 -120960062 - AluJb SINE Alu -8 304 130 1814 129 13 42 chrX 41639885 41640195 -120959735 + AluSx SINE Alu 1 301 -11 2211 93 0 16 chrX 41640195 41640505 -120959425 + AluSq SINE Alu 1 305 -8 811 137 0 23 chrX 41640522 41640653 -120959277 + AluSg/x SINE Alu 180 307 -3 202 137 0 78 chrX 41641136 41641187 -120958743 + (GGGTG)n Simple_repeat Simple_repeat 5 51 0 1915 91 0 30 chrX 41641438 41641561 -120958369 - AluSx SINE Alu -55 257 132 180 0 0 0 chrX 41641561 41641581 -120958349 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2147 82 0 4 chrX 41641584 41641864 -120958066 - AluSg SINE Alu -31 279 1 1915 91 0 30 chrX 41641864 41642001 -120957929 - AluSx SINE Alu -182 130 1 1311 184 90 4 chrX 41642002 41642268 -120957662 - AluJb SINE Alu -15 297 9 292 43 21 21 chrX 41642331 41642378 -120957552 + (TG)n Simple_repeat Simple_repeat 2 48 0 1544 127 8 8 chrX 41642734 41642979 -120956951 - AluJb SINE Alu -67 245 1 2173 170 33 2 chrX 41642979 41643409 -120956521 - L1MC/D LINE L1 -692 5927 5485 5010 224 45 99 chrX 41643563 41643736 -120956194 - L1MC/D LINE L1 -895 5511 5330 2347 67 0 3 chrX 41643736 41644036 -120955894 + AluSc SINE Alu 1 299 -10 5010 224 45 99 chrX 41644036 41644050 -120955880 - L1MC/D LINE L1 -1076 5330 5317 2201 96 0 0 chrX 41644050 41644342 -120955588 + AluSq SINE Alu 2 293 -20 5010 224 45 99 chrX 41644342 41644839 -120955091 - L1MC/D LINE L1 -1089 5317 4795 1661 159 14 10 chrX 41644839 41645129 -120954801 - AluJb SINE Alu -21 291 1 5010 224 45 99 chrX 41645129 41645378 -120954552 - L1MC/D LINE L1 -1611 4795 4534 1327 209 61 0 chrX 41645378 41645655 -120954275 - AluJo SINE Alu -18 294 1 5010 224 45 99 chrX 41645655 41645892 -120954038 - L1MC/D LINE L1 -1872 4534 4286 1914 129 11 3 chrX 41645892 41646178 -120953752 + AluJb SINE Alu 1 288 -24 5010 224 45 99 chrX 41646178 41646381 -120953549 - L1MC/D LINE L1 -2120 4286 4074 2284 99 0 0 chrX 41646381 41646683 -120953247 - AluSx SINE Alu -10 302 1 5010 224 45 99 chrX 41646683 41646975 -120952955 - L1MC/D LINE L1 -2332 4074 3768 2105 96 0 3 chrX 41646975 41647370 -120952560 - AluSx SINE Alu 0 394 1 5010 224 45 99 chrX 41647370 41647395 -120952535 - L1MC/D LINE L1 -2638 3768 3743 2193 108 0 0 chrX 41647395 41647691 -120952239 + AluSg SINE Alu 1 296 -14 5010 224 45 99 chrX 41647691 41648142 -120951788 - L1MC/D LINE L1 -2663 3743 3478 2194 89 0 0 chrX 41648144 41648425 -120951505 - AluSx SINE Alu -17 295 15 1820 131 11 3 chrX 41648455 41648738 -120951192 - AluJb SINE Alu -13 299 15 1083 222 15 18 chrX 41648749 41649078 -120950852 - L1MC/D LINE L1 -3525 2881 2554 1923 153 0 3 chrX 41649080 41649388 -120950542 - AluJo SINE Alu -5 307 1 969 191 25 50 chrX 41649393 41649676 -120950254 - L1MC/D LINE L1 -3961 2445 2170 2100 94 3 7 chrX 41649678 41649975 -120949955 - AluSq SINE Alu -17 296 1 1712 188 41 6 chrX 41650037 41650357 -120949573 + MER74A LTR ERVL 3 333 -225 2069 116 0 3 chrX 41650392 41650684 -120949246 - AluSg SINE Alu -19 291 1 2004 133 10 7 chrX 41650684 41650992 -120948938 - AluSx SINE Alu -3 309 1 1451 99 5 5 chrX 41651007 41651218 -120948712 - AluSq SINE Alu -14 299 89 213 64 0 64 chrX 41651220 41651267 -120948663 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 772 153 17 17 chrX 41651271 41651448 -120948482 + CT-rich Low_complexity Low_complexity 1 177 0 1685 151 13 32 chrX 41651448 41651759 -120948171 - AluJb SINE Alu -7 305 1 411 145 0 0 chrX 41651759 41651821 -120948109 + MER74A LTR ERVL 476 537 -21 1569 218 24 18 chrX 41651829 41652164 -120947766 - MLT1A1 LTR MaLR 0 365 29 1749 187 86 137 chrX 41652179 41652193 -120947737 - L1MC/D LINE L1 -4202 2204 2191 2233 113 0 0 chrX 41652193 41652504 -120947426 - AluSx SINE Alu -1 311 1 1749 187 86 137 chrX 41652504 41652779 -120947151 - L1MC/D LINE L1 -4215 2191 1903 1834 173 0 3 chrX 41652779 41653092 -120946838 - AluJo SINE Alu 0 312 1 1749 187 86 137 chrX 41653092 41653475 -120946455 - L1MC/D LINE L1 -4503 1903 1582 2166 113 3 0 chrX 41653475 41653786 -120946144 - AluSq SINE Alu 0 313 2 1749 187 86 137 chrX 41653786 41653973 -120945957 - L1MC/D LINE L1 -4824 1582 1387 1720 147 51 56 chrX 41653979 41654354 -120945576 + THE1C LTR MaLR 1 373 -2 1839 103 0 55 chrX 41654355 41654647 -120945283 + AluSx SINE Alu 1 276 -36 308 43 22 0 chrX 41654650 41654696 -120945234 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1295 111 5 0 chrX 41654696 41654885 -120945045 + AluSp SINE Alu 124 313 0 893 160 11 23 chrX 41654896 41655071 -120944859 - L1MC/D LINE L1 -5017 1392 1220 2129 121 0 0 chrX 41655072 41655369 -120944561 - AluSq SINE Alu -16 297 1 600 179 98 0 chrX 41655396 41655519 -120944411 - AluJb SINE Alu -176 136 2 898 107 25 61 chrX 41655523 41655720 -120944210 - L1MC/D LINE L1 -5189 1220 1031 686 93 0 0 chrX 41655743 41655829 -120944101 - U6 snRNA snRNA -21 86 1 552 193 0 0 chrX 41655829 41655938 -120943992 - L1MC/D LINE L1 -5366 1043 935 2255 83 63 109 chrX 41655952 41655979 -120943951 - L1MA8 LINE L1 -5 6286 6259 201 39 0 0 chrX 41655979 41656005 -120943925 + (TA)n Simple_repeat Simple_repeat 1 26 0 2255 83 63 109 chrX 41656005 41656151 -120943779 - L1MA8 LINE L1 -32 6259 6108 1957 133 0 0 chrX 41656151 41656445 -120943485 - AluJb SINE Alu -18 294 1 2255 83 63 109 chrX 41656445 41656477 -120943453 - L1MA8 LINE L1 -183 6108 6076 1616 148 35 11 chrX 41656477 41656761 -120943169 + AluJo SINE Alu 8 298 -14 2255 83 63 109 chrX 41656761 41657010 -120942920 - L1MA8 LINE L1 -215 6076 5851 401 86 0 111 chrX 41657016 41657077 -120942853 - L1MA8 LINE L1 -640 5660 5608 1779 152 0 13 chrX 41657077 41657379 -120942551 - AluJo SINE Alu -14 298 1 401 86 0 111 chrX 41657379 41657398 -120942532 - L1MA8 LINE L1 -692 5608 5589 * 1448 176 40 4 chrX 41657389 41657662 -120942268 - L1MC/D LINE L1 -5451 958 676 482 0 0 17 chrX 41657703 41657762 -120942168 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 991 59 5 65 chrX 41657784 41657970 -120941960 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1668 159 4 0 chrX 41657970 41658247 -120941683 - AluJo SINE Alu -34 278 1 552 282 29 6 chrX 41658274 41658444 -120941486 - L1MC/D LINE L1 -5816 593 420 * 1989 260 12 76 chrX 41658440 41658954 -120940976 - L1MC/D LINE L1 -5790 619 155 2267 96 3 0 chrX 41658954 41659256 -120940674 - AluSp SINE Alu -10 303 1 1989 260 12 76 chrX 41659256 41659398 -120940532 - L1MC/D LINE L1 -6254 155 5 2231 86 13 0 chrX 41659469 41659642 -120940288 - AluY SINE Alu -6 305 125 216 0 0 0 chrX 41659642 41659666 -120940264 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2231 86 13 0 chrX 41659666 41659793 -120940137 - AluY SINE Alu -186 125 1 2033 135 0 0 chrX 41659793 41660090 -120939840 - AluSq SINE Alu -16 297 1 2322 47 0 10 chrX 41660094 41660391 -120939539 - AluY SINE Alu -17 294 1 910 150 0 0 chrX 41660403 41660536 -120939394 - FLAM_C SINE Alu 0 133 1 1277 130 73 120 chrX 41660722 41661038 -120938892 - AluJb SINE Alu 0 302 2 2191 99 0 0 chrX 41661041 41661334 -120938596 - AluSx SINE Alu -19 293 1 2532 48 0 6 chrX 41661366 41661678 -120938252 + AluY SINE Alu 1 310 -1 2502 122 40 40 chrX 41661684 41661722 -120938208 - MSTA LTR MaLR -3 425 388 2379 79 0 0 chrX 41661722 41662026 -120937904 + AluSc SINE Alu 1 304 -5 2238 67 3 19 chrX 41662026 41662341 -120937589 + AluY SINE Alu 1 311 0 2502 122 40 40 chrX 41662341 41662726 -120937204 - MSTA LTR MaLR -38 390 1 721 156 0 0 chrX 41662730 41662839 -120937091 - FLAM_C SINE Alu -32 111 3 487 199 94 64 chrX 41662844 41663015 -120936915 - MER21B LTR ERV1 -22 841 666 570 134 0 52 chrX 41663016 41663113 -120936817 + MER50 LTR ERV1 2 93 -641 404 164 15 0 chrX 41663123 41663190 -120936740 - MER21B LTR ERV1 -203 660 593 1954 138 10 0 chrX 41663190 41663495 -120936435 - AluSx SINE Alu -4 308 1 629 118 0 0 chrX 41663495 41663580 -120936350 - AluJ/FLAM SINE Alu -219 93 9 1820 144 57 3 chrX 41663585 41663883 -120936047 - MER21B LTR ERV1 -548 315 2 1760 145 32 3 chrX 41663916 41664198 -120935732 + AluJb SINE Alu 1 290 -22 822 199 7 0 chrX 41664274 41664454 -120935476 + FRAM SINE Alu 1 181 0 294 164 15 0 chrX 41664458 41664525 -120935405 + Charlie5 DNA MER1_type 55 122 -2490 1188 157 22 56 chrX 41664603 41664651 -120935279 + Charlie5 DNA MER1_type 2243 2291 -333 1619 193 0 3 chrX 41664651 41664962 -120934968 - AluJo SINE Alu -2 310 1 1188 157 22 56 chrX 41664962 41664973 -120934957 + Charlie5 DNA MER1_type 2291 2301 -323 1820 107 68 4 chrX 41664973 41665254 -120934676 - AluSp SINE Alu -12 301 3 1188 157 22 56 chrX 41665254 41665517 -120934413 + Charlie5 DNA MER1_type 2301 2555 -69 552 165 48 0 chrX 41665564 41665667 -120934263 - LTR65 LTR ERV1 -357 312 205 1903 68 109 0 chrX 41666458 41666724 -120933206 - AluSg SINE Alu -15 295 1 2249 190 24 60 chrX 41666945 41667047 -120932883 - LTR65 LTR ERV1 -20 649 545 487 232 27 9 chrX 41667047 41667159 -120932771 - MER81 DNA DNA 0 114 1 2249 190 24 60 chrX 41667159 41667342 -120932588 - LTR65 LTR ERV1 -124 545 357 2127 97 3 0 chrX 41667342 41667630 -120932300 + AluSx SINE Alu 1 289 -23 2249 190 24 60 chrX 41667630 41667643 -120932287 - LTR65 LTR ERV1 -312 357 345 1772 149 33 13 chrX 41667643 41667944 -120931986 + AluJb SINE Alu 1 307 -5 2249 190 24 60 chrX 41667944 41668142 -120931788 - LTR65 LTR ERV1 -324 345 169 588 174 0 10 chrX 41668144 41668242 -120931688 - MER96B DNA MER1_type? 0 417 321 1442 141 74 19 chrX 41668248 41668517 -120931413 - AluJb SINE Alu -28 284 1 1993 123 0 17 chrX 41668530 41668831 -120931099 - AluSx SINE Alu -16 296 1 201 74 0 0 chrX 41668832 41668859 -120931071 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 1487 190 7 3 chrX 41668859 41669154 -120930776 - AluJb SINE Alu -16 296 1 1862 138 3 26 chrX 41669176 41669480 -120930450 - AluJo SINE Alu -15 297 1 2295 69 23 0 chrX 41669530 41669835 -120930095 + AluSp SINE Alu 1 312 -1 376 232 17 99 chrX 41670773 41670954 -120928976 - L1M4 LINE L1 -2885 3261 3096 213 39 0 0 chrX 41671057 41671083 -120928847 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1764 125 7 4 chrX 41671083 41671362 -120928568 - AluSx SINE Alu -32 280 1 1375 125 62 92 chrX 41671435 41671740 -120928190 + AluJb SINE Alu 1 296 -16 580 230 58 100 chrX 41671740 41671844 -120928086 - L1M4 LINE L1 -1715 4431 4324 2105 105 9 25 chrX 41671844 41672159 -120927771 + AluSg SINE Alu 1 310 0 580 230 58 100 chrX 41672159 41672356 -120927574 - L1M4 LINE L1 -1822 4324 4141 1504 112 48 32 chrX 41672383 41672633 -120927297 - AluSx SINE Alu 0 312 59 427 130 0 0 chrX 41872633 41872702 -120727228 + AluS SINE Alu 232 300 -10 300 116 0 0 chrX 41872708 41872751 -120727179 + L1MB1 LINE L1 6124 6166 -2 1927 136 16 52 chrX 41872754 41872839 -120727091 + L1MB8 LINE L1 5811 5898 -280 1854 110 46 4 chrX 41872839 41873120 -120726810 + AluSx SINE Alu 1 293 -19 1927 136 16 52 chrX 41873120 41873416 -120726514 + L1MB8 LINE L1 5898 6178 0 231 269 0 0 chrX 41873457 41873509 -120726421 + L2 LINE L2 3262 3313 0 376 333 65 27 chrX 41873522 41873708 -120726222 + L1ME LINE L1 4031 4223 -1923 366 288 101 19 chrX 41873923 41873990 -120725940 + L1ME LINE L1 4596 4656 -1490 2179 108 0 10 chrX 41873990 41874296 -120725634 + AluSg SINE Alu 1 303 -7 366 288 101 19 chrX 41874296 41874652 -120725278 + L1ME LINE L1 4656 5054 -1092 516 264 97 23 chrX 41874832 41875131 -120724799 + L1ME LINE L1 5283 5603 -559 419 224 155 6 chrX 41875170 41875331 -120724599 + L1M4 LINE L1 2790 2974 -3172 1465 145 21 55 chrX 41875337 41875626 -120724304 + AluJo SINE Alu 15 293 -19 1286 133 9 5 chrX 41875627 41875837 -120724093 + AluJo SINE Alu 86 296 -16 412 283 44 52 chrX 41875848 41876085 -120723845 + L1M4 LINE L1 2954 3214 -2932 232 293 121 32 chrX 41878065 41878222 -120721708 - L1M4 LINE L1 -3313 2833 2663 188 67 33 0 chrX 41878327 41878357 -120721573 + (GA)n Simple_repeat Simple_repeat 2 32 0 249 253 52 55 chrX 41878557 41878749 -120721181 - L1P5 LINE L1 -726 5430 5243 249 93 0 47 chrX 41878932 41878975 -120720955 + Alu SINE Alu 107 147 -154 1200 126 6 0 chrX 41878988 41879171 -120720759 + AluSg/x SINE Alu 119 302 -8 1561 209 96 96 chrX 41879432 41880039 -120719891 - MER92B LTR ERV1 -29 607 1 1991 121 7 3 chrX 41880304 41880602 -120719328 + AluSx SINE Alu 1 299 -13 2172 98 17 0 chrX 41880618 41880913 -120719017 + AluSx SINE Alu 2 301 -11 581 304 98 63 chrX 41880913 41881201 -120718729 - L1M4 LINE L1 -1534 4612 4302 1469 174 43 4 chrX 41881201 41881477 -120718453 - AluJb SINE Alu -6 306 20 581 304 98 63 chrX 41881477 41881629 -120718301 - L1M4 LINE L1 -1844 4302 4157 937 143 87 41 chrX 41881639 41881675 -120718255 - MER3 DNA MER1_type -4 205 172 1911 150 10 0 chrX 41881675 41881982 -120717948 - AluJb SINE Alu -2 310 1 937 143 87 41 chrX 41881982 41882141 -120717789 - MER3 DNA MER1_type -37 172 1 269 293 10 10 chrX 41882196 41882295 -120717635 - L1P5 LINE L1 -2017 4129 4031 1688 149 53 0 chrX 41882341 41882623 -120717307 - AluJb SINE Alu -11 301 5 2166 117 0 0 chrX 41882633 41882940 -120716990 - AluSx SINE Alu -5 307 1 2321 78 3 0 chrX 41882969 41883263 -120716667 + AluSp SINE Alu 1 295 -18 369 93 0 0 chrX 41883586 41883640 -120716290 + (CA)n Simple_repeat Simple_repeat 1 54 0 685 236 119 118 chrX 41883926 41884413 -120715517 + MLT1G1 LTR MaLR 1 491 -104 1430 183 26 33 chrX 41884413 41884719 -120715211 + AluJo SINE Alu 3 306 -6 685 236 119 118 chrX 41884719 41884825 -120715105 + MLT1G1 LTR MaLR 491 595 0 1396 199 54 7 chrX 41885100 41885396 -120714534 - AluJb SINE Alu -2 310 1 2019 211 65 27 chrX 41885427 41885844 -120714086 - MER77 LTR ERV1 -6 599 100 2388 116 0 23 chrX 41885844 41886189 -120713741 - MER1B DNA MER1_type 0 337 1 2019 211 65 27 chrX 41886189 41886291 -120713639 - MER77 LTR ERV1 -505 100 3 1757 156 7 13 chrX 41886391 41886699 -120713231 - AluJb SINE Alu -6 306 1 2342 87 3 0 chrX 41886798 41887109 -120712821 - AluSx SINE Alu 0 312 1 4209 159 52 14 chrX 41887162 41887847 -120712083 - MER21B LTR ERV1 -113 750 36 2564 116 83 5 chrX 41887847 41888244 -120711686 - MSTA LTR MaLR 0 428 1 4209 159 52 14 chrX 41888244 41888267 -120711663 - MER21B LTR ERV1 -827 36 15 1238 87 46 26 chrX 41888295 41888440 -120711490 - L1MA8 LINE L1 -40 6251 6100 2423 112 21 24 chrX 41888440 41888816 -120711114 - THE1C LTR MaLR 0 375 1 1238 87 46 26 chrX 41888816 41888865 -120711065 - L1MA8 LINE L1 -191 6100 6053 857 221 84 33 chrX 41888874 41889298 -120710632 - MLT1D LTR MaLR -8 497 5 5228 185 33 99 chrX 41889302 41890207 -120709723 - MLT1D-int LTR MaLR -1 1370 597 2037 125 23 0 chrX 41890207 41890512 -120709418 - AluSx SINE Alu 0 312 1 5228 185 33 99 chrX 41890512 41891070 -120708860 - MLT1D-int LTR MaLR -774 597 4 1795 191 153 18 chrX 41891071 41891510 -120708420 - MLT1D LTR MaLR -7 498 1 421 309 79 76 chrX 41891842 41892245 -120707685 + HAL1b LINE L1 -4 255 -1076 497 196 0 0 chrX 41892251 41892343 -120707587 + L1MEc LINE L1 38 129 -6267 1758 141 6 55 chrX 41892343 41892670 -120707260 + AluSx SINE Alu 1 311 -1 1677 135 2 148 chrX 41892677 41892916 -120707014 - LTR8 LTR ERV1 -349 342 183 2051 118 7 7 chrX 41892916 41893213 -120706717 + AluSx SINE Alu 1 297 -15 1677 135 2 148 chrX 41893213 41893373 -120706557 - LTR8 LTR ERV1 -508 183 1 1841 194 19 13 chrX 41893403 41893779 -120706151 + MER68 LTR ERV1 2 423 -182 10561 151 21 20 chrX 41893779 41894079 -120705851 + HERVL68 LTR ERVL 34 332 -2705 2014 121 0 0 chrX 41894079 41894404 -120705526 + AluSx SINE Alu 1 325 0 10561 151 21 20 chrX 41894404 41894745 -120705185 + HERVL68 LTR ERVL 332 671 -2366 2557 140 74 0 chrX 41894745 41895166 -120704764 + LTR47A LTR ERVL 1 452 0 10561 151 21 20 chrX 41895166 41896301 -120703629 + HERVL68 LTR ERVL 671 1814 -1223 2001 113 33 0 chrX 41896301 41896643 -120703287 - AluJb SINE Alu 0 352 1 6854 143 8 7 chrX 41896643 41897735 -120702195 + HERVL68 LTR ERVL 1794 2886 -151 1141 96 25 61 chrX 41897736 41897748 -120702182 - AluJo SINE Alu -14 298 287 369 0 0 0 chrX 41897748 41897789 -120702141 + (TG)n Simple_repeat Simple_repeat 2 42 0 1141 96 25 61 chrX 41897789 41897974 -120701956 - AluJo SINE Alu -25 287 108 2409 91 43 14 chrX 41897976 41898368 -120701562 - MLT2A1 LTR ERVL 0 453 1 703 140 0 0 chrX 41898369 41898476 -120701454 - AluJo SINE Alu -201 111 5 849 130 36 0 chrX 41898480 41898618 -120701312 + HERVL68 LTR ERVL 2884 3026 -11 2269 226 25 27 chrX 41898620 41899178 -120700752 + MER68 LTR ERV1 4 560 -2 2373 81 0 3 chrX 41899272 41899582 -120700348 + AluSx SINE Alu 1 309 -3 2490 202 82 70 chrX 41899590 41899697 -120700233 + L1MC5 LINE L1 6508 6612 -1349 315 0 0 0 chrX 41899697 41899732 -120700198 + (CA)n Simple_repeat Simple_repeat 1 35 0 2490 202 82 70 chrX 41899732 41900530 -120699400 + L1MC5 LINE L1 6612 7429 -532 251 221 76 55 chrX 41900704 41900849 -120699081 + L1ME3A LINE L1 6021 6168 -2 2183 103 3 0 chrX 41900912 41901213 -120698717 + AluSq SINE Alu 1 302 -11 2292 92 9 0 chrX 41901661 41901978 -120697952 - L1MB2 LINE L1 -3 6168 5849 2155 107 10 0 chrX 41901992 41902300 -120697630 - AluSx SINE Alu -1 311 1 765 180 16 0 chrX 41902304 41902432 -120697498 - FLAM_C SINE Alu -3 130 1 264 280 54 21 chrX 41902832 41902925 -120697005 - L1ME LINE L1 -5912 158 63 238 302 0 0 chrX 41902922 41902985 -120696945 - L1M4 LINE L1 -5604 938 876 * 363 301 32 32 chrX 41903560 41903779 -120696151 - L1M4 LINE L1 -6307 235 17 705 100 82 0 chrX 41903836 41903946 -120695984 - FLAM_C SINE Alu -14 119 1 2339 82 0 13 chrX 41908342 41908657 -120691273 - AluSx SINE Alu -1 311 1 800 178 59 30 chrX 41908672 41908841 -120691089 + MER20B DNA MER1_type 1 174 -45 762 153 79 23 chrX 41909286 41909463 -120690467 + L1MCa LINE L1 50 236 -6190 1973 81 0 0 chrX 41909623 41909882 -120690048 - AluSx SINE Alu -5 307 49 2466 128 25 48 chrX 41909894 41910097 -120689833 - L1MB2 LINE L1 -262 5909 5703 1487 192 0 0 chrX 41910097 41910357 -120689573 + AluJo SINE Alu 1 260 -52 2466 128 25 48 chrX 41910357 41910591 -120689339 - L1MB2 LINE L1 -468 5703 5482 187 54 54 0 chrX 41910866 41910903 -120689027 + A-rich Low_complexity Low_complexity 2 40 0 1921 148 0 3 chrX 41910912 41911216 -120688714 + AluJb SINE Alu 1 303 -9 747 240 72 67 chrX 41911217 41911563 -120688367 + L1MA9 LINE L1 5935 6282 -30 2156 128 0 0 chrX 41911581 41911893 -120688037 + AluSx SINE Alu 1 312 0 1194 162 0 15 chrX 41913001 41913205 -120686725 + AluJb SINE Alu 86 286 -26 360 0 0 0 chrX 41913277 41913317 -120686613 + (TA)n Simple_repeat Simple_repeat 2 41 0 2257 96 0 0 chrX 41913317 41913620 -120686310 - AluSx SINE Alu -9 303 1 930 120 0 0 chrX 41913662 41913795 -120686135 - FLAM_C SINE Alu 0 133 1 1126 113 5 0 chrX 41913837 41914031 -120685899 - Charlie5 DNA MER1_type 0 2624 2430 1472 124 8 64 chrX 41914070 41914285 -120685645 + L1M3 LINE L1 5454 5653 -518 1605 156 6 75 chrX 41914285 41914494 -120685436 + AluJb SINE Alu 2 181 -131 2207 91 7 0 chrX 41914494 41914792 -120685138 - AluSx SINE Alu -12 300 1 1605 156 6 75 chrX 41914792 41914916 -120685014 + AluJb SINE Alu 181 312 0 1472 124 8 64 chrX 41914916 41914967 -120684963 + L1M3 LINE L1 5653 5705 -466 1705 181 0 7 chrX 41914971 41915264 -120684666 - AluJb SINE Alu -21 291 1 1403 121 8 54 chrX 41915595 41915677 -120684253 + L1M3 LINE L1 5486 5570 -601 1978 135 0 3 chrX 41915677 41915973 -120683957 + AluSx SINE Alu 6 300 -12 1403 121 8 54 chrX 41915973 41916130 -120683800 + L1M3 LINE L1 5570 5714 -457 720 226 0 0 chrX 41916135 41916259 -120683671 - FRAM SINE Alu -52 124 1 239 186 0 68 chrX 41916264 41916323 -120683607 - L1MA9 LINE L1 -370 5942 5888 * 611 131 83 12 chrX 41916315 41916436 -120683494 + L1MCa LINE L1 1627 2192 -4235 239 237 111 56 chrX 41917288 41917486 -120682444 - L1ME LINE L1 -227 5894 5686 243 185 19 19 chrX 41917531 41917585 -120682345 + GA-rich Low_complexity Low_complexity 3 56 0 2135 100 7 3 chrX 41918947 41919256 -120680674 - AluSx SINE Alu -2 310 1 1142 189 48 2 chrX 41919291 41919578 -120680352 + MER2 DNA MER2_type 1 341 -4 2281 94 3 0 chrX 41919804 41920113 -120679817 + AluSx SINE Alu 1 310 -2 427 114 38 0 chrX 41920526 41920605 -120679325 + CT-rich Low_complexity Low_complexity 2 83 0 1327 163 61 49 chrX 41920616 41920801 -120679129 - AluJo SINE Alu -45 267 77 1775 140 7 40 chrX 41920801 41921101 -120678829 - AluJo SINE Alu -22 290 1 1327 163 61 49 chrX 41921101 41921179 -120678751 - AluJo SINE Alu -235 77 1 224 330 0 11 chrX 41921589 41921680 -120678250 - L2 LINE L2 -665 2649 2560 230 330 11 23 chrX 41921699 41921787 -120678143 + MIR SINE MIR 168 254 -8 1703 145 42 7 chrX 41922647 41922813 -120677117 - AluJb SINE Alu -13 299 117 197 33 33 0 chrX 41922813 41922843 -120677087 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1703 145 42 7 chrX 41922843 41922965 -120676965 - AluJb SINE Alu -195 117 1 1525 157 10 51 chrX 41922999 41923293 -120676637 + AluJo SINE Alu 1 282 -30 245 345 86 41 chrX 41923359 41923670 -120676260 - L2 LINE L2 -341 2973 2644 2642 130 21 58 chrX 41923670 41923967 -120675963 - MLT1C LTR MaLR 0 467 193 2232 114 13 0 chrX 41923967 41924275 -120675655 + AluSx SINE Alu 1 312 0 2642 130 21 58 chrX 41924275 41924462 -120675468 - MLT1C LTR MaLR -274 193 1 245 345 86 41 chrX 41924462 41924489 -120675441 - L2 LINE L2 -670 2644 2620 2352 97 3 0 chrX 41924533 41924831 -120675099 + AluSx SINE Alu 1 299 -13 183 286 193 52 chrX 41924851 41925043 -120674887 - L2 LINE L2 -782 2532 2314 2053 128 0 3 chrX 41925133 41925437 -120674493 + AluJb SINE Alu 3 305 0 2453 98 0 0 chrX 41925562 41925868 -120674062 + AluSq SINE Alu 1 306 -7 2144 122 3 10 chrX 41925868 41926162 -120673768 + AluSg SINE Alu 1 292 -18 437 280 0 9 chrX 41926182 41926289 -120673641 + L2 LINE L2 3187 3292 -21 1978 148 7 3 chrX 41926304 41926594 -120673336 - AluJb SINE Alu -21 291 1 236 173 0 39 chrX 41926829 41926881 -120673049 + Alu SINE Alu 87 136 -166 1507 147 12 114 chrX 41926881 41927214 -120672716 + AluJo SINE Alu 2 300 -2 1727 217 24 49 chrX 41927341 41927720 -120672210 + L1ME1 LINE L1 5682 6048 -118 2584 80 3 0 chrX 41927720 41928031 -120671899 - AluSq SINE Alu -1 312 1 1727 217 24 49 chrX 41928031 41928145 -120671785 + L1ME1 LINE L1 6048 6163 -3 554 320 23 23 chrX 41928317 41928620 -120671310 + L1MD1 LINE L1 4068 4370 -1776 1978 146 10 3 chrX 41928620 41928915 -120671015 + AluJo SINE Alu 1 297 -15 764 146 15 0 chrX 41928915 41929045 -120670885 + L1MC1 LINE L1 5966 6097 -236 698 133 0 0 chrX 41929051 41929164 -120670766 + L1MD1 LINE L1 4748 4860 -1286 1250 174 9 26 chrX 41929167 41929397 -120670533 - AluJo SINE Alu 0 312 87 1281 167 0 0 chrX 41929401 41929599 -120670331 - AluJb SINE Alu -33 279 82 4586 172 67 60 chrX 41929599 41930142 -120669788 + L1MD1 LINE L1 4847 5385 -857 2245 122 0 22 chrX 41930142 41930461 -120669469 + AluSx SINE Alu 1 312 0 4586 172 67 60 chrX 41930461 41930886 -120669044 + L1MD1 LINE L1 5385 5805 -437 2220 121 0 13 chrX 41930886 41931192 -120668738 + AluJb SINE Alu 1 302 -10 4586 172 67 60 chrX 41931192 41931597 -120668333 + L1MD1 LINE L1 5805 6242 0 446 280 238 14 chrX 41931703 41931917 -120668013 + MIR SINE MIR 1 262 0 371 168 17 0 chrX 41932150 41932295 -120667635 + L1MC4a LINE L1 6939 7222 -586 398 71 107 0 chrX 41932299 41932383 -120667547 - Charlie5 DNA MER1_type -118 2494 2402 1059 99 0 0 chrX 41932384 41932515 -120667415 + AluSq/x SINE Alu 1 131 -182 2142 82 0 0 chrX 41932523 41932780 -120667150 + AluSc SINE Alu 1 257 -52 2006 142 127 21 chrX 41932851 41933238 -120666692 + MSTA LTR MaLR 1 428 0 909 166 14 0 chrX 41933240 41933385 -120666545 - AluSg/x SINE Alu -32 278 132 28 0 0 0 chrX 41933602 41933630 -120666300 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 41933670 41933692 -120666238 + AT_rich Low_complexity Low_complexity 1 22 0 1961 133 0 24 chrX 41933692 41933985 -120665945 - AluSx SINE Alu -26 286 1 317 285 97 48 chrX 41934095 41934281 -120665649 - L1ME4a LINE L1 -176 5945 5751 21 0 0 0 chrX 41934454 41934475 -120665455 + AT_rich Low_complexity Low_complexity 1 21 0 1556 124 3 133 chrX 41934477 41934846 -120665084 + AluJo SINE Alu 1 302 0 919 150 13 13 chrX 41934949 41935102 -120664828 - AluSg/x SINE Alu -16 294 142 363 117 2 2 chrX 41935102 41935166 -120664764 - Alu SINE Alu -244 55 1 2032 107 76 0 chrX 41935936 41936225 -120663705 + AluSq SINE Alu 1 311 -2 2295 99 0 0 chrX 41937072 41937384 -120662546 + AluSx SINE Alu 2 313 0 2184 100 4 0 chrX 41937384 41937691 -120662239 + AluSg SINE Alu 1 308 0 436 160 75 0 chrX 41937695 41937789 -120662141 - L1MC4 LINE L1 -3 8039 7939 1760 160 17 3 chrX 41937797 41938084 -120661846 - AluJo SINE Alu -21 291 1 779 144 25 6 chrX 41938159 41938319 -120661611 + L1MC2 LINE L1 5814 5976 -368 945 142 8 0 chrX 41938319 41938453 -120661477 + AluJo SINE Alu 1 135 -177 235 258 75 0 chrX 41938488 41938581 -120661349 + Zaphod DNA AcHobo 3931 4030 -1 2180 80 0 73 chrX 41938598 41938912 -120661018 + AluSg SINE Alu 1 291 -19 466 312 51 45 chrX 41938933 41939143 -120660787 + L1MC/D LINE L1 4695 4909 -1237 1982 165 0 0 chrX 41939143 41939440 -120660490 + AluJo SINE Alu 1 297 -15 466 312 51 45 chrX 41939440 41939562 -120660368 + L1MC/D LINE L1 4909 5029 -1117 1961 181 0 0 chrX 41939562 41939872 -120660058 + AluJb SINE Alu 1 310 -2 248 313 0 0 chrX 41939971 41940067 -120659863 + L1MC/D LINE L1 5348 5443 -799 2344 89 0 0 chrX 41940077 41940368 -120659562 + AluSc SINE Alu 1 291 -18 2440 83 7 0 chrX 41940750 41941051 -120658879 - AluSx SINE Alu -9 303 1 1236 289 54 5 chrX 41941170 41941578 -120658352 + LTR16A LTR ERVL 16 443 -7 2262 84 0 0 chrX 41941578 41941852 -120658078 + AluSx SINE Alu 29 302 -10 1886 150 0 20 chrX 41941974 41942267 -120657663 + AluJo SINE Alu 1 287 -25 21 36 0 0 chrX 41942291 41942319 -120657611 + AT_rich Low_complexity Low_complexity 1 28 0 2426 99 0 0 chrX 41942564 41942867 -120657063 + AluSx SINE Alu 1 303 -9 2504 74 3 0 chrX 41943315 41943611 -120656319 + AluSq SINE Alu 1 297 -16 1849 143 4 0 chrX 41943851 41944147 -120655783 - AluJo SINE Alu 0 307 11 1307 221 86 35 chrX 41944182 41944553 -120655377 - MLT1B LTR MaLR 0 390 1 2502 84 0 0 chrX 41944761 41945069 -120654861 + AluSg SINE Alu 2 309 -1 1950 88 113 7 chrX 41945329 41945603 -120654327 + AluSg1 SINE Alu 1 303 -6 1882 161 0 19 chrX 41945617 41945927 -120654003 + AluJo SINE Alu 1 304 -8 1123 241 0 37 chrX 41946017 41946287 -120653643 + L1MEc LINE L1 37 296 -6100 395 248 64 0 chrX 41946258 41946383 -120653547 + L1MD2 LINE L1 6238 6370 -58 * 852 134 55 0 chrX 41946417 41946544 -120653386 - AluJb SINE Alu -32 280 147 756 221 94 76 chrX 41946546 41946718 -120653212 + L1MEc LINE L1 2354 2521 -3694 2533 90 0 0 chrX 41946718 41947029 -120652901 + AluSx SINE Alu 1 311 -1 756 221 94 76 chrX 41947029 41947186 -120652744 + L1MEc LINE L1 2521 2689 -3526 1129 188 19 0 chrX 41947187 41947395 -120652535 - MLT1B LTR MaLR 0 390 179 1566 181 30 33 chrX 41947405 41947709 -120652221 - AluJo SINE Alu -5 307 5 1100 139 36 0 chrX 41947725 41947891 -120652039 - AluSp SINE Alu -5 308 137 877 139 61 12 chrX 41947893 41948058 -120651872 - MLT1B LTR MaLR -217 173 1 209 383 28 0 chrX 41948305 41948412 -120651518 - MIR SINE MIR -3 259 150 208 247 62 62 chrX 41948467 41948548 -120651382 - MIR SINE MIR -124 138 58 24 53 0 0 chrX 41948801 41948839 -120651091 + AT_rich Low_complexity Low_complexity 1 38 0 2140 61 8 8 chrX 41949366 41949627 -120650303 - AluY SINE Alu -15 296 36 2161 97 13 7 chrX 41949710 41950020 -120649910 + AluSx SINE Alu 1 312 0 927 147 98 0 chrX 41951136 41951299 -120648631 + AluJb SINE Alu 118 296 -16 1270 213 134 50 chrX 41951864 41951927 -120648003 - L1ME2 LINE L1 -3 6163 6107 2092 149 3 3 chrX 41951927 41952236 -120647694 + AluJb SINE Alu 1 309 -3 1270 213 134 50 chrX 41952236 41952633 -120647297 - L1ME2 LINE L1 -59 6107 5664 370 208 32 8 chrX 41952654 41952806 -120647124 - MER63A DNA MER1_type -26 184 1 1178 159 5 19 chrX 41952806 41953020 -120646910 - L1ME2 LINE L1 -496 5670 5460 665 149 158 0 chrX 41953023 41953137 -120646793 + FLAM_C SINE Alu 2 133 0 2464 100 0 0 chrX 41953186 41953517 -120646413 + AluSx SINE Alu 1 331 0 3156 138 86 27 chrX 41953736 41953813 -120646117 - MER67C LTR ERV1 0 710 639 2156 104 6 47 chrX 41953813 41954131 -120645799 - AluSx SINE Alu -6 306 2 3156 138 86 27 chrX 41954131 41954719 -120645211 - MER67C LTR ERV1 -71 639 6 190 280 40 0 chrX 41955914 41955964 -120643966 - L2 LINE L2 -3250 64 13 2195 89 0 4 chrX 41956409 41956689 -120643241 + AluSq SINE Alu 35 313 0 273 267 75 17 chrX 41956864 41956984 -120642946 - L2 LINE L2 -531 2783 2657 4513 142 38 0 chrX 41957620 41958323 -120641607 - MER44D DNA MER2_type -3 602 1 468 254 71 0 chrX 41958736 41958862 -120641068 + MIR SINE MIR 68 202 -60 204 209 0 23 chrX 41959604 41959647 -120640283 - L2 LINE L2 0 3313 3272 814 221 0 6 chrX 41959663 41959826 -120640104 + MIR SINE MIR 84 245 -17 446 231 23 0 chrX 41959837 41959967 -120639963 + MER20B DNA MER1_type 503 635 -148 309 216 24 32 chrX 41959968 41960093 -120639837 + (TTATA)n Simple_repeat Simple_repeat 5 128 0 308 172 141 0 chrX 41960126 41960225 -120639705 + MER20B DNA MER1_type 634 746 -37 27 0 0 0 chrX 41960354 41960381 -120639549 + AT_rich Low_complexity Low_complexity 1 27 0 851 246 182 14 chrX 41960390 41960687 -120639243 + L2 LINE L2 2967 3313 0 483 275 74 0 chrX 41962273 41962422 -120637508 - MIR SINE MIR -95 167 8 288 0 0 0 chrX 41965284 41965316 -120634614 + (TG)n Simple_repeat Simple_repeat 2 33 0 324 0 0 0 chrX 41965386 41965422 -120634508 + (TG)n Simple_repeat Simple_repeat 2 37 0 214 259 0 17 chrX 41967176 41967234 -120632696 + GA-rich Low_complexity Low_complexity 2 58 0 1686 184 72 6 chrX 41969634 41969954 -120629976 + MER58B DNA MER1_type 1 341 0 448 193 0 0 chrX 41971023 41971111 -120628819 + L1MB8 LINE L1 6091 6178 0 555 78 39 0 chrX 41971438 41971515 -120628415 - MADE1 DNA Mariner 0 80 1 290 264 79 50 chrX 41973486 41973626 -120626304 + MIR SINE MIR 9 152 -110 586 302 0 34 chrX 41974077 41974256 -120625674 + MIR SINE MIR 90 262 0 183 163 0 47 chrX 41974316 41974359 -120625571 + MIR SINE MIR 182 222 -40 1001 103 0 22 chrX 41974360 41974496 -120625434 - FLAM_C SINE Alu 0 133 1 2363 91 0 0 chrX 41974522 41974818 -120625112 + AluSq SINE Alu 1 296 -17 2192 93 17 7 chrX 41974827 41975118 -120624812 + AluSx SINE Alu 1 294 -18 1064 106 0 0 chrX 41975118 41975260 -120624670 - L1PB4 LINE L1 -14 6142 6001 186 264 0 57 chrX 41975260 41975313 -120624617 + MIR SINE MIR 213 262 0 192 305 84 21 chrX 41975348 41975443 -120624487 + MIR SINE MIR 150 250 -12 698 273 110 10 chrX 41975748 41975957 -120623973 + MIR SINE MIR 30 259 -3 497 267 9 0 chrX 41975969 41976085 -120623845 + MIR SINE MIR 18 134 -128 225 171 0 0 chrX 41976197 41976232 -120623698 + MIR SINE MIR 219 253 -9 206 233 0 55 chrX 41976382 41976455 -120623475 + G-rich Low_complexity Low_complexity 2 70 0 719 281 101 0 chrX 41977802 41978019 -120621911 + L2 LINE L2 2848 3086 -227 2241 80 3 242 chrX 41978037 41978674 -120621256 - MER31A LTR ERV1 0 485 1 804 237 34 19 chrX 41978678 41978885 -120621045 + L2 LINE L2 3103 3312 -1 206 225 28 56 chrX 41978870 41978941 -120620989 + MIR SINE MIR 178 246 -16 * 207 0 0 0 chrX 41979029 41979052 -120620878 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1932 128 21 3 chrX 41983203 41983485 -120616445 + AluSg SINE Alu 11 297 -13 2357 69 20 30 chrX 41983485 41983790 -120616140 + AluY SINE Alu 1 302 -9 904 306 22 0 chrX 41983790 41984022 -120615908 + MIR SINE MIR 24 260 -2 1897 146 29 0 chrX 41985059 41985358 -120614572 - AluJb SINE Alu 0 307 1 2415 84 0 0 chrX 41985612 41985908 -120614022 + AluSx SINE Alu 1 296 -16 360 369 12 36 chrX 41986061 41986229 -120613701 - L1M4 LINE L1 -1235 4911 4748 1544 196 29 21 chrX 41986231 41986550 -120613380 + AluJo SINE Alu 1 321 0 545 297 40 22 chrX 41986598 41987042 -120612888 - L1M4 LINE L1 -1419 4727 4284 2040 131 35 0 chrX 41987044 41987215 -120612715 - AluJo SINE Alu -8 304 117 188 33 0 33 chrX 41987215 41987245 -120612685 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2040 131 35 0 chrX 41987245 41987363 -120612567 - AluJo SINE Alu -195 117 5 410 303 92 24 chrX 41987367 41987446 -120612484 - L1M4 LINE L1 -2370 3776 3704 2243 118 3 0 chrX 41987446 41987742 -120612188 - AluSx SINE Alu -15 297 1 410 303 92 24 chrX 41987742 41988042 -120611888 - L1M4 LINE L1 -2442 3704 3371 289 167 77 0 chrX 41988036 41988114 -120611816 + L1MC4a LINE L1 6095 6178 -1630 * 1952 151 0 17 chrX 41988124 41988423 -120611507 + AluJb SINE Alu 3 296 -16 2240 121 6 10 chrX 41988423 41988736 -120611194 + AluSx SINE Alu 1 312 0 2509 171 35 119 chrX 41988736 41988889 -120611041 + MER21B LTR ERV1 213 377 -486 2462 87 3 0 chrX 41988889 41989200 -120610730 - AluSp SINE Alu -1 312 1 2509 171 35 119 chrX 41989200 41989735 -120610195 + MER21B LTR ERV1 377 789 -74 547 207 8 23 chrX 41989781 41989945 -120609985 + L1MC4a LINE L1 6597 6716 -1092 6516 218 47 30 chrX 41990034 41991225 -120608705 + L1M4 LINE L1 54 1223 -5421 2406 98 0 3 chrX 41991225 41991530 -120608400 + AluSq SINE Alu 1 304 -9 6516 218 47 30 chrX 41991530 41992588 -120607342 + L1M4 LINE L1 1223 2261 -4383 1804 167 13 20 chrX 41992588 41992719 -120607211 + AluJb SINE Alu 1 131 -181 2148 110 0 3 chrX 41992719 41993043 -120606887 + AluSg SINE Alu 1 323 0 1804 167 13 20 chrX 41993043 41993209 -120606721 + AluJb SINE Alu 131 297 -15 6516 218 47 30 chrX 41993209 41993428 -120606502 + L1M4 LINE L1 2261 2475 -4169 3436 117 0 36 chrX 41993428 41993960 -120605970 - MER75 DNA T2_type 0 514 2 6516 218 47 30 chrX 41993960 41994376 -120605554 + L1M4 LINE L1 2475 2882 -3762 1621 162 40 37 chrX 41994376 41994672 -120605258 - AluJb SINE Alu -15 297 1 6516 218 47 30 chrX 41994672 41995648 -120604282 + L1M4 LINE L1 2882 4047 -2597 930 144 0 0 chrX 41995648 41995780 -120604150 + FLAM_C SINE Alu 1 132 -1 6516 218 47 30 chrX 41995780 41996234 -120603696 + L1M4 LINE L1 4047 4492 -2152 1061 245 0 16 chrX 41996241 41996486 -120603444 - MIR SINE MIR -21 241 1 2205 78 57 0 chrX 41996551 41996832 -120603098 + AluSc SINE Alu 1 297 -12 24 77 0 0 chrX 41997149 41997201 -120602729 + AT_rich Low_complexity Low_complexity 1 52 0 1720 163 0 0 chrX 41997360 41997624 -120602306 - AluJo SINE Alu -2 310 47 26 0 0 0 chrX 41997625 41997651 -120602279 + AT_rich Low_complexity Low_complexity 1 26 0 26 82 0 0 chrX 41998019 41998080 -120601850 + AT_rich Low_complexity Low_complexity 1 61 0 2446 86 0 3 chrX 41998080 41998382 -120601548 - AluSp SINE Alu -12 301 1 2066 113 0 0 chrX 41998458 41998724 -120601206 - AluSg SINE Alu -44 266 1 908 237 91 59 chrX 41999877 42000067 -120599863 + L2 LINE L2 2926 3108 -205 2116 120 30 0 chrX 42000067 42000366 -120599564 - AluSq SINE Alu -5 308 1 908 237 91 59 chrX 42000366 42000550 -120599380 + L2 LINE L2 3108 3312 -1 218 320 0 0 chrX 42000560 42000610 -120599320 + L2 LINE L2 3221 3270 -2 1867 163 0 17 chrX 42000615 42000904 -120599026 + AluJb SINE Alu 1 284 -28 198 0 0 0 chrX 42000904 42000926 -120599004 + (TA)n Simple_repeat Simple_repeat 2 23 0 1686 149 6 68 chrX 42001769 42001923 -120598007 + AluJo SINE Alu 1 126 -186 2113 122 7 10 chrX 42001923 42002226 -120597704 + AluSq SINE Alu 1 302 -11 1686 149 6 68 chrX 42002226 42002393 -120597537 + AluJo SINE Alu 126 302 -10 823 35 35 0 chrX 42002394 42002507 -120597423 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 327 25 0 0 chrX 42003056 42003096 -120596834 + (CA)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chrX 42003179 42003213 -120596717 + (CA)n Simple_repeat Simple_repeat 2 35 0 1009 292 58 3 chrX 42003415 42003761 -120596169 + LTR16A LTR ERVL 86 450 0 395 289 10 0 chrX 42003796 42003900 -120596030 + HERV16 LTR ERVL 42 146 -4850 662 219 43 12 chrX 42003903 42004067 -120595863 + HERVL LTR ERVL 3087 3255 -2399 2128 301 90 24 chrX 42004240 42005152 -120594778 + HERVL LTR ERVL 346 1317 -3679 * 6384 322 62 32 chrX 42005150 42007024 -120592906 + HERVL LTR ERVL 2070 4078 -1686 2527 75 7 0 chrX 42007024 42007330 -120592600 + AluSx SINE Alu 1 308 -4 6384 322 62 32 chrX 42007330 42008641 -120591289 + HERVL LTR ERVL 4078 5349 -415 1303 242 38 21 chrX 42008856 42009228 -120590702 + LTR16A LTR ERVL 59 436 -14 432 192 39 0 chrX 42009429 42009533 -120590397 + MER112 DNA MER1_type 65 172 -88 2286 86 45 0 chrX 42009798 42010088 -120589842 + AluSg SINE Alu 1 303 -7 224 371 11 6 chrX 42014742 42014920 -120585010 + (CA)n Simple_repeat Simple_repeat 2 180 0 394 258 106 13 chrX 42015321 42015472 -120584458 - MIR SINE MIR -12 250 86 207 217 22 0 chrX 42015695 42015741 -120584189 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 414 263 117 0 chrX 42015761 42015898 -120584032 + MIR SINE MIR 19 171 -91 570 208 87 13 chrX 42017211 42017360 -120582570 + MIR SINE MIR 101 260 -2 203 227 23 0 chrX 42017668 42017712 -120582218 + L2 LINE L2 3228 3272 0 181 205 103 0 chrX 42018668 42018707 -120581223 - L2 LINE L2 -4 3309 3267 1234 117 0 17 chrX 42018716 42018895 -120581035 - FRAM SINE Alu 0 176 1 956 189 24 61 chrX 42018896 42019108 -120580822 + MIR SINE MIR 59 262 0 436 239 203 20 chrX 42021913 42022164 -120577766 + L2 LINE L2 2565 2861 -453 1309 145 18 27 chrX 42023347 42023568 -120576362 + MER20 DNA MER1_type 1 219 0 190 267 53 67 chrX 42024205 42024280 -120575650 + L2 LINE L2 3220 3293 -20 463 234 0 88 chrX 42024331 42024468 -120575462 + MIR SINE MIR 69 193 -69 406 232 18 101 chrX 42024760 42024871 -120575059 + MIR SINE MIR 89 183 -79 2282 107 0 0 chrX 42024871 42025169 -120574761 - AluSx SINE Alu -14 298 1 406 232 18 101 chrX 42025169 42025225 -120574705 + MIR SINE MIR 183 242 -20 238 156 89 0 chrX 42025194 42025239 -120574691 + L2 LINE L2 3216 3264 -8 * 386 255 102 10 chrX 42025237 42025335 -120574595 - L2 LINE L2 -4 3309 3203 1772 161 13 17 chrX 42025429 42025728 -120574202 - AluJo SINE Alu -9 303 6 201 94 0 0 chrX 42025733 42025765 -120574165 + (T)n Simple_repeat Simple_repeat 1 32 0 2517 93 0 0 chrX 42026138 42026449 -120573481 + AluSx SINE Alu 1 311 -1 536 244 58 17 chrX 42026662 42026834 -120573096 + L2 LINE L2 3135 3313 0 * 580 273 42 74 chrX 42026801 42027112 -120572818 - L2 LINE L2 -983 2331 2031 1521 183 20 23 chrX 42027233 42027539 -120572391 - AluJb SINE Alu -5 307 3 268 169 0 34 chrX 42027543 42027602 -120572328 - FLAM SINE Alu 0 133 78 1225 178 0 5 chrX 42027602 42027821 -120572109 - AluJo SINE Alu -94 218 1 886 203 5 21 chrX 42032625 42032817 -120567113 + MER5A DNA MER1_type 1 189 0 316 266 32 0 chrX 42035823 42035917 -120564013 + MLT1E2-int LTR MaLR 1275 1371 0 2515 187 77 35 chrX 42035917 42036515 -120563415 + MLT1E2 LTR MaLR 1 623 -3 2104 106 0 38 chrX 42036759 42037079 -120562851 - AluSx SINE Alu -4 308 1 273 216 0 0 chrX 42037106 42037157 -120562773 - MIR SINE MIR -3 259 209 756 213 0 44 chrX 42037164 42037263 -120562667 + MIR SINE MIR 2 93 -169 890 152 0 0 chrX 42037263 42037395 -120562535 - FLAM_C SINE Alu 0 133 2 756 213 0 44 chrX 42037395 42037455 -120562475 + MIR SINE MIR 93 154 -108 269 220 51 0 chrX 42037457 42037516 -120562414 + MIR SINE MIR 128 189 -73 1255 220 91 7 chrX 42037565 42037874 -120562056 + MER46C DNA MER2_type 4 338 0 506 306 65 11 chrX 42037898 42038084 -120561846 - MIR SINE MIR -63 199 4 993 286 150 10 chrX 42038516 42039390 -120560540 - L2 LINE L2 -2 3311 2313 764 206 38 12 chrX 42039477 42039637 -120560293 - MIR SINE MIR -66 196 33 483 275 83 10 chrX 42039665 42039858 -120560072 - L2 LINE L2 -184 3129 2923 457 169 28 164 chrX 42040086 42040263 -120559667 + MIR SINE MIR 60 212 -50 601 85 0 43 chrX 42040494 42040588 -120559342 - FLAM_A SINE Alu -11 131 42 1202 244 92 55 chrX 42040978 42041334 -120558596 + L2 LINE L2 2804 3184 -129 2096 110 3 3 chrX 42041334 42041635 -120558295 - AluSx SINE Alu -11 301 1 1202 244 92 55 chrX 42041635 42041765 -120558165 + L2 LINE L2 3184 3308 -5 676 274 105 20 chrX 42041846 42042094 -120557836 - L2 LINE L2 0 3313 3045 857 131 0 29 chrX 42042303 42042440 -120557490 - FLAM_A SINE Alu 0 133 1 618 268 78 10 chrX 42042695 42042900 -120557030 - L2 LINE L2 -272 3041 2823 369 214 69 76 chrX 42042902 42043033 -120556897 - MIR SINE MIR -54 208 79 221 287 104 43 chrX 42043077 42043192 -120556738 - L2 LINE L2 -341 2972 2851 511 277 189 6 chrX 42043218 42043377 -120556553 + MIR SINE MIR 75 262 0 190 75 75 0 chrX 42044275 42044315 -120555615 + G-rich Low_complexity Low_complexity 6 48 0 192 179 0 0 chrX 42044692 42044731 -120555199 + (CGG)n Simple_repeat Simple_repeat 2 40 0 1550 245 41 13 chrX 42046460 42047030 -120552900 - L2 LINE L2 -1 3312 2722 262 259 118 12 chrX 42047032 42047117 -120552813 + MLT1K LTR MaLR 495 588 0 269 346 101 0 chrX 42047208 42047367 -120552563 - L2 LINE L2 -375 2939 2765 1101 211 87 0 chrX 42047473 42047738 -120552192 + L2 LINE L2 2213 2500 -814 882 172 59 11 chrX 42047802 42047988 -120551942 + L2 LINE L2 3119 3313 0 282 246 169 41 chrX 42047993 42048224 -120551706 + L1MC4a LINE L1 6714 6936 -872 2289 74 0 3 chrX 42048382 42048679 -120551251 - AluSg SINE Alu -14 296 1 2123 103 3 0 chrX 42049172 42049463 -120550467 + AluSq SINE Alu 1 292 -21 399 289 188 10 chrX 42049790 42049998 -120549932 + L2 LINE L2 2855 3099 -214 1539 99 45 9 chrX 42050017 42050239 -120549691 - MER30 DNA MER1_type 0 230 1 1099 296 72 22 chrX 42050343 42050358 -120549572 - L2 LINE L2 -9 3304 3291 1044 179 12 0 chrX 42050358 42050526 -120549404 + FAM SINE Alu 1 170 -5 1099 296 72 22 chrX 42050526 42050969 -120548961 - L2 LINE L2 -22 3291 2823 553 192 83 17 chrX 42051047 42051167 -120548763 + L2 LINE L2 3184 3311 -2 406 234 75 154 chrX 42051497 42051698 -120548232 + L2 LINE L2 3128 3312 -1 873 219 67 22 chrX 42052168 42052392 -120547538 + MIR SINE MIR 29 262 0 491 312 30 34 chrX 42052543 42052780 -120547150 - MIR SINE MIR -11 251 16 1743 168 13 10 chrX 42054280 42054645 -120545285 - AluJb SINE Alu 0 366 1 246 198 174 12 chrX 42054951 42055037 -120544893 - L1MC4 LINE L1 -2 8040 7941 1633 160 32 0 chrX 42055048 42055329 -120544601 - AluJb SINE Alu -22 290 1 513 256 31 26 chrX 42055384 42055579 -120544351 - L1ME LINE L1 -298 6634 6439 1856 147 0 10 chrX 42055585 42055878 -120544052 - AluSx SINE Alu -22 290 1 1530 185 61 27 chrX 42055974 42056304 -120543626 + MER58B DNA MER1_type 1 341 0 1316 215 34 44 chrX 42056610 42057038 -120542892 - L1ME LINE L1 -743 6214 5809 1922 161 36 34 chrX 42057040 42057162 -120542768 - L1MB7 LINE L1 0 6184 6064 1848 142 3 19 chrX 42057162 42057472 -120542458 - AluJb SINE Alu -6 306 2 1922 161 36 34 chrX 42057472 42057766 -120542164 - L1MB7 LINE L1 -120 6064 5767 4091 172 49 31 chrX 42057769 42058320 -120541610 - L1ME LINE L1 -4246 2711 2172 2014 118 20 3 chrX 42058320 42058617 -120541313 + AluSx SINE Alu 1 302 -10 4091 172 49 31 chrX 42058617 42059006 -120540924 - L1ME LINE L1 -4785 2172 1750 2088 162 93 90 chrX 42059006 42059517 -120540413 + LTR64 LTR ERVK 1 516 -42 1755 148 17 14 chrX 42059517 42059814 -120540116 + AluJb SINE Alu 1 298 -14 2088 162 93 90 chrX 42059814 42059858 -120540072 + LTR64 LTR ERVK 516 558 0 4091 172 49 31 chrX 42059858 42059888 -120540042 - L1ME LINE L1 -5207 1750 1722 660 167 33 17 chrX 42059892 42060012 -120539918 - MSTC LTR MaLR -306 122 1 251 232 14 29 chrX 42060074 42060143 -120539787 - L1ME LINE L1 -5685 1174 1107 2046 124 0 3 chrX 42060245 42060551 -120539379 - AluSx SINE Alu -7 305 1 291 104 0 0 chrX 42060562 42060610 -120539320 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 692 78 0 0 chrX 42060619 42060709 -120539221 - AluSg/x SINE Alu -44 266 177 318 243 65 65 chrX 42060825 42060932 -120538998 - L1ME LINE L1 -6594 265 159 4604 84 17 3 chrX 42060988 42061631 -120538299 - L1MA3 LINE L1 -1 6304 5653 1071 181 0 0 chrX 42061642 42061824 -120538106 - AluJb SINE Alu -6 306 125 638 28 44 60 chrX 42061824 42062006 -120537924 + (TA)n Simple_repeat Simple_repeat 2 180 0 231 65 32 0 chrX 42062007 42062038 -120537892 - AluJb SINE Alu -184 118 87 2326 111 24 0 chrX 42062038 42062417 -120537513 - L1 LINE L1 -1516 6049 5662 945 206 0 5 chrX 42062602 42062791 -120537139 + L1MB7 LINE L1 5920 6107 -77 973 92 0 21 chrX 42062808 42062949 -120536981 + AluJb SINE Alu 1 138 -174 313 115 98 0 chrX 42062951 42063012 -120536918 + AluS SINE Alu 233 299 -3 227 97 0 0 chrX 42063019 42063050 -120536880 + L1MB7 LINE L1 6109 6139 -45 8021 13 2 0 chrX 42063385 42064571 -120535359 - L1PA3 LINE L1 0 6155 4970 2527 128 3 5 chrX 42064571 42064945 -120534985 - L1 LINE L1 -1892 5673 5299 1588 95 5 3 chrX 42064947 42065307 -120534623 - L1 LINE L1 -4265 3300 2803 * 13973 124 12 0 chrX 42065304 42067247 -120532683 - L1 LINE L1 -5119 2446 480 4730 73 2 3 chrX 42067259 42067858 -120532072 - L1PA8A LINE L1 -6 6125 5528 3984 76 9 0 chrX 42067858 42068547 -120531383 + L1PA8A LINE L1 4829 5524 -607 3040 162 19 2 chrX 42068541 42069010 -120530920 - L1 LINE L1 -7073 492 16 * 424 266 41 6 chrX 42068996 42069165 -120530765 - L1M4 LINE L1 -6355 187 13 * 2172 95 0 0 chrX 42069264 42069578 -120530352 - AluSx SINE Alu 0 314 1 238 155 0 42 chrX 42069578 42069649 -120530281 - L1M LINE L1 -850 5330 5263 266 297 47 0 chrX 42069676 42069740 -120530190 - MIR SINE MIR -194 68 2 2380 102 13 58 chrX 42070077 42070089 -120529841 + THE1C LTR MaLR 1 12 -363 4206 99 27 2 chrX 42070089 42070653 -120529277 + LTR19B LTR ERV1 1 578 -2 2380 102 13 58 chrX 42070653 42071033 -120528897 + THE1C LTR MaLR 12 375 0 1008 180 0 0 chrX 42071323 42071501 -120528429 - AluJb SINE Alu -6 306 129 1551 185 10 27 chrX 42071597 42071889 -120528041 - AluJo SINE Alu -25 287 1 311 319 42 8 chrX 42072532 42072651 -120527279 - L1M4 LINE L1 -3642 2504 2382 841 236 91 0 chrX 42072724 42072932 -120526998 - MIR SINE MIR -30 232 6 * 3316 277 71 41 chrX 42072930 42073699 -120526231 - L2 LINE L2 -19 3294 2550 1755 160 0 0 chrX 42073699 42073981 -120525949 + AluJb SINE Alu 1 282 -30 3316 277 71 41 chrX 42073981 42074662 -120525268 - L2 LINE L2 -763 2550 1782 371 267 57 9 chrX 42074667 42074759 -120525171 - L1M4 LINE L1 -3783 2363 2264 1920 140 3 3 chrX 42074759 42075067 -120524863 - AluSx SINE Alu -4 308 1 371 267 57 9 chrX 42075067 42075079 -120524851 - L1M4 LINE L1 -3882 2264 2254 378 36 0 0 chrX 42075087 42075143 -120524787 - L1MB4 LINE L1 0 6180 6125 378 270 64 13 chrX 42075324 42075801 -120524129 + L1MEc LINE L1 2074 2573 -3642 381 306 44 38 chrX 42075951 42076134 -120523796 + MIR SINE MIR 20 203 -59 951 41 41 29 chrX 42076530 42076585 -120523345 + (TTTC)n Simple_repeat Simple_repeat 1 229 0 951 41 41 29 chrX 42076585 42076757 -120523173 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 302 158 0 18 chrX 42076966 42077023 -120522907 - FLAM SINE Alu 0 133 78 5228 152 26 8 chrX 42077138 42078016 -120521914 + MER54A LTR ERVL 8 901 0 1085 219 33 103 chrX 42078332 42078788 -120521142 + L1ME2 LINE L1 5709 6132 -32 2661 65 59 19 chrX 42078821 42079026 -120520904 + L1PA10 LINE L1 5781 6009 -159 270 0 0 0 chrX 42079026 42079056 -120520874 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 2661 65 59 19 chrX 42079056 42079222 -120520708 + L1PA10 LINE L1 6009 6167 -1 594 216 0 0 chrX 42079229 42079340 -120520590 + MER5A DNA MER1_type 75 185 -4 1054 230 90 70 chrX 42079984 42080220 -120519710 - L1ME2 LINE L1 -9 6155 5925 380 71 18 0 chrX 42080220 42080276 -120519654 + (CA)n Simple_repeat Simple_repeat 2 58 0 1054 230 90 70 chrX 42080276 42080321 -120519609 - L1ME2 LINE L1 -239 5925 5882 1916 133 7 18 chrX 42080321 42080606 -120519324 - AluJo SINE Alu -30 282 1 1054 230 90 70 chrX 42080606 42080780 -120519150 - L1ME2 LINE L1 -282 5882 5690 500 134 25 8 chrX 42081942 42082032 -120517898 - L1MD3 LINE L1 -156 7839 7542 2944 179 63 28 chrX 42082037 42082505 -120517425 - L1MC4a LINE L1 -288 7520 7021 2077 140 3 16 chrX 42082505 42082819 -120517111 + AluJb SINE Alu 1 310 -2 2944 179 63 28 chrX 42082819 42083003 -120516927 - L1MC4a LINE L1 -787 7021 6845 5183 188 28 20 chrX 42083007 42084072 -120515858 - L1MC3 LINE L1 -7 7778 6705 850 239 82 87 chrX 42084099 42084668 -120515262 - LTR41 LTR ERVL -1 772 120 1842 227 75 16 chrX 42084675 42085484 -120514446 - L1MC4a LINE L1 -1512 6296 5390 909 116 4 43 chrX 42085483 42085638 -120514292 - L1ME4a LINE L1 -288 5833 5679 * 2097 181 26 46 chrX 42085649 42085844 -120514086 + L1MA9 LINE L1 5795 5992 -320 2146 124 24 32 chrX 42085844 42086222 -120513708 - THE1C LTR MaLR 0 375 1 2097 181 26 46 chrX 42086222 42086524 -120513406 + L1MA9 LINE L1 5992 6282 -30 316 307 0 9 chrX 42086537 42086651 -120513279 - L1MC4a LINE L1 -2428 5380 5268 916 196 12 120 chrX 42086651 42086703 -120513227 + MER58A DNA MER1_type 1 57 -2363 2246 92 0 3 chrX 42086703 42087019 -120512911 - AluY SINE Alu 0 315 1 916 196 12 120 chrX 42087019 42087176 -120512754 + MER58A DNA MER1_type 57 183 -2237 1228 142 163 75 chrX 42087176 42087508 -120512422 - MLT1A1 LTR MaLR 0 365 5 916 196 12 120 chrX 42087508 42087546 -120512384 + MER58A DNA MER1_type 183 223 -1 322 237 101 41 chrX 42087546 42087715 -120512215 - L1 LINE L1 -871 5275 5097 2440 69 0 31 chrX 42087889 42088208 -120511722 - AluY SINE Alu -2 309 1 946 217 85 9 chrX 42088278 42088596 -120511334 + L1MC4 LINE L1 7691 8032 -10 2324 133 25 14 chrX 42088734 42089096 -120510834 - MER47A DNA MER2_type 0 366 1 2238 113 0 3 chrX 42089120 42089412 -120510518 - AluSx SINE Alu -21 291 1 325 157 121 12 chrX 42089579 42089662 -120510268 - L1M4b LINE L1 -4500 2221 2130 1456 175 108 53 chrX 42089664 42090006 -120509924 + MLT1A2 LTR MaLR 1 361 -13 365 290 100 22 chrX 42090094 42090325 -120509605 - L1M4b LINE L1 -4766 1774 1526 3980 196 34 8 chrX 42090370 42091207 -120508723 - L1ME1 LINE L1 -2 6164 5307 456 372 54 18 chrX 42091306 42091696 -120508234 + MER89-int LTR ERV1 3512 3915 -2886 2662 196 154 66 chrX 42092139 42092983 -120506947 + LTR28 LTR ERV1 1 1020 0 1381 322 56 25 chrX 42093003 42093802 -120506128 + MER89-int LTR ERV1 2141 2964 -1683 2114 150 12 18 chrX 42093958 42094299 -120505631 - MER44D DNA MER2_type 0 609 1 1981 151 7 0 chrX 42094329 42094620 -120505310 - AluJo SINE Alu -15 297 5 745 261 0 19 chrX 42096498 42096709 -120503221 + L1M4 LINE L1 2390 2596 -3550 856 127 32 0 chrX 42096714 42096840 -120503090 + AluJb SINE Alu 162 291 -21 249 61 143 0 chrX 42096841 42096890 -120503040 + LTR64 LTR ERVK 503 558 0 252 0 0 0 chrX 42096890 42096920 -120503010 - L1M4b LINE L1 -5206 1334 1305 657 167 33 17 chrX 42096924 42097044 -120502886 - MSTC LTR MaLR -306 122 1 265 217 14 29 chrX 42097106 42097175 -120502755 - L1M4b LINE L1 -5685 757 690 2286 97 0 10 chrX 42097279 42097587 -120502343 - AluSg1 SINE Alu -4 305 1 401 346 21 17 chrX 42098502 42098742 -120501188 - PRIMA41-int LTR ERV1 -2899 4857 4617 198 103 0 0 chrX 42100803 42100832 -120499098 + (T)n Simple_repeat Simple_repeat 1 29 0 1337 167 35 125 chrX 42102147 42102572 -120497358 - PRIMA41-int LTR ERV1 -5183 1148 762 1720 185 11 3 chrX 42102575 42102862 -120497068 + AluJb SINE Alu 6 294 -18 1084 338 26 24 chrX 42102944 42103411 -120496519 - L1M4b LINE L1 -5183 1278 811 4512 145 32 101 chrX 42103444 42103891 -120496039 - L1M4c LINE L1 -5489 895 474 525 104 0 0 chrX 42103891 42103989 -120495941 - AluSg/x SINE Alu 0 309 212 4512 145 32 101 chrX 42103989 42104419 -120495511 - L1M4c LINE L1 -5910 474 16 1613 174 65 0 chrX 42104428 42104703 -120495227 - AluJo SINE Alu -19 293 1 311 188 12 50 chrX 42104704 42104784 -120495146 + L1M4 LINE L1 4845 4921 -1225 * 1735 92 17 8 chrX 42104779 42105038 -120494892 + L1PA10 LINE L1 5907 6167 0 941 201 15 57 chrX 42105038 42105302 -120494628 + L1M4 LINE L1 4907 5159 -987 188 283 0 17 chrX 42105624 42105684 -120494246 - L2 LINE L2 -225 3047 2989 1928 149 7 3 chrX 42106131 42106432 -120493498 - AluJo SINE Alu -10 302 1 431 220 22 0 chrX 42106648 42106739 -120493191 - L1M4b LINE L1 -5961 581 489 3305 77 4 13 chrX 42106854 42107309 -120492621 + LTR19B LTR ERV1 1 451 -129 12398 94 8 0 chrX 42107312 42109793 -120490137 + L1PA8 LINE L1 3679 6168 -4 201 162 0 0 chrX 42109922 42109959 -120489971 + A-rich Low_complexity Low_complexity 2 38 0 1002 107 0 0 chrX 42109959 42110099 -120489831 + LTR19A LTR ERV1 347 486 0 350 250 150 25 chrX 42110445 42110565 -120489365 - L2 LINE L2 -22 3250 3116 492 268 80 35 chrX 42110749 42111149 -120488781 - L1M4 LINE L1 -3578 2568 2151 2167 104 0 55 chrX 42111239 42111566 -120488364 - AluSx SINE Alu -3 309 1 1052 98 0 20 chrX 42111598 42111751 -120488179 - L1PA10 LINE L1 -1 6167 6018 23 0 0 0 chrX 42112034 42112057 -120487873 + AT_rich Low_complexity Low_complexity 1 23 0 1023 120 0 0 chrX 42113555 42113699 -120486231 + FRAM SINE Alu 1 144 -382 2471 46 0 0 chrX 42113699 42113984 -120485946 + AluY SINE Alu 1 285 -26 1023 120 0 0 chrX 42113984 42114062 -120485868 + FRAM SINE Alu 143 390 0 1352 156 5 5 chrX 42114152 42114376 -120485554 + L1PA15 LINE L1 5942 6165 0 1222 117 0 124 chrX 42115229 42115478 -120484452 - AluJo SINE Alu -26 286 69 297 253 25 0 chrX 42115835 42115914 -120484016 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 237 267 0 0 chrX 42117361 42117421 -120482509 + (CCCA)n Simple_repeat Simple_repeat 2 61 0 279 269 0 0 chrX 42117456 42117564 -120482366 + (CCCA)n Simple_repeat Simple_repeat 2 109 0 201 354 6 12 chrX 42118835 42118996 -120480934 + CT-rich Low_complexity Low_complexity 4 163 0 206 268 0 65 chrX 42119284 42119407 -120480523 + C-rich Low_complexity Low_complexity 2 116 0 2739 42 0 0 chrX 42120204 42120515 -120479415 - AluY SINE Alu 0 311 1 2215 97 27 0 chrX 42121231 42121529 -120478401 - AluSx SINE Alu -6 306 1 473 310 112 52 chrX 42121535 42122268 -120477662 - L1M4 LINE L1 -2700 3446 2670 2285 122 0 0 chrX 42122467 42122771 -120477159 - AluSx SINE Alu -8 304 1 1497 121 27 5 chrX 42123360 42123584 -120476346 + MER30 DNA MER1_type 2 230 0 1866 222 156 30 chrX 42123587 42124114 -120475816 + MLT1E LTR MaLR 1 593 0 241 250 45 23 chrX 42124159 42124247 -120475683 - HAL1b LINE L1 -923 425 336 275 248 57 0 chrX 42124766 42124871 -120475059 - MIR SINE MIR -60 148 38 625 283 43 75 chrX 42125100 42125630 -120474300 - L1ME4a LINE L1 -3 6118 5606 2074 128 3 3 chrX 42125647 42125953 -120473977 + AluSx SINE Alu 1 306 -6 1247 134 26 125 chrX 42125956 42126319 -120473611 + AluSx SINE Alu 2 333 0 1158 110 0 0 chrX 42126953 42127107 -120472823 - AluSg/x SINE Alu -25 287 134 2192 123 0 3 chrX 42127107 42127416 -120472514 - AluSx SINE Alu -4 308 1 426 242 21 0 chrX 42127455 42127550 -120472380 + MER94 DNA DNA 4 100 -34 1003 198 16 5 chrX 42127607 42127794 -120472136 + MER5A DNA MER1_type 1 189 0 189 94 0 0 chrX 42128259 42128291 -120471639 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1809 129 0 22 chrX 42128301 42128579 -120471351 - AluSx SINE Alu -40 272 1 185 65 32 0 chrX 42128674 42128705 -120471225 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 2190 103 0 27 chrX 42128880 42129180 -120470750 - AluSx SINE Alu -12 300 9 2951 193 14 52 chrX 42129249 42129825 -120470105 - MLT2B3 LTR ERVL 0 554 1 920 221 21 113 chrX 42129893 42130219 -120469711 + MLT1E-int LTR MaLR 1076 1371 0 2178 203 29 108 chrX 42130257 42130843 -120469087 + MLT1E LTR MaLR 52 591 -2 3830 24 0 0 chrX 42132250 42132665 -120467265 - L1PA4 LINE L1 -8 6147 5733 1818 19 0 0 chrX 42132665 42132870 -120467060 + L1P LINE L1 1671 1875 -4271 468 209 147 8 chrX 42132970 42133099 -120466831 - L1MB7 LINE L1 -31 6153 6007 4124 47 2 0 chrX 42133100 42133571 -120466359 + L1PA7 LINE L1 5682 6153 -1 37 0 0 0 chrX 42133571 42133608 -120466322 + AT_rich Low_complexity Low_complexity 1 37 0 298 274 43 74 chrX 42133616 42133762 -120466168 - L1M4 LINE L1 -2310 3836 3698 1767 104 108 32 chrX 42133762 42133898 -120466032 - AluSx SINE Alu -13 299 175 2388 77 0 7 chrX 42133898 42134196 -120465734 - AluY SINE Alu -15 296 1 1767 104 108 32 chrX 42134196 42134337 -120465593 - AluSx SINE Alu -137 175 1 298 274 43 74 chrX 42134337 42134420 -120465510 - L1M4 LINE L1 -2448 3698 3614 313 296 0 0 chrX 42134516 42134631 -120465299 - L1M4 LINE L1 -2674 3472 3358 190 274 16 16 chrX 42134641 42134703 -120465227 + L2 LINE L2 1920 1981 -1333 2507 47 7 3 chrX 42134719 42135016 -120464914 - AluY SINE Alu -13 298 1 1686 141 16 1 chrX 42135171 42135448 -120464482 - L1MB7 LINE L1 -176 6008 5725 2316 164 13 8 chrX 42135477 42135860 -120464070 - MSTB1 LTR MaLR -47 385 1 1684 149 55 26 chrX 42135860 42136037 -120463893 - MSTB1-int LTR MaLR 0 1651 1460 2460 81 0 0 chrX 42136037 42136347 -120463583 + AluSx SINE Alu 1 310 -2 1684 149 55 26 chrX 42136347 42136478 -120463452 - MSTB1-int LTR MaLR -191 1460 1334 767 229 7 0 chrX 42136503 42136647 -120463283 - FRAM SINE Alu -30 146 2 21 0 0 0 chrX 42136717 42136738 -120463192 + AT_rich Low_complexity Low_complexity 1 21 0 1053 185 6 29 chrX 42137547 42137720 -120462210 + FAM SINE Alu 1 169 -6 878 139 7 0 chrX 42138543 42138680 -120461250 - FLAM_C SINE Alu -5 138 1 439 235 48 7 chrX 42139812 42139946 -120459984 - MLT1H LTR MaLR -236 205 34 340 358 11 32 chrX 42140127 42140314 -120459616 + L1 LINE L1 4665 4847 -1299 804 150 0 0 chrX 42140360 42140480 -120459450 + AluSq/x SINE Alu 1 120 -192 23 0 0 0 chrX 42140480 42140503 -120459427 + AT_rich Low_complexity Low_complexity 1 23 0 250 234 0 31 chrX 42140532 42140596 -120459334 + L1 LINE L1 4924 4985 -1161 514 219 19 52 chrX 42140689 42140844 -120459086 + MER90 LTR ERV1 6 155 -420 304 214 83 12 chrX 42141159 42141243 -120458687 + MIR SINE MIR 160 249 -13 1847 162 0 26 chrX 42141269 42141572 -120458358 - AluJb SINE Alu -12 300 6 277 322 78 24 chrX 42142247 42142502 -120457428 - L1M4 LINE L1 -2000 4146 3878 540 208 20 0 chrX 42142509 42142610 -120457320 - HERV16 LTR ERVL -3158 1838 1736 1520 266 71 33 chrX 42142817 42143363 -120456567 - HERV16 LTR ERVL -3819 1177 611 2092 216 81 18 chrX 42143364 42143868 -120456062 + MLT1F LTR MaLR 1 536 -6 1319 254 33 15 chrX 42143874 42144209 -120455721 - HERV16 LTR ERVL -4382 614 274 699 310 10 5 chrX 42144243 42144446 -120455484 - HERV16 LTR ERVL -4791 205 2 1403 244 114 8 chrX 42144447 42144832 -120455098 - LTR16A LTR ERVL 0 450 25 907 243 0 6 chrX 42145284 42145461 -120454469 + MER41D LTR ERV1 382 557 0 617 219 0 17 chrX 42145849 42145968 -120453962 - LTR28 LTR ERV1 0 1020 904 915 214 249 49 chrX 42145969 42146338 -120453592 - LTR28 LTR ERV1 -270 750 308 711 159 194 3 chrX 42146347 42146486 -120453444 - LTR28 LTR ERV1 -600 678 1 229 321 37 30 chrX 42146775 42146909 -120453021 - MER87 LTR ERV1 0 541 407 207 0 0 0 chrX 42147325 42147348 -120452582 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 242 206 59 15 chrX 42147398 42147466 -120452464 + LTR58 LTR ERV1 350 420 -259 311 279 54 102 chrX 42147827 42147974 -120451956 - L1MDa LINE L1 -5586 954 815 436 270 72 78 chrX 42148231 42148590 -120451340 - L1MDa LINE L1 -5840 700 344 1919 132 3 21 chrX 42148776 42149063 -120450867 - AluJo SINE Alu -17 295 14 1763 223 31 13 chrX 42149374 42149765 -120450165 + MER90 LTR ERV1 217 614 0 2803 142 31 10 chrX 42150882 42151299 -120448631 - MSTB LTR MaLR 0 426 1 189 107 0 0 chrX 42151660 42151688 -120448242 + (TAA)n Simple_repeat Simple_repeat 1 28 0 258 32 0 0 chrX 42151745 42151776 -120448154 + (CA)n Simple_repeat Simple_repeat 2 32 0 792 200 114 11 chrX 42151896 42152071 -120447859 - L1MD2 LINE L1 -270 6089 5897 350 224 19 19 chrX 42152068 42152175 -120447755 - L1M4 LINE L1 -2193 3953 3847 * 270 290 31 4 chrX 42152177 42152309 -120447621 + MIR SINE MIR 42 231 -31 1402 264 33 41 chrX 42152404 42152917 -120447013 - MLT1H LTR MaLR -4 545 3 1473 265 20 47 chrX 42152920 42153456 -120446474 + HAL1 LINE L1 1978 2499 -8 2335 101 0 3 chrX 42153502 42153800 -120446130 + AluSx SINE Alu 1 297 -15 2331 80 0 13 chrX 42153917 42154216 -120445714 + AluSc SINE Alu 1 295 -14 469 285 105 52 chrX 42154323 42154679 -120445251 + L1ME4a LINE L1 5410 5800 -321 2398 101 0 0 chrX 42154679 42154976 -120444954 + AluSx SINE Alu 1 297 -15 469 285 105 52 chrX 42154976 42155103 -120444827 + L1ME4a LINE L1 5800 5919 -202 278 292 62 21 chrX 42155423 42155567 -120444363 - L1M4 LINE L1 -3104 3042 2893 25 0 0 0 chrX 42155596 42155621 -120444309 + AT_rich Low_complexity Low_complexity 1 25 0 1839 209 128 22 chrX 42155634 42156149 -120443781 - MLT1F1 LTR MaLR 0 567 1 25 0 0 0 chrX 42156815 42156840 -120443090 + AT_rich Low_complexity Low_complexity 1 25 0 7257 70 18 4 chrX 42156846 42157822 -120442108 - L1PA13 LINE L1 -11 6152 5172 2067 168 10 5 chrX 42157822 42158210 -120441720 + L1 LINE L1 4384 4773 -1373 * 8329 228 37 11 chrX 42158208 42158814 -120441116 - L1MCb LINE L1 -1581 5360 4772 2549 67 0 0 chrX 42158814 42159113 -120440817 - AluSp SINE Alu -14 299 1 8329 228 37 11 chrX 42159113 42160939 -120438991 - L1MCb LINE L1 -2169 4772 2810 2272 102 0 7 chrX 42160939 42161233 -120438697 - AluSq SINE Alu -21 292 1 8329 228 37 11 chrX 42161233 42161273 -120438657 - L1MCb LINE L1 -4131 2810 2773 2252 152 22 8 chrX 42161274 42161675 -120438255 + MER95 LTR ERV 1 407 -24 547 214 28 41 chrX 42161676 42161896 -120438034 - L1MCb LINE L1 -4223 2753 2412 1398 98 69 0 chrX 42161896 42162099 -120437831 - L1PA16 LINE L1 -7 6159 5943 547 214 28 41 chrX 42162099 42162177 -120437753 - L1MCb LINE L1 -4564 2412 2334 * 7429 169 65 24 chrX 42162175 42163552 -120436378 + L1PA12 LINE L1 10 1442 -6139 2519 199 2 0 chrX 42163633 42164145 -120435785 + L1P LINE L1 2616 3128 -3018 6787 88 3 5 chrX 42164145 42165370 -120434560 + L1PA14 LINE L1 4924 6160 -1 1916 247 64 10 chrX 42165370 42166058 -120433872 - L1MCb LINE L1 -4597 2344 1536 668 273 115 51 chrX 42166049 42166441 -120433489 - L1MCb LINE L1 -5702 720 3 * 277 253 13 0 chrX 42167338 42167413 -120432517 - MIR SINE MIR -8 254 179 385 256 8 30 chrX 42167464 42167597 -120432333 - L1 LINE L1 -1092 5054 4925 1607 186 38 78 chrX 42167634 42168031 -120431899 + MLT1C LTR MaLR 80 460 -7 283 297 70 41 chrX 42168095 42168317 -120431613 - L1 LINE L1 -1285 4861 4629 356 291 93 29 chrX 42168412 42168606 -120431324 + MLT1H LTR MaLR 3 252 -297 3019 128 36 16 chrX 42169136 42169228 -120430702 + L1MA4 LINE L1 5795 5884 -416 2232 132 0 0 chrX 42169228 42169531 -120430399 + AluSx SINE Alu 1 303 -9 3019 128 36 16 chrX 42169531 42169932 -120429998 + L1MA4 LINE L1 5884 6298 -2 895 262 56 77 chrX 42170461 42170926 -120429004 - LTR16A1 LTR ERVL -2 455 1 333 0 0 0 chrX 42171312 42171349 -120428581 + (TG)n Simple_repeat Simple_repeat 1 37 0 3078 110 16 12 chrX 42171471 42171897 -120428033 - MSTA LTR MaLR 0 428 1 186 43 0 0 chrX 42173357 42173380 -120426550 + (ATG)n Simple_repeat Simple_repeat 2 24 0 609 234 25 98 chrX 42173396 42173631 -120426299 - MIR SINE MIR -11 251 34 3908 106 11 30 chrX 42173799 42174336 -120425594 - MER1A DNA MER1_type 0 527 1 402 154 0 0 chrX 42174584 42174662 -120425268 + (CA)n Simple_repeat Simple_repeat 1 78 0 313 263 60 23 chrX 42175451 42175584 -120424346 + L1MC4a LINE L1 6057 6194 -1614 23 33 0 0 chrX 42175956 42175986 -120423944 + AT_rich Low_complexity Low_complexity 1 30 0 15178 49 0 9 chrX 42175989 42177847 -120422083 + L1P LINE L1 1 1842 -4304 * 43706 33 21 1 chrX 42177845 42183871 -120416059 - L1PA2 LINE L1 -1 6154 3 21860 25 0 0 chrX 42183870 42186415 -120413515 + L1P LINE L1 1833 4377 -1769 * 728 168 4 16 chrX 42186406 42186552 -120413378 + L1MC5 LINE L1 7100 7243 -733 * 901 249 62 21 chrX 42186679 42186968 -120412962 + L1MC5 LINE L1 7270 7570 -391 1011 158 6 18 chrX 42187007 42187178 -120412752 - AluJb SINE Alu -7 305 137 5052 166 84 19 chrX 42187179 42188070 -120411860 + L1MD2 LINE L1 4848 5680 -679 251 27 0 27 chrX 42188070 42188107 -120411823 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 5052 166 84 19 chrX 42188107 42188174 -120411756 + L1MD2 LINE L1 5680 5741 -618 2165 153 37 3 chrX 42188174 42188528 -120411402 - MER47A DNA MER2_type 0 366 1 5052 166 84 19 chrX 42188528 42188823 -120411107 + L1MD2 LINE L1 5741 6215 -144 2084 138 67 59 chrX 42188869 42189153 -120410777 + MSTD LTR MaLR 1 290 -106 2280 123 0 0 chrX 42189153 42189463 -120410467 - AluSq SINE Alu -3 310 1 2084 138 67 59 chrX 42189463 42189569 -120410361 + MSTD LTR MaLR 290 394 -2 491 189 161 96 chrX 42189571 42189831 -120410099 + L1MC5 LINE L1 7609 7885 -76 2013 169 33 19 chrX 42190037 42190397 -120409533 + MLT1A1 LTR MaLR 1 365 0 877 172 14 0 chrX 42190607 42190752 -120409178 + MER58B DNA MER1_type 195 341 0 3421 150 16 2 chrX 42190782 42191296 -120408634 + Tigger7 DNA MER2_type 1 521 -212 563 178 0 0 chrX 42191295 42191385 -120408545 + Tigger7 DNA MER2_type 2396 2485 -2 * 1230 177 10 0 chrX 42191433 42191636 -120408294 - MER70B LTR ERVL -361 217 13 3161 165 4 0 chrX 42191949 42192416 -120407514 + MER70A LTR ERVL 1 469 -3 298 217 0 0 chrX 42192984 42193044 -120406886 - LOR1-int LTR ERV1 -251 7505 7446 278 333 53 53 chrX 42193018 42193189 -120406741 - LOR1-int LTR ERV1 -253 6869 6699 * 428 178 14 0 chrX 42193260 42193333 -120406597 - MER49 LTR ERV1 -163 760 687 857 164 88 6 chrX 42193350 42193509 -120406421 - LOR1-int LTR ERV1 -181 6150 5979 12843 152 55 59 chrX 42193704 42196390 -120403540 - LOR1-int LTR ERV1 -514 5432 2758 2542 162 24 22 chrX 42196425 42196888 -120403042 - LOR1-int LTR ERV1 -2594 2286 1823 250 259 0 17 chrX 42196888 42196946 -120402984 - tRNA-Gly-GGG tRNA tRNA -10 64 8 641 190 58 8 chrX 42196948 42197069 -120402861 - LOR1-int LTR ERV1 -3120 1760 1634 * 647 136 31 14 chrX 42197058 42197251 -120402679 - LOR1-int LTR ERV1 -2530 4068 1701 253 27 0 0 chrX 42197282 42197319 -120402611 - MER41A LTR ERV1 -87 467 431 213 39 0 0 chrX 42198639 42198665 -120401265 + (TCC)n Simple_repeat Simple_repeat 1 26 0 511 233 127 20 chrX 42199800 42199950 -120399980 - MIR3 SINE MIR -22 186 21 198 0 0 0 chrX 42201507 42201529 -120398401 + (A)n Simple_repeat Simple_repeat 1 22 0 469 172 10 20 chrX 42202891 42202989 -120396941 - MER41B LTR ERV1 -107 528 432 2185 145 33 8 chrX 42202989 42203355 -120396575 - THE1C LTR MaLR 0 375 1 * 3079 111 2 2 chrX 42203355 42203791 -120396139 - MER41B LTR ERV1 -199 436 1 5893 116 17 17 chrX 42203793 42204693 -120395237 - MER41B-int LTR ERV1 -3 5943 5044 293 53 0 0 chrX 42204679 42204717 -120395213 - MER41B-int LTR ERV1 -1724 4222 4185 * 225 0 0 0 chrX 42204718 42204743 -120395187 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 9422 125 58 30 chrX 42204743 42206635 -120393295 - MER41B-int LTR ERV1 -2045 5005 2535 3016 98 26 32 chrX 42206610 42207071 -120392859 - MER41B-int LTR ERV1 -4157 1789 1332 * 4847 114 18 31 chrX 42207055 42207150 -120392780 - MER41B-int LTR ERV1 -5243 703 608 2229 81 14 7 chrX 42207150 42207445 -120392485 + AluSc SINE Alu 1 297 -12 4847 114 18 31 chrX 42207445 42208061 -120391869 - MER41B-int LTR ERV1 -5338 608 1 1027 93 33 0 chrX 42208061 42208211 -120391719 - MER41B LTR ERV1 0 554 400 3243 152 89 44 chrX 42208212 42208957 -120390973 - LTR36-int LTR ERV1 -6482 1638 861 859 240 26 30 chrX 42209029 42209262 -120390668 - LTR36-int LTR ERV1 -2723 1562 1331 621 283 7 87 chrX 42209590 42209876 -120390054 - LTR36-int LTR ERV1 -1422 364 102 1548 207 220 29 chrX 42209932 42210445 -120389485 - LTR36 LTR ERV1 0 611 1 3574 128 129 38 chrX 42210449 42211040 -120388890 + LTR8A LTR ERV1 1 661 -66 2280 81 0 17 chrX 42211040 42211336 -120388594 - AluSc SINE Alu -18 291 1 3574 128 129 38 chrX 42211336 42211410 -120388520 + LTR8A LTR ERV1 661 727 0 644 111 30 0 chrX 42211410 42211509 -120388421 + L1MB2 LINE L1 6068 6169 -2 718 196 60 91 chrX 42211551 42211750 -120388180 - LTR43 LTR ERV1 -287 315 123 445 110 24 0 chrX 42211892 42211974 -120387956 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 595 298 76 41 chrX 42212008 42212106 -120387824 + L1M4 LINE L1 3722 3815 -2331 2656 166 140 17 chrX 42212106 42212642 -120387288 - LTR43 LTR ERV1 0 602 1 595 298 76 41 chrX 42212642 42213029 -120386901 + L1M4 LINE L1 3815 4224 -1922 1526 264 133 59 chrX 42213126 42213788 -120386142 + MER50 LTR ERV1 1 711 -23 191 295 49 0 chrX 42214308 42214369 -120385561 + L2 LINE L2 2992 3055 -217 2397 128 22 33 chrX 42214603 42214971 -120384959 + THE1B LTR MaLR 1 364 0 500 204 43 66 chrX 42215077 42215288 -120384642 + L1MC5 LINE L1 7696 7901 -60 1003 304 85 39 chrX 42215351 42215479 -120384451 + L1MB8 LINE L1 2328 2449 -3729 237 65 0 0 chrX 42215479 42215510 -120384420 + (TG)n Simple_repeat Simple_repeat 2 32 0 1003 304 85 39 chrX 42215510 42216608 -120383322 + L1MB8 LINE L1 2449 5848 -330 299 253 0 0 chrX 42216874 42216949 -120382981 - L1ME3 LINE L1 -9 6153 6079 * 6951 183 117 96 chrX 42216948 42218444 -120381486 + L1MCa LINE L1 19 1481 -4945 2636 136 56 10 chrX 42218444 42218857 -120381073 - MSTB1 LTR MaLR 0 432 1 6951 183 117 96 chrX 42218857 42219713 -120380217 + L1MCa LINE L1 1481 2431 -3995 2470 100 21 32 chrX 42219713 42220092 -120379838 - THE1C LTR MaLR 0 375 1 6951 183 117 96 chrX 42220092 42220258 -120379672 + L1MCa LINE L1 2431 2592 -3834 22 94 0 0 chrX 42220336 42220400 -120379530 + AT_rich Low_complexity Low_complexity 1 64 0 933 255 23 6 chrX 42220478 42220746 -120379184 + L1MD2 LINE L1 5313 5592 -655 1278 265 69 56 chrX 42221124 42221239 -120378691 + L1MC4 LINE L1 7094 7206 -836 2851 171 51 6 chrX 42221239 42221730 -120378200 - LTR44 LTR ERV1 -4 515 3 1278 265 69 56 chrX 42221730 42222298 -120377632 + L1MC4 LINE L1 7206 7786 -256 412 191 11 14 chrX 42222303 42222394 -120377536 + L1MD2 LINE L1 6028 6132 -55 868 201 0 0 chrX 42222396 42222550 -120377380 + FRAM SINE Alu 2 155 -21 2167 114 0 7 chrX 42222557 42222854 -120377076 + AluSx SINE Alu 1 295 -17 233 258 0 0 chrX 42222949 42223011 -120376919 + L1MC4 LINE L1 7768 7829 -213 1838 196 16 16 chrX 42223011 42223470 -120376460 - MER89 LTR ERV1 -1 558 1 863 137 0 0 chrX 42223785 42223902 -120376028 + FLAM_C SINE Alu 1 117 -16 558 0 0 0 chrX 42223907 42223969 -120375961 + (TG)n Simple_repeat Simple_repeat 2 63 0 420 230 44 7 chrX 42224150 42224285 -120375645 + L1MC4 LINE L1 7903 8042 0 3413 77 21 10 chrX 42224660 42225140 -120374790 + L1MA1 LINE L1 5660 6144 -158 2400 77 0 0 chrX 42225146 42225433 -120374497 - AluSg1 SINE Alu -22 287 1 24 0 0 0 chrX 42225433 42225457 -120374473 + AT_rich Low_complexity Low_complexity 1 24 0 300 270 20 60 chrX 42225562 42225662 -120374268 + L2 LINE L2 3173 3268 -45 3656 61 30 2 chrX 42226266 42226707 -120373223 - MLT2A2 LTR ERVL 0 453 1 373 123 18 0 chrX 42226769 42226826 -120373104 + AluJ/FRAM SINE Alu 228 285 -17 207 0 0 0 chrX 42226826 42226849 -120373081 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 2017 130 0 26 chrX 42227060 42227368 -120372562 - AluJo SINE Alu -12 300 1 1173 239 52 38 chrX 42227476 42227553 -120372377 - L1ME LINE L1 -390 6166 6092 2841 108 60 34 chrX 42227553 42227744 -120372186 + MSTC LTR MaLR 1 185 -243 1814 79 146 0 chrX 42227744 42227997 -120371933 + AluSg SINE Alu 1 290 -20 2841 108 60 34 chrX 42227997 42228220 -120371710 + MSTC LTR MaLR 185 426 -2 1173 239 52 38 chrX 42228220 42228565 -120371365 - L1ME LINE L1 -464 6092 5738 1899 215 39 23 chrX 42228775 42229165 -120370765 + MSTD LTR MaLR 1 396 0 3292 154 76 7 chrX 42229202 42229820 -120370110 + LTR65 LTR ERV1 9 669 0 258 308 94 43 chrX 42229938 42230055 -120369875 - L2 LINE L2 -173 3099 2977 226 276 148 20 chrX 42231368 42231564 -120368366 - L1M4 LINE L1 -3246 2900 2680 5852 224 47 39 chrX 42231684 42232961 -120366969 - L1ME LINE L1 -1139 5401 4135 1892 162 7 0 chrX 42232961 42233258 -120366672 - AluJb SINE Alu -13 299 1 5852 224 47 39 chrX 42233258 42233514 -120366416 - L1ME LINE L1 -2405 4135 3882 2366 118 16 25 chrX 42233514 42233878 -120366052 + MER46B DNA MER2_type 1 236 0 5852 224 47 39 chrX 42233878 42233998 -120365932 - L1ME LINE L1 -2658 3882 3764 1631 104 45 0 chrX 42233998 42234218 -120365712 - MER30 DNA MER1_type 0 230 1 5852 224 47 39 chrX 42234218 42234305 -120365625 - L1ME LINE L1 -2776 3764 3646 2576 60 0 13 chrX 42234666 42234980 -120364950 - AluSp SINE Alu -2 311 2 2255 205 74 9 chrX 42235877 42236458 -120363472 - L1ME LINE L1 -2869 3671 3053 777 217 48 73 chrX 42236442 42236746 -120363184 - L1MDb LINE L1 -6152 388 105 * 2163 116 6 10 chrX 42236786 42237097 -120362833 - AluSx SINE Alu 0 312 3 180 111 0 0 chrX 42237261 42237288 -120362642 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 1205 172 18 7 chrX 42237295 42237537 -120362393 - L1MB8 LINE L1 -302 5819 5630 265 152 0 0 chrX 42237543 42237589 -120362341 - L1MB8 LINE L1 -745 5433 5388 297 0 0 0 chrX 42237606 42237639 -120362291 + (CA)n Simple_repeat Simple_repeat 2 34 0 369 302 60 54 chrX 42237646 42237698 -120362232 - L1M4 LINE L1 -2888 3258 3208 1936 160 0 7 chrX 42237698 42237998 -120361932 - AluJb SINE Alu -14 298 1 369 302 60 54 chrX 42237998 42238243 -120361687 - L1M4 LINE L1 -2938 3208 2959 4255 164 9 40 chrX 42238325 42239132 -120360798 - L1MB8 LINE L1 -9 6169 5388 202 150 0 25 chrX 42239319 42239359 -120360571 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 301 351 126 14 chrX 42239912 42240134 -120359796 - MIR SINE MIR -10 252 6 906 249 118 6 chrX 42240948 42241277 -120358653 - HAL1 LINE L1 -212 2295 1930 441 252 43 26 chrX 42241287 42241402 -120358528 - MIR SINE MIR -1 261 145 1093 128 0 0 chrX 42241402 42241551 -120358379 - FRAM SINE Alu -26 150 2 342 252 77 17 chrX 42241551 42241655 -120358275 - MIR SINE MIR -62 146 58 1154 221 76 7 chrX 42241671 42241947 -120357983 - HAL1 LINE L1 -580 1927 1633 260 259 0 25 chrX 42242009 42242090 -120357840 - HAL1 LINE L1 -857 1650 1572 2507 57 0 3 chrX 42242092 42242388 -120357542 - AluY SINE Alu -16 295 1 381 277 107 22 chrX 42242464 42242735 -120357195 - HAL1 LINE L1 -1253 1254 961 1583 110 48 13 chrX 42242809 42243036 -120356894 + MER46A DNA MER2_type 1 235 -1 22 70 0 0 chrX 42243200 42243243 -120356687 + AT_rich Low_complexity Low_complexity 1 43 0 386 263 61 0 chrX 42243261 42243360 -120356570 - L1ME LINE L1 -450 5720 5616 275 239 0 28 chrX 42243376 42243447 -120356483 - L1ME3A LINE L1 -8 6162 6094 2433 95 0 13 chrX 42243559 42243876 -120356054 + AluSq SINE Alu 1 313 0 1267 234 107 31 chrX 42243880 42244404 -120355526 + L1M3 LINE L1 5203 5766 -402 852 182 8 0 chrX 42244404 42244536 -120355394 + FLAM_C SINE Alu 1 133 0 1267 234 107 31 chrX 42244536 42244548 -120355382 + L1M3 LINE L1 5766 5776 -392 340 225 27 28 chrX 42244562 42244684 -120355246 + L1ME3A LINE L1 5847 5967 -195 235 254 70 90 chrX 42244740 42244941 -120354989 + L1ME3A LINE L1 5966 6162 -8 405 58 0 0 chrX 42245057 42245109 -120354821 + (CA)n Simple_repeat Simple_repeat 1 52 0 1356 279 27 43 chrX 42245146 42245774 -120354156 - L1MC4a LINE L1 -1894 5914 5297 15248 104 23 74 chrX 42246160 42247352 -120352578 - Tigger1 DNA MER2_type 0 2418 1167 2475 63 0 17 chrX 42247352 42247653 -120352277 - AluSc SINE Alu -13 296 1 15248 104 23 74 chrX 42247653 42247716 -120352214 - Tigger1 DNA MER2_type -1251 1167 1102 1780 173 10 13 chrX 42247716 42248023 -120351907 - AluJo SINE Alu -6 306 1 15248 104 23 74 chrX 42248023 42248987 -120350943 - Tigger1 DNA MER2_type -1316 1102 341 2351 75 0 3 chrX 42248987 42249279 -120350651 + AluSg1 SINE Alu 1 291 -18 15248 104 23 74 chrX 42249279 42249603 -120350327 - Tigger1 DNA MER2_type -2077 341 2 21 0 0 0 chrX 42249824 42249845 -120350085 + AT_rich Low_complexity Low_complexity 1 21 0 2298 125 0 0 chrX 42249940 42250252 -120349678 + AluSx SINE Alu 1 312 0 2069 97 30 34 chrX 42250836 42251134 -120348796 + AluSx SINE Alu 1 297 -15 279 279 237 5 chrX 42251698 42251913 -120348017 + L2 LINE L2 1477 1741 -1573 387 260 46 66 chrX 42252675 42252871 -120347059 - L1M4 LINE L1 -3715 2431 2240 2476 74 3 7 chrX 42252982 42253292 -120346638 + AluSp SINE Alu 1 309 -4 35 41 0 0 chrX 42253339 42253388 -120346542 + AT_rich Low_complexity Low_complexity 1 49 0 227 121 0 0 chrX 42253744 42253777 -120346153 - L1MC5 LINE L1 -389 7572 7540 1657 184 110 11 chrX 42253791 42254154 -120345776 - LTR40b LTR ERVL 0 462 64 323 191 155 48 chrX 42254154 42254238 -120345692 + MER21B LTR ERV1 1 93 -770 1279 193 94 33 chrX 42254257 42254352 -120345578 + MER21B LTR ERV1 19 107 -756 1855 72 0 25 chrX 42254352 42254588 -120345342 - AluY SINE Alu -15 296 67 1279 193 94 33 chrX 42254588 42254767 -120345163 + MER21B LTR ERV1 107 310 -553 499 186 78 10 chrX 42254776 42254878 -120345052 + MER21B LTR ERV1 564 672 -191 614 214 17 0 chrX 42254912 42255029 -120344901 + MER21B LTR ERV1 312 430 -433 411 225 22 0 chrX 42255063 42255152 -120344778 + MER21B LTR ERV1 19 109 -754 1544 185 133 5 chrX 42255153 42255536 -120344394 + MER21B LTR ERV1 431 862 -1 398 179 0 0 chrX 42255543 42255610 -120344320 - LTR40a LTR ERVL -449 70 4 911 195 50 106 chrX 42255612 42255894 -120344036 - HERVL40 LTR ERVL -3 5527 5262 735 302 71 44 chrX 42255854 42256264 -120343666 - MER89-int LTR ERV1 -298 6503 6083 * 2256 78 33 16 chrX 42256419 42256725 -120343205 + AluSq SINE Alu 1 311 -2 1780 237 89 18 chrX 42256873 42257387 -120342543 - MER92C LTR ERV1 -3 551 1 862 329 19 22 chrX 42257675 42258085 -120341845 - MER92C-int LTR ERV1 -248 6553 6145 9147 239 53 20 chrX 42258095 42260294 -120339636 - HERVL40 LTR ERVL -1284 4246 1977 614 232 29 0 chrX 42260301 42260439 -120339491 - LTR40b LTR ERVL -15 447 306 2768 164 69 78 chrX 42260448 42260963 -120338967 - MER67C LTR ERV1 0 710 202 3778 76 13 4 chrX 42260963 42261438 -120338492 + L1PA10 LINE L1 5680 6158 -10 2768 164 69 78 chrX 42261438 42261636 -120338294 - MER67C LTR ERV1 -508 202 4 297 51 0 0 chrX 42263838 42263877 -120336053 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2044 139 3 0 chrX 42263880 42264168 -120335762 - AluSx SINE Alu -23 289 1 298 274 103 77 chrX 42264443 42264677 -120335253 - MER92C-int LTR ERV1 -2281 5438 5199 180 0 0 0 chrX 42267827 42267847 -120332083 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2096 127 0 3 chrX 42267849 42268141 -120331789 - AluSx SINE Alu -21 291 1 2832 186 86 28 chrX 42269858 42270512 -120329418 - MER67C LTR ERV1 0 710 19 586 227 32 25 chrX 42270527 42270790 -120329140 - LTR40c LTR ERVL -157 308 4 4318 266 49 58 chrX 42270797 42272356 -120327574 - HERVL40 LTR ERVL -3564 1966 422 548 264 21 14 chrX 42272507 42272651 -120327279 - HERVL40 LTR ERVL -4354 1176 1032 858 267 102 8 chrX 42272681 42272917 -120327013 - HERVL40 LTR ERVL -5201 329 72 2155 170 35 51 chrX 42272917 42273410 -120326520 - MLT1D LTR MaLR 0 505 21 327 217 0 0 chrX 42273441 42273501 -120326429 - HERVL40 LTR ERVL -5454 76 17 2040 235 81 6 chrX 42273515 42273996 -120325934 - LTR40a LTR ERVL -2 517 1 889 204 40 55 chrX 42273996 42274307 -120325623 - L1MC5 LINE L1 -393 7415 7269 236 118 0 0 chrX 42274358 42274392 -120325538 - L1MC4 LINE L1 -799 7243 7210 1930 155 3 3 chrX 42274398 42274688 -120325242 - AluJb SINE Alu -22 290 1 287 219 0 37 chrX 42274701 42274783 -120325147 - L1MC5 LINE L1 -811 7150 7072 2017 118 10 3 chrX 42274948 42275237 -120324693 - MSTC LTR MaLR 0 428 138 2935 104 90 2 chrX 42275246 42275658 -120324272 + MER83 LTR ERV1 1 448 0 207 0 0 0 chrX 42275943 42275966 -120323964 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1467 177 51 4 chrX 42275968 42276222 -120323708 - AluJo SINE Alu -30 282 17 2355 200 79 77 chrX 42276256 42276327 -120323603 - L1ME2 LINE L1 -1 6097 6028 242 180 20 0 chrX 42276327 42276377 -120323553 - LTR66 LTR ERVL -165 445 395 2355 200 79 77 chrX 42276377 42276883 -120323047 - L1ME2 LINE L1 -70 6028 5525 2195 126 3 0 chrX 42276883 42277193 -120322737 + AluSx SINE Alu 1 311 -1 2355 200 79 77 chrX 42277193 42277746 -120322184 - L1ME2 LINE L1 -573 5525 4914 440 210 132 59 chrX 42277743 42277962 -120321968 - L1ME2 LINE L1 -2953 3127 2893 * 1002 202 27 65 chrX 42277965 42278140 -120321790 + MLT1E LTR MaLR 1 164 -429 2463 79 0 0 chrX 42278140 42278444 -120321486 + AluSg1 SINE Alu 1 304 -5 1002 202 27 65 chrX 42278444 42278530 -120321400 + MLT1E LTR MaLR 164 252 -341 910 201 64 29 chrX 42278532 42278736 -120321194 - MLT1E LTR MaLR -62 531 321 304 183 0 17 chrX 42278734 42278794 -120321136 + MLT1F LTR MaLR 484 542 0 * 339 215 149 9 chrX 42278798 42278905 -120321025 + MLT1F-int LTR MaLR 5 126 -1609 343 315 49 28 chrX 42278908 42279051 -120320879 + MLT1F-int LTR MaLR 737 882 -489 1693 232 96 62 chrX 42279237 42279632 -120320298 - L1ME2 LINE L1 -4665 1415 1035 1583 158 32 120 chrX 42279632 42280032 -120319898 - MLT1A1 LTR MaLR 0 365 1 1693 232 96 62 chrX 42280032 42280757 -120319173 - L1ME2 LINE L1 -5045 1035 257 1017 176 6 0 chrX 42280762 42280927 -120319003 - AluJb SINE Alu 0 312 147 490 270 22 29 chrX 42280992 42281129 -120318801 - L1ME2 LINE L1 -5903 167 32 1465 196 57 19 chrX 42281153 42281517 -120318413 - L1M4 LINE L1 -1151 4995 4616 612 225 189 13 chrX 42281525 42281752 -120318178 + L1M4 LINE L1 2562 2828 -3318 24 0 0 0 chrX 42281930 42281954 -120317976 + AT_rich Low_complexity Low_complexity 1 24 0 1941 155 48 109 chrX 42282335 42282832 -120317098 + MLT1C LTR MaLR 1 467 0 2865 149 13 12 chrX 42282832 42283426 -120316504 + MLT1C-int LTR MaLR 1 709 -662 308 206 0 0 chrX 42283418 42283481 -120316449 + MLT1C-int LTR MaLR 825 887 -484 * 299 317 10 0 chrX 42283543 42283644 -120316286 + MLT-int LTR MaLR 676 777 -958 2862 96 36 12 chrX 42283772 42284190 -120315740 - MSTA LTR MaLR 0 428 1 15123 177 15 7 chrX 42284589 42287220 -120312710 - ERVL LTR ERVL -2402 3362 642 2330 184 2 41 chrX 42287214 42287681 -120312249 - MER31B-int LTR ERV1 -4157 779 331 * 851 113 0 0 chrX 42287873 42287988 -120311942 + AluSg/x SINE Alu 187 301 -11 798 182 63 0 chrX 42287988 42288131 -120311799 - MER31B-int LTR ERV1 -4775 161 10 1743 136 22 95 chrX 42288174 42288572 -120311358 - MER31B LTR ERV1 0 661 90 1640 154 19 0 chrX 42288573 42288832 -120311098 - ERVL LTR ERVL -695 5069 4806 2171 140 25 81 chrX 42288852 42289294 -120310636 + MLT1C-int LTR MaLR 955 1371 0 1299 128 102 13 chrX 42289296 42289531 -120310399 + MLT1C LTR MaLR 3 258 -209 1138 200 32 56 chrX 42289525 42289810 -120310120 + MLT1C LTR MaLR 190 467 0 * 354 221 18 35 chrX 42290742 42290761 -120309169 - L1MA10 LINE L1 0 6334 6316 6406 218 56 26 chrX 42290761 42292039 -120307891 - L1ME2 LINE L1 -9 6089 4851 2864 181 11 40 chrX 42292039 42292613 -120307317 - MER74A LTR ERVL 0 558 2 6406 218 56 26 chrX 42292613 42294039 -120305891 - L1ME2 LINE L1 -1247 4851 3307 610 212 208 5 chrX 42294031 42294243 -120305687 - L1ME2 LINE L1 -3330 2750 2496 * 1495 210 11 16 chrX 42294261 42294632 -120305298 + L1M4 LINE L1 4625 4993 -1153 1392 296 66 24 chrX 42294752 42295390 -120304540 - L1ME2 LINE L1 -5404 666 2 1722 220 56 65 chrX 42295390 42296361 -120303569 - L1M4 LINE L1 -1817 4329 3325 1796 231 44 11 chrX 42296397 42296948 -120302982 + L1ME3 LINE L1 2405 2973 -3173 1048 68 23 0 chrX 42296948 42297081 -120302849 + AluSx SINE Alu 1 136 -176 13305 17 0 0 chrX 42297081 42299398 -120300532 + L1PA4 LINE L1 3837 6152 -3 1342 117 0 0 chrX 42299423 42299611 -120300319 + AluSx SINE Alu 121 308 -4 2153 93 4 4 chrX 42300727 42301007 -120298923 + AluSx SINE Alu 19 298 -14 1062 284 35 15 chrX 42301757 42302211 -120297719 + L1ME3 LINE L1 3172 3634 -2512 3226 199 57 52 chrX 42302218 42303216 -120296714 + L1ME3 LINE L1 5136 6126 -36 294 156 31 0 chrX 42303233 42303297 -120296633 + L1ME3 LINE L1 6096 6161 -1 269 313 0 20 chrX 42303370 42303469 -120296461 - L1ME LINE L1 -631 5535 5439 207 0 0 0 chrX 42303677 42303700 -120296230 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 376 136 0 0 chrX 42303706 42303772 -120296158 - L1 LINE L1 -2130 4016 3951 5163 28 3 0 chrX 42303784 42304387 -120295543 - L1PA3 LINE L1 0 6155 5551 2429 20 5 0 chrX 42304387 42304816 -120295114 + L1PA3 LINE L1 5117 5547 -608 186 254 17 17 chrX 42306592 42306651 -120293279 - L2 LINE L2 0 3313 3255 467 311 95 43 chrX 42306801 42307148 -120292782 - MLT1J LTR MaLR -144 367 3 1427 180 25 25 chrX 42307427 42307710 -120292220 + AluJo SINE Alu 23 305 -7 567 288 35 12 chrX 42308351 42308521 -120291409 + MIR SINE MIR 34 207 -55 357 260 0 0 chrX 42308553 42308630 -120291300 + Tigger3(Golem) DNA MER2_type 66 142 -2887 * 1633 144 0 19 chrX 42308627 42308890 -120291040 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 733 283 85 36 chrX 42311556 42312001 -120287929 + MLT1H LTR MaLR 81 547 -2 227 243 27 27 chrX 42312193 42312267 -120287663 - MER9 LTR ERVK -208 303 230 239 283 30 30 chrX 42312281 42312380 -120287550 + MLT-int LTR MaLR 464 562 -1173 532 254 72 108 chrX 42313004 42313366 -120286564 + MLT1H-int LTR MaLR 1023 1371 0 2146 238 85 33 chrX 42313412 42313665 -120286265 - L1MCc LINE L1 -4889 1534 1296 1739 177 28 11 chrX 42313665 42314021 -120285909 - MLT1A1 LTR MaLR 0 365 4 2146 238 85 33 chrX 42314021 42314639 -120285291 - L1MCc LINE L1 -5127 1296 808 1272 272 117 21 chrX 42314744 42315274 -120284656 - L1MCc LINE L1 -5824 599 19 701 227 64 81 chrX 42315313 42315652 -120284278 + MLT1H LTR MaLR 54 403 -192 1222 219 172 79 chrX 42315673 42316167 -120283763 + MLT1F LTR MaLR 3 542 0 276 214 94 51 chrX 42316191 42316308 -120283622 + MLT1H LTR MaLR 428 549 0 228 250 36 79 chrX 42316536 42316676 -120283254 - L1ME LINE L1 -284 5837 5704 581 210 56 31 chrX 42316698 42316860 -120283070 + MIR SINE MIR 9 174 -88 1698 207 65 43 chrX 42316871 42317316 -120282614 - MLT1C LTR MaLR -2 465 11 320 290 98 42 chrX 42317563 42317777 -120282153 - L2 LINE L2 -1216 2098 1873 2253 229 110 4 chrX 42317924 42318404 -120281526 + MLT2E LTR ERVL 83 613 -15 649 273 148 9 chrX 42318409 42318754 -120281176 - HAL1b LINE L1 -854 494 102 315 262 158 11 chrX 42319137 42319320 -120280610 - L1MC4 LINE L1 -143 7899 7690 7949 219 44 44 chrX 42319320 42321025 -120278905 - L1ME1 LINE L1 -4 6162 4459 2318 60 3 0 chrX 42321025 42321310 -120278620 + AluY SINE Alu 2 287 -24 7949 219 44 44 chrX 42321310 42322638 -120277292 - L1ME1 LINE L1 -1707 4459 3129 2423 99 0 0 chrX 42322638 42322950 -120276980 + AluSx SINE Alu 1 312 0 7949 219 44 44 chrX 42322950 42323495 -120276435 - L1ME1 LINE L1 -3037 3129 2586 643 106 43 11 chrX 42323500 42323594 -120276336 - Tigger7 DNA MER2_type 0 2487 2391 1586 193 4 0 chrX 42323596 42323860 -120276070 - Tigger7 DNA MER2_type -468 265 1 853 230 133 0 chrX 42323860 42324160 -120275770 - L1ME1 LINE L1 -3565 2581 2242 689 205 97 5 chrX 42324143 42324328 -120275602 - L1MD3 LINE L1 -12 7983 7782 * 2334 197 127 11 chrX 42324328 42324823 -120275107 - MER77 LTR ERV1 -4 601 22 3124 185 134 132 chrX 42324861 42325229 -120274701 - L1MD3 LINE L1 -220 7775 7409 608 198 33 0 chrX 42325229 42325350 -120274580 - MLT1F1 LTR MaLR -442 125 1 3124 185 134 132 chrX 42325350 42326032 -120273898 - L1MD3 LINE L1 -586 7409 6599 2306 97 0 0 chrX 42326032 42326324 -120273606 + AluSx SINE Alu 1 293 -14 210 105 0 0 chrX 42326324 42326362 -120273568 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 3124 185 134 132 chrX 42326367 42326473 -120273457 - L1MD3 LINE L1 -1396 6599 6495 4244 235 22 31 chrX 42326475 42326807 -120273123 - L1M4 LINE L1 -1287 4859 4525 2948 12 0 0 chrX 42326807 42327139 -120272791 - L1PA4 LINE L1 -11 6144 5813 4244 235 22 31 chrX 42327139 42327176 -120272754 - L1M4 LINE L1 -1621 4525 4489 1554 88 31 18 chrX 42327176 42327402 -120272528 + MER30 DNA MER1_type 1 229 -1 4244 235 22 31 chrX 42327402 42328317 -120271613 - L1M4 LINE L1 -1657 4489 3586 1007 141 6 12 chrX 42328324 42328487 -120271443 + L1MB5 LINE L1 5494 5655 -525 1318 134 10 10 chrX 42328489 42328698 -120271232 - MER47B DNA MER2_type 0 418 210 6220 166 22 9 chrX 42328699 42329815 -120270115 + LTR19B-int LTR ERV1 3464 4594 -421 6020 86 22 20 chrX 42329809 42330673 -120269257 + LTR19B-int LTR ERV1 4718 5583 -3 * 3155 93 83 63 chrX 42330676 42331245 -120268685 + LTR19B LTR ERV1 1 580 0 484 216 108 3 chrX 42331245 42331393 -120268537 - MER47B DNA MER2_type -207 211 1 2498 166 34 14 chrX 42331394 42331894 -120268036 + L1MB5 LINE L1 5657 6166 -8 2363 164 42 15 chrX 42331444 42331900 -120268030 + L1MB5 LINE L1 5707 6174 0 1434 186 163 23 chrX 42331896 42332149 -120267781 + L1MC4a LINE L1 4992 5208 -956 * 1709 164 18 0 chrX 42332149 42332430 -120267500 + AluJo SINE Alu 4 289 -23 1434 186 163 23 chrX 42332430 42332848 -120267082 + L1MC4a LINE L1 5208 5759 -405 6505 197 80 30 chrX 42332848 42333006 -120266924 + L1MC4a LINE L1 6053 6202 -1606 2244 104 17 0 chrX 42333006 42333304 -120266626 + AluSx SINE Alu 1 303 -9 6505 197 80 30 chrX 42333304 42333617 -120266313 + L1MC4a LINE L1 6202 6498 -1310 201 39 0 0 chrX 42333617 42333643 -120266287 + (GA)n Simple_repeat Simple_repeat 1 26 0 6505 197 80 30 chrX 42333643 42334022 -120265908 + L1MC4a LINE L1 6498 6857 -951 207 69 0 0 chrX 42334022 42334051 -120265879 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6505 197 80 30 chrX 42334051 42334455 -120265475 + L1MC4a LINE L1 6857 7239 -569 2447 86 0 0 chrX 42334455 42334758 -120265172 + AluSq SINE Alu 1 303 -10 6505 197 80 30 chrX 42334758 42335143 -120264787 + L1MC4a LINE L1 7239 7806 -2 690 148 6 159 chrX 42335182 42335364 -120264566 - L1ME LINE L1 -526 5640 5487 1985 231 31 61 chrX 42335377 42335917 -120264013 + MLT1F1 LTR MaLR 1 549 -18 690 272 34 38 chrX 42335919 42336154 -120263776 + L1MC5 LINE L1 5426 5659 -2149 6714 135 28 5 chrX 42336169 42337291 -120262639 + L1MC1 LINE L1 5175 6333 0 455 211 234 28 chrX 42337287 42337505 -120262425 + L1MC5 LINE L1 5673 5935 -1873 * 273 214 36 0 chrX 42337506 42337590 -120262340 + (TA)n Simple_repeat Simple_repeat 2 88 0 3014 82 3 3 chrX 42338896 42339260 -120260670 + THE1B LTR MaLR 1 364 0 2099 209 110 71 chrX 42339549 42340176 -120259754 + L1MC5 LINE L1 6558 7242 -719 1725 154 7 40 chrX 42340176 42340364 -120259566 + AluJo SINE Alu 1 177 -135 2508 60 3 3 chrX 42340364 42340664 -120259266 + AluY SINE Alu 1 300 -11 1725 154 7 40 chrX 42340664 42340774 -120259156 + AluJo SINE Alu 177 289 -23 2099 209 110 71 chrX 42340774 42341098 -120258832 + L1MC5 LINE L1 7242 7552 -409 656 247 49 0 chrX 42341098 42341289 -120258641 + MLT1E LTR MaLR 1 212 -442 * 3218 98 60 29 chrX 42341286 42341835 -120258095 - Tigger3(Golem) DNA MER2_type -186 2843 2278 708 160 19 0 chrX 42341826 42341932 -120257998 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 10719 206 40 42 chrX 42341932 42343218 -120256712 + L1M2 LINE L1 2578 3866 -3699 1677 156 140 55 chrX 42343218 42343261 -120256669 + MSTD LTR MaLR 1 39 -357 1820 148 41 0 chrX 42343261 42343619 -120256311 + AluJb SINE Alu 1 369 0 1677 156 140 55 chrX 42343619 42343939 -120255991 + MSTD LTR MaLR 39 396 0 10719 206 40 42 chrX 42343939 42346213 -120253717 + L1M2 LINE L1 3866 6142 -1423 783 148 0 8 chrX 42346216 42346338 -120253592 - FLAM_A SINE Alu -2 140 20 3127 135 76 16 chrX 42346338 42347067 -120252863 + L1M2 LINE L1 6361 7156 -575 1114 284 16 70 chrX 42347143 42347632 -120252298 + MER110-int LTR ERV1 3310 3772 -875 2489 64 3 0 chrX 42347634 42347930 -120252000 + AluSq SINE Alu 1 297 -16 849 151 0 0 chrX 42348659 42348778 -120251152 + FLAM_C SINE Alu 1 119 -14 31 0 0 0 chrX 42348781 42348812 -120251118 + AT_rich Low_complexity Low_complexity 1 31 0 256 365 9 9 chrX 42349977 42350245 -120249685 - HERVL74 LTR ERVL -813 2743 2316 1150 253 100 38 chrX 42351742 42352221 -120247709 + MLT2B1 LTR ERVL 4 512 -8 1653 149 0 84 chrX 42354065 42354408 -120245522 + AluJo SINE Alu 1 317 0 1932 185 85 41 chrX 42354667 42355175 -120244755 - LTR55 LTR ERV -18 530 1 694 245 83 9 chrX 42355179 42355395 -120244535 - L1M4 LINE L1 -1158 4988 4757 * 1478 221 38 55 chrX 42355388 42355918 -120244012 - L1M4 LINE L1 -1644 4502 3982 4444 134 156 24 chrX 42355923 42356919 -120243011 - MER11B LTR ERVK -4 1232 1 393 0 0 0 chrX 42356941 42356988 -120242942 + L1PA3 LINE L1 6109 6155 0 316 280 23 38 chrX 42357003 42357135 -120242795 - HAL1 LINE L1 -2375 132 3 25 51 0 0 chrX 42357514 42357553 -120242377 + AT_rich Low_complexity Low_complexity 1 39 0 272 274 24 16 chrX 42357820 42357944 -120241986 - L1M4 LINE L1 -3667 2479 2355 1901 162 3 3 chrX 42357979 42358269 -120241661 - AluJb SINE Alu -22 290 1 701 174 0 87 chrX 42358365 42358514 -120241416 + MLT1A1 LTR MaLR 14 149 -225 2624 148 14 37 chrX 42358514 42358708 -120241222 + MSTB LTR MaLR 1 198 -228 1258 134 10 15 chrX 42358708 42358910 -120241020 + L1PB3 LINE L1 5954 6154 0 2624 148 14 37 chrX 42358910 42359149 -120240781 + MSTB LTR MaLR 198 424 -2 1891 153 2 99 chrX 42359151 42359564 -120240366 + MSTB-int LTR MaLR 3 375 -1205 1484 171 63 22 chrX 42359642 42360005 -120239925 + SVA Other Other 436 813 -573 189 0 0 0 chrX 42360107 42360128 -120239802 + (A)n Simple_repeat Simple_repeat 1 21 0 745 89 0 0 chrX 42360200 42360290 -120239640 - AluSg/x SINE Alu -14 296 207 7165 168 45 17 chrX 42360292 42360420 -120239510 + MSTB-int LTR MaLR 361 484 -1167 2393 103 0 0 chrX 42360420 42360731 -120239199 + AluSx SINE Alu 1 311 -1 7165 168 45 17 chrX 42360731 42361857 -120238073 + MSTB-int LTR MaLR 484 1651 0 2106 188 115 3 chrX 42361857 42362240 -120237690 + MSTB LTR MaLR 1 426 0 994 209 49 18 chrX 42362240 42362465 -120237465 + MLT1A1 LTR MaLR 134 365 0 255 217 0 0 chrX 42362523 42362583 -120237347 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 284 279 29 0 chrX 42362690 42362794 -120237136 - L1M4 LINE L1 -3796 2350 2244 2573 103 138 5 chrX 42363767 42364145 -120235785 - MSTA LTR MaLR 0 428 1 1166 285 73 9 chrX 42364150 42364603 -120235327 - L1M4 LINE L1 -1780 4366 3885 297 244 183 5 chrX 42364665 42364862 -120235068 - L1M4 LINE L1 -2745 3401 3170 269 208 52 13 chrX 42365508 42365585 -120234345 - L1MC4 LINE L1 -1349 6693 6614 283 315 0 0 chrX 42365588 42365677 -120234253 - L1MC4 LINE L1 -1340 6702 6614 253 236 45 45 chrX 42365665 42365754 -120234176 + L1MC4 LINE L1 6614 6702 -1340 * 249 279 47 0 chrX 42365689 42365775 -120234155 - L1MC4 LINE L1 -1339 6703 6614 * 233 175 32 48 chrX 42365734 42365797 -120234133 + L1MC4 LINE L1 2006 2067 -4359 * 270 213 35 42 chrX 42365827 42365946 -120233984 + L1MC4 LINE L1 1995 6983 -1339 229 318 23 0 chrX 42365915 42366003 -120233927 + L1MC4 LINE L1 6894 6983 -1339 * 222 214 0 0 chrX 42366003 42366045 -120233885 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 2058 135 30 0 chrX 42366086 42366382 -120233548 - AluSx SINE Alu -7 305 1 2596 127 70 5 chrX 42366900 42367302 -120232628 - MSTA LTR MaLR 0 428 1 771 284 117 35 chrX 42369117 42369603 -120230327 - L1MC4a LINE L1 -1714 6094 5569 2027 122 3 14 chrX 42372249 42372543 -120227387 - AluJo SINE Alu -21 291 1 761 155 136 0 chrX 42373048 42373203 -120226727 + MER104 DNA MER2_type 5 180 0 229 250 80 10 chrX 42373277 42373377 -120226553 - L1MC4 LINE L1 0 8042 7936 259 278 9 70 chrX 42373452 42373567 -120226363 + MER5B DNA MER1_type 1 108 -70 476 296 132 5 chrX 42373574 42373794 -120226136 + MIR SINE MIR 2 249 -13 198 143 0 0 chrX 42373798 42373833 -120226097 + (CTA)n Simple_repeat Simple_repeat 1 35 0 386 20 20 0 chrX 42374030 42374081 -120225849 + (TG)n Simple_repeat Simple_repeat 2 53 0 3754 120 21 7 chrX 42374201 42374769 -120225161 + L1MA6 LINE L1 5725 6300 0 279 254 160 28 chrX 42374802 42374983 -120224947 + L1MC4a LINE L1 5936 6140 -1668 1616 193 110 64 chrX 42375233 42375790 -120224140 + L1MC5 LINE L1 6558 7133 -828 2352 94 0 0 chrX 42375793 42376090 -120223840 + AluY SINE Alu 1 297 -14 3429 145 19 15 chrX 42376090 42376675 -120223255 + L1MB7 LINE L1 5598 6184 0 1814 281 82 9 chrX 42377776 42378774 -120221156 + L1ME3A LINE L1 4755 5831 -339 2357 199 218 10 chrX 42378808 42379583 -120220347 + L1ME1 LINE L1 5047 5966 -200 673 243 72 64 chrX 42379608 42379862 -120220068 + MER77 LTR ERV1 332 656 -22 6962 99 0 1 chrX 42379862 42380767 -120219163 + HERVL-A2 LTR ERVL 4751 5654 0 2101 160 52 35 chrX 42380767 42381306 -120218624 + MLT2A2 LTR ERVL 1 554 0 1850 229 133 6 chrX 42381597 42382108 -120217822 + L1MC4 LINE L1 6342 6917 -1125 2249 148 24 26 chrX 42382158 42382210 -120217720 + MSTB LTR MaLR 1 52 -374 2268 109 0 0 chrX 42382210 42382503 -120217427 + AluSx SINE Alu 1 293 -19 2249 148 24 26 chrX 42382503 42382828 -120217102 + MSTB LTR MaLR 52 377 -49 2489 199 82 31 chrX 42382838 42383321 -120216609 + L1MC4 LINE L1 6902 7359 -683 2053 132 3 0 chrX 42383321 42383624 -120216306 + AluSx SINE Alu 1 304 -8 2489 199 82 31 chrX 42383624 42383922 -120216008 + L1MC4 LINE L1 7359 7830 -212 982 182 132 41 chrX 42383922 42384142 -120215788 + MER76 LTR ERV 1 240 -448 391 261 8 23 chrX 42384668 42384798 -120215132 + L1MC4 LINE L1 7891 8018 -24 * 486 279 119 56 chrX 42384796 42385190 -120214740 + L1ME LINE L1 5364 5782 -339 1929 168 33 55 chrX 42385208 42385607 -120214323 + MLT1B LTR MaLR 1 390 0 2311 238 29 37 chrX 42385768 42386394 -120213536 + L1MDb LINE L1 141 761 -5782 5017 163 44 4 chrX 42386396 42387218 -120212712 - MER54A LTR ERVL 0 901 47 2021 219 86 34 chrX 42387192 42387749 -120212181 + MER21B LTR ERV1 142 727 -136 * 225 108 0 27 chrX 42387729 42387766 -120212164 - MLT1B LTR MaLR -354 36 1 * 3052 181 79 59 chrX 42387770 42388653 -120211277 + L1MDb LINE L1 1169 2069 -4471 2122 115 0 0 chrX 42388819 42389115 -120210815 - AluSx SINE Alu -16 296 1 2279 77 0 10 chrX 42389226 42389525 -120210405 + AluSc SINE Alu 1 296 -13 3923 220 54 45 chrX 42389525 42390793 -120209137 + L1MD1 LINE L1 1302 2557 -3983 1652 169 48 65 chrX 42390793 42391190 -120208740 + MLT1B LTR MaLR 1 390 0 3923 220 54 45 chrX 42391190 42391221 -120208709 + L1MD1 LINE L1 2557 2586 -3954 1881 128 31 0 chrX 42391221 42391509 -120208421 + AluJb SINE Alu 1 297 -15 3923 220 54 45 chrX 42391509 42391687 -120208243 + L1MD1 LINE L1 2586 2761 -3779 2044 116 3 0 chrX 42391687 42391979 -120207951 + AluSx SINE Alu 1 293 -19 3923 220 54 45 chrX 42391979 42392245 -120207685 + L1MD1 LINE L1 2761 3079 -3461 1293 101 0 21 chrX 42392245 42392433 -120207497 - AluSg/x SINE Alu 0 312 129 1221 225 35 19 chrX 42392434 42392750 -120207180 + L1MD1 LINE L1 3073 3393 -3147 2191 93 13 7 chrX 42392751 42393052 -120206878 + AluSx SINE Alu 1 303 -9 3805 145 25 22 chrX 42393054 42393273 -120206657 + L1MA5 LINE L1 5613 5830 -470 1941 111 59 0 chrX 42393273 42393561 -120206369 + AluSx SINE Alu 1 305 -7 3805 145 25 22 chrX 42393561 42394025 -120205905 + L1MA5 LINE L1 5830 6298 -2 2226 96 0 0 chrX 42394028 42394319 -120205611 + AluSx SINE Alu 1 291 -21 21 0 0 0 chrX 42394326 42394347 -120205583 + AT_rich Low_complexity Low_complexity 1 21 0 4510 185 60 18 chrX 42394358 42394454 -120205476 + L1MD1 LINE L1 5295 5385 -1251 2278 85 0 0 chrX 42394454 42394748 -120205182 + AluSx SINE Alu 1 294 -18 4510 185 60 18 chrX 42394748 42395936 -120203994 + L1MD1 LINE L1 5385 6627 -9 557 250 72 55 chrX 42395920 42396156 -120203774 + L1ME1 LINE L1 5884 6123 -43 * 2123 107 7 3 chrX 42398961 42399271 -120200659 + AluSx SINE Alu 1 311 -1 655 224 133 20 chrX 42399901 42400097 -120199833 + MLT1J LTR MaLR 286 503 -8 259 91 0 0 chrX 42401135 42401168 -120198762 - Alu SINE Alu -46 256 224 621 72 0 24 chrX 42401721 42401804 -120198126 + MSTD LTR MaLR 1 81 -315 257 65 0 0 chrX 42401804 42401835 -120198095 + MSTD LTR MaLR 45 75 -321 522 320 11 0 chrX 42402278 42402453 -120197477 + (CCA)n Simple_repeat Simple_repeat 3 179 0 1016 202 14 16 chrX 42404013 42404249 -120195681 + MIR SINE MIR 5 232 -30 2215 79 0 17 chrX 42404330 42404622 -120195308 + AluSg SINE Alu 5 291 -19 2242 83 37 0 chrX 42405234 42405573 -120194357 - AluSx SINE Alu 0 350 1 216 0 0 0 chrX 42406074 42406098 -120193832 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1819 143 3 37 chrX 42406190 42406511 -120193419 + AluSx SINE Alu 1 310 -2 2523 45 0 3 chrX 42406805 42407115 -120192815 + AluY SINE Alu 1 309 -2 225 0 0 0 chrX 42407187 42407212 -120192718 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 1927 148 3 0 chrX 42407214 42407518 -120192412 - AluSx SINE Alu -7 305 1 23 68 0 0 chrX 42408060 42408104 -120191826 + AT_rich Low_complexity Low_complexity 1 44 0 2228 194 37 177 chrX 42408151 42408451 -120191479 + L1ME3A LINE L1 5222 5562 -608 2232 94 7 0 chrX 42408451 42408758 -120191172 - AluSq SINE Alu -4 309 1 2228 194 37 177 chrX 42408758 42409526 -120190404 + L1ME3A LINE L1 5562 6164 -6 2282 97 3 0 chrX 42409588 42409899 -120190031 + AluSx SINE Alu 1 312 0 2132 110 3 10 chrX 42409908 42410216 -120189714 + AluSq SINE Alu 1 306 -7 397 294 101 20 chrX 42410223 42410382 -120189548 + L1MC/D LINE L1 5296 5441 -680 814 43 0 17 chrX 42410382 42410499 -120189431 + (TCTCCC)n Simple_repeat Simple_repeat 1 115 0 6015 74 13 15 chrX 42410499 42412032 -120187898 + SVA Other Other 52 1386 0 397 294 101 20 chrX 42412032 42412189 -120187741 + L1MC/D LINE L1 5440 5645 -476 4258 94 9 105 chrX 42412225 42412572 -120187358 + L1PA13 LINE L1 5484 5722 -441 840 150 0 0 chrX 42412572 42412692 -120187238 + FLAM_C SINE Alu 1 120 -13 4258 94 9 105 chrX 42412692 42413096 -120186834 + L1PA13 LINE L1 5722 6163 0 230 265 206 7 chrX 42413108 42413244 -120186686 + L1MC/D LINE L1 5697 5859 -1949 712 305 10 0 chrX 42413271 42413474 -120186456 + MIR SINE MIR 58 262 0 195 242 0 0 chrX 42413483 42413545 -120186385 + (TTA)n Simple_repeat Simple_repeat 2 63 0 597 185 34 112 chrX 42414507 42414685 -120185245 - MIR SINE MIR 0 262 99 1539 135 12 11 chrX 42414950 42415222 -120184708 - L1MA5 LINE L1 -1 6290 6025 1549 179 13 99 chrX 42416335 42416709 -120183221 + MLT1A2 LTR MaLR 24 365 -9 355 187 0 110 chrX 42416723 42416814 -120183116 - MER92B LTR ERV1 -535 101 21 5265 168 34 34 chrX 42417022 42418708 -120181222 - L1MB5 LINE L1 0 6174 4484 2158 104 7 10 chrX 42418708 42419016 -120180914 - AluSx SINE Alu -5 307 1 5265 168 34 34 chrX 42419016 42419425 -120180505 - L1MB5 LINE L1 -1689 4485 4077 1989 196 48 53 chrX 42419497 42420043 -120179887 + LTR55 LTR ERV 1 543 -5 2309 35 0 11 chrX 42421275 42421557 -120178373 + AluY SINE Alu 1 279 -32 195 42 0 0 chrX 42421557 42421581 -120178349 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 997 260 84 54 chrX 42422271 42422771 -120177159 - MLT2B1 LTR ERVL -2 518 4 291 258 58 39 chrX 42423575 42423730 -120176200 + HERVL74 LTR ERVL 1805 1962 -3723 2251 78 10 3 chrX 42424028 42424334 -120175596 + AluSq SINE Alu 1 308 -5 323 311 44 40 chrX 42424550 42424802 -120175128 + HERVL74 LTR ERVL 2316 2695 -861 678 156 0 106 chrX 42425991 42426013 -120173917 - FLAM_C SINE Alu -172 130 107 2097 114 0 0 chrX 42426013 42426310 -120173620 + AluSx SINE Alu 1 297 -15 678 156 0 106 chrX 42426310 42426428 -120173502 - FLAM_C SINE Alu -195 107 5 1618 128 54 27 chrX 42428057 42428353 -120171577 + AluJo SINE Alu 1 304 -8 1960 122 14 0 chrX 42428483 42428771 -120171159 + AluSx SINE Alu 1 292 -20 269 289 0 0 chrX 42429942 42430018 -120169912 + MER66-int LTR ERV1 6115 6190 -486 1202 198 39 144 chrX 42430025 42430484 -120169446 - MER92A LTR ERV1 0 412 2 1648 127 74 18 chrX 42430776 42430914 -120169016 + AluJb SINE Alu 1 130 -182 1960 127 0 3 chrX 42430914 42431234 -120168696 + AluSx SINE Alu 1 319 0 1648 127 74 18 chrX 42431234 42431377 -120168553 + AluJb SINE Alu 130 299 -13 3508 59 5 0 chrX 42432109 42432550 -120167380 + L1PA8 LINE L1 5725 6167 -5 7709 26 5 0 chrX 42433206 42434608 -120165322 - L1PA3 LINE L1 -2 6153 4746 262 310 36 60 chrX 42434642 42434974 -120164956 - MER110-int LTR ERV1 -1872 2775 2452 1620 140 117 15 chrX 42435028 42435293 -120164637 - AluJo SINE Alu -16 296 5 1161 225 64 50 chrX 42435512 42435706 -120164224 - MER110-int LTR ERV1 -1963 2973 2783 2247 106 0 7 chrX 42435706 42436009 -120163921 + AluSx SINE Alu 1 301 -11 1161 225 64 50 chrX 42436009 42436236 -120163694 - MER110-int LTR ERV1 -2153 2783 2546 3669 200 34 5 chrX 42436243 42436914 -120163016 - MER21B LTR ERV1 -130 733 43 413 230 0 0 chrX 42436914 42436988 -120162942 - MER21B LTR ERV1 -771 92 19 654 154 146 0 chrX 42437069 42437179 -120162751 + FLAM_C SINE Alu 3 128 -5 186 184 0 0 chrX 42437256 42437294 -120162636 + MIR SINE MIR 109 146 -62 944 202 76 42 chrX 42437474 42437712 -120162218 + L1ME2 LINE L1 5909 6154 -10 664 199 77 33 chrX 42437957 42438138 -120161792 - MER110-int LTR ERV1 -2745 2191 2003 5697 132 24 57 chrX 42438231 42438363 -120161567 - MER110-int LTR ERV1 -3492 1444 1309 2238 100 7 0 chrX 42438363 42438654 -120161276 - AluSq SINE Alu -19 294 2 5697 132 24 57 chrX 42438654 42439081 -120160849 - MER110-int LTR ERV1 -3627 1309 934 2584 47 0 28 chrX 42439081 42439400 -120160530 - AluY SINE Alu 0 311 2 5697 132 24 57 chrX 42439400 42439886 -120160044 - MER110-int LTR ERV1 -4002 934 433 768 133 11 155 chrX 42440501 42440740 -120159190 - MER92B LTR ERV1 -2 634 228 243 229 0 0 chrX 42440766 42440814 -120159116 - MER92A LTR ERV1 -363 49 2 658 113 99 119 chrX 42441114 42441265 -120158665 - FRAM SINE Alu -18 148 1 265 111 0 0 chrX 42441283 42441319 -120158611 + LTR55 LTR ERV 4 39 -509 285 79 0 0 chrX 42441357 42441395 -120158535 - LTR14 LTR ERVK -508 40 3 1965 186 59 40 chrX 42441401 42441496 -120158434 + LTR55 LTR ERV 32 124 -424 2277 103 3 0 chrX 42441496 42441796 -120158134 - AluSc SINE Alu -8 301 1 1965 186 59 40 chrX 42441796 42442205 -120157725 + LTR55 LTR ERV 124 546 -2 2478 176 2 61 chrX 42442207 42442734 -120157196 + MER77-int LTR ERV1 3641 4136 -55 2186 102 3 7 chrX 42442789 42443082 -120156848 + AluSx SINE Alu 1 292 -20 534 96 0 36 chrX 42443310 42443393 -120156537 - MADE1 DNA Mariner 0 80 1 835 218 0 6 chrX 42444545 42444710 -120155220 + AluSg/x SINE Alu 131 294 -18 3298 184 10 42 chrX 42444935 42445560 -120154370 + MER77 LTR ERV1 1 605 0 1722 105 0 4 chrX 42445685 42445913 -120154017 + AluSg/x SINE Alu 74 300 -10 2044 116 68 3 chrX 42446060 42446352 -120153578 + AluSx SINE Alu 1 311 -1 301 253 23 11 chrX 42447251 42447338 -120152592 + LTR2 LTR ERV1 41 128 -321 899 191 27 21 chrX 42447361 42447549 -120152381 + LTR2 LTR ERV1 261 449 0 2621 91 39 0 chrX 42447724 42448085 -120151845 - THE1C LTR MaLR 0 375 1 241 154 19 19 chrX 42448168 42448220 -120151710 - THE1B LTR MaLR -51 313 262 806 175 0 7 chrX 42448233 42448370 -120151560 + MLT1B LTR MaLR 255 390 0 1907 160 28 0 chrX 42448397 42448684 -120151246 - AluJb SINE Alu -17 295 1 397 276 134 46 chrX 42448696 42448935 -120150995 - L1MEd LINE L1 -5306 813 554 448 233 108 0 chrX 42449004 42449133 -120150797 + L2 LINE L2 2920 3062 -251 204 279 27 99 chrX 42449280 42449330 -120150600 + L2 LINE L2 3210 3249 -64 2342 93 0 3 chrX 42449330 42449640 -120150290 + AluSc SINE Alu 1 309 0 204 279 27 99 chrX 42449640 42449700 -120150230 + L2 LINE L2 3249 3312 -1 2314 73 0 11 chrX 42449712 42450028 -120149902 + AluY SINE Alu 1 313 0 2052 174 15 8 chrX 42450161 42450521 -120149409 - MLT1A1 LTR MaLR 0 365 2 352 289 75 66 chrX 42450585 42450695 -120149235 + L1MC4a LINE L1 290 398 -5721 1114 228 161 20 chrX 42450695 42451042 -120148888 + MSTD LTR MaLR 1 396 0 352 289 75 66 chrX 42451042 42451159 -120148771 + L1MC4a LINE L1 398 519 -5600 323 291 85 16 chrX 42451471 42451660 -120148270 + L1MC4a LINE L1 2964 3165 -2964 201 257 0 14 chrX 42451883 42451938 -120147992 + (TA)n Simple_repeat Simple_repeat 1 56 -17 2263 112 0 0 chrX 42451938 42452232 -120147698 + AluSx SINE Alu 1 294 -18 201 257 0 14 chrX 42452232 42452250 -120147680 + (TA)n Simple_repeat Simple_repeat 56 73 0 387 0 0 0 chrX 42454399 42454442 -120145488 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 244 0 23 chrX 42454782 42454868 -120145062 + L1 LINE L1 4951 5034 -1112 1073 247 80 77 chrX 42455235 42455728 -120144202 + L1MC4a LINE L1 4778 4865 -1264 2115 111 77 17 chrX 42455728 42456081 -120143849 + THE1C LTR MaLR 1 374 -1 1073 247 80 77 chrX 42456081 42456605 -120143325 + L1MC4a LINE L1 4865 5386 -743 2170 119 0 0 chrX 42456606 42456901 -120143029 + AluSx SINE Alu 1 295 -17 1310 153 38 5 chrX 42456903 42457112 -120142818 + AluJb SINE Alu 84 299 -13 345 162 0 0 chrX 42457114 42457182 -120142748 + GA-rich Low_complexity Low_complexity 3 70 0 247 250 0 15 chrX 42457183 42457251 -120142679 + L1MC/D LINE L1 5819 5885 -1923 534 235 0 22 chrX 42457251 42457387 -120142543 - L2 LINE L2 -1 3312 3180 324 289 75 21 chrX 42457493 42457682 -120142248 + L1ME LINE L1 5322 5516 -650 2331 90 0 0 chrX 42457762 42458051 -120141879 + AluSx SINE Alu 1 289 -23 617 204 158 36 chrX 42458200 42458396 -120141534 + MIR SINE MIR 43 262 0 1739 153 14 89 chrX 42458553 42458630 -120141300 + MER58B DNA MER1_type 10 91 -2329 1809 150 7 4 chrX 42458630 42458904 -120141026 - AluJb SINE Alu -21 291 17 1739 153 14 89 chrX 42458904 42459185 -120140745 + MER58B DNA MER1_type 91 341 0 754 246 0 0 chrX 42459185 42459376 -120140554 + L1ME LINE L1 3366 3556 -2573 1181 78 0 0 chrX 42459376 42459518 -120140412 + AluSq/x SINE Alu 1 142 -170 446 158 0 13 chrX 42459518 42459617 -120140313 + AluJb SINE Alu 210 307 0 393 153 0 0 chrX 42459617 42459689 -120140241 + GA-rich Low_complexity Low_complexity 3 74 0 1237 92 0 0 chrX 42459709 42459862 -120140068 + AluSq SINE Alu 145 297 -16 545 255 65 0 chrX 42459862 42460046 -120139884 + L1ME LINE L1 3542 3737 -2392 282 241 74 46 chrX 42460079 42460187 -120139743 + L1MC5 LINE L1 7791 7901 -60 397 326 0 0 chrX 42461191 42461326 -120138604 + L1ME LINE L1 5600 5734 -370 493 204 79 86 chrX 42461378 42461657 -120138273 + L1MC5 LINE L1 7503 7779 -182 1064 167 191 8 chrX 42461695 42461941 -120137989 + AluJo SINE Alu 1 291 -11 1705 148 11 4 chrX 42461943 42462213 -120137717 + AluSq SINE Alu 1 272 -41 852 156 16 4 chrX 42462216 42462468 -120137462 + GA-rich Low_complexity Low_complexity 1 255 0 473 189 7 95 chrX 42462472 42462506 -120137424 + L1MC5 LINE L1 7779 7814 -147 1315 191 38 55 chrX 42462506 42462852 -120137078 - MER58B DNA MER1_type -1 340 1 473 189 7 95 chrX 42462852 42462965 -120136965 + L1MC5 LINE L1 7814 7913 -48 2047 148 6 3 chrX 42463113 42463424 -120136506 + AluJb SINE Alu 1 312 0 1381 162 49 16 chrX 42463448 42463508 -120136422 + MER106B DNA MER1_type 1 58 -1001 233 29 0 29 chrX 42463508 42463543 -120136387 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1381 162 49 16 chrX 42463543 42463729 -120136201 + MER106B DNA MER1_type 58 255 -804 434 250 59 7 chrX 42463732 42463868 -120136062 - MIR SINE MIR -60 202 60 2628 48 0 3 chrX 42464004 42464316 -120135614 - AluY SINE Alu 0 311 1 493 238 56 53 chrX 42464356 42464487 -120135443 + L1ME LINE L1 5150 5279 -885 2314 99 0 7 chrX 42464487 42464791 -120135139 + AluSx SINE Alu 1 302 -10 493 238 56 53 chrX 42464791 42464942 -120134988 + L1ME LINE L1 5279 5435 -729 2004 155 3 0 chrX 42466687 42466991 -120132939 + AluSx SINE Alu 1 305 -7 868 133 0 0 chrX 42467002 42467130 -120132800 + FLAM_C SINE Alu 1 128 -5 1335 176 31 0 chrX 42467280 42467502 -120132428 + AluSx SINE Alu 2 230 -82 1243 198 84 65 chrX 42467916 42468239 -120131691 - MLT1D LTR MaLR 0 505 177 276 53 0 0 chrX 42468247 42468285 -120131645 + (GA)n Simple_repeat Simple_repeat 1 38 0 1475 165 12 8 chrX 42468286 42468431 -120131499 - AluJo SINE Alu -31 281 133 2506 78 0 0 chrX 42468431 42468737 -120131193 - AluY SINE Alu -5 306 1 1475 165 12 8 chrX 42468737 42468839 -120131091 - AluJo SINE Alu -179 133 33 257 80 60 80 chrX 42468840 42468890 -120131040 - MLT1D LTR MaLR -316 189 141 1060 134 58 6 chrX 42468890 42469061 -120130869 - MLT1D LTR MaLR -325 180 1 2251 100 0 0 chrX 42469432 42469742 -120130188 + AluSc SINE Alu 1 310 0 1978 146 11 0 chrX 42469777 42470064 -120129866 + AluJo SINE Alu 1 290 -22 2193 124 13 0 chrX 42470359 42470665 -120129265 + AluSx SINE Alu 3 312 0 1539 202 65 14 chrX 42470884 42471240 -120128690 + MLT1A2 LTR MaLR 1 374 0 829 172 0 0 chrX 42471404 42471538 -120128392 + AluJo SINE Alu 1 134 -178 24 0 0 0 chrX 42471538 42471562 -120128368 + AT_rich Low_complexity Low_complexity 1 24 0 299 282 0 0 chrX 42471603 42471674 -120128256 - MER5A DNA MER1_type -56 133 63 1744 166 63 120 chrX 42471684 42471893 -120128037 - L1MC4 LINE L1 -2 8040 7821 8605 67 4 3 chrX 42471893 42472963 -120126967 + MER11C LTR ERVK 1 1071 0 1847 177 0 3 chrX 42472969 42473279 -120126651 + AluJb SINE Alu 1 309 -3 1744 166 63 120 chrX 42473279 42473417 -120126513 - L1MC4 LINE L1 -226 7816 7672 2159 126 0 7 chrX 42473417 42473719 -120126211 + AluSq SINE Alu 1 300 -13 1744 166 63 120 chrX 42473719 42473946 -120125984 - L1MC4 LINE L1 -370 7672 7491 1076 183 26 18 chrX 42473917 42474146 -120125784 - L1MC4a LINE L1 -1217 6591 6361 * 839 150 0 21 chrX 42474146 42474286 -120125644 + FLAM_C SINE Alu 1 137 -6 1185 170 52 116 chrX 42474286 42474691 -120125239 - L1MC4a LINE L1 -1437 6371 5993 298 0 23 23 chrX 42475102 42475145 -120124785 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 1204 79 17 0 chrX 42475147 42475324 -120124606 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2154 98 7 4 chrX 42475329 42475606 -120124324 - AluSx SINE Alu -34 278 1 680 203 98 0 chrX 42475709 42475872 -120124058 + LTR47A LTR ERVL 274 452 0 553 211 0 0 chrX 42475911 42476015 -120123915 + U13 snRNA snRNA 1 104 0 265 302 9 0 chrX 42476063 42476169 -120123761 + HERVL32 LTR ERVL 81 187 -3231 1459 345 61 61 chrX 42477801 42478965 -120120965 + HERVL32 LTR ERVL 1721 2884 -2459 2338 218 79 72 chrX 42478965 42479785 -120120145 - LTR1B LTR ERV1 0 826 1 1459 345 61 61 chrX 42479785 42480680 -120119250 + HERVL32 LTR ERVL 2884 3677 -1666 1800 124 96 37 chrX 42480680 42481034 -120118896 + THE1C LTR MaLR 1 375 0 1459 345 61 61 chrX 42481034 42481441 -120118489 + HERVL32 LTR ERVL 3677 4083 -1260 2156 119 0 30 chrX 42481458 42481761 -120118169 + AluSx SINE Alu 1 294 -18 2680 136 34 0 chrX 42481781 42482194 -120117736 - MSTA LTR MaLR -1 427 1 2011 85 30 20 chrX 42482579 42482874 -120117056 + L1PA15 LINE L1 5865 6162 -3 315 302 0 87 chrX 42483573 42483633 -120116297 + PABL_B-int LTR ERV1 5633 5697 -1425 2488 93 0 0 chrX 42483633 42483945 -120115985 + AluSx SINE Alu 1 312 0 315 302 0 87 chrX 42483945 42484033 -120115897 + PABL_B-int LTR ERV1 5697 5768 -1354 605 164 0 57 chrX 42484233 42484355 -120115575 + PABL_B-int LTR ERV1 5968 6082 -676 903 153 90 6 chrX 42484600 42484777 -120115153 + LTR47A LTR ERVL 261 452 0 1011 76 6 13 chrX 42484857 42485014 -120114916 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 1877 151 4 0 chrX 42485019 42485298 -120114632 - AluSq SINE Alu -33 280 1 1893 118 29 38 chrX 42485892 42486207 -120113723 + AluSx SINE Alu 1 312 0 237 108 0 0 chrX 42486207 42486244 -120113686 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 798 243 6 0 chrX 42487477 42487646 -120112284 - LTR65 LTR ERV1 -12 657 488 1286 163 19 0 chrX 42487733 42487948 -120111982 - MER20 DNA MER1_type 0 219 1 1762 129 0 52 chrX 42488107 42488443 -120111487 + AluSx SINE Alu 1 320 0 1886 146 3 0 chrX 42488448 42488742 -120111188 + AluSx SINE Alu 1 295 -17 1536 194 20 12 chrX 42488745 42489090 -120110840 + L1MD3 LINE L1 4382 4729 -1417 237 108 0 0 chrX 42489774 42489811 -120110119 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 1893 118 29 38 chrX 42489811 42490126 -120109804 - AluSx SINE Alu 0 312 1 1833 209 64 38 chrX 42490730 42490926 -120109004 + L1MD3 LINE L1 5130 5319 -1015 2151 92 7 0 chrX 42490926 42491221 -120108709 + AluSp SINE Alu 1 297 -16 1833 209 64 38 chrX 42491221 42491372 -120108558 + L1MD3 LINE L1 5319 5465 -869 1580 151 72 4 chrX 42491372 42491650 -120108280 + AluJb SINE Alu 1 297 -15 1833 209 64 38 chrX 42491650 42492060 -120107870 + L1MD3 LINE L1 5465 5863 -471 1891 124 13 0 chrX 42492060 42492358 -120107572 - AluSx SINE Alu -10 302 1 1833 209 64 38 chrX 42492358 42492580 -120107350 + L1MD3 LINE L1 5863 6334 0 815 129 23 0 chrX 42492654 42492786 -120107144 + AluJo SINE Alu 1 135 -177 2051 97 0 83 chrX 42492842 42493181 -120106749 - AluSx SINE Alu 0 312 2 2104 122 0 0 chrX 42493326 42493622 -120106308 - AluSx SINE Alu -16 296 1 896 151 0 0 chrX 42493747 42493886 -120106044 - FLAM_C SINE Alu -4 139 1 940 119 0 15 chrX 42494020 42494154 -120105776 - FLAM_C SINE Alu -1 132 1 271 318 106 37 chrX 42494448 42494665 -120105265 + MIR SINE MIR 15 246 -16 610 275 113 18 chrX 42494689 42494911 -120105019 - MIR SINE MIR 0 262 20 2785 91 3 3 chrX 42494913 42495277 -120104653 - THE1B LTR MaLR 0 364 1 670 221 45 50 chrX 42495390 42495548 -120104382 + MLT1D LTR MaLR 1 157 -348 2462 181 36 61 chrX 42495548 42496102 -120103828 - MLT2B3 LTR ERVL 0 554 15 993 174 45 147 chrX 42496140 42496271 -120103659 + MLT1D LTR MaLR 149 292 -213 2546 122 57 10 chrX 42496271 42496674 -120103256 + MSTB LTR MaLR 1 422 -4 993 174 45 147 chrX 42496674 42496757 -120103173 + MLT1D LTR MaLR 292 382 -123 1847 155 0 7 chrX 42496757 42497061 -120102869 + AluJb SINE Alu 11 312 0 993 174 45 147 chrX 42497061 42497241 -120102689 + MLT1D LTR MaLR 382 504 -1 2331 232 84 105 chrX 42497243 42497547 -120102383 + MLT1D-int LTR MaLR 2 311 -1060 2129 82 0 7 chrX 42497547 42497829 -120102101 + AluSp SINE Alu 1 280 -33 2331 232 84 105 chrX 42497829 42498924 -120101006 + MLT1D-int LTR MaLR 311 1371 0 780 218 32 50 chrX 42498924 42499019 -120100911 + MLT1D LTR MaLR 1 96 -409 1892 96 92 0 chrX 42499019 42499291 -120100639 + AluSg1 SINE Alu 1 297 -12 780 218 32 50 chrX 42499291 42499415 -120100515 + MLT1D LTR MaLR 96 216 -289 1291 217 66 30 chrX 42499427 42499778 -120100152 + MSTD LTR MaLR 1 396 0 1223 193 16 11 chrX 42499784 42499814 -120100116 + MLT1D LTR MaLR 224 252 -253 1663 123 138 35 chrX 42499814 42500154 -120099776 - THE1C LTR MaLR 0 375 1 1223 193 16 11 chrX 42500154 42500374 -120099556 + MLT1D LTR MaLR 252 499 -6 689 163 0 47 chrX 42500497 42500626 -120099304 + FLAM_C SINE Alu 2 124 -19 26 0 0 0 chrX 42500626 42500652 -120099278 + AT_rich Low_complexity Low_complexity 1 26 0 733 301 10 5 chrX 42500658 42500851 -120099079 + MIR SINE MIR 19 212 -50 638 168 0 77 chrX 42501181 42501324 -120098606 - FLAM_C SINE Alu 0 133 2 1216 148 32 115 chrX 42501333 42501672 -120098258 - AluJo SINE Alu -1 311 1 344 158 384 62 chrX 42502342 42502488 -120097442 - AluJo SINE Alu -105 197 5 874 173 211 42 chrX 42502497 42502757 -120097173 - AluJo SINE Alu -4 308 5 893 172 195 38 chrX 42502761 42502905 -120097025 - AluJb SINE Alu 0 312 192 293 0 27 0 chrX 42502905 42502942 -120096988 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 893 172 195 38 chrX 42502942 42503064 -120096866 - AluJb SINE Alu -120 192 4 559 146 107 0 chrX 42503093 42503196 -120096734 - FLAM_A SINE Alu -16 117 4 212 0 36 0 chrX 42503203 42503231 -120096699 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1059 139 0 88 chrX 42503268 42503506 -120096424 - AluJo SINE Alu -95 217 1 1654 156 3 10 chrX 42505088 42505377 -120094553 - AluJo SINE Alu -25 287 1 208 0 0 59 chrX 42505863 42505897 -120094033 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1993 105 4 0 chrX 42505901 42506178 -120093752 - AluSq SINE Alu -35 278 1 304 115 96 0 chrX 42506980 42507032 -120092898 - L1MB7 LINE L1 -28 6156 6100 334 258 0 11 chrX 42507598 42507687 -120092243 - MIR SINE MIR -34 228 141 261 338 0 0 chrX 42507728 42507799 -120092131 + MIR SINE MIR 79 149 -113 188 286 79 0 chrX 42507848 42507911 -120092019 - MIR SINE MIR -128 134 67 2091 102 0 0 chrX 42508444 42508738 -120091192 + AluSc SINE Alu 1 294 -15 6647 54 9 60 chrX 42508784 42510523 -120089407 + SVA Other Other 13 1386 0 194 255 0 20 chrX 42511052 42511103 -120088827 + MIR SINE MIR 163 212 -50 309 292 71 18 chrX 42511493 42511606 -120088324 + MIR SINE MIR 79 197 -65 2947 114 59 13 chrX 42511708 42512163 -120087767 - Tigger1 DNA MER2_type 0 2418 1943 * 5412 102 21 93 chrX 42512156 42512980 -120086950 - Tigger1 DNA MER2_type -1377 1041 209 1492 84 14 5 chrX 42512980 42513193 -120086737 + L1MA2 LINE L1 6089 6303 -1 5412 102 21 93 chrX 42513193 42513388 -120086542 - Tigger1 DNA MER2_type -2209 209 1 218 32 32 0 chrX 42514661 42514692 -120085238 + (CA)n Simple_repeat Simple_repeat 2 33 0 417 227 6 3 chrX 42514864 42514962 -120084968 - L1ME LINE L1 -424 5697 5598 297 255 112 10 chrX 42514969 42515067 -120084863 - L2 LINE L2 -22 3291 3184 324 0 0 0 chrX 42515083 42515119 -120084811 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 904 154 20 7 chrX 42515120 42515269 -120084661 - FRAM SINE Alu -15 151 1 300 303 53 38 chrX 42515868 42516000 -120083930 - MIR SINE MIR -97 165 32 2130 99 0 0 chrX 42516800 42517094 -120082836 - AluSg SINE Alu -14 296 3 1230 224 0 0 chrX 42517114 42517368 -120082562 - AluJo SINE Alu -23 289 36 1835 153 0 0 chrX 42517368 42517656 -120082274 + AluSx SINE Alu 2 289 -23 225 94 0 0 chrX 42517661 42517693 -120082237 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 540 297 126 21 chrX 42517761 42518047 -120081883 + MER65-int LTR ERV1 4555 4870 -1 1938 109 3 7 chrX 42518081 42518374 -120081556 + AluSx SINE Alu 1 292 -20 356 292 23 15 chrX 42518605 42518735 -120081195 - L1 LINE L1 -1721 4425 4295 1717 154 13 19 chrX 42518805 42519117 -120080813 + AluSx SINE Alu 1 310 -2 2029 139 0 0 chrX 42519684 42519994 -120079936 + AluSg SINE Alu 1 310 0 1004 216 72 5 chrX 42520097 42520319 -120079611 - MER67C LTR ERV1 -282 428 192 548 167 0 56 chrX 42520321 42520429 -120079501 + AluJb SINE Alu 3 104 -208 338 218 194 24 chrX 42520439 42520563 -120079367 - MER67C LTR ERV1 -565 145 1 1792 154 3 3 chrX 42520719 42521012 -120078918 - AluSq SINE Alu -20 293 1 1078 158 15 10 chrX 42521094 42521296 -120078634 - MER65C LTR ERV1 0 461 259 2140 103 7 3 chrX 42521830 42522140 -120077790 + AluSx SINE Alu 1 311 -1 675 219 133 20 chrX 42522770 42522966 -120076964 + MLT1J LTR MaLR 286 503 -8 259 91 0 0 chrX 42524004 42524037 -120075893 - AluSc SINE Alu -45 254 222 621 72 0 24 chrX 42524590 42524673 -120075257 + MSTD LTR MaLR 1 81 -315 257 65 0 0 chrX 42524673 42524704 -120075226 + MSTD LTR MaLR 45 75 -321 522 320 11 0 chrX 42525147 42525322 -120074608 + (CCA)n Simple_repeat Simple_repeat 3 179 0 1016 202 14 16 chrX 42526882 42527118 -120072812 + MIR SINE MIR 5 232 -30 2215 79 0 17 chrX 42527199 42527491 -120072439 + AluSg SINE Alu 5 291 -19 2250 83 36 0 chrX 42528103 42528443 -120071487 - AluSx SINE Alu 0 351 1 216 0 0 0 chrX 42528944 42528968 -120070962 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2350 66 0 3 chrX 42529060 42529361 -120070569 + AluY SINE Alu 1 300 -11 1904 158 3 0 chrX 42529435 42529789 -120070141 - AluSx SINE Alu 0 355 1 23 68 0 0 chrX 42530331 42530375 -120069555 + AT_rich Low_complexity Low_complexity 1 44 0 803 194 23 30 chrX 42530422 42530693 -120069237 + L1ME3A LINE L1 5222 5489 -675 2245 92 7 0 chrX 42530722 42531027 -120068903 - AluSq SINE Alu -6 307 1 2230 199 54 92 chrX 42531097 42531795 -120068135 + L1ME3A LINE L1 5493 6164 -6 2270 100 3 0 chrX 42531857 42532168 -120067762 + AluSx SINE Alu 1 312 0 2148 110 3 10 chrX 42532168 42532478 -120067452 + AluSq SINE Alu 1 308 -5 4737 75 5 11 chrX 42532618 42533261 -120066669 + SVA Other Other 748 1386 0 397 254 79 8 chrX 42533292 42533418 -120066512 + L1MC/D LINE L1 5511 5645 -476 4240 96 9 105 chrX 42533455 42533802 -120066128 + L1PA13 LINE L1 5484 5722 -441 840 150 0 0 chrX 42533802 42533922 -120066008 + FLAM_C SINE Alu 1 120 -13 4240 96 9 105 chrX 42533922 42534326 -120065604 + L1PA13 LINE L1 5722 6163 0 230 265 206 7 chrX 42534338 42534474 -120065456 + L1MC/D LINE L1 5697 5859 -1949 712 305 10 0 chrX 42534501 42534704 -120065226 + MIR SINE MIR 58 262 0 266 258 0 0 chrX 42534713 42534775 -120065155 + (TTA)n Simple_repeat Simple_repeat 2 63 0 603 185 34 112 chrX 42535742 42535920 -120064010 - MIR SINE MIR 0 262 99 511 176 44 0 chrX 42536194 42536285 -120063645 - MSTC LTR MaLR -333 95 1 803 196 36 50 chrX 42536297 42536421 -120063509 - MLT1D LTR MaLR -289 216 95 2276 101 3 3 chrX 42536421 42536718 -120063212 - AluSg SINE Alu -13 297 1 803 196 36 50 chrX 42536718 42536812 -120063118 - MLT1D LTR MaLR -410 95 1 1600 210 23 84 chrX 42536812 42537250 -120062680 - MLT1D-int LTR MaLR 0 1371 961 828 226 67 108 chrX 42537258 42537572 -120062358 - MLT1D-int LTR MaLR -574 797 497 336 313 33 42 chrX 42537630 42537844 -120062086 + MER83B-int LTR ERV1 2950 3161 -1719 2121 114 0 60 chrX 42537921 42538253 -120061677 - AluSx SINE Alu 0 312 1 1052 231 109 0 chrX 42538471 42538709 -120061221 - MER65-int LTR ERV1 -816 4055 3792 1040 147 114 107 chrX 42538709 42538906 -120061024 + MER4B LTR ERV1 1 202 -408 2092 112 0 19 chrX 42538906 42539219 -120060711 + AluSc SINE Alu 3 309 0 1040 147 114 107 chrX 42539219 42539293 -120060637 + MER4B LTR ERV1 202 274 -336 1234 187 35 38 chrX 42539431 42539782 -120060148 + MER31A LTR ERV1 2 447 -38 970 162 0 13 chrX 42539783 42539937 -120059993 - AluJ SINE Alu -16 296 145 955 147 0 0 chrX 42539987 42540130 -120059800 - AluJ SINE Alu -169 143 1 2117 131 3 0 chrX 42540262 42540553 -120059377 + AluSx SINE Alu 4 295 -17 430 285 132 29 chrX 42540556 42541063 -120058867 - L1MEd LINE L1 -940 1550 915 2122 114 3 0 chrX 42541076 42541396 -120058534 - AluSx SINE Alu 0 312 1 1079 160 0 0 chrX 42541396 42541565 -120058365 - AluSp SINE Alu -1 312 144 1947 148 7 0 chrX 42541930 42542235 -120057695 - AluJb SINE Alu -5 307 1 228 304 0 14 chrX 42542440 42542509 -120057421 - L1MEd LINE L1 -4898 1221 1154 237 132 0 0 chrX 42542514 42542552 -120057378 + (TA)n Simple_repeat Simple_repeat 1 38 0 2238 115 3 0 chrX 42542552 42542857 -120057073 - AluSx SINE Alu -6 306 1 305 333 0 26 chrX 42542860 42542974 -120056956 - HAL1 LINE L1 -1245 1262 1152 260 276 49 59 chrX 42543234 42543530 -120056400 - L1P LINE L1 -1063 5083 4780 1992 128 0 3 chrX 42543581 42543869 -120056061 + AluSx SINE Alu 2 288 -24 3729 187 73 39 chrX 42543877 42544475 -120055455 + L1MD2 LINE L1 4676 5252 -1107 1844 136 19 35 chrX 42544475 42544791 -120055139 + AluSx SINE Alu 1 311 -1 3729 187 73 39 chrX 42544791 42545290 -120054640 + L1MD2 LINE L1 5252 5834 -525 1947 147 0 20 chrX 42545290 42545590 -120054340 + AluSg SINE Alu 1 294 -16 3729 187 73 39 chrX 42545590 42545841 -120054089 + L1MD2 LINE L1 5834 6075 -284 2093 130 0 7 chrX 42545842 42546143 -120053787 - AluSx SINE Alu -13 299 1 39 50 0 0 chrX 42546176 42546236 -120053694 + AT_rich Low_complexity Low_complexity 1 60 0 1610 55 0 0 chrX 42546351 42546552 -120053378 + L1PA4 LINE L1 5951 6151 -4 31 0 0 0 chrX 42546553 42546584 -120053346 + AT_rich Low_complexity Low_complexity 1 31 0 685 38 0 0 chrX 42547166 42547246 -120052684 - U6 snRNA snRNA -27 80 1 2107 120 0 0 chrX 42547341 42547658 -120052272 + AluSq SINE Alu 2 318 0 449 161 12 12 chrX 42548014 42548095 -120051835 - L1M4 LINE L1 -6308 234 154 730 120 25 13 chrX 42548096 42548254 -120051676 + CT-rich Low_complexity Low_complexity 3 162 0 610 197 17 0 chrX 42548257 42548374 -120051556 - AluSg/x SINE Alu 0 310 192 261 119 0 0 chrX 42548377 42548419 -120051511 + FLAM_A SINE Alu 65 106 -27 817 184 112 15 chrX 42548419 42548615 -120051315 + AluJb SINE Alu 6 220 -92 291 109 0 36 chrX 42548615 42548670 -120051260 + FAM SINE Alu 127 179 0 614 193 141 47 chrX 42548685 42548877 -120051053 + AluJo SINE Alu 3 212 -100 831 176 7 13 chrX 42549775 42549953 -120049977 + AluSg/x SINE Alu 130 306 0 445 178 102 34 chrX 42549971 42550056 -120049874 - AluJo SINE Alu -100 212 115 1125 92 0 0 chrX 42550056 42550220 -120049710 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 445 178 102 34 chrX 42550220 42550252 -120049678 - AluJo SINE Alu -197 115 87 908 207 37 18 chrX 42550252 42550469 -120049461 - AluJo SINE Alu -91 221 1 570 29 0 0 chrX 42552042 42552110 -120047820 + (TTTC)n Simple_repeat Simple_repeat 3 70 0 1491 184 4 11 chrX 42552122 42552400 -120047530 - AluJo SINE Alu -36 276 1 1943 144 0 3 chrX 42552619 42552918 -120047012 - AluSq SINE Alu -11 302 5 356 100 100 0 chrX 42553725 42553785 -120046145 - L1MB7 LINE L1 -28 6156 6091 323 209 35 12 chrX 42554359 42554445 -120045485 - MIR SINE MIR -34 228 141 189 366 0 0 chrX 42554486 42554557 -120045373 + MIR SINE MIR 79 149 -113 212 312 46 28 chrX 42555869 42555978 -120043952 + MIR SINE MIR 79 189 -73 2909 133 41 4 chrX 42556077 42556536 -120043394 - Tigger1 DNA MER2_type 0 2418 1943 * 4809 158 69 49 chrX 42556531 42557358 -120042572 - Tigger1 DNA MER2_type -1379 1039 187 1411 91 34 0 chrX 42557358 42557567 -120042363 + L1MA2 LINE L1 6089 6304 0 4809 158 69 49 chrX 42557567 42557757 -120042173 - Tigger1 DNA MER2_type -2231 187 2 1951 156 7 0 chrX 42558320 42558621 -120041309 - AluSg SINE Alu -5 305 3 275 0 29 0 chrX 42559334 42559369 -120040561 + (CA)n Simple_repeat Simple_repeat 2 37 0 340 178 7 0 chrX 42559549 42559624 -120040306 - L1MC/D LINE L1 -446 5675 5612 341 277 10 10 chrX 42559626 42559727 -120040203 - L2 LINE L2 -2 3311 3211 270 0 0 0 chrX 42559753 42559783 -120040147 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 947 173 36 18 chrX 42559789 42559957 -120039973 - AluJo SINE Alu -30 282 112 260 301 9 44 chrX 42560539 42560652 -120039278 - MIR SINE MIR -105 157 49 1847 152 0 0 chrX 42561464 42561771 -120038159 - AluY SINE Alu 0 312 6 1761 188 0 0 chrX 42561785 42562083 -120037847 - AluJo SINE Alu -14 298 1 1853 131 3 7 chrX 42562314 42562597 -120037333 + AluSx SINE Alu 4 285 -27 189 0 0 0 chrX 42563011 42563032 -120036898 + (A)n Simple_repeat Simple_repeat 1 21 0 1897 145 16 19 chrX 42563040 42563350 -120036580 + AluSx SINE Alu 3 311 -1 2068 144 3 0 chrX 42563942 42564248 -120035682 + AluSg SINE Alu 1 307 -3 985 215 72 5 chrX 42564348 42564571 -120035359 - MER67C LTR ERV1 -281 429 192 564 122 0 0 chrX 42564572 42564654 -120035276 + AluJ/FLAM SINE Alu 2 83 -229 491 180 264 36 chrX 42564657 42564824 -120035106 - MER67C LTR ERV1 -505 205 1 1205 144 6 0 chrX 42564984 42565157 -120034773 - AluSp SINE Alu -19 294 121 437 205 71 18 chrX 42565204 42565316 -120034614 - Charlie2 DNA MER1_type -888 1974 1857 400 235 101 25 chrX 42565314 42565433 -120034497 - Charlie2 DNA MER1_type -2541 321 194 * 2176 119 0 7 chrX 42565433 42565736 -120034194 - AluSx SINE Alu -11 301 1 6899 13 0 0 chrX 42565829 42566593 -120033337 - L1PA2 LINE L1 -1 6154 5391 769 154 0 0 chrX 42566593 42566710 -120033220 - AluSq/x SINE Alu -194 118 2 1067 168 15 10 chrX 42566791 42566993 -120032937 - MER65C LTR ERV1 0 461 259 1047 279 51 51 chrX 42567020 42567393 -120032537 - MER67C-int LTR ERV1 -1 4870 4498 198 0 0 0 chrX 42567393 42567415 -120032515 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 1942 139 0 0 chrX 42567417 42567697 -120032233 - AluSx SINE Alu -32 280 1 1047 279 51 51 chrX 42567697 42567811 -120032119 - MER67C-int LTR ERV1 -373 4498 4380 370 210 16 0 chrX 42567814 42567876 -120032054 - MER67C-int LTR ERV1 -985 3886 3824 2096 110 3 0 chrX 42567884 42568195 -120031735 + AluY SINE Alu 1 312 0 2462 136 53 41 chrX 42568230 42568537 -120031393 + MER4E LTR ERV1 1 303 -476 2068 138 0 7 chrX 42568537 42568841 -120031089 - AluSx SINE Alu -10 302 1 2462 136 53 41 chrX 42568841 42569128 -120030802 + MER4E LTR ERV1 303 776 -3 347 252 5 112 chrX 42569131 42569221 -120030709 - MER67C-int LTR ERV1 -1076 3795 3697 2065 124 0 0 chrX 42569221 42569504 -120030426 + AluSc SINE Alu 2 284 -25 347 252 5 112 chrX 42569504 42569518 -120030412 - MER67C-int LTR ERV1 -1174 3697 3683 192 40 0 0 chrX 42569518 42569543 -120030387 + (CA)n Simple_repeat Simple_repeat 2 26 0 347 252 5 112 chrX 42569543 42569651 -120030279 - MER67C-int LTR ERV1 -1188 3683 3605 262 225 141 0 chrX 42569663 42569734 -120030196 - MER65-int LTR ERV1 -847 4089 4009 312 202 0 16 chrX 42569735 42569813 -120030117 - MER65-int LTR ERV1 -977 5262 3885 277 160 12 148 chrX 42569821 42569852 -120030078 - MER65-int LTR ERV1 -1152 3784 3750 2076 123 3 20 chrX 42569852 42570154 -120029776 - AluSx SINE Alu -15 297 1 277 160 12 148 chrX 42570154 42570221 -120029709 - MER65-int LTR ERV1 -1186 3750 3235 555 193 123 9 chrX 42570231 42570525 -120029405 + FLAM_C SINE Alu 2 133 0 1053 133 0 11 chrX 42570336 42570577 -120029353 + (GAAA)n Simple_repeat Simple_repeat 2 240 0 403 165 11 11 chrX 42570632 42570723 -120029207 + GA-rich Low_complexity Low_complexity 2 92 0 2177 195 81 109 chrX 42571354 42571528 -120028402 - MER65-int LTR ERV1 -1305 5026 4849 1548 159 19 11 chrX 42571528 42571798 -120028132 - AluJb SINE Alu -6 306 35 2177 195 81 109 chrX 42571798 42571875 -120028055 - MER65-int LTR ERV1 -1482 4849 4771 667 211 8 15 chrX 42571875 42572008 -120027922 - FLAM_C SINE Alu -1 132 1 2177 195 81 109 chrX 42572008 42572864 -120027066 - MER65-int LTR ERV1 -1560 4771 3925 1730 158 28 7 chrX 42572869 42573154 -120026776 + AluSx SINE Alu 1 291 -21 1399 149 106 40 chrX 42573161 42573462 -120026468 - MER4B LTR ERV1 -289 321 1 1104 221 69 0 chrX 42573484 42573701 -120026229 + MER65-int LTR ERV1 3824 4055 -816 888 272 77 57 chrX 42573791 42573914 -120026016 + MER65-int LTR ERV1 4368 4487 -384 1933 134 27 0 chrX 42573914 42574206 -120025724 + AluSq SINE Alu 1 300 -13 888 272 77 57 chrX 42574206 42574575 -120025355 + MER65-int LTR ERV1 4487 4870 -1 1082 173 15 10 chrX 42574602 42574804 -120025126 + MER65C LTR ERV1 259 461 0 988 138 7 0 chrX 42575135 42575280 -120024650 - AluSg SINE Alu -163 147 2 2012 134 13 19 chrX 42575907 42576221 -120023709 - AluSx SINE Alu 0 312 1 1816 110 18 14 chrX 42576654 42576936 -120022994 - AluSx SINE Alu -29 283 1 1637 176 3 22 chrX 42577165 42577478 -120022452 + AluJb SINE Alu 1 307 -5 257 290 57 40 chrX 42578267 42578391 -120021539 + MIR SINE MIR 32 157 -105 1790 169 17 0 chrX 42578992 42579288 -120020642 + AluJo SINE Alu 1 301 -11 271 255 112 10 chrX 42579305 42579403 -120020527 + L2 LINE L2 3184 3291 -22 420 216 6 3 chrX 42579410 42579508 -120020422 + L1ME LINE L1 5598 5697 -424 467 138 11 0 chrX 42579674 42579761 -120020169 + (TG)n Simple_repeat Simple_repeat 2 89 0 1965 111 0 27 chrX 42580485 42580782 -120019148 + AluY SINE Alu 4 292 -19 5119 145 69 50 chrX 42581361 42581556 -120018374 + Tigger1 DNA MER2_type 1 191 -2227 1379 104 19 5 chrX 42581556 42581768 -120018162 - L1MA2 LINE L1 0 6304 6090 5119 145 69 50 chrX 42581768 42582592 -120017338 + Tigger1 DNA MER2_type 191 1039 -1379 2724 144 48 9 chrX 42582587 42583044 -120016886 + Tigger1 DNA MER2_type 1943 2417 -1 * 233 315 46 19 chrX 42583144 42583252 -120016678 - MIR SINE MIR -73 189 79 419 294 80 116 chrX 42585193 42585591 -120014339 - L2 LINE L2 -2 3270 2887 373 281 106 19 chrX 42786460 42786620 -119813310 - MIR SINE MIR -43 219 46 739 233 161 9 chrX 42786798 42787021 -119812909 + MIR SINE MIR 6 262 0 231 220 17 17 chrX 42787215 42787274 -119812656 + L2 LINE L2 3214 3272 0 259 316 20 0 chrX 42787634 42787732 -119812198 + L2 LINE L2 2140 2239 -1075 239 111 0 0 chrX 42787734 42787770 -119812160 + MER63 DNA MER1_type 4 39 -891 373 127 30 96 chrX 42787770 42787888 -119812042 - L1M4 LINE L1 -407 5755 5647 484 311 130 13 chrX 42787890 42788128 -119811802 + L2 LINE L2 3007 3272 0 1555 240 45 55 chrX 42789091 42789439 -119810491 + L1ME3A LINE L1 5624 5967 -203 1810 171 3 0 chrX 42789439 42789732 -119810198 + AluJo SINE Alu 5 298 -14 1555 240 45 55 chrX 42789732 42789913 -119810017 + L1ME3A LINE L1 5967 6148 -22 550 298 57 36 chrX 42789951 42790199 -119809731 + MIR SINE MIR 8 260 -2 936 226 40 33 chrX 42790201 42790475 -119809455 - L1MCb LINE L1 -5364 681 406 1009 162 94 27 chrX 42790478 42790741 -119809189 + MLT1B LTR MaLR 5 226 -164 1880 234 96 9 chrX 42790741 42791305 -119808625 + L1MC4 LINE L1 5391 6003 -2039 * 2657 156 24 28 chrX 42790838 42791339 -119808591 + L1MB8 LINE L1 5530 6028 -150 567 228 16 0 chrX 42791368 42791495 -119808435 - L1MD3 LINE L1 -34 7961 7833 2573 205 28 15 chrX 42791497 42792039 -119807891 - L1MD2 LINE L1 -216 6143 5595 1045 93 33 0 chrX 42792047 42792197 -119807733 + L1PA14 LINE L1 5865 6019 -142 189 298 35 0 chrX 42792437 42792494 -119807436 + L2 LINE L2 3255 3313 0 222 250 0 0 chrX 42792508 42792548 -119807382 + L2 LINE L2 3199 3238 -34 397 283 66 13 chrX 42793011 42793163 -119806767 + MER5B DNA MER1_type 1 160 -18 632 187 0 0 chrX 42793463 42793570 -119806360 - AluJb SINE Alu 0 312 206 235 283 0 50 chrX 42795898 42795958 -119803972 - L2 LINE L2 -17 3255 3199 1524 249 100 7 chrX 42796971 42797432 -119802498 - L2 LINE L2 0 3313 2810 218 143 0 0 chrX 42797937 42797972 -119801958 + MIR SINE MIR 110 144 -64 2081 259 72 36 chrX 42798051 42798824 -119801106 + L1MC4a LINE L1 5366 6166 -1642 1231 274 113 34 chrX 42799067 42799633 -119800297 + L3 LINE CR1 429 1039 -538 413 226 95 51 chrX 42799718 42799855 -119800075 - MIR SINE MIR -55 207 65 * 921 175 13 0 chrX 42799851 42800005 -119799925 + MER5A DNA MER1_type 12 167 -22 229 319 14 14 chrX 42800116 42800185 -119799745 - L2 LINE L2 -4 3268 3200 244 272 9 70 chrX 42800520 42800634 -119799296 + L3 LINE CR1 1466 1572 -5 207 0 0 0 chrX 42801596 42801619 -119798311 + (TG)n Simple_repeat Simple_repeat 2 24 0 376 225 171 8 chrX 42802396 42802525 -119797405 - MIR SINE MIR -49 213 64 225 260 0 0 chrX 42803499 42803549 -119796381 + GA-rich Low_complexity Low_complexity 1 50 0 440 272 15 37 chrX 42803851 42803987 -119795943 - MIR SINE MIR -74 188 56 1348 176 0 14 chrX 42804222 42804444 -119795486 - MER20 DNA MER1_type 0 219 1 2019 131 3 34 chrX 42804483 42804804 -119795126 + AluJo SINE Alu 1 311 -1 435 236 77 112 chrX 42804804 42805037 -119794893 + MIR SINE MIR 22 246 -16 1644 67 0 0 chrX 42806803 42806997 -119792933 - AluSc SINE Alu -11 298 105 507 121 0 0 chrX 42806997 42807063 -119792867 - AluS SINE Alu -245 67 2 424 239 73 0 chrX 42807403 42807512 -119792418 - L2 LINE L2 -4 3309 3193 279 0 0 0 chrX 42807885 42807916 -119792014 + (GA)n Simple_repeat Simple_repeat 1 31 0 451 371 26 0 chrX 42808327 42808478 -119791452 - L2 LINE L2 -16 3256 3102 1133 160 27 32 chrX 42808712 42808931 -119790999 + MLT1C LTR MaLR 8 225 -242 * 1419 178 14 31 chrX 42808928 42809214 -119790716 + MLT1C LTR MaLR 187 467 0 2503 224 60 73 chrX 42809214 42809628 -119790302 + MLT1C-int LTR MaLR 1 419 -952 1153 194 54 132 chrX 42809628 42810051 -119789879 - MLT1B LTR MaLR 0 390 1 2503 224 60 73 chrX 42810051 42810739 -119789191 + MLT1C-int LTR MaLR 419 1076 -295 2577 23 0 17 chrX 42810739 42811040 -119788890 - AluY SINE Alu -15 296 1 2503 224 60 73 chrX 42811040 42811333 -119788597 + MLT1C-int LTR MaLR 1076 1371 0 1999 181 20 103 chrX 42811335 42811842 -119788088 + MLT1C LTR MaLR 3 467 0 2178 156 16 16 chrX 42812075 42812440 -119787490 + MLT1A1 LTR MaLR 1 365 0 2191 176 134 13 chrX 42812440 42812888 -119787042 + MLT1A1-int LTR MaLR 1 502 -1233 1930 261 68 18 chrX 42812885 42813455 -119786475 + L1M3b LINE L1 1 599 -5682 * 9045 149 20 33 chrX 42813587 42814280 -119785650 + L1MA7 LINE L1 3656 4357 -1934 1546 156 0 4 chrX 42814280 42814517 -119785413 - MER46A DNA MER2_type 0 236 1 9045 149 20 33 chrX 42814517 42815192 -119784738 + L1MA7 LINE L1 4357 5039 -1252 2254 149 6 43 chrX 42815192 42815541 -119784389 + MER1B DNA MER1_type 2 337 0 9045 149 20 33 chrX 42815541 42816851 -119783079 + L1MA7 LINE L1 5039 6289 -2 310 155 43 6 chrX 42816851 42816964 -119782966 + Charlie5 DNA MER1_type 2378 2530 -82 842 222 62 31 chrX 42816964 42817189 -119782741 + MLT1A1-int LTR MaLR 501 732 -639 413 207 12 0 chrX 42817292 42817374 -119782556 + MLT1A1-int LTR MaLR 682 764 -971 2092 211 53 18 chrX 42817524 42817617 -119782313 + MLT1A1-int LTR MaLR 1269 1357 -378 1595 177 174 19 chrX 42817617 42817979 -119781951 - MER47B DNA MER2_type 0 418 1 2092 211 53 18 chrX 42817979 42818335 -119781595 + MLT1A1-int LTR MaLR 1357 1734 -1 1431 172 23 19 chrX 42818378 42818634 -119781296 + MLT1A1 LTR MaLR 109 365 0 402 268 89 0 chrX 42819024 42819147 -119780783 + MER94 DNA DNA 1 134 0 313 350 60 8 chrX 42819298 42819415 -119780515 + MIR SINE MIR 22 144 -64 485 302 49 54 chrX 42819420 42819625 -119780305 - L3 LINE CR1 -2 1575 1372 303 346 75 37 chrX 42819620 42819834 -119780096 + L3 LINE CR1 1355 1576 -1 * 340 240 180 0 chrX 42821974 42822074 -119777856 - L2 LINE L2 0 3313 3196 431 310 16 16 chrX 42822274 42822403 -119777527 + MIR SINE MIR 8 136 -126 960 295 8 8 chrX 42823059 42823313 -119776617 - MIR SINE MIR -3 259 6 342 0 0 0 chrX 42824955 42824993 -119774937 + (CA)n Simple_repeat Simple_repeat 2 39 0 5186 192 60 13 chrX 42825385 42826378 -119773552 + MER45B DNA AcHobo 1 1040 0 432 269 19 9 chrX 42827126 42827234 -119772696 + L2 LINE L2 2688 2796 -518 930 249 5 33 chrX 42827597 42827810 -119772120 + Charlie8 DNA MER1_type 27 233 -2184 342 98 0 0 chrX 42827884 42827935 -119771995 + (CA)n Simple_repeat Simple_repeat 2 52 0 238 258 0 16 chrX 42828777 42828839 -119771091 + L3 LINE CR1 435 495 -1082 5650 140 13 42 chrX 42829140 42829935 -119769995 + L1MC2 LINE L1 5427 6191 -153 312 27 0 0 chrX 42829935 42829972 -119769958 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5650 140 13 42 chrX 42829972 42830117 -119769813 + L1MC2 LINE L1 6191 6339 -5 225 0 0 0 chrX 42830553 42830578 -119769352 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2294 41 21 14 chrX 42831767 42832058 -119767872 + AluY SINE Alu 1 293 -18 1604 164 50 14 chrX 42833396 42833677 -119766253 - AluJo SINE Alu -21 291 1 569 159 0 0 chrX 42834198 42834286 -119765644 + MIR SINE MIR 61 148 -114 310 225 281 0 chrX 42834431 42834520 -119765410 + MER81 DNA DNA 1 114 0 703 268 81 31 chrX 42834740 42835061 -119764869 - L1MC4a LINE L1 -1831 5977 5641 306 242 0 101 chrX 42835388 42835487 -119764443 + MIR SINE MIR 20 108 -154 299 294 49 35 chrX 42835590 42835733 -119764197 - MIR3 SINE MIR -21 187 43 412 238 217 22 chrX 42836655 42836824 -119763106 - MIR SINE MIR -54 208 6 2003 141 69 24 chrX 42837230 42837563 -119762367 - MER7A DNA MER2_type 0 346 1 219 69 0 0 chrX 42838066 42838095 -119761835 + (TG)n Simple_repeat Simple_repeat 1 29 0 297 131 0 0 chrX 42838095 42838156 -119761774 + (GA)n Simple_repeat Simple_repeat 2 62 0 271 340 30 0 chrX 42838590 42838690 -119761240 - MIR SINE MIR -8 254 152 21 82 0 0 chrX 42838941 42838990 -119760940 + AT_rich Low_complexity Low_complexity 1 49 0 244 286 86 73 chrX 42839026 42839195 -119760735 - MIR SINE MIR -59 149 16 456 307 70 42 chrX 42840659 42840874 -119759056 - MIR SINE MIR -38 224 4 395 275 170 44 chrX 42841618 42841847 -119758083 + MIR SINE MIR 2 259 -3 2794 202 30 56 chrX 42844986 42845595 -119754335 - MLT1E LTR MaLR 0 593 1 4938 186 60 28 chrX 42845847 42846062 -119753868 - L1MD2 LINE L1 -4 6355 6148 297 0 0 0 chrX 42846062 42846095 -119753835 + (TG)n Simple_repeat Simple_repeat 2 34 0 4938 186 60 28 chrX 42846095 42846645 -119753285 - L1MD2 LINE L1 -211 6148 5533 7188 174 10 1 chrX 42846645 42848687 -119751243 - L1PA14 LINE L1 -2 6159 4104 4938 186 60 28 chrX 42848687 42849140 -119750790 - L1MD2 LINE L1 -826 5533 5096 234 265 0 0 chrX 42849219 42849287 -119750643 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 209 57 29 0 chrX 42849543 42849578 -119750352 + (TA)n Simple_repeat Simple_repeat 1 36 0 233 108 15 62 chrX 42849677 42849742 -119750188 + LTR66 LTR ERVL 394 455 -155 206 316 0 0 chrX 42849998 42850055 -119749875 + G-rich Low_complexity Low_complexity 1 57 0 291 28 0 0 chrX 42850396 42850432 -119749498 + (TG)n Simple_repeat Simple_repeat 2 37 0 214 240 13 67 chrX 42852068 42852143 -119747787 + L2 LINE L2 3200 3270 -2 403 250 0 121 chrX 42853055 42853265 -119746665 - MIR SINE MIR -45 163 33 461 296 0 85 chrX 42853811 42854000 -119745930 + MIR3 SINE MIR 10 182 -26 183 374 24 37 chrX 42854016 42854262 -119745668 - L2 LINE L2 -210 3062 2820 411 333 36 5 chrX 42855829 42856024 -119743906 - L2 LINE L2 -2 3311 3111 297 284 9 9 chrX 42856067 42856183 -119743747 - L1MC4a LINE L1 -1340 6468 6353 1564 208 60 57 chrX 42856194 42856742 -119743188 - L1MC4 LINE L1 -7 8035 7486 756 280 49 12 chrX 42856742 42857092 -119742838 - L2 LINE L2 -258 3055 2698 1923 81 24 0 chrX 42857101 42857348 -119742582 + L1PA10 LINE L1 5904 6156 -12 214 182 0 0 chrX 42857361 42857405 -119742525 + A-rich Low_complexity Low_complexity 1 44 0 1797 241 69 14 chrX 42857537 42858030 -119741900 - HAL1 LINE L1 -172 2335 1816 1340 236 74 7 chrX 42858025 42858458 -119741472 - HAL1 LINE L1 -941 1566 1105 * 1789 231 45 105 chrX 42858467 42859198 -119740732 - MER21B LTR ERV1 -149 714 28 2179 98 27 7 chrX 42859283 42859579 -119740351 - L1PA16 LINE L1 -10 6156 5855 3119 231 72 43 chrX 42859587 42859869 -119740061 - HAL1 LINE L1 -1434 1073 800 2597 238 20 40 chrX 42859869 42860474 -119739456 - MLT1E LTR MaLR 0 593 1 3119 231 72 43 chrX 42860474 42860660 -119739270 - HAL1 LINE L1 -1707 800 621 2006 128 0 30 chrX 42860660 42860965 -119738965 + AluSg SINE Alu 1 296 -14 3119 231 72 43 chrX 42860965 42861417 -119738513 - HAL1 LINE L1 -1886 621 126 310 273 106 25 chrX 42861490 42861651 -119738279 - L2 LINE L2 -588 2726 2553 351 313 0 0 chrX 42861905 42862001 -119737929 - MIR SINE MIR -12 250 155 1801 197 27 32 chrX 42862664 42863040 -119736890 - MLT1A2 LTR MaLR 0 374 1 1179 338 165 27 chrX 42863971 42865282 -119734648 - L2 LINE L2 0 3272 1782 256 253 11 35 chrX 42865299 42865386 -119734544 + Charlie7 DNA MER1_type 601 685 -1927 875 275 164 30 chrX 42866691 42867087 -119732843 - MLT1J2 LTR MaLR -1 449 1 15804 38 2 1 chrX 42867128 42870199 -119729731 - L1PA5 LINE L1 0 6154 3081 268 180 60 60 chrX 42870199 42870299 -119729631 + L1MC/D LINE L1 5770 5869 -1939 21 57 0 0 chrX 42870581 42870616 -119729314 + AT_rich Low_complexity Low_complexity 1 35 0 281 312 10 85 chrX 42870655 42870854 -119729076 - L2 LINE L2 -954 2360 2177 389 219 0 0 chrX 42871018 42871091 -119728839 - MER5C DNA MER1_type -248 76 4 245 306 187 14 chrX 42871117 42871326 -119728604 - L2 LINE L2 -1156 2158 1914 253 258 0 0 chrX 42871381 42871443 -119728487 - MIR SINE MIR -15 247 186 2127 91 17 3 chrX 42872058 42872345 -119727585 + AluSg SINE Alu 1 291 -19 535 217 28 0 chrX 42872916 42873022 -119726908 + MIR3 SINE MIR 63 171 -37 962 186 0 0 chrX 42873146 42873318 -119726612 + MSTB1 LTR MaLR 261 432 0 805 191 71 38 chrX 42874683 42874866 -119725064 + MER5A DNA MER1_type 1 189 0 267 271 71 12 chrX 42874866 42874951 -119724979 + MIR SINE MIR 9 98 -164 186 133 0 0 chrX 42875040 42875070 -119724860 + (TG)n Simple_repeat Simple_repeat 2 31 0 461 233 158 8 chrX 42875076 42875209 -119724721 - MIR SINE MIR -92 170 18 286 207 161 0 chrX 42875214 42875301 -119724629 + MIR SINE MIR 101 201 -61 347 220 44 33 chrX 42875990 42876081 -119723849 - L2 LINE L2 0 3272 3181 1054 302 118 9 chrX 42876182 42876813 -119723117 - L2 LINE L2 -4 3309 2608 214 358 28 98 chrX 42877428 42877682 -119722248 - L2 LINE L2 -8 3264 3029 634 309 113 43 chrX 42877691 42878018 -119721912 - L2 LINE L2 0 3272 2923 399 301 27 27 chrX 42878683 42878869 -119721061 - L1ME3A LINE L1 -15 6155 5970 21 57 0 0 chrX 42878963 42878998 -119720932 + AT_rich Low_complexity Low_complexity 1 35 0 2003 236 75 2 chrX 42879025 42879568 -119720362 - L1ME3A LINE L1 -265 5905 5323 576 347 144 5 chrX 42879703 42880106 -119719824 - L2 LINE L2 -586 2728 2270 285 183 0 0 chrX 42880106 42880166 -119719764 + (TG)n Simple_repeat Simple_repeat 2 61 0 1303 141 28 14 chrX 42880294 42880507 -119719423 - MER20 DNA MER1_type 0 219 4 248 227 15 15 chrX 42880576 42880642 -119719288 + (TA)n Simple_repeat Simple_repeat 2 67 0 308 364 68 14 chrX 42880642 42880922 -119719008 - L2 LINE L2 -1089 2225 1931 233 279 121 24 chrX 42881073 42881238 -119718692 + L2 LINE L2 3128 3308 -5 203 214 24 0 chrX 42881516 42881558 -119718372 - L2 LINE L2 -15 3257 3215 333 267 199 0 chrX 42881933 42882064 -119717866 + MIR SINE MIR 51 207 -55 303 280 0 27 chrX 42882962 42883037 -119716893 - L2 LINE L2 -13 3300 3228 343 312 24 58 chrX 42884935 42885140 -119714790 - L3 LINE CR1 -608 969 772 218 207 241 0 chrX 42885139 42885197 -119714733 - L2 LINE L2 0 3272 3201 * 565 249 139 0 chrX 42885360 42885525 -119714405 + MIR SINE MIR 65 252 -10 569 289 99 0 chrX 42885843 42885995 -119713935 - MIR SINE MIR -92 170 4 621 322 157 15 chrX 42886024 42886431 -119713499 - L2 LINE L2 -932 2382 1918 6469 210 91 38 chrX 42886436 42888247 -119711683 + L1MD2 LINE L1 19 1732 -4808 2283 158 8 15 chrX 42888247 42888639 -119711291 + MLT1B LTR MaLR 1 389 -1 6469 210 91 38 chrX 42888639 42888746 -119711184 + L1MD2 LINE L1 1732 1832 -4708 1984 133 136 16 chrX 42888746 42889128 -119710802 + MSTA LTR MaLR 1 428 0 6469 210 91 38 chrX 42889128 42889830 -119710100 + L1MD2 LINE L1 1832 2495 -4045 1555 204 77 0 chrX 42889830 42890169 -119709761 + MLT1A1 LTR MaLR 1 365 0 6469 210 91 38 chrX 42890169 42890319 -119709611 + L1MD2 LINE L1 2495 2636 -3904 2241 140 34 10 chrX 42890319 42890704 -119709226 - L1PA16 LINE L1 -1 6165 5772 6469 210 91 38 chrX 42890704 42890845 -119709085 + L1MD2 LINE L1 2636 3229 -3311 1924 213 61 28 chrX 42890843 42891417 -119708513 + L1MD2 LINE L1 4190 4782 -1758 * 21 0 0 0 chrX 42891483 42891504 -119708426 + AT_rich Low_complexity Low_complexity 1 21 0 551 224 156 24 chrX 42891602 42891897 -119708033 + L1MD2 LINE L1 4752 5085 -1455 * 1774 212 26 6 chrX 42891868 42892468 -119707462 + L1MD2 LINE L1 6077 6740 -13 223 289 52 0 chrX 42892532 42892629 -119707301 - L2 LINE L2 -1662 1652 1551 6322 119 53 51 chrX 42892645 42893877 -119706053 - MER52C LTR ERV1 -44 1234 1 203 196 22 0 chrX 42893964 42894010 -119705920 + GA-rich Low_complexity Low_complexity 5 51 0 494 345 88 42 chrX 42894047 42894401 -119705529 - L2 LINE L2 -2363 951 582 525 233 8 8 chrX 42894614 42894734 -119705196 - MER94 DNA DNA -3 131 12 527 362 99 15 chrX 42894749 42895161 -119704769 - L3 LINE CR1 -947 630 184 866 309 16 82 chrX 42895286 42895665 -119704265 + L2 LINE L2 2916 3269 -3 201 258 155 31 chrX 42896199 42896296 -119703634 + MIR3 SINE MIR 93 201 -7 22 35 0 0 chrX 42896825 42896854 -119703076 + AT_rich Low_complexity Low_complexity 1 29 0 3669 181 18 19 chrX 42896854 42897643 -119702287 - L1MA9 LINE L1 -38 6274 5487 730 319 4 9 chrX 42899551 42899783 -119700147 + MIR SINE MIR 29 259 -3 239 299 205 16 chrX 42899835 42899962 -119699968 + MIR SINE MIR 95 245 -17 560 282 5 46 chrX 42900722 42900808 -119699122 + MIR SINE MIR 2 90 -172 2714 126 27 2 chrX 42900808 42901222 -119698708 + MSTA LTR MaLR 3 426 -2 560 282 5 46 chrX 42901222 42901330 -119698600 + MIR SINE MIR 90 188 -74 579 271 90 0 chrX 42901356 42901522 -119698408 - MIR SINE MIR -38 224 44 558 271 109 26 chrX 42901673 42901902 -119698028 - MIR SINE MIR 0 262 15 193 259 37 19 chrX 42903144 42903198 -119696732 - L2 LINE L2 -82 3190 3136 866 102 29 0 chrX 42903359 42903496 -119696434 + L1MA9 LINE L1 6172 6312 0 672 285 241 22 chrX 42903621 42903986 -119695944 - L2 LINE L2 -13 3300 2856 742 339 52 47 chrX 42903995 42904105 -119695825 - L2 LINE L2 -17 3296 3188 2609 96 74 20 chrX 42904105 42904511 -119695419 - MSTA LTR MaLR 0 428 1 742 339 52 47 chrX 42904511 42904904 -119695026 - L2 LINE L2 -125 3188 2798 1975 50 0 0 chrX 42904904 42905144 -119694786 + L1PA5 LINE L1 5902 6141 -13 742 339 52 47 chrX 42905144 42905577 -119694353 - L2 LINE L2 -515 2798 2355 426 39 0 0 chrX 42905603 42905655 -119694275 + (TG)n Simple_repeat Simple_repeat 1 52 0 188 367 102 20 chrX 42905753 42905900 -119694030 + L2 LINE L2 2813 2971 -343 214 162 0 0 chrX 42906639 42906676 -119693254 + CT-rich Low_complexity Low_complexity 2 38 0 506 243 27 61 chrX 42907172 42907320 -119692610 + L2 LINE L2 3171 3313 0 828 160 134 53 chrX 42908641 42908828 -119691102 + AluJo SINE Alu 86 287 -25 1040 241 63 101 chrX 42909418 42909885 -119690045 - MLT1G1 LTR MaLR -29 520 1 259 210 12 25 chrX 42909888 42909969 -119689961 + CT-rich Low_complexity Low_complexity 4 83 0 345 193 32 12 chrX 42909975 42910093 -119689837 - AluSp/q SINE Alu 0 303 225 578 294 89 28 chrX 42910277 42910559 -119689371 + L2 LINE L2 3012 3310 -3 253 309 168 7 chrX 42911042 42911191 -119688739 + L2 LINE L2 2554 2726 -588 256 133 0 150 chrX 42911333 42911393 -119688537 - L2 LINE L2 0 3313 3263 236 320 202 39 chrX 42911637 42911847 -119688083 - L2 LINE L2 -338 2976 2802 2443 139 31 21 chrX 42911847 42912271 -119687659 + MSTA LTR MaLR 1 428 0 236 320 202 39 chrX 42912271 42912416 -119687514 - L2 LINE L2 -512 2802 2563 267 320 96 47 chrX 42912504 42912848 -119687082 - L2 LINE L2 -1409 1905 1545 516 313 36 16 chrX 42912876 42913068 -119686862 + MIR SINE MIR 11 206 -56 528 253 44 38 chrX 42913657 42913755 -119686175 + MIR SINE MIR 48 149 -113 1799 180 65 31 chrX 42913755 42914138 -119685792 - MSTD LTR MaLR 0 396 1 528 253 44 38 chrX 42914138 42914197 -119685733 + MIR SINE MIR 149 206 -56 377 293 0 0 chrX 42914262 42914344 -119685586 - L2 LINE L2 0 3272 3191 270 189 82 74 chrX 42914582 42914704 -119685226 - LTR67 LTR ERVL -21 536 414 1334 353 63 32 chrX 42914715 42915752 -119684178 - L2 LINE L2 -493 2821 1753 356 309 8 0 chrX 42915830 42915956 -119683974 + L1M4b LINE L1 105 231 -6628 228 191 32 63 chrX 42916356 42916419 -119683511 + L1M4b LINE L1 363 423 -6436 2361 209 51 30 chrX 42916588 42917210 -119682720 + L1M4b LINE L1 977 1611 -5248 736 8 57 8 chrX 42917464 42917586 -119682344 + (TA)n Simple_repeat Simple_repeat 2 129 0 22 70 0 0 chrX 42921665 42921708 -119678222 + AT_rich Low_complexity Low_complexity 1 43 0 691 246 32 37 chrX 42922178 42922403 -119677527 - MIR SINE MIR -30 232 2 269 228 11 76 chrX 42922403 42922491 -119677439 - MIR SINE MIR -74 188 107 237 324 0 36 chrX 42923434 42923545 -119676385 + MIR SINE MIR 104 210 -52 198 103 0 0 chrX 42924141 42924170 -119675760 + (A)n Simple_repeat Simple_repeat 1 29 0 181 254 0 42 chrX 42924174 42924245 -119675685 + L2 LINE L2 2918 2985 -287 383 347 42 5 chrX 42924533 42924726 -119675204 + L2 LINE L2 2586 2785 -529 187 276 236 57 chrX 42924763 42924886 -119675044 + L2 LINE L2 2912 3056 -216 180 125 0 0 chrX 42925472 42925504 -119674426 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 611 214 0 71 chrX 42926059 42926199 -119673731 - MER91B DNA MER1_type -60 130 1 225 216 45 114 chrX 42926885 42926973 -119672957 - MER91A DNA MER1_type -2 194 113 223 341 12 24 chrX 42927084 42927169 -119672761 - MIR SINE MIR -96 166 83 180 111 0 0 chrX 42928179 42928206 -119671724 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 203 208 75 19 chrX 42928451 42928504 -119671426 + MIR3 SINE MIR 151 206 -2 1102 88 17 17 chrX 42930558 42930739 -119669191 + L1PA14 LINE L1 5979 6159 -2 6250 200 53 18 chrX 42930751 42932710 -119667220 - L1MDa LINE L1 -3580 2960 933 300 276 0 66 chrX 42932745 42932821 -119667109 - L1MDa LINE L1 -6343 197 127 1086 227 59 0 chrX 42932828 42933066 -119666864 - L1MDa LINE L1 -5452 1088 837 575 273 12 12 chrX 42933072 42933237 -119666693 - L1MDa LINE L1 -6357 183 19 591 174 14 14 chrX 42933247 42933391 -119666539 + L1MB8 LINE L1 6033 6176 -2 2186 116 0 17 chrX 42933425 42933727 -119666203 + AluSx SINE Alu 1 297 -15 371 377 52 5 chrX 42933921 42934112 -119665818 - MIR SINE MIR -6 256 57 255 306 102 48 chrX 42934129 42934315 -119665615 + L2 LINE L2 3118 3313 0 10113 224 64 39 chrX 42934445 42939284 -119660646 - L1MCb LINE L1 -886 5678 600 800 273 39 58 chrX 42939283 42939881 -119660049 - L1M4b LINE L1 -4080 3058 2473 * 2455 244 24 19 chrX 42940005 42940235 -119659695 - L1M4b LINE L1 -4543 2416 2189 2404 97 0 0 chrX 42940235 42940535 -119659395 + AluSc SINE Alu 1 300 -9 2455 244 24 19 chrX 42940535 42940556 -119659374 - L1M4b LINE L1 -4770 2189 2170 216 0 0 0 chrX 42940556 42940580 -119659350 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2455 244 24 19 chrX 42940580 42941205 -119658725 - L1M4b LINE L1 -4789 2170 1541 488 211 56 7 chrX 42942369 42942511 -119657419 + L1ME4a LINE L1 5956 6104 -17 256 283 0 0 chrX 42942684 42942737 -119657193 + L2 LINE L2 3228 3280 -33 189 0 0 0 chrX 42943371 42943392 -119656538 + (T)n Simple_repeat Simple_repeat 1 21 0 327 130 0 0 chrX 42943843 42943897 -119656033 + (T)n Simple_repeat Simple_repeat 1 54 0 362 250 24 0 chrX 42944268 42944436 -119655494 + CT-rich Low_complexity Low_complexity 2 173 0 475 234 29 0 chrX 42944481 42944652 -119655278 + CT-rich Low_complexity Low_complexity 2 177 0 296 200 0 0 chrX 42944943 42945013 -119654917 + L1MA4 LINE L1 6226 6295 -5 30 0 0 0 chrX 42945013 42945043 -119654887 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chrX 42945260 42945299 -119654631 + AT_rich Low_complexity Low_complexity 1 39 0 956 207 34 0 chrX 42945751 42945988 -119653942 - L1MB7 LINE L1 -19 6165 5921 342 67 0 0 chrX 42946978 42947023 -119652907 + (T)n Simple_repeat Simple_repeat 1 45 0 216 0 0 0 chrX 42949839 42949863 -119650067 + (TG)n Simple_repeat Simple_repeat 1 24 0 193 339 46 18 chrX 43150045 43150154 -119449776 - MIR SINE MIR -72 190 79 2134 124 3 0 chrX 43151114 43151421 -119448509 - AluSc SINE Alu -1 308 1 296 256 0 22 chrX 43152179 43152269 -119447661 + MIR SINE MIR 141 228 -34 321 96 96 0 chrX 43152846 43152898 -119447032 + L1MB7 LINE L1 6100 6156 -28 2193 124 0 3 chrX 43153712 43154019 -119445911 + AluSq SINE Alu 3 308 -5 1743 166 3 10 chrX 43154517 43154813 -119445117 + AluJo SINE Alu 1 294 -18 189 0 0 0 chrX 43154813 43154834 -119445096 + (GA)n Simple_repeat Simple_repeat 2 22 0 336 108 154 0 chrX 43155842 43155907 -119444023 + FRAM/FAM SINE Alu 2 76 -90 1100 112 12 12 chrX 43155907 43156077 -119443853 - AluSg/x SINE Alu -6 304 135 246 158 0 0 chrX 43156822 43156873 -119443057 + T-rich Low_complexity Low_complexity 1 52 0 3999 18 0 0 chrX 43156873 43157326 -119442604 - L1PA3 LINE L1 0 6155 5703 563 193 88 78 chrX 43157447 43157639 -119442291 - AluJo SINE Alu -114 198 5 244 170 21 0 chrX 43157648 43157695 -119442235 - AluSg/x SINE Alu -169 133 86 911 178 131 0 chrX 43157695 43157886 -119442044 - AluJo SINE Alu -92 220 5 296 115 0 0 chrX 43157902 43157948 -119441982 - AluSg/x SINE Alu -177 123 84 889 157 112 20 chrX 43157948 43158145 -119441785 - AluJb SINE Alu -92 220 6 269 143 0 0 chrX 43158145 43158187 -119441743 - AluJo/FLAM SINE Alu -195 107 66 523 182 20 0 chrX 43158190 43158289 -119441641 + Alu SINE Alu 193 293 -18 1222 32 0 43 chrX 43158290 43158322 -119441608 + (GGGAA)n Simple_repeat Simple_repeat 1 207 0 1222 32 0 43 chrX 43158322 43158507 -119441423 + (GGGAA)n Simple_repeat Simple_repeat 3 179 0 900 148 0 22 chrX 43158583 43158765 -119441165 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 487 171 12 0 chrX 43158766 43158848 -119441082 + L1MD2 LINE L1 153 235 -6307 23 33 0 0 chrX 43159197 43159227 -119440703 + AT_rich Low_complexity Low_complexity 1 30 0 2146 102 0 0 chrX 43159238 43159512 -119440418 - AluSq SINE Alu -37 276 3 189 0 0 0 chrX 43160321 43160342 -119439588 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 930 50 100 0 chrX 43160342 43160462 -119439468 - AluY SINE Alu -179 132 1 2540 176 85 37 chrX 43160464 43160946 -119438984 - L1MD2 LINE L1 -534 5825 5368 1864 151 0 35 chrX 43160946 43161298 -119438632 - AluSx SINE Alu 0 312 1 2540 176 85 37 chrX 43161298 43161908 -119438022 - L1MD2 LINE L1 -991 5368 4675 2255 96 0 3 chrX 43161912 43162204 -119437726 - AluSx SINE Alu -21 291 1 260 283 45 65 chrX 43162343 43162590 -119437340 + L1M4 LINE L1 4882 5123 -1023 306 236 6 115 chrX 43162810 43162922 -119437008 + L1MD2 LINE L1 1566 1654 -4980 2194 123 0 0 chrX 43162922 43163230 -119436700 + AluSx SINE Alu 1 308 -4 306 236 6 115 chrX 43163230 43163291 -119436639 + L1MD2 LINE L1 1654 1720 -4914 1844 129 0 0 chrX 43163298 43163553 -119436377 + AluSq SINE Alu 35 289 -24 3592 193 86 35 chrX 43163561 43163803 -119436127 + L1MD2 LINE L1 5174 5402 -1455 249 0 0 68 chrX 43163803 43163847 -119436083 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3592 193 86 35 chrX 43163847 43163864 -119436066 + L1MD2 LINE L1 5402 5417 -1440 975 115 0 0 chrX 43163864 43164012 -119435918 + (TA)n Simple_repeat Simple_repeat 2 149 0 3592 193 86 35 chrX 43164012 43164315 -119435615 + L1MD2 LINE L1 5417 5703 -1154 1993 131 3 34 chrX 43164315 43164636 -119435294 + AluSx SINE Alu 2 312 0 3592 193 86 35 chrX 43164636 43165137 -119434793 + L1MD2 LINE L1 5703 6335 -522 2039 117 0 68 chrX 43165137 43165461 -119434469 + AluSx SINE Alu 1 302 -10 3592 193 86 35 chrX 43165461 43165715 -119434215 + L1MD2 LINE L1 6335 6575 -282 2055 139 3 0 chrX 43165715 43166017 -119433913 - AluSx SINE Alu -9 303 1 27 29 0 0 chrX 43166055 43166089 -119433841 + AT_rich Low_complexity Low_complexity 1 34 0 423 117 0 0 chrX 43166889 43166949 -119432981 + AluS SINE Alu 3 62 -256 575 146 27 180 chrX 43166953 43167181 -119432749 - LOR1-int LTR ERV1 -2378 2493 1366 2141 100 3 6 chrX 43167181 43167492 -119432438 + AluY SINE Alu 1 310 -1 1013 140 6 0 chrX 43167492 43167649 -119432281 + AluSg/x SINE Alu 132 289 -21 207 0 0 0 chrX 43167655 43167678 -119432252 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2742 189 71 34 chrX 43167682 43168396 -119431534 - LOR1-int LTR ERV1 -2561 2310 1570 958 215 31 25 chrX 43168396 43168711 -119431219 - MER34 LTR ERV1 -162 380 34 2130 132 0 3 chrX 43169230 43169541 -119430389 + AluSx SINE Alu 1 310 -2 248 102 20 0 chrX 43169544 43169593 -119430337 + (GAAAA)n Simple_repeat Simple_repeat 3 52 0 1711 136 65 4 chrX 43169900 43170179 -119429751 - AluJb SINE Alu -12 300 5 1825 224 27 10 chrX 43170179 43170589 -119429341 - MER65C LTR ERV1 -26 435 19 1930 127 11 0 chrX 43170599 43170883 -119429047 + AluSx SINE Alu 10 296 -16 1181 189 12 62 chrX 43170995 43171345 -119428585 + MER31A LTR ERV1 2 447 -38 844 203 68 0 chrX 43171348 43171511 -119428419 - FAM SINE Alu 0 175 2 986 140 0 0 chrX 43171555 43171698 -119428232 - AluJb SINE Alu -169 143 1 245 331 41 32 chrX 43171903 43172217 -119427713 - L1MEd LINE L1 -4888 1231 915 2145 117 3 0 chrX 43172229 43172553 -119427377 - AluSx SINE Alu 0 312 1 2097 137 3 0 chrX 43172553 43172853 -119427077 - AluSq SINE Alu -10 303 3 813 276 14 5 chrX 43173599 43173820 -119426110 - MIR SINE MIR -28 234 12 1588 193 7 17 chrX 43173829 43174130 -119425800 + AluJo SINE Alu 5 302 -10 1826 173 7 0 chrX 43174515 43174822 -119425108 - AluJb SINE Alu -3 309 1 325 221 63 113 chrX 43174878 43175100 -119424830 - HAL1 LINE L1 -1046 1461 1251 1322 160 10 0 chrX 43175117 43175323 -119424607 - AluSg/x SINE Alu -14 296 89 2305 105 0 0 chrX 43175952 43176256 -119423674 + AluSc SINE Alu 1 304 -5 41228 65 6 2 chrX 43176811 43182038 -119417892 + L1PA5 LINE L1 1 5248 -898 5304 43 0 3 chrX 43182038 43182665 -119417265 + L1PA5 LINE L1 5524 6151 -3 226 287 74 19 chrX 43182667 43182775 -119417155 + MIR SINE MIR 84 197 -65 2976 121 50 4 chrX 43182869 43183324 -119416606 - Tigger1 DNA MER2_type 0 2418 1943 * 5339 135 65 52 chrX 43183317 43184149 -119415781 - Tigger1 DNA MER2_type -1377 1041 192 1442 108 14 5 chrX 43184149 43184362 -119415568 + L1MA2 LINE L1 6089 6303 -1 5339 135 65 52 chrX 43184362 43184557 -119415373 - Tigger1 DNA MER2_type -2226 192 1 2137 68 61 4 chrX 43185124 43185403 -119414527 - AluY SINE Alu -16 295 1 399 217 0 0 chrX 43186333 43186416 -119413514 - L1ME LINE L1 -424 5697 5615 394 246 93 8 chrX 43186418 43186536 -119413394 - L2 LINE L2 -2 3311 3184 1807 154 20 0 chrX 43186555 43186848 -119413082 - AluJo SINE Alu -13 299 1 1980 124 0 4 chrX 43187323 43187597 -119412333 + AluSx SINE Alu 14 286 -26 198 103 0 0 chrX 43187597 43187626 -119412304 + (TA)n Simple_repeat Simple_repeat 1 29 0 3593 185 66 48 chrX 43187626 43188223 -119411707 + L1MD2 LINE L1 4678 5263 -1096 1862 146 3 23 chrX 43188223 43188524 -119411406 + AluSx SINE Alu 13 307 -5 3593 185 66 48 chrX 43188524 43189283 -119410647 + L1MD2 LINE L1 5263 6075 -284 2107 134 0 0 chrX 43189285 43189575 -119410355 - AluSx SINE Alu -22 290 1 2076 131 0 0 chrX 43190436 43190756 -119409174 + AluSp SINE Alu 2 321 0 2375 100 3 0 chrX 43191794 43192104 -119407826 - AluSp SINE Alu -2 311 1 531 224 9 14 chrX 43192380 43192598 -119407332 + L1MD2 LINE L1 6067 6344 -15 1476 115 20 0 chrX 43192612 43192812 -119407118 - AluJo SINE Alu -22 290 87 860 207 100 40 chrX 43192872 43193029 -119406901 + L1MEd LINE L1 894 1040 -5079 2320 108 10 0 chrX 43193029 43193334 -119406596 + AluSq SINE Alu 1 308 -5 860 207 100 40 chrX 43193334 43193476 -119406454 + L1MEd LINE L1 1040 1211 -4908 5286 176 79 70 chrX 43193870 43194025 -119405905 + L1M4 LINE L1 15 167 -6375 2211 78 18 7 chrX 43194025 43194301 -119405629 + AluSx SINE Alu 12 293 -19 1031 45 0 8 chrX 43194301 43194435 -119405495 + (GGAA)n Simple_repeat Simple_repeat 3 135 0 5286 176 79 70 chrX 43194441 43194765 -119405165 + L1M4 LINE L1 167 487 -6055 2350 105 0 25 chrX 43194765 43195080 -119404850 + AluSc SINE Alu 1 307 -2 5286 176 79 70 chrX 43195080 43195482 -119404448 + L1M4 LINE L1 487 884 -5658 1918 126 7 34 chrX 43195482 43195638 -119404292 - AluJb SINE Alu -26 286 127 216 0 0 0 chrX 43195638 43195662 -119404268 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2382 52 0 11 chrX 43195662 43195949 -119403981 - AluY SINE Alu -27 284 1 1918 126 7 34 chrX 43195949 43196085 -119403845 - AluJb SINE Alu -183 129 1 5286 176 79 70 chrX 43196085 43196326 -119403604 + L1M4 LINE L1 884 1155 -5387 2248 127 0 0 chrX 43196326 43196634 -119403296 - AluSx SINE Alu -4 308 1 5286 176 79 70 chrX 43196634 43196840 -119403090 + L1M4 LINE L1 1155 1358 -5184 1570 148 35 55 chrX 43196917 43197098 -119402832 - AluJo SINE Alu -16 296 121 2294 99 0 0 chrX 43197098 43197429 -119402501 + AluSx SINE Alu 1 331 0 1570 148 35 55 chrX 43197429 43197536 -119402394 - AluJo SINE Alu -191 121 13 361 261 18 0 chrX 43197626 43197737 -119402193 + L1M4 LINE L1 2334 2446 -4200 1208 180 174 47 chrX 43197738 43198055 -119401875 + MLT1A1 LTR MaLR 4 360 -5 572 137 29 10 chrX 43198092 43198194 -119401736 + L1MB7 LINE L1 4439 4542 -1604 * 1251 133 62 0 chrX 43198191 43198401 -119401529 + L1MB7 LINE L1 5821 6043 -141 1783 158 39 35 chrX 43198425 43198736 -119401194 - AluJo SINE Alu 0 312 1 1977 139 13 10 chrX 43199000 43199135 -119400795 + AluJb SINE Alu 1 134 -178 1945 100 0 76 chrX 43199135 43199475 -119400455 + AluSc SINE Alu 1 317 0 1977 139 13 10 chrX 43199475 43199552 -119400378 + AluJb SINE Alu 134 302 -10 500 153 47 0 chrX 43199552 43199637 -119400293 + AluJ/FRAM SINE Alu 214 302 -10 1939 140 0 4 chrX 43199654 43199954 -119399976 + AluJb SINE Alu 14 287 -25 306 0 0 0 chrX 43199962 43199996 -119399934 + (CA)n Simple_repeat Simple_repeat 2 35 0 333 244 70 0 chrX 43200016 43200102 -119399828 + L1MC/D LINE L1 5439 5530 -2278 548 295 75 18 chrX 43200103 43200381 -119399549 + L2 LINE L2 2879 3172 -141 1106 174 35 119 chrX 43200385 43200635 -119399295 - MER58B DNA MER1_type -2079 341 72 2078 97 62 0 chrX 43200635 43200925 -119399005 - AluSx SINE Alu -4 308 1 1662 141 51 14 chrX 43200927 43201203 -119398727 - AluJo SINE Alu -20 292 7 1106 174 35 119 chrX 43201203 43201293 -119398637 - MER58B DNA MER1_type -2349 71 27 549 200 61 9 chrX 43201304 43201419 -119398511 + L2 LINE L2 3193 3313 0 2010 128 3 3 chrX 43201423 43201720 -119398210 - AluSx SINE Alu -15 297 1 516 32 0 0 chrX 43202000 43202062 -119397868 + (TCC)n Simple_repeat Simple_repeat 1 62 0 241 234 21 32 chrX 43203871 43203965 -119395965 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 186 43 0 0 chrX 43204302 43204325 -119395605 + (CCCCAG)n Simple_repeat Simple_repeat 1 23 0 2204 90 3 16 chrX 43205669 43205979 -119393951 + AluSx SINE Alu 1 306 -6 2237 91 0 10 chrX 43206664 43206972 -119392958 + AluSx SINE Alu 1 305 -7 1067 93 0 0 chrX 43206972 43207112 -119392818 + AluSg/x SINE Alu 135 274 -38 914 73 40 7 chrX 43207118 43207269 -119392661 + GA-rich Low_complexity Low_complexity 2 157 0 1765 103 114 7 chrX 43207857 43208128 -119391802 + AluSg SINE Alu 1 300 -10 1163 111 12 0 chrX 43208128 43208290 -119391640 + AluSg/x SINE Alu 132 295 -15 243 0 0 0 chrX 43208654 43208681 -119391249 + (CA)n Simple_repeat Simple_repeat 1 27 0 355 264 28 22 chrX 43211363 43211541 -119388389 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 * 378 298 0 12 chrX 43211412 43211580 -119388350 + GA-rich Low_complexity Low_complexity 2 167 0 242 56 28 0 chrX 43214749 43214785 -119385145 + (TC)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chrX 43214785 43214805 -119385125 + (CA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chrX 43215268 43215288 -119384642 + (A)n Simple_repeat Simple_repeat 1 20 0 2268 92 0 10 chrX 43215299 43215602 -119384328 + AluSg SINE Alu 1 300 -10 671 267 64 11 chrX 43216658 43216845 -119383085 + MIR SINE MIR 59 255 -7 434 228 57 16 chrX 43217577 43217700 -119382230 - L2 LINE L2 -8 3305 3178 2151 122 0 0 chrX 43217702 43218006 -119381924 - AluSx SINE Alu -8 304 1 757 168 0 15 chrX 43218007 43218138 -119381792 - FLAM_A SINE Alu -4 129 1 1287 211 76 59 chrX 43218192 43218282 -119381648 - MER63B DNA MER1_type -634 428 341 1608 142 11 4 chrX 43218282 43218542 -119381388 - AluJb SINE Alu -15 297 36 1287 211 76 59 chrX 43218542 43218872 -119381058 - MER63B DNA MER1_type -721 341 1 351 333 33 13 chrX 43219037 43219187 -119380743 - MIR SINE MIR -69 193 41 256 193 0 18 chrX 43222118 43222175 -119377755 + GA-rich Low_complexity Low_complexity 2 57 0 1411 256 156 28 chrX 43222764 43222921 -119377009 - L2 LINE L2 -3 3310 3174 1540 167 51 0 chrX 43222921 43223197 -119376733 + AluJo SINE Alu 1 290 -22 1411 256 156 28 chrX 43223197 43223208 -119376722 - L2 LINE L2 -139 3174 3166 2357 78 0 0 chrX 43223208 43223501 -119376429 + AluSq SINE Alu 1 293 -20 1411 256 156 28 chrX 43223501 43224282 -119375648 - L2 LINE L2 -147 3166 2238 233 248 234 50 chrX 43225444 43225662 -119374268 - L2 LINE L2 -83 3230 2973 651 236 27 173 chrX 43226548 43226846 -119373084 - L2 LINE L2 -7 3306 3103 1594 171 77 0 chrX 43226846 43227132 -119372798 - AluJb SINE Alu -4 308 1 651 236 27 173 chrX 43227132 43227312 -119372618 - L2 LINE L2 -210 3103 2898 2098 125 3 0 chrX 43227420 43227715 -119372215 - AluSx SINE Alu -16 296 1 2176 85 0 28 chrX 43227715 43228034 -119371896 - AluSx SINE Alu -2 310 1 544 235 131 0 chrX 43228190 43228343 -119371587 + L1ME LINE L1 5470 5642 -528 2282 84 0 3 chrX 43228357 43228653 -119371277 + AluSx SINE Alu 1 295 -17 1026 162 0 32 chrX 43228876 43229061 -119370869 + AluJb SINE Alu 130 308 -4 1333 221 92 39 chrX 43229344 43229809 -119370121 + Charlie4a DNA MER1_type 1 490 -18 2292 84 0 0 chrX 43229809 43230105 -119369825 - AluSx SINE Alu -14 298 3 2238 96 3 0 chrX 43230155 43230447 -119369483 + AluSx SINE Alu 1 293 -19 813 216 106 26 chrX 43232405 43232434 -119367496 - L2 LINE L2 -338 2976 2951 2265 104 0 0 chrX 43232434 43232732 -119367198 + AluSx SINE Alu 1 298 -14 813 216 106 26 chrX 43232732 43232975 -119366955 - L2 LINE L2 -363 2951 2682 434 185 33 11 chrX 43232975 43233067 -119366863 + L1ME1 LINE L1 6062 6155 -11 956 211 0 0 chrX 43233104 43233284 -119366646 + AluJb SINE Alu 133 312 0 1644 205 57 54 chrX 43233459 43233845 -119366085 + MLT1B LTR MaLR 1 387 -3 203 338 0 0 chrX 43234732 43234806 -119365124 + (TG)n Simple_repeat Simple_repeat 1 74 0 459 125 0 0 chrX 43235301 43235373 -119364557 + (TG)n Simple_repeat Simple_repeat 2 73 0 2199 100 3 3 chrX 43236220 43236521 -119363409 + AluSp SINE Alu 1 301 -12 655 133 47 70 chrX 43237201 43237329 -119362601 - FRAM SINE Alu -7 169 45 585 268 32 21 chrX 43237428 43237618 -119362312 + MER91A DNA MER1_type 4 195 -1 1012 236 54 77 chrX 43237763 43238152 -119361778 + LTR37A LTR ERV1 6 345 -81 1952 133 0 7 chrX 43238152 43238453 -119361477 + AluJb SINE Alu 1 299 -13 1012 236 54 77 chrX 43238453 43238532 -119361398 + LTR37A LTR ERV1 345 424 -2 503 315 24 0 chrX 43238928 43239093 -119360837 + MIR SINE MIR 92 260 -2 248 287 61 26 chrX 43239361 43239476 -119360454 + MIR3 SINE MIR 64 182 -26 187 250 0 0 chrX 43239752 43239796 -119360134 + MIR3 SINE MIR 145 188 -20 807 265 146 58 chrX 43239888 43240374 -119359556 - MLT1K LTR MaLR 0 588 60 2294 97 3 0 chrX 43240376 43240685 -119359245 + AluSg SINE Alu 1 310 0 1509 160 106 0 chrX 43240689 43240971 -119358959 + AluJo SINE Alu 1 312 0 296 349 18 0 chrX 43241696 43241805 -119358125 + (CCCA)n Simple_repeat Simple_repeat 3 113 0 202 361 52 0 chrX 43241816 43241913 -119358017 - L2 LINE L2 -32 3240 3139 260 329 38 6 chrX 43241987 43242145 -119357785 - L2 LINE L2 -243 3029 2867 2170 105 7 7 chrX 43242157 43242463 -119357467 + AluSx SINE Alu 1 306 -6 2052 127 3 7 chrX 43242961 43243261 -119356669 + AluSx SINE Alu 1 299 -13 2290 80 3 0 chrX 43243711 43243999 -119355931 + AluSp SINE Alu 1 289 -24 186 43 0 0 chrX 43243999 43244022 -119355908 + (GA)n Simple_repeat Simple_repeat 2 24 0 1720 168 0 23 chrX 43244379 43244548 -119355382 - AluJo SINE Alu -10 302 142 2011 110 27 7 chrX 43244548 43244840 -119355090 - AluSx SINE Alu -14 298 1 1720 168 0 23 chrX 43244840 43244979 -119354951 - AluJo SINE Alu -170 142 1 333 143 18 0 chrX 43244979 43245035 -119354895 - L1M3 LINE L1 -744 5590 5534 1248 186 98 3 chrX 43245037 43245343 -119354587 - L1MC4a LINE L1 -1615 6193 5859 1113 67 0 0 chrX 43245343 43245478 -119354452 + AluSq/x SINE Alu 1 135 -178 1831 152 3 0 chrX 43245478 43245780 -119354150 + AluSx SINE Alu 1 303 -9 1190 229 39 10 chrX 43245780 43246086 -119353844 - L1MC4a LINE L1 -1939 5869 5555 405 0 0 0 chrX 43246271 43246316 -119353614 + (CA)n Simple_repeat Simple_repeat 1 45 0 206 234 0 0 chrX 43246335 43246382 -119353548 + MIR SINE MIR 98 144 -118 3053 160 44 23 chrX 43246496 43247059 -119352871 + MER90 LTR ERV1 1 575 0 311 337 47 1 chrX 43247160 43247280 -119352650 - MIR SINE MIR -65 143 30 1269 145 114 28 chrX 43247723 43247843 -119352087 + AluJo SINE Alu 1 109 -203 2153 75 7 36 chrX 43247843 43248149 -119351781 - AluSx SINE Alu -15 297 1 1269 145 114 28 chrX 43248149 43248283 -119351647 + AluJo SINE Alu 109 277 -35 2135 102 3 0 chrX 43248318 43248642 -119351288 + AluSx SINE Alu 1 312 0 189 0 0 0 chrX 43248655 43248676 -119351254 + (GA)n Simple_repeat Simple_repeat 2 22 0 815 172 96 20 chrX 43248677 43248875 -119351055 + L1MC4 LINE L1 7102 7314 -728 1442 171 91 0 chrX 43248875 43249139 -119350791 + AluJo SINE Alu 14 301 -11 * 1655 250 63 27 chrX 43249137 43249736 -119350194 + L1MC4 LINE L1 7303 7923 -119 406 208 61 99 chrX 43250007 43250219 -119349711 - L1MC4a LINE L1 -707 5463 5260 184 319 14 14 chrX 43250667 43250739 -119349191 - MIR SINE MIR -55 153 82 180 0 0 0 chrX 43251028 43251048 -119348882 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2112 105 44 7 chrX 43251065 43251361 -119348569 - AluSq SINE Alu -6 307 1 1958 104 71 4 chrX 43251361 43251641 -119348289 - AluSq SINE Alu -14 299 1 206 226 19 0 chrX 43252223 43252276 -119347654 + C-rich Low_complexity Low_complexity 2 55 0 23 0 0 0 chrX 43252285 43252308 -119347622 + GC_rich Low_complexity Low_complexity 1 23 0 205 365 11 11 chrX 43253312 43253490 -119346440 + (CATAC)n Simple_repeat Simple_repeat 3 180 0 212 186 17 0 chrX 43253491 43253550 -119346380 + (CATGC)n Simple_repeat Simple_repeat 2 61 0 572 263 128 25 chrX 43253972 43254082 -119345848 - L1MC4 LINE L1 0 8042 7945 585 64 0 0 chrX 43254082 43254160 -119345770 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 572 263 128 25 chrX 43254160 43254369 -119345561 - L1MC4 LINE L1 -97 7945 7690 435 217 0 0 chrX 43254527 43254633 -119345297 + CT-rich Low_complexity Low_complexity 1 106 0 262 283 120 0 chrX 43256907 43256999 -119342931 - MIR SINE MIR -140 122 20 1960 215 101 29 chrX 43258019 43258939 -119340991 - L2 LINE L2 -1 3312 2331 1063 236 109 36 chrX 43259690 43260130 -119339800 - L2 LINE L2 0 3313 2842 2144 108 24 3 chrX 43260882 43261169 -119338761 + AluSx SINE Alu 1 293 -19 1919 131 21 18 chrX 43261263 43261546 -119338384 - AluJo SINE Alu -14 298 15 41 0 0 19 chrX 43261552 43261580 -119338350 + AT_rich Low_complexity Low_complexity 1 29 -22 2335 94 0 0 chrX 43261580 43261867 -119338063 - AluSp SINE Alu -26 287 1 41 0 0 19 chrX 43261867 43261890 -119338040 + AT_rich Low_complexity Low_complexity 29 51 0 1151 170 16 0 chrX 43262157 43262339 -119337591 - AluJo SINE Alu -8 304 120 918 91 0 0 chrX 43262487 43262597 -119337333 - AluSq/x SINE Alu -196 116 7 294 280 216 30 chrX 43262651 43262887 -119337043 - L1MC4a LINE L1 -1844 5964 5685 526 238 189 34 chrX 43262944 43263060 -119336870 - L1MC4a LINE L1 -2246 5562 5465 2292 109 0 3 chrX 43263060 43263362 -119336568 + AluSx SINE Alu 1 301 -11 526 238 189 34 chrX 43263362 43263510 -119336420 - L1MC4a LINE L1 -2343 5465 5257 225 0 0 0 chrX 43263944 43263969 -119335961 + (CA)n Simple_repeat Simple_repeat 2 26 0 2447 103 0 0 chrX 43266007 43266319 -119333611 - AluSx SINE Alu 0 312 1 1312 191 77 4 chrX 43266319 43266591 -119333339 - AluJo SINE Alu -20 292 1 2523 67 0 0 chrX 43266619 43266917 -119333013 + AluY SINE Alu 1 298 -13 455 280 77 7 chrX 43266938 43267081 -119332849 - L1MEc LINE L1 -4096 2300 2148 37 23 0 0 chrX 43267513 43267557 -119332373 + AT_rich Low_complexity Low_complexity 1 44 0 1144 89 0 0 chrX 43267557 43267692 -119332238 + AluSq/x SINE Alu 1 135 -178 2350 90 0 0 chrX 43267692 43267982 -119331948 + AluSg SINE Alu 1 290 -20 1847 159 0 20 chrX 43268045 43268341 -119331589 - AluJo SINE Alu -22 290 1 252 292 292 0 chrX 43268501 43268614 -119331316 + MIR SINE MIR 117 262 0 379 291 87 67 chrX 43268618 43268720 -119331210 - L1MC4a LINE L1 -1865 5943 5844 1878 141 0 39 chrX 43268720 43269025 -119330905 - AluJo SINE Alu -19 293 1 379 291 87 67 chrX 43269025 43269151 -119330779 - L1MC4a LINE L1 -1964 5844 5707 2373 104 0 7 chrX 43269151 43269460 -119330470 + AluSq SINE Alu 1 307 -6 379 291 87 67 chrX 43269460 43269484 -119330446 - L1MC4a LINE L1 -2101 5707 5685 752 193 20 25 chrX 43269498 43269677 -119330253 - L1MC4a LINE L1 -687 5483 5304 1795 167 40 3 chrX 43269677 43269977 -119329953 - AluJo SINE Alu 0 312 2 752 193 20 25 chrX 43269977 43269994 -119329936 - L1MC4a LINE L1 -866 5304 5288 266 351 66 20 chrX 43270101 43270252 -119329678 - MIR SINE MIR -11 251 94 2063 148 0 0 chrX 43270962 43271252 -119328678 - AluJb SINE Alu -22 290 1 896 158 79 0 chrX 43272268 43272432 -119327498 - MLT1B LTR MaLR -12 378 202 1790 155 11 3 chrX 43272478 43272762 -119327168 - AluJb SINE Alu -6 306 21 2387 102 3 0 chrX 43272780 43273084 -119326846 - AluSp SINE Alu -7 306 2 822 181 0 0 chrX 43273088 43273221 -119326709 - FLAM_A SINE Alu 0 133 1 563 167 220 23 chrX 43273250 43273382 -119326548 + AluJb SINE Alu 83 240 -72 1971 134 39 11 chrX 43273428 43273712 -119326218 + AluSx SINE Alu 1 292 -20 962 139 13 6 chrX 43273717 43273875 -119326055 - MLT1B LTR MaLR -231 159 1 276 194 45 15 chrX 43273880 43273947 -119325983 - MLT1A1-int LTR MaLR -2 1733 1665 492 158 0 0 chrX 43273952 43274034 -119325896 - AluSg/x SINE Alu -13 296 215 716 157 0 0 chrX 43274034 43274142 -119325788 - AluSq/x SINE Alu -200 113 6 3164 205 46 89 chrX 43274160 43274397 -119325533 - MLT1A1-int LTR MaLR -81 1290 1044 1943 158 0 0 chrX 43274397 43274688 -119325242 + AluJb SINE Alu 3 293 -19 3164 205 46 89 chrX 43274688 43275550 -119324380 - MLT1A1-int LTR MaLR -327 1044 132 1749 144 111 15 chrX 43275550 43275883 -119324047 - MLT1A1 LTR MaLR 0 365 1 3164 205 46 89 chrX 43275883 43276010 -119323920 - MLT1A1-int LTR MaLR -1239 132 1 1935 175 48 13 chrX 43276010 43276387 -119323543 - MLT1B LTR MaLR 0 390 1 1624 182 30 69 chrX 43277170 43277576 -119322354 - MLT1B LTR MaLR 0 390 1 2257 101 0 10 chrX 43278440 43278737 -119321193 + AluSq SINE Alu 1 294 -19 327 301 65 13 chrX 43278826 43278979 -119320951 + L2 LINE L2 2798 2958 -356 387 248 45 45 chrX 43278992 43279064 -119320866 + MIR SINE MIR 86 160 -102 1529 153 78 98 chrX 43279064 43279437 -119320493 + MSTC LTR MaLR 1 365 -63 1536 172 23 8 chrX 43279437 43279699 -119320231 - AluJo SINE Alu -9 303 38 1529 153 78 98 chrX 43279699 43279762 -119320168 + MSTC LTR MaLR 365 428 0 387 248 45 45 chrX 43279762 43279822 -119320108 + MIR SINE MIR 159 218 -44 184 265 0 0 chrX 43279869 43279918 -119320012 + L2 LINE L2 2601 2649 -665 2490 63 0 16 chrX 43280385 43280700 -119319230 - AluY SINE Alu -1 310 1 1908 157 0 17 chrX 43280930 43281230 -119318700 - AluJo SINE Alu -17 295 1 350 278 103 24 chrX 43281335 43281461 -119318469 + LTR33 LTR ERVL 3 138 -383 335 158 12 37 chrX 43281888 43281970 -119317960 - L1ME3A LINE L1 -5 6165 6086 1904 125 10 7 chrX 43282024 43282313 -119317617 - AluJo SINE Alu -22 290 1 2050 134 3 7 chrX 43282338 43282637 -119317293 + AluJo SINE Alu 3 300 -12 639 279 70 12 chrX 43283751 43283995 -119315935 - L2 LINE L2 -246 3067 2810 238 342 13 0 chrX 43284025 43284101 -119315829 - L2 LINE L2 -685 2629 2553 191 308 26 0 chrX 43284175 43284253 -119315677 - L2 LINE L2 -273 2999 2920 255 263 13 0 chrX 43284550 43284626 -119315304 + L2 LINE L2 2790 2866 -448 1852 109 64 36 chrX 43284932 43285073 -119314857 + MER44D DNA MER2_type 1 137 -2354 2162 131 19 38 chrX 43285073 43285363 -119314567 + MER47A DNA MER2_type 1 295 -2028 1705 123 99 44 chrX 43285363 43285512 -119314418 - AluSx SINE Alu -3 309 170 2289 113 3 0 chrX 43285512 43285814 -119314116 - AluSq SINE Alu -10 303 1 1842 138 87 7 chrX 43285822 43286111 -119313819 - AluSx SINE Alu 0 312 1 1705 123 99 44 chrX 43286111 43286245 -119313685 - AluSx SINE Alu -148 164 1 2162 131 19 38 chrX 43286245 43286327 -119313603 + MER47A DNA MER2_type 295 366 0 1852 109 64 36 chrX 43286327 43286515 -119313415 + MER44D DNA MER2_type 137 609 0 553 226 19 138 chrX 43286518 43286593 -119313337 - L1MC/D LINE L1 -2143 5665 5583 2309 83 7 3 chrX 43286593 43286881 -119313049 - AluSc SINE Alu -20 289 1 553 226 19 138 chrX 43286881 43286949 -119312981 - L1MC/D LINE L1 -2225 5583 5564 2518 68 0 0 chrX 43286949 43287245 -119312685 + AluY SINE Alu 1 296 -15 553 226 19 138 chrX 43287245 43287361 -119312569 - L1MC/D LINE L1 -2244 5564 5436 2376 96 0 10 chrX 43287666 43287967 -119311963 - AluSx SINE Alu -14 298 1 259 267 41 82 chrX 43288504 43288650 -119311280 + MIR SINE MIR 113 252 -10 204 279 44 0 chrX 43288828 43288896 -119311034 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 728 237 77 55 chrX 43288979 43289055 -119310875 + L1MC4 LINE L1 7704 7777 -265 1406 164 95 78 chrX 43289055 43289275 -119310655 - MLT1A1 LTR MaLR 0 365 150 2442 86 0 10 chrX 43289275 43289576 -119310354 + AluSx SINE Alu 2 299 -13 2593 71 0 0 chrX 43289578 43289889 -119310041 + AluY SINE Alu 1 311 0 1406 164 95 78 chrX 43289889 43290024 -119309906 - MLT1A1 LTR MaLR -215 150 1 728 237 77 55 chrX 43290024 43290272 -119309658 + L1MC4 LINE L1 7777 8035 -7 821 225 72 36 chrX 43290365 43290614 -119309316 - MIR SINE MIR -1 261 4 224 170 19 19 chrX 43290653 43290706 -119309224 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 295 278 52 0 chrX 43290755 43290852 -119309078 + MIR SINE MIR 65 166 -96 2469 76 0 3 chrX 43291001 43291302 -119308628 + AluSx SINE Alu 1 300 -12 444 278 41 115 chrX 43291339 43291459 -119308471 - L1MC/D LINE L1 -1312 4834 4743 2132 142 0 0 chrX 43291459 43291762 -119308168 - AluJb SINE Alu -9 303 1 444 278 41 115 chrX 43291762 43291911 -119308019 - L1MC/D LINE L1 -1403 4743 4585 1846 143 50 0 chrX 43292402 43292682 -119307248 - AluJb SINE Alu -18 294 1 2158 114 4 0 chrX 43292867 43293147 -119306783 - AluSq SINE Alu -32 281 1 2271 133 0 0 chrX 43293324 43293633 -119306297 - AluSq SINE Alu -4 309 1 356 294 11 53 chrX 43293635 43293822 -119306108 - L1M4 LINE L1 -1226 4920 4742 1293 35 0 0 chrX 43293826 43293969 -119305961 - AluY SINE Alu -15 296 154 264 258 60 40 chrX 43293983 43294008 -119305922 - L1M4 LINE L1 -1430 4716 4693 2535 74 0 0 chrX 43294008 43294305 -119305625 - AluY SINE Alu -14 297 1 264 258 60 40 chrX 43294305 43294430 -119305500 - L1M4 LINE L1 -1453 4693 4563 805 196 15 49 chrX 43294446 43294650 -119305280 - MER46C DNA MER2_type -66 272 76 236 77 26 0 chrX 43294663 43294702 -119305228 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2235 79 4 0 chrX 43294705 43294971 -119304959 - AluSc SINE Alu -42 267 1 2168 92 27 20 chrX 43294971 43295266 -119304664 - AluSg SINE Alu -13 297 1 468 307 62 11 chrX 43295297 43295476 -119304454 - L1M4 LINE L1 -3728 2418 2231 1287 103 0 0 chrX 43295535 43295700 -119304230 - AluSg/x SINE Alu -14 296 132 2342 94 10 0 chrX 43295700 43295997 -119303933 - AluY SINE Alu -11 300 1 2244 125 0 0 chrX 43296140 43296436 -119303494 - AluSx SINE Alu -16 296 1 202 77 96 0 chrX 43296570 43296622 -119303308 + (TA)n Simple_repeat Simple_repeat 1 57 0 387 310 83 45 chrX 43296713 43296955 -119302975 - HAL1 LINE L1 -824 1683 1433 1858 132 14 24 chrX 43296957 43297245 -119302685 - AluJb SINE Alu -2 310 26 2423 92 0 0 chrX 43297245 43297539 -119302391 + AluSx SINE Alu 1 294 -18 259 138 0 102 chrX 43297540 43297599 -119302331 - AluJb SINE Alu -266 36 1 2294 106 0 32 chrX 43297614 43297925 -119302005 + AluSx SINE Alu 1 301 -11 383 305 28 7 chrX 43297995 43298136 -119301794 - HAL1 LINE L1 -1187 1320 1177 844 277 66 25 chrX 43298248 43298642 -119301288 - L2 LINE L2 -594 2720 2311 231 233 17 0 chrX 43298747 43298807 -119301123 - MLT1J LTR MaLR -45 466 406 402 77 0 0 chrX 43298817 43298869 -119301061 + AluSx SINE Alu 1 52 -248 4209 180 28 57 chrX 43298869 43299867 -119300063 - LTR5 LTR ERVK 0 969 1 1794 98 41 4 chrX 43299869 43300115 -119299815 + AluSx SINE Alu 50 304 -8 2044 118 17 10 chrX 43300293 43300589 -119299341 + AluJo SINE Alu 1 298 -14 2121 112 0 14 chrX 43300590 43300708 -119299222 + AluSx SINE Alu 19 137 -175 2370 101 3 0 chrX 43300708 43301006 -119298924 + AluSp SINE Alu 1 299 -14 2121 112 0 14 chrX 43301006 43301172 -119298758 + AluSx SINE Alu 137 299 -13 2276 113 0 3 chrX 43301174 43301476 -119298454 + AluSx SINE Alu 1 301 -11 334 313 31 16 chrX 43301534 43301662 -119298268 + MIR SINE MIR 28 157 -105 596 328 43 4 chrX 43301705 43301940 -119297990 + MIR SINE MIR 19 262 0 256 246 0 0 chrX 43301957 43302018 -119297912 + MIR SINE MIR 201 261 -1 397 204 41 0 chrX 43305050 43305148 -119294782 - U13 snRNA snRNA -2 102 1 591 122 0 0 chrX 43305507 43305589 -119294341 - 5S rRNA rRNA -39 82 1 2402 84 7 0 chrX 43306572 43306869 -119293061 - AluSx SINE Alu -13 299 1 1901 215 104 10 chrX 43307199 43307260 -119292670 - MLT1F LTR MaLR -8 534 480 2279 105 10 3 chrX 43307260 43307566 -119292364 + AluSx SINE Alu 1 308 -4 1901 215 104 10 chrX 43307566 43307992 -119291938 - MLT1F LTR MaLR -62 480 1 24 32 0 0 chrX 43308036 43308067 -119291863 + AT_rich Low_complexity Low_complexity 1 31 0 2091 99 3 20 chrX 43308081 43308375 -119291555 + AluSc SINE Alu 1 289 -20 1815 157 19 32 chrX 43308460 43308773 -119291157 + AluJb SINE Alu 1 309 -3 2499 50 0 50 chrX 43308915 43309234 -119290696 + AluY SINE Alu 1 303 -8 1347 65 0 60 chrX 43309234 43309419 -119290511 + AluY SINE Alu 133 306 -5 2147 124 14 0 chrX 43309491 43309781 -119290149 + AluSx SINE Alu 1 294 -18 2325 104 3 16 chrX 43309896 43310203 -119289727 + AluSx SINE Alu 1 303 -9 1043 91 0 8 chrX 43310205 43310337 -119289593 + AluSq/x SINE Alu 3 133 -179 2105 93 50 0 chrX 43310347 43310627 -119289303 + AluSx SINE Alu 5 298 -14 797 281 103 58 chrX 43310627 43311249 -119288681 + L1 LINE L1 3200 3860 -2286 2379 102 0 0 chrX 43311249 43311552 -119288378 + AluSg SINE Alu 1 303 -7 797 281 103 58 chrX 43311552 43311649 -119288281 + L1 LINE L1 3860 3951 -2195 900 175 0 0 chrX 43311659 43311796 -119288134 + FLAM_C SINE Alu 1 137 -6 311 260 107 92 chrX 43311796 43311878 -119288052 + L1 LINE L1 3956 4035 -2111 2360 101 0 3 chrX 43311878 43312175 -119287755 - AluSq SINE Alu -17 296 1 311 260 107 92 chrX 43312175 43312361 -119287569 + L1 LINE L1 4035 4217 -1929 2568 78 0 0 chrX 43312361 43312670 -119287260 + AluY SINE Alu 1 309 -2 311 260 107 92 chrX 43312670 43312709 -119287221 + L1 LINE L1 4217 4254 -1892 2335 91 0 7 chrX 43312709 43313007 -119286923 + AluSq SINE Alu 1 296 -17 311 260 107 92 chrX 43313007 43313109 -119286821 + L1 LINE L1 4254 4373 -1773 1654 211 112 19 chrX 43313234 43313719 -119286211 - MLT1F LTR MaLR -23 519 1 2348 96 3 0 chrX 43313744 43314035 -119285895 + AluSp SINE Alu 1 292 -21 1151 129 6 0 chrX 43314093 43314256 -119285674 - FRAM SINE Alu -12 164 1 1958 73 84 25 chrX 43314478 43314752 -119285178 + AluY SINE Alu 1 290 -21 1854 52 9 0 chrX 43314752 43314964 -119284966 + AluSc SINE Alu 80 294 -15 409 240 174 0 chrX 43314972 43315093 -119284837 + FLAM_A SINE Alu 1 142 0 616 303 89 7 chrX 43315108 43315300 -119284630 + L1 LINE L1 4821 4996 -1150 2390 109 0 0 chrX 43315300 43315613 -119284317 + AluSq SINE Alu 1 313 0 616 303 89 7 chrX 43315613 43315672 -119284258 + L1 LINE L1 4996 5049 -1097 2343 101 0 0 chrX 43315672 43315960 -119283970 + AluSg SINE Alu 1 288 -22 616 303 89 7 chrX 43315960 43316137 -119283793 + L1 LINE L1 5049 5308 -838 2328 89 0 30 chrX 43316428 43316732 -119283198 - AluSg SINE Alu -14 296 2 1982 71 0 78 chrX 43316830 43317113 -119282817 - AluSg SINE Alu -49 261 1 1643 95 9 0 chrX 43321223 43321433 -119278497 + AluSg/x SINE Alu 83 294 -16 1987 88 8 0 chrX 43321672 43321923 -119278007 + AluSx SINE Alu 42 294 -18 200 329 13 13 chrX 43322230 43322306 -119277624 + MIR SINE MIR 36 111 -151 291 279 54 9 chrX 43323656 43323734 -119276196 + MIR SINE MIR 104 190 -72 2261 107 10 0 chrX 43323734 43324033 -119275897 - AluSx SINE Alu -10 302 1 291 279 54 9 chrX 43324033 43324065 -119275865 + MIR SINE MIR 190 219 -43 399 203 220 0 chrX 43324295 43324413 -119275517 + MER46C DNA MER2_type 86 229 -109 679 216 91 143 chrX 43324549 43324662 -119275268 - LTR47B LTR ERVL -5 438 321 2069 115 14 3 chrX 43324662 43324949 -119274981 + AluSx SINE Alu 1 290 -22 679 216 91 143 chrX 43324949 43325177 -119274753 - LTR47B LTR ERVL -122 321 125 2210 52 0 4 chrX 43325177 43325444 -119274486 - AluY SINE Alu -45 266 1 679 216 91 143 chrX 43325444 43325563 -119274367 - LTR47B LTR ERVL -318 125 1 2241 111 3 0 chrX 43325646 43325943 -119273987 + AluSx SINE Alu 1 298 -14 1403 172 55 65 chrX 43326695 43327011 -119272919 + AluJb SINE Alu 1 313 0 1832 178 3 25 chrX 43327098 43327413 -119272517 - AluJb SINE Alu -4 308 1 4899 167 62 35 chrX 43327474 43327538 -119272392 - L1MA9 LINE L1 0 6312 6251 2373 90 0 3 chrX 43327538 43327837 -119272093 + AluSx SINE Alu 1 298 -14 4899 167 62 35 chrX 43327837 43328444 -119271486 - L1MA9 LINE L1 -61 6251 5662 2427 82 13 0 chrX 43328444 43328748 -119271182 - AluY SINE Alu -1 310 3 4899 167 62 35 chrX 43328748 43328854 -119271076 - L1MA9 LINE L1 -650 5662 5560 2145 154 0 0 chrX 43328854 43329166 -119270764 - AluSx SINE Alu 0 312 1 4899 167 62 35 chrX 43329166 43329522 -119270408 - L1MA9 LINE L1 -752 5560 5215 2077 100 46 4 chrX 43329522 43329802 -119270128 - AluSx SINE Alu -20 292 1 4899 167 62 35 chrX 43329802 43330064 -119269866 - L1MA9 LINE L1 -1097 5215 4872 2203 82 0 41 chrX 43330064 43330355 -119269575 + AluSg SINE Alu 1 279 -31 4899 167 62 35 chrX 43330355 43330415 -119269515 - L1MA9 LINE L1 -1440 4872 4815 290 119 0 0 chrX 43330450 43330492 -119269438 - MER57A LTR ERV1 -67 336 295 315 71 0 0 chrX 43330525 43330567 -119269363 + (TG)n Simple_repeat Simple_repeat 2 43 0 990 163 0 19 chrX 43330573 43330716 -119269214 - AluJo SINE Alu -35 277 136 2359 82 10 0 chrX 43330716 43331010 -119268920 - AluSp SINE Alu -16 297 1 990 163 0 19 chrX 43331010 43331026 -119268904 - AluJo SINE Alu -176 136 121 717 87 63 0 chrX 43331026 43331153 -119268777 - L1MA2 LINE L1 -172 6132 5998 * 1080 184 179 25 chrX 43331151 43331222 -119268708 - L1MA9 LINE L1 -2471 3675 3616 2141 118 17 7 chrX 43331222 43331519 -119268411 - AluSx SINE Alu -12 300 1 1080 184 179 25 chrX 43331519 43331687 -119268243 - L1MA9 LINE L1 -2530 3616 3475 2037 155 0 3 chrX 43331687 43331984 -119267946 - AluJb SINE Alu -15 297 2 1080 184 179 25 chrX 43331984 43332211 -119267719 - L1MA9 LINE L1 -2671 3475 3038 1786 138 0 4 chrX 43332213 43332474 -119267456 - AluJo SINE Alu 0 312 53 2258 85 31 3 chrX 43332474 43332767 -119267163 + AluSx SINE Alu 1 302 -10 399 131 0 16 chrX 43332771 43332832 -119267098 - AluJo SINE Alu -242 60 1 549 217 7 7 chrX 43332832 43332975 -119266955 - L1MA9 LINE L1 -3267 2879 2737 258 347 93 0 chrX 43333011 43333204 -119266726 - L2 LINE L2 -131 3182 2972 1627 237 125 6 chrX 43333214 43333686 -119266244 + REP3 LTR ERV 6 533 -29 1501 185 108 16 chrX 43333697 43334134 -119265796 - L2 LINE L2 -340 2974 2498 787 240 20 80 chrX 43334219 43334429 -119265501 + MIR SINE MIR 7 228 -34 2240 106 14 0 chrX 43334429 43334721 -119265209 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 43334724 43334747 -119265183 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 787 240 20 80 chrX 43334747 43334782 -119265148 + MIR SINE MIR 230 241 -21 201 333 0 0 chrX 43334889 43334973 -119264957 - L2 LINE L2 -421 2893 2810 1103 76 0 0 chrX 43335181 43335338 -119264592 + L1PA8 LINE L1 6016 6172 0 308 263 223 17 chrX 43335364 43335539 -119264391 + MIR SINE MIR 48 258 -4 349 284 20 0 chrX 43335539 43335641 -119264289 + L1M4 LINE L1 3787 3890 -2256 2175 114 7 0 chrX 43335929 43336219 -119263711 - AluSx SINE Alu -20 292 1 1408 171 13 0 chrX 43336815 43337049 -119262881 - AluJb SINE Alu 0 312 76 230 229 0 16 chrX 43337050 43337111 -119262819 + L1M4 LINE L1 108 167 -6375 1484 117 15 0 chrX 43337111 43337317 -119262613 + AluSx SINE Alu 12 220 -92 661 119 0 0 chrX 43337319 43337420 -119262510 - AluS SINE Alu -211 102 2 32 26 0 0 chrX 43337477 43337516 -119262414 + AT_rich Low_complexity Low_complexity 1 39 0 663 148 0 90 chrX 43337768 43337923 -119262007 + FLAM_C SINE Alu 2 142 -1 1726 177 37 0 chrX 43337929 43338200 -119261730 - AluJb SINE Alu -31 281 1 2339 98 0 7 chrX 43338219 43338525 -119261405 - AluSq SINE Alu -9 304 1 2018 131 42 0 chrX 43338527 43338810 -119261120 - AluJb SINE Alu -15 297 3 207 0 0 0 chrX 43338825 43338848 -119261082 + (A)n Simple_repeat Simple_repeat 1 23 0 526 200 26 61 chrX 43338873 43338965 -119260965 + MIR SINE MIR 100 184 -78 2144 132 3 0 chrX 43338965 43339260 -119260670 + AluSx SINE Alu 1 296 -16 526 200 26 61 chrX 43339260 43339337 -119260593 + MIR SINE MIR 184 262 0 2603 64 0 3 chrX 43339734 43340046 -119259884 + AluY SINE Alu 1 311 0 2423 93 0 0 chrX 43340255 43340557 -119259373 - AluSq SINE Alu -11 302 1 231 256 141 0 chrX 43342334 43342412 -119257518 - L2 LINE L2 -3 3310 3222 305 331 113 0 chrX 43342475 43342617 -119257313 - L2 LINE L2 -632 2682 2525 2156 57 49 0 chrX 43344144 43344408 -119255522 + AluY SINE Alu 1 277 -34 205 182 0 0 chrX 43345636 43345669 -119254261 + (TAG)n Simple_repeat Simple_repeat 2 34 0 614 234 28 7 chrX 43345674 43345819 -119254111 - MIR SINE MIR -12 250 103 183 205 0 0 chrX 43345842 43345881 -119254049 + CT-rich Low_complexity Low_complexity 2 40 0 520 297 67 0 chrX 43345937 43346102 -119253828 + MER5B DNA MER1_type 3 178 0 1787 168 17 17 chrX 43346350 43346647 -119253283 - AluJo SINE Alu -15 297 1 2380 105 0 0 chrX 43346695 43347001 -119252929 + AluSx SINE Alu 1 306 -6 1198 107 18 24 chrX 43347317 43347485 -119252445 + AluJb SINE Alu 133 299 -13 252 114 0 0 chrX 43347901 43347936 -119251994 - U2 snRNA snRNA -153 35 1 263 231 0 0 chrX 43348559 43348611 -119251319 - L2 LINE L2 0 3272 3221 1017 233 163 30 chrX 43348628 43348901 -119251029 - L2 LINE L2 0 3313 3078 2213 116 7 0 chrX 43348901 43349193 -119250737 - AluJo SINE Alu -18 294 1 1017 233 163 30 chrX 43349193 43349592 -119250338 - L2 LINE L2 -235 3078 2563 1504 214 16 23 chrX 43350370 43350679 -119249251 - MER68 LTR ERV1 0 562 256 1873 114 0 0 chrX 43350721 43350984 -119248946 - AluSx SINE Alu -35 277 15 1513 130 7 74 chrX 43351000 43351097 -119248833 - MER68 LTR ERV1 -297 265 163 2295 76 0 10 chrX 43351097 43351400 -119248530 - AluSc SINE Alu -9 300 1 1513 130 7 74 chrX 43351400 43351442 -119248488 - MER68 LTR ERV1 -399 163 120 1858 138 33 7 chrX 43351442 43351746 -119248184 - AluJb SINE Alu 0 312 1 1513 130 7 74 chrX 43351746 43351889 -119248041 - MER68 LTR ERV1 -442 120 1 2335 73 0 3 chrX 43352387 43352690 -119247240 + AluY SINE Alu 1 302 -9 2236 78 24 0 chrX 43352691 43352985 -119246945 + AluSc SINE Alu 1 301 -8 2177 89 3 3 chrX 43353294 43353585 -119246345 + AluSp SINE Alu 1 291 -22 2307 62 0 13 chrX 43353726 43354030 -119245900 - AluY SINE Alu -11 300 1 2149 89 0 0 chrX 43354085 43354393 -119245537 - AluSx SINE Alu 0 308 1 2397 71 0 3 chrX 43354641 43354951 -119244979 - AluSc SINE Alu 0 309 1 1125 102 0 6 chrX 43355822 43355979 -119243951 - AluSg/x SINE Alu -14 296 141 2187 97 7 0 chrX 43355985 43356284 -119243646 - AluSx SINE Alu -11 301 1 2014 113 0 3 chrX 43356394 43356694 -119243236 - AluSx SINE Alu -9 303 5 2412 69 0 0 chrX 43357448 43357752 -119242178 - AluSc SINE Alu -5 304 1 1959 121 7 7 chrX 43357823 43358104 -119241826 + AluSx SINE Alu 14 294 -18 441 156 0 44 chrX 43358748 43358838 -119241092 + AluJ/FRAM SINE Alu 226 311 -1 2046 136 7 0 chrX 43359104 43359412 -119240518 - AluSx SINE Alu -2 310 1 751 169 0 37 chrX 43359563 43359699 -119240231 - FLAM_A SINE Alu -2 131 1 514 246 135 8 chrX 43360012 43360342 -119239588 - LTR16A LTR ERVL 0 450 17 1956 112 25 3 chrX 43360343 43360628 -119239302 - AluSx SINE Alu -21 291 1 293 280 15 61 chrX 43360671 43360803 -119239127 + MIR3 SINE MIR 7 132 -76 465 229 92 0 chrX 43360833 43360942 -119238988 - L2 LINE L2 0 3313 3195 388 233 0 70 chrX 43361546 43361675 -119238255 + MER31-int LTR ERV1 1159 1278 -3658 302 176 29 69 chrX 43361784 43361886 -119238044 + MER31-int LTR ERV1 1290 1387 -3549 1876 162 0 0 chrX 43361891 43362199 -119237731 + AluJb SINE Alu 5 312 0 324 279 6 45 chrX 43362461 43362640 -119237290 + MER31-int LTR ERV1 1700 1871 -3065 1860 141 0 43 chrX 43362649 43362817 -119237113 - AluJb SINE Alu -10 292 118 1805 140 0 20 chrX 43362817 43362979 -119236951 - AluJb SINE Alu -18 294 139 2136 90 10 0 chrX 43362979 43363169 -119236761 - AluY SINE Alu 0 311 122 198 0 0 0 chrX 43363169 43363191 -119236739 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2136 90 10 0 chrX 43363191 43363315 -119236615 - AluY SINE Alu -189 122 1 1805 140 0 20 chrX 43363315 43363452 -119236478 - AluJb SINE Alu -173 139 1 1860 141 0 43 chrX 43363452 43363588 -119236342 - AluJb SINE Alu -184 118 1 663 179 49 12 chrX 43363790 43363952 -119235978 - Charlie1 DNA MER1_type -34 2727 2560 531 88 0 0 chrX 43363955 43364023 -119235907 + AluJ/FLAM SINE Alu 2 69 -243 1022 162 13 66 chrX 43364216 43364444 -119235486 + AluJo SINE Alu 89 304 -8 2256 70 0 10 chrX 43364648 43364946 -119234984 - AluSg SINE Alu -15 295 1 1777 129 7 4 chrX 43365072 43365351 -119234579 - AluSx SINE Alu -32 280 1 2332 76 0 10 chrX 43365353 43365655 -119234275 - AluSx SINE Alu -13 299 1 2154 89 0 0 chrX 43365682 43365987 -119233943 - AluY SINE Alu 0 305 1 2337 90 0 3 chrX 43366162 43366472 -119233458 - AluSx SINE Alu -3 309 1 2104 109 0 7 chrX 43366472 43366765 -119233165 - AluSx SINE Alu -21 291 1 744 134 126 0 chrX 43366951 43367070 -119232860 + AluSq/x SINE Alu 3 136 -176 2131 115 0 13 chrX 43367070 43367374 -119232556 + AluSx SINE Alu 1 300 -12 2054 99 25 0 chrX 43367377 43367688 -119232242 + AluSx SINE Alu 1 318 0 1562 153 50 21 chrX 43367798 43368080 -119231850 + AluJb SINE Alu 9 298 -14 215 355 0 16 chrX 43368255 43368317 -119231613 - MER5A DNA MER1_type -16 173 113 215 375 0 14 chrX 43368259 43368331 -119231599 + MER5B DNA MER1_type 21 91 -87 1810 164 3 6 chrX 43368436 43368748 -119231182 + AluJb SINE Alu 1 311 -1 2127 113 3 3 chrX 43368830 43369140 -119230790 + AluSx SINE Alu 1 310 -2 2086 114 3 7 chrX 43369141 43369448 -119230482 + AluSx SINE Alu 1 306 -6 1219 220 134 67 chrX 43369498 43369962 -119229968 - MLT1F LTR MaLR -47 495 1 881 201 0 44 chrX 43370101 43370305 -119229625 - AluJo SINE Alu -17 295 101 463 143 77 44 chrX 43370410 43370501 -119229429 + FRAM SINE Alu 29 122 -54 361 337 124 40 chrX 43370536 43370893 -119229037 + L1ME LINE L1 2433 2819 -3327 2114 127 0 6 chrX 43370916 43371230 -119228700 - AluJb SINE Alu 0 312 1 360 338 56 15 chrX 43371306 43371483 -119228447 + L1ME LINE L1 5478 5639 -482 2250 56 0 3 chrX 43371704 43372013 -119227917 - AluY SINE Alu 0 308 1 27 29 0 0 chrX 43372090 43372124 -119227806 + AT_rich Low_complexity Low_complexity 1 34 0 715 196 74 61 chrX 43372127 43372356 -119227574 + L1MC5 LINE L1 6809 7040 -921 977 198 42 58 chrX 43372363 43372449 -119227481 + L1MC5 LINE L1 7621 7707 -254 2409 72 0 0 chrX 43372449 43372754 -119227176 + AluSc SINE Alu 1 305 -4 977 198 42 58 chrX 43372754 43372980 -119226950 + L1MC5 LINE L1 7707 7928 -33 30 27 0 0 chrX 43373070 43373107 -119226823 + AT_rich Low_complexity Low_complexity 1 37 0 1426 133 29 91 chrX 43373107 43373274 -119226656 - AluJo SINE Alu -22 290 114 245 87 0 22 chrX 43373274 43373320 -119226610 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 1710 164 0 13 chrX 43373321 43373619 -119226311 - AluJb SINE Alu -18 294 1 1426 133 29 91 chrX 43373619 43373758 -119226172 - AluJo SINE Alu -197 115 1 2489 30 7 3 chrX 43373821 43374121 -119225809 + AluY SINE Alu 1 301 -10 1977 119 0 19 chrX 43374133 43374451 -119225479 + AluSx SINE Alu 1 312 0 531 212 248 0 chrX 43374557 43374694 -119225236 - MIR SINE MIR -44 218 48 279 0 0 0 chrX 43374997 43375028 -119224902 + (CTG)n Simple_repeat Simple_repeat 3 33 0 780 242 5 0 chrX 43375314 43375500 -119224430 + MER5A DNA MER1_type 1 187 -2 1964 125 7 3 chrX 43375798 43376095 -119223835 - AluSx SINE Alu -8 304 7 2046 78 14 4 chrX 43376439 43376749 -119223181 - AluSx SINE Alu 0 313 1 2139 99 3 0 chrX 43376754 43377048 -119222882 - AluSp SINE Alu -17 296 2 1681 105 0 0 chrX 43377049 43377418 -119222512 - L1M1 LINE L1 -743 5403 5108 1917 149 66 3 chrX 43377419 43377781 -119222149 + L1 LINE L1 3625 4009 -2137 1037 98 14 0 chrX 43377781 43377924 -119222006 - AluSq/x SINE Alu -167 145 1 307 143 0 0 chrX 43378192 43378234 -119221696 + 5S rRNA rRNA 1 42 -79 27 0 0 0 chrX 43378321 43378348 -119221582 + AT_rich Low_complexity Low_complexity 1 27 0 2179 110 0 0 chrX 43378352 43378653 -119221277 + AluSq SINE Alu 1 301 -12 1730 114 0 0 chrX 43378665 43378902 -119221028 + AluSx SINE Alu 1 237 -75 324 0 0 0 chrX 43379330 43379366 -119220564 + (TC)n Simple_repeat Simple_repeat 2 37 0 489 103 0 74 chrX 43379367 43379610 -119220320 + (TA)n Simple_repeat Simple_repeat 1 224 0 2172 121 48 70 chrX 43379610 43380002 -119219928 - Tigger3b DNA MER2_type -2458 570 171 930 172 6 0 chrX 43380002 43380159 -119219771 - FRAM SINE Alu -4 162 5 2172 121 48 70 chrX 43380159 43380259 -119219671 - Tigger3b DNA MER2_type -2857 171 113 2055 106 0 3 chrX 43380259 43380541 -119219389 - AluSx SINE Alu -18 294 14 2172 121 48 70 chrX 43380541 43380651 -119219279 - Tigger3b DNA MER2_type -2915 113 2 838 108 0 8 chrX 43380654 43380774 -119219156 + L1MB1 LINE L1 5909 6027 -141 231 208 21 0 chrX 43381013 43381061 -119218869 + CT-rich Low_complexity Low_complexity 3 51 0 2095 95 0 3 chrX 43381063 43381348 -119218582 - AluSx SINE Alu -28 284 1 879 207 0 0 chrX 43381349 43381518 -119218412 - FRAM SINE Alu -6 170 2 26 0 0 0 chrX 43381524 43381550 -119218380 + AT_rich Low_complexity Low_complexity 1 26 0 1814 151 0 0 chrX 43381690 43381975 -119217955 - AluJb SINE Alu -27 285 1 581 192 120 0 chrX 43381977 43382102 -119217828 - MIR SINE MIR -114 148 9 1064 104 7 0 chrX 43382188 43382332 -119217598 + AluSg/x SINE Alu 135 279 -33 6971 116 22 24 chrX 43382353 43382586 -119217344 + L1MC1 LINE L1 5193 5425 -908 2347 87 3 0 chrX 43382586 43382898 -119217032 + AluSp SINE Alu 1 313 0 6971 116 22 24 chrX 43382898 43383312 -119216618 + L1MC1 LINE L1 5425 5838 -495 2256 72 28 0 chrX 43383312 43383603 -119216327 + AluSx SINE Alu 1 299 -13 6971 116 22 24 chrX 43383603 43383632 -119216298 + L1MC1 LINE L1 5838 5866 -467 2216 138 45 22 chrX 43383632 43383988 -119215942 + THE1B LTR MaLR 1 364 0 6971 116 22 24 chrX 43383988 43384444 -119215486 + L1MC1 LINE L1 5866 6333 0 35 24 0 0 chrX 43385205 43385247 -119214683 + AT_rich Low_complexity Low_complexity 1 42 0 1625 170 0 3 chrX 43385275 43385563 -119214367 - AluJo SINE Alu -17 295 9 941 129 0 7 chrX 43385567 43385707 -119214223 - AluJo SINE Alu -173 139 1 1221 113 0 6 chrX 43386174 43386351 -119213579 - AluSq SINE Alu -136 177 2 1841 112 64 13 chrX 43386354 43386480 -119213450 - L1 LINE L1 -1821 4325 4207 1677 121 80 24 chrX 43386480 43386801 -119213129 - AluSx SINE Alu 0 312 1 2140 68 11 0 chrX 43386809 43387134 -119212796 - AluY SINE Alu 0 328 1 1841 112 64 13 chrX 43387134 43387311 -119212619 - L1 LINE L1 -1945 4201 3996 31 58 0 0 chrX 43387529 43387581 -119212349 + AT_rich Low_complexity Low_complexity 1 52 0 466 278 141 96 chrX 43388280 43389212 -119210718 + L1MEd LINE L1 664 1646 -4483 2353 69 0 0 chrX 43390358 43390649 -119209281 + AluY SINE Alu 3 293 -18 366 23 0 0 chrX 43390783 43390826 -119209104 + (TA)n Simple_repeat Simple_repeat 1 43 0 2190 104 7 0 chrX 43390868 43391166 -119208764 - AluSx SINE Alu -12 300 1 758 192 7 7 chrX 43391178 43391324 -119208606 - AluSp/q SINE Alu -11 302 157 262 250 68 57 chrX 43391438 43391526 -119208404 + MIR SINE MIR 137 225 -37 22 0 0 0 chrX 43391527 43391549 -119208381 + AT_rich Low_complexity Low_complexity 1 22 0 253 281 146 10 chrX 43391831 43391927 -119208003 + MIR SINE MIR 21 129 -79 2097 103 0 13 chrX 43391933 43392235 -119207695 - AluSx SINE Alu -14 298 1 2537 157 79 44 chrX 43392293 43392840 -119207090 + MER74B LTR ERVL 57 622 0 233 152 22 22 chrX 43392996 43393042 -119206888 + MIR3 SINE MIR 157 202 -6 2135 121 0 3 chrX 43393055 43393362 -119206568 + AluSx SINE Alu 1 306 -6 1472 134 18 0 chrX 43393382 43393605 -119206325 + MSTC LTR MaLR 202 428 0 2033 174 58 15 chrX 43393645 43394042 -119205888 - MLT-int LTR MaLR -7 1728 1315 6260 43 31 4 chrX 43394090 43394842 -119205088 + LTR17 LTR ERV1 1 772 -8 2311 92 0 0 chrX 43394991 43395294 -119204636 + AluY SINE Alu 1 303 -8 469 267 0 0 chrX 43395308 43395413 -119204517 - MLT-int LTR MaLR -952 783 679 2296 94 0 22 chrX 43395495 43395814 -119204116 - AluSx SINE Alu 0 312 1 3055 164 14 95 chrX 43395863 43396516 -119203414 - MSTD-int LTR MaLR -632 739 34 2149 104 0 38 chrX 43396516 43396834 -119203096 - AluSg SINE Alu -2 308 3 3055 164 14 95 chrX 43396834 43396874 -119203056 - MSTD-int LTR MaLR -1337 34 99 1555 171 103 58 chrX 43396874 43396944 -119202986 - MSTD LTR MaLR 0 396 331 2151 116 0 0 chrX 43396944 43397246 -119202684 + AluSx SINE Alu 1 302 -10 1555 171 103 58 chrX 43397246 43397554 -119202376 - MSTD LTR MaLR -65 331 1 3055 164 14 95 chrX 43397554 43397647 -119202283 - MSTD-int LTR MaLR -1271 100 1 1624 193 36 30 chrX 43397647 43397855 -119202075 - MLT1A1 LTR MaLR 0 365 160 193 40 0 0 chrX 43397855 43397880 -119202050 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2132 107 0 0 chrX 43397880 43398170 -119201760 - AluSx SINE Alu -23 289 1 1624 193 36 30 chrX 43398170 43398322 -119201608 - MLT1A1 LTR MaLR -204 161 1 2214 71 68 10 chrX 43398403 43398714 -119201216 - LTR5 LTR ERVK -639 330 2 5450 54 27 51 chrX 43398714 43400127 -119199803 - SVA Other Other -116 1267 53 1116 71 0 0 chrX 43400127 43400295 -119199635 + (GGGAGA)n Simple_repeat Simple_repeat 3 170 0 246 32 0 0 chrX 43400383 43400414 -119199516 + (TC)n Simple_repeat Simple_repeat 2 32 0 1865 156 0 3 chrX 43400414 43400697 -119199233 - AluJb SINE Alu -30 282 1 416 313 34 30 chrX 43400830 43401127 -119198803 - L1MEc LINE L1 -3785 2437 2174 24 53 0 0 chrX 43401299 43401337 -119198593 + AT_rich Low_complexity Low_complexity 1 38 0 1438 179 41 21 chrX 43401338 43401628 -119198302 + AluJo SINE Alu 1 296 -16 22 0 0 0 chrX 43401659 43401681 -119198249 + AT_rich Low_complexity Low_complexity 1 22 0 784 195 0 0 chrX 43401681 43401809 -119198121 + FLAM_A SINE Alu 1 128 -5 237 108 0 0 chrX 43401809 43401846 -119198084 + (TA)n Simple_repeat Simple_repeat 1 37 0 2419 61 0 0 chrX 43401896 43402191 -119197739 + AluY SINE Alu 1 295 -16 2263 101 0 3 chrX 43402248 43402554 -119197376 + AluY SINE Alu 1 305 -6 2261 199 88 61 chrX 43402597 43403174 -119196756 + MLT1E LTR MaLR 1 593 0 218 188 62 0 chrX 43403266 43403314 -119196616 + MIR SINE MIR 89 139 -123 192 77 0 0 chrX 43403331 43403357 -119196573 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 2039 125 7 0 chrX 43403357 43403645 -119196285 - AluSx SINE Alu -2 310 21 33 0 0 0 chrX 43404417 43404450 -119195480 + AT_rich Low_complexity Low_complexity 1 33 0 1671 138 65 0 chrX 43404474 43404750 -119195180 - AluJb SINE Alu -18 294 1 863 88 0 0 chrX 43404854 43404967 -119194963 - AluSp/q SINE Alu -10 303 191 2254 81 0 10 chrX 43405278 43405606 -119194324 + AluSx SINE Alu 1 312 0 2142 117 0 10 chrX 43405955 43406262 -119193668 - AluSx SINE Alu -8 304 1 1190 178 13 13 chrX 43406397 43406622 -119193308 + AluJo SINE Alu 84 308 -4 2018 117 9 28 chrX 43406795 43407112 -119192818 + AluSx SINE Alu 1 311 -1 1588 210 103 0 chrX 43407237 43407566 -119192364 - MLT1A1 LTR MaLR -2 363 1 202 231 0 0 chrX 43407791 43407830 -119192100 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1980 137 3 0 chrX 43407836 43408128 -119191802 - AluJb SINE Alu -19 293 1 325 284 7 68 chrX 43408236 43408384 -119191546 - L2 LINE L2 -163 3109 2971 289 233 100 138 chrX 43408392 43408521 -119191409 + MIR SINE MIR 30 147 -115 2297 90 0 3 chrX 43408521 43408832 -119191098 + AluSg SINE Alu 1 310 0 289 233 100 138 chrX 43408832 43408934 -119190996 + MIR SINE MIR 147 251 -11 231 200 0 0 chrX 43408900 43408940 -119190990 + L2 LINE L2 3263 3302 -11 * 827 132 16 0 chrX 43409334 43409455 -119190475 - AluJo SINE Alu -177 135 13 249 354 126 0 chrX 43409758 43409885 -119190045 + L2 LINE L2 3118 3260 -12 349 93 0 0 chrX 43409885 43409939 -119189991 + Alu SINE Alu 249 302 0 180 273 104 13 chrX 43410255 43410332 -119189598 + MIR SINE MIR 64 147 -115 2156 94 0 42 chrX 43410490 43410654 -119189276 - AluSg SINE Alu -15 295 148 2390 58 0 0 chrX 43410654 43410945 -119188985 - AluY SINE Alu -20 291 1 2156 94 0 42 chrX 43410945 43411088 -119188842 - AluSg SINE Alu -162 148 1 1645 173 0 27 chrX 43411092 43411393 -119188537 - AluJo SINE Alu -19 293 1 1594 166 10 36 chrX 43411397 43411423 -119188507 - AluJo SINE Alu -17 295 270 2167 116 0 3 chrX 43411423 43411724 -119188206 + AluSc SINE Alu 1 300 -9 1594 166 10 36 chrX 43411724 43411999 -119187931 - AluJo SINE Alu -42 270 2 2140 114 0 3 chrX 43412228 43412525 -119187405 + AluSq SINE Alu 1 296 -17 2290 93 3 0 chrX 43412526 43412826 -119187104 + AluSx SINE Alu 1 301 -11 1299 155 54 32 chrX 43413001 43413278 -119186652 - MLT1B LTR MaLR -107 283 1 1603 95 63 0 chrX 43413531 43413753 -119186177 - AluSx SINE Alu -76 236 1 2106 97 0 0 chrX 43413753 43414032 -119185898 - AluSq SINE Alu -34 279 1 2163 103 0 0 chrX 43414975 43415275 -119184655 - AluSx SINE Alu -12 300 1 518 314 92 21 chrX 43416972 43417211 -119182719 - MIR SINE MIR -1 261 6 287 281 85 0 chrX 43417463 43417545 -119182385 - L2 LINE L2 -14 3299 3211 393 131 24 24 chrX 43417664 43417748 -119182182 + MER20B DNA MER1_type 694 777 -6 26 0 0 0 chrX 43418385 43418411 -119181519 + AT_rich Low_complexity Low_complexity 1 26 0 1735 150 33 17 chrX 43418588 43418888 -119181042 - AluJo SINE Alu -7 305 1 216 0 0 0 chrX 43418900 43418924 -119181006 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1832 163 0 0 chrX 43419078 43419378 -119180552 + AluJb SINE Alu 12 311 -1 1000 99 13 0 chrX 43419384 43419536 -119180394 + MER41B LTR ERV1 482 635 0 628 81 23 0 chrX 43419536 43419622 -119180308 + MER41B-int LTR ERV1 1 88 -5858 553 125 0 0 chrX 43419617 43419697 -119180233 + MER41B-int LTR ERV1 5408 5487 -459 * 1120 114 114 0 chrX 43419692 43419885 -119180045 + MER41B-int LTR ERV1 5729 5943 -3 3644 98 18 18 chrX 43419887 43420436 -119179494 + MER41B LTR ERV1 1 549 -86 183 42 0 0 chrX 43420438 43420462 -119179468 + (CAA)n Simple_repeat Simple_repeat 2 25 0 665 230 43 72 chrX 43420631 43420735 -119179195 + MIR SINE MIR 60 157 -105 2319 80 0 3 chrX 43420735 43421034 -119178896 - AluSg SINE Alu -12 298 1 665 230 43 72 chrX 43421034 43421138 -119178792 + MIR SINE MIR 157 262 0 429 351 72 9 chrX 43421624 43421911 -119178019 + L1ME3A LINE L1 5560 5866 -304 2376 79 0 7 chrX 43422178 43422481 -119177449 + AluSc SINE Alu 1 301 -8 1903 148 0 16 chrX 43422634 43422951 -119176979 - AluSx SINE Alu 0 312 1 197 196 20 0 chrX 43423592 43423643 -119176287 + CT-rich Low_complexity Low_complexity 3 54 0 265 284 6 11 chrX 43425727 43425903 -119174027 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 282 236 14 7 chrX 43425948 43426088 -119173842 + (TGAA)n Simple_repeat Simple_repeat 1 141 0 241 212 30 0 chrX 43426109 43426175 -119173755 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 192 261 0 0 chrX 43426602 43426667 -119173263 + (TGGG)n Simple_repeat Simple_repeat 3 67 0 882 158 63 6 chrX 43426667 43426825 -119173105 + MER96 DNA MER1_type? 1 167 -8 200 342 13 13 chrX 43426830 43426906 -119173024 + (TGGG)n Simple_repeat Simple_repeat 1 76 0 422 267 6 0 chrX 43426915 43427087 -119172843 + (TGGA)n Simple_repeat Simple_repeat 1 173 0 238 279 14 14 chrX 43427113 43427263 -119172667 + (TGGA)n Simple_repeat Simple_repeat 1 150 0 322 335 39 7 chrX 43427276 43427431 -119172499 + (TGGA)n Simple_repeat Simple_repeat 2 161 0 193 139 0 47 chrX 43428146 43428189 -119171741 - MIR SINE MIR -118 144 104 204 125 0 0 chrX 43428473 43428505 -119171425 + (CCA)n Simple_repeat Simple_repeat 2 33 0 1875 138 13 20 chrX 43429279 43429577 -119170353 + AluJb SINE Alu 1 296 -16 1676 125 0 77 chrX 43429702 43430015 -119169915 - AluJb SINE Alu -23 289 1 1255 102 11 0 chrX 43430144 43430320 -119169610 - AluSg/x SINE Alu -14 298 121 265 256 0 26 chrX 43431052 43431130 -119168800 + (TTCA)n Simple_repeat Simple_repeat 1 76 0 814 272 76 48 chrX 43431178 43431535 -119168395 - L2 LINE L2 -40 3273 2907 27 0 0 0 chrX 43431551 43431578 -119168352 + AT_rich Low_complexity Low_complexity 1 27 0 2245 84 0 7 chrX 43431583 43431879 -119168051 + AluSx SINE Alu 1 294 -18 224 281 49 0 chrX 43432096 43432168 -119167762 + MIR SINE MIR 87 169 -39 2160 100 3 0 chrX 43432682 43432972 -119166958 + AluY SINE Alu 1 291 -20 1919 175 11 3 chrX 43432972 43433321 -119166609 + L1PB4 LINE L1 5777 6128 -28 442 274 45 34 chrX 43433322 43433501 -119166429 + AluSp SINE Alu 2 182 -131 503 173 2 32 chrX 43433501 43433587 -119166343 + L1PB4 LINE L1 6043 6130 -173 2107 108 0 10 chrX 43433587 43433882 -119166048 + AluSx SINE Alu 1 292 -20 503 173 2 32 chrX 43433882 43433914 -119166016 + L1PB4 LINE L1 6130 6278 -25 329 291 47 16 chrX 43433926 43434053 -119165877 + L1ME3A LINE L1 6027 6157 -13 456 248 8 17 chrX 43434295 43434412 -119165518 - MIR SINE MIR -146 116 1 215 194 0 0 chrX 43436106 43436142 -119163788 + (CCG)n Simple_repeat Simple_repeat 2 37 0 244 164 229 0 chrX 43437197 43437258 -119162672 - Charlie2a DNA MER1_type -21 2841 2767 886 193 96 20 chrX 43437266 43437515 -119162415 - Charlie2a DNA MER1_type -1855 1007 740 652 216 118 118 chrX 43437547 43437671 -119162259 - Charlie2a DNA MER1_type -2441 421 298 1297 216 33 39 chrX 43437671 43438005 -119161925 + MER46C DNA MER2_type 5 336 -2 652 216 118 118 chrX 43438005 43438245 -119161685 - Charlie2a DNA MER1_type -2563 299 57 206 243 68 0 chrX 43438714 43438788 -119161142 - MIR SINE MIR -65 197 119 234 266 191 0 chrX 43438900 43438994 -119160936 - MIR SINE MIR -3 259 148 649 249 102 20 chrX 43439008 43439205 -119160725 + MIR SINE MIR 7 219 -43 678 211 101 26 chrX 43439228 43439455 -119160475 - L2 LINE L2 -727 2587 2344 237 304 10 29 chrX 43439421 43439523 -119160407 - MIR SINE MIR -149 113 14 * 341 320 47 52 chrX 43440525 43440697 -119159233 + MER91A DNA MER1_type 1 171 -25 1115 281 89 5 chrX 43440843 43441213 -119158717 - MLT1J2 LTR MaLR 0 450 50 521 277 45 7 chrX 43441309 43441464 -119158466 - MER20B DNA MER1_type -594 189 29 799 224 104 58 chrX 43442483 43442724 -119157206 + MIR SINE MIR 1 252 -10 666 268 77 10 chrX 43442747 43442956 -119156974 + MER46C DNA MER2_type 31 253 -85 440 172 33 73 chrX 43443124 43443275 -119156655 + MER104 DNA Tc2 4 148 -32 463 257 0 66 chrX 43443333 43443485 -119156445 - MIR SINE MIR -51 211 70 247 272 105 26 chrX 43443552 43443666 -119156264 - MIR SINE MIR -67 141 19 180 298 83 24 chrX 43444309 43444393 -119155537 + L2 LINE L2 3121 3209 -63 396 158 0 0 chrX 43446912 43446988 -119152942 + CT-rich Low_complexity Low_complexity 4 79 0 247 261 146 80 chrX 43448358 43448584 -119151346 + L2 LINE L2 3031 3271 -1 1826 142 0 46 chrX 43448792 43449095 -119150835 + AluJb SINE Alu 1 289 -23 233 343 0 0 chrX 43449100 43449240 -119150690 + (ACTTG)n Simple_repeat Simple_repeat 4 143 0 * 347 316 12 6 chrX 43449217 43449385 -119150545 + (GACTG)n Simple_repeat Simple_repeat 2 170 0 319 244 30 52 chrX 43449772 43449907 -119150023 + MER113 DNA MER1_type? 160 291 -230 224 79 26 26 chrX 43449952 43449990 -119149940 - L2 LINE L2 -9 3304 3267 252 0 0 0 chrX 43453140 43453168 -119146762 + (CA)n Simple_repeat Simple_repeat 1 28 0 234 152 0 0 chrX 43454870 43454916 -119145014 - MLT1D LTR MaLR -260 245 200 857 212 15 10 chrX 43454959 43455157 -119144773 - MLT1D LTR MaLR -293 212 14 2343 110 0 0 chrX 43456119 43456420 -119143510 + AluSx SINE Alu 1 301 -11 883 244 67 32 chrX 43456862 43456940 -119142990 - MLT1D LTR MaLR -2 503 429 2161 126 10 0 chrX 43456940 43457242 -119142688 + AluSx SINE Alu 1 305 -7 883 244 67 32 chrX 43457242 43457345 -119142585 - MLT1D LTR MaLR -76 429 331 2476 94 0 0 chrX 43457345 43457654 -119142276 - AluSc SINE Alu 0 309 1 883 244 67 32 chrX 43457654 43457783 -119142147 - MLT1D LTR MaLR -174 331 181 961 167 0 123 chrX 43457867 43458119 -119141811 - MLT1D LTR MaLR -270 235 15 411 21 0 0 chrX 43458443 43458491 -119141439 + (CA)n Simple_repeat Simple_repeat 2 49 0 1123 159 34 29 chrX 43459213 43459421 -119140509 - MER2 DNA MER2_type -135 210 2 2127 172 18 36 chrX 43461040 43461487 -119138443 - MLT1D LTR MaLR -22 483 45 211 148 57 23 chrX 43462147 43462235 -119137695 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 302 188 73 18 chrX 43462261 43462426 -119137504 + (TA)n Simple_repeat Simple_repeat 2 175 0 2323 84 0 3 chrX 43462662 43462974 -119136956 + AluSx SINE Alu 1 311 0 1082 215 22 54 chrX 43463053 43463369 -119136561 - MLT1D LTR MaLR -1 504 199 398 123 0 0 chrX 43463612 43463677 -119136253 - MLT1D LTR MaLR -360 145 81 2294 94 0 14 chrX 43463685 43463982 -119135948 - AluSx SINE Alu -19 293 1 31 44 0 0 chrX 43463993 43464038 -119135892 + AT_rich Low_complexity Low_complexity 1 45 0 722 110 0 0 chrX 43464039 43464139 -119135791 - U6 snRNA snRNA -7 100 1 2073 125 10 3 chrX 43464165 43464476 -119135454 - L1PB4 LINE L1 -7 6149 5837 339 185 46 0 chrX 43464477 43464542 -119135388 - MLT1D LTR MaLR -416 89 22 2041 125 10 7 chrX 43464844 43465139 -119134791 - AluJb SINE Alu -16 296 1 2350 101 0 0 chrX 43465893 43466190 -119133740 + AluSx SINE Alu 1 297 -15 1988 122 0 24 chrX 43466621 43466933 -119132997 + AluSx SINE Alu 1 305 0 1789 126 4 4 chrX 43467791 43468060 -119131870 + MER66B LTR ERV1 215 483 -3 251 180 0 0 chrX 43469909 43469959 -119129971 - MLT1F1 LTR MaLR -2 565 516 337 195 81 11 chrX 43469961 43470048 -119129882 - MLT1F1 LTR MaLR -313 254 162 430 134 50 42 chrX 43470048 43470167 -119129763 - L1M4 LINE L1 -3141 3005 2886 1503 55 45 0 chrX 43470989 43471191 -119128739 - MER30 DNA MER1_type 0 230 20 1794 107 133 7 chrX 43471291 43471561 -119128369 - AluSg1 SINE Alu -5 304 1 1013 144 8 132 chrX 43471828 43471960 -119127970 + MER20 DNA MER1_type 1 148 -71 2120 225 76 45 chrX 43471960 43472363 -119127567 - MER90 LTR ERV1 0 575 186 2457 53 0 0 chrX 43472363 43472686 -119127244 - AluY SINE Alu 0 323 1 1961 151 3 7 chrX 43472688 43472986 -119126944 - AluJb SINE Alu -15 297 1 2120 225 76 45 chrX 43472986 43473133 -119126797 - MER90 LTR ERV1 -389 186 4 1013 144 8 132 chrX 43473133 43473162 -119126768 + MER20 DNA MER1_type 148 179 -40 2837 139 17 9 chrX 43473162 43473623 -119126307 + MLT1C LTR MaLR 3 467 0 1013 144 8 132 chrX 43473623 43473710 -119126220 + MER20 DNA MER1_type 179 219 0 417 185 104 22 chrX 43474078 43474213 -119125717 + L1MC4a LINE L1 7663 7808 0 2099 145 3 0 chrX 43474221 43474525 -119125405 + AluJb SINE Alu 1 305 -7 1658 153 44 22 chrX 43474578 43474874 -119125056 + AluJb SINE Alu 1 302 0 1726 151 6 66 chrX 43474983 43475114 -119124816 + AluJb SINE Alu 1 138 -174 1422 152 124 12 chrX 43475114 43475371 -119124559 - AluSg1 SINE Alu -23 286 1 1726 151 6 66 chrX 43475371 43475556 -119124374 + AluJb SINE Alu 138 298 -14 1405 164 0 5 chrX 43475557 43475776 -119124154 + AluJb SINE Alu 88 305 -7 282 148 0 0 chrX 43475877 43475931 -119123999 + (A)n Simple_repeat Simple_repeat 1 54 0 331 250 70 62 chrX 43477630 43477758 -119122172 + L2 LINE L2 3183 3311 -2 262 231 0 31 chrX 43477760 43477825 -119122105 + L1ME LINE L1 5615 5677 -444 1876 129 14 4 chrX 43478336 43478616 -119121314 - AluJb SINE Alu -25 287 5 1088 220 40 47 chrX 43478834 43478940 -119120990 + L1M4 LINE L1 2770 2875 -3271 2319 97 3 3 chrX 43478940 43479239 -119120691 - AluSq SINE Alu -14 299 1 1088 220 40 47 chrX 43479239 43479496 -119120434 + L1M4 LINE L1 2875 3132 -3014 1823 140 55 10 chrX 43479496 43479788 -119120142 + AluSq SINE Alu 1 305 -8 1198 173 12 119 chrX 43479792 43480128 -119119802 + AluJo SINE Alu 2 301 -1 1088 220 40 47 chrX 43480128 43480180 -119119750 + L1M4 LINE L1 3135 3188 -2958 2091 109 4 0 chrX 43480184 43480459 -119119471 + AluSx SINE Alu 1 276 -36 1903 150 14 3 chrX 43480681 43480975 -119118955 - AluJb SINE Alu -15 297 1 1607 121 25 8 chrX 43481830 43482070 -119117860 + AluSx SINE Alu 1 244 -68 752 176 15 15 chrX 43482221 43482357 -119117573 - AluJb SINE Alu -6 306 171 1461 119 29 0 chrX 43482541 43482751 -119117179 - AluSq SINE Alu -2 311 96 2237 108 16 0 chrX 43482751 43483057 -119116873 + AluSx SINE Alu 1 311 -1 942 129 0 0 chrX 43483067 43483191 -119116739 + FLAM_C SINE Alu 1 124 -19 27 29 0 0 chrX 43483191 43483225 -119116705 + AT_rich Low_complexity Low_complexity 1 34 0 573 181 11 0 chrX 43483371 43483465 -119116465 + FRAM SINE Alu 60 154 -22 23 0 0 0 chrX 43483477 43483500 -119116430 + AT_rich Low_complexity Low_complexity 1 23 0 2313 95 0 10 chrX 43483505 43483800 -119116130 - AluSg SINE Alu -18 292 1 222 303 13 13 chrX 43484028 43484104 -119115826 + MIR SINE MIR 77 152 -110 28 29 0 0 chrX 43484210 43484245 -119115685 + AT_rich Low_complexity Low_complexity 1 35 0 954 138 86 13 chrX 43484245 43484397 -119115533 - AluSx SINE Alu -149 163 1 2259 160 21 18 chrX 43484438 43484826 -119115104 - MLT1B LTR MaLR -1 389 1 319 261 201 27 chrX 43485019 43485031 -119114899 - HAL1b LINE L1 -28 1320 1311 1980 121 13 26 chrX 43485031 43485200 -119114730 - AluSx SINE Alu -9 303 138 2280 101 0 13 chrX 43485200 43485506 -119114424 - AluSx SINE Alu -10 302 1 1980 121 13 26 chrX 43485506 43485643 -119114287 - AluSx SINE Alu -174 138 1 319 261 201 27 chrX 43485643 43485814 -119114116 - HAL1b LINE L1 -37 1311 1105 1653 167 63 97 chrX 43485969 43486040 -119113890 - MLT1D LTR MaLR -13 492 420 2026 138 0 3 chrX 43486040 43486336 -119113594 - AluJb SINE Alu -13 299 5 1653 167 63 97 chrX 43486336 43486678 -119113252 - MLT1D LTR MaLR -85 420 94 2474 101 0 0 chrX 43486678 43486986 -119112944 - AluSx SINE Alu -4 308 1 1653 167 63 97 chrX 43486986 43487033 -119112897 - MLT1D LTR MaLR -411 94 47 241 296 14 0 chrX 43487506 43487577 -119112353 - MIR3 SINE MIR -21 187 116 2224 116 0 0 chrX 43487721 43488013 -119111917 + AluSq SINE Alu 1 292 -21 812 201 0 19 chrX 43488026 43488180 -119111750 + FRAM SINE Alu 1 151 -15 419 269 31 25 chrX 43488258 43488418 -119111512 - MIR3 SINE MIR -30 178 18 2262 98 0 26 chrX 43488529 43488836 -119111094 - AluSx SINE Alu -13 299 1 215 188 50 100 chrX 43488899 43488979 -119110951 - MIR SINE MIR -76 186 111 5213 138 13 24 chrX 43489072 43489490 -119110440 + L1MB3 LINE L1 5193 5614 -569 2201 139 0 0 chrX 43489490 43489793 -119110137 + AluJb SINE Alu 1 303 -9 5213 138 13 24 chrX 43489793 43490149 -119109781 + L1MB3 LINE L1 5614 5972 -211 1832 147 0 58 chrX 43490149 43490295 -119109635 + AluJo SINE Alu 1 154 -158 2378 73 0 13 chrX 43490295 43490595 -119109335 + AluY SINE Alu 1 296 -15 2438 92 0 0 chrX 43490598 43490901 -119109029 + AluSg SINE Alu 1 303 -7 1832 147 0 58 chrX 43490901 43491063 -119108867 + AluJo SINE Alu 156 295 -17 5213 138 13 24 chrX 43491063 43491282 -119108648 + L1MB3 LINE L1 5972 6176 -7 440 247 40 52 chrX 43491952 43492126 -119107804 - MLT1J2 LTR MaLR -23 427 256 259 278 62 0 chrX 43492185 43492282 -119107648 - MLT1J LTR MaLR -323 188 86 251 325 44 16 chrX 43492341 43492502 -119107428 - MIR SINE MIR -62 146 10 586 212 0 9 chrX 43495114 43495227 -119104703 + L2 LINE L2 3201 3312 -1 2218 113 19 7 chrX 43495250 43495559 -119104371 - AluSq SINE Alu 0 313 1 6296 119 72 112 chrX 43495753 43496004 -119103926 + ERVL LTR ERVL 2313 2572 -3082 183 284 45 15 chrX 43496004 43496071 -119103859 - L3 LINE CR1 -1054 523 455 6296 119 72 112 chrX 43496071 43496381 -119103549 + ERVL LTR ERVL 2572 2893 -2761 2511 85 3 0 chrX 43496381 43496686 -119103244 - AluSg SINE Alu -4 306 1 6296 119 72 112 chrX 43496686 43497039 -119102891 + ERVL LTR ERVL 2893 3259 -2395 1719 152 4 15 chrX 43497039 43497308 -119102622 - AluJb SINE Alu -9 303 38 6296 119 72 112 chrX 43497308 43497396 -119102534 + ERVL LTR ERVL 3259 3349 -2305 1921 145 0 35 chrX 43497396 43497707 -119102223 + AluJb SINE Alu 1 300 -12 6296 119 72 112 chrX 43497707 43498156 -119101774 + ERVL LTR ERVL 3349 3745 -1909 1882 172 148 32 chrX 43498177 43498461 -119101469 + MLT2B1 LTR ERVL 1 251 -269 2233 116 0 0 chrX 43498461 43498770 -119101160 - AluSx SINE Alu 0 309 1 1882 172 148 32 chrX 43498770 43498950 -119100980 + MLT2B1 LTR ERVL 251 520 0 2183 128 7 3 chrX 43499387 43499692 -119100238 - AluSx SINE Alu -6 306 1 1693 148 97 0 chrX 43499782 43500060 -119099870 + AluJo SINE Alu 1 305 -7 2293 116 0 0 chrX 43500340 43500634 -119099296 - AluSx SINE Alu -18 294 1 2201 112 0 3 chrX 43500858 43501152 -119098778 - AluSx SINE Alu -19 293 1 240 257 0 29 chrX 43501925 43501995 -119097935 + MIR SINE MIR 171 238 -24 2327 107 7 0 chrX 43502014 43502314 -119097616 - AluSq SINE Alu -11 302 1 180 279 186 31 chrX 43502371 43502500 -119097430 + L2 LINE L2 2794 2942 -372 799 239 87 41 chrX 43502605 43502974 -119096956 + L1M4 LINE L1 2959 3344 -2802 1895 161 0 41 chrX 43502974 43503291 -119096639 + AluJo SINE Alu 1 304 -8 291 192 0 0 chrX 43503535 43503613 -119096317 + (AATAG)n Simple_repeat Simple_repeat 4 81 0 455 198 104 9 chrX 43503664 43503770 -119096160 - L2 LINE L2 -18 3295 3180 202 301 37 52 chrX 43503778 43503914 -119096016 - L2 LINE L2 -328 2944 2811 409 276 64 19 chrX 43503954 43504110 -119095820 - MIR SINE MIR -14 248 86 1208 198 34 4 chrX 43504126 43504363 -119095567 - AluJo SINE Alu -10 302 59 1570 115 86 19 chrX 43604364 43604633 -118995297 + MER21A LTR ERV1 639 925 -6 1240 160 11 80 chrX 43605546 43605808 -118994122 - AluJb SINE Alu -19 293 50 2486 138 5 42 chrX 43605834 43606239 -118993691 + MLT1B LTR MaLR 1 390 0 307 222 42 14 chrX 43606627 43606699 -118993231 + MER81 DNA DNA 26 99 -15 424 238 48 24 chrX 43606721 43606847 -118993083 + L1ME3A LINE L1 6027 6155 -15 803 138 32 16 chrX 43606879 43607002 -118992928 - AluJb SINE Alu -186 126 2 240 342 165 34 chrX 43607265 43607502 -118992428 + L2 LINE L2 3003 3270 -2 483 105 22 21 chrX 43607591 43607680 -118992250 + MLT1B LTR MaLR 312 614 -1 1874 124 51 0 chrX 43608306 43608581 -118991349 + AluJb SINE Alu 9 297 -15 351 296 148 34 chrX 43608636 43609048 -118990882 - LTR67 LTR ERVL 0 557 99 644 268 52 11 chrX 43609162 43609500 -118990430 - MLT1K LTR MaLR 0 588 190 507 241 153 39 chrX 43610211 43610449 -118989481 - L1MC/D LINE L1 -2226 5582 5306 2793 146 11 16 chrX 43610449 43610894 -118989036 + LTR47B LTR ERVL 1 443 0 507 241 153 39 chrX 43610894 43610937 -118988993 - L1MC/D LINE L1 -2502 5306 5269 2152 217 69 50 chrX 43611537 43612215 -118987715 + LTR8 LTR ERV1 1 691 0 3124 203 48 73 chrX 43612288 43613121 -118986809 + MER21B LTR ERV1 1 812 -51 688 294 71 4 chrX 43613645 43613883 -118986047 - MER102b DNA MER1_type 0 341 88 569 141 10 20 chrX 43613889 43613988 -118985942 - AluJo SINE Alu -176 136 39 258 212 0 76 chrX 43613988 43614054 -118985876 - MER102b DNA MER1_type -254 87 27 484 62 15 0 chrX 43614148 43614213 -118985717 - MLT1E3 LTR MaLR 0 624 559 1089 33 0 0 chrX 43614245 43614367 -118985563 + L1PA4 LINE L1 6026 6147 -8 412 134 30 0 chrX 43614374 43614440 -118985490 - MLT1E3 LTR MaLR -49 544 477 1846 183 14 17 chrX 43614440 43614807 -118985123 - MLT1A1 LTR MaLR 0 365 5 1884 233 58 41 chrX 43614811 43615344 -118984586 - MLT1E1 LTR MaLR -112 542 1 1437 105 0 0 chrX 43615424 43615605 -118984325 - AluSq SINE Alu -132 181 1 503 229 8 0 chrX 43615609 43615727 -118984203 - L1M4 LINE L1 -5104 1751 1633 579 257 28 17 chrX 43615911 43615944 -118983986 + L1M4b LINE L1 1244 1275 -5584 3154 85 27 38 chrX 43615944 43616393 -118983537 - MLT2A1 LTR ERVL 0 444 1 579 257 28 17 chrX 43616393 43616538 -118983392 + L1M4b LINE L1 1275 1424 -5435 34 89 0 0 chrX 43616651 43616741 -118983189 + AT_rich Low_complexity Low_complexity 1 90 0 21 89 0 0 chrX 43616790 43616846 -118983084 + AT_rich Low_complexity Low_complexity 1 56 0 193 75 50 0 chrX 43616874 43616914 -118983016 + (TA)n Simple_repeat Simple_repeat 1 42 0 1936 36 0 0 chrX 43616941 43617160 -118982770 - L1PA5 LINE L1 -4 6150 5932 24 0 0 0 chrX 43617160 43617184 -118982746 + AT_rich Low_complexity Low_complexity 1 24 0 1578 224 60 69 chrX 43617184 43617394 -118982536 - L1M4 LINE L1 -5238 1621 1411 2345 95 0 0 chrX 43617394 43617698 -118982232 - AluSq SINE Alu -9 304 1 1578 224 60 69 chrX 43617698 43618339 -118981591 - L1M4 LINE L1 -5448 1411 798 306 284 108 34 chrX 43618342 43618518 -118981412 - L1M4 LINE L1 -6660 199 11 579 101 0 0 chrX 43618631 43618710 -118981220 + L1MC1 LINE L1 6255 6333 0 1807 170 3 3 chrX 43618812 43619124 -118980806 + AluJb SINE Alu 1 312 0 2149 116 3 7 chrX 43619211 43619514 -118980416 - AluSq SINE Alu -11 302 1 343 109 0 0 chrX 43619547 43619602 -118980328 + Alu SINE Alu 246 300 -2 1145 313 50 39 chrX 43619755 43620037 -118979893 - L1M4 LINE L1 -1089 5057 4780 2328 87 3 32 chrX 43620037 43620348 -118979582 - AluSq SINE Alu -11 302 1 1145 313 50 39 chrX 43620348 43620949 -118978981 - L1M4 LINE L1 -1366 4780 4164 518 208 85 39 chrX 43620961 43621091 -118978839 - L2 LINE L2 0 3313 3178 2652 192 6 64 chrX 43621133 43621184 -118978746 - MLT1F LTR MaLR -26 516 464 1201 172 72 79 chrX 43621184 43621474 -118978456 + AluJo SINE Alu 1 288 -24 2652 192 6 64 chrX 43621474 43621956 -118977974 - MLT1F LTR MaLR -78 464 13 2427 104 150 5 chrX 43621956 43622330 -118977600 + MSTA LTR MaLR 1 428 0 2652 192 6 64 chrX 43622330 43622343 -118977587 - MLT1F LTR MaLR -529 13 1 483 213 37 0 chrX 43622518 43622626 -118977304 - MER20B DNA MER1_type -15 768 657 1318 222 10 113 chrX 43622630 43623117 -118976813 - L2 LINE L2 -405 2909 2473 330 162 29 52 chrX 43623660 43623796 -118976134 + (TATAA)n Simple_repeat Simple_repeat 5 137 0 282 150 68 14 chrX 43623799 43623946 -118975984 + (TTATA)n Simple_repeat Simple_repeat 3 157 0 201 104 42 42 chrX 43623949 43623997 -118975933 + (TATAA)n Simple_repeat Simple_repeat 3 50 0 306 0 0 0 chrX 43624030 43624064 -118975866 + (TG)n Simple_repeat Simple_repeat 1 34 0 180 369 73 15 chrX 43624534 43624740 -118975190 - L2 LINE L2 -337 2977 2760 697 273 60 9 chrX 43624744 43624960 -118974970 - MIR SINE MIR 0 262 36 1785 154 7 0 chrX 43626284 43626586 -118973344 - AluJb SINE Alu 0 304 1 2328 107 0 0 chrX 43626975 43627284 -118972646 + AluSc SINE Alu 1 309 0 2070 125 7 23 chrX 43627654 43627958 -118971972 - AluSx SINE Alu -13 299 1 319 246 44 18 chrX 43628352 43628466 -118971464 - L1ME4a LINE L1 -6 6115 5999 809 206 42 69 chrX 43628506 43628650 -118971280 - MIR SINE MIR -2 260 125 1866 163 10 0 chrX 43628650 43628945 -118970985 + AluJb SINE Alu 1 298 -14 809 206 42 69 chrX 43628945 43629062 -118970868 - MIR SINE MIR -137 125 6 1641 130 183 0 chrX 43629412 43629674 -118970256 - AluSx SINE Alu -2 310 1 407 306 153 19 chrX 43629680 43629889 -118970041 + MLT1L LTR MaLR 36 272 -343 278 173 49 74 chrX 43630761 43630842 -118969088 + LTR67 LTR ERVL 475 553 -4 271 176 46 23 chrX 43630852 43630934 -118968996 - MIR SINE MIR -51 157 108 257 184 0 0 chrX 43631289 43631338 -118968592 + L2 LINE L2 3223 3271 -1 281 246 231 31 chrX 43631436 43631566 -118968364 + MIR3 SINE MIR 17 172 -36 336 226 39 59 chrX 43631990 43632092 -118967838 + LTR67 LTR ERVL 456 555 -2 979 92 0 0 chrX 43632162 43632281 -118967649 + FLAM_C SINE Alu 1 119 -24 231 114 0 0 chrX 43632281 43632325 -118967605 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 196 312 80 43 chrX 43632374 43632512 -118967418 - L2 LINE L2 -406 2908 2766 1757 147 38 103 chrX 43632518 43632696 -118967234 - Charlie1 DNA MER1_type 0 2761 2573 2245 125 0 0 chrX 43632696 43633001 -118966929 + AluSx SINE Alu 1 305 -7 1757 147 38 103 chrX 43633001 43633165 -118966765 - Charlie1 DNA MER1_type -188 2573 2452 2161 130 0 22 chrX 43633165 43633481 -118966449 + AluSx SINE Alu 1 309 -3 1757 147 38 103 chrX 43633481 43633585 -118966345 - Charlie1 DNA MER1_type -309 2452 2343 275 352 0 0 chrX 43633583 43633654 -118966276 - Charlie1 DNA MER1_type -2690 71 1 * 196 320 90 8 chrX 43633802 43633924 -118966006 - L2 LINE L2 -646 2668 2537 1515 222 39 129 chrX 43634064 43634382 -118965548 - Charlie7 DNA MER1_type -1887 725 380 2228 106 0 31 chrX 43634382 43634417 -118965513 - AluSp SINE Alu -2 311 276 303 28 0 0 chrX 43634417 43634453 -118965477 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2228 106 0 31 chrX 43634453 43634738 -118965192 - AluSp SINE Alu -37 276 1 1515 222 39 129 chrX 43634738 43635058 -118964872 - Charlie7 DNA MER1_type -2232 380 162 6373 30 0 0 chrX 43635058 43635758 -118964172 - L1PA4 LINE L1 0 6155 5456 1515 222 39 129 chrX 43635758 43635869 -118964061 - Charlie7 DNA MER1_type -2450 162 43 5936 127 17 6 chrX 43635904 43636784 -118963146 + MER49 LTR ERV1 1 890 -33 1745 158 13 26 chrX 43636785 43637264 -118962666 + AluJb SINE Alu 1 475 0 284 0 28 0 chrX 43637267 43637303 -118962627 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 295 185 19 0 chrX 43637653 43637707 -118962223 + L2 LINE L2 3255 3309 -4 541 257 145 37 chrX 43637840 43638054 -118961876 - MLT1J LTR MaLR -37 474 238 186 43 0 0 chrX 43638353 43638376 -118961554 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 182 327 0 0 chrX 43638376 43638428 -118961502 - L2 LINE L2 -13 3300 3249 856 124 15 15 chrX 43638723 43638860 -118961070 + FRAM SINE Alu 21 157 -19 730 200 68 63 chrX 43639550 43639755 -118960175 + MIR SINE MIR 57 262 0 295 227 0 40 chrX 43640522 43640597 -118959333 - L2 LINE L2 0 3272 3201 297 311 30 30 chrX 43640602 43640734 -118959196 - L2 LINE L2 -260 3012 2881 271 327 105 12 chrX 43640821 43640983 -118958947 + MIR SINE MIR 82 258 -4 832 110 93 0 chrX 43641111 43641229 -118958701 - FLAM_C SINE Alu -4 129 1 3386 209 68 45 chrX 43641746 43642207 -118957723 - L1MDa LINE L1 -4179 2361 1912 2149 93 52 3 chrX 43642207 43642498 -118957432 + L1PA16 LINE L1 5853 6157 -9 3386 209 68 45 chrX 43642498 43643111 -118956819 - L1MDa LINE L1 -4628 1912 1262 2005 141 0 0 chrX 43643137 43643427 -118956503 + AluJb SINE Alu 1 290 -22 287 261 80 43 chrX 43643432 43643570 -118956360 + L1MD2 LINE L1 2329 2471 -3925 582 288 19 19 chrX 43643571 43643776 -118956154 + L1MD2 LINE L1 3462 3666 -2549 3896 208 70 39 chrX 43643777 43644908 -118955022 + L1MD2 LINE L1 5148 6321 -107 1773 171 0 20 chrX 43644908 43645201 -118954729 + AluJb SINE Alu 1 287 -25 3896 208 70 39 chrX 43645201 43645300 -118954630 + L1MD2 LINE L1 6321 6415 -13 * 4636 150 14 8 chrX 43645299 43646153 -118953777 - L1MA9 LINE L1 -743 5403 4583 * 5345 117 27 37 chrX 43646147 43647022 -118952908 + L1MA9 LINE L1 5435 6312 0 904 293 64 48 chrX 43647499 43647658 -118952272 - L1MC4a LINE L1 -1884 5924 5769 1979 152 0 7 chrX 43647658 43647955 -118951975 - AluJb SINE Alu -17 295 1 904 293 64 48 chrX 43647955 43648276 -118951654 - L1MC4a LINE L1 -2039 5769 5436 3465 89 13 0 chrX 43648697 43649144 -118950786 + L1PA16 LINE L1 5710 6162 -4 441 273 67 13 chrX 43649420 43649570 -118950360 + MIR SINE MIR 105 262 0 1879 213 95 32 chrX 43649653 43650179 -118949751 - LTR8 LTR ERV1 0 691 133 761 124 19 0 chrX 43650180 43650285 -118949645 + AluSx SINE Alu 2 108 -205 1153 119 0 0 chrX 43650337 43650488 -118949442 + AluSx SINE Alu 113 263 -49 463 127 28 0 chrX 43650491 43650562 -118949368 - LTR8A LTR ERV1 -654 73 1 2701 81 46 44 chrX 43650982 43651550 -118948380 - MER51A LTR ERV1 0 634 1 2902 127 23 26 chrX 43651796 43652401 -118947529 + MER4E LTR ERV1 2 779 0 198 0 0 0 chrX 43652401 43652423 -118947507 + (T)n Simple_repeat Simple_repeat 1 22 0 584 186 20 0 chrX 43652619 43652721 -118947209 + MER5A DNA MER1_type 9 112 -77 206 255 266 11 chrX 43652645 43652739 -118947191 - MER5A DNA MER1_type -23 166 49 * 1509 163 73 35 chrX 43652965 43653253 -118946677 + AluJb SINE Alu 1 299 -13 896 211 22 93 chrX 43653299 43653569 -118946361 - MIR SINE MIR -7 255 5 293 279 56 22 chrX 43654439 43654623 -118945307 + HAL1b LINE L1 1198 1299 -49 1754 149 0 4 chrX 43654680 43654941 -118944989 - AluJb SINE Alu -16 296 37 1988 125 119 9 chrX 43654942 43655279 -118944651 + MER51B LTR ERV1 2 375 -2 303 134 0 19 chrX 43655281 43655347 -118944583 - AluJb SINE Alu -268 40 1 867 241 0 0 chrX 43655477 43655647 -118944283 - MLT1B LTR MaLR -4 386 217 1553 149 127 38 chrX 43655648 43656259 -118943671 + LTR8A LTR ERV1 2 727 0 570 238 88 25 chrX 43656357 43656517 -118943413 - MLT1B LTR MaLR -204 170 1 4350 106 3 54 chrX 43656543 43657186 -118942744 - MER4B LTR ERV1 0 610 1 225 299 52 13 chrX 43657196 43657273 -118942657 - MIR SINE MIR -44 218 139 197 219 0 0 chrX 43657296 43657337 -118942593 - L2 LINE L2 -16 3297 3257 1145 198 60 8 chrX 43657339 43657591 -118942339 + MLT1E-int LTR MaLR 342 606 -765 887 277 93 95 chrX 43657790 43658486 -118941444 + MLT1E-int LTR MaLR 677 1371 0 556 194 0 19 chrX 43658486 43658589 -118941341 + MLT1E LTR MaLR 1 101 -492 1890 189 27 11 chrX 43658743 43659108 -118940822 + MLT2D LTR ERVL 3 373 -41 252 86 0 0 chrX 43659116 43659151 -118940779 + (CA)n Simple_repeat Simple_repeat 1 35 0 296 167 0 0 chrX 43659151 43659199 -118940731 + MLT2D LTR ERVL 350 397 0 1496 206 57 7 chrX 43659202 43659498 -118940432 + MLT1E LTR MaLR 283 593 0 592 287 45 49 chrX 43659642 43659889 -118940041 + MIR SINE MIR 1 246 -16 605 254 0 23 chrX 43660131 43660261 -118939669 + L2 LINE L2 3186 3312 -1 905 244 28 40 chrX 43660529 43660779 -118939151 - MIR SINE MIR -14 248 2 268 277 64 21 chrX 43660815 43660909 -118939021 + L2 LINE L2 3169 3266 -6 236 277 48 48 chrX 43660932 43661015 -118938915 - L2 LINE L2 -3 3310 3228 937 130 30 30 chrX 43661026 43661195 -118938735 + FRAM SINE Alu 1 169 -7 696 301 103 32 chrX 43661196 43661533 -118938397 - L2 LINE L2 -102 3211 2827 2925 129 50 5 chrX 43661533 43661975 -118937955 - MLT1C LTR MaLR -1 466 5 696 301 103 32 chrX 43661975 43662139 -118937791 - L2 LINE L2 -486 2827 2676 180 343 180 12 chrX 43662706 43662878 -118937052 + MIR SINE MIR 12 212 -50 1738 149 4 0 chrX 43663358 43663620 -118936310 + AluJb SINE Alu 31 293 -19 417 258 0 10 chrX 43663666 43663763 -118936167 + L2 LINE L2 3172 3267 -5 439 338 0 0 chrX 43663863 43663996 -118935934 - MIR SINE MIR -71 191 59 358 191 12 60 chrX 43664195 43664279 -118935651 - L2 LINE L2 -9 3263 3184 226 248 60 120 chrX 43664366 43664483 -118935447 - MER5A DNA MER1_type -63 126 17 903 159 0 8 chrX 43664799 43664931 -118934999 + FLAM_C SINE Alu 2 132 -1 314 206 272 0 chrX 43665415 43665507 -118934423 - MER94 DNA DNA -15 119 3 629 258 60 43 chrX 43667175 43667408 -118932522 - MIR SINE MIR -25 237 1 184 303 71 10 chrX 43668758 43668857 -118931073 + L3 LINE CR1 1450 1554 -23 22 0 0 0 chrX 43669214 43669236 -118930694 + AT_rich Low_complexity Low_complexity 1 22 0 2207 108 0 23 chrX 43669622 43669929 -118930001 + AluSc SINE Alu 1 300 -9 198 0 0 0 chrX 43670290 43670312 -118929618 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 273 292 83 121 chrX 43674309 43674672 -118925258 + L2 LINE L2 2919 3267 -5 429 285 22 51 chrX 43674875 43675012 -118924918 + MIR SINE MIR 20 152 -56 1687 196 6 6 chrX 43676323 43676635 -118923295 - AluJb SINE Alu 0 312 1 760 235 121 79 chrX 43676679 43677134 -118922796 - L1ME4a LINE L1 0 6121 5648 195 69 0 0 chrX 43677154 43677183 -118922747 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 539 283 115 16 chrX 43677901 43678092 -118921838 - MIR SINE MIR 0 262 53 396 149 40 0 chrX 43678891 43678965 -118920965 - MER116 DNA Mariner 0 80 4 217 286 0 0 chrX 43680860 43680916 -118919014 + GA-rich Low_complexity Low_complexity 1 56 0 1846 178 0 6 chrX 43681555 43681869 -118918061 + AluJb SINE Alu 1 312 0 2147 146 52 0 chrX 43681885 43682214 -118917716 + MER7A DNA MER2_type 3 346 0 1025 197 83 89 chrX 43682419 43682779 -118917151 - L1MC4 LINE L1 -3 8039 7682 889 274 80 29 chrX 43683585 43683626 -118916304 - L1MC4a LINE L1 -96 6025 5988 2210 126 0 0 chrX 43683626 43683928 -118916002 + AluJb SINE Alu 1 302 -10 889 274 80 29 chrX 43683928 43684361 -118915569 - L1MC4a LINE L1 -133 5988 5532 1455 185 59 20 chrX 43686181 43686522 -118913408 - L1MA9 LINE L1 -38 6274 5921 2233 42 0 4 chrX 43687157 43687418 -118912512 + AluY SINE Alu 42 301 -10 1215 181 3 101 chrX 43687548 43687886 -118912044 + L1MD2 LINE L1 6025 6329 -30 1502 160 30 4 chrX 43687907 43688169 -118911761 - AluJo SINE Alu -32 280 12 1329 89 0 0 chrX 43688196 43688364 -118911566 - AluSx SINE Alu -15 297 130 207 0 0 0 chrX 43688389 43688412 -118911518 + (T)n Simple_repeat Simple_repeat 1 23 0 925 94 47 0 chrX 43688412 43688539 -118911391 - AluSx SINE Alu -179 133 1 324 0 0 0 chrX 43688583 43688619 -118911311 + (CA)n Simple_repeat Simple_repeat 2 37 0 258 32 0 0 chrX 43688618 43688649 -118911281 + (TC)n Simple_repeat Simple_repeat 1 31 0 * 21 71 0 0 chrX 43688806 43688848 -118911082 + AT_rich Low_complexity Low_complexity 1 42 0 1564 182 45 17 chrX 43689407 43689527 -118910403 + AluJo SINE Alu 1 116 -196 180 0 0 0 chrX 43689527 43689547 -118910383 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1564 182 45 17 chrX 43689547 43689717 -118910213 + AluJo SINE Alu 116 299 -13 252 86 0 0 chrX 43690831 43690866 -118909064 + (TA)n Simple_repeat Simple_repeat 2 36 0 221 386 53 3 chrX 43691301 43691444 -118908486 - MIR SINE MIR -72 136 4 506 57 143 0 chrX 43692025 43692095 -118907835 - MADE1 DNA Mariner 0 80 1 1224 191 23 5 chrX 43692318 43692538 -118907392 + MER58A DNA MER1_type 1 224 0 865 251 0 23 chrX 43692678 43692893 -118907037 - MIR SINE MIR -49 213 4 262 268 122 0 chrX 43695287 43695369 -118904561 + MER5A DNA MER1_type 91 182 -7 772 33 11 0 chrX 43695946 43696036 -118903894 + L1PA5 LINE L1 6058 6148 -6 237 370 111 15 chrX 43697074 43697209 -118902721 + L2 LINE L2 3116 3263 -9 358 194 27 39 chrX 43698959 43699086 -118900844 + L1ME3A LINE L1 5814 5945 -225 295 274 55 43 chrX 43699152 43699316 -118900614 + L1ME3A LINE L1 5963 6128 -42 40988 33 21 1 chrX 43700065 43706097 -118893833 - L1PA2 LINE L1 0 6155 1 23 68 0 0 chrX 43707149 43707193 -118892737 + AT_rich Low_complexity Low_complexity 1 44 0 219 36 0 0 chrX 43709914 43709942 -118889988 + (TA)n Simple_repeat Simple_repeat 2 29 0 325 303 49 0 chrX 43709950 43710072 -118889858 + L1ME4a LINE L1 5638 5765 -2043 357 335 119 8 chrX 43710092 43710328 -118889602 + L1ME4a LINE L1 5835 6096 -25 573 253 30 36 chrX 43710561 43710727 -118889203 + MIR3 SINE MIR 38 202 -6 1916 218 58 20 chrX 43711171 43711708 -118888222 + L1MC3 LINE L1 4 560 -5485 1080 181 34 47 chrX 43711780 43712100 -118887830 + L1MC3 LINE L1 553 868 -5177 1746 209 79 29 chrX 43712117 43712764 -118887166 + L1M4 LINE L1 2797 3475 -2671 608 247 53 21 chrX 43712784 43713027 -118886903 + L1MC3 LINE L1 3048 3298 -3266 773 167 195 0 chrX 43713034 43713249 -118886681 - L1MA8 LINE L1 -4 6308 6052 11882 166 44 36 chrX 43713288 43715019 -118884911 + L1MC3 LINE L1 3917 5632 -2571 2409 62 3 13 chrX 43715019 43715323 -118884607 + AluY SINE Alu 1 301 -10 11882 166 44 36 chrX 43715323 43715710 -118884220 + L1MC3 LINE L1 5632 6014 -2189 180 0 0 0 chrX 43715710 43715730 -118884200 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 11882 166 44 36 chrX 43715730 43716510 -118883420 + L1MC3 LINE L1 6014 6786 -1417 1984 108 64 50 chrX 43716510 43716852 -118883078 - MER7A DNA MER2_type 0 346 2 11882 166 44 36 chrX 43716852 43717606 -118882324 + L1MC3 LINE L1 6786 7594 -609 2189 104 0 62 chrX 43717606 43717963 -118881967 + MER1B DNA MER1_type 3 337 0 11882 166 44 36 chrX 43717963 43718408 -118881522 + L1MC3 LINE L1 7594 8034 -169 498 295 112 93 chrX 43719030 43719559 -118880371 + L2 LINE L2 2435 2973 -341 225 94 0 0 chrX 43719688 43719720 -118880210 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 225 170 0 57 chrX 43720218 43720271 -118879659 - MARNA DNA Mariner -529 57 8 257 238 0 32 chrX 43720361 43720424 -118879506 + MIR SINE MIR 106 166 -96 710 261 81 54 chrX 43720739 43721111 -118878819 + L2 LINE L2 2928 3309 -4 543 250 69 25 chrX 43721317 43721521 -118878409 + LTR7 LTR ERV1 238 450 0 538 198 0 17 chrX 43721783 43721899 -118878031 - MIR SINE MIR 0 262 149 275 343 46 0 chrX 43721933 43722041 -118877889 + L2 LINE L2 3201 3313 0 451 218 89 47 chrX 43722312 43722569 -118877361 + L1MC/D LINE L1 5264 5531 -2277 627 256 17 0 chrX 43722570 43722746 -118877184 + L1MC/D LINE L1 5643 5821 -1987 908 225 67 42 chrX 43722808 43723478 -118876452 + L1ME1 LINE L1 5298 6148 -18 2220 161 29 2 chrX 43723718 43724139 -118875791 - L1MB4 LINE L1 -26 6154 5723 380 302 69 13 chrX 43724873 43725032 -118874898 - MIR SINE MIR -3 259 92 195 245 43 64 chrX 43725196 43725290 -118874640 - L2 LINE L2 -1344 1970 1879 864 64 24 0 chrX 43725313 43725438 -118874492 + L1MA6 LINE L1 6173 6300 0 469 216 67 8 chrX 43725736 43725870 -118874060 + LTR16A1 LTR ERVL 316 457 0 2474 83 0 0 chrX 43725988 43726290 -118873640 + AluSx SINE Alu 1 302 -10 2356 185 69 63 chrX 43726414 43726678 -118873252 + MER99 DNA DNA 196 457 -371 1780 154 0 49 chrX 43726678 43726984 -118872946 - AluJb SINE Alu -21 291 1 2356 185 69 63 chrX 43726984 43727342 -118872588 + MER99 DNA DNA 457 822 -6 1270 251 6 9 chrX 43727380 43727727 -118872203 - L1MC4 LINE L1 -463 7579 7234 21 36 0 0 chrX 43727749 43727777 -118872153 + AT_rich Low_complexity Low_complexity 1 28 0 1554 227 89 23 chrX 43727777 43728296 -118871634 - L1MC4 LINE L1 -989 7053 6501 211 346 38 38 chrX 43730143 43730276 -118869654 + L2 LINE L2 2720 2852 -462 234 258 258 0 chrX 43731699 43731792 -118868138 + L2 LINE L2 3137 3253 -19 603 156 16 8 chrX 43732091 43732213 -118867717 - Charlie1 DNA MER1_type 0 2761 2639 5363 23 0 0 chrX 43732214 43732866 -118867064 - L1PA3 LINE L1 -1408 4738 4087 7708 22 0 0 chrX 43732866 43734257 -118865673 + L1PA3 LINE L1 4760 6150 -5 703 227 91 36 chrX 43734325 43734545 -118865385 - Charlie1 DNA MER1_type -285 2476 7 346 304 32 20 chrX 43734999 43735246 -118864684 + L1 LINE L1 3667 3916 -2230 401 310 146 16 chrX 43735386 43736012 -118863918 + L1 LINE L1 4088 4791 -1355 3149 23 3 5 chrX 43736014 43736404 -118863526 - L1PA4 LINE L1 -432 5723 5335 3471 26 22 0 chrX 43736404 43736819 -118863111 + L1PA4 LINE L1 5730 6154 -1 4321 166 68 150 chrX 43737236 43738663 -118861267 + L1MD3 LINE L1 6 1274 -5152 2221 114 0 16 chrX 43738663 43738978 -118860952 + AluSg SINE Alu 1 310 0 4321 166 68 150 chrX 43738978 43739239 -118860691 + L1MD3 LINE L1 1274 1555 -4871 3515 217 22 5 chrX 43739244 43740192 -118859738 + L1MD3 LINE L1 2559 3522 -2904 322 301 0 31 chrX 43740242 43740416 -118859514 + GA-rich Low_complexity Low_complexity 1 280 0 41132 29 22 1 chrX 43740475 43746504 -118853426 + L1HS LINE L1 1 6155 0 202 200 0 0 chrX 43746504 43746544 -118853386 + GA-rich Low_complexity Low_complexity 2 41 0 422 172 35 11 chrX 43746581 43746668 -118853262 + L1MA5A LINE L1 6204 6292 -5 2970 208 40 27 chrX 43746668 43749377 -118850553 + L1MD3 LINE L1 3559 5584 -842 36 53 0 0 chrX 43749390 43749447 -118850483 + AT_rich Low_complexity Low_complexity 1 57 0 717 171 97 0 chrX 43749450 43749626 -118850304 + L1MC2 LINE L1 6150 6342 -2 1070 122 24 0 chrX 43749745 43749909 -118850021 - MER5A DNA MER1_type 0 189 22 192 135 0 0 chrX 43750371 43750408 -118849522 + (GA)n Simple_repeat Simple_repeat 1 37 0 201 300 50 25 chrX 43750805 43750885 -118849045 + L2 LINE L2 3214 3295 -18 225 337 12 48 chrX 43751589 43751672 -118848258 + L2 LINE L2 3171 3250 -22 210 289 0 13 chrX 43752063 43752139 -118847791 + (TGAA)n Simple_repeat Simple_repeat 1 75 0 210 302 135 0 chrX 43752513 43752609 -118847321 + L2 LINE L2 3144 3252 -20 284 102 20 0 chrX 43752773 43752822 -118847108 + (GA)n Simple_repeat Simple_repeat 1 50 0 825 196 92 0 chrX 43753118 43753291 -118846639 - MER5A DNA MER1_type 0 189 1 310 313 127 0 chrX 43754590 43754724 -118845206 + L2 LINE L2 3158 3308 -5 298 308 23 38 chrX 43755054 43755187 -118844743 + L2 LINE L2 3182 3312 -1 1954 169 0 6 chrX 43755436 43755750 -118844180 + AluJo SINE Alu 1 312 0 296 117 52 26 chrX 43755750 43755827 -118844103 + GA-rich Low_complexity Low_complexity 2 80 0 309 373 10 0 chrX 43755968 43756070 -118843860 + L2 LINE L2 3134 3236 -36 255 336 43 43 chrX 43756613 43756729 -118843201 + L2 LINE L2 3137 3252 -20 313 274 39 39 chrX 43756787 43756889 -118843041 + L2 LINE L2 3143 3244 -28 455 312 40 0 chrX 43757299 43757424 -118842506 + L2 LINE L2 3141 3270 -2 252 293 159 39 chrX 43757839 43757850 -118842080 + MIR SINE MIR 1 9 -253 845 201 112 0 chrX 43757850 43758019 -118841911 - MER5A DNA MER1_type 0 189 2 252 293 159 39 chrX 43758019 43758215 -118841715 + MIR SINE MIR 9 233 -29 306 0 0 0 chrX 43758504 43758538 -118841392 + (TG)n Simple_repeat Simple_repeat 1 34 0 549 30 0 0 chrX 43758540 43758607 -118841323 + (GA)n Simple_repeat Simple_repeat 2 68 0 886 232 97 4 chrX 43759720 43759957 -118839973 + L2 LINE L2 2456 2714 -600 3329 194 70 56 chrX 43760033 43761058 -118838872 + L1MC5 LINE L1 6611 7653 -308 2301 98 0 7 chrX 43761058 43761355 -118838575 - AluSq SINE Alu -16 297 3 3329 194 70 56 chrX 43761355 43761429 -118838501 + L1MC5 LINE L1 7653 7725 -236 256 234 91 0 chrX 43761461 43761538 -118838392 + L2 LINE L2 2844 2927 -345 * 806 199 71 103 chrX 43761523 43761804 -118838126 + L2 LINE L2 3042 3313 0 405 246 82 0 chrX 43763035 43763145 -118836785 - MIR SINE MIR -21 241 123 383 0 21 0 chrX 43763254 43763301 -118836629 + (CA)n Simple_repeat Simple_repeat 1 48 0 327 78 0 0 chrX 43763302 43763353 -118836577 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 3010 262 30 113 chrX 43763398 43764184 -118835746 - L2 LINE L2 -727 2587 1737 530 30 0 0 chrX 43764184 43764251 -118835679 - L1P LINE L1 -1125 5021 4955 2151 38 0 11 chrX 43764251 43764515 -118835415 + L1PA5 LINE L1 5887 6149 -5 3010 262 30 113 chrX 43764515 43765066 -118834864 - L2 LINE L2 -1575 1739 1300 538 287 32 11 chrX 43765188 43765376 -118834554 - MIR SINE MIR -58 204 13 180 152 0 0 chrX 43767316 43767349 -118832581 + GA-rich Low_complexity Low_complexity 3 35 0 465 269 143 11 chrX 43767741 43767923 -118832007 + MIR SINE MIR 53 258 -4 1907 148 18 0 chrX 43768162 43768445 -118831485 + AluJo SINE Alu 1 288 -24 180 340 10 58 chrX 43769718 43769821 -118830109 + L3b LINE CR1 1452 1549 -34 195 311 106 42 chrX 43771469 43771752 -118828178 + L2 LINE L2 1965 2265 -1049 217 330 45 11 chrX 43772208 43772296 -118827634 + L2 LINE L2 2982 3072 -200 195 42 0 0 chrX 43773758 43773782 -118826148 + (A)n Simple_repeat Simple_repeat 1 24 0 310 219 31 10 chrX 43774181 43774277 -118825653 + L1ME3A LINE L1 6068 6165 -5 4972 101 15 9 chrX 43774342 43775245 -118824685 + L1PB1 LINE L1 5063 5938 -213 1863 149 0 0 chrX 43775245 43775514 -118824416 + AluSx SINE Alu 1 269 -43 4972 101 15 9 chrX 43775514 43775678 -118824252 + L1PB1 LINE L1 5938 6100 -51 991 86 16 0 chrX 43775682 43775810 -118824120 + AluSg/x SINE Alu 165 294 -18 22 0 0 0 chrX 43775859 43775881 -118824049 + AT_rich Low_complexity Low_complexity 1 22 0 1344 134 0 23 chrX 43776691 43776908 -118823022 + AluJo SINE Alu 87 298 -14 1075 220 93 7 chrX 43777114 43777405 -118822525 + MER5C DNA MER1_type 3 318 -6 246 159 48 48 chrX 43779161 43779224 -118820706 - MER103 DNA DNA -78 88 26 1698 174 22 41 chrX 43781067 43781384 -118818546 + AluJo SINE Alu 2 312 0 231 146 0 0 chrX 43781388 43781429 -118818501 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 21 0 0 0 chrX 43781487 43781508 -118818422 + AT_rich Low_complexity Low_complexity 1 21 0 303 270 59 64 chrX 43781544 43781748 -118818182 + L1M4 LINE L1 3628 3830 -2316 209 100 50 17 chrX 43782276 43782336 -118817594 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 316 159 16 0 chrX 43782947 43783010 -118816920 + L1MA10 LINE L1 6261 6324 -10 24 32 0 0 chrX 43784402 43784433 -118815497 + AT_rich Low_complexity Low_complexity 1 31 0 811 187 17 62 chrX 43786062 43786351 -118813579 + L1MA8 LINE L1 6010 6285 -6 296 280 0 13 chrX 43787438 43787513 -118812417 - MIR3 SINE MIR -28 180 107 422 288 158 54 chrX 43787524 43787654 -118812276 - MIR SINE MIR -16 246 131 1006 179 0 17 chrX 43787654 43787833 -118812097 - MER45A DNA AcHobo -2 176 1 422 288 158 54 chrX 43787833 43787924 -118812006 - MIR SINE MIR -131 131 2 293 319 3 12 chrX 43787927 43788020 -118811910 - MIR SINE MIR -90 118 29 367 292 0 18 chrX 43788458 43788571 -118811359 + MIR SINE MIR 32 142 -120 852 176 74 6 chrX 43789686 43789862 -118810068 - MER5A DNA MER1_type -1 188 1 864 192 111 15 chrX 43789895 43790093 -118809837 - MER20 DNA MER1_type 0 219 3 225 333 303 4 chrX 43790217 43790451 -118809479 - L2 LINE L2 -35 3237 2934 1007 66 22 7 chrX 43790723 43790860 -118809070 - MER85 DNA T2_type 0 139 1 454 294 61 50 chrX 43790867 43791047 -118808883 + L2 LINE L2 3087 3268 -4 271 211 11 142 chrX 43791053 43791243 -118808687 + L2 LINE L2 2331 2495 -819 522 266 68 13 chrX 43791300 43791478 -118808452 + MIR SINE MIR 1 190 -68 375 271 64 51 chrX 43791695 43792009 -118807921 + L1ME4a LINE L1 5617 5934 -187 * 2026 148 71 0 chrX 43791735 43792127 -118807803 + L1MB7 LINE L1 5647 6066 -118 508 123 0 12 chrX 43792134 43792215 -118807715 - Tigger5 DNA MER2_type 0 2323 2244 458 190 7 36 chrX 43792212 43792357 -118807573 - Tigger5 DNA MER2_type -2129 194 1 * 529 119 0 0 chrX 43792357 43792441 -118807489 + L1MB8 LINE L1 6095 6178 0 1340 41 41 0 chrX 43792446 43792616 -118807314 + L1PA4 LINE L1 5976 6152 -3 359 287 85 58 chrX 43793299 43793487 -118806443 + MIR SINE MIR 20 212 -50 864 202 50 57 chrX 43793677 43793822 -118806108 + L1MC4 LINE L1 7759 7903 -139 414 0 0 0 chrX 43793822 43793868 -118806062 + (CA)n Simple_repeat Simple_repeat 2 47 0 864 202 50 57 chrX 43793868 43794004 -118805926 + L1MC4 LINE L1 7903 8038 -4 899 242 78 17 chrX 43794040 43794333 -118805597 + L1MB8 LINE L1 13 323 -6536 1978 204 63 11 chrX 43794399 43794677 -118805253 + L1MB8 LINE L1 4745 5007 -1950 485 100 11 0 chrX 43794677 43794767 -118805163 + (TA)n Simple_repeat Simple_repeat 2 92 0 1978 204 63 11 chrX 43794767 43795046 -118804884 + L1MB8 LINE L1 5007 5331 -1626 3579 142 43 31 chrX 43795045 43795726 -118804204 + L1MB8 LINE L1 6292 6980 -9 2805 224 46 25 chrX 43795732 43796603 -118803327 + L1M4 LINE L1 2148 3044 -3102 2318 126 0 0 chrX 43796603 43796912 -118803018 + AluSx SINE Alu 1 309 -3 2805 224 46 25 chrX 43796912 43797014 -118802916 + L1M4 LINE L1 3044 3142 -3004 11955 22 0 1 chrX 43797016 43798486 -118801444 - L1HS LINE L1 -858 5288 3820 7604 0 0 0 chrX 43798484 43799366 -118800564 + L1HS LINE L1 5274 6155 0 * 3626 233 75 13 chrX 43799352 43800700 -118799230 + L1M4 LINE L1 3072 4503 -1643 * 208 87 22 65 chrX 43801168 43801214 -118798716 + MIR SINE MIR 206 249 -13 28 0 0 0 chrX 43801218 43801246 -118798684 + AT_rich Low_complexity Low_complexity 1 28 0 895 261 29 1 chrX 43801408 43801630 -118798300 + MIR SINE MIR 9 234 -28 22 35 0 0 chrX 43801636 43801665 -118798265 + AT_rich Low_complexity Low_complexity 1 29 0 216 250 0 0 chrX 43801893 43801941 -118797989 + L2 LINE L2 3261 3308 -5 390 274 56 13 chrX 43803269 43803464 -118796466 - LTR65 LTR ERV1 -6 663 403 394 220 37 0 chrX 43803594 43803703 -118796227 - LTR65 LTR ERV1 -499 170 58 594 315 34 21 chrX 43804441 43804679 -118795251 + MIR SINE MIR 6 246 -16 609 367 94 50 chrX 43804974 43806458 -118793472 - L2 LINE L2 -1401 1913 366 1538 203 50 87 chrX 43807652 43808215 -118791715 + L1MD2 LINE L1 5803 6344 -15 669 337 61 76 chrX 43808233 43808666 -118791264 + L3 LINE CR1 564 985 -592 2355 90 0 3 chrX 43808666 43808966 -118790964 - AluSx SINE Alu -13 299 1 669 337 61 76 chrX 43808966 43809205 -118790725 + L3 LINE CR1 985 1226 -351 354 243 162 15 chrX 43809346 43809482 -118790448 + L3 LINE CR1 1257 1412 -165 747 232 50 6 chrX 43809521 43809702 -118790228 - MIR SINE MIR -51 211 23 282 261 0 76 chrX 43810873 43810965 -118788965 - MIR SINE MIR -86 122 38 315 256 73 0 chrX 43811002 43811084 -118788846 + MIR SINE MIR 63 150 -58 265 264 0 0 chrX 43811193 43811246 -118788684 - Zaphod DNA AcHobo -1 4030 3978 938 268 53 38 chrX 43811252 43811526 -118788404 - MER115 DNA AcHobo -257 436 155 1417 103 75 0 chrX 43811526 43811740 -118788190 + MER30 DNA MER1_type 1 230 0 938 268 53 38 chrX 43811740 43811804 -118788126 - MER115 DNA AcHobo -538 155 93 22 35 0 0 chrX 43811954 43811983 -118787947 + AT_rich Low_complexity Low_complexity 1 29 0 542 267 26 10 chrX 43812166 43812361 -118787569 + L1ME4a LINE L1 5604 5801 -320 1812 197 0 0 chrX 43812377 43812687 -118787243 + AluJo SINE Alu 1 310 -2 2385 67 14 3 chrX 43812797 43813094 -118786836 + AluSp SINE Alu 1 300 -13 21 0 0 0 chrX 43813243 43813264 -118786666 + AT_rich Low_complexity Low_complexity 1 21 0 233 303 39 122 chrX 43814269 43814523 -118785407 + L2 LINE L2 2992 3224 -48 727 152 0 21 chrX 43814752 43814897 -118785033 - MER33 DNA MER1_type 0 324 183 1871 117 18 20 chrX 43814902 43815275 -118784655 + L1MA2 LINE L1 5958 6305 0 674 126 39 0 chrX 43815285 43815412 -118784518 - MER33 DNA MER1_type -132 192 61 611 238 116 0 chrX 43815415 43815587 -118784343 + MIR SINE MIR 70 261 -1 295 374 0 41 chrX 43816136 43816259 -118783671 + MIR3 SINE MIR 10 127 -81 1352 154 19 0 chrX 43816633 43816847 -118783083 - MER20 DNA MER1_type 0 219 2 309 223 81 81 chrX 43817666 43817814 -118782116 + L1ME4a LINE L1 5974 6121 0 211 338 108 19 chrX 43817825 43818038 -118781892 - L2 LINE L2 -1106 2208 1977 226 231 48 115 chrX 43818079 43818183 -118781747 - MIR3 SINE MIR -13 195 99 199 240 67 13 chrX 43818389 43818464 -118781466 + L3 LINE CR1 362 440 -1137 345 253 202 15 chrX 43818464 43818662 -118781268 + L2 LINE L2 2127 2361 -953 394 309 62 12 chrX 43818679 43818841 -118781089 + L3 LINE CR1 404 573 -1004 2307 95 23 0 chrX 43818862 43819166 -118780764 + AluSp SINE Alu 1 311 -2 2191 221 78 28 chrX 43819212 43819777 -118780153 + MLT1E LTR MaLR 1 593 0 2143 113 3 3 chrX 43819927 43820220 -118779710 + AluSx SINE Alu 1 293 -19 1874 109 20 59 chrX 43820230 43820533 -118779397 + AluSc SINE Alu 1 291 -18 601 152 0 0 chrX 43820540 43820632 -118779298 + U6 snRNA snRNA 1 92 -15 215 373 79 16 chrX 43820686 43820812 -118779118 + L3 LINE CR1 932 1065 -512 14097 29 3 1 chrX 43821121 43823571 -118776359 + L1PA5 LINE L1 3695 6146 -8 207 0 0 0 chrX 43824040 43824063 -118775867 + (A)n Simple_repeat Simple_repeat 1 23 0 549 256 218 19 chrX 43824619 43824655 -118775275 - MIR SINE MIR 0 262 234 2026 123 21 0 chrX 43824655 43824939 -118774991 - AluSx SINE Alu -22 290 1 549 256 218 19 chrX 43824939 43825113 -118774817 - MIR SINE MIR -28 234 10 206 335 127 32 chrX 43825358 43825579 -118774351 - L2 LINE L2 -35 3237 2996 184 236 109 0 chrX 43825660 43825715 -118774215 - MIR SINE MIR -34 228 168 239 133 0 22 chrX 43825719 43825764 -118774166 + MER94 DNA DNA 6 49 -85 339 236 264 0 chrX 43825815 43825925 -118774005 - MIR SINE MIR -92 170 32 193 269 0 0 chrX 43825957 43826009 -118773921 - L2 LINE L2 -557 2757 2706 7040 31 3 1 chrX 43826202 43827794 -118772136 - L1PA5 LINE L1 -20 6134 4542 296 265 17 17 chrX 43828787 43828904 -118771026 - L1MC4a LINE L1 -1871 5937 5821 759 188 51 7 chrX 43828906 43829044 -118770886 - FRAM SINE Alu -38 138 1 196 263 26 53 chrX 43829880 43829956 -118769974 - MIR SINE MIR -50 212 139 * 284 310 0 23 chrX 43829947 43830034 -118769896 - L2 LINE L2 -2 3270 3186 816 302 81 36 chrX 43830097 43830611 -118769319 + L2 LINE L2 2773 3310 -3 472 246 53 86 chrX 43831884 43832071 -118767859 + MIR3 SINE MIR 3 183 -25 918 150 47 52 chrX 43832226 43832439 -118767491 - MIR SINE MIR -35 227 16 237 320 150 10 chrX 43832440 43832540 -118767390 - MIR SINE MIR -127 135 22 33 25 0 0 chrX 43832717 43832757 -118767173 + AT_rich Low_complexity Low_complexity 1 40 0 317 216 58 14 chrX 43833535 43833674 -118766256 - L1ME4a LINE L1 -1 6120 5976 1772 164 0 0 chrX 43833770 43834044 -118765886 + AluJb SINE Alu 3 276 -36 1583 135 22 94 chrX 43834057 43834376 -118765554 - AluJo SINE Alu -16 296 1 307 210 120 0 chrX 43834381 43834481 -118765449 - L1ME4a LINE L1 -299 5822 5711 253 211 224 0 chrX 43834737 43834813 -118765117 - MIR SINE MIR 0 262 170 718 203 55 6 chrX 43834833 43834996 -118764934 - MER5B DNA MER1_type -6 172 2 572 265 41 7 chrX 43834996 43835138 -118764792 - MIR SINE MIR -98 164 18 1248 199 21 8 chrX 43835141 43835377 -118764553 - MER8 DNA MER2_type 0 239 1 897 261 161 40 chrX 43835432 43835954 -118763976 - L1ME4a LINE L1 -246 5875 5291 307 270 90 11 chrX 43836248 43836337 -118763593 + MER5B DNA MER1_type 60 155 -23 377 333 16 24 chrX 43836458 43836581 -118763349 + L2 LINE L2 3150 3271 -1 402 263 144 38 chrX 43836925 43837043 -118762887 + MIR3 SINE MIR 18 159 -49 2455 50 0 0 chrX 43837043 43837340 -118762590 - AluY SINE Alu -14 297 1 402 263 144 38 chrX 43837340 43837381 -118762549 + MIR3 SINE MIR 159 194 -14 629 219 56 124 chrX 43837572 43837687 -118762243 - MIR SINE MIR 0 262 169 4246 110 14 1 chrX 43837687 43838340 -118761590 - L1MA4 LINE L1 -11 6289 5629 629 219 56 124 chrX 43838340 43838457 -118761473 - MIR SINE MIR -93 169 46 604 294 218 18 chrX 43838894 43839329 -118760601 + L2 LINE L2 2323 2844 -470 233 239 149 37 chrX 43841252 43841386 -118758544 + L1ME4a LINE L1 5965 6113 -8 2073 58 48 65 chrX 43841529 43841839 -118758091 + AluSx SINE Alu 1 305 -7 586 228 74 12 chrX 43843764 43843926 -118756004 - MIR SINE MIR -18 244 73 363 295 108 8 chrX 43844010 43844139 -118755791 - MIR SINE MIR -100 162 21 390 255 0 41 chrX 43844161 43844259 -118755671 - MIR SINE MIR -65 143 50 3923 141 55 5 chrX 43844361 43844998 -118754932 - LTR65 LTR ERV1 0 669 1 243 334 61 49 chrX 43845119 43845383 -118754547 - L2 LINE L2 -310 2962 2696 2199 86 18 0 chrX 43845522 43845801 -118754129 + AluSq SINE Alu 1 284 -29 624 215 230 20 chrX 43846252 43846452 -118753478 + MIR SINE MIR 21 262 0 262 236 0 18 chrX 43847144 43847199 -118752731 - L2 LINE L2 -17 3255 3202 1182 260 74 39 chrX 43847402 43847517 -118752413 + L1MC4a LINE L1 5361 5471 -2337 1959 134 0 0 chrX 43847517 43847792 -118752138 + AluSx SINE Alu 1 275 -37 243 88 0 0 chrX 43847798 43847832 -118752098 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1182 260 74 39 chrX 43847832 43848158 -118751772 + L1MC4a LINE L1 5475 5830 -1978 1759 187 10 3 chrX 43848158 43848458 -118751472 + AluJo SINE Alu 1 302 -10 1182 260 74 39 chrX 43848458 43848497 -118751433 + L1MC4a LINE L1 5830 5866 -1942 2226 107 0 10 chrX 43848671 43848969 -118750961 + AluSx SINE Alu 1 295 -17 1011 224 110 0 chrX 43849260 43849550 -118750380 - MER5C DNA MER1_type 0 324 3 257 311 25 56 chrX 43849643 43849804 -118750126 - MIR SINE MIR -52 210 55 542 226 0 90 chrX 43850350 43850527 -118749403 + L2 LINE L2 2717 2877 -437 27 0 0 0 chrX 43850745 43850772 -118749158 + AT_rich Low_complexity Low_complexity 1 27 0 197 208 0 83 chrX 43850859 43850907 -118749023 - L2 LINE L2 -18 3295 3252 2874 207 67 41 chrX 43850916 43851779 -118748151 - L1MDa LINE L1 -4853 1687 658 783 193 78 6 chrX 43851778 43851944 -118747986 - L1MDa LINE L1 -6354 186 9 * 3418 246 98 29 chrX 43851945 43853290 -118746640 + L2 LINE L2 1823 3246 -67 1692 111 4 4 chrX 43853313 43853548 -118746382 - AluSg/x SINE Alu -2 308 74 284 168 5 34 chrX 43853552 43853622 -118746308 + L1MD2 LINE L1 5569 5638 -695 1480 203 36 4 chrX 43854478 43854949 -118744981 + L1MD2 LINE L1 5815 6349 -10 2250 236 282 96 chrX 43854949 43856106 -118743824 - L2 LINE L2 -1485 1829 224 322 283 115 0 chrX 43856106 43856219 -118743711 + MER94 DNA DNA 2 127 -7 2250 236 282 96 chrX 43856219 43856486 -118743444 - L2 LINE L2 -3090 224 8 1312 261 18 9 chrX 43856859 43857185 -118742745 + L2 LINE L2 2128 2456 -858 1043 166 199 22 chrX 43857197 43857468 -118742462 - MER2 DNA MER2_type -26 319 1 1879 229 58 32 chrX 43857469 43858241 -118741689 + L2 LINE L2 2502 3308 -5 530 276 99 20 chrX 43858319 43858623 -118741307 - L1M4 LINE L1 -1717 4429 4102 7839 244 58 32 chrX 43858626 43859047 -118740883 - L1M4 LINE L1 -824 5322 4913 258 116 0 0 chrX 43859047 43859090 -118740840 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 7839 244 58 32 chrX 43859090 43859466 -118740464 - L1M4 LINE L1 -1233 4913 4548 2307 93 3 16 chrX 43859466 43859802 -118740128 - AluSp SINE Alu 0 313 1 7839 244 58 32 chrX 43859802 43861769 -118738161 - L1M4 LINE L1 -1598 4548 3023 5695 45 0 5 chrX 43861769 43862419 -118737511 + L1PA6 LINE L1 5506 6152 -2 7839 244 58 32 chrX 43862419 43862547 -118737383 - L1M4 LINE L1 -3123 3023 2900 2253 68 51 3 chrX 43862868 43863160 -118736770 + AluSg SINE Alu 1 306 -4 3276 246 59 38 chrX 43863181 43864354 -118735576 - L1MEc LINE L1 -4547 1849 653 3290 158 52 32 chrX 43864367 43865044 -118734886 + MER67C LTR ERV1 21 710 0 519 287 27 0 chrX 43865044 43865267 -118734663 - L1MEc LINE L1 -5740 656 378 236 212 24 47 chrX 43865333 43865365 -118734565 + T-rich Low_complexity Low_complexity 2 33 -51 486 116 0 0 chrX 43865365 43865434 -118734496 - L1MA9 LINE L1 -5 6307 6239 236 212 24 47 chrX 43865434 43865486 -118734444 + T-rich Low_complexity Low_complexity 33 84 0 810 182 176 0 chrX 43865555 43865635 -118734295 - L1MA9 LINE L1 -58 6254 6189 234 0 0 0 chrX 43865635 43865661 -118734269 + (TG)n Simple_repeat Simple_repeat 2 27 0 810 182 176 0 chrX 43865661 43865756 -118734174 - L1MA9 LINE L1 -123 6189 6048 * 1066 246 70 14 chrX 43865753 43866037 -118733893 - L1MEc LINE L1 -6086 310 11 3407 216 45 115 chrX 43866622 43866811 -118733119 + L1ME1 LINE L1 4448 4649 -1517 1851 140 49 83 chrX 43866811 43867197 -118732733 - THE1C LTR MaLR 0 375 3 6700 154 108 50 chrX 43867199 43868693 -118731237 - THE1C-int LTR MaLR 0 1580 1 2014 127 47 75 chrX 43868693 43869079 -118730851 - THE1C LTR MaLR 0 375 1 3407 216 45 115 chrX 43869079 43869830 -118730100 + L1ME1 LINE L1 4649 5452 -714 1800 188 0 6 chrX 43869830 43870144 -118729786 + AluJb SINE Alu 1 312 0 3407 216 45 115 chrX 43870144 43870263 -118729667 + L1ME1 LINE L1 5452 5578 -588 1971 124 35 0 chrX 43870263 43870363 -118729567 + AluSx SINE Alu 21 116 -196 213 65 0 0 chrX 43870363 43870394 -118729536 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1971 124 35 0 chrX 43870394 43870575 -118729355 + AluSx SINE Alu 116 312 0 3407 216 45 115 chrX 43870575 43871320 -118728610 + L1ME1 LINE L1 5578 6163 -3 1611 161 144 29 chrX 43871321 43871738 -118728192 - Charlie1b DNA MER1_type -47 476 12 1994 152 3 0 chrX 43872510 43872799 -118727131 + AluJo SINE Alu 1 290 -22 463 208 0 10 chrX 43872938 43873039 -118726891 - L1MCb LINE L1 -5375 670 571 1468 270 36 56 chrX 43873118 43873704 -118726226 - L1MCb LINE L1 -5469 576 3 426 322 27 0 chrX 43873738 43873884 -118726046 - HAL1 LINE L1 -2356 151 2 679 270 77 21 chrX 43873892 43874277 -118725653 - L1MEc LINE L1 -2302 3827 3408 288 0 0 0 chrX 43874279 43874311 -118725619 + (TA)n Simple_repeat Simple_repeat 2 33 0 2364 107 3 0 chrX 43874311 43874620 -118725310 - AluSx SINE Alu -2 310 1 589 232 91 93 chrX 43874627 43874766 -118725164 - L1MEc LINE L1 -2849 3280 3142 1720 128 32 32 chrX 43874766 43875048 -118724882 - AluSx SINE Alu -1 311 30 589 232 91 93 chrX 43875048 43875326 -118724604 - L1MEc LINE L1 -2987 3142 2864 783 294 144 23 chrX 43875702 43876175 -118723755 - L1MEc LINE L1 -4579 1731 1202 482 390 19 24 chrX 43876411 43876824 -118723106 - L1MEc LINE L1 -5256 863 453 368 323 63 71 chrX 43876973 43877338 -118722592 - L1MEc LINE L1 -5756 363 2 279 111 0 0 chrX 43877476 43877521 -118722409 - L1MA4A LINE L1 0 6303 6259 238 284 114 69 chrX 43877844 43878150 -118721780 - L1MEd LINE L1 -5335 784 465 270 308 65 79 chrX 43878230 43878522 -118721408 - L1MEd LINE L1 -5783 336 49 1135 141 0 47 chrX 43879036 43879228 -118720702 + MER5A DNA MER1_type 1 183 -6 835 145 61 0 chrX 43879477 43879608 -118720322 + FRAM SINE Alu 1 40 0 430 94 62 0 chrX 43879709 43879773 -118720157 + MER51D LTR ERV1 500 567 -90 462 238 8 16 chrX 43879790 43879916 -118720014 + L1ME3A LINE L1 5852 5976 -194 671 148 82 15 chrX 43879927 43880062 -118719868 + L1ME3A LINE L1 6027 6170 0 2409 81 0 19 chrX 43880640 43880950 -118718980 + AluSx SINE Alu 1 304 -8 1589 229 76 39 chrX 43881672 43882207 -118717723 + L1MC4 LINE L1 7505 8042 0 288 280 48 56 chrX 43882522 43882647 -118717283 - L2 LINE L2 0 3313 3190 477 256 45 34 chrX 43883440 43883616 -118716314 - MIR SINE MIR -6 256 79 249 33 0 0 chrX 43883616 43883646 -118716284 + (T)n Simple_repeat Simple_repeat 1 30 0 249 228 0 0 chrX 43886012 43886091 -118713839 + (CTGGGG)n Simple_repeat Simple_repeat 1 79 0 294 236 0 0 chrX 43886368 43886491 -118713439 + C-rich Low_complexity Low_complexity 5 127 0 508 283 11 44 chrX 43886738 43886918 -118713012 - MER5A DNA MER1_type 0 189 16 180 0 0 0 chrX 43888299 43888319 -118711611 + (CTG)n Simple_repeat Simple_repeat 2 21 0 261 261 43 0 chrX 43888541 43888610 -118711320 - L2 LINE L2 -3 3310 3239 3611 216 50 17 chrX 43889110 43890040 -118709890 - Charlie2 DNA MER1_type -27 2835 1876 983 194 36 60 chrX 43890070 43890322 -118709608 - Charlie2 DNA MER1_type -2541 321 76 24 32 0 0 chrX 43890366 43890397 -118709533 + AT_rich Low_complexity Low_complexity 1 31 0 1882 124 2 146 chrX 43890573 43890836 -118709094 + MER2 DNA MER2_type 1 188 -157 1925 104 58 84 chrX 43890836 43891182 -118708748 - MER1B DNA MER1_type 0 337 1 1882 124 2 146 chrX 43891182 43891321 -118708609 + MER2 DNA MER2_type 188 345 0 317 248 9 28 chrX 43891366 43891475 -118708455 + L1MC5 LINE L1 4561 4667 -1479 232 258 16 129 chrX 43891580 43891623 -118708307 + MLT1J LTR MaLR 400 446 -65 392 228 78 106 chrX 43891623 43891803 -118708127 + MER104 DNA MER2_type 2 176 -4 232 258 16 129 chrX 43891803 43891883 -118708047 + MLT1J LTR MaLR 446 509 -2 422 317 85 20 chrX 43891887 43892086 -118707844 + L2 LINE L2 2750 2961 -353 246 274 253 0 chrX 43892196 43892291 -118707639 + L2 LINE L2 3195 3313 0 255 250 11 23 chrX 43892309 43892397 -118707533 - L1M LINE L1 -766 5404 5318 559 217 20 5 chrX 43892468 43892598 -118707332 - MIR SINE MIR -62 146 70 548 316 0 68 chrX 43892790 43893056 -118706874 - L2 LINE L2 -366 2948 2701 617 168 168 7 chrX 43893084 43893227 -118706703 - MIR SINE MIR 0 262 97 1677 242 120 70 chrX 43894377 43895874 -118704056 + L1MC5 LINE L1 5543 7223 -738 1161 164 26 62 chrX 43895874 43896100 -118703830 - MER20 DNA MER1_type 0 219 2 1677 242 120 70 chrX 43896100 43896830 -118703100 + L1MC5 LINE L1 7223 7915 -46 9855 176 108 45 chrX 43896848 43898129 -118701801 + L1MDa LINE L1 5 1203 -5337 1779 129 56 31 chrX 43898129 43898415 -118701515 - AluSx SINE Alu -19 293 1 9855 176 108 45 chrX 43898415 43899073 -118700857 + L1MDa LINE L1 1203 1818 -4722 2090 130 23 0 chrX 43899073 43899372 -118700558 + AluSx SINE Alu 1 306 -6 9855 176 108 45 chrX 43899372 43899809 -118700121 + L1MDa LINE L1 1818 2533 -4007 1163 97 32 75 chrX 43899824 43900010 -118699920 + FRAM SINE Alu 1 171 -5 1942 167 229 15 chrX 43900012 43900467 -118699463 + L1MD2 LINE L1 5730 6281 -78 1412 188 110 55 chrX 43900740 43901086 -118698844 - MLT1A1 LTR MaLR 0 365 1 26 0 0 0 chrX 43901392 43901418 -118698512 + AT_rich Low_complexity Low_complexity 1 26 0 198 150 0 0 chrX 43901981 43902021 -118697909 + (TAG)n Simple_repeat Simple_repeat 1 40 0 872 182 19 0 chrX 43902244 43902398 -118697532 - FRAM SINE Alu -20 156 1 323 296 114 0 chrX 43902520 43902652 -118697278 + L2 LINE L2 562 708 -2606 366 306 88 38 chrX 43902907 43903195 -118696735 - L2 LINE L2 -191 3081 2775 203 175 0 0 chrX 43903924 43903964 -118695966 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2504 203 65 25 chrX 43905473 43906031 -118693899 + L1ME1 LINE L1 5582 6161 -5 666 272 95 29 chrX 43907440 43907683 -118692247 + MIR SINE MIR 2 260 -2 5336 31 1 17 chrX 43907724 43908445 -118691485 + L1PA4 LINE L1 5462 6167 0 804 81 0 0 chrX 43908458 43908557 -118691373 + AluS SINE Alu 1 99 -213 2141 175 115 5 chrX 43908758 43909175 -118690755 - MLT1C LTR MaLR -4 463 1 1920 133 4 0 chrX 43910106 43910384 -118689546 + AluJb SINE Alu 12 290 -22 279 79 0 0 chrX 43910384 43910422 -118689508 + (GA)n Simple_repeat Simple_repeat 1 38 0 1875 243 61 22 chrX 43910498 43910943 -118688987 + LTR16B LTR ERVL 1 462 -2 3743 316 35 6 chrX 43911187 43912449 -118687481 + HERV16 LTR ERVL 266 1564 -3432 1111 227 26 72 chrX 43912488 43912873 -118687057 + L1MD2 LINE L1 5970 6342 -17 713 229 7 0 chrX 43913000 43913153 -118686777 + HsTC2 DNA Tc2 360 513 -1385 * 1929 174 36 77 chrX 43913129 43913623 -118686307 + HsTC2 DNA Tc2 1251 1900 0 28 0 0 0 chrX 43915045 43915073 -118684857 + AT_rich Low_complexity Low_complexity 1 28 0 5479 124 40 9 chrX 43915174 43916148 -118683782 - L1MB1 LINE L1 0 6168 5160 377 232 35 78 chrX 43917173 43917315 -118682615 + LTR67 LTR ERVL 422 557 0 1164 185 26 9 chrX 43917449 43917676 -118682254 + MSTB2 LTR MaLR 1 231 -226 2242 150 19 14 chrX 43918118 43918478 -118681452 + MLT1A1 LTR MaLR 4 365 0 186 43 0 0 chrX 43920180 43920203 -118679727 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 977 185 72 26 chrX 43920230 43920425 -118679505 - MER63A DNA MER1_type -6 204 1 384 282 123 36 chrX 43920789 43921009 -118678921 - MIR SINE MIR -11 251 13 237 301 77 58 chrX 43921604 43921760 -118678170 - MIR SINE MIR -75 187 29 555 21 65 0 chrX 43922605 43922698 -118677232 + GA-rich Low_complexity Low_complexity 2 100 0 224 191 34 79 chrX 43923257 43923346 -118676584 + L2 LINE L2 3179 3263 -50 226 233 33 0 chrX 43923441 43923501 -118676429 - MIR SINE MIR -127 135 74 1990 218 92 23 chrX 43923798 43923880 -118676050 + MER68 LTR ERV1 1 76 -486 2693 201 105 11 chrX 43923880 43924452 -118675478 + MLT1E2 LTR MaLR 1 626 0 1990 218 92 23 chrX 43924452 43924891 -118675039 + MER68 LTR ERV1 76 558 -4 2134 123 13 0 chrX 43925374 43925675 -118674255 + AluSx SINE Alu 1 305 -7 190 280 0 120 chrX 43925971 43926071 -118673859 - L2 LINE L2 -34 3238 3151 1003 194 0 6 chrX 43926138 43926298 -118673632 - FRAM SINE Alu -7 159 1 627 129 0 11 chrX 43926523 43926616 -118673314 + AluYb8 SINE Alu 214 305 -13 519 302 124 47 chrX 43926653 43927040 -118672890 + LTR67 LTR ERVL 134 550 -7 306 0 0 0 chrX 43927057 43927091 -118672839 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 668 151 119 0 chrX 43927461 43927587 -118672343 - MIR SINE MIR -10 252 112 209 194 71 31 chrX 43927589 43927687 -118672243 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 352 241 61 81 chrX 43927713 43927974 -118671956 - L1ME4a LINE L1 -11 6110 5855 425 238 221 8 chrX 43930181 43930416 -118669514 - L1M4 LINE L1 -3644 2502 2218 1714 240 156 23 chrX 43930433 43931439 -118668491 + L1ME4a LINE L1 2823 4003 -2143 831 161 58 0 chrX 43931465 43931499 -118668431 - MER46A DNA MER2_type -60 176 135 288 214 222 26 chrX 43931499 43931616 -118668314 + MER46A DNA MER2_type 3 142 -94 905 267 108 15 chrX 43931652 43932060 -118667870 + L1ME4a LINE L1 4040 4485 -1661 395 195 12 24 chrX 43932712 43932794 -118667136 - MER94 DNA DNA -46 88 8 415 291 137 0 chrX 43933726 43933843 -118666087 + L2 LINE L2 3122 3254 -18 1805 219 75 29 chrX 43933870 43934387 -118665543 + L1MC4 LINE L1 7502 8042 0 2128 132 0 0 chrX 43937141 43937436 -118662494 + AluJo SINE Alu 1 295 -17 343 286 107 52 chrX 43937437 43937496 -118662434 + L1ME4a LINE L1 5615 5669 -452 3164 132 2 16 chrX 43937496 43937987 -118661943 + MER31A LTR ERV1 1 484 -1 343 286 107 52 chrX 43937987 43938217 -118661713 + L1ME4a LINE L1 5669 5920 -201 22 35 0 0 chrX 43940121 43940150 -118659780 + AT_rich Low_complexity Low_complexity 1 29 0 2845 210 50 48 chrX 43940704 43942027 -118657903 - L1M4 LINE L1 -1277 4869 3409 502 188 164 36 chrX 43942012 43942177 -118657753 - L1M4 LINE L1 -3516 2630 2445 * 3958 216 37 37 chrX 43942190 43942832 -118657098 + L1MC/D LINE L1 3710 4351 -1795 1800 163 0 11 chrX 43942832 43943115 -118656815 + AluSx SINE Alu 1 280 -32 3356 37 3 0 chrX 43943115 43943494 -118656436 + L1PA4 LINE L1 5774 6153 -2 3958 216 37 37 chrX 43943494 43943878 -118656052 + L1MC/D LINE L1 4349 4737 -1409 1468 173 20 0 chrX 43943871 43944120 -118655810 - L1MD3 LINE L1 -340 7655 7402 * 781 172 0 0 chrX 43944121 43944243 -118655687 - MLT1F1 LTR MaLR -445 122 1 2104 231 45 21 chrX 43944244 43944776 -118655154 - L1MD3 LINE L1 -718 7277 6733 1421 231 95 24 chrX 43944781 43945232 -118654698 + L1MC/D LINE L1 4725 5207 -939 1301 154 81 0 chrX 43945236 43945470 -118654460 + L1MD3 LINE L1 7730 7982 -13 2247 136 3 23 chrX 43945616 43945962 -118653968 - MER1B DNA MER1_type 0 339 1 1422 247 31 0 chrX 43946385 43946809 -118653121 + L1MC/D LINE L1 5191 5625 -734 629 286 65 60 chrX 43946824 43946896 -118653034 + L1MCc LINE L1 44 114 -6308 1645 106 171 33 chrX 43946896 43947171 -118652759 - AluSq SINE Alu 0 313 1 629 286 65 60 chrX 43947171 43947486 -118652444 + L1MCc LINE L1 114 777 -5645 713 316 18 43 chrX 43947782 43948195 -118651735 - L1MCb LINE L1 -5681 364 27 * 1461 212 53 96 chrX 43948179 43948471 -118651459 - L1MDa LINE L1 -3860 2680 2422 1798 153 108 13 chrX 43948471 43948785 -118651145 + MER2 DNA MER2_type 1 344 0 1461 212 53 96 chrX 43948785 43949115 -118650815 - L1MDa LINE L1 -4118 2422 2079 2149 69 55 0 chrX 43949466 43949774 -118650156 - AluY SINE Alu 0 323 1 4239 34 0 0 chrX 43950525 43951024 -118648906 - L1PA3 LINE L1 -1002 5144 4646 8338 16 1 0 chrX 43951024 43952029 -118647901 + L1PA3 LINE L1 5150 6155 0 1793 135 40 4 chrX 43952549 43952876 -118647054 - AluJo SINE Alu 0 337 1 3396 144 31 13 chrX 43954188 43954743 -118645187 + MER34B LTR ERV1 1 565 0 457 88 81 6 chrX 43954804 43954964 -118644966 + (TA)n Simple_repeat Simple_repeat 1 172 0 39 50 0 0 chrX 43954964 43955024 -118644906 + AT_rich Low_complexity Low_complexity 1 60 0 940 182 168 10 chrX 43955769 43955972 -118643958 + MER21B LTR ERV1 12 246 -617 765 40 0 10 chrX 43955978 43956078 -118643852 + L1PA15 LINE L1 5369 5467 -698 319 89 81 8 chrX 43956091 43956214 -118643716 + (TTATA)n Simple_repeat Simple_repeat 1 132 0 375 186 0 82 chrX 43956238 43956432 -118643498 + (TTTA)n Simple_repeat Simple_repeat 2 179 0 363 193 29 35 chrX 43956355 43956591 -118643339 + (TTATA)n Simple_repeat Simple_repeat 1 234 0 * 433 154 33 55 chrX 43956603 43956844 -118643086 + (TTAA)n Simple_repeat Simple_repeat 1 235 0 5198 99 12 0 chrX 43956864 43957548 -118642382 + L1PA15 LINE L1 5470 6161 -4 2260 120 0 0 chrX 43957587 43957887 -118642043 + AluSx SINE Alu 1 300 -12 2480 210 68 8 chrX 43957976 43958509 -118641421 + MER21B LTR ERV1 288 852 -11 265 235 106 12 chrX 43961945 43962030 -118637900 + L2 LINE L2 3205 3297 -16 22 0 0 0 chrX 43962051 43962073 -118637857 + AT_rich Low_complexity Low_complexity 1 22 0 2062 108 3 7 chrX 43962073 43962396 -118637534 - AluSx SINE Alu 0 324 3 991 239 90 4 chrX 43962503 43962758 -118637172 + LTR16A LTR ERVL 2 278 -172 3735 247 67 20 chrX 43962815 43964254 -118635676 - L1MEc LINE L1 -2756 3459 1993 357 256 0 0 chrX 43964250 43964340 -118635590 - L1M4c LINE L1 -3029 3353 3264 * 1882 259 70 1 chrX 43964345 43964366 -118635564 - L1M4c LINE L1 -3044 3338 3320 2657 39 0 16 chrX 43964366 43964678 -118635252 - AluY SINE Alu -4 307 1 1288 123 5 0 chrX 43964688 43964892 -118635038 - L1MA8 LINE L1 -4 6287 6083 1882 259 70 1 chrX 43964892 43965428 -118634502 - L1M4c LINE L1 -3070 3312 2727 312 196 0 0 chrX 43965431 43965482 -118634448 - L1MEc LINE L1 -6311 85 35 * 2573 232 134 49 chrX 43965481 43966314 -118633616 - L1M4c LINE L1 -4249 2133 1373 188 33 0 33 chrX 43966314 43966344 -118633586 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2057 100 4 4 chrX 43966350 43966621 -118633309 - AluSg SINE Alu -37 273 3 2573 232 134 49 chrX 43966621 43966923 -118633007 - L1M4c LINE L1 -5013 1369 795 310 250 0 0 chrX 43966944 43967024 -118632906 - L1MA9 LINE L1 -38 6274 6195 * 503 286 77 93 chrX 43967020 43967624 -118632306 - L1MDa LINE L1 -5434 1096 57 2259 103 0 20 chrX 43971035 43971336 -118628594 - AluSg SINE Alu -15 295 1 2462 100 42 31 chrX 43975144 43975504 -118624426 + THE1B LTR MaLR 1 364 0 326 224 0 26 chrX 43978347 43978423 -118621507 + L2 LINE L2 3197 3270 -2 232 304 51 0 chrX 43978425 43978504 -118621426 + L1ME LINE L1 5615 5697 -424 2915 84 38 5 chrX 43978638 43979030 -118620900 - L1PA8 LINE L1 0 6172 5768 3933 74 9 17 chrX 43979031 43979461 -118620469 + L1PA8A LINE L1 5058 5479 -652 2337 85 0 0 chrX 43979461 43979789 -118620141 + AluSq SINE Alu 1 328 0 3933 74 9 17 chrX 43979789 43980075 -118619855 + L1PA8A LINE L1 5479 5766 -365 1423 241 76 32 chrX 43980485 43980892 -118619038 - MER77 LTR ERV1 -6 599 175 551 252 52 19 chrX 43980971 43981126 -118618804 - MER77 LTR ERV1 -393 212 53 651 280 42 17 chrX 43981199 43981438 -118618492 - MIR SINE MIR -3 259 15 1242 265 46 33 chrX 43981773 43981895 -118618035 - L2 LINE L2 0 3313 3194 1139 210 33 9 chrX 43981895 43982081 -118617849 - MER58A DNA MER1_type -2197 223 30 2157 141 0 0 chrX 43982081 43982387 -118617543 + AluSx SINE Alu 1 306 -6 1139 210 33 9 chrX 43982387 43982414 -118617516 - MER58A DNA MER1_type -2390 30 5 1242 265 46 33 chrX 43982414 43982684 -118617246 - L2 LINE L2 -119 3194 2916 658 284 147 21 chrX 43982681 43982966 -118616964 + L2 LINE L2 2987 3307 -6 * 2028 138 92 14 chrX 43982991 43983339 -118616591 - THE1C LTR MaLR 0 375 1 2422 133 54 3 chrX 43983382 43983750 -118616180 + MSTC LTR MaLR 42 428 0 396 0 0 0 chrX 43984292 43984336 -118615594 + (CA)n Simple_repeat Simple_repeat 1 44 0 9585 35 0 0 chrX 43984457 43986354 -118613576 - L1PA3 LINE L1 0 6155 4302 8582 29 3 0 chrX 43986354 43987358 -118612572 + L1PA3 LINE L1 3323 4329 -1817 2266 100 10 0 chrX 43987358 43987658 -118612272 - AluY SINE Alu -8 303 1 532 299 40 17 chrX 43987999 43988173 -118611757 + MIR SINE MIR 85 262 0 2163 107 47 0 chrX 43988478 43988776 -118611154 - AluSx SINE Alu 0 312 1 379 243 27 0 chrX 43989132 43989206 -118610724 - MER5A DNA MER1_type -76 113 38 242 288 25 34 chrX 43989258 43989376 -118610554 + MER117 DNA MER1_type 79 195 -2 351 96 0 0 chrX 43989791 43989843 -118610087 + (GGA)n Simple_repeat Simple_repeat 3 54 0 2137 116 0 31 chrX 43989911 43990229 -118609701 + AluSx SINE Alu 1 308 -4 22130 119 26 11 chrX 43990240 43993698 -118606232 + L1MA2 LINE L1 14 3529 -4036 5781 132 20 4 chrX 43993683 43995121 -118604809 + L1MA2 LINE L1 5723 7181 -542 * 6590 82 12 40 chrX 43995121 43996302 -118603628 + L1PA10 LINE L1 4995 6150 -18 198 0 0 0 chrX 43996302 43996324 -118603606 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 3851 72 47 6 chrX 43996330 43996845 -118603085 + L1MA2 LINE L1 7188 7723 0 469 204 41 0 chrX 43997253 43997351 -118602579 - MIR SINE MIR -65 197 96 190 356 38 23 chrX 43997900 43998032 -118601898 + L2 LINE L2 2724 2857 -457 315 270 108 0 chrX 43998117 43998228 -118601702 - MIR3 SINE MIR -15 193 71 233 274 206 0 chrX 43998843 43998916 -118601014 - MIR3 SINE MIR -6 202 115 1998 152 0 31 chrX 43999001 43999323 -118600607 - AluJo SINE Alu 0 312 1 657 299 97 30 chrX 43999734 44000095 -118599835 - MARNA DNA Mariner -54 532 148 486 292 56 40 chrX 44000184 44000434 -118599496 + MIR SINE MIR 7 260 -2 204 211 0 0 chrX 44000636 44000674 -118599256 + CT-rich Low_complexity Low_complexity 1 38 0 393 277 142 26 chrX 44000900 44001055 -118598875 - MIR SINE MIR -8 254 82 261 364 16 16 chrX 44001564 44001685 -118598245 + MIR SINE MIR 17 137 -125 1545 164 71 11 chrX 44002020 44002289 -118597641 + AluJb SINE Alu 3 287 -25 2210 103 0 26 chrX 44002298 44002610 -118597320 + AluSg SINE Alu 1 304 -6 253 277 40 20 chrX 44003001 44003102 -118596828 + MIR3 SINE MIR 105 207 -1 639 201 17 0 chrX 44003539 44003713 -118596217 + GA-rich Low_complexity Low_complexity 1 177 0 1135 181 144 25 chrX 44003964 44004241 -118595689 + L1MD3 LINE L1 7577 7886 -109 205 279 67 77 chrX 44004275 44004379 -118595551 - L3 LINE CR1 -1430 147 45 526 167 13 0 chrX 44004526 44004604 -118595326 + AluJ/FLAM SINE Alu 2 80 -232 742 264 36 36 chrX 44005091 44005353 -118594577 + MIR SINE MIR 3 262 0 1736 134 46 11 chrX 44005364 44005647 -118594283 + L1MB7 LINE L1 5876 6168 -16 490 230 48 0 chrX 44005755 44005881 -118594049 + MIR SINE MIR 131 262 0 558 287 24 30 chrX 44006008 44006172 -118593758 + MIR SINE MIR 5 167 -95 2419 115 131 11 chrX 44006212 44006594 -118593336 + MSTA LTR MaLR 1 428 0 240 330 0 27 chrX 44006644 44006756 -118593174 + A-rich Low_complexity Low_complexity 3 111 0 1759 139 77 0 chrX 44006998 44007271 -118592659 - AluSp SINE Alu -19 294 1 1103 68 0 0 chrX 44007276 44007408 -118592522 - AluSq/x SINE Alu -180 133 2 1962 161 0 7 chrX 44007467 44007771 -118592159 - AluJo SINE Alu -8 304 3 261 0 0 0 chrX 44008683 44008712 -118591218 + (A)n Simple_repeat Simple_repeat 1 29 0 225 146 0 0 chrX 44009243 44009291 -118590639 + (GA)n Simple_repeat Simple_repeat 2 49 0 596 213 75 25 chrX 44009523 44009683 -118590247 + MLT1B LTR MaLR 4 171 -219 294 216 0 0 chrX 44009707 44009781 -118590149 + T-rich Low_complexity Low_complexity 1 74 0 1067 203 10 0 chrX 44009784 44009981 -118589949 + MLT1B LTR MaLR 192 390 0 2353 152 44 26 chrX 44010353 44010742 -118589188 - MSTD LTR MaLR 0 396 1 1894 206 48 28 chrX 44012241 44012698 -118587232 - MLT1C LTR MaLR -1 466 1 217 317 83 21 chrX 44012932 44013077 -118586853 - MIR SINE MIR -88 174 21 1420 175 73 94 chrX 44013428 44013662 -118586268 - MLT1A2 LTR MaLR 0 374 150 1536 139 31 4 chrX 44013662 44013921 -118586009 - L1MA4 LINE L1 -6 6294 6029 1420 175 73 94 chrX 44013921 44014068 -118585862 - MLT1A2 LTR MaLR -224 150 1 201 314 23 23 chrX 44014124 44014210 -118585720 + MIR SINE MIR 79 164 -98 225 279 13 0 chrX 44014580 44014659 -118585271 + L3b LINE CR1 1311 1390 -193 6066 58 19 26 chrX 44014667 44015438 -118584492 + MER4E LTR ERV1 1 766 0 296 403 16 0 chrX 44015783 44015912 -118584018 - MIR SINE MIR -130 132 2 409 350 52 38 chrX 44015993 44016284 -118583646 + L2 LINE L2 2464 2758 -556 1859 192 28 11 chrX 44016291 44016650 -118583280 + MLT1A1 LTR MaLR 1 365 0 301 243 74 128 chrX 44016688 44016984 -118582946 + L2 LINE L2 2933 3212 -60 15158 147 24 48 chrX 44018419 44018579 -118581351 - L1MA5 LINE L1 -3 6297 6135 2329 103 0 3 chrX 44018579 44018889 -118581041 + AluSg SINE Alu 2 310 0 15158 147 24 48 chrX 44018889 44020569 -118579361 - L1MA5 LINE L1 -165 6135 4416 297 0 0 0 chrX 44020569 44020602 -118579328 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 15158 147 24 48 chrX 44020602 44022498 -118577432 - L1MA5 LINE L1 -1884 4416 2676 2210 129 3 0 chrX 44022498 44022809 -118577121 + AluSx SINE Alu 1 312 0 15158 147 24 48 chrX 44022809 44023187 -118576743 - L1MA5 LINE L1 -3624 2676 2290 1907 141 0 0 chrX 44023969 44024295 -118575635 + AluJb SINE Alu 1 326 0 265 276 218 0 chrX 44024456 44024543 -118575387 - MER91C DNA MER1_type -32 108 3 3115 159 26 110 chrX 44025297 44025951 -118573979 + MER77 LTR ERV1 3 601 -4 364 303 33 35 chrX 44026978 44027145 -118572785 - MIR SINE MIR -67 141 18 240 290 14 14 chrX 44027365 44027434 -118572496 + L2 LINE L2 3183 3251 -21 291 290 176 23 chrX 44027570 44027701 -118572229 + MIR SINE MIR 92 242 -20 249 273 38 91 chrX 44029058 44029190 -118570740 - MIR SINE MIR -112 150 26 2123 151 0 0 chrX 44029796 44030108 -118569822 + AluSx SINE Alu 1 312 0 2628 139 148 17 chrX 44031282 44031665 -118568265 - MLT2B1 LTR ERVL 0 520 66 1297 176 120 50 chrX 44031665 44032006 -118567924 - MLT1A1 LTR MaLR 0 365 1 2628 139 148 17 chrX 44032006 44032082 -118567848 - MLT2B1 LTR ERVL -454 66 1 2013 144 0 22 chrX 44032418 44032737 -118567193 - AluJb SINE Alu 0 312 1 1277 185 14 149 chrX 44033159 44033530 -118566400 - MLT1A1 LTR MaLR 0 365 56 2310 102 0 0 chrX 44033530 44033825 -118566105 + AluSc SINE Alu 3 297 -12 1277 185 14 149 chrX 44033825 44033875 -118566055 - MLT1A1 LTR MaLR -309 56 1 2668 270 31 71 chrX 44034346 44035332 -118564598 + L1M4b LINE L1 11 1202 -5657 1411 181 17 148 chrX 44035527 44035565 -118564365 - MLT1A1 LTR MaLR 0 365 324 2067 147 0 0 chrX 44035565 44035865 -118564065 + AluSx SINE Alu 1 300 -12 1411 181 17 148 chrX 44035865 44036246 -118563684 - MLT1A1 LTR MaLR -41 324 1 1654 197 33 76 chrX 44036358 44036636 -118563294 + L1M4b LINE L1 1206 1456 -5403 1828 175 0 14 chrX 44036636 44036933 -118562997 + AluJo SINE Alu 1 293 -19 1654 197 33 76 chrX 44036933 44037141 -118562789 + L1M4b LINE L1 1456 1671 -5188 3021 179 2 0 chrX 44037156 44037691 -118562239 + L1 LINE L1 3682 4217 -1929 7064 162 153 35 chrX 44037691 44039222 -118560708 - MER52A LTR ERV1 0 1755 45 202 283 17 0 chrX 44039544 44039604 -118560326 + (CCA)n Simple_repeat Simple_repeat 3 63 0 299 175 16 0 chrX 44039656 44039719 -118560211 + L1 LINE L1 4214 4277 -1869 384 219 95 19 chrX 44039724 44039829 -118560101 + MER67A LTR ERV1 431 543 0 2505 160 52 27 chrX 44040070 44040513 -118559417 - MSTB2 LTR MaLR 0 457 4 1223 201 44 103 chrX 44041053 44041543 -118558387 - LTR34 LTR ERV1 -4 695 136 4829 116 31 25 chrX 44041604 44042121 -118557809 + LTR8 LTR ERV1 1 524 -167 2342 111 0 0 chrX 44042121 44042427 -118557503 + AluSx SINE Alu 1 306 -6 4829 116 31 25 chrX 44042427 44042596 -118557334 + LTR8 LTR ERV1 524 691 0 404 164 25 115 chrX 44042621 44042656 -118557274 - MER4C LTR ERV1 -349 116 79 1860 118 0 49 chrX 44042656 44042943 -118556987 + AluSx SINE Alu 1 273 -39 404 164 25 115 chrX 44042943 44043029 -118556901 - MER4C LTR ERV1 -386 79 6 789 260 60 44 chrX 44043132 44043451 -118556479 - LTR33 LTR ERVL -58 463 140 1254 262 99 52 chrX 44043511 44043805 -118556125 + MLT1F1 LTR MaLR 3 282 -285 900 185 135 126 chrX 44043805 44044361 -118555569 - MER34B LTR ERV1 0 565 5 1254 262 99 52 chrX 44044361 44044541 -118555389 + MLT1F1 LTR MaLR 282 507 -60 5842 75 1 0 chrX 44044541 44045231 -118554699 - LTR8 LTR ERV1 0 691 1 1254 262 99 52 chrX 44045231 44045290 -118554640 + MLT1F1 LTR MaLR 507 562 -5 250 309 73 32 chrX 44045284 44045407 -118554523 - LTR33 LTR ERVL -393 128 1 * 2795 92 23 5 chrX 44045432 44045822 -118554108 + MER4E LTR ERV1 1 397 -382 195 114 0 0 chrX 44046186 44046221 -118553709 + (TA)n Simple_repeat Simple_repeat 1 35 0 2410 170 43 47 chrX 44046293 44046780 -118553150 - MER31A LTR ERV1 0 485 1 306 259 129 0 chrX 44046924 44047009 -118552921 + L2 LINE L2 3152 3247 -25 1309 104 21 10 chrX 44047027 44047219 -118552711 + L1M1 LINE L1 15 208 -7357 2635 118 100 5 chrX 44047237 44047628 -118552302 + MSTA LTR MaLR 1 428 0 5960 109 27 11 chrX 44047645 44048648 -118551282 - L1PB2 LINE L1 -1 6150 5126 * 7497 194 44 71 chrX 44048644 44050397 -118549533 + L1M1 LINE L1 730 2417 -5148 1875 150 3 19 chrX 44050397 44050711 -118549219 + AluSq SINE Alu 1 309 -4 7497 194 44 71 chrX 44050711 44051057 -118548873 + L1M1 LINE L1 2417 2771 -4794 3463 176 36 5 chrX 44051056 44051799 -118548131 + L1M1 LINE L1 4226 4991 -2574 * 936 97 8 0 chrX 44051799 44051923 -118548007 + AluY SINE Alu 1 125 -186 469 209 183 20 chrX 44051930 44052083 -118547847 - MER39 LTR ERV1 -526 181 4 1574 175 132 9 chrX 44052178 44052504 -118547426 - MER31B LTR ERV1 0 466 101 376 214 12 32 chrX 44052502 44052619 -118547311 + MER34C LTR ERV1 7 111 -474 * 192 77 0 0 chrX 44052620 44052646 -118547284 + (A)n Simple_repeat Simple_repeat 1 26 0 712 189 49 70 chrX 44052763 44053057 -118546873 + MER34B LTR ERV1 392 565 0 459 196 52 0 chrX 44053057 44053154 -118546776 - MER31B LTR ERV1 -364 102 1 33 43 0 0 chrX 44053430 44053477 -118546453 + AT_rich Low_complexity Low_complexity 1 47 0 930 243 176 52 chrX 44053544 44053964 -118545966 - LTR29 LTR ERV1 -150 472 1 504 148 0 0 chrX 44054104 44054185 -118545745 - AluSp/q SINE Alu -1 312 232 844 113 0 0 chrX 44054198 44054313 -118545617 - AluSg1 SINE Alu -194 115 1 768 134 42 0 chrX 44054314 44054433 -118545497 + MER41A LTR ERV1 431 554 0 250 193 53 0 chrX 44054433 44054487 -118545443 - LTR48 LTR ERV1 -657 130 74 476 124 38 19 chrX 44054519 44054624 -118545306 + LTR37A LTR ERV1 320 426 0 3529 114 9 17 chrX 44055580 44056072 -118543858 + MER34C LTR ERV1 62 551 -34 4350 136 31 50 chrX 44056072 44056866 -118543064 + MER4E LTR ERV1 1 779 0 3529 114 9 17 chrX 44056866 44056901 -118543029 + MER34C LTR ERV1 551 585 0 995 227 0 0 chrX 44057438 44057623 -118542307 + MER5A DNA MER1_type 1 185 -4 279 246 88 26 chrX 44058415 44058529 -118541401 + MER57-int LTR ERV1 5682 5802 -1735 610 12 37 0 chrX 44058534 44058616 -118541314 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 1361 154 75 4 chrX 44059139 44059474 -118540456 + AluJo SINE Alu 40 390 0 329 261 97 22 chrX 44061525 44061659 -118538271 + MIR SINE MIR 89 232 -30 195 262 49 49 chrX 44061810 44061871 -118538059 + L3 LINE CR1 150 210 -1367 1566 77 91 0 chrX 44062105 44062313 -118537617 - MER30 DNA MER1_type 0 230 4 531 207 110 18 chrX 44062330 44062494 -118537436 + MIR SINE MIR 84 262 0 630 193 9 0 chrX 44064345 44064454 -118535476 + Tigger3(Golem) DNA MER2_type 1 110 -2919 347 190 0 0 chrX 44064459 44064517 -118535413 + Tigger3(Golem) DNA MER2_type 85 142 -2887 * 1589 73 0 10 chrX 44064514 44064720 -118535210 + Tigger3(Golem) DNA MER2_type 2781 2984 -45 1205 62 0 0 chrX 44064728 44064872 -118535058 + AluSg/x SINE Alu 158 301 -11 1720 116 160 25 chrX 44064872 44065191 -118534739 - MSTA LTR MaLR -66 362 1 405 145 0 26 chrX 44065247 44065323 -118534607 + MER53 DNA DNA 115 188 -1 1739 161 139 3 chrX 44065327 44065657 -118534273 - MER89 LTR ERV1 0 559 185 3804 156 17 3 chrX 44065720 44066473 -118533457 + L1MB7 LINE L1 5323 6137 -29 317 247 21 145 chrX 44067129 44067255 -118532675 - MER5B DNA MER1_type -6 172 74 1985 129 3 14 chrX 44067255 44067430 -118532500 - AluSx SINE Alu 0 308 136 2388 92 0 0 chrX 44067430 44067734 -118532196 - AluY SINE Alu -7 304 1 1985 129 3 14 chrX 44067734 44067869 -118532061 - AluSx SINE Alu -172 136 1 317 247 21 145 chrX 44067869 44067927 -118532003 - MER5B DNA MER1_type -104 74 10 1603 126 49 8 chrX 44067944 44068190 -118531740 + L1MC/D LINE L1 5450 5705 -628 413 255 14 101 chrX 44068176 44068297 -118531633 - L1MDb LINE L1 -5308 1101 1004 * 2265 107 0 0 chrX 44068297 44068588 -118531342 - AluSg1 SINE Alu -18 291 1 413 255 14 101 chrX 44068588 44068674 -118531256 - L1MDb LINE L1 -5405 1004 912 1575 181 20 23 chrX 44068681 44068984 -118530946 - AluJo SINE Alu -10 302 1 1097 229 71 34 chrX 44068993 44069205 -118530725 - L1MDa LINE L1 -5109 1431 1228 2174 107 7 3 chrX 44069205 44069495 -118530435 - AluSx SINE Alu -21 291 1 1097 229 71 34 chrX 44069495 44069689 -118530241 - L1MDa LINE L1 -5312 1228 1010 913 129 34 0 chrX 44070858 44071005 -118528925 + AluJb SINE Alu 140 291 -21 450 0 0 0 chrX 44071956 44072006 -118527924 + (TG)n Simple_repeat Simple_repeat 2 51 0 188 352 56 0 chrX 44072141 44072212 -118527718 - MIR SINE MIR -116 146 72 672 102 11 0 chrX 44073132 44073249 -118526681 + FLAM_A SINE Alu 25 142 0 424 91 0 39 chrX 44073321 44073398 -118526532 + L1MB2 LINE L1 6098 6171 0 588 196 12 168 chrX 44073448 44073852 -118526078 - L1MC4 LINE L1 0 8042 7702 2046 124 0 31 chrX 44073852 44074174 -118525756 - AluSx SINE Alu 0 312 1 246 290 0 0 chrX 44074177 44074246 -118525684 - L1MC4 LINE L1 -467 7575 7507 1863 160 7 0 chrX 44074836 44075130 -118524800 - AluSx SINE Alu -15 297 2 914 144 8 0 chrX 44075154 44075286 -118524644 - AluSq/x SINE Alu -179 133 1 737 229 18 13 chrX 44075311 44075498 -118524432 - L1MC4 LINE L1 -207 7678 7416 318 148 0 0 chrX 44075873 44075927 -118524003 + (TA)n Simple_repeat Simple_repeat 1 54 0 274 233 47 0 chrX 44075930 44076016 -118523914 + L1MC4 LINE L1 6614 6703 -1339 1011 161 0 0 chrX 44076025 44076205 -118523725 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chrX 44076205 44076232 -118523698 + (T)n Simple_repeat Simple_repeat 1 27 0 2081 135 0 0 chrX 44076431 44076720 -118523210 - AluSx SINE Alu -23 289 1 228 322 82 7 chrX 44077011 44077157 -118522773 + MIR3 SINE MIR 52 208 0 991 183 0 59 chrX 44077385 44077587 -118522343 - AluJb SINE Alu -38 274 85 672 308 59 7 chrX 44078290 44078579 -118521351 - L1M4 LINE L1 -1658 4488 4185 979 106 0 0 chrX 44078597 44078729 -118521201 - AluJb SINE Alu -180 132 1 605 293 108 3 chrX 44078749 44079046 -118520884 - L1M4 LINE L1 -1978 4168 3841 1628 175 14 20 chrX 44079050 44079342 -118520588 - AluJb SINE Alu -9 303 14 2464 152 0 0 chrX 44079355 44079731 -118520199 - MER41D LTR ERV1 -181 376 1 865 231 20 43 chrX 44079731 44079854 -118520076 - L1MDa LINE L1 -4986 1554 1430 1531 189 10 23 chrX 44079854 44080160 -118519770 - AluJo SINE Alu -10 302 1 865 231 20 43 chrX 44080160 44080339 -118519591 - L1MDa LINE L1 -5110 1430 1259 4039 131 11 23 chrX 44080366 44081006 -118518924 + L1MC1 LINE L1 5696 6327 -6 23 68 0 0 chrX 44081006 44081050 -118518880 + AT_rich Low_complexity Low_complexity 1 44 0 853 222 29 54 chrX 44081060 44081218 -118518712 + L1MB7 LINE L1 2170 2320 -3826 2431 85 0 0 chrX 44081218 44081513 -118518417 + AluSg SINE Alu 1 295 -15 853 222 29 54 chrX 44081513 44081633 -118518297 + L1MB7 LINE L1 2320 2441 -3705 * 6032 196 38 25 chrX 44081618 44082568 -118517362 + L1MB7 LINE L1 3881 4864 -1378 660 187 49 24 chrX 44082568 44082691 -118517239 - FLAM_C SINE Alu -6 127 2 6032 196 38 25 chrX 44082691 44083417 -118516513 + L1MB7 LINE L1 4864 5579 -663 262 247 0 47 chrX 44083413 44083498 -118516432 + L1ME1 LINE L1 5992 6072 -94 * 192 40 0 0 chrX 44083507 44083532 -118516398 + (CA)n Simple_repeat Simple_repeat 2 26 0 7167 125 8 11 chrX 44083553 44085067 -118514863 + L1MA3 LINE L1 4796 6305 0 1425 194 96 97 chrX 44085371 44085912 -118514018 + MER66A LTR ERV1 97 474 -4 225 0 0 0 chrX 44086244 44086269 -118513661 + (A)n Simple_repeat Simple_repeat 1 25 0 2738 172 24 4 chrX 44086775 44087229 -118512701 + MER6 DNA MER2_type 5 467 -398 324 143 0 0 chrX 44088551 44088607 -118511323 + (GGGGA)n Simple_repeat Simple_repeat 1 56 0 381 321 75 36 chrX 44089033 44089285 -118510645 + MLT1K LTR MaLR 3 264 -324 299 286 11 22 chrX 44089318 44089409 -118510521 + MLT1K LTR MaLR 434 523 -65 220 291 101 0 chrX 44090996 44091075 -118508855 - L2 LINE L2 -2 3270 3184 248 290 0 14 chrX 44091354 44091423 -118508507 - MIR3 SINE MIR -41 167 100 2570 71 3 0 chrX 44092226 44092536 -118507394 + AluSp SINE Alu 2 312 -1 2322 85 14 3 chrX 44092550 44092845 -118507085 + AluSc SINE Alu 1 298 -11 1902 142 7 3 chrX 44093086 44093374 -118506556 + AluJb SINE Alu 1 289 -23 3074 167 31 0 chrX 44093563 44094103 -118505827 + L1MB7 LINE L1 5616 6172 -12 1058 116 33 128 chrX 44094149 44094219 -118505711 + MER20 DNA MER1_type 1 76 -143 762 176 0 22 chrX 44094219 44094355 -118505575 - FLAM_C SINE Alu 0 133 1 2369 101 0 3 chrX 44094365 44094671 -118505259 - AluSp SINE Alu -7 306 2 1058 116 33 128 chrX 44094671 44094831 -118505099 + MER20 DNA MER1_type 85 219 0 1616 198 16 3 chrX 44094874 44095182 -118504748 - AluJo SINE Alu 0 312 1 1443 198 87 57 chrX 44096106 44096510 -118503420 + LOR1b LTR ERV1 46 461 0 620 209 85 13 chrX 44096510 44096663 -118503267 + L1ME1 LINE L1 5839 6002 -164 830 180 0 12 chrX 44096686 44096847 -118503083 + L1MA10 LINE L1 6176 6334 0 1527 134 0 5 chrX 44096882 44097099 -118502831 + AluSq SINE Alu 1 216 -97 213 300 0 12 chrX 44097404 44097484 -118502446 + (CAG)n Simple_repeat Simple_repeat 1 79 0 26 0 0 0 chrX 44102107 44102133 -118497797 + AT_rich Low_complexity Low_complexity 1 26 0 2467 93 0 0 chrX 44102133 44102445 -118497485 + AluSx SINE Alu 1 312 0 307 189 103 16 chrX 44103882 44103998 -118495932 - MIR SINE MIR -66 142 66 182 65 65 0 chrX 44104150 44104181 -118495749 + CT-rich Low_complexity Low_complexity 2 34 0 2307 113 0 0 chrX 44104936 44105245 -118494685 + AluSq SINE Alu 3 311 -2 273 29 0 0 chrX 44105332 44105366 -118494564 + (TG)n Simple_repeat Simple_repeat 2 35 0 219 125 0 0 chrX 44105368 44105408 -118494522 + (GA)n Simple_repeat Simple_repeat 1 40 0 676 182 33 0 chrX 44105756 44105877 -118494053 + FRAM SINE Alu 22 146 -30 2030 133 0 13 chrX 44105906 44106207 -118493723 + AluSx SINE Alu 1 297 -15 2215 135 3 0 chrX 44106283 44106616 -118493314 + LTR64 LTR ERVK 1 334 -224 2143 111 69 14 chrX 44106609 44106713 -118493217 + LTR44 LTR ERV1 138 235 -284 * 2130 122 0 3 chrX 44106713 44107009 -118492921 + AluSx SINE Alu 1 295 -17 2143 111 69 14 chrX 44107009 44107266 -118492664 + LTR44 LTR ERV1 235 519 0 501 189 0 22 chrX 44107476 44107566 -118492364 + MER21B LTR ERV1 3 90 -773 1471 157 112 4 chrX 44107588 44107855 -118492075 + MER21B LTR ERV1 19 314 -549 1552 36 0 36 chrX 44107855 44108050 -118491880 + L1PA3 LINE L1 5968 6155 0 27 87 0 0 chrX 44108201 44108270 -118491660 + AT_rich Low_complexity Low_complexity 1 69 0 628 237 19 6 chrX 44108322 44108478 -118491452 + MIR SINE MIR 70 227 -35 542 272 15 41 chrX 44108538 44108733 -118491197 + MIR SINE MIR 40 229 -33 2512 147 54 7 chrX 44108843 44109252 -118490678 - MSTC LTR MaLR 0 428 1 453 210 10 10 chrX 44109354 44109454 -118490476 - L2 LINE L2 0 3313 3214 736 243 131 82 chrX 44109464 44110621 -118489309 + MER52A-int LTR ERV1 45 1444 -4502 1816 160 3 7 chrX 44110952 44111246 -118488684 + AluJb SINE Alu 1 293 -19 1015 23 15 0 chrX 44111246 44111376 -118488554 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 2236 188 65 105 chrX 44111489 44112024 -118487906 + MER52A-int LTR ERV1 834 1389 -3547 1528 161 92 4 chrX 44112024 44112313 -118487617 + AluJb SINE Alu 1 312 0 2236 188 65 105 chrX 44112313 44112505 -118487425 + MER52A-int LTR ERV1 1389 1423 -3513 1612 142 4 0 chrX 44112505 44112758 -118487172 + AluJb SINE Alu 51 304 0 2236 188 65 105 chrX 44112758 44113012 -118486918 + MER52A-int LTR ERV1 1423 1686 -3250 180 0 0 0 chrX 44113033 44113053 -118486877 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2209 97 0 7 chrX 44113057 44113346 -118486584 - AluSx SINE Alu -25 287 1 1378 219 78 66 chrX 44113357 44113997 -118485933 + MER52A-int LTR ERV1 1686 2333 -2603 366 236 57 16 chrX 44114134 44114257 -118485673 + MER52A-int LTR ERV1 2391 2518 -2418 3518 25 0 0 chrX 44114257 44114662 -118485268 + L1PA2 LINE L1 5751 6155 0 2239 167 19 52 chrX 44114672 44114707 -118485223 + MER52A-int LTR ERV1 2509 2544 -2392 1428 111 38 46 chrX 44114707 44114809 -118485121 + L1MA4 LINE L1 6037 6138 -162 1928 172 0 3 chrX 44114809 44115106 -118484824 + AluJb SINE Alu 1 296 -16 1428 111 38 46 chrX 44115106 44115264 -118484666 + L1MA4 LINE L1 6138 6295 -5 2239 167 19 52 chrX 44115264 44115749 -118484181 + MER52A-int LTR ERV1 2544 3012 -1924 600 159 71 32 chrX 44115749 44115875 -118484055 + FLAM_C SINE Alu 2 132 -11 4652 166 54 99 chrX 44115882 44116264 -118483666 + MER52A-int LTR ERV1 2998 3396 -1540 2195 106 10 0 chrX 44116264 44116566 -118483364 + AluSx SINE Alu 1 305 -7 4652 166 54 99 chrX 44116566 44117290 -118482640 + MER52A-int LTR ERV1 3396 4151 -785 2086 109 4 0 chrX 44117290 44117566 -118482364 + AluSq SINE Alu 11 287 -26 4652 166 54 99 chrX 44117566 44117581 -118482349 + MER52A-int LTR ERV1 4151 4165 -771 1716 153 8 0 chrX 44117581 44117843 -118482087 + AluSx SINE Alu 11 274 -38 189 0 0 0 chrX 44117849 44117870 -118482060 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 4652 166 54 99 chrX 44117870 44118050 -118481880 + MER52A-int LTR ERV1 4170 4249 -687 319 218 138 11 chrX 44118056 44118143 -118481787 + LTR37A LTR ERV1 4 101 -325 798 214 153 98 chrX 44118146 44118533 -118481397 + MER52A-int LTR ERV1 4325 4732 -204 516 261 15 0 chrX 44118551 44118681 -118481249 - MER34 LTR ERV1 -410 132 1 266 303 10 20 chrX 44119007 44119106 -118480824 - MIR3 SINE MIR -50 158 61 2284 123 3 0 chrX 44119119 44119486 -118480444 - AluSx SINE Alu 0 368 1 8188 183 104 11 chrX 44120134 44121739 -118478191 + MER52A LTR ERV1 1 1755 0 4672 134 45 82 chrX 44121822 44122760 -118477170 - MER4D LTR ERV1 0 903 1 236 255 66 38 chrX 44122764 44122870 -118477060 + L1ME1 LINE L1 3248 3356 -2790 257 230 81 0 chrX 44122932 44123006 -118476924 + L1ME1 LINE L1 4672 4751 -1395 1996 166 168 109 chrX 44123007 44123498 -118476432 - MLT1E2 LTR MaLR -2 624 92 1936 157 0 3 chrX 44123498 44123803 -118476127 + AluJo SINE Alu 6 309 -3 1996 166 168 109 chrX 44123803 44123896 -118476034 - MLT1E2 LTR MaLR -534 92 6 4330 185 34 27 chrX 44123902 44125307 -118474623 + L1ME1 LINE L1 4747 6161 -5 2193 97 3 17 chrX 44125498 44125796 -118474134 + AluSx SINE Alu 1 294 -18 594 213 0 0 chrX 44126317 44126425 -118473505 - FRAM SINE Alu -9 167 60 1344 224 8 73 chrX 44126425 44126809 -118473121 + LTR37B LTR ERV1 48 406 -62 587 278 76 7 chrX 44126819 44127174 -118472756 + LTR16A LTR ERVL 9 450 0 243 261 0 31 chrX 44127195 44127209 -118472721 + GA-rich Low_complexity Low_complexity 2 15 -49 2068 116 4 0 chrX 44127209 44127484 -118472446 + AluY SINE Alu 1 276 -35 243 261 0 31 chrX 44127484 44127534 -118472396 + GA-rich Low_complexity Low_complexity 15 64 0 930 283 28 47 chrX 44127534 44127894 -118472036 + HERV16 LTR ERVL 38 390 -4606 304 253 12 12 chrX 44127901 44127984 -118471946 - HERV16 LTR ERVL -2258 3396 3314 1718 150 22 76 chrX 44127984 44128166 -118471764 - L1MB2 LINE L1 -37 6134 6058 1930 167 0 16 chrX 44128166 44128478 -118471452 - AluJb SINE Alu 0 312 6 1718 150 22 76 chrX 44128478 44128711 -118471219 - L1MB2 LINE L1 -113 6058 5814 443 149 0 0 chrX 44128733 44128800 -118471130 - AluJb SINE Alu -38 274 208 3911 265 53 50 chrX 44128888 44129233 -118470697 - HERV16 LTR ERVL -1900 3096 2754 1814 149 76 0 chrX 44129233 44129521 -118470409 - AluSx SINE Alu -2 310 1 3911 265 53 50 chrX 44129521 44130174 -118469756 - HERV16 LTR ERVL -2242 2754 2251 2752 124 64 31 chrX 44130174 44130370 -118469560 + MLT1C LTR MaLR 1 189 -278 393 70 0 0 chrX 44130370 44130427 -118469503 + (CA)n Simple_repeat Simple_repeat 1 57 0 2752 124 64 31 chrX 44130427 44130682 -118469248 + MLT1C LTR MaLR 189 467 0 3911 265 53 50 chrX 44130682 44131037 -118468893 - HERV16 LTR ERVL -2745 2251 1899 628 283 25 58 chrX 44131184 44131341 -118468589 + LTR16A LTR ERVL 103 249 -201 1121 188 81 75 chrX 44131341 44131713 -118468217 + MLT1A2 LTR MaLR 1 374 0 628 283 25 58 chrX 44131713 44131831 -118468099 + LTR16A LTR ERVL 249 369 -81 854 126 0 22 chrX 44131847 44131982 -118467948 + FLAM_C SINE Alu 2 133 0 1180 175 5 5 chrX 44132009 44132215 -118467715 + AluJo SINE Alu 85 290 -22 315 250 0 0 chrX 44132274 44132342 -118467588 + LTR37B LTR ERV1 401 468 0 1866 36 5 0 chrX 44134209 44134432 -118465498 + L1PA8 LINE L1 5949 6172 0 2420 79 0 0 chrX 44135645 44135937 -118463993 + AluSx SINE Alu 1 292 -20 7230 55 7 0 chrX 44136018 44137476 -118462454 + L1PA7 LINE L1 4692 6154 0 475 258 0 8 chrX 44138887 44139015 -118460915 + L2 LINE L2 3184 3310 -3 2216 95 23 0 chrX 44139074 44139378 -118460552 + AluSp SINE Alu 3 313 0 29971 38 3 0 chrX 44139571 44145714 -118454216 + L1PA4 LINE L1 1 6152 -3 375 23 0 0 chrX 44145817 44145861 -118454069 + (TG)n Simple_repeat Simple_repeat 2 45 0 2158 119 7 3 chrX 44146504 44146806 -118453124 - AluSx SINE Alu -9 303 1 936 238 8 31 chrX 44146849 44147110 -118452820 - MIR SINE MIR -5 257 3 230 231 154 8 chrX 44147510 44147627 -118452303 + MER113 DNA MER1_type? 91 224 -297 31 26 0 0 chrX 44147657 44147695 -118452235 + AT_rich Low_complexity Low_complexity 1 38 0 1774 165 7 3 chrX 44147695 44147980 -118451950 - AluJo SINE Alu -26 286 1 599 182 0 88 chrX 44147985 44148144 -118451786 + MER104 DNA Tc2 36 180 0 35 0 0 0 chrX 44148169 44148204 -118451726 + AT_rich Low_complexity Low_complexity 1 35 0 394 312 38 0 chrX 44148277 44148434 -118451496 - MIR SINE MIR -40 222 60 470 17 17 0 chrX 44149034 44149093 -118450837 + (TG)n Simple_repeat Simple_repeat 2 61 0 324 143 0 0 chrX 44149094 44149150 -118450780 + (GA)n Simple_repeat Simple_repeat 2 57 0 334 310 55 21 chrX 44149298 44149443 -118450487 + MIR SINE MIR 12 161 -101 919 159 25 4 chrX 44149654 44149830 -118450100 + MLT1D LTR MaLR 1 150 -355 1531 183 37 86 chrX 44149832 44150400 -118449530 + L1M4 LINE L1 2768 3307 -2839 715 191 33 60 chrX 44150400 44150532 -118449398 + L1MB2 LINE L1 5993 6120 -51 1830 185 0 3 chrX 44150532 44150845 -118449085 + AluJo SINE Alu 1 312 0 715 191 33 60 chrX 44150845 44150895 -118449035 + L1MB2 LINE L1 6120 6170 -1 213 68 27 68 chrX 44151944 44152018 -118447912 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 1995 132 0 14 chrX 44152034 44152321 -118447609 - AluSx SINE Alu -29 283 1 2125 103 3 7 chrX 44152524 44152816 -118447114 + AluSx SINE Alu 22 312 0 1898 159 19 7 chrX 44152854 44153162 -118446768 + AluSx SINE Alu 1 312 0 808 241 68 2 chrX 44153191 44153430 -118446500 + L1ME LINE L1 5353 5610 -517 271 273 39 12 chrX 44153536 44153653 -118446277 + MIR SINE MIR 34 150 -63 2197 93 0 4 chrX 44153721 44153999 -118445931 + AluSq SINE Alu 1 277 -36 527 0 16 0 chrX 44154006 44154069 -118445861 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 1896 133 8 0 chrX 44154079 44154343 -118445587 + AluSx SINE Alu 1 266 -46 225 171 29 14 chrX 44154346 44154416 -118445514 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 234 204 19 0 chrX 44154576 44154630 -118445300 + (TTG)n Simple_repeat Simple_repeat 1 55 0 2111 176 75 45 chrX 44154803 44155270 -118444660 + MER77 LTR ERV1 116 596 -9 27 0 0 0 chrX 44155361 44155388 -118444542 + AT_rich Low_complexity Low_complexity 1 27 0 2284 120 0 0 chrX 44155612 44155911 -118444019 + AluSx SINE Alu 1 299 -13 756 128 8 8 chrX 44155911 44156021 -118443909 - FLAM_C SINE Alu -198 114 2 270 252 71 71 chrX 44156249 44156404 -118443526 - MIR SINE MIR -59 203 49 2200 189 92 15 chrX 44157127 44157583 -118442347 - LTR42 LTR ERVL -2 493 3 298 263 128 64 chrX 44158321 44158524 -118441406 + L1M4 LINE L1 3595 3824 -2322 1523 196 22 0 chrX 44158524 44158800 -118441130 + AluJb SINE Alu 3 284 -28 298 263 128 64 chrX 44158800 44158893 -118441037 + L1M4 LINE L1 3824 3910 -2236 495 264 108 17 chrX 44159037 44159268 -118440662 + L1M4 LINE L1 3918 4169 -1977 642 222 0 0 chrX 44159293 44159419 -118440511 + AluJb SINE Alu 7 132 -180 463 296 94 23 chrX 44159420 44159728 -118440202 + L1M4 LINE L1 4164 4493 -1653 405 0 0 0 chrX 44159839 44159884 -118440046 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1885 105 18 11 chrX 44159886 44160163 -118439767 - AluSg SINE Alu -31 279 1 998 216 5 28 chrX 44160764 44160982 -118438948 + AluSg/x SINE Alu 85 297 -15 1735 171 0 0 chrX 44161640 44161927 -118438003 + AluSx SINE Alu 1 287 -25 696 259 11 0 chrX 44162527 44162701 -118437229 + L1MC4 LINE L1 7503 7678 -364 432 202 0 0 chrX 44162731 44162815 -118437115 + AluS SINE Alu 2 85 -228 1032 136 0 6 chrX 44162815 44162984 -118436946 + AluSc SINE Alu 141 308 -1 448 223 36 62 chrX 44162989 44163182 -118436748 + L1MC4 LINE L1 7706 7893 -149 243 61 0 0 chrX 44163207 44163240 -118436690 + (TG)n Simple_repeat Simple_repeat 1 33 0 336 233 47 19 chrX 44163258 44163365 -118436565 + L1MC4 LINE L1 7783 8019 -23 394 107 0 40 chrX 44163442 44163517 -118436413 - L1MB2 LINE L1 -2 6169 6098 601 233 0 0 chrX 44163592 44163763 -118436167 - FLAM_A SINE Alu 0 171 1 366 107 0 0 chrX 44164862 44164918 -118435012 + (CA)n Simple_repeat Simple_repeat 2 57 0 877 138 12 30 chrX 44165853 44166020 -118433910 - FRAM SINE Alu -2 164 1 22 35 0 0 chrX 44166322 44166351 -118433579 + GC_rich Low_complexity Low_complexity 1 29 0 365 231 25 41 chrX 44167102 44167223 -118432707 + L1MDb LINE L1 1293 1411 -4998 1812 174 44 14 chrX 44167235 44167598 -118432332 + MER41D LTR ERV1 1 374 -183 1474 179 0 49 chrX 44167613 44167898 -118432032 + AluJb SINE Alu 14 284 -28 580 277 110 20 chrX 44167926 44168226 -118431704 + L1M4 LINE L1 3841 4167 -1979 681 168 8 8 chrX 44168248 44168379 -118431551 + AluJb SINE Alu 2 132 -180 377 299 60 63 chrX 44168401 44168543 -118431387 + L1M4 LINE L1 4189 4330 -1816 2165 111 3 0 chrX 44168543 44168849 -118431081 + AluSg1 SINE Alu 3 309 0 377 299 60 63 chrX 44168849 44169007 -118430923 + L1M4 LINE L1 4330 4488 -1658 4652 35 0 0 chrX 44169701 44170244 -118429686 + L1PA2 LINE L1 5612 6154 -1 1074 201 0 27 chrX 44170285 44170504 -118429426 + AluJo SINE Alu 85 297 -15 1559 216 0 0 chrX 44171162 44171449 -118428481 + AluSx SINE Alu 1 287 -25 712 261 6 0 chrX 44172043 44172223 -118427707 + L1MC4 LINE L1 7498 7678 -364 3353 104 19 2 chrX 44172278 44172757 -118427173 - LTR15 LTR ERV1 -6 487 1 13660 84 1 2 chrX 44172757 44174514 -118425416 - HERV15 LTR ERV1 0 8735 6982 * 23317 73 14 2 chrX 44174507 44177460 -118422470 - HERV15 LTR ERV1 -1973 6762 3776 6863 189 26 18 chrX 44177460 44178895 -118421035 - HERV15 LTR ERV1 -5358 3377 1932 1322 281 19 3 chrX 44178884 44179204 -118420726 - HERV15 LTR ERV1 -7039 1387 1063 * 8395 105 37 14 chrX 44179282 44180541 -118419389 - HERV15 LTR ERV1 -7446 1289 1 3539 91 10 2 chrX 44180548 44181030 -118418900 - LTR15 LTR ERV1 -7 486 1 1603 160 3 58 chrX 44181030 44181342 -118418588 + AluSx SINE Alu 17 311 -1 654 217 26 99 chrX 44181342 44181567 -118418363 + L1MC4 LINE L1 7698 7891 -151 180 77 0 0 chrX 44181567 44181593 -118418337 + (TG)n Simple_repeat Simple_repeat 1 26 0 654 217 26 99 chrX 44181593 44181712 -118418218 + L1MC4 LINE L1 7891 8017 -25 404 91 0 39 chrX 44181792 44181869 -118418061 - L1MB2 LINE L1 0 6171 6098 639 233 0 0 chrX 44181967 44182100 -118417830 - FLAM_A SINE Alu 0 133 1 384 103 0 0 chrX 44183197 44183255 -118416675 + (CA)n Simple_repeat Simple_repeat 2 59 0 769 167 19 19 chrX 44184185 44184347 -118415583 - FRAM SINE Alu -1 165 4 294 244 23 46 chrX 44185487 44185618 -118414312 + L1MDb LINE L1 1289 1416 -4993 2058 169 39 0 chrX 44185624 44185984 -118413946 + MER41D LTR ERV1 1 374 -183 1364 214 6 57 chrX 44185987 44186305 -118413625 + AluJo SINE Alu 1 302 0 600 241 134 31 chrX 44186316 44186607 -118413323 + L1M4 LINE L1 3847 4167 -1979 758 161 8 0 chrX 44186629 44186759 -118413171 + AluJb SINE Alu 2 132 -180 432 288 93 53 chrX 44186760 44186925 -118413005 + L1M4 LINE L1 4153 4310 -1836 2109 123 7 0 chrX 44186925 44187227 -118412703 + AluSg1 SINE Alu 3 306 -3 432 288 93 53 chrX 44187227 44187384 -118412546 + L1M4 LINE L1 4310 4488 -1658 1327 163 0 46 chrX 44188093 44188332 -118411598 + AluJo SINE Alu 85 312 0 13170 145 7 69 chrX 44188342 44191164 -118408766 + L1P3 LINE L1 7 3003 -3458 1048 96 0 7 chrX 44191164 44191299 -118408631 + AluY SINE Alu 1 134 -177 2429 55 0 4 chrX 44191299 44191584 -118408346 + AluY SINE Alu 1 330 -5 460 0 0 0 chrX 44191584 44191635 -118408295 + (TAAA)n Simple_repeat Simple_repeat 2 152 0 13170 145 7 69 chrX 44191641 44192861 -118407069 + L1P3 LINE L1 3001 4024 -2437 982 131 6 25 chrX 44192891 44193051 -118406879 + L1MC1 LINE L1 6177 6333 0 1710 211 60 76 chrX 44193068 44193377 -118406553 + L1M4 LINE L1 3520 3832 -2314 1772 150 18 0 chrX 44193377 44193691 -118406239 + AluSx SINE Alu 1 319 0 1710 211 60 76 chrX 44193691 44193895 -118406035 + L1M4 LINE L1 3832 4025 -2121 2295 70 3 3 chrX 44193895 44194193 -118405737 - AluY SINE Alu -13 298 1 1710 211 60 76 chrX 44194193 44194297 -118405633 + L1M4 LINE L1 4025 4129 -2017 1508 135 8 8 chrX 44194301 44194538 -118405392 + AluJb SINE Alu 1 237 -75 477 272 103 38 chrX 44194541 44194754 -118405176 + L1ME1 LINE L1 5937 6139 -27 1846 149 7 0 chrX 44194799 44195107 -118404823 - AluJb SINE Alu -2 310 1 751 236 109 10 chrX 44195161 44195429 -118404501 - L1ME3A LINE L1 -218 5952 5660 191 327 9 26 chrX 44195948 44196061 -118403869 - MIR SINE MIR -82 180 70 183 156 0 0 chrX 44196518 44196550 -118403380 + GA-rich Low_complexity Low_complexity 3 34 0 2073 114 7 0 chrX 44197193 44197483 -118402447 + AluSx SINE Alu 1 292 -20 435 19 0 0 chrX 44197484 44197536 -118402394 + (GA)n Simple_repeat Simple_repeat 1 52 0 1849 141 0 0 chrX 44197552 44197822 -118402108 + AluJb SINE Alu 15 284 -28 403 311 119 8 chrX 44197933 44198168 -118401762 - MIR SINE MIR 0 262 2 240 278 28 0 chrX 44198257 44198329 -118401601 - MIR SINE MIR -112 150 77 2174 101 0 3 chrX 44198740 44199038 -118400892 - AluSx SINE Alu -15 297 1 547 185 129 138 chrX 44199058 44199398 -118400532 - L1ME3A LINE L1 -66 6104 5768 709 306 127 35 chrX 44199529 44199674 -118400256 - L1ME3A LINE L1 -946 5200 5070 1873 113 55 10 chrX 44199674 44199966 -118399964 - AluSg SINE Alu -5 305 1 709 306 127 35 chrX 44199966 44200417 -118399513 - L1ME3A LINE L1 -1076 5070 4549 1014 254 74 7 chrX 44200422 44200721 -118399209 - L2 LINE L2 -1247 2067 1749 24 0 0 0 chrX 44201353 44201377 -118398553 + AT_rich Low_complexity Low_complexity 1 24 0 193 171 24 0 chrX 44203266 44203307 -118396623 + L2 LINE L2 2501 2542 -772 1090 76 47 41 chrX 44203307 44203330 -118396600 + L1MA2 LINE L1 6132 6153 -151 1941 121 41 0 chrX 44203330 44203620 -118396310 + AluSx SINE Alu 1 302 -10 1090 76 47 41 chrX 44203620 44203768 -118396162 + L1MA2 LINE L1 6153 6304 0 28 0 0 0 chrX 44203768 44203796 -118396134 + AT_rich Low_complexity Low_complexity 1 28 0 774 222 1 10 chrX 44203822 44204013 -118395917 + L1MC4 LINE L1 6570 6842 -1051 2244 99 3 6 chrX 44204014 44204327 -118395603 + AluSx SINE Alu 1 312 0 310 285 121 9 chrX 44204333 44204500 -118395430 + HAL1 LINE L1 1032 3175 -1304 1225 186 40 108 chrX 44204503 44204948 -118394982 + L1MC5 LINE L1 6749 7163 -798 213 98 0 82 chrX 44205006 44205067 -118394863 + (TTAA)n Simple_repeat Simple_repeat 1 56 0 725 228 172 12 chrX 44205094 44205344 -118394586 + L1MC5 LINE L1 7397 7686 -275 334 114 0 0 chrX 44205366 44205410 -118394520 + Alu SINE Alu 1 44 -258 838 148 296 0 chrX 44205410 44205572 -118394358 + AluSg/x SINE Alu 90 299 -10 662 198 65 32 chrX 44205572 44205789 -118394141 + L1MC5 LINE L1 7702 7925 -36 261 0 0 0 chrX 44205792 44205821 -118394109 + (CA)n Simple_repeat Simple_repeat 1 29 0 1197 273 81 17 chrX 44205821 44206332 -118393598 + L2 LINE L2 2563 3133 -180 441 0 0 0 chrX 44206332 44206381 -118393549 + (CA)n Simple_repeat Simple_repeat 2 50 0 1197 273 81 17 chrX 44206381 44206575 -118393355 + L2 LINE L2 3133 3313 0 1781 159 7 0 chrX 44206987 44207277 -118392653 - AluJb SINE Alu -20 292 1 447 239 82 11 chrX 44207555 44207739 -118392191 - L1ME4a LINE L1 0 6121 5925 256 298 193 0 chrX 44207768 44207949 -118391981 - L1ME4a LINE L1 -276 5845 5630 2075 125 0 3 chrX 44207978 44208275 -118391655 + AluSq SINE Alu 1 296 -17 2080 103 0 0 chrX 44208276 44208549 -118391381 + AluSx SINE Alu 1 273 -39 261 0 0 0 chrX 44208561 44208590 -118391340 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2150 103 3 0 chrX 44209131 44209423 -118390507 - AluSx SINE Alu -19 293 1 810 157 0 22 chrX 44209581 44209715 -118390215 - FLAM_C SINE Alu 0 133 3 372 137 107 176 chrX 44209718 44209849 -118390081 - MIR SINE MIR -59 203 82 736 195 32 85 chrX 44212140 44212386 -118387544 + MER112 DNA MER1_type 17 249 -11 756 171 30 43 chrX 44212386 44212550 -118387380 + MIR SINE MIR 59 220 -42 231 286 59 34 chrX 44212507 44212626 -118387304 - MIR3 SINE MIR -10 198 77 * 313 312 9 18 chrX 44212639 44212748 -118387182 + MIR SINE MIR 2 109 -153 696 211 29 39 chrX 44213051 44213255 -118386675 - L2 LINE L2 0 3313 3112 331 328 47 29 chrX 44214258 44214563 -118385367 - L2 LINE L2 -262 3051 2739 336 326 81 29 chrX 44214591 44214763 -118385167 + MIR SINE MIR 63 243 -19 293 185 19 0 chrX 44214852 44214906 -118385024 + L2 LINE L2 3255 3309 -4 547 243 50 7 chrX 44215603 44215774 -118384156 + L1ME3 LINE L1 5986 6158 -4 24 32 0 0 chrX 44215878 44215909 -118384021 + AT_rich Low_complexity Low_complexity 1 31 0 413 252 10 10 chrX 44215926 44216029 -118383901 + MIR SINE MIR 60 162 -100 680 266 145 5 chrX 44216298 44216512 -118383418 - MIR SINE MIR -1 261 18 515 303 95 0 chrX 44217297 44217538 -118382392 + L2 LINE L2 2862 3125 -188 241 279 119 35 chrX 44217543 44217744 -118382186 + L2 LINE L2 3028 3245 -68 248 194 16 32 chrX 44218665 44218761 -118381169 + (CCG)n Simple_repeat Simple_repeat 1 94 0 195 139 0 0 chrX 44218957 44218993 -118380937 + (CGG)n Simple_repeat Simple_repeat 1 36 0 281 202 155 12 chrX 44220561 44220645 -118379285 - MIR SINE MIR -10 252 157 472 202 0 65 chrX 44220693 44220817 -118379113 - MLT1J LTR MaLR -3 508 393 1381 275 58 8 chrX 44220881 44221456 -118378474 + L2 LINE L2 2503 3114 -199 201 121 0 0 chrX 44222296 44222329 -118377601 + (T)n Simple_repeat Simple_repeat 1 33 0 504 335 5 31 chrX 44222872 44223066 -118376864 + MIR SINE MIR 71 259 -3 273 278 5 43 chrX 44224508 44224695 -118375235 + CT-rich Low_complexity Low_complexity 1 180 0 279 211 0 0 chrX 44225110 44225162 -118374768 + MIR SINE MIR 209 260 -2 460 304 118 23 chrX 44225162 44225677 -118374253 - L1ME4a LINE L1 -184 5937 5329 707 333 22 39 chrX 44225682 44225994 -118373936 - L1ME4a LINE L1 -829 5317 5011 695 260 48 32 chrX 44225994 44226244 -118373686 + MIR SINE MIR 7 260 -2 387 301 53 45 chrX 44226368 44226614 -118373316 - L1ME4a LINE L1 -1217 4929 4682 249 279 0 0 chrX 44226715 44226801 -118373129 + CT-rich Low_complexity Low_complexity 1 86 0 196 348 104 37 chrX 44226875 44227010 -118372920 - MIR3 SINE MIR -28 180 37 1512 140 19 8 chrX 44228416 44228673 -118371257 - MLT1C LTR MaLR -1 466 207 896 282 64 6 chrX 44229471 44229829 -118370101 + L2 LINE L2 2264 2642 -672 288 0 0 0 chrX 44230122 44230154 -118369776 + (TG)n Simple_repeat Simple_repeat 2 33 0 556 269 0 7 chrX 44230872 44231013 -118368917 + MIR SINE MIR 61 200 -62 563 210 67 0 chrX 44232183 44232302 -118367628 + MIR SINE MIR 20 146 -116 673 233 7 9 chrX 44232308 44232464 -118367466 - MIR SINE MIR -61 147 7 555 16 0 0 chrX 44232555 44232619 -118367311 + (TC)n Simple_repeat Simple_repeat 1 64 0 217 50 25 25 chrX 44232618 44232658 -118367272 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 2268 90 0 3 chrX 44233580 44233881 -118366049 + AluSg1 SINE Alu 1 300 -9 444 171 276 0 chrX 44233992 44234097 -118365833 - MER45A DNA AcHobo -44 134 1 332 205 259 36 chrX 44234100 44234266 -118365664 - MIR SINE MIR -35 227 25 2254 107 0 0 chrX 44234395 44234705 -118365225 + AluSx SINE Alu 1 310 -2 215 282 176 48 chrX 44235332 44235500 -118364430 + MIR SINE MIR 36 225 -37 216 330 18 0 chrX 44236010 44236122 -118363808 + (CCCTAA)n Simple_repeat Simple_repeat 2 115 0 271 354 17 11 chrX 44236741 44236919 -118363011 + (CCCCAA)n Simple_repeat Simple_repeat 1 179 0 210 234 0 0 chrX 44237700 44237747 -118362183 + (CCCCAG)n Simple_repeat Simple_repeat 6 52 0 189 147 0 0 chrX 44240462 44240496 -118359434 + (CACCC)n Simple_repeat Simple_repeat 2 35 0 1778 130 52 0 chrX 44242555 44242876 -118357054 + AluSx SINE Alu 1 335 0 366 250 119 45 chrX 44242880 44243148 -118356782 + L1MC5 LINE L1 7645 7932 -29 2259 99 0 10 chrX 44243152 44243464 -118356466 + AluSc SINE Alu 1 309 0 245 315 11 43 chrX 44243471 44243655 -118356275 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 390 299 19 22 chrX 44243710 44243967 -118355963 + GA-rich Low_complexity Low_complexity 1 257 -652 1830 170 20 0 chrX 44243967 44244273 -118355657 + AluJb SINE Alu 1 312 0 390 299 19 22 chrX 44244273 44244622 -118355308 + GA-rich Low_complexity Low_complexity 257 909 0 2198 90 0 0 chrX 44244733 44245010 -118354920 + AluSx SINE Alu 1 277 -35 192 40 0 0 chrX 44245011 44245036 -118354894 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 269 311 19 10 chrX 44245089 44245192 -118354738 - MIR SINE MIR -71 191 88 646 264 288 5 chrX 44246065 44246444 -118353486 - L2 LINE L2 -1 3312 2827 471 355 23 14 chrX 44247019 44247236 -118352694 + L1M4 LINE L1 5097 5315 -831 2099 140 3 0 chrX 44247307 44247614 -118352316 - AluSx SINE Alu -4 308 1 928 236 24 5 chrX 44247657 44247865 -118352065 + MIR SINE MIR 24 235 -27 2086 101 14 10 chrX 44248250 44248546 -118351384 - AluSx SINE Alu -15 297 1 2018 136 0 10 chrX 44248546 44248853 -118351077 - AluJb SINE Alu -8 304 1 605 217 97 11 chrX 44249395 44249542 -118350388 - MIR SINE MIR 0 262 96 1881 100 64 18 chrX 44249542 44249823 -118350107 + AluSg SINE Alu 1 294 -16 605 217 97 11 chrX 44249823 44249850 -118350080 - MIR SINE MIR -166 96 73 1283 180 118 37 chrX 44249954 44250226 -118349704 + AluJo SINE Alu 3 296 -6 2292 95 0 22 chrX 44250442 44250758 -118349172 + AluSg SINE Alu 1 309 -1 2335 93 0 3 chrX 44250763 44251065 -118348865 + AluSc SINE Alu 1 301 -8 564 262 143 18 chrX 44251233 44251401 -118348529 - MIR SINE MIR -62 200 12 2316 95 0 0 chrX 44252313 44252619 -118347311 + AluSx SINE Alu 1 306 -6 480 35 0 0 chrX 44252943 44253001 -118346929 + (TG)n Simple_repeat Simple_repeat 2 59 0 443 244 81 56 chrX 44253583 44253743 -118346187 + MIR SINE MIR 97 260 -2 2225 110 0 0 chrX 44253828 44254136 -118345794 + AluSx SINE Alu 1 308 -4 753 164 0 0 chrX 44254162 44254284 -118345646 + FLAM_C SINE Alu 14 135 -8 1000 163 18 0 chrX 44255038 44255204 -118344726 + FRAM SINE Alu 1 161 -15 342 326 61 8 chrX 44255209 44255341 -118344589 - L1M4 LINE L1 -1674 4472 4334 219 340 20 20 chrX 44255782 44255932 -118343998 + (CCCCAA)n Simple_repeat Simple_repeat 5 154 0 327 227 202 34 chrX 44256042 44256161 -118343769 + MIR SINE MIR 11 149 -113 857 213 51 37 chrX 44256163 44256379 -118343551 - MIR SINE MIR -29 233 15 258 350 11 17 chrX 44256443 44256620 -118343310 + (CCCCAA)n Simple_repeat Simple_repeat 5 180 0 2057 17 3 109 chrX 44258895 44259213 -118340717 + AluY SINE Alu 20 306 0 757 157 7 29 chrX 44259218 44259358 -118340572 + FLAM_C SINE Alu 7 143 0 2212 100 0 28 chrX 44259369 44259690 -118340240 + AluSx SINE Alu 1 312 0 2355 77 0 13 chrX 44259959 44260272 -118339658 + AluSg SINE Alu 1 309 -1 185 333 0 13 chrX 44260827 44260902 -118339028 + L2 LINE L2 2965 3038 -234 * 994 251 85 89 chrX 44260889 44261200 -118338730 - L2 LINE L2 0 3313 3003 2018 141 3 7 chrX 44261200 44261506 -118338424 + AluJo SINE Alu 1 305 -7 994 251 85 89 chrX 44261506 44261652 -118338278 - L2 LINE L2 -310 3003 2858 681 254 75 40 chrX 44263088 44263316 -118336614 - MIR SINE MIR -21 241 6 404 275 166 48 chrX 44263243 44263472 -118336458 + MIR SINE MIR 7 262 0 * 495 238 0 9 chrX 44264154 44264259 -118335671 - L2 LINE L2 -3 3310 3207 450 250 0 48 chrX 44264363 44264551 -118335379 + (CCCCAA)n Simple_repeat Simple_repeat 2 180 0 449 279 23 12 chrX 44264573 44264745 -118335185 + (CCCCAA)n Simple_repeat Simple_repeat 1 174 0 2311 96 0 6 chrX 44264794 44265106 -118334824 + AluSg SINE Alu 1 310 0 2257 75 26 10 chrX 44265204 44265509 -118334421 - AluY SINE Alu -1 310 1 1674 230 40 50 chrX 44266440 44266829 -118333101 - L2 LINE L2 -2 3311 2920 2192 109 0 10 chrX 44266829 44267131 -118332799 - AluSq SINE Alu -14 299 1 1674 230 40 50 chrX 44267131 44267166 -118332764 - L2 LINE L2 -393 2920 2886 1434 100 193 28 chrX 44267166 44267415 -118332515 + AluSc SINE Alu 3 292 -7 1674 230 40 50 chrX 44267415 44267660 -118332270 - L2 LINE L2 -427 2886 2638 2253 100 0 7 chrX 44267864 44268174 -118331756 - AluSx SINE Alu -4 308 1 1248 172 9 5 chrX 44268538 44268759 -118331171 + AluJo SINE Alu 86 307 -5 611 213 8 8 chrX 44268820 44268947 -118330983 - L2 LINE L2 -3 3310 3184 225 291 0 0 chrX 44268960 44269015 -118330915 - MIR SINE MIR -28 234 180 330 132 0 0 chrX 44269042 44269095 -118330835 + (GGA)n Simple_repeat Simple_repeat 1 53 0 248 247 41 63 chrX 44269702 44269818 -118330112 - MIR SINE MIR -66 142 30 573 271 99 36 chrX 44271340 44271561 -118328369 + MIR SINE MIR 4 238 -24 2141 108 9 22 chrX 44271569 44271885 -118328045 + AluSx SINE Alu 1 312 0 258 160 20 0 chrX 44271899 44271949 -118327981 + MIR SINE MIR 212 262 0 590 306 46 5 chrX 44271985 44272204 -118327726 - MIR SINE MIR -1 261 34 397 288 166 53 chrX 44273826 44273884 -118326046 - MLT1L LTR MaLR -21 594 544 514 283 11 48 chrX 44273884 44274071 -118325859 - MER104 DNA MER2_type 0 180 1 397 288 166 53 chrX 44274071 44274349 -118325581 - MLT1L LTR MaLR -71 544 220 184 348 0 45 chrX 44274861 44274950 -118324980 + L2 LINE L2 3138 3222 -50 196 146 98 0 chrX 44279270 44279311 -118320619 - MIR3 SINE MIR -48 160 116 210 208 0 0 chrX 44279497 44279550 -118320380 + GA-rich Low_complexity Low_complexity 2 54 0 1708 172 3 3 chrX 44279701 44279986 -118319944 + AluJb SINE Alu 1 285 -27 243 61 0 0 chrX 44279986 44280019 -118319911 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 628 269 30 41 chrX 44280530 44280609 -118319321 + MIR SINE MIR 20 98 -164 2267 85 0 13 chrX 44280609 44280915 -118319015 - AluSx SINE Alu -10 302 1 628 269 30 41 chrX 44280915 44281032 -118318898 + MIR SINE MIR 98 214 -48 21 0 0 0 chrX 44281061 44281082 -118318848 + AT_rich Low_complexity Low_complexity 1 21 0 1940 157 3 0 chrX 44281102 44281408 -118318522 + AluJb SINE Alu 6 312 0 2358 97 3 0 chrX 44282407 44282717 -118317213 - AluSq SINE Alu -2 311 1 480 209 76 9 chrX 44282765 44282870 -118317060 - MIR SINE MIR -63 145 34 204 40 0 0 chrX 44283919 44283944 -118315986 + (GGA)n Simple_repeat Simple_repeat 1 25 0 213 354 0 0 chrX 44283974 44284073 -118315857 + GA-rich Low_complexity Low_complexity 2 100 0 227 306 0 0 chrX 44284495 44284544 -118315386 - L2 LINE L2 -3 3310 3262 777 272 117 11 chrX 44284849 44285209 -118314721 - L2 LINE L2 -413 2901 2504 347 303 59 2 chrX 44285198 44285384 -118314546 - MIR SINE MIR -28 234 2 * 2041 123 0 3 chrX 44285462 44285755 -118314175 + AluJb SINE Alu 1 292 -20 1836 124 3 54 chrX 44285788 44286106 -118313824 + AluSx SINE Alu 1 303 0 634 336 33 0 chrX 44286107 44286381 -118313549 + L1MC/D LINE L1 5433 5715 -2093 918 273 28 12 chrX 44286535 44286784 -118313146 + MIR SINE MIR 7 259 -3 837 280 108 36 chrX 44286802 44286996 -118312934 - L1MC4a LINE L1 -1870 5938 5759 2036 101 0 44 chrX 44286996 44287312 -118312618 + AluSx SINE Alu 1 302 -10 837 280 108 36 chrX 44287312 44287589 -118312341 - L1MC4a LINE L1 -2049 5759 5433 2225 107 0 10 chrX 44287590 44287898 -118312032 - AluSx SINE Alu -7 305 1 196 344 109 16 chrX 44287929 44288121 -118311809 - L2 LINE L2 -1390 1924 1715 602 269 18 6 chrX 44288186 44288357 -118311573 + MIR SINE MIR 56 228 -34 34 0 0 0 chrX 44288574 44288608 -118311322 + GC_rich Low_complexity Low_complexity 1 34 0 449 340 63 59 chrX 44290152 44290810 -118309120 + L1M4c LINE L1 930 1721 -4592 357 351 40 7 chrX 44291237 44291385 -118308545 - L2 LINE L2 -21 3292 3140 296 267 79 109 chrX 44291449 44291547 -118308383 - L2 LINE L2 0 3313 3220 2110 72 65 0 chrX 44291547 44291825 -118308105 + AluSp SINE Alu 2 297 -16 296 267 79 109 chrX 44291825 44291891 -118308039 - L2 LINE L2 -93 3220 3154 348 291 7 73 chrX 44291991 44292142 -118307788 - L2 LINE L2 -8 3305 3165 834 212 6 0 chrX 44292178 44292343 -118307587 + MIR SINE MIR 91 256 -6 520 283 48 21 chrX 44292880 44293067 -118306863 + MIR SINE MIR 47 238 -24 416 273 38 38 chrX 44293379 44293511 -118306419 + MIR3 SINE MIR 7 138 -70 1250 265 30 56 chrX 44293514 44293822 -118306108 - L2 LINE L2 -5 3308 3014 2440 79 0 0 chrX 44293822 44294126 -118305804 + AluSc SINE Alu 1 304 -5 1250 265 30 56 chrX 44294126 44294278 -118305652 - L2 LINE L2 -299 3014 2860 214 204 330 0 chrX 44294274 44294362 -118305568 + MIR SINE MIR 143 259 -3 * 310 274 142 0 chrX 44295751 44295864 -118304066 + MIR SINE MIR 19 147 -61 549 311 62 0 chrX 44295905 44296098 -118303832 + MIR SINE MIR 33 237 -25 551 227 102 11 chrX 44296142 44296318 -118303612 + MIR SINE MIR 67 258 -4 2342 62 7 0 chrX 44296338 44296629 -118303301 + AluSp SINE Alu 1 293 -20 2159 134 0 0 chrX 44298016 44298352 -118301578 + AluJb SINE Alu 5 340 0 2366 97 0 0 chrX 44298355 44298664 -118301266 + AluSx SINE Alu 1 309 -3 295 235 385 0 chrX 44298815 44299002 -118300928 + L2 LINE L2 2485 2743 -571 622 176 38 94 chrX 44299002 44299161 -118300769 - AluJo SINE Alu -43 269 120 309 294 20 75 chrX 44299176 44299322 -118300608 + L2 LINE L2 3133 3270 -43 185 83 28 0 chrX 44299671 44299707 -118300223 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chrX 44302388 44302416 -118297514 + GC_rich Low_complexity Low_complexity 1 28 0 2346 66 13 0 chrX 44302915 44303216 -118296714 - AluSx SINE Alu -7 305 1 1106 148 21 11 chrX 44305365 44305554 -118294376 - AluJo SINE Alu -121 191 1 1539 241 73 33 chrX 44305605 44305712 -118294218 - L2 LINE L2 0 3313 3212 2301 88 10 0 chrX 44305712 44306006 -118293924 + AluSx SINE Alu 4 300 -12 1539 241 73 33 chrX 44306006 44306470 -118293460 - L2 LINE L2 -101 3212 2726 229 142 0 151 chrX 44306549 44306586 -118293344 + L1MC4 LINE L1 6614 6655 -1387 2223 102 3 0 chrX 44306586 44306881 -118293049 + AluSx SINE Alu 1 296 -16 2127 106 0 7 chrX 44306883 44307176 -118292754 + AluSp SINE Alu 1 291 -22 229 142 0 151 chrX 44307176 44307241 -118292689 + L1MC4 LINE L1 6656 6703 -1339 393 242 0 63 chrX 44307277 44307372 -118292558 + L1MC4 LINE L1 6614 6702 -1340 421 287 26 19 chrX 44307377 44307536 -118292394 - L1MC4 LINE L1 -1339 6983 1922 326 214 0 0 chrX 44307514 44307570 -118292360 - L1MC4 LINE L1 -1333 6989 6934 * 1859 145 0 0 chrX 44307576 44307852 -118292078 - AluJb SINE Alu -36 276 1 2393 233 86 46 chrX 44307852 44308606 -118291324 - L2 LINE L2 -777 2537 1748 2279 74 27 0 chrX 44308606 44308903 -118291027 + AluSx SINE Alu 1 305 -7 2393 233 86 46 chrX 44308903 44308937 -118290993 - L2 LINE L2 -1566 1748 1717 183 129 0 0 chrX 44312953 44312984 -118286946 + (CACCAT)n Simple_repeat Simple_repeat 3 33 0 1768 156 13 7 chrX 44313391 44313698 -118286232 - AluJo SINE Alu -3 309 1 355 244 57 16 chrX 44314824 44314848 -118285082 + MER91B DNA MER1_type 46 68 -122 2029 100 3 55 chrX 44314848 44315159 -118284771 - AluSx SINE Alu -17 295 1 355 244 57 16 chrX 44315159 44315257 -118284673 + MER91B DNA MER1_type 68 173 -17 626 269 24 18 chrX 44315932 44316099 -118283831 - MIR SINE MIR -35 227 60 583 242 113 60 chrX 44317365 44317486 -118282444 - MER46C DNA MER2_type -17 321 208 2369 72 7 0 chrX 44317486 44317790 -118282140 + AluSp SINE Alu 1 306 -7 583 242 113 60 chrX 44317790 44317856 -118282074 - MER46C DNA MER2_type -130 208 147 1864 152 0 52 chrX 44317856 44318001 -118281929 + AluJo SINE Alu 1 152 -160 2420 70 0 10 chrX 44318001 44318314 -118281616 + AluSg SINE Alu 1 310 0 1864 152 0 52 chrX 44318314 44318497 -118281433 + AluJo SINE Alu 152 312 0 583 242 113 60 chrX 44318497 44318610 -118281320 - MER46C DNA MER2_type -191 147 4 855 132 0 31 chrX 44318740 44318869 -118281061 + FLAM_C SINE Alu 1 125 -8 953 111 0 7 chrX 44319104 44319239 -118280691 - AluJo SINE Alu -178 134 1 200 328 0 0 chrX 44319242 44319303 -118280627 + MIR SINE MIR 83 143 -65 452 336 48 60 chrX 44319603 44319840 -118280090 + L2 LINE L2 2898 3136 -177 2363 90 6 0 chrX 44319840 44320151 -118279779 - AluSp SINE Alu 0 313 1 1836 173 20 0 chrX 44320151 44320452 -118279478 - AluJb SINE Alu -5 307 1 2360 79 0 0 chrX 44320457 44320760 -118279170 - AluSg1 SINE Alu -6 303 1 452 336 48 60 chrX 44320760 44320935 -118278995 + L2 LINE L2 3139 3312 -1 258 279 156 16 chrX 44320936 44321058 -118278872 + MIR SINE MIR 18 156 -106 2225 135 0 0 chrX 44326577 44326889 -118273041 + AluSx SINE Alu 1 312 0 184 406 31 0 chrX 44327129 44327225 -118272705 - MIR SINE MIR -96 166 68 1904 119 48 20 chrX 44328327 44328621 -118271309 + AluSg SINE Alu 1 302 -8 724 215 8 0 chrX 44328714 44328844 -118271086 - FLAM_C SINE Alu -2 131 1 981 181 6 0 chrX 44328855 44329026 -118270904 - FRAM SINE Alu -10 166 1 766 223 60 80 chrX 44329058 44329123 -118270807 - L1ME1 LINE L1 -55 6111 6046 1465 164 47 43 chrX 44329123 44329422 -118270508 + AluJo SINE Alu 1 300 -12 766 223 60 80 chrX 44329422 44329720 -118270210 - L1ME1 LINE L1 -120 6046 5755 911 192 112 69 chrX 44329722 44329998 -118269932 - AluJo SINE Alu -4 308 21 1099 186 46 65 chrX 44330000 44330054 -118269876 - L1ME1 LINE L1 -404 5762 5708 1295 197 51 109 chrX 44330054 44330080 -118269850 + MLT1B LTR MaLR 1 27 -363 183 42 0 0 chrX 44330080 44330104 -118269826 + (TA)n Simple_repeat Simple_repeat 2 25 0 1977 112 7 3 chrX 44330104 44330419 -118269511 - AluSq SINE Alu 0 316 1 1295 197 51 109 chrX 44330419 44330802 -118269128 + MLT1B LTR MaLR 25 388 -2 1099 186 46 65 chrX 44330802 44330953 -118268977 - L1ME1 LINE L1 -458 5708 5562 2089 81 10 39 chrX 44330953 44331261 -118268669 + AluSp SINE Alu 1 299 -14 1099 186 46 65 chrX 44331261 44331361 -118268569 - L1ME1 LINE L1 -604 5562 5462 1558 63 0 0 chrX 44333103 44333294 -118266636 - L1PA5 LINE L1 0 6154 5964 323 321 36 0 chrX 44333925 44334037 -118265893 + MIR SINE MIR 2 117 -145 2703 69 3 16 chrX 44334048 44334381 -118265549 + L1PA13 LINE L1 5805 6134 -29 1884 112 68 0 chrX 44334381 44334659 -118265271 - AluSx SINE Alu -15 297 1 2703 69 3 16 chrX 44334659 44334689 -118265241 + L1PA13 LINE L1 6134 6163 0 2269 92 0 19 chrX 44334695 44335035 -118264895 + AluY SINE Alu 1 311 0 2867 156 48 94 chrX 44335200 44335353 -118264577 - L1MB8 LINE L1 -1 6177 6018 1571 175 7 21 chrX 44335353 44335488 -118264442 + AluJb SINE Alu 2 137 -175 2192 112 0 13 chrX 44335488 44335801 -118264129 + AluSc SINE Alu 1 309 0 1571 175 7 21 chrX 44335801 44335950 -118263980 + AluJb SINE Alu 137 282 -30 279 79 0 0 chrX 44335950 44335988 -118263942 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1834 135 14 3 chrX 44335998 44336286 -118263644 - 7SLRNA srpRNA srpRNA -13 307 17 2867 156 48 94 chrX 44336286 44336806 -118263124 - L1MB8 LINE L1 -168 6010 5467 1769 151 0 33 chrX 44336806 44337105 -118262825 - AluSx SINE Alu -23 289 1 1974 141 10 0 chrX 44337114 44337413 -118262517 - AluSx SINE Alu -10 302 1 2867 156 48 94 chrX 44337413 44337529 -118262401 - L1MB8 LINE L1 -719 5459 5339 1969 147 79 108 chrX 44337529 44337823 -118262107 + MLT1D LTR MaLR 3 304 -201 1893 83 8 0 chrX 44337823 44338075 -118261855 + AluSq SINE Alu 52 305 -8 2379 53 40 0 chrX 44338077 44338376 -118261554 + AluY SINE Alu 1 311 0 1969 147 79 108 chrX 44338376 44338596 -118261334 + MLT1D LTR MaLR 305 505 0 2867 156 48 94 chrX 44338596 44338640 -118261290 - L1MB8 LINE L1 -838 5340 5360 317 207 17 0 chrX 44338646 44338704 -118261226 + L1MC4 LINE L1 6640 6698 -1344 2035 113 3 3 chrX 44338704 44338987 -118260943 - AluSx SINE Alu -29 283 1 2074 83 4 0 chrX 44339018 44339283 -118260647 - AluY SINE Alu -45 266 1 2253 100 0 0 chrX 44339283 44339573 -118260357 - AluSg SINE Alu -20 290 1 690 239 46 10 chrX 44339573 44339861 -118260069 - L1M4 LINE L1 -1970 4412 1421 361 235 25 12 chrX 44339864 44339943 -118259987 - LTR42 LTR ERVL 0 495 416 879 235 45 10 chrX 44339943 44340300 -118259630 + LTR2 LTR ERV1 1 401 -48 2574 111 5 13 chrX 44340303 44340691 -118259239 + Harlequin LTR ERV1 1 385 -6511 20117 164 15 2 chrX 44340759 44344145 -118255785 + Harlequin LTR ERV1 336 3740 -4073 1317 148 0 0 chrX 44344136 44344332 -118255598 - Harlequin LTR ERV1 -3061 4752 4557 * 1033 168 0 0 chrX 44344347 44344508 -118255422 - Harlequin LTR ERV1 -5428 2385 2225 24476 158 6 25 chrX 44344529 44344644 -118255286 + Harlequin LTR ERV1 3736 3852 -3961 2525 69 0 3 chrX 44344644 44344947 -118254983 + AluY SINE Alu 1 302 -9 24476 158 6 25 chrX 44344947 44348985 -118250945 + Harlequin LTR ERV1 3852 7811 -2 1247 235 121 10 chrX 44348985 44349389 -118250541 + LTR2 LTR ERV1 1 449 0 570 202 18 0 chrX 44349389 44349498 -118250432 - LTR42 LTR ERVL -76 419 309 408 216 0 0 chrX 44349502 44349576 -118250354 - Harlequin LTR ERV1 -1322 5574 5501 2019 135 7 0 chrX 44349587 44349890 -118250040 - LTR42 LTR ERVL -190 305 1 324 184 40 13 chrX 44349891 44349967 -118249963 - L1M4 LINE L1 -4859 1996 1919 2316 111 3 0 chrX 44349975 44350273 -118249657 + AluSq SINE Alu 8 306 -7 2341 102 3 13 chrX 44350273 44350587 -118249343 + AluSx SINE Alu 1 311 -1 1200 144 0 0 chrX 44350596 44350776 -118249154 + AluSg/x SINE Alu 121 300 -10 1764 159 23 23 chrX 44350788 44351089 -118248841 + AluJo SINE Alu 1 301 -11 263 210 0 16 chrX 44351094 44351156 -118248774 - L1M4 LINE L1 -5034 1925 1865 1385 115 206 0 chrX 44351160 44351412 -118248518 + MER83B LTR ERV1 6 309 -69 2011 101 94 11 chrX 44351412 44351699 -118248231 - AluSp SINE Alu 0 313 3 31 0 0 0 chrX 44351701 44351732 -118248198 + AT_rich Low_complexity Low_complexity 1 31 0 669 89 0 0 chrX 44351732 44351822 -118248108 - AluS SINE Alu -220 92 3 2187 120 0 22 chrX 44351824 44352141 -118247789 - AluSx SINE Alu -2 310 1 2481 74 0 16 chrX 44352149 44352458 -118247472 - AluY SINE Alu -1 310 7 546 141 0 0 chrX 44352464 44352549 -118247381 + MER83B LTR ERV1 294 378 0 432 0 0 0 chrX 44352569 44352617 -118247313 + (TATG)n Simple_repeat Simple_repeat 1 48 0 786 233 6 84 chrX 44352644 44352910 -118247020 - L1M4 LINE L1 -4990 1865 1630 2472 64 0 10 chrX 44352910 44353207 -118246723 - AluY SINE Alu -16 295 2 786 233 6 84 chrX 44353207 44353283 -118246647 - L1M4 LINE L1 -5225 1630 1550 2316 103 0 31 chrX 44353296 44353330 -118246600 - AluSx SINE Alu -2 310 276 261 0 0 0 chrX 44353330 44353359 -118246571 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2316 103 0 31 chrX 44353359 44353644 -118246286 - AluSx SINE Alu -36 276 1 2208 108 7 10 chrX 44353646 44353951 -118245979 - AluSq SINE Alu -9 304 1 629 213 47 7 chrX 44353952 44354102 -118245828 - L1M4 LINE L1 -6693 166 11 302 322 81 35 chrX 44354109 44354283 -118245647 - L1ME3A LINE L1 0 6170 5989 1660 167 80 53 chrX 44354425 44354604 -118245326 + MSTB1 LTR MaLR 3 176 -252 2400 82 0 3 chrX 44354604 44354897 -118245033 + AluSc SINE Alu 1 292 -17 721 82 18 0 chrX 44354902 44355012 -118244918 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 1660 167 80 53 chrX 44355012 44355233 -118244697 + MSTB1 LTR MaLR 179 418 -10 743 165 0 8 chrX 44355251 44355378 -118244552 + FLAM_C SINE Alu 2 127 -6 21 0 0 0 chrX 44355379 44355400 -118244530 + AT_rich Low_complexity Low_complexity 1 21 0 1033 204 108 9 chrX 44355416 44355647 -118244283 + AluJo SINE Alu 56 309 -3 2348 110 3 0 chrX 44355653 44355963 -118243967 + AluSp SINE Alu 1 311 -2 2042 134 3 10 chrX 44355966 44356279 -118243651 + AluSx SINE Alu 1 311 -1 2353 81 0 3 chrX 44356289 44356621 -118243309 + AluSx SINE Alu 2 332 0 1137 154 23 64 chrX 44356684 44356904 -118243026 - AluJo SINE Alu -67 245 35 2390 101 7 0 chrX 44356910 44357217 -118242713 - AluSq SINE Alu -4 309 1 2405 82 0 25 chrX 44357228 44357257 -118242673 - AluSq SINE Alu -3 310 282 372 22 0 0 chrX 44357257 44357302 -118242628 + (TG)n Simple_repeat Simple_repeat 1 45 0 2405 82 0 25 chrX 44357302 44357590 -118242340 - AluSq SINE Alu -31 282 1 331 328 41 32 chrX 44357590 44357740 -118242190 - L1M4 LINE L1 -780 5366 5219 1472 122 0 28 chrX 44357740 44357898 -118242032 - AluJb SINE Alu -23 289 128 209 30 61 0 chrX 44357898 44357931 -118241999 + T-rich Low_complexity Low_complexity 2 36 0 2290 100 0 0 chrX 44357931 44358212 -118241718 - AluSg SINE Alu -29 281 1 1472 122 0 28 chrX 44358212 44358266 -118241664 - AluJb SINE Alu -182 130 82 331 328 41 32 chrX 44358266 44358307 -118241623 - L1M4 LINE L1 -927 5219 5158 637 214 0 0 chrX 44358790 44358916 -118241014 - FLAM_A SINE Alu -7 135 10 2259 92 7 0 chrX 44358957 44359240 -118240690 + AluSx SINE Alu 9 293 -19 975 255 0 4 chrX 44359500 44359735 -118240195 + L1MD3 LINE L1 7426 7659 -336 2273 115 7 0 chrX 44359741 44360036 -118239894 + AluSx SINE Alu 1 297 -15 1549 78 11 0 chrX 44360036 44360227 -118239703 + AluSg SINE Alu 1 193 -117 2498 79 0 0 chrX 44360228 44360531 -118239399 - AluY SINE Alu -8 303 1 871 108 0 16 chrX 44360532 44360661 -118239269 + AluSg SINE Alu 183 309 -1 2218 96 0 10 chrX 44360681 44360974 -118238956 + AluY SINE Alu 1 290 -21 554 133 0 0 chrX 44360988 44361071 -118238859 - AluSg/x SINE Alu -17 292 210 818 172 0 0 chrX 44361071 44361199 -118238731 - FRAM SINE Alu -44 132 5 2053 153 3 0 chrX 44361415 44361749 -118238181 - AluSx SINE Alu 0 312 1 2014 140 0 0 chrX 44361779 44362058 -118237872 + AluSx SINE Alu 9 287 -25 278 67 22 0 chrX 44362058 44362103 -118237827 + (TA)n Simple_repeat Simple_repeat 2 47 0 914 180 6 17 chrX 44362346 44362524 -118237406 - FRAM SINE Alu 0 176 1 2215 129 0 16 chrX 44362555 44362872 -118237058 - AluSx SINE Alu 0 312 1 1592 177 0 4 chrX 44363034 44363299 -118236631 - AluJb SINE Alu -47 265 2 2429 109 0 0 chrX 44363374 44363686 -118236244 - AluSx SINE Alu 0 312 1 2300 88 17 0 chrX 44363765 44364059 -118235871 - AluSx SINE Alu 0 312 14 2393 101 3 0 chrX 44364075 44364381 -118235549 - AluSx SINE Alu -1 311 5 233 75 25 0 chrX 44364383 44364423 -118235507 - Alu SINE Alu -166 137 97 1070 155 0 6 chrX 44364493 44364661 -118235269 - FRAM SINE Alu -17 159 1 207 189 0 0 chrX 44364701 44364738 -118235192 + L2 LINE L2 3270 3306 -7 2457 84 0 3 chrX 44364817 44365127 -118234803 + AluSc SINE Alu 1 309 0 186 244 85 0 chrX 44365960 44366042 -118233888 - L2 LINE L2 -1017 2297 2209 1333 200 99 9 chrX 44366856 44367228 -118232702 - L2 LINE L2 -332 2981 2574 2280 122 0 3 chrX 44367600 44367912 -118232018 - AluSx SINE Alu -1 311 1 788 239 26 77 chrX 44367987 44368093 -118231837 + L2 LINE L2 2358 2468 -846 2339 103 0 0 chrX 44368093 44368395 -118231535 + AluSx SINE Alu 1 302 -10 788 239 26 77 chrX 44368395 44368598 -118231332 + L2 LINE L2 2468 2651 -663 996 268 156 22 chrX 44368603 44369076 -118230854 + L2 LINE L2 2777 3312 -1 430 213 32 0 chrX 44369556 44369650 -118230280 + MIR SINE MIR 108 204 -58 838 153 16 0 chrX 44369650 44369774 -118230156 + FLAM_C SINE Alu 1 126 -17 2471 77 6 19 chrX 44369800 44370113 -118229817 + AluY SINE Alu 1 309 -2 709 244 85 29 chrX 44370189 44370289 -118229641 + MER46C DNA MER2_type 1 94 -244 2347 123 0 0 chrX 44370289 44370599 -118229331 - AluSx SINE Alu -2 310 1 709 244 85 29 chrX 44370599 44370744 -118229186 + MER46C DNA MER2_type 94 260 -78 314 138 0 17 chrX 44370744 44370802 -118229128 - MER116 DNA Mariner 0 80 24 2218 109 0 0 chrX 44370835 44371143 -118228787 + AluSq SINE Alu 1 308 0 2319 111 7 0 chrX 44373520 44373826 -118226104 - AluSg SINE Alu -2 308 1 239 103 26 0 chrX 44373827 44373866 -118226064 - L1MD3 LINE L1 -1059 6936 6897 1764 169 0 24 chrX 44373866 44374033 -118225897 - AluJo SINE Alu -29 283 124 2312 106 3 0 chrX 44374033 44374334 -118225596 + AluSq SINE Alu 1 302 -11 1764 169 0 24 chrX 44374334 44374456 -118225474 - AluJo SINE Alu -188 124 1 2027 135 0 30 chrX 44375244 44375548 -118224382 + AluSx SINE Alu 5 299 -13 813 150 0 46 chrX 44375671 44375824 -118224106 - AluJo SINE Alu -19 283 138 21 0 0 0 chrX 44376805 44376826 -118223104 + AT_rich Low_complexity Low_complexity 1 21 0 889 143 7 36 chrX 44376826 44376966 -118222964 - AluJo SINE Alu -176 136 1 2516 91 0 0 chrX 44376973 44377281 -118222649 - AluSg SINE Alu -2 308 1 319 301 0 0 chrX 44377457 44377540 -118222390 - L2 LINE L2 -4 3309 3227 1145 262 97 4 chrX 44377545 44378026 -118221904 - L2 LINE L2 -22 3291 2752 1211 123 32 21 chrX 44378215 44378402 -118221528 - AluJb SINE Alu -9 303 115 2389 103 0 0 chrX 44378402 44378702 -118221228 + AluSx SINE Alu 1 300 -12 745 166 58 0 chrX 44378711 44378850 -118221080 + MLT1A1 LTR MaLR 55 201 -164 2707 53 0 0 chrX 44378921 44379224 -118220706 + AluY SINE Alu 1 303 -8 1263 183 101 8 chrX 44379231 44379488 -118220442 - MSTD LTR MaLR -2 394 114 646 173 60 0 chrX 44379513 44379646 -118220284 - MLT1B LTR MaLR -46 344 204 234 0 0 0 chrX 44379655 44379681 -118220249 + (TC)n Simple_repeat Simple_repeat 2 27 0 248 208 0 0 chrX 44379691 44379739 -118220191 - MSTD LTR MaLR -334 94 47 2096 125 0 0 chrX 44379741 44380020 -118219910 - AluSx SINE Alu -7 305 27 1818 178 26 0 chrX 44380101 44380404 -118219526 - AluJo SINE Alu -1 311 1 2334 93 23 0 chrX 44380409 44380711 -118219219 - AluSx SINE Alu -3 309 1 663 234 31 92 chrX 44380722 44380786 -118219144 - MIR SINE MIR -10 252 186 2040 96 0 86 chrX 44380786 44381130 -118218800 - AluSx SINE Alu 0 317 1 663 234 31 92 chrX 44381130 44381324 -118218606 - MIR SINE MIR -76 186 8 431 313 89 16 chrX 44381379 44381625 -118218305 - L1ME3 LINE L1 -335 5827 5564 724 243 26 31 chrX 44382116 44382316 -118217614 - MIR SINE MIR 0 262 61 1608 193 7 26 chrX 44382375 44382681 -118217249 - AluJo SINE Alu -12 300 1 24 0 0 0 chrX 44382830 44382854 -118217076 + AT_rich Low_complexity Low_complexity 1 24 0 1556 176 0 24 chrX 44382854 44383109 -118216821 - AluJb SINE Alu -33 279 31 192 111 0 0 chrX 44383249 44383285 -118216645 + (TATG)n Simple_repeat Simple_repeat 2 37 0 1977 144 7 3 chrX 44383285 44383569 -118216361 - AluSx SINE Alu -27 285 1 1270 124 0 6 chrX 44383569 44383746 -118216184 - AluSg/x SINE Alu -3 306 131 1883 154 20 10 chrX 44383747 44384046 -118215884 - AluSx SINE Alu -10 302 1 2435 74 0 0 chrX 44384053 44384383 -118215547 - AluSx SINE Alu 0 330 1 1872 182 0 10 chrX 44384660 44384967 -118214963 - AluJo SINE Alu -8 304 1 271 161 74 37 chrX 44385272 44385318 -118214612 - MER20B DNA MER1_type -6 777 725 2569 66 3 0 chrX 44385318 44385619 -118214311 + AluSp SINE Alu 1 302 -11 271 161 74 37 chrX 44385619 44385653 -118214277 - MER20B DNA MER1_type -58 725 694 235 347 71 0 chrX 44385768 44385866 -118214064 + L2 LINE L2 3166 3270 -2 326 317 150 6 chrX 44386114 44386281 -118213649 + MIR SINE MIR 15 205 -57 2680 42 0 6 chrX 44387936 44388247 -118211683 + AluY SINE Alu 1 309 -2 2678 61 0 0 chrX 44388661 44388972 -118210958 - AluY SINE Alu 0 311 1 2292 99 3 0 chrX 44389137 44389430 -118210500 - AluSx SINE Alu -18 294 1 1620 193 7 0 chrX 44389665 44389945 -118209985 - AluJo SINE Alu -30 282 1 2118 136 0 3 chrX 44389954 44390256 -118209674 - AluSx SINE Alu -10 302 2 1264 172 31 4 chrX 44390283 44390510 -118209420 + AluJo SINE Alu 64 296 -16 2225 113 0 3 chrX 44390512 44390822 -118209108 + AluSq SINE Alu 1 309 -4 2215 96 3 3 chrX 44390842 44391144 -118208786 + AluSx SINE Alu 1 302 -10 227 174 0 0 chrX 44391166 44391212 -118208718 + Alu SINE Alu 254 299 -4 2037 102 49 0 chrX 44391433 44391717 -118208213 + AluSc SINE Alu 1 298 -11 898 200 6 0 chrX 44391728 44391893 -118208037 + FRAM SINE Alu 1 166 -10 1699 179 13 3 chrX 44391940 44392242 -118207688 + AluJo SINE Alu 1 305 -7 2075 100 10 26 chrX 44392402 44392712 -118207218 + AluSg SINE Alu 1 305 -5 2396 65 0 0 chrX 44392712 44393005 -118206925 + AluY SINE Alu 1 293 -18 1068 207 30 0 chrX 44393044 44393242 -118206688 - AluJo SINE Alu -108 204 1 1402 96 5 0 chrX 44393384 44393571 -118206359 + AluSp SINE Alu 1 188 -125 604 141 0 0 chrX 44393571 44393663 -118206267 - AluS SINE Alu -220 92 1 347 291 90 8 chrX 44393703 44393837 -118206093 - L2 LINE L2 0 3313 3169 270 45 68 0 chrX 44393949 44393993 -118205937 + AluJb SINE Alu 87 133 -169 2008 137 7 0 chrX 44393993 44394285 -118205645 - AluSx SINE Alu -18 294 1 1591 112 0 0 chrX 44394410 44394624 -118205306 + AluSg/x SINE Alu 81 294 -18 1744 153 10 35 chrX 44394631 44394945 -118204985 + AluJo SINE Alu 1 306 -6 1101 204 238 0 chrX 44394945 44395180 -118204750 + AluSp SINE Alu 1 291 -12 1825 78 108 0 chrX 44395263 44395532 -118204398 + AluSg SINE Alu 1 298 -12 1389 253 78 5 chrX 44395592 44396030 -118203900 + MER119 DNA MER1_type 3 472 -111 504 174 60 40 chrX 44396111 44396260 -118203670 - L1ME1 LINE L1 -70 6096 5945 2265 64 34 0 chrX 44396328 44396624 -118203306 - AluY SINE Alu -4 307 2 2866 9 0 0 chrX 44396688 44397006 -118202924 - AluYb8 SINE Alu 0 318 1 2251 104 0 0 chrX 44397008 44397305 -118202625 - AluSx SINE Alu -5 307 11 2093 71 46 11 chrX 44397351 44397634 -118202296 + AluY SINE Alu 1 293 -18 2029 119 7 7 chrX 44397645 44397930 -118202000 + AluSq SINE Alu 10 294 -19 1316 172 18 85 chrX 44397979 44398111 -118201819 - L1MB2 LINE L1 0 6171 6032 1934 117 14 3 chrX 44398111 44398401 -118201529 + AluSx SINE Alu 1 293 -19 1316 172 18 85 chrX 44398401 44398657 -118201273 - L1MB2 LINE L1 -139 6032 5814 1188 191 38 0 chrX 44398658 44398868 -118201062 - AluSg/x SINE Alu 0 312 95 * 1395 138 0 0 chrX 44398867 44399070 -118200860 + AluSg/x SINE Alu 88 290 -22 681 161 55 81 chrX 44399070 44399173 -118200757 - L1M4 LINE L1 -5370 1172 1068 2219 112 0 0 chrX 44399173 44399469 -118200461 - AluSx SINE Alu -16 296 1 681 161 55 81 chrX 44399469 44399601 -118200329 - L1M4 LINE L1 -5474 1068 943 676 194 15 8 chrX 44399601 44399735 -118200195 - FRAM SINE Alu -4 172 38 1985 229 21 19 chrX 44399756 44400037 -118199893 - L1M4 LINE L1 -5589 953 669 2166 120 0 9 chrX 44400037 44400353 -118199577 - AluSq SINE Alu 0 313 1 1985 229 21 19 chrX 44400353 44400555 -118199375 - L1M4 LINE L1 -5873 669 469 785 167 0 129 chrX 44400555 44400741 -118199189 - AluJb SINE Alu -12 300 139 529 257 82 6 chrX 44400741 44400924 -118199006 + L2 LINE L2 1993 2189 -1125 1069 173 11 0 chrX 44400924 44401101 -118198829 - AluSg/x SINE Alu 0 310 129 2126 107 3 3 chrX 44401101 44401399 -118198531 - AluSq SINE Alu -15 298 1 1069 173 11 0 chrX 44401399 44401412 -118198518 - AluSg/x SINE Alu -181 129 118 189 94 0 0 chrX 44401412 44401444 -118198486 + (A)n Simple_repeat Simple_repeat 1 32 0 437 113 0 0 chrX 44401489 44401551 -118198379 + AluJ/FLAM SINE Alu 1 62 -250 583 171 7 59 chrX 44401565 44401584 -118198346 + LTR23 LTR ERV1 3 21 -416 2080 137 3 0 chrX 44401584 44401890 -118198040 + AluSx SINE Alu 3 309 -3 583 171 7 59 chrX 44401890 44402022 -118197908 + LTR23 LTR ERV1 21 146 -291 2287 87 0 0 chrX 44402022 44402311 -118197619 + AluSq SINE Alu 1 289 -24 249 122 0 0 chrX 44402311 44402352 -118197578 + MER41A LTR ERV1 514 554 0 1779 162 0 13 chrX 44402596 44402905 -118197025 - AluJb SINE Alu -7 305 1 400 202 0 0 chrX 44402905 44403004 -118196926 - L1MEc LINE L1 -5557 839 741 2070 235 51 43 chrX 44403017 44403563 -118196367 - L1MEc LINE L1 -5702 694 141 2075 108 10 10 chrX 44403563 44403860 -118196070 + AluSx SINE Alu 1 297 -15 2070 235 51 43 chrX 44403860 44403959 -118195971 - L1MEc LINE L1 -6255 141 44 758 132 66 8 chrX 44403970 44404091 -118195839 - FLAM_C SINE Alu -15 128 1 394 369 172 10 chrX 44404107 44404445 -118195485 - L2 LINE L2 -896 2418 2136 2285 105 0 13 chrX 44404445 44404579 -118195351 + AluSg SINE Alu 1 135 -175 2510 50 0 0 chrX 44404579 44404876 -118195054 + AluSg SINE Alu 1 297 -13 2285 105 0 13 chrX 44404876 44405054 -118194876 + AluSg SINE Alu 135 309 -1 394 369 172 10 chrX 44405054 44405319 -118194611 - L2 LINE L2 -1178 2136 1717 977 108 29 0 chrX 44405584 44405723 -118194207 - U4 snRNA snRNA -1 144 2 1021 122 10 61 chrX 44405726 44405746 -118194184 - AluSg/x SINE Alu -9 303 284 2027 112 13 7 chrX 44405746 44406051 -118193879 - AluSq SINE Alu -6 307 1 1021 122 10 61 chrX 44406051 44406207 -118193723 - AluSg/x SINE Alu -28 284 135 2298 84 0 3 chrX 44406207 44406504 -118193426 - AluSg SINE Alu -14 296 1 1021 122 10 61 chrX 44406504 44406522 -118193408 - AluSg/x SINE Alu -177 135 118 2210 73 3 38 chrX 44406547 44406863 -118193067 + AluSp SINE Alu 1 305 -8 2342 90 0 0 chrX 44407008 44407320 -118192610 + AluSx SINE Alu 1 312 0 2179 122 0 0 chrX 44409207 44409511 -118190419 - AluSx SINE Alu -8 304 1 188 239 0 0 chrX 44410280 44410326 -118189604 - L2 LINE L2 -5 3308 3263 949 186 0 6 chrX 44410327 44410499 -118189431 - MIR SINE MIR -20 242 72 403 318 9 14 chrX 44410678 44410835 -118189095 + MIR3 SINE MIR 17 171 -49 240 312 54 11 chrX 44413203 44413296 -118186634 - L2 LINE L2 -182 3090 2994 1637 173 18 3 chrX 44416751 44417034 -118182896 + AluJo SINE Alu 1 287 -25 1539 160 26 67 chrX 44417034 44417153 -118182777 + AluJb SINE Alu 2 124 -188 2210 73 13 17 chrX 44417153 44417455 -118182475 - AluSg SINE Alu -9 301 1 1539 160 26 67 chrX 44417455 44417648 -118182282 + AluJb SINE Alu 124 301 -11 2121 88 35 0 chrX 44418093 44418376 -118181554 + AluSg SINE Alu 1 293 -17 201 292 0 15 chrX 44419356 44419421 -118180509 + GA-rich Low_complexity Low_complexity 5 68 0 200 196 109 0 chrX 44421177 44421223 -118178707 + L2 LINE L2 3187 3237 -76 953 228 91 9 chrX 44421257 44421489 -118178441 + MIR SINE MIR 2 252 -10 213 143 0 0 chrX 44421527 44421562 -118178368 - MIR SINE MIR -108 154 120 2327 81 0 19 chrX 44421628 44421938 -118177992 - AluSq SINE Alu -9 304 1 419 281 127 20 chrX 44424235 44424488 -118175442 - MER46C DNA MER2_type -36 302 23 2109 77 46 11 chrX 44424513 44424662 -118175268 - AluSp SINE Alu -18 295 153 2521 56 0 0 chrX 44424662 44424966 -118174964 - AluY SINE Alu -7 304 1 2109 77 46 11 chrX 44424966 44425101 -118174829 - AluSp SINE Alu -160 153 1 380 243 99 0 chrX 44426003 44426114 -118173816 - MIR SINE MIR -57 205 84 194 314 179 0 chrX 44426115 44426255 -118173675 + L2 LINE L2 2807 2971 -343 300 330 26 9 chrX 44426370 44426485 -118173445 + L2 LINE L2 3197 3313 0 2191 115 3 10 chrX 44427423 44427736 -118172194 - AluSx SINE Alu -1 311 1 849 203 0 25 chrX 44429056 44429219 -118170711 + AluJo SINE Alu 1 159 -153 300 227 0 80 chrX 44429694 44429769 -118170161 - MIR SINE MIR -55 153 85 333 68 0 0 chrX 44429994 44430038 -118169892 + (CCA)n Simple_repeat Simple_repeat 2 45 0 183 225 0 0 chrX 44430486 44430526 -118169404 + MIR SINE MIR 110 145 -63 952 152 88 34 chrX 44430841 44431045 -118168885 + MIR SINE MIR 46 260 -2 2468 69 0 0 chrX 44431229 44431534 -118168396 - AluSg1 SINE Alu -4 305 1 21 0 0 0 chrX 44434203 44434224 -118165706 + GC_rich Low_complexity Low_complexity 1 21 0 2132 115 0 3 chrX 44435449 44435744 -118164186 + AluSx SINE Alu 1 294 -18 2389 91 0 0 chrX 44435819 44436126 -118163804 + AluSx SINE Alu 6 312 0 1029 204 84 14 chrX 44436134 44436418 -118163512 - L1MB8 LINE L1 -81 6097 5794 2364 84 3 0 chrX 44436881 44437192 -118162738 - AluSp SINE Alu -1 312 1 570 186 0 172 chrX 44437546 44437612 -118162318 - MLT1D LTR MaLR 0 505 429 2315 91 3 0 chrX 44437612 44437919 -118162011 + AluSc SINE Alu 1 308 -1 570 186 0 172 chrX 44437919 44437951 -118161979 - MLT1D LTR MaLR -76 429 393 1657 123 37 60 chrX 44437951 44438216 -118161714 + AluSx SINE Alu 12 271 -41 198 0 0 0 chrX 44438216 44438238 -118161692 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1657 123 37 60 chrX 44438238 44438272 -118161658 + AluSx SINE Alu 271 304 -8 570 186 0 172 chrX 44438272 44438373 -118161557 - MLT1D LTR MaLR -112 393 340 1447 124 76 55 chrX 44438373 44438663 -118161267 + MER1B DNA MER1_type 1 296 -43 2068 114 0 0 chrX 44438665 44438946 -118160984 + AluSx SINE Alu 1 281 -31 956 102 0 0 chrX 44438828 44438947 -118160983 + AluSg/x SINE Alu 162 307 0 244 0 0 0 chrX 44438947 44438974 -118160956 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 810 186 25 69 chrX 44438997 44439229 -118160701 - MLT1D LTR MaLR -198 269 47 1191 147 0 0 chrX 44439229 44439399 -118160531 + AluJb SINE Alu 132 301 -11 1989 139 14 0 chrX 44439408 44439697 -118160233 + AluSx SINE Alu 1 291 -21 2335 93 0 13 chrX 44439704 44440015 -118159915 + AluY SINE Alu 1 307 -4 604 118 0 0 chrX 44440477 44440570 -118159360 + AluSg/x SINE Alu 215 307 -3 2287 112 3 10 chrX 44440639 44440953 -118158977 + AluSx SINE Alu 1 312 0 2544 53 7 3 chrX 44440967 44441266 -118158664 + AluY SINE Alu 3 302 -9 1725 151 3 69 chrX 44441506 44441669 -118158261 - AluJo SINE Alu -28 284 149 2510 77 0 16 chrX 44441669 44441982 -118157948 - AluSc SINE Alu -1 308 1 1725 151 3 69 chrX 44441982 44442122 -118157808 - AluJo SINE Alu -163 149 1 2391 89 0 7 chrX 44442162 44442464 -118157466 - AluSx SINE Alu -12 300 1 2174 87 7 20 chrX 44442465 44442765 -118157165 - AluSx SINE Alu -16 296 1 2518 68 3 3 chrX 44442855 44443163 -118156767 - AluSx SINE Alu -4 308 1 217 271 34 0 chrX 44443440 44443499 -118156431 + L2 LINE L2 3212 3272 0 433 222 69 35 chrX 44443504 44443648 -118156282 - MIR SINE MIR -6 256 108 185 128 0 26 chrX 44444391 44444430 -118155500 + (GGA)n Simple_repeat Simple_repeat 1 38 0 2449 85 0 0 chrX 44446652 44446946 -118152984 + AluSc SINE Alu 1 294 -15 2430 97 0 0 chrX 44450167 44450466 -118149464 - AluSg SINE Alu -11 299 1 2132 128 23 10 chrX 44450557 44450863 -118149067 - AluSx SINE Alu -2 310 1 2183 131 3 0 chrX 44451056 44451362 -118148568 - AluSg SINE Alu -3 307 1 2392 88 3 19 chrX 44451382 44451700 -118148230 - AluSq SINE Alu 0 313 1 2027 146 3 3 chrX 44451702 44451997 -118147933 - AluJb SINE Alu -17 295 1 2636 52 0 3 chrX 44452179 44452484 -118147446 + AluY SINE Alu 1 304 -7 2230 101 0 42 chrX 44452522 44452866 -118147064 - AluSx SINE Alu 0 312 1 461 125 0 0 chrX 44454687 44454759 -118145171 - Alu SINE Alu -6 305 234 1371 117 0 29 chrX 44454793 44454930 -118145000 + AluSx SINE Alu 1 132 -180 2110 110 31 7 chrX 44454930 44455222 -118144708 + AluSg SINE Alu 1 299 -11 1371 117 0 29 chrX 44455222 44455289 -118144641 + AluSx SINE Alu 132 199 -113 492 103 0 0 chrX 44455290 44455358 -118144572 + AluSc SINE Alu 66 133 -176 2121 113 0 47 chrX 44455358 44455676 -118144254 + AluSx SINE Alu 1 303 -9 964 314 60 22 chrX 44455680 44456133 -118143797 - L2 LINE L2 -18 3295 2826 206 182 0 23 chrX 44456628 44456672 -118143258 + (TAA)n Simple_repeat Simple_repeat 3 45 0 606 266 21 84 chrX 44456676 44456787 -118143143 - MIR SINE MIR 0 262 171 2362 65 25 0 chrX 44456787 44457092 -118142838 - AluSp SINE Alu 0 312 1 606 266 21 84 chrX 44457092 44457216 -118142714 - MIR SINE MIR -91 171 41 203 200 127 0 chrX 44459851 44459906 -118140024 + L2 LINE L2 3137 3198 -74 2120 129 17 3 chrX 44459935 44460237 -118139693 - AluSx SINE Alu -6 306 1 2175 127 17 0 chrX 44460364 44460664 -118139266 - AluSx SINE Alu -7 305 1 2109 108 0 54 chrX 44460674 44460881 -118139049 - AluSx SINE Alu 0 330 113 2228 110 3 0 chrX 44460881 44461173 -118138757 - AluSg SINE Alu -17 293 1 2359 103 0 3 chrX 44461173 44461473 -118138457 - AluSx SINE Alu -13 299 1 2109 108 0 54 chrX 44461473 44461611 -118138319 - AluSx SINE Alu -215 115 1 2110 112 7 43 chrX 44461651 44461954 -118137976 - AluSx SINE Alu -20 292 1 2381 103 0 3 chrX 44461972 44462284 -118137646 - AluY SINE Alu 0 311 1 1099 173 25 25 chrX 44462304 44462441 -118137489 - L1MD3 LINE L1 -16 7979 7840 2483 78 16 0 chrX 44462441 44462747 -118137183 + AluY SINE Alu 1 311 0 1099 173 25 25 chrX 44462747 44462846 -118137084 - L1MD3 LINE L1 -154 7841 7743 1658 260 80 30 chrX 44462854 44463393 -118136537 - MLT1E LTR MaLR -13 580 15 2592 136 29 100 chrX 44463456 44463536 -118136394 + L1MD3 LINE L1 6668 6752 -1243 2290 118 0 0 chrX 44463536 44463841 -118136089 - AluSq SINE Alu -8 305 1 2592 136 29 100 chrX 44463841 44463996 -118135934 + L1MD3 LINE L1 6752 6916 -1079 2555 80 0 3 chrX 44463996 44464308 -118135622 + AluSq SINE Alu 1 311 -2 2592 136 29 100 chrX 44464308 44464371 -118135559 + L1MD3 LINE L1 6916 6982 -1013 2368 98 0 0 chrX 44464371 44464668 -118135262 + AluSc SINE Alu 1 297 -12 2592 136 29 100 chrX 44464668 44464805 -118135125 + L1MD3 LINE L1 6982 7049 -946 876 207 0 0 chrX 44464805 44464969 -118134961 + FAM SINE Alu 1 164 -11 2592 136 29 100 chrX 44464969 44465162 -118134768 + L1MD3 LINE L1 7049 7254 -741 646 175 67 0 chrX 44465170 44465290 -118134640 + AluJb SINE Alu 2 129 -183 2043 103 92 0 chrX 44465292 44465573 -118134357 - AluSx SINE Alu -5 307 1 23 0 0 0 chrX 44465573 44465596 -118134334 + AT_rich Low_complexity Low_complexity 1 23 0 2346 64 3 20 chrX 44465601 44465899 -118134031 + AluY SINE Alu 1 293 -18 502 162 27 36 chrX 44465910 44466021 -118133909 + MLT1F1 LTR MaLR 13 122 -445 2303 123 0 0 chrX 44466021 44466329 -118133601 + AluSx SINE Alu 1 308 -4 1595 82 5 0 chrX 44466330 44466525 -118133405 + AluSc SINE Alu 1 196 -113 263 32 0 0 chrX 44466525 44466556 -118133374 - AluY SINE Alu -215 93 63 1315 128 0 39 chrX 44466556 44466760 -118133170 - AluSx SINE Alu -115 197 2 444 37 0 0 chrX 44466766 44466820 -118133110 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2471 87 7 0 chrX 44466822 44467132 -118132798 - AluSx SINE Alu 0 312 1 2332 96 3 3 chrX 44467293 44467594 -118132336 - AluSx SINE Alu -11 301 1 386 259 0 9 chrX 44467598 44467706 -118132224 + L1MEc LINE L1 45 151 -6245 985 178 18 0 chrX 44467706 44467875 -118132055 + AluJb SINE Alu 133 304 -8 480 216 10 0 chrX 44467875 44467972 -118131958 + L1MEc LINE L1 137 234 -6162 1953 113 31 9 chrX 44467986 44468312 -118131618 + L1MB4 LINE L1 5848 6180 0 1976 206 130 51 chrX 44468312 44468719 -118131211 + L1M4 LINE L1 3335 3708 -2438 2367 113 3 0 chrX 44468719 44469030 -118130900 - AluSx SINE Alu 0 312 1 1976 206 130 51 chrX 44469030 44469186 -118130744 + L1M4 LINE L1 3708 3850 -2296 2357 95 0 16 chrX 44469186 44469503 -118130427 + AluSq SINE Alu 1 312 -1 1976 206 130 51 chrX 44469503 44469622 -118130308 + L1M4 LINE L1 3850 4072 -2074 2342 79 30 13 chrX 44469648 44469951 -118129979 - AluSq SINE Alu -5 308 1 1617 140 115 11 chrX 44469952 44470230 -118129700 - AluSg SINE Alu -3 307 1 1236 187 0 9 chrX 44470293 44470507 -118129423 + AluSx SINE Alu 1 212 -100 368 96 0 9 chrX 44470507 44470599 -118129331 + AluSg/x SINE Alu 76 248 -52 1278 164 0 22 chrX 44470599 44470652 -118129278 + AluJb SINE Alu 85 138 -174 2099 148 0 7 chrX 44470652 44470955 -118128975 + AluSg SINE Alu 1 301 -9 1278 164 0 22 chrX 44470955 44471132 -118128798 + AluJb SINE Alu 138 310 -2 1880 196 53 24 chrX 44471136 44471294 -118128636 + L1M4 LINE L1 4476 4628 -1518 2570 51 14 0 chrX 44471294 44471589 -118128341 - AluSp SINE Alu -14 299 1 1880 196 53 24 chrX 44471589 44471883 -118128047 + L1M4 LINE L1 4628 4941 -1205 2085 119 0 10 chrX 44471896 44472190 -118127740 - AluSx SINE Alu 0 312 22 335 263 47 84 chrX 44472204 44472274 -118127656 + L1ME2 LINE L1 5972 6043 -121 2320 101 0 0 chrX 44472274 44472572 -118127358 - AluSg SINE Alu -12 298 1 335 263 47 84 chrX 44472572 44472620 -118127310 + L1ME2 LINE L1 6043 6091 -73 2479 66 10 13 chrX 44472620 44472925 -118127005 - AluY SINE Alu -7 304 1 335 263 47 84 chrX 44472925 44472995 -118126935 + L1ME2 LINE L1 6091 6154 -10 2736 29 0 22 chrX 44473010 44473326 -118126604 + AluY SINE Alu 1 309 -2 570 233 0 8 chrX 44473348 44473477 -118126453 + AluJo SINE Alu 2 129 -183 323 341 0 11 chrX 44473488 44473576 -118126354 - L1MC4 LINE L1 -1339 6703 6617 2294 81 18 0 chrX 44473576 44473860 -118126070 - AluSq SINE Alu -24 289 1 2416 65 0 7 chrX 44473866 44474160 -118125770 - AluSc SINE Alu -17 292 1 1244 145 0 0 chrX 44474179 44474351 -118125579 + AluJo SINE Alu 130 301 -11 706 144 0 17 chrX 44474356 44474474 -118125456 + AluSg/x SINE Alu 174 289 -21 994 188 53 122 chrX 44474487 44474864 -118125066 + L1MC4a LINE L1 6352 6702 -1106 2249 138 0 0 chrX 44474873 44475185 -118124745 - AluSx SINE Alu 0 312 1 1009 159 7 0 chrX 44475245 44475396 -118124534 + AluJo SINE Alu 6 157 -155 1187 153 0 11 chrX 44475397 44475580 -118124350 + AluJb SINE Alu 115 295 -17 2103 118 3 39 chrX 44475588 44475893 -118124037 + AluSq SINE Alu 1 294 -19 784 208 6 6 chrX 44475895 44476054 -118123876 + AluJo SINE Alu 137 295 -7 2353 111 0 0 chrX 44476066 44476372 -118123558 + AluSq SINE Alu 3 308 -5 2170 130 0 16 chrX 44476375 44476512 -118123418 + AluSx SINE Alu 1 139 -173 9406 24 0 0 chrX 44476512 44478453 -118121477 + L1PA3 LINE L1 4235 6155 0 2170 130 0 16 chrX 44478453 44478630 -118121300 + AluSx SINE Alu 139 310 -2 1911 185 31 24 chrX 44478702 44478975 -118120955 - MER68 LTR ERV1 -148 414 135 2054 120 3 3 chrX 44478975 44479296 -118120634 - AluSx SINE Alu 0 321 1 1911 185 31 24 chrX 44479296 44479404 -118120526 - MER68 LTR ERV1 -427 135 29 1844 103 4 0 chrX 44479466 44479709 -118120221 - AluSx SINE Alu -10 302 59 998 222 63 0 chrX 44479740 44479961 -118119969 - L1MC4 LINE L1 -513 7529 7295 388 94 0 0 chrX 44479961 44480014 -118119916 + AluJo SINE Alu 87 139 -163 1591 85 0 24 chrX 44480019 44480231 -118119699 + AluSq SINE Alu 1 207 -106 1203 95 0 0 chrX 44480231 44480379 -118119551 - AluSq/x SINE Alu -164 148 1 2434 94 0 0 chrX 44480379 44480687 -118119243 - AluSx SINE Alu -4 308 1 849 150 52 0 chrX 44480688 44480861 -118119069 - L1MC4 LINE L1 -828 7214 7033 763 87 0 0 chrX 44480882 44480985 -118118945 - L1MC4 LINE L1 -1153 6889 6787 531 261 29 19 chrX 44480977 44481184 -118118746 + L1 LINE L1 4141 4349 -1797 * 983 196 0 12 chrX 44481205 44481373 -118118557 + FAM SINE Alu 6 171 -14 325 238 29 57 chrX 44481384 44481489 -118118441 + L1 LINE L1 4366 4467 -1679 512 228 20 13 chrX 44481489 44481638 -118118292 + L1MC3 LINE L1 6086 6235 -1550 1929 132 48 0 chrX 44481639 44481934 -118117996 + AluSx SINE Alu 1 309 -3 2135 141 0 10 chrX 44481943 44482256 -118117674 + AluJb SINE Alu 1 310 -2 2364 81 3 19 chrX 44482262 44482569 -118117361 + AluSx SINE Alu 1 302 -10 2402 97 3 0 chrX 44482569 44482879 -118117051 + AluSp SINE Alu 1 312 -1 1096 103 0 0 chrX 44482885 44483021 -118116909 + AluSq/x SINE Alu 1 136 -177 2395 96 0 10 chrX 44483021 44483324 -118116606 + AluSx SINE Alu 1 300 -12 862 148 8 0 chrX 44483327 44483449 -118116481 - AluJo/FLAM SINE Alu -189 123 1 2409 64 7 7 chrX 44483458 44483756 -118116174 - AluSq SINE Alu -15 298 1 1117 209 104 3 chrX 44483880 44484167 -118115763 - L1ME3 LINE L1 -90 6072 5757 380 240 23 38 chrX 44484530 44484652 -118115278 + MIR SINE MIR 31 153 -76 26 0 0 0 chrX 44484660 44484686 -118115244 + AT_rich Low_complexity Low_complexity 1 26 0 2490 59 0 0 chrX 44484686 44484976 -118114954 - AluY SINE Alu -21 290 1 2157 72 11 0 chrX 44484979 44485244 -118114686 - AluSx SINE Alu -6 306 39 1562 279 78 7 chrX 44485265 44485713 -118114217 - MLT1J LTR MaLR -31 480 1 253 257 71 0 chrX 44486948 44487018 -118112912 - MER91B DNA MER1_type -26 164 90 2296 103 3 0 chrX 44487043 44487333 -118112597 + AluSx SINE Alu 2 292 -20 1025 187 21 43 chrX 44487386 44487621 -118112309 + MIR SINE MIR 12 241 -21 292 175 39 10 chrX 44488641 44488744 -118111186 + (TCTCTG)n Simple_repeat Simple_repeat 3 108 0 229 273 29 36 chrX 44488751 44488803 -118111127 + CT-rich Low_complexity Low_complexity 1 52 -86 2542 87 3 0 chrX 44488803 44489115 -118110815 - AluSp SINE Alu 0 313 1 229 273 29 36 chrX 44489115 44489201 -118110729 + CT-rich Low_complexity Low_complexity 52 138 0 214 328 0 0 chrX 44489326 44489384 -118110546 - L2 LINE L2 -92 3180 3123 333 0 0 0 chrX 44489450 44489487 -118110443 + (CA)n Simple_repeat Simple_repeat 2 38 0 591 69 0 0 chrX 44489822 44489894 -118110036 + AluS SINE Alu 24 95 -217 367 31 0 0 chrX 44489894 44489945 -118109985 - AluY SINE Alu -258 44 2 2194 112 0 6 chrX 44490208 44490522 -118109408 - AluSx SINE Alu 0 312 1 240 265 20 51 chrX 44490532 44490630 -118109300 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 830 168 7 21 chrX 44491299 44491442 -118108488 + FLAM_C SINE Alu 2 142 -1 2102 116 13 3 chrX 44491509 44491812 -118108118 + AluSq SINE Alu 1 306 -7 2323 90 0 0 chrX 44491928 44492227 -118107703 + AluSq SINE Alu 1 299 -14 268 269 124 54 chrX 44492247 44492528 -118107402 - L1MC4 LINE L1 -307 7735 7334 225 250 28 14 chrX 44492545 44492617 -118107313 - MIR SINE MIR -71 191 119 189 0 0 0 chrX 44492896 44492917 -118107013 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 386 298 16 25 chrX 44493266 44493511 -118106419 + CT-rich Low_complexity Low_complexity 1 242 0 180 296 0 0 chrX 44493637 44493681 -118106249 - MIR SINE MIR -164 98 55 368 328 17 11 chrX 44494070 44494274 -118105656 + (TCCA)n Simple_repeat Simple_repeat 1 205 0 216 0 0 0 chrX 44495234 44495258 -118104672 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 349 273 12 0 chrX 44495632 44495804 -118104126 + (TGGA)n Simple_repeat Simple_repeat 4 177 0 384 294 7 28 chrX 44495817 44495960 -118103970 + (TGGA)n Simple_repeat Simple_repeat 4 143 0 221 283 0 8 chrX 44496123 44496243 -118103687 + (TGGA)n Simple_repeat Simple_repeat 4 122 0 401 271 94 52 chrX 44496393 44496585 -118103345 - MIR SINE MIR -43 219 20 181 152 0 0 chrX 44497127 44497160 -118102770 - MIR SINE MIR -61 147 115 223 240 0 0 chrX 44497592 44497642 -118102288 + (CTG)n Simple_repeat Simple_repeat 3 52 0 2198 116 0 0 chrX 44500065 44500367 -118099563 - AluSx SINE Alu -10 302 1 372 224 31 31 chrX 44500368 44500466 -118099464 + MIR3 SINE MIR 104 201 -7 260 280 138 5 chrX 44500470 44500660 -118099270 + MIR SINE MIR 39 256 -6 23 0 0 0 chrX 44500785 44500808 -118099122 + AT_rich Low_complexity Low_complexity 1 23 0 268 285 180 23 chrX 44501085 44501257 -118098673 - MIR SINE MIR -5 257 59 278 205 19 28 chrX 44501878 44501966 -118097964 - MIR SINE MIR -60 148 60 256 320 94 8 chrX 44502657 44502785 -118097145 - L2 LINE L2 -214 3058 2920 2285 77 7 3 chrX 44503246 44503543 -118096387 - AluSc SINE Alu -11 298 1 1981 93 0 99 chrX 44503546 44503742 -118096188 - AluSq SINE Alu -12 301 150 2202 111 3 0 chrX 44503742 44504048 -118095882 - AluSg SINE Alu -3 307 1 1981 93 0 99 chrX 44504048 44504185 -118095745 - AluSq SINE Alu -163 150 1 976 245 36 5 chrX 44504185 44504482 -118095448 - L2 LINE L2 -235 3078 2775 628 233 140 40 chrX 44504498 44504726 -118095204 - MIR SINE MIR -1 261 11 247 196 0 0 chrX 44504751 44504797 -118095133 + MIR SINE MIR 205 250 -12 2407 71 0 0 chrX 44504822 44505119 -118094811 - AluY SINE Alu -14 297 1 2319 95 3 0 chrX 44505125 44505430 -118094500 - AluSx SINE Alu -6 306 1 316 240 279 0 chrX 44507142 44507246 -118092684 - MIR3 SINE MIR -37 171 39 281 198 245 28 chrX 44507387 44507493 -118092437 + MIR SINE MIR 22 150 -112 * 1098 332 102 10 chrX 44507491 44508270 -118091660 - L2 LINE L2 0 3272 2397 452 297 38 38 chrX 44508686 44508871 -118091059 - MIR SINE MIR -65 197 13 264 259 213 0 chrX 44508890 44508998 -118090932 - MIR SINE MIR -14 248 118 617 81 40 10 chrX 44509002 44509101 -118090829 + U6 snRNA snRNA 1 102 -5 186 323 21 21 chrX 44509123 44509219 -118090711 - MIR SINE MIR -81 127 32 2149 103 0 22 chrX 44509323 44509642 -118090288 + AluJo SINE Alu 1 312 0 342 45 0 0 chrX 44510524 44510568 -118089362 + (CCG)n Simple_repeat Simple_repeat 1 44 0 207 211 14 14 chrX 44510736 44510807 -118089123 + (CCG)n Simple_repeat Simple_repeat 3 73 0 * 240 253 23 0 chrX 44510795 44510882 -118089048 + (CGG)n Simple_repeat Simple_repeat 1 89 0 198 0 0 0 chrX 44511951 44511973 -118087957 + (CA)n Simple_repeat Simple_repeat 2 23 0 926 112 8 15 chrX 44514026 44514160 -118085770 + FLAM_A SINE Alu 1 133 0 282 270 0 22 chrX 44514698 44514787 -118085143 + MIR SINE MIR 45 131 -131 187 343 46 9 chrX 44515506 44515614 -118084316 + MIR SINE MIR 41 152 -56 2084 172 0 26 chrX 44515787 44516176 -118083754 - L1MB8 LINE L1 0 6178 5800 2196 109 0 6 chrX 44516202 44516514 -118083416 - AluSx SINE Alu -2 310 1 2252 79 0 3 chrX 44516662 44516953 -118082977 - AluY SINE Alu -21 290 1 1666 226 41 68 chrX 44517355 44517424 -118082506 - MLT1D LTR MaLR 0 505 436 2284 73 0 67 chrX 44517424 44517754 -118082176 + AluSg1 SINE Alu 1 308 -1 1666 226 41 68 chrX 44517754 44518114 -118081816 - MLT1D LTR MaLR -69 436 68 2053 102 48 0 chrX 44518122 44518417 -118081513 - AluSx SINE Alu -1 311 3 1783 138 13 20 chrX 44518417 44518582 -118081348 - AluJb SINE Alu -16 296 130 2217 107 0 0 chrX 44518582 44518890 -118081040 - AluSx SINE Alu -4 308 1 1783 138 13 20 chrX 44518890 44519020 -118080910 - AluJb SINE Alu -182 130 1 1666 226 41 68 chrX 44519020 44519106 -118080824 - MLT1D LTR MaLR -437 68 3 381 250 132 26 chrX 44519180 44519332 -118080598 - MIR SINE MIR -73 189 22 2145 114 0 16 chrX 44519904 44520220 -118079710 - AluSx SINE Alu -1 311 1 2443 73 3 3 chrX 44520552 44520865 -118079065 - AluSp SINE Alu 0 313 1 2023 134 0 19 chrX 44520876 44521189 -118078741 - AluSx SINE Alu -5 307 1 315 345 52 0 chrX 44521280 44521396 -118078534 + L2 LINE L2 3151 3272 0 283 258 168 3 chrX 44521979 44522122 -118077808 - MIR3 SINE MIR -79 183 1 24 0 0 0 chrX 44522426 44522450 -118077480 + AT_rich Low_complexity Low_complexity 1 24 0 878 210 101 34 chrX 44522476 44522716 -118077214 - MER46C DNA MER2_type -23 315 54 2407 72 0 0 chrX 44522716 44523020 -118076910 + AluY SINE Alu 1 304 -7 878 210 101 34 chrX 44523020 44523046 -118076884 - MER46C DNA MER2_type -284 54 31 2197 100 3 3 chrX 44523243 44523544 -118076386 - AluSp SINE Alu -12 301 1 400 291 47 20 chrX 44524384 44524532 -118075398 - MIR SINE MIR -96 166 15 874 214 21 83 chrX 44524647 44524984 -118074946 - L1MC5 LINE L1 -28 7933 7618 263 262 195 20 chrX 44525137 44525286 -118074644 + MIR3 SINE MIR 30 204 -4 413 275 112 17 chrX 44525322 44525500 -118074430 + MIR SINE MIR 49 243 -19 626 101 9 0 chrX 44525947 44526056 -118073874 + (TG)n Simple_repeat Simple_repeat 2 111 0 236 280 140 0 chrX 44526702 44526795 -118073135 - MIR SINE MIR -109 153 48 2317 94 0 7 chrX 44526815 44527124 -118072806 - AluSg SINE Alu -3 307 1 210 299 11 46 chrX 44527145 44527232 -118072698 + MIR SINE MIR 48 131 -77 240 259 59 87 chrX 44527782 44527923 -118072007 - MIR3 SINE MIR -11 197 54 180 246 53 18 chrX 44528967 44529024 -118070906 - MIR SINE MIR -115 147 89 2228 100 0 3 chrX 44529563 44529864 -118070066 - AluSq SINE Alu -13 300 1 345 368 88 0 chrX 44530490 44530661 -118069269 - MIR SINE MIR -14 248 63 1128 133 0 0 chrX 44531729 44531894 -118068036 + FRAM SINE Alu 1 165 -1 182 376 32 0 chrX 44531911 44532004 -118067926 - L2 LINE L2 -274 2998 2903 244 309 105 46 chrX 44532039 44532191 -118067739 + L2 LINE L2 3082 3242 -30 520 288 0 65 chrX 44532215 44532313 -118067617 - MIR SINE MIR -13 249 171 2368 82 0 0 chrX 44532313 44532616 -118067314 - AluSx SINE Alu -9 303 1 520 288 0 65 chrX 44532616 44532732 -118067198 - MIR SINE MIR -91 171 49 216 214 0 0 chrX 44532732 44532774 -118067156 + T-rich Low_complexity Low_complexity 1 42 0 412 300 8 17 chrX 44532800 44532920 -118067010 + MIR SINE MIR 34 152 -56 219 333 54 0 chrX 44534134 44534227 -118065703 + MIR SINE MIR 10 107 -155 1355 178 55 20 chrX 44534500 44534556 -118065374 - L1MC3 LINE L1 -2 7783 7730 2218 103 0 7 chrX 44534556 44534856 -118065074 + AluSx SINE Alu 1 298 -14 1355 178 55 20 chrX 44534856 44535271 -118064659 - L1MC3 LINE L1 -55 7730 5814 1329 148 0 130 chrX 44535287 44535611 -118064319 - AluSx SINE Alu -30 282 1 2014 117 7 13 chrX 44535646 44535946 -118063984 + AluSx SINE Alu 1 298 -14 653 194 25 90 chrX 44535968 44536069 -118063861 - L1MC2 LINE L1 -11 6333 6227 2251 83 7 0 chrX 44536069 44536401 -118063529 - AluSq SINE Alu 0 334 1 653 194 25 90 chrX 44536401 44536472 -118063458 - L1MC2 LINE L1 -117 6227 6171 2328 83 3 0 chrX 44536472 44536773 -118063157 - AluSq SINE Alu -11 302 1 653 194 25 90 chrX 44536773 44536798 -118063132 - L1MC2 LINE L1 -173 6171 6146 * 1488 161 68 7 chrX 44536785 44537095 -118062835 - L1MC3 LINE L1 -256 7529 7201 271 277 42 34 chrX 44537097 44537216 -118062714 - MLT1F1 LTR MaLR -434 133 14 2200 86 0 10 chrX 44537291 44537593 -118062337 - AluSq SINE Alu -14 299 1 2532 156 52 86 chrX 44537594 44538136 -118061794 - L1MC3 LINE L1 -1002 6783 6224 2428 64 0 3 chrX 44538136 44538448 -118061482 - AluY SINE Alu 0 311 1 2532 156 52 86 chrX 44538448 44538528 -118061402 - L1MC3 LINE L1 -1561 6224 6143 2168 94 7 10 chrX 44538528 44538825 -118061105 - AluSx SINE Alu -10 302 7 2532 156 52 86 chrX 44538825 44538844 -118061086 - L1MC3 LINE L1 -1642 6143 6125 208 0 0 0 chrX 44538844 44538867 -118061063 + (TTTTA)n Simple_repeat Simple_repeat 3 170 0 2169 91 3 3 chrX 44538867 44539164 -118060766 - AluSx SINE Alu -1 319 1 2532 156 52 86 chrX 44539164 44539425 -118060505 - L1MC3 LINE L1 -1659 6126 5858 1680 148 24 24 chrX 44539425 44539716 -118060214 - AluJb SINE Alu -11 301 11 2532 156 52 86 chrX 44539716 44540302 -118059628 - L1MC3 LINE L1 -1927 5858 5339 3875 175 86 22 chrX 44540305 44541075 -118058855 + MER21B LTR ERV1 40 858 -5 2275 86 0 7 chrX 44541618 44541921 -118058009 + AluSx SINE Alu 1 301 -11 2447 60 0 0 chrX 44542970 44543272 -118056658 - AluY SINE Alu -9 302 1 1127 267 100 30 chrX 44543285 44544039 -118055891 - L2 LINE L2 -5 3308 2468 225 242 71 99 chrX 44546776 44546833 -118053097 + MIR SINE MIR 86 143 -119 2219 107 0 0 chrX 44546833 44547132 -118052798 + AluSx SINE Alu 1 299 -13 225 242 71 99 chrX 44547132 44547256 -118052674 + MIR SINE MIR 143 262 0 263 261 11 11 chrX 44549846 44549938 -118049992 + (TG)n Simple_repeat Simple_repeat 2 93 0 2225 92 0 0 chrX 44551101 44551396 -118048534 - AluSx SINE Alu -17 295 1 2104 105 0 3 chrX 44551407 44551702 -118048228 - AluSg SINE Alu -16 294 1 1130 37 7 0 chrX 44551703 44551839 -118048091 - AluSp SINE Alu -176 137 1 201 288 0 45 chrX 44551939 44552005 -118047925 - L2 LINE L2 0 3313 3251 322 227 23 11 chrX 44552068 44552156 -118047774 - L2 LINE L2 -1 3312 3224 214 253 160 0 chrX 44552219 44552294 -118047636 - L2 LINE L2 -2 3311 3225 1350 163 156 0 chrX 44552345 44552615 -118047315 - AluJo SINE Alu 0 312 1 192 259 19 0 chrX 44552720 44552774 -118047156 - MIR SINE MIR -76 132 78 207 0 0 0 chrX 44554138 44554161 -118045769 + (GCCTG)n Simple_repeat Simple_repeat 3 25 0 186 43 0 0 chrX 44554691 44554714 -118045216 + (T)n Simple_repeat Simple_repeat 1 23 0 1286 137 40 0 chrX 44555669 44555895 -118044035 - AluSx SINE Alu -77 235 1 189 0 0 0 chrX 44556829 44556850 -118043080 + (TG)n Simple_repeat Simple_repeat 1 21 0 296 290 46 30 chrX 44557785 44557916 -118042014 + MIR SINE MIR 119 251 -11 416 160 10 175 chrX 44558706 44558906 -118041024 - L1MC5 LINE L1 -39 7922 7756 1328 49 0 12 chrX 44558955 44559118 -118040812 - AluSg SINE Alu -139 171 11 413 221 75 55 chrX 44559127 44559326 -118040604 - L1MC5 LINE L1 -426 7535 7333 2097 79 0 7 chrX 44559853 44560130 -118039800 + AluSg SINE Alu 1 275 -35 2292 99 0 0 chrX 44560227 44560529 -118039401 - AluSq SINE Alu -11 302 1 1835 90 0 0 chrX 44560723 44560967 -118038963 + AluY SINE Alu 2 245 -66 2167 122 0 3 chrX 44561070 44561381 -118038549 - AluSg SINE Alu 0 310 1 319 319 7 37 chrX 44561973 44562108 -118037822 + MIR SINE MIR 80 210 -52 1084 259 4 8 chrX 44562158 44562409 -118037521 + MIR SINE MIR 13 262 0 285 333 56 35 chrX 44562417 44562561 -118037369 - MIR SINE MIR -64 198 52 2187 113 0 0 chrX 44566490 44566790 -118033140 + AluSq SINE Alu 1 300 -13 1715 126 12 114 chrX 44567378 44567712 -118032218 + AluJo SINE Alu 1 300 -2 1666 80 9 4 chrX 44567758 44567984 -118031946 + AluSg/x SINE Alu 85 311 -1 2185 88 0 3 chrX 44568006 44568300 -118031630 - AluY SINE Alu -18 293 1 1725 176 0 13 chrX 44568649 44568961 -118030969 - AluJb SINE Alu -4 308 1 2131 99 3 13 chrX 44568989 44569292 -118030638 + AluSx SINE Alu 2 301 -11 1164 111 6 28 chrX 44569294 44569474 -118030456 + AluSg/x SINE Alu 137 312 0 2066 122 7 0 chrX 44571791 44572085 -118027845 - AluSx SINE Alu -16 296 1 1917 122 0 39 chrX 44572088 44572399 -118027531 - AluJb SINE Alu -7 305 7 309 297 42 0 chrX 44572511 44572629 -118027301 + L2 LINE L2 2152 2274 -1040 * 586 314 47 60 chrX 44572627 44572926 -118027004 + L2 LINE L2 2957 3251 -21 222 91 0 0 chrX 44572934 44572967 -118026963 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 347 292 60 30 chrX 44573368 44573552 -118026378 + MIR SINE MIR 24 211 -51 246 208 0 0 chrX 44573615 44573663 -118026267 + L2 LINE L2 3251 3298 -15 2268 87 3 3 chrX 44575387 44575686 -118024244 - AluSx SINE Alu -13 299 1 1180 37 0 0 chrX 44575686 44575821 -118024109 - AluSq/x SINE Alu -177 135 1 313 342 0 6 chrX 44577214 44577418 -118022512 + GA-rich Low_complexity Low_complexity 1 202 0 259 293 7 40 chrX 44577968 44578095 -118021835 + GA-rich Low_complexity Low_complexity 1 131 -719 2045 98 49 0 chrX 44578095 44578380 -118021550 + AluSx SINE Alu 1 299 -13 259 293 7 40 chrX 44578380 44578392 -118021538 + GA-rich Low_complexity Low_complexity 131 142 -708 2066 113 3 0 chrX 44578392 44578683 -118021247 + AluSx SINE Alu 1 292 -20 259 293 7 40 chrX 44578683 44578848 -118021082 + GA-rich Low_complexity Low_complexity 142 850 0 355 305 19 0 chrX 44579072 44579177 -118020753 - MIR SINE MIR -107 155 49 640 106 0 0 chrX 44579179 44579264 -118020666 + AluJ/FLAM SINE Alu 2 86 -226 2089 135 0 0 chrX 44579400 44579711 -118020219 - AluSx SINE Alu -1 311 1 257 0 30 0 chrX 44579711 44579744 -118020186 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2053 105 0 31 chrX 44579744 44580038 -118019892 - AluSx SINE Alu -27 285 1 374 39 0 0 chrX 44580046 44580098 -118019832 - L1MA5 LINE L1 -2 6298 6247 1536 157 53 11 chrX 44580099 44580261 -118019669 - AluJb SINE Alu -19 293 139 305 24 24 0 chrX 44580261 44580303 -118019627 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 2299 46 0 3 chrX 44580303 44580585 -118019345 - AluY SINE Alu -30 281 1 1536 157 53 11 chrX 44580585 44580702 -118019228 - AluJb SINE Alu -172 140 1 2011 145 0 3 chrX 44581197 44581501 -118018429 - AluJb SINE Alu -9 303 1 821 94 34 0 chrX 44581834 44581951 -118017979 - HSMAR2 DNA Mariner -319 983 863 2428 63 0 0 chrX 44581963 44582262 -118017668 - AluY SINE Alu -12 299 1 2313 72 0 3 chrX 44582263 44582555 -118017375 - AluY SINE Alu -20 291 1 1983 130 0 10 chrX 44582556 44582857 -118017073 - AluSq SINE Alu -15 298 1 437 97 0 0 chrX 44582857 44582919 -118017011 + MER4C LTR ERV1 404 465 0 904 225 49 85 chrX 44582922 44582989 -118016941 - L1MDa LINE L1 -6197 343 275 860 160 0 8 chrX 44582989 44583120 -118016810 - FLAM_A SINE Alu -1 132 3 904 225 49 85 chrX 44583120 44583381 -118016549 - L1MDa LINE L1 -6265 275 27 2340 93 0 3 chrX 44583630 44583941 -118015989 + AluSg SINE Alu 1 310 0 1806 166 0 10 chrX 44583984 44584298 -118015632 + AluJb SINE Alu 1 311 -1 677 253 16 21 chrX 44584301 44584487 -118015443 + PABL_B LTR ERV1 456 640 -27 2122 120 10 0 chrX 44584545 44584853 -118015077 + AluSx SINE Alu 1 311 -1 2204 96 0 7 chrX 44584857 44585160 -118014770 - AluSq SINE Alu -12 301 1 4843 246 21 13 chrX 44585175 44586442 -118013488 - L1MDa LINE L1 -2229 4311 3029 2173 125 0 0 chrX 44586442 44586745 -118013185 - AluSx SINE Alu -9 303 1 4843 246 21 13 chrX 44586745 44586967 -118012963 - L1MDa LINE L1 -3511 3029 2810 2121 90 3 7 chrX 44586971 44587259 -118012671 - AluSc SINE Alu -22 287 1 495 177 48 24 chrX 44587259 44587369 -118012561 - L1M2 LINE L1 -511 5780 5665 1987 104 0 11 chrX 44587369 44587649 -118012281 - AluSp SINE Alu -11 302 26 495 177 48 24 chrX 44587649 44587662 -118012268 - L1M2 LINE L1 -626 5665 5654 709 204 0 8 chrX 44587673 44587805 -118012125 - FLAM_A SINE Alu -2 131 1 2036 113 17 10 chrX 44587805 44587817 -118012113 - AluSx SINE Alu 0 312 302 208 88 0 0 chrX 44587817 44587851 -118012079 + (TTTTA)n Simple_repeat Simple_repeat 2 160 0 2036 113 17 10 chrX 44587851 44588129 -118011801 - AluSx SINE Alu -10 302 1 2133 110 0 0 chrX 44588135 44588426 -118011504 - AluSg SINE Alu -19 291 1 4322 216 52 46 chrX 44588430 44588589 -118011341 - L1MDa LINE L1 -4017 2523 2366 1243 186 22 119 chrX 44588589 44588992 -118010938 + MLT1A1 LTR MaLR 2 365 0 4322 216 52 46 chrX 44588992 44589411 -118010519 - L1MDa LINE L1 -4174 2366 1951 1711 199 21 39 chrX 44589411 44589792 -118010138 + MLT1A2 LTR MaLR 1 374 0 4322 216 52 46 chrX 44589792 44590392 -118009538 - L1MDa LINE L1 -4589 1951 1356 2149 80 26 0 chrX 44590392 44590694 -118009236 - AluSq SINE Alu -3 310 1 4322 216 52 46 chrX 44590694 44590772 -118009158 - L1MDa LINE L1 -5184 1356 1280 1803 151 3 7 chrX 44590772 44591064 -118008866 - AluJb SINE Alu -21 291 1 4322 216 52 46 chrX 44591064 44591195 -118008735 - L1MDa LINE L1 -5260 1280 1125 1722 147 0 18 chrX 44591195 44591506 -118008424 - AluJb SINE Alu 0 306 1 1973 94 3 11 chrX 44591508 44591794 -118008136 - HSMAR2 DNA Mariner -965 337 54 334 190 63 13 chrX 44591794 44591873 -118008057 + L1ME3A LINE L1 3111 3193 -2953 330 139 0 42 chrX 44591879 44591951 -118007979 - HSMAR2 DNA Mariner -1232 70 2 782 263 38 82 chrX 44591951 44592152 -118007778 + L1ME3A LINE L1 5266 5474 -688 2111 98 0 10 chrX 44592152 44592448 -118007482 - AluSx SINE Alu -19 293 1 782 263 38 82 chrX 44592448 44592582 -118007348 + L1ME3A LINE L1 5474 5581 -581 2222 115 0 0 chrX 44592582 44592894 -118007036 - AluSq SINE Alu -1 312 1 782 263 38 82 chrX 44592894 44592983 -118006947 + L1ME3A LINE L1 5581 5672 -490 32975 32 4 3 chrX 44593008 44597296 -118002634 - L1PA4 LINE L1 -2 6153 1858 2233 86 6 19 chrX 44597296 44597610 -118002320 - AluSq SINE Alu -2 311 2 32975 32 4 3 chrX 44597610 44598037 -118001893 - L1PA4 LINE L1 -4297 1858 1433 5483 57 0 0 chrX 44598036 44598718 -118001212 + L1PA4 LINE L1 746 1427 -4719 * 662 212 20 0 chrX 44598716 44598867 -118001063 + L1ME3A LINE L1 5658 5811 -359 * 265 205 45 89 chrX 44598867 44598979 -118000951 + LTR40a LTR ERVL 41 147 -372 240 312 135 28 chrX 44599066 44599281 -118000649 + LTR40a LTR ERVL 186 423 -96 360 0 0 0 chrX 44599283 44599323 -118000607 + (TG)n Simple_repeat Simple_repeat 2 41 0 1168 148 10 15 chrX 44599323 44599525 -118000405 - AluJo SINE Alu -27 285 85 458 65 32 0 chrX 44599582 44599644 -118000286 + LTR40a LTR ERVL 451 514 -5 511 199 23 30 chrX 44599650 44599781 -118000149 + L1ME3A LINE L1 5810 5939 -231 2026 133 3 13 chrX 44599791 44600106 -117999824 + AluSq SINE Alu 1 312 -1 928 151 13 0 chrX 44600183 44600342 -117999588 - FRAM SINE Alu 0 176 16 2201 97 3 3 chrX 44600440 44600740 -117999190 - AluSc SINE Alu -9 300 1 2505 48 0 6 chrX 44600867 44601180 -117998750 - AluY SINE Alu 0 311 1 294 163 0 0 chrX 44601299 44601348 -117998582 - MER90 LTR ERV1 -3 611 563 1327 71 0 0 chrX 44601355 44601523 -117998407 - AluSg/x SINE Alu -11 301 134 2079 115 0 7 chrX 44601523 44601828 -117998102 - AluSq SINE Alu -10 303 1 477 207 0 11 chrX 44601831 44601918 -117998012 - MER90 LTR ERV1 -50 564 479 1423 163 0 4 chrX 44601920 44602159 -117997771 + AluJo SINE Alu 1 238 -74 273 109 0 0 chrX 44602163 44602209 -117997721 + (A)n Simple_repeat Simple_repeat 1 46 0 2127 113 3 10 chrX 44602211 44602521 -117997409 + AluSg SINE Alu 1 308 -2 2302 207 38 4 chrX 44602535 44603004 -117996926 - MER90 LTR ERV1 -129 485 1 780 164 23 64 chrX 44603033 44603204 -117996726 - LTR52 LTR ERVL -11 410 247 1769 152 14 3 chrX 44603207 44603504 -117996426 - AluJb SINE Alu -12 300 1 2310 173 29 62 chrX 44603505 44603574 -117996356 - L1 LINE L1 -768 5378 5308 2081 118 0 3 chrX 44603574 44603870 -117996060 + AluSx SINE Alu 1 295 -17 2310 173 29 62 chrX 44603870 44604199 -117995731 - L1 LINE L1 -838 5308 5000 2057 111 3 0 chrX 44604199 44604487 -117995443 - AluSx SINE Alu -23 289 1 2310 173 29 62 chrX 44604487 44604637 -117995293 - L1 LINE L1 -1146 5000 4847 1032 144 39 62 chrX 44604679 44604729 -117995201 - MSTD LTR MaLR 0 396 346 2208 110 0 0 chrX 44604729 44605028 -117994902 - AluSg SINE Alu -11 299 1 1032 144 39 62 chrX 44605028 44605185 -117994745 - MSTD LTR MaLR -50 346 194 1150 99 93 0 chrX 44605185 44605346 -117994584 + THE1B LTR MaLR 1 176 -188 1898 180 80 34 chrX 44605349 44605788 -117994142 - LTR2B LTR ERV1 0 490 32 54137 54 20 19 chrX 44605807 44610258 -117989672 - Harlequin LTR ERV1 0 6896 2429 2212 50 53 0 chrX 44610258 44610540 -117989390 - AluY SINE Alu -14 297 1 54137 54 20 19 chrX 44610540 44612973 -117986957 - Harlequin LTR ERV1 -4467 2429 1 1919 177 98 30 chrX 44612973 44613403 -117986527 - LTR2B LTR ERV1 0 490 32 11231 91 42 1 chrX 44613452 44614970 -117984960 + THE1B-int LTR MaLR 1 1580 0 2412 99 73 14 chrX 44614970 44615314 -117984616 + THE1B LTR MaLR 1 364 0 865 153 53 0 chrX 44615335 44615485 -117984445 - MSTD LTR MaLR -237 159 2 2618 205 81 39 chrX 44615486 44615702 -117984228 - MSTD-int LTR MaLR 0 1735 1530 2086 117 0 0 chrX 44615702 44615993 -117983937 + AluSx SINE Alu 1 291 -21 2618 205 81 39 chrX 44615993 44616395 -117983535 - MSTD-int LTR MaLR -205 1530 1091 824 159 0 7 chrX 44616385 44616536 -117983394 - L1 LINE L1 -1431 4715 4566 * 1563 164 3 33 chrX 44616548 44616847 -117983083 - AluJb SINE Alu -22 290 1 865 118 0 0 chrX 44616849 44616976 -117982954 - AluJb SINE Alu -180 132 6 1373 172 15 0 chrX 44616981 44617254 -117982676 - L1 LINE L1 -1567 4579 4303 3422 121 28 90 chrX 44617255 44617423 -117982507 + L1MA10 LINE L1 5666 5843 -491 2048 122 3 13 chrX 44617423 44617735 -117982195 + AluSx SINE Alu 1 309 -3 3422 121 28 90 chrX 44617735 44618279 -117981651 + L1MA10 LINE L1 5843 6334 0 1829 164 0 3 chrX 44618290 44618600 -117981330 + AluSx SINE Alu 1 309 -3 2179 92 0 32 chrX 44618656 44618970 -117980960 + AluSq SINE Alu 1 304 -9 1585 171 0 38 chrX 44618970 44619261 -117980669 - AluSx SINE Alu -31 281 1 1929 128 0 10 chrX 44619811 44620108 -117979822 - AluSx SINE Alu -18 294 1 979 128 34 0 chrX 44620113 44620262 -117979668 - AluJ SINE Alu -17 295 142 1734 145 3 7 chrX 44620375 44620665 -117979265 + AluJb SINE Alu 1 289 -23 876 137 15 0 chrX 44620776 44620907 -117979023 - AluJ SINE Alu -169 133 1 2362 78 3 0 chrX 44621146 44621455 -117978475 - AluSp SINE Alu -3 310 1 1522 138 7 39 chrX 44621729 44622011 -117977919 - AluJb SINE Alu -39 273 1 739 139 25 0 chrX 44622037 44622159 -117977771 - L1MB1 LINE L1 -1 6167 6043 2089 110 6 31 chrX 44622167 44622486 -117977444 - AluSx SINE Alu -1 311 1 2104 109 3 3 chrX 44622548 44622842 -117977088 + AluSx SINE Alu 1 294 -18 1311 84 0 0 chrX 44622842 44623009 -117976921 + AluSp SINE Alu 134 300 -13 975 136 0 13 chrX 44623012 44623166 -117976764 - L1MB1 LINE L1 -159 6009 5858 312 265 10 69 chrX 44623315 44623417 -117976513 - MER89-int LTR ERV1 -2536 2111 2016 2086 114 7 0 chrX 44623522 44623830 -117976100 - AluSx SINE Alu -2 310 1 844 108 46 0 chrX 44623830 44623960 -117975970 - AluSq/x SINE Alu -176 136 1 2508 47 0 0 chrX 44624146 44624444 -117975486 + AluY SINE Alu 1 298 -13 234 62 0 0 chrX 44624522 44624554 -117975376 + (TC)n Simple_repeat Simple_repeat 2 33 0 276 30 0 0 chrX 44624561 44624594 -117975336 + (TG)n Simple_repeat Simple_repeat 2 34 0 2048 113 0 7 chrX 44624595 44624888 -117975042 - AluSc SINE Alu -18 291 1 1782 86 0 0 chrX 44624919 44625152 -117974778 - AluSx SINE Alu -78 234 2 2644 150 33 2 chrX 44625152 44625611 -117974319 - L1MB3 LINE L1 -83 6100 5628 21 36 0 0 chrX 44625627 44625655 -117974275 + AT_rich Low_complexity Low_complexity 1 28 0 1759 138 0 4 chrX 44625656 44625931 -117973999 + AluSx SINE Alu 1 274 -38 207 0 0 0 chrX 44625939 44625962 -117973968 + (TAA)n Simple_repeat Simple_repeat 2 24 0 820 167 0 0 chrX 44626007 44626133 -117973797 - FLAM_C SINE Alu -13 130 5 253 304 98 21 chrX 44626147 44626341 -117973589 - MER89-int LTR ERV1 -3190 3611 3403 216 0 0 0 chrX 44626803 44626827 -117973103 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 826 161 20 7 chrX 44626828 44626977 -117972953 - AluJb SINE Alu -25 287 137 1839 132 7 14 chrX 44627193 44627488 -117972442 + AluSx SINE Alu 3 295 -17 2131 103 0 0 chrX 44627523 44627834 -117972096 + AluSx SINE Alu 1 312 0 1814 147 0 3 chrX 44628063 44628349 -117971581 + AluSx SINE Alu 1 285 -27 22 56 0 0 chrX 44628421 44628457 -117971473 + AT_rich Low_complexity Low_complexity 1 36 0 2181 81 3 0 chrX 44628650 44628935 -117970995 - AluSc SINE Alu -23 286 1 277 120 80 0 chrX 44628941 44628991 -117970939 - L1MA3 LINE L1 0 6305 6252 * 997 128 6 3 chrX 44628974 44628991 -117970939 - L1MB7 LINE L1 -336 5844 5829 1761 108 93 0 chrX 44628991 44629260 -117970670 - AluSx SINE Alu -18 294 1 997 128 6 3 chrX 44629260 44629419 -117970511 - L1MB7 LINE L1 -351 5829 5671 1989 129 3 3 chrX 44629441 44629751 -117970179 + AluJb SINE Alu 1 310 -2 293 302 9 9 chrX 44629842 44629958 -117969972 - L1M4 LINE L1 -1538 4608 4493 2188 98 0 7 chrX 44629962 44630259 -117969671 - AluSx SINE Alu -17 295 1 269 250 129 35 chrX 44630276 44630392 -117969538 - HAL1b LINE L1 -34 1314 1188 205 167 0 0 chrX 44630470 44630506 -117969424 + (TATG)n Simple_repeat Simple_repeat 1 36 0 219 291 9 27 chrX 44630516 44630626 -117969304 + (CAGAGA)n Simple_repeat Simple_repeat 4 111 0 1734 144 7 3 chrX 44630692 44630990 -117968940 + AluSx SINE Alu 1 299 -13 210 267 35 43 chrX 44631039 44631155 -117968775 - MIR SINE MIR -71 191 77 21 0 0 0 chrX 44631632 44631653 -117968277 + GC_rich Low_complexity Low_complexity 1 21 0 282 29 0 0 chrX 44632289 44632324 -117967606 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 288 0 0 0 chrX 44632323 44632355 -117967575 + (TG)n Simple_repeat Simple_repeat 1 32 0 248 180 0 0 chrX 44633080 44633130 -117966800 - L1ME3 LINE L1 -204 5958 5909 1156 264 74 58 chrX 44633236 44633732 -117966198 - L1ME3 LINE L1 -286 5884 5375 1550 179 16 13 chrX 44633732 44634039 -117965891 - AluJo SINE Alu -4 308 1 1156 264 74 58 chrX 44634039 44634160 -117965770 - L1ME3 LINE L1 -795 5375 5257 338 228 59 50 chrX 44634362 44634463 -117965467 + L1MC/D LINE L1 5640 5741 -2067 228 253 0 46 chrX 44635099 44635186 -117964744 + C-rich Low_complexity Low_complexity 1 83 0 302 176 20 0 chrX 44636102 44636153 -117963777 + MER115 DNA AcHobo 8 59 -634 866 253 58 65 chrX 44636265 44636707 -117963223 + MER115 DNA AcHobo 207 685 -8 327 332 199 18 chrX 44636774 44637000 -117962930 + L2 LINE L2 3006 3313 0 951 170 12 12 chrX 44638294 44638465 -117961465 - L1MB8 LINE L1 -6 6172 6002 313 228 51 0 chrX 44638473 44638552 -117961378 + L2 LINE L2 3209 3291 -22 189 258 0 118 chrX 44638547 44638640 -117961290 - L2 LINE L2 -89 3224 3143 * 319 225 121 55 chrX 44638665 44638807 -117961123 - L2 LINE L2 0 3313 3155 2234 78 3 10 chrX 44638807 44639113 -117960817 + AluSq SINE Alu 1 304 -9 319 225 121 55 chrX 44639113 44639152 -117960778 - L2 LINE L2 -158 3155 3120 338 215 181 62 chrX 44639196 44639340 -117960590 - L2 LINE L2 0 3313 3153 262 209 15 15 chrX 44640717 44640784 -117959146 + C-rich Low_complexity Low_complexity 3 69 0 311 247 139 77 chrX 44641134 44641246 -117958684 + MLT1J LTR MaLR 107 237 -274 2081 123 7 0 chrX 44641246 44641547 -117958383 + AluSq SINE Alu 3 305 -8 311 247 139 77 chrX 44641547 44641628 -117958302 + MLT1J LTR MaLR 237 312 -199 337 250 95 0 chrX 44644760 44644844 -117955086 - MIR SINE MIR 0 262 171 528 259 108 27 chrX 44645039 44645224 -117954706 - MIR SINE MIR -62 200 1 344 247 89 62 chrX 44645240 44645327 -117954603 + MIR SINE MIR 71 154 -108 2273 92 0 16 chrX 44645327 44645643 -117954287 + AluSx SINE Alu 1 311 -1 1916 110 59 7 chrX 44645647 44645937 -117953993 + AluSg SINE Alu 4 308 -2 344 247 89 62 chrX 44645937 44645990 -117953940 + MIR SINE MIR 156 220 -42 1939 134 0 3 chrX 44645997 44646313 -117953617 + AluSx SINE Alu 1 312 0 198 196 0 22 chrX 44646357 44646403 -117953527 - MIR SINE MIR -107 155 111 881 243 16 51 chrX 44646481 44646736 -117953194 + MIR SINE MIR 17 262 0 213 258 21 81 chrX 44647183 44647298 -117952632 + (CAGAGA)n Simple_repeat Simple_repeat 2 103 -73 2266 78 10 0 chrX 44647298 44647591 -117952339 + AluY SINE Alu 1 296 -15 213 258 21 81 chrX 44647591 44647661 -117952269 + (CAGAGA)n Simple_repeat Simple_repeat 103 176 0 2349 77 0 10 chrX 44649856 44650168 -117949762 - AluY SINE Alu 0 311 3 806 189 88 0 chrX 44650171 44650319 -117949611 - AluJb SINE Alu -17 295 135 402 276 50 14 chrX 44651810 44652013 -117947917 - MIR SINE MIR 0 262 51 469 324 0 0 chrX 44652788 44652967 -117946963 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 2266 100 0 3 chrX 44653929 44654239 -117945691 + AluSx SINE Alu 1 309 -3 242 325 31 43 chrX 44654385 44654548 -117945382 + HAL1 LINE L1 3 163 -2344 689 233 5 15 chrX 44655072 44655278 -117944652 + L1MC5 LINE L1 7645 7848 -113 467 245 69 69 chrX 44655288 44655476 -117944454 + L1M4 LINE L1 3074 3261 -2885 370 272 126 46 chrX 44655675 44655824 -117944106 + HAL1 LINE L1 816 952 -1555 2241 96 0 0 chrX 44655824 44656116 -117943814 - AluSx SINE Alu -20 292 1 370 272 126 46 chrX 44656116 44656315 -117943615 + HAL1 LINE L1 952 1192 -1315 1395 141 0 9 chrX 44656315 44656561 -117943369 + AluJb SINE Alu 87 312 0 509 266 181 16 chrX 44656563 44656762 -117943168 + HAL1 LINE L1 1197 1362 -1145 1865 159 3 13 chrX 44656762 44657070 -117942860 + AluJo SINE Alu 1 305 -7 509 266 181 16 chrX 44657070 44657174 -117942756 + HAL1 LINE L1 1362 1550 -957 1520 132 0 60 chrX 44657264 44657322 -117942608 + MER46A DNA MER2_type 1 61 -2670 2094 96 17 7 chrX 44657322 44657615 -117942315 - AluSx SINE Alu -16 296 1 1520 132 0 60 chrX 44657615 44657807 -117942123 + MER46A DNA MER2_type 61 236 0 864 301 88 22 chrX 44657849 44658394 -117941536 + L1MC4a LINE L1 5532 6103 -18 358 292 140 0 chrX 44658538 44658716 -117941214 + MIR SINE MIR 49 251 -11 2337 81 0 3 chrX 44659326 44659634 -117940296 + AluSc SINE Alu 1 307 -2 25 0 0 0 chrX 44659743 44659768 -117940162 + AT_rich Low_complexity Low_complexity 1 25 0 401 290 143 18 chrX 44659778 44659995 -117939935 + L1MC4a LINE L1 5694 5937 -1871 849 203 6 11 chrX 44660014 44660191 -117939739 - MER104 DNA MER2_type -4 176 1 204 330 51 66 chrX 44660976 44661173 -117938757 + L2 LINE L2 2920 3113 -159 328 308 135 26 chrX 44661208 44661364 -117938566 - MIR SINE MIR -1 261 89 1146 270 88 31 chrX 44661849 44662532 -117937398 + L2 LINE L2 2550 3293 -20 888 288 160 19 chrX 44662656 44662949 -117936981 - L2 LINE L2 -245 3068 2818 2182 117 3 3 chrX 44662949 44663258 -117936672 - AluSq SINE Alu -4 309 1 888 288 160 19 chrX 44663258 44663468 -117936462 - L2 LINE L2 -495 2818 2502 266 333 69 87 chrX 44663499 44663775 -117936155 + L2 LINE L2 3001 3271 -1 297 229 0 0 chrX 44666002 44666063 -117933867 - MIR SINE MIR -84 178 118 424 193 12 0 chrX 44666073 44666156 -117933774 + MIR SINE MIR 78 161 -101 640 112 128 40 chrX 44666737 44666862 -117933068 - MER58C DNA MER1_type 0 215 80 1873 144 3 23 chrX 44667212 44667518 -117932412 - AluJb SINE Alu -2 310 11 1856 151 3 16 chrX 44667683 44667987 -117931943 + AluJb SINE Alu 1 300 -12 1904 100 89 0 chrX 44667992 44668273 -117931657 + AluSx SINE Alu 1 306 -6 1404 234 138 13 chrX 44668300 44668698 -117931232 - MLT1J2 LTR MaLR -2 448 1 1428 154 70 32 chrX 44668720 44669032 -117930898 + MER33 DNA MER1_type 1 324 0 2423 113 12 12 chrX 44669986 44670323 -117929607 - MER1B DNA MER1_type 0 337 1 259 390 37 5 chrX 44671482 44671672 -117928258 + MIR SINE MIR 58 253 -9 184 299 134 0 chrX 44671688 44671785 -117928145 + MIR SINE MIR 14 123 -139 463 294 5 54 chrX 44673576 44673760 -117926170 + G-rich Low_complexity Low_complexity 3 177 0 610 182 203 14 chrX 44674183 44674331 -117925599 + MER5B DNA MER1_type 3 178 0 518 283 17 11 chrX 44676081 44676258 -117923672 + CT-rich Low_complexity Low_complexity 3 180 0 241 240 15 15 chrX 44676334 44676612 -117923318 + CT-rich Low_complexity Low_complexity 1 278 0 1823 115 21 7 chrX 44676681 44676967 -117922963 - AluJb SINE Alu -22 290 1 380 357 0 27 chrX 44676967 44677152 -117922778 + C-rich Low_complexity Low_complexity 1 180 0 2306 103 0 0 chrX 44677803 44678113 -117921817 - AluSx SINE Alu -2 310 1 365 308 13 6 chrX 44678143 44678299 -117921631 + CT-rich Low_complexity Low_complexity 2 158 0 300 263 38 31 chrX 44678645 44678805 -117921125 + (TCTCTG)n Simple_repeat Simple_repeat 2 162 0 211 238 9 9 chrX 44678818 44678923 -117921007 + CT-rich Low_complexity Low_complexity 2 106 0 295 78 39 0 chrX 44680587 44680638 -117919292 + CT-rich Low_complexity Low_complexity 1 53 0 225 186 0 0 chrX 44680969 44681012 -117918918 - MIR SINE MIR -114 148 106 478 335 0 0 chrX 44681344 44681523 -117918407 + GA-rich Low_complexity Low_complexity 2 180 0 303 273 0 36 chrX 44681532 44681697 -117918233 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 201 277 0 0 chrX 44681992 44682039 -117917891 - MIR3 SINE MIR -53 155 109 * 217 331 41 62 chrX 44682021 44682166 -117917764 + MIR3 SINE MIR 11 152 -56 193 310 56 14 chrX 44682197 44682268 -117917662 - L2 LINE L2 -19 3253 3180 429 325 36 52 chrX 44682291 44682540 -117917390 + MIR SINE MIR 13 257 -5 208 288 31 6 chrX 44682613 44682704 -117917226 + (TAA)n Simple_repeat Simple_repeat 3 101 -68 2272 114 17 11 chrX 44682704 44683064 -117916866 - L1MA6 LINE L1 -4 6296 5935 208 288 31 6 chrX 44683064 44683135 -117916795 + (TAA)n Simple_repeat Simple_repeat 101 169 0 1070 171 29 15 chrX 44683188 44683393 -117916537 - AluJo SINE Alu -23 289 82 213 275 76 76 chrX 44683425 44683556 -117916374 - MIR SINE MIR 0 262 132 322 224 56 65 chrX 44683593 44683700 -117916230 + MIR SINE MIR 40 145 -63 571 137 121 40 chrX 44684735 44684859 -117915071 - L1ME3 LINE L1 -215 5947 5814 3295 151 58 80 chrX 44684870 44685289 -117914641 - L1MB7 LINE L1 -16 6168 5741 1815 128 42 0 chrX 44685289 44685577 -117914353 + AluJo SINE Alu 5 304 -8 3295 151 58 80 chrX 44685577 44685826 -117914104 - L1MB7 LINE L1 -443 5741 5488 968 77 32 0 chrX 44685826 44685981 -117913949 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 1529 174 22 14 chrX 44685988 44686264 -117913666 - AluJb SINE Alu -34 278 1 3295 151 58 80 chrX 44686264 44686407 -117913523 - L1MB7 LINE L1 -702 5482 5366 1809 111 0 0 chrX 44686408 44686660 -117913270 - AluSx SINE Alu -2 310 59 229 290 29 0 chrX 44886894 44886963 -117712967 + CT-rich Low_complexity Low_complexity 3 73 0 208 325 17 103 chrX 44888624 44888741 -117711189 + L2 LINE L2 3164 3270 -2 189 0 0 0 chrX 44888873 44888894 -117711036 + (CTTTG)n Simple_repeat Simple_repeat 2 22 0 180 231 11 165 chrX 44889033 44889124 -117710806 - L2 LINE L2 -24 3248 3172 670 242 13 7 chrX 44889266 44889415 -117710515 - MIR SINE MIR -86 176 27 253 306 64 19 chrX 44890099 44890233 -117709697 + MIR SINE MIR 4 146 -62 515 328 62 31 chrX 44890794 44891151 -117708779 + L2 LINE L2 1635 2002 -1312 5890 124 38 1 chrX 44891200 44892169 -117707761 + L1MA4 LINE L1 5296 6300 0 2183 116 3 0 chrX 44892179 44892473 -117707457 - AluSx SINE Alu -17 295 1 382 348 185 15 chrX 44892483 44892894 -117707036 + L2 LINE L2 2018 2498 -816 240 278 133 0 chrX 44893214 44893304 -117706626 + MIR SINE MIR 148 249 -13 280 315 8 55 chrX 44894244 44894371 -117705559 + L2 LINE L2 2562 2682 -632 2291 104 0 0 chrX 44894784 44895073 -117704857 - AluSx SINE Alu -23 289 1 306 266 93 63 chrX 44895304 44895541 -117704389 + L1 LINE L1 3150 3393 -2753 261 277 69 8 chrX 44895801 44895931 -117703999 + L1 LINE L1 3635 3772 -2374 600 164 79 0 chrX 44895954 44896106 -117703824 - LTR37A LTR ERV1 0 426 263 207 362 27 27 chrX 44896379 44896528 -117703402 + L2 LINE L2 470 618 -2696 1072 118 43 5 chrX 44896537 44896724 -117703206 - L1MA5A LINE L1 -2 6295 6102 313 304 109 0 chrX 44896964 44897056 -117702874 - L2 LINE L2 -24 3248 3147 292 213 107 0 chrX 44897063 44897138 -117702792 - MER58B DNA MER1_type -15 326 244 2306 96 54 0 chrX 44897138 44897491 -117702439 - L1MA5A LINE L1 -257 6040 5669 200 188 0 0 chrX 44897491 44897523 -117702407 + (CATA)n Simple_repeat Simple_repeat 3 34 0 857 180 133 0 chrX 44897523 44897734 -117702196 + MER58B DNA MER1_type 88 326 -15 313 304 109 0 chrX 44897742 44897834 -117702096 + L2 LINE L2 3147 3248 -24 24 0 0 0 chrX 44898318 44898342 -117701588 + AT_rich Low_complexity Low_complexity 1 24 0 846 216 4 122 chrX 44898342 44898596 -117701334 + MER58A DNA MER1_type 1 224 0 402 284 26 26 chrX 44898847 44898963 -117700967 - L2 LINE L2 -1 3271 3156 355 298 36 42 chrX 44898952 44899120 -117700810 + MIR SINE MIR 34 200 -62 * 21 36 0 0 chrX 44899139 44899167 -117700763 + AT_rich Low_complexity Low_complexity 1 28 0 359 217 87 70 chrX 44899171 44899286 -117700644 - L2 LINE L2 -6 3307 3191 2224 55 0 28 chrX 44899423 44899737 -117700193 + AluY SINE Alu 1 306 0 484 319 37 16 chrX 44899963 44900151 -117699779 - MIR3 SINE MIR -1 207 16 218 335 65 49 chrX 44900956 44901201 -117698729 + L2 LINE L2 1540 1788 -1526 1881 210 59 16 chrX 44901238 44901681 -117698249 - MLT1C LTR MaLR 0 467 6 659 319 136 53 chrX 44901686 44902522 -117697408 + L2 LINE L2 1954 2928 -344 3322 55 18 35 chrX 44902522 44902974 -117696956 - MLT2A1 LTR ERVL 0 444 1 659 319 136 53 chrX 44902974 44903351 -117696579 + L2 LINE L2 2928 3272 0 190 217 0 22 chrX 44903464 44903510 -117696420 - L2 LINE L2 -829 2485 2441 223 353 0 0 chrX 44903552 44903620 -117696310 - MIR SINE MIR -1 261 194 483 332 37 21 chrX 44903634 44903875 -117696055 - L2 LINE L2 -946 2368 2124 1778 286 55 65 chrX 44903909 44905069 -117694861 - L2 LINE L2 0 3313 2170 1031 215 6 57 chrX 44905069 44905385 -117694545 + L1MC4 LINE L1 7743 8042 0 1554 222 114 134 chrX 44905505 44905960 -117693970 - L2 LINE L2 -1141 2173 1743 1550 106 13 0 chrX 44905960 44906196 -117693734 + L1MA4 LINE L1 6056 6294 -6 1554 222 114 134 chrX 44906196 44906641 -117693289 - L2 LINE L2 -1571 1743 1291 430 348 36 36 chrX 44906641 44906862 -117693068 - L2 LINE L2 -1285 2029 1809 183 323 113 0 chrX 44906915 44906977 -117692953 + L2 LINE L2 3137 3205 -67 250 291 64 18 chrX 44907940 44908050 -117691880 + L2 LINE L2 3199 3313 0 215 353 41 33 chrX 44909110 44909232 -117690698 + L3b LINE CR1 1106 1228 -355 293 323 108 48 chrX 44909609 44909776 -117690154 + L3b LINE CR1 1272 1448 -135 492 291 71 95 chrX 44909990 44910410 -117689520 + L2 LINE L2 2150 2559 -755 1382 68 4 112 chrX 44910411 44910662 -117689268 - L1PA13 LINE L1 -11 6152 5929 372 344 151 19 chrX 44910675 44910934 -117688996 + L2 LINE L2 2894 3186 -86 2686 225 52 41 chrX 44911012 44912005 -117687925 - L1M4 LINE L1 -999 5541 4538 * 5945 167 43 15 chrX 44911981 44913342 -117686588 - L1MDa LINE L1 -3772 2768 1366 15749 106 17 31 chrX 44913346 44914807 -117685123 + Tigger1 DNA MER2_type 1 1481 -937 6744 56 0 0 chrX 44914807 44915648 -117684282 + L1PA7 LINE L1 5314 6154 0 15749 106 17 31 chrX 44915648 44916157 -117683773 + Tigger1 DNA MER2_type 1481 1933 -485 1760 139 19 4 chrX 44916157 44916424 -117683506 + AluJb SINE Alu 1 271 -41 15749 106 17 31 chrX 44916424 44916904 -117683026 + Tigger1 DNA MER2_type 1933 2418 0 4960 191 103 11 chrX 44916905 44918026 -117681904 - L1MDa LINE L1 -5178 1362 139 397 183 59 0 chrX 44918062 44918164 -117681766 - L1M LINE L1 -844 5302 5213 618 160 38 0 chrX 44918189 44918295 -117681635 - L1MDa LINE L1 -6415 125 16 34 24 0 0 chrX 44918352 44918393 -117681537 + AT_rich Low_complexity Low_complexity 1 41 0 358 280 9 37 chrX 44919568 44919675 -117680255 - MIR SINE MIR -133 129 26 438 281 12 47 chrX 44919962 44920133 -117679797 - MIR SINE MIR -21 241 77 347 17 67 0 chrX 44920803 44920863 -117679067 + (TG)n Simple_repeat Simple_repeat 2 65 0 199 208 19 38 chrX 44921796 44921849 -117678081 - L2 LINE L2 -1 3312 3261 183 241 35 52 chrX 44922194 44922252 -117677678 - L2 LINE L2 -541 2773 2717 215 249 171 69 chrX 44922720 44922937 -117676993 + L2 LINE L2 1686 1924 -1390 427 238 232 0 chrX 44923022 44923173 -117676757 + MIR SINE MIR 71 256 -6 2214 106 0 7 chrX 44923245 44923538 -117676392 - AluSg SINE Alu -18 292 2 557 249 158 18 chrX 44923628 44923793 -117676137 - MER5A DNA MER1_type 0 189 2 325 281 85 55 chrX 44923803 44924002 -117675928 + L2 LINE L2 2160 2364 -950 1884 120 74 0 chrX 44924260 44924543 -117675387 + AluSx SINE Alu 1 304 -8 455 292 77 44 chrX 44924568 44924842 -117675088 + L1MC4a LINE L1 5114 5396 -750 1616 179 7 11 chrX 44924846 44925125 -117674805 + AluJo SINE Alu 6 283 -29 658 99 36 0 chrX 44925133 44925244 -117674686 + GA-rich Low_complexity Low_complexity 3 117 0 270 263 53 59 chrX 44925246 44925398 -117674532 + L1MC4a LINE L1 5386 5536 -2272 545 149 113 13 chrX 44925399 44925513 -117674417 + MER5A DNA MER1_type 9 116 -62 629 318 82 16 chrX 44925548 44925926 -117674004 + L1MC4a LINE L1 5522 5924 -1884 651 215 76 0 chrX 44925931 44926075 -117673855 - MIR SINE MIR -106 156 2 291 325 146 35 chrX 44927099 44927468 -117672462 - L2 LINE L2 -474 2840 2431 1523 161 14 135 chrX 44927504 44927919 -117672011 - MLT1A1 LTR MaLR 0 365 1 8643 145 21 15 chrX 44928169 44930105 -117669825 + L1MA9 LINE L1 3818 5768 -523 206 94 47 35 chrX 44930179 44930264 -117669666 + (TA)n Simple_repeat Simple_repeat 1 86 0 1040 100 59 0 chrX 44930269 44930439 -117669491 + L1MA9 LINE L1 5783 5962 -329 3498 114 17 17 chrX 44930439 44930970 -117668960 + L1PA16 LINE L1 5625 6157 -9 26 0 0 0 chrX 44930970 44930996 -117668934 + AT_rich Low_complexity Low_complexity 1 26 0 1841 148 45 11 chrX 44930998 44931355 -117668575 + L1MA9 LINE L1 5937 6305 -7 824 161 86 11 chrX 44931782 44931826 -117668104 - MER5A DNA MER1_type -1 188 149 11946 74 14 0 chrX 44931826 44934175 -117665755 + L1PA7 LINE L1 3784 6154 0 824 161 86 11 chrX 44934175 44934304 -117665626 - MER5A DNA MER1_type -40 149 2 195 69 0 0 chrX 44934645 44934674 -117665256 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2148 97 3 33 chrX 44935100 44935399 -117664531 + AluSc SINE Alu 1 290 -19 1063 263 54 48 chrX 44935401 44935918 -117664012 - L1ME4a LINE L1 -3 6118 5599 596 129 11 0 chrX 44935916 44936009 -117663921 - L1MB7 LINE L1 -23 6161 6068 * 556 176 49 0 chrX 44936017 44936119 -117663811 - U6 snRNA snRNA 0 107 1 347 283 127 12 chrX 44936120 44936286 -117663644 - L1ME4a LINE L1 -507 5614 5430 864 301 73 15 chrX 44937477 44937885 -117662045 + L2 LINE L2 2472 2903 -411 450 0 0 0 chrX 44939180 44939230 -117660700 + (CA)n Simple_repeat Simple_repeat 2 51 0 372 254 261 0 chrX 44940526 44940664 -117659266 + MER5A DNA MER1_type 9 182 -7 189 170 21 64 chrX 44940812 44940859 -117659071 - L2 LINE L2 -12 3301 3257 * 367 209 116 0 chrX 44940854 44940940 -117658990 - MIR SINE MIR -67 141 46 374 269 30 16 chrX 44941356 44941507 -117658423 - MIR3 SINE MIR -10 198 45 684 255 35 20 chrX 44942883 44942993 -117656937 + MIR SINE MIR 48 164 -98 1863 151 0 41 chrX 44942993 44943310 -117656620 + AluJo SINE Alu 1 304 -8 684 255 35 20 chrX 44943310 44943399 -117656531 + MIR SINE MIR 164 250 -12 316 327 46 13 chrX 44943427 44943580 -117656350 - MIR SINE MIR -27 235 78 2284 101 3 3 chrX 44943846 44944144 -117655786 + AluSx SINE Alu 1 298 -14 528 291 81 5 chrX 44944281 44944491 -117655439 - MIR SINE MIR -1 261 36 382 255 41 0 chrX 44944624 44944722 -117655208 - L2 LINE L2 -226 3046 2945 711 238 72 5 chrX 44944753 44944946 -117654984 - MIR SINE MIR -34 228 23 196 291 73 0 chrX 44945533 44945588 -117654342 + L2 LINE L2 3189 3247 -25 187 341 68 0 chrX 44946134 44946222 -117653708 + L2 LINE L2 3201 3294 -19 289 251 0 73 chrX 44946296 44946487 -117653443 + CT-rich Low_complexity Low_complexity 1 177 0 410 328 54 39 chrX 44946797 44947001 -117652929 + L2 LINE L2 3063 3269 -3 443 211 119 0 chrX 44947157 44947266 -117652664 - L2 LINE L2 0 3313 3192 244 244 39 13 chrX 44947703 44947781 -117652149 + MIR SINE MIR 34 113 -95 564 261 67 10 chrX 44947791 44947986 -117651944 + L2 LINE L2 1993 2198 -1116 365 256 17 0 chrX 44948788 44948905 -117651025 - MIR SINE MIR -12 250 132 307 281 41 8 chrX 44948925 44949046 -117650884 + MIR SINE MIR 29 153 -109 1323 156 0 0 chrX 44949052 44949263 -117650667 + L1PA16 LINE L1 5956 6166 0 194 225 0 0 chrX 44949294 44949334 -117650596 + L2 LINE L2 3214 3253 -19 218 287 11 144 chrX 44949368 44949472 -117650458 + MIR3 SINE MIR 43 115 -93 797 184 60 38 chrX 44949472 44949657 -117650273 + MER5A DNA MER1_type 1 189 0 218 287 11 144 chrX 44949657 44949733 -117650197 + MIR3 SINE MIR 115 199 -9 24 32 0 0 chrX 44952641 44952672 -117647258 + AT_rich Low_complexity Low_complexity 1 31 0 222 328 35 9 chrX 44952944 44953060 -117646870 + MIR SINE MIR 117 235 -27 845 197 43 107 chrX 44953486 44953786 -117646144 + L1ME2 LINE L1 5874 6154 -10 308 125 18 0 chrX 44953865 44953921 -117646009 - L1M4 LINE L1 -1685 4461 4405 3940 207 60 30 chrX 44953958 44954997 -117644933 - L1M4 LINE L1 -1721 4425 3356 358 185 64 32 chrX 44955045 44955191 -117644739 + L1MC4 LINE L1 7783 8037 -5 549 257 180 14 chrX 44955199 44955421 -117644509 + MIR SINE MIR 3 261 -1 397 212 116 48 chrX 44956030 44956176 -117643754 - MIR SINE MIR -54 208 53 673 297 88 0 chrX 44956183 44956422 -117643508 - MIR SINE MIR -1 261 2 187 194 0 0 chrX 44956926 44956962 -117642968 - L2 LINE L2 -27 3245 3210 277 333 53 0 chrX 44958367 44958481 -117641449 + L2 LINE L2 3181 3300 -13 605 279 88 9 chrX 44958545 44958760 -117641170 - MIR SINE MIR 0 262 31 221 203 0 34 chrX 44959011 44959070 -117640860 - MIR SINE MIR -57 205 149 412 169 39 130 chrX 44959106 44959260 -117640670 - MER5A DNA MER1_type -48 141 2 265 279 0 0 chrX 44959282 44959350 -117640580 - MIR SINE MIR -147 115 48 733 212 36 84 chrX 44959565 44959815 -117640115 + MIR SINE MIR 15 252 -10 916 281 103 48 chrX 44960167 44960894 -117639036 - L1ME4a LINE L1 -28 6093 5327 1081 171 0 11 chrX 44960976 44961152 -117638778 + FRAM SINE Alu 1 171 -5 3137 173 50 8 chrX 44961605 44962208 -117637722 - L1MB8 LINE L1 -37 6141 5514 2295 105 0 0 chrX 44962270 44962566 -117637364 + AluSx SINE Alu 1 296 -16 1136 132 22 0 chrX 44962662 44962844 -117637086 + MER5A DNA MER1_type 2 187 -2 337 245 41 0 chrX 44963460 44963558 -117636372 - MIR SINE MIR -56 206 105 677 246 22 11 chrX 44963587 44963766 -117636164 - MIR SINE MIR -1 261 81 599 281 62 44 chrX 44964079 44964644 -117635286 + L1ME LINE L1 4408 4982 -1164 21 0 0 0 chrX 44964859 44964880 -117635050 + AT_rich Low_complexity Low_complexity 1 21 0 332 296 75 86 chrX 44964913 44965193 -117634737 + L1ME LINE L1 5320 5596 -525 347 293 195 11 chrX 44966885 44967059 -117632871 + MIR SINE MIR 31 236 -26 1696 131 104 0 chrX 44967070 44967330 -117632600 + AluSx SINE Alu 1 287 -25 1314 69 0 0 chrX 44967331 44967505 -117632425 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 280 210 97 153 chrX 44968547 44968671 -117631259 - MIR3 SINE MIR -80 128 12 505 338 6 6 chrX 44968987 44969147 -117630783 + MER5A DNA MER1_type 6 165 -24 250 204 84 108 chrX 44969183 44969350 -117630580 - Charlie7 DNA MER1_type -1 2611 2449 665 283 137 54 chrX 44970126 44970441 -117629489 - L2 LINE L2 0 3272 2932 297 0 0 0 chrX 44970626 44970659 -117629271 + (CA)n Simple_repeat Simple_repeat 2 34 0 2473 276 100 44 chrX 44970701 44972344 -117627586 - L1ME4a LINE L1 -107 6014 4464 1902 151 21 0 chrX 44972344 44972629 -117627301 + AluSx SINE Alu 1 291 -21 2473 276 100 44 chrX 44972629 44973810 -117626120 - L1ME4a LINE L1 -1657 4464 2993 2053 126 0 26 chrX 44973810 44974120 -117625810 - AluSx SINE Alu -10 302 1 2473 276 100 44 chrX 44974120 44974342 -117625588 - L1ME4a LINE L1 -3128 2993 2785 2234 40 0 7 chrX 44974348 44974621 -117625309 + AluY SINE Alu 41 311 0 689 200 135 69 chrX 44975068 44975328 -117624602 - L2 LINE L2 0 3313 3037 288 0 0 0 chrX 44975373 44975405 -117624525 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chrX 44975404 44975424 -117624506 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 216 143 54 0 chrX 44976000 44976056 -117623874 + (TA)n Simple_repeat Simple_repeat 2 60 0 243 0 0 0 chrX 44976065 44976092 -117623838 + (CA)n Simple_repeat Simple_repeat 2 28 0 1633 175 38 34 chrX 44976485 44976777 -117623153 - AluJb SINE Alu -19 293 1 1182 234 4 0 chrX 44977188 44977415 -117622515 + MIR SINE MIR 27 254 -8 191 59 0 59 chrX 44977416 44977450 -117622480 + (TTA)n Simple_repeat Simple_repeat 1 32 0 243 103 0 0 chrX 44977970 44978009 -117621921 + (CAG)n Simple_repeat Simple_repeat 1 39 0 * 525 121 0 0 chrX 44978007 44978090 -117621840 + (GGA)n Simple_repeat Simple_repeat 3 85 0 731 299 30 17 chrX 44978400 44978631 -117621299 + MIR SINE MIR 28 261 -1 1432 25 0 0 chrX 44979519 44979677 -117620253 + L1PA2 LINE L1 5998 6155 0 591 197 262 6 chrX 44979877 44980060 -117619870 - MIR SINE MIR -10 252 23 625 246 16 27 chrX 44980402 44980585 -117619345 - MIR SINE MIR -3 259 79 605 269 7 0 chrX 44981303 44981444 -117618486 + MIR SINE MIR 2 143 -119 2577 67 0 3 chrX 44983366 44983680 -117616250 + AluSq SINE Alu 1 313 0 207 256 215 33 chrX 44983680 44983791 -117616139 - MIR SINE MIR -86 176 40 1075 225 8 46 chrX 44985173 44985435 -117614495 - MIR SINE MIR -10 252 1 404 290 122 36 chrX 44985540 44985761 -117614169 - MIR SINE MIR 0 262 23 711 296 69 4 chrX 44986194 44986427 -117613503 - MIR SINE MIR 0 262 15 1676 157 61 4 chrX 44986610 44986722 -117613208 + AluSx SINE Alu 1 105 -207 318 26 0 0 chrX 44986722 44986761 -117613169 + (CA)n Simple_repeat Simple_repeat 2 40 0 1676 157 61 4 chrX 44986761 44986928 -117613002 + AluSx SINE Alu 105 296 -16 1949 166 0 0 chrX 44987623 44987931 -117611999 + AluJb SINE Alu 5 312 0 881 279 39 0 chrX 44987931 44988160 -117611770 + MIR SINE MIR 19 256 -6 252 200 0 0 chrX 44988362 44988427 -117611503 + (CA)n Simple_repeat Simple_repeat 2 66 0 22 70 0 0 chrX 44989925 44989968 -117609962 + AT_rich Low_complexity Low_complexity 1 43 0 397 303 91 6 chrX 44993224 44993389 -117606541 + MIR SINE MIR 2 180 -82 250 285 260 8 chrX 44993411 44993534 -117606396 + MER5A DNA MER1_type 36 189 0 4906 177 62 14 chrX 44993657 44993741 -117606189 + L1MB7 LINE L1 4277 4356 -1828 2195 102 0 0 chrX 44993741 44994088 -117605842 + AluY SINE Alu 1 347 0 4906 177 62 14 chrX 44994088 44995005 -117604925 + L1MB7 LINE L1 4356 5228 -956 1830 196 24 47 chrX 44995005 44995208 -117604722 - MLT1A2 LTR MaLR 0 374 183 2307 67 0 14 chrX 44995208 44995505 -117604425 + AluY SINE Alu 1 293 -18 1830 196 24 47 chrX 44995505 44995684 -117604246 - MLT1A2 LTR MaLR -191 183 1 4906 177 62 14 chrX 44995684 44996484 -117603446 + L1MB7 LINE L1 5228 6184 0 796 320 19 4 chrX 44996754 44997010 -117602920 + MIR SINE MIR 1 260 -2 189 184 265 0 chrX 44997086 44997135 -117602795 + MIR SINE MIR 63 124 -84 718 267 111 5 chrX 44997179 44997396 -117602534 + MIR SINE MIR 23 262 0 452 255 121 25 chrX 44997998 44998155 -117601775 - L2 LINE L2 0 3313 3142 1503 158 12 0 chrX 44998300 44998547 -117601383 - L1M2 LINE L1 -597 5715 5466 * 2004 158 114 0 chrX 44998541 44998945 -117600985 + L1MA9 LINE L1 5825 6274 -38 238 293 135 61 chrX 45000204 45000461 -117599469 + L2 LINE L2 2779 3042 -271 353 270 143 32 chrX 45000498 45000624 -117599306 + L2 LINE L2 3114 3253 -19 935 336 121 27 chrX 45000680 45001350 -117598580 + L2 LINE L2 2079 2811 -503 277 224 1 69 chrX 45001480 45001567 -117598363 - MLT1I LTR MaLR 0 567 309 2600 184 34 91 chrX 45001775 45002394 -117597536 - MLT1E LTR MaLR 0 593 10 245 186 0 51 chrX 45002394 45002453 -117597477 - MLT1I LTR MaLR -263 146 91 261 298 76 69 chrX 45003177 45003308 -117596622 - L2 LINE L2 -214 3058 2927 1123 193 85 22 chrX 45003366 45003806 -117596124 - MLT1E LTR MaLR -31 562 1 2694 163 65 12 chrX 45003881 45004361 -117595569 + LTR22 LTR ERVK 1 505 -4 210 308 0 31 chrX 45004650 45004715 -117595215 + L2 LINE L2 3134 3196 -76 232 232 0 18 chrX 45004884 45004940 -117594990 + L1ME LINE L1 5710 5764 -357 201 39 0 0 chrX 45004944 45004970 -117594960 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 868 186 7 7 chrX 45004970 45005115 -117594815 - FRAM SINE Alu -31 145 1 979 212 11 0 chrX 45005371 45005555 -117594375 + MER5A DNA MER1_type 1 186 -3 301 283 64 96 chrX 45005909 45006223 -117593707 + L2 LINE L2 100 403 -2911 1035 105 0 0 chrX 45007018 45007151 -117592779 + AluSq/x SINE Alu 1 133 -180 2198 94 3 0 chrX 45007153 45007439 -117592491 + AluY SINE Alu 1 287 -24 34 0 0 0 chrX 45007439 45007473 -117592457 + AT_rich Low_complexity Low_complexity 1 34 0 424 226 89 42 chrX 45007473 45007641 -117592289 - HAL1 LINE L1 -906 1601 1426 272 340 49 32 chrX 45008172 45008357 -117591573 + L2 LINE L2 1176 1363 -1951 2625 189 78 5 chrX 45008521 45009123 -117590807 + L1MC3 LINE L1 1582 2349 -4033 264 30 0 0 chrX 45009123 45009156 -117590774 + (CA)n Simple_repeat Simple_repeat 2 34 0 2625 189 78 5 chrX 45009156 45009211 -117590719 + L1MC3 LINE L1 2349 2399 -3983 1893 301 41 16 chrX 45009213 45009794 -117590136 + L1MDb LINE L1 8 603 -5806 364 181 164 26 chrX 45009890 45010006 -117589924 + L1MB8 LINE L1 6038 6169 -9 9362 173 71 56 chrX 45010010 45013115 -117586815 + L1MC3 LINE L1 4186 7429 -592 271 302 35 0 chrX 45013115 45013201 -117586729 + MLT1F1 LTR MaLR 35 123 -444 9362 173 71 56 chrX 45013201 45013410 -117586520 + L1MC3 LINE L1 7429 7633 -388 2480 76 0 0 chrX 45013410 45013713 -117586217 + AluY SINE Alu 1 303 -8 843 169 43 33 chrX 45013713 45013868 -117586062 + L1ME LINE L1 5428 5587 -579 3182 53 0 0 chrX 45013868 45014262 -117585668 - L1PA7 LINE L1 -2 6152 5759 410 279 14 20 chrX 45014341 45014488 -117585442 + L2 LINE L2 2118 2263 -1051 711 208 0 8 chrX 45014497 45014627 -117585303 + MER45A DNA AcHobo 1 129 -49 28 29 0 0 chrX 45014658 45014693 -117585237 + AT_rich Low_complexity Low_complexity 1 35 0 554 112 0 11 chrX 45014693 45014782 -117585148 - L1P LINE L1 -1136 5010 4923 186 281 16 16 chrX 45014888 45014952 -117584978 - MER5A DNA MER1_type -91 98 35 * 201 219 24 0 chrX 45014923 45014964 -117584966 + MER5A DNA MER1_type 137 178 -11 2089 169 78 30 chrX 45015824 45016297 -117583633 - L1MD2 LINE L1 -3 6356 5861 2822 219 73 21 chrX 45016299 45017028 -117582902 - L1MDb LINE L1 -5185 1224 458 368 238 0 48 chrX 45017073 45017157 -117582773 - L1MDb LINE L1 -6320 89 10 550 128 0 68 chrX 45017481 45017614 -117582316 + L1MB2 LINE L1 6048 6171 0 186 298 0 0 chrX 45017963 45018010 -117581920 + L2 LINE L2 3218 3264 -8 505 284 19 60 chrX 45018122 45018337 -117581593 - MIR SINE MIR -25 237 32 279 352 70 0 chrX 45018716 45018844 -117581086 + L2 LINE L2 3172 3308 -5 265 254 8 45 chrX 45018864 45018998 -117580932 + MER113 DNA MER1_type? 2 130 -391 250 277 15 0 chrX 45019108 45019173 -117580757 + MER113 DNA MER1_type? 456 521 0 460 221 200 0 chrX 45019223 45019368 -117580562 - MER5B DNA MER1_type -4 174 1 651 233 146 32 chrX 45020058 45020277 -117579653 - MIR SINE MIR -3 259 16 287 289 0 12 chrX 45020297 45020380 -117579550 - MIR3 SINE MIR -23 185 104 1226 239 173 31 chrX 45020415 45020893 -117579037 - L2 LINE L2 -3 3310 2765 613 198 161 6 chrX 45021333 45021495 -117578435 + MER5A DNA MER1_type 1 187 -2 14981 198 52 14 chrX 45021549 45021608 -117578322 - L1PB1 LINE L1 -1 6866 6811 2277 101 0 19 chrX 45021608 45021924 -117578006 - AluSx SINE Alu -2 310 1 14981 198 52 14 chrX 45021924 45028511 -117571419 - L1PB1 LINE L1 -56 6811 6 982 211 81 63 chrX 45028526 45028628 -117571302 - L2 LINE L2 -521 2793 2694 2370 85 0 0 chrX 45028628 45028922 -117571008 + AluSc SINE Alu 1 294 -15 982 211 81 63 chrX 45028922 45029138 -117570792 - L2 LINE L2 -620 2694 2466 2268 113 0 0 chrX 45029138 45029438 -117570492 + AluY SINE Alu 1 300 -11 982 211 81 63 chrX 45029438 45029450 -117570480 - L2 LINE L2 -848 2466 2456 386 281 106 19 chrX 45030785 45030945 -117568985 - MIR SINE MIR -43 219 46 756 233 161 9 chrX 45031123 45031346 -117568584 + MIR SINE MIR 6 262 0 228 220 17 17 chrX 45031540 45031599 -117568331 + L2 LINE L2 3214 3272 0 261 316 20 0 chrX 45031959 45032057 -117567873 + L2 LINE L2 2140 2239 -1075 232 111 0 0 chrX 45032059 45032095 -117567835 + MER63 DNA MER1_type 4 39 -891 356 125 31 94 chrX 45032095 45032212 -117567718 - L1M4 LINE L1 -407 5755 5647 559 313 111 16 chrX 45032214 45032457 -117567473 + L2 LINE L2 3007 3272 0 1497 238 45 55 chrX 45033421 45033769 -117566161 + L1ME3A LINE L1 5624 5967 -203 1811 171 3 0 chrX 45033769 45034062 -117565868 + AluJo SINE Alu 5 298 -14 1497 238 45 55 chrX 45034062 45034243 -117565687 + L1ME3A LINE L1 5967 6148 -22 578 298 57 36 chrX 45034281 45034529 -117565401 + MIR SINE MIR 8 260 -2 911 226 40 33 chrX 45034531 45034805 -117565125 - L1MCb LINE L1 -5364 681 406 982 162 94 27 chrX 45034808 45035071 -117564859 + MLT1B LTR MaLR 5 226 -164 1800 234 96 9 chrX 45035071 45035635 -117564295 + L1MD3 LINE L1 5391 6003 -1992 * 2574 156 24 28 chrX 45035168 45035669 -117564261 + L1MB8 LINE L1 5530 6028 -150 543 228 16 0 chrX 45035698 45035825 -117564105 - L1MD3 LINE L1 -34 7961 7833 2507 204 28 15 chrX 45035827 45036366 -117563564 - L1MD2 LINE L1 -216 6143 5598 2081 67 21 0 chrX 45036381 45036666 -117563264 + L1PA14 LINE L1 5869 6159 -2 6380 198 53 17 chrX 45036678 45038635 -117561295 - L1MDa LINE L1 -3580 2960 933 300 276 0 66 chrX 45038670 45038746 -117561184 - L1MDa LINE L1 -6343 197 127 1086 227 59 0 chrX 45038753 45038991 -117560939 - L1MDa LINE L1 -5452 1088 837 575 273 12 12 chrX 45038997 45039162 -117560768 - L1MDa LINE L1 -6357 183 19 591 174 14 14 chrX 45039172 45039316 -117560614 + L1MB8 LINE L1 6033 6176 -2 2186 116 0 17 chrX 45039350 45039652 -117560278 + AluSx SINE Alu 1 297 -15 371 377 52 5 chrX 45039846 45040037 -117559893 - MIR SINE MIR -6 256 57 255 346 108 49 chrX 45040055 45040240 -117559690 + L2 LINE L2 3077 3272 0 8864 224 44 39 chrX 45040370 45043073 -117556857 - L1M4 LINE L1 -886 5260 2542 332 264 16 16 chrX 45243073 45243198 -117356732 + L1M4b LINE L1 2266 2390 -4569 2332 102 3 6 chrX 45243267 45243581 -117356349 + AluSp SINE Alu 1 313 0 2303 106 3 0 chrX 45243615 45243918 -117356012 + AluSx SINE Alu 1 304 -8 26 30 0 0 chrX 45244164 45244197 -117355733 + AT_rich Low_complexity Low_complexity 1 33 0 2970 281 79 47 chrX 45244198 45245499 -117354431 + L1M4 LINE L1 3 1345 -5514 7628 219 33 32 chrX 45245502 45246416 -117353514 + L1M4 LINE L1 3895 4806 -2189 1599 209 70 11 chrX 45246416 45246790 -117353140 + MSTD LTR MaLR 1 396 0 7628 219 33 32 chrX 45246790 45247485 -117352445 + L1M4 LINE L1 4806 5499 -1496 2173 108 15 80 chrX 45247485 45247525 -117352405 + THE1B LTR MaLR 1 42 -322 2342 106 0 3 chrX 45247525 45247836 -117352094 - AluSx SINE Alu -2 310 1 2173 108 15 80 chrX 45247836 45248184 -117351746 + THE1B LTR MaLR 42 364 0 7628 219 33 32 chrX 45248184 45248847 -117351083 + L1M4 LINE L1 5499 6178 -817 2235 108 7 3 chrX 45248847 45249153 -117350777 + AluSg SINE Alu 1 307 -3 7628 219 33 32 chrX 45249153 45249367 -117350563 + L1M4 LINE L1 6178 6390 -605 4659 78 24 0 chrX 45249371 45249995 -117349935 - L1PA10 LINE L1 -4 6164 5526 2128 244 48 33 chrX 45250139 45250724 -117349206 + L1M4b LINE L1 2625 3208 -3749 16338 36 5 0 chrX 45250724 45253460 -117346470 + L1PA4 LINE L1 3414 6152 -3 2128 244 48 33 chrX 45253460 45253951 -117345979 + L1M4b LINE L1 3208 3690 -3267 1917 178 40 0 chrX 45253947 45254323 -117345607 - L1 LINE L1 -1015 5131 4741 * 1442 139 80 51 chrX 45254319 45254694 -117345236 + L1MA7 LINE L1 5903 6288 -3 * 26 0 0 0 chrX 45254694 45254720 -117345210 + AT_rich Low_complexity Low_complexity 1 26 0 675 120 10 0 chrX 45254723 45254845 -117345085 - L1ME LINE L1 -704 5466 5343 456 249 101 29 chrX 45254836 45255045 -117344885 - L1 LINE L1 -2110 4036 3813 * 4819 176 42 17 chrX 45255326 45256228 -117343702 - L1MC3 LINE L1 0 7785 6850 261 0 0 0 chrX 45256228 45256257 -117343673 + (TG)n Simple_repeat Simple_repeat 1 29 0 4819 176 42 17 chrX 45256257 45256432 -117343498 - L1MC3 LINE L1 -935 6850 6681 2020 256 92 65 chrX 45256502 45256570 -117343360 - L1M4c LINE L1 -4571 2388 2323 1862 157 13 16 chrX 45256570 45256876 -117343054 - AluJo SINE Alu -5 307 3 2020 256 92 65 chrX 45256876 45259108 -117340822 - L1M4c LINE L1 -4636 2323 25 215 281 53 0 chrX 45259130 45259187 -117340743 - L2 LINE L2 -5 3308 3249 455 288 50 14 chrX 45259206 45259425 -117340505 - L1ME1 LINE L1 -5 6161 5935 581 315 50 17 chrX 45260054 45260295 -117339635 - MIR SINE MIR -13 249 1 245 278 167 16 chrX 45260965 45261091 -117338839 - MIR SINE MIR -22 240 96 230 242 87 155 chrX 45261314 45261624 -117338306 + L3 LINE CR1 1104 1392 -185 1913 162 0 3 chrX 45262051 45262359 -117337571 + AluJb SINE Alu 2 308 -4 567 329 55 71 chrX 45262463 45262843 -117337087 - L2 LINE L2 -2 3270 2897 2251 86 0 7 chrX 45263392 45263683 -117336247 - AluSx SINE Alu -23 289 1 353 282 135 18 chrX 45264917 45265080 -117334850 + MIR SINE MIR 3 184 -78 1288 168 19 29 chrX 45266625 45266935 -117332995 + MER33 DNA MER1_type 1 307 -17 432 243 133 75 chrX 45267018 45267191 -117332739 + MIR SINE MIR 77 259 -3 441 225 92 33 chrX 45267428 45267548 -117332382 - L2 LINE L2 0 3313 3187 410 310 193 5 chrX 45268001 45268198 -117331732 + MIR SINE MIR 23 256 -6 392 265 81 44 chrX 45268323 45268459 -117331471 - MER63 DNA MER1_type -294 768 2 220 302 0 0 chrX 45268676 45268729 -117331201 + L2 LINE L2 3219 3271 -1 6340 221 68 74 chrX 45269106 45270662 -117329268 - L1MB7 LINE L1 -9 6244 4680 2365 91 0 0 chrX 45270662 45270959 -117328971 + AluSx SINE Alu 1 297 -15 6340 221 68 74 chrX 45270959 45272190 -117327740 - L1MB7 LINE L1 -1573 4680 3443 1801 176 5 57 chrX 45272190 45272594 -117327336 + MLT1B LTR MaLR 1 383 -7 6340 221 68 74 chrX 45272594 45273454 -117326476 - L1MB7 LINE L1 -2810 3443 2493 1664 171 20 40 chrX 45273454 45273758 -117326172 - AluJo SINE Alu -13 299 2 6340 221 68 74 chrX 45273758 45274142 -117325788 - L1MB7 LINE L1 -3760 2493 2108 2275 109 12 0 chrX 45274157 45274486 -117325444 - L1PA14 LINE L1 -2 6159 5827 1526 98 6 66 chrX 45274486 45274690 -117325240 - L1M3 LINE L1 -603 5558 5370 2339 89 7 0 chrX 45274690 45274982 -117324948 - AluSx SINE Alu -18 294 1 1526 98 6 66 chrX 45274982 45275083 -117324847 - L1M3 LINE L1 -791 5370 5265 405 289 58 50 chrX 45275072 45275432 -117324498 - L1MEc LINE L1 -4320 2076 1714 * 2512 271 92 50 chrX 45275426 45277863 -117322067 - L1M4c LINE L1 -4436 2702 11 2623 113 3 3 chrX 45277928 45278292 -117321638 - THE1B LTR MaLR 0 364 1 299 291 154 0 chrX 45279115 45279232 -117320698 + L2 LINE L2 3138 3272 0 312 298 60 68 chrX 45279604 45279970 -117319960 + L1ME LINE L1 4908 5270 -876 530 315 89 14 chrX 45280087 45280446 -117319484 + L1ME LINE L1 5420 5805 -316 340 226 22 15 chrX 45282250 45282387 -117317543 + GA-rich Low_complexity Low_complexity 3 140 0 560 282 108 47 chrX 45284822 45285130 -117314800 + L1ME4a LINE L1 5614 5961 -160 279 0 0 0 chrX 45285130 45285161 -117314769 + (TG)n Simple_repeat Simple_repeat 2 32 0 560 282 108 47 chrX 45285161 45285316 -117314614 + L1ME4a LINE L1 5961 6105 -16 809 227 82 28 chrX 45285383 45285629 -117314301 - MIR SINE MIR 0 262 9 279 273 193 0 chrX 45285899 45285987 -117313943 - L2 LINE L2 0 3272 3168 279 236 18 0 chrX 45286191 45286246 -117313684 - L2 LINE L2 -8 3264 3209 205 237 72 72 chrX 45286299 45286396 -117313534 - MIR SINE MIR 0 262 166 253 312 203 14 chrX 45286796 45286934 -117312996 - MIR SINE MIR -76 186 23 331 302 50 60 chrX 45289028 45289210 -117310720 - MIR SINE MIR -63 199 20 431 290 120 14 chrX 45289473 45289690 -117310240 - MIR SINE MIR 0 262 23 2183 111 10 3 chrX 45289801 45290108 -117309822 - AluJb SINE Alu -3 309 1 541 234 36 55 chrX 45290499 45290773 -117309157 + L1ME4a LINE L1 5652 5920 -201 188 314 0 23 chrX 45290928 45291014 -117308916 + MIR SINE MIR 129 212 -50 188 370 110 23 chrX 45291134 45291307 -117308623 + L2 LINE L2 2560 2747 -567 488 209 209 0 chrX 45291499 45291646 -117308284 + MER5A DNA MER1_type 6 188 -1 951 248 24 16 chrX 45291909 45292163 -117307767 + MIR SINE MIR 5 260 -2 488 373 72 0 chrX 45293568 45293721 -117306209 + MER91A DNA MER1_type 33 196 0 3246 143 19 19 chrX 45293924 45294440 -117305490 - MLT2B1 LTR ERVL -4 516 1 240 259 49 37 chrX 45294918 45294999 -117304931 + L3 LINE CR1 1043 1124 -453 2195 119 3 0 chrX 45295048 45295341 -117304589 + AluSx SINE Alu 1 294 -18 504 250 8 8 chrX 45295571 45295699 -117304231 - MIR SINE MIR -34 228 101 2776 135 2 38 chrX 45295699 45296151 -117303779 + L1MB1 LINE L1 5730 6165 -3 22 0 0 0 chrX 45296155 45296177 -117303753 + AT_rich Low_complexity Low_complexity 1 22 0 4464 199 34 84 chrX 45296229 45296700 -117303230 + L1ME1 LINE L1 4171 4664 -1502 2324 104 0 0 chrX 45296700 45296997 -117302933 - AluSx SINE Alu -15 297 1 4464 199 34 84 chrX 45296997 45297260 -117302670 + L1ME1 LINE L1 4664 4939 -1227 1540 173 3 89 chrX 45297260 45297584 -117302346 - AluJo SINE Alu -16 296 1 4464 199 34 84 chrX 45297584 45298961 -117300969 + L1ME1 LINE L1 4939 6162 -4 13121 214 72 32 chrX 45299050 45300056 -117299874 + L1MB1 LINE L1 1 965 -5027 1972 145 3 10 chrX 45300056 45300366 -117299564 + AluJo SINE Alu 1 308 -4 13121 214 72 32 chrX 45300366 45301541 -117298389 + L1MB1 LINE L1 965 2092 -3900 1737 34 0 10 chrX 45301541 45301747 -117298183 + AluY SINE Alu 96 299 -12 13121 214 72 32 chrX 45301747 45302950 -117296980 + L1MB1 LINE L1 2092 3246 -2746 2321 154 9 0 chrX 45302950 45303295 -117296635 - MER7A DNA MER2_type 0 346 1 13121 214 72 32 chrX 45303295 45304543 -117295387 + L1MB1 LINE L1 3246 4443 -1549 1559 183 0 36 chrX 45304543 45304817 -117295113 - AluJb SINE Alu -20 292 29 13121 214 72 32 chrX 45304817 45305338 -117294592 + L1MB1 LINE L1 4443 4942 -1050 2274 107 0 23 chrX 45305338 45305647 -117294283 + AluSx SINE Alu 1 302 -10 13121 214 72 32 chrX 45305647 45306580 -117293350 + L1MB1 LINE L1 4942 5992 0 342 45 0 0 chrX 45307747 45307791 -117292139 + (CA)n Simple_repeat Simple_repeat 2 45 0 414 204 0 0 chrX 45307992 45308095 -117291835 + (TA)n Simple_repeat Simple_repeat 1 103 0 937 17 0 63 chrX 45308129 45308304 -117291626 + (TA)n Simple_repeat Simple_repeat 1 164 0 934 242 62 12 chrX 45308819 45309063 -117290867 + MIR SINE MIR 4 259 -3 375 295 23 58 chrX 45309267 45309440 -117290490 + L3 LINE CR1 1395 1561 -16 231 284 0 74 chrX 45309678 45309759 -117290171 - MIR3 SINE MIR -36 172 98 229 329 12 12 chrX 45310141 45310223 -117289707 + GA-rich Low_complexity Low_complexity 3 84 0 576 261 144 33 chrX 45310431 45310821 -117289109 + L1MC4a LINE L1 5789 6221 -1587 205 167 28 0 chrX 45311148 45311184 -117288746 + GA-rich Low_complexity Low_complexity 2 38 0 442 290 35 14 chrX 45311322 45311467 -117288463 + MIR SINE MIR 20 167 -95 586 298 34 24 chrX 45311666 45311874 -117288056 + MIR SINE MIR 9 218 -44 437 148 12 0 chrX 45314332 45314413 -117285517 + GA-rich Low_complexity Low_complexity 1 82 0 351 207 0 0 chrX 45315797 45315855 -117284075 - 5S rRNA rRNA -63 58 1 370 171 92 0 chrX 45316041 45316117 -117283813 + MIR SINE MIR 70 152 -110 1759 63 0 0 chrX 45316119 45316326 -117283604 + AluSc SINE Alu 89 295 -14 188 216 118 0 chrX 45316449 45316500 -117283430 + L2 LINE L2 3216 3272 0 306 164 0 0 chrX 45316955 45317010 -117282920 + (ATTG)n Simple_repeat Simple_repeat 1 55 0 482 240 25 50 chrX 45317342 45317463 -117282467 - MIR SINE MIR -61 147 30 614 288 47 38 chrX 45317669 45317881 -117282049 + MIR SINE MIR 20 233 -29 1338 285 121 26 chrX 45321014 45321586 -117278344 + L3 LINE CR1 950 1575 -2 680 194 144 7 chrX 45323124 45323263 -117276667 - FRAM SINE Alu -8 158 1 283 259 0 0 chrX 45323326 45323380 -117276550 - U1 snRNA snRNA -32 133 80 1720 138 44 27 chrX 45324151 45324447 -117275483 + AluJb SINE Alu 1 301 -11 385 362 20 7 chrX 45324475 45324627 -117275303 - MIR3 SINE MIR -39 169 16 207 0 0 0 chrX 45325439 45325462 -117274468 + (A)n Simple_repeat Simple_repeat 1 23 0 462 79 0 0 chrX 45326258 45326321 -117273609 + (CGG)n Simple_repeat Simple_repeat 2 64 0 192 152 0 0 chrX 45327348 45327381 -117272549 + A-rich Low_complexity Low_complexity 2 34 0 489 304 0 59 chrX 45329095 45329299 -117270631 + MIR SINE MIR 21 212 -50 440 311 122 22 chrX 45329594 45329774 -117270156 + MIR3 SINE MIR 2 199 -9 333 0 0 0 chrX 45329880 45329917 -117270013 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chrX 45330494 45330515 -117269415 + AT_rich Low_complexity Low_complexity 1 21 0 2111 94 13 20 chrX 45330679 45330978 -117268952 + AluSg SINE Alu 1 297 -13 184 29 29 29 chrX 45331036 45331070 -117268860 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2191 152 27 25 chrX 45331075 45331483 -117268447 - L1MB1 LINE L1 -17 6151 5743 1936 121 18 25 chrX 45331483 45331928 -117268002 - L1MA9 LINE L1 0 6312 5812 4951 104 40 3 chrX 45331954 45332678 -117267252 - Tigger3(Golem) DNA MER2_type -2 3027 2277 643 213 0 0 chrX 45332669 45332777 -117267153 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1801 143 19 23 chrX 45332795 45333103 -117266827 - L1M2 LINE L1 -519 5793 5487 694 151 36 0 chrX 45333110 45333249 -117266681 + L1M2 LINE L1 2714 2857 -3992 * 799 143 24 100 chrX 45333244 45333362 -117266568 - L1M2 LINE L1 -1399 4747 4650 2144 97 6 64 chrX 45333362 45333691 -117266239 - AluSg SINE Alu 0 310 1 799 143 24 100 chrX 45333691 45333782 -117266148 - L1M2 LINE L1 -1496 4650 4554 5718 146 27 25 chrX 45333798 45333916 -117266014 + L1MA4 LINE L1 5181 5297 -1003 378 0 0 0 chrX 45333916 45333958 -117265972 + (CA)n Simple_repeat Simple_repeat 2 43 0 5718 146 27 25 chrX 45333958 45334469 -117265461 + L1MA4 LINE L1 5297 5806 -494 1522 184 0 71 chrX 45334469 45334795 -117265135 + AluJo SINE Alu 1 303 -9 5718 146 27 25 chrX 45334795 45334926 -117265004 + L1MA4 LINE L1 5806 5935 -365 2293 94 3 38 chrX 45334926 45335246 -117264684 + AluSc SINE Alu 1 309 0 5718 146 27 25 chrX 45335246 45335602 -117264328 + L1MA4 LINE L1 5935 6299 -1 398 148 40 0 chrX 45335649 45335750 -117264180 + CT-rich Low_complexity Low_complexity 2 106 0 1318 174 13 0 chrX 45335753 45335977 -117263953 - AluJo SINE Alu 0 312 86 2468 90 0 0 chrX 45336009 45336319 -117263611 + AluSq SINE Alu 2 311 -2 308 319 69 17 chrX 45336372 45336488 -117263442 - MIR SINE MIR -20 242 121 360 0 0 0 chrX 45338444 45338484 -117261446 + (TG)n Simple_repeat Simple_repeat 2 41 0 192 40 0 0 chrX 45339296 45339321 -117260609 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 505 322 65 82 chrX 45339807 45340050 -117259880 + L2 LINE L2 2444 2690 -582 1569 193 0 0 chrX 45340050 45340289 -117259641 - MER8 DNA MER2_type 0 239 1 505 322 65 82 chrX 45340289 45340888 -117259042 + L2 LINE L2 2690 3270 -2 420 335 49 30 chrX 45341264 45341467 -117258463 + L2 LINE L2 2849 3055 -217 1227 268 49 6 chrX 45341516 45341841 -117258089 - MLT1K LTR MaLR -2 586 248 287 272 144 67 chrX 45341957 45342018 -117257912 + L2 LINE L2 3076 3131 -141 351 0 0 0 chrX 45342018 45342057 -117257873 + (TG)n Simple_repeat Simple_repeat 2 40 0 287 272 144 67 chrX 45342057 45342175 -117257755 + L2 LINE L2 3131 3269 -3 810 204 113 29 chrX 45342458 45342698 -117257232 + MIR SINE MIR 2 261 -1 775 258 5 16 chrX 45343256 45343450 -117256480 - MIR SINE MIR -19 243 52 1070 31 79 0 chrX 45343465 45343592 -117256338 - MER85 DNA T2_type -2 137 1 474 239 71 39 chrX 45343620 45343775 -117256155 + MIR SINE MIR 103 262 0 453 319 70 25 chrX 45344364 45344649 -117255281 + L1ME4a LINE L1 5548 5845 -276 593 270 25 35 chrX 45345055 45345255 -117254675 + MIR SINE MIR 23 220 -42 2149 146 22 28 chrX 45345256 45345558 -117254372 + MLT1A1 LTR MaLR 1 302 -63 1793 179 0 13 chrX 45345558 45345865 -117254065 - AluJo SINE Alu -9 303 1 2149 146 22 28 chrX 45345865 45345924 -117254006 + MLT1A1 LTR MaLR 302 360 -5 183 214 24 24 chrX 45345926 45345968 -117253962 + L2 LINE L2 3219 3260 -12 * 307 225 50 0 chrX 45345962 45346042 -117253888 + MIR SINE MIR 120 203 -59 1970 137 7 3 chrX 45346499 45346810 -117253120 + AluSq SINE Alu 1 312 0 267 287 57 41 chrX 45346837 45346959 -117252971 - MIR SINE MIR -6 256 133 277 315 167 63 chrX 45347042 45347874 -117252056 + L2 LINE L2 2345 3263 -9 811 231 30 15 chrX 45348013 45348216 -117251714 + L2 LINE L2 3105 3310 -3 252 361 112 39 chrX 45349462 45349625 -117250305 + L2 LINE L2 2516 2666 -648 2105 124 0 0 chrX 45349625 45349939 -117249991 - AluSx SINE Alu 0 314 1 252 361 112 39 chrX 45349939 45350104 -117249826 + L2 LINE L2 2666 2869 -445 974 237 46 50 chrX 45350138 45350399 -117249531 - MIR SINE MIR -6 256 2 184 282 64 39 chrX 45350615 45350693 -117249237 + L2 LINE L2 3201 3280 -33 577 227 73 84 chrX 45350885 45351016 -117248914 - L1MC4 LINE L1 -2 8040 7909 314 45 23 0 chrX 45351016 45351060 -117248870 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 577 227 73 84 chrX 45351060 45351285 -117248645 - L1MC4 LINE L1 -133 7909 7688 329 242 118 50 chrX 45351290 45351451 -117248479 + MIR SINE MIR 64 235 -27 842 256 65 12 chrX 45351473 45351719 -117248211 + MIR SINE MIR 3 261 -1 21 36 0 0 chrX 45351882 45351910 -117248020 + AT_rich Low_complexity Low_complexity 1 28 0 1003 206 36 12 chrX 45353408 45353655 -117246275 - L1MB8 LINE L1 -7 6171 5919 626 238 33 0 chrX 45353675 45353826 -117246104 + MIR SINE MIR 70 225 -37 1700 112 22 0 chrX 45353976 45354200 -117245730 - MER30 DNA MER1_type 0 230 2 435 287 101 42 chrX 45354459 45354696 -117245234 - L3 LINE CR1 -539 1038 788 302 0 26 0 chrX 45355328 45355366 -117244564 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5537 90 9 7 chrX 45355550 45356240 -117243690 - LTR8 LTR ERV1 0 691 1 21821 134 62 64 chrX 45356240 45357105 -117242825 - HUERS-P1 LTR ERV1 0 6263 5398 2401 90 3 0 chrX 45357105 45357405 -117242525 - AluSp SINE Alu -12 301 1 21821 134 62 64 chrX 45357405 45357859 -117242071 - HUERS-P1 LTR ERV1 -865 5398 4945 2235 78 0 11 chrX 45357859 45358165 -117241765 + AluSc SINE Alu 1 303 0 21821 134 62 64 chrX 45358165 45359758 -117240172 - HUERS-P1 LTR ERV1 -1318 4945 3350 2264 119 6 0 chrX 45359758 45360069 -117239861 - AluSp SINE Alu 0 313 1 21821 134 62 64 chrX 45360069 45361011 -117238919 - HUERS-P1 LTR ERV1 -2913 3350 2408 5726 27 2 6 chrX 45361011 45361644 -117238286 + L1PA5 LINE L1 5525 6154 0 21821 134 62 64 chrX 45361644 45361815 -117238115 - HUERS-P1 LTR ERV1 -3855 2408 2238 2271 95 0 10 chrX 45361815 45362109 -117237821 - AluSx SINE Alu -21 291 1 21821 134 62 64 chrX 45362109 45363895 -117236035 - HUERS-P1 LTR ERV1 -4025 2238 1 5215 85 6 54 chrX 45363895 45364621 -117235309 - LTR8 LTR ERV1 0 691 1 866 275 29 16 chrX 45365021 45365180 -117234750 + MIR SINE MIR 6 162 -100 1913 157 0 14 chrX 45365180 45365337 -117234593 - AluJb SINE Alu -22 290 132 300 27 0 0 chrX 45365337 45365374 -117234556 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2183 109 0 3 chrX 45365374 45365659 -117234271 - AluSx SINE Alu -28 284 1 1913 157 0 14 chrX 45365659 45365794 -117234136 - AluJb SINE Alu -178 134 1 866 275 29 16 chrX 45365794 45365878 -117234052 + MIR SINE MIR 162 252 -10 180 242 65 32 chrX 45365883 45365945 -117233985 - L3 LINE CR1 -822 755 692 1271 177 9 14 chrX 45366544 45366759 -117233171 - MER58A DNA MER1_type 0 224 11 1245 299 51 50 chrX 45366819 45367530 -117232400 + L2 LINE L2 2530 3244 -69 265 216 57 11 chrX 45367578 45367666 -117232264 - L1MA10 LINE L1 -2 6332 6241 1500 202 63 27 chrX 45367676 45368007 -117231923 - MER2 DNA MER2_type 0 344 2 241 174 0 0 chrX 45368030 45368076 -117231854 + LTR66 LTR ERVL 394 439 -171 242 284 14 0 chrX 45368089 45368163 -117231767 - L1ME1 LINE L1 -77 6089 6015 6645 200 19 17 chrX 45368275 45368734 -117231196 - L1MB4 LINE L1 0 6678 6221 2372 100 0 0 chrX 45368734 45369034 -117230896 - AluSx SINE Alu -12 300 1 6645 200 19 17 chrX 45369034 45369562 -117230368 - L1MB4 LINE L1 -457 6221 5696 2291 116 0 0 chrX 45369562 45369865 -117230065 - AluSx SINE Alu -9 303 1 6645 200 19 17 chrX 45369865 45371256 -117228674 - L1MB4 LINE L1 -982 5696 4302 1605 245 25 4 chrX 45371251 45371728 -117228202 - L1MB4 LINE L1 -2709 3935 3449 * 316 185 25 37 chrX 45371720 45371801 -117228129 - L1MB4 LINE L1 -5634 908 829 * 723 293 91 56 chrX 45371849 45372035 -117227895 - L1MB4 LINE L1 -5829 713 535 705 26 52 0 chrX 45372035 45372151 -117227779 + (TA)n Simple_repeat Simple_repeat 2 123 0 1579 147 42 53 chrX 45372154 45372439 -117227491 - AluJo SINE Alu -30 282 1 723 293 91 56 chrX 45372439 45372855 -117227075 - L1MB4 LINE L1 -6008 534 86 1609 81 0 27 chrX 45372869 45372955 -117226975 - L1MA3 LINE L1 -3 6302 6215 2452 148 52 47 chrX 45372955 45373381 -117226549 + MSTA LTR MaLR 1 428 0 1609 81 0 27 chrX 45373381 45373515 -117226415 - L1MA3 LINE L1 -90 6215 6088 181 356 0 0 chrX 45373559 45373618 -117226312 - MER5B DNA MER1_type -119 59 1 495 304 92 48 chrX 45374915 45375208 -117224722 - LTR33A LTR ERVL -15 508 203 468 297 67 113 chrX 45375672 45375999 -117223931 + L2 LINE L2 2961 3272 0 1999 189 101 2 chrX 45376365 45376762 -117223168 + MER63B DNA MER1_type 1 436 0 2355 95 0 3 chrX 45377175 45377480 -117222450 - AluSx SINE Alu -8 304 1 671 258 83 39 chrX 45377756 45377985 -117221945 - MIR SINE MIR -22 240 2 266 264 345 9 chrX 45379028 45379138 -117220792 + MER5B DNA MER1_type 1 147 -31 23 0 0 0 chrX 45379309 45379332 -117220598 + AT_rich Low_complexity Low_complexity 1 23 0 276 30 0 0 chrX 45379433 45379466 -117220464 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 30 0 0 chrX 45381168 45381201 -117218729 + AT_rich Low_complexity Low_complexity 1 33 0 2519 113 31 22 chrX 45381486 45381902 -117218028 - L1MA7 LINE L1 -103 6188 5769 4384 96 53 5 chrX 45381917 45382035 -117217895 - L1MA2 LINE L1 0 6304 6193 869 164 0 0 chrX 45382035 45382163 -117217767 - FLAM_C SINE Alu -5 128 1 4384 96 53 5 chrX 45382163 45382680 -117217250 - L1MA2 LINE L1 -111 6193 5638 252 195 0 0 chrX 45382894 45382935 -117216995 - MIR SINE MIR -79 129 89 475 279 76 70 chrX 45383038 45383421 -117216509 + L3 LINE CR1 1177 1561 -16 333 306 90 21 chrX 45384230 45384374 -117215556 + MER5A DNA MER1_type 35 188 -1 312 253 26 102 chrX 45384388 45384592 -117215338 - MIR SINE MIR -25 183 1 270 260 39 13 chrX 45386295 45386372 -117213558 - MIR SINE MIR -70 192 114 999 231 0 34 chrX 45386382 45386616 -117213314 - MIR SINE MIR -2 260 35 2261 107 0 0 chrX 45386674 45386983 -117212947 - AluY SINE Alu -2 309 1 1999 133 44 3 chrX 45386983 45387277 -117212653 - AluJo SINE Alu -6 306 1 385 288 196 0 chrX 45387421 45387574 -117212356 - L2 LINE L2 -1 3271 3089 * 401 318 114 30 chrX 45387555 45387791 -117212139 + MIR SINE MIR 6 261 -1 308 330 0 0 chrX 45388667 45388758 -117211172 - MIR SINE MIR -116 146 56 1267 228 33 22 chrX 45388758 45389250 -117210680 - MLT1E LTR MaLR 0 593 1 313 243 14 0 chrX 45389919 45389989 -117209941 - L2 LINE L2 0 3313 3243 1006 236 26 9 chrX 45390348 45390581 -117209349 - MIR SINE MIR -1 261 25 223 333 25 66 chrX 45390613 45390811 -117209119 - L2 LINE L2 -264 3008 2819 1767 161 9 38 chrX 45390826 45391143 -117208787 + AluJb SINE Alu 1 308 -4 259 257 14 68 chrX 45391205 45391279 -117208651 - L2 LINE L2 -3 3269 3200 471 285 12 30 chrX 45391307 45391472 -117208458 - L2 LINE L2 -179 3093 2932 606 239 0 15 chrX 45391789 45391919 -117208011 - MIR SINE MIR -113 149 22 264 273 73 45 chrX 45392036 45392082 -117207848 + MIR SINE MIR 102 145 -107 1330 271 48 23 chrX 45392082 45392399 -117207531 + MLT1I LTR MaLR 1 332 -77 216 97 0 0 chrX 45392399 45392430 -117207500 + (CA)n Simple_repeat Simple_repeat 2 32 0 1330 271 48 23 chrX 45392430 45392511 -117207419 + MLT1I LTR MaLR 331 409 0 264 273 73 45 chrX 45392511 45392579 -117207351 + MIR SINE MIR 145 212 -40 300 355 9 9 chrX 45393334 45393444 -117206486 - MIR SINE MIR -128 134 25 1048 152 134 172 chrX 45393446 45393835 -117206095 - MLT1A2 LTR MaLR 0 374 1 2285 201 46 0 chrX 45393835 45394252 -117205678 - MLT1A2-int LTR MaLR 0 1735 1300 324 164 0 60 chrX 45394320 45394387 -117205543 - MLT1A2-int LTR MaLR -994 741 679 1845 170 40 54 chrX 45394503 45395123 -117204807 - MLT1A2-int LTR MaLR -629 742 5 2075 197 19 96 chrX 45395127 45395169 -117204761 - MLT2B1 LTR ERVL 0 520 476 1254 95 0 0 chrX 45395169 45395348 -117204582 + (TA)n Simple_repeat Simple_repeat 2 180 0 2075 197 19 96 chrX 45395348 45395868 -117204062 - MLT2B1 LTR ERVL -44 476 1 308 323 121 20 chrX 45396026 45396224 -117203706 + L2 LINE L2 2653 2870 -444 331 307 140 7 chrX 45397518 45397668 -117202262 - MIR SINE MIR -73 189 20 202 200 0 0 chrX 45398782 45398817 -117201113 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 377 376 14 28 chrX 45398842 45399132 -117200798 - L2 LINE L2 -341 2973 2688 966 288 141 9 chrX 45399444 45399975 -117199955 + L2 LINE L2 1684 2284 -1030 12737 100 15 17 chrX 45399975 45400795 -117199135 - Tigger1 DNA MER2_type -1 2417 1596 2175 109 3 16 chrX 45400795 45401099 -117198831 - AluSx SINE Alu -12 300 1 12737 100 15 17 chrX 45401099 45402116 -117197814 - Tigger1 DNA MER2_type -822 1596 585 5905 224 123 51 chrX 45402117 45403376 -117196554 + L1MA4 LINE L1 1 1458 -5751 192 40 0 0 chrX 45403376 45403401 -117196529 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 5905 224 123 51 chrX 45403401 45404200 -117195730 + L1MA4 LINE L1 1458 2198 -5011 * 9577 159 23 10 chrX 45404195 45405783 -117194147 + L1MA4 LINE L1 4628 6244 -964 3895 182 8 48 chrX 45405783 45406535 -117193395 + MER72 LTR ERV1 1 722 0 9577 159 23 10 chrX 45406535 45406696 -117193234 + L1MA4 LINE L1 6244 6401 -807 7203 106 16 16 chrX 45406686 45407173 -117192757 + L1MA1 LINE L1 5016 5502 -800 * 2122 123 30 0 chrX 45407173 45407474 -117192456 + AluSx SINE Alu 1 310 -2 7203 106 16 16 chrX 45407474 45408264 -117191666 + L1MA1 LINE L1 5502 6293 -9 6188 133 17 1 chrX 45408277 45409237 -117190693 + L1MA4 LINE L1 6379 7353 -9 3324 127 30 74 chrX 45409237 45409861 -117190069 - Tigger1 DNA MER2_type -1821 597 1 3839 133 45 23 chrX 45409923 45410659 -117189271 - LTR1B LTR ERV1 0 826 1 191 302 86 17 chrX 45410663 45410779 -117189151 + L2 LINE L2 2358 2481 -833 697 280 98 64 chrX 45410779 45411144 -117188786 + L2 LINE L2 2772 3158 -155 3745 155 75 5 chrX 45411144 45411796 -117188134 - LTR34 LTR ERV1 -1 698 1 697 280 98 64 chrX 45411796 45411954 -117187976 + L2 LINE L2 3158 3309 -4 2237 82 7 3 chrX 45412093 45412384 -117187546 + AluSx SINE Alu 1 292 -20 34 0 0 0 chrX 45413458 45413492 -117186438 + AT_rich Low_complexity Low_complexity 1 34 0 405 282 56 14 chrX 45413989 45414131 -117185799 + MIR SINE MIR 28 175 -87 411 343 10 43 chrX 45414448 45414655 -117185275 - L2 LINE L2 -210 3062 2863 555 348 44 0 chrX 45414675 45414833 -117185097 + MER91A DNA MER1_type 2 166 -30 196 226 69 88 chrX 45414879 45414981 -117184949 + L2 LINE L2 2794 2893 -421 217 139 0 0 chrX 45415496 45415532 -117184398 - L2 LINE L2 -3 3310 3275 548 282 56 42 chrX 45415663 45415879 -117184051 + MIR SINE MIR 5 223 -39 200 298 58 29 chrX 45416026 45416130 -117183800 + L2 LINE L2 3165 3271 -42 * 216 317 85 12 chrX 45416126 45416208 -117183722 + L2 LINE L2 3155 3242 -30 439 110 0 121 chrX 45416214 45416305 -117183625 + MADE1 DNA Mariner 1 80 0 757 236 25 0 chrX 45416309 45416470 -117183460 - MIR SINE MIR -62 200 36 196 259 111 0 chrX 45416484 45416538 -117183392 + L2 LINE L2 3210 3269 -3 301 243 48 19 chrX 45417138 45417241 -117182689 - MIR SINE MIR -49 213 108 984 218 0 15 chrX 45417916 45418122 -117181808 - AluJo SINE Alu -4 308 106 1739 229 48 77 chrX 45418536 45419157 -117180773 + L1M3e LINE L1 177 779 -6251 * 2092 133 33 5 chrX 45419155 45419537 -117180393 + L1M2 LINE L1 5231 5622 -669 11549 108 19 15 chrX 45419666 45421370 -117178560 - Tigger1 DNA MER2_type -123 2295 585 3600 213 167 55 chrX 45421396 45422577 -117177353 + L1M2b LINE L1 1 1313 -5896 1572 216 32 3 chrX 45422698 45423041 -117176889 - L1M4 LINE L1 -1788 4358 4006 5114 176 76 17 chrX 45423049 45423640 -117176290 + L1MC2 LINE L1 4735 5290 -1054 2259 104 0 0 chrX 45423640 45423928 -117176002 + AluSg SINE Alu 1 288 -22 5114 176 76 17 chrX 45423928 45424790 -117175140 + L1MC2 LINE L1 5290 6280 -64 2326 141 93 44 chrX 45424796 45424900 -117175030 - L1MA8 LINE L1 0 6291 6193 2435 76 0 16 chrX 45424900 45425215 -117174715 + AluSg SINE Alu 1 310 0 2326 141 93 44 chrX 45425215 45425606 -117174324 - L1MA8 LINE L1 -98 6193 5772 1206 43 7 0 chrX 45425606 45425746 -117174184 - L1PA7 LINE L1 -2 6152 6012 2750 183 100 8 chrX 45425846 45426457 -117173473 + L1MB7 LINE L1 5518 6184 0 1983 116 4 4 chrX 45428371 45428647 -117171283 - AluSx SINE Alu -36 276 1 368 236 254 33 chrX 45428700 45428892 -117171038 - MIR SINE MIR -17 245 19 2411 56 3 0 chrX 45429130 45429458 -117170472 + AluSp SINE Alu 1 329 0 467 213 35 57 chrX 45430700 45430841 -117169089 - MIR SINE MIR -120 142 5 1270 158 78 89 chrX 45430842 45431391 -117168539 + Tigger2 DNA MER2_type 1 543 -2175 556 171 0 0 chrX 45431391 45431473 -117168457 + AluJ/FRAM SINE Alu 214 295 -17 1274 147 30 0 chrX 45431506 45431703 -117168227 + Tigger2 DNA MER2_type 552 754 -1964 950 171 149 22 chrX 45431768 45431949 -117167981 - AluJb SINE Alu -23 289 86 1446 142 9 0 chrX 45431949 45432167 -117167763 - AluJo SINE Alu -92 220 1 689 159 63 0 chrX 45432167 45432293 -117167637 + Tigger2 DNA MER2_type 2492 2625 -93 1203 204 0 42 chrX 45432294 45432534 -117167396 + MER8 DNA MER2_type 2 231 -8 513 115 39 115 chrX 45432541 45432645 -117167285 + Tigger2 DNA MER2_type 2623 2718 0 444 229 0 79 chrX 45432661 45432801 -117167129 - MER112 DNA MER1_type -131 129 1 323 276 96 27 chrX 45432804 45432930 -117167000 - L1ME LINE L1 -522 5640 5505 317 255 75 107 chrX 45432981 45433180 -117166750 - L1ME LINE L1 -647 5517 5325 291 299 179 0 chrX 45433198 45433315 -117166615 - MIR SINE MIR -77 185 48 458 248 28 48 chrX 45433455 45433600 -117166330 - MIR SINE MIR -52 210 69 202 290 14 29 chrX 45433606 45433675 -117166255 - MIR SINE MIR -115 93 26 767 204 68 0 chrX 45434025 45434187 -117165743 + MER5B DNA MER1_type 6 178 0 342 352 91 17 chrX 45434222 45434398 -117165532 - MER5A DNA MER1_type 0 189 1 369 305 52 9 chrX 45434868 45435078 -117164852 + L1ME3A LINE L1 5717 5935 -235 2920 6 6 0 chrX 45435083 45435398 -117164532 + AluYb8 SINE Alu 1 317 -1 2374 70 0 38 chrX 45435404 45435718 -117164212 + AluY SINE Alu 1 302 -9 198 0 0 0 chrX 45436081 45436103 -117163827 + (CA)n Simple_repeat Simple_repeat 2 23 0 1905 208 20 100 chrX 45437002 45437593 -117162337 + MLT2B3 LTR ERVL 5 548 -6 2369 209 79 51 chrX 45440035 45440644 -117159286 + MLT1E2 LTR MaLR 1 626 0 443 175 0 107 chrX 45440882 45440985 -117158945 + MER21B LTR ERV1 1 92 -771 2542 228 88 48 chrX 45441043 45441792 -117158138 + MER21B LTR ERV1 69 847 -16 199 315 0 0 chrX 45441792 45441846 -117158084 + L2 LINE L2 3217 3270 -2 348 190 8 16 chrX 45442060 45442181 -117157749 + (CCCTAA)n Simple_repeat Simple_repeat 1 120 0 1619 188 33 44 chrX 45443010 45443059 -117156871 - L1MB5 LINE L1 -9 6165 6117 2522 86 0 0 chrX 45443059 45443374 -117156556 - L1PA8 LINE L1 -6 6166 5852 1619 188 33 44 chrX 45443374 45443691 -117156239 - L1MB5 LINE L1 -57 6117 5803 * 1967 191 49 5 chrX 45443678 45444103 -117155827 - L1MB3 LINE L1 -9 6174 5731 1886 185 115 3 chrX 45444335 45444718 -117155212 - MSTB LTR MaLR 0 426 1 21100 88 34 25 chrX 45444985 45448738 -117151192 - L1PA7 LINE L1 -2 6467 2677 185 0 40 0 chrX 45448738 45448763 -117151167 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 21100 88 34 25 chrX 45448763 45448778 -117151152 - L1PA7 LINE L1 -3792 2677 2664 44297 47 2 0 chrX 45448778 45454892 -117145038 - L1PA4 LINE L1 -31 6124 2 12400 111 14 55 chrX 45454892 45457610 -117142320 - L1PA7 LINE L1 -3743 2718 9 254 111 0 0 chrX 45457688 45457724 -117142206 - LTR49 LTR ERV1 -385 210 175 837 243 52 19 chrX 45457949 45458217 -117141713 - LTR57-int LTR ERVL -3833 1510 1234 527 154 79 167 chrX 45458155 45458395 -117141535 - LTR49-int LTR ERV1 -225 3137 1343 * 684 312 32 14 chrX 45458381 45458602 -117141328 - LTR49-int LTR ERV1 -3601 2345 2121 1148 187 42 35 chrX 45458669 45458952 -117140978 - LTR49-int LTR ERV1 -2614 2266 1982 263 319 0 0 chrX 45459004 45459073 -117140857 - tRNA-Glu-GAG tRNA tRNA 0 75 7 5766 174 78 22 chrX 45459073 45460219 -117139711 - LTR49-int LTR ERV1 -5119 1212 2 2555 163 151 2 chrX 45460221 45460738 -117139192 - LTR49 LTR ERV1 0 595 2 226 58 115 19 chrX 45461142 45461194 -117138736 - L1MCa LINE L1 -4362 2064 2008 313 305 46 33 chrX 45461648 45461799 -117138131 - L2 LINE L2 -515 2799 2647 617 333 52 33 chrX 45463376 45463796 -117136134 + MER89-int LTR ERV1 158 585 -4062 262 308 92 39 chrX 45464312 45464442 -117135488 + MER89-int LTR ERV1 3784 3920 -2881 556 341 44 54 chrX 45465035 45465718 -117134212 + MER89-int LTR ERV1 2179 2854 -1793 699 199 51 19 chrX 45466213 45466369 -117133561 - MLT1A2 LTR MaLR -213 161 1 2256 226 52 16 chrX 45468723 45469272 -117130658 + MER77 LTR ERV1 54 673 -4 230 294 37 18 chrX 45470505 45470614 -117129316 - L1M4 LINE L1 -1300 4846 4736 2382 91 0 0 chrX 45470672 45470970 -117128960 - AluSx SINE Alu -14 298 1 335 349 91 32 chrX 45471077 45471607 -117128323 - L1M4 LINE L1 -1623 4523 3963 241 221 65 13 chrX 45471781 45471858 -117128072 + LTR40a LTR ERVL 19 99 -420 569 241 17 31 chrX 45471936 45472178 -117127752 + LTR40a LTR ERVL 126 403 -116 2913 155 9 0 chrX 45472457 45472916 -117127014 - L1PA16 LINE L1 0 6166 5704 1311 118 0 15 chrX 45472917 45473112 -117126818 - L1P4 LINE L1 -387 5779 5588 826 116 0 0 chrX 45473388 45473500 -117126430 + AluJb SINE Alu 184 295 -17 1296 260 12 9 chrX 45474690 45475032 -117124898 - L1ME LINE L1 -395 5775 5433 263 208 17 78 chrX 45475054 45475171 -117124759 - L1PA16 LINE L1 -690 5466 5356 2123 123 73 56 chrX 45477515 45477722 -117122208 - THE1B LTR MaLR 0 364 162 2195 96 0 4 chrX 45477722 45478002 -117121928 + AluY SINE Alu 1 279 -32 216 0 0 0 chrX 45478002 45478026 -117121904 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2123 123 73 56 chrX 45478026 45478175 -117121755 - THE1B LTR MaLR -201 163 1 532 281 44 0 chrX 45478538 45478753 -117121177 - L1ME LINE L1 -533 5637 5396 760 273 39 14 chrX 45478759 45479045 -117120885 - L1ME LINE L1 -1359 4787 4495 967 161 21 57 chrX 45479205 45479398 -117120532 - MER5A DNA MER1_type -3 186 1 210 71 0 0 chrX 45479618 45479646 -117120284 + (TAAAAA)n Simple_repeat Simple_repeat 4 31 0 507 333 37 86 chrX 45481154 45481713 -117118217 - L2 LINE L2 -62 3210 2684 1803 312 40 27 chrX 45481721 45482548 -117117382 + HERV16 LTR ERVL 869 1772 -3224 269 241 0 0 chrX 45482561 45482615 -117117315 - HERV16 LTR ERVL -3006 1990 1937 1083 172 74 45 chrX 45482822 45483066 -117116864 + Tigger6 DNA MER2_type 1347 1597 0 422 316 56 14 chrX 45483078 45483293 -117116637 - L1M4 LINE L1 -1430 4716 4493 1595 156 106 16 chrX 45483310 45483630 -117116300 - MLT1C LTR MaLR 0 467 119 371 203 0 0 chrX 45483630 45483694 -117116236 - MLT1C-int LTR MaLR -1307 64 1 2024 163 123 26 chrX 45483695 45484118 -117115812 - MLT1C LTR MaLR -3 464 1 407 317 6 24 chrX 45484202 45484369 -117115561 + LTR41 LTR ERVL 9 172 -601 203 182 0 0 chrX 45484712 45484745 -117115185 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 422 334 92 10 chrX 45484768 45485082 -117114848 - L1M4 LINE L1 -1878 4268 3929 517 325 46 15 chrX 45485083 45485495 -117114435 - L1M4 LINE L1 -2296 3850 3426 557 229 50 15 chrX 45485904 45486105 -117113825 - L1M4 LINE L1 -1481 4665 4458 549 227 49 54 chrX 45486190 45486393 -117113537 - L1ME1 LINE L1 -6 6160 5959 829 155 0 0 chrX 45487474 45487590 -117112340 - FLAM_C SINE Alu -14 129 14 2374 78 3 3 chrX 45488685 45488979 -117110951 + AluSp SINE Alu 1 294 -19 633 129 0 0 chrX 45490215 45490316 -117109614 - L1MB2 LINE L1 -2 6169 6069 189 294 103 0 chrX 45491738 45491806 -117108124 + L2 LINE L2 3148 3222 -50 2548 65 0 3 chrX 45493110 45493417 -117106513 + AluY SINE Alu 1 306 -5 247 256 33 33 chrX 45496878 45496968 -117102962 + MIR SINE MIR 41 130 -78 2270 91 0 7 chrX 45497799 45498107 -117101823 - AluSp SINE Alu 0 308 3 199 331 87 39 chrX 45499039 45499166 -117100764 + MIR SINE MIR 111 243 -19 22 0 0 0 chrX 45499526 45499548 -117100382 + AT_rich Low_complexity Low_complexity 1 22 0 229 321 28 9 chrX 45499646 45499752 -117100178 + LTR16B LTR ERVL 348 455 -9 345 296 79 7 chrX 45499771 45499923 -117100007 + L1ME3 LINE L1 5909 6071 -91 189 271 0 0 chrX 45499927 45499975 -117099955 - L2 LINE L2 -2 3311 3264 372 268 24 31 chrX 45500328 45500455 -117099475 + GA-rich Low_complexity Low_complexity 6 131 0 1777 216 14 0 chrX 45500473 45500839 -117099091 - L1M4 LINE L1 -3184 2962 2592 5011 85 22 2 chrX 45500839 45501460 -117098470 + L1PA11 LINE L1 5525 6174 0 285 175 88 0 chrX 45501496 45501633 -117098297 + (TA)n Simple_repeat Simple_repeat 1 149 0 426 200 48 9 chrX 45501694 45501799 -117098131 + L1MB7 LINE L1 6074 6182 -2 182 167 28 0 chrX 45501804 45501840 -117098090 + MIR SINE MIR 78 114 -148 253 330 74 106 chrX 45502045 45502384 -117097546 + L2 LINE L2 2945 3272 0 194 256 23 0 chrX 45502441 45502484 -117097446 - MIR SINE MIR -134 74 31 363 377 59 19 chrX 45502540 45502914 -117097016 + L2 LINE L2 490 878 -2436 1568 214 13 52 chrX 45502914 45503076 -117096854 + MLT1A2 LTR MaLR 1 168 -206 1801 166 10 22 chrX 45503076 45503389 -117096541 + AluJo SINE Alu 3 311 -1 1568 214 13 52 chrX 45503389 45503610 -117096320 + MLT1A2 LTR MaLR 168 369 -5 590 410 52 9 chrX 45503611 45504167 -117095763 + L2 LINE L2 916 1495 -1819 1364 158 170 15 chrX 45505308 45505567 -117094363 + AluJo SINE Alu 3 301 -1 24 0 0 0 chrX 45506185 45506209 -117093721 + AT_rich Low_complexity Low_complexity 1 24 0 313 288 209 57 chrX 45507016 45507193 -117092737 + MIR SINE MIR 7 210 -52 2435 82 0 3 chrX 45507275 45507580 -117092350 + AluSx SINE Alu 1 304 -8 261 170 0 0 chrX 45508043 45508090 -117091840 - MER89 LTR ERV1 0 559 513 682 212 42 12 chrX 45509772 45509937 -117089993 + MER96B DNA MER1_type? 1 170 -247 2215 119 0 0 chrX 45509945 45510240 -117089690 - AluSx SINE Alu -17 295 1 55 72 0 0 chrX 45510483 45510594 -117089336 + AT_rich Low_complexity Low_complexity 1 111 0 523 235 37 25 chrX 45510595 45510757 -117089173 + MER96B DNA MER1_type? 254 417 0 888 320 111 4 chrX 45510759 45511365 -117088565 + L2 LINE L2 2565 3242 -71 2341 121 12 12 chrX 45511436 45511775 -117088155 - MER44D DNA MER2_type 0 609 1 2350 122 57 0 chrX 45511853 45512206 -117087724 - L1PB4 LINE L1 0 6156 5784 207 0 0 0 chrX 45513139 45513162 -117086768 + (CAA)n Simple_repeat Simple_repeat 2 24 0 291 149 0 122 chrX 45513492 45513566 -117086364 + L1M4 LINE L1 5708 5772 -412 221 317 127 81 chrX 45513989 45514374 -117085556 - L2 LINE L2 -42 3230 2828 308 289 155 0 chrX 45515397 45515591 -117084339 + L1M4 LINE L1 5006 5229 -917 4050 240 62 10 chrX 45515740 45516903 -117083027 + L1 LINE L1 90 1372 -4151 1588 79 0 0 chrX 45516903 45517105 -117082825 - MER4E LTR ERV1 0 766 565 1469 146 114 11 chrX 45517109 45517390 -117082540 - MER4B LTR ERV1 -300 310 1 1235 207 0 0 chrX 45517390 45517636 -117082294 + L1 LINE L1 1369 1614 -4714 283 114 129 29 chrX 45517737 45517807 -117082123 + L1 LINE L1 3373 3449 -2879 * 1632 270 40 9 chrX 45517802 45518254 -117081676 + L1M1 LINE L1 13 478 -7087 5873 174 30 4 chrX 45518266 45519403 -117080527 + L1M1 LINE L1 2035 3200 -4365 * 7146 185 48 20 chrX 45519398 45520823 -117079107 - L1M1 LINE L1 -6087 1478 14 2712 123 83 11 chrX 45520827 45521297 -117078633 + L1MA4 LINE L1 5790 6293 -7 328 246 2 14 chrX 45521298 45521395 -117078535 + L1ME4a LINE L1 5669 5764 -398 228 222 56 0 chrX 45521544 45521598 -117078332 - LTR16B LTR ERVL -407 57 1 1918 333 67 34 chrX 45521665 45522919 -117077011 - HERV16 LTR ERVL -598 5166 3871 1695 260 59 35 chrX 45522919 45523427 -117076503 + MLT2B3 LTR ERVL 4 523 -31 2146 315 44 28 chrX 45523444 45524890 -117075040 - HERV16 LTR ERVL -2853 2143 611 290 344 65 14 chrX 45525446 45525722 -117074208 - LTR16B LTR ERVL 0 464 175 410 360 68 37 chrX 45525747 45525962 -117073968 + L1PB4 LINE L1 22 229 -6980 2563 36 7 3 chrX 45525962 45526268 -117073662 - AluY SINE Alu -4 307 1 410 360 68 37 chrX 45526268 45527022 -117072908 + L1PB4 LINE L1 229 1274 -5935 753 196 40 17 chrX 45527248 45527421 -117072509 + L1PB4 LINE L1 3408 3584 -3624 624 278 88 34 chrX 45527418 45527731 -117072199 + L1PB4 LINE L1 3911 4243 -2965 * 2692 111 86 2 chrX 45527731 45528126 -117071804 + MSTA LTR MaLR 1 428 0 9075 182 29 12 chrX 45528126 45529744 -117070186 + MSTA-int LTR MaLR 1 1646 -5 2227 190 86 0 chrX 45529749 45530143 -117069787 + MSTA LTR MaLR 1 428 0 7498 166 31 107 chrX 45530150 45533404 -117066526 + L1PB4 LINE L1 4247 7214 -4 394 382 0 0 chrX 45533442 45533599 -117066331 - LTR16B LTR ERVL -307 157 1 269 266 21 11 chrX 45533661 45533755 -117066175 + L1ME4a LINE L1 5932 6026 -95 355 367 43 52 chrX 45534017 45534688 -117065242 - L2 LINE L2 -1604 1710 1046 375 325 51 54 chrX 45534752 45535047 -117064883 + L1M4 LINE L1 14 307 -6235 4619 178 11 7 chrX 45535330 45536196 -117063734 + L1MA7 LINE L1 5257 6126 -165 366 281 196 16 chrX 45537256 45537492 -117062438 - L1MC4a LINE L1 -95 6026 5789 332 308 119 63 chrX 45537551 45537900 -117062030 - L1MEd LINE L1 -1329 1161 824 2292 84 0 10 chrX 45538366 45538664 -117061266 - AluSq SINE Alu -13 300 6 588 281 138 0 chrX 45538897 45539100 -117060830 - MIR SINE MIR -21 241 11 565 303 106 39 chrX 45539144 45539662 -117060268 + L1MC/D LINE L1 5272 5824 -1984 228 254 315 22 chrX 45539806 45539987 -117059943 + MIR SINE MIR 15 248 -14 192 77 0 0 chrX 45541041 45541067 -117058863 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 1933 139 0 17 chrX 45541111 45541413 -117058517 + AluSx SINE Alu 13 309 -3 1386 204 4 22 chrX 45541471 45541740 -117058190 + AluJo SINE Alu 1 264 -48 356 329 84 32 chrX 45542035 45542284 -117057646 - L3 LINE CR1 -12 1565 1304 1464 242 60 39 chrX 45542487 45542950 -117056980 + HsTC2a DNA Tc2 11 483 -261 5230 126 32 0 chrX 45542950 45543723 -117056207 + L1P3 LINE L1 9 806 -5655 617 174 93 143 chrX 45543824 45544083 -117055847 + HsTC2a DNA Tc2 465 710 -32 546 276 54 87 chrX 45544146 45544592 -117055338 + MLT1J1 LTR MaLR 16 446 0 2533 63 0 0 chrX 45544980 45545283 -117054647 + AluY SINE Alu 3 305 -6 364 207 22 7 chrX 45545284 45545385 -117054545 + L1M3a LINE L1 611 900 -5746 379 170 170 105 chrX 45545457 45545763 -117054167 + L1MB4 LINE L1 837 1162 -5380 2332 91 0 0 chrX 45545781 45546077 -117053853 - AluSp SINE Alu -17 296 1 10931 128 53 28 chrX 45546219 45547414 -117052516 - Tigger2 DNA MER2_type -319 2399 1235 2349 67 0 7 chrX 45547414 45547712 -117052218 - AluY SINE Alu -15 296 1 10931 128 53 28 chrX 45547712 45547795 -117052135 - Tigger2 DNA MER2_type -1483 1235 1156 1907 160 7 0 chrX 45547795 45548088 -117051842 - AluSx SINE Alu -15 297 3 10931 128 53 28 chrX 45548088 45548782 -117051148 - Tigger2 DNA MER2_type -1562 1156 377 301 88 0 18 chrX 45548907 45548964 -117050966 + L1MA7 LINE L1 6233 6288 -3 8435 232 43 24 chrX 45548969 45551286 -117048644 + L1MB4 LINE L1 2646 4916 -1762 2069 119 0 3 chrX 45551286 45551571 -117048359 + AluSq SINE Alu 1 284 -29 183 42 0 0 chrX 45551578 45551602 -117048328 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 8435 232 43 24 chrX 45551602 45553181 -117046749 + L1MB4 LINE L1 4921 6629 -49 1371 231 70 62 chrX 45553182 45553783 -117046147 + L1MD2 LINE L1 5736 6341 -18 1268 300 60 10 chrX 45554542 45555125 -117044805 + L1M3a LINE L1 989 1600 -4965 448 85 24 0 chrX 45555147 45555229 -117044701 + L1 LINE L1 3868 3951 -2195 1134 225 44 94 chrX 45555249 45556090 -117043840 - L1M4 LINE L1 -1959 4187 3409 489 205 43 18 chrX 45556430 45556595 -117043335 - L1M4 LINE L1 -1492 4654 4485 1321 229 29 43 chrX 45557150 45557526 -117042404 + MLT1A2 LTR MaLR 4 374 0 256 149 0 0 chrX 45559007 45559054 -117040876 - L2 LINE L2 0 3313 3267 499 297 27 14 chrX 45559318 45559466 -117040464 - L3 LINE CR1 -21 1556 1407 322 250 100 0 chrX 45560329 45560409 -117039521 - L2 LINE L2 0 3272 3185 300 280 51 17 chrX 45561308 45561426 -117038504 - L2 LINE L2 -177 3095 2974 272 316 0 0 chrX 45562099 45562178 -117037752 + LTR16A LTR ERVL 16 94 -356 628 308 33 22 chrX 45562215 45562491 -117037439 + LTR16A LTR ERVL 165 443 -7 266 289 44 11 chrX 45562607 45562697 -117037233 + L2 LINE L2 3204 3296 -17 799 224 73 41 chrX 45563122 45563368 -117036562 + MIR SINE MIR 5 258 -4 192 234 0 21 chrX 45563473 45563520 -117036410 - MER5A DNA MER1_type -85 104 59 4013 191 43 4 chrX 45565001 45566160 -117033770 - L1MB8 LINE L1 -16 6162 4969 1780 110 123 10 chrX 45566160 45566468 -117033462 - MER61A LTR ERV1 0 343 1 19977 91 34 25 chrX 45566468 45568190 -117031740 - MER61A-int LTR ERV1 0 6064 4359 2414 65 3 3 chrX 45568190 45568498 -117031432 + AluSx SINE Alu 1 308 -4 19977 91 34 25 chrX 45568498 45570493 -117029437 - MER61A-int LTR ERV1 -1705 4359 1318 1048 162 45 41 chrX 45570530 45571088 -117028842 - MER61A-int LTR ERV1 -4517 700 1 1717 146 77 16 chrX 45571088 45571411 -117028519 - MER61A LTR ERV1 0 343 1 2591 228 13 13 chrX 45571412 45571861 -117028069 - L1MB8 LINE L1 -1175 4971 4520 3466 88 32 4 chrX 45571861 45572360 -117027570 + LTR10D LTR ERV1 1 513 0 2591 228 13 13 chrX 45572360 45572594 -117027336 - L1MB8 LINE L1 -1625 4521 4288 240 302 48 0 chrX 45572849 45572912 -117027018 - MIR SINE MIR -62 146 81 4066 191 67 21 chrX 45573068 45573785 -117026145 + L1MB8 LINE L1 4441 5123 -1055 2316 107 0 10 chrX 45573785 45574093 -117025837 + AluSp SINE Alu 1 305 -8 4066 191 67 21 chrX 45574093 45575021 -117024909 + L1MB8 LINE L1 5123 6168 -10 559 299 37 0 chrX 45575104 45575238 -117024692 + MER91C DNA MER1_type 2 140 0 392 289 59 44 chrX 45575556 45575760 -117024170 - L1ME4a LINE L1 -174 5947 5741 646 239 19 44 chrX 45575819 45576024 -117023906 + L2 LINE L2 3113 3312 -1 629 245 33 7 chrX 45576791 45576942 -117022988 - MIR SINE MIR -88 174 20 332 308 27 41 chrX 45576946 45577092 -117022838 + MIR3 SINE MIR 34 177 -31 * 379 303 16 72 chrX 45577064 45577275 -117022655 - MIR SINE MIR -32 230 33 194 213 21 21 chrX 45577615 45577662 -117022268 - MER5A DNA MER1_type -28 161 115 1965 99 19 0 chrX 45577697 45577960 -117021970 + AluSx SINE Alu 39 306 -6 275 295 137 3 chrX 45578116 45578230 -117021700 - MIR SINE MIR -16 192 65 1950 204 2 15 chrX 45578296 45578662 -117021268 - MLT2C1 LTR ERVL 0 397 35 3806 165 62 11 chrX 45578662 45579360 -117020570 + MER44D DNA MER2_type 1 605 0 1950 204 2 15 chrX 45579360 45579395 -117020535 - MLT2C1 LTR ERVL -362 35 1 607 250 0 26 chrX 45579695 45579847 -117020083 + MIR SINE MIR 107 254 -8 468 255 118 0 chrX 45580235 45580388 -117019542 - MIR SINE MIR -80 182 12 2411 103 0 3 chrX 45580455 45580765 -117019165 - AluSg1 SINE Alu 0 309 1 704 149 9 0 chrX 45580792 45580899 -117019031 + FLAM_C SINE Alu 1 108 -35 5091 77 1 5 chrX 45580899 45581561 -117018369 + PABL_A LTR ERV1 1 660 0 2079 146 0 3 chrX 45581608 45581910 -117018020 + AluJb SINE Alu 2 302 -10 1049 205 35 108 chrX 45582830 45583033 -117016897 - MLT1B LTR MaLR -1 395 179 414 0 0 0 chrX 45583033 45583079 -117016851 + (TA)n Simple_repeat Simple_repeat 2 47 0 1855 140 7 7 chrX 45583079 45583351 -117016579 - AluJo SINE Alu -28 284 13 1049 205 35 108 chrX 45583351 45583565 -117016365 - MLT1B LTR MaLR -215 181 1 185 283 67 0 chrX 45584047 45584107 -117015823 - MIR SINE MIR -79 183 120 390 203 248 20 chrX 45584126 45584279 -117015651 - L2 LINE L2 -5 3308 3121 1150 295 58 58 chrX 45584554 45585108 -117014822 - L2 LINE L2 -4 3309 2753 2180 75 4 4 chrX 45585108 45585424 -117014506 - AluY SINE Alu 0 316 1 1150 295 58 58 chrX 45585424 45585563 -117014367 - L2 LINE L2 -560 2753 2615 233 281 35 18 chrX 45585563 45585677 -117014253 + L1MDb LINE L1 142 257 -6286 421 270 75 61 chrX 45586426 45586785 -117013145 + L1MDb LINE L1 905 1268 -5275 1532 238 17 94 chrX 45586794 45587274 -117012656 + MLT1E LTR MaLR 1 443 -150 5363 127 1 2 chrX 45587384 45588230 -117011700 - L1PA15 LINE L1 -6 6159 5315 1697 245 68 35 chrX 45588229 45589036 -117010894 + L1MDb LINE L1 1518 2351 -4189 * 1096 175 24 22 chrX 45589085 45589325 -117010605 - L1MB5 LINE L1 -8 6664 6422 406 181 0 0 chrX 45589334 45589406 -117010524 + MER21B LTR ERV1 13 84 -779 * 2141 213 108 12 chrX 45589404 45589997 -117009933 + MER21B LTR ERV1 213 862 -1 2544 188 28 7 chrX 45590008 45590583 -117009347 - L1MB5 LINE L1 -231 6441 5855 5500 239 60 8 chrX 45590656 45592452 -117007478 - L1MB5 LINE L1 -1250 5394 3506 6262 54 1 2 chrX 45592501 45593313 -117006617 - L1PA6 LINE L1 0 6154 5344 2090 166 9 49 chrX 45593317 45593424 -117006506 - MER54A LTR ERVL -3 898 788 2357 87 0 7 chrX 45593424 45593723 -117006207 - AluSg SINE Alu -13 297 1 2090 166 9 49 chrX 45593723 45594043 -117005887 - MER54A LTR ERVL -113 788 488 1561 223 52 29 chrX 45594125 45595301 -117004629 - L1MB5 LINE L1 -3159 3485 2210 2136 126 0 16 chrX 45595301 45595611 -117004319 + AluSx SINE Alu 1 305 -7 1561 223 52 29 chrX 45595611 45595638 -117004292 - L1MB5 LINE L1 -4434 2210 2185 1877 196 38 31 chrX 45595693 45596137 -117003793 - MLT1C LTR MaLR -20 447 1 3253 256 74 21 chrX 45596140 45597341 -117002589 - L1MB5 LINE L1 -4565 2081 745 288 0 0 0 chrX 45597341 45597373 -117002557 + (TG)n Simple_repeat Simple_repeat 2 33 0 3253 256 74 21 chrX 45597373 45597966 -117001964 - L1MB5 LINE L1 -5901 745 185 2249 249 72 77 chrX 45597994 45599186 -117000744 + L1M4 LINE L1 2174 3359 -2787 4648 111 3 1 chrX 45599186 45599886 -117000044 - L1MA4A LINE L1 -7 6296 5596 2249 249 72 77 chrX 45599886 45600252 -116999678 + L1M4 LINE L1 3359 3725 -2421 473 245 87 96 chrX 45600395 45600592 -116999338 + L1M4b LINE L1 19 520 -6335 325 287 122 44 chrX 45600601 45600782 -116999148 - L2 LINE L2 -919 2395 2201 733 291 73 67 chrX 45601558 45602009 -116997921 + LTR67 LTR ERVL 104 557 0 26 0 0 0 chrX 45602023 45602049 -116997881 + AT_rich Low_complexity Low_complexity 1 26 0 7593 200 62 73 chrX 45602403 45603615 -116996315 - MER31B-int LTR ERV1 -2464 2472 1248 1770 129 3 93 chrX 45603615 45603925 -116996005 - AluJb SINE Alu -30 282 1 7593 200 62 73 chrX 45603925 45604836 -116995094 - MER31B-int LTR ERV1 -3688 1248 410 3849 185 35 1 chrX 45604836 45605544 -116994386 - MER44D DNA MER2_type -1 604 1 7593 200 62 73 chrX 45605544 45605936 -116993994 - MER31B-int LTR ERV1 -4526 410 15 1533 188 103 49 chrX 45605986 45606428 -116993502 - MER31B LTR ERV1 0 543 1 39798 63 4 2 chrX 45606742 45612487 -116987443 - L1P2 LINE L1 -397 5758 1 794 191 114 61 chrX 45612527 45612773 -116987157 + MER66A LTR ERV1 220 478 0 348 293 70 10 chrX 45612777 45613055 -116986875 + L1MC5 LINE L1 7261 7495 -546 249 284 14 33 chrX 45613095 45613306 -116986624 + L1MC5 LINE L1 7509 7715 -246 * 4903 169 22 12 chrX 45613296 45613625 -116986305 + L1PB4 LINE L1 4220 4544 -1612 2295 113 3 0 chrX 45613625 45614106 -116985824 + AluSp SINE Alu 1 482 0 4903 169 22 12 chrX 45614106 45615689 -116984241 + L1PB4 LINE L1 4544 6151 -5 212 256 0 0 chrX 45616955 45616998 -116982932 + polypurine Low_complexity Low_complexity 5 47 0 334 357 32 36 chrX 45617082 45617362 -116982568 - L2 LINE L2 -470 2844 2566 2241 78 7 3 chrX 45617383 45617697 -116982233 + AluSp SINE Alu 1 315 0 1783 176 116 17 chrX 45617704 45618187 -116981743 + L1MA9 LINE L1 4432 4962 -1184 * 1912 174 103 74 chrX 45618163 45618773 -116981157 + L1MA9 LINE L1 5651 6278 -34 23 0 0 0 chrX 45618842 45618865 -116981065 + AT_rich Low_complexity Low_complexity 1 23 0 2319 78 3 3 chrX 45619023 45619319 -116980611 + AluSp SINE Alu 1 296 -17 266 192 96 0 chrX 45619522 45619574 -116980356 - L2 LINE L2 -3 3310 3254 317 226 0 0 chrX 45619768 45619830 -116980100 - MIR SINE MIR -92 170 109 1946 166 78 14 chrX 45619936 45620369 -116979561 - L1MC2 LINE L1 0 6344 5884 2172 120 0 7 chrX 45620371 45620680 -116979250 - AluSc SINE Alu -2 307 1 344 22 22 0 chrX 45620693 45620738 -116979192 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 39798 42 23 2 chrX 45620738 45626747 -116973183 - L1PA3 LINE L1 -13 6142 2 6989 221 75 36 chrX 45626740 45626898 -116973032 - L1MC2 LINE L1 -445 5899 5749 * 2318 151 28 35 chrX 45626898 45627001 -116972929 + MSTC LTR MaLR 1 103 -325 1945 173 0 3 chrX 45627001 45627302 -116972628 + AluSg SINE Alu 1 300 -10 2318 151 28 35 chrX 45627302 45627629 -116972301 + MSTC LTR MaLR 103 428 0 6989 221 75 36 chrX 45627629 45629848 -116970082 - L1MC2 LINE L1 -595 5749 3359 7330 35 6 0 chrX 45629848 45631523 -116968407 + L1PA5 LINE L1 4447 6141 -13 6989 221 75 36 chrX 45631523 45632330 -116967600 - L1MC2 LINE L1 -2985 3359 2585 251 253 32 0 chrX 45633948 45634043 -116965887 - L1ME LINE L1 -298 5823 5726 1382 80 0 6 chrX 45635320 45635496 -116964434 + AluSg/x SINE Alu 122 296 -16 273 276 61 20 chrX 45635948 45636046 -116963884 - L2 LINE L2 -30 3283 3182 309 261 18 54 chrX 45636106 45636217 -116963713 + MIR SINE MIR 69 175 -87 415 411 44 35 chrX 45637038 45637376 -116962554 - L2 LINE L2 -38 3234 2894 208 349 151 0 chrX 45637414 45637540 -116962390 + L2 LINE L2 3167 3311 -2 1937 211 39 46 chrX 45638207 45638739 -116961191 + MER63C DNA MER1_type 253 830 -231 2432 68 0 3 chrX 45638739 45639046 -116960884 - AluY SINE Alu -5 306 1 1937 211 39 46 chrX 45639046 45639148 -116960782 + MER63C DNA MER1_type 830 931 0 333 206 29 0 chrX 45639539 45639641 -116960289 + GA-rich Low_complexity Low_complexity 1 105 0 241 246 0 43 chrX 45639773 45639842 -116960088 + MIR SINE MIR 176 241 -21 * 529 260 32 19 chrX 45639840 45639994 -116959936 + MIR SINE MIR 33 188 -74 287 305 42 17 chrX 45640382 45640500 -116959430 - MIR SINE MIR -71 191 71 182 437 42 0 chrX 45640592 45640711 -116959219 + L2 LINE L2 3139 3262 -10 423 236 12 103 chrX 45641109 45641274 -116958656 + L2 LINE L2 3162 3311 -2 184 302 69 43 chrX 45641403 45641519 -116958411 + MIR SINE MIR 19 137 -125 546 285 0 33 chrX 45641550 45641701 -116958229 - L2 LINE L2 0 3272 3127 264 292 66 59 chrX 45642280 45642449 -116957481 - MIR SINE MIR -37 171 2 186 245 53 75 chrX 45643823 45643917 -116956013 + L2 LINE L2 3143 3234 -38 32 81 0 0 chrX 45644143 45644217 -116955713 + AT_rich Low_complexity Low_complexity 1 74 0 23 54 0 0 chrX 45644225 45644262 -116955668 + AT_rich Low_complexity Low_complexity 1 37 0 431 261 97 34 chrX 45644275 45644451 -116955479 - MIR SINE MIR -48 214 28 294 235 71 55 chrX 45645735 45645854 -116954076 + MIR SINE MIR 1 112 -96 236 304 0 0 chrX 45645855 45645911 -116954019 - L2 LINE L2 0 3313 3258 * 270 148 98 0 chrX 45645899 45645960 -116953970 + MIR SINE MIR 98 164 -98 211 309 138 32 chrX 45646072 45646195 -116953735 + L2 LINE L2 3137 3272 0 497 281 57 0 chrX 45647063 45647291 -116952639 + MER113 DNA MER1_type? 6 246 -275 502 269 7 7 chrX 45648386 45648527 -116951403 + MLT2F LTR ERVL 1 141 -522 680 219 38 22 chrX 45648531 45648714 -116951216 + MLT1E3 LTR MaLR 46 231 -393 466 249 53 112 chrX 45648547 45648921 -116951009 + MLT2C1 LTR ERVL 44 395 -2 * 2414 77 3 0 chrX 45648990 45649288 -116950642 - AluSg SINE Alu -11 299 1 268 288 45 45 chrX 45649749 45649881 -116950049 - L2 LINE L2 -227 3045 2914 226 297 32 19 chrX 45650393 45650548 -116949382 - L1ME LINE L1 -233 5888 5732 250 247 0 25 chrX 45650559 45650640 -116949290 + L1MC4a LINE L1 5860 5938 -1870 216 109 65 22 chrX 45651436 45651482 -116948448 + GA-rich Low_complexity Low_complexity 1 48 0 645 253 83 75 chrX 45651604 45651762 -116948168 + MIR SINE MIR 1 156 -106 2980 104 9 2 chrX 45651762 45652193 -116947737 + MER57B LTR ERV1 1 434 0 645 253 83 75 chrX 45652193 45652209 -116947721 + MIR SINE MIR 156 170 -92 2264 81 10 0 chrX 45652209 45652504 -116947426 + AluSx SINE Alu 1 298 -14 645 253 83 75 chrX 45652504 45652581 -116947349 + MIR SINE MIR 170 255 -7 21 0 0 0 chrX 45652828 45652849 -116947081 + AT_rich Low_complexity Low_complexity 1 21 0 2130 122 10 0 chrX 45652992 45653286 -116946644 - AluSx SINE Alu -15 297 1 24 32 0 0 chrX 45653669 45653700 -116946230 + AT_rich Low_complexity Low_complexity 1 31 0 2369 89 0 0 chrX 45654368 45654660 -116945270 - AluSg SINE Alu -18 292 1 291 323 16 8 chrX 45654665 45654792 -116945138 + L1ME LINE L1 332 459 -5611 226 305 10 61 chrX 45654894 45655091 -116944839 + L1ME LINE L1 467 653 -5417 23 0 0 0 chrX 45655258 45655281 -116944649 + AT_rich Low_complexity Low_complexity 1 23 0 7168 95 16 19 chrX 45655281 45656460 -116943470 - MER61-int LTR ERV1 -2649 2568 1393 1872 111 12 43 chrX 45656465 45656709 -116943221 - MER61-int LTR ERV1 -3945 1272 1022 2075 144 0 0 chrX 45656709 45657001 -116942929 + AluSg SINE Alu 1 292 -18 2277 106 30 0 chrX 45657003 45657305 -116942625 + AluSp SINE Alu 2 312 -1 1872 111 12 43 chrX 45657305 45657382 -116942548 - MER61-int LTR ERV1 -4196 1021 958 592 85 0 11 chrX 45657382 45657476 -116942454 - MER61-int LTR ERV1 -4377 840 748 279 271 0 0 chrX 45657477 45657547 -116942383 - tRNA-Glu-GAG tRNA tRNA -5 70 1 580 264 23 29 chrX 45657547 45657721 -116942209 - MER61B-int LTR ERV1 -4864 353 181 692 102 8 34 chrX 45657750 45657868 -116942062 - MER61B-int LTR ERV1 -5102 115 1 1413 171 148 39 chrX 45657876 45658233 -116941697 - MER61B LTR ERV1 -29 396 1 220 336 131 8 chrX 45658545 45658667 -116941263 - MIR SINE MIR -106 156 20 1244 199 8 17 chrX 45659070 45659311 -116940619 + MER8 DNA MER2_type 1 239 0 1990 163 0 0 chrX 45659539 45659834 -116940096 + AluJb SINE Alu 1 295 -17 476 335 45 51 chrX 45660421 45660773 -116939157 + L1M4 LINE L1 4061 4410 -1736 260 125 0 36 chrX 45661162 45661218 -116938712 + L1M4 LINE L1 4580 4633 -1513 246 241 139 0 chrX 45661527 45661606 -116938324 - MIR SINE MIR 0 262 173 2076 131 0 3 chrX 45661850 45662155 -116937775 - AluSc SINE Alu 0 304 1 313 313 0 0 chrX 45662215 45662298 -116937632 + MIR SINE MIR 45 127 -135 276 328 55 16 chrX 45662700 45662828 -116937102 - L2 LINE L2 -19 3294 3162 244 241 0 0 chrX 45663623 45663681 -116936249 + L2 LINE L2 3256 3313 0 209 400 0 29 chrX 45663664 45663734 -116936196 + L2 LINE L2 3119 3186 -86 * 186 345 179 0 chrX 45663917 45664001 -116935929 + L2 LINE L2 3142 3240 -32 406 314 124 5 chrX 45664234 45664419 -116935511 - MIR SINE MIR -16 246 40 3253 108 6 12 chrX 45665248 45665747 -116934183 + MER39B LTR ERV1 158 653 0 302 288 72 32 chrX 45665759 45665884 -116934046 - MIR SINE MIR -41 221 92 295 191 94 30 chrX 45666184 45666327 -116933603 + LTR48 LTR ERV1 449 737 -49 1874 146 3 94 chrX 45666399 45666770 -116933160 - MER1B DNA MER1_type 0 337 1 237 163 143 0 chrX 45667098 45667147 -116932783 + MIR SINE MIR 93 148 -114 24 32 0 0 chrX 45667333 45667364 -116932566 + AT_rich Low_complexity Low_complexity 1 31 0 327 308 38 25 chrX 45667888 45668099 -116931831 - MIR SINE MIR -1 261 53 289 210 31 46 chrX 45668105 45668225 -116931705 + MER63 DNA MER1_type 2 743 -93 331 268 62 39 chrX 45668264 45668280 -116931650 + MIR SINE MIR 74 88 -174 2203 179 0 3 chrX 45668280 45668644 -116931286 + MLT1A1 LTR MaLR 3 365 0 331 268 62 39 chrX 45668644 45668806 -116931124 + MIR SINE MIR 88 256 -6 3345 42 10 2 chrX 45669480 45669890 -116930040 + L1PA5 LINE L1 5737 6149 -5 324 206 205 25 chrX 45669945 45670072 -116929858 - MER41B LTR ERV1 -294 341 97 415 286 26 28 chrX 45670181 45670463 -116929467 - L1MC4 LINE L1 -725 7236 7001 200 182 0 0 chrX 45670495 45670528 -116929402 + CT-rich Low_complexity Low_complexity 2 34 0 903 231 64 25 chrX 45670539 45670820 -116929110 - L1MC4 LINE L1 -982 7060 6769 4093 212 98 57 chrX 45670840 45671148 -116928782 - L1MD2 LINE L1 -9 6350 6056 983 24 60 0 chrX 45671148 45671315 -116928615 + (TA)n Simple_repeat Simple_repeat 1 177 0 4093 212 98 57 chrX 45671315 45672230 -116927700 - L1MD2 LINE L1 -303 6056 5179 1939 145 0 3 chrX 45672230 45672519 -116927411 - AluJb SINE Alu -24 288 1 4093 212 98 57 chrX 45672519 45673110 -116926820 - L1MD2 LINE L1 -1180 5179 4613 1154 211 47 76 chrX 45673110 45673493 -116926437 - MLT1A2 LTR MaLR -2 372 1 4093 212 98 57 chrX 45673493 45674551 -116925379 - L1MD2 LINE L1 -1746 4613 3336 2347 68 3 7 chrX 45674551 45674884 -116925046 - AluSp SINE Alu 0 313 1 4093 212 98 57 chrX 45674884 45675095 -116924835 - L1MD2 LINE L1 -3023 3336 3135 1612 113 0 13 chrX 45675095 45675326 -116924604 - AluSg/x SINE Alu -3 307 80 957 248 43 26 chrX 45675427 45675572 -116924358 - L1M1 LINE L1 -7246 319 178 536 117 0 0 chrX 45675572 45675649 -116924281 - MADE1 DNA Mariner 0 80 4 957 248 43 26 chrX 45675649 45675806 -116924124 - L1M1 LINE L1 -7387 178 12 * 5089 230 36 10 chrX 45675791 45679103 -116920827 - L1 LINE L1 -2877 3451 71 771 282 126 66 chrX 45679235 45679926 -116920004 - L1M4 LINE L1 -913 5233 4492 2216 120 0 10 chrX 45679926 45680227 -116919703 - AluSx SINE Alu -14 298 1 771 282 126 66 chrX 45680227 45680290 -116919640 - L1M4 LINE L1 -1654 4492 4434 1110 314 21 33 chrX 45680952 45681465 -116918465 - HERV16 LTR ERVL -3428 1568 1062 320 328 14 141 chrX 45681465 45681892 -116918038 + L2 LINE L2 2838 3210 -62 24 32 0 0 chrX 45682267 45682298 -116917632 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chrX 45683565 45683587 -116916343 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1266 254 8 22 chrX 45684629 45685031 -116914899 + L1ME LINE L1 5380 5775 -395 1388 142 0 9 chrX 45686230 45686441 -116913489 - AluJb SINE Alu -17 295 87 3234 150 8 29 chrX 45686689 45687277 -116912653 + L1PA16 LINE L1 5588 6163 -3 2217 68 50 0 chrX 45687373 45687654 -116912276 - AluY SINE Alu -16 295 1 487 251 13 27 chrX 45687834 45688078 -116911852 - LTR40a LTR ERVL -116 403 124 399 330 58 49 chrX 45688335 45688784 -116911146 + L1M4 LINE L1 4071 4523 -1623 252 0 0 0 chrX 45689046 45689074 -116910856 + (CA)n Simple_repeat Simple_repeat 1 28 0 1958 224 54 18 chrX 45690286 45690835 -116909095 - MER77 LTR ERV1 -4 601 54 676 194 52 19 chrX 45693328 45693483 -116906447 + MLT1A2 LTR MaLR 2 161 -213 219 69 0 0 chrX 45695032 45695061 -116904869 + (T)n Simple_repeat Simple_repeat 1 29 0 320 330 113 16 chrX 45697204 45697398 -116902532 - L1MC4 LINE L1 -420 7622 7410 216 293 111 30 chrX 45697403 45697601 -116902329 + L2 LINE L2 2647 2860 -454 207 139 0 0 chrX 45697997 45698033 -116901897 + (TG)n Simple_repeat Simple_repeat 2 37 0 2347 95 0 0 chrX 45698485 45698780 -116901150 - AluY SINE Alu -16 295 1 2693 157 46 14 chrX 45698780 45699337 -116900593 + LTR49 LTR ERV1 18 595 0 3628 171 75 18 chrX 45699338 45700076 -116899854 + LTR49-int LTR ERV1 1 780 -5551 2268 157 74 36 chrX 45700217 45700421 -116899509 + LTR49-int LTR ERV1 782 977 -5354 4232 52 2 0 chrX 45700421 45700972 -116898958 + L1PA7 LINE L1 5618 6169 0 2268 157 74 36 chrX 45700972 45701294 -116898636 + LTR49-int LTR ERV1 977 1329 -5002 1148 200 20 54 chrX 45701304 45701599 -116898331 + LTR49-int LTR ERV1 1982 2266 -2614 516 285 45 58 chrX 45701643 45701885 -116898045 + LTR49-int LTR ERV1 1865 2303 -3643 467 202 48 58 chrX 45701895 45702099 -116897831 + LTR49-int LTR ERV1 1150 3129 -3202 * 647 247 41 26 chrX 45702056 45702327 -116897603 + LTR57-int LTR ERVL 1236 1510 -3833 245 108 0 0 chrX 45702550 45702587 -116897343 + LTR49 LTR ERV1 175 211 -384 1960 187 78 2 chrX 45702933 45703329 -116896601 + MSTB LTR MaLR 1 426 0 2112 178 83 4 chrX 45703559 45704038 -116895892 + L1MB3 LINE L1 5639 6155 -28 1398 194 42 8 chrX 45704059 45704365 -116895565 + L1MB5 LINE L1 5817 6132 -48 2330 75 3 0 chrX 45704365 45704667 -116895263 + L1PA8 LINE L1 5858 6163 -9 1398 194 42 8 chrX 45704667 45704703 -116895227 + L1MB5 LINE L1 6132 6165 -15 1484 231 63 43 chrX 45705275 45705764 -116894166 - MER21B LTR ERV1 -48 815 317 4053 179 33 48 chrX 45706805 45707773 -116892157 - LTR13 LTR ERVK 0 954 1 1781 200 49 92 chrX 45708611 45709186 -116890744 - MLT2B3 LTR ERVL 0 554 5 22 35 0 0 chrX 45710175 45710204 -116889726 + AT_rich Low_complexity Low_complexity 1 29 0 386 301 59 0 chrX 45710442 45710681 -116889249 - L1ME3A LINE L1 -223 5947 5695 919 180 101 0 chrX 45710724 45710952 -116888978 + Tigger6 DNA MER2_type 1347 1597 0 349 301 6 26 chrX 45711022 45711178 -116888752 - L1ME3A LINE L1 -1501 4645 4493 394 154 0 0 chrX 45711211 45711276 -116888654 - MLT1C-int LTR MaLR -1306 65 1 1707 180 123 26 chrX 45711277 45711700 -116888230 - MLT1C LTR MaLR -3 464 1 404 269 24 42 chrX 45711783 45711950 -116887980 + LTR41 LTR ERVL 9 172 -601 280 174 43 29 chrX 45712615 45712684 -116887246 + LTR41 LTR ERVL 695 764 -9 675 314 110 15 chrX 45712833 45713689 -116886241 - L1ME3A LINE L1 -1878 4268 3332 478 238 116 53 chrX 45713934 45714237 -116885693 - L1M4 LINE L1 -1426 4720 4399 1057 313 12 26 chrX 45714374 45714802 -116885128 + L1M3a LINE L1 1 422 -5533 339 274 55 38 chrX 45715021 45715312 -116884618 + L1M3a LINE L1 317 704 -5251 239 364 6 12 chrX 45715297 45715459 -116884471 + L1M3a LINE L1 544 704 -5251 * 2285 279 35 36 chrX 45715441 45716402 -116883528 + L1MA7 LINE L1 302 1175 -4780 820 206 39 26 chrX 45716400 45716633 -116883297 + L1MA7 LINE L1 2016 2251 -3783 * 3208 180 13 14 chrX 45716637 45717327 -116882603 + L1MA7 LINE L1 3670 4358 -1676 * 4691 140 35 55 chrX 45717295 45718615 -116881315 + L1MA7 LINE L1 4888 6175 -4 327 285 33 40 chrX 45719125 45719276 -116880654 + L1ME2 LINE L1 5734 5883 -281 316 306 52 47 chrX 45719385 45719578 -116880352 + L1MC4a LINE L1 5860 6053 -1755 362 274 33 75 chrX 45719666 45719878 -116880052 + HAL1b LINE L1 1109 1311 -37 326 297 65 31 chrX 45720108 45720337 -116879593 + L1 LINE L1 4020 4256 -1890 572 117 48 0 chrX 45720346 45720449 -116879481 - L1MA9 LINE L1 0 7731 7624 2480 141 39 5 chrX 45720449 45720861 -116879069 - MSTB LTR MaLR 0 426 1 8734 158 33 16 chrX 45720874 45722484 -116877446 - MSTB-int LTR MaLR -14 1637 1 2404 158 39 5 chrX 45722484 45722896 -116877034 - MSTB LTR MaLR 0 426 1 4065 160 42 23 chrX 45722896 45722941 -116876989 - L1MA9 LINE L1 -103 7628 7585 186 43 0 0 chrX 45722941 45722964 -116876966 + (TG)n Simple_repeat Simple_repeat 2 24 0 4065 160 42 23 chrX 45722964 45723365 -116876565 - L1MA9 LINE L1 -146 7585 7193 1465 191 44 44 chrX 45723365 45723706 -116876224 - MER2 DNA MER2_type -2 342 2 4065 160 42 23 chrX 45723706 45724115 -116875815 - L1MA9 LINE L1 -538 7193 6756 1944 154 73 18 chrX 45724139 45724482 -116875448 - THE1B LTR MaLR -2 362 1 11443 88 17 8 chrX 45724483 45726048 -116873882 - THE1B-int LTR MaLR -1 1579 1 559 147 0 11 chrX 45726048 45726143 -116873787 - THE1B LTR MaLR 0 375 282 378 0 0 21 chrX 45726128 45726176 -116873754 - THE1C LTR MaLR -328 47 1 * 2487 184 90 8 chrX 45726176 45726786 -116873144 - L1MA9 LINE L1 -811 6754 6095 263 175 0 0 chrX 45726839 45726902 -116873028 - L1MA9 LINE L1 -1826 5739 5677 699 226 0 0 chrX 45726921 45727054 -116872876 + FLAM_C SINE Alu 1 133 0 3015 250 47 24 chrX 45727079 45728508 -116871422 - L1MA9 LINE L1 -2928 4637 3157 2001 154 3 0 chrX 45728508 45728801 -116871129 - AluSx SINE Alu -16 296 3 3015 250 47 24 chrX 45728801 45729171 -116870759 - L1MA9 LINE L1 -4408 3157 2797 4457 178 26 31 chrX 45729258 45730358 -116869572 + L1 LINE L1 4302 5396 -750 * 8160 43 20 2 chrX 45730353 45730448 -116869482 - L1PA14 LINE L1 -1034 5112 5020 6060 88 16 15 chrX 45730448 45730809 -116869121 + L1PA14 LINE L1 5130 5489 -672 2296 101 0 3 chrX 45730809 45731107 -116868823 + AluY SINE Alu 1 297 -14 6060 88 16 15 chrX 45731107 45731776 -116868154 + L1PA14 LINE L1 5489 6161 0 8160 43 20 2 chrX 45731776 45732758 -116867172 - L1PA3 LINE L1 -1126 5020 4015 7807 19 0 0 chrX 45732759 45733925 -116866005 + L1PA3 LINE L1 4990 6155 0 2070 232 98 42 chrX 45733932 45734803 -116865127 + L1ME LINE L1 1631 2455 -4085 2507 60 3 0 chrX 45734803 45735104 -116864826 + AluY SINE Alu 1 302 -9 2070 232 98 42 chrX 45735104 45735312 -116864618 + L1ME LINE L1 2455 2650 -3890 2441 124 0 16 chrX 45735348 45735718 -116864212 + THE1B LTR MaLR 1 364 0 10229 98 49 38 chrX 45735718 45737282 -116862648 + THE1B-int LTR MaLR 1 1580 0 2119 130 28 14 chrX 45737282 45737635 -116862295 + THE1B LTR MaLR 1 358 -6 541 178 116 39 chrX 45737648 45737777 -116862153 + MSTD LTR MaLR 258 396 0 349 325 136 53 chrX 45737847 45738281 -116861649 + L1M4 LINE L1 3769 4238 -1908 23 33 0 0 chrX 45739190 45739220 -116860710 + AT_rich Low_complexity Low_complexity 1 30 0 1785 160 0 42 chrX 45739541 45739847 -116860083 - AluJb SINE Alu -19 293 1 338 284 32 6 chrX 45739874 45740056 -116859874 + HAL1b LINE L1 339 1606 -827 1030 154 6 0 chrX 45740137 45740319 -116859611 - L1MB1 LINE L1 -1 6167 5985 1738 175 21 16 chrX 45740325 45740702 -116859228 - L1MB1 LINE L1 -232 5936 5558 1309 177 7 4 chrX 45740715 45741088 -116858842 + L1M3 LINE L1 5118 5492 -676 371 180 11 11 chrX 45741089 45741178 -116858752 + L1ME LINE L1 3033 3121 -3419 303 213 7 53 chrX 45741527 45741677 -116858253 - L1MC5 LINE L1 -184 7777 7635 7575 24 5 0 chrX 45742256 45743629 -116856301 + L1PA4 LINE L1 4771 6147 -8 921 223 14 105 chrX 45743812 45743957 -116855973 + L1ME LINE L1 5736 5893 -671 2178 113 10 0 chrX 45743957 45744259 -116855671 + AluY SINE Alu 1 305 -6 921 223 14 105 chrX 45744259 45744476 -116855454 + L1ME LINE L1 5893 6065 -499 334 302 39 82 chrX 45745079 45745336 -116854594 + L2 LINE L2 2743 3009 -304 219 234 32 75 chrX 45745480 45745574 -116854356 + L2 LINE L2 3178 3267 -5 404 277 80 100 chrX 45746088 45746199 -116853731 + L2 LINE L2 2815 2927 -386 9965 172 25 25 chrX 45746199 45747588 -116852342 - L1PA14 LINE L1 -17 6144 4758 2128 133 3 0 chrX 45747588 45747897 -116852033 - AluSx SINE Alu -2 310 1 9965 172 25 25 chrX 45747897 45749393 -116850537 - L1PA14 LINE L1 -1403 4758 3243 404 277 80 100 chrX 45749393 45749692 -116850238 + L2 LINE L2 2927 3217 -96 460 353 92 28 chrX 45750034 45750065 -116849865 + L2 LINE L2 2633 2661 -653 3156 44 7 7 chrX 45750065 45750471 -116849459 + L1PA7 LINE L1 5749 6154 0 460 353 92 28 chrX 45750471 45750756 -116849174 + L2 LINE L2 2661 2969 -345 213 277 15 31 chrX 45750897 45750962 -116848968 + L2 LINE L2 3208 3271 -1 204 339 0 9 chrX 45751126 45751238 -116848692 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 265 226 9 9 chrX 45751252 45751358 -116848572 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 442 339 6 0 chrX 45751435 45751612 -116848318 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 305 224 8 67 chrX 45752581 45752715 -116847215 + CT-rich Low_complexity Low_complexity 4 129 0 326 185 23 31 chrX 45752728 45752858 -116847072 + CT-rich Low_complexity Low_complexity 5 133 0 1644 130 0 16 chrX 45753332 45753586 -116846344 - MER1B DNA MER1_type -89 250 1 281 309 72 10 chrX 45753874 45754068 -116845862 - L1ME LINE L1 -419 5702 5497 301 345 28 14 chrX 45754084 45754226 -116845704 - MIR SINE MIR -101 161 18 2187 110 44 47 chrX 45754790 45755155 -116844775 - THE1B LTR MaLR 0 364 1 546 318 43 35 chrX 45755863 45756118 -116843812 + MIR SINE MIR 2 258 -4 3751 31 0 0 chrX 45756806 45757287 -116842643 - L1PA4 LINE L1 -794 5352 4872 6871 21 0 1 chrX 45757287 45758122 -116841808 + L1PA4 LINE L1 5355 6155 0 1439 176 16 64 chrX 45758253 45758629 -116841301 - LTR49-int LTR ERV1 -3307 3024 2667 371 159 0 0 chrX 45758629 45758698 -116841232 - L1PA16 LINE L1 -5 6161 6093 232 297 102 31 chrX 45758966 45759094 -116840836 - L2 LINE L2 -10 3303 3167 196 287 178 16 chrX 45759148 45759277 -116840653 - MIR SINE MIR -82 180 31 196 222 22 0 chrX 45759984 45760029 -116839901 + MIR SINE MIR 67 112 -150 28 0 0 0 chrX 45760159 45760187 -116839743 + AT_rich Low_complexity Low_complexity 1 28 0 2095 66 103 0 chrX 45760837 45761108 -116838822 + AluSp SINE Alu 1 299 -14 402 273 142 6 chrX 45761429 45761612 -116838318 + LTR40c LTR ERVL 152 359 -106 565 253 86 0 chrX 45762126 45762288 -116837642 - MIR SINE MIR -22 240 65 26 50 0 0 chrX 45762494 45762534 -116837396 + AT_rich Low_complexity Low_complexity 1 40 0 256 293 29 29 chrX 45762857 45762997 -116836933 + L2 LINE L2 2839 2978 -294 2138 181 56 52 chrX 45763419 45763917 -116836013 + MLT1D LTR MaLR 5 504 -1 661 118 31 16 chrX 45763918 45764045 -116835885 + MLT1D-int LTR MaLR 1 129 -1242 276 267 23 0 chrX 45764049 45764135 -116835795 + MLT1D-int LTR MaLR 1260 1347 -24 1716 177 79 48 chrX 45764139 45764557 -116835373 + MLT1D LTR MaLR 1 431 -74 22 0 0 0 chrX 45764931 45764953 -116834977 + AT_rich Low_complexity Low_complexity 1 22 0 2324 173 11 11 chrX 45765116 45765556 -116834374 + L1M1 LINE L1 2 441 -6768 11985 211 43 40 chrX 45765609 45767443 -116832487 + L1M1 LINE L1 1231 3057 -4308 1774 179 0 52 chrX 45767443 45767767 -116832163 + AluJo SINE Alu 3 309 -3 11985 211 43 40 chrX 45767767 45769946 -116829984 + L1M1 LINE L1 3057 5227 -2138 786 154 31 8 chrX 45769946 45770076 -116829854 - FLAM_C SINE Alu 0 133 1 11985 211 43 40 chrX 45770076 45770575 -116829355 + L1M1 LINE L1 5227 5723 -1642 569 157 0 22 chrX 45770575 45770664 -116829266 + AluS SINE Alu 2 88 -225 11985 211 43 40 chrX 45770664 45771603 -116828327 + L1M1 LINE L1 5723 6867 -498 1458 173 83 0 chrX 45771603 45771881 -116828049 + MSTB LTR MaLR 1 301 -125 1666 195 96 6 chrX 45771883 45772247 -116827683 - MSTB LTR MaLR -29 397 1 3924 217 71 4 chrX 45772251 45773168 -116826762 - L1M2 LINE L1 -5093 1756 779 2125 223 23 19 chrX 45773295 45773708 -116826222 - L1M2 LINE L1 -6362 487 70 2181 139 19 14 chrX 45773708 45774068 -116825862 + THE1B LTR MaLR 1 362 -2 2125 223 23 19 chrX 45774068 45774139 -116825791 - L1M2 LINE L1 -6779 70 1 * 11907 197 40 12 chrX 45774129 45775958 -116823972 + L1MA9 LINE L1 2121 3898 -2414 17244 29 0 1 chrX 45775958 45778797 -116821133 + L1PA3 LINE L1 3319 6155 0 11907 197 40 12 chrX 45778797 45781036 -116818894 + L1MA9 LINE L1 3898 6312 0 1670 257 206 9 chrX 45781038 45781922 -116818008 - L1MEc LINE L1 -1578 4637 3580 198 0 0 0 chrX 45781922 45781944 -116817986 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6281 26 0 3 chrX 45781944 45782720 -116817210 - L1PA3 LINE L1 -18 6137 5364 1852 259 85 30 chrX 45782715 45783205 -116816725 - L1MEc LINE L1 -2636 3579 3117 * 243 0 0 0 chrX 45783205 45783232 -116816698 + (TA)n Simple_repeat Simple_repeat 2 28 0 2232 79 0 4 chrX 45783231 45783538 -116816392 - AluSc SINE Alu 0 306 1 1852 259 85 30 chrX 45783538 45784041 -116815889 - L1MEc LINE L1 -3404 2811 2530 646 282 50 31 chrX 45784068 45784525 -116815405 - L1MEc LINE L1 -4706 1690 1225 2477 288 56 7 chrX 45784527 45785506 -116814424 - L1MEc LINE L1 -5223 1173 147 189 267 100 44 chrX 45785512 45785602 -116814328 + L2 LINE L2 3149 3243 -70 180 280 64 56 chrX 45785640 45785765 -116814165 - MIR SINE MIR -72 190 65 352 291 39 0 chrX 45787089 45787192 -116812738 - L2 LINE L2 -30 3242 3136 239 246 0 0 chrX 45787662 45787723 -116812207 - L2 LINE L2 -56 3257 3197 11361 22 0 0 chrX 45788797 45790897 -116809033 - L1PA3 LINE L1 -4 6151 4063 911 212 24 9 chrX 45791035 45791247 -116808683 + L1M4 LINE L1 4 218 -6324 * 1425 193 14 14 chrX 45791240 45791597 -116808333 + L1M4 LINE L1 1011 1367 -5175 * 30181 35 4 2 chrX 45791596 45797666 -116802264 + L1PA3 LINE L1 74 6155 0 1752 219 67 43 chrX 45797643 45798290 -116801640 + L1M4 LINE L1 826 1487 -4661 * 846 286 47 20 chrX 45798313 45798865 -116801065 + L1M4 LINE L1 2180 2746 -3900 277 284 0 0 chrX 45798898 45798993 -116800937 + L1M4 LINE L1 4617 4711 -1435 1914 238 7 2 chrX 45799045 45799588 -116800342 + L1M4 LINE L1 2752 3297 -3347 * 4079 214 34 19 chrX 45799582 45801351 -116798579 + L1M4 LINE L1 4500 6290 -392 1369 210 70 21 chrX 45801353 45801738 -116798192 - LTR52 LTR ERVL -5 416 13 1152 209 173 9 chrX 45801775 45802333 -116797597 + LTR50 LTR ERVL 4 751 -44 3349 199 68 2 chrX 45802382 45803432 -116796498 - LTR52-int LTR ERVL -23 3533 2368 1815 183 6 11 chrX 45803437 45803786 -116796144 + MLT2C1 LTR ERVL 3 349 -48 389 217 0 17 chrX 45803805 45803920 -116796010 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 35 0 0 0 chrX 45803942 45803977 -116795953 + AT_rich Low_complexity Low_complexity 1 35 0 384 22 0 0 chrX 45803989 45804034 -116795896 + (CA)n Simple_repeat Simple_repeat 2 46 0 1816 190 20 11 chrX 45804035 45804387 -116795543 - LTR52-int LTR ERVL -1656 1900 1546 893 206 59 9 chrX 45804595 45804814 -116795116 - LTR52-int LTR ERVL -1999 1557 1328 269 149 21 0 chrX 45804911 45804958 -116794972 + LTR52-int LTR ERVL 1348 1395 -2161 53 17 0 0 chrX 45804981 45805041 -116794889 + AT_rich Low_complexity Low_complexity 1 60 0 771 95 29 0 chrX 45805068 45805314 -116794616 + (TA)n Simple_repeat Simple_repeat 1 253 0 3017 67 9 6 chrX 45805314 45805729 -116794201 - MLT2A1 LTR ERVL -34 481 1 1050 179 52 68 chrX 45805729 45806097 -116793833 - LTR52-int LTR ERVL -2218 1338 977 204 40 0 0 chrX 45806097 45806122 -116793808 + (TC)n Simple_repeat Simple_repeat 2 26 0 1064 167 25 10 chrX 45806149 45806347 -116793583 - LTR52-int LTR ERVL -2580 976 776 * 2607 181 41 65 chrX 45806344 45807025 -116792905 - LTR52-int LTR ERVL -2889 667 3 1140 177 164 35 chrX 45807026 45807393 -116792537 - LTR52 LTR ERVL -5 416 3 1845 192 10 16 chrX 45807393 45807779 -116792151 + L1MB7 LINE L1 5787 6170 -14 220 255 234 0 chrX 45807857 45807951 -116791979 + L2 LINE L2 3198 3313 0 265 254 92 49 chrX 45808081 45808223 -116791707 - L1ME4a LINE L1 -28 6093 5946 676 281 18 9 chrX 45808353 45808574 -116791356 - L1ME3A LINE L1 -5 6165 5943 185 0 0 39 chrX 45808728 45808754 -116791176 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 9403 30 0 200 chrX 45808760 45810501 -116789429 + SVA Other Other 1 1400 0 922 254 40 12 chrX 45810549 45810876 -116789054 + L1MDa LINE L1 75 410 -6130 270 288 38 0 chrX 45811220 45811300 -116788630 + L1MDa LINE L1 785 867 -5673 3003 222 76 46 chrX 45811681 45812737 -116787193 + L1MDa LINE L1 847 1870 -4670 801 113 8 0 chrX 45812737 45812870 -116787060 + L1MA4 LINE L1 6156 6289 -11 3003 222 76 46 chrX 45812870 45813268 -116786662 + L1MDa LINE L1 1870 2322 -4218 2220 113 0 0 chrX 45813268 45813559 -116786371 - AluSx SINE Alu -21 291 1 3003 222 76 46 chrX 45813559 45813758 -116786172 + L1MDa LINE L1 2322 2514 -4026 869 257 50 29 chrX 45813792 45814248 -116785682 - L1M4 LINE L1 -2739 3407 2942 10195 179 53 22 chrX 45814248 45816594 -116783336 - L1MC3 LINE L1 -13 7772 5355 32 43 0 0 chrX 45817623 45817669 -116782261 + AT_rich Low_complexity Low_complexity 1 46 0 189 74 0 0 chrX 45817826 45817853 -116782077 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 216 260 27 0 chrX 45817959 45818032 -116781898 + MIR SINE MIR 188 262 0 341 283 191 7 chrX 45818345 45818497 -116781433 + L2 LINE L2 3130 3309 -4 604 36 12 0 chrX 45818702 45818786 -116781144 - L1PA3 LINE L1 0 6155 6071 * 7409 28 0 0 chrX 45818773 45820418 -116779512 + L1PA6 LINE L1 4511 6154 0 453 267 67 33 chrX 45821368 45821548 -116778382 + MIR SINE MIR 45 230 -32 365 303 55 30 chrX 45822555 45822720 -116777210 + MIR SINE MIR 46 214 -48 222 351 69 23 chrX 45823135 45823266 -116776664 - L2 LINE L2 0 3272 3136 933 235 41 99 chrX 45823268 45823885 -116776045 - L2 LINE L2 0 3313 2737 335 281 100 12 chrX 45824719 45824873 -116775057 - MIR SINE MIR -61 147 2 214 235 204 20 chrX 45825422 45825520 -116774410 + MIR SINE MIR 32 147 -115 6181 40 1 7 chrX 45825925 45826678 -116773252 + L1PA5 LINE L1 5401 6149 -5 3347 84 76 2 chrX 45826678 45827189 -116772741 + L1MA2 LINE L1 5754 6304 0 24 32 0 0 chrX 45827189 45827220 -116772710 + AT_rich Low_complexity Low_complexity 1 31 0 243 269 71 28 chrX 45827284 45827425 -116772505 + MIR SINE MIR 108 254 -8 18921 155 38 40 chrX 45827664 45830118 -116769812 + L1MA3 LINE L1 10 2468 -5097 2123 119 0 0 chrX 45830118 45830421 -116769509 + AluSc SINE Alu 1 303 0 18921 155 38 40 chrX 45830421 45832311 -116767619 + L1MA3 LINE L1 2468 4351 -3214 1982 145 3 10 chrX 45832311 45832607 -116767323 + AluSq SINE Alu 1 294 -19 18921 155 38 40 chrX 45832607 45833023 -116766907 + L1MA3 LINE L1 4351 4766 -2799 1756 195 15 0 chrX 45833019 45833425 -116766505 + L1MA3 LINE L1 6306 6717 -848 * 4269 122 40 4 chrX 45833422 45834153 -116765777 + L1MA3 LINE L1 6942 7698 -26 2067 120 6 32 chrX 45834157 45834473 -116765457 - AluSx SINE Alu -4 308 1 260 302 71 16 chrX 45834499 45834625 -116765305 - MLT1H LTR MaLR -96 453 321 1528 173 126 24 chrX 45834686 45835234 -116764696 + L1ME1 LINE L1 5090 5672 -494 794 125 0 0 chrX 45835236 45835364 -116764566 + MSTB2 LTR MaLR 1 128 -329 16790 196 74 13 chrX 45835364 45839082 -116760848 - L1PA13 LINE L1 -844 5953 1701 1879 138 44 10 chrX 45839082 45839378 -116760552 - AluSx SINE Alu -6 306 1 16790 196 74 13 chrX 45839378 45841189 -116758741 - L1PA13 LINE L1 -5096 1701 1 439 119 0 0 chrX 45841198 45841265 -116758665 + MSTB2 LTR MaLR 391 457 0 1200 248 42 38 chrX 45841285 45841756 -116758174 + L1ME1 LINE L1 5690 6162 -4 306 369 0 6 chrX 45841760 45841920 -116758010 + L1ME1 LINE L1 6007 6165 -1 283 232 0 0 chrX 45842173 45842229 -116757701 - L2 LINE L2 -2 3311 3256 7619 24 2 0 chrX 45842367 45844019 -116755911 + L1PA4 LINE L1 4494 6147 -8 423 282 61 8 chrX 45844716 45844847 -116755083 + L2 LINE L2 3172 3309 -4 328 274 10 39 chrX 45844991 45845093 -116754837 + MIR SINE MIR 37 135 -73 419 291 112 15 chrX 45845138 45845272 -116754658 - L2 LINE L2 -1 3271 3125 261 0 0 0 chrX 45845640 45845669 -116754261 + (TTA)n Simple_repeat Simple_repeat 1 29 0 208 342 71 13 chrX 45845711 45845866 -116754064 - MIR SINE MIR -32 230 67 1181 241 26 3 chrX 45845879 45846186 -116753744 + L1MC4 LINE L1 6774 7087 -955 2198 157 28 41 chrX 45846208 45846780 -116753150 + MLT2A2 LTR ERVL 1 554 0 260 143 0 20 chrX 45846782 45846831 -116753099 + L1MC4 LINE L1 7099 7146 -896 2738 155 43 26 chrX 45846839 45846979 -116752951 + L1MA8 LINE L1 5688 5824 -467 1727 189 3 0 chrX 45846979 45847276 -116752654 + AluJo SINE Alu 3 300 -12 2738 155 43 26 chrX 45847276 45847670 -116752260 + L1MA8 LINE L1 5824 6231 -60 345 285 39 31 chrX 45847679 45847809 -116752121 + MIR SINE MIR 122 252 -10 287 351 18 0 chrX 45848233 45848344 -116751586 - MIR SINE MIR -83 179 67 200 289 99 66 chrX 45848430 45848551 -116751379 + L2 LINE L2 3178 3302 -11 315 0 0 0 chrX 45849338 45849373 -116750557 + (CA)n Simple_repeat Simple_repeat 2 36 0 370 343 106 26 chrX 45849451 45849792 -116750138 + MLT1L LTR MaLR 149 516 -99 3070 286 80 45 chrX 45849818 45851089 -116748841 - L2 LINE L2 -14 3299 1974 2065 116 4 0 chrX 45851089 45851366 -116748564 - AluSq SINE Alu -27 286 9 3070 286 80 45 chrX 45851366 45851734 -116748196 - L2 LINE L2 -1339 1974 1620 204 67 0 0 chrX 45851813 45851843 -116748087 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 232 178 206 0 chrX 45851887 45851960 -116747970 - MER94 DNA DNA -42 92 5 398 327 131 19 chrX 45851966 45852180 -116747750 + MIR SINE MIR 15 252 -10 514 165 11 0 chrX 45852416 45852507 -116747423 + MLT2B1 LTR ERVL 1 92 -428 * 706 228 54 0 chrX 45852506 45852655 -116747275 + MLT1E1 LTR MaLR 498 654 0 246 136 0 0 chrX 45853188 45853232 -116746698 + (TG)n Simple_repeat Simple_repeat 2 45 0 474 272 136 0 chrX 45854476 45854667 -116745263 + MIR SINE MIR 45 261 -1 272 309 55 36 chrX 45855697 45855862 -116744068 + MIR SINE MIR 46 213 -49 209 344 69 23 chrX 45856328 45856459 -116743471 - L2 LINE L2 0 3272 3136 745 255 62 94 chrX 45856461 45857146 -116742784 - L2 LINE L2 0 3313 2635 291 221 168 11 chrX 45857907 45858002 -116741928 - MIR SINE MIR -100 162 53 182 250 0 19 chrX 45858599 45858651 -116741279 + MIR SINE MIR 32 82 -180 539 221 55 180 chrX 45859438 45859944 -116739986 - MLT1H LTR MaLR -5 544 102 2461 164 73 0 chrX 45860151 45860548 -116739382 - MSTA LTR MaLR -2 426 1 1833 86 4 31 chrX 45861038 45861313 -116738617 + AluSg SINE Alu 35 302 0 209 186 0 0 chrX 45863243 45863286 -116736644 + G-rich Low_complexity Low_complexity 1 43 0 2328 65 41 0 chrX 45864535 45864825 -116735105 + AluSg SINE Alu 1 302 -8 263 367 33 8 chrX 45865349 45865469 -116734461 + L2 LINE L2 3107 3229 -43 227 150 0 0 chrX 45865652 45865692 -116734238 + L2 LINE L2 3274 3313 0 202 418 25 0 chrX 45865975 45866097 -116733833 + L2 LINE L2 3136 3260 -12 1881 201 99 48 chrX 45866267 45866316 -116733614 + L1MC5 LINE L1 7249 7294 -667 596 218 100 0 chrX 45866316 45866426 -116733504 + FLAM_A SINE Alu 1 121 -12 1881 201 99 48 chrX 45866426 45867023 -116732907 + L1MC5 LINE L1 7294 7928 -33 2597 48 0 0 chrX 45868011 45868306 -116731624 - AluY SINE Alu -16 295 1 305 282 0 0 chrX 45868432 45868517 -116731413 + MIR SINE MIR 80 164 -98 1709 182 4 0 chrX 45868580 45868860 -116731070 - AluJo SINE Alu -31 281 1 2811 208 37 0 chrX 45869494 45870008 -116729922 - REP3 LTR ERV -29 533 1 1943 204 41 24 chrX 45870065 45870476 -116729454 - LTR52 LTR ERVL -3 418 1 5908 239 42 9 chrX 45870476 45871738 -116728192 - LTR52-int LTR ERVL 0 3556 2253 3736 202 19 47 chrX 45871757 45872677 -116727253 - LTR52-int LTR ERVL -1417 2139 1318 1349 217 30 30 chrX 45872685 45873017 -116726913 - MLT2D LTR ERVL 0 414 83 677 200 97 6 chrX 45873017 45873039 -116726891 - Ricksha DNA DNA -2871 375 338 17059 162 101 75 chrX 45873039 45874389 -116725541 - ERVL-D LTR ERVL 0 5764 4449 2391 109 78 62 chrX 45874389 45874810 -116725120 + MSTC LTR MaLR 1 428 0 17059 162 101 75 chrX 45874810 45875563 -116724367 - ERVL-D LTR ERVL -1315 4449 3716 231 61 0 0 chrX 45875563 45875596 -116724334 + (CA)n Simple_repeat Simple_repeat 2 34 0 17059 162 101 75 chrX 45875596 45875863 -116724067 - ERVL-D LTR ERVL -2048 3716 3457 2238 139 73 14 chrX 45875863 45876207 -116723723 - THE1B LTR MaLR 0 364 1 17059 162 101 75 chrX 45876207 45876313 -116723617 - ERVL-D LTR ERVL -2307 3457 3355 802 206 67 31 chrX 45876313 45876536 -116723394 - L1MA9 LINE L1 -87 6225 5995 17059 162 101 75 chrX 45876536 45877235 -116722695 - ERVL-D LTR ERVL -2409 3355 2675 2487 104 44 14 chrX 45877235 45877599 -116722331 - THE1C LTR MaLR 0 375 1 17059 162 101 75 chrX 45877599 45878186 -116721744 - ERVL-D LTR ERVL -3089 2675 1676 508 186 0 0 chrX 45878186 45878272 -116721658 - MLT1A2 LTR MaLR 0 374 289 524 345 67 66 chrX 45879212 45880453 -116719477 - HERVL40 LTR ERVL -1450 4080 2841 1512 185 60 65 chrX 45880453 45880820 -116719110 + MLT1A1 LTR MaLR 1 365 0 524 345 67 66 chrX 45880820 45881031 -116718899 - HERVL40 LTR ERVL -2689 2841 2624 2382 106 66 23 chrX 45881031 45881380 -116718550 - THE1B LTR MaLR 0 364 1 524 345 67 66 chrX 45881380 45881454 -116718476 - HERVL40 LTR ERVL -2906 2624 2552 2280 169 119 28 chrX 45881841 45882304 -116717626 - MLT1D LTR MaLR 0 505 1 282 324 72 9 chrX 45883755 45883866 -116716064 - HERVL40 LTR ERVL -1848 3682 3565 420 213 62 0 chrX 45884033 45884113 -116715817 - HERVL40 LTR ERVL -3337 2193 2109 3007 213 43 0 chrX 45884860 45885396 -116714534 - REP3 LTR ERV 0 562 4 24 0 0 0 chrX 45886035 45886059 -116713871 + AT_rich Low_complexity Low_complexity 1 24 0 32 26 0 0 chrX 45886089 45886128 -116713802 + AT_rich Low_complexity Low_complexity 1 39 0 7744 45 5 0 chrX 45886708 45887742 -116712188 + L1PA6 LINE L1 5106 6143 -11 3076 150 26 19 chrX 45887886 45888427 -116711503 - LTR24B LTR ERV1 -9 567 23 358 279 0 19 chrX 45888539 45888643 -116711287 - LTR24B-int LTR ERV1 -15 5108 5007 1172 314 69 58 chrX 45889010 45890069 -116709861 - HERVR LTR ERV1 -419 6703 5633 260 264 0 14 chrX 45890366 45890438 -116709492 - HERVR LTR ERV1 -1949 4727 4657 21562 127 8 28 chrX 45890463 45892066 -116707864 + L1PA8A LINE L1 2 1636 -4810 2227 76 7 30 chrX 45892066 45892367 -116707563 + AluY SINE Alu 1 294 -17 21562 127 8 28 chrX 45892367 45897278 -116702652 + L1PA8A LINE L1 1636 6443 -3 17752 155 45 19 chrX 45897287 45904786 -116695144 + L1MA1 LINE L1 16 7714 -7 535 334 24 29 chrX 45904977 45905390 -116694540 - HERVR LTR ERV1 -2090 2557 2147 292 267 67 47 chrX 45906031 45906181 -116693749 - HERVR LTR ERV1 -3175 4217 4065 4653 209 38 28 chrX 45907932 45909320 -116690610 + L1MB2 LINE L1 2985 4386 -1760 21 57 0 0 chrX 45909325 45909360 -116690570 + AT_rich Low_complexity Low_complexity 1 35 0 1664 175 49 80 chrX 45909379 45909618 -116690312 + L1MB2 LINE L1 4899 5144 -1027 1809 61 0 0 chrX 45909618 45909831 -116690099 + AluY SINE Alu 1 213 -98 1664 175 49 80 chrX 45909831 45910391 -116689539 + L1MB2 LINE L1 5144 5668 -503 1385 158 36 39 chrX 45910438 45910768 -116689162 + L1MA9 LINE L1 5950 6278 -34 2752 145 32 4 chrX 45910772 45911276 -116688654 + L1MB2 LINE L1 5652 6169 -2 7009 201 9 14 chrX 45911379 45913084 -116686846 + L1 LINE L1 3620 5316 -830 4518 108 46 8 chrX 45913083 45913821 -116686109 + L1PA16 LINE L1 5392 6157 -9 * 4132 174 12 27 chrX 45913875 45914635 -116685295 - L1MA4 LINE L1 -11 6289 5519 1913 157 21 26 chrX 45914635 45915012 -116684918 - THE1C LTR MaLR 0 375 1 9947 118 40 9 chrX 45915020 45916550 -116683380 - THE1C-int LTR MaLR -2 1578 1 1955 119 32 37 chrX 45916550 45916927 -116683003 - THE1C LTR MaLR 0 375 1 4132 174 12 27 chrX 45916927 45916999 -116682931 - L1MA4 LINE L1 -786 5514 5460 5597 119 20 1 chrX 45916999 45918591 -116681339 + L1PA13 LINE L1 4554 6162 -1 261 105 0 0 chrX 45918591 45918629 -116681301 - L1MA4 LINE L1 -825 5475 5438 * 10204 153 47 10 chrX 45918627 45921852 -116678078 + L1MA3 LINE L1 2957 6305 0 226 315 96 0 chrX 45922869 45922942 -116676988 + L2 LINE L2 3107 3186 -86 190 264 42 28 chrX 45923076 45923148 -116676782 + MIR SINE MIR 32 104 -158 550 311 33 16 chrX 45923195 45923443 -116676487 + MIR SINE MIR 8 262 0 180 254 30 30 chrX 45923449 45923516 -116676414 + MIR SINE MIR 136 202 -60 2025 119 10 14 chrX 45923660 45923955 -116675975 + AluSq SINE Alu 1 294 -19 184 304 0 114 chrX 45924029 45924108 -116675822 + MIR SINE MIR 7 76 -186 536 253 7 14 chrX 45924295 45924441 -116675489 + MIR SINE MIR 24 168 -94 214 290 110 30 chrX 45924803 45924903 -116675027 + L2 LINE L2 3122 3229 -43 197 65 32 0 chrX 45924974 45925005 -116674925 + (TA)n Simple_repeat Simple_repeat 2 33 0 195 266 55 73 chrX 45925067 45925176 -116674754 - MIR SINE MIR -111 151 45 281 200 0 0 chrX 45926208 45926268 -116673662 - L1MCb LINE L1 -5768 277 218 434 229 72 54 chrX 45926273 45926439 -116673491 - L1MCb LINE L1 -6239 325 157 277 278 15 78 chrX 45926471 45926676 -116673254 + HAL1 LINE L1 2315 2506 -1 345 268 62 0 chrX 45926954 45927051 -116672879 - MIR SINE MIR -99 163 61 30 27 0 0 chrX 45927377 45927414 -116672516 + AT_rich Low_complexity Low_complexity 1 37 0 327 266 114 6 chrX 45927514 45927672 -116672258 + L1M4 LINE L1 3762 3936 -2210 631 273 214 0 chrX 45927736 45928011 -116671919 - MER46C DNA MER2_type -4 334 1 1677 243 35 23 chrX 45928063 45928585 -116671345 - L1ME3A LINE L1 -3 6167 5640 1486 222 127 23 chrX 45928586 45929178 -116670752 + MLT1E3 LTR MaLR 1 615 -9 658 201 20 20 chrX 45929186 45929335 -116670595 + MLT1E3-int LTR MaLR 1 149 -1222 787 231 33 96 chrX 45929340 45929703 -116670227 + MLT1E3-int LTR MaLR 1032 1371 0 795 229 171 24 chrX 45929703 45930250 -116669680 + MLT1E3 LTR MaLR 1 654 0 759 262 95 5 chrX 45930252 45930565 -116669365 - L1ME3A LINE L1 -536 5634 5296 1069 247 84 58 chrX 45930626 45931504 -116668426 - L1ME3A LINE L1 -1011 5135 4235 305 303 55 12 chrX 45931511 45931676 -116668254 - MLT1L LTR MaLR -302 313 142 1868 140 20 17 chrX 45931868 45932160 -116667770 + AluSx SINE Alu 1 293 -19 1933 119 32 0 chrX 45932160 45932438 -116667492 + AluSx SINE Alu 17 303 -9 856 240 53 0 chrX 45932680 45932888 -116667042 - MER20 DNA MER1_type 0 219 1 395 299 78 30 chrX 45933076 45933307 -116666623 - L1ME LINE L1 -367 5754 5513 239 268 116 51 chrX 45933841 45933979 -116665951 + L2 LINE L2 2338 2484 -830 608 234 14 7 chrX 45933983 45934128 -116665802 + MLT1G LTR MaLR 410 555 -35 273 216 10 98 chrX 45934309 45934503 -116665427 + (CATTT)n Simple_repeat Simple_repeat 4 180 0 * 345 172 15 121 chrX 45934485 45934683 -116665247 + (CATTC)n Simple_repeat Simple_repeat 3 179 0 2231 93 0 7 chrX 45934814 45935115 -116664815 + AluSx SINE Alu 1 299 -13 453 304 78 23 chrX 45935126 45935383 -116664547 + L1ME4a LINE L1 5589 5859 -262 22 0 0 0 chrX 45935439 45935461 -116664469 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chrX 45936157 45936189 -116663741 + (CA)n Simple_repeat Simple_repeat 2 33 0 378 265 60 150 chrX 45936865 45937570 -116662360 + L1M2 LINE L1 770 1410 -5439 233 304 147 45 chrX 45939291 45939515 -116660415 + MER115 DNA AcHobo 13 259 -434 382 264 16 47 chrX 45939626 45939755 -116660175 - MIR SINE MIR -82 180 56 * 721 300 30 8 chrX 45939729 45939966 -116659964 + MIR SINE MIR 21 262 0 550 277 25 6 chrX 45940406 45940565 -116659365 - MIR SINE MIR -1 261 100 675 204 127 0 chrX 45941185 45941342 -116658588 + MER45A DNA AcHobo 1 177 -1 497 273 28 14 chrX 45941465 45941608 -116658322 + MIR SINE MIR 24 168 -94 213 259 0 35 chrX 45942160 45942218 -116657712 + L2 LINE L2 3255 3310 -3 403 302 29 7 chrX 45942530 45942669 -116657261 + L2 LINE L2 3172 3313 0 242 197 26 0 chrX 45942960 45943083 -116656847 + CT-rich Low_complexity Low_complexity 1 126 0 2158 200 84 48 chrX 45943110 45943443 -116656487 - L1ME LINE L1 -370 5796 5477 3305 37 2 7 chrX 45943443 45943846 -116656084 + L1PA6 LINE L1 5749 6149 -5 2158 200 84 48 chrX 45943846 45943909 -116656021 - L1ME LINE L1 -689 5477 5418 309 26 0 0 chrX 45943909 45943947 -116655983 + (TG)n Simple_repeat Simple_repeat 2 39 0 1992 111 21 4 chrX 45943947 45944226 -116655704 - AluSx SINE Alu -28 284 1 2158 200 84 48 chrX 45944226 45944977 -116654953 - L1ME LINE L1 -747 5419 4601 * 2358 239 31 38 chrX 45944974 45945800 -116654130 - L1ME1 LINE L1 -5 6161 5341 2938 122 39 4 chrX 45945800 45946258 -116653672 + MER101 LTR ERV1 1 474 0 640 237 14 28 chrX 45946690 45946905 -116653025 - LTR4 LTR ERV1 0 596 385 1802 208 44 40 chrX 45947963 45948667 -116651263 + LTR43-int LTR ERV1 1199 3120 -3211 1021 187 37 79 chrX 45948881 45949469 -116650461 + LTR43-int LTR ERV1 1563 3646 -2685 822 150 20 45 chrX 45949604 45949804 -116650126 + LTR43-int LTR ERV1 3536 3730 -2868 506 155 0 21 chrX 45949936 45950033 -116649897 - LTR1 LTR ERV1 -690 95 1 1334 245 66 12 chrX 45950346 45950798 -116649132 + LTR43-int LTR ERV1 346 862 -3936 3612 190 23 26 chrX 45950799 45951537 -116648393 + LTR43-int LTR ERV1 4063 4798 0 4442 88 3 5 chrX 45951537 45952140 -116647790 + LTR43 LTR ERV1 1 602 0 857 163 163 51 chrX 45952882 45953078 -116646852 + MER20 DNA MER1_type 2 219 0 2725 213 81 23 chrX 45953319 45954111 -116645819 + L1ME1 LINE L1 5325 6162 -4 5672 141 14 2 chrX 45954191 45955182 -116644748 - L1MA4 LINE L1 -1 6299 5297 985 201 5 0 chrX 45955179 45955383 -116644547 - L1MA4 LINE L1 -2475 3671 3467 * 506 253 124 11 chrX 45956578 45956741 -116643189 + MER5A DNA MER1_type 4 187 -2 42476 35 2 1 chrX 45956945 45963096 -116636834 - L1PA3 LINE L1 0 6155 2 296 332 181 19 chrX 45963320 45963525 -116636405 - MIR SINE MIR -17 245 8 1366 172 95 37 chrX 45963711 45963902 -116636028 - L1MD2 LINE L1 -10 6349 6170 225 0 0 0 chrX 45963902 45963927 -116636003 + (TG)n Simple_repeat Simple_repeat 2 26 0 1366 172 95 37 chrX 45963927 45964023 -116635907 - L1MD2 LINE L1 -189 6170 6081 2167 66 0 76 chrX 45964023 45964354 -116635576 - AluSc SINE Alu 0 308 1 1366 172 95 37 chrX 45964354 45964412 -116635518 - L1MD2 LINE L1 -278 6081 5982 781 152 0 7 chrX 45964440 45964578 -116635352 - L1MD2 LINE L1 -652 5707 5571 554 276 52 17 chrX 45965265 45965439 -116634491 - MIR SINE MIR -14 248 69 433 322 101 5 chrX 45965429 45965637 -116634293 + MIR SINE MIR 23 250 -12 * 1322 155 54 0 chrX 45966374 45966632 -116633298 - Charlie1 DNA MER1_type -401 2360 2089 216 211 123 0 chrX 45966634 45966691 -116633239 + MIR SINE MIR 90 153 -109 387 0 0 0 chrX 45967197 45967240 -116632690 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 229 326 23 12 chrX 45967426 45967512 -116632418 - MIR SINE MIR -4 258 172 324 322 60 38 chrX 45967770 45967953 -116631977 + MIR SINE MIR 25 211 -51 315 71 0 0 chrX 45967980 45968022 -116631908 + (TA)n Simple_repeat Simple_repeat 1 42 0 362 308 137 24 chrX 45968151 45968362 -116631568 + L1M4 LINE L1 14 248 -6294 567 193 86 0 chrX 45968520 45968660 -116631270 + L1 LINE L1 3568 3719 -2427 2723 133 5 0 chrX 45968661 45969081 -116630849 - MSTB1 LTR MaLR 0 432 11 2289 221 33 46 chrX 45969082 45969806 -116630124 + L1 LINE L1 3731 4445 -1701 2517 150 9 30 chrX 45969814 45970275 -116629655 + L1M1 LINE L1 22 472 -7093 1478 170 0 15 chrX 45970275 45970540 -116629390 + MLT1A1 LTR MaLR 105 365 0 2534 184 4 2 chrX 45970541 45971019 -116628911 + MLT1A1-int LTR MaLR 2 480 -1255 3611 217 62 72 chrX 45971028 45972167 -116627763 + MLT1A1-int LTR MaLR 609 1735 0 1565 177 116 3 chrX 45972167 45972495 -116627435 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 45972964 45972986 -116626944 + AT_rich Low_complexity Low_complexity 1 22 0 2015 243 31 9 chrX 45973764 45974430 -116625500 + L1M4 LINE L1 3481 4161 -1985 202 224 0 0 chrX 45974431 45974480 -116625450 + A-rich Low_complexity Low_complexity 1 49 0 288 167 0 0 chrX 45974543 45974597 -116625333 - L1PB4 LINE L1 -3 6153 6100 2483 132 41 19 chrX 45974598 45975015 -116624915 - MSTB LTR MaLR 0 426 1 2358 151 46 0 chrX 45975015 45975452 -116624478 - L1PB4 LINE L1 -104 6052 5596 9546 167 15 12 chrX 45975501 45977223 -116622707 - L1M1 LINE L1 -5837 1728 1 3355 242 52 7 chrX 45977210 45978078 -116621852 - L1M1 LINE L1 -6640 925 19 * 10597 157 29 6 chrX 45978120 45979932 -116619998 + ERVL LTR ERVL 717 2569 -3195 691 221 25 12 chrX 45979932 45980095 -116619835 + MLT2B3 LTR ERVL 390 554 0 429 172 11 11 chrX 45980100 45980193 -116619737 - L1M4 LINE L1 -1196 5761 5669 3475 254 63 23 chrX 45980197 45981907 -116618023 - L1M4c LINE L1 -2530 4427 2646 2391 88 7 0 chrX 45982233 45982529 -116617401 - AluSc SINE Alu -11 298 1 277 275 7 5 chrX 45982562 45982699 -116617231 - L1M4c LINE L1 -4539 2420 2293 1244 201 49 4 chrX 45982725 45982988 -116616942 - MLT1D LTR MaLR 0 505 231 372 133 17 0 chrX 45982991 45983051 -116616879 - MLT1D LTR MaLR -444 61 1 665 219 54 45 chrX 45983053 45983295 -116616635 - L1M4c LINE L1 -4681 2278 2035 589 158 73 12 chrX 45983297 45983461 -116616469 - L1M4c LINE L1 -5040 1815 1642 4897 71 18 10 chrX 45983471 45984143 -116615787 + L1PA13 LINE L1 5484 6160 -3 4459 136 42 39 chrX 45984383 45985230 -116614700 - MER4D LTR ERV1 -2 901 52 231 157 86 57 chrX 45985273 45985343 -116614587 - L1M4c LINE L1 -5129 1726 1655 2346 104 0 0 chrX 45985351 45985648 -116614282 + AluSx SINE Alu 1 297 -15 2996 181 52 11 chrX 45985652 45986264 -116613666 + LTR9B LTR ERV1 8 644 0 387 104 0 75 chrX 45986287 45986354 -116613576 + HUERS-P3 LTR ERV1 34 95 -7323 741 120 17 0 chrX 45986360 45986477 -116613453 + HUERS-P3 LTR ERV1 411 529 -6889 7821 153 16 17 chrX 45986481 45988700 -116611230 + HUERS-P3 LTR ERV1 764 3284 -5314 545 232 152 0 chrX 45988693 45988818 -116611112 + HUERS-P3 LTR ERV1 4539 4682 -4237 * 4184 121 30 8 chrX 45988819 45989481 -116610449 + HUERS-P3 LTR ERV1 4901 5577 -3342 * 4406 169 7 8 chrX 45989448 45990219 -116609711 + HUERS-P3 LTR ERV1 6143 6912 -2007 435 204 0 11 chrX 45990238 45990331 -116609599 + HUERS-P3 LTR ERV1 6854 6945 -473 748 165 16 36 chrX 45990334 45990528 -116609402 + HUERS-P3 LTR ERV1 2383 2572 -2443 1220 182 24 14 chrX 45990803 45991064 -116608866 + HUERS-P3 LTR ERV1 6828 8918 -1 3075 152 68 20 chrX 45991070 45991676 -116608254 + LTR9B LTR ERV1 10 644 0 1308 215 75 32 chrX 45991676 45991975 -116607955 - L1M4c LINE L1 -5194 1665 1340 5675 24 9 1 chrX 45991975 45992638 -116607292 + L1PA4 LINE L1 5483 6150 -5 1308 215 75 32 chrX 45992638 45992776 -116607154 - L1M4c LINE L1 -5519 1340 1209 410 244 136 66 chrX 45992995 45993157 -116606773 - L1M4c LINE L1 -5642 1217 1035 2304 168 54 2 chrX 45993157 45993562 -116606368 - MSTB LTR MaLR 0 426 1 410 244 136 66 chrX 45993562 45993612 -116606318 - L1M4c LINE L1 -5824 1035 990 565 241 6 31 chrX 45993768 45993930 -116606000 + MER67C LTR ERV1 1 158 -552 1289 172 151 32 chrX 45993938 45994375 -116605555 + LTR54B LTR ERV1 8 496 -2 * 2741 152 60 11 chrX 45994375 45994898 -116605032 + MER67C LTR ERV1 162 710 0 599 239 148 6 chrX 45995081 45995259 -116604671 - L1M4c LINE L1 -6646 213 11 291 169 17 0 chrX 45995264 45995323 -116604607 + L1MD3 LINE L1 7928 7987 -8 344 333 41 0 chrX 45995326 45995449 -116604481 - L2 LINE L2 -12 3260 3133 2328 48 0 0 chrX 45995829 45996098 -116603832 - AluSc SINE Alu -8 301 33 284 308 47 37 chrX 45996370 45996477 -116603453 - L2 LINE L2 -40 3232 3125 471 258 19 45 chrX 45996598 45996753 -116603177 - MIR SINE MIR -77 185 35 1819 160 7 3 chrX 45997259 45997547 -116602383 - AluJo SINE Alu -23 289 1 5283 36 3 0 chrX 45997554 45998138 -116601792 + L1PA5 LINE L1 5566 6151 -3 255 61 0 0 chrX 45998338 45998371 -116601559 + (TG)n Simple_repeat Simple_repeat 2 34 0 341 274 94 9 chrX 45998416 45998522 -116601408 + MIR SINE MIR 92 206 -56 295 333 106 16 chrX 45998739 45998862 -116601068 - L2 LINE L2 -40 3232 3099 217 316 0 0 chrX 45999352 45999409 -116600521 + MIR SINE MIR 48 104 -158 680 300 70 12 chrX 45999471 45999714 -116600216 + MIR SINE MIR 1 257 -5 546 371 51 30 chrX 46000477 46001103 -116598827 + L2 LINE L2 1253 1891 -1423 26 0 0 0 chrX 46001310 46001336 -116598594 + AT_rich Low_complexity Low_complexity 1 26 0 4293 193 23 16 chrX 46001336 46002232 -116597698 - L1MB8 LINE L1 -21 6968 6066 1520 204 90 6 chrX 46002238 46002749 -116597181 - L1MB8 LINE L1 -2922 4035 3424 2016 289 68 58 chrX 46002750 46003577 -116596353 - L1MB8 LINE L1 -5997 862 28 4130 140 22 2 chrX 46003582 46004181 -116595749 - LTR36 LTR ERV1 0 611 1 603 354 32 59 chrX 46004221 46004662 -116595268 - LTR36-int LTR ERV1 -73 7049 6621 368 177 32 0 chrX 46004681 46004753 -116595177 - MER49 LTR ERV1 -165 752 488 991 149 85 64 chrX 46004765 46005000 -116594930 - LTR36-int LTR ERV1 -178 6153 5914 10689 139 28 51 chrX 46005053 46008548 -116591382 - LTR36-int LTR ERV1 -529 5417 1634 478 129 35 65 chrX 46008537 46008692 -116591238 - LTR36-int LTR ERV1 -2530 4068 1731 * 6610 55 6 72 chrX 46008692 46009577 -116590353 + LTR12 LTR ERV1 1 826 0 22988 89 6 13 chrX 46009577 46012829 -116587101 + HERV9 LTR ERV1 40 714 0 2363 142 70 2 chrX 46012850 46013293 -116586637 - LTR36-int LTR ERV1 -6461 1659 1187 917 161 35 43 chrX 46013286 46013600 -116586330 - LTR36-int LTR ERV1 -476 1926 1076 * 521 250 8 31 chrX 46013681 46013809 -116586121 - LTR36-int LTR ERV1 -2738 1547 1423 653 290 29 25 chrX 46014123 46014368 -116585562 - LTR36-int LTR ERV1 -1422 364 119 4200 120 26 25 chrX 46014444 46015054 -116584876 - LTR36 LTR ERV1 0 611 1 413 342 44 0 chrX 46015095 46015323 -116584607 + L2 LINE L2 2146 2383 -931 538 100 0 0 chrX 46015327 46015397 -116584533 - LTR36 LTR ERV1 -103 508 439 239 236 18 45 chrX 46015417 46015527 -116584403 + L2 LINE L2 2401 2507 -807 1018 185 0 0 chrX 46015559 46015716 -116584214 - FRAM SINE Alu -20 156 1 303 312 43 0 chrX 46015719 46015812 -116584118 + L2 LINE L2 2533 2629 -685 485 356 31 62 chrX 46015965 46016353 -116583577 + L2 LINE L2 2856 3231 -41 504 216 43 36 chrX 46016644 46016783 -116583147 - L1MA9 LINE L1 -30 6282 6143 2318 56 38 0 chrX 46016786 46017074 -116582856 - AluY SINE Alu -12 299 1 322 296 43 9 chrX 46017118 46017233 -116582697 + MIR SINE MIR 45 163 -99 227 377 70 0 chrX 46018526 46018640 -116581290 - MER91A DNA MER1_type -74 122 1 304 226 73 79 chrX 46018763 46018872 -116581058 + L1ME4a LINE L1 5944 6053 -68 1560 109 50 0 chrX 46018872 46019110 -116580820 - L1MA3 LINE L1 0 6305 6056 304 226 73 79 chrX 46019110 46019177 -116580753 + L1ME4a LINE L1 6053 6119 -2 1110 174 40 25 chrX 46019517 46019792 -116580138 - L1MC5 LINE L1 -35 7926 7648 21 36 0 0 chrX 46020471 46020499 -116579431 + AT_rich Low_complexity Low_complexity 1 28 0 298 192 110 0 chrX 46020499 46020572 -116579358 - MER113 DNA MER1_type? -274 247 167 243 377 39 8 chrX 46020868 46020998 -116578932 - L2 LINE L2 0 3272 3139 193 300 83 0 chrX 46021640 46021700 -116578230 - L2 LINE L2 -220 3093 3029 1854 118 33 59 chrX 46021865 46022170 -116577760 - AluSx SINE Alu -15 297 1 564 138 53 0 chrX 46023617 46023711 -116576219 + L1PA13 LINE L1 6060 6158 -5 183 80 0 0 chrX 46025993 46026018 -116573912 + (CCG)n Simple_repeat Simple_repeat 1 25 0 215 91 91 0 chrX 46027096 46027140 -116572790 + T-rich Low_complexity Low_complexity 2 49 0 1373 7 0 0 chrX 46027155 46027300 -116572630 - L1PA3 LINE L1 -1 6154 6010 6497 19 0 0 chrX 46027300 46028288 -116571642 + L1PA3 LINE L1 4999 5986 -169 2389 78 3 0 chrX 46028948 46029255 -116570675 + AluSp SINE Alu 1 308 -5 243 287 23 47 chrX 46029316 46029445 -116570485 + L1M4 LINE L1 4038 4163 -1983 28 29 0 0 chrX 46029545 46029580 -116570350 + AT_rich Low_complexity Low_complexity 1 35 0 2595 149 73 0 chrX 46030136 46030533 -116569397 + MSTA LTR MaLR 1 426 -2 562 247 53 149 chrX 46030759 46031229 -116568701 + MLT1H LTR MaLR 118 542 -7 226 261 97 45 chrX 46031374 46031508 -116568422 - MIR SINE MIR -4 258 118 312 250 110 10 chrX 46032675 46032775 -116567155 + MIR SINE MIR 53 162 -100 749 257 57 79 chrX 46033605 46034207 -116565723 + L2 LINE L2 2737 3313 0 195 351 69 23 chrX 46034209 46034340 -116565590 + L2 LINE L2 3136 3272 0 180 358 49 0 chrX 46034459 46034540 -116565390 + L2 LINE L2 3155 3239 -33 346 311 60 27 chrX 46034764 46034947 -116564983 - MIR SINE MIR -28 234 46 476 256 66 29 chrX 46035984 46036196 -116563734 - MIR SINE MIR -32 230 12 2123 97 10 24 chrX 46036734 46037032 -116562898 + AluSq SINE Alu 1 294 -19 260 213 0 0 chrX 46037698 46037759 -116562171 - MER4-int LTR ERV1 -5423 1175 1115 836 180 53 0 chrX 46038292 46038442 -116561488 - MLT1E1 LTR MaLR 0 654 497 472 161 11 0 chrX 46038444 46038531 -116561399 - MLT2B2 LTR ERVL -427 88 1 507 277 98 36 chrX 46038776 46039000 -116560930 - MIR SINE MIR -10 252 15 693 269 32 50 chrX 46039220 46039502 -116560428 + L2 LINE L2 1628 1904 -1410 6706 56 5 1 chrX 46039503 46040344 -116559586 + L1P LINE L1 1938 2781 -3365 2165 296 108 24 chrX 46040347 46040419 -116559511 + L2 LINE L2 1909 1974 -1339 2335 101 0 0 chrX 46040419 46040716 -116559214 + AluSq SINE Alu 1 297 -16 2165 296 108 24 chrX 46040716 46041728 -116558202 + L2 LINE L2 1974 3067 -246 198 128 0 0 chrX 46041747 46041786 -116558144 + (T)n Simple_repeat Simple_repeat 1 39 0 30094 43 14 1 chrX 46041809 46047837 -116552093 - L1PA3 LINE L1 0 6155 1 434 322 10 34 chrX 46047856 46048064 -116551866 + L2 LINE L2 3097 3299 -14 429 54 0 0 chrX 46048498 46048554 -116551376 + (TG)n Simple_repeat Simple_repeat 1 56 0 338 318 23 69 chrX 46048968 46049141 -116550789 - L1ME3A LINE L1 -37 6133 5969 221 383 42 8 chrX 46049369 46049489 -116550441 - L2 LINE L2 -11 3261 3138 268 306 45 27 chrX 46049576 46049687 -116550243 + MIR SINE MIR 67 179 -83 314 365 46 30 chrX 46050104 46050301 -116549629 - MIR SINE MIR 0 262 63 1959 200 30 116 chrX 46050357 46051227 -116548703 - L1MC4 LINE L1 -1 8041 7247 2817 163 39 19 chrX 46051323 46051771 -116548159 - L1MA8 LINE L1 -3 6288 5824 1676 205 3 0 chrX 46051771 46052068 -116547862 - AluJb SINE Alu -12 300 3 2817 163 39 19 chrX 46052068 46052207 -116547723 - L1MA8 LINE L1 -467 5824 5689 236 143 0 20 chrX 46052216 46052265 -116547665 - L1MC4 LINE L1 -896 7146 7099 1869 176 35 29 chrX 46052267 46052818 -116547112 - MLT2A2 LTR ERVL 0 554 1 1052 232 29 3 chrX 46052840 46053146 -116546784 - L1MC4 LINE L1 -955 7087 6774 209 287 35 92 chrX 46053159 46053287 -116546643 + MIR SINE MIR 67 184 -78 2282 102 3 9 chrX 46053287 46053602 -116546328 + AluSq SINE Alu 1 313 0 209 287 35 92 chrX 46053602 46053647 -116546283 + MIR SINE MIR 184 230 -32 256 191 43 64 chrX 46053666 46053760 -116546170 + L1MC4 LINE L1 6984 7075 -967 435 271 123 0 chrX 46054088 46054210 -116545720 + L2 LINE L2 3136 3272 0 241 254 0 0 chrX 46054253 46054308 -116545622 - MIR SINE MIR -73 135 81 2249 102 0 13 chrX 46054308 46054612 -116545318 - AluSq SINE Alu -13 300 1 412 290 61 8 chrX 46054819 46054950 -116544980 - L2 LINE L2 -4 3309 3172 210 279 2 0 chrX 46055169 46055226 -116544704 + MIR SINE MIR 97 155 -53 196 312 91 0 chrX 46055307 46055384 -116544546 - MIR SINE MIR 0 262 179 37 93 0 0 chrX 46055605 46055712 -116544218 + AT_rich Low_complexity Low_complexity 1 107 0 1387 154 4 0 chrX 46055783 46056030 -116543900 - L1MA6 LINE L1 0 6300 6053 5079 230 26 12 chrX 46056032 46057552 -116542378 + L1 LINE L1 2581 4122 -2024 356 219 16 0 chrX 46057552 46057616 -116542314 + MER2 DNA MER2_type 1 65 -280 759 273 12 31 chrX 46057771 46058015 -116541915 - L1MEc LINE L1 -3712 2454 2226 2264 119 0 0 chrX 46058015 46058309 -116541621 - AluSx SINE Alu -18 294 1 759 273 12 31 chrX 46058309 46058419 -116541511 - L1MEc LINE L1 -3940 2226 2115 874 153 0 8 chrX 46058430 46058561 -116541369 - AluSq/x SINE Alu -182 130 1 337 274 21 120 chrX 46058802 46059011 -116540919 - MIR SINE MIR -70 192 6 211 229 13 47 chrX 46059100 46059199 -116540731 + L2 LINE L2 2896 2992 -321 2642 121 0 0 chrX 46059857 46060221 -116539709 - THE1B LTR MaLR 0 364 1 233 298 0 0 chrX 46060269 46060326 -116539604 + L2 LINE L2 3257 3313 0 218 378 5 41 chrX 46060369 46060565 -116539365 + L2 LINE L2 1227 1415 -1899 3310 222 64 28 chrX 46060751 46061244 -116538686 - L1ME1 LINE L1 -5 6972 6498 2501 142 42 31 chrX 46061244 46061696 -116538234 - MSTB2 LTR MaLR 0 457 1 3310 222 64 28 chrX 46061696 46062884 -116537046 - L1ME1 LINE L1 -479 6498 5227 2039 141 131 13 chrX 46062884 46063267 -116536663 + MSTA LTR MaLR 1 428 0 3310 222 64 28 chrX 46063267 46063621 -116536309 - L1ME1 LINE L1 -1750 5227 4887 252 0 0 0 chrX 46063624 46063652 -116536278 + (TG)n Simple_repeat Simple_repeat 2 29 0 643 148 31 10 chrX 46063663 46063859 -116536071 + CT-rich Low_complexity Low_complexity 1 200 0 1407 166 102 4 chrX 46063859 46064124 -116535806 - AluJo SINE Alu -13 299 9 572 261 22 14 chrX 46064132 46064354 -116535576 - L1ME1 LINE L1 -2094 4863 4640 807 168 0 29 chrX 46064355 46064492 -116535438 + FLAM_C SINE Alu 1 133 -10 548 262 112 0 chrX 46064550 46064764 -116535166 - L1ME1 LINE L1 -5291 1568 1331 185 62 0 31 chrX 46064805 46064837 -116535093 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 41012 47 6 0 chrX 46064837 46070930 -116529000 - L1PA4 LINE L1 -24 6131 1 320 301 23 102 chrX 46071045 46071261 -116528669 - L1ME1 LINE L1 -5622 1233 1035 335 335 78 23 chrX 46071597 46071815 -116528115 - L1ME1 LINE L1 -6617 242 13 1146 261 88 16 chrX 46071885 46072260 -116527670 - MLT1H LTR MaLR -2 547 146 957 192 80 7 chrX 46072270 46072616 -116527314 - MER61C LTR ERV1 -30 404 1 15772 103 4 4 chrX 46072616 46075203 -116524727 - MER61C-int LTR ERV1 0 5217 2554 2077 143 0 0 chrX 46075204 46075491 -116524439 + AluSx SINE Alu 1 287 -25 2337 211 37 0 chrX 46076005 46076493 -116523437 + LTR53 LTR ERVL 1 506 -13 429 331 19 31 chrX 46076518 46076678 -116523252 - MIR SINE MIR -90 172 15 2168 109 7 0 chrX 46076765 46077050 -116522880 - AluSx SINE Alu -25 287 1 1968 86 0 0 chrX 46077073 46077316 -116522614 - AluSq SINE Alu -15 298 56 23816 123 9 8 chrX 46077317 46082121 -116517809 + L1PA8A LINE L1 1319 6119 -12 21 57 0 0 chrX 46082121 46082156 -116517774 + AT_rich Low_complexity Low_complexity 1 35 0 695 209 85 25 chrX 46082492 46082659 -116517271 - L1M4 LINE L1 -2780 3366 3174 845 181 81 0 chrX 46082659 46082819 -116517111 + FAM SINE Alu 1 173 -2 695 209 85 25 chrX 46082819 46082934 -116516996 - L1M4 LINE L1 -2972 3174 3067 * 6107 234 49 15 chrX 46082913 46085540 -116514390 - L1MB8 LINE L1 0 6178 3445 2277 111 7 0 chrX 46085540 46085847 -116514083 - AluSg SINE Alu -1 309 1 6107 234 49 15 chrX 46085847 46085972 -116513958 - L1MB8 LINE L1 -2733 3445 3326 1301 52 0 13 chrX 46086072 46086227 -116513703 - AluY SINE Alu -158 153 1 495 302 11 11 chrX 46086227 46086505 -116513425 - L1MB8 LINE L1 -2906 3240 2963 1074 190 60 87 chrX 46086510 46086647 -116513283 - L1MD2 LINE L1 -103 6650 6511 1969 90 45 64 chrX 46086647 46086958 -116512972 - AluSx SINE Alu -7 305 1 1074 190 60 87 chrX 46086958 46087189 -116512741 - L1MD2 LINE L1 -242 6511 6292 7486 47 2 0 chrX 46087189 46088889 -116511041 - L1PA5 LINE L1 -5 6149 4447 5824 233 38 17 chrX 46088899 46091185 -116508745 + L1MC/D LINE L1 3401 5736 -608 1518 138 20 0 chrX 46091190 46091443 -116508487 - MSTC LTR MaLR 0 428 171 10013 40 0 1 chrX 46091443 46092751 -116507179 - L1P LINE L1 -2220 3926 2620 1061 238 97 6 chrX 46092749 46093259 -116506671 - L1MD2 LINE L1 -449 6304 5613 * 945 258 113 34 chrX 46093269 46094144 -116505786 - L1MD2 LINE L1 -3748 2793 1860 5768 103 13 32 chrX 46094165 46095343 -116504587 - L1PA10 LINE L1 0 6168 5011 2411 70 0 23 chrX 46295518 46295818 -116304112 - AluSg1 SINE Alu -16 293 1 2230 115 3 0 chrX 46295853 46296148 -116303782 - AluSq SINE Alu -17 296 1 1662 203 7 0 chrX 46296451 46296742 -116303188 - AluJo SINE Alu -15 297 5 1416 183 133 0 chrX 46296748 46297011 -116302919 - AluJb SINE Alu -14 298 1 974 138 0 88 chrX 46297057 46297238 -116302692 - FRAM SINE Alu -19 157 1 524 209 37 96 chrX 46297254 46297441 -116302489 - L2 LINE L2 -35 3278 3103 527 256 106 6 chrX 46297559 46297719 -116302211 - MIR SINE MIR -76 186 11 338 264 120 16 chrX 46297727 46297852 -116302078 - MIR SINE MIR -77 185 48 416 333 58 10 chrX 46298007 46298250 -116301680 - MER115 DNA AcHobo -317 376 87 298 263 90 21 chrX 46298572 46298823 -116301107 - L1ME4a LINE L1 -22 6099 5795 547 266 44 92 chrX 46299044 46299360 -116300570 - L2 LINE L2 0 3272 2972 245 349 47 0 chrX 46299360 46299466 -116300464 + HAL1 LINE L1 3 113 -2394 3750 254 62 78 chrX 46299481 46299606 -116300324 + HAL1 LINE L1 239 365 -2142 1546 174 60 25 chrX 46299606 46299723 -116300207 + AluJo SINE Alu 3 114 -198 216 0 0 0 chrX 46299723 46299747 -116300183 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1546 174 60 25 chrX 46299747 46299910 -116300020 + AluJo SINE Alu 114 293 -19 3750 254 62 78 chrX 46299910 46300456 -116299474 + HAL1 LINE L1 365 918 -1589 872 142 0 8 chrX 46300456 46300590 -116299340 + FLAM_C SINE Alu 1 133 0 3750 254 62 78 chrX 46300590 46301520 -116298410 + HAL1 LINE L1 918 1862 -645 2328 107 0 0 chrX 46301520 46301820 -116298110 - AluSx SINE Alu -12 300 1 3750 254 62 78 chrX 46301820 46302041 -116297889 + HAL1 LINE L1 1862 2032 -475 2066 145 17 0 chrX 46302041 46302331 -116297599 + AluJb SINE Alu 1 295 -17 3750 254 62 78 chrX 46302331 46302448 -116297482 + HAL1 LINE L1 2032 2149 -358 1439 155 0 5 chrX 46302449 46302662 -116297268 + AluSg/x SINE Alu 82 293 -17 227 193 0 35 chrX 46302673 46302730 -116297200 + HAL1 LINE L1 2154 2208 -299 2276 117 0 3 chrX 46302806 46303106 -116296824 + AluSx SINE Alu 1 299 -13 2468 71 7 0 chrX 46303333 46303628 -116296302 + AluSx SINE Alu 1 297 -15 2622 68 0 0 chrX 46304033 46304343 -116295587 - AluY SINE Alu -1 310 1 2257 106 0 0 chrX 46304543 46304865 -116295065 + AluSx SINE Alu 1 322 0 421 324 45 11 chrX 46305005 46305181 -116294749 - MIR3 SINE MIR -7 201 20 518 263 190 5 chrX 46305634 46305839 -116294091 + MIR SINE MIR 1 243 -19 200 167 95 0 chrX 46305806 46305848 -116294082 + L2 LINE L2 3215 3260 -12 * 264 306 93 72 chrX 46306267 46306460 -116293470 - MIR SINE MIR -7 255 59 183 239 0 0 chrX 46306847 46306893 -116293037 + (CA)n Simple_repeat Simple_repeat 2 47 0 262 306 14 0 chrX 46307105 46307177 -116292753 + MIR3 SINE MIR 108 180 -28 454 227 66 58 chrX 46307224 46307410 -116292520 - MIR3 SINE MIR -62 146 3 577 244 14 34 chrX 46307416 46307625 -116292305 + L2 LINE L2 2772 2976 -338 261 0 0 0 chrX 46308302 46308331 -116291599 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 431 330 76 16 chrX 46308650 46308835 -116291095 - MER91A DNA MER1_type 0 196 1 376 231 5 156 chrX 46309395 46309581 -116290349 - MIR SINE MIR -71 191 34 340 301 64 6 chrX 46309661 46309817 -116290113 - MIR SINE MIR -2 260 96 237 213 49 16 chrX 46310420 46310481 -116289449 + MIR SINE MIR 78 140 -68 224 238 32 32 chrX 46310784 46310847 -116289083 - MIR SINE MIR -81 127 65 352 298 30 15 chrX 46310847 46310978 -116288952 + MIR SINE MIR 70 202 -60 209 282 71 12 chrX 46311366 46311451 -116288479 + MIR3 SINE MIR 109 198 -10 2480 81 0 3 chrX 46312696 46313006 -116286924 - AluSc SINE Alu 0 309 1 324 345 115 7 chrX 46314097 46314236 -116285694 - MIR SINE MIR -21 241 88 679 297 75 43 chrX 46314257 46314631 -116285299 - L2 LINE L2 0 3272 2887 367 318 63 55 chrX 46314898 46315153 -116284777 - L2 LINE L2 -31 3241 2985 371 284 125 0 chrX 46315588 46315764 -116284166 + L2 LINE L2 2779 2976 -338 468 211 26 18 chrX 46315813 46315927 -116284003 + L2 LINE L2 3180 3294 -19 300 308 168 7 chrX 46316216 46316359 -116283571 - MIR SINE MIR -77 185 20 189 162 0 0 chrX 46316366 46316403 -116283527 - MIR SINE MIR -91 117 81 2010 127 3 59 chrX 46316429 46316751 -116283179 - AluSx SINE Alu -8 304 1 330 276 124 0 chrX 46317300 46317405 -116282525 + MIR SINE MIR 29 146 -62 254 352 97 45 chrX 46317691 46317867 -116282063 + MIR SINE MIR 1 185 -77 298 217 17 0 chrX 46319200 46319320 -116280610 + CT-rich Low_complexity Low_complexity 2 123 0 622 233 3 13 chrX 46319693 46320004 -116279926 + CT-rich Low_complexity Low_complexity 1 308 0 274 276 41 10 chrX 46320347 46320445 -116279485 - L2 LINE L2 -231 3041 2941 2409 85 0 16 chrX 46320464 46320770 -116279160 - AluSg SINE Alu -9 301 1 1609 304 82 61 chrX 46320889 46321356 -116278574 + L1MC4a LINE L1 2877 3333 -2788 2704 58 0 0 chrX 46321356 46321667 -116278263 + AluY SINE Alu 1 311 0 1609 304 82 61 chrX 46321667 46321695 -116278235 + L1MC4a LINE L1 3333 3359 -2762 2412 100 0 0 chrX 46321695 46321995 -116277935 + AluSx SINE Alu 1 300 -12 1609 304 82 61 chrX 46321995 46322147 -116277783 + L1MC4a LINE L1 3359 3506 -2615 2301 82 0 30 chrX 46322147 46322452 -116277478 + AluSg SINE Alu 1 296 -14 1609 304 82 61 chrX 46322452 46322890 -116277040 + L1MC4a LINE L1 3506 3934 -2187 233 132 0 0 chrX 46322890 46322928 -116277002 + MLT1F1 LTR MaLR 526 563 -4 1609 304 82 61 chrX 46322928 46323665 -116276265 + L1MC4a LINE L1 3934 4655 -1466 1969 62 138 33 chrX 46323665 46323940 -116275990 + AluY SINE Alu 1 304 -7 1609 304 82 61 chrX 46323940 46324202 -116275728 + L1MC4a LINE L1 4655 4910 -1211 1688 125 46 59 chrX 46324202 46324505 -116275425 + AluSx SINE Alu 1 299 -13 1609 304 82 61 chrX 46324505 46324905 -116275025 + L1MC4a LINE L1 4910 5461 -660 2703 58 0 0 chrX 46324905 46325216 -116274714 + AluY SINE Alu 1 311 0 1609 304 82 61 chrX 46325216 46325378 -116274552 + L1MC4a LINE L1 5461 5618 -503 889 276 75 6 chrX 46325686 46326005 -116273925 + L1MC4a LINE L1 5600 5940 -1868 457 304 76 61 chrX 46326190 46326453 -116273477 - L2 LINE L2 -2 3270 3004 653 242 71 0 chrX 46326547 46326729 -116273201 + MIR SINE MIR 34 228 -34 180 283 0 0 chrX 46326721 46326767 -116273163 + L2 LINE L2 3153 3198 -74 * 593 299 19 24 chrX 46327118 46327329 -116272601 + MIR SINE MIR 53 262 0 340 337 89 20 chrX 46327388 46327634 -116272296 - L2 LINE L2 -90 3182 2920 183 42 0 0 chrX 46328598 46328622 -116271308 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1552 223 109 13 chrX 46328911 46329359 -116270571 - L2 LINE L2 0 3313 2823 1110 314 157 19 chrX 46329372 46330262 -116269668 - L2 LINE L2 -770 2544 1532 270 348 10 60 chrX 46330438 46330639 -116269291 - L2 LINE L2 -225 3047 2857 606 308 58 14 chrX 46330676 46330884 -116269046 - MIR SINE MIR -26 236 20 205 301 97 21 chrX 46331138 46331231 -116268699 - MIR SINE MIR -71 191 92 240 210 0 32 chrX 46331366 46331428 -116268502 + CT-rich Low_complexity Low_complexity 3 62 0 505 268 112 27 chrX 46331755 46331979 -116267951 - MIR SINE MIR 0 262 20 646 230 126 29 chrX 46332118 46332292 -116267638 + MIR SINE MIR 29 219 -43 234 156 0 0 chrX 46332601 46332646 -116267284 + GA-rich Low_complexity Low_complexity 1 45 0 367 248 119 18 chrX 46333523 46333632 -116266298 + MIR3 SINE MIR 87 206 -2 435 302 54 7 chrX 46334075 46334224 -116265706 + MIR SINE MIR 31 186 -76 232 295 16 23 chrX 46334396 46334525 -116265405 + (CTCA)n Simple_repeat Simple_repeat 1 128 0 856 161 0 0 chrX 46334600 46334724 -116265206 + FLAM_C SINE Alu 1 124 -19 210 326 31 23 chrX 46334932 46335061 -116264869 - L2 LINE L2 -218 3054 2925 272 296 35 35 chrX 46336271 46336386 -116263544 + MIR3 SINE MIR 82 196 -12 189 247 65 13 chrX 46336389 46336466 -116263464 - L3b LINE CR1 -158 1425 1345 461 272 8 8 chrX 46336619 46336744 -116263186 + MIR SINE MIR 12 136 -126 195 229 57 43 chrX 46336843 46336913 -116263017 - MIR3 SINE MIR -133 75 5 495 280 132 5 chrX 46337598 46337787 -116262143 + MIR SINE MIR 50 262 0 285 186 0 0 chrX 46337978 46338048 -116261882 + (TG)n Simple_repeat Simple_repeat 2 71 0 306 50 0 0 chrX 46338133 46338173 -116261757 + (TG)n Simple_repeat Simple_repeat 1 40 0 360 266 77 7 chrX 46338248 46338391 -116261539 - MIR SINE MIR -89 173 21 620 214 48 14 chrX 46338771 46338916 -116261014 + MIR SINE MIR 47 196 -66 1120 226 91 69 chrX 46339164 46339782 -116260148 + L2 LINE L2 2692 3309 -4 2256 123 3 0 chrX 46339838 46340146 -116259784 - AluJb SINE Alu -2 310 2 1882 154 7 7 chrX 46340151 46340443 -116259487 - AluSx SINE Alu -20 292 1 2359 95 10 0 chrX 46340453 46340757 -116259173 - AluSx SINE Alu -5 307 1 189 0 0 0 chrX 46340771 46340792 -116259138 + (TGG)n Simple_repeat Simple_repeat 1 21 0 243 0 0 0 chrX 46340794 46340821 -116259109 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1917 115 41 0 chrX 46340823 46341093 -116258837 - AluSx SINE Alu -31 281 1 186 244 0 0 chrX 46341241 46341286 -116258644 - L2 LINE L2 -20 3293 3249 1059 244 8 4 chrX 46341684 46341942 -116257988 + MIR SINE MIR 3 261 -1 186 304 223 18 chrX 46344053 46344165 -116255765 - L2 LINE L2 -4 3268 3134 235 232 0 21 chrX 46344342 46344437 -116255493 + CT-rich Low_complexity Low_complexity 2 94 0 2267 110 3 3 chrX 46345317 46345617 -116254313 - AluSx SINE Alu -12 300 1 339 211 294 0 chrX 46345764 46345873 -116254057 - MIR SINE MIR -5 257 117 186 399 11 16 chrX 46346002 46346185 -116253745 - L2 LINE L2 -172 3100 2919 406 296 78 48 chrX 46346243 46346449 -116253481 + MIR SINE MIR 45 256 -6 248 250 0 17 chrX 46346643 46346703 -116253227 - L2 LINE L2 -1 3312 3254 1252 174 77 84 chrX 46346826 46347137 -116252793 - MLT1F LTR MaLR 0 542 234 46 62 0 0 chrX 46347224 46347305 -116252625 + AT_rich Low_complexity Low_complexity 1 81 0 2194 121 7 0 chrX 46347305 46347602 -116252328 + AluSx SINE Alu 1 299 -13 2184 115 3 0 chrX 46347602 46347888 -116252042 - AluJo SINE Alu -25 287 1 699 222 52 7 chrX 46347894 46348047 -116251883 - MLT1F LTR MaLR -382 160 1 312 324 20 0 chrX 46348382 46348484 -116251446 + CT-rich Low_complexity Low_complexity 4 107 0 209 93 19 74 chrX 46349033 46349087 -116250843 + (CCCCAG)n Simple_repeat Simple_repeat 2 52 0 236 291 87 55 chrX 46349544 46349671 -116250259 + MIR3 SINE MIR 5 135 -73 263 300 42 50 chrX 46349699 46349819 -116250111 + MIR SINE MIR 17 135 -73 445 323 31 0 chrX 46350068 46350198 -116249732 - MIR SINE MIR -73 189 56 199 310 0 28 chrX 46350356 46350427 -116249503 + L3 LINE CR1 1505 1573 -4 330 239 0 0 chrX 46350589 46350660 -116249270 + MIR3 SINE MIR 93 163 -45 235 250 9 112 chrX 46351114 46351230 -116248700 + MIR3 SINE MIR 65 168 -40 408 287 73 15 chrX 46351624 46351760 -116248170 + MIR SINE MIR 107 250 -12 1017 227 11 37 chrX 46351774 46352043 -116247887 - MIR SINE MIR 0 262 1 207 170 0 43 chrX 46352048 46352095 -116247835 + MIR SINE MIR 31 75 -187 645 301 21 5 chrX 46352160 46352346 -116247584 + MIR SINE MIR 31 219 -43 323 284 53 11 chrX 46352881 46352976 -116246954 - L2 LINE L2 -22 3291 3193 195 69 0 0 chrX 46352977 46353006 -116246924 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 341 320 56 74 chrX 46353139 46353476 -116246454 - L2 LINE L2 -23 3249 2919 2297 123 3 0 chrX 46353504 46353813 -116246117 + AluSx SINE Alu 1 310 -2 2093 120 43 0 chrX 46354208 46354507 -116245423 - AluJo SINE Alu 0 312 1 279 54 0 0 chrX 46354692 46354729 -116245201 + (TG)n Simple_repeat Simple_repeat 2 38 0 819 249 193 67 chrX 46354767 46355122 -116244808 - L1ME4a LINE L1 -14 6107 5798 2005 133 0 4 chrX 46355122 46355400 -116244530 - AluJb SINE Alu -12 300 24 819 249 193 67 chrX 46355400 46355420 -116244510 - L1ME4a LINE L1 -323 5798 5782 2249 101 10 10 chrX 46355420 46355728 -116244202 - AluSc SINE Alu -1 308 1 819 249 193 67 chrX 46355728 46355961 -116243969 - L1ME4a LINE L1 -339 5782 5421 291 256 165 41 chrX 46356344 46356539 -116243391 + MIR SINE MIR 34 254 -8 2298 110 0 10 chrX 46356628 46356937 -116242993 + AluSx SINE Alu 1 306 -6 394 277 59 121 chrX 46356940 46357205 -116242725 - L2 LINE L2 -5 3267 3026 2551 84 0 0 chrX 46357205 46357514 -116242416 - AluSx SINE Alu -3 309 1 394 277 59 121 chrX 46357514 46357587 -116242343 - L2 LINE L2 -246 3026 2950 2057 137 6 13 chrX 46358258 46358572 -116241358 + AluJb SINE Alu 1 312 0 2431 83 3 3 chrX 46358590 46358891 -116241039 + AluSx SINE Alu 1 301 -11 447 315 116 17 chrX 46359013 46359245 -116240685 - L3 LINE CR1 -111 1466 1212 1066 146 101 0 chrX 46359247 46359446 -116240484 - MER20 DNA MER1_type 0 219 1 377 219 73 0 chrX 46359470 46359552 -116240378 + MIR SINE MIR 109 196 -66 355 276 61 0 chrX 46359626 46359724 -116240206 - L2 LINE L2 -22 3250 3147 2045 141 13 0 chrX 46360988 46361292 -116238638 + AluJo SINE Alu 1 308 -4 445 183 287 18 chrX 46361592 46361756 -116238174 - L3 LINE CR1 -7 1570 1363 396 315 102 5 chrX 46361784 46361981 -116237949 + MIR SINE MIR 34 249 -13 237 150 0 0 chrX 46362141 46362181 -116237749 - L3 LINE CR1 -343 1234 1195 725 262 33 14 chrX 46362431 46362645 -116237285 + MIR SINE MIR 20 237 -25 301 190 33 16 chrX 46363584 46363705 -116236225 + CT-rich Low_complexity Low_complexity 2 124 0 283 230 40 87 chrX 46364150 46364276 -116235654 + MIR3 SINE MIR 64 183 -25 213 39 0 0 chrX 46364694 46364720 -116235210 + (CCA)n Simple_repeat Simple_repeat 1 26 0 337 246 8 45 chrX 46365218 46365352 -116234578 + C-rich Low_complexity Low_complexity 4 132 0 26 0 0 0 chrX 46366500 46366526 -116233404 + AT_rich Low_complexity Low_complexity 1 26 0 394 302 82 6 chrX 46366978 46367137 -116232793 + MIR SINE MIR 10 180 -82 245 264 191 18 chrX 46367419 46367529 -116232401 - MIR SINE MIR -60 148 20 380 285 184 0 chrX 46368021 46368179 -116231751 + MIR SINE MIR 52 238 -24 180 0 0 0 chrX 46368582 46368602 -116231328 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 815 98 0 33 chrX 46368957 46369079 -116230851 + AluSg/x SINE Alu 189 306 -3 981 207 30 5 chrX 46369122 46369325 -116230605 + MER3 DNA MER1_type 2 209 0 294 298 88 56 chrX 46369415 46369630 -116230300 - L2 LINE L2 -181 3091 2870 1423 165 97 36 chrX 46369777 46369955 -116229975 - L1MC4 LINE L1 -704 7338 7172 1929 147 27 3 chrX 46369955 46370247 -116229683 - AluJo SINE Alu -13 299 1 1423 165 97 36 chrX 46370247 46370538 -116229392 - L1MC4 LINE L1 -870 7172 6762 551 168 174 0 chrX 46370593 46370742 -116229188 - L1MC4 LINE L1 -871 7171 6997 320 257 109 10 chrX 46370775 46370876 -116229054 - L1MC4 LINE L1 -1346 6696 6586 206 342 35 9 chrX 46370878 46370992 -116228938 - L2 LINE L2 -685 2629 2513 657 156 55 16 chrX 46371363 46371491 -116228439 + MIR SINE MIR 37 169 -93 335 250 62 0 chrX 46371520 46371616 -116228314 - MIR SINE MIR -65 197 96 485 282 8 0 chrX 46371634 46371751 -116228179 + L2 LINE L2 3196 3313 0 237 304 0 0 chrX 46371851 46371907 -116228023 - MIR SINE MIR -137 71 16 201 171 0 24 chrX 46372031 46372072 -116227858 + (CCA)n Simple_repeat Simple_repeat 3 42 0 322 278 49 32 chrX 46372245 46372372 -116227558 + MIR SINE MIR 70 197 -28 185 286 48 89 chrX 46372562 46372730 -116227200 + MIR SINE MIR 99 259 -3 285 239 151 24 chrX 46372753 46372769 -116227161 - MIR SINE MIR 0 262 249 193 107 0 0 chrX 46372769 46372797 -116227133 - L2 LINE L2 -22 3250 3223 285 239 151 24 chrX 46372797 46372938 -116226992 - MIR SINE MIR -13 249 16 246 299 231 8 chrX 46373170 46373287 -116226643 - L2 LINE L2 -1 3271 3129 278 280 243 23 chrX 46375310 46375524 -116224406 + MIR SINE MIR 1 261 -1 467 316 50 1 chrX 46377506 46377673 -116222257 + MIR3 SINE MIR 4 180 -28 352 301 142 0 chrX 46378245 46378358 -116221572 - MIR SINE MIR -114 148 20 223 320 97 0 chrX 46378852 46378955 -116220975 + MIR SINE MIR 30 142 -66 610 167 0 0 chrX 46379665 46379761 -116220169 + FLAM_C SINE Alu 33 128 -15 221 376 21 0 chrX 46380495 46380588 -116219342 - MIR SINE MIR -78 130 36 288 233 165 19 chrX 46380614 46380717 -116219213 + MIR SINE MIR 103 220 -42 2033 142 14 0 chrX 46380797 46381092 -116218838 + AluJb SINE Alu 6 304 -8 180 0 0 0 chrX 46382829 46382849 -116217081 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 977 199 0 0 chrX 46382856 46383007 -116216923 - FAM SINE Alu -34 151 1 349 261 34 11 chrX 46383037 46383125 -116216805 - L2 LINE L2 -36 3236 3147 298 252 107 10 chrX 46383153 46383256 -116216674 - MIR SINE MIR -34 228 116 614 274 77 83 chrX 46384107 46384629 -116215301 + L2 LINE L2 2751 3271 -1 2230 111 0 10 chrX 46385408 46385706 -116214224 + AluJb SINE Alu 1 295 -17 335 240 127 27 chrX 46385715 46385865 -116214065 - L1ME4a LINE L1 -75 6046 5882 201 167 0 0 chrX 46386279 46386315 -116213615 + (CATA)n Simple_repeat Simple_repeat 4 39 0 2358 101 0 3 chrX 46386641 46386948 -116212982 - AluSx SINE Alu -6 306 1 2503 74 3 0 chrX 46387063 46387362 -116212568 + AluSg SINE Alu 1 300 -10 320 282 176 0 chrX 46388187 46388329 -116211601 + MIR SINE MIR 69 235 -27 309 260 83 0 chrX 46388347 46388443 -116211487 + MIR SINE MIR 99 202 -60 921 281 78 8 chrX 46389494 46389750 -116210180 - MLT1J LTR MaLR -237 274 1 25 0 0 0 chrX 46390254 46390279 -116209651 + AT_rich Low_complexity Low_complexity 1 25 0 2431 97 0 3 chrX 46390549 46390860 -116209070 + AluSx SINE Alu 1 310 -2 2459 75 3 7 chrX 46390861 46391166 -116208764 + AluSx SINE Alu 1 304 -8 367 346 58 0 chrX 46391188 46391292 -116208638 - L1MC4 LINE L1 -1330 6712 6603 2448 61 0 61 chrX 46391667 46391997 -116207933 - AluSx SINE Alu 0 312 3 1487 154 24 48 chrX 46392192 46392464 -116207466 + MER33 DNA MER1_type 1 278 -2307 2444 82 0 7 chrX 46392464 46392767 -116207163 - AluSq SINE Alu -6 307 7 2423 109 0 0 chrX 46392772 46393083 -116206847 - AluSx SINE Alu 0 312 2 1487 154 24 48 chrX 46393083 46393136 -116206794 + MER33 DNA MER1_type 282 324 0 1519 178 178 10 chrX 46393180 46393580 -116206350 - L1MB7 LINE L1 0 6184 5718 23 0 0 0 chrX 46393791 46393814 -116206116 + AT_rich Low_complexity Low_complexity 1 23 0 188 308 25 42 chrX 46394077 46394197 -116205733 - L2 LINE L2 -524 2790 2673 376 192 64 0 chrX 46394298 46394376 -116205554 + L1M4 LINE L1 4495 4577 -1569 255 307 79 18 chrX 46394405 46394519 -116205411 - L1MB7 LINE L1 -521 5600 5480 4136 227 176 58 chrX 46394533 46394870 -116205060 + HAL1 LINE L1 1 297 -2210 2359 62 0 0 chrX 46394870 46395161 -116204769 + AluY SINE Alu 1 291 -20 4136 227 176 58 chrX 46395161 46395628 -116204302 + HAL1 LINE L1 297 708 -1799 1799 110 88 0 chrX 46395628 46395900 -116204030 + AluSx SINE Alu 6 301 -11 4136 227 176 58 chrX 46395900 46396561 -116203369 + HAL1 LINE L1 708 1290 -1217 2309 32 42 3 chrX 46396561 46396845 -116203085 + AluY SINE Alu 2 296 -15 4136 227 176 58 chrX 46396845 46397211 -116202719 + HAL1 LINE L1 1290 2049 -458 345 247 163 24 chrX 46397217 46397383 -116202547 + HAL1 LINE L1 2318 2506 -1 261 302 162 22 chrX 46398256 46398435 -116201495 + MIR SINE MIR 59 262 0 287 291 110 16 chrX 46398474 46398601 -116201329 + MIR SINE MIR 70 208 -54 195 220 80 0 chrX 46399443 46399493 -116200437 + MIR SINE MIR 92 145 -63 655 274 38 28 chrX 46399535 46399747 -116200183 - MIR SINE MIR 0 262 49 264 330 113 9 chrX 46402322 46402437 -116197493 - MER5A DNA MER1_type -27 162 36 * 423 247 21 0 chrX 46402364 46402457 -116197473 + MER5B DNA MER1_type 80 174 -4 248 281 16 0 chrX 46407099 46407163 -116192767 + CT-rich Low_complexity Low_complexity 3 67 0 25 0 0 0 chrX 46407441 46407466 -116192464 + AT_rich Low_complexity Low_complexity 1 25 0 210 202 146 45 chrX 46407579 46407668 -116192262 + MIR3 SINE MIR 8 105 -103 181 221 74 147 chrX 46407775 46407819 -116192111 + L2 LINE L2 2659 2694 -620 432 141 0 0 chrX 46407819 46407890 -116192040 - L1MB7 LINE L1 -9 6175 6105 181 221 74 147 chrX 46407890 46407940 -116191990 + L2 LINE L2 2694 2746 -568 706 174 19 46 chrX 46408108 46408429 -116191501 - L1MB8 LINE L1 0 6178 5819 243 241 228 0 chrX 46409406 46409485 -116190445 + L2 LINE L2 2985 3081 -191 553 261 37 8 chrX 46410396 46410530 -116189400 - MERVL LTR ERVL -1454 4310 4173 2171 183 101 68 chrX 46410532 46410992 -116188938 - MLT1E LTR MaLR -2 591 107 2241 78 7 0 chrX 46410992 46411285 -116188645 + AluSp SINE Alu 2 296 -17 2171 183 101 68 chrX 46411285 46411387 -116188543 - MLT1E LTR MaLR -486 107 10 365 311 68 6 chrX 46411418 46411595 -116188335 - MLT1E-int LTR MaLR -24 1347 1160 2140 60 60 0 chrX 46411624 46411905 -116188025 + AluY SINE Alu 1 298 -13 850 133 30 0 chrX 46411908 46412043 -116187887 - FLAM_C SINE Alu -4 139 1 647 193 13 145 chrX 46412043 46412271 -116187659 - MLT1E-int LTR MaLR -200 1171 974 2343 249 96 14 chrX 46412424 46413156 -116186774 - MERVL LTR ERVL -1451 4313 3522 913 239 124 32 chrX 46413453 46413801 -116186129 - MERVL LTR ERVL -3345 2140 1761 1025 248 113 39 chrX 46414142 46414557 -116185373 - MLT1J1 LTR MaLR 0 446 1 318 360 17 24 chrX 46414558 46414855 -116185075 - MERVL LTR ERVL -4379 1385 1091 1334 188 4 4 chrX 46414856 46415122 -116184808 + L1M4 LINE L1 3659 3924 -2222 1805 156 0 20 chrX 46415124 46415426 -116184504 + AluJo SINE Alu 1 296 -16 3505 190 156 17 chrX 46415437 46415793 -116184137 + L1M4 LINE L1 4276 4581 -1565 2249 83 0 19 chrX 46415793 46416105 -116183825 + AluSg SINE Alu 1 306 -4 3505 190 156 17 chrX 46416105 46416199 -116183731 + L1M4 LINE L1 4581 4661 -1485 1617 139 0 93 chrX 46416199 46416523 -116183407 - AluJo SINE Alu -18 294 1 3505 190 156 17 chrX 46416523 46416999 -116182931 + L1M4 LINE L1 4661 5338 -808 1726 91 4 0 chrX 46416999 46417229 -116182701 + AluSx SINE Alu 1 231 -81 3505 190 156 17 chrX 46417229 46417242 -116182688 + L1M4 LINE L1 5338 5348 -798 2266 79 7 0 chrX 46417283 46417587 -116182343 + AluSp SINE Alu 1 306 -7 2351 53 0 0 chrX 46417588 46417872 -116182058 + AluY SINE Alu 11 294 -17 302 65 0 0 chrX 46417970 46418016 -116181914 - Alu SINE Alu 0 302 257 388 275 100 31 chrX 46418024 46418184 -116181746 - MERVL LTR ERVL -4742 1022 852 460 331 39 31 chrX 46418232 46418489 -116181441 - MERVL LTR ERVL -5061 703 445 27 0 0 0 chrX 46418521 46418548 -116181382 + AT_rich Low_complexity Low_complexity 1 27 0 1747 134 25 4 chrX 46418548 46418684 -116181246 + AluSx SINE Alu 1 133 -179 2104 38 8 8 chrX 46418684 46418946 -116180984 + AluY SINE Alu 47 308 -3 1747 134 25 4 chrX 46418946 46419085 -116180845 + AluSx SINE Alu 133 282 -30 6633 125 26 9 chrX 46419085 46420042 -116179888 - L1MC1 LINE L1 -21 6312 5327 657 204 15 8 chrX 46420042 46420174 -116179756 - FLAM_A SINE Alu 0 133 1 6633 125 26 9 chrX 46420174 46420324 -116179606 - L1MC1 LINE L1 -1006 5327 5181 539 125 0 0 chrX 46420324 46420404 -116179526 - AluSg/x SINE Alu -14 298 219 2125 112 3 0 chrX 46420415 46420711 -116179219 - AluSq SINE Alu -14 299 3 983 98 8 0 chrX 46420714 46420847 -116179083 - AluSq/x SINE Alu -176 136 3 1053 217 4 0 chrX 46420848 46421074 -116178856 - L1MC1 LINE L1 -958 5188 4962 1743 149 7 0 chrX 46421509 46421785 -116178145 + AluJb SINE Alu 1 278 -34 956 153 18 24 chrX 46422277 46422447 -116177483 - AluJo SINE Alu -23 289 121 568 114 0 88 chrX 46422448 46422562 -116177368 - MER50 LTR ERV1 -134 600 497 811 191 0 0 chrX 46422562 46422698 -116177232 - AluJo SINE Alu -175 137 2 556 230 51 22 chrX 46422790 46422968 -116176962 - L1ME3A LINE L1 -190 5963 5781 991 164 26 36 chrX 46422995 46423190 -116176740 + LOR1b LTR ERV1 79 271 -190 * 1536 136 122 18 chrX 46423176 46423462 -116176468 + LOR1a LTR ERV1 182 497 0 1210 255 88 84 chrX 46423462 46423597 -116176333 - L1ME3A LINE L1 -360 5785 5652 2323 90 0 0 chrX 46423597 46423897 -116176033 - AluSx SINE Alu -12 300 1 1210 255 88 84 chrX 46423897 46424172 -116175758 - L1ME3A LINE L1 -493 5652 5380 1527 143 37 50 chrX 46424172 46424472 -116175458 - AluJo SINE Alu -16 296 1 1210 255 88 84 chrX 46424472 46424781 -116175149 - L1ME3A LINE L1 -765 5380 5074 832 110 0 59 chrX 46424781 46424917 -116175013 + FLAM_C SINE Alu 1 128 -5 1210 255 88 84 chrX 46424917 46425190 -116174740 - L1ME3A LINE L1 -1071 5074 4804 2136 88 6 44 chrX 46425190 46425508 -116174422 - AluSx SINE Alu -6 306 1 1210 255 88 84 chrX 46425508 46425817 -116174113 - L1ME3A LINE L1 -1341 4804 4479 1752 145 11 0 chrX 46425821 46426097 -116173833 - AluJb SINE Alu -15 297 19 1408 165 0 0 chrX 46426106 46426330 -116173600 - AluJb SINE Alu -6 306 83 2123 110 0 0 chrX 46426330 46426622 -116173308 - AluSq SINE Alu -20 293 2 250 240 62 58 chrX 46426630 46426838 -116173092 - L1 LINE L1 -1653 4493 4285 313 222 51 45 chrX 46426922 46427098 -116172832 - L1ME3A LINE L1 -5022 1097 921 219 36 0 0 chrX 46427525 46427553 -116172377 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 2220 106 0 6 chrX 46427553 46427966 -116171964 - AluSx SINE Alu 0 411 1 2133 153 3 12 chrX 46429130 46429469 -116170461 + MLT1A1 LTR MaLR 12 347 -18 1141 218 58 19 chrX 46430123 46430384 -116169546 + L1MC4 LINE L1 7640 7910 -132 519 170 18 9 chrX 46430667 46430772 -116169158 + MLT2D LTR ERVL 1 109 -305 267 31 0 0 chrX 46430772 46430804 -116169126 + (CATA)n Simple_repeat Simple_repeat 4 35 0 828 139 21 14 chrX 46430813 46430957 -116168973 - AluJb SINE Alu -32 280 136 2122 108 16 3 chrX 46430958 46431263 -116168667 - AluSx SINE Alu -3 309 1 1323 80 62 0 chrX 46431263 46431439 -116168491 - LTR9B LTR ERV1 -457 187 1 16707 102 23 12 chrX 46431446 46434025 -116165905 - HUERS-P3b LTR ERV1 -13 7405 2124 6092 75 15 15 chrX 46434019 46434821 -116165109 - HUERS-P3b LTR ERV1 -3544 3874 3073 * 720 217 0 0 chrX 46434821 46434950 -116164980 + LTR8 LTR ERV1 1 129 -562 950 82 82 0 chrX 46434953 46435088 -116164842 - LTR9B LTR ERV1 -498 146 1 2304 147 25 54 chrX 46435843 46436284 -116163646 + LTR3 LTR ERVK 5 432 0 6572 113 33 5 chrX 46436285 46437250 -116162680 + HERVK3 LTR ERVK 41 1032 -6211 * 10537 119 17 8 chrX 46437248 46438808 -116161122 + HERVK3 LTR ERVK 1336 2910 -4333 8421 109 25 2 chrX 46438795 46440007 -116159923 + HERVK3 LTR ERVK 4119 5358 -1885 * 600 137 0 11 chrX 46440026 46440121 -116159809 + HERVK3 LTR ERVK 7150 7243 0 2203 147 28 63 chrX 46440125 46440554 -116159376 + LTR3 LTR ERVK 5 418 -14 2260 73 0 0 chrX 46440937 46441224 -116158706 - AluY SINE Alu -24 287 1 247 180 120 0 chrX 46441529 46441579 -116158351 - AluS SINE Alu -205 97 42 23817 144 42 16 chrX 46442882 46443456 -116156474 + ERVL-B1 LTR ERVL 1784 2342 -3422 2662 141 26 60 chrX 46443456 46443959 -116155971 + LTR19A LTR ERV1 1 486 0 23817 144 42 16 chrX 46443959 46444290 -116155640 + ERVL-B1 LTR ERVL 2342 2663 -3101 1958 173 0 10 chrX 46444290 46444603 -116155327 - AluJo SINE Alu 0 312 3 23817 144 42 16 chrX 46444603 46444825 -116155105 + ERVL-B1 LTR ERVL 2663 2878 -2886 2351 104 0 7 chrX 46444825 46445133 -116154797 - AluSx SINE Alu -6 306 1 716 200 0 15 chrX 46445137 46445267 -116154663 - FLAM_C SINE Alu -5 128 1 23817 144 42 16 chrX 46445267 46445352 -116154578 + ERVL-B1 LTR ERVL 2880 2961 -2803 2316 138 25 0 chrX 46445352 46445707 -116154223 + THE1B LTR MaLR 1 364 0 23817 144 42 16 chrX 46445707 46448359 -116151571 + ERVL-B1 LTR ERVL 2961 5757 -7 1604 215 85 57 chrX 46448359 46448865 -116151065 + MLT2B1 LTR ERVL 1 520 0 890 228 0 0 chrX 46448935 46449093 -116150837 - FAM SINE Alu -17 158 1 691 164 55 0 chrX 46449109 46449237 -116150693 + AluJo SINE Alu 2 136 -176 42 65 0 0 chrX 46449237 46449314 -116150616 + AT_rich Low_complexity Low_complexity 1 77 0 8418 31 5 0 chrX 46449416 46451177 -116148753 - L1PA4 LINE L1 -3 6152 4393 28231 50 11 0 chrX 46451189 46454647 -116145283 - L1PA4 LINE L1 -2649 3497 2 1882 121 0 0 chrX 46455004 46455252 -116144678 - AluSx SINE Alu -64 248 1 1841 156 7 0 chrX 46455260 46455542 -116144388 - AluSx SINE Alu -18 294 11 2370 94 0 0 chrX 46457052 46457349 -116142581 + AluSg SINE Alu 1 297 -13 198 270 0 0 chrX 46458021 46458095 -116141835 + GA-rich Low_complexity Low_complexity 1 74 0 2193 130 3 0 chrX 46458486 46458786 -116141144 - AluSq SINE Alu -12 301 1 21 57 0 0 chrX 46458836 46458871 -116141059 + AT_rich Low_complexity Low_complexity 1 35 0 646 287 61 65 chrX 46459014 46459144 -116140786 - L1ME LINE L1 -434 5730 5601 2203 117 0 13 chrX 46459144 46459451 -116140479 - AluSx SINE Alu -9 303 1 646 287 61 65 chrX 46459451 46459763 -116140167 - L1ME LINE L1 -563 5601 5290 181 79 0 53 chrX 46459784 46459822 -116140108 + (TCC)n Simple_repeat Simple_repeat 1 36 0 1535 195 13 33 chrX 46459822 46460129 -116139801 - AluJo SINE Alu -11 301 1 704 299 108 29 chrX 46460140 46460423 -116139507 - L1ME LINE L1 -856 5290 5031 2229 106 0 22 chrX 46460423 46460734 -116139196 - AluSx SINE Alu -8 304 1 704 299 108 29 chrX 46460734 46460939 -116138991 - L1ME LINE L1 -1115 5031 4763 1465 101 5 0 chrX 46460942 46461131 -116138799 - AluSp SINE Alu -12 301 112 1263 72 7 0 chrX 46461133 46461285 -116138645 - AluSp SINE Alu -160 153 1 252 230 43 32 chrX 46461293 46461311 -116138619 + L1M4 LINE L1 3099 3115 -3031 2118 102 48 0 chrX 46461311 46461605 -116138325 + AluSp SINE Alu 1 308 -5 252 230 43 32 chrX 46461605 46461773 -116138157 + L1M4 LINE L1 3115 3287 -2859 2343 71 3 17 chrX 46461880 46462174 -116137756 - AluSp SINE Alu -14 299 10 379 100 0 0 chrX 46462175 46462225 -116137705 - Alu SINE Alu -252 50 1 309 298 109 34 chrX 46462253 46462575 -116137355 + L1M4 LINE L1 3350 3695 -2451 1850 160 14 0 chrX 46462626 46462934 -116136996 + AluSq SINE Alu 1 312 0 342 0 0 0 chrX 46462934 46462972 -116136958 + (TA)n Simple_repeat Simple_repeat 2 39 0 1018 128 70 0 chrX 46462972 46463128 -116136802 + FRAM SINE Alu 1 167 -9 2123 103 3 3 chrX 46463128 46463441 -116136489 + AluSq SINE Alu 1 313 0 2378 98 0 0 chrX 46465289 46465586 -116134344 - AluSq SINE Alu -16 297 1 1887 171 10 0 chrX 46466281 46466579 -116133351 - AluJo SINE Alu -10 302 2 320 346 28 28 chrX 46467057 46467268 -116132662 - L1ME LINE L1 -632 5534 5324 3890 199 47 25 chrX 46467396 46468317 -116131613 - L1ME LINE L1 -1483 4663 3723 504 219 121 125 chrX 46468980 46469125 -116130805 - MIR SINE MIR 0 262 117 390 85 34 0 chrX 46469125 46469184 -116130746 - U7 snRNA snRNA -1 62 2 504 219 121 125 chrX 46469184 46469294 -116130636 - MIR SINE MIR -145 117 8 2052 134 0 0 chrX 46469499 46469816 -116130114 + AluSx SINE Alu 1 317 0 332 200 0 96 chrX 46469821 46469956 -116129974 + HAL1 LINE L1 945 1066 -1441 343 279 79 64 chrX 46469980 46470245 -116129685 + L1MDa LINE L1 1732 2000 -4540 2314 87 33 0 chrX 46470277 46470397 -116129533 + AluY SINE Alu 1 116 -195 297 0 0 0 chrX 46470397 46470430 -116129500 + (CA)n Simple_repeat Simple_repeat 2 34 0 2314 87 33 0 chrX 46470430 46470609 -116129321 + AluY SINE Alu 116 310 -1 282 285 44 24 chrX 46471058 46471202 -116128728 + L1M4 LINE L1 3699 3847 -2299 302 317 142 42 chrX 46471208 46471448 -116128482 + L2 LINE L2 3004 3267 -5 234 327 44 0 chrX 46471475 46471588 -116128342 + L3 LINE CR1 675 792 -785 1824 220 49 27 chrX 46472226 46472817 -116127113 - L2 LINE L2 0 3313 2709 700 207 20 25 chrX 46472828 46473026 -116126904 + HAL1 LINE L1 1980 2176 -331 3482 265 83 35 chrX 46473027 46473533 -116126397 + L1MEd LINE L1 832 1312 -4817 354 45 0 0 chrX 46473533 46473577 -116126353 + (CTA)n Simple_repeat Simple_repeat 3 46 0 3482 265 83 35 chrX 46473577 46475589 -116124341 + L1MEd LINE L1 1312 3500 -2629 1409 263 99 31 chrX 46476621 46477321 -116122609 + L1MEd LINE L1 3493 4239 -1890 3401 184 88 80 chrX 46477326 46478356 -116121574 + L1MC3 LINE L1 6747 7785 0 2338 93 0 7 chrX 46478365 46478675 -116121255 + AluSx SINE Alu 1 308 -4 1891 95 4 4 chrX 46478675 46478917 -116121013 + AluSx SINE Alu 32 273 -39 217 0 29 29 chrX 46478928 46478962 -116120968 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 870 261 123 74 chrX 46478984 46479330 -116120600 + L1MEd LINE L1 4280 4607 -1522 1836 155 7 3 chrX 46479330 46479614 -116120316 + AluJb SINE Alu 1 285 -27 870 261 123 74 chrX 46479614 46479647 -116120283 + L1MEd LINE L1 4607 4637 -1492 1686 170 11 7 chrX 46479647 46479952 -116119978 + AluJb SINE Alu 1 306 0 870 261 123 74 chrX 46479952 46480317 -116119613 + L1MEd LINE L1 4637 5063 -1066 1396 112 8 80 chrX 46480382 46480631 -116119299 + AluJb SINE Alu 82 312 0 1705 250 132 18 chrX 46480631 46480761 -116119169 + L1MEd LINE L1 5140 5254 -899 586 246 15 22 chrX 46480761 46480889 -116119041 + FLAM_A SINE Alu 1 128 0 1980 155 0 0 chrX 46480889 46481185 -116118745 - AluJb SINE Alu -14 298 3 1705 250 132 18 chrX 46481190 46481746 -116118184 + L1MEd LINE L1 5254 5745 -408 2414 74 7 16 chrX 46481746 46482055 -116117875 + AluSx SINE Alu 1 306 -6 189 0 0 0 chrX 46482055 46482076 -116117854 + (CA)n Simple_repeat Simple_repeat 2 22 0 1705 250 132 18 chrX 46482076 46482105 -116117825 + L1MEd LINE L1 5744 5920 -233 2260 113 10 0 chrX 46482365 46482666 -116117264 - AluSx SINE Alu -8 304 1 329 250 62 28 chrX 46482709 46482853 -116117077 - L2 LINE L2 -1488 1826 1678 467 267 52 30 chrX 46482858 46483103 -116116827 + L1M4b LINE L1 16 549 -6306 1065 273 32 43 chrX 46483135 46483480 -116116450 + L1M4b LINE L1 848 1188 -5667 267 208 47 47 chrX 46483557 46483663 -116116267 + L1M4b LINE L1 1193 1298 -5557 6449 179 235 20 chrX 46483712 46485319 -116114611 + L1M3e LINE L1 6 1958 -5072 754 127 0 8 chrX 46485320 46485438 -116114492 + FLAM_C SINE Alu 2 118 -25 2019 129 0 20 chrX 46485463 46485757 -116114173 + AluJb SINE Alu 3 290 -22 2382 85 0 31 chrX 46485785 46486102 -116113828 + AluSx SINE Alu 1 307 -5 414 132 33 22 chrX 46486113 46486204 -116113726 + L1M3e LINE L1 1954 2045 -4985 24792 29 3 1 chrX 46486304 46489644 -116110286 + L1P1 LINE L1 2459 5805 -350 3694 32 0 0 chrX 46489745 46490180 -116109750 - L1P1 LINE L1 -366 5789 5355 7867 20 0 2 chrX 46490180 46491463 -116108467 + L1PA4 LINE L1 4872 6152 -3 2636 98 5 3 chrX 46491463 46491849 -116108081 + L1MA2 LINE L1 5760 6146 -158 259 255 0 0 chrX 46692632 46692686 -115907244 - MIR SINE MIR -92 116 63 758 150 231 12 chrX 46693079 46693252 -115906678 - MER46A DNA MER2_type 0 236 26 584 126 23 23 chrX 46693694 46693809 -115906121 - AluJb SINE Alu 0 312 201 204 40 0 0 chrX 46696028 46696053 -115903877 + (A)n Simple_repeat Simple_repeat 1 25 0 630 189 63 119 chrX 46696073 46696375 -115903555 + L1ME2 LINE L1 5725 6009 -155 1806 147 33 0 chrX 46696424 46696739 -115903191 + AluSx SINE Alu 1 324 0 340 288 144 25 chrX 46697343 46697461 -115902469 - L2 LINE L2 -1 3271 3140 219 36 0 0 chrX 46697534 46697562 -115902368 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 2146 140 0 7 chrX 46698822 46699129 -115900801 + AluSq SINE Alu 1 305 -8 22 0 0 0 chrX 46699129 46699151 -115900779 + AT_rich Low_complexity Low_complexity 1 22 0 320 301 26 53 chrX 46699236 46699349 -115900581 - MIR3 SINE MIR -21 187 78 305 354 96 11 chrX 46699642 46699820 -115900110 - MIR SINE MIR -4 258 66 1805 122 0 0 chrX 46700119 46700365 -115899565 - AluSx SINE Alu -64 248 3 1212 159 142 4 chrX 46700809 46701042 -115898888 - AluJb SINE Alu -47 265 1 254 225 14 14 chrX 46702593 46702664 -115897266 - L1ME LINE L1 -299 5822 5752 252 241 98 45 chrX 46702726 46702838 -115897092 - L1ME LINE L1 -483 5638 5521 299 208 139 0 chrX 46703477 46703549 -115896381 - L2 LINE L2 -20 3252 3171 190 307 159 15 chrX 46703564 46703828 -115896102 + L2 LINE L2 1793 2094 -1220 186 263 0 35 chrX 46703843 46703900 -115896030 - L2 LINE L2 -588 2726 2672 15969 134 60 13 chrX 46704679 46707272 -115892658 - Tigger2 DNA MER2_type -3 2715 1 1159 148 124 5 chrX 46708506 46708716 -115891214 - MER46A DNA MER2_type -1 235 1 200 59 29 0 chrX 46709324 46709358 -115890572 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2390 62 3 0 chrX 46709361 46709649 -115890281 - AluY SINE Alu -22 289 1 1671 156 219 3 chrX 46710307 46710659 -115889271 - MSTA LTR MaLR 0 428 1 230 238 32 0 chrX 46711973 46712036 -115887894 - L1ME LINE L1 -516 5605 5541 345 291 63 16 chrX 46714607 46714734 -115885196 + L1ME LINE L1 5531 5663 -458 191 303 221 0 chrX 46715568 46715713 -115884217 + MIR3 SINE MIR 4 180 -28 1659 158 106 62 chrX 46716470 46716530 -115883400 - MSTD LTR MaLR 0 396 340 1886 147 0 27 chrX 46716530 46716829 -115883101 + AluJb SINE Alu 1 291 -21 1659 158 106 62 chrX 46716829 46717136 -115882794 - MSTD LTR MaLR -56 340 13 1151 108 179 5 chrX 46717524 46717719 -115882211 - MER30 DNA MER1_type 0 230 2 205 317 58 29 chrX 46717989 46718093 -115881837 + MIR3 SINE MIR 88 194 -14 252 86 0 0 chrX 46719179 46719214 -115880716 + (T)n Simple_repeat Simple_repeat 1 35 0 219 360 14 58 chrX 46719386 46719525 -115880405 - L2 LINE L2 -25 3247 3115 455 165 76 25 chrX 46719548 46719627 -115880303 + AluY SINE Alu 3 85 -233 * 809 152 214 0 chrX 46719620 46719765 -115880165 + AluSg/x SINE Alu 128 303 -6 650 308 93 9 chrX 46720420 46720741 -115879189 + L1ME LINE L1 5457 5804 -317 555 226 71 36 chrX 46721973 46722356 -115877574 + L1MC4a LINE L1 7373 7723 -98 250 265 44 0 chrX 46722459 46722527 -115877403 + L1MC4 LINE L1 7952 8022 -20 6478 68 16 37 chrX 46722553 46723702 -115876228 - SVA Other Other -551 1386 433 5774 60 21 81 chrX 46723721 46725031 -115874899 - SVA Other Other -518 868 1 26 0 0 0 chrX 46725044 46725070 -115874860 + AT_rich Low_complexity Low_complexity 1 26 0 255 192 39 0 chrX 46725522 46725574 -115874356 - LTR43-int LTR ERV1 -3576 1222 1169 194 319 131 77 chrX 46727968 46728228 -115871702 - L2 LINE L2 -31 3241 2968 1762 88 0 18 chrX 46728878 46729105 -115870825 + AluSq SINE Alu 1 223 -90 705 198 0 8 chrX 46729118 46729239 -115870691 + AluSp/q SINE Alu 172 291 -22 265 324 173 15 chrX 46729331 46729667 -115870263 - L2 LINE L2 -645 2669 2281 1637 225 165 51 chrX 46730052 46730859 -115869071 - L1ME3 LINE L1 -3 6159 5250 1762 153 55 4 chrX 46730881 46731156 -115868774 - AluJo SINE Alu -23 289 1 454 311 92 5 chrX 46731263 46731484 -115868446 - MIR SINE MIR -8 254 17 620 153 72 0 chrX 46731621 46731732 -115868198 - L1MB5 LINE L1 -8 6166 6048 185 125 75 113 chrX 46731915 46731995 -115867935 + L2 LINE L2 3177 3253 -19 954 190 25 13 chrX 46732204 46732362 -115867568 + FAM SINE Alu 5 164 -11 29 47 0 0 chrX 46732363 46732406 -115867524 + AT_rich Low_complexity Low_complexity 1 43 0 210 250 0 0 chrX 46732502 46732546 -115867384 + MIR SINE MIR 110 153 -109 23 0 0 0 chrX 46733133 46733156 -115866774 + AT_rich Low_complexity Low_complexity 1 23 0 1673 133 53 21 chrX 46733161 46733446 -115866484 + AluJo SINE Alu 1 294 -18 286 233 90 109 chrX 46734305 46734571 -115865359 - L1MC5 LINE L1 -375 7586 7326 316 267 48 36 chrX 46734712 46734877 -115865053 - L1MC4 LINE L1 -761 7281 7115 268 264 11 11 chrX 46735088 46735179 -115864751 - L1MC4 LINE L1 -1040 7002 6912 1032 285 109 25 chrX 46735290 46735777 -115864153 - L1MC4 LINE L1 -149 7893 7366 883 159 40 7 chrX 46735778 46735929 -115864001 + AluJo SINE Alu 46 201 -111 760 171 108 0 chrX 46736032 46736161 -115863769 - FLAM_C SINE Alu 0 143 1 452 297 81 0 chrX 46736163 46736311 -115863619 - L1MC4 LINE L1 -1116 6926 6767 235 188 0 0 chrX 46736311 46736359 -115863571 + LTR66 LTR ERVL 391 438 -172 330 123 0 0 chrX 46736360 46736417 -115863513 + (CATA)n Simple_repeat Simple_repeat 4 60 0 487 185 0 0 chrX 46736597 46736678 -115863252 + FLAM SINE Alu 45 125 -18 431 201 106 0 chrX 46739176 46739289 -115860641 - MIR SINE MIR -67 141 37 204 135 0 0 chrX 46740175 46740212 -115859718 + (GGA)n Simple_repeat Simple_repeat 3 39 0 228 231 46 146 chrX 46741189 46741319 -115858611 + MIR3 SINE MIR 91 207 -1 453 279 177 28 chrX 46741362 46741783 -115858147 - L2 LINE L2 -8 3264 2550 256 271 243 0 chrX 46742358 46742465 -115857465 - L2 LINE L2 -3 3310 3178 21 0 0 0 chrX 46745579 46745600 -115854330 + AT_rich Low_complexity Low_complexity 1 21 0 2322 108 0 3 chrX 46746387 46746693 -115853237 + AluSx SINE Alu 1 305 -7 2041 143 7 3 chrX 46746703 46746997 -115852933 + AluJb SINE Alu 1 295 -17 730 113 81 65 chrX 46747978 46748102 -115851828 + FLAM_C SINE Alu 2 127 -6 348 259 89 9 chrX 46748124 46748236 -115851694 - MIR SINE MIR -68 140 20 1857 128 0 0 chrX 46748482 46748769 -115851161 - AluSx SINE Alu 0 320 34 282 318 94 47 chrX 46749262 46749454 -115850476 + MIR SINE MIR 4 204 -58 1605 183 11 14 chrX 46749619 46749904 -115850026 + AluJo SINE Alu 1 284 -28 226 370 58 45 chrX 46750812 46750966 -115848964 - MIR3 SINE MIR -51 157 2 367 263 10 0 chrX 46751273 46751372 -115848558 + MIR SINE MIR 45 144 -118 1904 148 3 3 chrX 46751380 46751670 -115848260 + AluSx SINE Alu 1 290 -22 182 185 0 0 chrX 46751743 46751770 -115848160 + L2 LINE L2 3263 3289 -24 261 329 136 0 chrX 46752650 46752790 -115847140 - MIR SINE MIR -56 206 48 363 257 108 47 chrX 46752799 46752947 -115846983 - MIR SINE MIR 0 262 106 231 190 0 0 chrX 46753565 46753623 -115846307 + (CCA)n Simple_repeat Simple_repeat 3 60 0 213 210 0 0 chrX 46753914 46753976 -115845954 + CT-rich Low_complexity Low_complexity 1 62 0 457 212 0 0 chrX 46754349 46754434 -115845496 + AluJ/FRAM SINE Alu 214 298 -14 269 266 192 87 chrX 46755018 46755247 -115844683 + L2 LINE L2 3000 3252 -20 245 279 89 0 chrX 46755467 46755546 -115844384 - MIR3 SINE MIR -45 163 78 553 219 43 82 chrX 46755776 46756009 -115843921 - MIR SINE MIR -8 254 31 441 0 0 0 chrX 46758287 46758336 -115841594 + (CA)n Simple_repeat Simple_repeat 2 50 0 2102 104 14 10 chrX 46758994 46759283 -115840647 - AluSx SINE Alu -22 290 1 1398 224 0 4 chrX 46759301 46759560 -115840370 - AluJo SINE Alu -15 297 40 2265 105 0 22 chrX 46759564 46759877 -115840053 - AluSx SINE Alu -6 306 1 397 202 264 0 chrX 46759891 46760020 -115839910 + MIR SINE MIR 53 215 -47 263 276 0 17 chrX 46760205 46760263 -115839667 - MIR SINE MIR -164 98 42 2326 88 7 0 chrX 46760606 46760901 -115839029 + AluSg SINE Alu 1 297 -13 414 186 12 0 chrX 46761161 46761247 -115838683 + Charlie5 DNA MER1_type 30 116 -2496 461 183 11 21 chrX 46761866 46761959 -115837971 - L1MEc LINE L1 -6271 125 34 1252 244 79 51 chrX 46761976 46762430 -115837500 + L2 LINE L2 241 707 -2607 909 130 0 36 chrX 46762437 46762575 -115837355 + FLAM_C SINE Alu 1 133 0 366 98 0 0 chrX 46762580 46762631 -115837299 + MER66A LTR ERV1 287 337 -141 2010 152 0 0 chrX 46762677 46762966 -115836964 + AluJb SINE Alu 4 292 -20 1309 89 5 0 chrX 46762995 46763185 -115836745 + Tigger4(Zombi) DNA MER2_type 2541 2731 0 914 141 31 0 chrX 46763185 46763348 -115836582 - L1M4 LINE L1 -391 5783 5616 1724 205 39 39 chrX 46763435 46763844 -115836086 + LTR2 LTR ERV1 41 449 0 2287 102 0 13 chrX 46763853 46764157 -115835773 - AluSc SINE Alu -9 300 1 189 0 0 0 chrX 46764159 46764180 -115835750 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1840 138 36 18 chrX 46764181 46764457 -115835473 - AluSx SINE Alu -31 281 1 540 207 0 0 chrX 46764462 46764573 -115835357 - Tigger2 DNA MER2_type -2606 112 2 1154 183 53 8 chrX 46764575 46764821 -115835109 + LTR54 LTR ERV1 254 510 0 1033 130 169 73 chrX 46764905 46765029 -115834901 - LTR49 LTR ERV1 0 595 484 1632 159 82 55 chrX 46765029 46765322 -115834608 + THE1C LTR MaLR 1 307 -68 2216 129 6 0 chrX 46765322 46765633 -115834297 + AluSq SINE Alu 1 313 0 1632 159 82 55 chrX 46765633 46765704 -115834226 + THE1C LTR MaLR 307 375 0 1033 130 169 73 chrX 46765704 46765880 -115834050 - LTR49 LTR ERV1 -111 484 266 740 154 0 0 chrX 46765880 46765984 -115833946 + AluSq/x SINE Alu 2 105 -207 628 174 0 9 chrX 46766093 46766202 -115833728 - Tigger3(Golem) DNA MER2_type -2921 108 1 1610 123 0 0 chrX 46766237 46766456 -115833474 - AluSx SINE Alu -93 219 1 672 248 13 0 chrX 46766456 46766609 -115833321 + MSTB LTR MaLR 45 199 -227 2051 124 30 7 chrX 46766610 46766909 -115833021 + AluSx SINE Alu 1 306 -6 575 97 9 35 chrX 46766924 46767037 -115832893 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 264 202 34 79 chrX 46767037 46767126 -115832804 + MSTB LTR MaLR 189 273 -159 933 183 18 0 chrX 46767128 46767297 -115832633 - MER58 DNA MER1_type -2248 172 1 1110 209 69 69 chrX 46767311 46767647 -115832283 + MLT1L LTR MaLR 180 518 -97 1406 145 44 4 chrX 46767647 46767874 -115832056 + MER46A DNA MER2_type 1 236 0 1110 209 69 69 chrX 46767874 46767915 -115832015 + MLT1L LTR MaLR 517 557 -58 2374 97 10 10 chrX 46767917 46768226 -115831704 - AluSp SINE Alu -4 309 1 533 192 42 0 chrX 46768317 46768437 -115831493 + L1ME1 LINE L1 5144 5268 -878 587 180 0 0 chrX 46768437 46768537 -115831393 - Tigger7 DNA MER2_type 0 2487 2388 * 1449 181 0 23 chrX 46768534 46768799 -115831131 - Tigger7 DNA MER2_type -466 267 9 1623 159 69 72 chrX 46768803 46768911 -115831019 - MSTB1 LTR MaLR -8 424 317 1773 143 21 21 chrX 46768911 46769191 -115830739 + AluJo SINE Alu 1 280 -32 196 0 118 0 chrX 46769191 46769225 -115830705 + A-rich Low_complexity Low_complexity 3 40 0 1623 159 69 72 chrX 46769225 46769505 -115830425 - MSTB1 LTR MaLR -113 319 36 8775 187 29 12 chrX 46769519 46769598 -115830332 - MSTB1-int LTR MaLR 0 1651 1575 1778 159 10 17 chrX 46769598 46769893 -115830037 - AluJb SINE Alu -5 307 15 8775 187 29 12 chrX 46769893 46770979 -115828951 - MSTB1-int LTR MaLR -76 1575 509 2206 130 3 0 chrX 46770979 46771279 -115828651 - AluSq SINE Alu -12 301 1 8775 187 29 12 chrX 46771279 46771392 -115828538 - MSTB1-int LTR MaLR -1142 509 399 2397 75 0 0 chrX 46771392 46771686 -115828244 - AluY SINE Alu -17 294 1 8775 187 29 12 chrX 46771686 46772029 -115827901 - MSTB1-int LTR MaLR -1252 399 1 1233 188 53 0 chrX 46772029 46772274 -115827656 - MSTB1 LTR MaLR 0 432 175 885 150 0 0 chrX 46772275 46772408 -115827522 + AluJo SINE Alu 2 134 -178 731 191 53 75 chrX 46772422 46772556 -115827374 - MSTB1 LTR MaLR -242 184 54 2603 61 0 3 chrX 46772556 46772867 -115827063 - AluY SINE Alu -1 310 1 731 191 53 75 chrX 46772867 46772920 -115827010 - MSTB1 LTR MaLR -372 54 1 2410 204 36 88 chrX 46772921 46773288 -115826642 + L1ME1 LINE L1 5257 5642 -524 10578 68 14 16 chrX 46773288 46774677 -115825253 - SVA Other Other 0 1386 1 2410 204 36 88 chrX 46774677 46774894 -115825036 + L1ME1 LINE L1 5642 5790 -376 1602 156 24 73 chrX 46774894 46775222 -115824708 + AluJo SINE Alu 1 312 0 2410 204 36 88 chrX 46775222 46775445 -115824485 + L1ME1 LINE L1 5790 6023 -143 2239 124 0 0 chrX 46775445 46775736 -115824194 + AluSx SINE Alu 1 291 -21 2029 153 52 30 chrX 46775759 46776304 -115823626 + MLT2A2 LTR ERVL 1 554 0 324 254 35 35 chrX 46776306 46776420 -115823510 + L1MB7 LINE L1 6071 6184 0 2405 103 3 0 chrX 46776450 46776761 -115823169 - AluSx SINE Alu 0 312 1 606 112 11 0 chrX 46776925 46777014 -115822916 + L1MC2 LINE L1 6247 6336 -8 554 292 56 0 chrX 46777319 46777497 -115822433 + MER5A DNA MER1_type 1 188 -1 2189 116 3 0 chrX 46777812 46778106 -115821824 - AluSx SINE Alu -17 295 1 279 0 0 0 chrX 46778811 46778842 -115821088 + (CA)n Simple_repeat Simple_repeat 2 32 0 923 253 133 37 chrX 46778922 46779381 -115820549 - MLT1L LTR MaLR -108 507 5 1402 223 150 28 chrX 46780809 46781302 -115818628 + LTR67 LTR ERVL 4 556 -1 499 208 46 8 chrX 46782151 46782281 -115817649 + L1ME1 LINE L1 6015 6149 -17 609 231 16 0 chrX 46782289 46782410 -115817520 + FLAM_A SINE Alu 2 124 -9 2409 65 0 0 chrX 46782417 46782707 -115817223 + AluY SINE Alu 1 290 -21 1860 180 0 3 chrX 46782884 46783184 -115816746 - AluJo SINE Alu -13 299 1 895 139 0 0 chrX 46783196 46783325 -115816605 - FLAM_C SINE Alu -4 129 1 2121 149 0 9 chrX 46783452 46783767 -115816163 + AluJb SINE Alu 1 312 0 830 203 7 7 chrX 46784037 46784190 -115815740 + MER5B DNA MER1_type 1 153 -25 2174 143 2 56 chrX 46784248 46784315 -115815615 - MLT1B LTR MaLR 0 390 321 2503 66 10 3 chrX 46784315 46784619 -115815311 + AluSc SINE Alu 1 306 -3 2174 143 2 56 chrX 46784619 46784963 -115814967 - MLT1B LTR MaLR -69 321 1 2422 81 3 0 chrX 46784997 46785294 -115814636 - AluSq SINE Alu -15 298 1 420 211 139 53 chrX 46786063 46786271 -115813659 + L1MC4 LINE L1 7505 7730 -312 483 266 80 13 chrX 46786330 46786556 -115813374 + L1ME4a LINE L1 5877 6117 -4 1776 146 65 4 chrX 46786583 46786858 -115813072 + AluJo SINE Alu 1 292 -20 2143 104 10 10 chrX 46786886 46787183 -115812747 + AluJb SINE Alu 1 297 -15 2513 87 0 0 chrX 46787656 46787965 -115811965 + AluSg SINE Alu 1 309 -1 724 156 23 0 chrX 46788135 46788263 -115811667 - MLT1D LTR MaLR 0 505 375 832 102 23 0 chrX 46788272 46788400 -115811530 - MER101 LTR ERV1 0 474 344 807 184 0 0 chrX 46788446 46788571 -115811359 - FRAM SINE Alu -48 128 4 1106 147 13 89 chrX 46788573 46788798 -115811132 - MER101 LTR ERV1 -133 341 134 2252 94 11 0 chrX 46788798 46789096 -115810834 + AluSx SINE Alu 3 303 0 1373 120 0 39 chrX 46789192 46789400 -115810530 + AluSg/x SINE Alu 97 296 -14 853 128 28 7 chrX 46789400 46789541 -115810389 - MER101 LTR ERV1 -330 144 1 1224 226 152 18 chrX 46789541 46789930 -115810000 - MLT1E2 LTR MaLR -167 459 19 273 252 75 0 chrX 46790329 46790436 -115809494 - L1MC4 LINE L1 0 8042 7928 280 258 108 8 chrX 46790617 46790737 -115809193 - L1ME3A LINE L1 -275 5895 5764 * 435 299 0 49 chrX 46790705 46790847 -115809083 - L1M1 LINE L1 -547 5604 5492 2434 88 3 0 chrX 46790847 46791154 -115808776 - AluSp SINE Alu -5 308 1 435 299 0 49 chrX 46791154 46791228 -115808702 - L1M1 LINE L1 -659 5492 5416 331 296 20 20 chrX 46791344 46791442 -115808488 - L1MEd LINE L1 -5920 199 102 741 233 108 85 chrX 46791494 46791850 -115808080 + L1MC4 LINE L1 7596 7965 -77 2045 104 9 57 chrX 46791850 46792167 -115807763 + AluSx SINE Alu 1 302 -10 741 233 108 85 chrX 46792167 46792247 -115807683 + L1MC4 LINE L1 7965 8042 0 1215 179 128 12 chrX 46792329 46792586 -115807344 - AluSg1 SINE Alu -22 287 1 1904 139 3 20 chrX 46792624 46792918 -115807012 - AluJo SINE Alu -23 289 1 471 307 93 20 chrX 46792989 46793443 -115806487 - MLT1J LTR MaLR 0 511 3 2171 101 0 7 chrX 46793878 46794174 -115805756 + AluSx SINE Alu 1 294 -18 2596 196 84 25 chrX 46794275 46794847 -115805083 - MLT1E2 LTR MaLR 0 626 21 442 207 73 73 chrX 46795349 46795528 -115804402 - L1MC5 LINE L1 -51 7910 7732 220 133 0 22 chrX 46795917 46795962 -115803968 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 8325 17 0 0 chrX 46795986 46797481 -115802449 + L1PA2 LINE L1 4657 6150 -5 797 269 21 21 chrX 46799055 46799293 -115800637 + Charlie8 DNA MER1_type 7 244 -2173 671 209 29 112 chrX 46799921 46800106 -115799824 - MER112 DNA MER1_type 0 256 100 369 0 0 0 chrX 46800106 46800147 -115799783 + (TG)n Simple_repeat Simple_repeat 2 42 0 671 209 29 112 chrX 46800147 46800239 -115799691 - MER112 DNA MER1_type -156 100 2 289 300 0 27 chrX 46800633 46800743 -115799187 + MLT1L LTR MaLR 1 107 -508 836 160 88 11 chrX 46800754 46800935 -115798995 - MER5C DNA MER1_type -125 199 5 1013 247 118 35 chrX 46800935 46801330 -115798600 + MLT1L LTR MaLR 144 466 -45 696 225 99 31 chrX 46801554 46801776 -115798154 - L1ME1 LINE L1 -25 6141 5905 2107 125 7 0 chrX 46801776 46802073 -115797857 + AluSx SINE Alu 1 299 -13 1401 78 0 6 chrX 46802073 46802252 -115797678 + AluSp SINE Alu 134 311 -2 469 124 124 0 chrX 46802257 46802346 -115797584 - L1M4 LINE L1 -1083 5063 4964 2478 214 73 25 chrX 46802347 46802914 -115797016 - L1M4 LINE L1 -1295 4851 4248 312 27 0 0 chrX 46802914 46802951 -115796979 + (TG)n Simple_repeat Simple_repeat 1 37 0 2478 214 73 25 chrX 46802951 46803024 -115796906 - L1M4 LINE L1 -1898 4248 4180 498 213 109 20 chrX 46803251 46803426 -115796504 - MIR SINE MIR -16 246 12 892 295 56 40 chrX 46803428 46804357 -115795573 + L1ME LINE L1 4801 5745 -376 201 151 132 38 chrX 46804482 46804535 -115795395 + MIR SINE MIR 93 150 -112 421 274 26 9 chrX 46804539 46804652 -115795278 - L2 LINE L2 -10 3262 3148 23 0 0 0 chrX 46804828 46804851 -115795079 + AT_rich Low_complexity Low_complexity 1 23 0 2193 109 0 28 chrX 46805196 46805516 -115794414 + AluSx SINE Alu 1 311 -1 598 163 0 11 chrX 46805565 46805657 -115794273 + FRAM SINE Alu 72 162 -14 519 309 102 37 chrX 46805760 46806162 -115793768 + L1MC4a LINE L1 2680 3107 -3039 1539 116 38 96 chrX 46806399 46806807 -115793123 + AluJo SINE Alu 7 397 0 649 257 72 116 chrX 46806812 46807042 -115792888 + L1MC4a LINE L1 5396 5635 -486 1840 119 7 70 chrX 46807042 46807344 -115792586 + AluJb SINE Alu 12 294 -18 649 257 72 116 chrX 46807344 46807715 -115792215 + L1MC4a LINE L1 5635 5906 -215 1815 123 11 18 chrX 46807877 46808154 -115791776 + AluJb SINE Alu 20 294 -18 214 229 33 0 chrX 46808626 46808687 -115791243 - MIR SINE MIR -10 252 190 208 193 70 0 chrX 46809078 46809135 -115790795 + (CTGGGG)n Simple_repeat Simple_repeat 2 62 0 1328 253 38 38 chrX 46809796 46810215 -115789715 - L1MC/D LINE L1 -2014 5794 5376 394 289 132 36 chrX 46810247 46810634 -115789296 + L1M4 LINE L1 4327 4750 -1396 294 176 88 33 chrX 46811003 46811094 -115788836 - L1MC/D LINE L1 -2338 5470 5375 284 218 184 0 chrX 46813463 46813550 -115786380 + MIR SINE MIR 84 186 -76 189 0 0 0 chrX 46813552 46813573 -115786357 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 2385 47 7 0 chrX 46814324 46814599 -115785331 - AluSc SINE Alu -12 297 21 370 203 120 15 chrX 46815975 46816108 -115783822 - L1MC5 LINE L1 -14 7947 7801 841 139 0 29 chrX 46816120 46816257 -115783673 - AluJb SINE Alu -179 133 1 1047 246 67 30 chrX 46816257 46816687 -115783243 - L1MC5 LINE L1 -144 7817 7372 238 247 78 0 chrX 46817702 46817779 -115782151 + L3 LINE CR1 1485 1567 -10 22 0 0 0 chrX 46818150 46818172 -115781758 + AT_rich Low_complexity Low_complexity 1 22 0 948 230 24 19 chrX 46818234 46818442 -115781488 + MIR SINE MIR 8 216 -46 841 147 35 7 chrX 46818442 46818585 -115781345 - MER5A DNA MER1_type 0 189 43 1745 185 90 85 chrX 46818586 46819197 -115780733 - L1MC5 LINE L1 -594 7367 6754 254 254 301 12 chrX 46819386 46819559 -115780371 + MIR SINE MIR 34 256 -6 273 296 167 9 chrX 46820125 46820233 -115779697 - L2 LINE L2 -5 3267 3143 214 287 53 21 chrX 46820717 46820811 -115779119 + MIR SINE MIR 126 222 -40 321 228 51 0 chrX 46820842 46820921 -115779009 + MIR SINE MIR 72 154 -108 202 203 169 17 chrX 46820920 46820979 -115778951 - L2 LINE L2 -4 3309 3242 * 244 128 43 21 chrX 46821449 46821496 -115778434 - L1ME4a LINE L1 -91 6030 5983 248 267 111 41 chrX 46821619 46821791 -115778139 + L1ME LINE L1 5400 5583 -538 1432 158 186 47 chrX 46822045 46822178 -115777752 + MER46B DNA MER2_type 1 114 -2617 737 159 0 0 chrX 46822178 46822285 -115777645 + L1PB4 LINE L1 6038 6144 -12 1432 158 186 47 chrX 46822285 46822468 -115777462 + MER46B DNA MER2_type 114 236 0 23 0 0 0 chrX 46822623 46822646 -115777284 + AT_rich Low_complexity Low_complexity 1 23 0 551 261 107 38 chrX 46823006 46823204 -115776726 - L1MC4 LINE L1 -9 8033 7803 2396 78 14 0 chrX 46823204 46823498 -115776432 + AluSx SINE Alu 1 298 -14 551 261 107 38 chrX 46823498 46823617 -115776313 - L1MC4 LINE L1 -239 7803 7694 302 171 132 0 chrX 46823702 46823778 -115776152 - L1ME4a LINE L1 -274 5847 5762 261 188 82 71 chrX 46823923 46823947 -115775983 - L1ME LINE L1 -274 5847 5825 2504 45 7 13 chrX 46823947 46824255 -115775675 - AluY SINE Alu -5 306 1 261 188 82 71 chrX 46824255 46824315 -115775615 - L1ME LINE L1 -296 5825 5762 1448 106 19 14 chrX 46824476 46824684 -115775246 - L1PB1 LINE L1 -1 6150 5942 225 237 0 0 chrX 46824897 46824956 -115774974 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 275 345 94 47 chrX 46825263 46825434 -115774496 - MIR3 SINE MIR -23 185 7 404 227 213 7 chrX 46827111 46827252 -115772678 - MIR SINE MIR -87 175 6 2384 97 0 0 chrX 46827304 46827602 -115772328 - AluSg SINE Alu -12 298 1 2170 144 39 8 chrX 46828096 46828451 -115771479 + MER47A DNA MER2_type 1 366 0 222 268 98 71 chrX 46828886 46828998 -115770932 - L2 LINE L2 -18 3254 3140 453 209 93 29 chrX 46829294 46829433 -115770497 - L1MC5 LINE L1 -54 7907 7760 241 265 42 89 chrX 46829480 46829622 -115770308 + MER5A DNA MER1_type 4 157 -32 730 60 0 180 chrX 46829753 46829903 -115770027 - AluJo SINE Alu -177 135 13 224 226 75 0 chrX 46830661 46830714 -115769216 + MIR SINE MIR 34 90 -172 1874 151 0 17 chrX 46831411 46831709 -115768221 + AluJb SINE Alu 1 293 -19 340 312 209 24 chrX 46832196 46832250 -115767680 + L2 LINE L2 1718 1761 -1553 2233 95 0 0 chrX 46832250 46832533 -115767397 - AluSq SINE Alu -30 283 1 340 312 209 24 chrX 46832533 46832818 -115767112 + L2 LINE L2 1761 2120 -1194 715 134 109 25 chrX 46832825 46832944 -115766986 - AluJb SINE Alu -182 130 2 328 341 104 0 chrX 46832945 46833109 -115766821 + L2 LINE L2 2095 2275 -1039 234 293 52 0 chrX 46833105 46833163 -115766767 - L2 LINE L2 -5 3308 3248 * 371 250 59 52 chrX 46833421 46833534 -115766396 - MIR SINE MIR -121 141 28 483 216 196 7 chrX 46833534 46833682 -115766248 - MER5A DNA MER1_type -1 188 13 2630 47 0 0 chrX 46834430 46834729 -115765201 + AluY SINE Alu 1 299 -12 328 273 133 8 chrX 46834733 46834861 -115765069 + MIR SINE MIR 6 149 -113 231 288 14 0 chrX 46835635 46835708 -115764222 + LTR67 LTR ERVL 441 514 -43 6949 171 48 19 chrX 46835889 46837701 -115762229 - L1MC1 LINE L1 0 6333 4575 2527 59 0 3 chrX 46837701 46838006 -115761924 - AluY SINE Alu -7 304 1 6949 171 48 19 chrX 46838006 46838236 -115761694 - L1MC1 LINE L1 -1758 4575 4353 1539 102 195 12 chrX 46838236 46838482 -115761448 - AluSg1 SINE Alu -18 291 1 6949 171 48 19 chrX 46838482 46838672 -115761258 - L1MC1 LINE L1 -1980 4353 3885 1531 199 108 42 chrX 46838676 46839203 -115760727 - L1M4 LINE L1 -1095 5051 4490 1474 97 18 26 chrX 46839206 46839381 -115760549 - AluY SINE Alu -5 306 132 2149 112 0 7 chrX 46839381 46839677 -115760253 - AluSc SINE Alu -12 297 4 1474 97 18 26 chrX 46839677 46839727 -115760203 - AluY SINE Alu -179 132 83 826 240 10 14 chrX 46839771 46839979 -115759951 - L1M4 LINE L1 -1894 4252 4046 265 304 93 37 chrX 46841010 46841280 -115758650 - L1ME4a LINE L1 -207 5914 5630 22 0 0 0 chrX 46841749 46841771 -115758159 + AT_rich Low_complexity Low_complexity 1 22 0 289 241 342 0 chrX 46842338 46842496 -115757434 + MIR SINE MIR 21 232 -30 1436 142 9 0 chrX 46842603 46842822 -115757108 - AluJb SINE Alu -5 307 87 976 165 13 43 chrX 46843602 46843832 -115756098 - L1M3 LINE L1 -692 5476 5254 1127 189 28 12 chrX 46843834 46844082 -115755848 + L1MB1 LINE L1 5856 6107 -82 912 206 144 23 chrX 46844087 46844393 -115755537 - MER2 DNA MER2_type -1 344 2 1051 141 9 59 chrX 46844395 46844615 -115755315 + L1MA10 LINE L1 6111 6319 -15 302 200 0 0 chrX 46844909 46844974 -115754956 - L1ME4a LINE L1 -463 5658 5594 2126 295 43 38 chrX 46845266 46846133 -115753797 + ERVL LTR ERVL 2753 3623 -2141 182 265 48 60 chrX 46846329 46846412 -115753518 - MIR SINE MIR -74 188 107 322 338 76 13 chrX 46846537 46846694 -115753236 - MIR SINE MIR -94 168 2 233 49 73 0 chrX 46847208 46847249 -115752681 + T-rich Low_complexity Low_complexity 2 45 0 1961 141 7 0 chrX 46849317 46849601 -115750329 + AluJo SINE Alu 1 286 -26 285 29 0 0 chrX 46849994 46850028 -115749902 + (TA)n Simple_repeat Simple_repeat 2 35 0 1154 44 0 0 chrX 46850028 46850165 -115749765 - AluY SINE Alu -5 306 170 1841 167 0 23 chrX 46851641 46851947 -115747983 + AluJb SINE Alu 1 299 -13 2231 113 0 7 chrX 46852114 46852415 -115747515 + AluSq SINE Alu 1 299 -14 365 283 127 9 chrX 46852960 46853172 -115746758 + L1ME LINE L1 5322 5558 -604 327 301 40 22 chrX 46853236 46853420 -115746510 + L1MA1 LINE L1 5700 5885 -285 583 136 291 41 chrX 46853585 46853835 -115746095 + Tigger7 DNA MER2_type 1 2477 -10 1979 145 0 3 chrX 46855378 46855681 -115744249 - AluJb SINE Alu -2 310 9 242 309 49 24 chrX 46855840 46855963 -115743967 + MIR SINE MIR 123 248 -14 333 176 40 0 chrX 46856289 46856363 -115743567 - L1MC/D LINE L1 -1992 5816 5740 327 192 120 0 chrX 46856477 46856602 -115743328 - L1ME4a LINE L1 -719 5443 5304 588 180 112 112 chrX 46856979 46857157 -115742773 - MER5A DNA MER1_type -11 178 1 1650 71 0 5 chrX 46857401 46857612 -115742318 - AluY SINE Alu -5 306 97 22 35 0 0 chrX 46857766 46857795 -115742135 + AT_rich Low_complexity Low_complexity 1 29 0 500 325 119 17 chrX 46858420 46858841 -115741089 + L1M4 LINE L1 4673 5136 -1010 274 241 0 13 chrX 46858944 46859023 -115740907 - L1MC/D LINE L1 -377 5744 5667 1915 107 7 21 chrX 46859049 46859330 -115740600 - AluSx SINE Alu -35 277 1 420 256 58 7 chrX 46859392 46859529 -115740401 - L1M4 LINE L1 -6393 149 6 786 223 67 10 chrX 46859596 46859789 -115740141 + MER105 DNA DNA 1 204 0 195 42 0 0 chrX 46859846 46859870 -115740060 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1552 158 18 32 chrX 46860148 46860433 -115739497 + AluJo SINE Alu 1 281 -31 82 48 0 0 chrX 46860463 46860587 -115739343 + AT_rich Low_complexity Low_complexity 1 124 0 38 75 0 0 chrX 46860698 46860778 -115739152 + AT_rich Low_complexity Low_complexity 1 80 0 332 161 22 0 chrX 46861374 46861441 -115738489 - Alu SINE Alu -20 282 236 276 174 71 82 chrX 46864463 46864561 -115735369 + MIR SINE MIR 87 183 -79 223 277 161 19 chrX 46865281 46865436 -115734494 + MIR SINE MIR 57 233 -29 256 320 104 32 chrX 46865491 46865616 -115734314 + L2 LINE L2 3139 3272 0 1635 141 104 18 chrX 46866263 46866589 -115733341 - MER46B DNA MER2_type 0 236 8 22 0 0 0 chrX 46867283 46867305 -115732625 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 46868193 46868217 -115731713 + AT_rich Low_complexity Low_complexity 1 24 0 254 228 130 22 chrX 46868624 46868716 -115731214 + L2 LINE L2 3156 3257 -56 1061 178 0 6 chrX 46868848 46869028 -115730902 + AluJb SINE Alu 50 228 -84 324 0 0 0 chrX 46869510 46869546 -115730384 + (CA)n Simple_repeat Simple_repeat 2 37 0 504 232 0 0 chrX 46869839 46869964 -115729966 + (CCCCAG)n Simple_repeat Simple_repeat 6 130 0 192 77 0 0 chrX 46871225 46871251 -115728679 + (CTTA)n Simple_repeat Simple_repeat 1 26 0 1367 107 0 0 chrX 46871251 46871428 -115728502 - AluSg/x SINE Alu -21 291 115 882 117 0 0 chrX 46871472 46871592 -115728338 + AluSq/x SINE Alu 1 120 -193 784 240 87 28 chrX 46871962 46872283 -115727647 - L1M4 LINE L1 -1824 4322 3983 1704 157 58 24 chrX 46875211 46875504 -115724426 + AluJb SINE Alu 1 303 -9 186 43 0 0 chrX 46876144 46876167 -115723763 + (T)n Simple_repeat Simple_repeat 1 23 0 2265 100 10 3 chrX 46876895 46877194 -115722736 + AluSx SINE Alu 4 304 -8 329 286 124 23 chrX 46877358 46877624 -115722306 - L1M4 LINE L1 -2748 3398 3106 1137 176 142 4 chrX 46879553 46879786 -115720144 + AluJb SINE Alu 1 265 -47 1806 122 0 0 chrX 46880230 46880476 -115719454 + AluSx SINE Alu 3 248 -64 321 355 98 11 chrX 46880750 46880953 -115718977 + MIR SINE MIR 30 258 -4 327 306 25 50 chrX 46881246 46881367 -115718563 + MIR3 SINE MIR 78 195 -13 2164 140 0 7 chrX 46881466 46881773 -115718157 - AluSq SINE Alu -8 305 1 315 0 0 0 chrX 46882262 46882297 -115717633 + (GA)n Simple_repeat Simple_repeat 1 35 0 234 0 0 0 chrX 46882296 46882322 -115717608 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 189 0 0 0 chrX 46885076 46885097 -115714833 + (A)n Simple_repeat Simple_repeat 1 21 0 2184 107 7 0 chrX 46885789 46886080 -115713850 + AluSx SINE Alu 5 297 -15 628 160 0 0 chrX 46886095 46886189 -115713741 + AluJ/FLAM SINE Alu 3 96 -216 272 146 0 0 chrX 46886190 46886231 -115713699 + AluSp SINE Alu 132 172 -131 231 256 190 36 chrX 46887224 46887419 -115712511 - L2 LINE L2 -388 2926 2702 28 0 0 0 chrX 46888076 46888104 -115711826 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrX 46888879 46888903 -115711027 + AT_rich Low_complexity Low_complexity 1 24 0 268 317 43 43 chrX 46889202 46889363 -115710567 - L2 LINE L2 -163 3109 2949 1633 89 0 193 chrX 46889410 46889768 -115710162 + AluSc SINE Alu 3 291 -8 246 313 30 0 chrX 46889904 46890003 -115709927 + L1 LINE L1 3717 3818 -2328 1550 153 42 21 chrX 46890285 46890572 -115709358 + AluJo SINE Alu 1 293 -19 279 191 19 19 chrX 46890648 46890736 -115709194 + L1ME LINE L1 5767 5854 -316 937 154 6 25 chrX 46890747 46890909 -115709021 + AluJb SINE Alu 137 295 -17 1807 161 0 3 chrX 46891108 46891412 -115708518 - AluSx SINE Alu -9 303 1 1883 138 0 25 chrX 46891412 46891730 -115708200 - AluJb SINE Alu 0 312 3 22 0 0 0 chrX 46891853 46891875 -115708055 + AT_rich Low_complexity Low_complexity 1 22 0 1361 147 34 29 chrX 46891913 46892188 -115707742 + LTR54 LTR ERV1 1 301 -197 472 202 32 0 chrX 46892188 46892282 -115707648 - Tigger2 DNA MER2_type -10 2708 2612 869 141 0 7 chrX 46892282 46892417 -115707513 + AluJo SINE Alu 1 134 -178 1881 142 3 7 chrX 46892429 46892725 -115707205 + AluJb SINE Alu 1 295 -17 370 88 0 18 chrX 46892727 46892784 -115707146 - Tigger2 DNA MER2_type -87 2631 2576 1812 119 86 47 chrX 46892784 46893145 -115706785 - THE1C LTR MaLR 0 375 1 10224 113 9 54 chrX 46893145 46893882 -115706048 - THE1C-int LTR MaLR 0 1580 812 2059 137 0 3 chrX 46893882 46894182 -115705748 - AluSx SINE Alu -13 299 1 10224 113 9 54 chrX 46894182 46895096 -115704834 - THE1C-int LTR MaLR -768 812 3 1706 123 35 60 chrX 46895100 46895416 -115704514 - THE1C LTR MaLR -2 373 66 * 9835 109 40 13 chrX 46895415 46896815 -115703115 - Tigger2 DNA MER2_type -137 2581 1137 1878 147 10 3 chrX 46896815 46897122 -115702808 - AluJo SINE Alu -3 309 1 9835 109 40 13 chrX 46897122 46897203 -115702727 - Tigger2 DNA MER2_type -1581 1137 1060 637 178 0 59 chrX 46897219 46897354 -115702576 - FLAM_A SINE Alu -2 140 14 648 183 0 0 chrX 46897393 46897508 -115702422 - AluJ SINE Alu 0 312 198 918 111 0 15 chrX 46897513 46897648 -115702282 - AluJ SINE Alu -179 133 1 5093 111 56 89 chrX 46897648 46898465 -115701465 - Tigger2 DNA MER2_type -1660 1058 276 1958 140 7 10 chrX 46898465 46898773 -115701157 - AluJo SINE Alu -5 307 1 5093 111 56 89 chrX 46898773 46898923 -115701007 - Tigger2 DNA MER2_type -2442 276 123 4070 120 57 15 chrX 46898932 46899582 -115700348 + MER50 LTR ERV1 4 680 -54 1875 169 109 45 chrX 46899582 46900062 -115699868 - LTR10A LTR ERV1 0 548 1 961 108 0 0 chrX 46900099 46900238 -115699692 - AluY SINE Alu -8 303 165 1929 176 79 41 chrX 46900238 46900680 -115699250 - LTR2B LTR ERV1 0 490 32 54963 49 17 14 chrX 46900699 46901226 -115698704 - Harlequin LTR ERV1 0 6896 6372 2458 62 7 0 chrX 46901226 46901531 -115698399 - AluY SINE Alu -4 307 1 54963 49 17 14 chrX 46901531 46907868 -115692062 - Harlequin LTR ERV1 -524 6372 9 2056 190 84 26 chrX 46907876 46908339 -115691591 - LTR2B LTR ERV1 0 490 1 259 119 0 4 chrX 46908339 46908375 -115691555 - AluY SINE Alu -140 161 133 764 140 15 37 chrX 46908375 46908511 -115691419 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chrX 46908513 46908534 -115691396 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1754 130 36 18 chrX 46908535 46908811 -115691119 - AluSx SINE Alu -31 281 1 567 207 0 0 chrX 46908816 46908927 -115691003 - Tigger2 DNA MER2_type -2606 112 2 1209 179 53 8 chrX 46908929 46909175 -115690755 + LTR54 LTR ERV1 254 510 0 2377 117 109 112 chrX 46909259 46909383 -115690547 - LTR49 LTR ERV1 0 595 472 1672 140 82 55 chrX 46909383 46909676 -115690254 + THE1C LTR MaLR 1 307 -68 2060 129 6 0 chrX 46909676 46909987 -115689943 + AluSq SINE Alu 1 313 0 1672 140 82 55 chrX 46909987 46910058 -115689872 + THE1C LTR MaLR 307 375 0 2377 117 109 112 chrX 46910058 46910233 -115689697 - LTR49 LTR ERV1 -123 472 298 2183 121 0 6 chrX 46910233 46910548 -115689382 + AluSq SINE Alu 1 313 0 2377 117 109 112 chrX 46910548 46910844 -115689086 - LTR49 LTR ERV1 -297 298 1 642 218 18 41 chrX 46910844 46911014 -115688916 - LTR49-int LTR ERV1 0 6331 6166 23 33 0 0 chrX 46911014 46911044 -115688886 + AT_rich Low_complexity Low_complexity 1 30 0 825 127 0 8 chrX 46911044 46911170 -115688760 - FLAM_C SINE Alu -18 125 1 1449 111 7 98 chrX 46911171 46911219 -115688711 - LTR49-int LTR ERV1 -155 6176 6125 225 0 0 0 chrX 46911219 46911244 -115688686 + (TTGG)n Simple_repeat Simple_repeat 1 25 0 1874 138 0 11 chrX 46911251 46911534 -115688396 - AluJo SINE Alu -32 280 1 1449 111 7 98 chrX 46911534 46911638 -115688292 - LTR49-int LTR ERV1 -212 6119 6053 2246 92 0 7 chrX 46911638 46911944 -115687986 - AluSq SINE Alu -9 304 1 1449 111 7 98 chrX 46911944 46912079 -115687851 - LTR49-int LTR ERV1 -278 6053 5907 1814 92 69 0 chrX 46912195 46912456 -115687474 + LTR29 LTR ERV1 2 280 -342 1600 158 13 48 chrX 46912462 46912518 -115687412 + AluJb SINE Alu 7 63 -249 2517 47 0 0 chrX 46912518 46912819 -115687111 - AluY SINE Alu -9 302 2 1600 158 13 48 chrX 46912819 46913073 -115686857 + AluJb SINE Alu 63 306 -6 470 17 17 0 chrX 46913109 46913168 -115686762 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 2492 106 11 17 chrX 46913175 46913533 -115686397 + LTR29 LTR ERV1 267 622 0 541 225 13 40 chrX 46913533 46913684 -115686246 - LOR1-int LTR ERV1 -483 4453 4307 * 3163 109 17 126 chrX 46913664 46913841 -115686089 - LOR1-int LTR ERV1 -518 6079 5884 1939 156 0 0 chrX 46913841 46914148 -115685782 - AluSx SINE Alu -5 307 1 2028 132 0 0 chrX 46914150 46914453 -115685477 - AluSx SINE Alu -5 307 5 3163 109 17 126 chrX 46914453 46914529 -115685401 - LOR1-int LTR ERV1 -714 5883 5800 2137 117 0 16 chrX 46914529 46914845 -115685085 - AluSx SINE Alu 0 312 2 3163 109 17 126 chrX 46914845 46915178 -115684752 - LOR1-int LTR ERV1 -797 5800 5432 216 0 0 0 chrX 46915178 46915202 -115684728 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2187 89 20 7 chrX 46915202 46915506 -115684424 + AluY SINE Alu 1 308 -3 2176 85 24 3 chrX 46915508 46915801 -115684129 + AluSq SINE Alu 1 299 -14 3163 109 17 126 chrX 46915801 46915915 -115684015 - LOR1-int LTR ERV1 -1165 5432 5307 6608 61 6 38 chrX 46915915 46917623 -115682307 - SVA Other Other -683 1383 5 3163 109 17 126 chrX 46917623 46917668 -115682262 - LOR1-int LTR ERV1 -1290 5307 4985 3536 125 15 32 chrX 46917669 46918255 -115681675 + MER41B LTR ERV1 3 578 -57 237 75 0 0 chrX 46918246 46918286 -115681644 - AluY SINE Alu 0 308 269 * 539 152 0 33 chrX 46918277 46918289 -115681641 + MER41A LTR ERV1 466 477 -77 1597 71 0 0 chrX 46918289 46918487 -115681443 - AluY SINE Alu -113 198 1 539 152 0 33 chrX 46918487 46918566 -115681364 + MER41A LTR ERV1 477 554 0 2742 171 31 53 chrX 46918566 46918788 -115681142 - LOR1-int LTR ERV1 -1342 4989 4764 2196 100 0 3 chrX 46918788 46919087 -115680843 + AluSq SINE Alu 1 298 -15 1785 62 9 0 chrX 46919088 46919314 -115680616 + AluY SINE Alu 66 293 -18 2742 171 31 53 chrX 46919314 46919801 -115680129 - LOR1-int LTR ERV1 -1566 4765 4294 510 168 105 63 chrX 46919790 46919933 -115679997 - LOR1-int LTR ERV1 -2355 3976 3828 * 1669 139 31 54 chrX 46919933 46920099 -115679831 - AluJb SINE Alu -2 310 153 2171 102 3 0 chrX 46920099 46920392 -115679538 - AluSx SINE Alu -18 294 1 1669 139 31 54 chrX 46920392 46920542 -115679388 - AluJb SINE Alu -159 153 1 738 82 0 0 chrX 46920542 46920639 -115679291 - AluSg/x SINE Alu -8 301 205 234 260 14 0 chrX 46920868 46920941 -115678989 + MER94 DNA DNA 5 78 -56 1632 125 68 32 chrX 46920942 46921222 -115678708 + AluJo SINE Alu 1 290 -22 1945 94 40 4 chrX 46921231 46921508 -115678422 + AluSc SINE Alu 1 287 -22 306 246 0 0 chrX 46921586 46921647 -115678283 + Tigger5 DNA MER2_type 2263 2323 0 1795 179 0 10 chrX 46921647 46921954 -115677976 + MER90 LTR ERV1 272 575 0 731 99 59 0 chrX 46921974 46922075 -115677855 + AluSg/x SINE Alu 151 257 -53 2012 126 0 0 chrX 46922081 46922374 -115677556 - AluJb SINE Alu -19 293 1 1804 146 56 12 chrX 46922375 46922696 -115677234 - LTR26 LTR ERV1 -268 335 1 2300 103 0 0 chrX 46922991 46923302 -115676628 - AluSq SINE Alu -2 311 1 1867 115 7 0 chrX 46923302 46923581 -115676349 - AluSx SINE Alu -23 289 9 1166 164 18 49 chrX 46923655 46923880 -115676050 - MER49 LTR ERV1 -705 218 1 1572 182 7 15 chrX 46923883 46924152 -115675778 - LOR1-int LTR ERV1 -1023 7097 6831 1881 125 7 23 chrX 46924152 46924455 -115675475 + AluJb SINE Alu 1 298 -14 1218 173 31 35 chrX 46924552 46924778 -115675152 - LOR1-int LTR ERV1 -595 6163 5939 412 125 0 0 chrX 46924763 46924827 -115675103 - LOR1-int LTR ERV1 -4136 3984 3921 * 1908 203 30 136 chrX 46924895 46925190 -115674740 - L1M4 LINE L1 -2060 4086 3761 1783 155 0 3 chrX 46925190 46925480 -115674450 - AluJb SINE Alu -22 290 2 1908 203 30 136 chrX 46925480 46925554 -115674376 - L1M4 LINE L1 -2385 3761 3681 2256 93 0 3 chrX 46925554 46925854 -115674076 - AluSq SINE Alu -14 299 1 1908 203 30 136 chrX 46925854 46926037 -115673893 - L1M4 LINE L1 -2465 3681 3480 2250 192 119 23 chrX 46926037 46926606 -115673324 + MLT1E3 LTR MaLR 1 624 0 1908 203 30 136 chrX 46926606 46926699 -115673231 - L1M4 LINE L1 -2666 3480 3538 1640 121 3 140 chrX 46926699 46926912 -115673018 - AluJo SINE Alu -5 307 161 2120 101 0 29 chrX 46926912 46927220 -115672710 - AluSg SINE Alu -11 299 1 1640 121 3 140 chrX 46927220 46927362 -115672568 - AluJo SINE Alu -151 161 1 1908 203 30 136 chrX 46927362 46927522 -115672408 - L1M4 LINE L1 -2607 3539 3364 1474 97 0 0 chrX 46927537 46927733 -115672197 - AluSq SINE Alu -116 197 2 738 189 57 94 chrX 46927734 46927861 -115672069 - L1M4 LINE L1 -3003 3143 3030 1909 142 0 3 chrX 46927861 46928150 -115671780 + AluJo SINE Alu 1 288 -24 738 189 57 94 chrX 46928150 46928287 -115671643 - L1M4 LINE L1 -3116 3030 2889 2185 201 96 41 chrX 46928289 46928949 -115670981 + LTR41 LTR ERVL 1 696 -77 1956 144 3 6 chrX 46929008 46929321 -115670609 - AluJb SINE Alu 0 312 1 329 195 13 26 chrX 46929326 46929403 -115670527 + LTR41 LTR ERVL 698 773 0 2432 71 0 0 chrX 46929721 46930029 -115669901 + AluY SINE Alu 1 308 -3 1933 119 7 0 chrX 46930033 46930348 -115669582 + AluSg1 SINE Alu 1 317 0 4799 287 54 47 chrX 46930640 46931615 -115668315 + ERVL LTR ERVL 775 1742 -4022 2389 61 0 0 chrX 46931615 46931911 -115668019 - AluY SINE Alu -14 297 2 4799 287 54 47 chrX 46931911 46931936 -115667994 + ERVL LTR ERVL 1742 1765 -3999 800 141 0 63 chrX 46931936 46932078 -115667852 - FLAM_C SINE Alu 0 133 1 4799 287 54 47 chrX 46932078 46932466 -115667464 + ERVL LTR ERVL 1765 2149 -3615 1777 140 0 11 chrX 46932466 46932745 -115667185 + AluJo SINE Alu 5 280 -32 4799 287 54 47 chrX 46932745 46933400 -115666530 + ERVL LTR ERVL 2149 2834 -2930 2031 131 13 0 chrX 46933412 46933717 -115666213 + AluSx SINE Alu 4 312 0 1730 157 11 14 chrX 46933727 46933861 -115666069 + AluJb SINE Alu 1 134 -178 2312 69 0 7 chrX 46933861 46934172 -115665758 + AluY SINE Alu 1 311 0 1730 157 11 14 chrX 46934172 46934323 -115665607 + AluJb SINE Alu 134 285 -27 996 9 0 0 chrX 46934323 46934436 -115665494 + (TA)n Simple_repeat Simple_repeat 1 113 0 1768 158 0 48 chrX 46934436 46934752 -115665178 + MLT2D LTR ERVL 114 414 0 5891 268 43 20 chrX 46934759 46934935 -115664995 + ERVL LTR ERVL 2820 2990 -2774 1818 151 0 23 chrX 46934935 46935240 -115664690 - AluJb SINE Alu -14 298 1 5891 268 43 20 chrX 46935240 46935270 -115664660 + ERVL LTR ERVL 2990 3018 -2746 2253 92 3 0 chrX 46935270 46935565 -115664365 - AluSx SINE Alu -16 296 1 5891 268 43 20 chrX 46935565 46937576 -115662354 + ERVL LTR ERVL 3018 5157 -607 186 43 0 0 chrX 46937589 46937612 -115662318 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2044 111 31 0 chrX 46937614 46937903 -115662027 - AluSx SINE Alu -14 298 1 831 253 86 27 chrX 46937943 46938244 -115661686 + ERVL LTR ERVL 5178 5496 -268 707 179 0 0 chrX 46938431 46938543 -115661387 - FRAM SINE Alu -17 159 48 1491 196 25 148 chrX 46938613 46939173 -115660757 + LTR41 LTR ERVL 1 491 -282 1061 112 0 65 chrX 46939304 46939474 -115660456 - FRAM SINE Alu -18 158 1 794 186 41 29 chrX 46939475 46939661 -115660269 - L1MEc LINE L1 -5424 972 781 4799 137 28 27 chrX 46939661 46940445 -115659485 - LTR1 LTR ERV1 0 785 1 794 186 41 29 chrX 46940445 46940500 -115659430 - L1MEc LINE L1 -5615 781 728 982 125 30 71 chrX 46940501 46940669 -115659261 + AluSg/x SINE Alu 132 292 -18 613 232 76 76 chrX 46940693 46940728 -115659202 - L1MEc LINE L1 -5693 703 669 2137 136 3 22 chrX 46940728 46941045 -115658885 - AluJb SINE Alu -1 311 1 613 232 76 76 chrX 46941045 46941246 -115658684 - L1MEc LINE L1 -5726 670 467 4024 95 14 35 chrX 46941247 46941793 -115658137 + MER51A LTR ERV1 2 549 -108 2406 107 0 0 chrX 46941793 46942101 -115657829 - AluSg SINE Alu -2 308 1 4024 95 14 35 chrX 46942101 46942192 -115657738 + MER51A LTR ERV1 549 640 -17 239 89 200 0 chrX 46942203 46942248 -115657682 + MER51A LTR ERV1 581 634 0 1334 228 40 68 chrX 46942254 46942698 -115657232 - L1MEc LINE L1 -5931 465 34 1208 209 54 179 chrX 46942715 46943176 -115656754 + L2 LINE L2 241 758 -2556 909 130 0 36 chrX 46943176 46943314 -115656616 + FLAM_C SINE Alu 1 133 0 366 98 0 0 chrX 46943319 46943370 -115656560 + MER66B LTR ERV1 295 345 -141 1208 209 54 179 chrX 46943370 46943416 -115656514 + L2 LINE L2 762 812 -2502 2039 145 0 0 chrX 46943416 46943705 -115656225 + AluSx SINE Alu 4 292 -20 1208 209 54 179 chrX 46943705 46943899 -115656031 + L2 LINE L2 812 904 -2410 2165 182 12 103 chrX 46943901 46944473 -115655457 - MLT2B1 LTR ERVL 0 520 1 4140 108 95 123 chrX 46944473 46944734 -115655196 - ERVL-B1 LTR ERVL -7 5757 5490 504 143 0 0 chrX 46944734 46944804 -115655126 + AluS SINE Alu 2 71 -241 1671 83 13 40 chrX 46944804 46945032 -115654898 - AluSq SINE Alu -91 222 1 4140 108 95 123 chrX 46945032 46945458 -115654472 - ERVL-B1 LTR ERVL -273 5491 5028 2359 119 0 0 chrX 46945458 46945770 -115654160 + AluSx SINE Alu 1 312 0 4140 108 95 123 chrX 46945770 46945937 -115653993 - ERVL-B1 LTR ERVL -736 5028 4858 245 174 0 0 chrX 46945937 46945983 -115653947 - MLT2B2 LTR ERVL -469 46 1 669 253 109 0 chrX 46945985 46946159 -115653771 + L2 LINE L2 927 1119 -2195 1499 171 12 4 chrX 46946172 46946305 -115653625 - AluJo SINE Alu -58 254 117 191 35 0 35 chrX 46946305 46946334 -115653596 + (TA)n Simple_repeat Simple_repeat 2 29 0 1499 171 12 4 chrX 46946334 46946452 -115653478 - AluJo SINE Alu -195 117 1 275 119 0 17 chrX 46946888 46946947 -115652983 + (TG)n Simple_repeat Simple_repeat 2 59 0 330 26 0 0 chrX 46946947 46946986 -115652944 + (GA)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chrX 46947077 46947097 -115652833 + (GA)n Simple_repeat Simple_repeat 2 21 0 212 122 24 0 chrX 46947258 46947299 -115652631 + GA-rich Low_complexity Low_complexity 4 45 0 779 264 171 26 chrX 46947651 46948003 -115651927 + L2 LINE L2 2910 3312 -1 478 139 10 40 chrX 46948427 46948528 -115651402 - L1MC4a LINE L1 -1773 6035 5938 594 0 0 0 chrX 46948548 46948614 -115651316 + (TTCTC)n Simple_repeat Simple_repeat 4 69 0 1781 146 7 14 chrX 46948616 46948897 -115651033 - AluJo SINE Alu -33 279 1 2000 89 0 4 chrX 46948949 46949206 -115650724 - AluSg SINE Alu -1 309 54 2106 160 7 10 chrX 46949634 46950193 -115649737 + L1MB5 LINE L1 5055 5611 -563 2506 73 0 0 chrX 46950193 46950495 -115649435 + AluY SINE Alu 1 302 -9 1724 205 39 39 chrX 46950504 46950913 -115649017 - LTR2 LTR ERV1 0 449 41 914 141 31 0 chrX 46951000 46951163 -115648767 + L1MB5 LINE L1 5616 5783 -391 1309 89 5 0 chrX 46951163 46951353 -115648577 - MER46B DNA MER2_type 0 236 46 1813 152 0 0 chrX 46951382 46951645 -115648285 - AluJb SINE Alu -20 292 30 2228 106 27 0 chrX 46951645 46951935 -115647995 + AluSx SINE Alu 1 300 -12 554 146 285 0 chrX 46951975 46952119 -115647811 - MER46B DNA MER2_type -176 60 1 260 158 35 18 chrX 46952075 46952132 -115647798 + MER46A DNA MER2_type 101 158 -78 * 1159 192 99 71 chrX 46952132 46952226 -115647704 + L1MB5 LINE L1 5795 5885 -289 2179 132 0 3 chrX 46952226 46952522 -115647408 + AluSx SINE Alu 1 295 -17 1159 192 99 71 chrX 46952522 46952791 -115647139 + L1MB5 LINE L1 5885 6168 -6 664 177 0 0 chrX 46953038 46953151 -115646779 + MER3 DNA MER1_type 1 113 -96 2306 100 0 10 chrX 46953151 46953460 -115646470 + AluSq SINE Alu 1 306 -7 1204 138 0 11 chrX 46953461 46953642 -115646288 + AluSg/x SINE Alu 120 298 -14 2289 110 0 7 chrX 46953644 46953953 -115645977 - AluSc SINE Alu -2 307 1 1374 143 86 9 chrX 46953955 46954234 -115645696 - L1MB3 LINE L1 -83 6100 5813 1757 152 48 0 chrX 46954240 46954509 -115645421 - AluJo SINE Alu -30 282 1 441 88 0 29 chrX 46954510 46954578 -115645352 + MER3 DNA MER1_type 144 209 0 305 161 16 32 chrX 46954523 46954585 -115645345 - MER3 DNA MER1_type -108 101 41 * 2449 93 0 0 chrX 46954776 46955088 -115644842 + AluSx SINE Alu 1 312 0 966 126 61 3 chrX 46955301 46955531 -115644399 - AluJb SINE Alu -10 302 2 1041 172 0 0 chrX 46955536 46955693 -115644237 - FRAM SINE Alu -23 153 1 478 275 0 28 chrX 46955768 46955910 -115644020 - L2 LINE L2 0 3313 3176 980 180 0 50 chrX 46955913 46956113 -115643817 + AluJo SINE Alu 118 307 -5 1787 156 46 3 chrX 46956118 46956401 -115643529 + AluSx SINE Alu 1 295 -17 2324 103 6 16 chrX 46956403 46956715 -115643215 + AluSx SINE Alu 1 309 -3 2116 143 0 10 chrX 46956943 46957257 -115642673 + AluJb SINE Alu 1 311 -1 236 170 19 0 chrX 46957257 46957310 -115642620 + GA-rich Low_complexity Low_complexity 1 54 0 1151 102 6 0 chrX 46957317 46957494 -115642436 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2412 99 0 0 chrX 46957849 46958161 -115641769 + AluSx SINE Alu 1 312 0 798 92 15 8 chrX 46958161 46958292 -115641638 + (GGAA)n Simple_repeat Simple_repeat 2 133 0 449 136 49 0 chrX 46958533 46958614 -115641316 - LTR61 LTR ERV1 0 595 511 * 707 93 37 0 chrX 46958607 46958714 -115641216 + LTR61 LTR ERV1 485 595 0 1694 76 80 80 chrX 46958843 46959157 -115640773 - LTR61 LTR ERV1 -281 314 1 533 105 59 171 chrX 46959480 46959536 -115640394 + MER65B LTR ERV1 1 62 -469 244 0 56 0 chrX 46959536 46959572 -115640358 + (CAA)n Simple_repeat Simple_repeat 2 39 0 533 105 59 171 chrX 46959572 46959583 -115640347 + MER65B LTR ERV1 62 73 -458 2321 84 0 3 chrX 46959583 46959896 -115640034 + AluSq SINE Alu 1 312 0 533 105 59 171 chrX 46959896 46959978 -115639952 + MER65B LTR ERV1 73 135 -396 1036 217 5 9 chrX 46959993 46960210 -115639720 + AluJo SINE Alu 5 220 -92 241 75 0 113 chrX 46960212 46960265 -115639665 + Alu SINE Alu 87 133 0 881 176 26 7 chrX 46960267 46960420 -115639510 - FRAM SINE Alu -23 153 1 1790 118 44 34 chrX 46960434 46960710 -115639220 + MER65A LTR ERV1 121 402 -43 2496 80 3 0 chrX 46960710 46961012 -115638918 - AluSg SINE Alu -7 303 1 1790 118 44 34 chrX 46961012 46961056 -115638874 + MER65A LTR ERV1 402 444 -1 894 127 0 0 chrX 46961352 46961470 -115638460 + FLAM_C SINE Alu 1 118 -25 216 0 0 0 chrX 46961472 46961496 -115638434 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2093 114 40 0 chrX 46961504 46961802 -115638128 + AluSx SINE Alu 1 310 -2 590 303 20 47 chrX 46961811 46962174 -115637756 - L1MCb LINE L1 -5720 325 89 1112 155 0 0 chrX 46962248 46962409 -115637521 - FRAM SINE Alu -16 160 1 2324 92 10 7 chrX 46963162 46963466 -115636464 - AluSx SINE Alu -7 305 1 1999 118 53 0 chrX 46963561 46963884 -115636046 + L1PA16 LINE L1 5637 5976 -190 2543 81 3 0 chrX 46964880 46965189 -115634741 + AluSp SINE Alu 1 310 -3 2281 88 40 0 chrX 46965189 46965485 -115634445 + AluSc SINE Alu 1 308 -1 350 135 0 0 chrX 46965842 46965894 -115634036 - MER66B LTR ERV1 -140 346 295 1369 94 0 0 chrX 46965905 46966118 -115633812 - AluSg/x SINE Alu 0 338 126 1222 172 5 0 chrX 46966217 46966420 -115633510 + L1PA16 LINE L1 5959 6162 -4 1959 148 24 0 chrX 46966440 46966730 -115633200 - AluJb SINE Alu -15 297 1 851 157 5 90 chrX 46966752 46966904 -115633026 + L1PA16 LINE L1 5889 5978 -178 2244 119 3 0 chrX 46966904 46967215 -115632715 + AluSx SINE Alu 1 312 0 851 157 5 90 chrX 46967215 46967374 -115632556 + L1PA16 LINE L1 5978 6149 -7 2444 65 3 0 chrX 46967375 46967667 -115632263 - AluY SINE Alu -17 294 2 1194 192 156 42 chrX 46967695 46968054 -115631876 + L1MC4a LINE L1 5521 5920 -1888 845 135 8 0 chrX 46968071 46968197 -115631733 + AluSg/x SINE Alu 182 308 -4 433 229 257 7 chrX 46968346 46968490 -115631440 + MIR SINE MIR 67 246 -16 1803 162 17 7 chrX 46968490 46968780 -115631150 + AluJb SINE Alu 1 293 -19 474 230 0 44 chrX 46968866 46968979 -115630951 + MER5B DNA MER1_type 3 110 -68 896 139 0 15 chrX 46969026 46969163 -115630767 - AluJo SINE Alu -177 135 1 2326 122 0 0 chrX 46969227 46969530 -115630400 + AluSx SINE Alu 1 303 -9 2441 45 10 7 chrX 46969556 46969847 -115630083 + AluY SINE Alu 1 292 -19 372 275 16 88 chrX 46969882 46970075 -115629855 + L2 LINE L2 2881 3059 -213 649 270 75 86 chrX 46970198 46970557 -115629373 + L2 LINE L2 2910 3264 -8 238 319 87 51 chrX 46970625 46970763 -115629167 - L3 LINE CR1 -488 1089 947 753 261 0 33 chrX 46970866 46971050 -115628880 + MER5B DNA MER1_type 1 178 0 227 250 0 60 chrX 46971089 46971173 -115628757 + CT-rich Low_complexity Low_complexity 5 83 0 226 173 291 36 chrX 46971231 46971341 -115628589 + MIR3 SINE MIR 13 150 -58 2305 110 0 0 chrX 46971745 46972044 -115627886 + AluSq SINE Alu 1 299 -14 21 57 0 0 chrX 46972138 46972173 -115627757 + AT_rich Low_complexity Low_complexity 1 35 0 1821 128 0 0 chrX 46972174 46972425 -115627505 - AluSx SINE Alu -20 292 42 362 103 0 0 chrX 46972426 46972482 -115627448 - AluSg/x SINE Alu -95 207 158 357 134 0 13 chrX 46972473 46972541 -115627389 - AluSx SINE Alu -252 49 1 * 2228 107 10 3 chrX 46972813 46973112 -115626818 + AluSx SINE Alu 1 301 -11 2264 116 3 0 chrX 46973504 46973796 -115626134 - AluSx SINE Alu -19 293 1 2088 142 54 20 chrX 46973824 46973849 -115626081 - MLT1A1 LTR MaLR 0 365 342 180 0 0 0 chrX 46973849 46973869 -115626061 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2088 142 54 20 chrX 46973869 46974196 -115625734 - MLT1A1 LTR MaLR -23 342 1 325 321 9 46 chrX 46974311 46974420 -115625510 - MER91A DNA MER1_type -91 105 1 261 257 76 76 chrX 46974539 46974710 -115625220 + L2 LINE L2 2871 3041 -272 836 224 49 32 chrX 46974749 46974995 -115624935 + MER67B LTR ERV1 5 254 -407 2132 99 23 7 chrX 46974995 46975297 -115624633 + AluYa5 SINE Alu 5 311 0 362 120 0 0 chrX 46975316 46975366 -115624564 + Alu SINE Alu 1 50 -249 1076 92 42 0 chrX 46975367 46975509 -115624421 + AluSg/x SINE Alu 150 297 -15 639 136 45 0 chrX 46975511 46975621 -115624309 + MER67B LTR ERV1 543 657 -4 312 237 172 32 chrX 46975644 46975737 -115624193 + L2 LINE L2 3208 3313 0 2148 98 0 21 chrX 46975763 46976070 -115623860 + AluSx SINE Alu 1 301 0 190 250 143 0 chrX 46976156 46976212 -115623718 + MIR SINE MIR 36 99 -163 1875 150 0 20 chrX 46976233 46976527 -115623403 + AluJb SINE Alu 1 288 -24 842 132 0 23 chrX 46976536 46976665 -115623265 - FLAM_C SINE Alu -17 126 1 1826 182 57 76 chrX 46976677 46977150 -115622780 + MER31B LTR ERV1 1 464 -2 956 196 26 10 chrX 46977292 46977486 -115622444 + MIR SINE MIR 2 198 -64 2521 76 0 0 chrX 46977487 46977789 -115622141 + AluSc SINE Alu 1 302 -7 1176 85 0 0 chrX 46977800 46977941 -115621989 + AluSq/x SINE Alu 1 141 -171 2058 95 0 61 chrX 46977942 46978278 -115621652 + AluSx SINE Alu 12 329 0 200 224 0 41 chrX 46979815 46979864 -115620066 - MIR SINE MIR -99 163 117 202 330 0 20 chrX 46980368 46980468 -115619462 + CT-rich Low_complexity Low_complexity 4 101 0 247 284 84 42 chrX 46980747 46980842 -115619088 - L2 LINE L2 0 3272 3174 958 158 16 32 chrX 46980921 46981051 -115618879 + MER53 DNA DNA 1 129 -60 2216 105 28 0 chrX 46981051 46981337 -115618593 + AluSx SINE Alu 1 294 -18 958 158 16 32 chrX 46981337 46981396 -115618534 + MER53 DNA DNA 129 187 -2 2449 71 3 0 chrX 46981509 46981804 -115618126 + AluSx SINE Alu 1 296 -16 711 298 256 13 chrX 46981804 46982506 -115617424 - L2 LINE L2 -551 2763 1891 871 167 0 0 chrX 46983078 46983210 -115616720 - FLAM_C SINE Alu -11 132 1 191 299 52 31 chrX 46983250 46983347 -115616583 - L2 LINE L2 -1688 1626 1528 1854 206 81 4 chrX 46983542 46983999 -115615931 + Charlie4a DNA MER1_type 17 508 0 816 202 35 40 chrX 46984014 46984212 -115615718 - MIR SINE MIR -4 258 62 2262 92 14 3 chrX 46984213 46984508 -115615422 + AluSx SINE Alu 1 298 -14 820 283 197 25 chrX 46984733 46984888 -115615042 - L2 LINE L2 0 3313 3186 866 188 40 143 chrX 46984888 46985265 -115614665 + MER46C DNA MER2_type 1 338 0 820 283 197 25 chrX 46985265 46985515 -115614415 - L2 LINE L2 -127 3186 2838 283 278 61 35 chrX 46986199 46986314 -115613616 + L2 LINE L2 3123 3240 -32 344 103 17 0 chrX 46986879 46986937 -115612993 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 180 244 39 118 chrX 46987410 46987537 -115612393 + L3 LINE CR1 1423 1539 -38 2328 100 0 19 chrX 46987717 46988026 -115611904 - AluSx SINE Alu -9 303 1 2221 104 14 0 chrX 46988175 46988464 -115611466 - AluSx SINE Alu -19 293 1 380 293 0 0 chrX 46991381 46991463 -115608467 + MIR SINE MIR 46 127 -81 376 321 129 13 chrX 46991466 46991730 -115608200 - L2 LINE L2 -45 3227 2929 296 173 0 0 chrX 46991739 46991791 -115608139 + L2 LINE L2 2867 2918 -354 236 319 44 35 chrX 46991771 46991884 -115608046 - L2 LINE L2 -31 3282 3169 * 250 259 24 106 chrX 46991955 46992040 -115607890 - L2 LINE L2 -74 3198 3121 517 147 78 0 chrX 46992055 46992157 -115607773 - MIR SINE MIR -90 172 63 836 296 140 17 chrX 46993118 46993590 -115606340 + L2 LINE L2 2734 3259 -13 381 279 7 68 chrX 46993710 46993857 -115606073 - MIR SINE MIR -62 146 9 245 169 0 108 chrX 46993922 46993987 -115605943 - L1MC4a LINE L1 -1680 6128 6071 1868 145 7 0 chrX 46994044 46994326 -115605604 - AluSx SINE Alu -26 286 3 520 315 59 69 chrX 46994859 46995234 -115604696 + L2 LINE L2 2511 2881 -433 384 243 328 32 chrX 46995234 46995481 -115604449 + L2 LINE L2 2394 2713 -601 225 0 0 0 chrX 46995490 46995515 -115604415 + (T)n Simple_repeat Simple_repeat 1 25 0 774 294 87 7 chrX 46995616 46995904 -115604026 + L2 LINE L2 2675 2982 -290 1058 98 7 0 chrX 46995976 46996119 -115603811 - AluY SINE Alu -167 144 1 761 126 67 17 chrX 46996127 46996246 -115603684 - FLAM_C SINE Alu -7 126 2 397 181 0 0 chrX 46996248 46996320 -115603610 - L1 LINE L1 -1132 5014 4943 31 0 0 0 chrX 46996339 46996370 -115603560 + AT_rich Low_complexity Low_complexity 1 31 0 1438 82 5 10 chrX 46996370 46996565 -115603365 + AluSg SINE Alu 1 194 -116 1285 154 0 9 chrX 46996569 46996790 -115603140 - AluJo SINE Alu -7 305 87 1476 178 20 14 chrX 46996944 46997237 -115602693 - AluJb SINE Alu -17 295 1 21 0 0 0 chrX 46998745 46998766 -115601164 + GC_rich Low_complexity Low_complexity 1 21 0 535 290 102 28 chrX 46999188 46999443 -115600487 - L2 LINE L2 0 3313 3040 1032 197 6 0 chrX 46999616 46999794 -115600136 - MER20 DNA MER1_type -2 217 39 2019 132 7 0 chrX 47000478 47000788 -115599142 - AluSx SINE Alu 0 312 1 366 258 52 0 chrX 47000803 47000900 -115599030 - MIR SINE MIR -73 189 88 638 147 0 0 chrX 47001083 47001178 -115598752 - AluSg/x SINE Alu -25 287 193 2277 94 0 0 chrX 47001178 47001486 -115598444 - AluSg SINE Alu -2 308 1 1708 185 0 0 chrX 47001488 47001785 -115598145 - AluJb SINE Alu -15 297 1 2335 82 7 0 chrX 47001965 47002269 -115597661 - AluSx SINE Alu -6 306 1 1469 189 7 0 chrX 47002297 47002578 -115597352 + AluJo SINE Alu 1 283 -29 1473 152 117 8 chrX 47002597 47002861 -115597069 + AluSg SINE Alu 3 295 -15 511 296 73 45 chrX 47003156 47003457 -115596473 - L1MC4 LINE L1 -126 7916 7625 2356 69 3 3 chrX 47003457 47003761 -115596169 - AluSp SINE Alu -9 304 1 511 296 73 45 chrX 47003761 47003943 -115595987 - L1MC4 LINE L1 -417 7625 7311 880 122 0 43 chrX 47003944 47004083 -115595847 + FLAM_C SINE Alu 1 133 0 260 253 13 0 chrX 47004093 47004168 -115595762 - L1MC4a LINE L1 -397 7411 7336 1121 94 26 42 chrX 47004176 47004340 -115595590 - L1MB2 LINE L1 0 6171 6009 2155 105 0 3 chrX 47004340 47004634 -115595296 + AluSc SINE Alu 1 293 -16 1121 94 26 42 chrX 47004634 47004660 -115595270 - L1MB2 LINE L1 -162 6009 5984 26 50 0 0 chrX 47004660 47004700 -115595230 + AT_rich Low_complexity Low_complexity 1 40 0 2365 84 0 3 chrX 47004700 47005010 -115594920 - AluSx SINE Alu -3 309 1 1057 160 6 0 chrX 47005171 47005346 -115594584 - AluJo/FRAM SINE Alu -3 309 134 1786 114 77 0 chrX 47005346 47005619 -115594311 - AluSx SINE Alu -12 300 7 981 189 5 21 chrX 47006517 47006707 -115593223 + MER5A DNA MER1_type 3 189 0 2266 97 6 0 chrX 47006924 47007235 -115592695 - AluSq SINE Alu 0 313 1 291 271 0 25 chrX 47008008 47008126 -115591804 + GA-rich Low_complexity Low_complexity 5 119 0 443 179 2 4 chrX 47009322 47009406 -115590524 + Tigger4(Zombi) DNA MER2_type 2 2731 0 2211 106 7 0 chrX 47009417 47009720 -115590210 - AluSg SINE Alu -5 305 1 737 244 98 79 chrX 47009753 47009924 -115590006 - MIR SINE MIR -1 261 95 1475 188 3 36 chrX 47009924 47010092 -115589838 - AluJb SINE Alu -9 293 138 1690 107 0 81 chrX 47010092 47010218 -115589712 - AluSx SINE Alu 0 312 177 2237 99 0 3 chrX 47010218 47010531 -115589399 - AluSq SINE Alu -1 312 1 1690 107 0 81 chrX 47010531 47010702 -115589228 - AluSx SINE Alu -135 177 39 1475 188 3 36 chrX 47010702 47010836 -115589094 - AluJb SINE Alu -164 138 1 737 244 98 79 chrX 47010836 47010918 -115589012 - MIR SINE MIR -167 95 3 489 125 10 62 chrX 47011038 47011134 -115588796 + AluJo SINE Alu 45 135 -177 249 110 44 80 chrX 47011213 47011263 -115588667 - MIR SINE MIR -61 147 104 325 322 124 11 chrX 47012011 47012188 -115587742 - MIR SINE MIR -46 216 20 192 40 0 0 chrX 47012188 47012213 -115587717 + (T)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chrX 47012691 47012715 -115587215 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2107 101 0 7 chrX 47012715 47013001 -115586929 - AluSx SINE Alu -28 284 1 210 245 61 0 chrX 47013021 47013070 -115586860 + MIR SINE MIR 175 226 -36 4229 160 120 10 chrX 47013210 47013987 -115585943 - MER21B LTR ERV1 -1 862 1 2205 87 0 0 chrX 47014051 47014339 -115585591 + AluSx SINE Alu 2 289 -23 2585 122 60 58 chrX 47014385 47014810 -115585120 - MER21B-int LTR ERV1 -60 4131 3703 751 221 0 0 chrX 47014810 47014941 -115584989 - FLAM_A SINE Alu -1 132 2 2585 122 60 58 chrX 47014941 47014984 -115584946 - MER21B-int LTR ERV1 -488 3703 3662 404 187 72 191 chrX 47016167 47016318 -115583612 + MIR SINE MIR 34 155 -107 1652 83 43 4 chrX 47016318 47016548 -115583382 + AluSx SINE Alu 56 294 -18 404 187 72 191 chrX 47016548 47016605 -115583325 + MIR SINE MIR 155 217 -45 462 209 43 74 chrX 47016745 47016908 -115583022 + MER46C DNA MER2_type 180 337 -1 516 249 113 49 chrX 47017637 47017822 -115582108 + MIR SINE MIR 1 197 -65 1484 124 60 74 chrX 47017851 47018149 -115581781 - AluJb SINE Alu -6 306 13 2159 86 13 29 chrX 47018161 47018474 -115581456 - AluSg SINE Alu -2 308 1 368 182 0 165 chrX 47018681 47018802 -115581128 - L2 LINE L2 0 3272 3172 186 342 144 0 chrX 47018857 47018968 -115580962 - L2 LINE L2 -7 3306 3180 226 240 80 16 chrX 47019126 47019251 -115580679 + L1ME4a LINE L1 5296 5428 -2380 233 119 24 0 chrX 47019306 47019348 -115580582 + (TA)n Simple_repeat Simple_repeat 1 43 0 365 280 91 59 chrX 47019846 47020164 -115579766 - L2 LINE L2 -179 3093 2776 859 254 30 9 chrX 47020531 47020750 -115579180 - MIR SINE MIR 0 262 36 746 217 63 24 chrX 47020764 47020971 -115578959 + MIR SINE MIR 2 216 -46 251 150 0 0 chrX 47021267 47021307 -115578623 + L1ME4a LINE L1 6000 6039 -82 259 299 133 31 chrX 47021544 47021802 -115578128 + L1ME4a LINE L1 5255 5485 -636 2279 87 0 0 chrX 47021802 47022100 -115577830 - AluSg SINE Alu -12 298 1 259 299 133 31 chrX 47022100 47022323 -115577607 + L1ME4a LINE L1 5485 5791 -330 1974 107 17 7 chrX 47022856 47023156 -115576774 - AluSq SINE Alu -10 303 1 803 193 16 21 chrX 47023265 47023457 -115576473 - L1MC4 LINE L1 0 8042 7852 1814 164 0 0 chrX 47023468 47023761 -115576169 - AluJb SINE Alu -19 293 1 234 293 40 20 chrX 47024130 47024229 -115575701 + L1ME4a LINE L1 5969 6069 -52 433 291 76 67 chrX 47025530 47025687 -115574243 - MIR SINE MIR -31 231 70 2074 141 0 0 chrX 47025687 47025999 -115573931 - AluSx SINE Alu 0 312 1 433 291 76 67 chrX 47025999 47026051 -115573879 - MIR SINE MIR -192 70 20 315 298 93 58 chrX 47026723 47026885 -115573045 + L2 LINE L2 2372 2548 -766 2225 84 27 10 chrX 47026885 47027184 -115572746 - AluSq SINE Alu -9 304 1 315 298 93 58 chrX 47027184 47027279 -115572651 + L2 LINE L2 2548 2638 -676 1399 209 107 59 chrX 47027321 47028018 -115571912 - L1MC5 LINE L1 -36 7925 7262 345 136 106 0 chrX 47028023 47028089 -115571841 + L1MC5 LINE L1 7269 7341 -620 355 91 0 0 chrX 47028218 47028262 -115571668 + Alu SINE Alu 1 44 -258 2185 97 10 0 chrX 47028311 47028600 -115571330 + AluSq SINE Alu 1 292 -21 2227 84 6 6 chrX 47028639 47028950 -115570980 - AluY SINE Alu 0 311 1 349 149 90 15 chrX 47028953 47029020 -115570910 + L1MC5 LINE L1 7647 7718 -243 1055 142 9 75 chrX 47029021 47029233 -115570697 + MER20 DNA MER1_type 2 199 -20 23 0 0 0 chrX 47029248 47029271 -115570659 + AT_rich Low_complexity Low_complexity 1 23 0 1133 198 169 0 chrX 47029274 47029522 -115570408 + AluSg SINE Alu 1 290 -10 821 152 0 36 chrX 47029584 47029722 -115570208 - FLAM_C SINE Alu 0 133 1 2010 125 0 7 chrX 47029724 47030027 -115569903 - AluSx SINE Alu -11 301 1 2158 82 62 0 chrX 47030055 47030347 -115569583 - AluY SINE Alu -1 310 1 263 203 17 0 chrX 47030349 47030408 -115569522 - L1MC4 LINE L1 -1031 7011 6952 847 208 66 129 chrX 47030431 47030555 -115569375 - L1MC5 LINE L1 -35 7926 7796 2030 111 0 7 chrX 47030555 47030852 -115569078 - AluSg SINE Alu -15 295 1 847 208 66 129 chrX 47030852 47030914 -115569016 - L1MC5 LINE L1 -165 7796 7732 2242 88 16 0 chrX 47030914 47031219 -115568711 + AluY SINE Alu 1 310 -1 847 208 66 129 chrX 47031219 47031319 -115568611 - L1MC5 LINE L1 -229 7732 7627 2040 104 7 3 chrX 47031319 47031608 -115568322 - AluSg SINE Alu -19 291 2 847 208 66 129 chrX 47031608 47031910 -115568020 - L1MC5 LINE L1 -334 7627 7373 261 170 0 0 chrX 47031948 47031995 -115567935 - L1MC5 LINE L1 -584 7377 7331 1945 166 23 8 chrX 47031996 47032038 -115567892 - Charlie5 DNA MER1_type 0 2624 2584 2375 56 7 7 chrX 47032038 47032342 -115567588 - AluY SINE Alu -7 304 1 1945 166 23 8 chrX 47032342 47032684 -115567246 - Charlie5 DNA MER1_type -40 2584 2234 677 163 8 0 chrX 47032685 47032808 -115567122 - Charlie5 DNA MER1_type -2488 124 1 2228 218 38 69 chrX 47032809 47033598 -115566332 - L1MC5 LINE L1 -631 7330 6563 2234 80 0 0 chrX 47033764 47034051 -115565879 + AluY SINE Alu 1 287 -24 705 260 64 69 chrX 47034303 47035231 -115564699 - L1MC4 LINE L1 -1 8041 7111 291 258 75 66 chrX 47035204 47035484 -115564446 - L1MC4a LINE L1 -1630 6178 5865 * 2376 50 0 25 chrX 47035484 47035802 -115564128 + AluY SINE Alu 1 310 -1 291 258 75 66 chrX 47035802 47035844 -115564086 - L1MC4a LINE L1 -1943 5865 5825 292 357 86 0 chrX 47035851 47035991 -115563939 + L2 LINE L2 2696 2847 -467 24 0 0 0 chrX 47036050 47036074 -115563856 + AT_rich Low_complexity Low_complexity 1 24 0 1573 187 10 0 chrX 47036104 47036393 -115563537 - AluJo SINE Alu -20 292 1 1934 154 0 0 chrX 47036495 47036794 -115563136 + AluJb SINE Alu 1 299 -13 325 267 144 34 chrX 47037148 47037294 -115562636 + L2 LINE L2 3147 3308 -5 428 285 70 47 chrX 47038023 47038237 -115561693 - MIR SINE MIR -24 238 20 759 247 55 90 chrX 47039279 47039642 -115560288 - L2 LINE L2 -19 3253 2906 269 196 0 0 chrX 47041280 47041331 -115558599 + MER4-int LTR ERV1 1111 1161 -5437 397 348 191 12 chrX 47041502 47041758 -115558172 - L2 LINE L2 0 3272 2971 * 868 170 7 13 chrX 47041755 47041908 -115558022 + MIR SINE MIR 22 173 -89 564 272 76 34 chrX 47042500 47042928 -115557002 - L1MC4a LINE L1 -128 5993 5549 513 233 204 0 chrX 47043169 47043345 -115556585 + MIR SINE MIR 22 233 -29 319 266 0 0 chrX 47043358 47043422 -115556508 - MIR3 SINE MIR -37 171 108 281 191 0 0 chrX 47043470 47043517 -115556413 + MER5B DNA MER1_type 3 49 -129 208 254 60 15 chrX 47043622 47043689 -115556241 - MER5A DNA MER1_type -24 165 96 322 260 29 19 chrX 47043820 47043924 -115556006 - MIR SINE MIR -84 124 20 678 361 58 27 chrX 47044136 47044549 -115555381 - L2 LINE L2 -20 3252 2827 259 315 56 19 chrX 47044639 47044747 -115555183 - MER5B DNA MER1_type -63 115 4 466 265 38 8 chrX 47044940 47045072 -115554858 + L2 LINE L2 3137 3272 0 338 238 246 0 chrX 47045613 47045735 -115554195 - MIR3 SINE MIR -15 193 42 188 196 0 20 chrX 47047068 47047119 -115552811 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 221 296 12 0 chrX 47047145 47047226 -115552704 + (TTCA)n Simple_repeat Simple_repeat 3 84 0 506 343 54 43 chrX 47047231 47047601 -115552329 - L2 LINE L2 0 3272 2899 330 311 59 0 chrX 47047657 47047776 -115552154 - L2 LINE L2 -535 2779 2654 1544 94 0 19 chrX 47047805 47047941 -115551989 + AluSx SINE Alu 1 133 -179 2185 100 0 0 chrX 47047941 47048241 -115551689 + AluSq SINE Alu 1 300 -13 1544 94 0 19 chrX 47048241 47048317 -115551613 + AluSx SINE Alu 133 209 -103 333 109 0 0 chrX 47048317 47048372 -115551558 + Alu SINE Alu 245 299 -1 2213 100 3 0 chrX 47048395 47048696 -115551234 + AluSx SINE Alu 2 303 -9 285 313 85 59 chrX 47048711 47048983 -115550947 - L2 LINE L2 -153 3119 2841 364 248 106 93 chrX 47049111 47049357 -115550573 - HAL1 LINE L1 -14 2493 2245 372 285 112 42 chrX 47049411 47049625 -115550305 - HAL1b LINE L1 -405 943 715 1049 252 140 49 chrX 47049658 47050112 -115549818 - HAL1 LINE L1 -365 2142 1610 1628 79 0 0 chrX 47050112 47050326 -115549604 - AluY SINE Alu -16 295 82 1049 252 140 49 chrX 47050326 47050521 -115549409 - HAL1 LINE L1 -897 1610 1434 * 3301 201 66 12 chrX 47050497 47051550 -115548380 - L1MDa LINE L1 -4982 1558 31 2300 68 0 7 chrX 47051559 47051890 -115548040 - AluSq SINE Alu 0 313 1 1766 263 61 83 chrX 47051912 47053174 -115546756 - HAL1 LINE L1 -1080 1821 395 461 186 0 143 chrX 47053181 47053249 -115546681 - HAL1 LINE L1 -123 2384 2345 2389 87 0 0 chrX 47053249 47053561 -115546369 - AluSx SINE Alu 0 312 1 461 186 0 143 chrX 47053561 47053632 -115546298 - HAL1 LINE L1 -162 2345 2265 234 157 59 0 chrX 47053765 47053816 -115546114 - HAL1b LINE L1 -549 799 746 1136 205 184 21 chrX 47053867 47054248 -115545682 - HAL1 LINE L1 -355 2152 1710 1089 279 97 36 chrX 47054275 47054751 -115545179 + MLT1K LTR MaLR 81 585 -3 987 290 68 54 chrX 47055094 47055918 -115544012 + L1ME3A LINE L1 5256 5940 -230 233 186 169 17 chrX 47056215 47056274 -115543656 + LTR67 LTR ERVL 432 499 -58 1750 118 0 4 chrX 47056275 47056521 -115543409 + AluSp SINE Alu 1 245 -68 2085 95 0 3 chrX 47056521 47056803 -115543127 - AluSc SINE Alu -26 283 1 1686 230 123 33 chrX 47056811 47057480 -115542450 - HAL1 LINE L1 -786 1721 993 201 250 42 0 chrX 47058278 47058326 -115541604 - L2 LINE L2 -1 3312 3263 * 412 299 65 19 chrX 47058310 47058464 -115541466 - MIR SINE MIR -93 169 9 23 0 0 0 chrX 47058682 47058705 -115541225 + AT_rich Low_complexity Low_complexity 1 23 0 2133 120 0 0 chrX 47058705 47059005 -115540925 - AluSx SINE Alu -12 300 1 352 274 33 46 chrX 47059009 47059162 -115540768 - HAL1 LINE L1 0 2507 2357 771 281 70 65 chrX 47059170 47059573 -115540357 + MLT1L LTR MaLR 89 598 -17 438 238 164 71 chrX 47059590 47059623 -115540307 - HAL1 LINE L1 -160 2347 2318 2108 120 0 0 chrX 47059623 47059924 -115540006 - AluSx SINE Alu -11 301 1 438 238 164 71 chrX 47059924 47060268 -115539662 - HAL1 LINE L1 -189 2318 1935 2435 40 0 7 chrX 47060276 47060577 -115539353 - AluY SINE Alu -12 299 1 2144 98 0 7 chrX 47060579 47060875 -115539055 - AluSx SINE Alu -18 294 1 835 139 0 29 chrX 47060912 47061049 -115538881 + AluJb SINE Alu 1 133 -179 439 286 135 70 chrX 47061303 47061659 -115538271 - HAL1 LINE L1 -2127 380 2 351 280 40 124 chrX 47061739 47061789 -115538141 + MIR SINE MIR 20 73 -189 2421 62 0 10 chrX 47061789 47062095 -115537835 - AluSq SINE Alu -10 303 1 351 280 40 124 chrX 47062095 47062294 -115537636 + MIR SINE MIR 73 248 -14 1230 87 6 0 chrX 47062308 47062480 -115537450 - AluSg/x SINE Alu -11 299 127 372 306 18 0 chrX 47062905 47063016 -115536914 - MIR3 SINE MIR -34 174 62 248 260 23 141 chrX 47063040 47063217 -115536713 - MIR3 SINE MIR -4 204 49 282 238 60 24 chrX 47063601 47063685 -115536245 - MIR3 SINE MIR -45 163 77 430 297 131 57 chrX 47063852 47064602 -115535328 + L2 LINE L2 2459 3268 -4 457 200 10 40 chrX 47064848 47064948 -115534982 - MIR SINE MIR -91 171 75 189 0 0 0 chrX 47065193 47065214 -115534716 + (A)n Simple_repeat Simple_repeat 1 21 0 1660 172 0 10 chrX 47065214 47065505 -115534425 + AluJb SINE Alu 1 288 -24 233 211 105 0 chrX 47065742 47065799 -115534131 - L1ME4a LINE L1 -96 6025 5963 271 224 207 0 chrX 47065817 47065933 -115533997 - L1ME4a LINE L1 -201 5920 5781 815 108 0 8 chrX 47066344 47066474 -115533456 - L1MB8 LINE L1 -1 6177 6049 2105 134 50 22 chrX 47066485 47066843 -115533087 - THE1C LTR MaLR -7 368 1 1131 172 22 22 chrX 47066843 47067075 -115532855 - L1MB7 LINE L1 -140 6044 5813 1654 161 68 0 chrX 47067096 47067388 -115532542 - AluJb SINE Alu 0 312 1 5837 122 58 36 chrX 47067389 47067537 -115532393 - L1MC2 LINE L1 -15 6329 6186 2150 96 0 0 chrX 47067537 47067869 -115532061 - AluSg SINE Alu 0 332 1 5837 122 58 36 chrX 47067869 47068024 -115531906 - L1MC2 LINE L1 -158 6186 6036 1759 98 117 4 chrX 47068024 47068289 -115531641 + AluSg1 SINE Alu 1 295 -14 5837 122 58 36 chrX 47068289 47069021 -115530909 - L1MC2 LINE L1 -308 6036 5269 2158 96 0 3 chrX 47069034 47069325 -115530605 + AluSg SINE Alu 1 290 -20 785 181 0 8 chrX 47069327 47069460 -115530470 - AluJo SINE Alu -178 134 3 967 200 9 5 chrX 47069462 47069677 -115530253 - L1MC2 LINE L1 -849 5297 5082 1227 175 5 5 chrX 47069677 47069900 -115530030 + AluSg/x SINE Alu 85 307 -5 3213 221 19 60 chrX 47069901 47070349 -115529581 - L1 LINE L1 -1059 5087 4622 2238 97 0 0 chrX 47070349 47070647 -115529283 + AluSg SINE Alu 1 298 -12 3213 221 19 60 chrX 47070647 47070973 -115528957 - L1 LINE L1 -1524 4622 4335 838 107 16 0 chrX 47070973 47071095 -115528835 + FLAM_C SINE Alu 18 141 -2 3213 221 19 60 chrX 47071095 47071404 -115528526 - L1 LINE L1 -1811 4335 4015 2286 96 3 3 chrX 47071412 47071725 -115528205 - AluSq SINE Alu 0 313 1 1591 162 37 0 chrX 47071725 47071995 -115527935 - AluJb SINE Alu -5 307 27 1703 120 101 0 chrX 47071995 47072269 -115527661 - AluSx SINE Alu -8 304 1 5131 181 48 80 chrX 47072314 47073638 -115526292 - L1MC4 LINE L1 0 8042 6762 399 277 30 10 chrX 47073898 47073999 -115525931 - MIR SINE MIR -4 258 156 2281 77 0 13 chrX 47074051 47074402 -115525528 + AluSg SINE Alu 1 310 0 409 292 187 0 chrX 47074488 47074628 -115525302 + MIR SINE MIR 28 189 -72 1582 132 12 96 chrX 47074693 47075027 -115524903 - AluJo SINE Alu -6 306 1 2324 88 3 0 chrX 47075116 47075423 -115524507 + AluSx SINE Alu 3 310 -2 436 148 14 169 chrX 47075580 47075651 -115524279 + MLT1E LTR MaLR 1 42 -551 2235 82 0 0 chrX 47075651 47075969 -115523961 - AluSq SINE Alu 0 318 1 436 148 14 169 chrX 47075969 47076038 -115523892 + MLT1E LTR MaLR 42 120 -473 469 184 29 10 chrX 47076046 47076149 -115523781 - MLT1E LTR MaLR -433 160 56 2364 47 3 7 chrX 47076157 47076456 -115523474 + AluY SINE Alu 5 302 -9 1644 136 0 121 chrX 47076467 47076821 -115523109 + AluJo SINE Alu 1 302 0 1768 173 92 43 chrX 47076861 47077166 -115522764 + MLT1E LTR MaLR 206 534 -59 2110 106 10 13 chrX 47077166 47077477 -115522453 - AluSq SINE Alu -3 310 1 1768 173 92 43 chrX 47077477 47077541 -115522389 + MLT1E LTR MaLR 534 593 0 1685 164 35 0 chrX 47077582 47077748 -115522182 - AluJo SINE Alu -15 297 115 216 0 0 0 chrX 47077748 47077772 -115522158 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1685 164 35 0 chrX 47077772 47077892 -115522038 - AluJo SINE Alu -197 115 1 2388 74 0 0 chrX 47078018 47078316 -115521614 + AluSg SINE Alu 1 298 -12 2141 101 3 0 chrX 47078387 47078684 -115521246 - AluSx SINE Alu -14 298 1 856 226 0 0 chrX 47078687 47078846 -115521084 - AluJ SINE Alu -7 295 137 456 289 103 40 chrX 47078863 47079319 -115520611 + L1 LINE L1 4498 4982 -1164 689 112 207 9 chrX 47079358 47079474 -115520456 - AluJ SINE Alu -169 143 5 1372 313 35 16 chrX 47080175 47080372 -115519558 + L2 LINE L2 1961 2153 -1161 3207 138 16 30 chrX 47080372 47080720 -115519210 - MER89 LTR ERV1 0 559 221 2271 96 0 0 chrX 47080720 47081021 -115518909 - AluSx SINE Alu -11 301 1 3207 138 16 30 chrX 47081021 47081239 -115518691 - MER89 LTR ERV1 -338 221 1 1372 313 35 16 chrX 47081239 47081606 -115518324 + L2 LINE L2 2153 2536 -778 228 368 0 0 chrX 47082019 47082095 -115517835 + CT-rich Low_complexity Low_complexity 2 77 0 273 169 99 0 chrX 47082462 47082533 -115517397 + L2 LINE L2 2463 2540 -774 2703 183 45 11 chrX 47082580 47083050 -115516880 + MER21B LTR ERV1 2 487 -376 2211 96 0 7 chrX 47083387 47083717 -115516213 + AluSc SINE Alu 2 329 0 1465 194 57 57 chrX 47083809 47084160 -115515770 + MER21B LTR ERV1 513 863 0 395 169 0 72 chrX 47084166 47084249 -115515681 - L1M4 LINE L1 -1372 4774 4698 1226 197 31 67 chrX 47084272 47084496 -115515434 - L1M4 LINE L1 -1538 4608 4377 2248 97 0 3 chrX 47084496 47084796 -115515134 + AluSx SINE Alu 1 299 -13 738 181 8 8 chrX 47084796 47084929 -115515001 + FLAM_C SINE Alu 1 133 0 1226 197 31 67 chrX 47084929 47085093 -115514837 - L1M4 LINE L1 -1767 4379 4233 * 1498 179 5 73 chrX 47085091 47085260 -115514670 - L1M4 LINE L1 -3166 2980 2801 2092 117 3 7 chrX 47085260 47085569 -115514361 - AluSx SINE Alu -2 310 3 1498 179 5 73 chrX 47085569 47085642 -115514288 - L1M4 LINE L1 -3345 2801 2725 1652 168 3 32 chrX 47085642 47085957 -115513973 - AluJo SINE Alu -6 306 1 1498 179 5 73 chrX 47085957 47086109 -115513821 - L1M4 LINE L1 -3421 2725 2612 1109 275 87 53 chrX 47086113 47086845 -115513085 + L2 LINE L2 2530 3278 -35 342 307 8 39 chrX 47086865 47086992 -115512938 - L3 LINE CR1 -111 1466 1344 753 282 34 56 chrX 47086992 47087097 -115512833 + L1M4 LINE L1 3860 3966 -2180 1955 137 34 3 chrX 47087097 47087390 -115512540 + AluJb SINE Alu 1 302 -10 753 282 34 56 chrX 47087390 47087639 -115512291 + L1M4 LINE L1 3966 4206 -1940 2039 114 4 0 chrX 47087656 47087949 -115511981 + AluSq SINE Alu 11 304 0 324 322 0 0 chrX 47087949 47088039 -115511891 - L3 LINE CR1 -223 1354 1265 244 313 131 0 chrX 47088039 47088138 -115511792 + MIR3 SINE MIR 97 208 0 191 160 368 56 chrX 47088122 47088224 -115511706 - L3 LINE CR1 -336 1241 1172 * 186 43 0 0 chrX 47088224 47088247 -115511683 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 191 160 368 56 chrX 47088247 47088269 -115511661 - L3 LINE CR1 -405 1172 1078 391 269 72 109 chrX 47089421 47089614 -115510316 + MIR3 SINE MIR 1 186 -22 321 230 81 11 chrX 47089706 47089793 -115510137 + MER81 DNA DNA 20 112 -2 351 150 0 0 chrX 47089815 47089875 -115510055 + (TTA)n Simple_repeat Simple_repeat 1 60 0 2473 69 7 3 chrX 47089973 47090276 -115509654 - AluSx SINE Alu -8 304 1 2324 96 7 0 chrX 47090650 47090952 -115508978 + AluSp SINE Alu 1 304 -9 649 257 64 98 chrX 47091034 47091423 -115508507 - L2 LINE L2 0 3272 2897 329 234 140 19 chrX 47091420 47091527 -115508403 + L2 LINE L2 3194 3313 0 * 1314 174 15 0 chrX 47091706 47091907 -115508023 - AluJo SINE Alu -108 204 1 279 306 16 58 chrX 47091908 47092029 -115507901 - L3 LINE CR1 -39 1538 1423 508 232 0 0 chrX 47092050 47092149 -115507781 + MIR3 SINE MIR 95 193 -15 1017 272 118 37 chrX 47092443 47092468 -115507462 - L3 LINE CR1 -17 1560 1538 2008 152 10 7 chrX 47092468 47092770 -115507160 - AluJb SINE Alu -9 303 1 1017 272 118 37 chrX 47092770 47093126 -115506804 - L3 LINE CR1 -39 1538 1148 311 148 182 34 chrX 47093797 47093885 -115506045 + MIR3 SINE MIR 93 193 -15 2003 119 49 0 chrX 47093913 47094199 -115505731 - AluSx SINE Alu -12 300 1 237 324 27 0 chrX 47094648 47094722 -115505208 + L2 LINE L2 2716 2791 -523 198 301 44 53 chrX 47095036 47095149 -115504781 + L2 LINE L2 3146 3257 -56 1641 222 57 16 chrX 47095188 47095630 -115504300 - MLT1C LTR MaLR 0 467 8 475 266 65 35 chrX 47095634 47095803 -115504127 + L2 LINE L2 3136 3309 -4 201 194 0 0 chrX 47095953 47095989 -115503941 - MIR SINE MIR -10 252 217 1049 173 11 6 chrX 47096046 47096225 -115503705 + MIR SINE MIR 81 260 -2 4318 131 9 48 chrX 47096266 47096416 -115503514 - L1MB7 LINE L1 0 6184 6030 891 72 0 0 chrX 47096416 47096527 -115503403 - HY1 scRNA scRNA -1 111 1 4318 131 9 48 chrX 47096527 47097152 -115502778 - L1MB7 LINE L1 -154 6030 5439 462 18 0 0 chrX 47097152 47097207 -115502723 + (TG)n Simple_repeat Simple_repeat 2 56 0 1116 141 41 0 chrX 47098191 47098450 -115501480 - L1MB7 LINE L1 -711 5463 5196 247 258 39 90 chrX 47098739 47098753 -115501177 - L2 LINE L2 -181 3091 3078 189 0 0 0 chrX 47098753 47098774 -115501156 + (GA)n Simple_repeat Simple_repeat 1 21 0 247 258 39 90 chrX 47098774 47098914 -115501016 - L2 LINE L2 -194 3078 2945 267 167 0 83 chrX 47099585 47099681 -115500249 + G-rich Low_complexity Low_complexity 6 93 0 23 33 0 0 chrX 47099981 47100011 -115499919 + GC_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chrX 47100486 47100523 -115499407 + GC_rich Low_complexity Low_complexity 1 37 0 629 256 16 31 chrX 47101598 47101789 -115498141 + MIR3 SINE MIR 20 207 -1 408 304 92 56 chrX 47102248 47102607 -115497323 + L3 LINE CR1 1203 1574 -3 550 251 20 29 chrX 47102848 47103027 -115496903 - MIR SINE MIR -64 198 20 282 284 95 35 chrX 47103517 47103633 -115496297 - MIR SINE MIR -74 188 66 898 182 122 66 chrX 47104261 47104547 -115495383 - AluJo SINE Alu 0 302 1 1173 203 0 64 chrX 47105372 47105638 -115494292 - MIR SINE MIR 0 262 14 366 268 157 33 chrX 47105654 47105696 -115494234 - MIR SINE MIR -66 196 161 2224 108 20 0 chrX 47105696 47105991 -115493939 - AluSq SINE Alu -12 301 1 366 268 157 33 chrX 47105991 47106101 -115493829 - MIR SINE MIR -101 161 25 261 257 27 14 chrX 47106707 47106781 -115493149 - L2 LINE L2 0 3272 3198 207 250 125 0 chrX 47106800 47106856 -115493074 + L2 LINE L2 3251 3313 0 757 210 0 7 chrX 47106966 47107104 -115492826 + FRAM SINE Alu 24 160 -16 220 313 15 0 chrX 47107191 47107258 -115492672 - MIR3 SINE MIR 0 208 141 285 221 22 0 chrX 47107734 47107811 -115492119 + MIR SINE MIR 82 132 -76 269 305 126 11 chrX 47108416 47108511 -115491419 + MIR SINE MIR 157 262 0 581 226 43 154 chrX 47108624 47108974 -115490956 - L2 LINE L2 -37 3235 2925 2286 121 0 9 chrX 47109151 47109466 -115490464 - AluSx SINE Alu 0 312 1 238 323 165 8 chrX 47109528 47109655 -115490275 - L2 LINE L2 -606 2708 2562 440 275 22 14 chrX 47109758 47109896 -115490034 - MIR3 SINE MIR -4 204 66 2569 71 3 6 chrX 47109947 47110278 -115489652 - AluSx SINE Alu 0 332 3 392 306 67 15 chrX 47110548 47110682 -115489248 + MIR SINE MIR 21 161 -101 1886 161 19 19 chrX 47110700 47111011 -115488919 - AluJo SINE Alu 0 312 2 526 216 98 52 chrX 47111717 47111996 -115487934 - HAL1 LINE L1 -10 2497 2203 1929 166 0 19 chrX 47111996 47112304 -115487626 - AluJo SINE Alu -10 302 1 331 244 46 71 chrX 47112371 47112568 -115487362 - HAL1b LINE L1 -411 937 746 312 239 9 55 chrX 47112621 47112730 -115487200 - HAL1 LINE L1 -354 2153 2050 273 206 16 127 chrX 47112739 47112865 -115487065 - L1ME3A LINE L1 -5 6165 6054 2074 109 81 0 chrX 47112929 47113214 -115486716 - AluSx SINE Alu -4 308 1 1987 124 64 0 chrX 47113214 47113496 -115486434 - AluSx SINE Alu -12 300 1 316 299 0 35 chrX 47113497 47113641 -115486289 - HAL1 LINE L1 -1205 1302 1164 1077 81 0 54 chrX 47113677 47113860 -115486070 + FLAM_C SINE Alu 1 175 0 265 257 76 0 chrX 47114724 47114829 -115485101 + MIR SINE MIR 36 148 -60 604 325 54 6 chrX 47115382 47115548 -115484382 + MIR SINE MIR 12 185 -77 2060 130 14 3 chrX 47115607 47115899 -115484031 + AluJo SINE Alu 1 295 -17 2366 120 0 0 chrX 47115899 47116207 -115483723 + AluSx SINE Alu 1 308 -4 192 158 0 0 chrX 47116589 47116627 -115483303 + (CAT)n Simple_repeat Simple_repeat 3 40 0 2401 70 0 23 chrX 47116969 47117269 -115482661 - AluSg1 SINE Alu -16 293 1 2219 115 3 0 chrX 47117304 47117599 -115482331 - AluSq SINE Alu -17 296 1 1648 203 7 0 chrX 47117902 47118193 -115481737 - AluJo SINE Alu -15 297 5 1408 183 133 0 chrX 47118199 47118462 -115481468 - AluJb SINE Alu -14 298 1 960 139 0 89 chrX 47118508 47118688 -115481242 - FRAM SINE Alu -20 156 1 558 203 37 96 chrX 47118704 47118891 -115481039 - L2 LINE L2 -35 3278 3103 562 239 85 65 chrX 47118968 47119169 -115480761 - MIR SINE MIR -47 215 11 367 264 120 16 chrX 47119177 47119302 -115480628 - MIR SINE MIR -77 185 48 363 369 30 12 chrX 47119532 47119700 -115480230 - MER115 DNA AcHobo -436 257 87 292 266 90 21 chrX 47120022 47120273 -115479657 - L1ME4a LINE L1 -22 6099 5795 622 266 44 92 chrX 47120494 47120810 -115479120 - L2 LINE L2 0 3272 2972 233 349 47 0 chrX 47120810 47120916 -115479014 + HAL1 LINE L1 3 113 -2394 3519 253 62 78 chrX 47120931 47121056 -115478874 + HAL1 LINE L1 239 365 -2142 1531 174 60 25 chrX 47121056 47121173 -115478757 + AluJo SINE Alu 3 114 -198 216 0 0 0 chrX 47121173 47121197 -115478733 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1531 174 60 25 chrX 47121197 47121360 -115478570 + AluJo SINE Alu 114 293 -19 3519 253 62 78 chrX 47121360 47121906 -115478024 + HAL1 LINE L1 365 918 -1589 930 142 0 8 chrX 47121906 47122040 -115477890 + FLAM_C SINE Alu 1 133 0 3519 253 62 78 chrX 47122040 47122970 -115476960 + HAL1 LINE L1 918 1862 -645 2318 107 0 0 chrX 47122970 47123270 -115476660 - AluSx SINE Alu -12 300 1 3519 253 62 78 chrX 47123270 47123491 -115476439 + HAL1 LINE L1 1862 2032 -475 2058 145 17 0 chrX 47123491 47123781 -115476149 + AluJb SINE Alu 1 295 -17 3519 253 62 78 chrX 47123781 47123898 -115476032 + HAL1 LINE L1 2032 2149 -358 1438 155 0 5 chrX 47123899 47124112 -115475818 + AluSg/x SINE Alu 84 295 -17 2264 117 0 3 chrX 47124256 47124556 -115475374 + AluSx SINE Alu 1 299 -13 2453 71 7 0 chrX 47124783 47125078 -115474852 + AluSx SINE Alu 1 297 -15 2573 74 0 0 chrX 47125484 47125794 -115474136 - AluY SINE Alu -1 310 1 2244 106 0 0 chrX 47125994 47126316 -115473614 + AluSx SINE Alu 1 322 0 453 324 45 11 chrX 47126456 47126632 -115473298 - MIR3 SINE MIR -7 201 20 561 263 190 5 chrX 47127085 47127290 -115472640 + MIR SINE MIR 1 243 -19 287 306 93 72 chrX 47127718 47127911 -115472019 - MIR SINE MIR -7 255 59 183 239 0 0 chrX 47128298 47128344 -115471586 + (CA)n Simple_repeat Simple_repeat 2 47 0 275 306 14 0 chrX 47128556 47128628 -115471302 + MIR3 SINE MIR 108 180 -28 489 227 66 58 chrX 47128675 47128861 -115471069 - MIR3 SINE MIR -62 146 3 626 244 14 34 chrX 47128867 47129076 -115470854 + L2 LINE L2 2772 2976 -338 2097 191 105 38 chrX 47129863 47131114 -115468816 - L1MB2 LINE L1 -135 6036 4577 2252 107 3 7 chrX 47133569 47133878 -115466052 + AluSg SINE Alu 1 308 -2 383 114 29 0 chrX 47134628 47134698 -115465232 + Charlie5 DNA MER1_type 2553 2624 0 2431 76 3 3 chrX 47134751 47135054 -115464876 + AluSp SINE Alu 1 303 -10 2025 154 0 7 chrX 47135236 47135534 -115464396 + AluJb SINE Alu 1 296 -16 6778 64 20 0 chrX 47336018 47337116 -115262814 - L1PA7 LINE L1 0 6154 5051 1026 121 15 65 chrX 47337217 47337416 -115262514 - LTR1B LTR ERV1 -637 189 1 306 261 128 71 chrX 47337466 47337677 -115262253 + L1MC3 LINE L1 1064 1286 -5130 403 118 47 24 chrX 47337955 47338040 -115261890 - L1MB4 LINE L1 -3 6177 6091 2299 106 0 6 chrX 47338597 47338908 -115261022 - AluSx SINE Alu -3 309 1 2408 75 0 3 chrX 47339223 47339528 -115260402 + AluY SINE Alu 1 304 -7 982 141 50 15 chrX 47339918 47340117 -115259813 - MLT1B LTR MaLR -1 389 184 241 271 14 29 chrX 47340203 47340273 -115259657 - MER5B DNA MER1_type -32 146 78 21 36 0 0 chrX 47340293 47340321 -115259609 + AT_rich Low_complexity Low_complexity 1 28 0 225 65 0 0 chrX 47340368 47340399 -115259531 + Alu SINE Alu 2 32 -269 299 223 123 15 chrX 47340514 47340644 -115259286 + L1MC3 LINE L1 2132 2275 -4151 1582 268 42 71 chrX 47340683 47341542 -115258388 + L1MC3 LINE L1 4462 5257 -1444 2237 100 0 13 chrX 47341542 47341852 -115258078 + AluSg SINE Alu 1 306 -4 1582 268 42 71 chrX 47341852 47342529 -115257401 + L1MC3 LINE L1 5257 5952 -749 258 191 15 15 chrX 47342531 47342599 -115257331 - MER92B LTR ERV1 0 636 569 257 175 0 35 chrX 47342625 47342682 -115257248 + L1MC3 LINE L1 6280 6335 -290 403 216 36 36 chrX 47342684 47342823 -115257107 + MLT1A2 LTR MaLR 2 140 -234 574 205 72 6 chrX 47342954 47343120 -115256810 + LTR1B LTR ERV1 650 826 0 434 290 95 12 chrX 47343794 47343963 -115255967 + MIR SINE MIR 78 260 -2 534 262 148 5 chrX 47344350 47344563 -115255367 - MER45C DNA AcHobo -8 945 703 1090 260 64 14 chrX 47344567 47344928 -115255002 - MER45C DNA AcHobo -574 379 1 223 143 171 14 chrX 47344929 47344999 -115254931 + MIR SINE MIR 68 148 -114 198 103 0 0 chrX 47345002 47345031 -115254899 + (A)n Simple_repeat Simple_repeat 1 29 0 1137 208 50 36 chrX 47345066 47345616 -115254314 + LTR27 LTR ERV1 1 634 -2 2707 119 39 30 chrX 47345689 47346288 -115253642 + MER4E LTR ERV1 1 779 0 4180 147 53 42 chrX 47346288 47347015 -115252915 + MER4E-int LTR ERV1 1 719 -1067 2211 116 0 0 chrX 47347015 47347307 -115252623 - AluSx SINE Alu -20 292 1 4180 147 53 42 chrX 47347307 47347674 -115252256 + MER4E-int LTR ERV1 719 1360 -426 186 43 0 0 chrX 47347674 47347697 -115252233 + (TG)n Simple_repeat Simple_repeat 2 24 0 4180 147 53 42 chrX 47347697 47347720 -115252210 + MER4E-int LTR ERV1 1360 1381 -405 255 171 24 37 chrX 47347700 47347782 -115252148 + MER4B-int LTR ERV1 580 660 -4355 * 7915 122 61 41 chrX 47347788 47348048 -115251882 + MER4B-int LTR ERV1 1346 1599 -5159 438 19 0 0 chrX 47348048 47348102 -115251828 + L1PA3 LINE L1 6099 6152 -3 7915 122 61 41 chrX 47348102 47348479 -115251451 + MER4B-int LTR ERV1 1599 1967 -4791 1924 156 0 13 chrX 47348479 47348780 -115251150 + AluSx SINE Alu 1 297 -15 7915 122 61 41 chrX 47348780 47348949 -115250981 + MER4B-int LTR ERV1 1967 2131 -4627 2399 81 3 7 chrX 47348949 47349259 -115250671 - AluSg1 SINE Alu 0 309 1 7915 122 61 41 chrX 47349259 47350876 -115249054 + MER4B-int LTR ERV1 2131 3003 -3755 2340 76 3 7 chrX 47350876 47351177 -115248753 + AluSc SINE Alu 10 309 0 7915 122 61 41 chrX 47351177 47351272 -115248658 + MER4B-int LTR ERV1 3003 3095 -3663 4090 116 33 29 chrX 47351258 47351923 -115248007 + MER4B-int LTR ERV1 3421 4088 -2670 * 12011 100 27 4 chrX 47351922 47353726 -115246204 + MER4B-int LTR ERV1 4452 6295 -463 336 219 0 0 chrX 47356956 47357020 -115242910 + MER6B DNA MER2_type 11 74 -202 581 200 0 8 chrX 47357167 47357287 -115242643 + MER6B DNA MER2_type 92 210 0 966 151 6 19 chrX 47357359 47357518 -115242412 - AluJb SINE Alu -19 293 137 414 0 0 0 chrX 47359800 47359846 -115240084 + (TG)n Simple_repeat Simple_repeat 2 47 0 1723 107 9 0 chrX 47360845 47361078 -115238852 - AluSq SINE Alu -14 299 65 230 318 20 81 chrX 47361991 47362139 -115237791 + MIR SINE MIR 92 230 -32 344 246 170 28 chrX 47362398 47362702 -115237228 + MLT1J LTR MaLR 110 526 -89 390 313 38 23 chrX 47362744 47362875 -115237055 - MER5B DNA MER1_type -5 173 41 1222 232 38 51 chrX 47362930 47363137 -115236793 - L1MC5 LINE L1 -106 7855 7647 1883 143 7 7 chrX 47363137 47363424 -115236506 + AluJb SINE Alu 1 287 -25 1222 232 38 51 chrX 47363424 47363746 -115236184 - L1MC5 LINE L1 -314 7647 7333 1249 279 117 50 chrX 47363774 47365335 -115234595 - L1MC5 LINE L1 -733 7228 5545 268 204 140 32 chrX 47365504 47365597 -115234333 + L2 LINE L2 3168 3270 -2 383 316 155 11 chrX 47365711 47365989 -115233941 - L2 LINE L2 0 3313 2996 253 129 0 97 chrX 47366176 47366238 -115233692 - AluSp SINE Alu -116 187 132 538 310 77 38 chrX 47366406 47367128 -115232802 + L1MC/D LINE L1 2393 3223 -2923 394 314 78 33 chrX 47367208 47367514 -115232416 + L1MC/D LINE L1 3256 3575 -2571 723 273 71 66 chrX 47367548 47367898 -115232032 + L1MC/D LINE L1 3586 3933 -2278 213 94 0 0 chrX 47367898 47367930 -115232000 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 723 273 71 66 chrX 47367930 47369446 -115230484 + L1MC/D LINE L1 3933 5463 -748 954 152 6 12 chrX 47371109 47371280 -115228650 + MER2 DNA MER2_type 1 170 -175 265 164 0 55 chrX 47371384 47371439 -115228491 + MER2 DNA MER2_type 294 345 0 927 241 94 67 chrX 47371933 47372845 -115227085 + L1MC5 LINE L1 6889 7825 -136 1580 110 0 47 chrX 47372846 47373082 -115226848 + AluSg SINE Alu 1 225 -85 2224 109 18 39 chrX 47373188 47373520 -115226410 + MER4E-int LTR ERV1 6383 6707 -51 204 40 0 0 chrX 47373520 47373545 -115226385 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2224 109 18 39 chrX 47373545 47373596 -115226334 + MER4E-int LTR ERV1 6707 6758 0 2571 112 55 32 chrX 47373596 47374188 -115225742 + MER4E LTR ERV1 1 779 0 988 277 42 37 chrX 47375117 47375575 -115224355 + LTR40c LTR ERVL 1 460 -5 358 313 0 9 chrX 47375797 47375909 -115224021 + MER90 LTR ERV1 18 128 -486 636 278 12 0 chrX 47375913 47376082 -115223848 + MER90 LTR ERV1 444 614 0 659 366 32 42 chrX 47376088 47376465 -115223465 + L2 LINE L2 2878 3250 -22 254 246 262 16 chrX 47376471 47376593 -115223337 - L2 LINE L2 0 3313 3162 369 323 75 57 chrX 47376596 47376878 -115223052 - L2 LINE L2 -10 3303 3017 688 273 43 51 chrX 47376904 47377160 -115222770 - L2 LINE L2 -500 2814 2561 1573 165 32 29 chrX 47377284 47377563 -115222367 + AluJo SINE Alu 7 286 -26 799 190 0 7 chrX 47377563 47377705 -115222225 + Tigger5 DNA MER2_type 98 238 -2085 * 1240 183 0 4 chrX 47377695 47377935 -115221995 + Tigger5 DNA MER2_type 2085 2323 0 317 81 161 0 chrX 47377935 47377997 -115221933 + MLT2B1 LTR ERVL 449 520 0 365 234 21 11 chrX 47378074 47378168 -115221762 - L2 LINE L2 -744 2570 2476 575 332 21 35 chrX 47378263 47378603 -115221327 + MLT1I LTR MaLR 71 405 -4 259 315 15 69 chrX 47378684 47378814 -115221116 - MIR SINE MIR -129 133 11 251 230 0 81 chrX 47378871 47378945 -115220985 - L2 LINE L2 0 3313 3246 23 0 0 0 chrX 47379026 47379049 -115220881 + AT_rich Low_complexity Low_complexity 1 23 0 1392 241 39 32 chrX 47379109 47379219 -115220711 - L1ME LINE L1 -2339 4067 3959 1867 159 3 3 chrX 47379219 47379525 -115220405 + AluJb SINE Alu 1 306 0 1392 241 39 32 chrX 47379525 47380030 -115219900 - L1ME LINE L1 -2447 3959 3447 312 200 30 10 chrX 47380010 47380110 -115219820 - L1ME LINE L1 -3821 2585 2484 * 464 182 66 12 chrX 47380113 47380374 -115219556 - L1ME LINE L1 -5037 1372 1057 1351 286 55 25 chrX 47380376 47380865 -115219065 - L1ME LINE L1 -5875 534 31 2501 199 30 42 chrX 47380902 47381594 -115218336 - L1MDa LINE L1 -4131 2409 1726 1592 190 60 35 chrX 47381598 47382051 -115217879 - L1MDa LINE L1 -4938 1602 1135 2104 107 0 0 chrX 47382051 47382331 -115217599 - AluSg SINE Alu -17 293 14 2180 254 88 18 chrX 47382341 47383156 -115216774 - L1MDa LINE L1 -5501 1039 34 663 315 31 22 chrX 47383933 47384155 -115215775 + MIR SINE MIR 17 240 -22 2302 95 3 10 chrX 47384364 47384670 -115215260 - AluSp SINE Alu -9 304 1 192 331 150 16 chrX 47385182 47385309 -115214621 + L2 LINE L2 3125 3268 -4 863 152 61 18 chrX 47385517 47385682 -115214248 + MER5B DNA MER1_type 7 178 0 477 267 41 51 chrX 47385865 47386060 -115213870 + Charlie8 DNA MER1_type 26 218 -2199 2182 105 0 10 chrX 47386103 47386399 -115213531 - AluSc SINE Alu -10 299 7 3226 246 58 28 chrX 47386421 47386770 -115213160 - L1MEc LINE L1 -2866 3349 3012 1984 86 61 7 chrX 47386770 47387049 -115212881 - AluSc SINE Alu -15 294 1 3226 246 58 28 chrX 47387049 47387557 -115212373 - L1MEc LINE L1 -3203 3012 2521 2425 81 0 0 chrX 47387557 47387855 -115212075 - AluSq SINE Alu -15 298 1 3226 246 58 28 chrX 47387855 47388222 -115211708 - L1MEc LINE L1 -3694 2521 2166 2168 107 10 3 chrX 47388222 47388530 -115211400 - AluSp SINE Alu -3 310 1 3226 246 58 28 chrX 47388530 47388953 -115210977 - L1MEc LINE L1 -4049 2166 1757 2324 94 13 0 chrX 47388953 47389261 -115210669 + AluSx SINE Alu 1 312 0 3226 246 58 28 chrX 47389261 47390656 -115209274 - L1MEc LINE L1 -4458 1757 39 429 215 104 15 chrX 47390666 47390801 -115209129 - L1ME3 LINE L1 0 6162 6016 240 287 0 21 chrX 47391298 47391392 -115208538 - L1M4c LINE L1 -4437 2701 2610 2060 279 54 22 chrX 47391546 47391873 -115208057 - L1M4c LINE L1 -4436 2702 2387 1783 159 0 36 chrX 47391873 47392182 -115207748 - AluJo SINE Alu -7 305 8 2060 279 54 22 chrX 47392182 47393010 -115206920 - L1M4c LINE L1 -4751 2387 1379 5677 208 21 9 chrX 47393020 47394134 -115205796 - L1M4c LINE L1 -5721 1138 11 698 233 64 58 chrX 47394490 47394576 -115205354 + L1MEc LINE L1 2334 2418 -3797 1706 151 7 21 chrX 47394576 47394893 -115205037 + AluJo SINE Alu 1 313 0 698 233 64 58 chrX 47394893 47395051 -115204879 + L1MEc LINE L1 2418 2549 -3666 6626 114 19 11 chrX 47395051 47395234 -115204696 - HSMAR2 DNA Mariner 0 1302 1122 207 0 0 0 chrX 47395234 47395257 -115204673 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6626 114 19 11 chrX 47395257 47396021 -115203909 - HSMAR2 DNA Mariner -180 1122 344 1758 162 0 59 chrX 47396021 47396342 -115203588 - AluJb SINE Alu -10 302 1 6626 114 19 11 chrX 47396342 47396389 -115203541 - HSMAR2 DNA Mariner -958 344 299 519 60 0 0 chrX 47396400 47396467 -115203463 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 866 148 0 0 chrX 47396473 47396601 -115203329 - AluSg/x SINE Alu -36 274 147 709 156 0 0 chrX 47396602 47396711 -115203219 + AluSq/x SINE Alu 25 133 -180 1829 101 61 3 chrX 47396715 47397012 -115202918 - HSMAR2 DNA Mariner -987 315 2 1625 190 32 88 chrX 47397012 47397445 -115202485 + L1MEc LINE L1 2547 2944 -3271 2038 138 3 7 chrX 47397445 47397735 -115202195 + AluJo SINE Alu 10 298 -14 1625 190 32 88 chrX 47397735 47397858 -115202072 + L1MEc LINE L1 2944 3072 -3143 203 260 20 0 chrX 47397956 47398006 -115201924 - L2 LINE L2 0 3272 3222 245 304 14 0 chrX 47398055 47398124 -115201806 + L2 LINE L2 3202 3271 -1 730 263 43 109 chrX 47400297 47400673 -115199257 - L2 LINE L2 0 3313 2963 235 293 47 28 chrX 47401088 47401194 -115198736 - MIR SINE MIR -76 186 79 23 54 0 0 chrX 47401259 47401296 -115198634 + AT_rich Low_complexity Low_complexity 1 37 0 285 225 75 33 chrX 47401427 47401547 -115198383 - L1MC4 LINE L1 -4 8038 7914 462 101 0 0 chrX 47401562 47401631 -115198299 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 2117 243 103 36 chrX 47401684 47401751 -115198179 - L1ME3A LINE L1 -17 6153 6092 2402 81 3 0 chrX 47401751 47402060 -115197870 - AluSg SINE Alu 0 310 1 2117 243 103 36 chrX 47402060 47402579 -115197351 - L1ME3A LINE L1 -78 6092 5609 2336 84 0 3 chrX 47402579 47402875 -115197055 - AluSg SINE Alu -15 295 1 2117 243 103 36 chrX 47402875 47403779 -115196151 - L1ME3A LINE L1 -561 5609 4561 323 271 42 0 chrX 47403779 47403923 -115196007 - L1MC5 LINE L1 -201 7760 7611 311 261 15 46 chrX 47404033 47404163 -115195767 - L1MC4a LINE L1 -833 6975 6850 698 255 74 77 chrX 47404180 47404215 -115195715 - L1MC5 LINE L1 -54 7907 7873 1968 147 0 0 chrX 47404215 47404508 -115195422 + AluJo SINE Alu 1 293 -19 698 255 74 77 chrX 47404508 47404891 -115195039 - L1MC5 LINE L1 -88 7873 7488 2267 59 0 14 chrX 47404891 47405206 -115194724 - AluY SINE Alu 0 311 1 698 255 74 77 chrX 47405206 47405435 -115194495 - L1MC5 LINE L1 -473 7488 7260 1259 222 47 68 chrX 47405536 47406122 -115193808 - L1MC4 LINE L1 -728 7233 6684 323 320 40 32 chrX 47406255 47406380 -115193550 - L2 LINE L2 -2 3270 3145 204 377 49 16 chrX 47407281 47407464 -115192466 - L2 LINE L2 -2919 395 207 312 22 0 44 chrX 47407921 47407993 -115191937 + L1PA3 LINE L1 6105 6174 0 2939 152 22 29 chrX 47408203 47408755 -115191175 - L1MB7 LINE L1 -185 6810 6263 1678 188 42 72 chrX 47408756 47408810 -115191120 + LTR52 LTR ERVL 1 55 -366 2296 100 3 0 chrX 47408810 47409111 -115190819 - AluSp SINE Alu -11 302 1 1678 188 42 72 chrX 47409111 47409488 -115190442 + LTR52 LTR ERVL 55 419 -2 1338 257 167 60 chrX 47409489 47410362 -115189568 + LTR52-int LTR ERVL 3 969 -2587 1439 187 12 4 chrX 47410384 47410635 -115189295 + Tigger3b DNA MER2_type 1 253 -978 1946 118 7 46 chrX 47410637 47410941 -115188989 + AluSx SINE Alu 1 292 -20 306 125 0 0 chrX 47411049 47411097 -115188833 + Alu SINE Alu 254 301 -1 5687 93 42 39 chrX 47411104 47411460 -115188470 + Tigger3b DNA MER2_type 268 621 -2407 2238 95 7 0 chrX 47411460 47411756 -115188174 - AluSp SINE Alu -15 298 1 5687 93 42 39 chrX 47411756 47412046 -115187884 + Tigger3b DNA MER2_type 621 909 -2119 2247 105 0 3 chrX 47412046 47412350 -115187580 - AluSq SINE Alu -10 303 1 5687 93 42 39 chrX 47412350 47412656 -115187274 + Tigger3b DNA MER2_type 909 1224 -7 4546 188 33 7 chrX 47412803 47413660 -115186270 + LTR52-int LTR ERVL 1217 2095 -3590 5089 222 20 30 chrX 47413817 47415056 -115184874 + LTR52-int LTR ERVL 2100 3556 0 1439 209 70 21 chrX 47415059 47415442 -115184488 + LTR52 LTR ERVL 8 409 -12 9039 227 52 73 chrX 47415444 47416551 -115183379 - L1MB7 LINE L1 -730 6261 5132 2581 121 5 27 chrX 47416551 47416989 -115182941 - L1MA6 LINE L1 0 6300 5873 9039 227 52 73 chrX 47416989 47417344 -115182586 - L1MB7 LINE L1 -1859 5132 4771 1997 122 4 0 chrX 47417344 47417623 -115182307 - AluJb SINE Alu -30 282 3 9039 227 52 73 chrX 47417623 47420639 -115179291 - L1MB7 LINE L1 -2220 4771 1925 264 30 0 0 chrX 47420640 47420673 -115179257 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 282 24 0 chrX 47420673 47420758 -115179172 - L1MC4 LINE L1 -1341 6701 6615 310 294 0 22 chrX 47420677 47420769 -115179161 + L1MC4 LINE L1 6614 6703 -1339 * 351 0 0 0 chrX 47420798 47420837 -115179093 + (TG)n Simple_repeat Simple_repeat 2 40 0 402 244 61 9 chrX 47420841 47420956 -115178974 - L1MB7 LINE L1 -5088 1767 1647 1121 222 23 30 chrX 47420960 47421262 -115178668 - LTR55 LTR ERV -2 546 247 932 117 29 18 chrX 47421262 47421433 -115178497 - LTR54 LTR ERV1 0 510 338 1909 243 159 0 chrX 47421433 47421948 -115177982 - L1MB7 LINE L1 -5625 1230 634 447 221 199 33 chrX 47422023 47422204 -115177726 - L1MB7 LINE L1 -6636 223 13 945 210 38 30 chrX 47422214 47422476 -115177454 - L1M4 LINE L1 -1038 5108 4845 3207 169 27 22 chrX 47422480 47423079 -115176851 + L1MC1 LINE L1 5304 5905 -428 821 148 28 0 chrX 47423079 47423221 -115176709 + AluSg/x SINE Alu 161 306 -4 2606 148 5 9 chrX 47423221 47423659 -115176271 + L1MC1 LINE L1 5893 6328 -5 854 277 15 7 chrX 47423749 47424023 -115175907 - L1M4 LINE L1 -1286 4860 4585 711 268 88 19 chrX 47424041 47424452 -115175478 - L1MCa LINE L1 -4271 2474 2036 446 220 34 32 chrX 47424506 47424667 -115175263 - L1MCa LINE L1 -5901 320 6 836 223 42 24 chrX 47424670 47424957 -115174973 - MER33 DNA MER1_type -31 293 2 221 333 76 28 chrX 47424963 47425212 -115174718 - L2 LINE L2 -1134 2180 1920 261 163 0 0 chrX 47425240 47425289 -115174641 + (TG)n Simple_repeat Simple_repeat 1 49 0 302 262 75 16 chrX 47425300 47425487 -115174443 + L1ME3A LINE L1 4860 5057 -1089 816 295 109 48 chrX 47425524 47426185 -115173745 + L1ME3A LINE L1 5262 5962 -208 2214 87 11 0 chrX 47426790 47427092 -115172838 - AluSc SINE Alu 0 305 1 2338 91 0 26 chrX 47428056 47428363 -115171567 - AluSq SINE Alu -14 299 1 306 214 48 87 chrX 47429260 47429386 -115170544 - L1ME3 LINE L1 -81 6081 5961 1640 235 37 82 chrX 47429470 47430278 -115169652 - L1MC5 LINE L1 -430 7531 6760 711 319 39 0 chrX 47430474 47430703 -115169227 - MIR SINE MIR -2 260 23 243 0 0 0 chrX 47431676 47431703 -115168227 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 222 333 18 35 chrX 47431804 47431918 -115168012 + MIR SINE MIR 23 134 -128 2421 116 19 16 chrX 47432180 47432543 -115167387 - THE1B LTR MaLR 0 364 1 598 219 18 7 chrX 47432547 47432691 -115167239 + MLT1A1 LTR MaLR 248 365 0 829 104 55 77 chrX 47433569 47433597 -115166333 + L1MA8 LINE L1 6112 6139 -152 2318 100 3 0 chrX 47433597 47433898 -115166032 + AluSx SINE Alu 1 302 -10 829 104 55 77 chrX 47433898 47434052 -115165878 + L1MA8 LINE L1 6139 6290 -1 1432 264 60 50 chrX 47434074 47434954 -115164976 + L1MC5 LINE L1 6989 7877 -84 292 344 80 16 chrX 47435006 47435131 -115164799 + MER5B DNA MER1_type 46 178 0 295 256 192 64 chrX 47435190 47435604 -115164326 - MLT1J LTR MaLR -126 489 14 214 343 60 30 chrX 47435696 47435830 -115164100 - MIR SINE MIR -17 245 108 1014 100 47 79 chrX 47436332 47436522 -115163408 - MSTB2 LTR MaLR 0 457 274 2163 128 0 3 chrX 47436981 47437293 -115162637 - AluSx SINE Alu -1 311 1 1929 193 141 75 chrX 47437740 47438508 -115161422 - LTR1B LTR ERV1 -8 818 1 261 311 22 11 chrX 47438535 47438625 -115161305 + L1MDb LINE L1 180 270 -6139 2117 259 38 39 chrX 47438876 47439617 -115160313 + L1MDb LINE L1 681 1420 -4989 1198 225 37 90 chrX 47439673 47440130 -115159800 + L1MC/D LINE L1 1 433 -5612 3526 124 32 0 chrX 47440140 47440547 -115159383 + MER41A LTR ERV1 7 436 -118 1984 122 36 16 chrX 47440547 47440850 -115159080 - AluSq SINE Alu -2 311 3 3526 124 32 0 chrX 47440850 47440973 -115158957 + MER41A LTR ERV1 436 554 0 302 252 54 54 chrX 47440975 47441122 -115158808 + L1MC/D LINE L1 436 582 -5463 2172 130 0 16 chrX 47441122 47441438 -115158492 + AluJb SINE Alu 1 311 -1 839 256 54 19 chrX 47441449 47441765 -115158165 + L1MC/D LINE L1 552 878 -5167 1003 168 23 113 chrX 47441839 47441894 -115158036 + L1MC/D LINE L1 2344 2402 -4162 1416 113 24 5 chrX 47441894 47442107 -115157823 + L1MA3 LINE L1 6084 6300 -5 1003 168 23 113 chrX 47442107 47442360 -115157570 + L1MC/D LINE L1 2402 2624 -3940 2246 73 3 27 chrX 47442372 47442672 -115157258 - AluSg SINE Alu -17 293 1 2126 96 44 10 chrX 47443131 47443424 -115156506 + AluSg1 SINE Alu 1 303 -6 790 275 104 78 chrX 47443732 47444023 -115155907 + L1MC/D LINE L1 3333 3615 -2949 1720 168 9 35 chrX 47444023 47444338 -115155592 + AluSx SINE Alu 1 307 -5 790 275 104 78 chrX 47444338 47444881 -115155049 + L1MC/D LINE L1 3615 4200 -2364 2480 150 41 7 chrX 47444881 47445294 -115154636 + MSTA LTR MaLR 1 427 -1 790 275 104 78 chrX 47445294 47445472 -115154458 + L1MC/D LINE L1 4200 4372 -2192 1258 244 96 15 chrX 47445785 47446182 -115153748 - MLT1J1 LTR MaLR -12 434 6 1068 303 35 26 chrX 47446197 47446659 -115153271 + L1MC/D LINE L1 5760 6225 -2001 468 280 97 19 chrX 47446688 47446895 -115153035 + MIR SINE MIR 31 253 -9 2412 87 10 0 chrX 47446933 47447243 -115152687 - AluSp SINE Alu 0 313 1 203 152 0 0 chrX 47447529 47447562 -115152368 + A-rich Low_complexity Low_complexity 3 35 0 510 296 7 0 chrX 47447689 47447831 -115152099 - MER45C DNA AcHobo -108 845 703 1148 258 69 17 chrX 47447835 47448195 -115151735 - MER45C DNA AcHobo -574 379 1 414 257 115 20 chrX 47448195 47448343 -115151587 + MIR SINE MIR 67 228 -34 302 136 0 0 chrX 47448376 47448420 -115151510 + MER4B LTR ERV1 1 44 -566 1461 291 58 60 chrX 47448428 47449361 -115150569 + L1M4 LINE L1 183 1113 -5429 614 327 68 56 chrX 47449384 47450152 -115149778 - L2 LINE L2 -1309 2005 1229 373 228 56 99 chrX 47451050 47451212 -115148718 - MIR SINE MIR -78 184 30 183 276 124 38 chrX 47451397 47451502 -115148428 - MIR SINE MIR -36 226 113 3730 218 85 43 chrX 47451695 47452926 -115147004 - L1MB8 LINE L1 -11 6167 4889 2485 166 14 47 chrX 47452926 47453439 -115146491 - L1MA8 LINE L1 0 6291 5796 236 352 50 11 chrX 47453491 47453670 -115146260 - L1MEc LINE L1 -6166 230 45 276 191 0 0 chrX 47454538 47454593 -115145337 - MIR SINE MIR -65 143 94 209 385 28 7 chrX 47455499 47455642 -115144288 + MIR SINE MIR 67 212 -50 1719 144 14 17 chrX 47455712 47456004 -115143926 + AluJb SINE Alu 17 307 -5 202 271 0 0 chrX 47456386 47456434 -115143496 + L2 LINE L2 3224 3271 -1 1368 276 116 87 chrX 47456859 47457435 -115142495 + MLT1G LTR MaLR 1 588 -2 319 303 49 33 chrX 47457726 47457848 -115142082 - MIR SINE MIR -132 130 7 309 357 42 0 chrX 47460049 47460192 -115139738 - L1MDb LINE L1 -3713 2502 2354 2705 274 60 31 chrX 47460234 47461383 -115138547 - L1MDb LINE L1 -3897 2318 1087 1918 116 74 0 chrX 47461383 47461668 -115138262 - AluSg SINE Alu -4 306 1 2705 274 60 31 chrX 47461668 47462254 -115137676 - L1MDb LINE L1 -5128 1087 519 1064 171 5 42 chrX 47462257 47462474 -115137456 - L1MC3 LINE L1 -172 7613 7405 324 70 0 0 chrX 47462474 47462517 -115137413 + (T)n Simple_repeat Simple_repeat 1 43 0 850 155 7 7 chrX 47462532 47462591 -115137339 - AluJb SINE Alu -130 182 124 495 0 0 0 chrX 47462591 47462646 -115137284 + (TG)n Simple_repeat Simple_repeat 2 56 0 850 155 7 7 chrX 47462646 47462728 -115137202 - AluJb SINE Alu -187 125 41 3049 240 12 31 chrX 47462728 47463561 -115136369 - L1MC3 LINE L1 -369 7416 6600 1377 138 45 16 chrX 47463747 47463993 -115135937 - L1MA3 LINE L1 -160 6145 5893 1846 183 64 21 chrX 47465564 47465953 -115133977 + LTR52 LTR ERVL 3 408 -13 502 263 93 29 chrX 47466044 47466356 -115133574 - L1M4 LINE L1 -840 5306 4975 913 208 21 16 chrX 47466361 47466558 -115133372 - L1M4 LINE L1 -2452 3694 3493 2357 161 3 5 chrX 47466558 47466925 -115133005 - MER47A DNA MER2_type 0 366 1 913 208 21 16 chrX 47466925 47466987 -115132943 - L1M4 LINE L1 -2653 3493 3433 268 254 15 0 chrX 47467165 47467232 -115132698 - L1MDb LINE L1 -6054 342 275 2763 265 118 21 chrX 47467277 47467993 -115131937 - L1MEc LINE L1 -5156 1240 379 2299 70 0 17 chrX 47467993 47468292 -115131638 - AluY SINE Alu -16 295 2 2763 265 118 21 chrX 47468292 47468672 -115131258 - L1MEc LINE L1 -6017 379 37 235 291 33 103 chrX 47468698 47468911 -115131019 - L1M4 LINE L1 -1896 4250 4053 711 266 79 0 chrX 47469049 47469252 -115130678 - MIR SINE MIR -21 241 23 21 0 0 0 chrX 47470470 47470491 -115129439 + AT_rich Low_complexity Low_complexity 1 21 0 2283 183 60 20 chrX 47471323 47471826 -115128104 + Charlie1b DNA MER1_type 1 523 0 8205 28 0 0 chrX 47471856 47473399 -115126531 - L1PA3 LINE L1 -3 6152 4610 1699 166 0 30 chrX 47474118 47474414 -115125516 - AluJb SINE Alu -25 287 1 2303 210 28 28 chrX 47474628 47475133 -115124797 + MLT1D LTR MaLR 1 505 0 965 144 17 204 chrX 47475133 47475535 -115124395 + MLT1D-int LTR MaLR 1 327 -1044 396 164 0 0 chrX 47475604 47475659 -115124271 + MLT1D LTR MaLR 1 55 -450 1406 174 21 90 chrX 47475659 47475993 -115123937 + MLT1D-int LTR MaLR 333 643 -728 1955 210 30 155 chrX 47476052 47476371 -115123559 + MLT1D-int LTR MaLR 632 989 -382 2153 101 0 58 chrX 47476371 47476699 -115123231 + AluSc SINE Alu 1 309 0 1955 210 30 155 chrX 47476699 47477191 -115122739 + MLT1D-int LTR MaLR 989 1337 -34 2016 138 0 0 chrX 47477191 47477495 -115122435 - AluJb SINE Alu 0 304 1 1955 210 30 155 chrX 47477495 47477527 -115122403 + MLT1D-int LTR MaLR 1337 1371 0 2460 175 29 44 chrX 47477532 47477946 -115121984 + MLT1D LTR MaLR 6 501 -94 2773 105 63 19 chrX 47477946 47478356 -115121574 - MSTA LTR MaLR 0 428 1 2460 175 29 44 chrX 47478356 47478449 -115121481 + MLT1D LTR MaLR 501 594 -1 1699 112 59 40 chrX 47478858 47479194 -115120736 - MER61C LTR ERV1 0 434 1 610 265 131 30 chrX 47479248 47479767 -115120163 - L1ME LINE L1 -417 5733 5156 611 141 0 0 chrX 47479767 47479852 -115120078 - MER77 LTR ERV1 -14 591 507 1111 240 52 93 chrX 47479853 47480241 -115119689 - MER77 LTR ERV1 -233 372 1 207 167 0 0 chrX 47480294 47480336 -115119594 + T-rich Low_complexity Low_complexity 1 42 0 513 276 94 65 chrX 47480359 47480775 -115119155 - L1ME LINE L1 -1031 5098 4671 252 308 91 18 chrX 47480902 47481178 -115118752 - L1ME LINE L1 -1621 4508 4213 1992 112 47 4 chrX 47481362 47481640 -115118290 - AluSx SINE Alu -22 290 1 2333 106 0 3 chrX 47482036 47482348 -115117582 + AluSq SINE Alu 1 311 -2 313 263 88 51 chrX 47482495 47482632 -115117298 + MIR SINE MIR 13 154 -108 2193 209 82 29 chrX 47482805 47483326 -115116604 - MER44D DNA MER2_type -1 604 1 2339 161 88 31 chrX 47483359 47483837 -115116093 - MLT1D LTR MaLR 0 505 1 314 286 58 52 chrX 47484430 47484776 -115115154 - L1ME LINE L1 -5030 1089 742 403 286 9 9 chrX 47485299 47485404 -115114526 - MIR SINE MIR -110 152 48 499 295 78 41 chrX 47485921 47486165 -115113765 + MIR SINE MIR 10 262 0 948 268 113 36 chrX 47486664 47486812 -115113118 - L1ME4a LINE L1 -11 6110 5975 1977 103 25 150 chrX 47486812 47487046 -115112884 - MLT1B LTR MaLR 0 390 237 1579 91 0 0 chrX 47487046 47487245 -115112685 - AluSq SINE Alu -114 199 1 1977 103 25 150 chrX 47487245 47487456 -115112474 - MLT1B LTR MaLR -153 237 1 948 268 113 36 chrX 47487456 47487984 -115111946 - L1ME4a LINE L1 -146 5975 5320 492 304 75 19 chrX 47489491 47489705 -115110225 - MIR SINE MIR 0 262 37 483 295 86 30 chrX 47490459 47490669 -115109261 + MIR SINE MIR 40 259 -3 802 292 0 0 chrX 47490790 47490961 -115108969 - MER91B DNA MER1_type -2 188 18 1411 172 0 49 chrX 47490968 47491276 -115108654 + MLT1D LTR MaLR 3 295 -210 566 141 0 0 chrX 47491276 47491378 -115108552 + AluSg/x SINE Alu 203 304 0 2273 107 3 0 chrX 47491403 47491702 -115108228 + AluSx SINE Alu 1 300 -12 340 332 149 44 chrX 47491705 47492274 -115107656 - L2 LINE L2 -634 2680 2052 23 78 0 0 chrX 47492627 47492678 -115107252 + AT_rich Low_complexity Low_complexity 1 51 0 497 278 126 27 chrX 47492841 47493118 -115106812 - HAL1 LINE L1 -194 2313 1980 1768 117 16 8 chrX 47493118 47493366 -115106564 - AluSx SINE Alu -27 285 36 497 278 126 27 chrX 47493366 47493502 -115106428 - HAL1 LINE L1 -527 1980 1859 381 258 96 22 chrX 47493496 47493674 -115106256 - HAL1 LINE L1 -1042 1465 1275 * 456 260 77 0 chrX 47493674 47493778 -115106152 + L2 LINE L2 3198 3309 -4 6189 159 54 25 chrX 47494240 47494746 -115105184 - L1MA9 LINE L1 -2 6310 5820 219 69 0 0 chrX 47494746 47494775 -115105155 + (TG)n Simple_repeat Simple_repeat 2 30 0 6189 159 54 25 chrX 47494775 47495609 -115104321 - L1MA9 LINE L1 -492 5820 5011 234 0 0 0 chrX 47495609 47495635 -115104295 + (TG)n Simple_repeat Simple_repeat 2 27 0 6189 159 54 25 chrX 47495635 47496607 -115103323 - L1MA9 LINE L1 -1301 5011 3912 569 192 8 32 chrX 47496678 47496803 -115103127 + L2 LINE L2 3192 3313 0 308 337 23 58 chrX 47496870 47497131 -115102799 - HAL1 LINE L1 -1187 1320 1069 2273 124 132 5 chrX 47497149 47497529 -115102401 + MSTA LTR MaLR 1 428 0 3242 71 25 7 chrX 47498700 47499136 -115100794 - MLT2A1 LTR ERVL 0 444 1 243 61 0 0 chrX 47499684 47499717 -115100213 + (TG)n Simple_repeat Simple_repeat 1 33 0 394 187 33 33 chrX 47500831 47500922 -115099008 - THE1C LTR MaLR -2 426 336 857 132 5 100 chrX 47500965 47501007 -115098923 - AluJo/FRAM SINE Alu -6 306 262 1943 142 3 7 chrX 47501007 47501309 -115098621 + AluSx SINE Alu 2 302 -10 857 132 5 100 chrX 47501309 47501456 -115098474 - AluJo/FRAM SINE Alu -50 262 135 575 229 179 21 chrX 47501483 47501763 -115098167 + MER5C DNA MER1_type 1 324 0 489 140 54 21 chrX 47502136 47502229 -115097701 - U6 snRNA snRNA -11 96 1 21 0 0 0 chrX 47502597 47502618 -115097312 + AT_rich Low_complexity Low_complexity 1 21 0 7446 35 0 3 chrX 47502694 47503768 -115096162 - L1PA5 LINE L1 0 6154 5082 754 219 127 17 chrX 47504165 47504456 -115095474 + MER41B LTR ERV1 97 384 -94 27 0 0 0 chrX 47504465 47504492 -115095438 + AT_rich Low_complexity Low_complexity 1 27 0 1603 135 45 22 chrX 47504492 47504803 -115095127 - THE1C LTR MaLR -57 318 1 198 0 0 0 chrX 47504933 47504955 -115094975 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 234 0 0 0 chrX 47504954 47504980 -115094950 + (GA)n Simple_repeat Simple_repeat 1 26 0 294 287 24 84 chrX 47505115 47505282 -115094648 - MLT1J LTR MaLR -131 380 224 351 304 89 68 chrX 47505551 47505887 -115094043 - L2 LINE L2 -37 3276 2934 3060 241 54 42 chrX 47505920 47507001 -115092929 - L1MEc LINE L1 -5236 1160 67 261 0 0 0 chrX 47508180 47508209 -115091721 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4321 167 39 40 chrX 47608865 47609843 -114990087 - L1P LINE L1 -4880 1266 290 7127 46 0 2 chrX 47609975 47610957 -114988973 - L1P LINE L1 -3767 2379 1400 1918 149 55 3 chrX 47611489 47611851 -114988079 + MLT1B LTR MaLR 8 388 -2 1039 47 7 0 chrX 47611999 47612149 -114987781 + L1P2 LINE L1 5311 5461 -694 1272 126 10 5 chrX 47612548 47612747 -114987183 + AluSx SINE Alu 1 200 -112 22 35 0 0 chrX 47612747 47612776 -114987154 + AT_rich Low_complexity Low_complexity 1 29 0 231 190 7 102 chrX 47612939 47613076 -114986854 + C-rich Low_complexity Low_complexity 2 125 0 217 189 0 38 chrX 47613218 47613271 -114986659 + C-rich Low_complexity Low_complexity 3 53 0 429 298 33 56 chrX 47613873 47614075 -114985855 - L1ME3 LINE L1 0 6166 5963 1995 246 33 35 chrX 47614551 47615158 -114984772 - L1MEc LINE L1 -5749 647 42 297 242 30 45 chrX 47615162 47615294 -114984636 + LTR16B LTR ERVL 200 329 -135 214 143 0 36 chrX 47615495 47615551 -114984379 + (CCCCCT)n Simple_repeat Simple_repeat 2 55 0 251 324 0 28 chrX 47615552 47615660 -114984270 + CT-rich Low_complexity Low_complexity 2 106 0 * 344 320 0 33 chrX 47615599 47615804 -114984126 + C-rich Low_complexity Low_complexity 1 198 0 431 261 72 20 chrX 47616385 47616634 -114983296 + L1M4 LINE L1 4612 4873 -1273 1095 101 16 79 chrX 47618945 47619080 -114980850 + AluSx SINE Alu 2 123 -189 1893 136 3 23 chrX 47619080 47619388 -114980542 + AluSx SINE Alu 1 302 -10 1095 101 16 79 chrX 47619388 47619441 -114980489 + AluSx SINE Alu 123 178 -134 203 208 19 19 chrX 47619500 47619553 -114980377 + CT-rich Low_complexity Low_complexity 1 53 0 185 226 12 0 chrX 47619605 47619689 -114980241 + C-rich Low_complexity Low_complexity 3 87 0 1331 279 51 42 chrX 47619791 47620186 -114979744 + L1MEc LINE L1 1000 1390 -5006 2417 70 3 10 chrX 47620186 47620500 -114979430 - AluSp SINE Alu 0 313 2 1331 279 51 42 chrX 47620500 47620915 -114979015 + L1MEc LINE L1 1390 1817 -4579 225 219 0 0 chrX 47622573 47622646 -114977284 + G-rich Low_complexity Low_complexity 1 73 0 1655 21 0 0 chrX 47623900 47624086 -114975844 + L1PA3 LINE L1 5970 6155 0 596 193 67 1 chrX 47624088 47624238 -114975692 - L1MC3 LINE L1 -144 7678 7493 670 276 4 70 chrX 47624246 47624489 -114975441 + L2 LINE L2 3086 3312 -1 194 321 0 0 chrX 47624638 47624691 -114975239 + L2 LINE L2 2417 2469 -845 2215 85 20 0 chrX 47625569 47625875 -114974055 + AluSx SINE Alu 1 312 0 426 163 20 0 chrX 47626186 47626284 -114973646 + MER113 DNA MER1_type? 110 209 -312 210 379 98 21 chrX 47626763 47626998 -114972932 + L2 LINE L2 2934 3186 -86 1798 134 10 17 chrX 47627331 47627622 -114972308 - AluSx SINE Alu -9 303 15 1538 209 0 13 chrX 47627632 47627933 -114971997 - AluJb SINE Alu -15 297 1 253 175 18 18 chrX 47628021 47628078 -114971852 + MLT1I LTR MaLR 353 409 0 1798 133 207 13 chrX 47628626 47629003 -114970927 - LTR7 LTR ERV1 0 450 1 1870 132 43 0 chrX 47629017 47629343 -114970587 + LTR10A LTR ERV1 208 547 -62 489 134 24 0 chrX 47629362 47629444 -114970486 + Alu SINE Alu 228 311 0 1349 130 5 10 chrX 47629448 47629656 -114970274 + AluSx SINE Alu 1 207 -105 639 87 10 19 chrX 47629658 47629761 -114970169 - LTR7 LTR ERV1 0 450 349 1254 110 42 30 chrX 47629866 47630103 -114969827 + AluY SINE Alu 55 294 -17 1747 122 3 91 chrX 47630478 47630798 -114969132 - AluSx SINE Alu -20 292 1 309 131 0 0 chrX 47630800 47630861 -114969069 - AluSp/q SINE Alu 0 303 243 5950 79 2 2 chrX 47630965 47631884 -114968046 + L1P LINE L1 2334 3252 -2894 204 172 0 69 chrX 47631938 47631996 -114967934 + C-rich Low_complexity Low_complexity 3 56 0 184 283 19 0 chrX 47632570 47632623 -114967307 - MIR SINE MIR -98 164 111 327 241 18 9 chrX 47633257 47633369 -114966561 + G-rich Low_complexity Low_complexity 2 114 0 377 270 0 36 chrX 47633496 47633607 -114966323 + L2 LINE L2 2223 2329 -985 553 289 3 111 chrX 47633907 47634222 -114965708 + L2 LINE L2 2217 2497 -817 559 257 35 51 chrX 47634222 47634479 -114965451 - L1MEc LINE L1 -5984 412 160 340 323 0 0 chrX 47634616 47634746 -114965184 + C-rich Low_complexity Low_complexity 1 130 0 549 164 0 39 chrX 47636259 47636363 -114963567 - AluSc SINE Alu -72 237 138 1759 123 23 52 chrX 47636363 47636673 -114963257 - AluSq SINE Alu -12 301 1 1910 127 24 3 chrX 47638264 47638556 -114961374 + AluSx SINE Alu 1 298 -14 560 239 0 0 chrX 47638562 47638679 -114961251 + FLAM_C SINE Alu 3 119 -24 257 303 73 28 chrX 47639119 47639228 -114960702 - L2 LINE L2 -204 3068 2955 469 374 5 0 chrX 47639248 47639451 -114960479 + LTR16B LTR ERVL 9 212 -252 1649 214 77 8 chrX 47639452 47639972 -114959958 - L1MEc LINE L1 -4189 2207 1652 2040 103 7 40 chrX 47640072 47640372 -114959558 - AluSx SINE Alu -22 290 1 299 275 25 17 chrX 47641287 47641407 -114958523 - MER66-int LTR ERV1 -6339 337 217 2176 111 3 16 chrX 47641501 47641808 -114958122 - AluSc SINE Alu -6 303 1 976 124 0 28 chrX 47641809 47641954 -114957976 - FLAM_C SINE Alu -2 141 1 1056 184 31 65 chrX 47641954 47642375 -114957555 + MER66-int LTR ERV1 653 1114 -5562 1496 118 0 0 chrX 47642375 47642570 -114957360 - AluSc SINE Alu -17 292 98 1045 160 0 11 chrX 47642708 47642889 -114957041 + AluSg/x SINE Alu 114 292 -20 2273 86 7 0 chrX 47642896 47643188 -114956742 + AluY SINE Alu 1 294 -17 1651 144 28 21 chrX 47644449 47644740 -114955190 - AluSx SINE Alu -19 293 1 314 211 53 0 chrX 47644743 47644819 -114955111 - AluJ/FRAM SINE Alu 0 302 223 1391 174 20 8 chrX 47645061 47645314 -114954616 + 7SLRNA srpRNA srpRNA 1 256 -64 245 287 57 0 chrX 47647044 47647166 -114952764 + MER74B LTR ERVL 211 339 -283 2287 94 7 7 chrX 47647174 47647481 -114952449 - AluY SINE Alu -4 307 1 664 193 0 14 chrX 47647496 47647641 -114952289 - AluSq SINE Alu -31 282 140 350 333 0 0 chrX 47647649 47647811 -114952119 + C-rich Low_complexity Low_complexity 1 162 0 4211 126 7 5 chrX 47647911 47649035 -114950895 - L1MA2 LINE L1 -452 5852 4730 253 313 7 35 chrX 47649286 47649430 -114950500 + GA-rich Low_complexity Low_complexity 1 140 0 6709 52 4 2 chrX 47649940 47650772 -114949158 + L1PA2 LINE L1 5322 6154 -1 1740 185 0 0 chrX 47650772 47651091 -114948839 + L1M4 LINE L1 3979 4297 -1849 257 327 115 0 chrX 47651729 47651894 -114948036 + MIR SINE MIR 50 233 -29 256 26 77 0 chrX 47651927 47651966 -114947964 - L1MA6 LINE L1 -6 6294 6253 822 157 324 0 chrX 47652801 47653011 -114946919 + AluJb SINE Alu 18 295 -17 478 314 78 29 chrX 47653017 47653259 -114946671 + L1M4 LINE L1 4457 4710 -1436 758 224 0 8 chrX 47653262 47653396 -114946534 + FLAM_A SINE Alu 1 133 0 710 229 65 36 chrX 47653683 47653989 -114945941 + L1MC4 LINE L1 7728 8042 0 217 170 19 19 chrX 47654147 47654200 -114945730 + G-rich Low_complexity Low_complexity 6 58 0 303 130 39 13 chrX 47655290 47655367 -114944563 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 3243 210 42 16 chrX 47655675 47656642 -114943288 - L1ME1 LINE L1 -108 6058 5076 972 183 6 6 chrX 47656644 47656824 -114943106 - MLT1C LTR MaLR -2 465 286 420 20 0 0 chrX 47657996 47658045 -114941885 + (TAG)n Simple_repeat Simple_repeat 2 50 0 2501 97 24 11 chrX 47658987 47659367 -114940563 - LTR1 LTR ERV1 0 785 401 3117 81 27 7 chrX 47659368 47659813 -114940117 + MER11B LTR ERVK 1 454 -782 274 249 85 24 chrX 47659951 47660166 -114939764 + (TGAG)n Simple_repeat Simple_repeat 1 228 0 2217 91 7 3 chrX 47660247 47660544 -114939386 - AluY SINE Alu -10 301 4 1166 195 13 89 chrX 47660548 47660851 -114939079 - AluJb SINE Alu -12 300 21 352 280 21 0 chrX 47662130 47662223 -114937707 - L2 LINE L2 -1 3312 3218 874 191 72 29 chrX 47662318 47662595 -114937335 - L1MD3 LINE L1 0 7995 7707 709 297 19 19 chrX 47662593 47662849 -114937081 - L1MC4a LINE L1 -1048 6760 6505 * 1648 153 40 58 chrX 47664893 47665240 -114934690 + MSTA LTR MaLR 2 342 -86 3939 95 4 24 chrX 47665442 47665922 -114934008 + MER1A DNA MER1_type 4 473 -2227 2288 98 3 0 chrX 47665922 47666217 -114933713 + AluSg SINE Alu 1 296 -14 3939 95 4 24 chrX 47666217 47666271 -114933659 + MER1A DNA MER1_type 473 527 0 273 236 132 42 chrX 47666304 47666448 -114933482 + L1MCb LINE L1 214 370 -5675 10640 62 6 1 chrX 47669828 47671259 -114928671 + L1P LINE L1 803 2239 -3907 363 333 11 11 chrX 47671623 47671797 -114928133 + (TG)n Simple_repeat Simple_repeat 2 175 0 410 328 11 11 chrX 47671824 47672001 -114927929 + (TG)n Simple_repeat Simple_repeat 1 177 0 319 259 0 32 chrX 47672056 47672241 -114927689 + (TG)n Simple_repeat Simple_repeat 1 179 0 194 284 0 9 chrX 47672301 47672417 -114927513 + (TG)n Simple_repeat Simple_repeat 1 115 0 26 50 0 0 chrX 47672636 47672676 -114927254 + GC_rich Low_complexity Low_complexity 1 40 0 3031 161 6 7 chrX 47672834 47673375 -114926555 - L1P LINE L1 -5606 540 1 286 271 45 68 chrX 47673937 47674070 -114925860 + L2 LINE L2 3134 3263 -9 195 42 0 0 chrX 47674073 47674097 -114925833 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 278 215 168 19 chrX 47674320 47674427 -114925503 + MIR SINE MIR 84 206 -56 23 33 0 0 chrX 47674567 47674597 -114925333 + AT_rich Low_complexity Low_complexity 1 30 0 292 283 13 150 chrX 47674954 47675187 -114924743 - MIR SINE MIR -13 249 49 221 271 160 21 chrX 47675193 47675337 -114924593 + MIR SINE MIR 94 257 -5 240 266 18 9 chrX 47675521 47675630 -114924300 + L1ME3 LINE L1 5962 6071 -91 184 289 89 52 chrX 47675725 47675860 -114924070 + MIR SINE MIR 112 251 -11 766 273 28 52 chrX 47676054 47676626 -114923304 + L1ME LINE L1 5010 5569 -593 4947 41 0 0 chrX 47676658 47677295 -114922635 + L1P LINE L1 4767 5403 -743 3413 77 25 0 chrX 47677837 47678279 -114921651 - MLT2A2 LTR ERVL 0 453 1 1333 135 0 5 chrX 47678804 47678997 -114920933 + AluSg/x SINE Alu 100 291 -21 181 200 147 21 chrX 47679436 47679531 -114920399 + L2 LINE L2 3133 3239 -33 186 267 0 0 chrX 47680608 47680698 -114919232 + C-rich Low_complexity Low_complexity 1 90 0 204 278 28 56 chrX 47681188 47681368 -114918562 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 469 265 22 33 chrX 47681383 47681564 -114918366 + (CTCA)n Simple_repeat Simple_repeat 1 179 0 342 316 12 0 chrX 47681506 47681674 -114918256 + (CA)n Simple_repeat Simple_repeat 1 170 0 * 447 260 40 29 chrX 47681616 47681789 -114918141 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 1805 213 47 9 chrX 47684189 47684640 -114915290 - MER110A LTR ERV1 0 468 1 279 0 0 0 chrX 47684748 47684779 -114915151 + (TG)n Simple_repeat Simple_repeat 2 32 0 1475 93 0 18 chrX 47684790 47685016 -114914914 - L1MA5 LINE L1 -11 6289 6068 1349 107 10 10 chrX 47686338 47686534 -114913396 - AluSq SINE Alu -117 196 1 7403 65 17 2 chrX 47687559 47689034 -114910896 - L1P LINE L1 -2545 3601 1927 399 259 59 7 chrX 47689624 47689759 -114910171 - L1ME4a LINE L1 -11 6110 5969 313 282 153 24 chrX 47690131 47690301 -114909629 - L1ME4a LINE L1 -135 5986 5795 311 281 106 19 chrX 47690427 47690587 -114909343 + MIR SINE MIR 88 261 -1 538 67 11 11 chrX 47691847 47691936 -114907994 + (CA)n Simple_repeat Simple_repeat 2 90 0 9584 54 1 4 chrX 47692352 47693583 -114906347 - L1P LINE L1 -4019 2127 901 3316 258 44 10 chrX 47693701 47694709 -114905221 - L1M4 LINE L1 -1680 4466 3425 668 172 0 47 chrX 47694982 47695110 -114904820 - AluSq/x SINE Alu -189 123 2 2368 57 0 3 chrX 47695124 47695420 -114904510 - AluY SINE Alu -16 295 1 1874 109 4 0 chrX 47695471 47695738 -114904192 - AluY SINE Alu -16 295 28 1767 125 50 0 chrX 47695959 47696239 -114903691 - AluSg SINE Alu -16 294 1 885 183 24 33 chrX 47696244 47696457 -114903473 - AluJo SINE Alu -16 296 86 348 344 32 85 chrX 47696655 47697030 -114902900 - L2 LINE L2 -52 3220 2866 282 189 0 0 chrX 47697203 47697256 -114902674 - L1MC4a LINE L1 -228 7580 7528 * 701 106 0 29 chrX 47697237 47697341 -114902589 - L1MC3 LINE L1 -989 6796 6696 6523 73 13 4 chrX 47698633 47699910 -114900020 - L1PA7 LINE L1 -15 6139 4870 195 42 0 0 chrX 47700199 47700223 -114899707 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 457 16 32 0 chrX 47700452 47700484 -114899446 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 457 16 32 0 chrX 47700484 47700546 -114899384 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 463 325 50 28 chrX 47701840 47702298 -114897632 + L1ME3A LINE L1 3176 3643 -2503 503 304 52 52 chrX 47702300 47702724 -114897206 + L1ME3A LINE L1 3663 4086 -2060 828 274 56 81 chrX 47702805 47703309 -114896621 + L1ME3A LINE L1 5657 6147 -23 516 16 0 0 chrX 47703745 47703806 -114896124 + (CA)n Simple_repeat Simple_repeat 1 61 0 891 134 0 0 chrX 47703928 47704077 -114895853 - L1MA9 LINE L1 -5 6307 6159 969 183 20 10 chrX 47704085 47704282 -114895648 - L1PA16 LINE L1 -23 6143 5945 598 209 22 30 chrX 47704284 47704418 -114895512 - FLAM_A SINE Alu 0 133 1 2737 158 25 16 chrX 47704419 47704799 -114895131 - L1MA9 LINE L1 -140 6172 5784 306 73 0 0 chrX 47704799 47704840 -114895090 + (TG)n Simple_repeat Simple_repeat 2 42 0 2737 158 25 16 chrX 47704840 47704971 -114894959 - L1MA9 LINE L1 -528 5784 5656 6728 69 11 17 chrX 47705072 47705947 -114893983 - Harlequin LTR ERV1 -2675 4221 3352 3907 43 2 6 chrX 47705946 47706476 -114893454 - Harlequin LTR ERV1 -4322 2574 2047 * 778 35 53 0 chrX 47706484 47706597 -114893333 + AluY SINE Alu 2 120 -191 1214 148 157 0 chrX 47706914 47707150 -114892780 - AluJb SINE Alu -19 293 21 5995 50 3 0 chrX 47707268 47707990 -114891940 + LTR5 LTR ERVK 1 724 -245 504 103 51 0 chrX 47708092 47708170 -114891760 - AluS SINE Alu -230 83 2 2006 104 3 10 chrX 47708177 47708350 -114891580 - AluSq SINE Alu -6 307 135 2388 44 7 3 chrX 47708350 47708646 -114891284 - AluY SINE Alu -14 297 1 2006 104 3 10 chrX 47708646 47708761 -114891169 - AluSq SINE Alu -178 135 21 832 221 6 0 chrX 47708898 47709056 -114890874 - AluJb SINE Alu -16 296 138 700 188 42 55 chrX 47709061 47709179 -114890751 + MER20 DNA MER1_type 57 174 -45 1384 186 24 20 chrX 47709179 47709474 -114890456 + AluJo SINE Alu 1 296 -16 700 188 42 55 chrX 47709474 47709520 -114890410 + MER20 DNA MER1_type 174 219 0 306 124 101 0 chrX 47709786 47709875 -114890055 + L1M LINE L1 5300 5397 -903 4840 191 35 44 chrX 47709884 47711424 -114888506 - MER52A LTR ERV1 0 1755 532 619 266 0 0 chrX 47711413 47711541 -114888389 - MER52A LTR ERV1 -1627 128 1 * 2369 131 16 0 chrX 47711542 47711916 -114888014 + L1M1 LINE L1 5406 5785 -515 3450 158 78 240 chrX 47712540 47713688 -114886242 + MER52A LTR ERV1 59 1105 -192 1782 139 17 0 chrX 47714830 47715117 -114884813 + AluSc SINE Alu 1 292 -17 290 196 18 0 chrX 47715334 47715390 -114884540 - MLT1I LTR MaLR 0 409 353 687 265 0 0 chrX 47715488 47715654 -114884276 + AluJb SINE Alu 9 174 -138 2346 183 8 55 chrX 47716056 47716586 -114883344 + L1MA10 LINE L1 5819 6323 -11 1040 248 100 22 chrX 47716607 47717095 -114882835 + L1M4 LINE L1 2415 2940 -3206 515 294 120 15 chrX 47717110 47717674 -114882256 + L1M4 LINE L1 3035 3660 -2486 249 290 46 15 chrX 47717675 47717806 -114882124 + L1M4 LINE L1 3816 3950 -2196 1677 216 59 11 chrX 47717870 47718064 -114881866 - L1MD3 LINE L1 -2 7993 7810 4435 136 19 6 chrX 47718064 47718762 -114881168 - MER39 LTR ERV1 0 707 1 1677 216 59 11 chrX 47718762 47719011 -114880919 - L1MD3 LINE L1 -185 7810 7529 369 223 32 21 chrX 47719016 47719110 -114880820 + MLT1F1 LTR MaLR 40 134 -433 412 121 0 0 chrX 47719110 47719176 -114880754 + L1MD3 LINE L1 7414 7479 -516 813 225 84 16 chrX 47719234 47719425 -114880505 + MER21B LTR ERV1 657 860 -3 1810 261 63 10 chrX 47719439 47720022 -114879908 - L1MEc LINE L1 -3355 2860 2247 2237 143 3 34 chrX 47720023 47720408 -114879522 - L1PB4 LINE L1 -2 6154 5782 466 178 11 0 chrX 47720766 47720856 -114879074 - L1PB4 LINE L1 -959 5187 5097 * 2220 273 52 32 chrX 47720855 47721923 -114878007 - L1MEc LINE L1 -4098 2298 1210 1454 196 84 21 chrX 47722027 47722409 -114877521 - L1PB4 LINE L1 -1800 4346 3941 1765 113 4 0 chrX 47722412 47722669 -114877261 + AluSp SINE Alu 49 306 -7 1690 109 60 25 chrX 47722670 47722955 -114876975 + AluY SINE Alu 1 295 -16 1762 260 71 42 chrX 47723622 47724626 -114875304 - L1ME3A LINE L1 -11 6159 5127 1164 353 50 35 chrX 47724699 47725651 -114874279 + L1MB1 LINE L1 2756 3722 -2424 12312 44 0 1 chrX 47725784 47727276 -114872654 - L1P LINE L1 -1341 4805 3315 205 284 40 47 chrX 47730031 47730179 -114869751 + (CGTG)n Simple_repeat Simple_repeat 4 150 0 2443 221 7 101 chrX 47731744 47732634 -114867296 + L1MB1 LINE L1 3718 4523 -1623 2324 204 45 5 chrX 47732639 47733193 -114866737 + L1MB1 LINE L1 5257 5832 -336 3860 181 43 18 chrX 47733197 47733937 -114865993 + L1M1 LINE L1 16 774 -6791 216 167 42 21 chrX 47735082 47735130 -114864800 - L3 LINE CR1 -917 660 612 1573 156 181 11 chrX 47736800 47736835 -114863095 - MLT2D LTR ERVL 0 414 386 324 0 0 0 chrX 47736835 47736871 -114863059 + (TG)n Simple_repeat Simple_repeat 2 37 0 1573 156 181 11 chrX 47736871 47737188 -114862742 - MLT2D LTR ERVL -28 386 2 3105 216 43 1 chrX 47738081 47739298 -114860632 + L1MCa LINE L1 1864 3134 -3292 260 204 0 0 chrX 47739412 47739466 -114860464 + LTR10A LTR ERV1 556 609 0 428 71 57 43 chrX 47739466 47739536 -114860394 + Alu SINE Alu 222 292 -19 951 70 0 8 chrX 47739538 47739666 -114860264 + FLAM_C SINE Alu 1 127 -16 1578 179 26 23 chrX 47739758 47739926 -114860004 - AluSx SINE Alu -3 309 138 2216 112 3 0 chrX 47739926 47740222 -114859708 - AluSq SINE Alu -14 299 3 1578 179 26 23 chrX 47740222 47740361 -114859569 - AluSx SINE Alu -174 138 1 1474 95 43 9 chrX 47740371 47740582 -114859348 - AluSq SINE Alu -15 298 81 336 267 0 11 chrX 47741301 47741391 -114858539 - MER117 DNA MER1_type -108 89 1 183 311 19 29 chrX 47741624 47741727 -114858203 - L2 LINE L2 -2071 1243 1142 663 228 68 6 chrX 47742431 47742593 -114857337 - MER45A DNA AcHobo -3 175 4 441 0 0 0 chrX 47742726 47742775 -114857155 + (CA)n Simple_repeat Simple_repeat 2 50 0 929 88 0 0 chrX 47742898 47743023 -114856907 - L1P LINE L1 -6021 125 1 * 3011 182 4 13 chrX 47743021 47743259 -114856671 - L1M2 LINE L1 -703 5609 5370 2147 122 0 3 chrX 47743259 47743555 -114856375 - AluY SINE Alu -16 295 1 3011 182 4 13 chrX 47743555 47744216 -114855714 - L1M2 LINE L1 -942 5370 4713 3205 155 34 12 chrX 47744220 47744896 -114855034 - L1M2 LINE L1 -1544 4602 3912 2261 153 22 136 chrX 47744896 47745530 -114854400 + L1MA8 LINE L1 5449 6010 -281 1131 197 72 12 chrX 47745703 47746023 -114853907 - L1M2 LINE L1 -2298 3848 3510 308 169 31 15 chrX 47746024 47746089 -114853841 - L1MD3 LINE L1 -10 7985 7920 254 203 47 31 chrX 47746151 47746215 -114853715 - L1MC3 LINE L1 -225 7560 7496 1591 172 26 23 chrX 47748122 47748285 -114851645 - AluSx SINE Alu -8 304 138 2219 104 3 3 chrX 47748285 47748582 -114851348 - AluSq SINE Alu -14 299 3 1591 172 26 23 chrX 47748582 47748721 -114851209 - AluSx SINE Alu -174 138 1 1967 103 28 11 chrX 47748730 47749012 -114850918 - AluSg SINE Alu -10 300 14 1233 157 80 70 chrX 47749099 47749398 -114850532 + AluJo SINE Alu 1 302 -10 20468 39 8 0 chrX 47750276 47752969 -114846961 - L1P LINE L1 -2470 3676 962 5260 154 29 46 chrX 47753992 47755070 -114844860 + Tigger2 DNA MER2_type 2 1060 -1658 775 64 0 0 chrX 47755092 47755201 -114844729 - L1PA4 LINE L1 -930 5216 5108 5944 30 1 0 chrX 47755201 47755968 -114843962 + L1PA4 LINE L1 5217 5984 -171 2177 120 0 3 chrX 47756795 47757094 -114842836 + AluSp SINE Alu 1 298 -15 962 142 0 0 chrX 47757102 47757236 -114842694 + AluSq/x SINE Alu 2 135 -178 1853 159 3 0 chrX 47757236 47757532 -114842398 + AluSx SINE Alu 1 297 -15 1125 129 6 0 chrX 47757905 47758068 -114841862 - AluSc SINE Alu 0 309 146 300 175 35 0 chrX 47758768 47758825 -114841105 - AluSp/q SINE Alu -5 298 240 1453 84 0 0 chrX 47758826 47759005 -114840925 - AluY SINE Alu -132 179 1 702 220 122 98 chrX 47759039 47759134 -114840796 - MER66B LTR ERV1 0 486 395 729 213 6 52 chrX 47759134 47759308 -114840622 - FRAM SINE Alu 0 166 1 702 220 122 98 chrX 47759308 47759323 -114840607 - MER66B LTR ERV1 -91 395 382 2003 112 22 0 chrX 47759323 47759592 -114840338 - AluSx SINE Alu -37 275 1 702 220 122 98 chrX 47759592 47759817 -114840113 - MER66B LTR ERV1 -104 382 142 2177 217 60 18 chrX 47761020 47761414 -114838516 + L1 LINE L1 3828 4257 -1889 2512 83 0 13 chrX 47761414 47761728 -114838202 + AluY SINE Alu 2 311 0 2177 217 60 18 chrX 47761728 47761937 -114837993 + L1 LINE L1 4257 4456 -1690 665 242 55 0 chrX 47761937 47762102 -114837828 + FRAM SINE Alu 1 167 -9 316 235 52 17 chrX 47762126 47762241 -114837689 + L1 LINE L1 4566 4684 -1462 1988 140 0 7 chrX 47762254 47762546 -114837384 - AluSx SINE Alu -15 297 8 6287 54 24 6 chrX 47762546 47763383 -114836547 + LTR13 LTR ERVK 1 852 -155 1590 150 15 0 chrX 47763517 47763777 -114836153 - AluSp SINE Alu -49 264 1 2248 105 16 3 chrX 47763777 47764082 -114835848 - AluSp SINE Alu -4 309 1 2095 128 0 3 chrX 47764082 47764363 -114835567 - AluSx SINE Alu -18 294 14 703 142 55 8 chrX 47764368 47764495 -114835435 - FLAM_C SINE Alu 0 133 1 1209 161 0 5 chrX 47764801 47764932 -114834998 + AluSg SINE Alu 4 135 -175 2447 91 0 0 chrX 47764932 47765228 -114834702 + AluSg SINE Alu 2 297 -13 1209 161 0 5 chrX 47765228 47765289 -114834641 + AluSg SINE Alu 135 195 -115 2128 116 0 23 chrX 47765510 47765820 -114834110 - AluSc SINE Alu -6 303 1 2366 117 0 0 chrX 47765820 47766128 -114833802 - AluSx SINE Alu -4 308 1 2240 105 7 0 chrX 47766455 47766751 -114833179 - AluSx SINE Alu -14 298 1 945 142 19 0 chrX 47770985 47771140 -114828790 - AluSq SINE Alu -29 284 127 2067 123 10 0 chrX 47771209 47771511 -114828419 - AluSc SINE Alu -4 305 1 1499 196 181 5 chrX 47773558 47773957 -114825973 - MER66-int LTR ERV1 -4677 1999 1531 757 227 22 0 chrX 47774057 47774242 -114825688 + L1 LINE L1 2456 2644 -3502 4026 183 39 9 chrX 47774246 47775127 -114824803 + L1 LINE L1 3088 3994 -2152 14242 67 5 4 chrX 47775133 47777064 -114822866 + L1P LINE L1 13 1945 -4201 2253 116 3 0 chrX 47777861 47778163 -114821767 + AluSx SINE Alu 1 303 -9 2132 96 20 10 chrX 47778171 47778463 -114821467 + AluY SINE Alu 1 295 -16 2334 62 20 3 chrX 47779165 47779457 -114820473 - AluY SINE Alu -13 298 2 1461 186 69 9 chrX 47779772 47780106 -114819824 + Harlequin LTR ERV1 1378 1731 -4918 330 216 79 26 chrX 47780093 47780417 -114819513 + Harlequin LTR ERV1 860 1123 -5773 * 864 254 57 25 chrX 47780572 47781148 -114818782 - L1M4 LINE L1 -492 5686 5080 13392 188 10 3 chrX 47781149 47782333 -114817597 + L1PA14 LINE L1 2362 3537 -2624 254 50 25 0 chrX 47782333 47782373 -114817557 + (CAA)n Simple_repeat Simple_repeat 2 42 0 13392 188 10 3 chrX 47782373 47785021 -114814909 + L1PA14 LINE L1 3537 6160 -1 14076 141 13 5 chrX 47785201 47787782 -114812148 + Harlequin LTR ERV1 4281 6895 -1 2925 46 54 5 chrX 47787782 47788153 -114811777 + LTR2B LTR ERV1 1 389 -101 505 326 96 33 chrX 47788255 47788716 -114811214 - L1 LINE L1 -2839 4009 1737 518 266 106 18 chrX 47788842 47789060 -114810870 + MER63 DNA MER1_type 824 1060 0 1624 126 29 48 chrX 47789237 47789546 -114810384 - AluSx SINE Alu -8 304 2 903 76 0 0 chrX 47789547 47789665 -114810265 - AluSg/x SINE Alu -11 299 182 180 0 0 0 chrX 47790142 47790162 -114809768 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1555 112 43 0 chrX 47790176 47790408 -114809522 + AluSx SINE Alu 1 242 -70 926 94 16 0 chrX 47790486 47790614 -114809316 + AluJo SINE Alu 85 214 -98 268 71 71 0 chrX 47790616 47790658 -114809272 + FLAM SINE Alu 82 126 -7 2134 67 3 11 chrX 47790664 47790974 -114808956 + AluY SINE Alu 1 308 0 7911 58 2 0 chrX 47792319 47793334 -114806596 - L1P LINE L1 -2422 3724 2708 3990 151 35 0 chrX 47793435 47794069 -114805861 - Tigger2 DNA MER2_type -929 1789 1134 1809 151 10 3 chrX 47794081 47794386 -114805544 - AluSx SINE Alu 0 312 6 234 268 0 49 chrX 47794419 47794501 -114805429 + C-rich Low_complexity Low_complexity 1 78 0 390 341 0 0 chrX 47794524 47794697 -114805233 + C-rich Low_complexity Low_complexity 1 173 0 1636 143 4 8 chrX 47795121 47795379 -114804551 - AluSq SINE Alu -56 257 1 848 192 136 9 chrX 47795391 47795605 -114804325 - AluJb SINE Alu -26 286 46 1368 150 15 8 chrX 47795606 47795872 -114804058 + AluSg SINE Alu 6 273 -37 4700 72 2 6 chrX 47796023 47796650 -114803280 + L1P LINE L1 3722 4345 -1801 1503 181 31 16 chrX 47797345 47797665 -114802265 + L1M1 LINE L1 3237 3561 -4004 1134 151 6 6 chrX 47797667 47797846 -114802084 - THE1C LTR MaLR 0 375 197 2346 106 0 0 chrX 47797847 47798159 -114801771 + MER9 LTR ERVK 3 314 -197 229 367 0 0 chrX 47800430 47800569 -114799361 + C-rich Low_complexity Low_complexity 1 139 0 4028 34 2 0 chrX 47800669 47801139 -114798791 + L1PA5 LINE L1 5676 6146 -8 1582 173 7 0 chrX 47801311 47801606 -114798324 - AluJo SINE Alu -15 297 1 322 307 39 13 chrX 47801611 47801764 -114798166 - L1MA10 LINE L1 -9 6325 6169 320 256 40 32 chrX 47801768 47801893 -114798037 - L1ME1 LINE L1 -231 5935 5810 267 271 11 18 chrX 47802030 47802309 -114797621 + G-rich Low_complexity Low_complexity 1 276 0 8169 76 1 1 chrX 47803415 47804704 -114795226 - L1P2 LINE L1 -512 5643 4354 2204 112 0 6 chrX 47805266 47805578 -114794352 + AluSq SINE Alu 1 310 -3 310 263 0 17 chrX 47805644 47805762 -114794168 + FLAM_C SINE Alu 3 118 -15 496 322 0 0 chrX 47805821 47805995 -114793935 + C-rich Low_complexity Low_complexity 1 174 0 194 186 116 23 chrX 47806182 47806225 -114793705 - L2 LINE L2 -248 3065 3019 427 209 119 130 chrX 47806252 47806429 -114793501 - MER5B DNA MER1_type -3 175 1 586 286 55 35 chrX 47806434 47806689 -114793241 - L2 LINE L2 -339 2975 2716 652 208 37 12 chrX 47806701 47806889 -114793041 - L1MC4a LINE L1 -297 5824 5641 223 248 148 50 chrX 47807536 47807637 -114792293 + MIR SINE MIR 131 241 -21 1988 129 7 10 chrX 47809438 47809748 -114790182 - AluSx SINE Alu -3 309 1 182 333 0 39 chrX 47810107 47810185 -114789745 + L3 LINE CR1 1192 1266 -311 540 319 54 5 chrX 47810763 47810967 -114788963 - MIR SINE MIR -2 260 47 26 50 0 0 chrX 47811210 47811250 -114788680 + AT_rich Low_complexity Low_complexity 1 40 0 481 321 110 31 chrX 47811495 47811785 -114788145 + L1ME3 LINE L1 5636 5948 -214 24 0 0 0 chrX 47812023 47812047 -114787883 + AT_rich Low_complexity Low_complexity 1 24 0 508 334 74 38 chrX 47812726 47813118 -114786812 + L3 LINE CR1 1057 1462 -115 199 227 0 0 chrX 47813258 47813302 -114786628 - L3 LINE CR1 -6 1571 1528 401 300 162 29 chrX 47813480 47813506 -114786424 + MIR SINE MIR 3 24 -238 2235 103 3 0 chrX 47813506 47813817 -114786113 + AluSp SINE Alu 1 312 -1 401 300 162 29 chrX 47813817 47814000 -114785930 + MIR SINE MIR 24 240 -22 354 188 35 47 chrX 47814155 47814240 -114785690 + MER103 DNA DNA 67 150 -16 673 323 39 22 chrX 47814303 47814532 -114785398 - L3 LINE CR1 -1155 422 190 320 259 31 68 chrX 47815550 47815712 -114784218 + MIR3 SINE MIR 23 178 -30 213 333 117 17 chrX 47816442 47816562 -114783368 - MIR SINE MIR -21 241 110 240 111 0 0 chrX 47816726 47816762 -114783168 + (T)n Simple_repeat Simple_repeat 1 36 0 519 156 0 0 chrX 47816802 47816892 -114783038 - AluY SINE Alu -3 308 219 26 0 0 0 chrX 47817033 47817059 -114782871 + AT_rich Low_complexity Low_complexity 1 26 0 337 186 59 59 chrX 47817391 47817509 -114782421 + L2 LINE L2 2689 2806 -508 1991 97 31 66 chrX 47817736 47818055 -114781875 - AluSg SINE Alu -2 308 1 510 238 26 84 chrX 47818148 47818375 -114781555 + L1MC5 LINE L1 7226 7439 -522 833 242 49 24 chrX 47819298 47819585 -114780345 - MLT1L LTR MaLR 0 609 281 373 308 103 19 chrX 47820043 47820199 -114779731 + MIR SINE MIR 14 182 -80 1574 214 97 29 chrX 47820539 47821015 -114778915 - MER21B LTR ERV1 -56 807 276 1967 94 50 0 chrX 47821016 47821293 -114778637 - AluSx SINE Alu -21 291 1 937 135 9 2 chrX 47821396 47821554 -114778376 - L1PA16 LINE L1 -338 5828 5670 277 219 271 0 chrX 47821559 47821655 -114778275 - L2 LINE L2 -648 2666 2545 236 317 75 12 chrX 47822922 47823106 -114776824 - MIR SINE MIR -33 229 41 240 250 0 18 chrX 47823305 47823361 -114776569 + L2 LINE L2 3193 3247 -25 22 0 0 0 chrX 47823655 47823677 -114776253 + AT_rich Low_complexity Low_complexity 1 22 0 1824 225 16 50 chrX 47824862 47825021 -114774909 + HERVL68 LTR ERVL 1284 1447 -1590 836 140 0 29 chrX 47825021 47825157 -114774773 - FLAM_C SINE Alu 0 133 2 1824 225 16 50 chrX 47825157 47825481 -114774449 + HERVL68 LTR ERVL 1447 1751 -1286 292 133 33 0 chrX 47825492 47825552 -114774378 + CT-rich Low_complexity Low_complexity 2 63 0 1378 170 76 4 chrX 47825561 47825721 -114774209 - AluJo SINE Alu -14 298 151 324 0 0 0 chrX 47825721 47825757 -114774173 + (TG)n Simple_repeat Simple_repeat 2 37 0 1378 170 76 4 chrX 47825757 47825872 -114774058 - AluJo SINE Alu -161 151 3 1191 197 48 34 chrX 47825876 47825909 -114774021 + HERVL68 LTR ERVL 1740 1771 -1266 4335 114 25 8 chrX 47825909 47826551 -114773379 + MER39B LTR ERV1 1 653 0 1191 197 48 34 chrX 47826551 47826811 -114773119 + HERVL68 LTR ERVL 1771 2037 -1000 913 196 6 0 chrX 47826816 47826989 -114772941 + AluJb SINE Alu 137 310 -2 296 300 79 21 chrX 47827166 47827356 -114772574 + HERVL68 LTR ERVL 2218 2418 -619 376 222 14 140 chrX 47827562 47827636 -114772294 + MLT1B LTR MaLR 105 187 -203 2127 110 3 3 chrX 47827636 47827946 -114771984 + AluSx SINE Alu 1 310 -2 376 222 14 140 chrX 47827946 47827959 -114771971 + MLT1B LTR MaLR 187 200 -190 252 0 0 0 chrX 47827959 47827987 -114771943 + (TC)n Simple_repeat Simple_repeat 1 28 0 376 222 14 140 chrX 47827987 47828119 -114771811 + MLT1B LTR MaLR 200 297 -93 3264 225 52 30 chrX 47828219 47829065 -114770865 + HERVL68 LTR ERVL 2039 2903 -134 1821 187 31 8 chrX 47829065 47829418 -114770512 + MLT2D LTR ERVL 1 361 -53 255 103 0 0 chrX 47829423 47829462 -114770468 + (TC)n Simple_repeat Simple_repeat 2 40 0 396 0 0 0 chrX 47829462 47829506 -114770424 + (CA)n Simple_repeat Simple_repeat 2 45 0 471 139 14 0 chrX 47829532 47829604 -114770326 + HERVL68 LTR ERVL 2904 2976 -61 199 407 29 29 chrX 47829712 47829852 -114770078 - L2 LINE L2 -8 3264 3125 484 273 43 14 chrX 47830017 47830226 -114769704 - MER20B DNA MER1_type -287 496 282 253 206 151 0 chrX 47830247 47830320 -114769610 - MER20B DNA MER1_type -676 107 24 1603 225 45 26 chrX 47830788 47831295 -114768635 - L1MCc LINE L1 -1367 5574 5058 * 2356 243 84 65 chrX 47831294 47832471 -114767459 - L1MCc LINE L1 -2330 4611 3412 674 93 9 0 chrX 47832476 47832584 -114767346 + (TA)n Simple_repeat Simple_repeat 2 110 0 266 247 26 0 chrX 47832584 47832661 -114767269 - L1MCc LINE L1 -6328 95 17 315 305 11 11 chrX 47832730 47832825 -114767105 + MER58 DNA MER1_type 1 95 -120 791 281 96 14 chrX 47832859 47833222 -114766708 - L1MCc LINE L1 -3571 3370 2978 229 103 0 0 chrX 47833227 47833266 -114766664 - Alu SINE Alu -2 300 262 1008 261 20 45 chrX 47833278 47833631 -114766299 - L1MCc LINE L1 -6063 360 17 365 259 24 1 chrX 47833715 47833895 -114766035 + MER58 DNA MER1_type 16 2417 -3 1781 115 0 15 chrX 47834160 47834430 -114765500 + AluSx SINE Alu 39 304 -8 1243 193 106 90 chrX 47834436 47834923 -114765007 + MER66A LTR ERV1 106 478 0 1671 142 194 3 chrX 47834924 47835291 -114764639 - L1M2 LINE L1 -577 5735 5299 541 202 0 0 chrX 47835318 47835407 -114764523 - AluJb SINE Alu -75 237 149 306 221 143 14 chrX 47836324 47836459 -114763471 - L1ME4a LINE L1 0 6121 5968 380 140 0 43 chrX 47836459 47836552 -114763378 + L1MA7 LINE L1 6199 6287 -4 1569 182 48 0 chrX 47836681 47836972 -114762958 + AluJb SINE Alu 1 305 -7 208 257 0 14 chrX 47836978 47837048 -114762882 + A-rich Low_complexity Low_complexity 4 72 0 26 30 0 0 chrX 47837329 47837362 -114762568 + AT_rich Low_complexity Low_complexity 1 33 0 237 239 77 111 chrX 47838082 47838199 -114761731 + MER41A LTR ERV1 191 303 -251 * 1378 159 70 92 chrX 47838194 47838553 -114761377 + MER66A LTR ERV1 128 478 0 264 295 82 0 chrX 47839387 47839509 -114760421 + MER112 DNA MER1_type 124 255 -5 1839 137 65 0 chrX 47839634 47839926 -114760004 - AluSx SINE Alu -1 311 1 323 183 0 0 chrX 47840527 47840587 -114759343 - MSTB2 LTR MaLR -397 60 1 262 184 0 0 chrX 47840589 47840638 -114759292 - MLT1C LTR MaLR -272 195 147 2232 123 0 3 chrX 47841386 47841688 -114758242 + AluSx SINE Alu 1 301 -11 1502 208 65 25 chrX 47841852 47842311 -114757619 + MER110A LTR ERV1 26 482 -2 2759 107 8 3 chrX 47842385 47842758 -114757172 - THE1C LTR MaLR 0 375 1 1208 208 4 12 chrX 47842979 47843229 -114756701 + AluJo SINE Alu 45 292 -20 23 33 0 0 chrX 47843234 47843264 -114756666 + AT_rich Low_complexity Low_complexity 1 30 0 191 299 173 24 chrX 47846166 47846293 -114753637 - MIR SINE MIR -111 151 6 1528 193 3 33 chrX 47847126 47847432 -114752498 + AluJb SINE Alu 1 297 -15 2133 134 13 0 chrX 47849284 47849590 -114750340 - AluSx SINE Alu -2 310 1 2363 110 0 0 chrX 47850763 47851072 -114748858 - AluSc SINE Alu 0 309 1 1265 217 54 7 chrX 47851120 47851397 -114748533 + AluJo SINE Alu 1 290 -12 1789 187 158 13 chrX 47851442 47851827 -114748103 + MER21B LTR ERV1 1 441 -422 300 313 69 7 chrX 47852011 47852155 -114747775 + MIR SINE MIR 50 202 -60 29 0 0 0 chrX 47852331 47852360 -114747570 + AT_rich Low_complexity Low_complexity 1 29 0 856 318 75 25 chrX 47852625 47853115 -114746815 - REP3 LTR ERV -47 515 1 193 318 16 0 chrX 47853226 47853289 -114746641 - L2 LINE L2 -5 3308 3245 634 260 128 0 chrX 47853482 47853724 -114746206 - L1M4 LINE L1 -1235 4911 4639 501 300 186 6 chrX 47853751 47854078 -114745852 - L2 LINE L2 -1531 1783 1398 226 167 0 0 chrX 47854128 47854164 -114745766 + MLT1B LTR MaLR 1 36 -354 2253 156 10 10 chrX 47854202 47854587 -114745343 + MLT1B LTR MaLR 4 388 -2 239 222 74 0 chrX 47858211 47858265 -114741665 - MIR SINE MIR -111 151 94 8276 19 1 1 chrX 47858873 47860074 -114739856 + L1PA3 LINE L1 4955 6155 0 330 250 23 0 chrX 47860954 47861042 -114738888 - L1M4 LINE L1 -2462 3684 3595 252 0 0 0 chrX 47861115 47861143 -114738787 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 746 202 0 0 chrX 47861350 47861474 -114738456 - FLAM_C SINE Alu -9 124 1 1618 206 6 3 chrX 47862988 47863308 -114736622 + L1 LINE L1 4819 5139 -1007 843 235 54 64 chrX 47863322 47863621 -114736309 + L1MEc LINE L1 1987 2288 -3927 1417 160 113 0 chrX 47863621 47863877 -114736053 + AluJo SINE Alu 1 285 -27 843 235 54 64 chrX 47863877 47864291 -114735639 + L1MEc LINE L1 2288 2644 -3571 504 0 0 0 chrX 47864620 47864676 -114735254 + (TA)n Simple_repeat Simple_repeat 1 56 0 2517 169 11 55 chrX 47864678 47865222 -114734708 - LTR1 LTR ERV1 -265 520 1 453 36 0 0 chrX 47865337 47865392 -114734538 + (TA)n Simple_repeat Simple_repeat 1 55 0 503 247 52 26 chrX 47865392 47865586 -114734344 + L1M4 LINE L1 4286 4484 -1662 249 33 0 0 chrX 47865597 47865627 -114734303 + (TA)n Simple_repeat Simple_repeat 1 30 0 587 60 0 0 chrX 47865633 47865700 -114734230 - AluSg/x SINE Alu -30 280 214 1900 243 84 19 chrX 47865706 47866327 -114733603 + L1M4 LINE L1 4476 5136 -1010 182 172 0 0 chrX 47866490 47866519 -114733411 - MIR SINE MIR -72 190 162 504 299 25 30 chrX 47866709 47866910 -114733020 - MIR SINE MIR 0 262 63 198 339 50 41 chrX 47867267 47867388 -114732542 - MER5A DNA MER1_type 0 189 68 198 0 0 0 chrX 47868173 47868195 -114731735 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5245 99 16 4 chrX 47868209 47868946 -114730984 - L1PB1 LINE L1 -21 6846 6101 1558 16 11 37 chrX 47868946 47869133 -114730797 - L1PA4 LINE L1 -2 6153 5972 756 33 0 0 chrX 47869133 47869223 -114730707 + L1PA4 LINE L1 5855 5944 -210 * 15243 205 18 5 chrX 47869219 47870861 -114729069 - L1PB1 LINE L1 -748 6114 4495 1147 31 0 0 chrX 47870861 47870991 -114728939 - L1PA6 LINE L1 -3 6151 6022 15243 205 18 5 chrX 47870991 47872967 -114726963 - L1PB1 LINE L1 -2367 4495 2474 2488 174 11 2 chrX 47873067 47873537 -114726393 - L1PB1 LINE L1 -4970 1893 1420 3206 227 73 8 chrX 47873542 47874326 -114725604 - L1PB1 LINE L1 -5998 865 31 888 184 68 24 chrX 47874332 47874539 -114725391 - AluJo SINE Alu -13 299 84 237 246 55 36 chrX 47874762 47874872 -114725058 + MER20B DNA MER1_type 27 138 -645 * 458 296 41 10 chrX 47874869 47875065 -114724865 + MER20B DNA MER1_type 290 491 -292 216 0 0 0 chrX 47875596 47875620 -114724310 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1438 240 0 20 chrX 47875620 47875978 -114723952 - MLT2D LTR ERVL -63 351 1 2230 209 30 27 chrX 47875988 47876549 -114723381 - HERVL68-D LTR ERVL -144 2893 2331 312 345 47 0 chrX 47877188 47877336 -114722594 - MIR SINE MIR -62 200 46 21 0 0 0 chrX 47878005 47878026 -114721904 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chrX 47878133 47878158 -114721772 + AT_rich Low_complexity Low_complexity 1 25 0 245 218 11 58 chrX 47878351 47878438 -114721492 + MIR SINE MIR 180 262 0 755 161 16 16 chrX 47878549 47878673 -114721257 + FLAM_C SINE Alu 1 124 -9 332 235 25 0 chrX 47878956 47879037 -114720893 + L1M4 LINE L1 3595 3677 -2469 1525 161 7 179 chrX 47879042 47879484 -114720446 + MER47A DNA MER2_type 1 366 0 1219 264 70 37 chrX 47879484 47880113 -114719817 + L1M4 LINE L1 3681 4330 -1816 3753 190 102 19 chrX 47880118 47880904 -114719026 - MER21B LTR ERV1 -12 851 1 1489 151 180 65 chrX 47880906 47881290 -114718640 - MSTA LTR MaLR 0 428 1 1178 213 18 15 chrX 47881375 47881647 -114718283 - AluJo SINE Alu -39 273 1 295 319 0 0 chrX 47882406 47882497 -114717433 - MER94 DNA DNA -39 95 5 1541 98 0 0 chrX 47883393 47883587 -114716343 - AluSx SINE Alu -118 194 1 1256 202 4 0 chrX 47887179 47887412 -114712518 - AluJo SINE Alu -34 278 45 1501 219 50 48 chrX 47887700 47888179 -114711751 - MER110A LTR ERV1 -2 466 19 2329 91 0 3 chrX 47889552 47889848 -114710082 - AluSc SINE Alu -14 295 1 271 292 83 0 chrX 47889907 47890027 -114709903 - MER112 DNA MER1_type -7 253 124 2781 133 0 23 chrX 47890833 47891262 -114708668 - L1PA11 LINE L1 -8 6166 5748 431 197 163 14 chrX 47891440 47891587 -114708343 - L1M4 LINE L1 -1227 4919 4751 183 100 0 0 chrX 47891632 47891662 -114708268 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 445 252 7 7 chrX 47891873 47892008 -114707922 - L2 LINE L2 -1655 1659 1525 287 133 0 0 chrX 47892037 47892082 -114707848 + MER77 LTR ERV1 561 605 0 759 296 43 72 chrX 47892130 47892585 -114707345 + HERVL68-D LTR ERVL 6 522 -2515 1544 183 29 0 chrX 47892585 47892864 -114707066 + AluJo SINE Alu 1 287 -25 759 296 43 72 chrX 47892864 47893096 -114706834 + HERVL68-D LTR ERVL 522 759 -2278 1648 233 59 33 chrX 47893114 47893625 -114706305 + HERVL68-D LTR ERVL 1834 2357 -680 543 192 0 0 chrX 47893807 47893906 -114706024 + FLAM_C SINE Alu 45 143 0 903 173 26 0 chrX 47893923 47894079 -114705851 + FRAM SINE Alu 1 154 -22 2018 104 35 3 chrX 47894221 47894510 -114705420 + AluSx SINE Alu 1 298 -14 1420 177 0 4 chrX 47894950 47895193 -114704737 - AluJb SINE Alu 0 312 71 291 191 0 0 chrX 47896964 47897027 -114702903 + (CA)n Simple_repeat Simple_repeat 1 63 0 1796 117 25 25 chrX 47897614 47897934 -114701996 + AluSx SINE Alu 1 320 0 1574 209 37 27 chrX 47898829 47899230 -114700700 + HERVL68-D LTR ERVL 2489 2893 -144 1452 224 8 20 chrX 47899240 47899597 -114700333 + MLT2D LTR ERVL 1 353 -61 180 0 0 0 chrX 47899608 47899628 -114700302 + (TC)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chrX 47899628 47899649 -114700281 + (CA)n Simple_repeat Simple_repeat 1 21 0 428 100 17 0 chrX 47899685 47899745 -114700185 + HERVL68 LTR ERVL 2912 2972 -65 410 284 50 15 chrX 47900150 47900351 -114699579 - MER20B DNA MER1_type -286 497 290 268 243 29 0 chrX 47900380 47900450 -114699480 - MER20B DNA MER1_type -676 107 36 998 234 89 0 chrX 47900667 47900924 -114699006 + AluJb SINE Alu 6 285 -27 533 297 26 5 chrX 47901036 47901231 -114698699 - MER20B DNA MER1_type -294 489 291 823 201 72 14 chrX 47901569 47901778 -114698152 + AluJo SINE Alu 85 305 -7 489 309 10 29 chrX 47903027 47903231 -114696699 + MIR SINE MIR 63 262 0 2452 250 60 14 chrX 47903612 47904440 -114695490 - L1M4 LINE L1 -1008 5138 4273 1274 299 25 48 chrX 47904455 47905218 -114694712 - L1M4 LINE L1 -2330 3816 3072 778 132 15 37 chrX 47905218 47905354 -114694576 - AluSg/x SINE Alu 0 312 180 2340 105 0 0 chrX 47905369 47905673 -114694257 - AluSg SINE Alu -6 304 1 1958 221 68 30 chrX 47905678 47906271 -114693659 - L1M4 LINE L1 -3059 3087 2473 387 244 12 0 chrX 47906313 47906395 -114693535 - AluJb SINE Alu -175 127 45 1840 227 48 35 chrX 47906578 47907093 -114692837 - HERVL68-A1 LTR ERVL -680 2357 1836 703 302 58 61 chrX 47907098 47907344 -114692586 - HERVL68-A1 LTR ERVL -2262 775 530 1472 220 3 0 chrX 47907344 47907630 -114692300 - AluJo SINE Alu -25 287 1 703 302 58 61 chrX 47907630 47908069 -114691861 - HERVL68-A1 LTR ERVL -2507 530 9 301 209 116 0 chrX 47908630 47908716 -114691214 - L1M4 LINE L1 -1667 4479 4384 789 232 15 50 chrX 47908721 47908919 -114691011 + AluJo SINE Alu 2 192 -120 279 194 42 28 chrX 47908937 47909009 -114690921 + FRAM/FAM SINE Alu 18 90 -85 1847 201 131 16 chrX 47909098 47909513 -114690417 + MER21B LTR ERV1 1 554 -377 315 294 118 6 chrX 47909652 47909822 -114690108 + MIR SINE MIR 12 200 -62 263 317 30 12 chrX 47909931 47910098 -114689832 - MER113 DNA MER1_type? -341 180 11 230 312 96 55 chrX 47910299 47910517 -114689413 - REP3 LTR ERV -47 515 289 525 283 266 12 chrX 47910628 47911129 -114688801 - L2 LINE L2 -1535 1779 1152 2436 143 8 15 chrX 47911228 47911619 -114688311 - MLT1B LTR MaLR -2 388 1 1363 204 0 33 chrX 47911648 47911952 -114687978 - AluJo SINE Alu -18 294 1 877 199 14 1 chrX 47912213 47912395 -114687535 + L1 LINE L1 4797 4982 -1164 339 301 41 14 chrX 47912398 47912544 -114687386 + MER20B DNA MER1_type 342 491 -292 418 63 63 0 chrX 47912948 47913011 -114686919 - L1MA7 LINE L1 -7 6284 6218 279 241 139 15 chrX 47913033 47913170 -114686760 + L1ME4a LINE L1 5968 6121 0 324 98 39 0 chrX 47913282 47913333 -114686597 - MLT2A1 LTR ERVL -2 442 390 329 204 0 11 chrX 47913342 47913430 -114686500 + (TA)n Simple_repeat Simple_repeat 2 88 0 2956 86 10 5 chrX 47913430 47913824 -114686106 - MLT2A1 LTR ERVL -40 404 9 881 118 7 7 chrX 47914574 47914709 -114685221 - L1MA3 LINE L1 0 6305 6171 1983 129 13 26 chrX 47914737 47915047 -114684883 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 47915149 47915177 -114684753 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 47915213 47915233 -114684697 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 768 232 0 7 chrX 47915234 47915389 -114684541 + FRAM SINE Alu 12 165 -11 2781 197 20 2 chrX 47915630 47916167 -114683763 + L1 LINE L1 4784 5330 -816 838 146 7 21 chrX 47916168 47916312 -114683618 + AluJo SINE Alu 1 142 -170 925 301 14 7 chrX 47916312 47916598 -114683332 + L1MCc LINE L1 139 426 -5997 890 263 67 25 chrX 47916669 47916985 -114682945 - L1MA9 LINE L1 -30 6282 5954 498 109 30 20 chrX 47917025 47917126 -114682804 + CT-rich Low_complexity Low_complexity 4 105 0 310 148 37 0 chrX 47917138 47917192 -114682738 - L1MA9 LINE L1 -370 5942 5887 * 11659 33 11 0 chrX 47917184 47919233 -114680697 - L1PA4 LINE L1 -68 6087 4016 1028 179 56 0 chrX 47919233 47919428 -114680502 - MER110A LTR ERV1 -262 206 1 189 0 0 0 chrX 47919536 47919557 -114680373 + (TG)n Simple_repeat Simple_repeat 2 22 0 3137 122 19 33 chrX 47919568 47920084 -114679846 - L1MA5 LINE L1 -11 6289 5781 2180 130 60 0 chrX 47920118 47920486 -114679444 - L1MA4 LINE L1 -1 6299 5910 506 187 0 0 chrX 47920486 47920561 -114679369 - AluJ/FLAM SINE Alu -228 84 10 1817 144 3 27 chrX 47922541 47922840 -114677090 + AluSx SINE Alu 1 292 -20 196 333 95 27 chrX 47923057 47923204 -114676726 - MIR3 SINE MIR 0 208 52 2048 154 0 0 chrX 47924767 47925079 -114674851 - AluSx SINE Alu 0 312 1 1758 117 8 4 chrX 47926135 47926391 -114673539 + AluSq SINE Alu 34 290 -23 201 143 0 0 chrX 47926391 47926426 -114673504 + (CAAAC)n Simple_repeat Simple_repeat 5 39 0 229 114 45 0 chrX 47926508 47926552 -114673378 - MLT2A1 LTR ERVL 0 444 399 2049 183 41 26 chrX 47926652 47927190 -114672740 - MLT2A2 LTR ERVL -6 548 2 257 270 96 9 chrX 47928152 47928267 -114671663 - MER112 DNA MER1_type -12 248 124 2927 119 12 0 chrX 47929050 47929471 -114670459 - L1PA11 LINE L1 -1 6173 5748 358 226 158 0 chrX 47929638 47929784 -114670146 - L1M4 LINE L1 -1227 4919 4751 320 294 7 7 chrX 47929846 47929982 -114669948 + L2 LINE L2 1525 1660 -1654 327 279 174 18 chrX 47930188 47930407 -114669523 - L2 LINE L2 -1537 1777 1525 261 143 0 0 chrX 47930439 47930481 -114669449 + MER77 LTR ERV1 564 605 0 375 340 13 51 chrX 47930481 47930716 -114669214 + MER77-int LTR ERV1 5 230 -3961 * 947 280 59 58 chrX 47930550 47930971 -114668959 + HERVL68-D LTR ERVL 24 531 -2506 1506 212 4 0 chrX 47930971 47931249 -114668681 + AluJo SINE Alu 9 287 -25 947 280 59 58 chrX 47931249 47931478 -114668452 + HERVL68-D LTR ERVL 531 758 -2279 1551 253 58 31 chrX 47931496 47932013 -114667917 + HERVL68-D LTR ERVL 1836 2366 -671 926 178 16 70 chrX 47932122 47932364 -114667566 + AluJb SINE Alu 50 278 -34 2053 122 0 7 chrX 47932644 47932967 -114666963 + AluSp SINE Alu 6 313 0 2022 106 6 26 chrX 47934397 47934729 -114665201 + AluSq SINE Alu 9 334 0 2018 127 0 0 chrX 47935217 47935500 -114664430 - AluSx SINE Alu -19 293 11 2464 71 0 0 chrX 47936530 47936827 -114663103 - AluY SINE Alu -14 297 1 1208 204 27 44 chrX 47937892 47938186 -114661744 + AluJo SINE Alu 1 289 -13 1989 190 101 22 chrX 47938237 47938666 -114661264 + MER21B LTR ERV1 1 554 -377 267 347 48 0 chrX 47938828 47938975 -114660955 + MIR SINE MIR 47 200 -62 248 281 83 21 chrX 47939041 47939233 -114660697 - MER113 DNA MER1_type? -307 214 11 2049 228 35 25 chrX 47939648 47940213 -114659717 + HERVL68-D LTR ERVL 2323 2893 -144 1447 229 16 19 chrX 47940223 47940590 -114659340 + MLT2D LTR ERVL 1 366 -48 351 0 0 0 chrX 47940641 47940680 -114659250 + (CA)n Simple_repeat Simple_repeat 2 40 0 447 164 14 0 chrX 47940700 47940773 -114659157 + HERVL68 LTR ERVL 2899 2972 -65 930 215 62 5 chrX 47941709 47941918 -114658012 + AluJo SINE Alu 85 305 -7 364 314 15 44 chrX 47943168 47943372 -114656558 + MIR SINE MIR 65 262 0 22 0 0 0 chrX 47943732 47943754 -114656176 + AT_rich Low_complexity Low_complexity 1 22 0 2246 230 96 15 chrX 47943754 47944492 -114655438 - L1M4 LINE L1 -1007 5139 4342 486 326 48 24 chrX 47944562 47944896 -114655034 - L1M4 LINE L1 -2330 3816 3475 632 101 0 0 chrX 47946378 47946467 -114653463 - MLT2A2 LTR ERVL -363 90 2 640 49 0 0 chrX 47947438 47947520 -114652410 - L1PA2 LINE L1 0 6155 6074 4127 42 17 0 chrX 47948072 47948554 -114651376 + LTR2B LTR ERV1 1 490 0 2617 124 5 43 chrX 47948856 47949300 -114650630 - L1PA11 LINE L1 0 6174 5748 312 245 175 0 chrX 47949472 47949615 -114650315 - L1M4 LINE L1 -1228 4918 4751 240 345 7 0 chrX 47949673 47949812 -114650118 + L2 LINE L2 1521 1660 -1654 254 295 58 36 chrX 47950097 47950236 -114649694 - L2 LINE L2 -1648 1666 1525 264 143 0 0 chrX 47950268 47950310 -114649620 + MER77 LTR ERV1 564 605 0 758 329 32 44 chrX 47950362 47950804 -114649126 + HERVL68-D LTR ERVL 9 525 -2512 1473 199 11 3 chrX 47950804 47951090 -114648840 + AluJo SINE Alu 1 288 -24 758 329 32 44 chrX 47951090 47951322 -114648608 + HERVL68-D LTR ERVL 525 758 -2279 1463 231 62 45 chrX 47951334 47951862 -114648068 + HERVL68-D LTR ERVL 1830 2366 -671 880 246 0 25 chrX 47951983 47952223 -114647707 + AluJb SINE Alu 45 278 -34 507 96 0 0 chrX 47952363 47952446 -114647484 + (CA)n Simple_repeat Simple_repeat 2 84 0 3970 53 0 8 chrX 47952549 47953039 -114646891 + L1PA7 LINE L1 5669 6154 0 1258 243 3 13 chrX 47953052 47953356 -114646574 + AluJb SINE Alu 1 301 -1 2339 265 57 14 chrX 47954365 47955177 -114644753 - L1M4 LINE L1 -1022 5124 4278 635 273 58 68 chrX 47955179 47955560 -114644370 - L1M4 LINE L1 -2333 3813 3437 849 179 71 0 chrX 47955579 47955747 -114644183 - L1MA1 LINE L1 -5 6297 6118 279 71 0 0 chrX 47960174 47960216 -114639714 + (T)n Simple_repeat Simple_repeat 1 42 0 5678 152 10 16 chrX 47963675 47965252 -114634678 - L1MA2 LINE L1 -175 6129 4568 2387 267 67 29 chrX 47965254 47965589 -114634341 - L1M4 LINE L1 -2696 3450 3129 2144 123 10 0 chrX 47965589 47965898 -114634032 - AluSx SINE Alu 0 312 1 2387 267 67 29 chrX 47965898 47966735 -114633195 - L1M4 LINE L1 -3017 3129 2234 21 36 0 0 chrX 47966954 47966982 -114632948 + AT_rich Low_complexity Low_complexity 1 28 0 255 93 0 0 chrX 47967147 47967190 -114632740 + (A)n Simple_repeat Simple_repeat 1 43 0 515 216 6 0 chrX 47967505 47967667 -114632263 + CT-rich Low_complexity Low_complexity 3 165 0 4369 121 13 13 chrX 47967734 47968421 -114631509 - L1PA13 LINE L1 -2 6161 5475 945 269 16 41 chrX 47968474 47968839 -114631091 - L1MCc LINE L1 -6051 372 17 253 322 23 0 chrX 47968908 47968995 -114630935 + MER58 DNA MER1_type 1 89 -2331 1176 178 7 48 chrX 47969593 47969862 -114630068 + AluJo SINE Alu 45 302 -10 2330 72 10 3 chrX 47970438 47970731 -114629199 - AluSc SINE Alu -14 295 1 21 0 0 0 chrX 47971824 47971845 -114628085 + AT_rich Low_complexity Low_complexity 1 21 0 648 227 60 0 chrX 47972890 47973040 -114626890 - AluSg/x SINE Alu -18 292 134 813 233 4 40 chrX 47976028 47976256 -114623674 + AluJo SINE Alu 3 222 -90 25 0 0 0 chrX 47976285 47976310 -114623620 + AT_rich Low_complexity Low_complexity 1 25 0 1676 223 105 25 chrX 47976359 47976767 -114623163 + MER21B LTR ERV1 1 441 -422 380 300 65 10 chrX 47977167 47977367 -114622563 - MER113 DNA MER1_type? -297 224 14 1624 146 8 4 chrX 47977426 47977680 -114622250 + AluSq SINE Alu 52 306 -7 309 242 23 8 chrX 47977680 47977808 -114622122 + GA-rich Low_complexity Low_complexity 1 130 0 286 308 39 0 chrX 47978569 47978673 -114621257 + MIR SINE MIR 82 189 -73 3472 219 37 1 chrX 47980058 47980788 -114619142 - MLT1C-int LTR MaLR -615 756 1 2658 162 0 9 chrX 47980794 47981060 -114618870 - MLT1C LTR MaLR -6 461 199 2355 161 4 62 chrX 47981060 47981478 -114618452 - MSTB2 LTR MaLR -1 456 68 2030 136 0 31 chrX 47981478 47981795 -114618135 - AluSx SINE Alu -3 309 3 2355 161 4 62 chrX 47981795 47981860 -114618070 - MSTB2 LTR MaLR -389 68 1 2658 162 0 9 chrX 47981860 47982032 -114617898 - MLT1C LTR MaLR -268 199 27 186 43 0 0 chrX 47982265 47982288 -114617642 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1192 214 7 31 chrX 47983164 47983458 -114616472 + AluJo SINE Alu 1 287 -15 2123 184 10 8 chrX 47983491 47983878 -114616052 + MLT1B LTR MaLR 1 388 -2 207 308 51 13 chrX 47983978 47984056 -114615874 + L2 LINE L2 1153 1233 -2081 292 296 159 13 chrX 47984260 47984486 -114615444 + L2 LINE L2 1525 1783 -1531 520 263 136 8 chrX 47984515 47984751 -114615179 + L1M4 LINE L1 4640 4905 -1241 703 331 67 26 chrX 47985117 47985609 -114614321 + REP3 LTR ERV 3 514 -48 380 300 65 10 chrX 47985829 47986029 -114613901 + MER113 DNA MER1_type? 14 224 -297 1175 228 140 25 chrX 47986429 47986785 -114613145 - MER21B LTR ERV1 -422 441 45 570 154 103 3 chrX 48186785 48186958 -114412972 - AluJo SINE Alu -75 237 1 22 0 0 0 chrX 48187200 48187222 -114412708 + AT_rich Low_complexity Low_complexity 1 22 0 1971 130 47 7 chrX 48187347 48187647 -114412283 - AluJb SINE Alu 0 312 1 741 214 0 0 chrX 48187647 48187773 -114412157 - FLAM_A SINE Alu -6 127 2 21 0 0 0 chrX 48187781 48187802 -114412128 + AT_rich Low_complexity Low_complexity 1 21 0 780 167 14 36 chrX 48187905 48188043 -114411887 - AluJo SINE Alu -176 136 2 625 200 9 17 chrX 48188281 48188396 -114411534 - AluJo/FRAM SINE Alu -23 289 176 1866 98 4 8 chrX 48188397 48188642 -114411288 - AluY SINE Alu -67 244 1 1278 190 148 8 chrX 48188661 48188924 -114411006 - AluJo SINE Alu -12 300 1 22 0 0 0 chrX 48188932 48188954 -114410976 + AT_rich Low_complexity Low_complexity 1 22 0 2543 73 0 6 chrX 48188956 48189269 -114410661 + AluY SINE Alu 1 311 0 2446 90 0 0 chrX 48189639 48189949 -114409981 - AluSq SINE Alu -3 310 1 2960 161 59 2 chrX 48190967 48191445 -114408485 + MLT1D LTR MaLR 1 505 0 470 270 43 9 chrX 48191461 48191576 -114408354 - L2 LINE L2 0 3272 3154 600 153 27 0 chrX 48191723 48191834 -114408096 - L1MD3 LINE L1 0 7995 7882 894 137 0 0 chrX 48191837 48191968 -114407962 - FLAM_C SINE Alu -12 131 1 2099 169 39 5 chrX 48191994 48192403 -114407527 - L1MC4a LINE L1 -343 7465 7043 255 283 98 0 chrX 48192582 48192674 -114407256 - MIR SINE MIR -71 191 91 2327 83 0 71 chrX 48193332 48193668 -114406262 - AluSx SINE Alu 0 312 1 205 361 66 16 chrX 48193917 48194039 -114405891 + MIR3 SINE MIR 3 130 -78 2241 116 0 0 chrX 48194149 48194451 -114405479 + AluSx SINE Alu 1 302 -10 1268 172 0 56 chrX 48194556 48194824 -114405106 + AluJo SINE Alu 44 296 -16 2117 138 0 0 chrX 48195883 48196174 -114403756 + AluJb SINE Alu 1 291 -21 2211 108 3 3 chrX 48196268 48196565 -114403365 + AluSx SINE Alu 1 297 -15 1543 148 121 0 chrX 48196636 48196893 -114403037 - AluJo SINE Alu -21 291 4 4158 132 44 75 chrX 48196920 48196972 -114402958 - L1MB4 LINE L1 0 6180 6128 2183 114 0 3 chrX 48196972 48197269 -114402661 - AluSx SINE Alu -16 296 1 4158 132 44 75 chrX 48197269 48197414 -114402516 - L1MB4 LINE L1 -52 6128 5980 2504 66 0 3 chrX 48197414 48197717 -114402213 + AluY SINE Alu 1 302 -9 4158 132 44 75 chrX 48197717 48197887 -114402043 - L1MB4 LINE L1 -200 5980 5806 2374 90 0 3 chrX 48197887 48198187 -114401743 + AluSg SINE Alu 1 299 -11 4158 132 44 75 chrX 48198187 48198546 -114401384 - L1MB4 LINE L1 -374 5806 5477 225 65 0 0 chrX 48198546 48198577 -114401353 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4158 132 44 75 chrX 48198577 48198663 -114401267 - L1MB4 LINE L1 -703 5477 5390 601 218 222 51 chrX 48198663 48198779 -114401151 - MLT1B LTR MaLR -68 322 227 2319 103 0 3 chrX 48198779 48199089 -114400841 - AluSx SINE Alu -3 309 1 601 218 222 51 chrX 48199089 48199247 -114400683 - MLT1B LTR MaLR -163 227 1 1849 168 0 23 chrX 48200023 48200332 -114399598 - AluJb SINE Alu -10 302 1 1811 163 0 46 chrX 48200553 48200859 -114399071 - AluJb SINE Alu -20 292 1 2300 115 0 3 chrX 48201123 48201436 -114398494 - AluSx SINE Alu 0 312 1 2400 68 7 0 chrX 48201697 48201991 -114397939 + AluSp SINE Alu 2 297 -16 499 321 19 52 chrX 48202145 48202453 -114397477 + L1M4 LINE L1 2805 3102 -3044 27 73 0 0 chrX 48202477 48202532 -114397398 + AT_rich Low_complexity Low_complexity 1 55 0 2206 119 0 10 chrX 48202605 48202915 -114397015 + AluSx SINE Alu 1 307 -5 1691 159 10 30 chrX 48203013 48203308 -114396622 - AluJb SINE Alu -23 289 1 483 307 62 28 chrX 48203342 48203765 -114396165 - HAL1b LINE L1 -759 589 293 1787 142 60 7 chrX 48204331 48204612 -114395318 + AluJb SINE Alu 1 296 -16 1757 158 0 34 chrX 48204760 48205087 -114394843 - AluJb SINE Alu 0 317 1 198 89 107 0 chrX 48205166 48205222 -114394708 + (TATAG)n Simple_repeat Simple_repeat 3 64 0 2005 138 3 0 chrX 48205514 48205804 -114394126 + AluSx SINE Alu 1 291 -21 1156 208 5 18 chrX 48206316 48206537 -114393393 + MER58A DNA MER1_type 1 218 -6 2387 81 0 0 chrX 48206856 48207152 -114392778 + AluSg SINE Alu 1 296 -14 2332 69 24 0 chrX 48208110 48208398 -114391532 - AluSc SINE Alu -14 295 1 4955 140 35 18 chrX 48208410 48209241 -114390689 - L1MA7 LINE L1 -4 6287 5443 2217 104 0 3 chrX 48209273 48209572 -114390358 - AluSg SINE Alu -12 298 1 458 230 122 14 chrX 48209581 48209729 -114390201 - MIR SINE MIR -74 188 25 1396 201 60 66 chrX 48209756 48209872 -114390058 + L1MC5 LINE L1 7412 7527 -434 2282 170 25 37 chrX 48209872 48210161 -114389769 + MER63B DNA MER1_type 2 287 -775 1973 125 0 47 chrX 48210161 48210491 -114389439 - AluSx SINE Alu 0 316 1 2282 170 25 37 chrX 48210491 48210636 -114389294 + MER63B DNA MER1_type 287 432 -4 1396 201 60 66 chrX 48210636 48210790 -114389140 + L1MC5 LINE L1 7527 7680 -281 1732 167 3 36 chrX 48210790 48211095 -114388835 - AluJb SINE Alu -14 298 4 1396 201 60 66 chrX 48211095 48211326 -114388604 + L1MC5 LINE L1 7680 7911 -50 51 31 0 0 chrX 48211554 48211619 -114388311 + AT_rich Low_complexity Low_complexity 1 65 0 213 224 0 0 chrX 48212154 48212212 -114387718 + (TA)n Simple_repeat Simple_repeat 2 59 0 2075 134 0 29 chrX 48212274 48212587 -114387343 + AluJo SINE Alu 1 304 -8 243 0 0 0 chrX 48212587 48212614 -114387316 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 297 0 0 0 chrX 48212613 48212646 -114387284 + (GA)n Simple_repeat Simple_repeat 2 34 0 2313 92 0 10 chrX 48212745 48213050 -114386880 + AluSx SINE Alu 1 302 -10 421 209 52 9 chrX 48213070 48213185 -114386745 - L1ME4a LINE L1 -199 5922 5803 2338 112 0 6 chrX 48214071 48214385 -114385545 - AluSx SINE Alu 0 312 1 604 121 48 38 chrX 48214442 48214610 -114385320 - L1MA7 LINE L1 -752 5431 5276 272 284 91 0 chrX 48214752 48214840 -114385090 + MIR SINE MIR 7 102 -160 1757 174 0 24 chrX 48214886 48215184 -114384746 + AluJo SINE Alu 1 291 -21 2126 119 0 0 chrX 48215186 48215505 -114384425 + AluSx SINE Alu 1 319 0 1694 102 164 4 chrX 48215640 48215896 -114384034 + AluSc SINE Alu 1 297 -12 2389 81 0 0 chrX 48217257 48217554 -114382376 - AluY SINE Alu -14 297 1 2199 114 0 7 chrX 48217755 48218053 -114381877 - AluSx SINE Alu -16 296 1 459 299 22 0 chrX 48218710 48218847 -114381083 - HAL1 LINE L1 -625 1882 1743 419 214 20 10 chrX 48218860 48218958 -114380972 - MLT1E2 LTR MaLR -279 347 249 1894 157 3 10 chrX 48219356 48219661 -114380269 + AluJo SINE Alu 1 303 -9 231 278 174 17 chrX 48219756 48219871 -114380059 + L2 LINE L2 3134 3266 -6 2316 78 7 7 chrX 48220150 48220445 -114379485 + AluSg SINE Alu 1 295 -15 2072 127 0 17 chrX 48221152 48221451 -114378479 - AluJb SINE Alu -18 294 1 21 0 0 0 chrX 48222225 48222246 -114377684 + AT_rich Low_complexity Low_complexity 1 21 0 2464 82 0 3 chrX 48222617 48222923 -114377007 - AluSp SINE Alu -8 305 1 229 281 109 0 chrX 48223556 48223620 -114376310 - L2 LINE L2 -61 3211 3141 2306 64 0 0 chrX 48223990 48224314 -114375616 - AluY SINE Alu 0 324 1 2250 116 0 3 chrX 48225050 48225353 -114374577 - AluSx SINE Alu -10 302 1 337 273 173 0 chrX 48227557 48227667 -114372263 + MIR3 SINE MIR 34 162 -46 890 254 134 32 chrX 48227695 48228037 -114371893 - L2 LINE L2 -61 3252 2876 582 235 171 0 chrX 48228130 48228300 -114371630 - MIR SINE MIR -16 246 48 2156 128 0 0 chrX 48228418 48228715 -114371215 - AluSx SINE Alu -15 297 1 272 275 28 76 chrX 48229267 48229478 -114370452 - L1MC4 LINE L1 -1 8041 7841 3741 179 85 41 chrX 48229519 48229612 -114370318 - L1ME2 LINE L1 -19 6145 6058 1278 203 14 5 chrX 48229612 48229829 -114370101 - MER58A DNA MER1_type -1 223 5 3741 179 85 41 chrX 48229829 48229923 -114370007 - L1ME2 LINE L1 -106 6058 5970 1745 178 3 3 chrX 48229923 48230221 -114369709 - AluJo SINE Alu -14 298 1 3741 179 85 41 chrX 48230221 48230358 -114369572 - L1ME2 LINE L1 -194 5970 5841 2296 94 7 0 chrX 48230358 48230657 -114369273 - AluSp SINE Alu -12 301 1 3741 179 85 41 chrX 48230657 48231533 -114368397 - L1ME2 LINE L1 -323 5841 4885 1159 139 0 56 chrX 48231525 48231556 -114368374 - L1M4 LINE L1 -656 5518 5487 * 2616 50 7 0 chrX 48231556 48231858 -114368072 - AluY SINE Alu -7 304 1 1159 139 0 56 chrX 48231858 48232041 -114367889 - L1M4 LINE L1 -687 5487 5316 893 168 0 0 chrX 48232041 48232184 -114367746 - FLAM_C SINE Alu 0 143 1 2633 174 18 12 chrX 48232184 48232913 -114367017 - L1M4 LINE L1 -814 5332 4484 * 4188 112 61 79 chrX 48232911 48233001 -114366929 + L1MA9 LINE L1 5494 5584 -728 1961 141 3 20 chrX 48233001 48233306 -114366624 + AluJb SINE Alu 1 300 -12 4188 112 61 79 chrX 48233306 48233853 -114366077 + L1MA9 LINE L1 5584 6115 -197 2106 131 3 0 chrX 48233853 48234143 -114365787 - AluSx SINE Alu -21 291 1 4188 112 61 79 chrX 48234143 48234338 -114365592 + L1MA9 LINE L1 6115 6312 0 1631 185 56 33 chrX 48234354 48234389 -114365541 - L1M4 LINE L1 -1667 4479 4446 2526 136 0 8 chrX 48234389 48234764 -114365166 - L1PA16 LINE L1 0 6166 5795 1631 185 56 33 chrX 48234764 48235035 -114364895 - L1M4 LINE L1 -1700 4446 4157 2230 98 0 3 chrX 48235035 48235330 -114364600 - AluSg SINE Alu -16 294 1 1631 185 56 33 chrX 48235330 48235471 -114364459 - L1M4 LINE L1 -1989 4157 4021 472 221 154 0 chrX 48235492 48235628 -114364302 - L1ME1 LINE L1 -5 6161 6005 1171 202 5 0 chrX 48235762 48235980 -114363950 - AluJb SINE Alu -10 302 84 3224 230 28 71 chrX 48236081 48236235 -114363695 - L1M4 LINE L1 -972 5568 5409 2279 82 11 0 chrX 48236235 48236557 -114363373 - AluSq SINE Alu 0 325 1 3224 230 28 71 chrX 48236557 48237234 -114362696 - L1M4 LINE L1 -1131 5409 4704 1978 156 0 3 chrX 48237234 48237535 -114362395 - AluJb SINE Alu -12 300 1 3224 230 28 71 chrX 48237535 48237710 -114362220 - L1M4 LINE L1 -1836 4704 4523 2528 72 0 0 chrX 48237710 48238014 -114361916 + AluSc SINE Alu 1 304 -5 3224 230 28 71 chrX 48238014 48238329 -114361601 - L1M4 LINE L1 -2017 4523 4337 2242 104 0 7 chrX 48238329 48238628 -114361302 + AluSx SINE Alu 1 297 -15 3224 230 28 71 chrX 48238628 48238898 -114361032 - L1M4 LINE L1 -2203 4337 4057 1195 216 56 73 chrX 48238867 48238984 -114360946 - L1MDa LINE L1 -3526 3014 2897 * 2333 99 16 0 chrX 48238984 48239288 -114360642 - AluSx SINE Alu -3 309 1 1195 216 56 73 chrX 48239288 48239870 -114360060 - L1MDa LINE L1 -3643 2897 2325 519 17 0 0 chrX 48239870 48239930 -114360000 + (CA)n Simple_repeat Simple_repeat 1 60 0 1195 216 56 73 chrX 48239930 48240020 -114359910 - L1MDa LINE L1 -4215 2325 2235 2203 100 0 3 chrX 48240022 48240313 -114359617 - AluSx SINE Alu -22 290 1 1815 164 3 20 chrX 48240313 48240612 -114359318 - AluJo SINE Alu -8 304 11 374 175 126 10 chrX 48240619 48240722 -114359208 - L1MC4 LINE L1 -1116 6926 6812 1548 229 88 26 chrX 48240722 48241176 -114358754 - L2 LINE L2 -1600 1714 1233 752 103 0 9 chrX 48241786 48241893 -114358037 - AluSx SINE Alu -13 297 192 1140 92 0 0 chrX 48241893 48242035 -114357895 - AluSx SINE Alu -170 142 1 189 147 0 0 chrX 48242839 48242873 -114357057 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 837 153 51 0 chrX 48242879 48243016 -114356914 - FRAM SINE Alu -4 172 29 195 222 0 0 chrX 48243059 48243095 -114356835 - L2 LINE L2 -17 3255 3220 607 329 82 31 chrX 48243704 48244154 -114355776 - HAL1b LINE L1 -542 806 334 21 0 0 0 chrX 48244165 48244186 -114355744 + AT_rich Low_complexity Low_complexity 1 21 0 2283 88 3 44 chrX 48244267 48244413 -114355517 + AluSq SINE Alu 1 151 -162 2907 47 14 0 chrX 48244413 48244775 -114355155 + L1PA8 LINE L1 5805 6171 -1 2283 88 3 44 chrX 48244775 48244946 -114354984 + AluSq SINE Alu 151 305 -8 2009 113 28 0 chrX 48244948 48245239 -114354691 + AluSp SINE Alu 1 299 -14 391 228 118 0 chrX 48245439 48245566 -114354364 - L1ME3 LINE L1 0 6162 6021 2031 223 41 7 chrX 48245569 48246107 -114353823 - L1ME3 LINE L1 -303 5859 5304 1703 173 79 64 chrX 48246095 482468